diff --git a/pfam_gap_rates/2-Hacid_dh.gap.json b/pfam_gap_rates/2-Hacid_dh.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f1f5fba88b687371c34493c09ffe74c9aa060e5b
--- /dev/null
+++ b/pfam_gap_rates/2-Hacid_dh.gap.json
@@ -0,0 +1 @@
+{"family": "2-Hacid_dh", "n_seqs": 5000, "length": 337, "gap_rates": [0.7358, 0.647, 0.619, 0.608, 0.6048, 0.576, 0.5874, 0.4952, 0.4724, 0.4558, 0.4356, 0.4132, 0.378, 0.3578, 0.3416, 0.3302, 0.3168, 0.8944, 0.9194, 0.8676, 0.589, 0.4686, 0.3418, 0.7526, 0.2536, 0.2438, 0.2374, 0.2334, 0.2246, 0.2158, 0.728, 0.845, 0.6062, 0.1976, 0.1846, 0.168, 0.1616, 0.1544, 0.1534, 0.1394, 0.1186, 0.1016, 0.097, 0.0866, 0.0754, 0.0696, 0.9366, 0.0622, 0.0572, 0.055, 0.0536, 0.0518, 0.05, 0.0486, 0.0462, 0.0524, 0.0548, 0.9384, 0.9064, 0.3212, 0.0534, 0.0498, 0.0328, 0.031, 0.028, 0.0232, 0.0226, 0.027, 0.0576, 0.888, 0.7576, 0.0252, 0.0092, 0.0088, 0.0082, 0.0074, 0.0068, 0.0068, 0.0072, 0.0052, 0.0052, 0.0048, 0.007, 0.0048, 0.0048, 0.004, 0.0038, 0.006, 0.0058, 0.0036, 0.0034, 0.0036, 0.0046, 0.0054, 0.0046, 0.0128, 0.0048, 0.0052, 0.0052, 0.005, 0.0054, 0.0058, 0.006, 0.0278, 0.0096, 0.0088, 0.0096, 0.018, 0.0106, 0.0104, 0.01, 0.0106, 0.0112, 0.0122, 0.0232, 0.0232, 0.0238, 0.0238, 0.024, 0.0242, 0.025, 0.0258, 0.0268, 0.0272, 0.0278, 0.0284, 0.0288, 0.029, 0.0294, 0.0298, 0.0302, 0.0304, 0.0316, 0.0316, 0.0318, 0.0322, 0.0324, 0.033, 0.0332, 0.0336, 0.0344, 0.0346, 0.035, 0.0354, 0.036, 0.0364, 0.0366, 0.0384, 0.0396, 0.0406, 0.041, 0.0412, 0.0412, 0.0424, 0.0434, 0.0442, 0.0444, 0.0446, 0.0456, 0.046, 0.0474, 0.0488, 0.0506, 0.0514, 0.0528, 0.0532, 0.0544, 0.0548, 0.0558, 0.0562, 0.0566, 0.0568, 0.0576, 0.0584, 0.059, 0.0598, 0.0612, 0.0622, 0.0626, 0.0632, 0.0636, 0.065, 0.0662, 0.0664, 0.0666, 0.0672, 0.0678, 0.0682, 0.069, 0.0706, 0.0726, 0.0756, 0.0862, 0.0892, 0.0944, 0.105, 0.1076, 0.1136, 0.1184, 0.1274, 0.1768, 0.3212, 0.4262, 0.5838, 0.7176, 0.7896, 0.8414, 0.8894, 0.9414, 0.9474, 0.9244, 0.8644, 0.8038, 0.7608, 0.6758, 0.5236, 0.3876, 0.2178, 0.1422, 0.122, 0.116, 0.1108, 0.1064, 0.0968, 0.092, 0.0878, 0.0782, 0.074, 0.0714, 0.0696, 0.0686, 0.068, 0.0674, 0.067, 0.0666, 0.0662, 0.066, 0.0648, 0.0634, 0.0628, 0.0626, 0.0618, 0.061, 0.0596, 0.0584, 0.058, 0.0568, 0.0568, 0.0566, 0.0562, 0.0552, 0.0546, 0.0536, 0.0528, 0.052, 0.051, 0.0506, 0.0484, 0.0466, 0.0458, 0.0454, 0.0446, 0.0442, 0.0436, 0.0428, 0.0414, 0.0412, 0.0412, 0.0408, 0.0406, 0.0388, 0.038, 0.0366, 0.0362, 0.0356, 0.0354, 0.0348, 0.0346, 0.0336, 0.0334, 0.0332, 0.0328, 0.0324, 0.0318, 0.0316, 0.0316, 0.0312, 0.0304, 0.0302, 0.0296, 0.0292, 0.0288, 0.0286, 0.028, 0.0276, 0.027, 0.0266, 0.0252, 0.025, 0.024, 0.024, 0.0238, 0.0234, 0.0232, 0.0224, 0.0186, 0.0626, 0.064, 0.0644, 0.064, 0.0642, 0.0656, 0.0654, 0.0658, 0.0658, 0.0666, 0.0686, 0.0686, 0.0698, 0.0716, 0.0746, 0.0774, 0.081, 0.0842, 0.0904, 0.1008, 0.1146, 0.1372, 0.1572, 0.257, 0.2182, 0.2548, 0.2844, 0.309, 0.3528, 0.4054, 0.6358], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/2OG-FeII_Oxy_4.gap.json b/pfam_gap_rates/2OG-FeII_Oxy_4.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..6866d0a879b6e31ec3145b4a2aa39d9adbe8214c
--- /dev/null
+++ b/pfam_gap_rates/2OG-FeII_Oxy_4.gap.json
@@ -0,0 +1 @@
+{"family": "2OG-FeII_Oxy_4", "n_seqs": 288, "length": 149, "gap_rates": [0.4652777777777778, 0.2673611111111111, 0.18055555555555555, 0.11805555555555555, 0.1111111111111111, 0.1076388888888889, 0.10069444444444445, 0.09722222222222222, 0.08680555555555555, 0.0798611111111111, 0.0798611111111111, 0.0798611111111111, 0.07291666666666667, 0.07291666666666667, 0.07291666666666667, 0.07291666666666667, 0.06944444444444445, 0.06944444444444445, 0.6909722222222222, 0.11458333333333333, 0.9444444444444444, 0.05555555555555555, 0.04513888888888889, 0.03819444444444445, 0.052083333333333336, 0.1388888888888889, 0.034722222222222224, 0.034722222222222224, 0.034722222222222224, 0.034722222222222224, 0.034722222222222224, 0.03125, 0.03125, 0.5, 0.8888888888888888, 0.5069444444444444, 0.4305555555555556, 0.024305555555555556, 0.010416666666666666, 0.013888888888888888, 0.017361111111111112, 0.013888888888888888, 0.006944444444444444, 0.006944444444444444, 0.006944444444444444, 0.010416666666666666, 0.010416666666666666, 0.010416666666666666, 0.6944444444444444, 0.013888888888888888, 0.017361111111111112, 0.013888888888888888, 0.8229166666666666, 0.8368055555555556, 0.9340277777777778, 0.8715277777777778, 0.8333333333333334, 0.8194444444444444, 0.017361111111111112, 0.13194444444444445, 0.1076388888888889, 0.6631944444444444, 0.7430555555555556, 0.9375, 0.8333333333333334, 0.7152777777777778, 0.625, 0.04513888888888889, 0.5173611111111112, 0.5590277777777778, 0.7152777777777778, 0.7777777777777778, 0.8784722222222222, 0.9027777777777778, 0.8645833333333334, 0.7465277777777778, 0.6701388888888888, 0.5243055555555556, 0.5069444444444444, 0.04513888888888889, 0.052083333333333336, 0.9097222222222222, 0.9131944444444444, 0.9305555555555556, 0.9166666666666666, 0.9131944444444444, 0.8958333333333334, 0.0625, 0.04861111111111111, 0.03819444444444445, 0.041666666666666664, 0.041666666666666664, 0.03819444444444445, 0.03819444444444445, 0.041666666666666664, 0.03819444444444445, 0.03819444444444445, 0.03819444444444445, 0.034722222222222224, 0.034722222222222224, 0.034722222222222224, 0.03125, 0.03125, 0.7743055555555556, 0.04513888888888889, 0.041666666666666664, 0.041666666666666664, 0.6180555555555556, 0.6805555555555556, 0.3506944444444444, 0.03819444444444445, 0.05555555555555555, 0.06597222222222222, 0.06597222222222222, 0.06944444444444445, 0.0798611111111111, 0.08333333333333333, 0.8576388888888888, 0.1388888888888889, 0.7291666666666666, 0.8125, 0.8402777777777778, 0.875, 0.9131944444444444, 0.8472222222222222, 0.8333333333333334, 0.7708333333333334, 0.7291666666666666, 0.3194444444444444, 0.1423611111111111, 0.10069444444444445, 0.1111111111111111, 0.09027777777777778, 0.9479166666666666, 0.9479166666666666, 0.9479166666666666, 0.9479166666666666, 0.9479166666666666, 0.9479166666666666, 0.9479166666666666, 0.09375, 0.09375, 0.10069444444444445, 0.10069444444444445, 0.10069444444444445, 0.1076388888888889, 0.1111111111111111, 0.11805555555555555, 0.23958333333333334], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/2TM.gap.json b/pfam_gap_rates/2TM.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..72d8d8ca0ef305341de6e78a43eba57719c1062f
--- /dev/null
+++ b/pfam_gap_rates/2TM.gap.json
@@ -0,0 +1 @@
+{"family": "2TM", "n_seqs": 307, "length": 92, "gap_rates": [0.7850162866449512, 0.4788273615635179, 0.31596091205211724, 0.2703583061889251, 0.1758957654723127, 0.1465798045602606, 0.13029315960912052, 0.08794788273615635, 0.05863192182410423, 0.05863192182410423, 0.05211726384364821, 0.035830618892508145, 0.029315960912052116, 0.026058631921824105, 0.016286644951140065, 0.006514657980456026, 0.006514657980456026, 0.003257328990228013, 0.003257328990228013, 0.003257328990228013, 0.003257328990228013, 0.003257328990228013, 0.003257328990228013, 0.003257328990228013, 0.003257328990228013, 0.003257328990228013, 0.003257328990228013, 0.003257328990228013, 0.003257328990228013, 0.009771986970684038, 0.9315960912052117, 0.009771986970684038, 0.013029315960912053, 0.04234527687296417, 0.21172638436482086, 0.7915309446254072, 0.8501628664495114, 0.9153094462540716, 0.9250814332247557, 0.8859934853420195, 0.8273615635179153, 0.7296416938110749, 0.08143322475570032, 0.019543973941368076, 0.009771986970684038, 0.019543973941368076, 0.009771986970684038, 0.006514657980456026, 0.013029315960912053, 0.009771986970684038, 0.006514657980456026, 0.006514657980456026, 0.006514657980456026, 0.006514657980456026, 0.003257328990228013, 0.003257328990228013, 0.003257328990228013, 0.003257328990228013, 0.003257328990228013, 0.003257328990228013, 0.003257328990228013, 0.003257328990228013, 0.006514657980456026, 0.006514657980456026, 0.013029315960912053, 0.02280130293159609, 0.048859934853420196, 0.08469055374592833, 0.11726384364820847, 0.2768729641693811, 0.8208469055374593, 0.8175895765472313, 0.30944625407166126, 0.3257328990228013, 0.30944625407166126, 0.30618892508143325, 0.30293159609120524, 0.3289902280130293, 0.8273615635179153, 0.7980456026058632, 0.3257328990228013, 0.3322475570032573, 0.3355048859934853, 0.34201954397394135, 0.3550488599348534, 0.3745928338762215, 0.38436482084690554, 0.42996742671009774, 0.46254071661237783, 0.5244299674267101, 0.5537459283387622, 0.749185667752443], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/3D.gap.json b/pfam_gap_rates/3D.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a3c6cc7315df7d1d10398f05dc883f342af64c69
--- /dev/null
+++ b/pfam_gap_rates/3D.gap.json
@@ -0,0 +1 @@
+{"family": "3D", "n_seqs": 1258, "length": 82, "gap_rates": [0.4642289348171701, 0.1327503974562798, 0.03577106518282989, 0.017488076311605722, 0.016693163751987282, 0.016693163751987282, 0.013513513513513514, 0.013513513513513514, 0.037360890302066775, 0.00397456279809221, 0.003179650238473768, 0.0023847376788553257, 0.0023847376788553257, 0.0023847376788553257, 0.0023847376788553257, 0.0023847376788553257, 0.0023847376788553257, 0.0023847376788553257, 0.0023847376788553257, 0.0023847376788553257, 0.7551669316375199, 0.8163751987281399, 0.6875993640699523, 0.6812400635930048, 0.7273449920508744, 0.6550079491255962, 0.9062003179650239, 0.8243243243243243, 0.5794912559618441, 0.5620031796502385, 0.8918918918918919, 0.9062003179650239, 0.8775834658187599, 0.541335453100159, 0.5317965023847376, 0.5, 0.04689984101748808, 0.003179650238473768, 0.0023847376788553257, 0.003179650238473768, 0.000794912559618442, 0.0, 0.0, 0.0, 0.0, 0.0, 0.005564387917329093, 0.009538950715421303, 0.001589825119236884, 0.001589825119236884, 0.001589825119236884, 0.001589825119236884, 0.651033386327504, 0.001589825119236884, 0.001589825119236884, 0.001589825119236884, 0.0023847376788553257, 0.006359300476947536, 0.0047694753577106515, 0.007154213036565978, 0.016693163751987282, 0.014308426073131956, 0.014308426073131956, 0.022257551669316374, 0.026232114467408585, 0.028616852146263912, 0.03418124006359301, 0.5516693163751988, 0.04292527821939587, 0.04133545310015898, 0.6073131955484896, 0.5747217806041336, 0.04769475357710652, 0.05246422893481717, 0.058823529411764705, 0.06836248012718601, 0.075516693163752, 0.08187599364069953, 0.1041335453100159, 0.13195548489666137, 0.20508744038155802, 0.8410174880763116], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/5TM-5TMR_LYT.gap.json b/pfam_gap_rates/5TM-5TMR_LYT.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..547e9ebb84d5ac518a7109c5e895292c6260e901
--- /dev/null
+++ b/pfam_gap_rates/5TM-5TMR_LYT.gap.json
@@ -0,0 +1 @@
+{"family": "5TM-5TMR_LYT", "n_seqs": 577, "length": 192, "gap_rates": [0.6516464471403813, 0.5545927209705372, 0.5077989601386482, 0.48700173310225303, 0.4679376083188908, 0.44714038128249567, 0.4072790294627383, 0.7383015597920277, 0.35008665511265163, 0.3223570190641248, 0.2772963604852686, 0.24783362218370883, 0.9358752166377816, 0.17157712305025996, 0.14558058925476602, 0.12131715771230503, 0.10398613518197573, 0.06412478336221837, 0.05545927209705372, 0.043327556325823226, 0.03986135181975736, 0.03292894280762565, 0.025996533795493933, 0.02772963604852686, 0.02772963604852686, 0.02772963604852686, 0.024263431542461005, 0.022530329289428077, 0.022530329289428077, 0.025996533795493933, 0.022530329289428077, 0.022530329289428077, 0.022530329289428077, 0.02079722703639515, 0.019064124783362217, 0.019064124783362217, 0.019064124783362217, 0.019064124783362217, 0.019064124783362217, 0.019064124783362217, 0.8162911611785095, 0.8318890814558059, 0.8353552859618717, 0.8353552859618717, 0.8370883882149047, 0.8422876949740035, 0.8457538994800693, 0.8492201039861352, 0.8457538994800693, 0.8440207972270364, 0.8388214904679376, 0.8353552859618717, 0.8353552859618717, 0.8318890814558059, 0.82842287694974, 0.5285961871750433, 0.01559792027729636, 0.8752166377816292, 0.01559792027729636, 0.01559792027729636, 0.01559792027729636, 0.01559792027729636, 0.01559792027729636, 0.01559792027729636, 0.01559792027729636, 0.01559792027729636, 0.01559792027729636, 0.01559792027729636, 0.012131715771230503, 0.012131715771230503, 0.012131715771230503, 0.010398613518197574, 0.010398613518197574, 0.008665511265164644, 0.008665511265164644, 0.008665511265164644, 0.010398613518197574, 0.006932409012131715, 0.006932409012131715, 0.006932409012131715, 0.008665511265164644, 0.006932409012131715, 0.006932409012131715, 0.006932409012131715, 0.006932409012131715, 0.006932409012131715, 0.006932409012131715, 0.006932409012131715, 0.008665511265164644, 0.008665511265164644, 0.008665511265164644, 0.006932409012131715, 0.01386481802426343, 0.8648180242634316, 0.8422876949740035, 0.008665511265164644, 0.012131715771230503, 0.008665511265164644, 0.9358752166377816, 0.902946273830156, 0.1923743500866551, 0.01559792027729636, 0.008665511265164644, 0.008665511265164644, 0.01386481802426343, 0.008665511265164644, 0.006932409012131715, 0.005199306759098787, 0.005199306759098787, 0.005199306759098787, 0.0034662045060658577, 0.010398613518197574, 0.006932409012131715, 0.006932409012131715, 0.005199306759098787, 0.005199306759098787, 0.008665511265164644, 0.006932409012131715, 0.005199306759098787, 0.0034662045060658577, 0.029462738301559793, 0.025996533795493933, 0.01559792027729636, 0.01386481802426343, 0.022530329289428077, 0.1559792027729636, 0.4003466204506066, 0.45233968804159447, 0.8180242634315424, 0.8596187175043327, 0.6845753899480069, 0.05199306759098787, 0.02772963604852686, 0.01733102253032929, 0.012131715771230503, 0.012131715771230503, 0.01386481802426343, 0.01559792027729636, 0.01559792027729636, 0.01559792027729636, 0.01733102253032929, 0.01733102253032929, 0.025996533795493933, 0.025996533795493933, 0.029462738301559793, 0.06759098786828423, 0.06412478336221837, 0.08492201039861352, 0.24610051993067592, 0.21837088388214904, 0.10398613518197573, 0.08145580589254767, 0.06932409012131716, 0.0658578856152513, 0.06412478336221837, 0.060658578856152515, 0.06759098786828423, 0.0779896013864818, 0.14731369150779897, 0.1265164644714038, 0.12305025996533796, 0.09532062391681109, 0.09185441941074524, 0.08665511265164645, 0.09012131715771231, 0.08492201039861352, 0.09185441941074524, 0.15251299826689774, 0.14038128249566725, 0.11438474870017332, 0.11785095320623917, 0.11265164644714037, 0.13344887348353554, 0.12824956672443674, 0.12131715771230503, 0.14558058925476602, 0.1265164644714038, 0.12478336221837089, 0.14731369150779897, 0.13518197573656845, 0.1386481802426343, 0.15251299826689774, 0.15251299826689774, 0.15771230502599654, 0.1681109185441941, 0.1733102253032929, 0.18024263431542462, 0.21317157712305027, 0.24263431542461006, 0.29809358752166376, 0.3882149046793761, 0.5805892547660312], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/60KD_IMP.gap.json b/pfam_gap_rates/60KD_IMP.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a92267d5f594860e3a10fd6f527cd2ec714f654d
--- /dev/null
+++ b/pfam_gap_rates/60KD_IMP.gap.json
@@ -0,0 +1 @@
+{"family": "60KD_IMP", "n_seqs": 3168, "length": 315, "gap_rates": [0.26136363636363635, 0.0928030303030303, 0.06912878787878787, 0.06439393939393939, 0.0625, 0.059343434343434344, 0.05744949494949495, 0.054924242424242424, 0.05334595959595959, 0.05334595959595959, 0.05303030303030303, 0.052714646464646464, 0.05176767676767677, 0.05176767676767677, 0.05176767676767677, 0.05113636363636364, 0.05082070707070707, 0.05082070707070707, 0.050505050505050504, 0.050505050505050504, 0.04924242424242424, 0.04955808080808081, 0.04955808080808081, 0.04892676767676768, 0.04861111111111111, 0.048295454545454544, 0.047979797979797977, 0.047979797979797977, 0.04640151515151515, 0.043876262626262624, 0.043560606060606064, 0.04292929292929293, 0.039457070707070704, 0.039141414141414144, 0.038825757575757576, 0.03787878787878788, 0.03819444444444445, 0.03787878787878788, 0.03819444444444445, 0.03787878787878788, 0.03819444444444445, 0.03819444444444445, 0.03851010101010101, 0.03756313131313131, 0.05303030303030303, 0.6717171717171717, 0.7515782828282829, 0.9024621212121212, 0.9409722222222222, 0.9296085858585859, 0.8112373737373737, 0.7219065656565656, 0.6543560606060606, 0.03787878787878788, 0.09090909090909091, 0.9422348484848485, 0.041351010101010104, 0.8873106060606061, 0.9160353535353535, 0.8642676767676768, 0.03598484848484849, 0.03314393939393939, 0.029356060606060608, 0.027777777777777776, 0.026515151515151516, 0.026515151515151516, 0.026199494949494948, 0.025252525252525252, 0.024305555555555556, 0.024936868686868688, 0.02462121212121212, 0.02556818181818182, 0.025252525252525252, 0.024936868686868688, 0.025252525252525252, 0.041035353535353536, 0.024936868686868688, 0.028409090909090908, 0.026199494949494948, 0.03566919191919192, 0.9378156565656566, 0.024305555555555556, 0.027777777777777776, 0.025883838383838384, 0.02556818181818182, 0.030618686868686868, 0.027146464646464648, 0.02335858585858586, 0.019255050505050504, 0.019255050505050504, 0.019255050505050504, 0.01893939393939394, 0.019255050505050504, 0.019255050505050504, 0.019255050505050504, 0.019570707070707072, 0.019255050505050504, 0.019255050505050504, 0.01893939393939394, 0.019255050505050504, 0.019255050505050504, 0.019570707070707072, 0.03377525252525253, 0.02904040404040404, 0.15214646464646464, 0.16445707070707072, 0.4494949494949495, 0.5306186868686869, 0.5899621212121212, 0.6770833333333334, 0.6950757575757576, 0.7228535353535354, 0.7408459595959596, 0.7692550505050505, 0.8210227272727273, 0.8428030303030303, 0.8563762626262627, 0.8683712121212122, 0.8948863636363636, 0.9002525252525253, 0.9068813131313131, 0.9201388888888888, 0.9255050505050505, 0.9296085858585859, 0.9311868686868687, 0.9346590909090909, 0.9362373737373737, 0.9397095959595959, 0.9431818181818182, 0.9441287878787878, 0.9463383838383839, 0.9479166666666666, 0.9494949494949495, 0.9485479797979798, 0.9479166666666666, 0.9444444444444444, 0.9434974747474747, 0.9425505050505051, 0.9378156565656566, 0.9352904040404041, 0.9337121212121212, 0.9305555555555556, 0.9283459595959596, 0.9223484848484849, 0.9081439393939394, 0.9046717171717171, 0.8977272727272727, 0.8898358585858586, 0.8620580808080808, 0.8544823232323232, 0.8327020202020202, 0.7992424242424242, 0.7481060606060606, 0.7323232323232324, 0.709280303030303, 0.6865530303030303, 0.6303661616161617, 0.5684974747474747, 0.46622474747474746, 0.18244949494949494, 0.15561868686868688, 0.15088383838383837, 0.026515151515151516, 0.12342171717171717, 0.6966540404040404, 0.7900883838383839, 0.8371212121212122, 0.8832070707070707, 0.8301767676767676, 0.7774621212121212, 0.5438762626262627, 0.11363636363636363, 0.9160353535353535, 0.10858585858585859, 0.11395202020202021, 0.10542929292929293, 0.10227272727272728, 0.10258838383838384, 0.1038510101010101, 0.13383838383838384, 0.017676767676767676, 0.024305555555555556, 0.14962121212121213, 0.52114898989899, 0.5397727272727273, 0.5590277777777778, 0.5748106060606061, 0.610479797979798, 0.6496212121212122, 0.6777146464646465, 0.7449494949494949, 0.7714646464646465, 0.8349116161616161, 0.8459595959595959, 0.8639520202020202, 0.8977272727272727, 0.9084595959595959, 0.9201388888888888, 0.9444444444444444, 0.9463383838383839, 0.9416035353535354, 0.913510101010101, 0.9040404040404041, 0.8686868686868687, 0.8576388888888888, 0.8402777777777778, 0.7828282828282829, 0.764520202020202, 0.7326388888888888, 0.663510101010101, 0.6398358585858586, 0.5924873737373737, 0.5678661616161617, 0.5489267676767676, 0.53125, 0.5157828282828283, 0.12973484848484848, 0.022095959595959596, 0.017992424242424244, 0.021464646464646464, 0.020517676767676768, 0.020202020202020204, 0.019570707070707072, 0.01893939393939394, 0.018623737373737372, 0.019570707070707072, 0.019886363636363636, 0.019886363636363636, 0.021464646464646464, 0.020833333333333332, 0.021464646464646464, 0.034406565656565656, 0.03535353535353535, 0.036616161616161616, 0.7888257575757576, 0.8573232323232324, 0.9318181818181818, 0.9024621212121212, 0.8128156565656566, 0.7768308080808081, 0.04450757575757576, 0.18529040404040403, 0.7660984848484849, 0.88510101010101, 0.9460227272727273, 0.9261363636363636, 0.853219696969697, 0.7522095959595959, 0.02904040404040404, 0.36332070707070707, 0.476010101010101, 0.5609217171717171, 0.6452020202020202, 0.7215909090909091, 0.7894570707070707, 0.8630050505050505, 0.8977272727272727, 0.9305555555555556, 0.9406565656565656, 0.9160353535353535, 0.8854166666666666, 0.8440656565656566, 0.7496843434343434, 0.6770833333333334, 0.6070075757575758, 0.52114898989899, 0.41382575757575757, 0.3314393939393939, 0.03377525252525253, 0.12468434343434344, 0.8914141414141414, 0.6294191919191919, 0.04892676767676768, 0.03377525252525253, 0.025883838383838384, 0.029356060606060608, 0.18592171717171718, 0.02335858585858586, 0.0211489898989899, 0.020833333333333332, 0.020517676767676768, 0.021780303030303032, 0.021780303030303032, 0.021780303030303032, 0.021464646464646464, 0.021780303030303032, 0.021464646464646464, 0.020833333333333332, 0.022727272727272728, 0.020833333333333332, 0.0211489898989899, 0.021780303030303032, 0.022095959595959596, 0.023989898989898988, 0.023042929292929292, 0.023989898989898988, 0.023989898989898988, 0.024305555555555556, 0.02462121212121212, 0.02462121212121212, 0.02462121212121212, 0.024936868686868688, 0.025252525252525252, 0.025883838383838384, 0.026515151515151516, 0.02683080808080808, 0.027462121212121212, 0.028409090909090908, 0.03851010101010101, 0.046085858585858584, 0.054924242424242424, 0.08017676767676768, 0.12342171717171717, 0.29261363636363635, 0.6253156565656566], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/6PF2K.gap.json b/pfam_gap_rates/6PF2K.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ca9c9edd18edad1a721b0076c02865a94a4f4a62
--- /dev/null
+++ b/pfam_gap_rates/6PF2K.gap.json
@@ -0,0 +1 @@
+{"family": "6PF2K", "n_seqs": 916, "length": 239, "gap_rates": [0.925764192139738, 0.8373362445414847, 0.7609170305676856, 0.7106986899563319, 0.6244541484716157, 0.527292576419214, 0.45633187772925765, 0.34388646288209607, 0.28056768558951967, 0.24563318777292575, 0.2292576419213974, 0.22489082969432314, 0.21943231441048036, 0.21943231441048036, 0.21943231441048036, 0.18777292576419213, 0.18449781659388648, 0.18340611353711792, 0.1812227074235808, 0.1812227074235808, 0.1812227074235808, 0.18013100436681223, 0.18013100436681223, 0.17903930131004367, 0.1779475982532751, 0.185589519650655, 0.18449781659388648, 0.18013100436681223, 0.1812227074235808, 0.18013100436681223, 0.1779475982532751, 0.1779475982532751, 0.17903930131004367, 0.17903930131004367, 0.17903930131004367, 0.17685589519650655, 0.17903930131004367, 0.17139737991266377, 0.1703056768558952, 0.1703056768558952, 0.17139737991266377, 0.1703056768558952, 0.16812227074235808, 0.16593886462882096, 0.16703056768558952, 0.16703056768558952, 0.16703056768558952, 0.1648471615720524, 0.16593886462882096, 0.16812227074235808, 0.16703056768558952, 0.16593886462882096, 0.16048034934497818, 0.15829694323144106, 0.14847161572052403, 0.14301310043668122, 0.13646288209606988, 0.7052401746724891, 0.8024017467248908, 0.9061135371179039, 0.9137554585152838, 0.915938864628821, 0.9093886462882096, 0.888646288209607, 0.75, 0.6528384279475983, 0.24126637554585154, 0.15283842794759825, 0.1539301310043668, 0.1615720524017467, 0.17139737991266377, 0.1539301310043668, 0.1539301310043668, 0.15611353711790393, 0.15283842794759825, 0.15938864628820962, 0.1572052401746725, 0.1572052401746725, 0.1539301310043668, 0.16375545851528384, 0.1648471615720524, 0.16375545851528384, 0.1615720524017467, 0.15938864628820962, 0.15611353711790393, 0.1572052401746725, 0.15829694323144106, 0.15829694323144106, 0.15829694323144106, 0.15829694323144106, 0.1572052401746725, 0.15283842794759825, 0.1539301310043668, 0.15283842794759825, 0.1539301310043668, 0.1539301310043668, 0.15611353711790393, 0.15502183406113537, 0.1539301310043668, 0.15502183406113537, 0.462882096069869, 0.15829694323144106, 0.15829694323144106, 0.16266375545851527, 0.16703056768558952, 0.15938864628820962, 0.16048034934497818, 0.16048034934497818, 0.16266375545851527, 0.16593886462882096, 0.16703056768558952, 0.16593886462882096, 0.16593886462882096, 0.16266375545851527, 0.16266375545851527, 0.1615720524017467, 0.1615720524017467, 0.16048034934497818, 0.16048034934497818, 0.16048034934497818, 0.16266375545851527, 0.15938864628820962, 0.16048034934497818, 0.15938864628820962, 0.15938864628820962, 0.16048034934497818, 0.16048034934497818, 0.16048034934497818, 0.16048034934497818, 0.24017467248908297, 0.7860262008733624, 0.9170305676855895, 0.9497816593886463, 0.8624454148471615, 0.7456331877729258, 0.1703056768558952, 0.15611353711790393, 0.15938864628820962, 0.1615720524017467, 0.1615720524017467, 0.16266375545851527, 0.16375545851528384, 0.16375545851528384, 0.16266375545851527, 0.1615720524017467, 0.16048034934497818, 0.16048034934497818, 0.16048034934497818, 0.1615720524017467, 0.16266375545851527, 0.1615720524017467, 0.16266375545851527, 0.16266375545851527, 0.16048034934497818, 0.16048034934497818, 0.15829694323144106, 0.1539301310043668, 0.15502183406113537, 0.15938864628820962, 0.15829694323144106, 0.15829694323144106, 0.3558951965065502, 0.17248908296943233, 0.17139737991266377, 0.16593886462882096, 0.15502183406113537, 0.15829694323144106, 0.15611353711790393, 0.1572052401746725, 0.1572052401746725, 0.15611353711790393, 0.15611353711790393, 0.8930131004366813, 0.1539301310043668, 0.15283842794759825, 0.14956331877729256, 0.14847161572052403, 0.14847161572052403, 0.14847161572052403, 0.14737991266375547, 0.14737991266375547, 0.14737991266375547, 0.14737991266375547, 0.14737991266375547, 0.14737991266375547, 0.14519650655021835, 0.1462882096069869, 0.1462882096069869, 0.1462882096069869, 0.1462882096069869, 0.14737991266375547, 0.14847161572052403, 0.14956331877729256, 0.777292576419214, 0.5414847161572053, 0.4945414847161572, 0.38209606986899564, 0.1648471615720524, 0.17139737991266377, 0.17467248908296942, 0.17685589519650655, 0.1779475982532751, 0.17903930131004367, 0.17903930131004367, 0.18013100436681223, 0.18340611353711792, 0.18013100436681223, 0.1812227074235808, 0.925764192139738, 0.19323144104803494, 0.1888646288209607, 0.185589519650655, 0.18777292576419213, 0.18777292576419213, 0.19104803493449782, 0.1943231441048035, 0.1965065502183406, 0.19868995633187772, 0.19868995633187772, 0.2019650655021834, 0.9323144104803494, 0.20305676855895197, 0.2096069868995633, 0.20851528384279475, 0.2096069868995633, 0.21179039301310043, 0.21179039301310043, 0.21069868995633187, 0.212882096069869, 0.21506550218340612, 0.21506550218340612, 0.2183406113537118, 0.2205240174672489, 0.22489082969432314, 0.23034934497816595, 0.2390829694323144, 0.2576419213973799, 0.38427947598253276, 0.5524017467248908], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/7TM_GPCR_Srd.gap.json b/pfam_gap_rates/7TM_GPCR_Srd.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..89749f8b53dd817e8bc5f39ad38edaf7d21b9648
--- /dev/null
+++ b/pfam_gap_rates/7TM_GPCR_Srd.gap.json
@@ -0,0 +1 @@
+{"family": "7TM_GPCR_Srd", "n_seqs": 397, "length": 295, "gap_rates": [0.8463476070528967, 0.72544080604534, 0.6498740554156172, 0.6045340050377834, 0.5717884130982368, 0.5541561712846348, 0.5415617128463476, 0.5289672544080605, 0.5289672544080605, 0.5239294710327456, 0.5214105793450882, 0.5214105793450882, 0.5214105793450882, 0.5214105793450882, 0.5188916876574308, 0.5188916876574308, 0.5188916876574308, 0.5163727959697733, 0.5163727959697733, 0.5163727959697733, 0.5163727959697733, 0.5113350125944585, 0.5113350125944585, 0.5012594458438288, 0.5012594458438288, 0.49622166246851385, 0.49622166246851385, 0.49622166246851385, 0.49622166246851385, 0.4987405541561713, 0.4811083123425693, 0.4811083123425693, 0.4811083123425693, 0.4811083123425693, 0.47858942065491183, 0.47858942065491183, 0.47103274559193953, 0.47103274559193953, 0.47103274559193953, 0.47103274559193953, 0.47103274559193953, 0.4609571788413098, 0.4508816120906801, 0.4508816120906801, 0.4508816120906801, 0.44836272040302266, 0.44836272040302266, 0.44836272040302266, 0.44836272040302266, 0.44836272040302266, 0.44836272040302266, 0.44836272040302266, 0.44836272040302266, 0.44836272040302266, 0.44584382871536526, 0.43828715365239296, 0.4332493702770781, 0.43828715365239296, 0.4508816120906801, 0.4534005037783375, 0.9496221662468514, 0.45591939546599497, 0.45843828715365237, 0.4634760705289673, 0.45843828715365237, 0.45843828715365237, 0.45591939546599497, 0.45843828715365237, 0.45591939546599497, 0.45591939546599497, 0.4534005037783375, 0.45591939546599497, 0.45843828715365237, 0.45591939546599497, 0.45591939546599497, 0.4534005037783375, 0.4534005037783375, 0.44836272040302266, 0.44584382871536526, 0.44584382871536526, 0.44836272040302266, 0.4508816120906801, 0.4534005037783375, 0.4534005037783375, 0.45591939546599497, 0.473551637279597, 0.4811083123425693, 0.4811083123425693, 0.4836272040302267, 0.4811083123425693, 0.48614609571788414, 0.48614609571788414, 0.48614609571788414, 0.48866498740554154, 0.48866498740554154, 0.4811083123425693, 0.48614609571788414, 0.4836272040302267, 0.4811083123425693, 0.4836272040302267, 0.48614609571788414, 0.48614609571788414, 0.48614609571788414, 0.48614609571788414, 0.48614609571788414, 0.48866498740554154, 0.48866498740554154, 0.48866498740554154, 0.491183879093199, 0.491183879093199, 0.48866498740554154, 0.4811083123425693, 0.48614609571788414, 0.48614609571788414, 0.48614609571788414, 0.48614609571788414, 0.49370277078085645, 0.8337531486146096, 0.49370277078085645, 0.491183879093199, 0.48614609571788414, 0.4811083123425693, 0.4760705289672544, 0.473551637279597, 0.47103274559193953, 0.46851385390428213, 0.4659949622166247, 0.4634760705289673, 0.4659949622166247, 0.47103274559193953, 0.473551637279597, 0.4760705289672544, 0.4811083123425693, 0.491183879093199, 0.48866498740554154, 0.4811083123425693, 0.47103274559193953, 0.4760705289672544, 0.473551637279597, 0.4760705289672544, 0.46851385390428213, 0.4760705289672544, 0.4760705289672544, 0.4811083123425693, 0.47858942065491183, 0.47103274559193953, 0.473551637279597, 0.47103274559193953, 0.47103274559193953, 0.473551637279597, 0.47103274559193953, 0.47103274559193953, 0.4760705289672544, 0.47103274559193953, 0.4659949622166247, 0.4659949622166247, 0.4609571788413098, 0.4634760705289673, 0.4609571788413098, 0.4760705289672544, 0.4609571788413098, 0.4609571788413098, 0.45591939546599497, 0.4508816120906801, 0.4760705289672544, 0.47103274559193953, 0.47103274559193953, 0.853904282115869, 0.4534005037783375, 0.44080604534005036, 0.44080604534005036, 0.43828715365239296, 0.49370277078085645, 0.45843828715365237, 0.43073047858942065, 0.4357682619647355, 0.4282115869017632, 0.4256926952141058, 0.42317380352644834, 0.44080604534005036, 0.4282115869017632, 0.42317380352644834, 0.4181360201511335, 0.4156171284634761, 0.4282115869017632, 0.41309823677581864, 0.4080604534005038, 0.40554156171284633, 0.40554156171284633, 0.3979848866498741, 0.3979848866498741, 0.40302267002518893, 0.40302267002518893, 0.40302267002518893, 0.3954659949622166, 0.3929471032745592, 0.3929471032745592, 0.3904282115869018, 0.3929471032745592, 0.3904282115869018, 0.3853904282115869, 0.38287153652392947, 0.3853904282115869, 0.3853904282115869, 0.3929471032745592, 0.3954659949622166, 0.3929471032745592, 0.4005037783375315, 0.4005037783375315, 0.3979848866498741, 0.4005037783375315, 0.40302267002518893, 0.5667506297229219, 0.5012594458438288, 0.4811083123425693, 0.4256926952141058, 0.38287153652392947, 0.3677581863979849, 0.36523929471032746, 0.36523929471032746, 0.3702770780856423, 0.3677581863979849, 0.3677581863979849, 0.3702770780856423, 0.3702770780856423, 0.36523929471032746, 0.3602015113350126, 0.35516372795969775, 0.3501259445843829, 0.33249370277078083, 0.35516372795969775, 0.36272040302267, 0.3602015113350126, 0.3526448362720403, 0.35516372795969775, 0.35516372795969775, 0.3501259445843829, 0.3501259445843829, 0.3526448362720403, 0.3526448362720403, 0.3526448362720403, 0.3526448362720403, 0.3526448362720403, 0.3526448362720403, 0.6926952141057935, 0.3501259445843829, 0.34760705289672544, 0.34760705289672544, 0.3501259445843829, 0.3526448362720403, 0.3526448362720403, 0.35768261964735515, 0.3501259445843829, 0.3501259445843829, 0.3602015113350126, 0.3778337531486146, 0.35516372795969775, 0.35516372795969775, 0.35768261964735515, 0.35516372795969775, 0.35768261964735515, 0.35768261964735515, 0.35768261964735515, 0.3602015113350126, 0.35768261964735515, 0.35768261964735515, 0.3602015113350126, 0.37279596977329976, 0.3778337531486146, 0.380352644836272, 0.3853904282115869, 0.3853904282115869, 0.3929471032745592, 0.3929471032745592, 0.3929471032745592, 0.3979848866498741, 0.3979848866498741, 0.3979848866498741, 0.3979848866498741, 0.4005037783375315, 0.4005037783375315, 0.40554156171284633, 0.40554156171284633, 0.4080604534005038, 0.4105793450881612, 0.41309823677581864, 0.42317380352644834, 0.4256926952141058, 0.4282115869017632, 0.4282115869017632, 0.4332493702770781, 0.4534005037783375, 0.47103274559193953, 0.5869017632241813, 0.8463476070528967], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/7TM_GPCR_Srh.gap.json b/pfam_gap_rates/7TM_GPCR_Srh.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..bc022d0298187f17cd3f4c0cf8364cf35e99fc67
--- /dev/null
+++ b/pfam_gap_rates/7TM_GPCR_Srh.gap.json
@@ -0,0 +1 @@
+{"family": "7TM_GPCR_Srh", "n_seqs": 384, "length": 317, "gap_rates": [0.6822916666666666, 0.4427083333333333, 0.3697916666666667, 0.328125, 0.3072916666666667, 0.2890625, 0.2864583333333333, 0.2786458333333333, 0.2708333333333333, 0.265625, 0.2630208333333333, 0.2630208333333333, 0.2578125, 0.2552083333333333, 0.25, 0.25, 0.25, 0.24479166666666666, 0.24479166666666666, 0.24739583333333334, 0.24479166666666666, 0.24479166666666666, 0.24479166666666666, 0.2421875, 0.23958333333333334, 0.23958333333333334, 0.2421875, 0.23958333333333334, 0.23958333333333334, 0.23697916666666666, 0.23697916666666666, 0.23697916666666666, 0.23697916666666666, 0.23697916666666666, 0.23697916666666666, 0.2265625, 0.22916666666666666, 0.2265625, 0.2265625, 0.22395833333333334, 0.22916666666666666, 0.2265625, 0.2265625, 0.22395833333333334, 0.22395833333333334, 0.22135416666666666, 0.22395833333333334, 0.22395833333333334, 0.22135416666666666, 0.21354166666666666, 0.2109375, 0.2109375, 0.21614583333333334, 0.21614583333333334, 0.21614583333333334, 0.21614583333333334, 0.21614583333333334, 0.21354166666666666, 0.2109375, 0.2109375, 0.20833333333333334, 0.20833333333333334, 0.20833333333333334, 0.20572916666666666, 0.20572916666666666, 0.20572916666666666, 0.20572916666666666, 0.20572916666666666, 0.21354166666666666, 0.20572916666666666, 0.20572916666666666, 0.203125, 0.20572916666666666, 0.20572916666666666, 0.20572916666666666, 0.20572916666666666, 0.20572916666666666, 0.20572916666666666, 0.20572916666666666, 0.20833333333333334, 0.20833333333333334, 0.9479166666666666, 0.3359375, 0.3046875, 0.2994791666666667, 0.2630208333333333, 0.19791666666666666, 0.203125, 0.20052083333333334, 0.20052083333333334, 0.20052083333333334, 0.20052083333333334, 0.19791666666666666, 0.19791666666666666, 0.19791666666666666, 0.1953125, 0.1953125, 0.203125, 0.203125, 0.20052083333333334, 0.19791666666666666, 0.19791666666666666, 0.1953125, 0.19270833333333334, 0.19010416666666666, 0.19010416666666666, 0.19010416666666666, 0.19270833333333334, 0.19270833333333334, 0.1953125, 0.1953125, 0.19270833333333334, 0.19270833333333334, 0.19010416666666666, 0.1875, 0.1875, 0.3203125, 0.19010416666666666, 0.2734375, 0.2526041666666667, 0.9296875, 0.796875, 0.5130208333333334, 0.22916666666666666, 0.19791666666666666, 0.19791666666666666, 0.19791666666666666, 0.1953125, 0.19270833333333334, 0.9453125, 0.8619791666666666, 0.18489583333333334, 0.1875, 0.18489583333333334, 0.18489583333333334, 0.18489583333333334, 0.18489583333333334, 0.18489583333333334, 0.1875, 0.1875, 0.1875, 0.19010416666666666, 0.1875, 0.18489583333333334, 0.18489583333333334, 0.1875, 0.19270833333333334, 0.21614583333333334, 0.18489583333333334, 0.18489583333333334, 0.18489583333333334, 0.18489583333333334, 0.9375, 0.19270833333333334, 0.19010416666666666, 0.1875, 0.8203125, 0.1875, 0.19010416666666666, 0.19010416666666666, 0.1875, 0.1875, 0.18489583333333334, 0.19010416666666666, 0.18229166666666666, 0.1796875, 0.17447916666666666, 0.17708333333333334, 0.18229166666666666, 0.171875, 0.17708333333333334, 0.18229166666666666, 0.1875, 0.19270833333333334, 0.23958333333333334, 0.21354166666666666, 0.18489583333333334, 0.234375, 0.17708333333333334, 0.53125, 0.17708333333333334, 0.16666666666666666, 0.16145833333333334, 0.1640625, 0.15885416666666666, 0.16145833333333334, 0.16145833333333334, 0.1640625, 0.921875, 0.16666666666666666, 0.16666666666666666, 0.15364583333333334, 0.7994791666666666, 0.828125, 0.7526041666666666, 0.16145833333333334, 0.16927083333333334, 0.15364583333333334, 0.14583333333333334, 0.14322916666666666, 0.140625, 0.140625, 0.140625, 0.13802083333333334, 0.13802083333333334, 0.1328125, 0.13020833333333334, 0.12760416666666666, 0.12760416666666666, 0.12760416666666666, 0.12760416666666666, 0.12760416666666666, 0.125, 0.125, 0.125, 0.125, 0.125, 0.125, 0.12760416666666666, 0.125, 0.13020833333333334, 0.125, 0.125, 0.12239583333333333, 0.12239583333333333, 0.11979166666666667, 0.3098958333333333, 0.3333333333333333, 0.9192708333333334, 0.9375, 0.7317708333333334, 0.1640625, 0.1171875, 0.11458333333333333, 0.1171875, 0.1171875, 0.11458333333333333, 0.11197916666666667, 0.11458333333333333, 0.11458333333333333, 0.11197916666666667, 0.109375, 0.109375, 0.109375, 0.109375, 0.109375, 0.11197916666666667, 0.11197916666666667, 0.10677083333333333, 0.10677083333333333, 0.10416666666666667, 0.10416666666666667, 0.10677083333333333, 0.10416666666666667, 0.10677083333333333, 0.109375, 0.11197916666666667, 0.11197916666666667, 0.1171875, 0.12760416666666666, 0.13020833333333334, 0.12760416666666666, 0.125, 0.125, 0.125, 0.125, 0.125, 0.12760416666666666, 0.13541666666666666, 0.13802083333333334, 0.1328125, 0.15104166666666666, 0.14583333333333334, 0.14322916666666666, 0.9244791666666666, 0.14322916666666666, 0.15625, 0.1640625, 0.15625, 0.1640625, 0.16145833333333334, 0.16666666666666666, 0.16666666666666666, 0.16666666666666666, 0.16666666666666666, 0.16927083333333334, 0.16927083333333334, 0.17447916666666666, 0.1796875, 0.18229166666666666, 0.18229166666666666, 0.18489583333333334, 0.18489583333333334, 0.1875, 0.19010416666666666, 0.19010416666666666, 0.19010416666666666, 0.19010416666666666, 0.19270833333333334, 0.19791666666666666, 0.19791666666666666, 0.19791666666666666, 0.19791666666666666, 0.20052083333333334, 0.203125, 0.203125, 0.203125, 0.203125, 0.203125, 0.20572916666666666, 0.20833333333333334, 0.2265625, 0.23958333333333334, 0.2552083333333333, 0.2916666666666667, 0.4609375, 0.9010416666666666], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/AAA_3.gap.json b/pfam_gap_rates/AAA_3.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..6a022eaf65d38cf5618423eef95d77efe032be6d
--- /dev/null
+++ b/pfam_gap_rates/AAA_3.gap.json
@@ -0,0 +1 @@
+{"family": "AAA_3", "n_seqs": 2858, "length": 135, "gap_rates": [0.06857942617214835, 0.026242127361791462, 0.021693491952414275, 0.020643806857942617, 0.020293911826452064, 0.020293911826452064, 0.01959412176347096, 0.01959412176347096, 0.01959412176347096, 0.01959412176347096, 0.01959412176347096, 0.019244226731980407, 0.019244226731980407, 0.019244226731980407, 0.017844646606018196, 0.017844646606018196, 0.017844646606018196, 0.017844646606018196, 0.017844646606018196, 0.017844646606018196, 0.01749475157452764, 0.01749475157452764, 0.017144856543037088, 0.017144856543037088, 0.016445066480055982, 0.01609517144856543, 0.015745276417074877, 0.01609517144856543, 0.01609517144856543, 0.015045486354093772, 0.01609517144856543, 0.015045486354093772, 0.01469559132260322, 0.015395381385584325, 0.015395381385584325, 0.014345696291112667, 0.01364590622813156, 0.01364590622813156, 0.01364590622813156, 0.013995801259622114, 0.014345696291112667, 0.014345696291112667, 0.015395381385584325, 0.015395381385584325, 0.015395381385584325, 0.015045486354093772, 0.015045486354093772, 0.01469559132260322, 0.01994401679496151, 0.03498950314905528, 0.03673897830650805, 0.834149755073478, 0.9485654303708887, 0.8614415675297411, 0.8285514345696291, 0.01749475157452764, 0.015745276417074877, 0.013995801259622114, 0.01364590622813156, 0.01364590622813156, 0.013995801259622114, 0.013995801259622114, 0.013995801259622114, 0.014345696291112667, 0.014345696291112667, 0.013296011196641007, 0.013296011196641007, 0.013296011196641007, 0.00979706088173548, 0.00979706088173548, 0.009097270818754374, 0.009097270818754374, 0.009097270818754374, 0.00874737578726382, 0.00874737578726382, 0.00874737578726382, 0.00874737578726382, 0.00874737578726382, 0.008397480755773267, 0.008397480755773267, 0.008047585724282715, 0.008047585724282715, 0.008397480755773267, 0.008397480755773267, 0.008397480755773267, 0.00874737578726382, 0.00874737578726382, 0.008397480755773267, 0.008397480755773267, 0.007697690692792162, 0.007697690692792162, 0.007697690692792162, 0.007697690692792162, 0.008047585724282715, 0.00874737578726382, 0.00874737578726382, 0.014345696291112667, 0.014345696291112667, 0.015745276417074877, 0.015395381385584325, 0.010146955913226032, 0.010496850944716585, 0.01119664100769769, 0.01119664100769769, 0.010846745976207137, 0.01224632610216935, 0.026242127361791462, 0.01224632610216935, 0.01119664100769769, 0.010496850944716585, 0.009447165850244927, 0.012946116165150455, 0.009447165850244927, 0.00979706088173548, 0.009447165850244927, 0.011546536039188244, 0.011896431070678797, 0.010496850944716585, 0.01119664100769769, 0.010846745976207137, 0.010846745976207137, 0.01119664100769769, 0.015395381385584325, 0.01469559132260322, 0.01469559132260322, 0.015745276417074877, 0.01609517144856543, 0.017144856543037088, 0.01749475157452764, 0.017844646606018196, 0.017844646606018196, 0.017844646606018196, 0.01819454163750875, 0.03079076277116865, 0.13540937718684395], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/AAA_PrkA.gap.json b/pfam_gap_rates/AAA_PrkA.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..9f3b2775faf849cd855031f94d874395a0af33c3
--- /dev/null
+++ b/pfam_gap_rates/AAA_PrkA.gap.json
@@ -0,0 +1 @@
+{"family": "AAA_PrkA", "n_seqs": 514, "length": 394, "gap_rates": [0.8365758754863813, 0.1926070038910506, 0.17704280155642024, 0.17704280155642024, 0.17509727626459143, 0.17509727626459143, 0.17509727626459143, 0.17509727626459143, 0.17509727626459143, 0.17509727626459143, 0.17509727626459143, 0.17509727626459143, 0.17509727626459143, 0.17509727626459143, 0.17315175097276264, 0.17315175097276264, 0.17315175097276264, 0.17315175097276264, 0.17315175097276264, 0.17315175097276264, 0.17315175097276264, 0.17315175097276264, 0.17315175097276264, 0.17120622568093385, 0.17120622568093385, 0.17120622568093385, 0.16926070038910507, 0.16926070038910507, 0.16926070038910507, 0.16926070038910507, 0.16926070038910507, 0.556420233463035, 0.556420233463035, 0.17120622568093385, 0.2840466926070039, 0.4591439688715953, 0.4474708171206226, 0.4455252918287938, 0.44163424124513617, 0.44357976653696496, 0.45330739299610895, 0.45330739299610895, 0.4494163424124514, 0.4455252918287938, 0.44357976653696496, 0.4357976653696498, 0.42412451361867703, 0.41245136186770426, 0.2782101167315175, 0.1867704280155642, 0.17120622568093385, 0.17509727626459143, 0.188715953307393, 0.188715953307393, 0.1828793774319066, 0.1867704280155642, 0.17704280155642024, 0.16731517509727625, 0.15369649805447472, 0.14785992217898833, 0.5389105058365758, 0.14396887159533073, 0.14396887159533073, 0.14396887159533073, 0.14396887159533073, 0.14396887159533073, 0.14396887159533073, 0.14396887159533073, 0.14396887159533073, 0.14591439688715954, 0.14591439688715954, 0.14396887159533073, 0.14396887159533073, 0.14202334630350194, 0.14202334630350194, 0.7626459143968871, 0.14202334630350194, 0.14202334630350194, 0.14202334630350194, 0.14202334630350194, 0.14202334630350194, 0.14202334630350194, 0.14202334630350194, 0.14202334630350194, 0.13813229571984437, 0.13813229571984437, 0.14007782101167315, 0.14007782101167315, 0.13813229571984437, 0.13813229571984437, 0.13813229571984437, 0.13813229571984437, 0.13813229571984437, 0.13813229571984437, 0.13618677042801555, 0.13618677042801555, 0.13618677042801555, 0.13618677042801555, 0.13618677042801555, 0.13618677042801555, 0.13229571984435798, 0.13229571984435798, 0.1303501945525292, 0.1303501945525292, 0.1303501945525292, 0.1303501945525292, 0.1303501945525292, 0.1303501945525292, 0.13229571984435798, 0.13424124513618677, 0.13618677042801555, 0.13229571984435798, 0.12840466926070038, 0.12840466926070038, 0.12840466926070038, 0.13229571984435798, 0.6147859922178989, 0.6206225680933852, 0.622568093385214, 0.622568093385214, 0.6147859922178989, 0.5389105058365758, 0.1264591439688716, 0.1264591439688716, 0.1264591439688716, 0.1264591439688716, 0.1264591439688716, 0.7334630350194552, 0.7334630350194552, 0.8832684824902723, 0.8852140077821011, 0.8949416342412452, 0.8988326848249028, 0.9105058365758755, 0.9105058365758755, 0.9455252918287937, 0.9299610894941635, 0.9105058365758755, 0.8988326848249028, 0.896887159533074, 0.8891050583657587, 0.8852140077821011, 0.8813229571984436, 0.7334630350194552, 0.7334630350194552, 0.1245136186770428, 0.11867704280155641, 0.11089494163424124, 0.11089494163424124, 0.11089494163424124, 0.11089494163424124, 0.11089494163424124, 0.11089494163424124, 0.11089494163424124, 0.11284046692607004, 0.11284046692607004, 0.11284046692607004, 0.11284046692607004, 0.603112840466926, 0.11089494163424124, 0.11089494163424124, 0.11284046692607004, 0.11089494163424124, 0.11089494163424124, 0.11089494163424124, 0.11284046692607004, 0.11284046692607004, 0.11284046692607004, 0.11284046692607004, 0.11284046692607004, 0.11284046692607004, 0.11284046692607004, 0.11089494163424124, 0.48443579766536965, 0.8754863813229572, 0.8793774319066148, 0.9007782101167315, 0.9416342412451362, 0.8793774319066148, 0.8793774319066148, 0.48638132295719844, 0.4805447470817121, 0.10894941634241245, 0.10700389105058365, 0.10700389105058365, 0.10505836575875487, 0.10505836575875487, 0.10505836575875487, 0.10505836575875487, 0.10311284046692606, 0.10311284046692606, 0.10116731517509728, 0.09727626459143969, 0.09727626459143969, 0.09727626459143969, 0.0933852140077821, 0.4961089494163424, 0.0933852140077821, 0.0933852140077821, 0.0933852140077821, 0.0933852140077821, 0.0933852140077821, 0.0933852140077821, 0.0914396887159533, 0.08754863813229571, 0.08560311284046693, 0.08365758754863813, 0.08560311284046693, 0.08365758754863813, 0.08365758754863813, 0.08365758754863813, 0.08171206225680934, 0.07782101167315175, 0.07782101167315175, 0.07782101167315175, 0.07782101167315175, 0.07782101167315175, 0.07587548638132295, 0.07392996108949416, 0.07587548638132295, 0.07587548638132295, 0.06809338521400778, 0.058365758754863814, 0.058365758754863814, 0.058365758754863814, 0.058365758754863814, 0.0622568093385214, 0.06031128404669261, 0.06420233463035019, 0.06614785992217899, 0.06420233463035019, 0.06614785992217899, 0.0622568093385214, 0.07003891050583658, 0.07003891050583658, 0.06420233463035019, 0.054474708171206226, 0.05642023346303502, 0.05642023346303502, 0.058365758754863814, 0.058365758754863814, 0.05642023346303502, 0.058365758754863814, 0.06614785992217899, 0.05642023346303502, 0.054474708171206226, 0.054474708171206226, 0.054474708171206226, 0.054474708171206226, 0.06420233463035019, 0.622568093385214, 0.05642023346303502, 0.054474708171206226, 0.054474708171206226, 0.054474708171206226, 0.054474708171206226, 0.054474708171206226, 0.054474708171206226, 0.054474708171206226, 0.054474708171206226, 0.054474708171206226, 0.058365758754863814, 0.07392996108949416, 0.058365758754863814, 0.05642023346303502, 0.054474708171206226, 0.054474708171206226, 0.054474708171206226, 0.054474708171206226, 0.07003891050583658, 0.058365758754863814, 0.05642023346303502, 0.054474708171206226, 0.054474708171206226, 0.054474708171206226, 0.054474708171206226, 0.054474708171206226, 0.048638132295719845, 0.048638132295719845, 0.048638132295719845, 0.048638132295719845, 0.048638132295719845, 0.048638132295719845, 0.048638132295719845, 0.048638132295719845, 0.048638132295719845, 0.048638132295719845, 0.05058365758754864, 0.05058365758754864, 0.048638132295719845, 0.048638132295719845, 0.048638132295719845, 0.048638132295719845, 0.05058365758754864, 0.05058365758754864, 0.05058365758754864, 0.05058365758754864, 0.05058365758754864, 0.05058365758754864, 0.05058365758754864, 0.48638132295719844, 0.11478599221789883, 0.0622568093385214, 0.0622568093385214, 0.05252918287937743, 0.0622568093385214, 0.08171206225680934, 0.05642023346303502, 0.05252918287937743, 0.05252918287937743, 0.048638132295719845, 0.04474708171206226, 0.04669260700389105, 0.048638132295719845, 0.054474708171206226, 0.05642023346303502, 0.058365758754863814, 0.058365758754863814, 0.06031128404669261, 0.06031128404669261, 0.058365758754863814, 0.0622568093385214, 0.06809338521400778, 0.07198443579766536, 0.07587548638132295, 0.07587548638132295, 0.07198443579766536, 0.07782101167315175, 0.07782101167315175, 0.07003891050583658, 0.0622568093385214, 0.0622568093385214, 0.0622568093385214, 0.0622568093385214, 0.0622568093385214, 0.0622568093385214, 0.0622568093385214, 0.0622568093385214, 0.058365758754863814, 0.058365758754863814, 0.058365758754863814, 0.06031128404669261, 0.058365758754863814, 0.058365758754863814, 0.0622568093385214, 0.06420233463035019, 0.07587548638132295, 0.07587548638132295, 0.07976653696498054, 0.07976653696498054, 0.07976653696498054, 0.07976653696498054, 0.08365758754863813, 0.08365758754863813, 0.08949416342412451, 0.0914396887159533, 0.09533073929961089, 0.09727626459143969, 0.09533073929961089, 0.09922178988326848, 0.09727626459143969, 0.10505836575875487, 0.13618677042801555, 0.10311284046692606, 0.10505836575875487, 0.2490272373540856, 0.10116731517509728, 0.09727626459143969, 0.09727626459143969, 0.09727626459143969, 0.09922178988326848, 0.09922178988326848, 0.09922178988326848, 0.10116731517509728, 0.10116731517509728, 0.10116731517509728, 0.10116731517509728, 0.10116731517509728, 0.10116731517509728, 0.10116731517509728, 0.10116731517509728, 0.10116731517509728, 0.10116731517509728, 0.10116731517509728, 0.10116731517509728, 0.10116731517509728, 0.10311284046692606, 0.10505836575875487, 0.11089494163424124, 0.11867704280155641, 0.13813229571984437, 0.20038910505836577, 0.4260700389105058, 0.5739299610894941], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/AAT.gap.json b/pfam_gap_rates/AAT.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..dc0241b276ba83ba9b397f0140fbdff987df8bef
--- /dev/null
+++ b/pfam_gap_rates/AAT.gap.json
@@ -0,0 +1 @@
+{"family": "AAT", "n_seqs": 611, "length": 280, "gap_rates": [0.9312602291325696, 0.8821603927986906, 0.7741407528641571, 0.5990180032733224, 0.4288052373158756, 0.3109656301145663, 0.2193126022913257, 0.6923076923076923, 0.12929623567921442, 0.10638297872340426, 0.10147299509001637, 0.09819967266775777, 0.09656301145662848, 0.09656301145662848, 0.09656301145662848, 0.8952536824877251, 0.8723404255319149, 0.09656301145662848, 0.09983633387888707, 0.10147299509001637, 0.09819967266775777, 0.09656301145662848, 0.09492635024549918, 0.09983633387888707, 0.09328968903436989, 0.09328968903436989, 0.09001636661211129, 0.08183306055646482, 0.08019639934533551, 0.08183306055646482, 0.08019639934533551, 0.08183306055646482, 0.2144026186579378, 0.309328968903437, 0.6121112929623568, 0.8641571194762684, 0.9034369885433715, 0.9459901800327333, 0.9492635024549918, 0.9476268412438625, 0.9296235679214403, 0.8772504091653028, 0.8265139116202946, 0.5531914893617021, 0.09165302782324058, 0.07364975450081833, 0.07364975450081833, 0.07201309328968904, 0.07364975450081833, 0.06382978723404255, 0.062193126022913256, 0.062193126022913256, 0.8412438625204582, 0.9443535188216039, 0.8183306055646481, 0.05564648117839607, 0.054009819967266774, 0.05073649754500818, 0.049099836333878884, 0.3911620294599018, 0.9328968903436988, 0.1276595744680851, 0.05564648117839607, 0.04746317512274959, 0.2569558101472995, 0.031096563011456628, 0.029459901800327332, 0.029459901800327332, 0.029459901800327332, 0.027823240589198037, 0.0425531914893617, 0.029459901800327332, 0.029459901800327332, 0.027823240589198037, 0.027823240589198037, 0.031096563011456628, 0.8968903436988543, 0.9099836333878887, 0.9312602291325696, 0.9443535188216039, 0.9361702127659575, 0.9181669394435352, 0.9050736497545008, 0.8805237315875614, 0.031096563011456628, 0.031096563011456628, 0.029459901800327332, 0.031096563011456628, 0.031096563011456628, 0.03273322422258593, 0.03273322422258593, 0.03600654664484452, 0.9443535188216039, 0.43044189852700493, 0.044189852700491, 0.03436988543371522, 0.029459901800327332, 0.029459901800327332, 0.031096563011456628, 0.031096563011456628, 0.031096563011456628, 0.03273322422258593, 0.03273322422258593, 0.03273322422258593, 0.03436988543371522, 0.029459901800327332, 0.027823240589198037, 0.027823240589198037, 0.027823240589198037, 0.5040916530278232, 0.03436988543371522, 0.027823240589198037, 0.02618657937806874, 0.02618657937806874, 0.02618657937806874, 0.02618657937806874, 0.02618657937806874, 0.02618657937806874, 0.024549918166939442, 0.024549918166939442, 0.027823240589198037, 0.029459901800327332, 0.029459901800327332, 0.02618657937806874, 0.8919803600654664, 0.9230769230769231, 0.9067103109656302, 0.8805237315875614, 0.027823240589198037, 0.03436988543371522, 0.024549918166939442, 0.027823240589198037, 0.02618657937806874, 0.022913256955810146, 0.024549918166939442, 0.02618657937806874, 0.027823240589198037, 0.09983633387888707, 0.02618657937806874, 0.02618657937806874, 0.027823240589198037, 0.027823240589198037, 0.1342062193126023, 0.04746317512274959, 0.03436988543371522, 0.03927986906710311, 0.08183306055646482, 0.0425531914893617, 0.044189852700491, 0.04746317512274959, 0.04582651391162029, 0.05237315875613748, 0.04746317512274959, 0.049099836333878884, 0.05073649754500818, 0.3993453355155483, 0.24222585924713586, 0.8805237315875614, 0.9034369885433715, 0.9247135842880524, 0.939443535188216, 0.911620294599018, 0.8952536824877251, 0.8527004909983633, 0.060556464811783964, 0.06873977086743044, 0.06546644844517185, 0.07364975450081833, 0.07201309328968904, 0.058919803600654665, 0.8101472995090017, 0.9181669394435352, 0.6415711947626841, 0.25859247135842883, 0.18985270049099837, 0.16202945990180032, 0.06710310965630115, 0.05564648117839607, 0.057283142389525366, 0.057283142389525366, 0.058919803600654665, 0.07037643207855974, 0.9181669394435352, 0.9361702127659575, 0.9230769230769231, 0.9050736497545008, 0.22422258592471359, 0.2127659574468085, 0.10310965630114566, 0.09492635024549918, 0.088379705400982, 0.09165302782324058, 0.09983633387888707, 0.10310965630114566, 0.18985270049099837, 0.7659574468085106, 0.8870703764320785, 0.8379705400981997, 0.7299509001636661, 0.132569558101473, 0.13747954173486088, 0.10965630114566285, 0.10310965630114566, 0.09492635024549918, 0.10147299509001637, 0.09165302782324058, 0.09492635024549918, 0.09656301145662848, 0.09819967266775777, 0.09492635024549918, 0.09656301145662848, 0.09656301145662848, 0.09656301145662848, 0.09492635024549918, 0.09656301145662848, 0.09983633387888707, 0.10965630114566285, 0.10310965630114566, 0.10638297872340426, 0.10801963993453355, 0.11129296235679215, 0.11783960720130933, 0.1276595744680851, 0.5433715220949263, 0.8854337152209493, 0.9443535188216039, 0.9067103109656302, 0.6808510638297872, 0.4795417348608838, 0.3142389525368249, 0.2160392798690671, 0.15384615384615385, 0.14402618657937807, 0.1407528641571195, 0.14402618657937807, 0.14729950900163666, 0.14893617021276595, 0.16039279869067102, 0.16366612111292964, 0.16693944353518822, 0.1718494271685761, 0.2765957446808511, 0.2553191489361702, 0.22913256955810146, 0.22913256955810146, 0.45662847790507366, 0.4451718494271686, 0.44844517184942717, 0.44353518821603927, 0.7283142389525368, 0.33878887070376434, 0.3142389525368249, 0.3011456628477905, 0.25859247135842883, 0.2602291325695581, 0.2684124386252046, 0.2602291325695581, 0.25368248772504093, 0.25368248772504093, 0.25859247135842883, 0.2602291325695581, 0.265139116202946, 0.265139116202946, 0.2684124386252046, 0.2733224222585925, 0.28314238952536824, 0.2864157119476268, 0.28805237315875615, 0.2945990180032733, 0.3011456628477905, 0.3076923076923077, 0.3158756137479542, 0.33060556464811786, 0.34206219312602293, 0.38461538461538464, 0.41243862520458263, 0.44189852700491, 0.5155482815057283, 0.5728314238952537, 0.79050736497545], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/AA_permease_C.gap.json b/pfam_gap_rates/AA_permease_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..37490f518780017c4326196c25def897f589737d
--- /dev/null
+++ b/pfam_gap_rates/AA_permease_C.gap.json
@@ -0,0 +1 @@
+{"family": "AA_permease_C", "n_seqs": 723, "length": 51, "gap_rates": [0.10096818810511757, 0.08022130013831259, 0.06915629322268327, 0.0677731673582296, 0.0677731673582296, 0.0677731673582296, 0.0677731673582296, 0.013831258644536652, 0.011065006915629323, 0.009681881051175657, 0.009681881051175657, 0.008298755186721992, 0.008298755186721992, 0.008298755186721992, 0.009681881051175657, 0.009681881051175657, 0.009681881051175657, 0.006915629322268326, 0.005532503457814661, 0.004149377593360996, 0.0027662517289073307, 0.0027662517289073307, 0.0013831258644536654, 0.0013831258644536654, 0.0027662517289073307, 0.009681881051175657, 0.009681881051175657, 0.011065006915629323, 0.011065006915629323, 0.011065006915629323, 0.011065006915629323, 0.011065006915629323, 0.011065006915629323, 0.011065006915629323, 0.011065006915629323, 0.011065006915629323, 0.011065006915629323, 0.012448132780082987, 0.019363762102351315, 0.035961272475795295, 0.04702627939142462, 0.04702627939142462, 0.048409405255878286, 0.051175656984785614, 0.06085753803596127, 0.06915629322268327, 0.07330567081604426, 0.07468879668049792, 0.08298755186721991, 0.14246196403872752, 0.27247579529737204], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/AA_synth.gap.json b/pfam_gap_rates/AA_synth.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d0b0963d6690b7dc9c24ad12f5e9b5723d6c9e5c
--- /dev/null
+++ b/pfam_gap_rates/AA_synth.gap.json
@@ -0,0 +1 @@
+{"family": "AA_synth", "n_seqs": 170, "length": 179, "gap_rates": [0.03529411764705882, 0.01764705882352941, 0.01764705882352941, 0.01764705882352941, 0.01764705882352941, 0.01764705882352941, 0.01764705882352941, 0.011764705882352941, 0.011764705882352941, 0.011764705882352941, 0.011764705882352941, 0.011764705882352941, 0.011764705882352941, 0.011764705882352941, 0.011764705882352941, 0.01764705882352941, 0.011764705882352941, 0.011764705882352941, 0.011764705882352941, 0.01764705882352941, 0.01764705882352941, 0.011764705882352941, 0.011764705882352941, 0.011764705882352941, 0.011764705882352941, 0.011764705882352941, 0.011764705882352941, 0.011764705882352941, 0.011764705882352941, 0.011764705882352941, 0.011764705882352941, 0.011764705882352941, 0.011764705882352941, 0.011764705882352941, 0.011764705882352941, 0.011764705882352941, 0.011764705882352941, 0.011764705882352941, 0.011764705882352941, 0.6588235294117647, 0.01764705882352941, 0.011764705882352941, 0.011764705882352941, 0.011764705882352941, 0.011764705882352941, 0.011764705882352941, 0.011764705882352941, 0.6294117647058823, 0.011764705882352941, 0.011764705882352941, 0.011764705882352941, 0.011764705882352941, 0.011764705882352941, 0.011764705882352941, 0.011764705882352941, 0.011764705882352941, 0.011764705882352941, 0.011764705882352941, 0.011764705882352941, 0.011764705882352941, 0.011764705882352941, 0.011764705882352941, 0.011764705882352941, 0.0, 0.0, 0.0, 0.0, 0.0058823529411764705, 0.0058823529411764705, 0.0058823529411764705, 0.6, 0.2235294117647059, 0.1, 0.0058823529411764705, 0.0058823529411764705, 0.0058823529411764705, 0.0058823529411764705, 0.0058823529411764705, 0.0058823529411764705, 0.0058823529411764705, 0.0058823529411764705, 0.0058823529411764705, 0.0058823529411764705, 0.0058823529411764705, 0.0058823529411764705, 0.0058823529411764705, 0.0058823529411764705, 0.011764705882352941, 0.011764705882352941, 0.011764705882352941, 0.011764705882352941, 0.011764705882352941, 0.011764705882352941, 0.27058823529411763, 0.011764705882352941, 0.011764705882352941, 0.011764705882352941, 0.011764705882352941, 0.011764705882352941, 0.6176470588235294, 0.011764705882352941, 0.011764705882352941, 0.011764705882352941, 0.011764705882352941, 0.011764705882352941, 0.011764705882352941, 0.011764705882352941, 0.011764705882352941, 0.011764705882352941, 0.011764705882352941, 0.3941176470588235, 0.011764705882352941, 0.011764705882352941, 0.011764705882352941, 0.011764705882352941, 0.011764705882352941, 0.011764705882352941, 0.011764705882352941, 0.011764705882352941, 0.011764705882352941, 0.011764705882352941, 0.011764705882352941, 0.011764705882352941, 0.011764705882352941, 0.011764705882352941, 0.011764705882352941, 0.011764705882352941, 0.011764705882352941, 0.011764705882352941, 0.011764705882352941, 0.011764705882352941, 0.011764705882352941, 0.011764705882352941, 0.011764705882352941, 0.011764705882352941, 0.011764705882352941, 0.011764705882352941, 0.011764705882352941, 0.011764705882352941, 0.011764705882352941, 0.011764705882352941, 0.011764705882352941, 0.011764705882352941, 0.011764705882352941, 0.011764705882352941, 0.011764705882352941, 0.011764705882352941, 0.011764705882352941, 0.011764705882352941, 0.011764705882352941, 0.011764705882352941, 0.011764705882352941, 0.011764705882352941, 0.011764705882352941, 0.011764705882352941, 0.011764705882352941, 0.011764705882352941, 0.011764705882352941, 0.011764705882352941, 0.011764705882352941, 0.011764705882352941, 0.011764705882352941, 0.011764705882352941, 0.011764705882352941, 0.011764705882352941, 0.011764705882352941, 0.011764705882352941, 0.011764705882352941, 0.011764705882352941, 0.011764705882352941, 0.011764705882352941, 0.01764705882352941, 0.01764705882352941, 0.01764705882352941, 0.01764705882352941, 0.01764705882352941, 0.01764705882352941, 0.023529411764705882, 0.12352941176470589], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/ABATE.gap.json b/pfam_gap_rates/ABATE.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ca7ee9c4f3847e8ee132fdb40f53bcb921a868a3
--- /dev/null
+++ b/pfam_gap_rates/ABATE.gap.json
@@ -0,0 +1 @@
+{"family": "ABATE", "n_seqs": 502, "length": 157, "gap_rates": [0.7270916334661355, 0.48804780876494025, 0.2450199203187251, 0.12151394422310757, 0.09362549800796813, 0.061752988047808766, 0.053784860557768925, 0.04780876494023904, 0.04183266932270916, 0.043824701195219126, 0.8725099601593626, 0.9302788844621513, 0.6892430278884463, 0.33665338645418325, 0.3605577689243028, 0.2051792828685259, 0.1852589641434263, 0.15139442231075698, 0.10159362549800798, 0.07370517928286853, 0.05976095617529881, 0.0398406374501992, 0.037848605577689244, 0.025896414342629483, 0.021912350597609563, 0.0199203187250996, 0.01593625498007968, 0.017928286852589643, 0.01593625498007968, 0.0199203187250996, 0.013944223107569721, 0.013944223107569721, 0.01195219123505976, 0.01195219123505976, 0.0099601593625498, 0.0099601593625498, 0.013944223107569721, 0.14741035856573706, 0.12350597609561753, 0.09362549800796813, 0.07370517928286853, 0.03386454183266932, 0.03187250996015936, 0.049800796812749, 0.07171314741035857, 0.0697211155378486, 0.07370517928286853, 0.07569721115537849, 0.13346613545816732, 0.2788844621513944, 0.4800796812749004, 0.549800796812749, 0.7549800796812749, 0.796812749003984, 0.8326693227091634, 0.8625498007968128, 0.9123505976095617, 0.900398406374502, 0.8446215139442231, 0.8147410358565738, 0.7928286852589641, 0.701195219123506, 0.12350597609561753, 0.08565737051792828, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.00199203187250996, 0.00398406374501992, 0.00398406374501992, 0.00398406374501992, 0.00199203187250996, 0.00199203187250996, 0.00398406374501992, 0.00398406374501992, 0.00796812749003984, 0.1553784860557769, 0.25298804780876494, 0.22709163346613545, 0.2729083665338645, 0.33266932270916333, 0.9342629482071713, 0.9462151394422311, 0.9262948207171314, 0.45219123505976094, 0.30278884462151395, 0.17928286852589642, 0.049800796812749, 0.025896414342629483, 0.027888446215139442, 0.02390438247011952, 0.0199203187250996, 0.9362549800796812, 0.025896414342629483, 0.027888446215139442, 0.025896414342629483, 0.025896414342629483, 0.025896414342629483, 0.029880478087649404, 0.08366533864541832, 0.05976095617529881, 0.053784860557768925, 0.049800796812749, 0.049800796812749, 0.0398406374501992, 0.037848605577689244, 0.0398406374501992, 0.0398406374501992, 0.043824701195219126, 0.043824701195219126, 0.045816733067729085, 0.04780876494023904, 0.049800796812749, 0.10358565737051793, 0.09760956175298804, 0.12350597609561753, 0.13346613545816732, 0.1752988047808765, 0.17131474103585656, 0.199203187250996, 0.24701195219123506, 0.2749003984063745, 0.2788844621513944, 0.26693227091633465, 0.2908366533864542, 0.4721115537848606, 0.3944223107569721, 0.30677290836653387, 0.4760956175298805, 0.6693227091633466, 0.7749003984063745, 0.798804780876494, 0.8605577689243028, 0.7888446215139442, 0.7330677290836654, 0.5637450199203188, 0.35856573705179284, 0.11155378486055777, 0.1892430278884462, 0.17330677290836655, 0.18127490039840638, 0.896414342629482, 0.16733067729083664, 0.17131474103585656, 0.18127490039840638, 0.18725099601593626, 0.2051792828685259, 0.22310756972111553, 0.250996015936255, 0.27689243027888444, 0.31673306772908366, 0.34860557768924305, 0.4402390438247012, 0.7390438247011952], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/ACCA.gap.json b/pfam_gap_rates/ACCA.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..dba59a604d98b2872e1709c6eec44d484219aecc
--- /dev/null
+++ b/pfam_gap_rates/ACCA.gap.json
@@ -0,0 +1 @@
+{"family": "ACCA", "n_seqs": 1332, "length": 145, "gap_rates": [0.6433933933933934, 0.31756756756756754, 0.2882882882882883, 0.27927927927927926, 0.2732732732732733, 0.2627627627627628, 0.2545045045045045, 0.2484984984984985, 0.24324324324324326, 0.23573573573573572, 0.22972972972972974, 0.22522522522522523, 0.22372372372372373, 0.2222222222222222, 0.22072072072072071, 0.21921921921921922, 0.21696696696696696, 0.21921921921921922, 0.22147147147147148, 0.21996996996996998, 0.21771771771771772, 0.23123123123123124, 0.22597597597597596, 0.24924924924924924, 0.8768768768768769, 0.240990990990991, 0.23573573573573572, 0.22747747747747749, 0.22672672672672672, 0.23423423423423423, 0.20795795795795796, 0.2012012012012012, 0.19894894894894896, 0.19894894894894896, 0.1981981981981982, 0.1966966966966967, 0.19519519519519518, 0.19444444444444445, 0.19144144144144143, 0.1891891891891892, 0.18768768768768768, 0.18543543543543545, 0.18393393393393392, 0.1816816816816817, 0.17942942942942944, 0.17117117117117117, 0.16966966966966968, 0.16366366366366367, 0.15840840840840842, 0.11636636636636637, 0.1021021021021021, 0.08333333333333333, 0.04354354354354354, 0.03078078078078078, 0.025525525525525526, 0.02027027027027027, 0.018018018018018018, 0.018018018018018018, 0.017267267267267267, 0.014264264264264264, 0.01126126126126126, 0.01126126126126126, 0.01126126126126126, 0.015015015015015015, 0.012012012012012012, 0.012012012012012012, 0.012762762762762763, 0.012762762762762763, 0.013513513513513514, 0.010510510510510511, 0.010510510510510511, 0.010510510510510511, 0.010510510510510511, 0.00975975975975976, 0.00975975975975976, 0.00975975975975976, 0.00975975975975976, 0.00975975975975976, 0.00975975975975976, 0.00975975975975976, 0.00975975975975976, 0.00975975975975976, 0.00975975975975976, 0.01126126126126126, 0.012762762762762763, 0.012762762762762763, 0.012762762762762763, 0.012762762762762763, 0.01126126126126126, 0.01126126126126126, 0.010510510510510511, 0.010510510510510511, 0.010510510510510511, 0.00975975975975976, 0.00975975975975976, 0.00975975975975976, 0.00975975975975976, 0.00975975975975976, 0.009009009009009009, 0.009009009009009009, 0.009009009009009009, 0.00975975975975976, 0.00975975975975976, 0.009009009009009009, 0.009009009009009009, 0.009009009009009009, 0.009009009009009009, 0.008258258258258258, 0.0075075075075075074, 0.009009009009009009, 0.008258258258258258, 0.008258258258258258, 0.009009009009009009, 0.009009009009009009, 0.010510510510510511, 0.033783783783783786, 0.03453453453453453, 0.03528528528528529, 0.015765765765765764, 0.015765765765765764, 0.015765765765765764, 0.015765765765765764, 0.015765765765765764, 0.014264264264264264, 0.014264264264264264, 0.014264264264264264, 0.014264264264264264, 0.013513513513513514, 0.013513513513513514, 0.013513513513513514, 0.013513513513513514, 0.013513513513513514, 0.014264264264264264, 0.014264264264264264, 0.014264264264264264, 0.014264264264264264, 0.014264264264264264, 0.014264264264264264, 0.014264264264264264, 0.014264264264264264, 0.015765765765765764, 0.015765765765765764, 0.015765765765765764, 0.01951951951951952, 0.11411411411411411], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/ACDC.gap.json b/pfam_gap_rates/ACDC.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..6e4ce3ce48505982a7cecdbb88099d7e30d62b6d
--- /dev/null
+++ b/pfam_gap_rates/ACDC.gap.json
@@ -0,0 +1 @@
+{"family": "ACDC", "n_seqs": 100, "length": 114, "gap_rates": [0.44, 0.28, 0.21, 0.15, 0.14, 0.14, 0.1, 0.1, 0.08, 0.08, 0.08, 0.07, 0.07, 0.07, 0.07, 0.07, 0.07, 0.07, 0.07, 0.05, 0.04, 0.05, 0.05, 0.06, 0.06, 0.06, 0.06, 0.06, 0.06, 0.06, 0.06, 0.06, 0.3, 0.42, 0.52, 0.63, 0.65, 0.73, 0.74, 0.74, 0.74, 0.79, 0.81, 0.82, 0.83, 0.88, 0.95, 0.9, 0.84, 0.82, 0.82, 0.8, 0.74, 0.74, 0.74, 0.73, 0.66, 0.63, 0.59, 0.05, 0.05, 0.05, 0.01, 0.01, 0.01, 0.01, 0.01, 0.01, 0.01, 0.01, 0.01, 0.01, 0.01, 0.01, 0.01, 0.01, 0.01, 0.01, 0.01, 0.01, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.01, 0.01, 0.01, 0.01, 0.01, 0.01, 0.01, 0.01, 0.01, 0.01, 0.01, 0.01, 0.03, 0.03, 0.04, 0.04, 0.04, 0.04, 0.04, 0.05, 0.06, 0.09, 0.13, 0.24, 0.34], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/ACT_6.gap.json b/pfam_gap_rates/ACT_6.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..9cb0a6800394234b3fd613021e1bfa70eff282a2
--- /dev/null
+++ b/pfam_gap_rates/ACT_6.gap.json
@@ -0,0 +1 @@
+{"family": "ACT_6", "n_seqs": 1274, "length": 82, "gap_rates": [0.8618524332810047, 0.6255886970172685, 0.4858712715855573, 0.12637362637362637, 0.05337519623233909, 0.03218210361067504, 0.016483516483516484, 0.013343799058084773, 0.012558869701726845, 0.005494505494505495, 0.004709576138147566, 0.004709576138147566, 0.004709576138147566, 0.0031397174254317113, 0.0031397174254317113, 0.0031397174254317113, 0.002354788069073783, 0.002354788069073783, 0.002354788069073783, 0.0007849293563579278, 0.0007849293563579278, 0.0007849293563579278, 0.0007849293563579278, 0.0007849293563579278, 0.0007849293563579278, 0.0007849293563579278, 0.0007849293563579278, 0.0015698587127158557, 0.0007849293563579278, 0.0007849293563579278, 0.0, 0.0015698587127158557, 0.0031397174254317113, 0.004709576138147566, 0.004709576138147566, 0.006279434850863423, 0.006279434850863423, 0.00706436420722135, 0.00706436420722135, 0.008634222919937205, 0.01098901098901099, 0.01098901098901099, 0.012558869701726845, 0.013343799058084773, 0.0141287284144427, 0.0141287284144427, 0.0141287284144427, 0.0141287284144427, 0.02040816326530612, 0.027472527472527472, 0.030612244897959183, 0.6640502354788069, 0.945054945054945, 0.9167974882260597, 0.5847723704866562, 0.04081632653061224, 0.04552590266875981, 0.9081632653061225, 0.7621664050235479, 0.04945054945054945, 0.05416012558869702, 0.05180533751962323, 0.07849293563579278, 0.05180533751962323, 0.05416012558869702, 0.06043956043956044, 0.06671899529042387, 0.0706436420722135, 0.07770800627943485, 0.08948194662480377, 0.11930926216640503, 0.17425431711145997, 0.1546310832025118, 0.16562009419152277, 0.17739403453689168, 0.18288854003139718, 0.1891679748822606, 0.206436420722135, 0.2370486656200942, 0.3139717425431711, 0.49921507064364207, 0.8445839874411303], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/AFG1_ATPase.gap.json b/pfam_gap_rates/AFG1_ATPase.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b265f89c69f4a27e149eaea8ebd1670d871c4adf
--- /dev/null
+++ b/pfam_gap_rates/AFG1_ATPase.gap.json
@@ -0,0 +1 @@
+{"family": "AFG1_ATPase", "n_seqs": 1403, "length": 412, "gap_rates": [0.9180327868852459, 0.8054169636493229, 0.6863863150392017, 0.6058446186742694, 0.5481111903064861, 0.5103349964362082, 0.48467569493941554, 0.481111903064861, 0.4775481111903065, 0.47113328581610836, 0.4689950106913756, 0.466143977191732, 0.4640057020669993, 0.4597291518175339, 0.45901639344262296, 0.4504632929436921, 0.44689950106913756, 0.4354953670705631, 0.4219529579472559, 0.4155381325730577, 0.4112615823235923, 0.4112615823235923, 0.4105488239486814, 0.4105488239486814, 0.4098360655737705, 0.4091233071988596, 0.40841054882394867, 0.40769779044903776, 0.4069850320741269, 0.406272273699216, 0.406272273699216, 0.40484675694939415, 0.40555951532430506, 0.40270848182466146, 0.925160370634355, 0.9372772630078403, 0.9215965787598004, 0.3998574483250178, 0.40769779044903776, 0.4091233071988596, 0.406272273699216, 0.40555951532430506, 0.40413399857448323, 0.4034212401995723, 0.5010691375623664, 0.46115466856735565, 0.4547398431931575, 0.5630791161796151, 0.7769066286528866, 0.8203848895224519, 0.8595866001425517, 0.8937990021382751, 0.932287954383464, 0.9465431218816821, 0.9415538132573058, 0.9123307198859587, 0.8816821097647898, 0.8296507483962936, 0.7954383464005702, 0.7419814682822523, 0.4632929436920884, 0.43193157519600855, 0.41767640769779046, 0.398431931575196, 0.3806129722024234, 0.3585174625801853, 0.3499643620812545, 0.3471133285816108, 0.40484675694939415, 0.36564504632929434, 0.45260156806842483, 0.924447612259444, 0.8823948681397007, 0.5666429080541696, 0.46044191019244474, 0.3827512473271561, 0.2915181753385602, 0.25302922309337134, 0.2344975053456878, 0.23093371347113328, 0.22665716322166785, 0.22665716322166785, 0.22665716322166785, 0.22594440484675696, 0.22594440484675696, 0.22523164647184604, 0.22451888809693513, 0.22309337134711332, 0.22380612972202424, 0.22380612972202424, 0.22451888809693513, 0.22380612972202424, 0.22380612972202424, 0.2166785459729152, 0.21739130434782608, 0.21596578759800428, 0.2166785459729152, 0.2166785459729152, 0.21881682109764788, 0.22024233784746972, 0.2195295794725588, 0.2195295794725588, 0.2195295794725588, 0.22166785459729152, 0.9308624376336422, 0.925160370634355, 0.21739130434782608, 0.33642195295794725, 0.9308624376336422, 0.2900926585887384, 0.29223093371347114, 0.2936564504632929, 0.28296507483962935, 0.2851033499643621, 0.27726300784034213, 0.27726300784034213, 0.2722736992159658, 0.2209550962223806, 0.218104062722737, 0.21739130434782608, 0.2195295794725588, 0.22523164647184604, 0.22736992159657876, 0.22523164647184604, 0.22166785459729152, 0.22166785459729152, 0.218104062722737, 0.2166785459729152, 0.21739130434782608, 0.2166785459729152, 0.2166785459729152, 0.5808980755523877, 0.6607270135424091, 0.7783321454027085, 0.796863863150392, 0.8538845331432644, 0.8695652173913043, 0.9080541696364932, 0.9215965787598004, 0.9394155381325731, 0.9458303635067712, 0.9486813970064149, 0.9465431218816821, 0.9422665716322167, 0.9337134711332858, 0.9166072701354241, 0.8987883107626514, 0.8631503920171062, 0.8403421240199572, 0.7868852459016393, 0.7412687099073414, 0.6457590876692801, 0.5787598004276551, 0.32287954383464007, 0.22523164647184604, 0.2209550962223806, 0.21739130434782608, 0.21382751247327156, 0.21454027084818247, 0.21311475409836064, 0.21311475409836064, 0.21168923734853884, 0.21168923734853884, 0.21097647897362795, 0.21097647897362795, 0.21026372059871704, 0.21311475409836064, 0.21382751247327156, 0.21739130434782608, 0.21525302922309336, 0.2915181753385602, 0.20812544547398432, 0.2074126870990734, 0.2074126870990734, 0.2074126870990734, 0.2074126870990734, 0.2074126870990734, 0.2066999287241625, 0.20384889522451888, 0.2052744119743407, 0.2059871703492516, 0.2059871703492516, 0.2066999287241625, 0.2066999287241625, 0.2066999287241625, 0.2059871703492516, 0.2059871703492516, 0.2059871703492516, 0.2059871703492516, 0.2059871703492516, 0.2052744119743407, 0.2059871703492516, 0.2059871703492516, 0.2059871703492516, 0.2066999287241625, 0.2074126870990734, 0.2074126870990734, 0.2074126870990734, 0.20812544547398432, 0.2074126870990734, 0.20883820384889523, 0.2059871703492516, 0.2066999287241625, 0.2066999287241625, 0.2066999287241625, 0.2059871703492516, 0.2059871703492516, 0.2074126870990734, 0.2059871703492516, 0.2059871703492516, 0.2066999287241625, 0.2052744119743407, 0.2059871703492516, 0.2059871703492516, 0.2059871703492516, 0.20955096222380612, 0.23877405559515325, 0.24019957234497505, 0.23877405559515325, 0.23948681397006416, 0.24091233071988596, 0.24091233071988596, 0.24305060584461868, 0.24305060584461868, 0.24376336421952957, 0.2444761225944405, 0.2466143977191732, 0.2466143977191732, 0.2459016393442623, 0.2444761225944405, 0.2444761225944405, 0.24376336421952957, 0.2444761225944405, 0.24376336421952957, 0.2444761225944405, 0.2444761225944405, 0.2444761225944405, 0.2444761225944405, 0.2451888809693514, 0.2459016393442623, 0.2444761225944405, 0.2444761225944405, 0.24305060584461868, 0.35138987883107625, 0.24376336421952957, 0.24305060584461868, 0.24233784746970777, 0.24376336421952957, 0.24875267284390593, 0.25089094796863864, 0.25659301496792586, 0.2594440484675695, 0.2615823235923022, 0.2672843905915894, 0.2722736992159658, 0.3449750534568781, 0.34640057020669995, 0.33927298645759085, 0.3328581610833927, 0.33713471133285816, 0.3421240199572345, 0.33998574483250177, 0.3449750534568781, 0.34853884533143265, 0.35424091233071986, 0.35210263720598717, 0.3449750534568781, 0.3428367783321454, 0.34568781183178904, 0.34568781183178904, 0.34568781183178904, 0.34640057020669995, 0.34640057020669995, 0.3499643620812545, 0.34782608695652173, 0.34568781183178904, 0.3414112615823236, 0.34782608695652173, 0.8146828225231646, 0.9465431218816821, 0.9294369208838203, 0.7662152530292231, 0.3421240199572345, 0.3300071275837491, 0.3378474697077691, 0.33357091945830364, 0.32786885245901637, 0.31860299358517463, 0.315751960085531, 0.30648610121168923, 0.29793300071275836, 0.29508196721311475, 0.2915181753385602, 0.2886671418389166, 0.28367783321454026, 0.28082679971489666, 0.27726300784034213, 0.2722736992159658, 0.26657163221667857, 0.29579472558802566, 0.2736992159657876, 0.25445473984319317, 0.25160370634354956, 0.2466143977191732, 0.24233784746970777, 0.24091233071988596, 0.23378474697077692, 0.22950819672131148, 0.22808267997148968, 0.22594440484675696, 0.22380612972202424, 0.22451888809693513, 0.22380612972202424, 0.22238061297220243, 0.22166785459729152, 0.21881682109764788, 0.22736992159657876, 0.22736992159657876, 0.21525302922309336, 0.21311475409836064, 0.21240199572344975, 0.21240199572344975, 0.21168923734853884, 0.21026372059871704, 0.21026372059871704, 0.21026372059871704, 0.21026372059871704, 0.21026372059871704, 0.20955096222380612, 0.20812544547398432, 0.20812544547398432, 0.20812544547398432, 0.20812544547398432, 0.20812544547398432, 0.2074126870990734, 0.2074126870990734, 0.2074126870990734, 0.2066999287241625, 0.2066999287241625, 0.2059871703492516, 0.2045616535994298, 0.20242337847469707, 0.20242337847469707, 0.20028510334996436, 0.3171774768353528, 0.3036350677120456, 0.2074126870990734, 0.20242337847469707, 0.2045616535994298, 0.2052744119743407, 0.2059871703492516, 0.2059871703492516, 0.2059871703492516, 0.2052744119743407, 0.2052744119743407, 0.2045616535994298, 0.2045616535994298, 0.2045616535994298, 0.2045616535994298, 0.2052744119743407, 0.2066999287241625, 0.2074126870990734, 0.20812544547398432, 0.20812544547398432, 0.21026372059871704, 0.21240199572344975, 0.21382751247327156, 0.21454027084818247, 0.21739130434782608, 0.2166785459729152, 0.2166785459729152, 0.9037776193870278, 0.9037776193870278, 0.9009265858873842, 0.21881682109764788, 0.218104062722737, 0.218104062722737, 0.21881682109764788, 0.2195295794725588, 0.22238061297220243, 0.22451888809693513, 0.22736992159657876, 0.24305060584461868, 0.2758374910905203, 0.3050605844618674, 0.33998574483250177, 0.37633642195295797, 0.4390591589451176, 0.9337134711332858, 0.9301496792587313, 0.46115466856735565, 0.47255880256593014, 0.4796863863150392, 0.48467569493941554, 0.4868139700641482, 0.49607982893799, 0.5003563791874555, 0.5032074126870991, 0.5067712045616536, 0.5081967213114754, 0.5153243050605845, 0.5160370634354954, 0.5167498218104063, 0.5196008553100498, 0.5352815395580898, 0.5773342836778332, 0.6222380612972203, 0.6357804704205274, 0.6450463292943692, 0.6749821810406272, 0.7205987170349252, 0.8866714183891661], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/AIPR.gap.json b/pfam_gap_rates/AIPR.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e8cd29baf8c1d0c336b16026de8dad8487c51118
--- /dev/null
+++ b/pfam_gap_rates/AIPR.gap.json
@@ -0,0 +1 @@
+{"family": "AIPR", "n_seqs": 257, "length": 418, "gap_rates": [0.20622568093385213, 0.10505836575875487, 0.05058365758754864, 0.04669260700389105, 0.04669260700389105, 0.04669260700389105, 0.04669260700389105, 0.04669260700389105, 0.04669260700389105, 0.05058365758754864, 0.05058365758754864, 0.04669260700389105, 0.04669260700389105, 0.45525291828793774, 0.8638132295719845, 0.04669260700389105, 0.042801556420233464, 0.042801556420233464, 0.042801556420233464, 0.042801556420233464, 0.042801556420233464, 0.038910505836575876, 0.038910505836575876, 0.03501945525291829, 0.03501945525291829, 0.03501945525291829, 0.0311284046692607, 0.027237354085603113, 0.027237354085603113, 0.027237354085603113, 0.8249027237354085, 0.6303501945525292, 0.027237354085603113, 0.027237354085603113, 0.027237354085603113, 0.027237354085603113, 0.027237354085603113, 0.027237354085603113, 0.027237354085603113, 0.027237354085603113, 0.027237354085603113, 0.027237354085603113, 0.027237354085603113, 0.027237354085603113, 0.027237354085603113, 0.027237354085603113, 0.027237354085603113, 0.027237354085603113, 0.027237354085603113, 0.038910505836575876, 0.8287937743190662, 0.41245136186770426, 0.3735408560311284, 0.25680933852140075, 0.22568093385214008, 0.4474708171206226, 0.7782101167315175, 0.33073929961089493, 0.22957198443579765, 0.17120622568093385, 0.12840466926070038, 0.04669260700389105, 0.0311284046692607, 0.0311284046692607, 0.027237354085603113, 0.027237354085603113, 0.027237354085603113, 0.027237354085603113, 0.8988326848249028, 0.9105058365758755, 0.8949416342412452, 0.027237354085603113, 0.027237354085603113, 0.027237354085603113, 0.027237354085603113, 0.027237354085603113, 0.0311284046692607, 0.0311284046692607, 0.0311284046692607, 0.03501945525291829, 0.03501945525291829, 0.0311284046692607, 0.0311284046692607, 0.03501945525291829, 0.03501945525291829, 0.0311284046692607, 0.0311284046692607, 0.05058365758754864, 0.06614785992217899, 0.8054474708171206, 0.914396887159533, 0.5136186770428015, 0.0933852140077821, 0.20233463035019456, 0.17898832684824903, 0.8443579766536965, 0.8988326848249028, 0.9299610894941635, 0.867704280155642, 0.8326848249027238, 0.042801556420233464, 0.027237354085603113, 0.027237354085603113, 0.027237354085603113, 0.027237354085603113, 0.027237354085603113, 0.027237354085603113, 0.027237354085603113, 0.027237354085603113, 0.027237354085603113, 0.027237354085603113, 0.027237354085603113, 0.7509727626459144, 0.8715953307392996, 0.933852140077821, 0.8560311284046692, 0.6186770428015564, 0.45525291828793774, 0.40077821011673154, 0.06614785992217899, 0.06614785992217899, 0.05058365758754864, 0.0311284046692607, 0.027237354085603113, 0.027237354085603113, 0.027237354085603113, 0.027237354085603113, 0.027237354085603113, 0.027237354085603113, 0.027237354085603113, 0.027237354085603113, 0.027237354085603113, 0.027237354085603113, 0.027237354085603113, 0.027237354085603113, 0.027237354085603113, 0.027237354085603113, 0.027237354085603113, 0.023346303501945526, 0.038910505836575876, 0.023346303501945526, 0.023346303501945526, 0.023346303501945526, 0.023346303501945526, 0.023346303501945526, 0.023346303501945526, 0.023346303501945526, 0.023346303501945526, 0.023346303501945526, 0.023346303501945526, 0.023346303501945526, 0.023346303501945526, 0.023346303501945526, 0.023346303501945526, 0.023346303501945526, 0.023346303501945526, 0.023346303501945526, 0.023346303501945526, 0.5291828793774319, 0.6614785992217899, 0.7509727626459144, 0.7626459143968871, 0.7898832684824902, 0.7626459143968871, 0.7587548638132295, 0.688715953307393, 0.6342412451361867, 0.49416342412451364, 0.4396887159533074, 0.38132295719844356, 0.08560311284046693, 0.07392996108949416, 0.04669260700389105, 0.04669260700389105, 0.04669260700389105, 0.04669260700389105, 0.054474708171206226, 0.05058365758754864, 0.9260700389105059, 0.038910505836575876, 0.03501945525291829, 0.0311284046692607, 0.03501945525291829, 0.038910505836575876, 0.03501945525291829, 0.038910505836575876, 0.038910505836575876, 0.058365758754863814, 0.6731517509727627, 0.6770428015564203, 0.6770428015564203, 0.6848249027237354, 0.8171206225680934, 0.8988326848249028, 0.6964980544747081, 0.6770428015564203, 0.6770428015564203, 0.6731517509727627, 0.6653696498054474, 0.6186770428015564, 0.6147859922178989, 0.377431906614786, 0.669260700389105, 0.6848249027237354, 0.5603112840466926, 0.31906614785992216, 0.26459143968871596, 0.19455252918287938, 0.06614785992217899, 0.04669260700389105, 0.038910505836575876, 0.03501945525291829, 0.03501945525291829, 0.03501945525291829, 0.03501945525291829, 0.03501945525291829, 0.03501945525291829, 0.03501945525291829, 0.03501945525291829, 0.03501945525291829, 0.042801556420233464, 0.5136186770428015, 0.04669260700389105, 0.058365758754863814, 0.05058365758754864, 0.058365758754863814, 0.08171206225680934, 0.8443579766536965, 0.8638132295719845, 0.8871595330739299, 0.9105058365758755, 0.9494163424124513, 0.8949416342412452, 0.8754863813229572, 0.8638132295719845, 0.8365758754863813, 0.06614785992217899, 0.0622568093385214, 0.06614785992217899, 0.0622568093385214, 0.0622568093385214, 0.058365758754863814, 0.058365758754863814, 0.058365758754863814, 0.058365758754863814, 0.058365758754863814, 0.7937743190661478, 0.8365758754863813, 0.8910505836575876, 0.8910505836575876, 0.8910505836575876, 0.8560311284046692, 0.8171206225680934, 0.7509727626459144, 0.33073929961089493, 0.3151750972762646, 0.3151750972762646, 0.35019455252918286, 0.3657587548638132, 0.4046692607003891, 0.41245136186770426, 0.48638132295719844, 0.490272373540856, 0.4357976653696498, 0.36186770428015563, 0.31906614785992216, 0.16342412451361868, 0.14007782101167315, 0.12840466926070038, 0.12062256809338522, 0.10116731517509728, 0.10116731517509728, 0.10894941634241245, 0.9416342412451362, 0.8988326848249028, 0.42412451361867703, 0.377431906614786, 0.3463035019455253, 0.3346303501945525, 0.30739299610894943, 0.8910505836575876, 0.9455252918287937, 0.9221789883268483, 0.867704280155642, 0.08171206225680934, 0.07003891050583658, 0.07003891050583658, 0.07003891050583658, 0.07003891050583658, 0.07003891050583658, 0.07003891050583658, 0.07392996108949416, 0.07392996108949416, 0.08171206225680934, 0.08171206225680934, 0.08560311284046693, 0.08949416342412451, 0.0933852140077821, 0.0933852140077821, 0.10116731517509728, 0.10116731517509728, 0.10116731517509728, 0.10116731517509728, 0.10116731517509728, 0.10894941634241245, 0.6498054474708171, 0.9027237354085603, 0.8521400778210116, 0.5992217898832685, 0.15953307392996108, 0.3229571984435798, 0.2723735408560311, 0.23735408560311283, 0.2140077821011673, 0.2490272373540856, 0.7120622568093385, 0.7276264591439688, 0.7626459143968871, 0.7704280155642024, 0.8054474708171206, 0.8171206225680934, 0.8171206225680934, 0.8326848249027238, 0.8326848249027238, 0.8404669260700389, 0.8521400778210116, 0.8599221789883269, 0.8715953307392996, 0.8754863813229572, 0.8793774319066148, 0.8832684824902723, 0.8871595330739299, 0.9299610894941635, 0.9299610894941635, 0.8988326848249028, 0.8832684824902723, 0.8832684824902723, 0.8754863813229572, 0.8754863813229572, 0.8599221789883269, 0.8560311284046692, 0.8443579766536965, 0.8365758754863813, 0.8326848249027238, 0.8210116731517509, 0.8171206225680934, 0.8093385214007782, 0.7976653696498055, 0.7704280155642024, 0.7431906614785992, 0.7198443579766537, 0.7120622568093385, 0.14785992217898833, 0.16731517509727625, 0.16731517509727625, 0.16342412451361868, 0.15953307392996108, 0.15953307392996108, 0.15953307392996108, 0.16342412451361868, 0.17509727626459143, 0.17898832684824903, 0.17898832684824903, 0.1828793774319066, 0.1828793774319066, 0.19066147859922178, 0.19066147859922178, 0.19455252918287938, 0.2178988326848249, 0.23346303501945526, 0.5447470817120622, 0.6731517509727627, 0.7898832684824902, 0.8638132295719845, 0.8949416342412452, 0.9221789883268483, 0.9416342412451362, 0.9105058365758755, 0.8715953307392996, 0.8015564202334631, 0.7120622568093385, 0.5797665369649806, 0.5214007782101168, 0.311284046692607, 0.4280155642023346, 0.4085603112840467, 0.40077821011673154, 0.377431906614786, 0.3735408560311284, 0.3657587548638132, 0.3540856031128405, 0.36964980544747084, 0.377431906614786, 0.3852140077821012, 0.38910505836575876, 0.5097276264591439, 0.9377431906614786, 0.4163424124513619, 0.42023346303501946, 0.4085603112840467, 0.4085603112840467, 0.3968871595330739, 0.4046692607003891, 0.42023346303501946, 0.43190661478599224, 0.45525291828793774, 0.46303501945525294, 0.48249027237354086, 0.4980544747081712, 0.5291828793774319, 0.5525291828793775, 0.5642023346303502, 0.6070038910505836, 0.622568093385214, 0.6575875486381323, 0.7003891050583657, 0.7587548638132295, 0.8443579766536965], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/ANAPC10.gap.json b/pfam_gap_rates/ANAPC10.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..dbf4f912d8effeaa7c4832fad66b5bd2441ac3f8
--- /dev/null
+++ b/pfam_gap_rates/ANAPC10.gap.json
@@ -0,0 +1 @@
+{"family": "ANAPC10", "n_seqs": 511, "length": 216, "gap_rates": [0.949119373776908, 0.9452054794520548, 0.9354207436399217, 0.9119373776908023, 0.8786692759295499, 0.8688845401174168, 0.8473581213307241, 0.8317025440313112, 0.8140900195694716, 0.7984344422700587, 0.786692759295499, 0.7651663405088063, 0.7436399217221135, 0.7495107632093934, 0.7455968688845401, 0.7084148727984344, 0.9060665362035225, 0.9197651663405088, 0.9373776908023483, 0.9099804305283757, 0.8962818003913894, 0.6614481409001957, 0.5675146771037182, 0.5362035225048923, 0.3913894324853229, 0.3816046966731898, 0.3796477495107632, 0.37181996086105673, 0.3659491193737769, 0.36203522504892366, 0.35812133072407043, 0.3150684931506849, 0.30724070450097846, 0.29354207436399216, 0.2876712328767123, 0.2857142857142857, 0.29354207436399216, 0.29549902152641877, 0.27984344422700586, 0.2857142857142857, 0.2720156555772994, 0.2328767123287671, 0.21135029354207435, 0.162426614481409, 0.1487279843444227, 0.14285714285714285, 0.14285714285714285, 0.14285714285714285, 0.11154598825831702, 0.10176125244618395, 0.09980430528375733, 0.08610567514677103, 0.08023483365949119, 0.07632093933463796, 0.07632093933463796, 0.07436399217221135, 0.07632093933463796, 0.9471624266144814, 0.07827788649706457, 0.07240704500978473, 0.07045009784735812, 0.07240704500978473, 0.9080234833659491, 0.08023483365949119, 0.9178082191780822, 0.07827788649706457, 0.07632093933463796, 0.07240704500978473, 0.07240704500978473, 0.07436399217221135, 0.07632093933463796, 0.07632093933463796, 0.07632093933463796, 0.0821917808219178, 0.08023483365949119, 0.07827788649706457, 0.07045009784735812, 0.0684931506849315, 0.06653620352250489, 0.05870841487279843, 0.05283757338551859, 0.05283757338551859, 0.05283757338551859, 0.05283757338551859, 0.05675146771037182, 0.07240704500978473, 0.12915851272015655, 0.18590998043052837, 0.05870841487279843, 0.05675146771037182, 0.0547945205479452, 0.0547945205479452, 0.05283757338551859, 0.050880626223091974, 0.0547945205479452, 0.050880626223091974, 0.050880626223091974, 0.05283757338551859, 0.0547945205479452, 0.0547945205479452, 0.0547945205479452, 0.05870841487279843, 0.06457925636007827, 0.0684931506849315, 0.07240704500978473, 0.0958904109589041, 0.06262230919765166, 0.06457925636007827, 0.06653620352250489, 0.06457925636007827, 0.06457925636007827, 0.0684931506849315, 0.08023483365949119, 0.08023483365949119, 0.0821917808219178, 0.09197651663405088, 0.08610567514677103, 0.8610567514677103, 0.08414872798434442, 0.10371819960861056, 0.09393346379647749, 0.09980430528375733, 0.1095890410958904, 0.13111545988258316, 0.12524461839530332, 0.12915851272015655, 0.11937377690802348, 0.16829745596868884, 0.13111545988258316, 0.1487279843444227, 0.6712328767123288, 0.7397260273972602, 0.8414872798434442, 0.8786692759295499, 0.8943248532289628, 0.9001956947162426, 0.9060665362035225, 0.9099804305283757, 0.9197651663405088, 0.9295499021526419, 0.9393346379647749, 0.9452054794520548, 0.9471624266144814, 0.9452054794520548, 0.9412915851272016, 0.9373776908023483, 0.923679060665362, 0.9178082191780822, 0.9060665362035225, 0.9021526418786693, 0.898238747553816, 0.8864970645792564, 0.8551859099804305, 0.8160469667318982, 0.7377690802348337, 0.6594911937377691, 0.15655577299412915, 0.8767123287671232, 0.37573385518590996, 0.2974559686888454, 0.24266144814090018, 0.19765166340508805, 0.20743639921722112, 0.20939334637964774, 0.18395303326810175, 0.17221135029354206, 0.18199608610567514, 0.18786692759295498, 0.18590998043052837, 0.18199608610567514, 0.18199608610567514, 0.18786692759295498, 0.18786692759295498, 0.18786692759295498, 0.18786692759295498, 0.18786692759295498, 0.18786692759295498, 0.19373776908023482, 0.1917808219178082, 0.1917808219178082, 0.19373776908023482, 0.19373776908023482, 0.19373776908023482, 0.19569471624266144, 0.19373776908023482, 0.19373776908023482, 0.20156555772994128, 0.2054794520547945, 0.20939334637964774, 0.20939334637964774, 0.2172211350293542, 0.24266144814090018, 0.2896281800391389, 0.3835616438356164, 0.45596868884540115, 0.44031311154598823, 0.47162426614481406, 0.5166340508806262, 0.5616438356164384, 0.6692759295499021, 0.6731898238747553, 0.6731898238747553, 0.6692759295499021, 0.6810176125244618, 0.6986301369863014, 0.7142857142857143, 0.7221135029354208, 0.735812133072407, 0.7416829745596869, 0.7495107632093934, 0.7592954990215264, 0.7690802348336595, 0.786692759295499, 0.812133072407045, 0.8414872798434442, 0.9021526418786693], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/ANAPC3.gap.json b/pfam_gap_rates/ANAPC3.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f97ea45c312152ce5ad8b4cc3627b2a25ccceefc
--- /dev/null
+++ b/pfam_gap_rates/ANAPC3.gap.json
@@ -0,0 +1 @@
+{"family": "ANAPC3", "n_seqs": 1248, "length": 85, "gap_rates": [0.8205128205128205, 0.5745192307692307, 0.390224358974359, 0.3060897435897436, 0.2692307692307692, 0.21314102564102563, 0.20432692307692307, 0.19631410256410256, 0.18830128205128205, 0.1842948717948718, 0.17708333333333334, 0.1658653846153846, 0.1594551282051282, 0.1578525641025641, 0.15544871794871795, 0.1482371794871795, 0.4855769230769231, 0.16826923076923078, 0.12259615384615384, 0.0889423076923077, 0.08092948717948718, 0.06971153846153846, 0.06330128205128205, 0.055288461538461536, 0.05048076923076923, 0.040865384615384616, 0.032852564102564104, 0.026442307692307692, 0.01842948717948718, 0.9447115384615384, 0.9190705128205128, 0.00641025641025641, 0.00641025641025641, 0.005608974358974359, 0.005608974358974359, 0.005608974358974359, 0.005608974358974359, 0.004807692307692308, 0.003205128205128205, 0.003205128205128205, 0.003205128205128205, 0.002403846153846154, 0.002403846153846154, 0.003205128205128205, 0.003205128205128205, 0.003205128205128205, 0.004006410256410256, 0.004006410256410256, 0.004006410256410256, 0.004006410256410256, 0.00641025641025641, 0.4495192307692308, 0.21394230769230768, 0.17868589743589744, 0.11458333333333333, 0.09455128205128205, 0.03766025641025641, 0.03926282051282051, 0.03766025641025641, 0.9375, 0.03926282051282051, 0.03926282051282051, 0.038461538461538464, 0.03926282051282051, 0.04006410256410257, 0.04006410256410257, 0.04006410256410257, 0.04006410256410257, 0.040865384615384616, 0.041666666666666664, 0.04326923076923077, 0.04487179487179487, 0.04487179487179487, 0.04567307692307692, 0.046474358974358976, 0.052884615384615384, 0.055288461538461536, 0.05929487179487179, 0.0641025641025641, 0.07371794871794872, 0.09615384615384616, 0.1233974358974359, 0.15544871794871795, 0.24358974358974358, 0.46634615384615385], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/APG17.gap.json b/pfam_gap_rates/APG17.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..bfd402876d54af6fd40f53f93877428d8d27e3fa
--- /dev/null
+++ b/pfam_gap_rates/APG17.gap.json
@@ -0,0 +1 @@
+{"family": "APG17", "n_seqs": 207, "length": 522, "gap_rates": [0.6956521739130435, 0.5072463768115942, 0.4830917874396135, 0.47342995169082125, 0.463768115942029, 0.45410628019323673, 0.45410628019323673, 0.45410628019323673, 0.45410628019323673, 0.45410628019323673, 0.45410628019323673, 0.7536231884057971, 0.4492753623188406, 0.4444444444444444, 0.4396135265700483, 0.41545893719806765, 0.41545893719806765, 0.40096618357487923, 0.40096618357487923, 0.40096618357487923, 0.3961352657004831, 0.3961352657004831, 0.391304347826087, 0.391304347826087, 0.391304347826087, 0.38164251207729466, 0.37681159420289856, 0.37681159420289856, 0.37681159420289856, 0.3671497584541063, 0.36231884057971014, 0.357487922705314, 0.357487922705314, 0.3526570048309179, 0.3526570048309179, 0.3526570048309179, 0.3526570048309179, 0.3526570048309179, 0.3526570048309179, 0.3526570048309179, 0.3526570048309179, 0.3526570048309179, 0.34782608695652173, 0.34782608695652173, 0.34782608695652173, 0.34299516908212563, 0.33816425120772947, 0.33816425120772947, 0.33816425120772947, 0.33816425120772947, 0.33816425120772947, 0.3333333333333333, 0.3333333333333333, 0.3285024154589372, 0.3333333333333333, 0.3333333333333333, 0.3333333333333333, 0.3333333333333333, 0.3333333333333333, 0.3333333333333333, 0.3333333333333333, 0.34299516908212563, 0.3526570048309179, 0.357487922705314, 0.3526570048309179, 0.3526570048309179, 0.927536231884058, 0.33816425120772947, 0.34299516908212563, 0.34299516908212563, 0.34299516908212563, 0.3333333333333333, 0.3285024154589372, 0.3285024154589372, 0.32367149758454106, 0.3285024154589372, 0.3285024154589372, 0.32367149758454106, 0.32367149758454106, 0.32367149758454106, 0.32367149758454106, 0.32367149758454106, 0.32367149758454106, 0.32367149758454106, 0.32367149758454106, 0.32367149758454106, 0.32367149758454106, 0.32367149758454106, 0.32367149758454106, 0.32367149758454106, 0.32367149758454106, 0.32367149758454106, 0.32367149758454106, 0.32367149758454106, 0.32367149758454106, 0.32367149758454106, 0.32367149758454106, 0.32367149758454106, 0.32367149758454106, 0.3188405797101449, 0.3188405797101449, 0.3188405797101449, 0.3188405797101449, 0.3333333333333333, 0.3333333333333333, 0.3333333333333333, 0.33816425120772947, 0.3333333333333333, 0.4492753623188406, 0.34299516908212563, 0.6908212560386473, 0.7391304347826086, 0.7584541062801933, 0.7681159420289855, 0.7922705314009661, 0.821256038647343, 0.8454106280193237, 0.855072463768116, 0.8599033816425121, 0.8647342995169082, 0.8647342995169082, 0.8647342995169082, 0.8647342995169082, 0.8647342995169082, 0.8743961352657005, 0.8792270531400966, 0.8792270531400966, 0.8792270531400966, 0.8792270531400966, 0.893719806763285, 0.8985507246376812, 0.8985507246376812, 0.9033816425120773, 0.9130434782608695, 0.9323671497584541, 0.9371980676328503, 0.927536231884058, 0.9082125603864735, 0.8985507246376812, 0.8985507246376812, 0.8985507246376812, 0.8840579710144928, 0.8792270531400966, 0.8792270531400966, 0.8792270531400966, 0.8792270531400966, 0.8647342995169082, 0.8647342995169082, 0.8647342995169082, 0.8647342995169082, 0.8647342995169082, 0.8647342995169082, 0.8599033816425121, 0.855072463768116, 0.8405797101449275, 0.8019323671497585, 0.782608695652174, 0.7632850241545893, 0.748792270531401, 0.7246376811594203, 0.463768115942029, 0.3333333333333333, 0.32367149758454106, 0.32367149758454106, 0.32367149758454106, 0.32367149758454106, 0.32367149758454106, 0.32367149758454106, 0.32367149758454106, 0.3188405797101449, 0.3188405797101449, 0.32367149758454106, 0.32367149758454106, 0.32367149758454106, 0.32367149758454106, 0.3333333333333333, 0.3333333333333333, 0.3333333333333333, 0.3333333333333333, 0.3333333333333333, 0.3333333333333333, 0.3333333333333333, 0.32367149758454106, 0.8888888888888888, 0.9033816425120773, 0.9082125603864735, 0.9323671497584541, 0.9468599033816425, 0.9371980676328503, 0.9130434782608695, 0.9082125603864735, 0.893719806763285, 0.8888888888888888, 0.32367149758454106, 0.3285024154589372, 0.32367149758454106, 0.3285024154589372, 0.3285024154589372, 0.32367149758454106, 0.32367149758454106, 0.3188405797101449, 0.32367149758454106, 0.32367149758454106, 0.32367149758454106, 0.32367149758454106, 0.32367149758454106, 0.32367149758454106, 0.3285024154589372, 0.3285024154589372, 0.34782608695652173, 0.3526570048309179, 0.3333333333333333, 0.34299516908212563, 0.33816425120772947, 0.33816425120772947, 0.33816425120772947, 0.33816425120772947, 0.34299516908212563, 0.34782608695652173, 0.34782608695652173, 0.34782608695652173, 0.33816425120772947, 0.5458937198067633, 0.6231884057971014, 0.7584541062801933, 0.821256038647343, 0.8309178743961353, 0.8647342995169082, 0.8840579710144928, 0.893719806763285, 0.9082125603864735, 0.9178743961352657, 0.927536231884058, 0.9130434782608695, 0.8985507246376812, 0.893719806763285, 0.8743961352657005, 0.855072463768116, 0.8309178743961353, 0.7971014492753623, 0.6859903381642513, 0.5652173913043478, 0.5217391304347826, 0.357487922705314, 0.6618357487922706, 0.6135265700483091, 0.5265700483091788, 0.5072463768115942, 0.4444444444444444, 0.37681159420289856, 0.9082125603864735, 0.821256038647343, 0.357487922705314, 0.357487922705314, 0.34782608695652173, 0.34299516908212563, 0.34782608695652173, 0.34782608695652173, 0.34782608695652173, 0.34782608695652173, 0.3526570048309179, 0.3526570048309179, 0.357487922705314, 0.3526570048309179, 0.3526570048309179, 0.3526570048309179, 0.36231884057971014, 0.3671497584541063, 0.3671497584541063, 0.3671497584541063, 0.3719806763285024, 0.37681159420289856, 0.38164251207729466, 0.38164251207729466, 0.38164251207729466, 0.3864734299516908, 0.3864734299516908, 0.3864734299516908, 0.3864734299516908, 0.3864734299516908, 0.3961352657004831, 0.40096618357487923, 0.40096618357487923, 0.3961352657004831, 0.3961352657004831, 0.391304347826087, 0.391304347826087, 0.391304347826087, 0.391304347826087, 0.4106280193236715, 0.41545893719806765, 0.42995169082125606, 0.43478260869565216, 0.4251207729468599, 0.42028985507246375, 0.42995169082125606, 0.45410628019323673, 0.4927536231884058, 0.6811594202898551, 0.7391304347826086, 0.6570048309178744, 0.6280193236714976, 0.6666666666666666, 0.7053140096618358, 0.6859903381642513, 0.5797101449275363, 0.6811594202898551, 0.6859903381642513, 0.6908212560386473, 0.6908212560386473, 0.7004830917874396, 0.7004830917874396, 0.7004830917874396, 0.7004830917874396, 0.7101449275362319, 0.7246376811594203, 0.7391304347826086, 0.7584541062801933, 0.782608695652174, 0.8405797101449275, 0.9227053140096618, 0.9371980676328503, 0.893719806763285, 0.821256038647343, 0.7729468599033816, 0.7439613526570048, 0.7294685990338164, 0.7198067632850241, 0.7101449275362319, 0.7004830917874396, 0.7004830917874396, 0.7004830917874396, 0.6908212560386473, 0.6908212560386473, 0.6908212560386473, 0.6859903381642513, 0.6763285024154589, 0.4975845410628019, 0.4830917874396135, 0.463768115942029, 0.45410628019323673, 0.4444444444444444, 0.5507246376811594, 0.5362318840579711, 0.5314009661835749, 0.5314009661835749, 0.3719806763285024, 0.3671497584541063, 0.3671497584541063, 0.3719806763285024, 0.3719806763285024, 0.3671497584541063, 0.357487922705314, 0.357487922705314, 0.357487922705314, 0.34782608695652173, 0.34299516908212563, 0.33816425120772947, 0.33816425120772947, 0.3333333333333333, 0.32367149758454106, 0.3285024154589372, 0.32367149758454106, 0.3188405797101449, 0.3140096618357488, 0.30917874396135264, 0.30434782608695654, 0.2995169082125604, 0.2995169082125604, 0.2995169082125604, 0.2898550724637681, 0.8985507246376812, 0.9082125603864735, 0.9033816425120773, 0.8840579710144928, 0.27053140096618356, 0.27053140096618356, 0.27053140096618356, 0.26570048309178745, 0.2608695652173913, 0.25120772946859904, 0.23671497584541062, 0.23671497584541062, 0.2318840579710145, 0.22705314009661837, 0.2318840579710145, 0.22705314009661837, 0.22705314009661837, 0.2222222222222222, 0.21739130434782608, 0.19806763285024154, 0.1932367149758454, 0.1932367149758454, 0.1932367149758454, 0.18840579710144928, 0.18357487922705315, 0.18357487922705315, 0.18357487922705315, 0.18357487922705315, 0.18357487922705315, 0.18357487922705315, 0.18357487922705315, 0.18357487922705315, 0.18357487922705315, 0.2753623188405797, 0.2560386473429952, 0.7971014492753623, 0.2560386473429952, 0.21256038647342995, 0.16908212560386474, 0.1642512077294686, 0.16908212560386474, 0.16908212560386474, 0.1642512077294686, 0.1642512077294686, 0.1642512077294686, 0.7536231884057971, 0.7198067632850241, 0.6859903381642513, 0.17391304347826086, 0.16908212560386474, 0.16908212560386474, 0.1642512077294686, 0.16908212560386474, 0.16908212560386474, 0.16908212560386474, 0.1642512077294686, 0.9371980676328503, 0.9420289855072463, 0.9371980676328503, 0.9323671497584541, 0.2753623188405797, 0.2608695652173913, 0.2560386473429952, 0.17391304347826086, 0.17391304347826086, 0.16908212560386474, 0.16908212560386474, 0.1642512077294686, 0.1642512077294686, 0.1642512077294686, 0.15942028985507245, 0.15942028985507245, 0.15942028985507245, 0.1642512077294686, 0.1642512077294686, 0.16908212560386474, 0.16908212560386474, 0.16908212560386474, 0.18357487922705315, 0.23671497584541062, 0.21256038647342995, 0.22705314009661837, 0.18840579710144928, 0.1932367149758454, 0.1932367149758454, 0.16908212560386474, 0.14492753623188406, 0.13043478260869565, 0.13043478260869565, 0.13043478260869565, 0.13043478260869565, 0.13043478260869565, 0.13043478260869565, 0.13043478260869565, 0.13043478260869565, 0.13043478260869565, 0.14009661835748793, 0.14009661835748793, 0.13526570048309178, 0.13526570048309178, 0.13526570048309178, 0.14009661835748793, 0.14492753623188406, 0.14009661835748793, 0.14009661835748793, 0.18357487922705315, 0.178743961352657, 0.14492753623188406, 0.14492753623188406, 0.13526570048309178, 0.14009661835748793, 0.13526570048309178, 0.13526570048309178, 0.14009661835748793, 0.14009661835748793, 0.14009661835748793, 0.14009661835748793, 0.14009661835748793, 0.14009661835748793, 0.14009661835748793, 0.14009661835748793, 0.1497584541062802, 0.16908212560386474, 0.16908212560386474, 0.16908212560386474, 0.16908212560386474, 0.16908212560386474, 0.16908212560386474, 0.16908212560386474, 0.16908212560386474, 0.16908212560386474, 0.17391304347826086, 0.17391304347826086, 0.17391304347826086, 0.17391304347826086, 0.17391304347826086, 0.178743961352657, 0.178743961352657, 0.18357487922705315, 0.20772946859903382, 0.21256038647342995, 0.21739130434782608, 0.22705314009661837, 0.23671497584541062, 0.25120772946859904, 0.30434782608695654, 0.3188405797101449, 0.4444444444444444, 0.5120772946859904, 0.6038647342995169, 0.7391304347826086], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/APH.gap.json b/pfam_gap_rates/APH.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d52ceb82b94f374ef451c5fe5bc5776a39341c19
--- /dev/null
+++ b/pfam_gap_rates/APH.gap.json
@@ -0,0 +1 @@
+{"family": "APH", "n_seqs": 5000, "length": 339, "gap_rates": [0.8052, 0.7108, 0.6568, 0.6214, 0.5896, 0.5556, 0.5688, 0.5194, 0.5054, 0.49, 0.4866, 0.4654, 0.4558, 0.4462, 0.4364, 0.4334, 0.4254, 0.4704, 0.4624, 0.7722, 0.4422, 0.9246, 0.9464, 0.8512, 0.381, 0.369, 0.3612, 0.3566, 0.354, 0.3534, 0.3504, 0.3522, 0.3496, 0.3488, 0.8054, 0.9456, 0.8574, 0.713, 0.5222, 0.4212, 0.347, 0.3208, 0.3042, 0.2878, 0.2774, 0.2642, 0.2518, 0.249, 0.2464, 0.2324, 0.2282, 0.2226, 0.2196, 0.2214, 0.2166, 0.935, 0.2136, 0.2094, 0.256, 0.2066, 0.8282, 0.9298, 0.8958, 0.6938, 0.2372, 0.1964, 0.2026, 0.194, 0.192, 0.1898, 0.9318, 0.9396, 0.9268, 0.1904, 0.4628, 0.4722, 0.9338, 0.4156, 0.2914, 0.2732, 0.2184, 0.2114, 0.208, 0.2176, 0.264, 0.8068, 0.8562, 0.9028, 0.9496, 0.9318, 0.8784, 0.8282, 0.7812, 0.2448, 0.1908, 0.1748, 0.1638, 0.1594, 0.1572, 0.1564, 0.1664, 0.1632, 0.1556, 0.1542, 0.1538, 0.1528, 0.1526, 0.151, 0.587, 0.7804, 0.9086, 0.859, 0.6612, 0.5284, 0.4608, 0.405, 0.379, 0.3072, 0.2798, 0.1912, 0.1662, 0.1534, 0.148, 0.1444, 0.1406, 0.1382, 0.1316, 0.1272, 0.127, 0.1262, 0.1258, 0.125, 0.1246, 0.9454, 0.9478, 0.9496, 0.9464, 0.9436, 0.1248, 0.137, 0.1408, 0.139, 0.1388, 0.9466, 0.9482, 0.9466, 0.3424, 0.8516, 0.2872, 0.2522, 0.9398, 0.95, 0.9338, 0.2214, 0.1862, 0.1686, 0.161, 0.1332, 0.8764, 0.885, 0.8922, 0.9012, 0.9108, 0.9192, 0.9286, 0.9368, 0.9414, 0.9476, 0.9446, 0.9388, 0.9328, 0.9246, 0.9144, 0.9046, 0.8968, 0.8886, 0.8802, 0.8726, 0.1326, 0.1488, 0.15, 0.226, 0.205, 0.2262, 0.1616, 0.1504, 0.1458, 0.1344, 0.9484, 0.9426, 0.1326, 0.1332, 0.1302, 0.1282, 0.1292, 0.1326, 0.3448, 0.3634, 0.8334, 0.2218, 0.1808, 0.16, 0.147, 0.1438, 0.136, 0.137, 0.1432, 0.15, 0.7976, 0.9222, 0.949, 0.8728, 0.6672, 0.5012, 0.2948, 0.2446, 0.1718, 0.1536, 0.1496, 0.1466, 0.515, 0.8438, 0.872, 0.8946, 0.9118, 0.9298, 0.945, 0.9374, 0.9216, 0.9014, 0.8864, 0.8598, 0.8344, 0.1364, 0.1092, 0.0926, 0.088, 0.083, 0.0792, 0.0838, 0.09, 0.0996, 0.1134, 0.3052, 0.6434, 0.7774, 0.849, 0.9084, 0.9464, 0.9318, 0.8852, 0.8266, 0.7146, 0.5678, 0.2574, 0.1224, 0.061, 0.0282, 0.0236, 0.0218, 0.0208, 0.0212, 0.0204, 0.0202, 0.0202, 0.0206, 0.0214, 0.0212, 0.0212, 0.021, 0.0208, 0.021, 0.021, 0.8844, 0.9466, 0.915, 0.8244, 0.53, 0.2912, 0.061, 0.0274, 0.0288, 0.102, 0.4308, 0.2094, 0.0268, 0.0248, 0.025, 0.0272, 0.0302, 0.0378, 0.0422, 0.0504, 0.0636, 0.0772, 0.0908, 0.113, 0.1386, 0.149, 0.1578, 0.165, 0.1748, 0.1838, 0.191, 0.1996, 0.9002, 0.942, 0.9254, 0.8814, 0.3882, 0.3068, 0.8816, 0.4218, 0.378, 0.4226, 0.4136, 0.3956, 0.4026, 0.432, 0.455, 0.4684, 0.484, 0.5004, 0.5174, 0.531, 0.5488, 0.5664, 0.5842, 0.6014, 0.65, 0.8906, 0.892, 0.8032, 0.8182, 0.8352, 0.8576, 0.8786, 0.8974, 0.9184], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/ARID.gap.json b/pfam_gap_rates/ARID.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..2a404721c72cd236e1323bd17aad56aa64fa8ce4
--- /dev/null
+++ b/pfam_gap_rates/ARID.gap.json
@@ -0,0 +1 @@
+{"family": "ARID", "n_seqs": 1440, "length": 97, "gap_rates": [0.9006944444444445, 0.48819444444444443, 0.30069444444444443, 0.19444444444444445, 0.1638888888888889, 0.14652777777777778, 0.12708333333333333, 0.11736111111111111, 0.10833333333333334, 0.10486111111111111, 0.10277777777777777, 0.10069444444444445, 0.09583333333333334, 0.09375, 0.09513888888888888, 0.09652777777777778, 0.08263888888888889, 0.07708333333333334, 0.29583333333333334, 0.07777777777777778, 0.9493055555555555, 0.8243055555555555, 0.22361111111111112, 0.07708333333333334, 0.05416666666666667, 0.044444444444444446, 0.9465277777777777, 0.9388888888888889, 0.03888888888888889, 0.03680555555555556, 0.02847222222222222, 0.017361111111111112, 0.015277777777777777, 0.015277777777777777, 0.013194444444444444, 0.013194444444444444, 0.011805555555555555, 0.011111111111111112, 0.009027777777777777, 0.007638888888888889, 0.006944444444444444, 0.005555555555555556, 0.004861111111111111, 0.002777777777777778, 0.002777777777777778, 0.0125, 0.010416666666666666, 0.011805555555555555, 0.011111111111111112, 0.005555555555555556, 0.004861111111111111, 0.00625, 0.0125, 0.06597222222222222, 0.027777777777777776, 0.93125, 0.030555555555555555, 0.03611111111111111, 0.03333333333333333, 0.02013888888888889, 0.020833333333333332, 0.020833333333333332, 0.020833333333333332, 0.022222222222222223, 0.022222222222222223, 0.022222222222222223, 0.022916666666666665, 0.03819444444444445, 0.029166666666666667, 0.03611111111111111, 0.11180555555555556, 0.29791666666666666, 0.4861111111111111, 0.8694444444444445, 0.9263888888888889, 0.7590277777777777, 0.3763888888888889, 0.1423611111111111, 0.8743055555555556, 0.06180555555555556, 0.04861111111111111, 0.03958333333333333, 0.0375, 0.03611111111111111, 0.035416666666666666, 0.034722222222222224, 0.04375, 0.04513888888888889, 0.04513888888888889, 0.04583333333333333, 0.04861111111111111, 0.05694444444444444, 0.0625, 0.06527777777777778, 0.08263888888888889, 0.1, 0.18472222222222223], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/ATG_C.gap.json b/pfam_gap_rates/ATG_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..02f2c7088985ec014c151f37c4bbec4a40a20fcd
--- /dev/null
+++ b/pfam_gap_rates/ATG_C.gap.json
@@ -0,0 +1 @@
+{"family": "ATG_C", "n_seqs": 471, "length": 97, "gap_rates": [0.7876857749469215, 0.6687898089171974, 0.45222929936305734, 0.2526539278131635, 0.17197452229299362, 0.11464968152866242, 0.07855626326963906, 0.07430997876857749, 0.036093418259023353, 0.01910828025477707, 0.014861995753715499, 0.012738853503184714, 0.012738853503184714, 0.012738853503184714, 0.012738853503184714, 0.012738853503184714, 0.012738853503184714, 0.012738853503184714, 0.012738853503184714, 0.012738853503184714, 0.012738853503184714, 0.012738853503184714, 0.012738853503184714, 0.008492569002123142, 0.008492569002123142, 0.008492569002123142, 0.008492569002123142, 0.004246284501061571, 0.0021231422505307855, 0.010615711252653927, 0.0021231422505307855, 0.0021231422505307855, 0.004246284501061571, 0.0021231422505307855, 0.004246284501061571, 0.004246284501061571, 0.004246284501061571, 0.0021231422505307855, 0.0021231422505307855, 0.016985138004246284, 0.04246284501061571, 0.04246284501061571, 0.027600849256900213, 0.8938428874734607, 0.02335456475583864, 0.025477707006369428, 0.02335456475583864, 0.006369426751592357, 0.004246284501061571, 0.004246284501061571, 0.004246284501061571, 0.006369426751592357, 0.004246284501061571, 0.004246284501061571, 0.0021231422505307855, 0.0021231422505307855, 0.0021231422505307855, 0.0021231422505307855, 0.0021231422505307855, 0.0021231422505307855, 0.0021231422505307855, 0.0021231422505307855, 0.0021231422505307855, 0.0021231422505307855, 0.0021231422505307855, 0.0021231422505307855, 0.0021231422505307855, 0.0021231422505307855, 0.0021231422505307855, 0.0021231422505307855, 0.0021231422505307855, 0.004246284501061571, 0.006369426751592357, 0.006369426751592357, 0.006369426751592357, 0.006369426751592357, 0.006369426751592357, 0.006369426751592357, 0.006369426751592357, 0.006369426751592357, 0.006369426751592357, 0.008492569002123142, 0.025477707006369428, 0.07643312101910828, 0.2611464968152866, 0.29723991507430997, 0.3184713375796178, 0.3630573248407643, 0.38004246284501064, 0.39278131634819535, 0.43312101910828027, 0.445859872611465, 0.44798301486199577, 0.46709129511677283, 0.4861995753715499, 0.4883227176220807, 0.5668789808917197], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/ATP-grasp.gap.json b/pfam_gap_rates/ATP-grasp.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b07d519e28b505ac06ca1015a526de72dd3bea35
--- /dev/null
+++ b/pfam_gap_rates/ATP-grasp.gap.json
@@ -0,0 +1 @@
+{"family": "ATP-grasp", "n_seqs": 1852, "length": 186, "gap_rates": [0.34557235421166305, 0.13876889848812096, 0.0826133909287257, 0.06911447084233262, 0.06479481641468683, 0.058855291576673865, 0.056155507559395246, 0.05075593952483801, 0.04913606911447084, 0.048056155507559394, 0.047516198704103674, 0.04643628509719223, 0.044816414686825054, 0.04427645788336933, 0.04265658747300216, 0.04103671706263499, 0.058855291576673865, 0.9416846652267818, 0.9146868250539957, 0.05129589632829374, 0.04697624190064795, 0.044816414686825054, 0.04427645788336933, 0.041576673866090715, 0.06803455723542116, 0.050215982721382287, 0.03833693304535637, 0.036177105831533475, 0.061555075593952485, 0.02267818574514039, 0.025377969762419007, 0.0183585313174946, 0.017278617710583154, 0.017278617710583154, 0.01673866090712743, 0.26727861771058314, 0.01997840172786177, 0.01997840172786177, 0.018898488120950324, 0.017818574514038878, 0.017818574514038878, 0.01673866090712743, 0.017818574514038878, 0.017278617710583154, 0.018898488120950324, 0.0183585313174946, 0.018898488120950324, 0.0183585313174946, 0.0183585313174946, 0.017818574514038878, 0.019438444924406047, 0.018898488120950324, 0.018898488120950324, 0.021058315334773217, 0.023758099352051837, 0.023218142548596114, 0.023218142548596114, 0.023218142548596114, 0.026457883369330453, 0.03023758099352052, 0.038876889848812095, 0.04319654427645788, 0.5950323974082073, 0.7073434125269978, 0.7516198704103672, 0.7375809935205183, 0.6916846652267818, 0.5529157667386609, 0.15442764578833693, 0.117170626349892, 0.06911447084233262, 0.05939524838012959, 0.017278617710583154, 0.017278617710583154, 0.017278617710583154, 0.017278617710583154, 0.01673866090712743, 0.016198704103671708, 0.01673866090712743, 0.0183585313174946, 0.024838012958963283, 0.023758099352051837, 0.023758099352051837, 0.024838012958963283, 0.02429805615550756, 0.023758099352051837, 0.024838012958963283, 0.023758099352051837, 0.023758099352051837, 0.023758099352051837, 0.025377969762419007, 0.9136069114470843, 0.906047516198704, 0.02429805615550756, 0.028077753779697623, 0.02591792656587473, 0.028617710583153346, 0.17278617710583152, 0.9136069114470843, 0.9055075593952484, 0.0275377969762419, 0.026997840172786176, 0.0275377969762419, 0.028617710583153346, 0.028617710583153346, 0.0275377969762419, 0.028617710583153346, 0.028077753779697623, 0.028077753779697623, 0.0275377969762419, 0.028077753779697623, 0.0275377969762419, 0.0275377969762419, 0.026457883369330453, 0.026457883369330453, 0.02591792656587473, 0.02591792656587473, 0.026997840172786176, 0.026457883369330453, 0.026457883369330453, 0.0275377969762419, 0.03509719222462203, 0.032937365010799136, 0.042116630669546434, 0.8909287257019438, 0.0458963282937365, 0.032397408207343416, 0.03995680345572354, 0.03725701943844492, 0.9346652267818575, 0.028077753779697623, 0.026997840172786176, 0.022138228941684664, 0.022138228941684664, 0.022138228941684664, 0.022138228941684664, 0.022138228941684664, 0.02267818574514039, 0.02267818574514039, 0.02267818574514039, 0.023218142548596114, 0.023758099352051837, 0.023758099352051837, 0.023758099352051837, 0.023758099352051837, 0.023758099352051837, 0.023218142548596114, 0.02429805615550756, 0.02429805615550756, 0.02429805615550756, 0.025377969762419007, 0.02591792656587473, 0.02591792656587473, 0.026457883369330453, 0.02591792656587473, 0.024838012958963283, 0.024838012958963283, 0.024838012958963283, 0.02429805615550756, 0.31965442764578833, 0.20140388768898487, 0.03131749460043196, 0.09341252699784017, 0.9352051835853131, 0.7494600431965442, 0.03401727861771058, 0.028617710583153346, 0.029697624190064796, 0.03131749460043196, 0.03455723542116631, 0.0367170626349892, 0.03995680345572354, 0.041576673866090715, 0.04697624190064795, 0.0550755939524838, 0.058855291576673865, 0.05939524838012959, 0.05939524838012959, 0.06047516198704104, 0.06263498920086392, 0.06911447084233262, 0.0755939524838013, 0.07829373650107992, 0.08801295896328294, 0.10205183585313175, 0.33585313174946], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/ATP-sulfurylase.gap.json b/pfam_gap_rates/ATP-sulfurylase.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..3eaede3b9b7af2a5bbf80c0d823a75abe4caf9b6
--- /dev/null
+++ b/pfam_gap_rates/ATP-sulfurylase.gap.json
@@ -0,0 +1 @@
+{"family": "ATP-sulfurylase", "n_seqs": 887, "length": 236, "gap_rates": [0.8500563697857948, 0.46561443066516345, 0.24239007891770012, 0.14994363021420518, 0.08680947012401354, 0.0665163472378805, 0.060879368658399095, 0.05975197294250282, 0.058624577226606536, 0.05636978579481398, 0.05636978579481398, 0.0552423900789177, 0.0552423900789177, 0.05298759864712514, 0.08568207440811725, 0.08455467869222097, 0.060879368658399095, 0.05186020293122886, 0.0496054114994363, 0.04735062006764374, 0.048478015783540024, 0.046223224351747465, 0.046223224351747465, 0.046223224351747465, 0.046223224351747465, 0.046223224351747465, 0.04509582863585118, 0.04509582863585118, 0.04509582863585118, 0.04509582863585118, 0.043968432919954906, 0.043968432919954906, 0.04735062006764374, 0.04735062006764374, 0.043968432919954906, 0.043968432919954906, 0.043968432919954906, 0.04284103720405862, 0.04171364148816235, 0.04171364148816235, 0.04171364148816235, 0.04284103720405862, 0.04284103720405862, 0.043968432919954906, 0.37993235625704624, 0.8072153325817362, 0.4047350620067644, 0.060879368658399095, 0.0496054114994363, 0.06200676437429538, 0.31679819616685456, 0.7282976324689966, 0.7564825253664036, 0.9210822998872604, 0.7294250281848929, 0.7113866967305524, 0.043968432919954906, 0.040586245772266064, 0.03945885005636979, 0.040586245772266064, 0.04284103720405862, 0.04284103720405862, 0.04284103720405862, 0.040586245772266064, 0.040586245772266064, 0.04509582863585118, 0.040586245772266064, 0.040586245772266064, 0.03945885005636979, 0.03945885005636979, 0.03945885005636979, 0.038331454340473504, 0.038331454340473504, 0.03720405862457723, 0.03720405862457723, 0.03720405862457723, 0.03945885005636979, 0.03945885005636979, 0.038331454340473504, 0.03720405862457723, 0.03720405862457723, 0.03720405862457723, 0.03720405862457723, 0.03494926719278467, 0.03494926719278467, 0.03720405862457723, 0.741826381059752, 0.34498308906426156, 0.038331454340473504, 0.03720405862457723, 0.03720405862457723, 0.036076662908680945, 0.04509582863585118, 0.03720405862457723, 0.03720405862457723, 0.038331454340473504, 0.03720405862457723, 0.036076662908680945, 0.036076662908680945, 0.03494926719278467, 0.033821871476888386, 0.033821871476888386, 0.03156708004509583, 0.03156708004509583, 0.03269447576099211, 0.03269447576099211, 0.03269447576099211, 0.03156708004509583, 0.03269447576099211, 0.03269447576099211, 0.03494926719278467, 0.03494926719278467, 0.03494926719278467, 0.03494926719278467, 0.03494926719278467, 0.03494926719278467, 0.03494926719278467, 0.036076662908680945, 0.036076662908680945, 0.03720405862457723, 0.03720405862457723, 0.038331454340473504, 0.038331454340473504, 0.038331454340473504, 0.038331454340473504, 0.038331454340473504, 0.038331454340473504, 0.040586245772266064, 0.043968432919954906, 0.04284103720405862, 0.043968432919954906, 0.043968432919954906, 0.04284103720405862, 0.04735062006764374, 0.04735062006764374, 0.04735062006764374, 0.04509582863585118, 0.45659526493799324, 0.45659526493799324, 0.46674182638105977, 0.9481397970687712, 0.9188275084554679, 0.45659526493799324, 0.45659526493799324, 0.45434047350620066, 0.0496054114994363, 0.048478015783540024, 0.048478015783540024, 0.048478015783540024, 0.048478015783540024, 0.046223224351747465, 0.046223224351747465, 0.046223224351747465, 0.04735062006764374, 0.048478015783540024, 0.048478015783540024, 0.048478015783540024, 0.046223224351747465, 0.046223224351747465, 0.043968432919954906, 0.08680947012401354, 0.06426155580608793, 0.939120631341601, 0.9470124013528749, 0.9492671927846674, 0.9481397970687712, 0.9470124013528749, 0.7158962795941376, 0.043968432919954906, 0.04284103720405862, 0.04171364148816235, 0.04171364148816235, 0.04171364148816235, 0.040586245772266064, 0.040586245772266064, 0.040586245772266064, 0.040586245772266064, 0.04284103720405862, 0.043968432919954906, 0.043968432919954906, 0.043968432919954906, 0.043968432919954906, 0.043968432919954906, 0.043968432919954906, 0.043968432919954906, 0.043968432919954906, 0.04735062006764374, 0.043968432919954906, 0.0552423900789177, 0.11161217587373168, 0.2491544532130778, 0.16234498308906425, 0.09019165727170236, 0.06426155580608793, 0.9098083427282976, 0.3788049605411499, 0.048478015783540024, 0.04735062006764374, 0.05186020293122886, 0.048478015783540024, 0.04509582863585118, 0.04509582863585118, 0.04509582863585118, 0.04509582863585118, 0.04509582863585118, 0.04509582863585118, 0.04509582863585118, 0.04509582863585118, 0.043968432919954906, 0.04509582863585118, 0.04735062006764374, 0.048478015783540024, 0.048478015783540024, 0.048478015783540024, 0.0496054114994363, 0.05073280721533258, 0.05073280721533258, 0.05073280721533258, 0.0552423900789177, 0.05636978579481398, 0.06200676437429538, 0.06426155580608793, 0.06313416009019165, 0.06426155580608793, 0.06426155580608793, 0.06426155580608793, 0.0665163472378805, 0.06877113866967305, 0.07102593010146561, 0.07215332581736189, 0.07215332581736189, 0.07440811724915446, 0.08004509582863585, 0.09244644870349493, 0.19503945885005636, 0.8489289740698985], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/ATP-synt_D.gap.json b/pfam_gap_rates/ATP-synt_D.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a671fef9dcaceeccefda4a7f0cc45aa2176a5008
--- /dev/null
+++ b/pfam_gap_rates/ATP-synt_D.gap.json
@@ -0,0 +1 @@
+{"family": "ATP-synt_D", "n_seqs": 773, "length": 200, "gap_rates": [0.5433376455368694, 0.26002587322121606, 0.18628719275549807, 0.1203104786545925, 0.0815006468305304, 0.08020698576972833, 0.07761966364812418, 0.07632600258732213, 0.07632600258732213, 0.07632600258732213, 0.07632600258732213, 0.07503234152652005, 0.07373868046571798, 0.0724450194049159, 0.0724450194049159, 0.07115135834411385, 0.07115135834411385, 0.07115135834411385, 0.06985769728331177, 0.06985769728331177, 0.06985769728331177, 0.06985769728331177, 0.07503234152652005, 0.07503234152652005, 0.07503234152652005, 0.07503234152652005, 0.07503234152652005, 0.07503234152652005, 0.07632600258732213, 0.07503234152652005, 0.07373868046571798, 0.06597671410090557, 0.0646830530401035, 0.0646830530401035, 0.0646830530401035, 0.06338939197930142, 0.06338939197930142, 0.06338939197930142, 0.062095730918499355, 0.0685640362225097, 0.06338939197930142, 0.059508408796895215, 0.05821474773609314, 0.04398447606727038, 0.04398447606727038, 0.042690815006468305, 0.042690815006468305, 0.04139715394566624, 0.04139715394566624, 0.04139715394566624, 0.04139715394566624, 0.04139715394566624, 0.04139715394566624, 0.04139715394566624, 0.04139715394566624, 0.042690815006468305, 0.16946959896507116, 0.1630012936610608, 0.5433376455368694, 0.1539456662354463, 0.1500646830530401, 0.04657179818887452, 0.04657179818887452, 0.4890038809831824, 0.5200517464424321, 0.3648124191461837, 0.0815006468305304, 0.07373868046571798, 0.07373868046571798, 0.15653298835705046, 0.15653298835705046, 0.1539456662354463, 0.1630012936610608, 0.24708926261319533, 0.12677878395860284, 0.111254851228978, 0.17076326002587322, 0.4036222509702458, 0.37645536869340235, 0.19016817593790428, 0.5730918499353169, 0.03622250970245795, 0.03492884864165589, 0.03234152652005175, 0.03234152652005175, 0.03363518758085381, 0.03492884864165589, 0.03363518758085381, 0.03363518758085381, 0.03363518758085381, 0.03492884864165589, 0.03492884864165589, 0.037516170763260026, 0.037516170763260026, 0.037516170763260026, 0.037516170763260026, 0.037516170763260026, 0.037516170763260026, 0.040103492884864166, 0.04657179818887452, 0.062095730918499355, 0.13971539456662355, 0.17852522639068563, 0.32470892626131953, 0.8279430789133247, 0.9197930142302717, 0.6093143596377749, 0.24579560155239327, 0.1384217335058215, 0.08020698576972833, 0.0815006468305304, 0.07373868046571798, 0.062095730918499355, 0.056921086675291076, 0.047865459249676584, 0.047865459249676584, 0.045278137128072445, 0.040103492884864166, 0.03880983182406209, 0.037516170763260026, 0.03622250970245795, 0.03622250970245795, 0.03622250970245795, 0.03622250970245795, 0.037516170763260026, 0.03880983182406209, 0.03622250970245795, 0.037516170763260026, 0.037516170763260026, 0.03622250970245795, 0.03622250970245795, 0.03622250970245795, 0.03622250970245795, 0.03622250970245795, 0.03492884864165589, 0.03492884864165589, 0.03492884864165589, 0.03363518758085381, 0.03492884864165589, 0.03492884864165589, 0.03363518758085381, 0.03363518758085381, 0.03363518758085381, 0.031047865459249677, 0.029754204398447608, 0.031047865459249677, 0.031047865459249677, 0.03492884864165589, 0.03492884864165589, 0.03492884864165589, 0.03622250970245795, 0.03622250970245795, 0.03622250970245795, 0.03622250970245795, 0.03622250970245795, 0.03492884864165589, 0.03622250970245795, 0.037516170763260026, 0.03622250970245795, 0.037516170763260026, 0.03880983182406209, 0.047865459249676584, 0.04657179818887452, 0.047865459249676584, 0.04657179818887452, 0.04398447606727038, 0.042690815006468305, 0.042690815006468305, 0.04398447606727038, 0.04398447606727038, 0.04398447606727038, 0.04398447606727038, 0.04398447606727038, 0.04398447606727038, 0.04398447606727038, 0.04398447606727038, 0.04398447606727038, 0.042690815006468305, 0.04139715394566624, 0.04139715394566624, 0.042690815006468305, 0.04398447606727038, 0.045278137128072445, 0.045278137128072445, 0.045278137128072445, 0.045278137128072445, 0.045278137128072445, 0.04657179818887452, 0.047865459249676584, 0.04915912031047866, 0.050452781371280724, 0.0517464424320828, 0.05304010349288486, 0.054333764553686936, 0.055627425614489, 0.06338939197930142, 0.07503234152652005, 0.0815006468305304, 0.16170763260025872, 0.6675291073738681], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/ATP-synt_F.gap.json b/pfam_gap_rates/ATP-synt_F.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..dd2ef50091a46f9e2982f6716a254f3f306a28ea
--- /dev/null
+++ b/pfam_gap_rates/ATP-synt_F.gap.json
@@ -0,0 +1 @@
+{"family": "ATP-synt_F", "n_seqs": 755, "length": 108, "gap_rates": [0.423841059602649, 0.19735099337748344, 0.08344370860927153, 0.059602649006622516, 0.051655629139072845, 0.04768211920529802, 0.04105960264900662, 0.8463576158940397, 0.03576158940397351, 0.03576158940397351, 0.031788079470198675, 0.02913907284768212, 0.02913907284768212, 0.02781456953642384, 0.026490066225165563, 0.025165562913907286, 0.02384105960264901, 0.02384105960264901, 0.022516556291390728, 0.02384105960264901, 0.022516556291390728, 0.022516556291390728, 0.026490066225165563, 0.5377483443708609, 0.5496688741721855, 0.5695364238410596, 0.5721854304635762, 0.5748344370860927, 0.6066225165562914, 0.8701986754966887, 0.8688741721854305, 0.5827814569536424, 0.5735099337748344, 0.5695364238410596, 0.5682119205298013, 0.5456953642384106, 0.5046357615894039, 0.018543046357615896, 0.022516556291390728, 0.03708609271523179, 0.02384105960264901, 0.022516556291390728, 0.02119205298013245, 0.019867549668874173, 0.019867549668874173, 0.019867549668874173, 0.019867549668874173, 0.019867549668874173, 0.019867549668874173, 0.019867549668874173, 0.019867549668874173, 0.02119205298013245, 0.23443708609271524, 0.8781456953642384, 0.045033112582781455, 0.018543046357615896, 0.017218543046357615, 0.017218543046357615, 0.017218543046357615, 0.01456953642384106, 0.01456953642384106, 0.015894039735099338, 0.015894039735099338, 0.017218543046357615, 0.015894039735099338, 0.013245033112582781, 0.013245033112582781, 0.019867549668874173, 0.02119205298013245, 0.02119205298013245, 0.026490066225165563, 0.026490066225165563, 0.026490066225165563, 0.025165562913907286, 0.02384105960264901, 0.025165562913907286, 0.026490066225165563, 0.02781456953642384, 0.02781456953642384, 0.02913907284768212, 0.4649006622516556, 0.7205298013245033, 0.026490066225165563, 0.02781456953642384, 0.026490066225165563, 0.026490066225165563, 0.02913907284768212, 0.02781456953642384, 0.02913907284768212, 0.033112582781456956, 0.04370860927152318, 0.0423841059602649, 0.046357615894039736, 0.052980132450331126, 0.05827814569536424, 0.1456953642384106, 0.12317880794701987, 0.1562913907284768, 0.1562913907284768, 0.1947019867549669, 0.16688741721854305, 0.1695364238410596, 0.1827814569536424, 0.1986754966887417, 0.21324503311258278, 0.22913907284768212, 0.29668874172185433, 0.44900662251655626], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/ATP_bind_1.gap.json b/pfam_gap_rates/ATP_bind_1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..4500e4fc8dead1be4fd507da1519a0ef05514f59
--- /dev/null
+++ b/pfam_gap_rates/ATP_bind_1.gap.json
@@ -0,0 +1 @@
+{"family": "ATP_bind_1", "n_seqs": 1641, "length": 286, "gap_rates": [0.24192565508836075, 0.1785496648385131, 0.1736745886654479, 0.15965874466788543, 0.15600243753808654, 0.15600243753808654, 0.15600243753808654, 0.15478366849482023, 0.15417428397318708, 0.15112736136502133, 0.15112736136502133, 0.1505179768433882, 0.14990859232175502, 0.14747105423522242, 0.1450335161486898, 0.14137720901889092, 0.14137720901889092, 0.14015843997562463, 0.14015843997562463, 0.13893967093235832, 0.13772090188909203, 0.13833028641072517, 0.13954905545399146, 0.37355271176112126, 0.3656307129798903, 0.3595368677635588, 0.3558805606337599, 0.3546617915904936, 0.35283363802559414, 0.3534430225472273, 0.35283363802559414, 0.35161486898232786, 0.35161486898232786, 0.352224253503961, 0.3510054844606947, 0.35283363802559414, 0.352224253503961, 0.3595368677635588, 0.35770871419865935, 0.3570993296770262, 0.35770871419865935, 0.3534430225472273, 0.35039609993906157, 0.34673979280926265, 0.34673979280926265, 0.3449116392443632, 0.125533211456429, 0.12431444241316271, 0.1194393662400975, 0.11517367458866545, 0.10968921389396709, 0.10786106032906764, 0.10603290676416818, 0.10298598415600244, 0.1035953686776356, 0.10420475319926874, 0.10054844606946983, 0.10054844606946983, 0.09932967702620353, 0.7355271176112127, 0.7215112736136502, 0.10603290676416818, 0.09750152346130408, 0.09628275441803778, 0.09262644728823888, 0.09140767824497258, 0.08775137111517367, 0.08775137111517367, 0.09018890920170627, 0.08775137111517367, 0.08714198659354053, 0.08714198659354053, 0.08714198659354053, 0.08531383302864107, 0.08531383302864107, 0.08653260207190737, 0.08348567946374162, 0.08348567946374162, 0.08348567946374162, 0.08409506398537477, 0.08226691042047532, 0.34125533211456427, 0.3461304082876295, 0.33455210237659966, 0.08836075563680683, 0.08531383302864107, 0.08409506398537477, 0.08957952468007313, 0.36867763558805605, 0.9378427787934186, 0.9427178549664839, 0.9451553930530164, 0.9494210847044485, 0.946983546617916, 0.943327239488117, 0.9378427787934186, 0.9378427787934186, 0.35161486898232786, 0.35892748324192564, 0.696526508226691, 0.35039609993906157, 0.3333333333333333, 0.935405240706886, 0.7812309567336989, 0.08287629494210846, 0.07678244972577697, 0.07678244972577697, 0.07678244972577697, 0.07617306520414381, 0.07617306520414381, 0.07556368068251067, 0.07556368068251067, 0.07739183424741011, 0.07861060329067641, 0.07861060329067641, 0.07982937233394272, 0.07982937233394272, 0.08104814137720902, 0.08165752589884218, 0.08165752589884218, 0.08165752589884218, 0.08165752589884218, 0.08165752589884218, 0.07982937233394272, 0.07800121876904327, 0.3449116392443632, 0.3436928702010969, 0.34430225472273, 0.3424741011578306, 0.3436928702010969, 0.34308348567946373, 0.34308348567946373, 0.35770871419865935, 0.8519195612431444, 0.5904936014625228, 0.09323583180987204, 0.08714198659354053, 0.08470444850700792, 0.08531383302864107, 0.08653260207190737, 0.08653260207190737, 0.08592321755027423, 0.08653260207190737, 0.08653260207190737, 0.08592321755027423, 0.08897014015843997, 0.08897014015843997, 0.08957952468007313, 0.08897014015843997, 0.09018890920170627, 0.08653260207190737, 0.08897014015843997, 0.8092626447288239, 0.8153564899451554, 0.7897623400365631, 0.10968921389396709, 0.10603290676416818, 0.10542352224253504, 0.09018890920170627, 0.09262644728823888, 0.09506398537477148, 0.09628275441803778, 0.3229737964655698, 0.3211456429006703, 0.3174893357708714, 0.3162705667276051, 0.31566118220597195, 0.31322364411943937, 0.30834856794637416, 0.27178549664838514, 0.27117611212675197, 0.2626447288238879, 0.08775137111517367, 0.08653260207190737, 0.08592321755027423, 0.08592321755027423, 0.08531383302864107, 0.08531383302864107, 0.08531383302864107, 0.08531383302864107, 0.08531383302864107, 0.08531383302864107, 0.08531383302864107, 0.08592321755027423, 0.08714198659354053, 0.09018890920170627, 0.14381474710542352, 0.1316270566727605, 0.558805606337599, 0.5533211456429007, 0.7873248019500305, 0.931139549055454, 0.6721511273613651, 0.33638025594149906, 0.32480195003046924, 0.3235831809872029, 0.3235831809872029, 0.3217550274223035, 0.3217550274223035, 0.3223644119439366, 0.32053625837903715, 0.3235831809872029, 0.3333333333333333, 0.33089579524680074, 0.34064594759293115, 0.34125533211456427, 0.34064594759293115, 0.3436928702010969, 0.3436928702010969, 0.35283363802559414, 0.3595368677635588, 0.36745886654478976, 0.37294332723948814, 0.34673979280926265, 0.3753808653260207, 0.48202315661182205, 0.5368677635588056, 0.6563071297989032, 0.7696526508226691, 0.8318098720292505, 0.8677635588056063, 0.8836075563680682, 0.894576477757465, 0.9104204753199269, 0.9238269347958562, 0.9396709323583181, 0.9451553930530164, 0.9451553930530164, 0.9421084704448507, 0.9335770871419866, 0.9165143205362584, 0.898842169408897, 0.8872638634978671, 0.8769043266301036, 0.8525289457647776, 0.7830591102985984, 0.7544180377818404, 0.6166971358927483, 0.5198049969530774, 0.3918342474101158, 0.3668494820231566, 0.2851919561243144, 0.1736745886654479, 0.16697135892748324, 0.16087751371115175, 0.1614868982327849, 0.1614868982327849, 0.16026812918951858, 0.1614868982327849, 0.1614868982327849, 0.1614868982327849, 0.16331505179768435, 0.16575258988421693, 0.16819012797074953, 0.16819012797074953, 0.170018281535649, 0.170018281535649, 0.1712370505789153, 0.1724558196221816, 0.5746496039000609, 0.1761121267519805, 0.1761121267519805, 0.1761121267519805, 0.17794028031687995, 0.17794028031687995, 0.1773308957952468, 0.17794028031687995, 0.18037781840341255, 0.18281535648994515, 0.1834247410115783, 0.1846435100548446, 0.1858622790981109, 0.18525289457647776, 0.18525289457647776, 0.1858622790981109, 0.18647166361974407, 0.18708104814137722, 0.18890920170627665, 0.19256550883607557, 0.19622181596587446, 0.20475319926873858, 0.21937842778793418, 0.24923826934795856, 0.34795856185252894, 0.5661182205971969, 0.8580134064594759], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/ATPase_2.gap.json b/pfam_gap_rates/ATPase_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ecfd3e973deb79ab333cb0e5411676f81d5f4f83
--- /dev/null
+++ b/pfam_gap_rates/ATPase_2.gap.json
@@ -0,0 +1 @@
+{"family": "ATPase_2", "n_seqs": 589, "length": 283, "gap_rates": [0.25806451612903225, 0.18166383701188454, 0.16808149405772496, 0.0899830220713073, 0.0831918505942275, 0.07470288624787776, 0.0730050933786078, 0.07130730050933787, 0.06621392190152801, 0.06451612903225806, 0.057724957555178265, 0.05602716468590832, 0.05602716468590832, 0.05432937181663837, 0.05263157894736842, 0.05602716468590832, 0.06112054329371817, 0.1697792869269949, 0.14431239388794567, 0.08828522920203735, 0.0730050933786078, 0.059422750424448216, 0.04074702886247878, 0.04584040747028863, 0.04753820033955857, 0.06112054329371817, 0.022071307300509338, 0.01867572156196944, 0.01867572156196944, 0.015280135823429542, 0.015280135823429542, 0.015280135823429542, 0.015280135823429542, 0.015280135823429542, 0.015280135823429542, 0.015280135823429542, 0.015280135823429542, 0.01867572156196944, 0.023769100169779286, 0.022071307300509338, 0.02037351443123939, 0.02037351443123939, 0.01867572156196944, 0.01867572156196944, 0.9456706281833617, 0.44991511035653653, 0.4567062818336163, 0.5551782682512734, 0.4855687606112054, 0.4567062818336163, 0.9303904923599321, 0.9066213921901528, 0.15110356536502548, 0.0899830220713073, 0.057724957555178265, 0.05602716468590832, 0.04753820033955857, 0.044142614601018676, 0.04074702886247878, 0.04923599320882852, 0.04074702886247878, 0.03904923599320883, 0.044142614601018676, 0.035653650254668934, 0.03904923599320883, 0.03225806451612903, 0.03395585738539898, 0.03225806451612903, 0.035653650254668934, 0.04074702886247878, 0.050933786078098474, 0.6247877758913413, 0.6044142614601019, 0.7028862478777589, 0.7928692699490663, 0.830220713073005, 0.8930390492359932, 0.9252971137521222, 0.9490662139219015, 0.9032258064516129, 0.8624787775891342, 0.8183361629881154, 0.7402376910016978, 0.6842105263157895, 0.5908319185059423, 0.6129032258064516, 0.5280135823429541, 0.48047538200339557, 0.20203735144312393, 0.1969439728353141, 0.21222410865874364, 0.19185059422750425, 0.1460101867572156, 0.14091680814940577, 0.12903225806451613, 0.05432937181663837, 0.7181663837011885, 0.7402376910016978, 0.7538200339558574, 0.7640067911714771, 0.7809847198641766, 0.7945670628183361, 0.8200339558573854, 0.8471986417657046, 0.8981324278438031, 0.9219015280135824, 0.9354838709677419, 0.9473684210526315, 0.9439728353140917, 0.9286926994906621, 0.9032258064516129, 0.8692699490662139, 0.8353140916808149, 0.8030560271646859, 0.7843803056027164, 0.7741935483870968, 0.7572156196943973, 0.7487266553480475, 0.733446519524618, 0.7079796264855688, 0.14431239388794567, 0.16298811544991512, 0.12393887945670629, 0.10865874363327674, 0.0899830220713073, 0.09168081494057725, 0.16298811544991512, 0.16129032258064516, 0.1833616298811545, 0.6366723259762309, 0.631578947368421, 0.6230899830220713, 0.6808149405772496, 0.631578947368421, 0.8353140916808149, 0.9168081494057725, 0.7436332767402377, 0.5619694397283531, 0.4838709677419355, 0.37860780984719866, 0.1765704584040747, 0.12054329371816638, 0.08149405772495756, 0.050933786078098474, 0.04074702886247878, 0.03395585738539898, 0.03225806451612903, 0.035653650254668934, 0.03735144312393888, 0.03395585738539898, 0.03395585738539898, 0.03904923599320883, 0.04074702886247878, 0.05263157894736842, 0.03735144312393888, 0.04074702886247878, 0.06281833616298811, 0.23429541595925296, 0.15619694397283532, 0.09847198641765705, 0.8047538200339559, 0.6926994906621392, 0.07809847198641766, 0.025466893039049237, 0.022071307300509338, 0.022071307300509338, 0.022071307300509338, 0.023769100169779286, 0.023769100169779286, 0.023769100169779286, 0.023769100169779286, 0.025466893039049237, 0.027164685908319185, 0.028862478777589132, 0.7809847198641766, 0.7741935483870968, 0.35144312393887944, 0.3853989813242784, 0.11205432937181664, 0.42784380305602715, 0.3701188455008489, 0.0967741935483871, 0.07979626485568761, 0.07979626485568761, 0.06960950764006792, 0.05432937181663837, 0.050933786078098474, 0.04753820033955857, 0.04753820033955857, 0.04923599320882852, 0.05432937181663837, 0.05602716468590832, 0.06451612903225806, 0.06791171477079797, 0.2699490662139219, 0.26485568760611206, 0.19864176570458403, 0.0899830220713073, 0.07809847198641766, 0.07640067911714771, 0.057724957555178265, 0.06621392190152801, 0.06451612903225806, 0.06451612903225806, 0.07130730050933787, 0.0730050933786078, 0.06621392190152801, 0.07130730050933787, 0.0730050933786078, 0.07130730050933787, 0.0730050933786078, 0.0730050933786078, 0.07130730050933787, 0.0730050933786078, 0.07640067911714771, 0.9422750424448217, 0.49575551782682514, 0.19864176570458403, 0.19524617996604415, 0.18845500848896435, 0.17487266553480477, 0.1697792869269949, 0.17147707979626486, 0.16468590831918506, 0.10186757215619695, 0.10186757215619695, 0.100169779286927, 0.100169779286927, 0.1035653650254669, 0.1035653650254669, 0.10526315789473684, 0.35823429541595925, 0.10696095076400679, 0.10696095076400679, 0.10526315789473684, 0.10526315789473684, 0.10526315789473684, 0.10696095076400679, 0.2427843803056027, 0.24448217317487267, 0.24108658743633277, 0.22071307300509338, 0.1935483870967742, 0.14431239388794567, 0.12903225806451613, 0.12563667232597622, 0.13242784380305603, 0.13242784380305603, 0.13242784380305603, 0.31918505942275044, 0.5534804753820034, 0.5382003395585738, 0.5093378607809848, 0.4906621392190153, 0.7589134125636672, 0.4601018675721562, 0.4770797962648557, 0.3548387096774194, 0.9100169779286927, 0.9354838709677419, 0.830220713073005, 0.16129032258064516, 0.16129032258064516, 0.1460101867572156, 0.14261460101867574, 0.14091680814940577, 0.14261460101867574, 0.14091680814940577, 0.13921901528013583, 0.14261460101867574, 0.1460101867572156, 0.15110356536502548, 0.15449915110356535, 0.16298811544991512, 0.15789473684210525, 0.16468590831918506, 0.1697792869269949, 0.19015280135823429, 0.21561969439728354, 0.2920203735144312, 0.366723259762309, 0.5365025466893039, 0.8030560271646859], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/AbiEi_3_N.gap.json b/pfam_gap_rates/AbiEi_3_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..1d5f72e3cc5963154dc30a145945bc9fc53404d6
--- /dev/null
+++ b/pfam_gap_rates/AbiEi_3_N.gap.json
@@ -0,0 +1 @@
+{"family": "AbiEi_3_N", "n_seqs": 102, "length": 99, "gap_rates": [0.8137254901960784, 0.5294117647058824, 0.35294117647058826, 0.2647058823529412, 0.23529411764705882, 0.19607843137254902, 0.19607843137254902, 0.19607843137254902, 0.18627450980392157, 0.14705882352941177, 0.14705882352941177, 0.14705882352941177, 0.13725490196078433, 0.12745098039215685, 0.12745098039215685, 0.10784313725490197, 0.08823529411764706, 0.08823529411764706, 0.0784313725490196, 0.0784313725490196, 0.0784313725490196, 0.0784313725490196, 0.08823529411764706, 0.06862745098039216, 0.058823529411764705, 0.058823529411764705, 0.058823529411764705, 0.058823529411764705, 0.049019607843137254, 0.049019607843137254, 0.049019607843137254, 0.049019607843137254, 0.049019607843137254, 0.049019607843137254, 0.049019607843137254, 0.049019607843137254, 0.049019607843137254, 0.049019607843137254, 0.049019607843137254, 0.049019607843137254, 0.049019607843137254, 0.049019607843137254, 0.049019607843137254, 0.049019607843137254, 0.049019607843137254, 0.049019607843137254, 0.0392156862745098, 0.0392156862745098, 0.0392156862745098, 0.0196078431372549, 0.0196078431372549, 0.00980392156862745, 0.00980392156862745, 0.00980392156862745, 0.0196078431372549, 0.00980392156862745, 0.7843137254901961, 0.803921568627451, 0.8921568627450981, 0.8823529411764706, 0.7843137254901961, 0.7745098039215687, 0.00980392156862745, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0196078431372549, 0.0196078431372549, 0.0196078431372549, 0.00980392156862745, 0.28431372549019607, 0.029411764705882353, 0.00980392156862745, 0.00980392156862745, 0.00980392156862745, 0.00980392156862745, 0.00980392156862745, 0.00980392156862745, 0.00980392156862745, 0.00980392156862745, 0.00980392156862745, 0.00980392156862745, 0.00980392156862745, 0.0196078431372549, 0.0196078431372549, 0.0196078431372549, 0.029411764705882353, 0.0392156862745098, 0.0392156862745098, 0.049019607843137254, 0.1568627450980392, 0.5490196078431373], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Abi_C.gap.json b/pfam_gap_rates/Abi_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..02ce4e96be390103d147f016c835bce3862068e4
--- /dev/null
+++ b/pfam_gap_rates/Abi_C.gap.json
@@ -0,0 +1 @@
+{"family": "Abi_C", "n_seqs": 118, "length": 85, "gap_rates": [0.7627118644067796, 0.3305084745762712, 0.1864406779661017, 0.15254237288135594, 0.13559322033898305, 0.11016949152542373, 0.09322033898305085, 0.07627118644067797, 0.07627118644067797, 0.07627118644067797, 0.07627118644067797, 0.1864406779661017, 0.2542372881355932, 0.3728813559322034, 0.3728813559322034, 0.3813559322033898, 0.3813559322033898, 0.3983050847457627, 0.3813559322033898, 0.3474576271186441, 0.3135593220338983, 0.288135593220339, 0.211864406779661, 0.059322033898305086, 0.05084745762711865, 0.0423728813559322, 0.0423728813559322, 0.0423728813559322, 0.03389830508474576, 0.01694915254237288, 0.00847457627118644, 0.00847457627118644, 0.00847457627118644, 0.00847457627118644, 0.00847457627118644, 0.00847457627118644, 0.00847457627118644, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.8389830508474576, 0.0, 0.0, 0.00847457627118644, 0.0, 0.01694915254237288, 0.1016949152542373, 0.23728813559322035, 0.2457627118644068, 0.3813559322033898, 0.8559322033898306, 0.025423728813559324, 0.025423728813559324, 0.025423728813559324, 0.025423728813559324, 0.025423728813559324, 0.025423728813559324, 0.025423728813559324, 0.025423728813559324, 0.025423728813559324, 0.025423728813559324, 0.025423728813559324, 0.025423728813559324, 0.025423728813559324, 0.03389830508474576, 0.03389830508474576, 0.03389830508474576, 0.03389830508474576, 0.03389830508474576, 0.03389830508474576, 0.03389830508474576, 0.03389830508474576, 0.0423728813559322, 0.0423728813559322, 0.05084745762711865, 0.2033898305084746, 0.711864406779661], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Acid_phosphat_B.gap.json b/pfam_gap_rates/Acid_phosphat_B.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b03541dfef714ab354fb576a68900d0733355fc1
--- /dev/null
+++ b/pfam_gap_rates/Acid_phosphat_B.gap.json
@@ -0,0 +1 @@
+{"family": "Acid_phosphat_B", "n_seqs": 540, "length": 266, "gap_rates": [0.9425925925925925, 0.9277777777777778, 0.9055555555555556, 0.8888888888888888, 0.8388888888888889, 0.7851851851851852, 0.7018518518518518, 0.6537037037037037, 0.6240740740740741, 0.6037037037037037, 0.587037037037037, 0.5814814814814815, 0.5777777777777777, 0.5740740740740741, 0.5722222222222222, 0.5703703703703704, 0.5592592592592592, 0.5537037037037037, 0.5518518518518518, 0.5462962962962963, 0.5518518518518518, 0.5518518518518518, 0.6203703703703703, 0.562962962962963, 0.55, 0.5388888888888889, 0.5277777777777778, 0.5092592592592593, 0.65, 0.5833333333333334, 0.5055555555555555, 0.4666666666666667, 0.4537037037037037, 0.43148148148148147, 0.40925925925925927, 0.39814814814814814, 0.3907407407407407, 0.3888888888888889, 0.45740740740740743, 0.5296296296296297, 0.387037037037037, 0.3592592592592593, 0.31666666666666665, 0.30925925925925923, 0.29259259259259257, 0.2814814814814815, 0.2777777777777778, 0.2722222222222222, 0.3, 0.28703703703703703, 0.2740740740740741, 0.26851851851851855, 0.2611111111111111, 0.23703703703703705, 0.23333333333333334, 0.2351851851851852, 0.2351851851851852, 0.23333333333333334, 0.22962962962962963, 0.22407407407407406, 0.2222222222222222, 0.2222222222222222, 0.2222222222222222, 0.22407407407407406, 0.22592592592592592, 0.2796296296296296, 0.25555555555555554, 0.23703703703703705, 0.6907407407407408, 0.7481481481481481, 0.8574074074074074, 0.9351851851851852, 0.9481481481481482, 0.9074074074074074, 0.7851851851851852, 0.7277777777777777, 0.6555555555555556, 0.24814814814814815, 0.22777777777777777, 0.1685185185185185, 0.1537037037037037, 0.14814814814814814, 0.14629629629629629, 0.14444444444444443, 0.14444444444444443, 0.14444444444444443, 0.14444444444444443, 0.14444444444444443, 0.14444444444444443, 0.14814814814814814, 0.14814814814814814, 0.14629629629629629, 0.15, 0.14814814814814814, 0.16111111111111112, 0.15, 0.1425925925925926, 0.26851851851851855, 0.2518518518518518, 0.21851851851851853, 0.18518518518518517, 0.16111111111111112, 0.14629629629629629, 0.14444444444444443, 0.1425925925925926, 0.15, 0.1425925925925926, 0.1425925925925926, 0.17962962962962964, 0.14074074074074075, 0.13333333333333333, 0.13148148148148148, 0.12962962962962962, 0.12962962962962962, 0.13518518518518519, 0.1259259259259259, 0.12407407407407407, 0.1259259259259259, 0.1259259259259259, 0.11851851851851852, 0.11851851851851852, 0.11296296296296296, 0.9074074074074074, 0.09814814814814815, 0.09814814814814815, 0.0962962962962963, 0.0962962962962963, 0.09259259259259259, 0.08518518518518518, 0.08333333333333333, 0.08148148148148149, 0.08333333333333333, 0.08518518518518518, 0.08518518518518518, 0.08888888888888889, 0.08703703703703704, 0.08333333333333333, 0.08518518518518518, 0.08148148148148149, 0.08333333333333333, 0.08148148148148149, 0.08333333333333333, 0.08333333333333333, 0.08148148148148149, 0.08148148148148149, 0.08148148148148149, 0.08148148148148149, 0.08148148148148149, 0.07777777777777778, 0.07777777777777778, 0.07592592592592592, 0.07592592592592592, 0.8333333333333334, 0.10185185185185185, 0.08518518518518518, 0.07592592592592592, 0.07407407407407407, 0.07407407407407407, 0.07592592592592592, 0.07407407407407407, 0.07407407407407407, 0.07407407407407407, 0.07407407407407407, 0.07407407407407407, 0.07407407407407407, 0.07592592592592592, 0.7851851851851852, 0.924074074074074, 0.95, 0.95, 0.95, 0.95, 0.9444444444444444, 0.8833333333333333, 0.7777777777777778, 0.08148148148148149, 0.08703703703703704, 0.9481481481481482, 0.08333333333333333, 0.16111111111111112, 0.08518518518518518, 0.08703703703703704, 0.08703703703703704, 0.09074074074074075, 0.0962962962962963, 0.09814814814814815, 0.11851851851851852, 0.1259259259259259, 0.1259259259259259, 0.17777777777777778, 0.7277777777777777, 0.2796296296296296, 0.24259259259259258, 0.4648148148148148, 0.40370370370370373, 0.36666666666666664, 0.337037037037037, 0.3, 0.2740740740740741, 0.1537037037037037, 0.15185185185185185, 0.12222222222222222, 0.12222222222222222, 0.12222222222222222, 0.12037037037037036, 0.12037037037037036, 0.11481481481481481, 0.11666666666666667, 0.11481481481481481, 0.11666666666666667, 0.37777777777777777, 0.1574074074074074, 0.11481481481481481, 0.11481481481481481, 0.11481481481481481, 0.11851851851851852, 0.12037037037037036, 0.12222222222222222, 0.12777777777777777, 0.12777777777777777, 0.13148148148148148, 0.13333333333333333, 0.13518518518518519, 0.1388888888888889, 0.1388888888888889, 0.14074074074074075, 0.1425925925925926, 0.8166666666666667, 0.8796296296296297, 0.7962962962962963, 0.7129629629629629, 0.7444444444444445, 0.7444444444444445, 0.7314814814814815, 0.2111111111111111, 0.20185185185185187, 0.3055555555555556, 0.16296296296296298, 0.7518518518518519, 0.7518518518518519, 0.7537037037037037, 0.7537037037037037, 0.7555555555555555, 0.8611111111111112, 0.9296296296296296, 0.8814814814814815, 0.7648148148148148, 0.7537037037037037, 0.7537037037037037, 0.7537037037037037, 0.7518518518518519, 0.7462962962962963, 0.1685185185185185, 0.16111111111111112, 0.1648148148148148, 0.16296296296296298, 0.16111111111111112, 0.1648148148148148, 0.1648148148148148, 0.1685185185185185, 0.20555555555555555, 0.20925925925925926, 0.20555555555555555, 0.23148148148148148, 0.3537037037037037, 0.7962962962962963], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Acyl-CoA_dh_M.gap.json b/pfam_gap_rates/Acyl-CoA_dh_M.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..9b1efec17e6c655ae8834ac87477175d53569175
--- /dev/null
+++ b/pfam_gap_rates/Acyl-CoA_dh_M.gap.json
@@ -0,0 +1 @@
+{"family": "Acyl-CoA_dh_M", "n_seqs": 5000, "length": 127, "gap_rates": [0.2262, 0.075, 0.0414, 0.0276, 0.0266, 0.0232, 0.0226, 0.0206, 0.0198, 0.9424, 0.017, 0.0152, 0.0148, 0.016, 0.0126, 0.011, 0.0096, 0.0074, 0.0056, 0.439, 0.0196, 0.7486, 0.063, 0.011, 0.0136, 0.0106, 0.0212, 0.1324, 0.041, 0.9496, 0.001, 0.0004, 0.0004, 0.0004, 0.9392, 0.9392, 0.9466, 0.9392, 0.9392, 0.0006, 0.0006, 0.0004, 0.009, 0.0042, 0.0028, 0.0012, 0.0168, 0.002, 0.0146, 0.0022, 0.8614, 0.922, 0.9216, 0.8028, 0.0014, 0.0014, 0.0018, 0.002, 0.0024, 0.0026, 0.0028, 0.0026, 0.0024, 0.8444, 0.9268, 0.6714, 0.3008, 0.2448, 0.2042, 0.151, 0.1378, 0.8524, 0.939, 0.4792, 0.236, 0.0118, 0.0068, 0.0066, 0.0066, 0.0094, 0.0058, 0.0058, 0.0058, 0.0062, 0.0062, 0.9428, 0.8722, 0.0234, 0.0562, 0.0418, 0.0096, 0.7906, 0.8118, 0.873, 0.9238, 0.945, 0.934, 0.9072, 0.8218, 0.8004, 0.7864, 0.0112, 0.0092, 0.0094, 0.0106, 0.011, 0.0118, 0.0128, 0.0822, 0.0642, 0.0774, 0.0696, 0.0802, 0.056, 0.0606, 0.093, 0.1006, 0.0804, 0.08, 0.0784, 0.0768, 0.0784, 0.0844, 0.0936, 0.1242, 0.2152, 0.4004], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Acyl-CoA_dh_N.gap.json b/pfam_gap_rates/Acyl-CoA_dh_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..cb8c798d1a1c4c07eed76540479e74826d685827
--- /dev/null
+++ b/pfam_gap_rates/Acyl-CoA_dh_N.gap.json
@@ -0,0 +1 @@
+{"family": "Acyl-CoA_dh_N", "n_seqs": 5000, "length": 133, "gap_rates": [0.5938, 0.3894, 0.3288, 0.2868, 0.2298, 0.1926, 0.1708, 0.158, 0.145, 0.1374, 0.1296, 0.1234, 0.1158, 0.1124, 0.1088, 0.1028, 0.0968, 0.099, 0.079, 0.9398, 0.0862, 0.0948, 0.1028, 0.0672, 0.0566, 0.053, 0.0526, 0.0668, 0.936, 0.89, 0.0618, 0.062, 0.059, 0.8254, 0.0462, 0.8706, 0.8832, 0.897, 0.9268, 0.9, 0.8886, 0.876, 0.8658, 0.051, 0.0436, 0.8984, 0.94, 0.8646, 0.045, 0.0312, 0.0202, 0.9302, 0.9472, 0.912, 0.0162, 0.0152, 0.0146, 0.0134, 0.0134, 0.0134, 0.0144, 0.0128, 0.0116, 0.0134, 0.0138, 0.0114, 0.0118, 0.0114, 0.0528, 0.0174, 0.0162, 0.0198, 0.025, 0.018, 0.0186, 0.0176, 0.0298, 0.018, 0.0114, 0.007, 0.0062, 0.0056, 0.005, 0.0052, 0.0048, 0.005, 0.005, 0.0046, 0.0042, 0.0044, 0.0086, 0.0106, 0.0106, 0.0078, 0.0142, 0.0862, 0.0668, 0.0566, 0.8786, 0.0854, 0.0344, 0.057, 0.036, 0.0948, 0.0598, 0.0896, 0.0464, 0.0476, 0.1602, 0.9442, 0.091, 0.0556, 0.0524, 0.0546, 0.0572, 0.0598, 0.062, 0.064, 0.0674, 0.0698, 0.0736, 0.0756, 0.08, 0.0888, 0.0908, 0.096, 0.099, 0.1018, 0.106, 0.1252, 0.147, 0.2074, 0.4608], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Acyl-CoA_ox_N.gap.json b/pfam_gap_rates/Acyl-CoA_ox_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..709d0de7a99aead5945350020ad0a4495f42ed57
--- /dev/null
+++ b/pfam_gap_rates/Acyl-CoA_ox_N.gap.json
@@ -0,0 +1 @@
+{"family": "Acyl-CoA_ox_N", "n_seqs": 518, "length": 130, "gap_rates": [0.5888030888030888, 0.3185328185328185, 0.2277992277992278, 0.16988416988416988, 0.15444015444015444, 0.14671814671814673, 0.13513513513513514, 0.13320463320463322, 0.13127413127413126, 0.13127413127413126, 0.1274131274131274, 0.12934362934362933, 0.12934362934362933, 0.2799227799227799, 0.11969111969111969, 0.11003861003861004, 0.09845559845559845, 0.0945945945945946, 0.0945945945945946, 0.0945945945945946, 0.09266409266409266, 0.0888030888030888, 0.08108108108108109, 0.08108108108108109, 0.07915057915057915, 0.07722007722007722, 0.07528957528957529, 0.07335907335907337, 0.07142857142857142, 0.07528957528957529, 0.07142857142857142, 0.06563706563706563, 0.0637065637065637, 0.06177606177606178, 0.6447876447876448, 0.07915057915057915, 0.07335907335907337, 0.06177606177606178, 0.05791505791505792, 0.055984555984555984, 0.052123552123552123, 0.052123552123552123, 0.052123552123552123, 0.05019305019305019, 0.05019305019305019, 0.05019305019305019, 0.05019305019305019, 0.05019305019305019, 0.05019305019305019, 0.05019305019305019, 0.05019305019305019, 0.05019305019305019, 0.05019305019305019, 0.052123552123552123, 0.05019305019305019, 0.052123552123552123, 0.05405405405405406, 0.052123552123552123, 0.05405405405405406, 0.052123552123552123, 0.05405405405405406, 0.05405405405405406, 0.05405405405405406, 0.07915057915057915, 0.11969111969111969, 0.16216216216216217, 0.5057915057915058, 0.7374517374517374, 0.7393822393822393, 0.747104247104247, 0.29922779922779924, 0.22972972972972974, 0.18146718146718147, 0.138996138996139, 0.9054054054054054, 0.9247104247104247, 0.8996138996138996, 0.30115830115830117, 0.23745173745173745, 0.277992277992278, 0.32432432432432434, 0.6235521235521235, 0.5540540540540541, 0.34555984555984554, 0.27413127413127414, 0.05405405405405406, 0.05405405405405406, 0.052123552123552123, 0.05019305019305019, 0.04633204633204633, 0.04054054054054054, 0.03861003861003861, 0.03088803088803089, 0.03088803088803089, 0.03088803088803089, 0.02895752895752896, 0.8416988416988417, 0.832046332046332, 0.02895752895752896, 0.02895752895752896, 0.06177606177606178, 0.02702702702702703, 0.015444015444015444, 0.015444015444015444, 0.015444015444015444, 0.015444015444015444, 0.015444015444015444, 0.015444015444015444, 0.019305019305019305, 0.021235521235521235, 0.017374517374517374, 0.017374517374517374, 0.019305019305019305, 0.019305019305019305, 0.021235521235521235, 0.023166023166023165, 0.023166023166023165, 0.032818532818532815, 0.02702702702702703, 0.03088803088803089, 0.0444015444015444, 0.05405405405405406, 0.09266409266409266, 0.15057915057915058, 0.1640926640926641, 0.1718146718146718, 0.18725868725868725, 0.2084942084942085, 0.23745173745173745, 0.38996138996138996], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Adap_comp_sub.gap.json b/pfam_gap_rates/Adap_comp_sub.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..6ff83cac426298c6e781155f698eb70b05e8e0c9
--- /dev/null
+++ b/pfam_gap_rates/Adap_comp_sub.gap.json
@@ -0,0 +1 @@
+{"family": "Adap_comp_sub", "n_seqs": 1796, "length": 386, "gap_rates": [0.5851893095768375, 0.40033407572383073, 0.36469933184855235, 0.3724944320712695, 0.32238307349665923, 0.30456570155902, 0.2900890868596882, 0.2678173719376392, 0.2505567928730512, 0.21993318485523386, 0.1720489977728285, 0.1252783964365256, 0.11358574610244988, 0.10356347438752785, 0.09298440979955457, 0.09187082405345212, 0.09075723830734966, 0.09020044543429843, 0.08964365256124722, 0.09131403118040089, 0.09131403118040089, 0.09075723830734966, 0.09020044543429843, 0.08964365256124722, 0.08853006681514476, 0.08797327394209355, 0.08518930957683742, 0.08129175946547884, 0.07906458797327394, 0.938195991091314, 0.07739420935412027, 0.07850779510022271, 0.07405345211581292, 0.07238307349665925, 0.07071269487750557, 0.07071269487750557, 0.06848552338530067, 0.06848552338530067, 0.06848552338530067, 0.06792873051224944, 0.06737193763919821, 0.06792873051224944, 0.06737193763919821, 0.06737193763919821, 0.0645879732739421, 0.06403118040089087, 0.06403118040089087, 0.06403118040089087, 0.06347438752783964, 0.06347438752783964, 0.062360801781737196, 0.061247216035634745, 0.05902004454342984, 0.05957683741648107, 0.05902004454342984, 0.05846325167037862, 0.05790645879732739, 0.05846325167037862, 0.05790645879732739, 0.05846325167037862, 0.05846325167037862, 0.05902004454342984, 0.05846325167037862, 0.05957683741648107, 0.05902004454342984, 0.4710467706013363, 0.4749443207126949, 0.4933184855233853, 0.6932071269487751, 0.732739420935412, 0.7644766146993318, 0.8079064587973274, 0.8964365256124721, 0.9187082405345212, 0.9315144766146993, 0.9404231625835189, 0.9259465478841871, 0.9070155902004454, 0.8836302895322939, 0.7951002227171492, 0.7416481069042317, 0.717706013363029, 0.5645879732739421, 0.4782850779510022, 0.4732739420935412, 0.46993318485523383, 0.43318485523385303, 0.4693763919821826, 0.4131403118040089, 0.9437639198218263, 0.4437639198218263, 0.39198218262806234, 0.3596881959910913, 0.33964365256124723, 0.19320712694877507, 0.07238307349665925, 0.0645879732739421, 0.061247216035634745, 0.05957683741648107, 0.05957683741648107, 0.05957683741648107, 0.05957683741648107, 0.05902004454342984, 0.05902004454342984, 0.06403118040089087, 0.060133630289532294, 0.060133630289532294, 0.8407572383073497, 0.8190423162583519, 0.060133630289532294, 0.060133630289532294, 0.06792873051224944, 0.9253897550111359, 0.05957683741648107, 0.05902004454342984, 0.05902004454342984, 0.05790645879732739, 0.05790645879732739, 0.05790645879732739, 0.05902004454342984, 0.060133630289532294, 0.05957683741648107, 0.05957683741648107, 0.8379732739420935, 0.839086859688196, 0.8730512249443207, 0.8402004454342984, 0.8385300668151447, 0.8374164810690423, 0.060133630289532294, 0.9125835189309577, 0.060133630289532294, 0.060690423162583516, 0.060690423162583516, 0.060133630289532294, 0.05790645879732739, 0.05679287305122494, 0.05679287305122494, 0.06792873051224944, 0.06792873051224944, 0.8685968819599109, 0.9242761692650334, 0.9348552338530067, 0.9443207126948775, 0.9415367483296214, 0.9337416481069042, 0.8841870824053452, 0.638641425389755, 0.5835189309576837, 0.07238307349665925, 0.06180400890868597, 0.062360801781737196, 0.06180400890868597, 0.06291759465478843, 0.06291759465478843, 0.060690423162583516, 0.07238307349665925, 0.06625835189309577, 0.06347438752783964, 0.06291759465478843, 0.062360801781737196, 0.06291759465478843, 0.06403118040089087, 0.06514476614699331, 0.06625835189309577, 0.8468819599109132, 0.08853006681514476, 0.0801781737193764, 0.08407572383073497, 0.5083518930957683, 0.07850779510022271, 0.07071269487750557, 0.07071269487750557, 0.06570155902004454, 0.0645879732739421, 0.0645879732739421, 0.062360801781737196, 0.06347438752783964, 0.06180400890868597, 0.06180400890868597, 0.1520044543429844, 0.15311804008908686, 0.15924276169265034, 0.18429844097995546, 0.9415367483296214, 0.9426503340757239, 0.9471046770601337, 0.9448775055679287, 0.9420935412026726, 0.9409799554565702, 0.18207126948775057, 0.25278396436525613, 0.22271714922049, 0.06792873051224944, 0.06347438752783964, 0.062360801781737196, 0.062360801781737196, 0.062360801781737196, 0.06291759465478843, 0.062360801781737196, 0.06291759465478843, 0.06180400890868597, 0.062360801781737196, 0.062360801781737196, 0.08184855233853007, 0.08463251670378619, 0.13251670378619154, 0.8875278396436526, 0.9114699331848553, 0.9187082405345212, 0.9248329621380846, 0.9315144766146993, 0.9342984409799554, 0.9365256124721604, 0.9393095768374164, 0.9404231625835189, 0.9432071269487751, 0.9454342984409799, 0.9476614699331849, 0.9476614699331849, 0.9487750556792873, 0.9498886414253898, 0.9493318485523385, 0.9487750556792873, 0.9476614699331849, 0.9465478841870824, 0.9443207126948775, 0.9415367483296214, 0.9398663697104677, 0.9376391982182628, 0.9354120267260579, 0.9326280623608018, 0.9315144766146993, 0.920935412026726, 0.9153674832962138, 0.9103563474387528, 0.871380846325167, 0.09521158129175947, 0.08351893095768374, 0.07683741648106904, 0.07126948775055679, 0.07906458797327394, 0.08129175946547884, 0.8836302895322939, 0.08296213808463251, 0.08073496659242761, 0.07015590200445435, 0.06959910913140312, 0.06792873051224944, 0.9265033407572383, 0.9432071269487751, 0.9393095768374164, 0.9086859688195991, 0.09521158129175947, 0.09409799554565701, 0.06959910913140312, 0.07126948775055679, 0.07071269487750557, 0.07628062360801782, 0.08296213808463251, 0.08630289532293986, 0.07405345211581292, 0.07126948775055679, 0.07126948775055679, 0.07126948775055679, 0.07126948775055679, 0.07071269487750557, 0.07238307349665925, 0.07293986636971046, 0.07349665924276169, 0.9393095768374164, 0.9432071269487751, 0.9459910913140311, 0.9465478841870824, 0.9471046770601337, 0.9482182628062361, 0.9482182628062361, 0.9476614699331849, 0.9465478841870824, 0.9459910913140311, 0.9448775055679287, 0.9415367483296214, 0.9187082405345212, 0.0779510022271715, 0.10356347438752785, 0.10634743875278396, 0.10746102449888642, 0.10857461024498886, 0.11414253897550111, 0.10300668151447662, 0.2856347438752784, 0.2744988864142539, 0.2561247216035635, 0.11024498886414254, 0.9270601336302895, 0.10857461024498886, 0.10579064587973273, 0.10690423162583519, 0.10412026726057906, 0.10356347438752785, 0.10690423162583519, 0.10634743875278396, 0.10746102449888642, 0.1876391982182628, 0.2188195991091314, 0.1631403118040089, 0.1492204899777283, 0.1291759465478842, 0.12861915367483295, 0.13028953229398663, 0.29955456570155903, 0.52728285077951, 0.4593541202672606, 0.44097995545657015, 0.7065701559020044, 0.8535634743875279, 0.8658129175946548, 0.8880846325167038, 0.8953229398663697, 0.9031180400890868, 0.9086859688195991, 0.9125835189309577, 0.9175946547884187, 0.9393095768374164, 0.9459910913140311, 0.9259465478841871, 0.9159242761692651, 0.910913140311804, 0.9047884187082406, 0.9014476614699332, 0.89086859688196, 0.8791759465478842, 0.861358574610245, 0.8045657015590201, 0.10968819599109131, 0.10467706013363029, 0.10412026726057906, 0.10412026726057906, 0.10467706013363029, 0.10523385300668152, 0.10968819599109131, 0.111358574610245, 0.16815144766146994, 0.11804008908685969, 0.12026726057906459, 0.14309576837416482, 0.21770601336302894, 0.12861915367483295, 0.1291759465478842, 0.12583518930957685, 0.13140311804008908, 0.13418708240534521, 0.13752783964365256, 0.14643652561247217, 0.15478841870824053, 0.1564587973273942, 0.1631403118040089, 0.23775055679287305, 0.40478841870824056, 0.8847438752783965, 0.9036748329621381, 0.8947661469933185, 0.7288418708240535, 0.2071269487750557, 0.19933184855233854, 0.19933184855233854, 0.20044543429844097, 0.2032293986636971, 0.21325167037861914, 0.22383073496659242, 0.22884187082405344, 0.23106904231625836, 0.22661469933184855, 0.2455456570155902, 0.25389755011135856, 0.2594654788418708, 0.2795100222717149, 0.2884187082405345, 0.32293986636971045, 0.8880846325167038, 0.31403118040089084, 0.3184855233853007, 0.33964365256124723, 0.3658129175946548, 0.4131403118040089, 0.8223830734966593], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/AfsA.gap.json b/pfam_gap_rates/AfsA.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..7cad3f418280b1d187852bdde0169bc70bf6b6bc
--- /dev/null
+++ b/pfam_gap_rates/AfsA.gap.json
@@ -0,0 +1 @@
+{"family": "AfsA", "n_seqs": 117, "length": 145, "gap_rates": [0.5811965811965812, 0.37606837606837606, 0.24786324786324787, 0.19658119658119658, 0.18803418803418803, 0.18803418803418803, 0.1794871794871795, 0.17094017094017094, 0.1623931623931624, 0.1623931623931624, 0.1623931623931624, 0.1623931623931624, 0.15384615384615385, 0.13675213675213677, 0.1282051282051282, 0.1111111111111111, 0.11965811965811966, 0.1282051282051282, 0.9230769230769231, 0.41025641025641024, 0.26495726495726496, 0.18803418803418803, 0.19658119658119658, 0.1111111111111111, 0.06837606837606838, 0.06837606837606838, 0.05982905982905983, 0.042735042735042736, 0.05128205128205128, 0.042735042735042736, 0.03418803418803419, 0.02564102564102564, 0.008547008547008548, 0.0, 0.0, 0.008547008547008548, 0.09401709401709402, 0.02564102564102564, 0.017094017094017096, 0.017094017094017096, 0.9230769230769231, 0.811965811965812, 0.13675213675213677, 0.02564102564102564, 0.017094017094017096, 0.017094017094017096, 0.008547008547008548, 0.017094017094017096, 0.008547008547008548, 0.008547008547008548, 0.008547008547008548, 0.008547008547008548, 0.008547008547008548, 0.008547008547008548, 0.008547008547008548, 0.017094017094017096, 0.03418803418803419, 0.03418803418803419, 0.03418803418803419, 0.03418803418803419, 0.042735042735042736, 0.02564102564102564, 0.042735042735042736, 0.042735042735042736, 0.042735042735042736, 0.05128205128205128, 0.05128205128205128, 0.05128205128205128, 0.9316239316239316, 0.8803418803418803, 0.23931623931623933, 0.20512820512820512, 0.19658119658119658, 0.19658119658119658, 0.36752136752136755, 0.24786324786324787, 0.23076923076923078, 0.18803418803418803, 0.17094017094017094, 0.1623931623931624, 0.1452991452991453, 0.06837606837606838, 0.06837606837606838, 0.06837606837606838, 0.06837606837606838, 0.06837606837606838, 0.2222222222222222, 0.11965811965811966, 0.09401709401709402, 0.09401709401709402, 0.10256410256410256, 0.15384615384615385, 0.11965811965811966, 0.1111111111111111, 0.09401709401709402, 0.6581196581196581, 0.905982905982906, 0.9401709401709402, 0.6923076923076923, 0.6410256410256411, 0.08547008547008547, 0.08547008547008547, 0.08547008547008547, 0.08547008547008547, 0.10256410256410256, 0.1111111111111111, 0.1111111111111111, 0.1111111111111111, 0.1111111111111111, 0.11965811965811966, 0.11965811965811966, 0.1282051282051282, 0.13675213675213677, 0.15384615384615385, 0.7435897435897436, 0.6581196581196581, 0.42735042735042733, 0.39316239316239315, 0.36752136752136755, 0.3162393162393162, 0.24786324786324787, 0.20512820512820512, 0.20512820512820512, 0.19658119658119658, 0.1794871794871795, 0.1794871794871795, 0.17094017094017094, 0.17094017094017094, 0.1794871794871795, 0.18803418803418803, 0.18803418803418803, 0.18803418803418803, 0.19658119658119658, 0.20512820512820512, 0.20512820512820512, 0.20512820512820512, 0.2222222222222222, 0.23931623931623933, 0.2564102564102564, 0.26495726495726496, 0.3076923076923077, 0.4700854700854701, 0.5641025641025641, 0.7435897435897436, 0.9487179487179487], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Ala_racemase_C.gap.json b/pfam_gap_rates/Ala_racemase_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..983155c48442c2ce6b5c1f84ee5f07e83e971d85
--- /dev/null
+++ b/pfam_gap_rates/Ala_racemase_C.gap.json
@@ -0,0 +1 @@
+{"family": "Ala_racemase_C", "n_seqs": 2200, "length": 137, "gap_rates": [0.26272727272727275, 0.095, 0.04090909090909091, 0.023636363636363636, 0.017727272727272727, 0.014545454545454545, 0.014090909090909091, 0.014090909090909091, 0.012727272727272728, 0.012272727272727272, 0.011818181818181818, 0.011818181818181818, 0.011818181818181818, 0.011363636363636364, 0.011363636363636364, 0.011818181818181818, 0.01090909090909091, 0.01090909090909091, 0.011363636363636364, 0.011363636363636364, 0.01090909090909091, 0.011363636363636364, 0.01090909090909091, 0.010454545454545454, 0.012727272727272728, 0.015909090909090907, 0.00909090909090909, 0.008636363636363636, 0.007727272727272728, 0.008181818181818182, 0.007727272727272728, 0.007272727272727273, 0.005909090909090909, 0.005454545454545455, 0.003181818181818182, 0.0027272727272727275, 0.0027272727272727275, 0.0027272727272727275, 0.0027272727272727275, 0.0027272727272727275, 0.0027272727272727275, 0.0027272727272727275, 0.0027272727272727275, 0.003181818181818182, 0.003181818181818182, 0.004090909090909091, 0.0036363636363636364, 0.005, 0.004090909090909091, 0.007272727272727273, 0.24, 0.945, 0.95, 0.9481818181818182, 0.8490909090909091, 0.1618181818181818, 0.008181818181818182, 0.9222727272727272, 0.8527272727272728, 0.009545454545454546, 0.009545454545454546, 0.00909090909090909, 0.004090909090909091, 0.006363636363636364, 0.005909090909090909, 0.01, 0.008181818181818182, 0.004545454545454545, 0.0036363636363636364, 0.004545454545454545, 0.004545454545454545, 0.005454545454545455, 0.013636363636363636, 0.005909090909090909, 0.006363636363636364, 0.005454545454545455, 0.005, 0.004545454545454545, 0.004545454545454545, 0.005, 0.005, 0.005454545454545455, 0.005909090909090909, 0.006818181818181818, 0.06227272727272727, 0.24272727272727274, 0.15363636363636363, 0.05818181818181818, 0.9063636363636364, 0.860909090909091, 0.03636363636363636, 0.022727272727272728, 0.02, 0.012272727272727272, 0.008636363636363636, 0.011363636363636364, 0.011818181818181818, 0.012727272727272728, 0.01681818181818182, 0.028636363636363637, 0.03772727272727273, 0.8927272727272727, 0.038636363636363635, 0.3759090909090909, 0.44136363636363635, 0.5295454545454545, 0.4213636363636364, 0.06681818181818182, 0.05272727272727273, 0.04318181818181818, 0.03090909090909091, 0.03090909090909091, 0.03272727272727273, 0.03227272727272727, 0.03227272727272727, 0.03363636363636364, 0.03318181818181818, 0.03363636363636364, 0.03363636363636364, 0.034545454545454546, 0.035, 0.035454545454545454, 0.035454545454545454, 0.03590909090909091, 0.03590909090909091, 0.03636363636363636, 0.038181818181818185, 0.038636363636363635, 0.03909090909090909, 0.05090909090909091, 0.04681818181818182, 0.05, 0.056818181818181816, 0.06545454545454546, 0.10954545454545454, 0.15818181818181817, 0.4409090909090909], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Aldolase_II.gap.json b/pfam_gap_rates/Aldolase_II.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..cea5f40835147fa688a0f301f8bb6e85de30edf0
--- /dev/null
+++ b/pfam_gap_rates/Aldolase_II.gap.json
@@ -0,0 +1 @@
+{"family": "Aldolase_II", "n_seqs": 3706, "length": 253, "gap_rates": [0.8548300053966541, 0.3424177010253643, 0.1929303831624393, 0.14624932541824068, 0.12385321100917432, 0.11036157582298975, 0.10010793308148948, 0.09390178089584458, 0.08796546141392336, 0.08364813815434431, 0.08041014570966001, 0.9214786832164058, 0.07609282245008095, 0.07204533189422559, 0.07015650296815974, 0.06853750674581759, 0.06610901241230437, 0.06449001618996222, 0.061252023745277925, 0.05450620615218565, 0.07015650296815974, 0.05126821370750135, 0.05126821370750135, 0.050728548300053966, 0.05018888289260658, 0.0496492174851592, 0.048569886670264434, 0.09686994063680518, 0.9282245008094981, 0.9390178089584458, 0.9303831624392876, 0.9257960064759849, 0.10550458715596331, 0.8613059902860226, 0.9182406907717215, 0.9387479762547221, 0.8936859147328656, 0.6233135456017269, 0.43928764166216944, 0.11548839719373988, 0.05153804641122504, 0.04722072315164598, 0.045871559633027525, 0.04641122504047491, 0.8577981651376146, 0.04506206152185645, 0.04479222881813276, 0.044522396114409064, 0.045871559633027525, 0.0466810577441986, 0.04883971937398813, 0.044252563410685376, 0.044522396114409064, 0.04317323259579061, 0.04317323259579061, 0.041824069077172156, 0.04128440366972477, 0.9481921208850512, 0.9301133297355639, 0.03939557474365893, 0.03858607663248786, 0.03831624392876417, 0.03750674581759309, 0.036427415002698325, 0.03615758229897464, 0.03588774959525094, 0.039665407447382624, 0.07339449541284404, 0.05153804641122504, 0.7374527792768484, 0.061252023745277925, 0.9495412844036697, 0.04722072315164598, 0.04695089044792229, 0.041824069077172156, 0.9336211548839719, 0.9357798165137615, 0.9384781435509983, 0.9417161359956827, 0.9444144630329195, 0.9403669724770642, 0.9384781435509983, 0.9336211548839719, 0.9301133297355639, 0.22315164597949272, 0.23232595790609822, 0.8351322180248246, 0.8750674581759309, 0.8934160820291419, 0.9228278467350243, 0.9241770102536427, 0.9147328656233136, 0.8839719373988127, 0.8580679978413384, 0.8119266055045872, 0.6627091203453859, 0.4511602806260119, 0.39827307069616835, 0.1273610361575823, 0.06475984889368591, 0.08364813815434431, 0.039665407447382624, 0.03750674581759309, 0.7822450080949811, 0.039665407447382624, 0.03615758229897464, 0.03588774959525094, 0.033998920669185105, 0.03184025903939557, 0.031570426335671885, 0.03130059363194819, 0.029951430113329736, 0.029411764705882353, 0.12007555315704263, 0.11467889908256881, 0.12601187263896385, 0.9468429573664328, 0.1802482460874258, 0.1616297895304911, 0.0310307609282245, 0.028602266594711278, 0.027792768483540203, 0.028062601187263895, 0.027522935779816515, 0.027522935779816515, 0.027792768483540203, 0.027253103076092824, 0.027253103076092824, 0.027792768483540203, 0.03372908796546142, 0.03372908796546142, 0.03453858607663249, 0.03507825148407987, 0.035617916891527254, 0.035617916891527254, 0.03588774959525094, 0.2574203993524015, 0.06961683756071235, 0.5180787911494873, 0.8327037236913114, 0.8661629789530491, 0.8783054506206153, 0.9212088505126821, 0.9347004856988667, 0.9106853750674582, 0.8766864543982731, 0.8378305450620616, 0.8270372369131138, 0.6295196977873718, 0.16918510523475444, 0.09660010793308149, 0.15974096060442525, 0.1179168915272531, 0.12871019967620076, 0.12385321100917432, 0.9166216945493794, 0.11332973556395035, 0.07123583378305451, 0.06610901241230437, 0.05666486778197517, 0.05936319481921209, 0.06098219104155424, 0.06556934700485699, 0.4786832164058284, 0.1524554776038856, 0.4870480302212628, 0.36211548839719376, 0.8944954128440367, 0.9263356718834322, 0.9392876416621695, 0.9363194819212088, 0.9069077172153265, 0.8631948192120885, 0.046141392336751214, 0.05126821370750135, 0.03426875337290879, 0.031570426335671885, 0.032379924446842956, 0.08850512682137075, 0.05180787911494873, 0.04641122504047491, 0.03993524015110631, 0.042093901780895844, 0.9341608202914193, 0.8974635725849973, 0.291958985429034, 0.11602806260118727, 0.18753372908796545, 0.06556934700485699, 0.09120345385860766, 0.06475984889368591, 0.749055585536967, 0.8124662709120345, 0.8785752833243389, 0.9087965461413924, 0.9025903939557475, 0.8764166216945494, 0.770912034538586, 0.7245008094981111, 0.12061521856449002, 0.03291958985429034, 0.03264975715056665, 0.031570426335671885, 0.03049109552077712, 0.03076092822450081, 0.03507825148407987, 0.032379924446842956, 0.04128440366972477, 0.7258499730167296, 0.45223961144090663, 0.8086886130599028, 0.8607663248785753, 0.9303831624392876, 0.8990825688073395, 0.8332433890987587, 0.667835941716136, 0.0372369131138694, 0.03588774959525094, 0.030221262817053427, 0.02914193200215866, 0.02914193200215866, 0.02914193200215866, 0.029411764705882353, 0.02887209929843497, 0.02887209929843497, 0.02914193200215866, 0.02914193200215866, 0.029411764705882353, 0.030221262817053427, 0.03076092822450081, 0.03130059363194819, 0.03130059363194819, 0.032379924446842956, 0.033189422558014034, 0.033189422558014034, 0.033189422558014034, 0.03372908796546142, 0.036427415002698325, 0.03993524015110631, 0.04128440366972477, 0.0434430652995143, 0.04695089044792229, 0.05018888289260658, 0.053966540744738264, 0.05828386400431732, 0.06260118726389638, 0.06745817593092283, 0.07231516459794927, 0.07852131678359417, 0.0992984349703184, 0.14813815434430652, 0.29411764705882354, 0.6910415542363735], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Aldose_epim.gap.json b/pfam_gap_rates/Aldose_epim.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b375119bb227634fbd5967a7060f22245332d1f6
--- /dev/null
+++ b/pfam_gap_rates/Aldose_epim.gap.json
@@ -0,0 +1 @@
+{"family": "Aldose_epim", "n_seqs": 3417, "length": 373, "gap_rates": [0.5888206028680129, 0.39010828211881765, 0.33596722270997953, 0.2903131401814457, 0.27187591454492244, 0.25929177641205736, 0.27480245829675154, 0.5378987415861867, 0.2054433713784021, 0.1890547263681592, 0.17354404448346503, 0.1635937957272461, 0.13930348258706468, 0.12613403570383377, 0.11706175007316359, 0.11296458882060287, 0.11120866256950541, 0.10740415569212759, 0.10623353819139596, 0.10506292069066432, 0.1044776119402985, 0.10389230318993269, 0.10301434006438397, 0.10184372256365233, 0.1006731050629207, 0.10008779631255488, 0.09920983318700614, 0.09920983318700614, 0.5288264559555166, 0.43751829089844896, 0.6347673397717296, 0.5730172666081358, 0.31431079894644426, 0.09891717881182324, 0.09277143693298215, 0.09247878255779923, 0.09218612818261633, 0.09160081943225051, 0.0913081650570676, 0.09013754755633596, 0.08896693005560433, 0.09482001755926252, 0.4524436640327773, 0.4647351477904595, 0.3362598770851624, 0.31723734269827336, 0.3128475270705297, 0.30845771144278605, 0.3169446883230904, 0.38659642961662277, 0.797190517998244, 0.922739244951712, 0.46414983904009366, 0.41147205150717003, 0.3579163008486977, 0.10916008194322505, 0.0784313725490196, 0.07462686567164178, 0.07345624817091015, 0.07257828504536143, 0.07374890254609306, 0.07462686567164178, 0.07345624817091015, 0.07345624817091015, 0.07345624817091015, 0.32162715832601696, 0.3488440152180275, 0.36669593210418494, 0.15510681884694177, 0.398595258999122, 0.39596136962247586, 0.3915715539947322, 0.36318407960199006, 0.3386011120866257, 0.10974539069359086, 0.10301434006438397, 0.08047995317529998, 0.08428446005267778, 0.08282118817676325, 0.08574773192859234, 0.09013754755633596, 0.0913081650570676, 0.0913081650570676, 0.09043020193151888, 0.5706760316066726, 0.8486976880304361, 0.8814749780509219, 0.9183494293239683, 0.9353233830845771, 0.9148375768217735, 0.8662569505414106, 0.6549604916593503, 0.09423470880889669, 0.08779631255487269, 0.0813579163008487, 0.07374890254609306, 0.06760316066725197, 0.06467661691542288, 0.06292069066432543, 0.06057945566286216, 0.061164764413227976, 0.061457418788410885, 0.061164764413227976, 0.5645302897278315, 0.5747731928592332, 0.5539947322212467, 0.061457418788410885, 0.061750073163593794, 0.061457418788410885, 0.061750073163593794, 0.0620427275387767, 0.061457418788410885, 0.061750073163593794, 0.06292069066432543, 0.06467661691542288, 0.2642669007901668, 0.6584723441615452, 0.8852794849282997, 0.9192273924495171, 0.9443956687152473, 0.9031314018144572, 0.807140766754463, 0.568920105355575, 0.4237635352648522, 0.11823236757389523, 0.07287093942054433, 0.06760316066725197, 0.0652619256657887, 0.06438396254023998, 0.06350599941469125, 0.06292069066432543, 0.06379865378987416, 0.06379865378987416, 0.6414983904009365, 0.09482001755926252, 0.07257828504536143, 0.11618378694761487, 0.09803921568627451, 0.8928884986830553, 0.12115891132572432, 0.0810652619256658, 0.8165057067603161, 0.9476148668422593, 0.8726953467954346, 0.7582674860989171, 0.07667544629792215, 0.06701785191688615, 0.06321334503950835, 0.0620427275387767, 0.05823822066139889, 0.05794556628621598, 0.056482294410301434, 0.0553116769095698, 0.0553116769095698, 0.0553116769095698, 0.056189640035118525, 0.056482294410301434, 0.056189640035118525, 0.056482294410301434, 0.05794556628621598, 0.06262803628914253, 0.06321334503950835, 0.49078138718173836, 0.9224465905765291, 0.05999414691249634, 0.05560433128475271, 0.05501902253438689, 0.05560433128475271, 0.05472636815920398, 0.05443371378402107, 0.05414105940883816, 0.05414105940883816, 0.053555750658472345, 0.05297044190810653, 0.4302019315188762, 0.9016681299385426, 0.9467369037167106, 0.5323383084577115, 0.06760316066725197, 0.06057945566286216, 0.05823822066139889, 0.05794556628621598, 0.05677494878548434, 0.05238513315774071, 0.0520924787825578, 0.0520924787825578, 0.0520924787825578, 0.05297044190810653, 0.053263096283289436, 0.053555750658472345, 0.05414105940883816, 0.05443371378402107, 0.05765291191103307, 0.056189640035118525, 0.3880597014925373, 0.3778167983611355, 0.5496049165935031, 0.8770851624231782, 0.916300848697688, 0.5996488147497805, 0.44483465027802166, 0.3579163008486977, 0.3418203102136377, 0.0977465613110916, 0.0752121744220076, 0.07433421129645888, 0.07257828504536143, 0.07404155692127597, 0.07609013754755634, 0.0752121744220076, 0.07696810067310507, 0.0784313725490196, 0.9215686274509803, 0.1141352063213345, 0.08721100380450687, 0.08516242317822652, 0.08399180567749488, 0.08516242317822652, 0.08633304067895815, 0.08867427568042142, 0.09189347380743342, 0.9446883230904302, 0.3804506877377817, 0.36932982148083116, 0.35352648522095403, 0.33801580333625986, 0.3617208077260755, 0.34913666959321044, 0.3933274802458297, 0.356745683347966, 0.2955809189347381, 0.14749780509218613, 0.1360842844600527, 0.12584138132865086, 0.1334503950834065, 0.1431079894644425, 0.13023119695639448, 0.13110916008194323, 0.9265437518290899, 0.2712906057945566, 0.22505121451565702, 0.14486391571553994, 0.12876792508047996, 0.12086625695054141, 0.11823236757389523, 0.11559847819724905, 0.11559847819724905, 0.11706175007316359, 0.11969563944980978, 0.1240854550775534, 0.22563652326602282, 0.45829675153643545, 0.5560433128475271, 0.6016973953760608, 0.6763242610477027, 0.7105648229441031, 0.7609013754755634, 0.9083991805677495, 0.7369037167105649, 0.694468832309043, 0.6496927129060579, 0.5779923909862452, 0.5346795434591747, 0.1793971319871232, 0.14047410008779632, 0.12964588820602868, 0.12496341820310214, 0.1240854550775534, 0.12203687445127305, 0.12262218320163887, 0.1237928007023705, 0.1264266900790167, 0.13432835820895522, 0.4141059408838162, 0.5519461515949663, 0.7609013754755634, 0.8943517705589699, 0.9218612818261633, 0.9490781387181738, 0.9347380743342113, 0.9072285630670178, 0.8604038630377524, 0.6242317822651449, 0.4863915715539947, 0.2253438688908399, 0.1691542288557214, 0.13257243195785778, 0.12554872695346794, 0.1331577407082236, 0.12759730757974833, 0.1273046532045654, 0.12847527070529705, 0.12876792508047996, 0.1273046532045654, 0.12584138132865086, 0.13462101258413814, 0.13520632133450394, 0.12788996195493121, 0.1240854550775534, 0.12320749195200469, 0.12320749195200469, 0.1237928007023705, 0.1237928007023705, 0.1237928007023705, 0.12525607257828505, 0.1264266900790167, 0.3090430201931519, 0.12876792508047996, 0.12467076382791922, 0.1237928007023705, 0.12320749195200469, 0.1240854550775534, 0.12525607257828505, 0.1273046532045654, 0.1530582382206614, 0.1565700907228563, 0.15861867134913668, 0.17676324261047702, 0.527070529704419, 0.5776997366110623, 0.5961369622475856, 0.6186713491366695, 0.9186420836991513, 0.9449809774656132, 0.9364940005853087, 0.7857769973661106, 0.6040386303775241, 0.5905765291191103, 0.5662862159789289, 0.35996488147497807, 0.30201931518876207, 0.23822066139888792, 0.20515071700321919, 0.19900497512437812, 0.19285923324553703, 0.1858355282411472, 0.17032484635645304, 0.16505706760316066, 0.1788118232367574, 0.1829089844893181, 0.17149546385718467, 0.17003219198127012, 0.1691542288557214, 0.17061750073163595, 0.17208077260755048, 0.1823236757389523, 0.17968978636230612, 0.18115305823822067, 0.1826163301141352, 0.18407960199004975, 0.19461515949663447, 0.20105355575065847, 0.21041849575651156, 0.23734269827333918, 0.24026924202516828, 0.9013754755633596, 0.40327772900204856, 0.26046239391278897, 0.25870646766169153, 0.26163301141352063, 0.26280362891425224, 0.2630962832894352, 0.2677787532923617, 0.2736318407960199, 0.2800702370500439, 0.286215978928885, 0.29616622768510387, 0.3125548726953468, 0.3456248170910155, 0.3874743927421715, 0.42873865964296165, 0.5071700321919813, 0.7889961954931226], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Allantoicase.gap.json b/pfam_gap_rates/Allantoicase.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f46e69defa55e93498e9ab408dd0e8cab438b96c
--- /dev/null
+++ b/pfam_gap_rates/Allantoicase.gap.json
@@ -0,0 +1 @@
+{"family": "Allantoicase", "n_seqs": 671, "length": 199, "gap_rates": [0.13561847988077497, 0.11177347242921014, 0.09239940387481371, 0.09090909090909091, 0.08941877794336811, 0.08643815201192251, 0.08494783904619971, 0.08345752608047691, 0.08345752608047691, 0.08196721311475409, 0.07898658718330849, 0.07898658718330849, 0.07898658718330849, 0.07898658718330849, 0.08196721311475409, 0.07898658718330849, 0.07749627421758569, 0.07749627421758569, 0.07749627421758569, 0.10283159463487332, 0.09985096870342772, 0.08643815201192251, 0.08494783904619971, 0.08792846497764531, 0.09687034277198212, 0.5529061102831595, 0.555886736214605, 0.5573770491803278, 0.5663189269746647, 0.5752608047690015, 0.5603576751117735, 0.5573770491803278, 0.555886736214605, 0.5529061102831595, 0.5201192250372578, 0.07302533532041729, 0.06408345752608048, 0.05812220566318927, 0.05216095380029806, 0.05067064083457526, 0.04918032786885246, 0.04918032786885246, 0.04918032786885246, 0.046199701937406856, 0.046199701937406856, 0.04769001490312966, 0.04918032786885246, 0.834575260804769, 0.8524590163934426, 0.8718330849478391, 0.9090909090909091, 0.8777943368107303, 0.8643815201192251, 0.8479880774962743, 0.5320417287630402, 0.05365126676602087, 0.16691505216095381, 0.9061102831594635, 0.9120715350223547, 0.9195230998509687, 0.9299552906110283, 0.9150521609538003, 0.9120715350223547, 0.9031296572280179, 0.17436661698956782, 0.05216095380029806, 0.05216095380029806, 0.05216095380029806, 0.05216095380029806, 0.05216095380029806, 0.05067064083457526, 0.05067064083457526, 0.05067064083457526, 0.05067064083457526, 0.05067064083457526, 0.8658718330849479, 0.05067064083457526, 0.04918032786885246, 0.05067064083457526, 0.05067064083457526, 0.05067064083457526, 0.05216095380029806, 0.05216095380029806, 0.05365126676602087, 0.05365126676602087, 0.05216095380029806, 0.05216095380029806, 0.05216095380029806, 0.05216095380029806, 0.05365126676602087, 0.05067064083457526, 0.05067064083457526, 0.04769001490312966, 0.04769001490312966, 0.04769001490312966, 0.04769001490312966, 0.04769001490312966, 0.046199701937406856, 0.046199701937406856, 0.046199701937406856, 0.046199701937406856, 0.04918032786885246, 0.04918032786885246, 0.04918032786885246, 0.04769001490312966, 0.8405365126676602, 0.8837555886736215, 0.8971684053651267, 0.910581222056632, 0.9165424739195231, 0.9225037257824144, 0.9225037257824144, 0.9254843517138599, 0.9388971684053651, 0.9329359165424739, 0.9225037257824144, 0.9225037257824144, 0.9165424739195231, 0.9165424739195231, 0.9001490312965723, 0.8941877794336811, 0.8614008941877794, 0.8286140089418778, 0.2578241430700447, 0.6140089418777943, 0.46348733233979134, 0.4172876304023845, 0.44113263785394935, 0.38450074515648286, 0.3710879284649776, 0.30849478390462, 0.2667660208643815, 0.18628912071535023, 0.16542473919523099, 0.10730253353204174, 0.06408345752608048, 0.05067064083457526, 0.040238450074515646, 0.037257824143070044, 0.037257824143070044, 0.037257824143070044, 0.037257824143070044, 0.037257824143070044, 0.041728763040238454, 0.037257824143070044, 0.038748137108792845, 0.037257824143070044, 0.038748137108792845, 0.038748137108792845, 0.038748137108792845, 0.037257824143070044, 0.038748137108792845, 0.9150521609538003, 0.9225037257824144, 0.9150521609538003, 0.9120715350223547, 0.040238450074515646, 0.040238450074515646, 0.041728763040238454, 0.043219076005961254, 0.046199701937406856, 0.9165424739195231, 0.9314456035767511, 0.9150521609538003, 0.046199701937406856, 0.07600596125186289, 0.09090909090909091, 0.8390461997019374, 0.9284649776453056, 0.7406855439642325, 0.06557377049180328, 0.8718330849478391, 0.6274217585692996, 0.10581222056631892, 0.05067064083457526, 0.9195230998509687, 0.8256333830104322, 0.04918032786885246, 0.04769001490312966, 0.04769001490312966, 0.046199701937406856, 0.046199701937406856, 0.04769001490312966, 0.04769001490312966, 0.04769001490312966, 0.04769001490312966, 0.04769001490312966, 0.04918032786885246, 0.05067064083457526, 0.05663189269746647, 0.05812220566318927, 0.05961251862891207, 0.06110283159463487, 0.06259314456035768, 0.06259314456035768, 0.06557377049180328, 0.06706408345752608, 0.07004470938897168, 0.09687034277198212], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Alpha-amylase_C.gap.json b/pfam_gap_rates/Alpha-amylase_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..535ef042fd3defe70e6c32633869b0323a62d998
--- /dev/null
+++ b/pfam_gap_rates/Alpha-amylase_C.gap.json
@@ -0,0 +1 @@
+{"family": "Alpha-amylase_C", "n_seqs": 2073, "length": 104, "gap_rates": [0.2450554751567776, 0.21032320308731306, 0.20791123974915582, 0.2841292812349252, 0.2450554751567776, 0.18523878437047755, 0.12108055957549445, 0.04003859141341052, 0.020260492040520984, 0.017848528702363725, 0.015436565364206465, 0.013506994693680656, 0.013024602026049204, 0.0120598166907863, 0.0120598166907863, 0.011577424023154847, 0.011577424023154847, 0.011577424023154847, 0.6575012059816691, 0.9179932465026531, 0.46068499758803666, 0.38205499276411, 0.3810902074288471, 0.43174143753014954, 0.24939700916546068, 0.00964785335262904, 0.009165460684997588, 0.008683068017366137, 0.008200675349734683, 0.008200675349734683, 0.008200675349734683, 0.013506994693680656, 0.010612638687891944, 0.008200675349734683, 0.5918958031837916, 0.020742884708152436, 0.012542209358417752, 0.023154848046309694, 0.013989387361312108, 0.00723589001447178, 0.00723589001447178, 0.007718282682103232, 0.006753497346840328, 0.017366136034732273, 0.014954172696575013, 0.00964785335262904, 0.19874577906415822, 0.009165460684997588, 0.007718282682103232, 0.008200675349734683, 0.006271104679208876, 0.007718282682103232, 0.009165460684997588, 0.006753497346840328, 0.006271104679208876, 0.03328509406657019, 0.03280270139893873, 0.03328509406657019, 0.03424987940183309, 0.04438012542209358, 0.0694645441389291, 0.15340086830680175, 0.14327062228654125, 0.0964785335262904, 0.13121080559575493, 0.17703810902074288, 0.6637723106608779, 0.13121080559575493, 0.0945489628557646, 0.07670043415340087, 0.06560540279787747, 0.0612638687891944, 0.05595754944524843, 0.0472744814278823, 0.0472744814278823, 0.04872165943077665, 0.05161601543656536, 0.056439942112879886, 0.05065123010130246, 0.3589001447178003, 0.9392185238784371, 0.8972503617945007, 0.32416787264833574, 0.10902074288470816, 0.08345393150024119, 0.22334780511336227, 0.20067534973468404, 0.1808972503617945, 0.05788712011577424, 0.05885190545103714, 0.05740472744814279, 0.056922334780511334, 0.05981669078630005, 0.06174626145682586, 0.06512301013024602, 0.06608779546550893, 0.06994693680656054, 0.07091172214182344, 0.07187650747708635, 0.0742884708152436, 0.07670043415340087, 0.0844187168355041, 0.13410516160154365, 0.3989387361312108], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Alpha_L_fucos.gap.json b/pfam_gap_rates/Alpha_L_fucos.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f303093382b857980d33406aea7e750011663b0b
--- /dev/null
+++ b/pfam_gap_rates/Alpha_L_fucos.gap.json
@@ -0,0 +1 @@
+{"family": "Alpha_L_fucos", "n_seqs": 1439, "length": 491, "gap_rates": [0.9444058373870744, 0.8908964558721334, 0.8505906879777624, 0.8047255038220987, 0.7678943710910354, 0.7359277275886031, 0.6956219596942321, 0.6580958999305073, 0.6198749131341209, 0.5997220291869354, 0.5858234885337039, 0.5753995830437804, 0.5524669909659485, 0.5392633773453788, 0.5260597637248089, 0.5135510771369006, 0.4996525364836692, 0.4996525364836692, 0.48227936066712995, 0.9478804725503822, 0.43919388464211256, 0.46351633078526755, 0.42807505211952745, 0.3842946490618485, 0.3231410701876303, 0.3182765809589993, 0.34746351633078526, 0.3071577484364142, 0.3036831132731063, 0.30298818624044477, 0.30090340514246006, 0.30090340514246006, 0.3015983321751216, 0.30090340514246006, 0.30090340514246006, 0.30090340514246006, 0.30020847810979845, 0.2953439888811675, 0.29325920778318276, 0.2925642807505212, 0.2897845726198749, 0.2904794996525365, 0.2876997915218902, 0.28353022932592076, 0.28144544822793605, 0.4885337039610841, 0.2828353022932592, 0.7533009034051424, 0.8012508686587908, 0.8193189715079917, 0.8519805420430855, 0.8971507991660875, 0.9464906184850591, 0.9249478804725504, 0.8749131341209173, 0.8339124391938847, 0.8033356497567755, 0.7908269631688672, 0.5719249478804725, 0.27449617790132036, 0.2689367616400278, 0.26476719944405835, 0.2640722724113968, 0.26129256428075054, 0.2828353022932592, 0.28561501042390547, 0.2918693537178596, 0.29881862404447534, 0.3134120917303683, 0.3877692842251564, 0.3766504517025712, 0.8241834607366226, 0.9284225156358582, 0.896455872133426, 0.6587908269631688, 0.6115357887421821, 0.5747046560111189, 0.5545517720639332, 0.532314107018763, 0.5205003474635164, 0.5052119527449618, 0.4996525364836692, 0.4815844336344684, 0.4808895066018068, 0.47810979847116053, 0.8415566365531619, 0.7602501737317582, 0.49409312022237667, 0.47116052814454484, 0.4621264767199444, 0.26685198054204307, 0.26337734537873525, 0.2453092425295344, 0.23210562890896455, 0.9499652536483669, 0.2098679638637943, 0.17581653926337734, 0.11883252258512857, 0.0965948575399583, 0.0945100764419736, 0.09103544127866574, 0.08825573314801946, 0.08617095205003475, 0.08200138985406533, 0.08061153578874218, 0.07991660875608061, 0.0778318276580959, 0.07713690062543432, 0.07644197359277276, 0.0778318276580959, 0.07713690062543432, 0.07713690062543432, 0.07852675469075747, 0.07852675469075747, 0.0778318276580959, 0.07644197359277276, 0.0778318276580959, 0.07644197359277276, 0.07366226546212648, 0.07505211952744961, 0.07505211952744961, 0.07366226546212648, 0.07366226546212648, 0.0729673384294649, 0.07157748436414177, 0.0729673384294649, 0.07227241139680333, 0.07227241139680333, 0.0729673384294649, 0.07227241139680333, 0.07088255733148019, 0.07018763029881862, 0.07157748436414177, 0.07088255733148019, 0.07018763029881862, 0.07088255733148019, 0.07088255733148019, 0.07366226546212648, 0.07157748436414177, 0.07227241139680333, 0.07018763029881862, 0.7970813064628214, 0.06949270326615706, 0.06949270326615706, 0.06879777623349548, 0.06740792216817235, 0.07227241139680333, 0.7706740792216817, 0.9409312022237665, 0.7755385684503128, 0.7602501737317582, 0.17303683113273105, 0.07991660875608061, 0.0847810979847116, 0.7574704656011119, 0.07574704656011119, 0.06879777623349548, 0.06949270326615706, 0.06949270326615706, 0.06810284920083391, 0.06671299513551077, 0.06810284920083391, 0.06810284920083391, 0.06879777623349548, 0.06949270326615706, 0.06879777623349548, 0.06879777623349548, 0.06810284920083391, 0.06810284920083391, 0.9027102154273802, 0.06810284920083391, 0.06810284920083391, 0.06810284920083391, 0.06810284920083391, 0.06810284920083391, 0.06740792216817235, 0.06740792216817235, 0.06810284920083391, 0.06810284920083391, 0.06810284920083391, 0.06810284920083391, 0.06949270326615706, 0.8380820013898541, 0.842946490618485, 0.8498957609451008, 0.8547602501737318, 0.8596247394023627, 0.862404447533009, 0.8686587908269632, 0.886726893676164, 0.9124391938846421, 0.9179986101459346, 0.9235580264072273, 0.9298123697011814, 0.9305072967338429, 0.9437109103544128, 0.9464906184850591, 0.9409312022237665, 0.9298123697011814, 0.9270326615705351, 0.9200833912439194, 0.9173036831132731, 0.8950660180681028, 0.8735232800555942, 0.8658790826963169, 0.862404447533009, 0.8568450312717165, 0.8498957609451008, 0.8436414176511466, 0.8394718554551772, 0.7588603196664351, 0.06879777623349548, 0.1014593467685893, 0.15774843641417652, 0.1299513551077137, 0.10493398193189715, 0.103544127866574, 0.14107018763029883, 0.11535788742182071, 0.1063238359972203, 0.15844336344683807, 0.2828353022932592, 0.29325920778318276, 0.3092425295343989, 0.3412091730368311, 0.3467685892981237, 0.48992355802640725, 0.5052119527449618, 0.38846421125781794, 0.35719249478804727, 0.28561501042390547, 0.09937456567060458, 0.5538568450312717, 0.5712300208478109, 0.6059763724808895, 0.6546212647671994, 0.7046560111188325, 0.7887421820708825, 0.8353022932592078, 0.8630993745656707, 0.876997915218902, 0.9221681723419041, 0.9395413481584434, 0.9332870048644892, 0.8895066018068103, 0.8686587908269632, 0.8505906879777624, 0.8193189715079917, 0.7109103544127866, 0.6810284920083391, 0.635858234885337, 0.5892981236970118, 0.5649756775538568, 0.5441278665740097, 0.0847810979847116, 0.7734537873523281, 0.07227241139680333, 0.07227241139680333, 0.06949270326615706, 0.06671299513551077, 0.0660180681028492, 0.06323835997220292, 0.06323835997220292, 0.06393328700486449, 0.06532314107018763, 0.06393328700486449, 0.06254343293954134, 0.06532314107018763, 0.06462821403752605, 0.06393328700486449, 0.061153578874218205, 0.061153578874218205, 0.06184850590687978, 0.4739402362751911, 0.06184850590687978, 0.06184850590687978, 0.061153578874218205, 0.06323835997220292, 0.06393328700486449, 0.06323835997220292, 0.09103544127866574, 0.07227241139680333, 0.07227241139680333, 0.07435719249478805, 0.07088255733148019, 0.6414176511466296, 0.6851980542043086, 0.7421820708825573, 0.7553856845031272, 0.7797081306462822, 0.8005559416261293, 0.8255733148019458, 0.8992355802640722, 0.9138290479499652, 0.9263377345378735, 0.9332870048644892, 0.940236275191105, 0.9464906184850591, 0.9464906184850591, 0.9423210562890897, 0.9374565670604587, 0.9305072967338429, 0.9235580264072273, 0.906184850590688, 0.8756080611535789, 0.8088950660180682, 0.7887421820708825, 0.7706740792216817, 0.7477414871438499, 0.7282835302293259, 0.6664350243224462, 0.5844336344683808, 0.19041000694927032, 0.21959694232105628, 0.18763029881862406, 0.1626129256428075, 0.16191799861014594, 0.14176511466296038, 0.14176511466296038, 0.1438498957609451, 0.14107018763029883, 0.31758165392633775, 0.3370396108408617, 0.9291174426685198, 0.886726893676164, 0.13342599027102153, 0.1271716469770674, 0.10771369006254343, 0.1014593467685893, 0.09798471160528145, 0.10076441973592773, 0.2585128561501042, 0.10979847116052814, 0.10701876302988186, 0.10979847116052814, 0.7074357192494788, 0.6177901320361362, 0.5246699096594858, 0.10979847116052814, 0.09937456567060458, 0.09937456567060458, 0.09728978457261987, 0.0965948575399583, 0.2522585128561501, 0.15774843641417652, 0.1535788742182071, 0.15496872828353023, 0.15844336344683807, 0.15844336344683807, 0.11605281445448228, 0.31480194579569143, 0.48019457956914524, 0.5837387074357192, 0.7338429464906184, 0.7609451007644198, 0.7866574009728978, 0.817234190410007, 0.8589298123697012, 0.8999305072967339, 0.9200833912439194, 0.935371785962474, 0.9457956914523975, 0.9485753995830438, 0.9416261292564281, 0.9284225156358582, 0.9096594857539958, 0.8929812369701181, 0.8457261987491314, 0.8019457956914524, 0.7804030576789437, 0.7428769979152189, 0.7192494788047255, 0.5441278665740097, 0.414176511466296, 0.2522585128561501, 0.11605281445448228, 0.1556636553161918, 0.15705350938151494, 0.1202223766504517, 0.9471855455177206, 0.12578179291174427, 0.1299513551077137, 0.1320361362056984, 0.13273106323835998, 0.13620569840166782, 0.14176511466296038, 0.14523974982626825, 0.8999305072967339, 0.15774843641417652, 0.17998610145934676, 0.1646977067407922, 0.08756080611535788, 0.703961084086171, 0.7234190410006949, 0.7678943710910354, 0.8116747741487144, 0.8505906879777624, 0.881862404447533, 0.9027102154273802, 0.9145239749826268, 0.9242529534398888, 0.9388464211257818, 0.9464906184850591, 0.9485753995830438, 0.9437109103544128, 0.9305072967338429, 0.920778318276581, 0.906184850590688, 0.8950660180681028, 0.8665740097289785, 0.8186240444753301, 0.8040305767894371, 0.7352328005559416, 0.7095205003474635, 0.7018763029881863, 0.0847810979847116, 0.0847810979847116, 0.08269631688672689, 0.08269631688672689, 0.08269631688672689, 0.08339124391938846, 0.08339124391938846, 0.08200138985406533, 0.08408617095205004, 0.6935371785962474, 0.13134120917303682, 0.07991660875608061, 0.07922168172341904, 0.07991660875608061, 0.07852675469075747, 0.07852675469075747, 0.0778318276580959, 0.07852675469075747, 0.32453092425295343, 0.7116052814454482, 0.5830437804030577, 0.08408617095205004, 0.07922168172341904, 0.07852675469075747, 0.07991660875608061, 0.07922168172341904, 0.07991660875608061, 0.08061153578874218, 0.08061153578874218, 0.07991660875608061, 0.08061153578874218, 0.07713690062543432, 0.07644197359277276, 0.07713690062543432, 0.07713690062543432, 0.07713690062543432, 0.07644197359277276, 0.07644197359277276, 0.07713690062543432, 0.07574704656011119, 0.07644197359277276, 0.07644197359277276, 0.07644197359277276, 0.07574704656011119, 0.07574704656011119, 0.07574704656011119, 0.07644197359277276, 0.07644197359277276, 0.07644197359277276, 0.07644197359277276, 0.07644197359277276, 0.07644197359277276, 0.07713690062543432, 0.07713690062543432, 0.07713690062543432, 0.0778318276580959, 0.07713690062543432, 0.07713690062543432, 0.0778318276580959, 0.07991660875608061, 0.08269631688672689, 0.08895066018068103, 0.08964558721334259, 0.09034051424600417, 0.09520500347463516, 0.10284920083391244, 0.12161223071577484, 0.16122307157748436, 0.1862404447533009, 0.2592077831827658, 0.2738012508686588, 0.2904794996525365, 0.3328700486448923, 0.35232800555941624, 0.38082001389854064, 0.5309242529534399], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Ank_3.gap.json b/pfam_gap_rates/Ank_3.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..4b340e38c6d92f3a4fb0385c7c11a03728f9d847
--- /dev/null
+++ b/pfam_gap_rates/Ank_3.gap.json
@@ -0,0 +1 @@
+{"family": "Ank_3", "n_seqs": 964, "length": 31, "gap_rates": [0.6887966804979253, 0.27593360995850624, 0.1358921161825726, 0.029045643153526972, 0.0031120331950207467, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.001037344398340249, 0.004149377593360996, 0.0, 0.0, 0.0, 0.001037344398340249, 0.002074688796680498, 0.004149377593360996, 0.8392116182572614, 0.07365145228215768, 0.09024896265560166, 0.10580912863070539, 0.14522821576763487, 0.21058091286307054, 0.3817427385892116, 0.7676348547717843], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/AntA.gap.json b/pfam_gap_rates/AntA.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..26e6388fdfabd6e4464e3dcb1d885030409e6008
--- /dev/null
+++ b/pfam_gap_rates/AntA.gap.json
@@ -0,0 +1 @@
+{"family": "AntA", "n_seqs": 138, "length": 88, "gap_rates": [0.15217391304347827, 0.09420289855072464, 0.07246376811594203, 0.07246376811594203, 0.07246376811594203, 0.07246376811594203, 0.07246376811594203, 0.07246376811594203, 0.07246376811594203, 0.07246376811594203, 0.07246376811594203, 0.06521739130434782, 0.9420289855072463, 0.057971014492753624, 0.057971014492753624, 0.050724637681159424, 0.050724637681159424, 0.036231884057971016, 0.036231884057971016, 0.036231884057971016, 0.036231884057971016, 0.34782608695652173, 0.028985507246376812, 0.036231884057971016, 0.021739130434782608, 0.007246376811594203, 0.014492753623188406, 0.07971014492753623, 0.08695652173913043, 0.007246376811594203, 0.007246376811594203, 0.007246376811594203, 0.0, 0.007246376811594203, 0.007246376811594203, 0.0, 0.0, 0.0, 0.0, 0.5072463768115942, 0.7681159420289855, 0.8768115942028986, 0.9130434782608695, 0.927536231884058, 0.9347826086956522, 0.9492753623188406, 0.9492753623188406, 0.9420289855072463, 0.9347826086956522, 0.9202898550724637, 0.8913043478260869, 0.8188405797101449, 0.6304347826086957, 0.4420289855072464, 0.13043478260869565, 0.09420289855072464, 0.07246376811594203, 0.050724637681159424, 0.028985507246376812, 0.036231884057971016, 0.028985507246376812, 0.09420289855072464, 0.8623188405797102, 0.9130434782608695, 0.8405797101449275, 0.057971014492753624, 0.021739130434782608, 0.9492753623188406, 0.036231884057971016, 0.036231884057971016, 0.028985507246376812, 0.028985507246376812, 0.028985507246376812, 0.028985507246376812, 0.028985507246376812, 0.028985507246376812, 0.028985507246376812, 0.028985507246376812, 0.028985507246376812, 0.028985507246376812, 0.036231884057971016, 0.036231884057971016, 0.043478260869565216, 0.043478260869565216, 0.050724637681159424, 0.057971014492753624, 0.13043478260869565, 0.16666666666666666], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/ArAE_1.gap.json b/pfam_gap_rates/ArAE_1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..eb92e63fd7fc29fe119a5a8428c5e125b4f3ef03
--- /dev/null
+++ b/pfam_gap_rates/ArAE_1.gap.json
@@ -0,0 +1 @@
+{"family": "ArAE_1", "n_seqs": 542, "length": 143, "gap_rates": [0.6697416974169742, 0.474169741697417, 0.3284132841328413, 0.3081180811808118, 0.24723247232472326, 0.16051660516605165, 0.11254612546125461, 0.042435424354243544, 0.025830258302583026, 0.01845018450184502, 0.01845018450184502, 0.01845018450184502, 0.014760147601476014, 0.014760147601476014, 0.014760147601476014, 0.014760147601476014, 0.014760147601476014, 0.014760147601476014, 0.016605166051660517, 0.01845018450184502, 0.01845018450184502, 0.01845018450184502, 0.014760147601476014, 0.016605166051660517, 0.01107011070110701, 0.01107011070110701, 0.01107011070110701, 0.09225092250922509, 0.01107011070110701, 0.00922509225092251, 0.00922509225092251, 0.00922509225092251, 0.00922509225092251, 0.00922509225092251, 0.007380073800738007, 0.007380073800738007, 0.007380073800738007, 0.005535055350553505, 0.007380073800738007, 0.007380073800738007, 0.007380073800738007, 0.005535055350553505, 0.0036900369003690036, 0.0036900369003690036, 0.0036900369003690036, 0.0036900369003690036, 0.0036900369003690036, 0.005535055350553505, 0.005535055350553505, 0.005535055350553505, 0.005535055350553505, 0.005535055350553505, 0.005535055350553505, 0.005535055350553505, 0.005535055350553505, 0.005535055350553505, 0.005535055350553505, 0.005535055350553505, 0.005535055350553505, 0.005535055350553505, 0.005535055350553505, 0.005535055350553505, 0.005535055350553505, 0.005535055350553505, 0.007380073800738007, 0.005535055350553505, 0.005535055350553505, 0.005535055350553505, 0.005535055350553505, 0.007380073800738007, 0.007380073800738007, 0.005535055350553505, 0.005535055350553505, 0.005535055350553505, 0.005535055350553505, 0.005535055350553505, 0.005535055350553505, 0.0036900369003690036, 0.005535055350553505, 0.005535055350553505, 0.005535055350553505, 0.005535055350553505, 0.007380073800738007, 0.007380073800738007, 0.00922509225092251, 0.00922509225092251, 0.00922509225092251, 0.00922509225092251, 0.01107011070110701, 0.01107011070110701, 0.01107011070110701, 0.01107011070110701, 0.00922509225092251, 0.00922509225092251, 0.012915129151291513, 0.014760147601476014, 0.922509225092251, 0.012915129151291513, 0.02029520295202952, 0.012915129151291513, 0.02214022140221402, 0.02952029520295203, 0.027675276752767528, 0.02029520295202952, 0.012915129151291513, 0.01107011070110701, 0.00922509225092251, 0.00922509225092251, 0.014760147601476014, 0.01107011070110701, 0.00922509225092251, 0.01107011070110701, 0.00922509225092251, 0.01107011070110701, 0.033210332103321034, 0.00922509225092251, 0.016605166051660517, 0.016605166051660517, 0.012915129151291513, 0.01845018450184502, 0.5867158671586716, 0.027675276752767528, 0.023985239852398525, 0.00922509225092251, 0.00922509225092251, 0.01107011070110701, 0.01107011070110701, 0.01107011070110701, 0.00922509225092251, 0.00922509225092251, 0.00922509225092251, 0.00922509225092251, 0.00922509225092251, 0.00922509225092251, 0.00922509225092251, 0.00922509225092251, 0.01107011070110701, 0.012915129151291513, 0.016605166051660517, 0.02952029520295203, 0.042435424354243544, 0.13099630996309963, 0.4797047970479705], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/ArAE_2.gap.json b/pfam_gap_rates/ArAE_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..bbf446c612a6c892a6987b8f79c5d3f2cc25f88e
--- /dev/null
+++ b/pfam_gap_rates/ArAE_2.gap.json
@@ -0,0 +1 @@
+{"family": "ArAE_2", "n_seqs": 238, "length": 281, "gap_rates": [0.5462184873949579, 0.4957983193277311, 0.31512605042016806, 0.31092436974789917, 0.2857142857142857, 0.23949579831932774, 0.23529411764705882, 0.23109243697478993, 0.2184873949579832, 0.21008403361344538, 0.20588235294117646, 0.20588235294117646, 0.20588235294117646, 0.20168067226890757, 0.20168067226890757, 0.20168067226890757, 0.20168067226890757, 0.20168067226890757, 0.19747899159663865, 0.19747899159663865, 0.19747899159663865, 0.19747899159663865, 0.19747899159663865, 0.19747899159663865, 0.19747899159663865, 0.19747899159663865, 0.19747899159663865, 0.19747899159663865, 0.19747899159663865, 0.19747899159663865, 0.19747899159663865, 0.19747899159663865, 0.19747899159663865, 0.19747899159663865, 0.3277310924369748, 0.3067226890756303, 0.38235294117647056, 0.8067226890756303, 0.8277310924369747, 0.8445378151260504, 0.8739495798319328, 0.907563025210084, 0.9243697478991597, 0.9495798319327731, 0.9327731092436975, 0.9201680672268907, 0.8907563025210085, 0.8529411764705882, 0.8403361344537815, 0.8109243697478992, 0.7983193277310925, 0.2689075630252101, 0.3235294117647059, 0.2815126050420168, 0.2815126050420168, 0.2857142857142857, 0.28991596638655465, 0.2815126050420168, 0.2857142857142857, 0.22268907563025211, 0.6932773109243697, 0.7436974789915967, 0.7647058823529411, 0.8781512605042017, 0.9033613445378151, 0.9243697478991597, 0.9327731092436975, 0.9495798319327731, 0.9453781512605042, 0.9327731092436975, 0.9117647058823529, 0.8907563025210085, 0.7773109243697479, 0.7478991596638656, 0.7226890756302521, 0.680672268907563, 0.4117647058823529, 0.35714285714285715, 0.24789915966386555, 0.17647058823529413, 0.16806722689075632, 0.08823529411764706, 0.07983193277310924, 0.06722689075630252, 0.0546218487394958, 0.046218487394957986, 0.037815126050420166, 0.037815126050420166, 0.029411764705882353, 0.025210084033613446, 0.01680672268907563, 0.01680672268907563, 0.02100840336134454, 0.02100840336134454, 0.012605042016806723, 0.012605042016806723, 0.012605042016806723, 0.012605042016806723, 0.012605042016806723, 0.01680672268907563, 0.012605042016806723, 0.012605042016806723, 0.012605042016806723, 0.012605042016806723, 0.012605042016806723, 0.008403361344537815, 0.1134453781512605, 0.01680672268907563, 0.01680672268907563, 0.008403361344537815, 0.008403361344537815, 0.008403361344537815, 0.012605042016806723, 0.012605042016806723, 0.012605042016806723, 0.01680672268907563, 0.01680672268907563, 0.01680672268907563, 0.01680672268907563, 0.01680672268907563, 0.01680672268907563, 0.01680672268907563, 0.02100840336134454, 0.02100840336134454, 0.01680672268907563, 0.01680672268907563, 0.01680672268907563, 0.02100840336134454, 0.01680672268907563, 0.01680672268907563, 0.025210084033613446, 0.025210084033613446, 0.029411764705882353, 0.029411764705882353, 0.037815126050420166, 0.04201680672268908, 0.04201680672268908, 0.046218487394957986, 0.0546218487394958, 0.058823529411764705, 0.4327731092436975, 0.6932773109243697, 0.13445378151260504, 0.21008403361344538, 0.08823529411764706, 0.08403361344537816, 0.07563025210084033, 0.07563025210084033, 0.07563025210084033, 0.07983193277310924, 0.07563025210084033, 0.07983193277310924, 0.07983193277310924, 0.07983193277310924, 0.08403361344537816, 0.09243697478991597, 0.07563025210084033, 0.08823529411764706, 0.09243697478991597, 0.08403361344537816, 0.09243697478991597, 0.10084033613445378, 0.10504201680672269, 0.09663865546218488, 0.07983193277310924, 0.07983193277310924, 0.07563025210084033, 0.07563025210084033, 0.07142857142857142, 0.07142857142857142, 0.07563025210084033, 0.07563025210084033, 0.07563025210084033, 0.07563025210084033, 0.07563025210084033, 0.07563025210084033, 0.07563025210084033, 0.07563025210084033, 0.07563025210084033, 0.07563025210084033, 0.07563025210084033, 0.07563025210084033, 0.07983193277310924, 0.08823529411764706, 0.08403361344537816, 0.09243697478991597, 0.09243697478991597, 0.3907563025210084, 0.35294117647058826, 0.38235294117647056, 0.28991596638655465, 0.2815126050420168, 0.2605042016806723, 0.27310924369747897, 0.2857142857142857, 0.29831932773109243, 0.2857142857142857, 0.2857142857142857, 0.29831932773109243, 0.29411764705882354, 0.29411764705882354, 0.29411764705882354, 0.29831932773109243, 0.31092436974789917, 0.31512605042016806, 0.3319327731092437, 0.8235294117647058, 0.8403361344537815, 0.8529411764705882, 0.8529411764705882, 0.8697478991596639, 0.8949579831932774, 0.9159663865546218, 0.9243697478991597, 0.9327731092436975, 0.9453781512605042, 0.9495798319327731, 0.9411764705882353, 0.9327731092436975, 0.9243697478991597, 0.907563025210084, 0.8823529411764706, 0.8613445378151261, 0.8529411764705882, 0.8445378151260504, 0.8277310924369747, 0.8151260504201681, 0.6764705882352942, 0.6470588235294118, 0.6176470588235294, 0.6050420168067226, 0.5966386554621849, 0.5840336134453782, 0.5798319327731093, 0.5630252100840336, 0.5504201680672269, 0.4579831932773109, 0.44537815126050423, 0.3697478991596639, 0.36554621848739494, 0.3739495798319328, 0.36554621848739494, 0.35294117647058826, 0.35714285714285715, 0.36554621848739494, 0.36554621848739494, 0.3697478991596639, 0.3697478991596639, 0.37815126050420167, 0.37815126050420167, 0.37815126050420167, 0.37815126050420167, 0.37815126050420167, 0.37815126050420167, 0.38235294117647056, 0.38235294117647056, 0.38235294117647056, 0.38235294117647056, 0.38235294117647056, 0.38235294117647056, 0.38235294117647056, 0.38235294117647056, 0.3865546218487395, 0.3865546218487395, 0.3907563025210084, 0.3907563025210084, 0.3907563025210084, 0.39915966386554624, 0.40336134453781514, 0.40336134453781514, 0.40336134453781514, 0.40336134453781514, 0.4117647058823529, 0.4117647058823529, 0.4117647058823529, 0.4117647058823529, 0.4117647058823529, 0.4117647058823529, 0.5210084033613446, 0.6680672268907563, 0.7184873949579832], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/ArAE_2_N.gap.json b/pfam_gap_rates/ArAE_2_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d86f1979b53d181c7333d47b6014fb3528f5c273
--- /dev/null
+++ b/pfam_gap_rates/ArAE_2_N.gap.json
@@ -0,0 +1 @@
+{"family": "ArAE_2_N", "n_seqs": 296, "length": 549, "gap_rates": [0.9256756756756757, 0.8141891891891891, 0.7702702702702703, 0.7128378378378378, 0.6790540540540541, 0.6790540540540541, 0.7398648648648649, 0.6655405405405406, 0.6452702702702703, 0.6148648648648649, 0.9087837837837838, 0.5912162162162162, 0.5743243243243243, 0.5608108108108109, 0.5371621621621622, 0.527027027027027, 0.49324324324324326, 0.4560810810810811, 0.42567567567567566, 0.4189189189189189, 0.4155405405405405, 0.41216216216216217, 0.41216216216216217, 0.40878378378378377, 0.40878378378378377, 0.40878378378378377, 0.40878378378378377, 0.40878378378378377, 0.40878378378378377, 0.40540540540540543, 0.40540540540540543, 0.40540540540540543, 0.3952702702702703, 0.3918918918918919, 0.3918918918918919, 0.3885135135135135, 0.38175675675675674, 0.38175675675675674, 0.38175675675675674, 0.38175675675675674, 0.38513513513513514, 0.3783783783783784, 0.3783783783783784, 0.375, 0.3716216216216216, 0.3716216216216216, 0.36824324324324326, 0.36824324324324326, 0.36824324324324326, 0.36824324324324326, 0.36824324324324326, 0.36824324324324326, 0.36824324324324326, 0.36824324324324326, 0.36824324324324326, 0.36824324324324326, 0.36824324324324326, 0.36824324324324326, 0.3716216216216216, 0.36824324324324326, 0.36824324324324326, 0.36824324324324326, 0.36824324324324326, 0.36824324324324326, 0.36824324324324326, 0.36824324324324326, 0.36824324324324326, 0.36824324324324326, 0.36824324324324326, 0.36824324324324326, 0.36824324324324326, 0.36486486486486486, 0.36486486486486486, 0.36486486486486486, 0.36486486486486486, 0.36824324324324326, 0.36486486486486486, 0.36486486486486486, 0.36486486486486486, 0.36486486486486486, 0.36486486486486486, 0.36486486486486486, 0.36486486486486486, 0.36824324324324326, 0.36824324324324326, 0.3716216216216216, 0.3716216216216216, 0.375, 0.3783783783783784, 0.38175675675675674, 0.4155405405405405, 0.44932432432432434, 0.4527027027027027, 0.4527027027027027, 0.47297297297297297, 0.4797297297297297, 0.8344594594594594, 0.777027027027027, 0.777027027027027, 0.7837837837837838, 0.7871621621621622, 0.7466216216216216, 0.7533783783783784, 0.75, 0.7533783783783784, 0.75, 0.7567567567567568, 0.7601351351351351, 0.7364864864864865, 0.7331081081081081, 0.7331081081081081, 0.7297297297297297, 0.7263513513513513, 0.8006756756756757, 0.7736486486486487, 0.668918918918919, 0.6587837837837838, 0.6317567567567568, 0.6655405405405406, 0.6013513513513513, 0.5844594594594594, 0.5743243243243243, 0.5574324324324325, 0.5574324324324325, 0.5608108108108109, 0.5574324324324325, 0.5337837837837838, 0.5371621621621622, 0.5371621621621622, 0.5405405405405406, 0.5337837837837838, 0.527027027027027, 0.5236486486486487, 0.48986486486486486, 0.4189189189189189, 0.40878378378378377, 0.40202702702702703, 0.375, 0.35135135135135137, 0.3918918918918919, 0.3344594594594595, 0.2905405405405405, 0.28040540540540543, 0.27364864864864863, 0.2702702702702703, 0.2635135135135135, 0.26013513513513514, 0.26013513513513514, 0.26013513513513514, 0.26013513513513514, 0.26013513513513514, 0.26013513513513514, 0.26013513513513514, 0.26013513513513514, 0.25675675675675674, 0.27364864864864863, 0.26013513513513514, 0.25675675675675674, 0.25675675675675674, 0.25675675675675674, 0.25675675675675674, 0.25675675675675674, 0.2905405405405405, 0.902027027027027, 0.777027027027027, 0.26013513513513514, 0.2668918918918919, 0.26013513513513514, 0.26013513513513514, 0.2668918918918919, 0.2635135135135135, 0.26013513513513514, 0.2635135135135135, 0.2668918918918919, 0.2635135135135135, 0.26013513513513514, 0.2635135135135135, 0.3141891891891892, 0.30067567567567566, 0.30067567567567566, 0.2635135135135135, 0.2533783783783784, 0.26013513513513514, 0.25675675675675674, 0.2668918918918919, 0.25675675675675674, 0.26013513513513514, 0.2635135135135135, 0.26013513513513514, 0.5912162162162162, 0.7533783783783784, 0.27702702702702703, 0.2635135135135135, 0.25675675675675674, 0.25, 0.24662162162162163, 0.25, 0.24662162162162163, 0.23648648648648649, 0.23986486486486486, 0.22972972972972974, 0.23310810810810811, 0.22972972972972974, 0.22635135135135134, 0.22635135135135134, 0.22635135135135134, 0.22635135135135134, 0.22635135135135134, 0.22635135135135134, 0.22635135135135134, 0.22635135135135134, 0.22297297297297297, 0.22297297297297297, 0.22635135135135134, 0.22635135135135134, 0.22972972972972974, 0.22635135135135134, 0.22635135135135134, 0.22635135135135134, 0.22635135135135134, 0.22635135135135134, 0.22635135135135134, 0.22635135135135134, 0.22972972972972974, 0.22972972972972974, 0.22972972972972974, 0.22297297297297297, 0.22297297297297297, 0.22297297297297297, 0.22297297297297297, 0.22297297297297297, 0.22297297297297297, 0.22297297297297297, 0.22297297297297297, 0.22297297297297297, 0.22297297297297297, 0.22297297297297297, 0.22297297297297297, 0.22297297297297297, 0.22297297297297297, 0.22297297297297297, 0.22297297297297297, 0.22297297297297297, 0.22297297297297297, 0.22635135135135134, 0.22972972972972974, 0.22635135135135134, 0.22635135135135134, 0.22635135135135134, 0.22297297297297297, 0.2635135135135135, 0.23648648648648649, 0.22972972972972974, 0.22635135135135134, 0.24662162162162163, 0.24324324324324326, 0.28040540540540543, 0.2905405405405405, 0.3716216216216216, 0.6182432432432432, 0.6824324324324325, 0.7027027027027027, 0.7364864864864865, 0.7466216216216216, 0.7567567567567568, 0.7567567567567568, 0.7736486486486487, 0.793918918918919, 0.8108108108108109, 0.8175675675675675, 0.8378378378378378, 0.847972972972973, 0.8581081081081081, 0.875, 0.9054054054054054, 0.9425675675675675, 0.9493243243243243, 0.9459459459459459, 0.9222972972972973, 0.8851351351351351, 0.8614864864864865, 0.8581081081081081, 0.8378378378378378, 0.8344594594594594, 0.8141891891891891, 0.8040540540540541, 0.7905405405405406, 0.7635135135135135, 0.7567567567567568, 0.75, 0.7398648648648649, 0.7162162162162162, 0.6993243243243243, 0.6351351351351351, 0.5675675675675675, 0.375, 0.5608108108108109, 0.5236486486486487, 0.25675675675675674, 0.24662162162162163, 0.23986486486486486, 0.23310810810810811, 0.23310810810810811, 0.23310810810810811, 0.23310810810810811, 0.23310810810810811, 0.23310810810810811, 0.23648648648648649, 0.23648648648648649, 0.23310810810810811, 0.23310810810810811, 0.23310810810810811, 0.23648648648648649, 0.23648648648648649, 0.23986486486486486, 0.23986486486486486, 0.23986486486486486, 0.23310810810810811, 0.23310810810810811, 0.23648648648648649, 0.23310810810810811, 0.23310810810810811, 0.23310810810810811, 0.23310810810810811, 0.23310810810810811, 0.23310810810810811, 0.22972972972972974, 0.22972972972972974, 0.23310810810810811, 0.23310810810810811, 0.23310810810810811, 0.23310810810810811, 0.22972972972972974, 0.23310810810810811, 0.23310810810810811, 0.23648648648648649, 0.23310810810810811, 0.23310810810810811, 0.23310810810810811, 0.23986486486486486, 0.23986486486486486, 0.23986486486486486, 0.23986486486486486, 0.24324324324324326, 0.25, 0.25675675675675674, 0.2533783783783784, 0.25, 0.25675675675675674, 0.2702702702702703, 0.2702702702702703, 0.2702702702702703, 0.27364864864864863, 0.27702702702702703, 0.28378378378378377, 0.2939189189189189, 0.2905405405405405, 0.2905405405405405, 0.2905405405405405, 0.2905405405405405, 0.2905405405405405, 0.30067567567567566, 0.3141891891891892, 0.40540540540540543, 0.4358108108108108, 0.7837837837837838, 0.7668918918918919, 0.6993243243243243, 0.8243243243243243, 0.8445945945945946, 0.8581081081081081, 0.875, 0.9054054054054054, 0.9222972972972973, 0.9290540540540541, 0.9324324324324325, 0.9324324324324325, 0.9391891891891891, 0.9391891891891891, 0.9493243243243243, 0.9493243243243243, 0.9493243243243243, 0.9493243243243243, 0.9493243243243243, 0.9493243243243243, 0.9493243243243243, 0.9425675675675675, 0.9391891891891891, 0.9324324324324325, 0.9324324324324325, 0.9290540540540541, 0.9256756756756757, 0.918918918918919, 0.8952702702702703, 0.8648648648648649, 0.8513513513513513, 0.8277027027027027, 0.8175675675675675, 0.6587837837837838, 0.6993243243243243, 0.6824324324324325, 0.6081081081081081, 0.6013513513513513, 0.6959459459459459, 0.6891891891891891, 0.6621621621621622, 0.6722972972972973, 0.668918918918919, 0.8716216216216216, 0.9425675675675675, 0.9054054054054054, 0.8412162162162162, 0.7195945945945946, 0.6925675675675675, 0.6722972972972973, 0.6554054054054054, 0.6418918918918919, 0.625, 0.6283783783783784, 0.5844594594594594, 0.9459459459459459, 0.9493243243243243, 0.9391891891891891, 0.5844594594594594, 0.5844594594594594, 0.5844594594594594, 0.581081081081081, 0.5945945945945946, 0.5743243243243243, 0.9155405405405406, 0.8513513513513513, 0.527027027027027, 0.5236486486486487, 0.527027027027027, 0.5236486486486487, 0.527027027027027, 0.5304054054054054, 0.5337837837837838, 0.5337837837837838, 0.5371621621621622, 0.5405405405405406, 0.5371621621621622, 0.543918918918919, 0.5472972972972973, 0.5506756756756757, 0.5540540540540541, 0.5641891891891891, 0.7331081081081081, 0.7702702702702703, 0.9324324324324325, 0.9425675675675675, 0.8952702702702703, 0.6148648648648649, 0.597972972972973, 0.5844594594594594, 0.5743243243243243, 0.5608108108108109, 0.5608108108108109, 0.5675675675675675, 0.5641891891891891, 0.5641891891891891, 0.5641891891891891, 0.5608108108108109, 0.5675675675675675, 0.5743243243243243, 0.5709459459459459, 0.5675675675675675, 0.5777027027027027, 0.581081081081081, 0.581081081081081, 0.581081081081081, 0.5777027027027027, 0.581081081081081, 0.581081081081081, 0.5844594594594594, 0.5844594594594594, 0.5844594594594594, 0.5844594594594594, 0.5844594594594594, 0.5844594594594594, 0.5844594594594594, 0.5878378378378378, 0.5878378378378378, 0.5878378378378378, 0.5878378378378378, 0.5912162162162162, 0.5912162162162162, 0.5912162162162162, 0.5945945945945946, 0.597972972972973, 0.6047297297297297, 0.6047297297297297, 0.6114864864864865, 0.6182432432432432, 0.6283783783783784, 0.6452702702702703, 0.652027027027027, 0.6655405405405406, 0.6621621621621622, 0.7533783783783784, 0.6858108108108109, 0.6891891891891891, 0.831081081081081, 0.8344594594594594, 0.7972972972972973, 0.7702702702702703, 0.7466216216216216, 0.7432432432432432, 0.7364864864864865, 0.7195945945945946, 0.722972972972973, 0.7364864864864865, 0.7668918918918919, 0.7432432432432432, 0.7466216216216216, 0.7398648648648649, 0.7635135135135135, 0.7533783783783784, 0.7398648648648649, 0.7331081081081081, 0.7297297297297297, 0.7195945945945946, 0.7195945945945946, 0.7094594594594594, 0.706081081081081, 0.706081081081081, 0.706081081081081, 0.706081081081081, 0.706081081081081, 0.722972972972973, 0.7297297297297297, 0.7297297297297297, 0.7331081081081081, 0.7364864864864865, 0.7432432432432432, 0.7432432432432432, 0.7364864864864865, 0.7567567567567568, 0.7466216216216216, 0.7601351351351351, 0.7702702702702703, 0.7736486486486487, 0.7871621621621622, 0.7972972972972973, 0.8074324324324325, 0.8412162162162162, 0.8952702702702703, 0.9222972972972973, 0.9459459459459459], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/AraC_N.gap.json b/pfam_gap_rates/AraC_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..fbb2b04f110c36ecee871744b8fe11a37d12f405
--- /dev/null
+++ b/pfam_gap_rates/AraC_N.gap.json
@@ -0,0 +1 @@
+{"family": "AraC_N", "n_seqs": 523, "length": 169, "gap_rates": [0.745697896749522, 0.28489483747609945, 0.2390057361376673, 0.11089866156787763, 0.10133843212237094, 0.09560229445506692, 0.08795411089866156, 0.08221797323135756, 0.07839388145315487, 0.07839388145315487, 0.08795411089866156, 0.08030592734225621, 0.08030592734225621, 0.07074569789674952, 0.07074569789674952, 0.8489483747609943, 0.06883365200764818, 0.06500956022944551, 0.06309751434034416, 0.06309751434034416, 0.05353728489483748, 0.0497131931166348, 0.04780114722753346, 0.03824091778202677, 0.032504780114722756, 0.02676864244741874, 0.02676864244741874, 0.02676864244741874, 0.0248565965583174, 0.0248565965583174, 0.022944550669216062, 0.022944550669216062, 0.022944550669216062, 0.022944550669216062, 0.022944550669216062, 0.022944550669216062, 0.022944550669216062, 0.021032504780114723, 0.021032504780114723, 0.021032504780114723, 0.021032504780114723, 0.8891013384321224, 0.022944550669216062, 0.022944550669216062, 0.022944550669216062, 0.022944550669216062, 0.022944550669216062, 0.022944550669216062, 0.022944550669216062, 0.022944550669216062, 0.021032504780114723, 0.021032504780114723, 0.019120458891013385, 0.017208413001912046, 0.015296367112810707, 0.015296367112810707, 0.017208413001912046, 0.017208413001912046, 0.017208413001912046, 0.017208413001912046, 0.017208413001912046, 0.019120458891013385, 0.019120458891013385, 0.019120458891013385, 0.2084130019120459, 0.04206500956022945, 0.04206500956022945, 0.05162523900573614, 0.04780114722753346, 0.03441682600382409, 0.032504780114722756, 0.0248565965583174, 0.022944550669216062, 0.017208413001912046, 0.017208413001912046, 0.017208413001912046, 0.017208413001912046, 0.017208413001912046, 0.017208413001912046, 0.017208413001912046, 0.019120458891013385, 0.019120458891013385, 0.019120458891013385, 0.017208413001912046, 0.019120458891013385, 0.019120458891013385, 0.019120458891013385, 0.019120458891013385, 0.019120458891013385, 0.37858508604206503, 0.6806883365200764, 0.9024856596558317, 0.8049713193116634, 0.5908221797323135, 0.3632887189292543, 0.019120458891013385, 0.5219885277246654, 0.5105162523900574, 0.03824091778202677, 0.2045889101338432, 0.4435946462715105, 0.8126195028680688, 0.8891013384321224, 0.5793499043977055, 0.2944550669216061, 0.14722753346080306, 0.032504780114722756, 0.14531548757170173, 0.032504780114722756, 0.8546845124282982, 0.7284894837476099, 0.030592734225621414, 0.028680688336520075, 0.0248565965583174, 0.022944550669216062, 0.0248565965583174, 0.0248565965583174, 0.022944550669216062, 0.0248565965583174, 0.02676864244741874, 0.0248565965583174, 0.022944550669216062, 0.01338432122370937, 0.9464627151051626, 0.9464627151051626, 0.9464627151051626, 0.9464627151051626, 0.01338432122370937, 0.01338432122370937, 0.01338432122370937, 0.01338432122370937, 0.01338432122370937, 0.01338432122370937, 0.01338432122370937, 0.01338432122370937, 0.01338432122370937, 0.01338432122370937, 0.015296367112810707, 0.017208413001912046, 0.017208413001912046, 0.858508604206501, 0.015296367112810707, 0.015296367112810707, 0.015296367112810707, 0.022944550669216062, 0.019120458891013385, 0.017208413001912046, 0.019120458891013385, 0.019120458891013385, 0.019120458891013385, 0.019120458891013385, 0.019120458891013385, 0.019120458891013385, 0.019120458891013385, 0.021032504780114723, 0.021032504780114723, 0.021032504780114723, 0.021032504780114723, 0.021032504780114723, 0.021032504780114723, 0.022944550669216062, 0.0248565965583174, 0.0248565965583174, 0.0248565965583174, 0.036328871892925434, 0.03824091778202677, 0.05353728489483748, 0.13001912045889102, 0.3231357552581262], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Arylesterase.gap.json b/pfam_gap_rates/Arylesterase.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b91d36791068670ac252cadb098b037d7a3f0305
--- /dev/null
+++ b/pfam_gap_rates/Arylesterase.gap.json
@@ -0,0 +1 @@
+{"family": "Arylesterase", "n_seqs": 132, "length": 89, "gap_rates": [0.3409090909090909, 0.16666666666666666, 0.14393939393939395, 0.14393939393939395, 0.13636363636363635, 0.12121212121212122, 0.06818181818181818, 0.045454545454545456, 0.03787878787878788, 0.022727272727272728, 0.022727272727272728, 0.022727272727272728, 0.022727272727272728, 0.022727272727272728, 0.022727272727272728, 0.022727272727272728, 0.022727272727272728, 0.022727272727272728, 0.022727272727272728, 0.03787878787878788, 0.030303030303030304, 0.03787878787878788, 0.03787878787878788, 0.05303030303030303, 0.045454545454545456, 0.030303030303030304, 0.030303030303030304, 0.022727272727272728, 0.015151515151515152, 0.015151515151515152, 0.007575757575757576, 0.022727272727272728, 0.030303030303030304, 0.015151515151515152, 0.022727272727272728, 0.007575757575757576, 0.015151515151515152, 0.015151515151515152, 0.007575757575757576, 0.022727272727272728, 0.045454545454545456, 0.045454545454545456, 0.946969696969697, 0.946969696969697, 0.05303030303030303, 0.03787878787878788, 0.05303030303030303, 0.9318181818181818, 0.03787878787878788, 0.05303030303030303, 0.06818181818181818, 0.06060606060606061, 0.06818181818181818, 0.07575757575757576, 0.07575757575757576, 0.08333333333333333, 0.06818181818181818, 0.06060606060606061, 0.06060606060606061, 0.06818181818181818, 0.06060606060606061, 0.06060606060606061, 0.06818181818181818, 0.07575757575757576, 0.10606060606060606, 0.12878787878787878, 0.11363636363636363, 0.11363636363636363, 0.10606060606060606, 0.09848484848484848, 0.09090909090909091, 0.09090909090909091, 0.09090909090909091, 0.09848484848484848, 0.09848484848484848, 0.09848484848484848, 0.11363636363636363, 0.14393939393939395, 0.12878787878787878, 0.14393939393939395, 0.15151515151515152, 0.17424242424242425, 0.19696969696969696, 0.19696969696969696, 0.23484848484848486, 0.2878787878787879, 0.4318181818181818, 0.5757575757575758, 0.7348484848484849], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Asp_decarbox.gap.json b/pfam_gap_rates/Asp_decarbox.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e683a1e19c8b7c18b60224d81d0d21f5eaf60079
--- /dev/null
+++ b/pfam_gap_rates/Asp_decarbox.gap.json
@@ -0,0 +1 @@
+{"family": "Asp_decarbox", "n_seqs": 1018, "length": 114, "gap_rates": [0.1512770137524558, 0.13457760314341846, 0.055992141453831044, 0.05304518664047151, 0.015717092337917484, 0.012770137524557957, 0.011787819253438114, 0.010805500982318271, 0.010805500982318271, 0.010805500982318271, 0.010805500982318271, 0.010805500982318271, 0.010805500982318271, 0.010805500982318271, 0.010805500982318271, 0.007858546168958742, 0.007858546168958742, 0.007858546168958742, 0.007858546168958742, 0.007858546168958742, 0.007858546168958742, 0.007858546168958742, 0.0068762278978389, 0.0068762278978389, 0.0068762278978389, 0.0068762278978389, 0.0068762278978389, 0.0068762278978389, 0.0068762278978389, 0.0068762278978389, 0.0068762278978389, 0.0068762278978389, 0.005893909626719057, 0.005893909626719057, 0.005893909626719057, 0.004911591355599214, 0.004911591355599214, 0.004911591355599214, 0.003929273084479371, 0.0029469548133595285, 0.0029469548133595285, 0.0029469548133595285, 0.003929273084479371, 0.003929273084479371, 0.003929273084479371, 0.003929273084479371, 0.003929273084479371, 0.003929273084479371, 0.003929273084479371, 0.003929273084479371, 0.003929273084479371, 0.003929273084479371, 0.003929273084479371, 0.003929273084479371, 0.003929273084479371, 0.003929273084479371, 0.004911591355599214, 0.004911591355599214, 0.004911591355599214, 0.004911591355599214, 0.004911591355599214, 0.003929273084479371, 0.02848722986247544, 0.029469548133595286, 0.02455795677799607, 0.01768172888015717, 0.004911591355599214, 0.004911591355599214, 0.004911591355599214, 0.004911591355599214, 0.005893909626719057, 0.005893909626719057, 0.005893909626719057, 0.004911591355599214, 0.004911591355599214, 0.005893909626719057, 0.005893909626719057, 0.005893909626719057, 0.005893909626719057, 0.004911591355599214, 0.005893909626719057, 0.0068762278978389, 0.0068762278978389, 0.0068762278978389, 0.0068762278978389, 0.0068762278978389, 0.0068762278978389, 0.0068762278978389, 0.007858546168958742, 0.007858546168958742, 0.007858546168958742, 0.007858546168958742, 0.007858546168958742, 0.007858546168958742, 0.007858546168958742, 0.026522593320235755, 0.0275049115913556, 0.036345776031434185, 0.03732809430255403, 0.01768172888015717, 0.015717092337917484, 0.010805500982318271, 0.010805500982318271, 0.010805500982318271, 0.011787819253438114, 0.011787819253438114, 0.0137524557956778, 0.01669941060903733, 0.018664047151277015, 0.022593320235756387, 0.03143418467583497, 0.047151277013752456, 0.09528487229862476, 0.2544204322200393], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Atx10homo_assoc.gap.json b/pfam_gap_rates/Atx10homo_assoc.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ae51e323f0544015e7885e0359dcd0e25ba154b7
--- /dev/null
+++ b/pfam_gap_rates/Atx10homo_assoc.gap.json
@@ -0,0 +1 @@
+{"family": "Atx10homo_assoc", "n_seqs": 271, "length": 104, "gap_rates": [0.43911439114391143, 0.25461254612546125, 0.23985239852398524, 0.2177121771217712, 0.2066420664206642, 0.2066420664206642, 0.2029520295202952, 0.2029520295202952, 0.2029520295202952, 0.2029520295202952, 0.2029520295202952, 0.1992619926199262, 0.17712177121771217, 0.17343173431734318, 0.1033210332103321, 0.055350553505535055, 0.05904059040590406, 0.04797047970479705, 0.04797047970479705, 0.04797047970479705, 0.04797047970479705, 0.04428044280442804, 0.04428044280442804, 0.04428044280442804, 0.04428044280442804, 0.04797047970479705, 0.04059040590405904, 0.03690036900369004, 0.940959409594096, 0.03690036900369004, 0.03690036900369004, 0.03690036900369004, 0.03690036900369004, 0.03690036900369004, 0.033210332103321034, 0.033210332103321034, 0.033210332103321034, 0.033210332103321034, 0.033210332103321034, 0.033210332103321034, 0.033210332103321034, 0.033210332103321034, 0.025830258302583026, 0.02214022140221402, 0.01845018450184502, 0.01107011070110701, 0.025830258302583026, 0.01845018450184502, 0.01845018450184502, 0.01845018450184502, 0.01845018450184502, 0.01845018450184502, 0.01845018450184502, 0.01845018450184502, 0.01845018450184502, 0.01845018450184502, 0.01845018450184502, 0.02214022140221402, 0.02214022140221402, 0.02214022140221402, 0.025830258302583026, 0.02214022140221402, 0.02214022140221402, 0.02214022140221402, 0.02214022140221402, 0.02214022140221402, 0.02214022140221402, 0.02214022140221402, 0.025830258302583026, 0.025830258302583026, 0.033210332103321034, 0.06642066420664207, 0.1070110701107011, 0.14022140221402213, 0.15129151291512916, 0.1881918819188192, 0.8081180811808119, 0.2177121771217712, 0.948339483394834, 0.9298892988929889, 0.22509225092250923, 0.24354243542435425, 0.2730627306273063, 0.2767527675276753, 0.28044280442804426, 0.2915129151291513, 0.31365313653136534, 0.33210332103321033, 0.3505535055350554, 0.36531365313653136, 0.36900369003690037, 0.3800738007380074, 0.3874538745387454, 0.4022140221402214, 0.42066420664206644, 0.5387453874538746, 0.4317343173431734, 0.8154981549815498, 0.43911439114391143, 0.4981549815498155, 0.5350553505535055, 0.5461254612546126, 0.5793357933579336, 0.9114391143911439], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Auxin_resp.gap.json b/pfam_gap_rates/Auxin_resp.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..7153dba3e8cb17e8d52a22bcd5a7937c8712a3c7
--- /dev/null
+++ b/pfam_gap_rates/Auxin_resp.gap.json
@@ -0,0 +1 @@
+{"family": "Auxin_resp", "n_seqs": 685, "length": 85, "gap_rates": [0.16496350364963502, 0.0905109489051095, 0.08467153284671533, 0.07445255474452554, 0.061313868613138686, 0.059854014598540145, 0.058394160583941604, 0.058394160583941604, 0.05693430656934306, 0.052554744525547446, 0.051094890510948905, 0.04525547445255475, 0.04525547445255475, 0.043795620437956206, 0.043795620437956206, 0.043795620437956206, 0.043795620437956206, 0.0364963503649635, 0.03795620437956204, 0.10510948905109489, 0.10656934306569343, 0.029197080291970802, 0.029197080291970802, 0.029197080291970802, 0.029197080291970802, 0.029197080291970802, 0.029197080291970802, 0.027737226277372264, 0.029197080291970802, 0.027737226277372264, 0.026277372262773723, 0.027737226277372264, 0.026277372262773723, 0.027737226277372264, 0.024817518248175182, 0.02335766423357664, 0.02335766423357664, 0.7197080291970803, 0.021897810218978103, 0.021897810218978103, 0.021897810218978103, 0.021897810218978103, 0.021897810218978103, 0.016058394160583942, 0.016058394160583942, 0.016058394160583942, 0.017518248175182483, 0.013138686131386862, 0.016058394160583942, 0.014598540145985401, 0.01167883211678832, 0.013138686131386862, 0.017518248175182483, 0.0364963503649635, 0.03795620437956204, 0.0364963503649635, 0.032116788321167884, 0.032116788321167884, 0.020437956204379562, 0.043795620437956206, 0.7839416058394161, 0.010218978102189781, 0.010218978102189781, 0.010218978102189781, 0.010218978102189781, 0.010218978102189781, 0.01167883211678832, 0.01167883211678832, 0.01167883211678832, 0.01167883211678832, 0.13576642335766423, 0.043795620437956206, 0.040875912408759124, 0.10072992700729927, 0.04671532846715328, 0.03941605839416058, 0.030656934306569343, 0.030656934306569343, 0.030656934306569343, 0.026277372262773723, 0.026277372262773723, 0.032116788321167884, 0.0364963503649635, 0.04817518248175182, 0.22773722627737225], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/AzlD.gap.json b/pfam_gap_rates/AzlD.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..40dcc941e304d265ed5dd693cd4240e6d79b44a5
--- /dev/null
+++ b/pfam_gap_rates/AzlD.gap.json
@@ -0,0 +1 @@
+{"family": "AzlD", "n_seqs": 1297, "length": 101, "gap_rates": [0.6168080185042406, 0.14417887432536622, 0.07016191210485737, 0.040863531225905934, 0.03238242097147263, 0.027756360832690823, 0.025443330763299923, 0.017733230531996914, 0.017733230531996914, 0.016962220508866616, 0.016191210485736313, 0.016191210485736313, 0.015420200462606014, 0.015420200462606014, 0.013878180416345412, 0.013878180416345412, 0.013878180416345412, 0.013107170393215111, 0.013107170393215111, 0.013107170393215111, 0.01233616037008481, 0.01156515034695451, 0.01079414032382421, 0.01079414032382421, 0.018504240555127217, 0.8272937548188126, 0.016962220508866616, 0.010023130300693909, 0.047802621434078645, 0.013878180416345412, 0.01156515034695451, 0.01156515034695451, 0.01079414032382421, 0.007710100231303007, 0.006168080185042405, 0.006168080185042405, 0.006168080185042405, 0.005397070161912105, 0.005397070161912105, 0.004626060138781804, 0.004626060138781804, 0.004626060138781804, 0.0038550501156515036, 0.0038550501156515036, 0.0015420200462606013, 0.0015420200462606013, 0.0015420200462606013, 0.0015420200462606013, 0.0015420200462606013, 0.0015420200462606013, 0.0015420200462606013, 0.0015420200462606013, 0.0015420200462606013, 0.0015420200462606013, 0.16345412490362374, 0.016962220508866616, 0.13646877409406322, 0.1087124132613724, 0.117964533538936, 0.3346183500385505, 0.28064764841942946, 0.38936006168080184, 0.3646877409406322, 0.3469545104086353, 0.9460292983808789, 0.007710100231303007, 0.006168080185042405, 0.006168080185042405, 0.002313030069390902, 0.002313030069390902, 0.0030840400925212026, 0.0030840400925212026, 0.0030840400925212026, 0.0030840400925212026, 0.0030840400925212026, 0.0030840400925212026, 0.0038550501156515036, 0.0038550501156515036, 0.0038550501156515036, 0.0038550501156515036, 0.0038550501156515036, 0.0038550501156515036, 0.0038550501156515036, 0.004626060138781804, 0.04934464148033924, 0.004626060138781804, 0.005397070161912105, 0.004626060138781804, 0.006168080185042405, 0.008481110254433308, 0.010023130300693909, 0.01156515034695451, 0.01233616037008481, 0.013107170393215111, 0.013107170393215111, 0.013878180416345412, 0.018504240555127217, 0.028527370855821126, 0.06861989205859677, 0.2174248265227448, 0.6700077101002313], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/B12-binding.gap.json b/pfam_gap_rates/B12-binding.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..fe8a0ddc5a00f04a352b91fe973da4e13699f1ed
--- /dev/null
+++ b/pfam_gap_rates/B12-binding.gap.json
@@ -0,0 +1 @@
+{"family": "B12-binding", "n_seqs": 5000, "length": 126, "gap_rates": [0.4488, 0.357, 0.3372, 0.318, 0.2978, 0.2688, 0.2476, 0.2226, 0.197, 0.1648, 0.122, 0.1008, 0.0836, 0.0776, 0.0726, 0.07, 0.068, 0.0614, 0.0602, 0.0588, 0.0574, 0.0568, 0.0558, 0.0552, 0.055, 0.137, 0.0634, 0.0562, 0.0534, 0.0532, 0.059, 0.0516, 0.0496, 0.054, 0.0554, 0.0548, 0.0544, 0.0888, 0.0816, 0.8054, 0.9486, 0.8678, 0.7886, 0.0528, 0.0376, 0.033, 0.0308, 0.0272, 0.0426, 0.0334, 0.0294, 0.0254, 0.021, 0.0202, 0.011, 0.0048, 0.004, 0.0038, 0.004, 0.0036, 0.0056, 0.0054, 0.2774, 0.0084, 0.0056, 0.0038, 0.0042, 0.0048, 0.0056, 0.0044, 0.0046, 0.0042, 0.0038, 0.0038, 0.0046, 0.004, 0.004, 0.8164, 0.625, 0.0048, 0.0106, 0.0096, 0.0102, 0.0986, 0.068, 0.0446, 0.046, 0.0056, 0.0054, 0.0054, 0.0054, 0.0058, 0.0066, 0.0316, 0.0368, 0.142, 0.1436, 0.0958, 0.1072, 0.1204, 0.145, 0.1604, 0.4902, 0.4088, 0.4324, 0.427, 0.6968, 0.8256, 0.238, 0.232, 0.523, 0.2436, 0.263, 0.4148, 0.4052, 0.4178, 0.3666, 0.3476, 0.3556, 0.3708, 0.4196, 0.4534, 0.5106, 0.5552, 0.6206, 0.6964], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/B3.gap.json b/pfam_gap_rates/B3.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c2c2620164106b41182df273758382df7540b45e
--- /dev/null
+++ b/pfam_gap_rates/B3.gap.json
@@ -0,0 +1 @@
+{"family": "B3", "n_seqs": 2670, "length": 113, "gap_rates": [0.4707865168539326, 0.40262172284644193, 0.35243445692883896, 0.32209737827715357, 0.3063670411985019, 0.34681647940074906, 0.32322097378277154, 0.2700374531835206, 0.2524344569288389, 0.23333333333333334, 0.2108614232209738, 0.1895131086142322, 0.18202247191011237, 0.18239700374531836, 0.16367041198501872, 0.099625468164794, 0.07902621722846442, 0.06629213483146068, 0.06254681647940075, 0.06104868913857678, 0.05955056179775281, 0.05692883895131086, 0.05955056179775281, 0.11310861423220973, 0.060674157303370786, 0.0550561797752809, 0.6228464419475656, 0.6846441947565544, 0.8359550561797753, 0.946067415730337, 0.7224719101123596, 0.6329588014981273, 0.5835205992509364, 0.31310861423220976, 0.2966292134831461, 0.21235955056179776, 0.1441947565543071, 0.35580524344569286, 0.35730337078651686, 0.12322097378277154, 0.2602996254681648, 0.2149812734082397, 0.04868913857677903, 0.025842696629213482, 0.022097378277153558, 0.038202247191011236, 0.02659176029962547, 0.025842696629213482, 0.9288389513108615, 0.04119850187265917, 0.017977528089887642, 0.014232209737827715, 0.01610486891385768, 0.011235955056179775, 0.010486891385767791, 0.010486891385767791, 0.009363295880149813, 0.008988764044943821, 0.008239700374531835, 0.36179775280898874, 0.36254681647940074, 0.8977528089887641, 0.8715355805243445, 0.03295880149812734, 0.03445692883895131, 0.020224719101123594, 0.029213483146067417, 0.018352059925093634, 0.015730337078651686, 0.949438202247191, 0.9161048689138577, 0.10149812734082397, 0.08352059925093633, 0.008614232209737827, 0.00599250936329588, 0.08801498127340825, 0.010112359550561797, 0.007865168539325843, 0.007116104868913857, 0.004119850187265918, 0.0044943820224719105, 0.0048689138576779025, 0.0048689138576779025, 0.0056179775280898875, 0.0052434456928838954, 0.0056179775280898875, 0.00599250936329588, 0.007116104868913857, 0.007865168539325843, 0.009737827715355805, 0.010112359550561797, 0.010486891385767791, 0.012359550561797753, 0.013857677902621723, 0.015355805243445693, 0.016853932584269662, 0.1400749063670412, 0.27827715355805244, 0.20299625468164795, 0.19737827715355805, 0.849438202247191, 0.13632958801498127, 0.11910112359550562, 0.13295880149812733, 0.3857677902621723, 0.3846441947565543, 0.17265917602996256, 0.1940074906367041, 0.23745318352059924, 0.27677902621722844, 0.32397003745318353, 0.39325842696629215, 0.5973782771535581], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/BAT2_N.gap.json b/pfam_gap_rates/BAT2_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c6a0ae0609988dcbcf490f1e6171a2966c490d21
--- /dev/null
+++ b/pfam_gap_rates/BAT2_N.gap.json
@@ -0,0 +1 @@
+{"family": "BAT2_N", "n_seqs": 116, "length": 220, "gap_rates": [0.49137931034482757, 0.4827586206896552, 0.47413793103448276, 0.45689655172413796, 0.4396551724137931, 0.43103448275862066, 0.43103448275862066, 0.4051724137931034, 0.3879310344827586, 0.3879310344827586, 0.45689655172413796, 0.39655172413793105, 0.3706896551724138, 0.29310344827586204, 0.29310344827586204, 0.43103448275862066, 0.3017241379310345, 0.29310344827586204, 0.33620689655172414, 0.3275862068965517, 0.28448275862068967, 0.28448275862068967, 0.28448275862068967, 0.28448275862068967, 0.29310344827586204, 0.28448275862068967, 0.28448275862068967, 0.2672413793103448, 0.8793103448275862, 0.8793103448275862, 0.8793103448275862, 0.25862068965517243, 0.25862068965517243, 0.25862068965517243, 0.25862068965517243, 0.25862068965517243, 0.25862068965517243, 0.7931034482758621, 0.7586206896551724, 0.2413793103448276, 0.23275862068965517, 0.9396551724137931, 0.19827586206896552, 0.20689655172413793, 0.20689655172413793, 0.16379310344827586, 0.12931034482758622, 0.12931034482758622, 0.1206896551724138, 0.1206896551724138, 0.10344827586206896, 0.10344827586206896, 0.10344827586206896, 0.10344827586206896, 0.09482758620689655, 0.09482758620689655, 0.09482758620689655, 0.9310344827586207, 0.08620689655172414, 0.08620689655172414, 0.10344827586206896, 0.09482758620689655, 0.19827586206896552, 0.3879310344827586, 0.15517241379310345, 0.0, 0.43103448275862066, 0.008620689655172414, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.02586206896551724, 0.017241379310344827, 0.017241379310344827, 0.017241379310344827, 0.034482758620689655, 0.02586206896551724, 0.05172413793103448, 0.05172413793103448, 0.0603448275862069, 0.05172413793103448, 0.034482758620689655, 0.02586206896551724, 0.05172413793103448, 0.034482758620689655, 0.034482758620689655, 0.034482758620689655, 0.034482758620689655, 0.04310344827586207, 0.034482758620689655, 0.034482758620689655, 0.034482758620689655, 0.05172413793103448, 0.05172413793103448, 0.07758620689655173, 0.06896551724137931, 0.0603448275862069, 0.06896551724137931, 0.10344827586206896, 0.22413793103448276, 0.22413793103448276, 0.21551724137931033, 0.1896551724137931, 0.9051724137931034, 0.9396551724137931, 0.9310344827586207, 0.896551724137931, 0.1724137931034483, 0.14655172413793102, 0.15517241379310345, 0.13793103448275862, 0.13793103448275862, 0.14655172413793102, 0.1724137931034483, 0.22413793103448276, 0.20689655172413793, 0.31896551724137934, 0.19827586206896552, 0.14655172413793102, 0.19827586206896552, 0.23275862068965517, 0.43103448275862066, 0.33620689655172414, 0.5862068965517241, 0.6120689655172413, 0.8706896551724138, 0.8879310344827587, 0.9137931034482759, 0.9482758620689655, 0.9310344827586207, 0.896551724137931, 0.8793103448275862, 0.853448275862069, 0.603448275862069, 0.5689655172413793, 0.29310344827586204, 0.3448275862068966, 0.7844827586206896, 0.3103448275862069, 0.29310344827586204, 0.27586206896551724, 0.25862068965517243, 0.2672413793103448, 0.2672413793103448, 0.2672413793103448, 0.23275862068965517, 0.25, 0.9224137931034483, 0.29310344827586204, 0.3706896551724138, 0.35344827586206895, 0.31896551724137934, 0.3017241379310345, 0.5172413793103449, 0.4827586206896552, 0.47413793103448276, 0.4482758620689655, 0.45689655172413796, 0.45689655172413796, 0.25, 0.25862068965517243, 0.25862068965517243, 0.2672413793103448, 0.28448275862068967, 0.5948275862068966, 0.5689655172413793, 0.3879310344827586, 0.3706896551724138, 0.3620689655172414, 0.3275862068965517, 0.3103448275862069, 0.3275862068965517, 0.35344827586206895, 0.35344827586206895, 0.35344827586206895, 0.3620689655172414, 0.6810344827586207, 0.49137931034482757, 0.4827586206896552, 0.49137931034482757, 0.4482758620689655, 0.3879310344827586, 0.3793103448275862, 0.39655172413793105, 0.4051724137931034, 0.39655172413793105, 0.8879310344827587, 0.9137931034482759, 0.8706896551724138, 0.43103448275862066, 0.43103448275862066, 0.43103448275862066, 0.43103448275862066, 0.4396551724137931, 0.45689655172413796, 0.46551724137931033, 0.46551724137931033, 0.46551724137931033, 0.47413793103448276, 0.4827586206896552, 0.47413793103448276, 0.49137931034482757, 0.49137931034482757, 0.5086206896551724, 0.5344827586206896, 0.5689655172413793, 0.6206896551724138, 0.6206896551724138, 0.6293103448275862, 0.6293103448275862, 0.6551724137931034, 0.6724137931034483, 0.7155172413793104, 0.8620689655172413], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/BBE.gap.json b/pfam_gap_rates/BBE.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f596940f18210f1c86190417d0f6009e7a966420
--- /dev/null
+++ b/pfam_gap_rates/BBE.gap.json
@@ -0,0 +1 @@
+{"family": "BBE", "n_seqs": 2127, "length": 62, "gap_rates": [0.385049365303244, 0.11424541607898449, 0.10625293841090738, 0.09732016925246827, 0.09167842031029619, 0.08932769158439116, 0.08885754583921016, 0.08603667136812412, 0.08415608838740009, 0.08180535966149506, 0.07757404795486601, 0.7536436295251528, 0.7606958157028679, 0.768218147625764, 0.7870239774330042, 0.7987776210625294, 0.8834038551951104, 0.926657263751763, 0.8110014104372355, 0.7893747061589093, 0.7766807710390221, 0.76633756464504, 0.7583450869769629, 0.7465914433474377, 0.688763516690174, 0.608838740009403, 0.925716972261401, 0.17442407146215327, 0.16361071932299012, 0.04466384579219558, 0.02914903620122238, 0.020216267042783263, 0.015514809590973202, 0.009402914903620122, 0.009402914903620122, 0.8542548189938881, 0.006582040432534086, 0.005171603196991067, 0.0023507287259050304, 0.0023507287259050304, 0.0014104372355430183, 0.0018805829807240243, 0.0018805829807240243, 0.0023507287259050304, 0.0018805829807240243, 0.0023507287259050304, 0.0028208744710860366, 0.004701457451810061, 0.006582040432534086, 0.007052186177715092, 0.007522331922896097, 0.011283497884344146, 0.02914903620122238, 0.052656323460272686, 0.1006111894687353, 0.1231781852374236, 0.2016925246826516, 0.2623413258110014, 0.304184297132111, 0.33756464503996236, 0.381758345086977, 0.610249177244946], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/BPL_N.gap.json b/pfam_gap_rates/BPL_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..2c6539e2a108b85efd05477a8beaadcace2ae637
--- /dev/null
+++ b/pfam_gap_rates/BPL_N.gap.json
@@ -0,0 +1 @@
+{"family": "BPL_N", "n_seqs": 282, "length": 413, "gap_rates": [0.6453900709219859, 0.5390070921985816, 0.4219858156028369, 0.36879432624113473, 0.3333333333333333, 0.32978723404255317, 0.32269503546099293, 0.3191489361702128, 0.31560283687943264, 0.30851063829787234, 0.3049645390070922, 0.30141843971631205, 0.30141843971631205, 0.3120567375886525, 0.30851063829787234, 0.30851063829787234, 0.30851063829787234, 0.30851063829787234, 0.30851063829787234, 0.2907801418439716, 0.2872340425531915, 0.2907801418439716, 0.2872340425531915, 0.30141843971631205, 0.3120567375886525, 0.3191489361702128, 0.30141843971631205, 0.30141843971631205, 0.3546099290780142, 0.2978723404255319, 0.2765957446808511, 0.2695035460992908, 0.26595744680851063, 0.26595744680851063, 0.2695035460992908, 0.26595744680851063, 0.2624113475177305, 0.26595744680851063, 0.2624113475177305, 0.25886524822695034, 0.25886524822695034, 0.26595744680851063, 0.25886524822695034, 0.2553191489361702, 0.26595744680851063, 0.2907801418439716, 0.26595744680851063, 0.2553191489361702, 0.23049645390070922, 0.2198581560283688, 0.18439716312056736, 0.13829787234042554, 0.1276595744680851, 0.1276595744680851, 0.11347517730496454, 0.11702127659574468, 0.12056737588652482, 0.12411347517730496, 0.12411347517730496, 0.14893617021276595, 0.13829787234042554, 0.14184397163120568, 0.14893617021276595, 0.14184397163120568, 0.1276595744680851, 0.1276595744680851, 0.14184397163120568, 0.13829787234042554, 0.2198581560283688, 0.13829787234042554, 0.13120567375886524, 0.13120567375886524, 0.11347517730496454, 0.11347517730496454, 0.11347517730496454, 0.11347517730496454, 0.11347517730496454, 0.11347517730496454, 0.11347517730496454, 0.11347517730496454, 0.11347517730496454, 0.11702127659574468, 0.11347517730496454, 0.11702127659574468, 0.12056737588652482, 0.12056737588652482, 0.12056737588652482, 0.12411347517730496, 0.13120567375886524, 0.14184397163120568, 0.1453900709219858, 0.1453900709219858, 0.1773049645390071, 0.18085106382978725, 0.19148936170212766, 0.20921985815602837, 0.23404255319148937, 0.26595744680851063, 0.2872340425531915, 0.2907801418439716, 0.2907801418439716, 0.30141843971631205, 0.3120567375886525, 0.30851063829787234, 0.599290780141844, 0.35815602836879434, 0.3546099290780142, 0.35106382978723405, 0.35106382978723405, 0.3475177304964539, 0.3475177304964539, 0.3475177304964539, 0.3617021276595745, 0.35106382978723405, 0.35106382978723405, 0.3546099290780142, 0.3617021276595745, 0.3546099290780142, 0.3617021276595745, 0.35815602836879434, 0.3546099290780142, 0.3546099290780142, 0.35815602836879434, 0.3617021276595745, 0.35815602836879434, 0.3546099290780142, 0.35815602836879434, 0.35815602836879434, 0.35815602836879434, 0.9468085106382979, 0.36879432624113473, 0.3900709219858156, 0.37943262411347517, 0.37943262411347517, 0.36879432624113473, 0.36879432624113473, 0.3829787234042553, 0.36524822695035464, 0.35815602836879434, 0.35106382978723405, 0.35106382978723405, 0.35106382978723405, 0.3546099290780142, 0.3475177304964539, 0.35106382978723405, 0.35106382978723405, 0.35106382978723405, 0.5531914893617021, 0.6347517730496454, 0.6347517730496454, 0.5921985815602837, 0.5851063829787234, 0.5957446808510638, 0.8262411347517731, 0.5886524822695035, 0.5886524822695035, 0.46808510638297873, 0.8971631205673759, 0.3723404255319149, 0.3617021276595745, 0.35815602836879434, 0.3546099290780142, 0.3546099290780142, 0.35106382978723405, 0.3475177304964539, 0.3475177304964539, 0.3475177304964539, 0.3475177304964539, 0.34397163120567376, 0.3475177304964539, 0.34397163120567376, 0.34397163120567376, 0.3475177304964539, 0.3475177304964539, 0.34397163120567376, 0.3546099290780142, 0.3546099290780142, 0.35815602836879434, 0.36879432624113473, 0.3475177304964539, 0.3404255319148936, 0.6028368794326241, 0.9432624113475178, 0.7021276595744681, 0.3546099290780142, 0.3404255319148936, 0.32978723404255317, 0.3262411347517731, 0.3262411347517731, 0.3262411347517731, 0.3262411347517731, 0.3262411347517731, 0.3262411347517731, 0.3546099290780142, 0.6063829787234043, 0.6028368794326241, 0.5815602836879432, 0.5780141843971631, 0.5780141843971631, 0.5390070921985816, 0.524822695035461, 0.925531914893617, 0.5780141843971631, 0.9432624113475178, 0.9468085106382979, 0.9397163120567376, 0.4148936170212766, 0.5177304964539007, 0.2978723404255319, 0.2978723404255319, 0.2978723404255319, 0.29432624113475175, 0.2907801418439716, 0.2907801418439716, 0.2907801418439716, 0.2907801418439716, 0.2907801418439716, 0.29432624113475175, 0.2907801418439716, 0.2907801418439716, 0.2907801418439716, 0.2907801418439716, 0.2907801418439716, 0.2907801418439716, 0.29432624113475175, 0.29432624113475175, 0.2978723404255319, 0.2978723404255319, 0.2978723404255319, 0.2978723404255319, 0.30141843971631205, 0.3049645390070922, 0.375886524822695, 0.38652482269503546, 0.38652482269503546, 0.4219858156028369, 0.4397163120567376, 0.4574468085106383, 0.7872340425531915, 0.9113475177304965, 0.5390070921985816, 0.46808510638297873, 0.44680851063829785, 0.450354609929078, 0.4432624113475177, 0.41843971631205673, 0.41843971631205673, 0.43617021276595747, 0.4397163120567376, 0.4326241134751773, 0.42907801418439717, 0.42907801418439717, 0.42907801418439717, 0.4219858156028369, 0.4148936170212766, 0.4148936170212766, 0.4148936170212766, 0.4148936170212766, 0.41134751773049644, 0.41134751773049644, 0.4078014184397163, 0.40425531914893614, 0.40425531914893614, 0.4078014184397163, 0.4078014184397163, 0.4078014184397163, 0.4078014184397163, 0.4148936170212766, 0.4219858156028369, 0.43617021276595747, 0.450354609929078, 0.4716312056737589, 0.475177304964539, 0.48226950354609927, 0.4858156028368794, 0.5, 0.7340425531914894, 0.599290780141844, 0.599290780141844, 0.7375886524822695, 0.6595744680851063, 0.5106382978723404, 0.5141843971631206, 0.5141843971631206, 0.5106382978723404, 0.5106382978723404, 0.5141843971631206, 0.5212765957446809, 0.5141843971631206, 0.5141843971631206, 0.5141843971631206, 0.5141843971631206, 0.5141843971631206, 0.5141843971631206, 0.5141843971631206, 0.5141843971631206, 0.5141843971631206, 0.5141843971631206, 0.5177304964539007, 0.8900709219858156, 0.5425531914893617, 0.5319148936170213, 0.524822695035461, 0.5177304964539007, 0.5177304964539007, 0.5212765957446809, 0.5177304964539007, 0.5177304964539007, 0.5212765957446809, 0.524822695035461, 0.7375886524822695, 0.723404255319149, 0.6028368794326241, 0.5921985815602837, 0.5921985815602837, 0.7198581560283688, 0.6843971631205674, 0.6595744680851063, 0.5957446808510638, 0.5602836879432624, 0.549645390070922, 0.5390070921985816, 0.5390070921985816, 0.5390070921985816, 0.5425531914893617, 0.5425531914893617, 0.5425531914893617, 0.5425531914893617, 0.5425531914893617, 0.5425531914893617, 0.5425531914893617, 0.5425531914893617, 0.5460992907801419, 0.5531914893617021, 0.5567375886524822, 0.5567375886524822, 0.776595744680851, 0.776595744680851, 0.7836879432624113, 0.8049645390070922, 0.8297872340425532, 0.8475177304964538, 0.8687943262411347, 0.8900709219858156, 0.9042553191489362, 0.9219858156028369, 0.9326241134751773, 0.9184397163120568, 0.9042553191489362, 0.8794326241134752, 0.851063829787234, 0.8439716312056738, 0.8191489361702128, 0.7907801418439716, 0.7801418439716312, 0.776595744680851, 0.776595744680851, 0.5815602836879432, 0.624113475177305, 0.6170212765957447, 0.6276595744680851, 0.6170212765957447, 0.624113475177305, 0.6205673758865248, 0.6418439716312057, 0.6382978723404256, 0.624113475177305, 0.6276595744680851, 0.624113475177305, 0.6382978723404256, 0.5886524822695035, 0.8794326241134752, 0.9326241134751773, 0.900709219858156, 0.8546099290780141, 0.5957446808510638, 0.5921985815602837, 0.574468085106383, 0.574468085106383, 0.5709219858156028, 0.5709219858156028, 0.5709219858156028, 0.5709219858156028, 0.5709219858156028, 0.5709219858156028, 0.5709219858156028, 0.7943262411347518, 0.6028368794326241, 0.5780141843971631, 0.5780141843971631, 0.5780141843971631, 0.9219858156028369, 0.6702127659574468, 0.5886524822695035, 0.574468085106383, 0.5780141843971631, 0.574468085106383, 0.5780141843971631, 0.5780141843971631, 0.5780141843971631, 0.5709219858156028, 0.5709219858156028, 0.5815602836879432, 0.5709219858156028, 0.5709219858156028, 0.5709219858156028, 0.5709219858156028, 0.5709219858156028, 0.5709219858156028, 0.5709219858156028, 0.5709219858156028, 0.5851063829787234, 0.6099290780141844], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/BSP.gap.json b/pfam_gap_rates/BSP.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..0b7abd4dbb1e629384b1898f5d22083d9d1c4732
--- /dev/null
+++ b/pfam_gap_rates/BSP.gap.json
@@ -0,0 +1 @@
+{"family": "BSP", "n_seqs": 290, "length": 249, "gap_rates": [0.7206896551724138, 0.5413793103448276, 0.4689655172413793, 0.4413793103448276, 0.39655172413793105, 0.3724137931034483, 0.33448275862068966, 0.296551724137931, 0.28620689655172415, 0.7068965517241379, 0.6758620689655173, 0.27241379310344827, 0.2689655172413793, 0.2689655172413793, 0.2689655172413793, 0.2655172413793103, 0.2655172413793103, 0.2620689655172414, 0.25862068965517243, 0.25517241379310346, 0.2517241379310345, 0.25517241379310346, 0.25517241379310346, 0.25517241379310346, 0.6172413793103448, 0.9275862068965517, 0.6068965517241379, 0.4586206896551724, 0.2413793103448276, 0.23448275862068965, 0.23103448275862068, 0.22758620689655173, 0.21724137931034482, 0.21724137931034482, 0.21724137931034482, 0.21379310344827587, 0.2103448275862069, 0.20689655172413793, 0.20689655172413793, 0.20689655172413793, 0.2, 0.19655172413793104, 0.19655172413793104, 0.19655172413793104, 0.19655172413793104, 0.19655172413793104, 0.19655172413793104, 0.2103448275862069, 0.906896551724138, 0.5793103448275863, 0.21379310344827587, 0.21379310344827587, 0.2, 0.22413793103448276, 0.8241379310344827, 0.896551724137931, 0.9344827586206896, 0.9448275862068966, 0.9413793103448276, 0.9206896551724137, 0.8310344827586207, 0.8172413793103448, 0.6241379310344828, 0.1793103448275862, 0.16896551724137931, 0.16551724137931034, 0.15517241379310345, 0.15517241379310345, 0.15172413793103448, 0.1482758620689655, 0.1482758620689655, 0.9379310344827586, 0.14482758620689656, 0.13793103448275862, 0.13448275862068965, 0.1310344827586207, 0.12413793103448276, 0.12413793103448276, 0.12758620689655173, 0.12758620689655173, 0.1310344827586207, 0.12758620689655173, 0.12758620689655173, 0.12758620689655173, 0.12758620689655173, 0.7655172413793103, 0.7827586206896552, 0.7379310344827587, 0.5517241379310345, 0.5448275862068965, 0.5310344827586206, 0.5241379310344828, 0.1310344827586207, 0.1310344827586207, 0.12758620689655173, 0.12758620689655173, 0.12758620689655173, 0.13448275862068965, 0.13448275862068965, 0.13448275862068965, 0.13448275862068965, 0.1310344827586207, 0.1413793103448276, 0.1413793103448276, 0.15517241379310345, 0.17586206896551723, 0.5620689655172414, 0.6862068965517242, 0.8827586206896552, 0.29310344827586204, 0.2689655172413793, 0.23793103448275862, 0.20689655172413793, 0.8896551724137931, 0.9482758620689655, 0.8862068965517241, 0.19310344827586207, 0.15517241379310345, 0.13793103448275862, 0.08620689655172414, 0.08275862068965517, 0.08275862068965517, 0.08275862068965517, 0.08275862068965517, 0.08275862068965517, 0.08620689655172414, 0.07586206896551724, 0.07586206896551724, 0.07586206896551724, 0.07241379310344828, 0.07241379310344828, 0.07586206896551724, 0.08620689655172414, 0.07241379310344828, 0.07931034482758621, 0.8448275862068966, 0.8758620689655172, 0.8896551724137931, 0.9448275862068966, 0.896551724137931, 0.8793103448275862, 0.8724137931034482, 0.8310344827586207, 0.07931034482758621, 0.08275862068965517, 0.9310344827586207, 0.1, 0.09655172413793103, 0.0896551724137931, 0.07931034482758621, 0.07586206896551724, 0.07586206896551724, 0.06896551724137931, 0.06896551724137931, 0.06206896551724138, 0.06206896551724138, 0.05862068965517241, 0.06206896551724138, 0.06551724137931035, 0.07241379310344828, 0.08620689655172414, 0.0896551724137931, 0.09310344827586207, 0.1103448275862069, 0.09655172413793103, 0.0896551724137931, 0.09310344827586207, 0.1, 0.09655172413793103, 0.1, 0.09310344827586207, 0.1, 0.09655172413793103, 0.15862068965517243, 0.10689655172413794, 0.10689655172413794, 0.11379310344827587, 0.7862068965517242, 0.8793103448275862, 0.9241379310344827, 0.9448275862068966, 0.9448275862068966, 0.9379310344827586, 0.9103448275862069, 0.8689655172413793, 0.7586206896551724, 0.27241379310344827, 0.15517241379310345, 0.1103448275862069, 0.10344827586206896, 0.1, 0.1103448275862069, 0.1103448275862069, 0.10344827586206896, 0.10344827586206896, 0.10689655172413794, 0.1, 0.10344827586206896, 0.1, 0.09655172413793103, 0.09655172413793103, 0.09655172413793103, 0.1, 0.1, 0.1, 0.5103448275862069, 0.10344827586206896, 0.10344827586206896, 0.10344827586206896, 0.1, 0.1, 0.1, 0.10689655172413794, 0.1103448275862069, 0.11379310344827587, 0.1103448275862069, 0.1103448275862069, 0.1103448275862069, 0.10689655172413794, 0.5379310344827586, 0.10689655172413794, 0.1103448275862069, 0.11379310344827587, 0.1103448275862069, 0.9448275862068966, 0.8896551724137931, 0.7172413793103448, 0.13793103448275862, 0.11379310344827587, 0.11379310344827587, 0.11379310344827587, 0.11379310344827587, 0.11724137931034483, 0.1206896551724138, 0.12413793103448276, 0.12758620689655173, 0.13448275862068965, 0.1413793103448276, 0.1413793103448276, 0.9344827586206896, 0.9310344827586207, 0.15517241379310345, 0.15862068965517243, 0.15862068965517243, 0.16206896551724137, 0.16551724137931034, 0.17586206896551723, 0.2, 0.2413793103448276], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/BTAD.gap.json b/pfam_gap_rates/BTAD.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f28f6bedf59d22f3c5c06852fb680bd48c6dc8a0
--- /dev/null
+++ b/pfam_gap_rates/BTAD.gap.json
@@ -0,0 +1 @@
+{"family": "BTAD", "n_seqs": 1744, "length": 152, "gap_rates": [0.411697247706422, 0.3084862385321101, 0.30504587155963303, 0.30275229357798167, 0.2981651376146789, 0.2958715596330275, 0.2952981651376147, 0.2952981651376147, 0.29357798165137616, 0.3669724770642202, 0.3623853211009174, 0.35607798165137616, 0.3205275229357798, 0.31020642201834864, 0.3044724770642202, 0.30103211009174313, 0.30275229357798167, 0.30561926605504586, 0.39105504587155965, 0.4065366972477064, 0.30905963302752293, 0.2694954128440367, 0.2213302752293578, 0.20470183486238533, 0.19094036697247707, 0.17488532110091742, 0.1628440366972477, 0.15825688073394495, 0.13761467889908258, 0.125, 0.11754587155963303, 0.10722477064220183, 0.09690366972477064, 0.0860091743119266, 0.08142201834862385, 0.08142201834862385, 0.07511467889908256, 0.06708715596330275, 0.06307339449541284, 0.06135321100917431, 0.05963302752293578, 0.058486238532110095, 0.05561926605504587, 0.11295871559633028, 0.06708715596330275, 0.05561926605504587, 0.8658256880733946, 0.8893348623853211, 0.9157110091743119, 0.8927752293577982, 0.8836009174311926, 0.8451834862385321, 0.31823394495412843, 0.0676605504587156, 0.06307339449541284, 0.040711009174311925, 0.034403669724770644, 0.029243119266055047, 0.027522935779816515, 0.026376146788990827, 0.025802752293577983, 0.024655963302752295, 0.024655963302752295, 0.02408256880733945, 0.02408256880733945, 0.02522935779816514, 0.023509174311926607, 0.02236238532110092, 0.02121559633027523, 0.02121559633027523, 0.020642201834862386, 0.0194954128440367, 0.0194954128440367, 0.0194954128440367, 0.020642201834862386, 0.0194954128440367, 0.05103211009174312, 0.03956422018348624, 0.0338302752293578, 0.02408256880733945, 0.021788990825688075, 0.022935779816513763, 0.0194954128440367, 0.02236238532110092, 0.02236238532110092, 0.01834862385321101, 0.018922018348623854, 0.016055045871559634, 0.016055045871559634, 0.014334862385321102, 0.011467889908256881, 0.012041284403669725, 0.011467889908256881, 0.010894495412844037, 0.010321100917431193, 0.011467889908256881, 0.01261467889908257, 0.012041284403669725, 0.011467889908256881, 0.01261467889908257, 0.013761467889908258, 0.014334862385321102, 0.014908256880733946, 0.017775229357798166, 0.016628440366972478, 0.016628440366972478, 0.013761467889908258, 0.020068807339449542, 0.014908256880733946, 0.013761467889908258, 0.01548165137614679, 0.017201834862385322, 0.017201834862385322, 0.01834862385321101, 0.018922018348623854, 0.018922018348623854, 0.0194954128440367, 0.02121559633027523, 0.024655963302752295, 0.025802752293577983, 0.02694954128440367, 0.029243119266055047, 0.029243119266055047, 0.030389908256880736, 0.0338302752293578, 0.0338302752293578, 0.03555045871559633, 0.03727064220183486, 0.046444954128440366, 0.04873853211009174, 0.05389908256880734, 0.05791284403669725, 0.06192660550458716, 0.07110091743119266, 0.07396788990825688, 0.08944954128440367, 0.06938073394495413, 0.07052752293577981, 0.07339449541284404, 0.07568807339449542, 0.07855504587155963, 0.08142201834862385, 0.08543577981651376, 0.0911697247706422, 0.09690366972477064, 0.10550458715596331, 0.11754587155963303, 0.13360091743119265, 0.16341743119266056, 0.20871559633027523, 0.26376146788990823, 0.3956422018348624], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/BacA.gap.json b/pfam_gap_rates/BacA.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ac8dcc3b96a954bb4a56237779b41beb33a8df7a
--- /dev/null
+++ b/pfam_gap_rates/BacA.gap.json
@@ -0,0 +1 @@
+{"family": "BacA", "n_seqs": 2043, "length": 295, "gap_rates": [0.43759177679882527, 0.06020558002936858, 0.049437102300538424, 0.04405286343612335, 0.042584434654919234, 0.041116005873715125, 0.040626529613313755, 0.03768967205090553, 0.03720019579050416, 0.03671071953010279, 0.03671071953010279, 0.03671071953010279, 0.03671071953010279, 0.03671071953010279, 0.03671071953010279, 0.03671071953010279, 0.03671071953010279, 0.03671071953010279, 0.03671071953010279, 0.03671071953010279, 0.03671071953010279, 0.03573176700930005, 0.03573176700930005, 0.03573176700930005, 0.03573176700930005, 0.03622124326970142, 0.03573176700930005, 0.03573176700930005, 0.03573176700930005, 0.07244248653940284, 0.03866862457170827, 0.8761625061184533, 0.9373470386686246, 0.8223201174743024, 0.03768967205090553, 0.30641213901125797, 0.6999510523739598, 0.9393049437102301, 0.8086147821830642, 0.48164464023494863, 0.08418991678903573, 0.03671071953010279, 0.9260890846793931, 0.6118453255017132, 0.033284385707293196, 0.03622124326970142, 0.033773861967694566, 0.032794909446891826, 0.03181595692608909, 0.03132648066568772, 0.03132648066568772, 0.03132648066568772, 0.03132648066568772, 0.03132648066568772, 0.03132648066568772, 0.032305433186490456, 0.03181595692608909, 0.03181595692608909, 0.03181595692608909, 0.03181595692608909, 0.032305433186490456, 0.032305433186490456, 0.032305433186490456, 0.032305433186490456, 0.033284385707293196, 0.033284385707293196, 0.033284385707293196, 0.033773861967694566, 0.033773861967694566, 0.08663729809104258, 0.08174253548702888, 0.09104258443465492, 0.10621634850709741, 0.13999021047479196, 0.15516397454723446, 0.14390602055800295, 0.05824767498776309, 0.14390602055800295, 0.16152716593245228, 0.27802251590797844, 0.425354870288791, 0.49583945178658834, 0.6328928046989721, 0.8448360254527656, 0.8849730788056779, 0.9040626529613314, 0.9441997063142438, 0.9486049926578561, 0.9231522271169849, 0.8962310327949095, 0.8663729809104258, 0.723935389133627, 0.5408712677435145, 0.4410181106216349, 0.33186490455212925, 0.17963778756730298, 0.15320606950562898, 0.13656387665198239, 0.039647577092511016, 0.039647577092511016, 0.0381791483113069, 0.034263338228095935, 0.033773861967694566, 0.033284385707293196, 0.033773861967694566, 0.033773861967694566, 0.034263338228095935, 0.033773861967694566, 0.033773861967694566, 0.033773861967694566, 0.03524229074889868, 0.034263338228095935, 0.033773861967694566, 0.03915810083210964, 0.03622124326970142, 0.032794909446891826, 0.03768967205090553, 0.033773861967694566, 0.03671071953010279, 0.03573176700930005, 0.03573176700930005, 0.03573176700930005, 0.03720019579050416, 0.039647577092511016, 0.03622124326970142, 0.03866862457170827, 0.033284385707293196, 0.04747919725893294, 0.8683308859520313, 0.09789525208027411, 0.039647577092511016, 0.03181595692608909, 0.032794909446891826, 0.032305433186490456, 0.03181595692608909, 0.03181595692608909, 0.03181595692608909, 0.03181595692608909, 0.03181595692608909, 0.030837004405286344, 0.03132648066568772, 0.03132648066568772, 0.03132648066568772, 0.03181595692608909, 0.03132648066568772, 0.03132648066568772, 0.030837004405286344, 0.9348996573666177, 0.9304943710230054, 0.030347528144884974, 0.032794909446891826, 0.04503181595692609, 0.12530592266275087, 0.49583945178658834, 0.6818404307391092, 0.8751835535976505, 0.9285364659813999, 0.9432207537934411, 0.9481155163974547, 0.937836514929026, 0.9050416054821341, 0.744982868330886, 0.5379344101811062, 0.18208516886930984, 0.09593734703866863, 0.03573176700930005, 0.03181595692608909, 0.030837004405286344, 0.033773861967694566, 0.030347528144884974, 0.030347528144884974, 0.030347528144884974, 0.030347528144884974, 0.030347528144884974, 0.0298580518844836, 0.0298580518844836, 0.0298580518844836, 0.0298580518844836, 0.0298580518844836, 0.0298580518844836, 0.0298580518844836, 0.0298580518844836, 0.0298580518844836, 0.0298580518844836, 0.0298580518844836, 0.0298580518844836, 0.9280469897209985, 0.0298580518844836, 0.033773861967694566, 0.02936857562408223, 0.02936857562408223, 0.02936857562408223, 0.030347528144884974, 0.0298580518844836, 0.030347528144884974, 0.0298580518844836, 0.0298580518844836, 0.0298580518844836, 0.0298580518844836, 0.02936857562408223, 0.02936857562408223, 0.02936857562408223, 0.02887909936368086, 0.027900146842878122, 0.027900146842878122, 0.027900146842878122, 0.028389623103279492, 0.02741067058247675, 0.02741067058247675, 0.027900146842878122, 0.027900146842878122, 0.027900146842878122, 0.02741067058247675, 0.02594224180127264, 0.02594224180127264, 0.02594224180127264, 0.02594224180127264, 0.02594224180127264, 0.025452765540871267, 0.025452765540871267, 0.025452765540871267, 0.025452765540871267, 0.02594224180127264, 0.025452765540871267, 0.02594224180127264, 0.02594224180127264, 0.02594224180127264, 0.02594224180127264, 0.02594224180127264, 0.02643171806167401, 0.02594224180127264, 0.9451786588350465, 0.02643171806167401, 0.03132648066568772, 0.02692119432207538, 0.1027900146842878, 0.19823788546255505, 0.7508565834557024, 0.9099363680861479, 0.8188937836514929, 0.6118453255017132, 0.15173764072442486, 0.06950562897699461, 0.02692119432207538, 0.13313754282917278, 0.08321096426823299, 0.06607929515418502, 0.0597161037689672, 0.06020558002936858, 0.05824767498776309, 0.02887909936368086, 0.912873225648556, 0.9422418012726382, 0.863925599608419, 0.027900146842878122, 0.02741067058247675, 0.02741067058247675, 0.02741067058247675, 0.02692119432207538, 0.02692119432207538, 0.02692119432207538, 0.02692119432207538, 0.02692119432207538, 0.02692119432207538, 0.02692119432207538, 0.02692119432207538, 0.02692119432207538, 0.02692119432207538, 0.02692119432207538, 0.02741067058247675, 0.02741067058247675, 0.02741067058247675, 0.02741067058247675, 0.02741067058247675, 0.02741067058247675, 0.02741067058247675, 0.02741067058247675, 0.02741067058247675, 0.027900146842878122, 0.02936857562408223, 0.027900146842878122, 0.03132648066568772, 0.03132648066568772, 0.030837004405286344, 0.02936857562408223, 0.0298580518844836, 0.03181595692608909, 0.033773861967694566, 0.03524229074889868, 0.03768967205090553, 0.03671071953010279, 0.042094958394517865, 0.04552129221732746, 0.07391091532060695, 0.540381791483113], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Bac_export_2.gap.json b/pfam_gap_rates/Bac_export_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ac178148ee83e8b156b7b7373632a4b2bcb7f73e
--- /dev/null
+++ b/pfam_gap_rates/Bac_export_2.gap.json
@@ -0,0 +1 @@
+{"family": "Bac_export_2", "n_seqs": 1567, "length": 343, "gap_rates": [0.5947670708359923, 0.3675813656668794, 0.3637523931078494, 0.3631142310146777, 0.3631142310146777, 0.3631142310146777, 0.3631142310146777, 0.3631142310146777, 0.3631142310146777, 0.3631142310146777, 0.3631142310146777, 0.3631142310146777, 0.3624760689215061, 0.3624760689215061, 0.3624760689215061, 0.3624760689215061, 0.3624760689215061, 0.3624760689215061, 0.3624760689215061, 0.3631142310146777, 0.3624760689215061, 0.3618379068283344, 0.36119974473516275, 0.36119974473516275, 0.36119974473516275, 0.36119974473516275, 0.36056158264199106, 0.36056158264199106, 0.36056158264199106, 0.36056158264199106, 0.3599234205488194, 0.35928525845564774, 0.35864709636247605, 0.35864709636247605, 0.35864709636247605, 0.35864709636247605, 0.3580089342693044, 0.3580089342693044, 0.3631142310146777, 0.3599234205488194, 0.36056158264199106, 0.35928525845564774, 0.3573707721761327, 0.3573707721761327, 0.3573707721761327, 0.35864709636247605, 0.35864709636247605, 0.3573707721761327, 0.3573707721761327, 0.3560944479897894, 0.3560944479897894, 0.3560944479897894, 0.3560944479897894, 0.3567326100829611, 0.3573707721761327, 0.3560944479897894, 0.3580089342693044, 0.35864709636247605, 0.3580089342693044, 0.35864709636247605, 0.35545628589661776, 0.3567326100829611, 0.3599234205488194, 0.3631142310146777, 0.383535417996171, 0.4620293554562859, 0.8761965539246969, 0.9317166560306318, 0.5277600510529674, 0.398851308232291, 0.3771537970644544, 0.3599234205488194, 0.3580089342693044, 0.3567326100829611, 0.3560944479897894, 0.3631142310146777, 0.3637523931078494, 0.3580089342693044, 0.3567326100829611, 0.35545628589661776, 0.3548181238034461, 0.35545628589661776, 0.35545628589661776, 0.35545628589661776, 0.35545628589661776, 0.35545628589661776, 0.3541799617102744, 0.35354179961710275, 0.35290363752393106, 0.35290363752393106, 0.35290363752393106, 0.3541799617102744, 0.3541799617102744, 0.3541799617102744, 0.3548181238034461, 0.3548181238034461, 0.3548181238034461, 0.3567326100829611, 0.3567326100829611, 0.3573707721761327, 0.3560944479897894, 0.3567326100829611, 0.3560944479897894, 0.3560944479897894, 0.3560944479897894, 0.35545628589661776, 0.3548181238034461, 0.35545628589661776, 0.3541799617102744, 0.3541799617102744, 0.35545628589661776, 0.3560944479897894, 0.3637523931078494, 0.3631142310146777, 0.3560944479897894, 0.3541799617102744, 0.3541799617102744, 0.35354179961710275, 0.35354179961710275, 0.35354179961710275, 0.35354179961710275, 0.35354179961710275, 0.35354179961710275, 0.35354179961710275, 0.35354179961710275, 0.3541799617102744, 0.3567326100829611, 0.3567326100829611, 0.3548181238034461, 0.35545628589661776, 0.35545628589661776, 0.35545628589661776, 0.3548181238034461, 0.3548181238034461, 0.3560944479897894, 0.35545628589661776, 0.3567326100829611, 0.3560944479897894, 0.3548181238034461, 0.3548181238034461, 0.3548181238034461, 0.3548181238034461, 0.3548181238034461, 0.3548181238034461, 0.3548181238034461, 0.3548181238034461, 0.3548181238034461, 0.3548181238034461, 0.3548181238034461, 0.3548181238034461, 0.3548181238034461, 0.3548181238034461, 0.3548181238034461, 0.3548181238034461, 0.3548181238034461, 0.3548181238034461, 0.3548181238034461, 0.3548181238034461, 0.3548181238034461, 0.3548181238034461, 0.3548181238034461, 0.3548181238034461, 0.3548181238034461, 0.3548181238034461, 0.3548181238034461, 0.3560944479897894, 0.3560944479897894, 0.35545628589661776, 0.3580089342693044, 0.3560944479897894, 0.35545628589661776, 0.3599234205488194, 0.3573707721761327, 0.3560944479897894, 0.35545628589661776, 0.3541799617102744, 0.35354179961710275, 0.35354179961710275, 0.3541799617102744, 0.3541799617102744, 0.35545628589661776, 0.3560944479897894, 0.35545628589661776, 0.3548181238034461, 0.35354179961710275, 0.35354179961710275, 0.35354179961710275, 0.35354179961710275, 0.35354179961710275, 0.35354179961710275, 0.35354179961710275, 0.35354179961710275, 0.35354179961710275, 0.35354179961710275, 0.35354179961710275, 0.35354179961710275, 0.35290363752393106, 0.35290363752393106, 0.35290363752393106, 0.35290363752393106, 0.35290363752393106, 0.35290363752393106, 0.35290363752393106, 0.35290363752393106, 0.35290363752393106, 0.35290363752393106, 0.35354179961710275, 0.35354179961710275, 0.3541799617102744, 0.3541799617102744, 0.3548181238034461, 0.3548181238034461, 0.35545628589661776, 0.3560944479897894, 0.3560944479897894, 0.3560944479897894, 0.3560944479897894, 0.3548181238034461, 0.3548181238034461, 0.3548181238034461, 0.3548181238034461, 0.3548181238034461, 0.35545628589661776, 0.35545628589661776, 0.35545628589661776, 0.35545628589661776, 0.35545628589661776, 0.35545628589661776, 0.35545628589661776, 0.3548181238034461, 0.3548181238034461, 0.35545628589661776, 0.3548181238034461, 0.3541799617102744, 0.3541799617102744, 0.3541799617102744, 0.3541799617102744, 0.3548181238034461, 0.3548181238034461, 0.3548181238034461, 0.3548181238034461, 0.35545628589661776, 0.35545628589661776, 0.3560944479897894, 0.3567326100829611, 0.3567326100829611, 0.35545628589661776, 0.3618379068283344, 0.36439055520102104, 0.3599234205488194, 0.36119974473516275, 0.36056158264199106, 0.35864709636247605, 0.3573707721761327, 0.3567326100829611, 0.3567326100829611, 0.3567326100829611, 0.3567326100829611, 0.3567326100829611, 0.3560944479897894, 0.35545628589661776, 0.3560944479897894, 0.35354179961710275, 0.3484365028717294, 0.32865347798340777, 0.31397574984045945, 0.2992980216975112, 0.2654754307594129, 0.21378430121250797, 0.0389278876834716, 0.03446075303126994, 0.029993618379068283, 0.03063178047223995, 0.031269942565411615, 0.029993618379068283, 0.03254626675175495, 0.03190810465858328, 0.24441608168474793, 0.08679004467134652, 0.02871729419272495, 0.02871729419272495, 0.028079132099553285, 0.028079132099553285, 0.026802807913209957, 0.02744097000638162, 0.02616464582003829, 0.02616464582003829, 0.02616464582003829, 0.02616464582003829, 0.02616464582003829, 0.026802807913209957, 0.02744097000638162, 0.025526483726866625, 0.025526483726866625, 0.02616464582003829, 0.02616464582003829, 0.025526483726866625, 0.025526483726866625, 0.02616464582003829, 0.02616464582003829, 0.02616464582003829, 0.025526483726866625, 0.02488832163369496, 0.02488832163369496, 0.02488832163369496, 0.02488832163369496, 0.023611997447351627, 0.023611997447351627, 0.023611997447351627, 0.023611997447351627, 0.023611997447351627, 0.023611997447351627, 0.025526483726866625, 0.02616464582003829, 0.02616464582003829, 0.035737077217613274, 0.042756860242501596, 0.025526483726866625, 0.0408423739629866, 0.09508615188257817, 0.26419910657306955, 0.02488832163369496, 0.024250159540523293, 0.024250159540523293, 0.024250159540523293, 0.024250159540523293, 0.024250159540523293, 0.024250159540523293, 0.024250159540523293, 0.024250159540523293, 0.025526483726866625, 0.02616464582003829, 0.02616464582003829, 0.02616464582003829, 0.02616464582003829, 0.02616464582003829, 0.026802807913209957, 0.026802807913209957, 0.028079132099553285, 0.03254626675175495, 0.04658583280153159, 0.07721761327377154, 0.2431397574984046], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Barstar.gap.json b/pfam_gap_rates/Barstar.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..5154888a9a2698a5b20e1b9618b8f18ef10ced99
--- /dev/null
+++ b/pfam_gap_rates/Barstar.gap.json
@@ -0,0 +1 @@
+{"family": "Barstar", "n_seqs": 372, "length": 90, "gap_rates": [0.7446236559139785, 0.23118279569892472, 0.18010752688172044, 0.13440860215053763, 0.11827956989247312, 0.08870967741935484, 0.06720430107526881, 0.04838709677419355, 0.03494623655913978, 0.026881720430107527, 0.024193548387096774, 0.021505376344086023, 0.01881720430107527, 0.010752688172043012, 0.008064516129032258, 0.008064516129032258, 0.002688172043010753, 0.008064516129032258, 0.005376344086021506, 0.002688172043010753, 0.002688172043010753, 0.002688172043010753, 0.9005376344086021, 0.0, 0.008064516129032258, 0.002688172043010753, 0.010752688172043012, 0.002688172043010753, 0.002688172043010753, 0.002688172043010753, 0.002688172043010753, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.11021505376344086, 0.2661290322580645, 0.6290322580645161, 0.9220430107526881, 0.9381720430107527, 0.706989247311828, 0.3709677419354839, 0.22580645161290322, 0.026881720430107527, 0.0, 0.15591397849462366, 0.1478494623655914, 0.12096774193548387, 0.010752688172043012, 0.010752688172043012, 0.008064516129032258, 0.008064516129032258, 0.008064516129032258, 0.010752688172043012, 0.016129032258064516, 0.01881720430107527, 0.02956989247311828, 0.03225806451612903, 0.03225806451612903, 0.03225806451612903, 0.03494623655913978, 0.05913978494623656, 0.06451612903225806, 0.06182795698924731, 0.06451612903225806, 0.9059139784946236, 0.09946236559139784, 0.09946236559139784, 0.0967741935483871, 0.10215053763440861, 0.11021505376344086, 0.12365591397849462, 0.13440860215053763, 0.13440860215053763, 0.13978494623655913, 0.1639784946236559, 0.21236559139784947, 0.239247311827957, 0.29838709677419356, 0.33602150537634407, 0.3951612903225806, 0.5241935483870968, 0.6908602150537635, 0.9166666666666666], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Bax1-I.gap.json b/pfam_gap_rates/Bax1-I.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..fd73289087ac7d1a69a557d1aef2eadcbe0b06fd
--- /dev/null
+++ b/pfam_gap_rates/Bax1-I.gap.json
@@ -0,0 +1 @@
+{"family": "Bax1-I", "n_seqs": 2187, "length": 246, "gap_rates": [0.6483767718335619, 0.23136716963877457, 0.14769090077732053, 0.12437128486511202, 0.11019661636945588, 0.102880658436214, 0.09693644261545496, 0.09465020576131687, 0.09419295839048926, 0.09007773205304069, 0.08641975308641975, 0.0877914951989026, 0.08550525834476452, 0.08459076360310928, 0.08321902149062643, 0.0850480109739369, 0.08184727937814358, 0.08093278463648834, 0.9405578417924096, 0.08093278463648834, 0.0800182898948331, 0.07910379515317786, 0.07864654778235025, 0.07681755829903979, 0.07636031092821216, 0.07818930041152264, 0.10699588477366255, 0.1005944215820759, 0.1056241426611797, 0.11431184270690443, 0.40420667581161407, 0.7558299039780522, 0.8591678097850938, 0.9172382258802012, 0.934156378600823, 0.9433013260173754, 0.9401005944215821, 0.9250114311842706, 0.9062642889803384, 0.8248742569730224, 0.5546410608139003, 0.37585733882030176, 0.28989483310470965, 0.23731138545953362, 0.21582075903063558, 0.19433013260173754, 0.14540466392318244, 0.20210333790580703, 0.13031550068587106, 0.13443072702331962, 0.10699588477366255, 0.09327846364883402, 0.08367626886145405, 0.07544581618655692, 0.0695016003657979, 0.06538637402834933, 0.06264288980338363, 0.07087334247828075, 0.06538637402834933, 0.06264288980338363, 0.05852766346593507, 0.05852766346593507, 0.05989940557841793, 0.7654320987654321, 0.0644718792866941, 0.4179240969364426, 0.2267946959304984, 0.3443072702331962, 0.10928212162780064, 0.15912208504801098, 0.4618198445358939, 0.17649748513946045, 0.08870598994055784, 0.13260173754000915, 0.18381344307270234, 0.17146776406035666, 0.0722450845907636, 0.056241426611796985, 0.0722450845907636, 0.33973479652492, 0.31824417009602196, 0.9218106995884774, 0.04846822130772748, 0.04572473708276177, 0.0438957475994513, 0.04343850022862369, 0.04343850022862369, 0.04252400548696845, 0.04298125285779607, 0.0411522633744856, 0.04481024234110654, 0.04435299497027892, 0.04343850022862369, 0.04252400548696845, 0.04206675811614083, 0.04069501600365798, 0.040237768632830365, 0.040237768632830365, 0.040237768632830365, 0.03566529492455418, 0.035208047553726564, 0.03429355281207133, 0.03383630544124371, 0.03383630544124371, 0.1005944215820759, 0.6863283036122543, 0.7896662094192959, 0.8587105624142661, 0.6968449931412894, 0.66986739826246, 0.03566529492455418, 0.03657978966620942, 0.0361225422953818, 0.0361225422953818, 0.03566529492455418, 0.03566529492455418, 0.037494284407864654, 0.0361225422953818, 0.03566529492455418, 0.03566529492455418, 0.035208047553726564, 0.035208047553726564, 0.0361225422953818, 0.03566529492455418, 0.037037037037037035, 0.0361225422953818, 0.03475080018289895, 0.035208047553726564, 0.035208047553726564, 0.03475080018289895, 0.0361225422953818, 0.037494284407864654, 0.03566529492455418, 0.03429355281207133, 0.03475080018289895, 0.8545953360768176, 0.03475080018289895, 0.0361225422953818, 0.9254686785550983, 0.9236396890717878, 0.0361225422953818, 0.0361225422953818, 0.0361225422953818, 0.909007773205304, 0.03657978966620942, 0.03657978966620942, 0.0361225422953818, 0.037037037037037035, 0.03657978966620942, 0.03657978966620942, 0.037037037037037035, 0.03475080018289895, 0.035208047553726564, 0.035208047553726564, 0.03429355281207133, 0.03429355281207133, 0.03337905807041609, 0.03383630544124371, 0.03383630544124371, 0.03429355281207133, 0.03429355281207133, 0.03383630544124371, 0.03566529492455418, 0.03657978966620942, 0.0411522633744856, 0.04435299497027892, 0.06630086877000457, 0.06675811614083219, 0.86374028349337, 0.9227251943301326, 0.9451303155006858, 0.877914951989026, 0.6986739826245999, 0.06630086877000457, 0.07407407407407407, 0.05898491083676269, 0.04481024234110654, 0.04846822130772748, 0.04618198445358939, 0.041609510745313216, 0.04298125285779607, 0.9099222679469593, 0.039323273891175126, 0.03657978966620942, 0.037037037037037035, 0.03657978966620942, 0.037037037037037035, 0.03657978966620942, 0.03657978966620942, 0.0361225422953818, 0.035208047553726564, 0.03429355281207133, 0.03383630544124371, 0.03475080018289895, 0.035208047553726564, 0.037037037037037035, 0.037494284407864654, 0.037951531778692274, 0.06218564243255601, 0.040237768632830365, 0.04069501600365798, 0.9423868312757202, 0.9451303155006858, 0.9423868312757202, 0.040237768632830365, 0.07864654778235025, 0.31504343850022865, 0.2780064014631916, 0.12162780064014632, 0.08367626886145405, 0.14266117969821673, 0.08870598994055784, 0.10013717421124829, 0.0823045267489712, 0.5994513031550068, 0.6529492455418381, 0.8299039780521262, 0.9181527206218564, 0.8756287151348879, 0.6945587562871514, 0.6433470507544582, 0.594421582075903, 0.4476451760402378, 0.42661179698216734, 0.053955189757658895, 0.05486968449931413, 0.055326931870141746, 0.055784179240969366, 0.055784179240969366, 0.056241426611796985, 0.05715592135345222, 0.058070416095107456, 0.058070416095107456, 0.05944215820759031, 0.05989940557841793, 0.05989940557841793, 0.06127114769090078, 0.06264288980338363, 0.06310013717421124, 0.06355738454503887, 0.06721536351165981, 0.06904435299497028, 0.07681755829903979, 0.08641975308641975, 0.10105166895290352, 0.24554183813443073], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/BcrAD_BadFG.gap.json b/pfam_gap_rates/BcrAD_BadFG.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..6ef5e6909e0b39b6fdd585f2b81f1cd613db2e89
--- /dev/null
+++ b/pfam_gap_rates/BcrAD_BadFG.gap.json
@@ -0,0 +1 @@
+{"family": "BcrAD_BadFG", "n_seqs": 2507, "length": 313, "gap_rates": [0.33426406063023534, 0.16154766653370561, 0.10051854806541684, 0.08336657359393698, 0.08216992421220583, 0.07897885919425608, 0.07897885919425608, 0.07897885919425608, 0.07897885919425608, 0.07897885919425608, 0.0793777423214998, 0.07897885919425608, 0.07738332668528121, 0.07698444355803749, 0.07738332668528121, 0.07857997606701236, 0.07897885919425608, 0.07897885919425608, 0.10530514559234144, 0.09652971679297966, 0.9062624650977263, 0.17311527722377343, 0.14599122457120065, 0.1428001595532509, 0.14120462704427603, 0.1360191463901077, 0.13003589948145194, 0.1431990426804946, 0.16673314718787396, 0.1675309134423614, 0.14678899082568808, 0.12883925009972078, 0.12165935380933386, 0.11966493817311527, 0.381332269644994, 0.2911846828879138, 0.39529317909852413, 0.5532508974870363, 0.5616274431591544, 0.5428799361786997, 0.5033905065815716, 0.4244116473873155, 0.35739928201037097, 0.28879138412445154, 0.22417231751096928, 0.1790985241324292, 0.08815317112086159, 0.08137215795771839, 0.07578779417630634, 0.07379337854008776, 0.07499002792181891, 0.07379337854008776, 0.07738332668528121, 0.08097327483047467, 0.08575987235739928, 0.08456322297566812, 0.0905464698843239, 0.09892301555644196, 0.09932189868368568, 0.30514559234144395, 0.23613881132828082, 0.1790985241324292, 0.18986836856800957, 0.1587554846429996, 0.19545273234942162, 0.18907060231352213, 0.4970083765456721, 0.4104507379337854, 0.17271639409652972, 0.05504587155963303, 0.051854806541683285, 0.04746709214200239, 0.04946150777822098, 0.05025927403270842, 0.05025927403270842, 0.049062624650977264, 0.048663741523733546, 0.05025927403270842, 0.05305145592341444, 0.33905065815715996, 0.30075787794176306, 0.09134423613881133, 0.05544475468687674, 0.11487834064619067, 0.08137215795771839, 0.07538891104906262, 0.06581571599521341, 0.12165935380933386, 0.2676505783805345, 0.6832867969684883, 0.7151974471479856, 0.8209014758675708, 0.8887116074990028, 0.9413641802951735, 0.9170323095333067, 0.8731551655364979, 0.751495811727164, 0.69206222576785, 0.6785001994415636, 0.03470283207020343, 0.03669724770642202, 0.03669724770642202, 0.03390506581571599, 0.03430394894295971, 0.03510171519744715, 0.03430394894295971, 0.03430394894295971, 0.03510171519744715, 0.033506182688472275, 0.03191065017949741, 0.029916234543278818, 0.02792181890706023, 0.027124052652572797, 0.02672516952532908, 0.02632628639808536, 0.017949740725967292, 0.7004387714399681, 0.9285999202233746, 0.7367371360191464, 0.6529716792979657, 0.017550857598723574, 0.015955325089748704, 0.016354208216992423, 0.016354208216992423, 0.015556441962504986, 0.014758675708017551, 0.014758675708017551, 0.014758675708017551, 0.014758675708017551, 0.015157558835261268, 0.014758675708017551, 0.014758675708017551, 0.015556441962504986, 0.014758675708017551, 0.015556441962504986, 0.029118468288791385, 0.5943358595931392, 0.03151176705225369, 0.01954527323494216, 0.017949740725967292, 0.01874750698045473, 0.025528520143597924, 0.05544475468687674, 0.11727163940965298, 0.06940566414040686, 0.012764260071798962, 0.01316314319904268, 0.01316314319904268, 0.01316314319904268, 0.014359792580773833, 0.013960909453530115, 0.01316314319904268, 0.012764260071798962, 0.01316314319904268, 0.013562026326286399, 0.013960909453530115, 0.013562026326286399, 0.01316314319904268, 0.01316314319904268, 0.01316314319904268, 0.01316314319904268, 0.013960909453530115, 0.016354208216992423, 0.017949740725967292, 0.017151974471479856, 0.01874750698045473, 0.021938571998404467, 0.02153968887116075, 0.022736338252891904, 0.027124052652572797, 0.028719585161547666, 0.030714000797766254, 0.030714000797766254, 0.03470283207020343, 0.03310729956122856, 0.033506182688472275, 0.038292780215396886, 0.03470283207020343, 0.03948942959712804, 0.03948942959712804, 0.6804946150777822, 0.6816912644595133, 0.6824890307140008, 0.6824890307140008, 0.6832867969684883, 0.6836856800957319, 0.6848823294774631, 0.6872756282409254, 0.6964499401675309, 0.741523733546071, 0.8308735540486637, 0.9258077383326685, 0.9317909852413243, 0.8919026725169525, 0.7786198643797367, 0.707618667730355, 0.6904666932588751, 0.6860789788591942, 0.6844834463502194, 0.6836856800957319, 0.6832867969684883, 0.6824890307140008, 0.6824890307140008, 0.6816912644595133, 0.6637415237335461, 0.06860789788591942, 0.05783805345033905, 0.0837654567211807, 0.04268049461507778, 0.03909054646988432, 0.03789389708815317, 0.03709613083366574, 0.0362983645791783, 0.035899481451934584, 0.03669724770642202, 0.03749501396090946, 0.03749501396090946, 0.038292780215396886, 0.04228161148783406, 0.04188272836059035, 0.0430793777423215, 0.043478260869565216, 0.043478260869565216, 0.045871559633027525, 0.045871559633027525, 0.048663741523733546, 0.04706820901475867, 0.04188272836059035, 0.040686078978859196, 0.038292780215396886, 0.038691663342640605, 0.03909054646988432, 0.03909054646988432, 0.038292780215396886, 0.03789389708815317, 0.038292780215396886, 0.038691663342640605, 0.038292780215396886, 0.03909054646988432, 0.038691663342640605, 0.038691663342640605, 0.03909054646988432, 0.03948942959712804, 0.03948942959712804, 0.03988831272437176, 0.04028719585161548, 0.03988831272437176, 0.040686078978859196, 0.04268049461507778, 0.04188272836059035, 0.046669325887514955, 0.04946150777822098, 0.05265257279617072, 0.053849222177901876, 0.05265257279617072, 0.054248105305145594, 0.05345033905065816, 0.16952532907857998, 0.19226166733147187, 0.23972875947347427, 0.7255684084563223, 0.9421619465496609, 0.7901874750698046, 0.6884722776226566, 0.057040287195851615, 0.05544475468687674, 0.05464698843238931, 0.05464698843238931, 0.05464698843238931, 0.05624252094136418, 0.06142800159553251, 0.07379337854008776, 0.08895093737534902, 0.10331072995612285, 0.2772237734343837, 0.2520941364180295, 0.2520941364180295, 0.21619465496609494, 0.22656561627443159, 0.22935779816513763, 0.18428400478659754, 0.5688073394495413, 0.5472676505783806, 0.5345033905065816, 0.5209413641802951, 0.49980055843637816, 0.19345831671320304, 0.20143597925807738, 0.209014758675708, 0.2153968887116075, 0.23693657758276826, 0.4148384523334663, 0.9126445951336258, 0.4160351017151974, 0.38213003589948147, 0.347427203829278, 0.25408855205424813, 0.2177901874750698, 0.2157957718388512, 0.2157957718388512, 0.21699242122058238, 0.21858795372955725, 0.21938571998404469, 0.21938571998404469, 0.21858795372955725, 0.21898683685680095, 0.22576785001994415, 0.22935779816513763, 0.2381332269644994, 0.258476266453929, 0.2955723972875947, 0.3925009972078181, 0.4898284802552852], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Big_2.gap.json b/pfam_gap_rates/Big_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..5a457549be7a7137146d07d0d0e4d8cfc8ba5a57
--- /dev/null
+++ b/pfam_gap_rates/Big_2.gap.json
@@ -0,0 +1 @@
+{"family": "Big_2", "n_seqs": 3483, "length": 84, "gap_rates": [0.905254091300603, 0.6669537754809073, 0.5440712029859317, 0.4599483204134367, 0.3990812517944301, 0.36175710594315247, 0.3298880275624462, 0.3140970427792133, 0.2991673844387023, 0.27820844099913866, 0.2761986792994545, 0.22710307206431238, 0.20930232558139536, 0.19150157909847831, 0.17685902957220787, 0.1642262417456216, 0.15446454206144128, 0.1441286247487798, 0.1346540338788401, 0.12977318403674992, 0.12431811656617858, 0.11714039621016366, 0.11283376399655469, 0.10967556703990812, 0.10651737008326155, 0.1030720643123744, 0.09847832328452484, 0.0921619293712317, 0.08699397071490095, 0.08096468561584841, 0.12948607522250932, 0.11513063451047947, 0.19925351708297445, 0.8349124318116566, 0.8969279356876256, 0.8601780074648292, 0.7832328452483491, 0.13666379557852426, 0.0714900947459087, 0.01923629055412001, 0.006316393913293138, 0.0017226528854435831, 0.0008613264427217916, 0.0008613264427217916, 0.0068906115417743325, 0.0005742176284811944, 0.0008613264427217916, 0.001435544071202986, 0.001435544071202986, 0.0008613264427217916, 0.0005742176284811944, 0.0017226528854435831, 0.01636520241171404, 0.8865920183749642, 0.06517370083261556, 0.012345679012345678, 0.006029285099052541, 0.0022968705139247776, 0.0017226528854435831, 0.004019523399368361, 0.004019523399368361, 0.004019523399368361, 0.004019523399368361, 0.004880849842090152, 0.005455067470571347, 0.0068906115417743325, 0.008039046798736722, 0.0103359173126615, 0.012345679012345678, 0.02268159632500718, 0.029859316681022107, 0.09761699684180304, 0.12374389893769738, 0.16192937123169682, 0.19580821131208728, 0.4768877404536319, 0.3476887740453632, 0.3807062876830319, 0.4292276772896928, 0.49554981337927073, 0.5641688199827735, 0.6299167384438702, 0.7223657766293425, 0.8205569910996268], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Branch.gap.json b/pfam_gap_rates/Branch.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..fbca78482620606533ae66988857d52f7751e775
--- /dev/null
+++ b/pfam_gap_rates/Branch.gap.json
@@ -0,0 +1 @@
+{"family": "Branch", "n_seqs": 1630, "length": 317, "gap_rates": [0.3257668711656442, 0.28343558282208586, 0.26134969325153373, 0.25398773006134967, 0.249079754601227, 0.24723926380368097, 0.24539877300613497, 0.5361963190184049, 0.2392638036809816, 0.46134969325153374, 0.23251533742331287, 0.2312883435582822, 0.22576687116564417, 0.22085889570552147, 0.2165644171779141, 0.2134969325153374, 0.2085889570552147, 0.20920245398773007, 0.20797546012269938, 0.20306748466257668, 0.19754601226993865, 0.19754601226993865, 0.1950920245398773, 0.7595092024539877, 0.1950920245398773, 0.3656441717791411, 0.18404907975460122, 0.18036809815950922, 0.17730061349693252, 0.17239263803680982, 0.1638036809815951, 0.1539877300613497, 0.15337423312883436, 0.15337423312883436, 0.15337423312883436, 0.15337423312883436, 0.15276073619631902, 0.4834355828220859, 0.20306748466257668, 0.201840490797546, 0.19202453987730062, 0.17730061349693252, 0.1705521472392638, 0.17607361963190185, 0.35153374233128837, 0.19693251533742331, 0.18220858895705522, 0.24294478527607363, 0.47116564417177914, 0.8177914110429448, 0.8294478527607362, 0.8386503067484663, 0.8319018404907975, 0.8233128834355828, 0.811042944785276, 0.39079754601226996, 0.1736196319018405, 0.15766871165644172, 0.15276073619631902, 0.14785276073619633, 0.1460122699386503, 0.14355828220858896, 0.14539877300613496, 0.14171779141104293, 0.1423312883435583, 0.14049079754601226, 0.4325153374233129, 0.149079754601227, 0.14294478527607363, 0.13680981595092023, 0.13496932515337423, 0.1325153374233129, 0.13067484662576687, 0.1312883435582822, 0.1312883435582822, 0.12883435582822086, 0.1276073619631902, 0.1165644171779141, 0.1165644171779141, 0.1165644171779141, 0.1147239263803681, 0.1147239263803681, 0.11349693251533742, 0.11411042944785275, 0.11226993865030675, 0.11104294478527607, 0.11042944785276074, 0.11104294478527607, 0.1098159509202454, 0.1116564417177914, 0.1098159509202454, 0.4656441717791411, 0.14171779141104293, 0.14049079754601226, 0.10858895705521472, 0.10613496932515337, 0.10429447852760736, 0.10368098159509202, 0.10368098159509202, 0.10306748466257669, 0.10245398773006135, 0.10061349693251534, 0.10184049079754601, 0.10368098159509202, 0.1049079754601227, 0.10552147239263804, 0.10429447852760736, 0.10368098159509202, 0.10245398773006135, 0.10306748466257669, 0.10122699386503067, 0.10061349693251534, 0.10122699386503067, 0.09754601226993866, 0.09754601226993866, 0.09754601226993866, 0.09815950920245399, 0.09693251533742331, 0.09815950920245399, 0.09877300613496932, 0.09938650306748466, 0.09938650306748466, 0.49325153374233127, 0.4226993865030675, 0.11595092024539877, 0.10429447852760736, 0.10858895705521472, 0.22024539877300614, 0.11779141104294479, 0.1147239263803681, 0.1147239263803681, 0.11288343558282209, 0.1116564417177914, 0.11349693251533742, 0.1147239263803681, 0.11595092024539877, 0.1196319018404908, 0.2411042944785276, 0.22883435582822087, 0.26319018404907973, 0.7723926380368098, 0.1374233128834356, 0.12269938650306748, 0.11779141104294479, 0.11717791411042945, 0.11901840490797547, 0.12515337423312883, 0.5049079754601227, 0.48098159509202454, 0.9484662576687116, 0.4607361963190184, 0.4306748466257669, 0.16993865030674846, 0.150920245398773, 0.147239263803681, 0.1441717791411043, 0.14478527607361963, 0.149079754601227, 0.1638036809815951, 0.17423312883435582, 0.5576687116564417, 0.46809815950920247, 0.4901840490797546, 0.498159509202454, 0.5766871165644172, 0.6184049079754601, 0.6312883435582822, 0.8312883435582822, 0.8447852760736196, 0.8625766871165644, 0.8723926380368098, 0.8975460122699387, 0.9361963190184049, 0.9484662576687116, 0.9429447852760736, 0.9042944785276074, 0.8809815950920246, 0.8674846625766871, 0.852760736196319, 0.8386503067484663, 0.6447852760736197, 0.6233128834355828, 0.6012269938650306, 0.561963190184049, 0.49570552147239266, 0.48711656441717793, 0.4503067484662577, 0.4269938650306748, 0.11901840490797547, 0.1116564417177914, 0.10920245398773006, 0.10858895705521472, 0.1049079754601227, 0.10429447852760736, 0.1049079754601227, 0.10858895705521472, 0.10429447852760736, 0.10368098159509202, 0.10368098159509202, 0.10368098159509202, 0.10368098159509202, 0.10429447852760736, 0.10368098159509202, 0.10429447852760736, 0.10552147239263804, 0.1049079754601227, 0.1049079754601227, 0.1067484662576687, 0.6950920245398773, 0.9496932515337423, 0.6503067484662577, 0.1067484662576687, 0.11042944785276074, 0.10920245398773006, 0.10858895705521472, 0.10797546012269939, 0.1116564417177914, 0.10736196319018405, 0.10920245398773006, 0.10920245398773006, 0.10797546012269939, 0.1067484662576687, 0.11226993865030675, 0.16134969325153375, 0.8061349693251534, 0.852760736196319, 0.8889570552147239, 0.9429447852760736, 0.949079754601227, 0.9196319018404908, 0.8601226993865031, 0.8184049079754602, 0.6503067484662577, 0.13680981595092023, 0.12085889570552147, 0.10858895705521472, 0.11104294478527607, 0.10613496932515337, 0.10736196319018405, 0.10797546012269939, 0.11042944785276074, 0.11104294478527607, 0.11104294478527607, 0.11226993865030675, 0.11288343558282209, 0.11288343558282209, 0.8361963190184049, 0.8662576687116564, 0.9233128834355828, 0.9343558282208589, 0.9386503067484663, 0.9331288343558283, 0.8699386503067484, 0.8466257668711656, 0.8282208588957055, 0.11901840490797547, 0.13496932515337423, 0.15030674846625766, 0.15460122699386503, 0.6380368098159509, 0.4306748466257669, 0.17975460122699385, 0.19079754601226995, 0.17914110429447852, 0.1754601226993865, 0.17730061349693252, 0.18098159509202455, 0.17914110429447852, 0.18282208588957055, 0.18404907975460122, 0.18282208588957055, 0.9104294478527607, 0.9202453987730062, 0.9411042944785276, 0.9368098159509203, 0.9165644171779141, 0.903680981595092, 0.18588957055214725, 0.1901840490797546, 0.1950920245398773, 0.20552147239263804, 0.21042944785276074, 0.2134969325153374, 0.8699386503067484, 0.912883435582822, 0.9349693251533743, 0.9251533742331288, 0.8993865030674847, 0.845398773006135, 0.7049079754601227, 0.4226993865030675, 0.4153374233128834, 0.41411042944785276, 0.26993865030674846, 0.27791411042944786, 0.3024539877300613, 0.3116564417177914, 0.32085889570552145, 0.33067484662576685, 0.4938650306748466, 0.8349693251533742, 0.9024539877300614, 0.8969325153374234, 0.8122699386503067, 0.36503067484662577, 0.3674846625766871, 0.3754601226993865, 0.38404907975460123, 0.39263803680981596, 0.3993865030674847, 0.405521472392638, 0.4128834355828221, 0.42024539877300615, 0.450920245398773, 0.49570552147239266, 0.5331288343558283, 0.9208588957055215], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Bravo_FIGEY.gap.json b/pfam_gap_rates/Bravo_FIGEY.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..55821fc1c2513e5afbc50a08526068e35c51226d
--- /dev/null
+++ b/pfam_gap_rates/Bravo_FIGEY.gap.json
@@ -0,0 +1 @@
+{"family": "Bravo_FIGEY", "n_seqs": 158, "length": 105, "gap_rates": [0.2848101265822785, 0.14556962025316456, 0.11392405063291139, 0.10759493670886076, 0.10126582278481013, 0.10126582278481013, 0.10126582278481013, 0.0949367088607595, 0.08860759493670886, 0.06962025316455696, 0.056962025316455694, 0.056962025316455694, 0.05063291139240506, 0.05063291139240506, 0.05063291139240506, 0.05063291139240506, 0.05063291139240506, 0.05063291139240506, 0.05063291139240506, 0.05063291139240506, 0.05063291139240506, 0.05063291139240506, 0.05063291139240506, 0.8607594936708861, 0.7468354430379747, 0.3037974683544304, 0.23417721518987342, 0.10759493670886076, 0.056962025316455694, 0.05063291139240506, 0.04430379746835443, 0.04430379746835443, 0.1518987341772152, 0.03164556962025317, 0.03164556962025317, 0.8607594936708861, 0.8924050632911392, 0.8734177215189873, 0.7974683544303798, 0.25316455696202533, 0.22784810126582278, 0.9367088607594937, 0.22151898734177214, 0.1962025316455696, 0.05063291139240506, 0.06329113924050633, 0.06329113924050633, 0.06962025316455696, 0.06962025316455696, 0.08227848101265822, 0.8544303797468354, 0.9430379746835443, 0.9493670886075949, 0.9493670886075949, 0.8607594936708861, 0.7341772151898734, 0.17088607594936708, 0.12025316455696203, 0.06329113924050633, 0.05063291139240506, 0.05063291139240506, 0.05063291139240506, 0.056962025316455694, 0.06962025316455696, 0.06962025316455696, 0.056962025316455694, 0.9113924050632911, 0.9177215189873418, 0.8924050632911392, 0.6835443037974683, 0.6645569620253164, 0.1962025316455696, 0.06329113924050633, 0.06329113924050633, 0.0379746835443038, 0.0379746835443038, 0.0379746835443038, 0.0379746835443038, 0.0379746835443038, 0.03164556962025317, 0.03164556962025317, 0.03164556962025317, 0.03164556962025317, 0.03164556962025317, 0.03164556962025317, 0.06329113924050633, 0.056962025316455694, 0.08860759493670886, 0.08860759493670886, 0.9493670886075949, 0.05063291139240506, 0.05063291139240506, 0.056962025316455694, 0.056962025316455694, 0.056962025316455694, 0.056962025316455694, 0.056962025316455694, 0.056962025316455694, 0.06329113924050633, 0.0759493670886076, 0.0759493670886076, 0.10126582278481013, 0.13924050632911392, 0.33544303797468356, 0.7848101265822784], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Bromodomain.gap.json b/pfam_gap_rates/Bromodomain.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e81765a55c3dd05f0cd71644de082648a5ca0032
--- /dev/null
+++ b/pfam_gap_rates/Bromodomain.gap.json
@@ -0,0 +1 @@
+{"family": "Bromodomain", "n_seqs": 5000, "length": 91, "gap_rates": [0.7768, 0.6476, 0.5386, 0.4448, 0.4034, 0.3782, 0.3476, 0.3252, 0.3042, 0.2722, 0.2256, 0.1924, 0.933, 0.9458, 0.9008, 0.1424, 0.1242, 0.1112, 0.0948, 0.0876, 0.0876, 0.093, 0.092, 0.1264, 0.7378, 0.7314, 0.0808, 0.0776, 0.067, 0.0596, 0.0542, 0.049, 0.0464, 0.0462, 0.0442, 0.0406, 0.0394, 0.0368, 0.0322, 0.0288, 0.0272, 0.012, 0.0106, 0.0092, 0.0086, 0.0076, 0.007, 0.0064, 0.006, 0.0064, 0.0078, 0.946, 0.9332, 0.0132, 0.0186, 0.0178, 0.0138, 0.01, 0.0106, 0.0114, 0.012, 0.0112, 0.012, 0.013, 0.0136, 0.0148, 0.0156, 0.0166, 0.0168, 0.017, 0.0176, 0.0186, 0.0198, 0.0214, 0.0218, 0.0224, 0.0242, 0.0254, 0.028, 0.0316, 0.0536, 0.0666, 0.0948, 0.1144, 0.1382, 0.1732, 0.2128, 0.2638, 0.3532, 0.5628, 0.9338], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Bystin.gap.json b/pfam_gap_rates/Bystin.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..16e5908c31230ba64749e29d492c134667c14803
--- /dev/null
+++ b/pfam_gap_rates/Bystin.gap.json
@@ -0,0 +1 @@
+{"family": "Bystin", "n_seqs": 374, "length": 341, "gap_rates": [0.9278074866310161, 0.5401069518716578, 0.27540106951871657, 0.22727272727272727, 0.21122994652406418, 0.20855614973262032, 0.20588235294117646, 0.20053475935828877, 0.20053475935828877, 0.19786096256684493, 0.19518716577540107, 0.1925133689839572, 0.1925133689839572, 0.18449197860962566, 0.18449197860962566, 0.18449197860962566, 0.18716577540106952, 0.18716577540106952, 0.18716577540106952, 0.18716577540106952, 0.18716577540106952, 0.18716577540106952, 0.19786096256684493, 0.19518716577540107, 0.28342245989304815, 0.3048128342245989, 0.37967914438502676, 0.38235294117647056, 0.4358288770053476, 0.7192513368983957, 0.7994652406417112, 0.9010695187165776, 0.93048128342246, 0.8636363636363636, 0.7647058823529411, 0.6711229946524064, 0.25668449197860965, 0.20053475935828877, 0.1711229946524064, 0.1657754010695187, 0.14171122994652408, 0.13101604278074866, 0.12566844919786097, 0.11764705882352941, 0.11497326203208556, 0.11497326203208556, 0.11497326203208556, 0.11229946524064172, 0.11229946524064172, 0.10427807486631016, 0.09893048128342247, 0.10160427807486631, 0.10160427807486631, 0.09893048128342247, 0.0962566844919786, 0.09358288770053476, 0.09893048128342247, 0.09358288770053476, 0.09090909090909091, 0.09090909090909091, 0.09358288770053476, 0.08823529411764706, 0.08823529411764706, 0.08823529411764706, 0.08823529411764706, 0.08823529411764706, 0.08823529411764706, 0.08823529411764706, 0.08823529411764706, 0.09090909090909091, 0.09090909090909091, 0.09090909090909091, 0.09358288770053476, 0.09358288770053476, 0.09358288770053476, 0.09358288770053476, 0.09090909090909091, 0.09090909090909091, 0.08823529411764706, 0.08823529411764706, 0.0855614973262032, 0.0855614973262032, 0.0855614973262032, 0.09090909090909091, 0.09358288770053476, 0.0855614973262032, 0.0855614973262032, 0.0855614973262032, 0.0855614973262032, 0.0855614973262032, 0.0855614973262032, 0.0855614973262032, 0.08288770053475936, 0.08288770053475936, 0.0855614973262032, 0.0855614973262032, 0.0855614973262032, 0.09090909090909091, 0.08823529411764706, 0.08823529411764706, 0.08823529411764706, 0.09090909090909091, 0.08823529411764706, 0.08823529411764706, 0.09090909090909091, 0.09090909090909091, 0.09090909090909091, 0.28609625668449196, 0.08823529411764706, 0.08823529411764706, 0.09358288770053476, 0.09358288770053476, 0.09358288770053476, 0.09090909090909091, 0.09090909090909091, 0.08823529411764706, 0.08823529411764706, 0.08823529411764706, 0.08823529411764706, 0.09090909090909091, 0.09090909090909091, 0.09090909090909091, 0.09090909090909091, 0.08823529411764706, 0.09090909090909091, 0.09090909090909091, 0.09090909090909091, 0.09090909090909091, 0.09090909090909091, 0.09090909090909091, 0.09090909090909091, 0.09090909090909091, 0.946524064171123, 0.9331550802139037, 0.09090909090909091, 0.09090909090909091, 0.09358288770053476, 0.09358288770053476, 0.09358288770053476, 0.0962566844919786, 0.09893048128342247, 0.09358288770053476, 0.09090909090909091, 0.09090909090909091, 0.08823529411764706, 0.0855614973262032, 0.0855614973262032, 0.0855614973262032, 0.0855614973262032, 0.0855614973262032, 0.08288770053475936, 0.0855614973262032, 0.0855614973262032, 0.0855614973262032, 0.0855614973262032, 0.08823529411764706, 0.08823529411764706, 0.09090909090909091, 0.08823529411764706, 0.08823529411764706, 0.08823529411764706, 0.0855614973262032, 0.08288770053475936, 0.08288770053475936, 0.0855614973262032, 0.0962566844919786, 0.10962566844919786, 0.32085561497326204, 0.09893048128342247, 0.09090909090909091, 0.09090909090909091, 0.09090909090909091, 0.09358288770053476, 0.09358288770053476, 0.09358288770053476, 0.09358288770053476, 0.09358288770053476, 0.09358288770053476, 0.09358288770053476, 0.09358288770053476, 0.09358288770053476, 0.09358288770053476, 0.09358288770053476, 0.09358288770053476, 0.09893048128342247, 0.09893048128342247, 0.09358288770053476, 0.0962566844919786, 0.0962566844919786, 0.0962566844919786, 0.09090909090909091, 0.09090909090909091, 0.09090909090909091, 0.09090909090909091, 0.0855614973262032, 0.0855614973262032, 0.0855614973262032, 0.08021390374331551, 0.08021390374331551, 0.08021390374331551, 0.07754010695187166, 0.8128342245989305, 0.8368983957219251, 0.8368983957219251, 0.839572192513369, 0.8475935828877005, 0.8368983957219251, 0.8368983957219251, 0.8155080213903744, 0.7754010695187166, 0.0748663101604278, 0.07219251336898395, 0.0748663101604278, 0.07219251336898395, 0.06951871657754011, 0.06951871657754011, 0.06951871657754011, 0.06951871657754011, 0.07219251336898395, 0.0748663101604278, 0.07219251336898395, 0.07219251336898395, 0.07219251336898395, 0.07219251336898395, 0.0748663101604278, 0.07219251336898395, 0.07219251336898395, 0.07219251336898395, 0.07219251336898395, 0.07219251336898395, 0.07219251336898395, 0.07219251336898395, 0.06951871657754011, 0.06951871657754011, 0.0748663101604278, 0.0748663101604278, 0.0748663101604278, 0.0748663101604278, 0.0748663101604278, 0.07754010695187166, 0.0748663101604278, 0.0748663101604278, 0.0748663101604278, 0.08021390374331551, 0.08288770053475936, 0.0855614973262032, 0.0855614973262032, 0.10962566844919786, 0.7192513368983957, 0.7433155080213903, 0.7433155080213903, 0.7941176470588235, 0.8796791443850267, 0.8850267379679144, 0.8983957219251337, 0.9171122994652406, 0.9358288770053476, 0.946524064171123, 0.9251336898395722, 0.9037433155080213, 0.8877005347593583, 0.8823529411764706, 0.8609625668449198, 0.7620320855614974, 0.7433155080213903, 0.7219251336898396, 0.7112299465240641, 0.10962566844919786, 0.1657754010695187, 0.08823529411764706, 0.8957219251336899, 0.9090909090909091, 0.9090909090909091, 0.9144385026737968, 0.9171122994652406, 0.93048128342246, 0.9491978609625669, 0.9358288770053476, 0.9278074866310161, 0.9171122994652406, 0.9117647058823529, 0.9090909090909091, 0.8957219251336899, 0.8957219251336899, 0.08288770053475936, 0.08288770053475936, 0.08288770053475936, 0.08288770053475936, 0.08288770053475936, 0.08288770053475936, 0.08288770053475936, 0.08288770053475936, 0.08288770053475936, 0.08288770053475936, 0.08288770053475936, 0.08288770053475936, 0.08288770053475936, 0.0855614973262032, 0.08288770053475936, 0.0855614973262032, 0.09090909090909091, 0.09893048128342247, 0.10160427807486631, 0.0962566844919786, 0.0962566844919786, 0.0962566844919786, 0.09893048128342247, 0.09893048128342247, 0.09893048128342247, 0.09893048128342247, 0.09893048128342247, 0.09893048128342247, 0.09893048128342247, 0.10160427807486631, 0.10160427807486631, 0.10160427807486631, 0.10695187165775401, 0.10695187165775401, 0.10962566844919786, 0.10962566844919786, 0.11229946524064172, 0.11229946524064172, 0.11229946524064172, 0.11497326203208556, 0.12032085561497326, 0.12032085561497326, 0.12032085561497326, 0.12032085561497326, 0.12299465240641712, 0.13101604278074866, 0.14171122994652408, 0.14171122994652408, 0.16042780748663102, 0.17647058823529413, 0.20053475935828877, 0.22459893048128343, 0.2887700534759358, 0.3181818181818182, 0.35294117647058826, 0.42513368983957217, 0.7620320855614974], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/C1_2.gap.json b/pfam_gap_rates/C1_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..aad2d86a6087c0195b8046fe1e1308b02792e40c
--- /dev/null
+++ b/pfam_gap_rates/C1_2.gap.json
@@ -0,0 +1 @@
+{"family": "C1_2", "n_seqs": 1930, "length": 59, "gap_rates": [0.6155440414507772, 0.18860103626943006, 0.09792746113989638, 0.047150259067357515, 0.6041450777202072, 0.032642487046632127, 0.031606217616580314, 0.031606217616580314, 0.029533678756476684, 0.027461139896373058, 0.026424870466321245, 0.8450777202072539, 0.944559585492228, 0.9145077720207254, 0.6740932642487046, 0.5139896373056995, 0.37409326424870465, 0.3072538860103627, 0.06787564766839378, 0.010880829015544042, 0.0051813471502590676, 0.002072538860103627, 0.0025906735751295338, 0.0010362694300518134, 0.0005181347150259067, 0.0005181347150259067, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.9404145077720207, 0.8373056994818653, 0.014507772020725389, 0.05336787564766839, 0.01709844559585492, 0.019689119170984457, 0.0005181347150259067, 0.7715025906735752, 0.6668393782383419, 0.0, 0.0, 0.0015544041450777201, 0.010880829015544042, 0.0010362694300518134, 0.9067357512953368, 0.8647668393782384, 0.0005181347150259067, 0.9487046632124352, 0.0015544041450777201, 0.0010362694300518134, 0.0010362694300518134, 0.0025906735751295338, 0.00466321243523316, 0.005699481865284974, 0.010880829015544042, 0.011398963730569948, 0.19430051813471502], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/CAAD.gap.json b/pfam_gap_rates/CAAD.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..94f12d57f21c35753856deac6fa5e1289effa92e
--- /dev/null
+++ b/pfam_gap_rates/CAAD.gap.json
@@ -0,0 +1 @@
+{"family": "CAAD", "n_seqs": 286, "length": 85, "gap_rates": [0.8636363636363636, 0.3951048951048951, 0.2902097902097902, 0.26573426573426573, 0.24475524475524477, 0.23426573426573427, 0.21328671328671328, 0.1993006993006993, 0.17132867132867133, 0.12937062937062938, 0.10839160839160839, 0.07692307692307693, 0.05944055944055944, 0.038461538461538464, 0.038461538461538464, 0.03496503496503497, 0.03496503496503497, 0.03496503496503497, 0.027972027972027972, 0.027972027972027972, 0.027972027972027972, 0.027972027972027972, 0.027972027972027972, 0.027972027972027972, 0.027972027972027972, 0.027972027972027972, 0.027972027972027972, 0.024475524475524476, 0.027972027972027972, 0.024475524475524476, 0.024475524475524476, 0.024475524475524476, 0.02097902097902098, 0.02097902097902098, 0.013986013986013986, 0.013986013986013986, 0.01048951048951049, 0.01048951048951049, 0.01048951048951049, 0.017482517482517484, 0.017482517482517484, 0.013986013986013986, 0.0, 0.0, 0.0, 0.0034965034965034965, 0.0034965034965034965, 0.006993006993006993, 0.006993006993006993, 0.01048951048951049, 0.01048951048951049, 0.01048951048951049, 0.01048951048951049, 0.01048951048951049, 0.01048951048951049, 0.01048951048951049, 0.027972027972027972, 0.03146853146853147, 0.03146853146853147, 0.03146853146853147, 0.027972027972027972, 0.027972027972027972, 0.027972027972027972, 0.027972027972027972, 0.027972027972027972, 0.027972027972027972, 0.03146853146853147, 0.03496503496503497, 0.03146853146853147, 0.045454545454545456, 0.05244755244755245, 0.05244755244755245, 0.05244755244755245, 0.05244755244755245, 0.05244755244755245, 0.05244755244755245, 0.05244755244755245, 0.05244755244755245, 0.055944055944055944, 0.06643356643356643, 0.07342657342657342, 0.08391608391608392, 0.10139860139860139, 0.13286713286713286, 0.21328671328671328], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/CASP_C.gap.json b/pfam_gap_rates/CASP_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..4a51a1b6211450dd782cca0af7775a5f551b88b9
--- /dev/null
+++ b/pfam_gap_rates/CASP_C.gap.json
@@ -0,0 +1 @@
+{"family": "CASP_C", "n_seqs": 249, "length": 293, "gap_rates": [0.9317269076305221, 0.4538152610441767, 0.30522088353413657, 0.27309236947791166, 0.23293172690763053, 0.20481927710843373, 0.19678714859437751, 0.17670682730923695, 0.1686746987951807, 0.1646586345381526, 0.1646586345381526, 0.1606425702811245, 0.1566265060240964, 0.1566265060240964, 0.14056224899598393, 0.14056224899598393, 0.13654618473895583, 0.1285140562248996, 0.1285140562248996, 0.1285140562248996, 0.11646586345381527, 0.11244979919678715, 0.11244979919678715, 0.11244979919678715, 0.10843373493975904, 0.10843373493975904, 0.10843373493975904, 0.10843373493975904, 0.10843373493975904, 0.10843373493975904, 0.10843373493975904, 0.10843373493975904, 0.10843373493975904, 0.10843373493975904, 0.10843373493975904, 0.10843373493975904, 0.1646586345381526, 0.1646586345381526, 0.24899598393574296, 0.42971887550200805, 0.18473895582329317, 0.14056224899598393, 0.13654618473895583, 0.12449799196787148, 0.11646586345381527, 0.14457831325301204, 0.14056224899598393, 0.17670682730923695, 0.18875502008032127, 0.20883534136546184, 0.24899598393574296, 0.2248995983935743, 0.21686746987951808, 0.2289156626506024, 0.24497991967871485, 0.8554216867469879, 0.3614457831325301, 0.4457831325301205, 0.927710843373494, 0.40160642570281124, 0.5903614457831325, 0.6867469879518072, 0.7429718875502008, 0.8594377510040161, 0.927710843373494, 0.8995983935742972, 0.8232931726907631, 0.7068273092369478, 0.642570281124498, 0.570281124497992, 0.3815261044176707, 0.43373493975903615, 0.8995983935742972, 0.927710843373494, 0.9397590361445783, 0.9156626506024096, 0.8795180722891566, 0.37349397590361444, 0.927710843373494, 0.2971887550200803, 0.17269076305220885, 0.1566265060240964, 0.14859437751004015, 0.13253012048192772, 0.13253012048192772, 0.14859437751004015, 0.14056224899598393, 0.14056224899598393, 0.14056224899598393, 0.14457831325301204, 0.19678714859437751, 0.22088353413654618, 0.27710843373493976, 0.3413654618473896, 0.2891566265060241, 0.28112449799196787, 0.27309236947791166, 0.26104417670682734, 0.10843373493975904, 0.6265060240963856, 0.6706827309236948, 0.7670682730923695, 0.8152610441767069, 0.8393574297188755, 0.9036144578313253, 0.9477911646586346, 0.9357429718875502, 0.8594377510040161, 0.8353413654618473, 0.8032128514056225, 0.7429718875502008, 0.6506024096385542, 0.606425702811245, 0.07630522088353414, 0.07630522088353414, 0.07630522088353414, 0.06827309236947791, 0.06827309236947791, 0.0642570281124498, 0.0642570281124498, 0.0642570281124498, 0.0642570281124498, 0.0642570281124498, 0.060240963855421686, 0.060240963855421686, 0.060240963855421686, 0.060240963855421686, 0.060240963855421686, 0.060240963855421686, 0.05622489959839357, 0.05622489959839357, 0.060240963855421686, 0.060240963855421686, 0.060240963855421686, 0.060240963855421686, 0.060240963855421686, 0.05622489959839357, 0.060240963855421686, 0.060240963855421686, 0.05622489959839357, 0.05622489959839357, 0.05622489959839357, 0.05622489959839357, 0.060240963855421686, 0.060240963855421686, 0.060240963855421686, 0.060240963855421686, 0.060240963855421686, 0.05622489959839357, 0.05622489959839357, 0.05622489959839357, 0.05622489959839357, 0.060240963855421686, 0.05622489959839357, 0.05622489959839357, 0.060240963855421686, 0.060240963855421686, 0.060240963855421686, 0.060240963855421686, 0.0642570281124498, 0.0642570281124498, 0.0642570281124498, 0.0642570281124498, 0.06827309236947791, 0.06827309236947791, 0.06827309236947791, 0.06827309236947791, 0.07228915662650602, 0.07228915662650602, 0.08032128514056225, 0.08032128514056225, 0.07228915662650602, 0.07228915662650602, 0.07228915662650602, 0.08433734939759036, 0.08433734939759036, 0.08433734939759036, 0.09236947791164658, 0.0963855421686747, 0.26506024096385544, 0.9397590361445783, 0.606425702811245, 0.7831325301204819, 0.7228915662650602, 0.7068273092369478, 0.7028112449799196, 0.6746987951807228, 0.6224899598393574, 0.6224899598393574, 0.6184738955823293, 0.5622489959839357, 0.4939759036144578, 0.4457831325301205, 0.43373493975903615, 0.43373493975903615, 0.40562248995983935, 0.42971887550200805, 0.3855421686746988, 0.3493975903614458, 0.2971887550200803, 0.27710843373493976, 0.25301204819277107, 0.24899598393574296, 0.27309236947791166, 0.2931726907630522, 0.24899598393574296, 0.7068273092369478, 0.7389558232931727, 0.7670682730923695, 0.9357429718875502, 0.9437751004016064, 0.9156626506024096, 0.7590361445783133, 0.7269076305220884, 0.6706827309236948, 0.37751004016064255, 0.3333333333333333, 0.30522088353413657, 0.285140562248996, 0.27309236947791166, 0.0963855421686747, 0.0963855421686747, 0.0963855421686747, 0.0963855421686747, 0.0963855421686747, 0.0963855421686747, 0.0963855421686747, 0.0963855421686747, 0.0963855421686747, 0.0963855421686747, 0.0963855421686747, 0.0963855421686747, 0.0963855421686747, 0.0963855421686747, 0.0963855421686747, 0.0963855421686747, 0.08835341365461848, 0.08835341365461848, 0.08433734939759036, 0.08433734939759036, 0.08835341365461848, 0.0963855421686747, 0.0963855421686747, 0.09236947791164658, 0.08835341365461848, 0.08433734939759036, 0.08835341365461848, 0.08835341365461848, 0.08835341365461848, 0.08835341365461848, 0.08835341365461848, 0.08835341365461848, 0.08835341365461848, 0.09236947791164658, 0.09236947791164658, 0.09236947791164658, 0.0963855421686747, 0.08835341365461848, 0.10441767068273092, 0.10441767068273092, 0.10843373493975904, 0.10843373493975904, 0.10843373493975904, 0.10843373493975904, 0.10843373493975904, 0.10843373493975904, 0.10843373493975904, 0.11244979919678715, 0.11244979919678715, 0.11646586345381527, 0.12449799196787148, 0.12449799196787148, 0.12449799196787148, 0.12449799196787148, 0.1285140562248996, 0.1285140562248996, 0.1285140562248996, 0.1285140562248996, 0.1285140562248996, 0.1285140562248996, 0.1285140562248996, 0.1285140562248996, 0.1285140562248996, 0.1285140562248996, 0.13253012048192772, 0.14056224899598393, 0.14859437751004015, 0.14859437751004015, 0.1646586345381526, 0.19678714859437751, 0.22088353413654618, 0.36947791164658633, 0.7188755020080321], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/CBFD_NFYB_HMF.gap.json b/pfam_gap_rates/CBFD_NFYB_HMF.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..1e558c74adf192f64ac658e83c1a62a2e20f2e2b
--- /dev/null
+++ b/pfam_gap_rates/CBFD_NFYB_HMF.gap.json
@@ -0,0 +1 @@
+{"family": "CBFD_NFYB_HMF", "n_seqs": 2635, "length": 67, "gap_rates": [0.28956356736242883, 0.13927893738140418, 0.11840607210626186, 0.1062618595825427, 0.07703984819734346, 0.06869070208728653, 0.06603415559772297, 0.0633776091081594, 0.06110056925996205, 0.058823529411764705, 0.037191650853889945, 0.03567362428842505, 0.03529411764705882, 0.03453510436432638, 0.5328273244781784, 0.07969639468690702, 0.029981024667931688, 0.026944971537001896, 0.02314990512333966, 0.03984819734345351, 0.949146110056926, 0.9396584440227704, 0.014041745730550285, 0.01366223908918406, 0.012144212523719165, 0.011385199240986717, 0.009487666034155597, 0.009487666034155597, 0.009487666034155597, 0.009487666034155597, 0.009487666034155597, 0.00872865275142315, 0.007590132827324478, 0.007210626185958254, 0.007590132827324478, 0.0060721062618595825, 0.007969639468690701, 0.007590132827324478, 0.007590132827324478, 0.009487666034155597, 0.00872865275142315, 0.009867172675521821, 0.011764705882352941, 0.011764705882352941, 0.01366223908918406, 0.01669829222011385, 0.018975332068311195, 0.020872865275142316, 0.022770398481973434, 0.026185958254269448, 0.029601518026565465, 0.03643263757115749, 0.03984819734345351, 0.040227703984819736, 0.03795066413662239, 0.04098671726755218, 0.04212523719165085, 0.04402277039848197, 0.044781783681214424, 0.04667931688804554, 0.052371916508538896, 0.056546489563567365, 0.06565464895635674, 0.07855787476280834, 0.11537001897533207, 0.1571157495256167, 0.2314990512333966], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/CBM_14.gap.json b/pfam_gap_rates/CBM_14.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..8146a7983339bc404fe979ffc17033fd8a7993c8
--- /dev/null
+++ b/pfam_gap_rates/CBM_14.gap.json
@@ -0,0 +1 @@
+{"family": "CBM_14", "n_seqs": 4494, "length": 65, "gap_rates": [0.3168669336893636, 0.30796617712505564, 0.4668446817979528, 0.4917668001780151, 0.9307966177125055, 0.2416555407209613, 0.19203382287494436, 0.14953271028037382, 0.10347129506008011, 0.06275033377837116, 0.0522919448153093, 0.04227859368046284, 0.937917222963952, 0.7356475300400535, 0.1864708500222519, 0.09301290609701825, 0.016466399643969738, 0.013796172674677348, 0.8204272363150867, 0.01045838896306186, 0.00801068090787717, 0.006008010680907877, 0.0053404539385847796, 0.0033377837116154874, 0.0026702269692923898, 0.0022251891410769915, 0.9234534935469515, 0.9488206497552292, 0.8722741433021807, 0.004450378282153983, 0.017801513128615932, 0.019359145527369826, 0.01824655095683133, 0.0020026702269692926, 0.8615932354250111, 0.9129951045838897, 0.9396973742768135, 0.9012016021361816, 0.7774810858923008, 0.0008900756564307966, 0.00022251891410769915, 0.0, 0.0, 0.0004450378282153983, 0.0013351134846461949, 0.003115264797507788, 0.0055629728526924785, 0.002892745883400089, 0.0033377837116154874, 0.0035603026257231864, 0.0037828215398308857, 0.006675567423230975, 0.02403204272363151, 0.022919448153093012, 0.018024032042723633, 0.018024032042723633, 0.021361815754339118, 0.03827325322652426, 0.06386292834890965, 0.09879839786381843, 0.15131286159323543, 0.67311971517579, 0.2930574098798398, 0.29439252336448596, 0.30863373386737875], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/CBM_20.gap.json b/pfam_gap_rates/CBM_20.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..3c3629b60899dbbf284e34f3820ff7530f77285a
--- /dev/null
+++ b/pfam_gap_rates/CBM_20.gap.json
@@ -0,0 +1 @@
+{"family": "CBM_20", "n_seqs": 1100, "length": 110, "gap_rates": [0.8809090909090909, 0.5218181818181818, 0.36363636363636365, 0.26181818181818184, 0.19454545454545455, 0.1618181818181818, 0.15, 0.14181818181818182, 0.8845454545454545, 0.1481818181818182, 0.1390909090909091, 0.8354545454545454, 0.11727272727272728, 0.1009090909090909, 0.08818181818181818, 0.07818181818181819, 0.06909090909090909, 0.05909090909090909, 0.05090909090909091, 0.04818181818181818, 0.03909090909090909, 0.01818181818181818, 0.016363636363636365, 0.02181818181818182, 0.02181818181818182, 0.022727272727272728, 0.024545454545454544, 0.02909090909090909, 0.03, 0.025454545454545455, 0.017272727272727273, 0.013636363636363636, 0.012727272727272728, 0.012727272727272728, 0.07, 0.06, 0.015454545454545455, 0.013636363636363636, 0.01090909090909091, 0.01090909090909091, 0.012727272727272728, 0.1318181818181818, 0.22636363636363635, 0.3190909090909091, 0.34363636363636363, 0.9427272727272727, 0.6754545454545454, 0.5409090909090909, 0.2972727272727273, 0.24636363636363637, 0.045454545454545456, 0.02090909090909091, 0.02181818181818182, 0.02181818181818182, 0.02090909090909091, 0.9254545454545454, 0.889090909090909, 0.019090909090909092, 0.02, 0.02, 0.02727272727272727, 0.03, 0.03909090909090909, 0.8336363636363636, 0.034545454545454546, 0.035454545454545454, 0.9418181818181818, 0.9163636363636364, 0.07636363636363637, 0.04, 0.034545454545454546, 0.035454545454545454, 0.035454545454545454, 0.03727272727272727, 0.03909090909090909, 0.04363636363636364, 0.9481818181818182, 0.9318181818181818, 0.06454545454545454, 0.07727272727272727, 0.08272727272727273, 0.09272727272727273, 0.19, 0.850909090909091, 0.9254545454545454, 0.7854545454545454, 0.10272727272727272, 0.10545454545454545, 0.8627272727272727, 0.10818181818181818, 0.10636363636363637, 0.10818181818181818, 0.11363636363636363, 0.9290909090909091, 0.14272727272727273, 0.14363636363636365, 0.14545454545454545, 0.15636363636363637, 0.16818181818181818, 0.18727272727272729, 0.22545454545454546, 0.2690909090909091, 0.2963636363636364, 0.36363636363636365, 0.4163636363636364, 0.4772727272727273, 0.5454545454545454, 0.6472727272727272, 0.7654545454545455, 0.860909090909091], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/CBM_35.gap.json b/pfam_gap_rates/CBM_35.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..77ac5ddf6426a248f4fa18de8657253d6ace340d
--- /dev/null
+++ b/pfam_gap_rates/CBM_35.gap.json
@@ -0,0 +1 @@
+{"family": "CBM_35", "n_seqs": 284, "length": 137, "gap_rates": [0.8556338028169014, 0.5704225352112676, 0.3415492957746479, 0.2640845070422535, 0.25704225352112675, 0.25, 0.24295774647887325, 0.2323943661971831, 0.22183098591549297, 0.22183098591549297, 0.20774647887323944, 0.19718309859154928, 0.8873239436619719, 0.18661971830985916, 0.16549295774647887, 0.15492957746478872, 0.1443661971830986, 0.12323943661971831, 0.12323943661971831, 0.10915492957746478, 0.09507042253521127, 0.09507042253521127, 0.11267605633802817, 0.056338028169014086, 0.04225352112676056, 0.04225352112676056, 0.03873239436619718, 0.06690140845070422, 0.04225352112676056, 0.04929577464788732, 0.0528169014084507, 0.04225352112676056, 0.04225352112676056, 0.02464788732394366, 0.03169014084507042, 0.014084507042253521, 0.014084507042253521, 0.028169014084507043, 0.0035211267605633804, 0.0035211267605633804, 0.0035211267605633804, 0.0035211267605633804, 0.007042253521126761, 0.01056338028169014, 0.0035211267605633804, 0.007042253521126761, 0.02112676056338028, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.9049295774647887, 0.0035211267605633804, 0.9401408450704225, 0.9119718309859155, 0.01056338028169014, 0.07746478873239436, 0.9225352112676056, 0.0035211267605633804, 0.9295774647887324, 0.007042253521126761, 0.897887323943662, 0.014084507042253521, 0.0035211267605633804, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.1056338028169014, 0.017605633802816902, 0.014084507042253521, 0.9471830985915493, 0.01056338028169014, 0.014084507042253521, 0.014084507042253521, 0.007042253521126761, 0.014084507042253521, 0.01056338028169014, 0.01056338028169014, 0.9436619718309859, 0.06338028169014084, 0.9366197183098591, 0.017605633802816902, 0.014084507042253521, 0.8626760563380281, 0.8450704225352113, 0.017605633802816902, 0.852112676056338, 0.8274647887323944, 0.017605633802816902, 0.014084507042253521, 0.017605633802816902, 0.014084507042253521, 0.017605633802816902, 0.014084507042253521, 0.014084507042253521, 0.014084507042253521, 0.014084507042253521, 0.014084507042253521, 0.014084507042253521, 0.014084507042253521, 0.014084507042253521, 0.014084507042253521, 0.014084507042253521, 0.014084507042253521, 0.02464788732394366, 0.045774647887323945, 0.07394366197183098, 0.6795774647887324, 0.7676056338028169, 0.647887323943662, 0.15845070422535212, 0.18661971830985916, 0.2007042253521127, 0.20774647887323944, 0.22183098591549297, 0.22535211267605634, 0.22535211267605634, 0.22887323943661972, 0.2323943661971831, 0.2323943661971831, 0.25704225352112675, 0.28169014084507044, 0.5035211267605634, 0.7535211267605634], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/CBM_X2.gap.json b/pfam_gap_rates/CBM_X2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..50cf1ea4acb3ebd50fd380e55600fe6bbe91067c
--- /dev/null
+++ b/pfam_gap_rates/CBM_X2.gap.json
@@ -0,0 +1 @@
+{"family": "CBM_X2", "n_seqs": 225, "length": 95, "gap_rates": [0.5555555555555556, 0.4622222222222222, 0.3288888888888889, 0.27555555555555555, 0.2311111111111111, 0.19111111111111112, 0.17777777777777778, 0.17333333333333334, 0.16444444444444445, 0.1511111111111111, 0.13333333333333333, 0.12444444444444444, 0.10666666666666667, 0.40444444444444444, 0.36444444444444446, 0.06222222222222222, 0.057777777777777775, 0.04888888888888889, 0.04888888888888889, 0.04, 0.04, 0.04, 0.04, 0.044444444444444446, 0.04, 0.035555555555555556, 0.022222222222222223, 0.8711111111111111, 0.008888888888888889, 0.008888888888888889, 0.0044444444444444444, 0.0044444444444444444, 0.0044444444444444444, 0.0044444444444444444, 0.04, 0.04, 0.044444444444444446, 0.044444444444444446, 0.017777777777777778, 0.9066666666666666, 0.057777777777777775, 0.013333333333333334, 0.017777777777777778, 0.06222222222222222, 0.013333333333333334, 0.0, 0.0, 0.0, 0.0, 0.8977777777777778, 0.0, 0.0, 0.9066666666666666, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.008888888888888889, 0.013333333333333334, 0.013333333333333334, 0.013333333333333334, 0.013333333333333334, 0.013333333333333334, 0.7155555555555555, 0.7866666666666666, 0.9288888888888889, 0.7422222222222222, 0.7111111111111111, 0.013333333333333334, 0.017777777777777778, 0.9377777777777778, 0.9111111111111111, 0.013333333333333334, 0.6533333333333333, 0.013333333333333334, 0.013333333333333334, 0.017777777777777778, 0.017777777777777778, 0.017777777777777778, 0.022222222222222223, 0.02666666666666667, 0.02666666666666667, 0.02666666666666667, 0.04888888888888889, 0.07111111111111111, 0.07555555555555556, 0.09333333333333334, 0.1288888888888889, 0.18222222222222223, 0.2222222222222222, 0.31555555555555553, 0.48444444444444446], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/CBX7_C.gap.json b/pfam_gap_rates/CBX7_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..16a4195737af8a1c875521d68a49fbcaec18c46c
--- /dev/null
+++ b/pfam_gap_rates/CBX7_C.gap.json
@@ -0,0 +1 @@
+{"family": "CBX7_C", "n_seqs": 132, "length": 35, "gap_rates": [0.6212121212121212, 0.2727272727272727, 0.1590909090909091, 0.12121212121212122, 0.07575757575757576, 0.2196969696969697, 0.09090909090909091, 0.25, 0.9242424242424242, 0.18181818181818182, 0.75, 0.11363636363636363, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.007575757575757576, 0.08333333333333333, 0.5606060606060606], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/CCB2_CCB4.gap.json b/pfam_gap_rates/CCB2_CCB4.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a93ab8f9b9632641708cb1453831fb38185d13bd
--- /dev/null
+++ b/pfam_gap_rates/CCB2_CCB4.gap.json
@@ -0,0 +1 @@
+{"family": "CCB2_CCB4", "n_seqs": 146, "length": 247, "gap_rates": [0.3219178082191781, 0.2191780821917808, 0.17123287671232876, 0.15753424657534246, 0.15753424657534246, 0.15753424657534246, 0.14383561643835616, 0.14383561643835616, 0.14383561643835616, 0.136986301369863, 0.136986301369863, 0.136986301369863, 0.136986301369863, 0.136986301369863, 0.136986301369863, 0.136986301369863, 0.136986301369863, 0.136986301369863, 0.6095890410958904, 0.726027397260274, 0.773972602739726, 0.7671232876712328, 0.7123287671232876, 0.14383561643835616, 0.136986301369863, 0.136986301369863, 0.13013698630136986, 0.13013698630136986, 0.13013698630136986, 0.11643835616438356, 0.9383561643835616, 0.1095890410958904, 0.1095890410958904, 0.1095890410958904, 0.1095890410958904, 0.10273972602739725, 0.10273972602739725, 0.10273972602739725, 0.10273972602739725, 0.10273972602739725, 0.10273972602739725, 0.10273972602739725, 0.10273972602739725, 0.10273972602739725, 0.10273972602739725, 0.10273972602739725, 0.10273972602739725, 0.10273972602739725, 0.10273972602739725, 0.10273972602739725, 0.10273972602739725, 0.10273972602739725, 0.10273972602739725, 0.1095890410958904, 0.1095890410958904, 0.10273972602739725, 0.10273972602739725, 0.0958904109589041, 0.821917808219178, 0.0958904109589041, 0.0958904109589041, 0.0958904109589041, 0.9315068493150684, 0.9383561643835616, 0.9315068493150684, 0.0958904109589041, 0.0958904109589041, 0.1095890410958904, 0.1095890410958904, 0.0958904109589041, 0.0958904109589041, 0.08904109589041095, 0.08904109589041095, 0.7876712328767124, 0.7328767123287672, 0.08904109589041095, 0.08904109589041095, 0.08904109589041095, 0.08904109589041095, 0.08904109589041095, 0.08904109589041095, 0.08904109589041095, 0.08904109589041095, 0.0958904109589041, 0.08904109589041095, 0.08904109589041095, 0.0821917808219178, 0.0821917808219178, 0.0821917808219178, 0.0821917808219178, 0.08904109589041095, 0.08904109589041095, 0.0821917808219178, 0.0821917808219178, 0.08904109589041095, 0.0958904109589041, 0.0958904109589041, 0.0958904109589041, 0.0958904109589041, 0.0958904109589041, 0.0958904109589041, 0.0958904109589041, 0.08904109589041095, 0.08904109589041095, 0.08904109589041095, 0.08904109589041095, 0.08904109589041095, 0.08904109589041095, 0.08904109589041095, 0.08904109589041095, 0.0958904109589041, 0.08904109589041095, 0.0958904109589041, 0.0958904109589041, 0.0958904109589041, 0.0958904109589041, 0.1095890410958904, 0.1095890410958904, 0.21232876712328766, 0.08904109589041095, 0.08904109589041095, 0.08904109589041095, 0.08904109589041095, 0.08904109589041095, 0.08904109589041095, 0.08904109589041095, 0.08904109589041095, 0.14383561643835616, 0.11643835616438356, 0.678082191780822, 0.7465753424657534, 0.7671232876712328, 0.7876712328767124, 0.815068493150685, 0.910958904109589, 0.8013698630136986, 0.7671232876712328, 0.7602739726027398, 0.7328767123287672, 0.6506849315068494, 0.589041095890411, 0.0821917808219178, 0.07534246575342465, 0.07534246575342465, 0.0684931506849315, 0.8013698630136986, 0.8082191780821918, 0.8013698630136986, 0.0684931506849315, 0.0547945205479452, 0.06164383561643835, 0.0547945205479452, 0.06164383561643835, 0.0547945205479452, 0.06164383561643835, 0.2191780821917808, 0.2191780821917808, 0.21232876712328766, 0.910958904109589, 0.9246575342465754, 0.9383561643835616, 0.9452054794520548, 0.9383561643835616, 0.9315068493150684, 0.9178082191780822, 0.910958904109589, 0.0684931506849315, 0.0547945205479452, 0.0547945205479452, 0.0547945205479452, 0.0547945205479452, 0.0547945205479452, 0.0547945205479452, 0.0547945205479452, 0.0684931506849315, 0.7876712328767124, 0.7808219178082192, 0.06164383561643835, 0.06164383561643835, 0.0547945205479452, 0.0547945205479452, 0.0547945205479452, 0.06164383561643835, 0.06164383561643835, 0.06164383561643835, 0.7876712328767124, 0.815068493150685, 0.7945205479452054, 0.7191780821917808, 0.06164383561643835, 0.06164383561643835, 0.06164383561643835, 0.06164383561643835, 0.06164383561643835, 0.06164383561643835, 0.06164383561643835, 0.06164383561643835, 0.0684931506849315, 0.07534246575342465, 0.07534246575342465, 0.07534246575342465, 0.07534246575342465, 0.07534246575342465, 0.0821917808219178, 0.7602739726027398, 0.7602739726027398, 0.8013698630136986, 0.8082191780821918, 0.8424657534246576, 0.9246575342465754, 0.8493150684931506, 0.8287671232876712, 0.8082191780821918, 0.7945205479452054, 0.7602739726027398, 0.7123287671232876, 0.0958904109589041, 0.10273972602739725, 0.0958904109589041, 0.0958904109589041, 0.08904109589041095, 0.08904109589041095, 0.08904109589041095, 0.08904109589041095, 0.08904109589041095, 0.08904109589041095, 0.08904109589041095, 0.0958904109589041, 0.0958904109589041, 0.0958904109589041, 0.0958904109589041, 0.0958904109589041, 0.0958904109589041, 0.0958904109589041, 0.0958904109589041, 0.10273972602739725, 0.10273972602739725, 0.1095890410958904, 0.1095890410958904, 0.1232876712328767, 0.13013698630136986, 0.13013698630136986, 0.13013698630136986, 0.14383561643835616, 0.1643835616438356, 0.18493150684931506, 0.22602739726027396], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/CCG.gap.json b/pfam_gap_rates/CCG.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f7014677c75d4fbb3e2bc2dc761ab273a8d7c847
--- /dev/null
+++ b/pfam_gap_rates/CCG.gap.json
@@ -0,0 +1 @@
+{"family": "CCG", "n_seqs": 5000, "length": 101, "gap_rates": [0.3622, 0.1486, 0.0878, 0.0742, 0.066, 0.063, 0.062, 0.4316, 0.9156, 0.099, 0.073, 0.0558, 0.0492, 0.0482, 0.6028, 0.8906, 0.9104, 0.8948, 0.8782, 0.568, 0.044, 0.0318, 0.0202, 0.0202, 0.0208, 0.021, 0.0316, 0.0204, 0.0152, 0.0134, 0.0128, 0.1162, 0.0492, 0.035, 0.0168, 0.0122, 0.0098, 0.008, 0.0068, 0.0076, 0.0422, 0.0466, 0.5662, 0.2162, 0.1614, 0.0092, 0.0042, 0.002, 0.0018, 0.0018, 0.0018, 0.002, 0.0018, 0.0018, 0.0122, 0.0046, 0.004, 0.003, 0.0026, 0.063, 0.8882, 0.9218, 0.557, 0.019, 0.0178, 0.0164, 0.0098, 0.0096, 0.0104, 0.0112, 0.0104, 0.0114, 0.012, 0.0128, 0.0142, 0.0142, 0.0164, 0.018, 0.8884, 0.9368, 0.912, 0.8856, 0.1248, 0.946, 0.1284, 0.0328, 0.0252, 0.054, 0.0234, 0.024, 0.0234, 0.024, 0.0246, 0.029, 0.0396, 0.059, 0.0674, 0.0882, 0.1364, 0.188, 0.7394], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/CD20.gap.json b/pfam_gap_rates/CD20.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..32826be388be087a13487fe9ad3c6864b04220b2
--- /dev/null
+++ b/pfam_gap_rates/CD20.gap.json
@@ -0,0 +1 @@
+{"family": "CD20", "n_seqs": 386, "length": 177, "gap_rates": [0.582901554404145, 0.29015544041450775, 0.23834196891191708, 0.20984455958549222, 0.18652849740932642, 0.17875647668393782, 0.15284974093264247, 0.13730569948186527, 0.13730569948186527, 0.13212435233160622, 0.13212435233160622, 0.13212435233160622, 0.12176165803108809, 0.11658031088082901, 0.11139896373056994, 0.11398963730569948, 0.10880829015544041, 0.12953367875647667, 0.11917098445595854, 0.11658031088082901, 0.12435233160621761, 0.11917098445595854, 0.11398963730569948, 0.11658031088082901, 0.11398963730569948, 0.10880829015544041, 0.5647668393782384, 0.7409326424870466, 0.8652849740932642, 0.9093264248704663, 0.8963730569948186, 0.8186528497409327, 0.6398963730569949, 0.5155440414507773, 0.25647668393782386, 0.11917098445595854, 0.11398963730569948, 0.10880829015544041, 0.10621761658031088, 0.09585492227979274, 0.09326424870466321, 0.09067357512953368, 0.09067357512953368, 0.08808290155440414, 0.09067357512953368, 0.08290155440414508, 0.08031088082901554, 0.07772020725388601, 0.06994818652849741, 0.08290155440414508, 0.08031088082901554, 0.08808290155440414, 0.09067357512953368, 0.09067357512953368, 0.09067357512953368, 0.09067357512953368, 0.09067357512953368, 0.09067357512953368, 0.09326424870466321, 0.09585492227979274, 0.09326424870466321, 0.09326424870466321, 0.09067357512953368, 0.09326424870466321, 0.8782383419689119, 0.9326424870466321, 0.9326424870466321, 0.8005181347150259, 0.08808290155440414, 0.09067357512953368, 0.08031088082901554, 0.05699481865284974, 0.04922279792746114, 0.046632124352331605, 0.046632124352331605, 0.04922279792746114, 0.05181347150259067, 0.05181347150259067, 0.04922279792746114, 0.05181347150259067, 0.054404145077720206, 0.054404145077720206, 0.054404145077720206, 0.054404145077720206, 0.054404145077720206, 0.05958549222797927, 0.06217616580310881, 0.06217616580310881, 0.06217616580310881, 0.06217616580310881, 0.06217616580310881, 0.06994818652849741, 0.06994818652849741, 0.07512953367875648, 0.08031088082901554, 0.07512953367875648, 0.08031088082901554, 0.12176165803108809, 0.14248704663212436, 0.16839378238341968, 0.18134715025906736, 0.20207253886010362, 0.21761658031088082, 0.22279792746113988, 0.23834196891191708, 0.25647668393782386, 0.5207253886010362, 0.5051813471502591, 0.5077720207253886, 0.5103626943005182, 0.533678756476684, 0.5362694300518135, 0.5984455958549223, 0.6709844559585493, 0.7046632124352331, 0.8367875647668394, 0.8704663212435233, 0.9196891191709845, 0.8497409326424871, 0.7616580310880829, 0.6813471502590673, 0.6632124352331606, 0.5440414507772021, 0.538860103626943, 0.533678756476684, 0.5207253886010362, 0.5155440414507773, 0.5051813471502591, 0.5077720207253886, 0.4896373056994819, 0.4844559585492228, 0.4481865284974093, 0.4274611398963731, 0.4119170984455959, 0.40414507772020725, 0.38860103626943004, 0.37823834196891193, 0.37305699481865284, 0.3756476683937824, 0.38082901554404147, 0.37823834196891193, 0.3756476683937824, 0.3756476683937824, 0.37823834196891193, 0.38341968911917096, 0.3911917098445596, 0.3963730569948187, 0.6088082901554405, 0.5906735751295337, 0.5621761658031088, 0.39378238341968913, 0.3756476683937824, 0.3756476683937824, 0.37305699481865284, 0.3756476683937824, 0.37305699481865284, 0.37305699481865284, 0.37305699481865284, 0.37305699481865284, 0.37305699481865284, 0.3756476683937824, 0.37823834196891193, 0.37823834196891193, 0.37823834196891193, 0.37823834196891193, 0.3911917098445596, 0.3963730569948187, 0.3963730569948187, 0.39896373056994816, 0.4015544041450777, 0.4015544041450777, 0.40414507772020725, 0.4119170984455959, 0.42487046632124353, 0.44559585492227977, 0.5310880829015544, 0.6269430051813472], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/CD36.gap.json b/pfam_gap_rates/CD36.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..497757e94abd1cc8e9d35bdf89fee2523f81b120
--- /dev/null
+++ b/pfam_gap_rates/CD36.gap.json
@@ -0,0 +1 @@
+{"family": "CD36", "n_seqs": 802, "length": 527, "gap_rates": [0.9164588528678305, 0.6970074812967582, 0.6197007481296758, 0.5673316708229427, 0.543640897755611, 0.5399002493765586, 0.5536159600997507, 0.5286783042394015, 0.5249376558603491, 0.5174563591022444, 0.5174563591022444, 0.5224438902743143, 0.5149625935162094, 0.513715710723192, 0.5174563591022444, 0.6246882793017456, 0.9002493765586035, 0.6708229426433915, 0.5748129675810474, 0.5149625935162094, 0.543640897755611, 0.5311720698254364, 0.5211970074812967, 0.5374064837905237, 0.486284289276808, 0.48753117206982544, 0.4837905236907731, 0.4800498753117207, 0.4713216957605985, 0.6870324189526185, 0.4476309226932668, 0.43266832917705733, 0.4226932668329177, 0.41895261845386533, 0.41895261845386533, 0.4164588528678304, 0.942643391521197, 0.4177057356608479, 0.4164588528678304, 0.41271820448877805, 0.4077306733167082, 0.40648379052369077, 0.40399002493765584, 0.39526184538653364, 0.39526184538653364, 0.39526184538653364, 0.39276807980049877, 0.39276807980049877, 0.385286783042394, 0.38902743142144636, 0.3827930174563591, 0.3740648379052369, 0.3690773067331671, 0.3566084788029925, 0.35037406483790523, 0.35037406483790523, 0.35037406483790523, 0.3491271820448878, 0.3491271820448878, 0.3491271820448878, 0.3478802992518703, 0.34538653366583544, 0.34538653366583544, 0.34663341645885287, 0.34663341645885287, 0.34663341645885287, 0.34538653366583544, 0.3478802992518703, 0.8915211970074813, 0.36034912718204487, 0.42768079800498754, 0.5399002493765586, 0.34538653366583544, 0.34538653366583544, 0.34413965087281795, 0.34413965087281795, 0.341645885286783, 0.34413965087281795, 0.341645885286783, 0.341645885286783, 0.34413965087281795, 0.34413965087281795, 0.3428927680798005, 0.341645885286783, 0.3403990024937656, 0.341645885286783, 0.3553615960099751, 0.3516209476309227, 0.35286783042394015, 0.35286783042394015, 0.3541147132169576, 0.3541147132169576, 0.3553615960099751, 0.3566084788029925, 0.3541147132169576, 0.35037406483790523, 0.3541147132169576, 0.37531172069825436, 0.6496259351620948, 0.3640897755610973, 0.3516209476309227, 0.3516209476309227, 0.3491271820448878, 0.34663341645885287, 0.3478802992518703, 0.3478802992518703, 0.3491271820448878, 0.34663341645885287, 0.3491271820448878, 0.3491271820448878, 0.34663341645885287, 0.34538653366583544, 0.34538653366583544, 0.34538653366583544, 0.3541147132169576, 0.3491271820448878, 0.3491271820448878, 0.3478802992518703, 0.3478802992518703, 0.3478802992518703, 0.3865336658354115, 0.655860349127182, 0.5960099750623441, 0.5748129675810474, 0.34538653366583544, 0.341645885286783, 0.341645885286783, 0.341645885286783, 0.3428927680798005, 0.3403990024937656, 0.33915211970074816, 0.33790523690773067, 0.33790523690773067, 0.34413965087281795, 0.34538653366583544, 0.34663341645885287, 0.7394014962593516, 0.6957605985037406, 0.7119700748129676, 0.7119700748129676, 0.6920199501246883, 0.7032418952618454, 0.7057356608478803, 0.8940149625935162, 0.9276807980049875, 0.9114713216957606, 0.8840399002493765, 0.48129675810473815, 0.5174563591022444, 0.5149625935162094, 0.5037406483790524, 0.4912718204488778, 0.43516209476309226, 0.7094763092269327, 0.9102244389027432, 0.6508728179551122, 0.37032418952618457, 0.3690773067331671, 0.3553615960099751, 0.35037406483790523, 0.35286783042394015, 0.3653366583541147, 0.35286783042394015, 0.3541147132169576, 0.5211970074812967, 0.36658354114713215, 0.36783042394014964, 0.3690773067331671, 0.4513715710723192, 0.442643391521197, 0.4389027431421446, 0.4226932668329177, 0.4488778054862843, 0.36658354114713215, 0.940149625935162, 0.35037406483790523, 0.3478802992518703, 0.3428927680798005, 0.341645885286783, 0.33915211970074816, 0.341645885286783, 0.33915211970074816, 0.3403990024937656, 0.3428927680798005, 0.3428927680798005, 0.3428927680798005, 0.3428927680798005, 0.341645885286783, 0.6945137157107232, 0.36783042394014964, 0.3491271820448878, 0.36159600997506236, 0.3566084788029925, 0.3478802992518703, 0.9339152119700748, 0.9413965087281796, 0.940149625935162, 0.9276807980049875, 0.3478802992518703, 0.35286783042394015, 0.35286783042394015, 0.3541147132169576, 0.3653366583541147, 0.9239401496259352, 0.3877805486284289, 0.44389027431421446, 0.4488778054862843, 0.44139650872817954, 0.4613466334164589, 0.470074812967581, 0.47880299251870323, 0.6496259351620948, 0.7905236907730673, 0.8615960099750624, 0.8877805486284289, 0.9201995012468828, 0.9438902743142145, 0.9364089775561097, 0.9089775561097256, 0.8753117206982544, 0.8403990024937655, 0.7693266832917706, 0.5897755610972568, 0.43017456359102246, 0.4164588528678304, 0.3802992518703242, 0.37531172069825436, 0.37032418952618457, 0.36159600997506236, 0.3566084788029925, 0.3566084788029925, 0.36034912718204487, 0.3566084788029925, 0.37531172069825436, 0.36783042394014964, 0.3566084788029925, 0.36658354114713215, 0.3628428927680798, 0.36658354114713215, 0.3628428927680798, 0.9039900249376559, 0.8528678304239401, 0.36658354114713215, 0.35910224438902744, 0.3653366583541147, 0.3516209476309227, 0.341645885286783, 0.3428927680798005, 0.34538653366583544, 0.3553615960099751, 0.3491271820448878, 0.3491271820448878, 0.3478802992518703, 0.3478802992518703, 0.34538653366583544, 0.341645885286783, 0.34413965087281795, 0.341645885286783, 0.34663341645885287, 0.3428927680798005, 0.341645885286783, 0.341645885286783, 0.3403990024937656, 0.33915211970074816, 0.33915211970074816, 0.3403990024937656, 0.3428927680798005, 0.34663341645885287, 0.42643391521197005, 0.6259351620947631, 0.9339152119700748, 0.9376558603491272, 0.9463840399002493, 0.9488778054862843, 0.9451371571072319, 0.9339152119700748, 0.8902743142144638, 0.38902743142144636, 0.3940149625935162, 0.39900249376558605, 0.3640897755610973, 0.9239401496259352, 0.9389027431421446, 0.9476309226932669, 0.9326683291770573, 0.9201995012468828, 0.35910224438902744, 0.3628428927680798, 0.6733167082294265, 0.3740648379052369, 0.36159600997506236, 0.35910224438902744, 0.3566084788029925, 0.35286783042394015, 0.92643391521197, 0.35037406483790523, 0.35037406483790523, 0.928927680798005, 0.35286783042394015, 0.35910224438902744, 0.3541147132169576, 0.35286783042394015, 0.35286783042394015, 0.35286783042394015, 0.35286783042394015, 0.35286783042394015, 0.9077306733167082, 0.3491271820448878, 0.3478802992518703, 0.3827930174563591, 0.3491271820448878, 0.3478802992518703, 0.34663341645885287, 0.34663341645885287, 0.3428927680798005, 0.34413965087281795, 0.341645885286783, 0.341645885286783, 0.3403990024937656, 0.341645885286783, 0.33915211970074816, 0.33915211970074816, 0.3316708229426434, 0.3316708229426434, 0.3341645885286783, 0.3329177057356609, 0.3341645885286783, 0.33541147132169574, 0.3341645885286783, 0.33541147132169574, 0.33665835411471323, 0.8877805486284289, 0.3329177057356609, 0.33665835411471323, 0.33541147132169574, 0.3316708229426434, 0.3316708229426434, 0.3316708229426434, 0.33042394014962595, 0.32917705735660846, 0.3254364089775561, 0.3266832917705736, 0.3254364089775561, 0.3254364089775561, 0.3266832917705736, 0.3266832917705736, 0.3266832917705736, 0.385286783042394, 0.38154613466334164, 0.3790523690773067, 0.3329177057356609, 0.33541147132169574, 0.3940149625935162, 0.39650872817955113, 0.39650872817955113, 0.4613466334164589, 0.46633416458852867, 0.39900249376558605, 0.3740648379052369, 0.39027431421446385, 0.36159600997506236, 0.3491271820448878, 0.3541147132169576, 0.3553615960099751, 0.36658354114713215, 0.5024937655860349, 0.7468827930174564, 0.8690773067331671, 0.9064837905236908, 0.9226932668329177, 0.9463840399002493, 0.9438902743142145, 0.9102244389027432, 0.9014962593516209, 0.8216957605985037, 0.7593516209476309, 0.5822942643391521, 0.4763092269326683, 0.5099750623441397, 0.3740648379052369, 0.36658354114713215, 0.3403990024937656, 0.33541147132169574, 0.32917705735660846, 0.3266832917705736, 0.3254364089775561, 0.3254364089775561, 0.3266832917705736, 0.32917705735660846, 0.327930174563591, 0.327930174563591, 0.3254364089775561, 0.9214463840399002, 0.9226932668329177, 0.8940149625935162, 0.46508728179551123, 0.327930174563591, 0.32418952618453867, 0.32418952618453867, 0.32169576059850374, 0.3204488778054863, 0.3229426433915212, 0.3254364089775561, 0.327930174563591, 0.327930174563591, 0.3266832917705736, 0.3254364089775561, 0.32169576059850374, 0.3229426433915212, 0.3229426433915212, 0.32169576059850374, 0.32418952618453867, 0.32917705735660846, 0.3229426433915212, 0.32169576059850374, 0.3229426433915212, 0.3204488778054863, 0.3229426433915212, 0.327930174563591, 0.32917705735660846, 0.327930174563591, 0.32917705735660846, 0.8902743142144638, 0.327930174563591, 0.327930174563591, 0.3491271820448878, 0.33541147132169574, 0.327930174563591, 0.3266832917705736, 0.3266832917705736, 0.3254364089775561, 0.327930174563591, 0.32169576059850374, 0.3192019950124688, 0.3204488778054863, 0.3167082294264339, 0.3179551122194514, 0.32418952618453867, 0.3428927680798005, 0.34538653366583544, 0.3478802992518703, 0.3491271820448878, 0.35037406483790523, 0.35286783042394015, 0.3541147132169576, 0.3541147132169576, 0.3541147132169576, 0.3541147132169576, 0.35286783042394015, 0.35286783042394015, 0.3516209476309227, 0.3516209476309227, 0.3516209476309227, 0.35037406483790523, 0.3553615960099751, 0.3566084788029925, 0.3553615960099751, 0.385286783042394, 0.39526184538653364, 0.38154613466334164, 0.38403990024937656, 0.3778054862842893, 0.37032418952618457, 0.9226932668329177, 0.3740648379052369, 0.37032418952618457, 0.3690773067331671, 0.36783042394014964, 0.36658354114713215, 0.7917705735660848, 0.4002493765586035, 0.36658354114713215, 0.36658354114713215, 0.36783042394014964, 0.36783042394014964, 0.36783042394014964, 0.36783042394014964, 0.36783042394014964, 0.36783042394014964, 0.36783042394014964, 0.371571072319202, 0.9276807980049875, 0.8553615960099751, 0.38403990024937656, 0.4538653366583541, 0.4002493765586035, 0.3915211970074813, 0.3915211970074813, 0.39027431421446385, 0.3915211970074813, 0.3915211970074813, 0.39276807980049877, 0.39526184538653364, 0.39526184538653364, 0.39650872817955113, 0.5236907730673317, 0.44139650872817954, 0.4002493765586035, 0.39900249376558605, 0.40523690773067333, 0.4014962593516209, 0.4027431421446384, 0.4027431421446384, 0.4114713216957606, 0.40648379052369077, 0.40523690773067333, 0.4077306733167082, 0.4102244389027431, 0.415211970074813, 0.4139650872817955, 0.4164588528678304, 0.41271820448877805, 0.4102244389027431, 0.41271820448877805, 0.41271820448877805, 0.415211970074813, 0.4177057356608479, 0.4239401496259352, 0.42144638403990026, 0.4226932668329177, 0.4251870324189526, 0.428927680798005, 0.442643391521197, 0.4613466334164589, 0.5012468827930174, 0.5760598503740648, 0.729426433915212], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/CDC37_M.gap.json b/pfam_gap_rates/CDC37_M.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..3b1dddd0b891c1b07ee1f7a672809941873e6492
--- /dev/null
+++ b/pfam_gap_rates/CDC37_M.gap.json
@@ -0,0 +1 @@
+{"family": "CDC37_M", "n_seqs": 268, "length": 122, "gap_rates": [0.4701492537313433, 0.1791044776119403, 0.1455223880597015, 0.13432835820895522, 0.11194029850746269, 0.10074626865671642, 0.48507462686567165, 0.45149253731343286, 0.05970149253731343, 0.05223880597014925, 0.03731343283582089, 0.026119402985074626, 0.018656716417910446, 0.014925373134328358, 0.014925373134328358, 0.014925373134328358, 0.014925373134328358, 0.014925373134328358, 0.011194029850746268, 0.011194029850746268, 0.011194029850746268, 0.011194029850746268, 0.011194029850746268, 0.007462686567164179, 0.007462686567164179, 0.9291044776119403, 0.007462686567164179, 0.007462686567164179, 0.007462686567164179, 0.007462686567164179, 0.007462686567164179, 0.007462686567164179, 0.007462686567164179, 0.007462686567164179, 0.007462686567164179, 0.007462686567164179, 0.007462686567164179, 0.007462686567164179, 0.007462686567164179, 0.007462686567164179, 0.007462686567164179, 0.007462686567164179, 0.0037313432835820895, 0.0037313432835820895, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0037313432835820895, 0.007462686567164179, 0.007462686567164179, 0.011194029850746268, 0.014925373134328358, 0.007462686567164179, 0.007462686567164179, 0.011194029850746268, 0.011194029850746268, 0.011194029850746268, 0.8768656716417911, 0.9477611940298507, 0.9253731343283582, 0.8768656716417911, 0.47761194029850745, 0.47388059701492535, 0.4701492537313433, 0.4701492537313433, 0.47388059701492535, 0.4626865671641791, 0.014925373134328358, 0.011194029850746268, 0.4664179104477612, 0.014925373134328358, 0.011194029850746268, 0.011194029850746268, 0.011194029850746268, 0.011194029850746268, 0.011194029850746268, 0.011194029850746268, 0.011194029850746268, 0.011194029850746268, 0.014925373134328358, 0.026119402985074626, 0.022388059701492536, 0.033582089552238806, 0.029850746268656716, 0.029850746268656716, 0.07835820895522388, 0.055970149253731345, 0.029850746268656716, 0.029850746268656716, 0.029850746268656716, 0.029850746268656716, 0.029850746268656716, 0.033582089552238806, 0.029850746268656716, 0.029850746268656716, 0.029850746268656716, 0.029850746268656716, 0.029850746268656716, 0.029850746268656716, 0.029850746268656716, 0.029850746268656716, 0.033582089552238806, 0.03731343283582089, 0.07462686567164178, 0.08582089552238806, 0.08955223880597014, 0.09328358208955224, 0.09328358208955224, 0.1044776119402985, 0.12686567164179105, 0.16417910447761194, 0.21641791044776118, 0.26119402985074625, 0.5186567164179104], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/CDP-OH_P_transf.gap.json b/pfam_gap_rates/CDP-OH_P_transf.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..9a625e7f213528574645e4e81a0370b81409a58f
--- /dev/null
+++ b/pfam_gap_rates/CDP-OH_P_transf.gap.json
@@ -0,0 +1 @@
+{"family": "CDP-OH_P_transf", "n_seqs": 5000, "length": 83, "gap_rates": [0.6832, 0.1526, 0.0748, 0.0626, 0.0366, 0.0322, 0.0306, 0.0284, 0.027, 0.026, 0.0256, 0.0248, 0.0252, 0.0558, 0.0538, 0.059, 0.0568, 0.0392, 0.1346, 0.2192, 0.119, 0.3096, 0.1548, 0.1014, 0.1148, 0.0702, 0.4742, 0.5804, 0.701, 0.7606, 0.8166, 0.8988, 0.9182, 0.936, 0.9272, 0.9108, 0.8362, 0.7944, 0.7368, 0.6554, 0.5318, 0.431, 0.0782, 0.0246, 0.017, 0.0112, 0.0094, 0.0082, 0.0116, 0.0088, 0.007, 0.004, 0.0034, 0.0026, 0.003, 0.083, 0.001, 0.0002, 0.0002, 0.0002, 0.0002, 0.0002, 0.0002, 0.0002, 0.0004, 0.0008, 0.0008, 0.0044, 0.0016, 0.0682, 0.0078, 0.0082, 0.9342, 0.0104, 0.011, 0.0116, 0.0122, 0.0134, 0.0134, 0.0164, 0.0222, 0.0378, 0.0454], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/CDT1.gap.json b/pfam_gap_rates/CDT1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..fd2dedc1e3cc7c2e50c986699d3555706220e5e6
--- /dev/null
+++ b/pfam_gap_rates/CDT1.gap.json
@@ -0,0 +1 @@
+{"family": "CDT1", "n_seqs": 291, "length": 235, "gap_rates": [0.5154639175257731, 0.2542955326460481, 0.24398625429553264, 0.18213058419243985, 0.16494845360824742, 0.140893470790378, 0.11683848797250859, 0.09621993127147767, 0.08934707903780069, 0.08934707903780069, 0.08247422680412371, 0.08247422680412371, 0.08247422680412371, 0.08247422680412371, 0.08247422680412371, 0.08247422680412371, 0.08934707903780069, 0.0859106529209622, 0.0859106529209622, 0.07216494845360824, 0.07216494845360824, 0.06872852233676977, 0.07216494845360824, 0.07216494845360824, 0.06529209621993128, 0.044673539518900345, 0.044673539518900345, 0.8934707903780069, 0.037800687285223365, 0.8831615120274914, 0.037800687285223365, 0.037800687285223365, 0.037800687285223365, 0.037800687285223365, 0.037800687285223365, 0.037800687285223365, 0.037800687285223365, 0.037800687285223365, 0.041237113402061855, 0.037800687285223365, 0.037800687285223365, 0.037800687285223365, 0.037800687285223365, 0.037800687285223365, 0.037800687285223365, 0.037800687285223365, 0.03436426116838488, 0.03436426116838488, 0.03436426116838488, 0.030927835051546393, 0.030927835051546393, 0.030927835051546393, 0.027491408934707903, 0.027491408934707903, 0.027491408934707903, 0.027491408934707903, 0.027491408934707903, 0.027491408934707903, 0.027491408934707903, 0.027491408934707903, 0.030927835051546393, 0.030927835051546393, 0.030927835051546393, 0.030927835051546393, 0.030927835051546393, 0.030927835051546393, 0.030927835051546393, 0.9278350515463918, 0.9312714776632303, 0.9381443298969072, 0.9347079037800687, 0.9278350515463918, 0.9278350515463918, 0.2611683848797251, 0.27835051546391754, 0.2508591065292096, 0.40893470790378006, 0.3333333333333333, 0.3333333333333333, 0.32646048109965636, 0.30927835051546393, 0.6735395189003437, 0.4570446735395189, 0.4570446735395189, 0.42955326460481097, 0.35738831615120276, 0.37800687285223367, 0.44329896907216493, 0.4845360824742268, 0.7594501718213058, 0.6804123711340206, 0.38831615120274915, 0.3745704467353952, 0.38831615120274915, 0.38831615120274915, 0.3917525773195876, 0.3917525773195876, 0.3951890034364261, 0.9347079037800687, 0.4329896907216495, 0.5051546391752577, 0.4845360824742268, 0.5154639175257731, 0.4879725085910653, 0.5292096219931272, 0.5120274914089347, 0.7766323024054983, 0.7766323024054983, 0.7869415807560137, 0.7903780068728522, 0.8178694158075601, 0.8281786941580757, 0.8281786941580757, 0.8350515463917526, 0.8419243986254296, 0.845360824742268, 0.8487972508591065, 0.8556701030927835, 0.8625429553264605, 0.8694158075601375, 0.872852233676976, 0.8831615120274914, 0.9072164948453608, 0.9140893470790378, 0.9209621993127147, 0.9243986254295533, 0.9415807560137457, 0.9450171821305842, 0.9450171821305842, 0.9450171821305842, 0.9450171821305842, 0.9450171821305842, 0.9312714776632303, 0.9209621993127147, 0.9175257731958762, 0.9140893470790378, 0.8934707903780069, 0.8762886597938144, 0.8694158075601375, 0.865979381443299, 0.8556701030927835, 0.8487972508591065, 0.845360824742268, 0.8419243986254296, 0.8384879725085911, 0.8350515463917526, 0.8281786941580757, 0.8178694158075601, 0.8109965635738832, 0.7903780068728522, 0.7800687285223368, 0.7766323024054983, 0.7731958762886598, 0.6426116838487973, 0.7731958762886598, 0.7491408934707904, 0.7216494845360825, 0.6907216494845361, 0.6494845360824743, 0.6288659793814433, 0.6219931271477663, 0.5807560137457045, 0.5773195876288659, 0.5532646048109966, 0.5326460481099656, 0.5085910652920962, 0.48109965635738833, 0.47766323024054985, 0.4845360824742268, 0.4742268041237113, 0.48109965635738833, 0.4845360824742268, 0.48109965635738833, 0.5017182130584192, 0.47766323024054985, 0.47079037800687284, 0.47766323024054985, 0.4742268041237113, 0.48109965635738833, 0.4845360824742268, 0.4879725085910653, 0.4879725085910653, 0.49140893470790376, 0.49140893470790376, 0.5051546391752577, 0.5154639175257731, 0.5154639175257731, 0.5326460481099656, 0.5360824742268041, 0.563573883161512, 0.5670103092783505, 0.5979381443298969, 0.5945017182130584, 0.6013745704467354, 0.6013745704467354, 0.6013745704467354, 0.6013745704467354, 0.6013745704467354, 0.6013745704467354, 0.6013745704467354, 0.6185567010309279, 0.6116838487972509, 0.6426116838487973, 0.6391752577319587, 0.9484536082474226, 0.9243986254295533, 0.6219931271477663, 0.6185567010309279, 0.6116838487972509, 0.8247422680412371, 0.6151202749140894, 0.6151202749140894, 0.6151202749140894, 0.6254295532646048, 0.6185567010309279, 0.6219931271477663, 0.6219931271477663, 0.6219931271477663, 0.6219931271477663, 0.6219931271477663, 0.6219931271477663, 0.6219931271477663, 0.6219931271477663, 0.6219931271477663, 0.9381443298969072, 0.6219931271477663, 0.6391752577319587, 0.6391752577319587, 0.6391752577319587, 0.6391752577319587, 0.6391752577319587, 0.6494845360824743, 0.6529209621993127, 0.6597938144329897, 0.6769759450171822], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/CDT1_C.gap.json b/pfam_gap_rates/CDT1_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..befff68cc88e43a2a5f042bb9e72dae3c7ae9d74
--- /dev/null
+++ b/pfam_gap_rates/CDT1_C.gap.json
@@ -0,0 +1 @@
+{"family": "CDT1_C", "n_seqs": 283, "length": 121, "gap_rates": [0.5795053003533569, 0.31095406360424027, 0.17667844522968199, 0.1519434628975265, 0.14840989399293286, 0.14840989399293286, 0.13780918727915195, 0.127208480565371, 0.12367491166077739, 0.12014134275618374, 0.10954063604240283, 0.10954063604240283, 0.10954063604240283, 0.14487632508833923, 0.13427561837455831, 0.13074204946996468, 0.12367491166077739, 0.8798586572438163, 0.8975265017667845, 0.9222614840989399, 0.9363957597173145, 0.9469964664310954, 0.9399293286219081, 0.9363957597173145, 0.9081272084805654, 0.8833922261484098, 0.8551236749116607, 0.12014134275618374, 0.17314487632508835, 0.1413427561837456, 0.14840989399293286, 0.1872791519434629, 0.14840989399293286, 0.11307420494699646, 0.08833922261484099, 0.06713780918727916, 0.06713780918727916, 0.04946996466431095, 0.05653710247349823, 0.053003533568904596, 0.038869257950530034, 0.04240282685512368, 0.045936395759717315, 0.024734982332155476, 0.02120141342756184, 0.02120141342756184, 0.0176678445229682, 0.014134275618374558, 0.014134275618374558, 0.014134275618374558, 0.014134275618374558, 0.014134275618374558, 0.014134275618374558, 0.014134275618374558, 0.01060070671378092, 0.01060070671378092, 0.007067137809187279, 0.007067137809187279, 0.7455830388692579, 0.7703180212014135, 0.833922261484099, 0.8586572438162544, 0.8763250883392226, 0.9328621908127208, 0.9151943462897526, 0.8621908127208481, 0.8445229681978799, 0.8162544169611308, 0.7491166077738516, 0.7420494699646644, 0.04240282685512368, 0.0353356890459364, 0.9328621908127208, 0.901060070671378, 0.014134275618374558, 0.0035335689045936395, 0.0035335689045936395, 0.0035335689045936395, 0.0035335689045936395, 0.0035335689045936395, 0.0035335689045936395, 0.0035335689045936395, 0.0035335689045936395, 0.0035335689045936395, 0.0035335689045936395, 0.0035335689045936395, 0.0035335689045936395, 0.0035335689045936395, 0.007067137809187279, 0.01060070671378092, 0.01060070671378092, 0.014134275618374558, 0.0989399293286219, 0.9363957597173145, 0.053003533568904596, 0.04240282685512368, 0.024734982332155476, 0.028268551236749116, 0.02120141342756184, 0.024734982332155476, 0.024734982332155476, 0.02120141342756184, 0.02120141342756184, 0.024734982332155476, 0.024734982332155476, 0.024734982332155476, 0.024734982332155476, 0.024734982332155476, 0.024734982332155476, 0.03180212014134275, 0.7915194346289752, 0.03180212014134275, 0.03180212014134275, 0.03180212014134275, 0.04240282685512368, 0.045936395759717315, 0.05653710247349823, 0.05653710247349823, 0.1519434628975265, 0.3392226148409894, 0.6819787985865724], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/CEBP_ZZ.gap.json b/pfam_gap_rates/CEBP_ZZ.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c57503e7e3cda787a8834aec2dea8d132440e185
--- /dev/null
+++ b/pfam_gap_rates/CEBP_ZZ.gap.json
@@ -0,0 +1 @@
+{"family": "CEBP_ZZ", "n_seqs": 241, "length": 68, "gap_rates": [0.06639004149377593, 0.03734439834024896, 0.016597510373443983, 0.012448132780082987, 0.008298755186721992, 0.008298755186721992, 0.008298755186721992, 0.008298755186721992, 0.008298755186721992, 0.008298755186721992, 0.004149377593360996, 0.004149377593360996, 0.34439834024896265, 0.004149377593360996, 0.004149377593360996, 0.004149377593360996, 0.004149377593360996, 0.004149377593360996, 0.004149377593360996, 0.004149377593360996, 0.004149377593360996, 0.004149377593360996, 0.4024896265560166, 0.3983402489626556, 0.4066390041493776, 0.4190871369294606, 0.4024896265560166, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.004149377593360996, 0.004149377593360996, 0.02074688796680498, 0.02074688796680498, 0.02074688796680498, 0.02074688796680498, 0.03319502074688797, 0.03319502074688797, 0.03319502074688797, 0.03319502074688797, 0.03734439834024896, 0.03734439834024896, 0.03734439834024896, 0.03734439834024896, 0.03734439834024896, 0.04149377593360996, 0.04564315352697095, 0.9377593360995851, 0.941908713692946, 0.9128630705394191, 0.05394190871369295, 0.05394190871369295, 0.058091286307053944, 0.2033195020746888, 0.12448132780082988, 0.07883817427385892, 0.15767634854771784, 0.5477178423236515, 0.07468879668049792, 0.07468879668049792, 0.07468879668049792, 0.07883817427385892, 0.1037344398340249, 0.12448132780082988, 0.8049792531120332], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/CENP-S.gap.json b/pfam_gap_rates/CENP-S.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..76604365a3b3ece3614ca5e0772b4b3fd414f03b
--- /dev/null
+++ b/pfam_gap_rates/CENP-S.gap.json
@@ -0,0 +1 @@
+{"family": "CENP-S", "n_seqs": 198, "length": 84, "gap_rates": [0.5707070707070707, 0.3787878787878788, 0.2676767676767677, 0.23232323232323232, 0.1919191919191919, 0.15656565656565657, 0.1414141414141414, 0.1414141414141414, 0.13636363636363635, 0.12626262626262627, 0.12121212121212122, 0.12121212121212122, 0.10606060606060606, 0.10101010101010101, 0.09595959595959595, 0.09090909090909091, 0.08585858585858586, 0.08585858585858586, 0.09595959595959595, 0.08080808080808081, 0.9090909090909091, 0.9242424242424242, 0.9444444444444444, 0.9393939393939394, 0.9242424242424242, 0.898989898989899, 0.06565656565656566, 0.0707070707070707, 0.07575757575757576, 0.0707070707070707, 0.05555555555555555, 0.050505050505050504, 0.050505050505050504, 0.050505050505050504, 0.050505050505050504, 0.050505050505050504, 0.050505050505050504, 0.050505050505050504, 0.050505050505050504, 0.04040404040404041, 0.04040404040404041, 0.04040404040404041, 0.045454545454545456, 0.03535353535353535, 0.030303030303030304, 0.030303030303030304, 0.030303030303030304, 0.9494949494949495, 0.015151515151515152, 0.010101010101010102, 0.9191919191919192, 0.020202020202020204, 0.03535353535353535, 0.045454545454545456, 0.04040404040404041, 0.04040404040404041, 0.04040404040404041, 0.04040404040404041, 0.030303030303030304, 0.030303030303030304, 0.03535353535353535, 0.025252525252525252, 0.025252525252525252, 0.025252525252525252, 0.025252525252525252, 0.025252525252525252, 0.025252525252525252, 0.025252525252525252, 0.025252525252525252, 0.025252525252525252, 0.025252525252525252, 0.025252525252525252, 0.025252525252525252, 0.030303030303030304, 0.030303030303030304, 0.03535353535353535, 0.03535353535353535, 0.050505050505050504, 0.050505050505050504, 0.050505050505050504, 0.050505050505050504, 0.050505050505050504, 0.09090909090909091, 0.19696969696969696], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/CFEM.gap.json b/pfam_gap_rates/CFEM.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..8d690f42fb81133596b6e703bf3b80ed7510e140
--- /dev/null
+++ b/pfam_gap_rates/CFEM.gap.json
@@ -0,0 +1 @@
+{"family": "CFEM", "n_seqs": 1039, "length": 74, "gap_rates": [0.6179018286814244, 0.3176130895091434, 0.1973051010587103, 0.11934552454282965, 0.0846968238691049, 0.059672762271414825, 0.04908565928777671, 0.04331087584215592, 0.03849855630413859, 0.028873917228103944, 0.023099133782483156, 0.02213666987487969, 0.021174205967276226, 0.019249278152069296, 0.025024061597690085, 0.02213666987487969, 0.17709335899903753, 0.24735322425409048, 0.8748796920115496, 0.04812319538017324, 0.1068334937439846, 0.670837343599615, 0.3869104908565929, 0.0019249278152069298, 0.03753609239653513, 0.7208854667949952, 0.009624639076034648, 0.0, 0.0019249278152069298, 0.0019249278152069298, 0.0, 0.0, 0.0009624639076034649, 0.0, 0.8710298363811357, 0.9076034648700674, 0.7449470644850819, 0.03657362848893166, 0.021174205967276226, 0.0, 0.0, 0.0009624639076034649, 0.0028873917228103944, 0.0038498556304138597, 0.004812319538017324, 0.0038498556304138597, 0.004812319538017324, 0.004812319538017324, 0.004812319538017324, 0.004812319538017324, 0.016361886429258902, 0.9480269489894129, 0.011549566891241578, 0.007699711260827719, 0.008662175168431183, 0.017324350336862367, 0.8960538979788258, 0.02406159769008662, 0.016361886429258902, 0.03176130895091434, 0.02406159769008662, 0.03464870067372473, 0.9374398460057748, 0.029836381135707413, 0.03176130895091434, 0.0356111645813282, 0.04042348411934552, 0.04331087584215592, 0.04812319538017324, 0.0519730510105871, 0.05582290664100096, 0.06448508180943215, 0.06737247353224254, 0.28873917228103946], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/CHORD.gap.json b/pfam_gap_rates/CHORD.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b11d24eb9650695bd6b018fd7cffd9f6d4ed0094
--- /dev/null
+++ b/pfam_gap_rates/CHORD.gap.json
@@ -0,0 +1 @@
+{"family": "CHORD", "n_seqs": 567, "length": 69, "gap_rates": [0.8853615520282186, 0.10934744268077601, 0.07231040564373897, 0.07231040564373897, 0.07054673721340388, 0.07054673721340388, 0.07054673721340388, 0.06525573192239859, 0.06525573192239859, 0.06172839506172839, 0.059964726631393295, 0.0564373897707231, 0.0564373897707231, 0.0564373897707231, 0.0564373897707231, 0.0564373897707231, 0.0564373897707231, 0.18342151675485008, 0.9400352733686067, 0.9488536155202821, 0.9241622574955908, 0.19047619047619047, 0.1657848324514991, 0.2239858906525573, 0.6349206349206349, 0.03350970017636684, 0.03350970017636684, 0.03350970017636684, 0.029982363315696647, 0.029982363315696647, 0.026455026455026454, 0.04585537918871252, 0.026455026455026454, 0.021164021164021163, 0.02292768959435626, 0.024691358024691357, 0.024691358024691357, 0.01763668430335097, 0.012345679012345678, 0.010582010582010581, 0.010582010582010581, 0.014109347442680775, 0.014109347442680775, 0.014109347442680775, 0.014109347442680775, 0.9453262786596119, 0.9453262786596119, 0.8606701940035273, 0.014109347442680775, 0.014109347442680775, 0.015873015873015872, 0.019400352733686066, 0.019400352733686066, 0.019400352733686066, 0.019400352733686066, 0.019400352733686066, 0.019400352733686066, 0.019400352733686066, 0.019400352733686066, 0.019400352733686066, 0.019400352733686066, 0.019400352733686066, 0.024691358024691357, 0.029982363315696647, 0.029982363315696647, 0.03350970017636684, 0.04409171075837742, 0.12874779541446207, 0.1746031746031746], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/CMAS.gap.json b/pfam_gap_rates/CMAS.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..2b6dc7e18e48c390e4d1827cd86d47e8ab201cdc
--- /dev/null
+++ b/pfam_gap_rates/CMAS.gap.json
@@ -0,0 +1 @@
+{"family": "CMAS", "n_seqs": 2072, "length": 292, "gap_rates": [0.9194015444015444, 0.7673745173745173, 0.6303088803088803, 0.4971042471042471, 0.40878378378378377, 0.28716216216216217, 0.2273166023166023, 0.17857142857142858, 0.152992277992278, 0.13947876447876448, 0.12934362934362933, 0.12644787644787644, 0.12451737451737452, 0.12113899613899613, 0.12113899613899613, 0.1192084942084942, 0.1167953667953668, 0.11534749034749035, 0.1138996138996139, 0.11245173745173745, 0.11245173745173745, 0.11245173745173745, 0.11052123552123552, 0.1085907335907336, 0.1085907335907336, 0.1085907335907336, 0.10907335907335908, 0.1085907335907336, 0.10714285714285714, 0.10714285714285714, 0.10714285714285714, 0.11245173745173745, 0.11631274131274132, 0.11196911196911197, 0.10617760617760617, 0.10521235521235521, 0.10328185328185328, 0.10231660231660232, 0.8137065637065637, 0.9054054054054054, 0.9247104247104247, 0.946911196911197, 0.9391891891891891, 0.9174710424710425, 0.890926640926641, 0.7953667953667953, 0.10231660231660232, 0.10183397683397684, 0.10038610038610038, 0.14575289575289574, 0.07866795366795366, 0.0777027027027027, 0.07722007722007722, 0.07722007722007722, 0.07673745173745174, 0.07673745173745174, 0.07335907335907337, 0.07046332046332046, 0.06467181467181467, 0.061293436293436296, 0.05936293436293436, 0.05791505791505792, 0.057432432432432436, 0.057432432432432436, 0.057432432432432436, 0.061293436293436296, 0.06225868725868726, 0.0583976833976834, 0.05791505791505792, 0.055984555984555984, 0.05694980694980695, 0.05791505791505792, 0.05501930501930502, 0.05405405405405406, 0.05405405405405406, 0.05357142857142857, 0.05357142857142857, 0.05357142857142857, 0.05405405405405406, 0.05357142857142857, 0.0555019305019305, 0.05405405405405406, 0.05501930501930502, 0.0555019305019305, 0.055984555984555984, 0.0583976833976834, 0.05936293436293436, 0.060328185328185326, 0.05888030888030888, 0.05888030888030888, 0.0583976833976834, 0.1694015444015444, 0.8991312741312741, 0.05888030888030888, 0.059845559845559844, 0.060328185328185326, 0.05936293436293436, 0.05936293436293436, 0.060328185328185326, 0.060328185328185326, 0.061293436293436296, 0.06225868725868726, 0.06225868725868726, 0.06322393822393822, 0.06274131274131274, 0.06322393822393822, 0.06322393822393822, 0.06418918918918919, 0.06563706563706563, 0.06611969111969113, 0.06805019305019305, 0.07142857142857142, 0.07432432432432433, 0.07528957528957529, 0.07722007722007722, 0.0805984555984556, 0.08687258687258688, 0.08783783783783784, 0.17326254826254825, 0.17857142857142858, 0.18436293436293436, 0.16505791505791506, 0.0859073359073359, 0.0834942084942085, 0.08011583011583012, 0.08108108108108109, 0.08108108108108109, 0.08108108108108109, 0.08204633204633205, 0.0834942084942085, 0.08832046332046332, 0.08976833976833977, 0.09218146718146718, 0.08783783783783784, 0.08638996138996138, 0.6665057915057915, 0.8981660231660231, 0.7934362934362934, 0.5217181467181468, 0.08735521235521236, 0.08783783783783784, 0.08832046332046332, 0.08832046332046332, 0.08928571428571429, 0.08928571428571429, 0.08976833976833977, 0.09073359073359073, 0.09121621621621621, 0.08976833976833977, 0.08928571428571429, 0.08976833976833977, 0.08976833976833977, 0.09314671814671814, 0.19015444015444016, 0.1998069498069498, 0.10328185328185328, 0.09797297297297297, 0.09893822393822393, 0.09652509652509653, 0.09266409266409266, 0.09218146718146718, 0.09121621621621621, 0.09218146718146718, 0.09314671814671814, 0.09362934362934362, 0.09362934362934362, 0.09314671814671814, 0.09362934362934362, 0.09314671814671814, 0.09266409266409266, 0.09266409266409266, 0.09314671814671814, 0.09314671814671814, 0.09314671814671814, 0.09314671814671814, 0.09218146718146718, 0.09218146718146718, 0.09362934362934362, 0.10907335907335908, 0.09652509652509653, 0.09749034749034749, 0.10231660231660232, 0.10376447876447877, 0.1085907335907336, 0.1138996138996139, 0.12162162162162163, 0.11631274131274132, 0.11824324324324324, 0.11631274131274132, 0.42857142857142855, 0.38658301158301156, 0.38465250965250963, 0.5048262548262549, 0.3556949806949807, 0.4734555984555985, 0.9387065637065637, 0.9498069498069498, 0.9411196911196911, 0.9353281853281853, 0.10955598455598456, 0.10907335907335908, 0.10569498069498069, 0.10376447876447877, 0.1027992277992278, 0.10231660231660232, 0.1027992277992278, 0.10231660231660232, 0.10183397683397684, 0.1027992277992278, 0.10666023166023166, 0.10569498069498069, 0.10569498069498069, 0.10569498069498069, 0.10714285714285714, 0.10714285714285714, 0.10714285714285714, 0.10762548262548262, 0.10617760617760617, 0.10666023166023166, 0.10762548262548262, 0.861969111969112, 0.22104247104247104, 0.1361003861003861, 0.12596525096525096, 0.11583011583011583, 0.12017374517374517, 0.11245173745173745, 0.111003861003861, 0.10569498069498069, 0.11196911196911197, 0.10666023166023166, 0.10424710424710425, 0.1027992277992278, 0.10376447876447877, 0.10376447876447877, 0.1027992277992278, 0.10376447876447877, 0.10376447876447877, 0.10424710424710425, 0.10569498069498069, 0.10569498069498069, 0.10569498069498069, 0.10617760617760617, 0.10714285714285714, 0.10955598455598456, 0.11003861003861004, 0.11003861003861004, 0.11052123552123552, 0.11148648648648649, 0.11293436293436293, 0.11293436293436293, 0.11534749034749035, 0.11486486486486487, 0.11824324324324324, 0.1192084942084942, 0.12017374517374517, 0.12693050193050193, 0.13079150579150578, 0.13320463320463322, 0.13996138996138996, 0.1443050193050193, 0.7133204633204633, 0.14961389961389962, 0.152992277992278, 0.15878378378378377, 0.166988416988417, 0.1751930501930502, 0.1780888030888031, 0.17857142857142858, 0.18001930501930502, 0.1805019305019305, 0.1805019305019305, 0.1805019305019305, 0.18098455598455598, 0.18484555984555984, 0.1891891891891892, 0.19111969111969113, 0.19256756756756757, 0.19401544401544402, 0.19401544401544402, 0.19546332046332046, 0.1998069498069498, 0.20945945945945946, 0.22393822393822393, 0.23938223938223938, 0.25386100386100385, 0.28523166023166024, 0.3161196911196911, 0.33542471042471045, 0.35376447876447875, 0.38658301158301156, 0.5255791505791506], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/CNH.gap.json b/pfam_gap_rates/CNH.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..01c4fc120d501a6c5f3e3d1c3cac675fe9d71abe
--- /dev/null
+++ b/pfam_gap_rates/CNH.gap.json
@@ -0,0 +1 @@
+{"family": "CNH", "n_seqs": 1340, "length": 384, "gap_rates": [0.9, 0.6544776119402985, 0.6149253731343284, 0.5485074626865671, 0.48582089552238805, 0.3835820895522388, 0.3276119402985075, 0.30970149253731344, 0.29328358208955224, 0.28582089552238804, 0.2835820895522388, 0.2828358208955224, 0.2828358208955224, 0.282089552238806, 0.28134328358208954, 0.28134328358208954, 0.28432835820895525, 0.9313432835820895, 0.2835820895522388, 0.28059701492537314, 0.28059701492537314, 0.28059701492537314, 0.28059701492537314, 0.28059701492537314, 0.8298507462686567, 0.8902985074626866, 0.9186567164179105, 0.9470149253731344, 0.9283582089552239, 0.9067164179104478, 0.8507462686567164, 0.7216417910447761, 0.5574626865671641, 0.41194029850746267, 0.3895522388059702, 0.2873134328358209, 0.28059701492537314, 0.27611940298507465, 0.27313432835820894, 0.2656716417910448, 0.25149253731343285, 0.24104477611940298, 0.23059701492537313, 0.22164179104477613, 0.2902985074626866, 0.23656716417910448, 0.6380597014925373, 0.923134328358209, 0.9462686567164179, 0.9298507462686567, 0.7507462686567165, 0.6186567164179104, 0.1746268656716418, 0.17238805970149254, 0.17164179104477612, 0.16940298507462687, 0.16865671641791044, 0.16865671641791044, 0.16791044776119404, 0.16791044776119404, 0.28059701492537314, 0.27313432835820894, 0.16716417910447762, 0.1664179104477612, 0.16492537313432837, 0.16417910447761194, 0.16343283582089552, 0.16343283582089552, 0.16343283582089552, 0.1626865671641791, 0.6440298507462686, 0.9365671641791045, 0.6343283582089553, 0.16940298507462687, 0.16417910447761194, 0.16791044776119404, 0.16791044776119404, 0.16716417910447762, 0.16716417910447762, 0.1664179104477612, 0.16865671641791044, 0.16865671641791044, 0.1664179104477612, 0.16567164179104477, 0.16716417910447762, 0.16567164179104477, 0.16716417910447762, 0.16791044776119404, 0.373134328358209, 0.3880597014925373, 0.4059701492537313, 0.8917910447761194, 0.4582089552238806, 0.5261194029850746, 0.491044776119403, 0.47686567164179106, 0.4582089552238806, 0.4544776119402985, 0.4835820895522388, 0.6611940298507463, 0.5597014925373134, 0.8238805970149253, 0.8485074626865672, 0.8649253731343284, 0.8768656716417911, 0.9, 0.9208955223880597, 0.9432835820895522, 0.9402985074626866, 0.9134328358208955, 0.8992537313432836, 0.8664179104477612, 0.8522388059701492, 0.8402985074626865, 0.817910447761194, 0.517910447761194, 0.48134328358208955, 0.43955223880597016, 0.1761194029850746, 0.16492537313432837, 0.19029850746268656, 0.18134328358208956, 0.15895522388059702, 0.16119402985074627, 0.15298507462686567, 0.14776119402985075, 0.14701492537313432, 0.14776119402985075, 0.14776119402985075, 0.1455223880597015, 0.8298507462686567, 0.8791044776119403, 0.9238805970149254, 0.8977611940298508, 0.8567164179104477, 0.6626865671641791, 0.5798507462686567, 0.417910447761194, 0.18059701492537314, 0.14776119402985075, 0.14402985074626865, 0.13880597014925372, 0.13955223880597015, 0.1335820895522388, 0.1291044776119403, 0.1253731343283582, 0.12388059701492538, 0.1208955223880597, 0.1208955223880597, 0.11940298507462686, 0.11791044776119403, 0.11865671641791045, 0.11716417910447761, 0.7194029850746269, 0.7402985074626866, 0.7708955223880597, 0.7283582089552239, 0.7022388059701492, 0.11567164179104478, 0.11791044776119403, 0.11791044776119403, 0.11716417910447761, 0.11716417910447761, 0.11940298507462686, 0.11865671641791045, 0.11791044776119403, 0.11791044776119403, 0.891044776119403, 0.25223880597014925, 0.3082089552238806, 0.19029850746268656, 0.17164179104477612, 0.18582089552238806, 0.5291044776119403, 0.6014925373134329, 0.65, 0.7044776119402985, 0.7179104477611941, 0.7305970149253731, 0.7395522388059701, 0.7701492537313432, 0.8014925373134328, 0.8977611940298508, 0.9365671641791045, 0.95, 0.9283582089552239, 0.8753731343283582, 0.7791044776119403, 0.746268656716418, 0.7343283582089553, 0.7238805970149254, 0.7134328358208956, 0.6604477611940298, 0.6395522388059701, 0.5925373134328358, 0.13805970149253732, 0.1253731343283582, 0.11567164179104478, 0.10820895522388059, 0.10746268656716418, 0.10522388059701493, 0.1044776119402985, 0.10671641791044777, 0.10373134328358209, 0.8805970149253731, 0.9097014925373135, 0.8992537313432836, 0.8723880597014926, 0.10373134328358209, 0.10522388059701493, 0.10597014925373134, 0.10597014925373134, 0.10671641791044777, 0.10671641791044777, 0.10522388059701493, 0.1044776119402985, 0.10149253731343283, 0.7380597014925373, 0.8455223880597015, 0.935820895522388, 0.7477611940298508, 0.6395522388059701, 0.09701492537313433, 0.09925373134328358, 0.09925373134328358, 0.1, 0.10074626865671642, 0.09925373134328358, 0.1, 0.15746268656716417, 0.8865671641791045, 0.8925373134328358, 0.8947761194029851, 0.9425373134328359, 0.9134328358208955, 0.8947761194029851, 0.8902985074626866, 0.8582089552238806, 0.10074626865671642, 0.10298507462686567, 0.10223880597014925, 0.10298507462686567, 0.10223880597014925, 0.1044776119402985, 0.10149253731343283, 0.10149253731343283, 0.10149253731343283, 0.10149253731343283, 0.8970149253731343, 0.20223880597014926, 0.11791044776119403, 0.11791044776119403, 0.11194029850746269, 0.11567164179104478, 0.12238805970149254, 0.11791044776119403, 0.1537313432835821, 0.1791044776119403, 0.15298507462686567, 0.15, 0.15895522388059702, 0.17686567164179104, 0.1962686567164179, 0.8022388059701493, 0.8522388059701492, 0.8880597014925373, 0.9194029850746268, 0.9313432835820895, 0.9447761194029851, 0.95, 0.9373134328358209, 0.926865671641791, 0.8985074626865671, 0.8701492537313433, 0.8291044776119403, 0.7164179104477612, 0.41194029850746267, 0.48955223880597015, 0.4701492537313433, 0.5694029850746268, 0.46119402985074626, 0.44776119402985076, 0.4246268656716418, 0.3238805970149254, 0.25223880597014925, 0.19701492537313434, 0.1701492537313433, 0.16044776119402984, 0.15074626865671642, 0.16343283582089552, 0.11940298507462686, 0.12611940298507462, 0.12835820895522387, 0.11641791044776119, 0.1126865671641791, 0.2462686567164179, 0.11343283582089553, 0.8276119402985075, 0.8365671641791045, 0.8044776119402985, 0.10895522388059702, 0.10820895522388059, 0.10895522388059702, 0.10820895522388059, 0.10820895522388059, 0.10671641791044777, 0.10373134328358209, 0.10223880597014925, 0.10074626865671642, 0.10149253731343283, 0.10298507462686567, 0.10597014925373134, 0.10820895522388059, 0.10820895522388059, 0.10970149253731343, 0.10970149253731343, 0.10895522388059702, 0.12761194029850748, 0.9201492537313433, 0.8865671641791045, 0.11119402985074626, 0.17164179104477612, 0.1126865671641791, 0.8880597014925373, 0.9223880597014925, 0.6828358208955224, 0.17164179104477612, 0.10895522388059702, 0.10820895522388059, 0.10820895522388059, 0.10895522388059702, 0.10895522388059702, 0.10970149253731343, 0.10820895522388059, 0.10820895522388059, 0.10820895522388059, 0.10820895522388059, 0.10820895522388059, 0.10746268656716418, 0.1208955223880597, 0.11791044776119403, 0.8888059701492538, 0.12014925373134329, 0.12313432835820895, 0.12164179104477611, 0.12313432835820895, 0.12313432835820895, 0.12388059701492538, 0.12985074626865672, 0.1328358208955224, 0.13880597014925372, 0.141044776119403, 0.9455223880597015, 0.14328358208955225, 0.14477611940298507, 0.1455223880597015, 0.14626865671641792, 0.14626865671641792, 0.14776119402985075, 0.15223880597014924, 0.15522388059701492, 0.16044776119402984, 0.17238805970149254, 0.19402985074626866, 0.19925373134328359, 0.22686567164179106, 0.891044776119403, 0.8925373134328358, 0.891044776119403, 0.20970149253731343, 0.21119402985074626, 0.2126865671641791, 0.21492537313432836, 0.22462686567164178, 0.2417910447761194, 0.26343283582089555, 0.2947761194029851, 0.3156716417910448, 0.3276119402985075, 0.34626865671641793, 0.36716417910447763, 0.4343283582089552, 0.5791044776119403, 0.6738805970149254], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/CNOT1_TTP_bind.gap.json b/pfam_gap_rates/CNOT1_TTP_bind.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..8e49fa028cd85603d686d16e40add4857eb95aa9
--- /dev/null
+++ b/pfam_gap_rates/CNOT1_TTP_bind.gap.json
@@ -0,0 +1 @@
+{"family": "CNOT1_TTP_bind", "n_seqs": 352, "length": 194, "gap_rates": [0.9375, 0.8948863636363636, 0.875, 0.8721590909090909, 0.8579545454545454, 0.8494318181818182, 0.8238636363636364, 0.8039772727272727, 0.78125, 0.7556818181818182, 0.7386363636363636, 0.7272727272727273, 0.7272727272727273, 0.7159090909090909, 0.7045454545454546, 0.6789772727272727, 0.6363636363636364, 0.59375, 0.5482954545454546, 0.5028409090909091, 0.4289772727272727, 0.3977272727272727, 0.36079545454545453, 0.3352272727272727, 0.2784090909090909, 0.1846590909090909, 0.15056818181818182, 0.14204545454545456, 0.10511363636363637, 0.09659090909090909, 0.08522727272727272, 0.07102272727272728, 0.05965909090909091, 0.05965909090909091, 0.056818181818181816, 0.05397727272727273, 0.05113636363636364, 0.05113636363636364, 0.05113636363636364, 0.05113636363636364, 0.048295454545454544, 0.048295454545454544, 0.05113636363636364, 0.05113636363636364, 0.7784090909090909, 0.8181818181818182, 0.8181818181818182, 0.7727272727272727, 0.05965909090909091, 0.048295454545454544, 0.03977272727272727, 0.04261363636363636, 0.04261363636363636, 0.03977272727272727, 0.03977272727272727, 0.036931818181818184, 0.036931818181818184, 0.036931818181818184, 0.036931818181818184, 0.036931818181818184, 0.036931818181818184, 0.036931818181818184, 0.036931818181818184, 0.03977272727272727, 0.04261363636363636, 0.048295454545454544, 0.04261363636363636, 0.05113636363636364, 0.045454545454545456, 0.045454545454545456, 0.048295454545454544, 0.03977272727272727, 0.04261363636363636, 0.04261363636363636, 0.04261363636363636, 0.04261363636363636, 0.04261363636363636, 0.036931818181818184, 0.036931818181818184, 0.036931818181818184, 0.03409090909090909, 0.03409090909090909, 0.03409090909090909, 0.03409090909090909, 0.03409090909090909, 0.03409090909090909, 0.03409090909090909, 0.03409090909090909, 0.03409090909090909, 0.03409090909090909, 0.03409090909090909, 0.9460227272727273, 0.03409090909090909, 0.03409090909090909, 0.03409090909090909, 0.03409090909090909, 0.036931818181818184, 0.03977272727272727, 0.03977272727272727, 0.03409090909090909, 0.028409090909090908, 0.028409090909090908, 0.028409090909090908, 0.03125, 0.03125, 0.03409090909090909, 0.03409090909090909, 0.03409090909090909, 0.03409090909090909, 0.03409090909090909, 0.036931818181818184, 0.03977272727272727, 0.03977272727272727, 0.036931818181818184, 0.036931818181818184, 0.8835227272727273, 0.03409090909090909, 0.03409090909090909, 0.03409090909090909, 0.03409090909090909, 0.03409090909090909, 0.03409090909090909, 0.036931818181818184, 0.03409090909090909, 0.03409090909090909, 0.03409090909090909, 0.03409090909090909, 0.03409090909090909, 0.03409090909090909, 0.03409090909090909, 0.036931818181818184, 0.036931818181818184, 0.036931818181818184, 0.8068181818181818, 0.04261363636363636, 0.09090909090909091, 0.07954545454545454, 0.036931818181818184, 0.03125, 0.028409090909090908, 0.028409090909090908, 0.028409090909090908, 0.028409090909090908, 0.028409090909090908, 0.028409090909090908, 0.028409090909090908, 0.028409090909090908, 0.028409090909090908, 0.028409090909090908, 0.028409090909090908, 0.03125, 0.036931818181818184, 0.036931818181818184, 0.036931818181818184, 0.03409090909090909, 0.036931818181818184, 0.03977272727272727, 0.03977272727272727, 0.03977272727272727, 0.03977272727272727, 0.056818181818181816, 0.056818181818181816, 0.056818181818181816, 0.056818181818181816, 0.056818181818181816, 0.9460227272727273, 0.056818181818181816, 0.056818181818181816, 0.056818181818181816, 0.05965909090909091, 0.0625, 0.06534090909090909, 0.06818181818181818, 0.13636363636363635, 0.1534090909090909, 0.19318181818181818, 0.22443181818181818, 0.23295454545454544, 0.23295454545454544, 0.24147727272727273, 0.2556818181818182, 0.2556818181818182, 0.26704545454545453, 0.2755681818181818, 0.28125, 0.30113636363636365, 0.3409090909090909, 0.39488636363636365, 0.41761363636363635, 0.5, 0.5738636363636364, 0.6477272727272727, 0.78125, 0.8721590909090909], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/COE1_HLH.gap.json b/pfam_gap_rates/COE1_HLH.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..fbb3f030c395e6e73521f6562b3254a5362c062c
--- /dev/null
+++ b/pfam_gap_rates/COE1_HLH.gap.json
@@ -0,0 +1 @@
+{"family": "COE1_HLH", "n_seqs": 124, "length": 44, "gap_rates": [0.04838709677419355, 0.016129032258064516, 0.016129032258064516, 0.016129032258064516, 0.016129032258064516, 0.008064516129032258, 0.008064516129032258, 0.008064516129032258, 0.008064516129032258, 0.008064516129032258, 0.008064516129032258, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.024193548387096774, 0.024193548387096774, 0.024193548387096774, 0.024193548387096774, 0.03225806451612903, 0.03225806451612903, 0.03225806451612903, 0.03225806451612903, 0.03225806451612903, 0.03225806451612903, 0.03225806451612903, 0.03225806451612903, 0.03225806451612903, 0.04032258064516129, 0.04032258064516129], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/COX4_pro.gap.json b/pfam_gap_rates/COX4_pro.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b9130a7e13f0ce75dc93dccd7498bf07026d524a
--- /dev/null
+++ b/pfam_gap_rates/COX4_pro.gap.json
@@ -0,0 +1 @@
+{"family": "COX4_pro", "n_seqs": 758, "length": 81, "gap_rates": [0.521108179419525, 0.13060686015831136, 0.04353562005277045, 0.0158311345646438, 0.009234828496042216, 0.006596306068601583, 0.005277044854881266, 0.005277044854881266, 0.005277044854881266, 0.005277044854881266, 0.005277044854881266, 0.005277044854881266, 0.005277044854881266, 0.00395778364116095, 0.00395778364116095, 0.00395778364116095, 0.00395778364116095, 0.00395778364116095, 0.03430079155672823, 0.05013192612137203, 0.05013192612137203, 0.09366754617414248, 0.03562005277044855, 0.6781002638522428, 0.8746701846965699, 0.9116094986807388, 0.945910290237467, 0.9393139841688655, 0.8878627968337731, 0.8337730870712401, 0.36807387862796836, 0.00395778364116095, 0.0079155672823219, 0.002638522427440633, 0.00395778364116095, 0.0079155672823219, 0.00395778364116095, 0.005277044854881266, 0.005277044854881266, 0.006596306068601583, 0.18469656992084432, 0.0013192612137203166, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0013192612137203166, 0.00395778364116095, 0.006596306068601583, 0.032981530343007916, 0.0079155672823219, 0.5844327176781002, 0.010554089709762533, 0.009234828496042216, 0.009234828496042216, 0.009234828496042216, 0.009234828496042216, 0.010554089709762533, 0.010554089709762533, 0.011873350923482849, 0.010554089709762533, 0.011873350923482849, 0.013192612137203167, 0.0158311345646438, 0.018469656992084433, 0.027704485488126648, 0.04353562005277045, 0.07651715039577836, 0.1424802110817942, 0.5646437994722955], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/COX5A.gap.json b/pfam_gap_rates/COX5A.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c2b3434db5f06cf0c5ac796d7621f94c1355e183
--- /dev/null
+++ b/pfam_gap_rates/COX5A.gap.json
@@ -0,0 +1 @@
+{"family": "COX5A", "n_seqs": 231, "length": 106, "gap_rates": [0.8658008658008658, 0.24675324675324675, 0.18181818181818182, 0.12554112554112554, 0.09523809523809523, 0.08658008658008658, 0.08225108225108226, 0.0735930735930736, 0.06926406926406926, 0.06926406926406926, 0.06060606060606061, 0.05627705627705628, 0.05627705627705628, 0.05627705627705628, 0.05627705627705628, 0.05627705627705628, 0.05627705627705628, 0.05627705627705628, 0.047619047619047616, 0.047619047619047616, 0.6017316017316018, 0.047619047619047616, 0.047619047619047616, 0.047619047619047616, 0.04329004329004329, 0.04329004329004329, 0.03896103896103896, 0.03896103896103896, 0.03896103896103896, 0.025974025974025976, 0.025974025974025976, 0.021645021645021644, 0.021645021645021644, 0.021645021645021644, 0.021645021645021644, 0.021645021645021644, 0.021645021645021644, 0.021645021645021644, 0.021645021645021644, 0.021645021645021644, 0.021645021645021644, 0.021645021645021644, 0.021645021645021644, 0.021645021645021644, 0.021645021645021644, 0.021645021645021644, 0.021645021645021644, 0.021645021645021644, 0.021645021645021644, 0.017316017316017316, 0.012987012987012988, 0.012987012987012988, 0.012987012987012988, 0.012987012987012988, 0.008658008658008658, 0.008658008658008658, 0.008658008658008658, 0.008658008658008658, 0.008658008658008658, 0.012987012987012988, 0.012987012987012988, 0.012987012987012988, 0.012987012987012988, 0.012987012987012988, 0.012987012987012988, 0.012987012987012988, 0.017316017316017316, 0.017316017316017316, 0.017316017316017316, 0.012987012987012988, 0.012987012987012988, 0.008658008658008658, 0.008658008658008658, 0.008658008658008658, 0.008658008658008658, 0.008658008658008658, 0.008658008658008658, 0.935064935064935, 0.935064935064935, 0.7922077922077922, 0.5887445887445888, 0.012987012987012988, 0.012987012987012988, 0.008658008658008658, 0.008658008658008658, 0.008658008658008658, 0.008658008658008658, 0.012987012987012988, 0.017316017316017316, 0.021645021645021644, 0.017316017316017316, 0.017316017316017316, 0.021645021645021644, 0.021645021645021644, 0.021645021645021644, 0.021645021645021644, 0.021645021645021644, 0.04329004329004329, 0.047619047619047616, 0.047619047619047616, 0.05194805194805195, 0.05194805194805195, 0.05194805194805195, 0.05194805194805195, 0.06060606060606061, 0.7792207792207793], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/CPW_WPC.gap.json b/pfam_gap_rates/CPW_WPC.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f9fe1b2bcea89af9d1b5ef09ef4d9b193f93e8ec
--- /dev/null
+++ b/pfam_gap_rates/CPW_WPC.gap.json
@@ -0,0 +1 @@
+{"family": "CPW_WPC", "n_seqs": 323, "length": 73, "gap_rates": [0.42105263157894735, 0.2786377708978328, 0.1826625386996904, 0.14241486068111456, 0.1238390092879257, 0.11455108359133127, 0.07739938080495357, 0.09597523219814241, 0.9226006191950464, 0.043343653250773995, 0.043343653250773995, 0.03715170278637771, 0.02786377708978328, 0.02786377708978328, 0.7585139318885449, 0.8575851393188855, 0.9256965944272446, 0.9442724458204335, 0.9040247678018576, 0.8359133126934984, 0.5851393188854489, 0.19814241486068113, 0.07430340557275542, 0.034055727554179564, 0.02786377708978328, 0.030959752321981424, 0.030959752321981424, 0.01238390092879257, 0.9473684210526315, 0.009287925696594427, 0.04643962848297214, 0.02476780185758514, 0.01238390092879257, 0.9380804953560371, 0.006191950464396285, 0.009287925696594427, 0.018575851393188854, 0.043343653250773995, 0.891640866873065, 0.848297213622291, 0.018575851393188854, 0.018575851393188854, 0.018575851393188854, 0.07430340557275542, 0.8637770897832817, 0.021671826625386997, 0.015479876160990712, 0.018575851393188854, 0.018575851393188854, 0.030959752321981424, 0.021671826625386997, 0.02476780185758514, 0.10835913312693499, 0.04953560371517028, 0.02476780185758514, 0.9411764705882353, 0.02786377708978328, 0.02786377708978328, 0.02786377708978328, 0.030959752321981424, 0.030959752321981424, 0.034055727554179564, 0.03715170278637771, 0.043343653250773995, 0.05263157894736842, 0.05572755417956656, 0.05572755417956656, 0.07120743034055728, 0.07120743034055728, 0.07739938080495357, 0.11145510835913312, 0.28173374613003094, 0.7275541795665634], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/CRAL_TRIO.gap.json b/pfam_gap_rates/CRAL_TRIO.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..7ecb903b914eac2579d3760b5fd78a0334f13530
--- /dev/null
+++ b/pfam_gap_rates/CRAL_TRIO.gap.json
@@ -0,0 +1 @@
+{"family": "CRAL_TRIO", "n_seqs": 4056, "length": 182, "gap_rates": [0.8883136094674556, 0.6861439842209073, 0.5675542406311637, 0.4849605522682446, 0.4319526627218935, 0.3698224852071006, 0.3261834319526627, 0.29659763313609466, 0.27218934911242604, 0.24753451676528598, 0.22830374753451677, 0.21277120315581854, 0.1994575936883629, 0.9460059171597633, 0.1871301775147929, 0.17702169625246547, 0.16469428007889547, 0.15853057199211046, 0.15384615384615385, 0.14916173570019725, 0.14201183431952663, 0.13782051282051283, 0.1346153846153846, 0.1333826429980276, 0.13683431952662722, 0.13165680473372782, 0.1294378698224852, 0.9489644970414202, 0.14299802761341224, 0.1309171597633136, 0.1269723865877712, 0.1259861932938856, 0.122534516765286, 0.6565581854043393, 0.8111439842209073, 0.9326923076923077, 0.6807199211045365, 0.6326429980276134, 0.11858974358974358, 0.13683431952662722, 0.13584812623274162, 0.8424556213017751, 0.24186390532544377, 0.20438856015779092, 0.9408284023668639, 0.9445266272189349, 0.9494575936883629, 0.9410749506903353, 0.9408284023668639, 0.09985207100591716, 0.09319526627218935, 0.08925049309664694, 0.08801775147928995, 0.08579881656804733, 0.08481262327416174, 0.08431952662721894, 0.08357988165680473, 0.08210059171597633, 0.08012820512820513, 0.07963510848126233, 0.08357988165680473, 0.11883629191321499, 0.10626232741617357, 0.19995069033530571, 0.9492110453648915, 0.11908284023668639, 0.1269723865877712, 0.1247534516765286, 0.11711045364891519, 0.6703648915187377, 0.7029092702169625, 0.8190335305719921, 0.9437869822485208, 0.7566568047337278, 0.6955128205128205, 0.6089743589743589, 0.5293392504930966, 0.3229783037475345, 0.07988165680473373, 0.07026627218934911, 0.0604043392504931, 0.05793885601577909, 0.05670611439842209, 0.05473372781065089, 0.052021696252465485, 0.05128205128205128, 0.050788954635108484, 0.05103550295857988, 0.05054240631163708, 0.05054240631163708, 0.050788954635108484, 0.05103550295857988, 0.05152859960552268, 0.17135108481262326, 0.10108481262327416, 0.1220414201183432, 0.08308678500986193, 0.08801775147928995, 0.44822485207100593, 0.3915187376725838, 0.2983234714003945, 0.730276134122288, 0.048323471400394474, 0.04659763313609468, 0.04462524654832347, 0.04240631163708087, 0.04265285996055227, 0.04215976331360947, 0.04117357001972387, 0.04117357001972387, 0.04339250493096647, 0.04215976331360947, 0.04043392504930966, 0.03920118343195266, 0.038461538461538464, 0.03550295857988166, 0.03229783037475345, 0.03279092702169625, 0.03205128205128205, 0.03007889546351085, 0.029832347140039447, 0.03007889546351085, 0.029092702169625246, 0.03155818540433925, 0.03205128205128205, 0.03155818540433925, 0.033037475345167655, 0.03254437869822485, 0.03550295857988166, 0.03722879684418146, 0.03821499013806706, 0.03698224852071006, 0.04215976331360947, 0.041913214990138066, 0.04265285996055227, 0.036242603550295856, 0.03599605522682446, 0.03722879684418146, 0.03648915187376726, 0.03994082840236687, 0.03994082840236687, 0.04437869822485207, 0.04339250493096647, 0.044132149901380674, 0.04561143984220907, 0.04955621301775148, 0.05276134122287968, 0.0648422090729783, 0.05793885601577909, 0.05719921104536489, 0.0589250493096647, 0.059664694280078895, 0.0626232741617357, 0.0645956607495069, 0.0670611439842209, 0.1903353057199211, 0.10305719921104536, 0.30547337278106507, 0.24778106508875739, 0.3296351084812623, 0.5382149901380671, 0.2818047337278107, 0.9243096646942801, 0.9068047337278107, 0.20685404339250493, 0.11168639053254438, 0.11094674556213018, 0.11341222879684418, 0.11563116370808678, 0.11760355029585799, 0.12179487179487179, 0.13708086785009863, 0.1351084812623274, 0.1346153846153846, 0.13288954635108483, 0.13609467455621302, 0.14398422090729784, 0.15433925049309666, 0.1765285996055227, 0.1942800788954635, 0.1992110453648915, 0.3831360946745562], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/CRCB.gap.json b/pfam_gap_rates/CRCB.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..863752031b9416220a6602c2beaa3db2c99e6adf
--- /dev/null
+++ b/pfam_gap_rates/CRCB.gap.json
@@ -0,0 +1 @@
+{"family": "CRCB", "n_seqs": 1808, "length": 136, "gap_rates": [0.831858407079646, 0.19579646017699115, 0.0790929203539823, 0.04424778761061947, 0.03650442477876106, 0.030973451327433628, 0.02765486725663717, 0.025995575221238937, 0.024889380530973452, 0.024889380530973452, 0.02267699115044248, 0.02101769911504425, 0.018805309734513276, 0.017699115044247787, 0.017699115044247787, 0.017699115044247787, 0.017699115044247787, 0.6482300884955752, 0.01825221238938053, 0.02820796460176991, 0.022123893805309734, 0.030973451327433628, 0.04756637168141593, 0.016039823008849558, 0.040376106194690266, 0.08241150442477876, 0.1592920353982301, 0.6244469026548672, 0.9120575221238938, 0.9380530973451328, 0.9480088495575221, 0.9269911504424779, 0.8694690265486725, 0.3805309734513274, 0.09845132743362832, 0.06969026548672566, 0.027101769911504425, 0.011061946902654867, 0.011615044247787611, 0.00995575221238938, 0.008849557522123894, 0.007190265486725664, 0.007190265486725664, 0.00663716814159292, 0.00663716814159292, 0.00663716814159292, 0.00663716814159292, 0.00663716814159292, 0.00663716814159292, 0.00663716814159292, 0.00663716814159292, 0.00663716814159292, 0.00497787610619469, 0.006084070796460177, 0.0038716814159292035, 0.009402654867256638, 0.015486725663716814, 0.017146017699115043, 0.02765486725663717, 0.08462389380530974, 0.13938053097345132, 0.3163716814159292, 0.8230088495575221, 0.9209070796460177, 0.9452433628318584, 0.9375, 0.8700221238938053, 0.7328539823008849, 0.19358407079646017, 0.10508849557522124, 0.03595132743362832, 0.02157079646017699, 0.015486725663716814, 0.014933628318584071, 0.009402654867256638, 0.00165929203539823, 0.9203539823008849, 0.9203539823008849, 0.922566371681416, 0.9341814159292036, 0.9446902654867256, 0.9496681415929203, 0.9402654867256637, 0.9258849557522124, 0.922566371681416, 0.9203539823008849, 0.9203539823008849, 0.0027654867256637168, 0.00165929203539823, 0.00165929203539823, 0.00165929203539823, 0.00165929203539823, 0.0011061946902654867, 0.00165929203539823, 0.00165929203539823, 0.00165929203539823, 0.0022123893805309734, 0.0022123893805309734, 0.0022123893805309734, 0.0038716814159292035, 0.0038716814159292035, 0.0038716814159292035, 0.0038716814159292035, 0.004424778761061947, 0.004424778761061947, 0.004424778761061947, 0.00497787610619469, 0.0055309734513274336, 0.008849557522123894, 0.0420353982300885, 0.06913716814159292, 0.07466814159292036, 0.10674778761061947, 0.1454646017699115, 0.10287610619469026, 0.09845132743362832, 0.08241150442477876, 0.06305309734513274, 0.053650442477876106, 0.05143805309734513, 0.05530973451327434, 0.05641592920353982, 0.05752212389380531, 0.05807522123893805, 0.05918141592920354, 0.06084070796460177, 0.06084070796460177, 0.06305309734513274, 0.06803097345132743, 0.07300884955752213, 0.08185840707964602, 0.08738938053097345, 0.10011061946902655, 0.12223451327433628, 0.15763274336283187, 0.3086283185840708], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/CRISPR_Cas2.gap.json b/pfam_gap_rates/CRISPR_Cas2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..643364a204db051b5052bf2c7857e2a6fa36b748
--- /dev/null
+++ b/pfam_gap_rates/CRISPR_Cas2.gap.json
@@ -0,0 +1 @@
+{"family": "CRISPR_Cas2", "n_seqs": 1055, "length": 81, "gap_rates": [0.500473933649289, 0.17725118483412322, 0.07488151658767772, 0.055924170616113746, 0.04928909952606635, 0.031279620853080566, 0.031279620853080566, 0.031279620853080566, 0.03033175355450237, 0.5630331753554503, 0.6018957345971564, 0.5658767772511848, 0.36018957345971564, 0.35734597156398107, 0.13933649289099526, 0.025592417061611375, 0.024644549763033177, 0.024644549763033177, 0.024644549763033177, 0.024644549763033177, 0.022748815165876776, 0.022748815165876776, 0.022748815165876776, 0.018957345971563982, 0.016113744075829384, 0.016113744075829384, 0.015165876777251185, 0.013270142180094787, 0.013270142180094787, 0.013270142180094787, 0.5042654028436019, 0.012322274881516588, 0.013270142180094787, 0.007582938388625593, 0.004739336492890996, 0.0037914691943127963, 0.0037914691943127963, 0.0037914691943127963, 0.0037914691943127963, 0.004739336492890996, 0.007582938388625593, 0.03033175355450237, 0.7516587677725118, 0.07488151658767772, 0.09573459715639811, 0.11563981042654028, 0.12132701421800948, 0.12322274881516587, 0.13270142180094788, 0.13933649289099526, 0.14502369668246445, 0.14786729857819905, 0.15829383886255924, 0.16398104265402844, 0.17061611374407584, 0.18009478672985782, 0.18672985781990523, 0.195260663507109, 0.20568720379146918, 0.20853080568720378, 0.2104265402843602, 0.21137440758293838, 0.2161137440758294, 0.2161137440758294, 0.4928909952606635, 0.21421800947867298, 0.21421800947867298, 0.2161137440758294, 0.2161137440758294, 0.21800947867298578, 0.22369668246445498, 0.22559241706161137, 0.22654028436018958, 0.24739336492890995, 0.28056872037914693, 0.32037914691943126, 0.36208530805687206, 0.418957345971564, 0.4777251184834123, 0.5914691943127962, 0.9014218009478673], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/CRISPR_assoc.gap.json b/pfam_gap_rates/CRISPR_assoc.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..3dde61350527eb801d5046fdcde9aca975a4c585
--- /dev/null
+++ b/pfam_gap_rates/CRISPR_assoc.gap.json
@@ -0,0 +1 @@
+{"family": "CRISPR_assoc", "n_seqs": 220, "length": 316, "gap_rates": [0.43636363636363634, 0.2545454545454545, 0.21363636363636362, 0.18636363636363637, 0.17727272727272728, 0.17727272727272728, 0.16818181818181818, 0.16818181818181818, 0.16363636363636364, 0.16818181818181818, 0.17272727272727273, 0.17272727272727273, 0.18636363636363637, 0.20454545454545456, 0.2, 0.7863636363636364, 0.8227272727272728, 0.9045454545454545, 0.9181818181818182, 0.9136363636363637, 0.8863636363636364, 0.7863636363636364, 0.7863636363636364, 0.18636363636363637, 0.17272727272727273, 0.16363636363636364, 0.1318181818181818, 0.08181818181818182, 0.06818181818181818, 0.06818181818181818, 0.06363636363636363, 0.05909090909090909, 0.05454545454545454, 0.05454545454545454, 0.05454545454545454, 0.05454545454545454, 0.05454545454545454, 0.05, 0.05, 0.05, 0.05, 0.05, 0.05, 0.06818181818181818, 0.1590909090909091, 0.34545454545454546, 0.16818181818181818, 0.1318181818181818, 0.23636363636363636, 0.1590909090909091, 0.7227272727272728, 0.8909090909090909, 0.95, 0.9227272727272727, 0.7909090909090909, 0.5818181818181818, 0.1, 0.09090909090909091, 0.09090909090909091, 0.05, 0.05, 0.05, 0.05, 0.05454545454545454, 0.05454545454545454, 0.8909090909090909, 0.9409090909090909, 0.9454545454545454, 0.9363636363636364, 0.7772727272727272, 0.4727272727272727, 0.20454545454545456, 0.16818181818181818, 0.14545454545454545, 0.1, 0.045454545454545456, 0.045454545454545456, 0.04090909090909091, 0.03636363636363636, 0.03636363636363636, 0.03636363636363636, 0.03636363636363636, 0.03636363636363636, 0.03636363636363636, 0.03636363636363636, 0.03636363636363636, 0.04090909090909091, 0.045454545454545456, 0.40454545454545454, 0.32727272727272727, 0.42272727272727273, 0.4818181818181818, 0.6454545454545455, 0.7181818181818181, 0.8409090909090909, 0.9272727272727272, 0.9409090909090909, 0.9181818181818182, 0.8136363636363636, 0.6636363636363637, 0.4909090909090909, 0.43636363636363634, 0.39545454545454545, 0.12727272727272726, 0.05909090909090909, 0.045454545454545456, 0.03636363636363636, 0.03636363636363636, 0.03636363636363636, 0.04090909090909091, 0.04090909090909091, 0.2863636363636364, 0.06818181818181818, 0.08181818181818182, 0.06818181818181818, 0.045454545454545456, 0.04090909090909091, 0.045454545454545456, 0.04090909090909091, 0.031818181818181815, 0.031818181818181815, 0.031818181818181815, 0.031818181818181815, 0.03636363636363636, 0.02727272727272727, 0.02727272727272727, 0.02727272727272727, 0.02727272727272727, 0.022727272727272728, 0.022727272727272728, 0.022727272727272728, 0.022727272727272728, 0.022727272727272728, 0.022727272727272728, 0.8090909090909091, 0.8136363636363636, 0.8136363636363636, 0.8363636363636363, 0.8454545454545455, 0.9090909090909091, 0.8590909090909091, 0.8454545454545455, 0.8318181818181818, 0.8136363636363636, 0.8136363636363636, 0.8, 0.15, 0.18181818181818182, 0.21363636363636362, 0.20454545454545456, 0.38181818181818183, 0.4954545454545455, 0.5545454545454546, 0.5409090909090909, 0.740909090909091, 0.8045454545454546, 0.8318181818181818, 0.8727272727272727, 0.8818181818181818, 0.9181818181818182, 0.9454545454545454, 0.95, 0.95, 0.9318181818181818, 0.9136363636363637, 0.8727272727272727, 0.8681818181818182, 0.8272727272727273, 0.7727272727272727, 0.6863636363636364, 0.4909090909090909, 0.5636363636363636, 0.5045454545454545, 0.37272727272727274, 0.2818181818181818, 0.21818181818181817, 0.10454545454545454, 0.06818181818181818, 0.07727272727272727, 0.06818181818181818, 0.06818181818181818, 0.06363636363636363, 0.06363636363636363, 0.06818181818181818, 0.15454545454545454, 0.8772727272727273, 0.8863636363636364, 0.8863636363636364, 0.8909090909090909, 0.9045454545454545, 0.9227272727272727, 0.9409090909090909, 0.9454545454545454, 0.95, 0.9454545454545454, 0.9409090909090909, 0.9363636363636364, 0.9181818181818182, 0.9, 0.8909090909090909, 0.8863636363636364, 0.8818181818181818, 0.8681818181818182, 0.01818181818181818, 0.01818181818181818, 0.01818181818181818, 0.013636363636363636, 0.013636363636363636, 0.013636363636363636, 0.013636363636363636, 0.013636363636363636, 0.013636363636363636, 0.013636363636363636, 0.013636363636363636, 0.013636363636363636, 0.013636363636363636, 0.95, 0.013636363636363636, 0.02727272727272727, 0.02727272727272727, 0.013636363636363636, 0.022727272727272728, 0.05, 0.11363636363636363, 0.08181818181818182, 0.19545454545454546, 0.2318181818181818, 0.6590909090909091, 0.7181818181818181, 0.7818181818181819, 0.8272727272727273, 0.85, 0.9227272727272727, 0.9409090909090909, 0.9454545454545454, 0.95, 0.95, 0.9409090909090909, 0.9318181818181818, 0.8818181818181818, 0.8409090909090909, 0.8, 0.759090909090909, 0.6818181818181818, 0.6272727272727273, 0.5818181818181818, 0.6909090909090909, 0.2863636363636364, 0.1409090909090909, 0.031818181818181815, 0.031818181818181815, 0.02727272727272727, 0.01818181818181818, 0.00909090909090909, 0.00909090909090909, 0.00909090909090909, 0.00909090909090909, 0.00909090909090909, 0.00909090909090909, 0.01818181818181818, 0.01818181818181818, 0.022727272727272728, 0.09090909090909091, 0.1318181818181818, 0.10909090909090909, 0.16363636363636364, 0.5772727272727273, 0.42272727272727273, 0.23636363636363636, 0.8090909090909091, 0.9272727272727272, 0.8545454545454545, 0.6681818181818182, 0.00909090909090909, 0.00909090909090909, 0.00909090909090909, 0.00909090909090909, 0.013636363636363636, 0.013636363636363636, 0.00909090909090909, 0.00909090909090909, 0.00909090909090909, 0.00909090909090909, 0.00909090909090909, 0.00909090909090909, 0.00909090909090909, 0.00909090909090909, 0.00909090909090909, 0.00909090909090909, 0.00909090909090909, 0.00909090909090909, 0.00909090909090909, 0.00909090909090909, 0.00909090909090909, 0.00909090909090909, 0.00909090909090909, 0.00909090909090909, 0.00909090909090909, 0.00909090909090909, 0.00909090909090909, 0.00909090909090909, 0.00909090909090909, 0.00909090909090909, 0.00909090909090909, 0.00909090909090909, 0.00909090909090909, 0.00909090909090909, 0.00909090909090909, 0.00909090909090909, 0.00909090909090909, 0.00909090909090909, 0.01818181818181818, 0.02727272727272727, 0.02727272727272727, 0.05454545454545454, 0.19545454545454546], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/CSRNP_N.gap.json b/pfam_gap_rates/CSRNP_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e2ed4c17e6ea7aa6b1c4fe7e9984202927727f81
--- /dev/null
+++ b/pfam_gap_rates/CSRNP_N.gap.json
@@ -0,0 +1 @@
+{"family": "CSRNP_N", "n_seqs": 154, "length": 252, "gap_rates": [0.7987012987012987, 0.44155844155844154, 0.3181818181818182, 0.24025974025974026, 0.24025974025974026, 0.24025974025974026, 0.24025974025974026, 0.24025974025974026, 0.24025974025974026, 0.24025974025974026, 0.24025974025974026, 0.24025974025974026, 0.24025974025974026, 0.24025974025974026, 0.24025974025974026, 0.24025974025974026, 0.24025974025974026, 0.24025974025974026, 0.24025974025974026, 0.24025974025974026, 0.24025974025974026, 0.24025974025974026, 0.24025974025974026, 0.24025974025974026, 0.24025974025974026, 0.24025974025974026, 0.24675324675324675, 0.23376623376623376, 0.24025974025974026, 0.24025974025974026, 0.24025974025974026, 0.24025974025974026, 0.24025974025974026, 0.24025974025974026, 0.24025974025974026, 0.24675324675324675, 0.24675324675324675, 0.24675324675324675, 0.24675324675324675, 0.24675324675324675, 0.24025974025974026, 0.24025974025974026, 0.2532467532467532, 0.2532467532467532, 0.2532467532467532, 0.2532467532467532, 0.2532467532467532, 0.2727272727272727, 0.2987012987012987, 0.2987012987012987, 0.2987012987012987, 0.2987012987012987, 0.2987012987012987, 0.3116883116883117, 0.3116883116883117, 0.3246753246753247, 0.3181818181818182, 0.3181818181818182, 0.8961038961038961, 0.8961038961038961, 0.9025974025974026, 0.9025974025974026, 0.9025974025974026, 0.9090909090909091, 0.9090909090909091, 0.9090909090909091, 0.9090909090909091, 0.9090909090909091, 0.9090909090909091, 0.9090909090909091, 0.948051948051948, 0.9090909090909091, 0.9090909090909091, 0.9090909090909091, 0.9090909090909091, 0.9090909090909091, 0.9090909090909091, 0.9090909090909091, 0.9090909090909091, 0.9025974025974026, 0.9025974025974026, 0.9025974025974026, 0.8961038961038961, 0.8961038961038961, 0.33116883116883117, 0.35714285714285715, 0.34415584415584416, 0.33766233766233766, 0.35064935064935066, 0.34415584415584416, 0.34415584415584416, 0.34415584415584416, 0.34415584415584416, 0.34415584415584416, 0.34415584415584416, 0.34415584415584416, 0.35714285714285715, 0.37662337662337664, 0.38961038961038963, 0.4025974025974026, 0.4025974025974026, 0.44805194805194803, 0.45454545454545453, 0.948051948051948, 0.44805194805194803, 0.44155844155844154, 0.4090909090909091, 0.38961038961038963, 0.38311688311688313, 0.4025974025974026, 0.4090909090909091, 0.37012987012987014, 0.36363636363636365, 0.37662337662337664, 0.38311688311688313, 0.38311688311688313, 0.38311688311688313, 0.487012987012987, 0.4675324675324675, 0.487012987012987, 0.4675324675324675, 0.42207792207792205, 0.38961038961038963, 0.35064935064935066, 0.33116883116883117, 0.3181818181818182, 0.3116883116883117, 0.3116883116883117, 0.3116883116883117, 0.3246753246753247, 0.9415584415584416, 0.948051948051948, 0.948051948051948, 0.6298701298701299, 0.525974025974026, 0.45454545454545453, 0.43506493506493504, 0.4025974025974026, 0.2922077922077922, 0.2857142857142857, 0.2922077922077922, 0.2792207792207792, 0.2857142857142857, 0.2792207792207792, 0.2792207792207792, 0.2727272727272727, 0.2727272727272727, 0.2662337662337662, 0.2597402597402597, 0.2532467532467532, 0.2597402597402597, 0.2597402597402597, 0.2597402597402597, 0.2532467532467532, 0.2532467532467532, 0.2532467532467532, 0.2532467532467532, 0.2532467532467532, 0.24675324675324675, 0.24675324675324675, 0.2532467532467532, 0.24025974025974026, 0.2597402597402597, 0.2727272727272727, 0.2597402597402597, 0.2662337662337662, 0.24025974025974026, 0.23376623376623376, 0.23376623376623376, 0.23376623376623376, 0.23376623376623376, 0.23376623376623376, 0.23376623376623376, 0.23376623376623376, 0.23376623376623376, 0.23376623376623376, 0.23376623376623376, 0.23376623376623376, 0.23376623376623376, 0.23376623376623376, 0.23376623376623376, 0.23376623376623376, 0.23376623376623376, 0.23376623376623376, 0.23376623376623376, 0.23376623376623376, 0.23376623376623376, 0.8051948051948052, 0.23376623376623376, 0.24675324675324675, 0.24025974025974026, 0.24025974025974026, 0.24025974025974026, 0.24025974025974026, 0.24675324675324675, 0.24025974025974026, 0.24025974025974026, 0.24025974025974026, 0.24025974025974026, 0.24025974025974026, 0.24025974025974026, 0.24025974025974026, 0.24025974025974026, 0.23376623376623376, 0.22727272727272727, 0.21428571428571427, 0.2077922077922078, 0.22077922077922077, 0.23376623376623376, 0.23376623376623376, 0.22727272727272727, 0.22727272727272727, 0.22727272727272727, 0.22727272727272727, 0.22727272727272727, 0.22727272727272727, 0.22727272727272727, 0.948051948051948, 0.22727272727272727, 0.24025974025974026, 0.23376623376623376, 0.22727272727272727, 0.22727272727272727, 0.22727272727272727, 0.22727272727272727, 0.22727272727272727, 0.22077922077922077, 0.22077922077922077, 0.22077922077922077, 0.22077922077922077, 0.22077922077922077, 0.22077922077922077, 0.22077922077922077, 0.22727272727272727, 0.22727272727272727, 0.22727272727272727, 0.22727272727272727, 0.23376623376623376, 0.23376623376623376, 0.23376623376623376, 0.23376623376623376, 0.24025974025974026, 0.24025974025974026, 0.24025974025974026, 0.24025974025974026, 0.24675324675324675, 0.24675324675324675, 0.24675324675324675, 0.2922077922077922, 0.35714285714285715, 0.44155844155844154, 0.6233766233766234], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/CT_C_D.gap.json b/pfam_gap_rates/CT_C_D.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..eafd73ba7d406722d7ba9ca41dffa4feac171f73
--- /dev/null
+++ b/pfam_gap_rates/CT_C_D.gap.json
@@ -0,0 +1 @@
+{"family": "CT_C_D", "n_seqs": 1006, "length": 241, "gap_rates": [0.8459244532803181, 0.33300198807157055, 0.10834990059642147, 0.07654075546719682, 0.06858846918489066, 0.05864811133200795, 0.05666003976143141, 0.055666003976143144, 0.05467196819085487, 0.05268389662027833, 0.048707753479125246, 0.04671968190854871, 0.041749502982107355, 0.040755467196819085, 0.03876739562624255, 0.18886679920477137, 0.7415506958250497, 0.19582504970178927, 0.19681908548707752, 0.19681908548707752, 0.18687872763419483, 0.18290258449304175, 0.04473161033797217, 0.041749502982107355, 0.03777335984095427, 0.03479125248508946, 0.033797216699801194, 0.032803180914512925, 0.02882703777335984, 0.02584493041749503, 0.02485089463220676, 0.02485089463220676, 0.02485089463220676, 0.02485089463220676, 0.020874751491053677, 0.020874751491053677, 0.020874751491053677, 0.12027833001988071, 0.09840954274353876, 0.9333996023856859, 0.9433399602385686, 0.9403578528827038, 0.9264413518886679, 0.0268389662027833, 0.02186878727634195, 0.02584493041749503, 0.020874751491053677, 0.02982107355864811, 0.02286282306163022, 0.020874751491053677, 0.018886679920477135, 0.017892644135188866, 0.017892644135188866, 0.017892644135188866, 0.017892644135188866, 0.017892644135188866, 0.017892644135188866, 0.017892644135188866, 0.017892644135188866, 0.02186878727634195, 0.02485089463220676, 0.032803180914512925, 0.04473161033797217, 0.027833001988071572, 0.02485089463220676, 0.12326043737574553, 0.9055666003976143, 0.9145129224652088, 0.9284294234592445, 0.9423459244532804, 0.9314115308151093, 0.9224652087475149, 0.9085487077534792, 0.8996023856858847, 0.039761431411530816, 0.0268389662027833, 0.02385685884691849, 0.02286282306163022, 0.02186878727634195, 0.020874751491053677, 0.019880715705765408, 0.018886679920477135, 0.017892644135188866, 0.02186878727634195, 0.020874751491053677, 0.019880715705765408, 0.027833001988071572, 0.033797216699801194, 0.03876739562624255, 0.6381709741550696, 0.9184890656063618, 0.5347912524850894, 0.07256461232604373, 0.06660039761431412, 0.05069582504970179, 0.03876739562624255, 0.030815109343936383, 0.02882703777335984, 0.0268389662027833, 0.03180914512922465, 0.04970178926441352, 0.11630218687872763, 0.08349900596421471, 0.02186878727634195, 0.018886679920477135, 0.018886679920477135, 0.018886679920477135, 0.017892644135188866, 0.017892644135188866, 0.017892644135188866, 0.017892644135188866, 0.2345924453280318, 0.2355864811133201, 0.23359840954274355, 0.019880715705765408, 0.017892644135188866, 0.6968190854870775, 0.6968190854870775, 0.6968190854870775, 0.6968190854870775, 0.6968190854870775, 0.6978131212723658, 0.6978131212723658, 0.6988071570576541, 0.7405566600397614, 0.7415506958250497, 0.7365805168986084, 0.6978131212723658, 0.6978131212723658, 0.6968190854870775, 0.6968190854870775, 0.6968190854870775, 0.6968190854870775, 0.6968190854870775, 0.6958250497017893, 0.018886679920477135, 0.019880715705765408, 0.019880715705765408, 0.020874751491053677, 0.019880715705765408, 0.018886679920477135, 0.018886679920477135, 0.018886679920477135, 0.020874751491053677, 0.017892644135188866, 0.017892644135188866, 0.019880715705765408, 0.7465208747514911, 0.02286282306163022, 0.020874751491053677, 0.018886679920477135, 0.018886679920477135, 0.017892644135188866, 0.017892644135188866, 0.018886679920477135, 0.018886679920477135, 0.019880715705765408, 0.019880715705765408, 0.019880715705765408, 0.019880715705765408, 0.018886679920477135, 0.019880715705765408, 0.018886679920477135, 0.018886679920477135, 0.018886679920477135, 0.018886679920477135, 0.018886679920477135, 0.8001988071570576, 0.017892644135188866, 0.017892644135188866, 0.017892644135188866, 0.019880715705765408, 0.017892644135188866, 0.017892644135188866, 0.018886679920477135, 0.018886679920477135, 0.018886679920477135, 0.02186878727634195, 0.02286282306163022, 0.02385685884691849, 0.02485089463220676, 0.02584493041749503, 0.6868787276341949, 0.6848906560636183, 0.02485089463220676, 0.020874751491053677, 0.020874751491053677, 0.02186878727634195, 0.02186878727634195, 0.02385685884691849, 0.02485089463220676, 0.02385685884691849, 0.02385685884691849, 0.02485089463220676, 0.02186878727634195, 0.02385685884691849, 0.019880715705765408, 0.019880715705765408, 0.020874751491053677, 0.020874751491053677, 0.02186878727634195, 0.02286282306163022, 0.02385685884691849, 0.02385685884691849, 0.02385685884691849, 0.02385685884691849, 0.02385685884691849, 0.02385685884691849, 0.02385685884691849, 0.02385685884691849, 0.02385685884691849, 0.02385685884691849, 0.02385685884691849, 0.02385685884691849, 0.02385685884691849, 0.02485089463220676, 0.02584493041749503, 0.02584493041749503, 0.02584493041749503, 0.027833001988071572, 0.027833001988071572, 0.02882703777335984, 0.02882703777335984, 0.02882703777335984, 0.030815109343936383, 0.033797216699801194, 0.28926441351888665, 0.04572564612326044, 0.05069582504970179, 0.05069582504970179, 0.0536779324055666, 0.05864811133200795, 0.06958250497017893, 0.13817097415506957, 0.15109343936381708, 0.20974155069582506, 0.2912524850894632, 0.34095427435387676, 0.39165009940357853, 0.45825049701789267, 0.6620278330019881], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/CW_binding_2.gap.json b/pfam_gap_rates/CW_binding_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e4c25c1cf73d06b661844d0a4648159d2697f139
--- /dev/null
+++ b/pfam_gap_rates/CW_binding_2.gap.json
@@ -0,0 +1 @@
+{"family": "CW_binding_2", "n_seqs": 1654, "length": 116, "gap_rates": [0.16989117291414751, 0.05985489721886336, 0.032648125755743655, 0.024788391777509067, 0.018137847642079808, 0.013301088270858524, 0.012696493349455865, 0.012696493349455865, 0.012091898428053204, 0.011487303506650543, 0.010278113663845224, 0.009673518742442563, 0.009673518742442563, 0.009068923821039904, 0.009068923821039904, 0.009068923821039904, 0.27690447400241835, 0.012091898428053204, 0.004232164449818622, 0.006045949214026602, 0.009673518742442563, 0.041112454655380895, 0.373639661426844, 0.779322853688029, 0.9020556227327691, 0.9443772672309553, 0.9334945586457074, 0.8609431680773881, 0.6172914147521161, 0.1414752116082225, 0.012091898428053204, 0.007859733978234583, 0.005441354292623942, 0.003022974607013301, 0.9425634824667473, 0.024788391777509067, 0.02357920193470375, 0.0036275695284159614, 0.06106408706166868, 0.9153567110036276, 0.8536880290205562, 0.0471584038694075, 0.0036275695284159614, 0.0012091898428053204, 0.0012091898428053204, 0.0012091898428053204, 0.0006045949214026602, 0.0006045949214026602, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0012091898428053204, 0.05199516324062878, 0.05985489721886336, 0.0471584038694075, 0.010882708585247884, 0.005441354292623942, 0.0018137847642079807, 0.0024183796856106408, 0.0024183796856106408, 0.0024183796856106408, 0.0024183796856106408, 0.9117291414752116, 0.3216444981862152, 0.003022974607013301, 0.18440145102781136, 0.6088270858524788, 0.8579201934703748, 0.37726723095526, 0.2581620314389359, 0.2430471584038694, 0.8458282950423216, 0.6233373639661427, 0.5501813784764208, 0.7146311970979444, 0.8929866989117291, 0.9480048367593712, 0.7926239419588875, 0.6318016928657799, 0.3282950423216445, 0.4788391777509069, 0.4969770253929867, 0.4437726723095526, 0.02902055622732769, 0.06952841596130592, 0.13845223700120918, 0.20858524788391777, 0.3941958887545345, 0.5199516324062878, 0.837968561064087, 0.9328899637243047, 0.9449818621523579, 0.8821039903264812, 0.5779927448609432, 0.4455864570737606, 0.25211608222490933, 0.1626360338573156, 0.08948004836759371, 0.06106408706166868, 0.022974607013301087, 0.02357920193470375, 0.02599758162031439, 0.026602176541717048, 0.02781136638452237, 0.03688029020556227, 0.056831922611850064, 0.07315598548972188, 0.08343409915356712, 0.10399032648125756, 0.11668681983071343, 0.13784764207980654, 0.21221281741233375, 0.37605804111245467, 0.7859733978234583], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/CZB.gap.json b/pfam_gap_rates/CZB.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..0b89fc8b9e0aa725cc0993d62a25f02f70a64707
--- /dev/null
+++ b/pfam_gap_rates/CZB.gap.json
@@ -0,0 +1 @@
+{"family": "CZB", "n_seqs": 553, "length": 80, "gap_rates": [0.09041591320072333, 0.0867992766726944, 0.06690777576853527, 0.06148282097649186, 0.05244122965641953, 0.05063291139240506, 0.04701627486437613, 0.04159132007233273, 0.0379746835443038, 0.034358047016274866, 0.0325497287522604, 0.027124773960216998, 0.027124773960216998, 0.02531645569620253, 0.02531645569620253, 0.039783001808318265, 0.03074141048824593, 0.04701627486437613, 0.02531645569620253, 0.2694394213381555, 0.7757685352622061, 0.9439421338155516, 0.5406871609403255, 0.08860759493670886, 0.0054249547920434, 0.22784810126582278, 0.5858951175406871, 0.9150090415913201, 0.7920433996383364, 0.35443037974683544, 0.20433996383363473, 0.003616636528028933, 0.003616636528028933, 0.0018083182640144665, 0.0018083182640144665, 0.0018083182640144665, 0.0, 0.0, 0.0, 0.0, 0.8137432188065099, 0.0, 0.945750452079566, 0.8987341772151899, 0.0325497287522604, 0.0705244122965642, 0.06690777576853527, 0.04159132007233273, 0.05244122965641953, 0.20253164556962025, 0.18083182640144665, 0.189873417721519, 0.007233273056057866, 0.07233273056057866, 0.6708860759493671, 0.8047016274864376, 0.8372513562386981, 0.705244122965642, 0.6311030741410488, 0.023508137432188065, 0.003616636528028933, 0.0018083182640144665, 0.0018083182640144665, 0.0018083182640144665, 0.0018083182640144665, 0.0018083182640144665, 0.0018083182640144665, 0.0018083182640144665, 0.0018083182640144665, 0.0018083182640144665, 0.0018083182640144665, 0.0018083182640144665, 0.0018083182640144665, 0.0018083182640144665, 0.0054249547920434, 0.0162748643761302, 0.0650994575045208, 0.14466546112115733, 0.23869801084990958, 0.7215189873417721], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/CaATP_NAI.gap.json b/pfam_gap_rates/CaATP_NAI.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..0998c21ee5bf840a03f8520acf289db825bdaede
--- /dev/null
+++ b/pfam_gap_rates/CaATP_NAI.gap.json
@@ -0,0 +1 @@
+{"family": "CaATP_NAI", "n_seqs": 201, "length": 48, "gap_rates": [0.5870646766169154, 0.30845771144278605, 0.12935323383084577, 0.0945273631840796, 0.07960199004975124, 0.7611940298507462, 0.06965174129353234, 0.06467661691542288, 0.05970149253731343, 0.8208955223880597, 0.05970149253731343, 0.05472636815920398, 0.05970149253731343, 0.05472636815920398, 0.04975124378109453, 0.03980099502487562, 0.03980099502487562, 0.03482587064676617, 0.03482587064676617, 0.03482587064676617, 0.029850746268656716, 0.029850746268656716, 0.03482587064676617, 0.009950248756218905, 0.004975124378109453, 0.0, 0.417910447761194, 0.8606965174129353, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.004975124378109453, 0.004975124378109453, 0.004975124378109453, 0.009950248756218905, 0.009950248756218905, 0.009950248756218905, 0.01990049751243781, 0.01990049751243781, 0.029850746268656716, 0.029850746268656716, 0.03980099502487562, 0.03980099502487562, 0.07462686567164178, 0.3880597014925373], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Cad.gap.json b/pfam_gap_rates/Cad.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f8e4859e6f3d533ed7c69d0391a6e2d3c45ab009
--- /dev/null
+++ b/pfam_gap_rates/Cad.gap.json
@@ -0,0 +1 @@
+{"family": "Cad", "n_seqs": 217, "length": 215, "gap_rates": [0.5714285714285714, 0.17972350230414746, 0.055299539170506916, 0.055299539170506916, 0.055299539170506916, 0.055299539170506916, 0.055299539170506916, 0.055299539170506916, 0.055299539170506916, 0.055299539170506916, 0.055299539170506916, 0.055299539170506916, 0.04608294930875576, 0.04608294930875576, 0.04608294930875576, 0.04608294930875576, 0.04608294930875576, 0.04608294930875576, 0.04608294930875576, 0.059907834101382486, 0.8571428571428571, 0.23963133640552994, 0.15668202764976957, 0.1336405529953917, 0.9078341013824884, 0.1152073732718894, 0.05069124423963134, 0.9170506912442397, 0.9170506912442397, 0.04608294930875576, 0.04608294930875576, 0.04608294930875576, 0.04608294930875576, 0.04608294930875576, 0.041474654377880185, 0.04608294930875576, 0.041474654377880185, 0.041474654377880185, 0.041474654377880185, 0.041474654377880185, 0.041474654377880185, 0.041474654377880185, 0.041474654377880185, 0.041474654377880185, 0.041474654377880185, 0.03686635944700461, 0.03686635944700461, 0.03686635944700461, 0.04608294930875576, 0.07373271889400922, 0.05069124423963134, 0.041474654377880185, 0.8986175115207373, 0.03686635944700461, 0.041474654377880185, 0.041474654377880185, 0.03686635944700461, 0.03686635944700461, 0.03225806451612903, 0.04608294930875576, 0.05069124423963134, 0.07834101382488479, 0.2488479262672811, 0.2350230414746544, 0.04608294930875576, 0.05069124423963134, 0.03225806451612903, 0.03225806451612903, 0.03225806451612903, 0.03225806451612903, 0.03225806451612903, 0.03225806451612903, 0.03225806451612903, 0.03225806451612903, 0.03225806451612903, 0.059907834101382486, 0.06912442396313365, 0.08755760368663594, 0.12903225806451613, 0.9400921658986175, 0.9308755760368663, 0.1336405529953917, 0.9493087557603687, 0.9400921658986175, 0.11981566820276497, 0.9078341013824884, 0.9124423963133641, 0.9032258064516129, 0.08755760368663594, 0.07373271889400922, 0.9078341013824884, 0.9493087557603687, 0.8110599078341014, 0.06451612903225806, 0.06451612903225806, 0.07373271889400922, 0.06451612903225806, 0.04608294930875576, 0.059907834101382486, 0.16129032258064516, 0.15668202764976957, 0.18433179723502305, 0.16129032258064516, 0.17511520737327188, 0.18433179723502305, 0.34101382488479265, 0.2626728110599078, 0.14285714285714285, 0.11059907834101383, 0.09216589861751152, 0.08294930875576037, 0.08755760368663594, 0.9447004608294931, 0.9493087557603687, 0.9447004608294931, 0.9447004608294931, 0.05069124423963134, 0.9308755760368663, 0.9308755760368663, 0.9308755760368663, 0.9308755760368663, 0.03686635944700461, 0.04608294930875576, 0.06912442396313365, 0.059907834101382486, 0.03225806451612903, 0.027649769585253458, 0.02304147465437788, 0.02304147465437788, 0.02304147465437788, 0.027649769585253458, 0.7557603686635944, 0.03225806451612903, 0.02304147465437788, 0.02304147465437788, 0.02304147465437788, 0.02304147465437788, 0.02304147465437788, 0.02304147465437788, 0.02304147465437788, 0.02304147465437788, 0.02304147465437788, 0.02304147465437788, 0.02304147465437788, 0.02304147465437788, 0.02304147465437788, 0.02304147465437788, 0.03225806451612903, 0.03225806451612903, 0.027649769585253458, 0.02304147465437788, 0.02304147465437788, 0.02304147465437788, 0.02304147465437788, 0.02304147465437788, 0.018433179723502304, 0.02304147465437788, 0.02304147465437788, 0.02304147465437788, 0.02304147465437788, 0.02304147465437788, 0.02304147465437788, 0.02304147465437788, 0.027649769585253458, 0.027649769585253458, 0.027649769585253458, 0.027649769585253458, 0.027649769585253458, 0.027649769585253458, 0.027649769585253458, 0.027649769585253458, 0.027649769585253458, 0.027649769585253458, 0.027649769585253458, 0.027649769585253458, 0.027649769585253458, 0.027649769585253458, 0.027649769585253458, 0.027649769585253458, 0.027649769585253458, 0.027649769585253458, 0.027649769585253458, 0.027649769585253458, 0.03225806451612903, 0.03225806451612903, 0.03225806451612903, 0.03225806451612903, 0.027649769585253458, 0.027649769585253458, 0.027649769585253458, 0.027649769585253458, 0.027649769585253458, 0.027649769585253458, 0.027649769585253458, 0.027649769585253458, 0.027649769585253458, 0.027649769585253458, 0.027649769585253458, 0.027649769585253458, 0.027649769585253458, 0.027649769585253458, 0.027649769585253458, 0.027649769585253458, 0.03686635944700461, 0.09216589861751152, 0.10138248847926268, 0.12442396313364056, 0.16589861751152074, 0.3686635944700461, 0.423963133640553, 0.4700460829493088, 0.4930875576036866, 0.5898617511520737, 0.7557603686635944, 0.9308755760368663], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/CarD_CdnL_TRCF.gap.json b/pfam_gap_rates/CarD_CdnL_TRCF.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..8379b953ef9a73571c358a860fddd320e10aec11
--- /dev/null
+++ b/pfam_gap_rates/CarD_CdnL_TRCF.gap.json
@@ -0,0 +1 @@
+{"family": "CarD_CdnL_TRCF", "n_seqs": 2768, "length": 127, "gap_rates": [0.13005780346820808, 0.04299132947976879, 0.01878612716763006, 0.014450867052023121, 0.011921965317919074, 0.011560693641618497, 0.010115606936416185, 0.008670520231213872, 0.008670520231213872, 0.008670520231213872, 0.007947976878612716, 0.007947976878612716, 0.008670520231213872, 0.007586705202312138, 0.0072254335260115606, 0.0072254335260115606, 0.006502890173410405, 0.005780346820809248, 0.005780346820809248, 0.005780346820809248, 0.9244942196531792, 0.9389450867052023, 0.9458092485549133, 0.944364161849711, 0.9328034682080925, 0.9151011560693642, 0.005780346820809248, 0.034320809248554913, 0.005780346820809248, 0.06069364161849711, 0.07947976878612717, 0.10043352601156069, 0.9353323699421965, 0.909320809248555, 0.08815028901734104, 0.07658959537572255, 0.05888728323699422, 0.003973988439306358, 0.008309248554913294, 0.003973988439306358, 0.0032514450867052024, 0.002890173410404624, 0.002890173410404624, 0.002890173410404624, 0.0025289017341040463, 0.0025289017341040463, 0.0025289017341040463, 0.9107658959537572, 0.9208815028901735, 0.9216040462427746, 0.9197976878612717, 0.6647398843930635, 0.6000722543352601, 0.23049132947976878, 0.009031791907514452, 0.002167630057803468, 0.0025289017341040463, 0.0025289017341040463, 0.002167630057803468, 0.002167630057803468, 0.002890173410404624, 0.002890173410404624, 0.002890173410404624, 0.003973988439306358, 0.0036127167630057803, 0.0036127167630057803, 0.7312138728323699, 0.6831647398843931, 0.0032514450867052024, 0.003973988439306358, 0.0032514450867052024, 0.0032514450867052024, 0.0036127167630057803, 0.003973988439306358, 0.004696531791907515, 0.0050578034682080926, 0.4638728323699422, 0.940028901734104, 0.3717485549132948, 0.2684248554913295, 0.2597543352601156, 0.01625722543352601, 0.016618497109826588, 0.013728323699421965, 0.008309248554913294, 0.009754335260115607, 0.006141618497109827, 0.6784682080924855, 0.6795520231213873, 0.680635838150289, 0.6813583815028902, 0.6828034682080925, 0.7388005780346821, 0.752528901734104, 0.7453034682080925, 0.7203757225433526, 0.682442196531792, 0.6813583815028902, 0.680635838150289, 0.6788294797687862, 0.6676300578034682, 0.006502890173410405, 0.011199421965317919, 0.012644508670520232, 0.012644508670520232, 0.012644508670520232, 0.013367052023121388, 0.013728323699421965, 0.014089595375722543, 0.014089595375722543, 0.014450867052023121, 0.015173410404624277, 0.015895953757225433, 0.01625722543352601, 0.016979768786127166, 0.01842485549132948, 0.01878612716763006, 0.019869942196531792, 0.021315028901734104, 0.022398843930635837, 0.02384393063583815, 0.024927745664739886, 0.02745664739884393, 0.029985549132947976, 0.04046242774566474, 0.10657514450867052, 0.4497832369942196], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Cas1_AcylT.gap.json b/pfam_gap_rates/Cas1_AcylT.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d3f4ecb2ec891a350056b3312578fae6103727b1
--- /dev/null
+++ b/pfam_gap_rates/Cas1_AcylT.gap.json
@@ -0,0 +1 @@
+{"family": "Cas1_AcylT", "n_seqs": 299, "length": 554, "gap_rates": [0.8996655518394648, 0.8595317725752508, 0.782608695652174, 0.6789297658862876, 0.6488294314381271, 0.6321070234113713, 0.6321070234113713, 0.6321070234113713, 0.6287625418060201, 0.6287625418060201, 0.6287625418060201, 0.6287625418060201, 0.6287625418060201, 0.6287625418060201, 0.6254180602006689, 0.6187290969899666, 0.6153846153846154, 0.6153846153846154, 0.6153846153846154, 0.6153846153846154, 0.6153846153846154, 0.6153846153846154, 0.6120401337792643, 0.6120401337792643, 0.6120401337792643, 0.6120401337792643, 0.7993311036789298, 0.7959866220735786, 0.9331103678929766, 0.9331103678929766, 0.9331103678929766, 0.9264214046822743, 0.802675585284281, 0.6187290969899666, 0.6020066889632107, 0.5953177257525084, 0.5919732441471572, 0.5919732441471572, 0.5953177257525084, 0.5919732441471572, 0.5919732441471572, 0.5886287625418061, 0.5886287625418061, 0.5886287625418061, 0.5852842809364549, 0.5852842809364549, 0.5785953177257525, 0.5785953177257525, 0.5819397993311036, 0.5852842809364549, 0.5852842809364549, 0.5919732441471572, 0.6287625418060201, 0.6454849498327759, 0.6321070234113713, 0.6287625418060201, 0.6053511705685619, 0.6086956521739131, 0.6220735785953178, 0.6354515050167224, 0.725752508361204, 0.7859531772575251, 0.7792642140468228, 0.7859531772575251, 0.6789297658862876, 0.7759197324414716, 0.7892976588628763, 0.802675585284281, 0.8127090301003345, 0.882943143812709, 0.8963210702341137, 0.9163879598662207, 0.9431438127090301, 0.9498327759197325, 0.9431438127090301, 0.9364548494983278, 0.903010033444816, 0.882943143812709, 0.8494983277591973, 0.8127090301003345, 0.7993311036789298, 0.782608695652174, 0.7725752508361204, 0.6020066889632107, 0.5250836120401338, 0.411371237458194, 0.3511705685618729, 0.3177257525083612, 0.2809364548494983, 0.27759197324414714, 0.27759197324414714, 0.27424749163879597, 0.27424749163879597, 0.26421404682274247, 0.25752508361204013, 0.25752508361204013, 0.25752508361204013, 0.2608695652173913, 0.25752508361204013, 0.25418060200668896, 0.25418060200668896, 0.2508361204013378, 0.2508361204013378, 0.2508361204013378, 0.2508361204013378, 0.24749163879598662, 0.24749163879598662, 0.24749163879598662, 0.24749163879598662, 0.24414715719063546, 0.2408026755852843, 0.2408026755852843, 0.2408026755852843, 0.2408026755852843, 0.2408026755852843, 0.2408026755852843, 0.2408026755852843, 0.2408026755852843, 0.2408026755852843, 0.2408026755852843, 0.2408026755852843, 0.23745819397993312, 0.23411371237458195, 0.23745819397993312, 0.23745819397993312, 0.745819397993311, 0.23411371237458195, 0.23076923076923078, 0.23411371237458195, 0.23411371237458195, 0.23411371237458195, 0.23076923076923078, 0.23411371237458195, 0.23411371237458195, 0.23411371237458195, 0.23411371237458195, 0.23411371237458195, 0.23411371237458195, 0.23411371237458195, 0.23411371237458195, 0.6321070234113713, 0.23411371237458195, 0.2408026755852843, 0.23745819397993312, 0.23411371237458195, 0.5986622073578596, 0.6053511705685619, 0.6354515050167224, 0.8294314381270903, 0.903010033444816, 0.9130434782608695, 0.9364548494983278, 0.9464882943143813, 0.939799331103679, 0.9297658862876255, 0.9130434782608695, 0.8896321070234113, 0.6521739130434783, 0.6153846153846154, 0.6053511705685619, 0.5986622073578596, 0.21739130434782608, 0.20735785953177258, 0.21070234113712374, 0.21070234113712374, 0.21070234113712374, 0.21070234113712374, 0.21070234113712374, 0.21070234113712374, 0.21070234113712374, 0.21070234113712374, 0.21070234113712374, 0.21070234113712374, 0.21070234113712374, 0.2040133779264214, 0.19732441471571907, 0.19732441471571907, 0.22073578595317725, 0.21070234113712374, 0.21739130434782608, 0.21739130434782608, 0.19732441471571907, 0.20066889632107024, 0.2040133779264214, 0.2040133779264214, 0.2040133779264214, 0.21739130434782608, 0.22073578595317725, 0.2140468227424749, 0.23076923076923078, 0.5284280936454849, 0.5551839464882943, 0.5250836120401338, 0.2140468227424749, 0.18394648829431437, 0.18729096989966554, 0.1806020066889632, 0.18394648829431437, 0.18394648829431437, 0.18394648829431437, 0.18729096989966554, 0.18729096989966554, 0.18729096989966554, 0.18394648829431437, 0.18394648829431437, 0.1806020066889632, 0.1806020066889632, 0.1806020066889632, 0.1806020066889632, 0.18394648829431437, 0.19063545150501673, 0.19063545150501673, 0.19063545150501673, 0.19063545150501673, 0.19063545150501673, 0.19063545150501673, 0.18729096989966554, 0.18394648829431437, 0.18394648829431437, 0.18394648829431437, 0.1939799331103679, 0.1939799331103679, 0.18729096989966554, 0.1806020066889632, 0.17725752508361203, 0.17725752508361203, 0.17725752508361203, 0.17725752508361203, 0.17391304347826086, 0.17391304347826086, 0.17725752508361203, 0.17725752508361203, 0.17725752508361203, 0.17725752508361203, 0.17391304347826086, 0.17391304347826086, 0.17391304347826086, 0.17725752508361203, 0.18394648829431437, 0.1806020066889632, 0.1806020066889632, 0.1806020066889632, 0.1806020066889632, 0.1806020066889632, 0.1806020066889632, 0.18394648829431437, 0.18394648829431437, 0.18394648829431437, 0.18394648829431437, 0.18394648829431437, 0.18394648829431437, 0.18729096989966554, 0.18394648829431437, 0.18394648829431437, 0.19063545150501673, 0.18729096989966554, 0.18729096989966554, 0.18729096989966554, 0.18729096989966554, 0.18729096989966554, 0.19063545150501673, 0.19063545150501673, 0.19063545150501673, 0.19063545150501673, 0.19063545150501673, 0.19063545150501673, 0.19063545150501673, 0.19063545150501673, 0.1939799331103679, 0.1939799331103679, 0.1939799331103679, 0.2040133779264214, 0.20066889632107024, 0.20066889632107024, 0.2040133779264214, 0.2040133779264214, 0.20735785953177258, 0.20735785953177258, 0.20735785953177258, 0.21739130434782608, 0.8193979933110368, 0.8160535117056856, 0.8160535117056856, 0.8060200668896321, 0.7926421404682275, 0.7959866220735786, 0.7792642140468228, 0.7591973244147158, 0.23745819397993312, 0.23411371237458195, 0.22742474916387959, 0.22742474916387959, 0.22742474916387959, 0.22742474916387959, 0.22742474916387959, 0.22073578595317725, 0.22742474916387959, 0.22408026755852842, 0.22408026755852842, 0.22408026755852842, 0.22073578595317725, 0.21739130434782608, 0.21739130434782608, 0.22073578595317725, 0.22073578595317725, 0.22408026755852842, 0.22408026755852842, 0.22408026755852842, 0.22073578595317725, 0.21739130434782608, 0.22073578595317725, 0.23076923076923078, 0.23076923076923078, 0.23076923076923078, 0.22742474916387959, 0.2408026755852843, 0.2508361204013378, 0.2976588628762542, 0.6622073578595318, 0.6053511705685619, 0.26755852842809363, 0.26755852842809363, 0.26421404682274247, 0.26755852842809363, 0.2608695652173913, 0.782608695652174, 0.25418060200668896, 0.2508361204013378, 0.24414715719063546, 0.2408026755852843, 0.8929765886287625, 0.9063545150501672, 0.9063545150501672, 0.919732441471572, 0.9063545150501672, 0.8929765886287625, 0.8762541806020067, 0.2408026755852843, 0.9364548494983278, 0.9364548494983278, 0.9297658862876255, 0.23745819397993312, 0.22742474916387959, 0.23076923076923078, 0.22742474916387959, 0.22742474916387959, 0.22742474916387959, 0.22742474916387959, 0.22742474916387959, 0.22742474916387959, 0.22742474916387959, 0.22742474916387959, 0.23076923076923078, 0.23745819397993312, 0.23411371237458195, 0.23076923076923078, 0.23745819397993312, 0.23411371237458195, 0.23411371237458195, 0.23411371237458195, 0.23411371237458195, 0.23076923076923078, 0.23076923076923078, 0.23076923076923078, 0.23076923076923078, 0.2508361204013378, 0.25752508361204013, 0.2608695652173913, 0.24414715719063546, 0.24749163879598662, 0.2909698996655518, 0.2909698996655518, 0.43478260869565216, 0.4414715719063545, 0.34448160535117056, 0.28762541806020064, 0.2976588628762542, 0.4180602006688963, 0.35451505016722407, 0.9297658862876255, 0.939799331103679, 0.9364548494983278, 0.9264214046822743, 0.411371237458194, 0.39464882943143814, 0.3879598662207358, 0.38127090301003347, 0.3411371237458194, 0.3076923076923077, 0.31438127090301005, 0.903010033444816, 0.3110367892976589, 0.2709030100334448, 0.25418060200668896, 0.26421404682274247, 0.25418060200668896, 0.2508361204013378, 0.2408026755852843, 0.24749163879598662, 0.24749163879598662, 0.25418060200668896, 0.939799331103679, 0.3110367892976589, 0.3076923076923077, 0.26421404682274247, 0.24749163879598662, 0.23411371237458195, 0.23411371237458195, 0.2408026755852843, 0.2508361204013378, 0.2508361204013378, 0.25418060200668896, 0.2508361204013378, 0.25752508361204013, 0.28762541806020064, 0.29431438127090304, 0.25418060200668896, 0.8193979933110368, 0.2408026755852843, 0.23076923076923078, 0.23076923076923078, 0.23076923076923078, 0.23076923076923078, 0.23076923076923078, 0.23076923076923078, 0.23076923076923078, 0.23076923076923078, 0.23076923076923078, 0.23076923076923078, 0.23411371237458195, 0.23076923076923078, 0.22742474916387959, 0.23076923076923078, 0.22742474916387959, 0.22742474916387959, 0.23076923076923078, 0.23411371237458195, 0.23411371237458195, 0.23411371237458195, 0.23411371237458195, 0.23411371237458195, 0.23745819397993312, 0.23745819397993312, 0.23745819397993312, 0.23745819397993312, 0.2408026755852843, 0.24414715719063546, 0.2408026755852843, 0.2408026755852843, 0.23745819397993312, 0.23745819397993312, 0.23745819397993312, 0.23745819397993312, 0.23745819397993312, 0.23411371237458195, 0.23411371237458195, 0.23076923076923078, 0.23076923076923078, 0.23076923076923078, 0.23745819397993312, 0.23745819397993312, 0.23745819397993312, 0.23745819397993312, 0.23745819397993312, 0.23076923076923078, 0.23076923076923078, 0.23745819397993312, 0.23745819397993312, 0.2408026755852843, 0.23745819397993312, 0.23745819397993312, 0.23745819397993312, 0.23745819397993312, 0.23745819397993312, 0.23745819397993312, 0.2408026755852843, 0.2408026755852843, 0.9331103678929766, 0.9331103678929766, 0.9331103678929766, 0.23745819397993312, 0.23745819397993312, 0.7993311036789298, 0.8461538461538461, 0.8461538461538461, 0.8461538461538461, 0.7792642140468228, 0.23745819397993312, 0.23745819397993312, 0.9498327759197325, 0.9498327759197325, 0.23411371237458195, 0.23411371237458195, 0.23411371237458195, 0.23411371237458195, 0.9297658862876255, 0.9498327759197325, 0.939799331103679, 0.9297658862876255, 0.23745819397993312, 0.9498327759197325, 0.27424749163879597, 0.25752508361204013, 0.8394648829431438, 0.9464882943143813, 0.8260869565217391, 0.23411371237458195, 0.8996655518394648, 0.9464882943143813, 0.9464882943143813, 0.9297658862876255, 0.8862876254180602, 0.23411371237458195, 0.23411371237458195, 0.23745819397993312, 0.23745819397993312, 0.23411371237458195, 0.23411371237458195, 0.23411371237458195, 0.23411371237458195, 0.23745819397993312, 0.23745819397993312, 0.23745819397993312, 0.23745819397993312, 0.23745819397993312, 0.2408026755852843, 0.2408026755852843, 0.2408026755852843, 0.24749163879598662, 0.24749163879598662, 0.24749163879598662, 0.24749163879598662, 0.2508361204013378, 0.2508361204013378, 0.2508361204013378, 0.25418060200668896, 0.25752508361204013, 0.2608695652173913, 0.26421404682274247, 0.26755852842809363, 0.2709030100334448, 0.27424749163879597, 0.2809364548494983, 0.29431438127090304, 0.3277591973244147, 0.35785953177257523, 0.38127090301003347, 0.411371237458194, 0.4414715719063545, 0.5284280936454849, 0.7123745819397993, 0.7993311036789298, 0.8160535117056856, 0.8662207357859532], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Cas_Cas1.gap.json b/pfam_gap_rates/Cas_Cas1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c314fbef12256b55a01119004df3f0e95b499c5e
--- /dev/null
+++ b/pfam_gap_rates/Cas_Cas1.gap.json
@@ -0,0 +1 @@
+{"family": "Cas_Cas1", "n_seqs": 1143, "length": 311, "gap_rates": [0.5704286964129484, 0.46281714785651795, 0.3867016622922135, 0.3648293963254593, 0.3438320209973753, 0.289588801399825, 0.23709536307961504, 0.2178477690288714, 0.3359580052493438, 0.18635170603674542, 0.18197725284339458, 0.18110236220472442, 0.18110236220472442, 0.18110236220472442, 0.18022747156605423, 0.17935258092738407, 0.17760279965004375, 0.17497812773403323, 0.17497812773403323, 0.1732283464566929, 0.1732283464566929, 0.9405074365704287, 0.9221347331583553, 0.17060367454068243, 0.19510061242344706, 0.18635170603674542, 0.9291338582677166, 0.9457567804024497, 0.9352580927384077, 0.9168853893263342, 0.4015748031496063, 0.17672790901137359, 0.1662292213473316, 0.1662292213473316, 0.16535433070866143, 0.16535433070866143, 0.16535433070866143, 0.16535433070866143, 0.16360454943132108, 0.16272965879265092, 0.16272965879265092, 0.16185476815398075, 0.1609798775153106, 0.1609798775153106, 0.1609798775153106, 0.1609798775153106, 0.16010498687664043, 0.16010498687664043, 0.8171478565179353, 0.1609798775153106, 0.16010498687664043, 0.1609798775153106, 0.16010498687664043, 0.16010498687664043, 0.16010498687664043, 0.16010498687664043, 0.15923009623797024, 0.15923009623797024, 0.15835520559930008, 0.15835520559930008, 0.15748031496062992, 0.15748031496062992, 0.15748031496062992, 0.15748031496062992, 0.15748031496062992, 0.15748031496062992, 0.15660542432195976, 0.1557305336832896, 0.15660542432195976, 0.15748031496062992, 0.15748031496062992, 0.1609798775153106, 0.15835520559930008, 0.16185476815398075, 0.15835520559930008, 0.15748031496062992, 0.15835520559930008, 0.15748031496062992, 0.15748031496062992, 0.15748031496062992, 0.15660542432195976, 0.15748031496062992, 0.8565179352580927, 0.6465441819772528, 0.17935258092738407, 0.16272965879265092, 0.1609798775153106, 0.1609798775153106, 0.16185476815398075, 0.16272965879265092, 0.16447944006999124, 0.16272965879265092, 0.16272965879265092, 0.1609798775153106, 0.16360454943132108, 0.16185476815398075, 0.16272965879265092, 0.16535433070866143, 0.1662292213473316, 0.19772528433945757, 0.21959755030621173, 0.2073490813648294, 0.21084864391951005, 0.2274715660542432, 0.31583552055993, 0.2283464566929134, 0.17410323709536307, 0.1679790026246719, 0.16535433070866143, 0.16535433070866143, 0.1662292213473316, 0.1662292213473316, 0.16535433070866143, 0.1679790026246719, 0.1714785651793526, 0.2152230971128609, 0.22572178477690288, 0.23534558180227472, 0.24146981627296588, 0.2440944881889764, 0.24934383202099739, 0.24934383202099739, 0.24934383202099739, 0.24934383202099739, 0.2484689413823272, 0.25021872265966755, 0.2510936132983377, 0.25284339457567806, 0.2554680664916885, 0.25984251968503935, 0.26334208223972005, 0.2650918635170604, 0.615923009623797, 0.6229221347331584, 0.7830271216097988, 0.9483814523184602, 0.8101487314085739, 0.7305336832895888, 0.6115485564304461, 0.4251968503937008, 0.4006999125109361, 0.3762029746281715, 0.3429571303587052, 0.3132108486439195, 0.2983377077865267, 0.2852143482064742, 0.27121609798775154, 0.27209098862642167, 0.279090113735783, 0.2799650043744532, 0.3009623797025372, 0.3902012248468941, 0.38232720909886264, 0.36920384951881013, 0.32983377077865267, 0.30446194225721784, 0.28608923884514437, 0.2764654418197725, 0.27034120734908135, 0.9387576552930884, 0.9483814523184602, 0.9221347331583553, 0.2388451443569554, 0.1968503937007874, 0.1968503937007874, 0.18722659667541558, 0.1968503937007874, 0.19772528433945757, 0.17497812773403323, 0.15310586176727908, 0.1426071741032371, 0.1399825021872266, 0.1399825021872266, 0.1399825021872266, 0.1399825021872266, 0.1399825021872266, 0.1399825021872266, 0.1399825021872266, 0.1399825021872266, 0.1399825021872266, 0.1399825021872266, 0.14435695538057744, 0.15398075240594924, 0.19597550306211722, 0.22572178477690288, 0.2274715660542432, 0.20559930008748906, 0.39545056867891515, 0.7769028871391076, 0.94750656167979, 0.8057742782152231, 0.7620297462817148, 0.36920384951881013, 0.8582677165354331, 0.2274715660542432, 0.2230971128608924, 0.22484689413823272, 0.1968503937007874, 0.20297462817147857, 0.1942257217847769, 0.18197725284339458, 0.17497812773403323, 0.15660542432195976, 0.15923009623797024, 0.16447944006999124, 0.23097112860892388, 0.9387576552930884, 0.9440069991251093, 0.9431321084864392, 0.9195100612423447, 0.19772528433945757, 0.17585301837270342, 0.15923009623797024, 0.14348206474190725, 0.13823272090988625, 0.1373578302712161, 0.13560804899387577, 0.13560804899387577, 0.13560804899387577, 0.13560804899387577, 0.13385826771653545, 0.1347331583552056, 0.1347331583552056, 0.13385826771653545, 0.13298337707786526, 0.13298337707786526, 0.13298337707786526, 0.13298337707786526, 0.13123359580052493, 0.1321084864391951, 0.13123359580052493, 0.13123359580052493, 0.13123359580052493, 0.13123359580052493, 0.1294838145231846, 0.12860892388451445, 0.12773403324584426, 0.12860892388451445, 0.12860892388451445, 0.12860892388451445, 0.12860892388451445, 0.12773403324584426, 0.12773403324584426, 0.12773403324584426, 0.12773403324584426, 0.1294838145231846, 0.20647419072615922, 0.17497812773403323, 0.14698162729658792, 0.14785651793525809, 0.18547681539807523, 0.17935258092738407, 0.13035870516185477, 0.12860892388451445, 0.12773403324584426, 0.12773403324584426, 0.1268591426071741, 0.1268591426071741, 0.1268591426071741, 0.1268591426071741, 0.12773403324584426, 0.12773403324584426, 0.12860892388451445, 0.12860892388451445, 0.12860892388451445, 0.37182852143482065, 0.13385826771653545, 0.1347331583552056, 0.13910761154855644, 0.1426071741032371, 0.14698162729658792, 0.1504811898512686, 0.16272965879265092, 0.17935258092738407, 0.20297462817147857, 0.2222222222222222, 0.25021872265966755, 0.27296587926509186, 0.310586176727909, 0.3438320209973753, 0.35345581802274717, 0.3648293963254593, 0.40857392825896766, 0.39282589676290464, 0.39720034995625547, 0.4015748031496063, 0.40244969378827644, 0.40857392825896766, 0.41294838145231844, 0.42694663167104113, 0.4356955380577428, 0.94750656167979, 0.7270341207349081, 0.4426946631671041, 0.4444444444444444, 0.44181977252843396, 0.44181977252843396, 0.4444444444444444, 0.4461942257217848, 0.44881889763779526, 0.45144356955380577, 0.45231846019247596, 0.4531933508311461, 0.4566929133858268, 0.4584426946631671, 0.4645669291338583, 0.4671916010498688, 0.48031496062992124, 0.49343832020997375, 0.531058617672791, 0.7725284339457568], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Cas_Cas4.gap.json b/pfam_gap_rates/Cas_Cas4.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..5f5d9be548437a8eaa9365fa4ec4fc3a48bcc5d8
--- /dev/null
+++ b/pfam_gap_rates/Cas_Cas4.gap.json
@@ -0,0 +1 @@
+{"family": "Cas_Cas4", "n_seqs": 802, "length": 226, "gap_rates": [0.8241895261845387, 0.47880299251870323, 0.33541147132169574, 0.27680798004987534, 0.2630922693266833, 0.2593516209476309, 0.25561097256857856, 0.25561097256857856, 0.25311720698254364, 0.24937655860349128, 0.24937655860349128, 0.24937655860349128, 0.24937655860349128, 0.24937655860349128, 0.2506234413965087, 0.24937655860349128, 0.24812967581047382, 0.24812967581047382, 0.24812967581047382, 0.24937655860349128, 0.9451371571072319, 0.24688279301745636, 0.24812967581047382, 0.24438902743142144, 0.23940149625935161, 0.23815461346633415, 0.23690773067331672, 0.23690773067331672, 0.29052369077306733, 0.2518703241895262, 0.23067331670822944, 0.23067331670822944, 0.2281795511221945, 0.5785536159600998, 0.22693266832917705, 0.22443890274314215, 0.22443890274314215, 0.22194513715710723, 0.22069825436408977, 0.2194513715710723, 0.6508728179551122, 0.6658354114713217, 0.7456359102244389, 0.9014962593516209, 0.9364089775561097, 0.940149625935162, 0.9152119700748129, 0.8778054862842892, 0.6845386533665836, 0.6571072319201995, 0.6496259351620948, 0.22069825436408977, 0.3316708229426434, 0.33790523690773067, 0.3628428927680798, 0.37032418952618457, 0.8840399002493765, 0.38902743142144636, 0.24937655860349128, 0.5486284289276808, 0.6546134663341646, 0.800498753117207, 0.8927680798004988, 0.9189526184538653, 0.8192019950124688, 0.7556109725685786, 0.5798004987531172, 0.48129675810473815, 0.2169576059850374, 0.22443890274314215, 0.2281795511221945, 0.2281795511221945, 0.23316708229426433, 0.6658354114713217, 0.4551122194513716, 0.18952618453865336, 0.48877805486284287, 0.5074812967581047, 0.8403990024937655, 0.8790523690773068, 0.9239401496259352, 0.942643391521197, 0.9064837905236908, 0.871571072319202, 0.8054862842892768, 0.49625935162094764, 0.4800498753117207, 0.15087281795511223, 0.14214463840399003, 0.13840399002493767, 0.13840399002493767, 0.13591022443890274, 0.13591022443890274, 0.13092269326683292, 0.13092269326683292, 0.7980049875311721, 0.9339152119700748, 0.9177057356608479, 0.6882793017456359, 0.341645885286783, 0.3092269326683292, 0.23690773067331672, 0.16084788029925187, 0.07107231920199501, 0.06982543640897755, 0.07605985037406483, 0.0399002493765586, 0.7967581047381546, 0.8154613466334164, 0.8266832917705735, 0.8329177057356608, 0.8354114713216958, 0.9114713216957606, 0.9364089775561097, 0.8379052369077307, 0.8341645885286783, 0.8266832917705735, 0.8254364089775561, 0.8079800498753117, 0.7967581047381546, 0.03865336658354115, 0.03865336658354115, 0.03865336658354115, 0.03865336658354115, 0.03865336658354115, 0.03865336658354115, 0.03865336658354115, 0.03865336658354115, 0.05112219451371571, 0.8453865336658354, 0.899002493765586, 0.9476309226932669, 0.9314214463840399, 0.8615960099750624, 0.8229426433915212, 0.03865336658354115, 0.03865336658354115, 0.034912718204488775, 0.03117206982543641, 0.5910224438902744, 0.02743142144638404, 0.02493765586034913, 0.02493765586034913, 0.02493765586034913, 0.02493765586034913, 0.02369077306733167, 0.022443890274314215, 0.0199501246882793, 0.017456359102244388, 0.018703241895261846, 0.018703241895261846, 0.018703241895261846, 0.3802992518703242, 0.022443890274314215, 0.0199501246882793, 0.02119700748129676, 0.02119700748129676, 0.016209476309226933, 0.011221945137157107, 0.012468827930174564, 0.19825436408977556, 0.0199501246882793, 0.014962593516209476, 0.014962593516209476, 0.018703241895261846, 0.0199501246882793, 0.01371571072319202, 0.02119700748129676, 0.034912718204488775, 0.03740648379052369, 0.02743142144638404, 0.016209476309226933, 0.014962593516209476, 0.014962593516209476, 0.9451371571072319, 0.9488778054862843, 0.9376558603491272, 0.017456359102244388, 0.0199501246882793, 0.029925187032418952, 0.03865336658354115, 0.04239401496259352, 0.04239401496259352, 0.0399002493765586, 0.03740648379052369, 0.03740648379052369, 0.03865336658354115, 0.0399002493765586, 0.04114713216957606, 0.03865336658354115, 0.03865336658354115, 0.0399002493765586, 0.03865336658354115, 0.04239401496259352, 0.04239401496259352, 0.04239401496259352, 0.04488778054862843, 0.04239401496259352, 0.043640897755610975, 0.046134663341645885, 0.05236907730673317, 0.08478802992518704, 0.9351620947630923, 0.8042394014962594, 0.05236907730673317, 0.046134663341645885, 0.04738154613466334, 0.05112219451371571, 0.04738154613466334, 0.04738154613466334, 0.04738154613466334, 0.048628428927680795, 0.05361596009975062, 0.05112219451371571, 0.04987531172069826, 0.048628428927680795, 0.05112219451371571, 0.05112219451371571, 0.05361596009975062, 0.05486284289276808, 0.05610972568578554, 0.057356608478802994, 0.059850374064837904, 0.059850374064837904, 0.1882793017456359, 0.5286783042394015], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Cas_Cas7.gap.json b/pfam_gap_rates/Cas_Cas7.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..33ad889b926e11ff87a2d4b720ab887d5240679a
--- /dev/null
+++ b/pfam_gap_rates/Cas_Cas7.gap.json
@@ -0,0 +1 @@
+{"family": "Cas_Cas7", "n_seqs": 392, "length": 352, "gap_rates": [0.23979591836734693, 0.08163265306122448, 0.058673469387755105, 0.04846938775510204, 0.04846938775510204, 0.04846938775510204, 0.04846938775510204, 0.04846938775510204, 0.04591836734693878, 0.04591836734693878, 0.04591836734693878, 0.04591836734693878, 0.04081632653061224, 0.04081632653061224, 0.04081632653061224, 0.04081632653061224, 0.04081632653061224, 0.04081632653061224, 0.04081632653061224, 0.13520408163265307, 0.03826530612244898, 0.03826530612244898, 0.15306122448979592, 0.03571428571428571, 0.03571428571428571, 0.03571428571428571, 0.03571428571428571, 0.03571428571428571, 0.20408163265306123, 0.20153061224489796, 0.03571428571428571, 0.03571428571428571, 0.03571428571428571, 0.03571428571428571, 0.03571428571428571, 0.03571428571428571, 0.03316326530612245, 0.03316326530612245, 0.03316326530612245, 0.03316326530612245, 0.03316326530612245, 0.03316326530612245, 0.030612244897959183, 0.030612244897959183, 0.030612244897959183, 0.030612244897959183, 0.030612244897959183, 0.030612244897959183, 0.030612244897959183, 0.03316326530612245, 0.03316326530612245, 0.03316326530612245, 0.03316326530612245, 0.03316326530612245, 0.34438775510204084, 0.5051020408163265, 0.5382653061224489, 0.8826530612244898, 0.9081632653061225, 0.9336734693877551, 0.8852040816326531, 0.5382653061224489, 0.5280612244897959, 0.04081632653061224, 0.03316326530612245, 0.030612244897959183, 0.030612244897959183, 0.030612244897959183, 0.03316326530612245, 0.030612244897959183, 0.030612244897959183, 0.030612244897959183, 0.030612244897959183, 0.6377551020408163, 0.6709183673469388, 0.8494897959183674, 0.9107142857142857, 0.9209183673469388, 0.9438775510204082, 0.9158163265306123, 0.8801020408163265, 0.8443877551020408, 0.6632653061224489, 0.6147959183673469, 0.05357142857142857, 0.125, 0.11734693877551021, 0.11734693877551021, 0.1096938775510204, 0.10204081632653061, 0.10459183673469388, 0.10204081632653061, 0.04336734693877551, 0.22193877551020408, 0.2653061224489796, 0.34438775510204084, 0.4030612244897959, 0.5153061224489796, 0.6811224489795918, 0.798469387755102, 0.8724489795918368, 0.9209183673469388, 0.9464285714285714, 0.9362244897959183, 0.9005102040816326, 0.8596938775510204, 0.7219387755102041, 0.6071428571428571, 0.4362244897959184, 0.3852040816326531, 0.3086734693877551, 0.22959183673469388, 0.1989795918367347, 0.10714285714285714, 0.5382653061224489, 0.8086734693877551, 0.9285714285714286, 0.6913265306122449, 0.4260204081632653, 0.1377551020408163, 0.18112244897959184, 0.14030612244897958, 0.14285714285714285, 0.13010204081632654, 0.8954081632653061, 0.9285714285714286, 0.8647959183673469, 0.07397959183673469, 0.9183673469387755, 0.9362244897959183, 0.9489795918367347, 0.9209183673469388, 0.9056122448979592, 0.05612244897959184, 0.05102040816326531, 0.04591836734693878, 0.04846938775510204, 0.04336734693877551, 0.04081632653061224, 0.04336734693877551, 0.04081632653061224, 0.02806122448979592, 0.9132653061224489, 0.9132653061224489, 0.02806122448979592, 0.02806122448979592, 0.02806122448979592, 0.02806122448979592, 0.02806122448979592, 0.02806122448979592, 0.02806122448979592, 0.02806122448979592, 0.02806122448979592, 0.02806122448979592, 0.02806122448979592, 0.04591836734693878, 0.9132653061224489, 0.04081632653061224, 0.125, 0.030612244897959183, 0.5076530612244898, 0.6403061224489796, 0.8010204081632653, 0.8724489795918368, 0.9183673469387755, 0.9413265306122449, 0.9336734693877551, 0.9107142857142857, 0.8214285714285714, 0.7117346938775511, 0.6045918367346939, 0.18877551020408162, 0.03316326530612245, 0.2372448979591837, 0.03316326530612245, 0.03316326530612245, 0.7882653061224489, 0.03316326530612245, 0.03316326530612245, 0.03316326530612245, 0.03316326530612245, 0.03316326530612245, 0.03316326530612245, 0.03316326530612245, 0.03316326530612245, 0.03316326530612245, 0.03316326530612245, 0.03316326530612245, 0.030612244897959183, 0.030612244897959183, 0.030612244897959183, 0.798469387755102, 0.03571428571428571, 0.03571428571428571, 0.03571428571428571, 0.03571428571428571, 0.03571428571428571, 0.030612244897959183, 0.03826530612244898, 0.030612244897959183, 0.030612244897959183, 0.030612244897959183, 0.02806122448979592, 0.02806122448979592, 0.030612244897959183, 0.04081632653061224, 0.04591836734693878, 0.49489795918367346, 0.9005102040816326, 0.9464285714285714, 0.8826530612244898, 0.2755102040816326, 0.30612244897959184, 0.3469387755102041, 0.38010204081632654, 0.2066326530612245, 0.7551020408163265, 0.8903061224489796, 0.9132653061224489, 0.9260204081632653, 0.9387755102040817, 0.9336734693877551, 0.9209183673469388, 0.9005102040816326, 0.7780612244897959, 0.7321428571428571, 0.04336734693877551, 0.03316326530612245, 0.03316326530612245, 0.02806122448979592, 0.025510204081632654, 0.025510204081632654, 0.025510204081632654, 0.025510204081632654, 0.025510204081632654, 0.025510204081632654, 0.02806122448979592, 0.025510204081632654, 0.025510204081632654, 0.025510204081632654, 0.025510204081632654, 0.025510204081632654, 0.025510204081632654, 0.02295918367346939, 0.02295918367346939, 0.02295918367346939, 0.02295918367346939, 0.025510204081632654, 0.025510204081632654, 0.025510204081632654, 0.025510204081632654, 0.025510204081632654, 0.025510204081632654, 0.8545918367346939, 0.8928571428571429, 0.8954081632653061, 0.8979591836734694, 0.8954081632653061, 0.8673469387755102, 0.8545918367346939, 0.025510204081632654, 0.03316326530612245, 0.8214285714285714, 0.030612244897959183, 0.030612244897959183, 0.03316326530612245, 0.03316326530612245, 0.03316326530612245, 0.03316326530612245, 0.03571428571428571, 0.03316326530612245, 0.03316326530612245, 0.03316326530612245, 0.03316326530612245, 0.03316326530612245, 0.03316326530612245, 0.03316326530612245, 0.03316326530612245, 0.03316326530612245, 0.03316326530612245, 0.03316326530612245, 0.03316326530612245, 0.03316326530612245, 0.03316326530612245, 0.03316326530612245, 0.03316326530612245, 0.03316326530612245, 0.03316326530612245, 0.03316326530612245, 0.03316326530612245, 0.7882653061224489, 0.7882653061224489, 0.05102040816326531, 0.03316326530612245, 0.03316326530612245, 0.03316326530612245, 0.03316326530612245, 0.03316326530612245, 0.03316326530612245, 0.03316326530612245, 0.03316326530612245, 0.03316326530612245, 0.03316326530612245, 0.03316326530612245, 0.03316326530612245, 0.2755102040816326, 0.2627551020408163, 0.23469387755102042, 0.20153061224489796, 0.14540816326530612, 0.10459183673469388, 0.08928571428571429, 0.07397959183673469, 0.0663265306122449, 0.061224489795918366, 0.061224489795918366, 0.05612244897959184, 0.05612244897959184, 0.058673469387755105, 0.06377551020408163, 0.8367346938775511, 0.8367346938775511, 0.8341836734693877, 0.06377551020408163, 0.06887755102040816, 0.07397959183673469, 0.07653061224489796, 0.07653061224489796, 0.8596938775510204, 0.08673469387755102, 0.8724489795918368, 0.9387755102040817, 0.9438775510204082, 0.9311224489795918, 0.8367346938775511, 0.32142857142857145, 0.2857142857142857, 0.1913265306122449, 0.1836734693877551, 0.1913265306122449, 0.20153061224489796, 0.20408163265306123, 0.20408163265306123, 0.20408163265306123, 0.20408163265306123, 0.2066326530612245, 0.21173469387755103, 0.21683673469387754, 0.23469387755102042, 0.2627551020408163, 0.34438775510204084, 0.6938775510204082], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Catalase.gap.json b/pfam_gap_rates/Catalase.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ebd2b05f2a6d9145a61b5dfb5b7f4ceb5b9180ad
--- /dev/null
+++ b/pfam_gap_rates/Catalase.gap.json
@@ -0,0 +1 @@
+{"family": "Catalase", "n_seqs": 2075, "length": 401, "gap_rates": [0.2906024096385542, 0.24385542168674698, 0.22602409638554216, 0.22072289156626507, 0.21590361445783132, 0.21445783132530122, 0.21204819277108433, 0.21108433734939758, 0.22843373493975905, 0.2125301204819277, 0.20289156626506025, 0.2, 0.2, 0.1980722891566265, 0.19710843373493975, 0.19518072289156627, 0.1946987951807229, 0.1942168674698795, 0.21204819277108433, 0.20963855421686747, 0.9440963855421687, 0.9465060240963855, 0.9421686746987952, 0.19614457831325302, 0.19373493975903613, 0.19180722891566265, 0.18746987951807229, 0.1821686746987952, 0.1816867469879518, 0.17927710843373493, 0.17879518072289158, 0.17734939759036145, 0.17542168674698796, 0.17397590361445783, 0.1725301204819277, 0.17204819277108432, 0.17012048192771084, 0.1686746987951807, 0.16771084337349398, 0.1672289156626506, 0.16674698795180723, 0.16626506024096385, 0.16481927710843375, 0.16, 0.1580722891566265, 0.15566265060240964, 0.14698795180722893, 0.09349397590361445, 0.09060240963855422, 0.08626506024096385, 0.08530120481927711, 0.08481927710843373, 0.08385542168674699, 0.08240963855421687, 0.0819277108433735, 0.08096385542168674, 0.08096385542168674, 0.08096385542168674, 0.08048192771084338, 0.08048192771084338, 0.08048192771084338, 0.08, 0.08144578313253012, 0.08144578313253012, 0.08289156626506024, 0.0819277108433735, 0.9436144578313252, 0.9489156626506025, 0.9489156626506025, 0.9489156626506025, 0.912289156626506, 0.0819277108433735, 0.0819277108433735, 0.08144578313253012, 0.08096385542168674, 0.08096385542168674, 0.08144578313253012, 0.08096385542168674, 0.08048192771084338, 0.08048192771084338, 0.08, 0.08, 0.09879518072289156, 0.2978313253012048, 0.12819277108433735, 0.08578313253012049, 0.08240963855421687, 0.08048192771084338, 0.07951807228915662, 0.08, 0.07951807228915662, 0.0780722891566265, 0.0780722891566265, 0.0780722891566265, 0.0780722891566265, 0.07855421686746988, 0.08240963855421687, 0.07759036144578313, 0.0780722891566265, 0.0819277108433735, 0.08289156626506024, 0.08530120481927711, 0.08240963855421687, 0.08, 0.0780722891566265, 0.0780722891566265, 0.0780722891566265, 0.07855421686746988, 0.08, 0.07951807228915662, 0.07951807228915662, 0.07855421686746988, 0.0780722891566265, 0.0780722891566265, 0.07759036144578313, 0.07759036144578313, 0.07759036144578313, 0.07855421686746988, 0.07855421686746988, 0.07855421686746988, 0.07710843373493977, 0.0780722891566265, 0.07855421686746988, 0.07903614457831325, 0.07951807228915662, 0.07951807228915662, 0.08144578313253012, 0.08433734939759036, 0.08530120481927711, 0.08626506024096385, 0.08530120481927711, 0.08433734939759036, 0.08337349397590361, 0.08289156626506024, 0.08433734939759036, 0.0819277108433735, 0.0819277108433735, 0.08289156626506024, 0.0819277108433735, 0.0819277108433735, 0.0819277108433735, 0.0819277108433735, 0.08337349397590361, 0.08433734939759036, 0.08433734939759036, 0.08674698795180723, 0.08578313253012049, 0.08819277108433735, 0.08819277108433735, 0.08819277108433735, 0.08867469879518072, 0.09156626506024096, 0.0963855421686747, 0.09542168674698795, 0.10120481927710843, 0.10554216867469879, 0.11180722891566265, 0.10313253012048193, 0.7508433734939759, 0.8708433734939759, 0.8510843373493976, 0.743132530120482, 0.10409638554216867, 0.23132530120481928, 0.22506024096385543, 0.0963855421686747, 0.7893975903614457, 0.7889156626506024, 0.09590361445783133, 0.09397590361445783, 0.09301204819277109, 0.0910843373493976, 0.09253012048192771, 0.09301204819277109, 0.09204819277108434, 0.09253012048192771, 0.09204819277108434, 0.09156626506024096, 0.09397590361445783, 0.09542168674698795, 0.0983132530120482, 0.10313253012048193, 0.10602409638554217, 0.10313253012048193, 0.09783132530120482, 0.0963855421686747, 0.09590361445783133, 0.09542168674698795, 0.09686746987951807, 0.09590361445783133, 0.09590361445783133, 0.09542168674698795, 0.09301204819277109, 0.09156626506024096, 0.0910843373493976, 0.09060240963855422, 0.09060240963855422, 0.09060240963855422, 0.08674698795180723, 0.08626506024096385, 0.08626506024096385, 0.08674698795180723, 0.08674698795180723, 0.08626506024096385, 0.0872289156626506, 0.0872289156626506, 0.08771084337349398, 0.08771084337349398, 0.08771084337349398, 0.08674698795180723, 0.08674698795180723, 0.0872289156626506, 0.08530120481927711, 0.08626506024096385, 0.08578313253012049, 0.08674698795180723, 0.08674698795180723, 0.0872289156626506, 0.08530120481927711, 0.08481927710843373, 0.08433734939759036, 0.08481927710843373, 0.08433734939759036, 0.08337349397590361, 0.08385542168674699, 0.08530120481927711, 0.08626506024096385, 0.08771084337349398, 0.08867469879518072, 0.09012048192771084, 0.09060240963855422, 0.0910843373493976, 0.09397590361445783, 0.09445783132530121, 0.09783132530120482, 0.10024096385542168, 0.10120481927710843, 0.13253012048192772, 0.13204819277108434, 0.13301204819277107, 0.1180722891566265, 0.11662650602409638, 0.10409638554216867, 0.09397590361445783, 0.08819277108433735, 0.0872289156626506, 0.08530120481927711, 0.08530120481927711, 0.08530120481927711, 0.08530120481927711, 0.08578313253012049, 0.08674698795180723, 0.08626506024096385, 0.08626506024096385, 0.0872289156626506, 0.08819277108433735, 0.0872289156626506, 0.0891566265060241, 0.09734939759036144, 0.09590361445783133, 0.11228915662650603, 0.10361445783132531, 0.09253012048192771, 0.09060240963855422, 0.0910843373493976, 0.0910843373493976, 0.09204819277108434, 0.09060240963855422, 0.09156626506024096, 0.08867469879518072, 0.08578313253012049, 0.08530120481927711, 0.08530120481927711, 0.08578313253012049, 0.08626506024096385, 0.09542168674698795, 0.1180722891566265, 0.12963855421686746, 0.14650602409638555, 0.1508433734939759, 0.14843373493975903, 0.13783132530120482, 0.11469879518072289, 0.10120481927710843, 0.0872289156626506, 0.08481927710843373, 0.08530120481927711, 0.08674698795180723, 0.08674698795180723, 0.08674698795180723, 0.08674698795180723, 0.08771084337349398, 0.11903614457831325, 0.1108433734939759, 0.10120481927710843, 0.0963855421686747, 0.09060240963855422, 0.09349397590361445, 0.08626506024096385, 0.08578313253012049, 0.08578313253012049, 0.08530120481927711, 0.08578313253012049, 0.08674698795180723, 0.08771084337349398, 0.08867469879518072, 0.0891566265060241, 0.08963855421686746, 0.0891566265060241, 0.09060240963855422, 0.09590361445783133, 0.10361445783132531, 0.10265060240963855, 0.09783132530120482, 0.09493975903614457, 0.09397590361445783, 0.09253012048192771, 0.09349397590361445, 0.09349397590361445, 0.09253012048192771, 0.09156626506024096, 0.09156626506024096, 0.0910843373493976, 0.09253012048192771, 0.09301204819277109, 0.09445783132530121, 0.09445783132530121, 0.09445783132530121, 0.09397590361445783, 0.09445783132530121, 0.09301204819277109, 0.09301204819277109, 0.09493975903614457, 0.09397590361445783, 0.09397590361445783, 0.09349397590361445, 0.09253012048192771, 0.09301204819277109, 0.09301204819277109, 0.09349397590361445, 0.09397590361445783, 0.09349397590361445, 0.09349397590361445, 0.09397590361445783, 0.09349397590361445, 0.09686746987951807, 0.10987951807228916, 0.11373493975903615, 0.11855421686746988, 0.11951807228915663, 0.12096385542168675, 0.12192771084337349, 0.13204819277108434, 0.8125301204819277, 0.14457831325301204, 0.15566265060240964, 0.15855421686746987, 0.16048192771084338, 0.16192771084337348, 0.16337349397590362, 0.163855421686747, 0.16337349397590362, 0.16433734939759037, 0.16433734939759037, 0.16433734939759037, 0.16433734939759037, 0.7946987951807228, 0.9253012048192771, 0.18120481927710844, 0.16771084337349398, 0.17686746987951807, 0.17397590361445783, 0.1763855421686747, 0.17397590361445783, 0.1744578313253012, 0.17783132530120482, 0.1744578313253012, 0.17542168674698796, 0.17590361445783131, 0.17590361445783131, 0.17734939759036145, 0.1783132530120482, 0.1980722891566265, 0.2925301204819277, 0.22216867469879517, 0.1893975903614458, 0.19132530120481928, 0.19228915662650603, 0.9387951807228916, 0.931566265060241, 0.19951807228915663, 0.4693975903614458, 0.1927710843373494, 0.19036144578313252, 0.1908433734939759, 0.19228915662650603, 0.1942168674698795, 0.2019277108433735, 0.2568674698795181, 0.32385542168674697, 0.5946987951807229], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Cation_ATPase.gap.json b/pfam_gap_rates/Cation_ATPase.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..06f9f4b5ebf4f41c07dafa2942a1d3c9f377cb7b
--- /dev/null
+++ b/pfam_gap_rates/Cation_ATPase.gap.json
@@ -0,0 +1 @@
+{"family": "Cation_ATPase", "n_seqs": 3990, "length": 138, "gap_rates": [0.8115288220551379, 0.568671679197995, 0.5052631578947369, 0.48621553884711777, 0.47769423558897245, 0.4699248120300752, 0.46441102756892233, 0.4538847117794486, 0.8476190476190476, 0.9446115288220551, 0.8641604010025062, 0.8162907268170426, 0.593734335839599, 0.4548872180451128, 0.37719298245614036, 0.3380952380952381, 0.30275689223057645, 0.2804511278195489, 0.2568922305764411, 0.24185463659147868, 0.22055137844611528, 0.1862155388471178, 0.1343358395989975, 0.09573934837092732, 0.06942355889724311, 0.05162907268170426, 0.04987468671679198, 0.04912280701754386, 0.04837092731829574, 0.0481203007518797, 0.04736842105263158, 0.04736842105263158, 0.04736842105263158, 0.04711779448621554, 0.04661654135338346, 0.04661654135338346, 0.04661654135338346, 0.046365914786967416, 0.045112781954887216, 0.46791979949874685, 0.5125313283208021, 0.5348370927318296, 0.5634085213032581, 0.5817042606516291, 0.5959899749373434, 0.8298245614035088, 0.8601503759398497, 0.9115288220551379, 0.9488721804511279, 0.899749373433584, 0.849624060150376, 0.787719298245614, 0.5932330827067669, 0.5766917293233083, 0.5406015037593985, 0.5258145363408522, 0.5075187969924813, 0.4395989974937343, 0.10927318295739348, 0.10927318295739348, 0.09949874686716792, 0.09674185463659148, 0.09799498746867168, 0.09573934837092732, 0.09473684210526316, 0.09223057644110276, 0.08446115288220551, 0.02431077694235589, 0.8340852130325814, 0.8526315789473684, 0.86265664160401, 0.8756892230576441, 0.8924812030075188, 0.9010025062656641, 0.9240601503759398, 0.8977443609022556, 0.887468671679198, 0.868671679197995, 0.8546365914786967, 0.8428571428571429, 0.8238095238095238, 0.017794486215538845, 0.013533834586466165, 0.006766917293233083, 0.004511278195488722, 0.9493734335839599, 0.0037593984962406013, 0.0030075187969924814, 0.0020050125313283208, 0.0020050125313283208, 0.0020050125313283208, 0.002255639097744361, 0.002255639097744361, 0.0020050125313283208, 0.002506265664160401, 0.002756892230576441, 0.0030075187969924814, 0.003258145363408521, 0.0035087719298245615, 0.003258145363408521, 0.003258145363408521, 0.0037593984962406013, 0.004511278195488722, 0.032330827067669175, 0.506265664160401, 0.7969924812030075, 0.8844611528822055, 0.918546365914787, 0.9328320802005012, 0.9488721804511279, 0.944110275689223, 0.924812030075188, 0.9057644110275689, 0.8586466165413534, 0.7370927318295739, 0.09047619047619047, 0.043358395989974936, 0.010275689223057645, 0.010025062656641603, 0.009523809523809525, 0.008270676691729323, 0.008270676691729323, 0.008521303258145364, 0.008771929824561403, 0.009022556390977444, 0.011027568922305764, 0.011278195488721804, 0.013784461152882205, 0.02731829573934837, 0.031578947368421054, 0.03884711779448621, 0.060651629072681706, 0.11052631578947368, 0.1649122807017544, 0.30952380952380953, 0.42255639097744363, 0.5360902255639097, 0.7832080200501254], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Cation_ATPase_N.gap.json b/pfam_gap_rates/Cation_ATPase_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..28aeabe975f92598659516255c6b62fc8f045abb
--- /dev/null
+++ b/pfam_gap_rates/Cation_ATPase_N.gap.json
@@ -0,0 +1 @@
+{"family": "Cation_ATPase_N", "n_seqs": 5000, "length": 71, "gap_rates": [0.7856, 0.5864, 0.4624, 0.354, 0.2894, 0.2628, 0.25, 0.234, 0.2256, 0.2194, 0.208, 0.192, 0.1754, 0.1734, 0.4284, 0.1428, 0.1212, 0.0914, 0.0646, 0.051, 0.0476, 0.047, 0.043, 0.9318, 0.9234, 0.0316, 0.0266, 0.0198, 0.0122, 0.0082, 0.0074, 0.006, 0.0072, 0.006, 0.0058, 0.0062, 0.0046, 0.004, 0.0034, 0.003, 0.1872, 0.008, 0.0078, 0.0072, 0.0078, 0.008, 0.0048, 0.0054, 0.0056, 0.0062, 0.007, 0.0062, 0.0072, 0.0076, 0.0076, 0.0084, 0.0092, 0.0094, 0.01, 0.0104, 0.0108, 0.0118, 0.0122, 0.0132, 0.016, 0.017, 0.0192, 0.0242, 0.0318, 0.0622, 0.3006], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/CcmB.gap.json b/pfam_gap_rates/CcmB.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..5106f39c0551b59a0bac63383e26ffc2ad5f0f3d
--- /dev/null
+++ b/pfam_gap_rates/CcmB.gap.json
@@ -0,0 +1 @@
+{"family": "CcmB", "n_seqs": 625, "length": 218, "gap_rates": [0.8368, 0.416, 0.1872, 0.1024, 0.0752, 0.0624, 0.0592, 0.0576, 0.056, 0.0544, 0.0528, 0.0496, 0.048, 0.0544, 0.0528, 0.0448, 0.0384, 0.0416, 0.0384, 0.0368, 0.0352, 0.0288, 0.0288, 0.0256, 0.024, 0.024, 0.024, 0.024, 0.0224, 0.024, 0.0224, 0.0224, 0.0256, 0.024, 0.024, 0.024, 0.0272, 0.0496, 0.0464, 0.0368, 0.0416, 0.0432, 0.0336, 0.0384, 0.0336, 0.0272, 0.0288, 0.0272, 0.0224, 0.0176, 0.0176, 0.016, 0.016, 0.016, 0.0144, 0.0144, 0.0144, 0.0144, 0.0144, 0.0144, 0.0144, 0.0176, 0.016, 0.0112, 0.0144, 0.0128, 0.0096, 0.0128, 0.0096, 0.0096, 0.0112, 0.0112, 0.0192, 0.0304, 0.016, 0.016, 0.0144, 0.0176, 0.0192, 0.0112, 0.0192, 0.0144, 0.0176, 0.0256, 0.024, 0.0256, 0.032, 0.0256, 0.032, 0.016, 0.0144, 0.0144, 0.0112, 0.0112, 0.0128, 0.0112, 0.0112, 0.0112, 0.0128, 0.0128, 0.0112, 0.0112, 0.0112, 0.0112, 0.0128, 0.0112, 0.0128, 0.0096, 0.0096, 0.0112, 0.0096, 0.0096, 0.0112, 0.0128, 0.0128, 0.0128, 0.0112, 0.0112, 0.0128, 0.0144, 0.0144, 0.0128, 0.0176, 0.0224, 0.016, 0.0144, 0.016, 0.016, 0.0224, 0.0176, 0.0128, 0.0128, 0.0128, 0.016, 0.0128, 0.0112, 0.0112, 0.0112, 0.0112, 0.0096, 0.0128, 0.0112, 0.0112, 0.0128, 0.0128, 0.0112, 0.0112, 0.0112, 0.0128, 0.0128, 0.0144, 0.0144, 0.0192, 0.016, 0.0128, 0.0112, 0.0112, 0.0112, 0.0128, 0.0112, 0.0112, 0.0112, 0.0112, 0.0112, 0.0112, 0.0112, 0.0096, 0.0096, 0.0096, 0.0096, 0.0096, 0.0096, 0.0096, 0.0096, 0.0112, 0.016, 0.0144, 0.0208, 0.0256, 0.0304, 0.0352, 0.0448, 0.0592, 0.0592, 0.8112, 0.856, 0.6976, 0.0624, 0.0576, 0.0496, 0.0384, 0.0272, 0.024, 0.0256, 0.0256, 0.0256, 0.0256, 0.0288, 0.0304, 0.0336, 0.0384, 0.0464, 0.0528, 0.064, 0.0832, 0.0976, 0.1376, 0.1872, 0.2512, 0.2816, 0.3056, 0.32, 0.336, 0.3472, 0.3552, 0.3552, 0.368, 0.6208], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/CcmE.gap.json b/pfam_gap_rates/CcmE.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..fe19cea293eea4210edc0b1acf4e8a3b9f53ed48
--- /dev/null
+++ b/pfam_gap_rates/CcmE.gap.json
@@ -0,0 +1 @@
+{"family": "CcmE", "n_seqs": 675, "length": 141, "gap_rates": [0.8296296296296296, 0.37037037037037035, 0.2948148148148148, 0.2414814814814815, 0.22518518518518518, 0.20444444444444446, 0.17185185185185184, 0.15259259259259259, 0.12148148148148148, 0.07851851851851852, 0.05925925925925926, 0.054814814814814816, 0.05037037037037037, 0.04888888888888889, 0.045925925925925926, 0.045925925925925926, 0.044444444444444446, 0.045925925925925926, 0.044444444444444446, 0.045925925925925926, 0.045925925925925926, 0.047407407407407405, 0.04, 0.04, 0.04, 0.04, 0.03851851851851852, 0.04, 0.03851851851851852, 0.04, 0.09481481481481481, 0.04, 0.037037037037037035, 0.02666666666666667, 0.01925925925925926, 0.01925925925925926, 0.01925925925925926, 0.017777777777777778, 0.01925925925925926, 0.01925925925925926, 0.03111111111111111, 0.03851851851851852, 0.057777777777777775, 0.8770370370370371, 0.9303703703703704, 0.9377777777777778, 0.92, 0.8696296296296296, 0.11407407407407408, 0.07851851851851852, 0.05925925925925926, 0.7718518518518519, 0.03111111111111111, 0.011851851851851851, 0.011851851851851851, 0.011851851851851851, 0.014814814814814815, 0.013333333333333334, 0.013333333333333334, 0.01037037037037037, 0.01037037037037037, 0.01037037037037037, 0.01037037037037037, 0.01037037037037037, 0.013333333333333334, 0.023703703703703703, 0.022222222222222223, 0.9451851851851852, 0.011851851851851851, 0.016296296296296295, 0.01925925925925926, 0.09777777777777778, 0.3111111111111111, 0.9451851851851852, 0.9096296296296297, 0.09037037037037036, 0.025185185185185185, 0.035555555555555556, 0.02074074074074074, 0.007407407407407408, 0.008888888888888889, 0.007407407407407408, 0.007407407407407408, 0.007407407407407408, 0.007407407407407408, 0.007407407407407408, 0.9155555555555556, 0.9422222222222222, 0.7777777777777778, 0.0044444444444444444, 0.014814814814814815, 0.007407407407407408, 0.005925925925925926, 0.0044444444444444444, 0.0044444444444444444, 0.0044444444444444444, 0.0044444444444444444, 0.0044444444444444444, 0.0044444444444444444, 0.0044444444444444444, 0.0044444444444444444, 0.0044444444444444444, 0.005925925925925926, 0.008888888888888889, 0.005925925925925926, 0.0044444444444444444, 0.0044444444444444444, 0.0044444444444444444, 0.0044444444444444444, 0.005925925925925926, 0.005925925925925926, 0.0044444444444444444, 0.0044444444444444444, 0.0044444444444444444, 0.005925925925925926, 0.005925925925925926, 0.008888888888888889, 0.013333333333333334, 0.017777777777777778, 0.21185185185185185, 0.05333333333333334, 0.04296296296296296, 0.9318518518518518, 0.007407407407407408, 0.005925925925925926, 0.005925925925925926, 0.005925925925925926, 0.005925925925925926, 0.005925925925925926, 0.007407407407407408, 0.011851851851851851, 0.017777777777777778, 0.01925925925925926, 0.023703703703703703, 0.03111111111111111, 0.034074074074074076, 0.035555555555555556, 0.03851851851851852, 0.04296296296296296, 0.2607407407407407, 0.4711111111111111], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/CelD_N.gap.json b/pfam_gap_rates/CelD_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c329c1e6c86335678bd3a57ac2ea032d2fc9845c
--- /dev/null
+++ b/pfam_gap_rates/CelD_N.gap.json
@@ -0,0 +1 @@
+{"family": "CelD_N", "n_seqs": 374, "length": 102, "gap_rates": [0.7459893048128342, 0.4679144385026738, 0.2967914438502674, 0.16844919786096257, 0.11764705882352941, 0.06417112299465241, 0.040106951871657755, 0.03208556149732621, 0.026737967914438502, 0.013368983957219251, 0.013368983957219251, 0.013368983957219251, 0.013368983957219251, 0.0106951871657754, 0.0106951871657754, 0.0106951871657754, 0.0106951871657754, 0.0106951871657754, 0.0106951871657754, 0.0106951871657754, 0.0106951871657754, 0.0106951871657754, 0.0106951871657754, 0.7700534759358288, 0.8021390374331551, 0.8743315508021391, 0.9171122994652406, 0.9491978609625669, 0.8983957219251337, 0.8663101604278075, 0.7807486631016043, 0.7192513368983957, 0.4358288770053476, 0.12566844919786097, 0.05614973262032086, 0.029411764705882353, 0.0106951871657754, 0.016042780748663103, 0.0481283422459893, 0.27807486631016043, 0.23529411764705882, 0.008021390374331552, 0.0053475935828877, 0.00267379679144385, 0.0053475935828877, 0.393048128342246, 0.05614973262032086, 0.0213903743315508, 0.0053475935828877, 0.0, 0.0, 0.0053475935828877, 0.0053475935828877, 0.00267379679144385, 0.0053475935828877, 0.0053475935828877, 0.0053475935828877, 0.008021390374331552, 0.9010695187165776, 0.9171122994652406, 0.7593582887700535, 0.00267379679144385, 0.008021390374331552, 0.008021390374331552, 0.008021390374331552, 0.08021390374331551, 0.07219251336898395, 0.058823529411764705, 0.9144385026737968, 0.9491978609625669, 0.9491978609625669, 0.9331550802139037, 0.8636363636363636, 0.053475935828877004, 0.0427807486631016, 0.01871657754010695, 0.008021390374331552, 0.0106951871657754, 0.008021390374331552, 0.0053475935828877, 0.00267379679144385, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.00267379679144385, 0.0, 0.0, 0.0, 0.0, 0.8181818181818182, 0.0, 0.0, 0.0, 0.02406417112299465, 0.053475935828877004, 0.07754010695187166, 0.12299465240641712, 0.2620320855614973, 0.6016042780748663], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/ChAPs.gap.json b/pfam_gap_rates/ChAPs.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..4c47472217ffe6caec60b3d3b80e8df23aee9526
--- /dev/null
+++ b/pfam_gap_rates/ChAPs.gap.json
@@ -0,0 +1 @@
+{"family": "ChAPs", "n_seqs": 273, "length": 420, "gap_rates": [0.5311355311355311, 0.47619047619047616, 0.4358974358974359, 0.43223443223443225, 0.42124542124542125, 0.41025641025641024, 0.4065934065934066, 0.4065934065934066, 0.4065934065934066, 0.40293040293040294, 0.40293040293040294, 0.40293040293040294, 0.40293040293040294, 0.40293040293040294, 0.40293040293040294, 0.40293040293040294, 0.40293040293040294, 0.40293040293040294, 0.4065934065934066, 0.40293040293040294, 0.40293040293040294, 0.40293040293040294, 0.40293040293040294, 0.40293040293040294, 0.40293040293040294, 0.40293040293040294, 0.4065934065934066, 0.4065934065934066, 0.40293040293040294, 0.40293040293040294, 0.4065934065934066, 0.8717948717948718, 0.6776556776556777, 0.6446886446886447, 0.63003663003663, 0.6263736263736264, 0.6446886446886447, 0.6373626373626373, 0.5311355311355311, 0.4908424908424908, 0.4139194139194139, 0.4249084249084249, 0.43223443223443225, 0.40293040293040294, 0.3992673992673993, 0.3956043956043956, 0.40293040293040294, 0.41025641025641024, 0.3956043956043956, 0.3882783882783883, 0.3882783882783883, 0.3882783882783883, 0.3882783882783883, 0.3882783882783883, 0.3882783882783883, 0.3882783882783883, 0.3882783882783883, 0.3882783882783883, 0.3882783882783883, 0.3882783882783883, 0.3882783882783883, 0.3882783882783883, 0.3772893772893773, 0.3772893772893773, 0.38095238095238093, 0.38095238095238093, 0.3772893772893773, 0.38095238095238093, 0.38095238095238093, 0.3772893772893773, 0.3772893772893773, 0.38461538461538464, 0.38461538461538464, 0.38461538461538464, 0.38461538461538464, 0.39194139194139194, 0.3956043956043956, 0.3956043956043956, 0.3956043956043956, 0.3992673992673993, 0.3956043956043956, 0.3956043956043956, 0.3956043956043956, 0.39194139194139194, 0.9120879120879121, 0.9267399267399268, 0.9413919413919414, 0.9157509157509157, 0.8937728937728938, 0.38461538461538464, 0.3882783882783883, 0.38095238095238093, 0.38095238095238093, 0.38095238095238093, 0.3772893772893773, 0.3772893772893773, 0.3772893772893773, 0.3772893772893773, 0.3772893772893773, 0.3772893772893773, 0.38095238095238093, 0.3772893772893773, 0.3772893772893773, 0.37362637362637363, 0.37362637362637363, 0.37362637362637363, 0.37362637362637363, 0.3663003663003663, 0.3772893772893773, 0.3882783882783883, 0.3956043956043956, 0.39194139194139194, 0.39194139194139194, 0.38461538461538464, 0.9084249084249084, 0.5567765567765568, 0.5347985347985348, 0.6483516483516484, 0.6336996336996337, 0.5238095238095238, 0.5054945054945055, 0.40293040293040294, 0.3992673992673993, 0.39194139194139194, 0.39194139194139194, 0.3882783882783883, 0.38461538461538464, 0.39194139194139194, 0.39194139194139194, 0.39194139194139194, 0.39194139194139194, 0.38461538461538464, 0.38461538461538464, 0.38461538461538464, 0.3882783882783883, 0.39194139194139194, 0.39194139194139194, 0.3882783882783883, 0.38461538461538464, 0.38095238095238093, 0.38461538461538464, 0.8827838827838828, 0.8681318681318682, 0.8461538461538461, 0.3772893772893773, 0.37362637362637363, 0.36996336996337, 0.36996336996337, 0.37362637362637363, 0.37362637362637363, 0.38095238095238093, 0.37362637362637363, 0.3663003663003663, 0.36996336996337, 0.3626373626373626, 0.358974358974359, 0.358974358974359, 0.3553113553113553, 0.3626373626373626, 0.3516483516483517, 0.3516483516483517, 0.3516483516483517, 0.358974358974359, 0.358974358974359, 0.3553113553113553, 0.3553113553113553, 0.3443223443223443, 0.3443223443223443, 0.34065934065934067, 0.3443223443223443, 0.34065934065934067, 0.326007326007326, 0.326007326007326, 0.32234432234432236, 0.31868131868131866, 0.326007326007326, 0.32234432234432236, 0.31135531135531136, 0.304029304029304, 0.30036630036630035, 0.29304029304029305, 0.2857142857142857, 0.28205128205128205, 0.27472527472527475, 0.27106227106227104, 0.2673992673992674, 0.2490842490842491, 0.24175824175824176, 0.23809523809523808, 0.23076923076923078, 0.23076923076923078, 0.2271062271062271, 0.23076923076923078, 0.23076923076923078, 0.2271062271062271, 0.2271062271062271, 0.2271062271062271, 0.22344322344322345, 0.22344322344322345, 0.21978021978021978, 0.21611721611721613, 0.21245421245421245, 0.21245421245421245, 0.9413919413919414, 0.19413919413919414, 0.19413919413919414, 0.18681318681318682, 0.18681318681318682, 0.18681318681318682, 0.18681318681318682, 0.18681318681318682, 0.18315018315018314, 0.18681318681318682, 0.18681318681318682, 0.19047619047619047, 0.19047619047619047, 0.18681318681318682, 0.18681318681318682, 0.18681318681318682, 0.19047619047619047, 0.18681318681318682, 0.18681318681318682, 0.1794871794871795, 0.17582417582417584, 0.17582417582417584, 0.17582417582417584, 0.1684981684981685, 0.1684981684981685, 0.16483516483516483, 0.16483516483516483, 0.1575091575091575, 0.16117216117216118, 0.9413919413919414, 0.945054945054945, 0.9340659340659341, 0.1575091575091575, 0.1794871794871795, 0.1794871794871795, 0.1794871794871795, 0.1794871794871795, 0.1575091575091575, 0.9120879120879121, 0.9340659340659341, 0.9487179487179487, 0.9487179487179487, 0.9230769230769231, 0.9047619047619048, 0.1575091575091575, 0.1575091575091575, 0.15384615384615385, 0.14652014652014653, 0.15018315018315018, 0.15384615384615385, 0.1391941391941392, 0.13186813186813187, 0.13186813186813187, 0.1282051282051282, 0.1282051282051282, 0.1282051282051282, 0.12454212454212454, 0.12454212454212454, 0.1282051282051282, 0.1282051282051282, 0.12087912087912088, 0.8205128205128205, 0.8351648351648352, 0.8388278388278388, 0.8461538461538461, 0.8461538461538461, 0.8461538461538461, 0.8461538461538461, 0.8461538461538461, 0.8388278388278388, 0.8351648351648352, 0.7948717948717948, 0.12087912087912088, 0.12087912087912088, 0.12454212454212454, 0.12454212454212454, 0.12454212454212454, 0.1282051282051282, 0.1282051282051282, 0.1282051282051282, 0.13186813186813187, 0.1282051282051282, 0.1282051282051282, 0.1282051282051282, 0.13186813186813187, 0.13186813186813187, 0.13186813186813187, 0.13553113553113552, 0.13553113553113552, 0.13553113553113552, 0.1391941391941392, 0.1391941391941392, 0.14285714285714285, 0.1391941391941392, 0.13553113553113552, 0.13553113553113552, 0.13553113553113552, 0.14285714285714285, 0.14652014652014653, 0.14285714285714285, 0.14652014652014653, 0.15018315018315018, 0.15018315018315018, 0.15384615384615385, 0.15384615384615385, 0.15384615384615385, 0.15018315018315018, 0.15384615384615385, 0.16483516483516483, 0.17216117216117216, 0.20146520146520147, 0.23809523809523808, 0.25274725274725274, 0.2783882783882784, 0.304029304029304, 0.31868131868131866, 0.34798534798534797, 0.34798534798534797, 0.3516483516483517, 0.37362637362637363, 0.38095238095238093, 0.38461538461538464, 0.40293040293040294, 0.41025641025641024, 0.41025641025641024, 0.4139194139194139, 0.42124542124542125, 0.42124542124542125, 0.43223443223443225, 0.42857142857142855, 0.4358974358974359, 0.43223443223443225, 0.4358974358974359, 0.4358974358974359, 0.9267399267399268, 0.8937728937728938, 0.8864468864468864, 0.8791208791208791, 0.43956043956043955, 0.43956043956043955, 0.43956043956043955, 0.43956043956043955, 0.43956043956043955, 0.43956043956043955, 0.43956043956043955, 0.45787545787545786, 0.47985347985347987, 0.48717948717948717, 0.4835164835164835, 0.47985347985347987, 0.46886446886446886, 0.4542124542124542, 0.4468864468864469, 0.45054945054945056, 0.45054945054945056, 0.4468864468864469, 0.4432234432234432, 0.45787545787545786, 0.46153846153846156, 0.8168498168498168, 0.7582417582417582, 0.73992673992674, 0.5311355311355311, 0.45054945054945056, 0.4432234432234432, 0.43956043956043955, 0.4358974358974359, 0.43223443223443225, 0.43223443223443225, 0.4358974358974359, 0.4358974358974359, 0.4358974358974359, 0.43223443223443225, 0.42857142857142855, 0.4249084249084249, 0.4249084249084249, 0.4249084249084249, 0.4249084249084249, 0.4249084249084249, 0.42124542124542125, 0.4175824175824176, 0.41025641025641024, 0.41025641025641024, 0.40293040293040294, 0.3992673992673993, 0.3992673992673993, 0.3992673992673993, 0.3992673992673993, 0.3992673992673993, 0.3992673992673993, 0.3992673992673993, 0.3956043956043956, 0.3956043956043956, 0.3956043956043956, 0.3956043956043956, 0.3956043956043956, 0.3956043956043956, 0.3956043956043956, 0.3956043956043956, 0.3956043956043956, 0.3956043956043956, 0.3956043956043956, 0.3956043956043956, 0.3956043956043956, 0.3992673992673993, 0.3992673992673993, 0.3992673992673993, 0.3992673992673993, 0.3992673992673993, 0.4065934065934066, 0.4139194139194139, 0.4175824175824176, 0.4175824175824176, 0.42124542124542125, 0.43956043956043955, 0.46153846153846156, 0.48717948717948717], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/ChaC.gap.json b/pfam_gap_rates/ChaC.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..44a5114136926a0cc5205cdae7281764accd5e4d
--- /dev/null
+++ b/pfam_gap_rates/ChaC.gap.json
@@ -0,0 +1 @@
+{"family": "ChaC", "n_seqs": 716, "length": 213, "gap_rates": [0.3254189944134078, 0.21508379888268156, 0.14804469273743018, 0.14385474860335196, 0.1424581005586592, 0.13966480446927373, 0.13966480446927373, 0.138268156424581, 0.138268156424581, 0.1340782122905028, 0.1340782122905028, 0.1340782122905028, 0.1340782122905028, 0.1340782122905028, 0.1340782122905028, 0.1340782122905028, 0.1340782122905028, 0.1340782122905028, 0.13547486033519554, 0.13128491620111732, 0.12988826815642457, 0.12988826815642457, 0.12849162011173185, 0.12988826815642457, 0.12988826815642457, 0.1270949720670391, 0.1270949720670391, 0.12849162011173185, 0.1270949720670391, 0.12849162011173185, 0.13128491620111732, 0.11452513966480447, 0.11731843575418995, 0.11033519553072625, 0.1005586592178771, 0.0935754189944134, 0.09636871508379888, 0.08798882681564246, 0.0824022346368715, 0.08379888268156424, 0.08379888268156424, 0.08379888268156424, 0.08519553072625698, 0.08100558659217877, 0.08100558659217877, 0.08100558659217877, 0.08100558659217877, 0.07960893854748603, 0.08100558659217877, 0.0824022346368715, 0.08379888268156424, 0.08379888268156424, 0.0824022346368715, 0.08100558659217877, 0.07960893854748603, 0.3812849162011173, 0.33519553072625696, 0.7304469273743017, 0.7918994413407822, 0.7918994413407822, 0.8016759776536313, 0.8016759776536313, 0.8156424581005587, 0.9259776536312849, 0.9441340782122905, 0.9497206703910615, 0.9427374301675978, 0.8659217877094972, 0.8044692737430168, 0.8016759776536313, 0.797486033519553, 0.7918994413407822, 0.7891061452513967, 0.7192737430167597, 0.06284916201117319, 0.06284916201117319, 0.06005586592178771, 0.06424581005586592, 0.06424581005586592, 0.061452513966480445, 0.05726256983240224, 0.05726256983240224, 0.05726256983240224, 0.05726256983240224, 0.05726256983240224, 0.05726256983240224, 0.055865921787709494, 0.07681564245810056, 0.12150837988826815, 0.8938547486033519, 0.11731843575418995, 0.11312849162011174, 0.0824022346368715, 0.06983240223463687, 0.06564245810055866, 0.06424581005586592, 0.055865921787709494, 0.05446927374301676, 0.05726256983240224, 0.05446927374301676, 0.05446927374301676, 0.05726256983240224, 0.505586592178771, 0.4860335195530726, 0.11312849162011174, 0.24162011173184358, 0.18435754189944134, 0.10614525139664804, 0.09636871508379888, 0.0893854748603352, 0.09217877094972067, 0.09078212290502793, 0.08100558659217877, 0.07960893854748603, 0.08100558659217877, 0.11033519553072625, 0.8519553072625698, 0.8812849162011173, 0.9008379888268156, 0.9175977653631285, 0.9287709497206704, 0.9399441340782123, 0.9455307262569832, 0.9427374301675978, 0.9371508379888268, 0.9245810055865922, 0.9064245810055865, 0.8952513966480447, 0.8631284916201117, 0.8435754189944135, 0.6578212290502793, 0.3770949720670391, 0.308659217877095, 0.3198324022346369, 0.1494413407821229, 0.10754189944134078, 0.09217877094972067, 0.09078212290502793, 0.13547486033519554, 0.5893854748603352, 0.4818435754189944, 0.08100558659217877, 0.0782122905027933, 0.0782122905027933, 0.07402234636871509, 0.07402234636871509, 0.07402234636871509, 0.07262569832402235, 0.07402234636871509, 0.0712290502793296, 0.06983240223463687, 0.9217877094972067, 0.9231843575418994, 0.9189944134078212, 0.0712290502793296, 0.0712290502793296, 0.06843575418994413, 0.06843575418994413, 0.0712290502793296, 0.0893854748603352, 0.08519553072625698, 0.07681564245810056, 0.07541899441340782, 0.07541899441340782, 0.0782122905027933, 0.07681564245810056, 0.0782122905027933, 0.0782122905027933, 0.0782122905027933, 0.0782122905027933, 0.07960893854748603, 0.07960893854748603, 0.07960893854748603, 0.07960893854748603, 0.07960893854748603, 0.07960893854748603, 0.07960893854748603, 0.07960893854748603, 0.07960893854748603, 0.07960893854748603, 0.07960893854748603, 0.07960893854748603, 0.08100558659217877, 0.0824022346368715, 0.0824022346368715, 0.0824022346368715, 0.08519553072625698, 0.08519553072625698, 0.08519553072625698, 0.08519553072625698, 0.08659217877094973, 0.08798882681564246, 0.0893854748603352, 0.09078212290502793, 0.0935754189944134, 0.09776536312849161, 0.6452513966480447, 0.6424581005586593, 0.10614525139664804, 0.10474860335195531, 0.10335195530726257, 0.10335195530726257, 0.10614525139664804, 0.10754189944134078, 0.10893854748603352, 0.11033519553072625, 0.11452513966480447, 0.12150837988826815, 0.13966480446927373, 0.2011173184357542, 0.3058659217877095, 0.4036312849162011, 0.6787709497206704], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Chal_sti_synt_N.gap.json b/pfam_gap_rates/Chal_sti_synt_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..2e414fe11a9e8de0f6af63a32b060ef7919ec68c
--- /dev/null
+++ b/pfam_gap_rates/Chal_sti_synt_N.gap.json
@@ -0,0 +1 @@
+{"family": "Chal_sti_synt_N", "n_seqs": 860, "length": 224, "gap_rates": [0.7988372093023256, 0.7581395348837209, 0.7290697674418605, 0.7104651162790697, 0.6895348837209302, 0.663953488372093, 0.6348837209302326, 0.6255813953488372, 0.6093023255813953, 0.5953488372093023, 0.5848837209302326, 0.5651162790697675, 0.5186046511627908, 0.4604651162790698, 0.3953488372093023, 0.37906976744186044, 0.36511627906976746, 0.3558139534883721, 0.3511627906976744, 0.34186046511627904, 0.336046511627907, 0.33372093023255817, 0.3313953488372093, 0.3302325581395349, 0.32906976744186045, 0.3325581395348837, 0.3302325581395349, 0.3267441860465116, 0.3302325581395349, 0.33372093023255817, 0.3313953488372093, 0.3302325581395349, 0.336046511627907, 0.3453488372093023, 0.3558139534883721, 0.3453488372093023, 0.3395348837209302, 0.3302325581395349, 0.3313953488372093, 0.3453488372093023, 0.3546511627906977, 0.3511627906976744, 0.3383720930232558, 0.3383720930232558, 0.5476744186046512, 0.4116279069767442, 0.3581395348837209, 0.3372093023255814, 0.34418604651162793, 0.3186046511627907, 0.3081395348837209, 0.29651162790697677, 0.30697674418604654, 0.2941860465116279, 0.28837209302325584, 0.29069767441860467, 0.28488372093023256, 0.2872093023255814, 0.28255813953488373, 0.27906976744186046, 0.27674418604651163, 0.2779069767441861, 0.27674418604651163, 0.27674418604651163, 0.27674418604651163, 0.2802325581395349, 0.29186046511627906, 0.29767441860465116, 0.30116279069767443, 0.34418604651162793, 0.3558139534883721, 0.36046511627906974, 0.32325581395348835, 0.313953488372093, 0.2895348837209302, 0.2813953488372093, 0.28488372093023256, 0.28488372093023256, 0.29186046511627906, 0.29186046511627906, 0.29186046511627906, 0.27906976744186046, 0.2616279069767442, 0.24651162790697675, 0.21627906976744185, 0.2069767441860465, 0.1930232558139535, 0.1872093023255814, 0.17093023255813952, 0.15930232558139534, 0.14651162790697675, 0.14069767441860465, 0.13837209302325582, 0.13604651162790699, 0.13023255813953488, 0.12093023255813953, 0.11976744186046512, 0.11511627906976744, 0.11046511627906977, 0.10697674418604651, 0.10348837209302325, 0.10465116279069768, 0.10697674418604651, 0.11046511627906977, 0.10813953488372093, 0.10813953488372093, 0.10930232558139535, 0.11511627906976744, 0.10813953488372093, 0.11395348837209303, 0.11511627906976744, 0.11046511627906977, 0.12093023255813953, 0.11511627906976744, 0.11046511627906977, 0.11162790697674418, 0.11162790697674418, 0.09767441860465116, 0.09651162790697675, 0.09534883720930233, 0.0941860465116279, 0.0941860465116279, 0.0941860465116279, 0.09302325581395349, 0.09534883720930233, 0.09186046511627907, 0.09186046511627907, 0.09186046511627907, 0.09186046511627907, 0.09069767441860466, 0.09651162790697675, 0.09883720930232558, 0.09534883720930233, 0.0941860465116279, 0.09534883720930233, 0.09534883720930233, 0.09651162790697675, 0.09651162790697675, 0.09767441860465116, 0.09767441860465116, 0.10116279069767442, 0.09767441860465116, 0.09767441860465116, 0.09767441860465116, 0.09767441860465116, 0.09767441860465116, 0.09883720930232558, 0.1, 0.1, 0.09883720930232558, 0.09767441860465116, 0.09767441860465116, 0.09534883720930233, 0.0872093023255814, 0.0872093023255814, 0.08837209302325581, 0.08604651162790698, 0.08372093023255814, 0.08488372093023255, 0.08604651162790698, 0.08604651162790698, 0.0872093023255814, 0.08604651162790698, 0.0872093023255814, 0.08837209302325581, 0.08837209302325581, 0.08837209302325581, 0.09069767441860466, 0.08953488372093023, 0.08837209302325581, 0.08604651162790698, 0.08372093023255814, 0.08372093023255814, 0.08372093023255814, 0.08604651162790698, 0.09651162790697675, 0.08604651162790698, 0.08604651162790698, 0.08953488372093023, 0.09069767441860466, 0.09302325581395349, 0.0872093023255814, 0.0872093023255814, 0.08953488372093023, 0.09186046511627907, 0.0872093023255814, 0.08837209302325581, 0.08604651162790698, 0.08488372093023255, 0.08488372093023255, 0.08372093023255814, 0.0872093023255814, 0.09186046511627907, 0.10348837209302325, 0.10697674418604651, 0.1558139534883721, 0.23372093023255813, 0.19186046511627908, 0.15813953488372093, 0.15813953488372093, 0.14767441860465116, 0.14767441860465116, 0.11511627906976744, 0.10348837209302325, 0.08604651162790698, 0.08837209302325581, 0.08953488372093023, 0.08953488372093023, 0.09186046511627907, 0.09302325581395349, 0.0941860465116279, 0.09534883720930233, 0.09651162790697675, 0.09767441860465116, 0.09883720930232558, 0.09767441860465116, 0.09767441860465116, 0.09883720930232558, 0.10116279069767442, 0.12093023255813953, 0.22906976744186047, 0.3244186046511628, 0.43372093023255814, 0.5616279069767441], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Chalcone.gap.json b/pfam_gap_rates/Chalcone.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e1643c5b8082f7579fac2a4a85f4ad3457f45275
--- /dev/null
+++ b/pfam_gap_rates/Chalcone.gap.json
@@ -0,0 +1 @@
+{"family": "Chalcone", "n_seqs": 116, "length": 208, "gap_rates": [0.5344827586206896, 0.5, 0.3017241379310345, 0.27586206896551724, 0.25, 0.2413793103448276, 0.2413793103448276, 0.2413793103448276, 0.2413793103448276, 0.2413793103448276, 0.25, 0.3448275862068966, 0.3879310344827586, 0.35344827586206895, 0.2413793103448276, 0.1896551724137931, 0.1896551724137931, 0.1896551724137931, 0.19827586206896552, 0.1896551724137931, 0.1810344827586207, 0.15517241379310345, 0.14655172413793102, 0.12931034482758622, 0.12931034482758622, 0.14655172413793102, 0.14655172413793102, 0.20689655172413793, 0.20689655172413793, 0.20689655172413793, 0.21551724137931033, 0.14655172413793102, 0.13793103448275862, 0.11206896551724138, 0.10344827586206896, 0.10344827586206896, 0.10344827586206896, 0.08620689655172414, 0.08620689655172414, 0.08620689655172414, 0.08620689655172414, 0.08620689655172414, 0.08620689655172414, 0.08620689655172414, 0.08620689655172414, 0.08620689655172414, 0.9137931034482759, 0.07758620689655173, 0.10344827586206896, 0.13793103448275862, 0.07758620689655173, 0.07758620689655173, 0.08620689655172414, 0.08620689655172414, 0.12931034482758622, 0.19827586206896552, 0.1810344827586207, 0.05172413793103448, 0.05172413793103448, 0.05172413793103448, 0.05172413793103448, 0.05172413793103448, 0.10344827586206896, 0.11206896551724138, 0.08620689655172414, 0.0603448275862069, 0.0603448275862069, 0.0603448275862069, 0.06896551724137931, 0.05172413793103448, 0.04310344827586207, 0.04310344827586207, 0.04310344827586207, 0.04310344827586207, 0.04310344827586207, 0.04310344827586207, 0.04310344827586207, 0.04310344827586207, 0.02586206896551724, 0.02586206896551724, 0.02586206896551724, 0.02586206896551724, 0.017241379310344827, 0.017241379310344827, 0.017241379310344827, 0.017241379310344827, 0.017241379310344827, 0.017241379310344827, 0.008620689655172414, 0.008620689655172414, 0.008620689655172414, 0.008620689655172414, 0.008620689655172414, 0.008620689655172414, 0.008620689655172414, 0.008620689655172414, 0.008620689655172414, 0.008620689655172414, 0.008620689655172414, 0.008620689655172414, 0.008620689655172414, 0.008620689655172414, 0.008620689655172414, 0.034482758620689655, 0.06896551724137931, 0.09482758620689655, 0.07758620689655173, 0.0603448275862069, 0.0603448275862069, 0.06896551724137931, 0.05172413793103448, 0.0603448275862069, 0.07758620689655173, 0.06896551724137931, 0.08620689655172414, 0.06896551724137931, 0.06896551724137931, 0.06896551724137931, 0.05172413793103448, 0.02586206896551724, 0.034482758620689655, 0.017241379310344827, 0.017241379310344827, 0.008620689655172414, 0.017241379310344827, 0.017241379310344827, 0.008620689655172414, 0.02586206896551724, 0.02586206896551724, 0.02586206896551724, 0.008620689655172414, 0.008620689655172414, 0.008620689655172414, 0.008620689655172414, 0.008620689655172414, 0.017241379310344827, 0.017241379310344827, 0.02586206896551724, 0.02586206896551724, 0.02586206896551724, 0.02586206896551724, 0.02586206896551724, 0.02586206896551724, 0.02586206896551724, 0.07758620689655173, 0.02586206896551724, 0.04310344827586207, 0.02586206896551724, 0.034482758620689655, 0.9310344827586207, 0.02586206896551724, 0.02586206896551724, 0.02586206896551724, 0.02586206896551724, 0.9482758620689655, 0.034482758620689655, 0.04310344827586207, 0.06896551724137931, 0.06896551724137931, 0.08620689655172414, 0.08620689655172414, 0.12931034482758622, 0.19827586206896552, 0.2672413793103448, 0.21551724137931033, 0.15517241379310345, 0.9310344827586207, 0.12931034482758622, 0.06896551724137931, 0.07758620689655173, 0.06896551724137931, 0.06896551724137931, 0.06896551724137931, 0.06896551724137931, 0.06896551724137931, 0.07758620689655173, 0.07758620689655173, 0.07758620689655173, 0.07758620689655173, 0.07758620689655173, 0.07758620689655173, 0.07758620689655173, 0.07758620689655173, 0.07758620689655173, 0.07758620689655173, 0.07758620689655173, 0.07758620689655173, 0.8017241379310345, 0.07758620689655173, 0.07758620689655173, 0.07758620689655173, 0.07758620689655173, 0.07758620689655173, 0.07758620689655173, 0.07758620689655173, 0.07758620689655173, 0.07758620689655173, 0.07758620689655173, 0.07758620689655173, 0.09482758620689655, 0.09482758620689655, 0.09482758620689655, 0.10344827586206896, 0.1206896551724138, 0.1206896551724138, 0.20689655172413793, 0.3879310344827586, 0.6379310344827587], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Chalcone_3.gap.json b/pfam_gap_rates/Chalcone_3.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..800605984e9d5bb5770ef3c1f20b41533845d0a9
--- /dev/null
+++ b/pfam_gap_rates/Chalcone_3.gap.json
@@ -0,0 +1 @@
+{"family": "Chalcone_3", "n_seqs": 352, "length": 189, "gap_rates": [0.8295454545454546, 0.6789772727272727, 0.6051136363636364, 0.5681818181818182, 0.5539772727272727, 0.5284090909090909, 0.5198863636363636, 0.5085227272727273, 0.4943181818181818, 0.48011363636363635, 0.48011363636363635, 0.4772727272727273, 0.46875, 0.4659090909090909, 0.45170454545454547, 0.44886363636363635, 0.41761363636363635, 0.3977272727272727, 0.3721590909090909, 0.3465909090909091, 0.3125, 0.2784090909090909, 0.2727272727272727, 0.2528409090909091, 0.25, 0.2471590909090909, 0.24147727272727273, 0.23863636363636365, 0.2159090909090909, 0.19602272727272727, 0.17613636363636365, 0.16761363636363635, 0.15056818181818182, 0.15056818181818182, 0.14772727272727273, 0.14488636363636365, 0.14488636363636365, 0.14488636363636365, 0.14488636363636365, 0.14204545454545456, 0.14204545454545456, 0.14488636363636365, 0.14204545454545456, 0.14204545454545456, 0.14488636363636365, 0.1846590909090909, 0.17897727272727273, 0.20738636363636365, 0.1846590909090909, 0.16477272727272727, 0.1590909090909091, 0.14772727272727273, 0.16193181818181818, 0.20738636363636365, 0.17045454545454544, 0.16193181818181818, 0.8948863636363636, 0.19886363636363635, 0.8892045454545454, 0.9005681818181818, 0.9090909090909091, 0.9204545454545454, 0.9403409090909091, 0.9460227272727273, 0.9431818181818182, 0.9204545454545454, 0.9119318181818182, 0.9005681818181818, 0.8977272727272727, 0.7670454545454546, 0.23011363636363635, 0.20454545454545456, 0.06818181818181818, 0.056818181818181816, 0.045454545454545456, 0.04261363636363636, 0.04261363636363636, 0.03977272727272727, 0.20454545454545456, 0.6477272727272727, 0.05965909090909091, 0.13068181818181818, 0.022727272727272728, 0.022727272727272728, 0.022727272727272728, 0.022727272727272728, 0.022727272727272728, 0.022727272727272728, 0.022727272727272728, 0.022727272727272728, 0.022727272727272728, 0.022727272727272728, 0.022727272727272728, 0.028409090909090908, 0.022727272727272728, 0.022727272727272728, 0.028409090909090908, 0.03125, 0.8863636363636364, 0.03125, 0.8977272727272727, 0.028409090909090908, 0.8863636363636364, 0.06818181818181818, 0.04261363636363636, 0.06818181818181818, 0.8835227272727273, 0.04261363636363636, 0.048295454545454544, 0.05397727272727273, 0.048295454545454544, 0.02556818181818182, 0.011363636363636364, 0.036931818181818184, 0.02556818181818182, 0.03125, 0.022727272727272728, 0.014204545454545454, 0.014204545454545454, 0.011363636363636364, 0.017045454545454544, 0.017045454545454544, 0.036931818181818184, 0.9119318181818182, 0.9005681818181818, 0.40625, 0.8267045454545454, 0.8096590909090909, 0.008522727272727272, 0.008522727272727272, 0.008522727272727272, 0.008522727272727272, 0.008522727272727272, 0.008522727272727272, 0.008522727272727272, 0.008522727272727272, 0.011363636363636364, 0.008522727272727272, 0.036931818181818184, 0.019886363636363636, 0.008522727272727272, 0.05397727272727273, 0.022727272727272728, 0.011363636363636364, 0.03125, 0.9403409090909091, 0.005681818181818182, 0.014204545454545454, 0.008522727272727272, 0.005681818181818182, 0.008522727272727272, 0.002840909090909091, 0.002840909090909091, 0.005681818181818182, 0.002840909090909091, 0.002840909090909091, 0.002840909090909091, 0.84375, 0.002840909090909091, 0.002840909090909091, 0.002840909090909091, 0.008522727272727272, 0.005681818181818182, 0.011363636363636364, 0.005681818181818182, 0.002840909090909091, 0.005681818181818182, 0.002840909090909091, 0.002840909090909091, 0.002840909090909091, 0.002840909090909091, 0.005681818181818182, 0.008522727272727272, 0.014204545454545454, 0.017045454545454544, 0.017045454545454544, 0.036931818181818184, 0.04261363636363636, 0.048295454545454544, 0.07386363636363637, 0.07954545454545454, 0.07954545454545454, 0.08238636363636363, 0.11079545454545454, 0.11647727272727272, 0.1590909090909091, 0.20454545454545456, 0.25, 0.44886363636363635], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Chitin_synth_1.gap.json b/pfam_gap_rates/Chitin_synth_1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..5ede33137baecc69bbb233d3f981fd8444616429
--- /dev/null
+++ b/pfam_gap_rates/Chitin_synth_1.gap.json
@@ -0,0 +1 @@
+{"family": "Chitin_synth_1", "n_seqs": 526, "length": 181, "gap_rates": [0.12167300380228137, 0.053231939163498096, 0.04752851711026616, 0.04752851711026616, 0.045627376425855515, 0.045627376425855515, 0.043726235741444866, 0.04182509505703422, 0.039923954372623575, 0.039923954372623575, 0.03802281368821293, 0.03612167300380228, 0.03231939163498099, 0.03231939163498099, 0.03231939163498099, 0.03231939163498099, 0.03231939163498099, 0.03231939163498099, 0.03231939163498099, 0.030418250950570342, 0.030418250950570342, 0.030418250950570342, 0.030418250950570342, 0.030418250950570342, 0.030418250950570342, 0.09505703422053231, 0.08555133079847908, 0.11216730038022814, 0.09695817490494296, 0.09315589353612168, 0.07224334600760456, 0.051330798479087454, 0.03802281368821293, 0.9125475285171103, 0.9125475285171103, 0.9125475285171103, 0.9125475285171103, 0.9125475285171103, 0.9106463878326996, 0.03802281368821293, 0.034220532319391636, 0.03802281368821293, 0.8307984790874525, 0.8307984790874525, 0.060836501901140684, 0.03802281368821293, 0.03231939163498099, 0.030418250950570342, 0.03231939163498099, 0.03231939163498099, 0.03231939163498099, 0.03231939163498099, 0.030418250950570342, 0.03231939163498099, 0.034220532319391636, 0.034220532319391636, 0.03231939163498099, 0.03231939163498099, 0.03231939163498099, 0.030418250950570342, 0.030418250950570342, 0.030418250950570342, 0.030418250950570342, 0.034220532319391636, 0.034220532319391636, 0.03612167300380228, 0.03802281368821293, 0.03802281368821293, 0.03802281368821293, 0.03612167300380228, 0.03612167300380228, 0.03612167300380228, 0.03612167300380228, 0.034220532319391636, 0.03231939163498099, 0.9372623574144486, 0.030418250950570342, 0.03231939163498099, 0.03231939163498099, 0.030418250950570342, 0.030418250950570342, 0.03231939163498099, 0.03231939163498099, 0.026615969581749048, 0.028517110266159697, 0.9486692015209125, 0.026615969581749048, 0.024714828897338403, 0.024714828897338403, 0.026615969581749048, 0.024714828897338403, 0.024714828897338403, 0.024714828897338403, 0.024714828897338403, 0.024714828897338403, 0.024714828897338403, 0.02091254752851711, 0.02091254752851711, 0.024714828897338403, 0.026615969581749048, 0.030418250950570342, 0.03231939163498099, 0.03612167300380228, 0.051330798479087454, 0.055133079847908745, 0.7547528517110266, 0.8326996197718631, 0.7832699619771863, 0.7072243346007605, 0.10266159695817491, 0.11026615969581749, 0.09505703422053231, 0.0779467680608365, 0.0817490494296578, 0.07604562737642585, 0.07604562737642585, 0.06463878326996197, 0.8859315589353612, 0.8992395437262357, 0.8916349809885932, 0.8346007604562737, 0.0817490494296578, 0.03802281368821293, 0.026615969581749048, 0.017110266159695818, 0.017110266159695818, 0.019011406844106463, 0.019011406844106463, 0.017110266159695818, 0.019011406844106463, 0.019011406844106463, 0.034220532319391636, 0.034220532319391636, 0.017110266159695818, 0.017110266159695818, 0.017110266159695818, 0.019011406844106463, 0.019011406844106463, 0.019011406844106463, 0.019011406844106463, 0.019011406844106463, 0.019011406844106463, 0.019011406844106463, 0.019011406844106463, 0.02091254752851711, 0.02091254752851711, 0.02091254752851711, 0.022813688212927757, 0.02091254752851711, 0.02091254752851711, 0.02091254752851711, 0.02091254752851711, 0.02091254752851711, 0.02091254752851711, 0.02091254752851711, 0.02091254752851711, 0.026615969581749048, 0.026615969581749048, 0.026615969581749048, 0.026615969581749048, 0.026615969581749048, 0.028517110266159697, 0.028517110266159697, 0.028517110266159697, 0.030418250950570342, 0.030418250950570342, 0.030418250950570342, 0.030418250950570342, 0.030418250950570342, 0.030418250950570342, 0.03231939163498099, 0.034220532319391636, 0.034220532319391636, 0.034220532319391636, 0.034220532319391636, 0.034220532319391636, 0.03612167300380228, 0.03802281368821293, 0.039923954372623575, 0.055133079847908745, 0.07604562737642585], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/CitG.gap.json b/pfam_gap_rates/CitG.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..5da4761bd9dd95354ce6f6929f8917beff9dcc05
--- /dev/null
+++ b/pfam_gap_rates/CitG.gap.json
@@ -0,0 +1 @@
+{"family": "CitG", "n_seqs": 354, "length": 318, "gap_rates": [0.6807909604519774, 0.327683615819209, 0.14689265536723164, 0.10451977401129943, 0.06779661016949153, 0.06779661016949153, 0.06779661016949153, 0.062146892655367235, 0.062146892655367235, 0.05649717514124294, 0.05367231638418079, 0.05367231638418079, 0.05367231638418079, 0.05367231638418079, 0.05649717514124294, 0.2288135593220339, 0.05084745762711865, 0.05084745762711865, 0.05084745762711865, 0.05084745762711865, 0.05084745762711865, 0.05084745762711865, 0.0480225988700565, 0.0480225988700565, 0.0480225988700565, 0.05084745762711865, 0.05084745762711865, 0.3700564971751412, 0.3672316384180791, 0.059322033898305086, 0.0480225988700565, 0.05084745762711865, 0.0423728813559322, 0.0423728813559322, 0.0423728813559322, 0.03954802259887006, 0.03672316384180791, 0.03672316384180791, 0.03672316384180791, 0.03389830508474576, 0.03389830508474576, 0.03389830508474576, 0.03389830508474576, 0.03389830508474576, 0.03389830508474576, 0.03672316384180791, 0.03389830508474576, 0.03389830508474576, 0.03389830508474576, 0.03389830508474576, 0.03389830508474576, 0.03389830508474576, 0.3248587570621469, 0.3192090395480226, 0.307909604519774, 0.3050847457627119, 0.2909604519774011, 0.4661016949152542, 0.5169491525423728, 0.6807909604519774, 0.8022598870056498, 0.53954802259887, 0.4943502824858757, 0.307909604519774, 0.2853107344632768, 0.2937853107344633, 0.2824858757062147, 0.2288135593220339, 0.18926553672316385, 0.15819209039548024, 0.03389830508474576, 0.03389830508474576, 0.03389830508474576, 0.03389830508474576, 0.03389830508474576, 0.03389830508474576, 0.03389830508474576, 0.03389830508474576, 0.03389830508474576, 0.03672316384180791, 0.03672316384180791, 0.03389830508474576, 0.03389830508474576, 0.03672316384180791, 0.6892655367231638, 0.9378531073446328, 0.6892655367231638, 0.05084745762711865, 0.03672316384180791, 0.03672316384180791, 0.03672316384180791, 0.03389830508474576, 0.03389830508474576, 0.03389830508474576, 0.03389830508474576, 0.03389830508474576, 0.03389830508474576, 0.03389830508474576, 0.03389830508474576, 0.03389830508474576, 0.031073446327683617, 0.03389830508474576, 0.03672316384180791, 0.03672316384180791, 0.03672316384180791, 0.03672316384180791, 0.03672316384180791, 0.03672316384180791, 0.03672316384180791, 0.05649717514124294, 0.08757062146892655, 0.5451977401129944, 0.672316384180791, 0.8954802259887006, 0.9463276836158192, 0.9265536723163842, 0.8587570621468926, 0.6073446327683616, 0.4661016949152542, 0.3644067796610169, 0.3728813559322034, 0.2909604519774011, 0.2231638418079096, 0.19491525423728814, 0.12994350282485875, 0.1016949152542373, 0.0847457627118644, 0.07062146892655367, 0.096045197740113, 0.09322033898305085, 0.05084745762711865, 0.05084745762711865, 0.05367231638418079, 0.1016949152542373, 0.04519774011299435, 0.04519774011299435, 0.04519774011299435, 0.0480225988700565, 0.0903954802259887, 0.09887005649717515, 0.2853107344632768, 0.2033898305084746, 0.192090395480226, 0.6186440677966102, 0.6129943502824858, 0.6101694915254238, 0.6242937853107344, 0.5988700564971752, 0.596045197740113, 0.5847457627118644, 0.5819209039548022, 0.5903954802259888, 0.576271186440678, 0.5790960451977402, 0.5677966101694916, 0.6242937853107344, 0.5819209039548022, 0.5649717514124294, 0.5621468926553672, 0.556497175141243, 0.5649717514124294, 0.4548022598870056, 0.7966101694915254, 0.8220338983050848, 0.8305084745762712, 0.8333333333333334, 0.903954802259887, 0.940677966101695, 0.9491525423728814, 0.943502824858757, 0.9350282485875706, 0.8389830508474576, 0.8333333333333334, 0.827683615819209, 0.807909604519774, 0.788135593220339, 0.3615819209039548, 0.2966101694915254, 0.2288135593220339, 0.1864406779661017, 0.11299435028248588, 0.8163841807909604, 0.9491525423728814, 0.7344632768361582, 0.06779661016949153, 0.059322033898305086, 0.0480225988700565, 0.04519774011299435, 0.04519774011299435, 0.04519774011299435, 0.04519774011299435, 0.04519774011299435, 0.0480225988700565, 0.0480225988700565, 0.05084745762711865, 0.04519774011299435, 0.04519774011299435, 0.05084745762711865, 0.05084745762711865, 0.0480225988700565, 0.0480225988700565, 0.0480225988700565, 0.0480225988700565, 0.0480225988700565, 0.0480225988700565, 0.0480225988700565, 0.04519774011299435, 0.04519774011299435, 0.04519774011299435, 0.04519774011299435, 0.04519774011299435, 0.04519774011299435, 0.04519774011299435, 0.05084745762711865, 0.0480225988700565, 0.1440677966101695, 0.05084745762711865, 0.04519774011299435, 0.0847457627118644, 0.06497175141242938, 0.062146892655367235, 0.06779661016949153, 0.06779661016949153, 0.14689265536723164, 0.4011299435028249, 0.307909604519774, 0.2062146892655367, 0.1638418079096045, 0.10451977401129943, 0.0903954802259887, 0.06779661016949153, 0.05649717514124294, 0.0480225988700565, 0.04519774011299435, 0.04519774011299435, 0.04519774011299435, 0.04519774011299435, 0.04519774011299435, 0.04519774011299435, 0.0480225988700565, 0.0480225988700565, 0.04519774011299435, 0.03389830508474576, 0.03389830508474576, 0.03389830508474576, 0.03389830508474576, 0.03389830508474576, 0.03389830508474576, 0.03389830508474576, 0.03954802259887006, 0.03954802259887006, 0.03954802259887006, 0.03954802259887006, 0.03954802259887006, 0.03954802259887006, 0.9491525423728814, 0.0423728813559322, 0.04519774011299435, 0.04519774011299435, 0.04519774011299435, 0.0423728813559322, 0.03954802259887006, 0.03954802259887006, 0.03954802259887006, 0.0423728813559322, 0.0423728813559322, 0.0423728813559322, 0.0423728813559322, 0.0423728813559322, 0.0480225988700565, 0.04519774011299435, 0.0423728813559322, 0.0423728813559322, 0.0423728813559322, 0.9011299435028248, 0.5141242937853108, 0.3333333333333333, 0.2909604519774011, 0.22598870056497175, 0.18926553672316385, 0.17796610169491525, 0.1807909604519774, 0.5254237288135594, 0.11864406779661017, 0.062146892655367235, 0.05084745762711865, 0.0423728813559322, 0.03954802259887006, 0.03954802259887006, 0.03954802259887006, 0.03954802259887006, 0.03954802259887006, 0.03954802259887006, 0.03954802259887006, 0.03954802259887006, 0.03672316384180791, 0.03672316384180791, 0.03672316384180791, 0.03954802259887006, 0.9322033898305084, 0.9322033898305084, 0.03954802259887006, 0.03954802259887006, 0.0423728813559322, 0.0423728813559322, 0.0423728813559322, 0.0423728813559322, 0.0423728813559322, 0.0423728813559322, 0.0423728813559322, 0.0423728813559322, 0.04519774011299435, 0.04519774011299435, 0.04519774011299435, 0.05367231638418079, 0.07344632768361582, 0.11016949152542373, 0.6384180790960452], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Citrate_bind.gap.json b/pfam_gap_rates/Citrate_bind.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..6b24a96fa0a8a87887c262d363c5c37d16d786ff
--- /dev/null
+++ b/pfam_gap_rates/Citrate_bind.gap.json
@@ -0,0 +1 @@
+{"family": "Citrate_bind", "n_seqs": 387, "length": 180, "gap_rates": [0.3798449612403101, 0.26356589147286824, 0.18863049095607234, 0.17571059431524547, 0.16795865633074936, 0.165374677002584, 0.15503875968992248, 0.1524547803617571, 0.1524547803617571, 0.1524547803617571, 0.14987080103359174, 0.14987080103359174, 0.14987080103359174, 0.14987080103359174, 0.14987080103359174, 0.14470284237726097, 0.14470284237726097, 0.14470284237726097, 0.1421188630490956, 0.13695090439276486, 0.16020671834625322, 0.12661498708010335, 0.12144702842377261, 0.11627906976744186, 0.11369509043927649, 0.09819121447028424, 0.09819121447028424, 0.07235142118863049, 0.06201550387596899, 0.059431524547803614, 0.05426356589147287, 0.05426356589147287, 0.05426356589147287, 0.05426356589147287, 0.05167958656330749, 0.04909560723514212, 0.04909560723514212, 0.04909560723514212, 0.04909560723514212, 0.05167958656330749, 0.05167958656330749, 0.05167958656330749, 0.05167958656330749, 0.05167958656330749, 0.05167958656330749, 0.046511627906976744, 0.046511627906976744, 0.046511627906976744, 0.046511627906976744, 0.046511627906976744, 0.05167958656330749, 0.05167958656330749, 0.05167958656330749, 0.13695090439276486, 0.14470284237726097, 0.07493540051679587, 0.08527131782945736, 0.08527131782945736, 0.08010335917312661, 0.06976744186046512, 0.05426356589147287, 0.046511627906976744, 0.046511627906976744, 0.04909560723514212, 0.04909560723514212, 0.04909560723514212, 0.04909560723514212, 0.04909560723514212, 0.04909560723514212, 0.04909560723514212, 0.046511627906976744, 0.046511627906976744, 0.046511627906976744, 0.04392764857881137, 0.04909560723514212, 0.05167958656330749, 0.05167958656330749, 0.05167958656330749, 0.05167958656330749, 0.05167958656330749, 0.05167958656330749, 0.05167958656330749, 0.06459948320413436, 0.08010335917312661, 0.09043927648578812, 0.12919896640826872, 0.19638242894056848, 0.6098191214470284, 0.17829457364341086, 0.16795865633074936, 0.1343669250645995, 0.10852713178294573, 0.082687338501292, 0.9328165374677002, 0.056847545219638244, 0.05426356589147287, 0.05167958656330749, 0.05167958656330749, 0.05167958656330749, 0.05167958656330749, 0.05167958656330749, 0.04909560723514212, 0.05167958656330749, 0.04909560723514212, 0.04909560723514212, 0.05167958656330749, 0.05167958656330749, 0.04909560723514212, 0.04909560723514212, 0.04909560723514212, 0.04909560723514212, 0.04909560723514212, 0.04909560723514212, 0.04909560723514212, 0.05426356589147287, 0.05426356589147287, 0.05426356589147287, 0.05426356589147287, 0.05426356589147287, 0.05426356589147287, 0.05426356589147287, 0.05426356589147287, 0.056847545219638244, 0.05167958656330749, 0.05167958656330749, 0.1111111111111111, 0.1111111111111111, 0.10077519379844961, 0.06201550387596899, 0.06201550387596899, 0.04909560723514212, 0.05167958656330749, 0.04909560723514212, 0.04909560723514212, 0.04909560723514212, 0.05167958656330749, 0.05167958656330749, 0.05426356589147287, 0.05426356589147287, 0.05167958656330749, 0.05167958656330749, 0.05167958656330749, 0.05167958656330749, 0.05426356589147287, 0.056847545219638244, 0.056847545219638244, 0.056847545219638244, 0.056847545219638244, 0.059431524547803614, 0.05426356589147287, 0.05426356589147287, 0.056847545219638244, 0.05426356589147287, 0.059431524547803614, 0.059431524547803614, 0.07235142118863049, 0.08785529715762273, 0.07493540051679587, 0.06459948320413436, 0.06459948320413436, 0.06201550387596899, 0.06201550387596899, 0.06201550387596899, 0.06201550387596899, 0.06201550387596899, 0.06201550387596899, 0.06201550387596899, 0.06459948320413436, 0.06459948320413436, 0.06459948320413436, 0.06718346253229975, 0.06718346253229975, 0.09560723514211886, 0.10335917312661498, 0.11369509043927649, 0.11886304909560723, 0.13953488372093023, 0.1731266149870801, 0.3385012919896641, 0.9147286821705426], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Citrate_ly_lig.gap.json b/pfam_gap_rates/Citrate_ly_lig.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..46f3c703fdcc96b40831f752449348e47d5d2451
--- /dev/null
+++ b/pfam_gap_rates/Citrate_ly_lig.gap.json
@@ -0,0 +1 @@
+{"family": "Citrate_ly_lig", "n_seqs": 174, "length": 190, "gap_rates": [0.5229885057471264, 0.08620689655172414, 0.06896551724137931, 0.06321839080459771, 0.06321839080459771, 0.05747126436781609, 0.05747126436781609, 0.05747126436781609, 0.028735632183908046, 0.011494252873563218, 0.011494252873563218, 0.011494252873563218, 0.011494252873563218, 0.017241379310344827, 0.011494252873563218, 0.011494252873563218, 0.011494252873563218, 0.011494252873563218, 0.011494252873563218, 0.011494252873563218, 0.011494252873563218, 0.011494252873563218, 0.017241379310344827, 0.011494252873563218, 0.011494252873563218, 0.011494252873563218, 0.011494252873563218, 0.011494252873563218, 0.011494252873563218, 0.011494252873563218, 0.011494252873563218, 0.011494252873563218, 0.011494252873563218, 0.011494252873563218, 0.011494252873563218, 0.011494252873563218, 0.011494252873563218, 0.011494252873563218, 0.005747126436781609, 0.005747126436781609, 0.005747126436781609, 0.005747126436781609, 0.005747126436781609, 0.005747126436781609, 0.005747126436781609, 0.005747126436781609, 0.005747126436781609, 0.005747126436781609, 0.005747126436781609, 0.005747126436781609, 0.005747126436781609, 0.005747126436781609, 0.005747126436781609, 0.011494252873563218, 0.011494252873563218, 0.011494252873563218, 0.011494252873563218, 0.017241379310344827, 0.022988505747126436, 0.022988505747126436, 0.028735632183908046, 0.028735632183908046, 0.040229885057471264, 0.040229885057471264, 0.04597701149425287, 0.05172413793103448, 0.05172413793103448, 0.05172413793103448, 0.05172413793103448, 0.05172413793103448, 0.05172413793103448, 0.05172413793103448, 0.05172413793103448, 0.05172413793103448, 0.05172413793103448, 0.05172413793103448, 0.05172413793103448, 0.05172413793103448, 0.05172413793103448, 0.05172413793103448, 0.05172413793103448, 0.05172413793103448, 0.05747126436781609, 0.05747126436781609, 0.9310344827586207, 0.9310344827586207, 0.05747126436781609, 0.06896551724137931, 0.07471264367816093, 0.09770114942528736, 0.05747126436781609, 0.06896551724137931, 0.05747126436781609, 0.05747126436781609, 0.05747126436781609, 0.05747126436781609, 0.05747126436781609, 0.05747126436781609, 0.05747126436781609, 0.05747126436781609, 0.05747126436781609, 0.05747126436781609, 0.19540229885057472, 0.05747126436781609, 0.05747126436781609, 0.05747126436781609, 0.06321839080459771, 0.06321839080459771, 0.06321839080459771, 0.06321839080459771, 0.06321839080459771, 0.06321839080459771, 0.06321839080459771, 0.06321839080459771, 0.06321839080459771, 0.06321839080459771, 0.06321839080459771, 0.06321839080459771, 0.06896551724137931, 0.06896551724137931, 0.06896551724137931, 0.06896551724137931, 0.06896551724137931, 0.06896551724137931, 0.06896551724137931, 0.06896551724137931, 0.06896551724137931, 0.06896551724137931, 0.06896551724137931, 0.06896551724137931, 0.06321839080459771, 0.06321839080459771, 0.06321839080459771, 0.06321839080459771, 0.06321839080459771, 0.06321839080459771, 0.06321839080459771, 0.06321839080459771, 0.2988505747126437, 0.8850574712643678, 0.8908045977011494, 0.9022988505747126, 0.8908045977011494, 0.8793103448275862, 0.07471264367816093, 0.06896551724137931, 0.06321839080459771, 0.06321839080459771, 0.06321839080459771, 0.06321839080459771, 0.06321839080459771, 0.06321839080459771, 0.06321839080459771, 0.8793103448275862, 0.06321839080459771, 0.06896551724137931, 0.07471264367816093, 0.07471264367816093, 0.07471264367816093, 0.06896551724137931, 0.06896551724137931, 0.06321839080459771, 0.06321839080459771, 0.06321839080459771, 0.06321839080459771, 0.06321839080459771, 0.06321839080459771, 0.06321839080459771, 0.06321839080459771, 0.06321839080459771, 0.06321839080459771, 0.06321839080459771, 0.06321839080459771, 0.06896551724137931, 0.06321839080459771, 0.06896551724137931, 0.06896551724137931, 0.06896551724137931, 0.06896551724137931, 0.06896551724137931, 0.06896551724137931, 0.06896551724137931, 0.06896551724137931, 0.06896551724137931, 0.07471264367816093, 0.07471264367816093, 0.08620689655172414, 0.08620689655172414, 0.10919540229885058, 0.15517241379310345], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Citrate_synt.gap.json b/pfam_gap_rates/Citrate_synt.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..27543e64b721d0edda2153ce96f43b378a7f622b
--- /dev/null
+++ b/pfam_gap_rates/Citrate_synt.gap.json
@@ -0,0 +1 @@
+{"family": "Citrate_synt", "n_seqs": 3644, "length": 434, "gap_rates": [0.44127332601536773, 0.36086717892425907, 0.2521953896816685, 0.22667398463227223, 0.2239297475301866, 0.22091108671789242, 0.2145993413830955, 0.20911086717892427, 0.20115257958287597, 0.1951152579582876, 0.19401756311745336, 0.19319429198682767, 0.19319429198682767, 0.19264544456641053, 0.19209659714599342, 0.9344127332601537, 0.9363336992316136, 0.9415477497255763, 0.9366081229418222, 0.936059275521405, 0.9341383095499451, 0.2845773874862788, 0.3065312843029638, 0.2774423710208562, 0.26262349066959384, 0.9154774972557629, 0.9163007683863886, 0.9163007683863886, 0.9154774972557629, 0.3158616904500549, 0.19017563117453348, 0.8446761800219539, 0.1893523600439078, 0.1893523600439078, 0.18907793633369924, 0.18907793633369924, 0.18880351262349068, 0.1885290889132821, 0.18880351262349068, 0.1885290889132821, 0.18825466520307355, 0.18825466520307355, 0.2845773874862788, 0.187980241492865, 0.7722283205268935, 0.7733260153677278, 0.8614160263446762, 0.8699231613611416, 0.9017563117453348, 0.8633369923161361, 0.7914379802414928, 0.7725027442371021, 0.7711306256860593, 0.752469813391877, 0.22008781558726673, 0.1885290889132821, 0.187980241492865, 0.187980241492865, 0.18743139407244785, 0.18688254665203075, 0.18660812294182216, 0.1863336992316136, 0.18605927552140505, 0.18605927552140505, 0.18551042810098792, 0.18523600439077936, 0.19154774972557628, 0.19127332601536773, 0.19099890230515917, 0.19099890230515917, 0.19319429198682767, 0.19538968166849616, 0.2044456641053787, 0.21130625686059276, 0.20472008781558726, 0.20005488474204172, 0.20060373216245883, 0.20279912184412732, 0.20417124039517015, 0.20389681668496157, 0.2044456641053787, 0.2058177826564215, 0.2058177826564215, 0.2066410537870472, 0.2058177826564215, 0.2066410537870472, 0.20773874862788144, 0.2335345773874863, 0.2159714599341383, 0.22228320526893525, 0.21899012074643248, 0.22008781558726673, 0.21734357848518113, 0.21432491767288694, 0.22502744237102085, 0.21816684961580682, 0.21350164654226125, 0.21158068057080132, 0.20773874862788144, 0.900384193194292, 0.21432491767288694, 0.21350164654226125, 0.21405049396267836, 0.887211855104281, 0.267563117453348, 0.22639956092206368, 0.2296926454445664, 0.26125137211855104, 0.2486278814489572, 0.20636663007683864, 0.2058177826564215, 0.2074643249176729, 0.20691547749725575, 0.20636663007683864, 0.20554335894621295, 0.20554335894621295, 0.2058177826564215, 0.2060922063666301, 0.20554335894621295, 0.21075740944017562, 0.21295279912184412, 0.21871569703622393, 0.21761800219538968, 0.22749725576289792, 0.2519209659714599, 0.40175631174533477, 0.6964873765093305, 0.8334248079034029, 0.8444017563117453, 0.9420965971459934, 0.8413830954994511, 0.710482985729967, 0.6561470911086718, 0.4239846322722283, 0.33424807903402853, 0.3024149286498353, 0.2823819978046103, 0.2752469813391877, 0.265642151481888, 0.927277716794731, 0.3229967069154775, 0.27936333699231614, 0.21844127332601537, 0.24698133918770582, 0.2283205268935236, 0.24506037321624588, 0.26207464324917673, 0.4950603732162459, 0.4341383095499451, 0.4031284302963776, 0.3589462129527991, 0.21844127332601537, 0.21624588364434688, 0.21624588364434688, 0.21405049396267836, 0.2088364434687157, 0.2058177826564215, 0.20472008781558726, 0.20417124039517015, 0.20279912184412732, 0.20279912184412732, 0.21432491767288694, 0.21212952799121845, 0.21020856201975852, 0.20773874862788144, 0.20636663007683864, 0.2044456641053787, 0.20279912184412732, 0.203622392974753, 0.895993413830955, 0.9034028540065862, 0.8710208562019759, 0.2137760702524698, 0.47804610318331503, 0.21432491767288694, 0.21212952799121845, 0.5290889132821076, 0.20965971459934138, 0.9377058177826564, 0.9195938529088913, 0.2022502744237102, 0.19676180021953896, 0.9157519209659715, 0.20142700329308452, 0.19758507135016465, 0.18413830954994512, 0.18029637760702524, 0.1800219538968167, 0.17974753018660813, 0.179198682766191, 0.17892425905598244, 0.1756311745334797, 0.17261251372118552, 0.1706915477497256, 0.16931942919868276, 0.16657519209659716, 0.27497255762897915, 0.17316136114160263, 0.6997804610318331, 0.7052689352360044, 0.7093852908891328, 0.7017014270032931, 0.5971459934138309, 0.2829308452250274, 0.17261251372118552, 0.16931942919868276, 0.13858397365532382, 0.1243139407244786, 0.10373216245883644, 0.08150384193194292, 0.07189901207464325, 0.07052689352360043, 0.06970362239297476, 0.06888035126234907, 0.06888035126234907, 0.06942919868276619, 0.06888035126234907, 0.06888035126234907, 0.06750823271130625, 0.06750823271130625, 0.06778265642151482, 0.06805708013172337, 0.06750823271130625, 0.06750823271130625, 0.06778265642151482, 0.06778265642151482, 0.723655323819978, 0.06860592755214051, 0.06860592755214051, 0.06888035126234907, 0.06888035126234907, 0.06860592755214051, 0.06833150384193194, 0.06833150384193194, 0.06833150384193194, 0.06888035126234907, 0.06860592755214051, 0.06970362239297476, 0.06970362239297476, 0.06942919868276619, 0.06915477497255763, 0.06942919868276619, 0.06942919868276619, 0.06915477497255763, 0.06970362239297476, 0.06970362239297476, 0.06915477497255763, 0.06915477497255763, 0.06888035126234907, 0.06888035126234907, 0.06833150384193194, 0.06778265642151482, 0.06915477497255763, 0.06997804610318331, 0.06942919868276619, 0.18551042810098792, 0.06860592755214051, 0.0672338090010977, 0.06668496158068057, 0.06695938529088913, 0.0672338090010977, 0.0672338090010977, 0.06888035126234907, 0.06750823271130625, 0.06750823271130625, 0.06805708013172337, 0.06833150384193194, 0.06778265642151482, 0.06778265642151482, 0.06586169045005488, 0.06531284302963776, 0.06586169045005488, 0.06586169045005488, 0.06586169045005488, 0.34906695938529086, 0.06778265642151482, 0.06860592755214051, 0.12239297475301866, 0.5101536772777168, 0.7096597145993414, 0.7296926454445664, 0.741218441273326, 0.9456641053787047, 0.75, 0.7365532381997805, 0.7129527991218442, 0.6613611416026345, 0.06888035126234907, 0.06778265642151482, 0.06750823271130625, 0.066410537870472, 0.06613611416026345, 0.06531284302963776, 0.06531284302963776, 0.06476399560922064, 0.06476399560922064, 0.06695938529088913, 0.06531284302963776, 0.07985729967069155, 0.36525795828759605, 0.3572996706915478, 0.9025795828759605, 0.9075192096597146, 0.9034028540065862, 0.6899012074643249, 0.06586169045005488, 0.06613611416026345, 0.06531284302963776, 0.06394072447859495, 0.06421514818880351, 0.06531284302963776, 0.06531284302963776, 0.06476399560922064, 0.06448957189901207, 0.06476399560922064, 0.06448957189901207, 0.07903402854006586, 0.9495060373216246, 0.06558726673984633, 0.06997804610318331, 0.06421514818880351, 0.06421514818880351, 0.06448957189901207, 0.06366630076838639, 0.0628430296377607, 0.06394072447859495, 0.06394072447859495, 0.06366630076838639, 0.06339187705817782, 0.06394072447859495, 0.06394072447859495, 0.07409440175631174, 0.07354555433589462, 0.09083424807903402, 0.10976948408342481, 0.14736553238199782, 0.3726673984632272, 0.884742041712404, 0.7428649835345774, 0.3345225027442371, 0.29006586169045007, 0.1141602634467618, 0.10043907793633369, 0.07766190998902305, 0.070801317233809, 0.06942919868276619, 0.06750823271130625, 0.06778265642151482, 0.06668496158068057, 0.06613611416026345, 0.06668496158068057, 0.06613611416026345, 0.06531284302963776, 0.06476399560922064, 0.06448957189901207, 0.06476399560922064, 0.06476399560922064, 0.06476399560922064, 0.34989023051591656, 0.34577387486278816, 0.34796926454445665, 0.38062568605927555, 0.31311745334796925, 0.09549945115257959, 0.9176728869374314, 0.7220087815587267, 0.6652030735455543, 0.07464324917672886, 0.07354555433589462, 0.07189901207464325, 0.06668496158068057, 0.066410537870472, 0.06613611416026345, 0.06668496158068057, 0.066410537870472, 0.06586169045005488, 0.06586169045005488, 0.06888035126234907, 0.0672338090010977, 0.06668496158068057, 0.06778265642151482, 0.06833150384193194, 0.06942919868276619, 0.070801317233809, 0.07025246981339188, 0.07025246981339188, 0.070801317233809, 0.070801317233809, 0.07135016465422613, 0.09302963776070253, 0.07217343578485182, 0.9127332601536773, 0.9333150384193194, 0.935510428100988, 0.936059275521405, 0.9431942919868277, 0.935510428100988, 0.9349615806805708, 0.9333150384193194, 0.8301317233809001, 0.07189901207464325, 0.07244785949506037, 0.07272228320526894, 0.07272228320526894, 0.07272228320526894, 0.07354555433589462, 0.07381997804610319, 0.07409440175631174, 0.07491767288693743, 0.075192096597146, 0.075192096597146, 0.075192096597146, 0.075192096597146, 0.07574094401756312, 0.07628979143798024, 0.07628979143798024, 0.07683863885839737, 0.07683863885839737, 0.07711306256860592, 0.08205268935236004, 0.0809549945115258, 0.8899560922063666, 0.5266190998902305, 0.09549945115257959, 0.11169045005488475, 0.867178924259056, 0.8556531284302964, 0.15010976948408342, 0.16959385290889134, 0.17261251372118552, 0.18441273326015367, 0.19154774972557628, 0.20938529088913282, 0.36443468715697036], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Clathrin_H_link.gap.json b/pfam_gap_rates/Clathrin_H_link.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b5de2eb0e5b397c67b81a8bd0d24b188c6ed1333
--- /dev/null
+++ b/pfam_gap_rates/Clathrin_H_link.gap.json
@@ -0,0 +1 @@
+{"family": "Clathrin_H_link", "n_seqs": 406, "length": 66, "gap_rates": [0.12807881773399016, 0.09113300492610837, 0.09113300492610837, 0.08620689655172414, 0.07389162561576355, 0.07142857142857142, 0.0665024630541872, 0.06403940886699508, 0.024630541871921183, 0.019704433497536946, 0.017241379310344827, 0.017241379310344827, 0.017241379310344827, 0.017241379310344827, 0.017241379310344827, 0.017241379310344827, 0.017241379310344827, 0.017241379310344827, 0.017241379310344827, 0.017241379310344827, 0.014778325123152709, 0.014778325123152709, 0.014778325123152709, 0.014778325123152709, 0.014778325123152709, 0.014778325123152709, 0.014778325123152709, 0.014778325123152709, 0.014778325123152709, 0.014778325123152709, 0.014778325123152709, 0.014778325123152709, 0.009852216748768473, 0.009852216748768473, 0.0812807881773399, 0.07389162561576355, 0.009852216748768473, 0.009852216748768473, 0.009852216748768473, 0.009852216748768473, 0.007389162561576354, 0.009852216748768473, 0.009852216748768473, 0.009852216748768473, 0.009852216748768473, 0.009852216748768473, 0.009852216748768473, 0.012315270935960592, 0.012315270935960592, 0.012315270935960592, 0.034482758620689655, 0.027093596059113302, 0.024630541871921183, 0.014778325123152709, 0.03201970443349754, 0.022167487684729065, 0.019704433497536946, 0.014778325123152709, 0.014778325123152709, 0.014778325123152709, 0.014778325123152709, 0.014778325123152709, 0.017241379310344827, 0.022167487684729065, 0.046798029556650245, 0.10344827586206896], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Clathrin_propel.gap.json b/pfam_gap_rates/Clathrin_propel.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..8ec02b1a2679553a9137e629cafb431158b7ac3f
--- /dev/null
+++ b/pfam_gap_rates/Clathrin_propel.gap.json
@@ -0,0 +1 @@
+{"family": "Clathrin_propel", "n_seqs": 783, "length": 44, "gap_rates": [0.4444444444444444, 0.2771392081736909, 0.20434227330779056, 0.19157088122605365, 0.09195402298850575, 0.01532567049808429, 0.007662835249042145, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.5287356321839081, 0.8199233716475096, 0.8684546615581098, 0.8697318007662835, 0.8492975734355045, 0.6091954022988506, 0.5159642401021711, 0.18773946360153257, 0.28991060025542786, 0.002554278416347382, 0.0038314176245210726, 0.0038314176245210726, 0.002554278416347382, 0.002554278416347382, 0.006385696040868455, 0.006385696040868455, 0.006385696040868455, 0.008939974457215836, 0.05747126436781609, 0.16219667943805874], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Coat_F.gap.json b/pfam_gap_rates/Coat_F.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c15676ba020a596aee27814fddf3b1c63f77bffd
--- /dev/null
+++ b/pfam_gap_rates/Coat_F.gap.json
@@ -0,0 +1 @@
+{"family": "Coat_F", "n_seqs": 620, "length": 64, "gap_rates": [0.2661290322580645, 0.08064516129032258, 0.06612903225806452, 0.0532258064516129, 0.02258064516129032, 0.008064516129032258, 0.004838709677419355, 0.0032258064516129032, 0.0032258064516129032, 0.0016129032258064516, 0.0016129032258064516, 0.0016129032258064516, 0.0016129032258064516, 0.0016129032258064516, 0.0016129032258064516, 0.0016129032258064516, 0.0016129032258064516, 0.0016129032258064516, 0.0016129032258064516, 0.0016129032258064516, 0.0016129032258064516, 0.0016129032258064516, 0.0016129032258064516, 0.0016129032258064516, 0.0016129032258064516, 0.0016129032258064516, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0016129032258064516, 0.0016129032258064516, 0.0016129032258064516, 0.0016129032258064516, 0.0016129032258064516, 0.0016129032258064516, 0.0016129032258064516, 0.0016129032258064516, 0.0032258064516129032, 0.004838709677419355, 0.004838709677419355, 0.004838709677419355, 0.0064516129032258064, 0.0064516129032258064, 0.00967741935483871, 0.01129032258064516, 0.02903225806451613, 0.03064516129032258, 0.03064516129032258, 0.03387096774193549, 0.037096774193548385, 0.05161290322580645, 0.07903225806451612, 0.8080645161290323, 0.12580645161290321, 0.23387096774193547, 0.6870967741935484], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/CobA_CobO_BtuR.gap.json b/pfam_gap_rates/CobA_CobO_BtuR.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..98ef58dfc6845d53b22202d4da16c61b90351fbd
--- /dev/null
+++ b/pfam_gap_rates/CobA_CobO_BtuR.gap.json
@@ -0,0 +1 @@
+{"family": "CobA_CobO_BtuR", "n_seqs": 1240, "length": 197, "gap_rates": [0.8201612903225807, 0.29838709677419356, 0.1588709677419355, 0.0846774193548387, 0.035483870967741936, 0.03306451612903226, 0.03225806451612903, 0.03064516129032258, 0.03064516129032258, 0.031451612903225803, 0.03064516129032258, 0.03064516129032258, 0.03064516129032258, 0.03064516129032258, 0.03064516129032258, 0.03064516129032258, 0.03064516129032258, 0.03064516129032258, 0.029838709677419355, 0.02903225806451613, 0.02903225806451613, 0.025806451612903226, 0.025, 0.025, 0.025806451612903226, 0.025806451612903226, 0.024193548387096774, 0.024193548387096774, 0.024193548387096774, 0.024193548387096774, 0.9370967741935484, 0.9370967741935484, 0.9370967741935484, 0.9370967741935484, 0.9370967741935484, 0.9370967741935484, 0.024193548387096774, 0.024193548387096774, 0.024193548387096774, 0.02338709677419355, 0.021774193548387097, 0.020967741935483872, 0.020967741935483872, 0.020967741935483872, 0.01935483870967742, 0.01935483870967742, 0.020161290322580645, 0.7790322580645161, 0.2661290322580645, 0.041935483870967745, 0.029838709677419355, 0.025, 0.020967741935483872, 0.020967741935483872, 0.020967741935483872, 0.021774193548387097, 0.020967741935483872, 0.020161290322580645, 0.021774193548387097, 0.020967741935483872, 0.020967741935483872, 0.4491935483870968, 0.8153225806451613, 0.8443548387096774, 0.9266129032258065, 0.9346774193548387, 0.9346774193548387, 0.9306451612903226, 0.9040322580645161, 0.8185483870967742, 0.7685483870967742, 0.17661290322580644, 0.01935483870967742, 0.9491935483870968, 0.020161290322580645, 0.01935483870967742, 0.01935483870967742, 0.018548387096774192, 0.020161290322580645, 0.020967741935483872, 0.018548387096774192, 0.9467741935483871, 0.8443548387096774, 0.567741935483871, 0.027419354838709678, 0.02661290322580645, 0.02661290322580645, 0.02338709677419355, 0.8830645161290323, 0.6911290322580645, 0.6, 0.06532258064516129, 0.029838709677419355, 0.035483870967741936, 0.07258064516129033, 0.03306451612903226, 0.020967741935483872, 0.016935483870967744, 0.016935483870967744, 0.016129032258064516, 0.016129032258064516, 0.016129032258064516, 0.016935483870967744, 0.016935483870967744, 0.016935483870967744, 0.016935483870967744, 0.016935483870967744, 0.016935483870967744, 0.016935483870967744, 0.016129032258064516, 0.016129032258064516, 0.016129032258064516, 0.01532258064516129, 0.01532258064516129, 0.018548387096774192, 0.028225806451612902, 0.03225806451612903, 0.0467741935483871, 0.035483870967741936, 0.014516129032258065, 0.013709677419354839, 0.013709677419354839, 0.013709677419354839, 0.013709677419354839, 0.013709677419354839, 0.013709677419354839, 0.013709677419354839, 0.012903225806451613, 0.012903225806451613, 0.012903225806451613, 0.012903225806451613, 0.012903225806451613, 0.013709677419354839, 0.012903225806451613, 0.012096774193548387, 0.01129032258064516, 0.01129032258064516, 0.012096774193548387, 0.012096774193548387, 0.012096774193548387, 0.012096774193548387, 0.01129032258064516, 0.01129032258064516, 0.010483870967741936, 0.010483870967741936, 0.010483870967741936, 0.010483870967741936, 0.9225806451612903, 0.010483870967741936, 0.04032258064516129, 0.014516129032258065, 0.012096774193548387, 0.012903225806451613, 0.012903225806451613, 0.012096774193548387, 0.010483870967741936, 0.010483870967741936, 0.00967741935483871, 0.00967741935483871, 0.00967741935483871, 0.00967741935483871, 0.008870967741935484, 0.008870967741935484, 0.00967741935483871, 0.010483870967741936, 0.010483870967741936, 0.010483870967741936, 0.010483870967741936, 0.010483870967741936, 0.00967741935483871, 0.00967741935483871, 0.010483870967741936, 0.010483870967741936, 0.010483870967741936, 0.010483870967741936, 0.010483870967741936, 0.012903225806451613, 0.014516129032258065, 0.028225806451612902, 0.04112903225806452, 0.05241935483870968, 0.0846774193548387, 0.08870967741935484, 0.09274193548387097, 0.9201612903225806, 0.09435483870967742, 0.09596774193548387, 0.10241935483870968, 0.10483870967741936, 0.1064516129032258, 0.10403225806451613, 0.1032258064516129, 0.10161290322580645, 0.10241935483870968, 0.10564516129032259, 0.11048387096774194, 0.2870967741935484], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/CopC.gap.json b/pfam_gap_rates/CopC.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a1e790119526041aa873b9958a91946f458a18da
--- /dev/null
+++ b/pfam_gap_rates/CopC.gap.json
@@ -0,0 +1 @@
+{"family": "CopC", "n_seqs": 598, "length": 110, "gap_rates": [0.07692307692307693, 0.07525083612040134, 0.048494983277591976, 0.026755852842809364, 0.023411371237458192, 0.021739130434782608, 0.020066889632107024, 0.01839464882943144, 0.01839464882943144, 0.01839464882943144, 0.016722408026755852, 0.016722408026755852, 0.016722408026755852, 0.016722408026755852, 0.015050167224080268, 0.14046822742474915, 0.010033444816053512, 0.010033444816053512, 0.010033444816053512, 0.010033444816053512, 0.010033444816053512, 0.010033444816053512, 0.008361204013377926, 0.008361204013377926, 0.008361204013377926, 0.008361204013377926, 0.008361204013377926, 0.008361204013377926, 0.010033444816053512, 0.008361204013377926, 0.008361204013377926, 0.006688963210702341, 0.24581939799331104, 0.9080267558528428, 0.8896321070234113, 0.15217391304347827, 0.006688963210702341, 0.013377926421404682, 0.013377926421404682, 0.011705685618729096, 0.010033444816053512, 0.010033444816053512, 0.013377926421404682, 0.013377926421404682, 0.011705685618729096, 0.011705685618729096, 0.10869565217391304, 0.038461538461538464, 0.4531772575250836, 0.6688963210702341, 0.81438127090301, 0.9180602006688964, 0.9331103678929766, 0.9481605351170569, 0.9364548494983278, 0.9230769230769231, 0.903010033444816, 0.7909698996655519, 0.5551839464882943, 0.33612040133779264, 0.13712374581939799, 0.23244147157190637, 0.2491638795986622, 0.09698996655518395, 0.07023411371237458, 0.033444816053511704, 0.033444816053511704, 0.03511705685618729, 0.04013377926421405, 0.05351170568561873, 0.04013377926421405, 0.021739130434782608, 0.015050167224080268, 0.008361204013377926, 0.008361204013377926, 0.010033444816053512, 0.02508361204013378, 0.03678929765886288, 0.038461538461538464, 0.939799331103679, 0.5484949832775919, 0.21070234113712374, 0.1956521739130435, 0.18896321070234115, 0.008361204013377926, 0.006688963210702341, 0.006688963210702341, 0.005016722408026756, 0.005016722408026756, 0.005016722408026756, 0.005016722408026756, 0.010033444816053512, 0.010033444816053512, 0.011705685618729096, 0.011705685618729096, 0.01839464882943144, 0.013377926421404682, 0.013377926421404682, 0.016722408026755852, 0.016722408026755852, 0.016722408026755852, 0.016722408026755852, 0.016722408026755852, 0.016722408026755852, 0.016722408026755852, 0.01839464882943144, 0.023411371237458192, 0.026755852842809364, 0.048494983277591976, 0.2525083612040134], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/CreA.gap.json b/pfam_gap_rates/CreA.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ce954daa5445d22d953221eec3d3e0a9b0e40c96
--- /dev/null
+++ b/pfam_gap_rates/CreA.gap.json
@@ -0,0 +1 @@
+{"family": "CreA", "n_seqs": 260, "length": 141, "gap_rates": [0.15384615384615385, 0.13076923076923078, 0.10384615384615385, 0.1, 0.1, 0.1, 0.09615384615384616, 0.24615384615384617, 0.4076923076923077, 0.4, 0.17692307692307693, 0.16538461538461538, 0.057692307692307696, 0.011538461538461539, 0.011538461538461539, 0.011538461538461539, 0.011538461538461539, 0.011538461538461539, 0.011538461538461539, 0.011538461538461539, 0.011538461538461539, 0.011538461538461539, 0.011538461538461539, 0.011538461538461539, 0.011538461538461539, 0.011538461538461539, 0.011538461538461539, 0.011538461538461539, 0.011538461538461539, 0.011538461538461539, 0.011538461538461539, 0.011538461538461539, 0.011538461538461539, 0.011538461538461539, 0.011538461538461539, 0.011538461538461539, 0.011538461538461539, 0.011538461538461539, 0.011538461538461539, 0.011538461538461539, 0.011538461538461539, 0.011538461538461539, 0.7653846153846153, 0.18076923076923077, 0.17692307692307693, 0.17307692307692307, 0.17307692307692307, 0.17692307692307693, 0.823076923076923, 0.17692307692307693, 0.015384615384615385, 0.015384615384615385, 0.015384615384615385, 0.015384615384615385, 0.015384615384615385, 0.015384615384615385, 0.015384615384615385, 0.019230769230769232, 0.019230769230769232, 0.019230769230769232, 0.019230769230769232, 0.019230769230769232, 0.019230769230769232, 0.019230769230769232, 0.019230769230769232, 0.019230769230769232, 0.019230769230769232, 0.019230769230769232, 0.019230769230769232, 0.17692307692307693, 0.8269230769230769, 0.8115384615384615, 0.015384615384615385, 0.015384615384615385, 0.019230769230769232, 0.015384615384615385, 0.5, 0.47692307692307695, 0.8769230769230769, 0.45, 0.019230769230769232, 0.015384615384615385, 0.015384615384615385, 0.011538461538461539, 0.011538461538461539, 0.011538461538461539, 0.011538461538461539, 0.015384615384615385, 0.011538461538461539, 0.011538461538461539, 0.011538461538461539, 0.015384615384615385, 0.007692307692307693, 0.007692307692307693, 0.007692307692307693, 0.007692307692307693, 0.007692307692307693, 0.007692307692307693, 0.007692307692307693, 0.011538461538461539, 0.011538461538461539, 0.011538461538461539, 0.011538461538461539, 0.011538461538461539, 0.011538461538461539, 0.011538461538461539, 0.011538461538461539, 0.011538461538461539, 0.011538461538461539, 0.011538461538461539, 0.011538461538461539, 0.011538461538461539, 0.011538461538461539, 0.011538461538461539, 0.011538461538461539, 0.011538461538461539, 0.011538461538461539, 0.011538461538461539, 0.011538461538461539, 0.011538461538461539, 0.019230769230769232, 0.9461538461538461, 0.9461538461538461, 0.9461538461538461, 0.9461538461538461, 0.9461538461538461, 0.015384615384615385, 0.019230769230769232, 0.023076923076923078, 0.023076923076923078, 0.03076923076923077, 0.03461538461538462, 0.03461538461538462, 0.038461538461538464, 0.038461538461538464, 0.038461538461538464, 0.04230769230769231, 0.05384615384615385, 0.12307692307692308, 0.35, 0.6846153846153846], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Creatinase_N.gap.json b/pfam_gap_rates/Creatinase_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..222720e85159ba152bbfc19c1ceac65aa8b32a11
--- /dev/null
+++ b/pfam_gap_rates/Creatinase_N.gap.json
@@ -0,0 +1 @@
+{"family": "Creatinase_N", "n_seqs": 3484, "length": 172, "gap_rates": [0.3447187141216992, 0.2126865671641791, 0.16130884041331803, 0.13203214695752008, 0.10849598163030999, 0.1013203214695752, 0.09672789896670493, 0.0947187141216992, 0.07634902411021814, 0.07548794489092997, 0.07405281285878301, 0.06630309988518944, 0.05309988518943743, 0.0439150401836969, 0.03903559127439724, 0.035304247990815156, 0.03013777267508611, 0.027841561423650976, 0.026693455797933408, 0.02439724454649828, 0.02095292766934558, 0.01894374282433984, 0.6727898966704937, 0.6770952927669346, 0.6946039035591275, 0.7003444316877153, 0.702353616532721, 0.7060849598163031, 0.703788748564868, 0.7017795637198623, 0.698622273249139, 0.6868541905855339, 0.6733639494833524, 0.6725028702640643, 0.014638346727898967, 0.012629161882893225, 0.011481056257175661, 0.00947187141216992, 0.00947187141216992, 0.007749712973593571, 0.007462686567164179, 0.007462686567164179, 0.008036739380022962, 0.6024684270952928, 0.9095866819747417, 0.9423076923076923, 0.9187715269804823, 0.8909299655568312, 0.5901262916188289, 0.5797933409873708, 0.04420206659012629, 0.014638346727898967, 0.008610792192881744, 0.008323765786452353, 0.008323765786452353, 0.008036739380022962, 0.007175660160734788, 0.010045924225028703, 0.5929965556831228, 0.025832376578645237, 0.008036739380022962, 0.010907003444316877, 0.010332950631458095, 0.010619977037887486, 0.027554535017221583, 0.6274397244546498, 0.010619977037887486, 0.007462686567164179, 0.007749712973593571, 0.008036739380022962, 0.00947187141216992, 0.6394948335246843, 0.03989667049368542, 0.014638346727898967, 0.012055109070034443, 0.012916188289322618, 0.012342135476463834, 0.012055109070034443, 0.013777267508610792, 0.014925373134328358, 0.015499425947187142, 0.01750861079219288, 0.768369690011481, 0.8602181400688863, 0.9181974741676234, 0.8455797933409873, 0.6880022962112514, 0.38260619977037885, 0.09873708381171067, 0.05109070034443169, 0.0404707233065442, 0.03128587830080368, 0.03731343283582089, 0.03817451205510907, 0.056544202066590124, 0.04764638346727899, 0.07204362801377727, 0.1549942594718714, 0.6030424799081515, 0.8326636050516647, 0.8917910447761194, 0.9115958668197475, 0.914179104477612, 0.9035591274397244, 0.855625717566016, 0.6415040183696901, 0.465556831228473, 0.3481630309988519, 0.09672789896670493, 0.07835820895522388, 0.025545350172215844, 0.020378874856486796, 0.01894374282433984, 0.01951779563719862, 0.020091848450057407, 0.020091848450057407, 0.021526980482204364, 0.022388059701492536, 0.03071182548794489, 0.12112514351320322, 0.11194029850746269, 0.17766934557979333, 0.14724454649827784, 0.8329506314580941, 0.9374282433983927, 0.7597588978185993, 0.03157290470723306, 0.03013777267508611, 0.030424799081515498, 0.031859931113662456, 0.03157290470723306, 0.033582089552238806, 0.035878300803673935, 0.04621125143513203, 0.1552812858783008, 0.9150401836969001, 0.9006888633754305, 0.10275545350172216, 0.05855338691159587, 0.05309988518943743, 0.053386911595866816, 0.055970149253731345, 0.06142365097588978, 0.058266360505166474, 0.05855338691159587, 0.06113662456946039, 0.07146957520091848, 0.07032146957520091, 0.0774971297359357, 0.10533869115958668, 0.9124569460390356, 0.8874856486796785, 0.22502870264064295, 0.18427095292766935, 0.17996555683122847, 0.9316877152698049, 0.8920780711825488, 0.1857060849598163, 0.1994833524684271, 0.2198622273249139, 0.23765786452353616, 0.24971297359357061, 0.2669345579793341, 0.2956371986222732, 0.3510332950631458, 0.3547646383467279, 0.36452353616532723, 0.378300803673938, 0.39552238805970147, 0.4161882893226177, 0.46383467278989665, 0.585820895522388], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/CtsR.gap.json b/pfam_gap_rates/CtsR.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a798a3db42406a5a962ccb8753d7118f3ca405fd
--- /dev/null
+++ b/pfam_gap_rates/CtsR.gap.json
@@ -0,0 +1 @@
+{"family": "CtsR", "n_seqs": 354, "length": 150, "gap_rates": [0.8954802259887006, 0.08757062146892655, 0.01977401129943503, 0.01694915254237288, 0.01694915254237288, 0.01694915254237288, 0.01694915254237288, 0.01694915254237288, 0.01694915254237288, 0.01694915254237288, 0.01694915254237288, 0.01694915254237288, 0.01694915254237288, 0.01694915254237288, 0.01694915254237288, 0.01694915254237288, 0.01694915254237288, 0.01694915254237288, 0.014124293785310734, 0.4124293785310734, 0.3022598870056497, 0.014124293785310734, 0.014124293785310734, 0.014124293785310734, 0.014124293785310734, 0.014124293785310734, 0.014124293785310734, 0.014124293785310734, 0.014124293785310734, 0.014124293785310734, 0.014124293785310734, 0.014124293785310734, 0.014124293785310734, 0.014124293785310734, 0.014124293785310734, 0.014124293785310734, 0.014124293785310734, 0.011299435028248588, 0.011299435028248588, 0.011299435028248588, 0.011299435028248588, 0.011299435028248588, 0.011299435028248588, 0.011299435028248588, 0.00847457627118644, 0.00847457627118644, 0.00847457627118644, 0.00847457627118644, 0.00847457627118644, 0.00847457627118644, 0.00847457627118644, 0.005649717514124294, 0.005649717514124294, 0.005649717514124294, 0.005649717514124294, 0.005649717514124294, 0.005649717514124294, 0.005649717514124294, 0.005649717514124294, 0.005649717514124294, 0.005649717514124294, 0.005649717514124294, 0.005649717514124294, 0.00847457627118644, 0.00847457627118644, 0.00847457627118644, 0.00847457627118644, 0.00847457627118644, 0.00847457627118644, 0.005649717514124294, 0.005649717514124294, 0.005649717514124294, 0.00847457627118644, 0.005649717514124294, 0.005649717514124294, 0.005649717514124294, 0.014124293785310734, 0.06497175141242938, 0.06779661016949153, 0.025423728813559324, 0.01977401129943503, 0.01977401129943503, 0.01977401129943503, 0.022598870056497175, 0.1016949152542373, 0.022598870056497175, 0.022598870056497175, 0.022598870056497175, 0.01977401129943503, 0.01977401129943503, 0.025423728813559324, 0.01977401129943503, 0.014124293785310734, 0.00847457627118644, 0.00847457627118644, 0.00847457627118644, 0.00847457627118644, 0.00847457627118644, 0.011299435028248588, 0.011299435028248588, 0.011299435028248588, 0.011299435028248588, 0.00847457627118644, 0.00847457627118644, 0.00847457627118644, 0.00847457627118644, 0.00847457627118644, 0.00847457627118644, 0.00847457627118644, 0.00847457627118644, 0.00847457627118644, 0.00847457627118644, 0.00847457627118644, 0.00847457627118644, 0.00847457627118644, 0.00847457627118644, 0.00847457627118644, 0.00847457627118644, 0.011299435028248588, 0.011299435028248588, 0.011299435028248588, 0.011299435028248588, 0.011299435028248588, 0.059322033898305086, 0.04519774011299435, 0.01977401129943503, 0.022598870056497175, 0.031073446327683617, 0.07062146892655367, 0.7372881355932204, 0.10451977401129943, 0.05649717514124294, 0.05084745762711865, 0.04519774011299435, 0.03672316384180791, 0.03954802259887006, 0.03954802259887006, 0.0423728813559322, 0.0480225988700565, 0.04519774011299435, 0.0480225988700565, 0.0480225988700565, 0.0480225988700565, 0.059322033898305086, 0.059322033898305086, 0.06779661016949153, 0.06779661016949153, 0.07627118644067797, 0.1864406779661017, 0.3870056497175141], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Cu-binding_MopE.gap.json b/pfam_gap_rates/Cu-binding_MopE.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c4ccbc5b80138c31d882a8376d7d3f9c0281c84b
--- /dev/null
+++ b/pfam_gap_rates/Cu-binding_MopE.gap.json
@@ -0,0 +1 @@
+{"family": "Cu-binding_MopE", "n_seqs": 920, "length": 32, "gap_rates": [0.41195652173913044, 0.40652173913043477, 0.4032608695652174, 0.40217391304347827, 0.40217391304347827, 0.3967391304347826, 0.39021739130434785, 0.3858695652173913, 0.3804347826086957, 0.3782608695652174, 0.36086956521739133, 0.33152173913043476, 0.2554347826086957, 0.10217391304347827, 0.058695652173913045, 0.9304347826086956, 0.05, 0.043478260869565216, 0.7369565217391304, 0.042391304347826085, 0.042391304347826085, 0.041304347826086954, 0.042391304347826085, 0.042391304347826085, 0.043478260869565216, 0.04565217391304348, 0.05652173913043478, 0.08804347826086957, 0.10869565217391304, 0.19021739130434784, 0.22391304347826088, 0.3978260869565217], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Cu-oxidase.gap.json b/pfam_gap_rates/Cu-oxidase.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c46052e1f22c7e9513ed2384f4c432e885b2fd17
--- /dev/null
+++ b/pfam_gap_rates/Cu-oxidase.gap.json
@@ -0,0 +1 @@
+{"family": "Cu-oxidase", "n_seqs": 3431, "length": 199, "gap_rates": [0.9157679976683183, 0.5939959195569805, 0.44185368697172833, 0.34363159428737977, 0.295832118915768, 0.2815505683474206, 0.27309822209268436, 0.26581171670067033, 0.264062955406587, 0.2628971145438648, 0.2628971145438648, 0.2611483532497814, 0.2655202564849898, 0.2637714951909064, 0.2628971145438648, 0.26056543281842026, 0.2591081317400175, 0.28125910813174004, 0.2792188866219761, 0.2760128242494899, 0.5263771495190906, 0.3261439813465462, 0.3165257942290877, 0.30574176624890703, 0.3066161468959487, 0.38851646750218594, 0.39084814922763045, 0.4027980180705334, 0.7047508015155931, 0.6674438939084815, 0.6283882250072865, 0.5832118915767998, 0.8854561352375401, 0.9440396385893326, 0.9271349460798601, 0.8577674147478869, 0.24336928009326728, 0.20722821334887787, 0.18332847566307198, 0.1603031186243078, 0.14689594870300204, 0.13319731856601574, 0.1241620518799184, 0.12066452929175167, 0.11979014864470999, 0.11891576799766831, 0.11920722821334888, 0.2561935295832119, 0.26610317691635094, 0.27455552317108717, 0.3191489361702128, 0.32585252113086566, 0.36840571262022737, 0.3614106674438939, 0.4348586417953949, 0.4430195278344506, 0.4357330224424366, 0.49460798600990963, 0.7350626639463713, 0.7589624016321772, 0.8026814339842612, 0.831244535120956, 0.8469833867677062, 0.8641795394928592, 0.8796269309239289, 0.8912853395511513, 0.8953657825706791, 0.900029146021568, 0.9081900320606238, 0.9137277761585544, 0.9195569804721655, 0.9271349460798601, 0.926552025648499, 0.9172252987467211, 0.9111046342174293, 0.9052754299038182, 0.8976974642961236, 0.8939084814922763, 0.8866219761002623, 0.8726318857475954, 0.855727193238123, 0.8423200233168172, 0.8143398426114835, 0.7779073156514136, 0.7461381521422326, 0.7076654036723987, 0.430195278344506, 0.44826581171670066, 0.29962110171961526, 0.22529874672107258, 0.09355872923345963, 0.0684931506849315, 0.0620810259399592, 0.06004080443019528, 0.05683474205770912, 0.05712620227338968, 0.05333721946954241, 0.05071407752841737, 0.05042261731273681, 0.05129699795977849, 0.042844651705042265, 0.034392305450306034, 0.03322646458758379, 0.02972894199941708, 0.02943748178373652, 0.02914602156805596, 0.02856310113669484, 0.027688720489653162, 0.027688720489653162, 0.027688720489653162, 0.027980180705333722, 0.0273972602739726, 0.030603322646458757, 0.0288545613523754, 0.0273972602739726, 0.0288545613523754, 0.025065578548528127, 0.025648498979889245, 0.025065578548528127, 0.025939959195569805, 0.026522879626930923, 0.026814339842611484, 0.9431652579422909, 0.04605071407752842, 0.03526668609734771, 0.034100845234625476, 0.032060623724861556, 0.03264354415622268, 0.031477703293500435, 0.0273972602739726, 0.026814339842611484, 0.025648498979889245, 0.024774118332847567, 0.024774118332847567, 0.026522879626930923, 0.026522879626930923, 0.8297872340425532, 0.026522879626930923, 0.031477703293500435, 0.0303118624307782, 0.02972894199941708, 0.030603322646458757, 0.03002040221509764, 0.02943748178373652, 0.031477703293500435, 0.030603322646458757, 0.030603322646458757, 0.030603322646458757, 0.031186243077819878, 0.032935004371903234, 0.03322646458758379, 0.03380938501894491, 0.034975225881667155, 0.03614106674438939, 0.036432526960069954, 0.03672398717575051, 0.040804430195278345, 0.047216554940250656, 0.05800058292043136, 0.07869425823375109, 0.7741183328475663, 0.2588166715243369, 0.9358787525502769, 0.9003206062372486, 0.16263480034975225, 0.13232293791897407, 0.13786068201690468, 0.1448557271932381, 0.14835324978140485, 0.14981055085980763, 0.15389099387933547, 0.15826289711454386, 0.3856018653453804, 0.8254153308073447, 0.8615563975517342, 0.6429612357913145, 0.43106965899154764, 0.4727484698338677, 0.471874089186826, 0.39143106965899155, 0.508306616146896, 0.3707373943456718, 0.35791314485572717, 0.35907898571844943, 0.3480034975225882, 0.3378023899737686, 0.33663654911104635, 0.3343048673856019, 0.32293791897406005, 0.3267269017779073, 0.33255610609151853, 0.33605362867968525, 0.34159137277761586, 0.34975225881667155, 0.36753133197318566, 0.3867677062081026, 0.4377732439522005, 0.5718449431652579, 0.8941999417079569], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Cupin_2.gap.json b/pfam_gap_rates/Cupin_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e8558826c0360ba4aee3d7bf81afc1e3ae3ffd7c
--- /dev/null
+++ b/pfam_gap_rates/Cupin_2.gap.json
@@ -0,0 +1 @@
+{"family": "Cupin_2", "n_seqs": 5000, "length": 79, "gap_rates": [0.6372, 0.4338, 0.3262, 0.2796, 0.2448, 0.2158, 0.1976, 0.1786, 0.8046, 0.1334, 0.1056, 0.0754, 0.0536, 0.0444, 0.0362, 0.9368, 0.0364, 0.0212, 0.0158, 0.0216, 0.5388, 0.9498, 0.0044, 0.0024, 0.0022, 0.0014, 0.0014, 0.0014, 0.0016, 0.0012, 0.0012, 0.0012, 0.001, 0.001, 0.0008, 0.8352, 0.0028, 0.0024, 0.9404, 0.0042, 0.002, 0.9192, 0.943, 0.87, 0.0028, 0.0004, 0.0002, 0.0002, 0.0002, 0.0006, 0.001, 0.0018, 0.0048, 0.0056, 0.01, 0.0026, 0.0036, 0.006, 0.0112, 0.0068, 0.0086, 0.0088, 0.0094, 0.0196, 0.0402, 0.058, 0.0848, 0.1044, 0.1902, 0.21, 0.9112, 0.2154, 0.2284, 0.2512, 0.2738, 0.3212, 0.4068, 0.5402, 0.8812], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/CusF_Ec.gap.json b/pfam_gap_rates/CusF_Ec.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..cb6c8a92966456da549fb42b20d2745c8f9f1be4
--- /dev/null
+++ b/pfam_gap_rates/CusF_Ec.gap.json
@@ -0,0 +1 @@
+{"family": "CusF_Ec", "n_seqs": 425, "length": 68, "gap_rates": [0.14352941176470588, 0.07529411764705882, 0.058823529411764705, 0.04941176470588235, 0.047058823529411764, 0.04470588235294118, 0.03764705882352941, 0.07294117647058823, 0.0611764705882353, 0.03529411764705882, 0.13647058823529412, 0.1223529411764706, 0.01411764705882353, 0.011764705882352941, 0.011764705882352941, 0.009411764705882352, 0.009411764705882352, 0.009411764705882352, 0.009411764705882352, 0.009411764705882352, 0.009411764705882352, 0.009411764705882352, 0.07529411764705882, 0.007058823529411765, 0.002352941176470588, 0.007058823529411765, 0.002352941176470588, 0.002352941176470588, 0.002352941176470588, 0.002352941176470588, 0.002352941176470588, 0.002352941176470588, 0.0, 0.0, 0.04, 0.05647058823529412, 0.004705882352941176, 0.009411764705882352, 0.002352941176470588, 0.002352941176470588, 0.002352941176470588, 0.002352941176470588, 0.002352941176470588, 0.002352941176470588, 0.002352941176470588, 0.002352941176470588, 0.004705882352941176, 0.004705882352941176, 0.007058823529411765, 0.007058823529411765, 0.007058823529411765, 0.007058823529411765, 0.009411764705882352, 0.01411764705882353, 0.01411764705882353, 0.01647058823529412, 0.03294117647058824, 0.10823529411764705, 0.11764705882352941, 0.5529411764705883, 0.07529411764705882, 0.07529411764705882, 0.07764705882352942, 0.08705882352941176, 0.10352941176470588, 0.14823529411764705, 0.26588235294117646, 0.7788235294117647], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Cyclin_N.gap.json b/pfam_gap_rates/Cyclin_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ca3a193ca0274a0966004ad21440f6d8083dfa94
--- /dev/null
+++ b/pfam_gap_rates/Cyclin_N.gap.json
@@ -0,0 +1 @@
+{"family": "Cyclin_N", "n_seqs": 5000, "length": 161, "gap_rates": [0.782, 0.7328, 0.7016, 0.6632, 0.6336, 0.6104, 0.5958, 0.5792, 0.5638, 0.5556, 0.5452, 0.5358, 0.5588, 0.5174, 0.5102, 0.4818, 0.4632, 0.4478, 0.4408, 0.431, 0.4276, 0.917, 0.4462, 0.419, 0.397, 0.9312, 0.3874, 0.3518, 0.3194, 0.3004, 0.2608, 0.2388, 0.2158, 0.203, 0.1876, 0.174, 0.1648, 0.1544, 0.1474, 0.1218, 0.1138, 0.107, 0.0984, 0.0942, 0.0888, 0.0844, 0.079, 0.0742, 0.0656, 0.0624, 0.0562, 0.0496, 0.0476, 0.0452, 0.042, 0.0396, 0.038, 0.0376, 0.0364, 0.036, 0.034, 0.0332, 0.033, 0.0332, 0.0326, 0.0324, 0.0322, 0.0322, 0.9044, 0.0314, 0.7826, 0.8976, 0.9452, 0.8364, 0.7428, 0.0292, 0.029, 0.0246, 0.0222, 0.021, 0.0216, 0.0204, 0.0188, 0.019, 0.0184, 0.0176, 0.017, 0.017, 0.0166, 0.0166, 0.0164, 0.0172, 0.0176, 0.0198, 0.0182, 0.0206, 0.0216, 0.021, 0.87, 0.9452, 0.8452, 0.2446, 0.041, 0.039, 0.042, 0.04, 0.0416, 0.0436, 0.0452, 0.0462, 0.0526, 0.0572, 0.0692, 0.8972, 0.9342, 0.7824, 0.1162, 0.0936, 0.9344, 0.1036, 0.082, 0.0618, 0.7716, 0.7914, 0.8022, 0.816, 0.8234, 0.8438, 0.8556, 0.8954, 0.9296, 0.9484, 0.9126, 0.8724, 0.8502, 0.8272, 0.8202, 0.8126, 0.799, 0.7884, 0.77, 0.062, 0.0624, 0.0622, 0.064, 0.0666, 0.0678, 0.0686, 0.069, 0.0698, 0.071, 0.0722, 0.076, 0.079, 0.0834, 0.0882, 0.0942, 0.1038, 0.1258, 0.2002, 0.8694], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/CytochromB561_N.gap.json b/pfam_gap_rates/CytochromB561_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..38871096a6ce7f106420d45e2d9e5b9ef51b7c16
--- /dev/null
+++ b/pfam_gap_rates/CytochromB561_N.gap.json
@@ -0,0 +1 @@
+{"family": "CytochromB561_N", "n_seqs": 147, "length": 771, "gap_rates": [0.8503401360544217, 0.8367346938775511, 0.8367346938775511, 0.8231292517006803, 0.7687074829931972, 0.7551020408163265, 0.6598639455782312, 0.6190476190476191, 0.6190476190476191, 0.6054421768707483, 0.6054421768707483, 0.6054421768707483, 0.6054421768707483, 0.6054421768707483, 0.6054421768707483, 0.5986394557823129, 0.5918367346938775, 0.5918367346938775, 0.5918367346938775, 0.5918367346938775, 0.5918367346938775, 0.5918367346938775, 0.5850340136054422, 0.5850340136054422, 0.5850340136054422, 0.5850340136054422, 0.5850340136054422, 0.5850340136054422, 0.5850340136054422, 0.5850340136054422, 0.5850340136054422, 0.5918367346938775, 0.5918367346938775, 0.5918367346938775, 0.5850340136054422, 0.5850340136054422, 0.5850340136054422, 0.5850340136054422, 0.5850340136054422, 0.5850340136054422, 0.5850340136054422, 0.5850340136054422, 0.7210884353741497, 0.7074829931972789, 0.7006802721088435, 0.7074829931972789, 0.6938775510204082, 0.8299319727891157, 0.8367346938775511, 0.8367346938775511, 0.8503401360544217, 0.8503401360544217, 0.8503401360544217, 0.8503401360544217, 0.8367346938775511, 0.8299319727891157, 0.8299319727891157, 0.5850340136054422, 0.5782312925170068, 0.5782312925170068, 0.5714285714285714, 0.5714285714285714, 0.5782312925170068, 0.564625850340136, 0.564625850340136, 0.5578231292517006, 0.564625850340136, 0.5578231292517006, 0.5510204081632653, 0.5510204081632653, 0.5510204081632653, 0.54421768707483, 0.5374149659863946, 0.5374149659863946, 0.5374149659863946, 0.5374149659863946, 0.5510204081632653, 0.5510204081632653, 0.5374149659863946, 0.5374149659863946, 0.5374149659863946, 0.5306122448979592, 0.5238095238095238, 0.5306122448979592, 0.5306122448979592, 0.5238095238095238, 0.5238095238095238, 0.5238095238095238, 0.5238095238095238, 0.5238095238095238, 0.5238095238095238, 0.5238095238095238, 0.5238095238095238, 0.5238095238095238, 0.5238095238095238, 0.5238095238095238, 0.5238095238095238, 0.5238095238095238, 0.9115646258503401, 0.891156462585034, 0.8435374149659864, 0.8571428571428571, 0.8571428571428571, 0.8503401360544217, 0.8503401360544217, 0.8503401360544217, 0.8639455782312925, 0.8163265306122449, 0.8027210884353742, 0.782312925170068, 0.9455782312925171, 0.5238095238095238, 0.5238095238095238, 0.5238095238095238, 0.5238095238095238, 0.5238095238095238, 0.5238095238095238, 0.5170068027210885, 0.5170068027210885, 0.5170068027210885, 0.5170068027210885, 0.5170068027210885, 0.5102040816326531, 0.5102040816326531, 0.5102040816326531, 0.5102040816326531, 0.5102040816326531, 0.5102040816326531, 0.5102040816326531, 0.5102040816326531, 0.5102040816326531, 0.5102040816326531, 0.5102040816326531, 0.5170068027210885, 0.5170068027210885, 0.5782312925170068, 0.5714285714285714, 0.9251700680272109, 0.9047619047619048, 0.673469387755102, 0.6666666666666666, 0.6530612244897959, 0.6326530612244898, 0.5170068027210885, 0.5170068027210885, 0.5102040816326531, 0.5034013605442177, 0.5102040816326531, 0.673469387755102, 0.7074829931972789, 0.9183673469387755, 0.6938775510204082, 0.5510204081632653, 0.5170068027210885, 0.5102040816326531, 0.5102040816326531, 0.4965986394557823, 0.4965986394557823, 0.4965986394557823, 0.5034013605442177, 0.9115646258503401, 0.5306122448979592, 0.5170068027210885, 0.4965986394557823, 0.8163265306122449, 0.8979591836734694, 0.9387755102040817, 0.8367346938775511, 0.8027210884353742, 0.6054421768707483, 0.5714285714285714, 0.564625850340136, 0.5578231292517006, 0.5374149659863946, 0.5510204081632653, 0.5510204081632653, 0.5510204081632653, 0.5578231292517006, 0.8707482993197279, 0.8367346938775511, 0.5850340136054422, 0.5714285714285714, 0.5714285714285714, 0.5714285714285714, 0.564625850340136, 0.5578231292517006, 0.54421768707483, 0.5374149659863946, 0.54421768707483, 0.5238095238095238, 0.5170068027210885, 0.5102040816326531, 0.47619047619047616, 0.46938775510204084, 0.46938775510204084, 0.46938775510204084, 0.46938775510204084, 0.5170068027210885, 0.46938775510204084, 0.46258503401360546, 0.5238095238095238, 0.5170068027210885, 0.5170068027210885, 0.5034013605442177, 0.5102040816326531, 0.5102040816326531, 0.54421768707483, 0.5034013605442177, 0.4965986394557823, 0.47619047619047616, 0.9455782312925171, 0.782312925170068, 0.54421768707483, 0.54421768707483, 0.5238095238095238, 0.7006802721088435, 0.6938775510204082, 0.6598639455782312, 0.6462585034013606, 0.8231292517006803, 0.8571428571428571, 0.8367346938775511, 0.7891156462585034, 0.5510204081632653, 0.5714285714285714, 0.5850340136054422, 0.6054421768707483, 0.5510204081632653, 0.46938775510204084, 0.46258503401360546, 0.48299319727891155, 0.4897959183673469, 0.46258503401360546, 0.7891156462585034, 0.8435374149659864, 0.891156462585034, 0.8979591836734694, 0.8979591836734694, 0.9047619047619048, 0.9455782312925171, 0.9455782312925171, 0.9115646258503401, 0.8979591836734694, 0.8979591836734694, 0.891156462585034, 0.8639455782312925, 0.8231292517006803, 0.782312925170068, 0.7414965986394558, 0.6870748299319728, 0.673469387755102, 0.5850340136054422, 0.5714285714285714, 0.42857142857142855, 0.4217687074829932, 0.46258503401360546, 0.42857142857142855, 0.43537414965986393, 0.4217687074829932, 0.5510204081632653, 0.5986394557823129, 0.5374149659863946, 0.5034013605442177, 0.54421768707483, 0.47619047619047616, 0.4013605442176871, 0.4013605442176871, 0.3945578231292517, 0.3945578231292517, 0.3877551020408163, 0.3877551020408163, 0.3877551020408163, 0.3945578231292517, 0.41496598639455784, 0.41496598639455784, 0.4489795918367347, 0.3945578231292517, 0.38095238095238093, 0.3741496598639456, 0.3673469387755102, 0.3673469387755102, 0.3673469387755102, 0.3673469387755102, 0.8095238095238095, 0.36054421768707484, 0.36054421768707484, 0.36054421768707484, 0.36054421768707484, 0.36054421768707484, 0.36054421768707484, 0.36054421768707484, 0.38095238095238093, 0.38095238095238093, 0.38095238095238093, 0.3741496598639456, 0.3741496598639456, 0.3877551020408163, 0.7074829931972789, 0.7551020408163265, 0.6870748299319728, 0.4421768707482993, 0.43537414965986393, 0.43537414965986393, 0.41496598639455784, 0.4013605442176871, 0.7210884353741497, 0.7619047619047619, 0.7619047619047619, 0.7687074829931972, 0.7687074829931972, 0.7687074829931972, 0.9183673469387755, 0.9251700680272109, 0.9387755102040817, 0.9387755102040817, 0.9387755102040817, 0.9251700680272109, 0.9183673469387755, 0.7687074829931972, 0.7687074829931972, 0.7687074829931972, 0.7619047619047619, 0.7551020408163265, 0.7074829931972789, 0.47619047619047616, 0.46258503401360546, 0.4013605442176871, 0.3877551020408163, 0.3741496598639456, 0.3673469387755102, 0.36054421768707484, 0.40816326530612246, 0.3945578231292517, 0.3673469387755102, 0.36054421768707484, 0.7482993197278912, 0.9183673469387755, 0.9455782312925171, 0.9047619047619048, 0.7074829931972789, 0.3401360544217687, 0.3333333333333333, 0.3333333333333333, 0.3333333333333333, 0.3333333333333333, 0.3401360544217687, 0.32653061224489793, 0.3197278911564626, 0.3197278911564626, 0.32653061224489793, 0.32653061224489793, 0.32653061224489793, 0.3197278911564626, 0.3129251700680272, 0.30612244897959184, 0.30612244897959184, 0.29931972789115646, 0.30612244897959184, 0.3197278911564626, 0.32653061224489793, 0.32653061224489793, 0.3401360544217687, 0.7959183673469388, 0.4013605442176871, 0.35374149659863946, 0.32653061224489793, 0.32653061224489793, 0.30612244897959184, 0.30612244897959184, 0.30612244897959184, 0.3197278911564626, 0.30612244897959184, 0.3129251700680272, 0.3129251700680272, 0.30612244897959184, 0.32653061224489793, 0.3333333333333333, 0.29931972789115646, 0.29931972789115646, 0.29931972789115646, 0.29931972789115646, 0.2925170068027211, 0.2925170068027211, 0.2857142857142857, 0.2925170068027211, 0.29931972789115646, 0.6258503401360545, 0.6938775510204082, 0.9047619047619048, 0.7074829931972789, 0.673469387755102, 0.5918367346938775, 0.46258503401360546, 0.4489795918367347, 0.46258503401360546, 0.4489795918367347, 0.4489795918367347, 0.2789115646258503, 0.5986394557823129, 0.6122448979591837, 0.7619047619047619, 0.7891156462585034, 0.8503401360544217, 0.8775510204081632, 0.8979591836734694, 0.9251700680272109, 0.9387755102040817, 0.8979591836734694, 0.8775510204081632, 0.8707482993197279, 0.8435374149659864, 0.7619047619047619, 0.7619047619047619, 0.6054421768707483, 0.5578231292517006, 0.23129251700680273, 0.21768707482993196, 0.2108843537414966, 0.20408163265306123, 0.20408163265306123, 0.19727891156462585, 0.19727891156462585, 0.1836734693877551, 0.1836734693877551, 0.17687074829931973, 0.17687074829931973, 0.16326530612244897, 0.16326530612244897, 0.16326530612244897, 0.16326530612244897, 0.17687074829931973, 0.16326530612244897, 0.16326530612244897, 0.16326530612244897, 0.16326530612244897, 0.16326530612244897, 0.16326530612244897, 0.16326530612244897, 0.16326530612244897, 0.16326530612244897, 0.16326530612244897, 0.16326530612244897, 0.16326530612244897, 0.17006802721088435, 0.16326530612244897, 0.16326530612244897, 0.16326530612244897, 0.1564625850340136, 0.1564625850340136, 0.16326530612244897, 0.1564625850340136, 0.1564625850340136, 0.6258503401360545, 0.7346938775510204, 0.7346938775510204, 0.7346938775510204, 0.7346938775510204, 0.7346938775510204, 0.7346938775510204, 0.7346938775510204, 0.7346938775510204, 0.7414965986394558, 0.7482993197278912, 0.7619047619047619, 0.7687074829931972, 0.7755102040816326, 0.7959183673469388, 0.8027210884353742, 0.8367346938775511, 0.8571428571428571, 0.8299319727891157, 0.7959183673469388, 0.7959183673469388, 0.7687074829931972, 0.7687074829931972, 0.7551020408163265, 0.7482993197278912, 0.7346938775510204, 0.7346938775510204, 0.7346938775510204, 0.7346938775510204, 0.7346938775510204, 0.7346938775510204, 0.7346938775510204, 0.7346938775510204, 0.7278911564625851, 0.20408163265306123, 0.1836734693877551, 0.17006802721088435, 0.17687074829931973, 0.17006802721088435, 0.17006802721088435, 0.17006802721088435, 0.16326530612244897, 0.16326530612244897, 0.16326530612244897, 0.16326530612244897, 0.1564625850340136, 0.16326530612244897, 0.1564625850340136, 0.1564625850340136, 0.16326530612244897, 0.16326530612244897, 0.17006802721088435, 0.17006802721088435, 0.16326530612244897, 0.16326530612244897, 0.6190476190476191, 0.5510204081632653, 0.4421768707482993, 0.7414965986394558, 0.7482993197278912, 0.7755102040816326, 0.7891156462585034, 0.8707482993197279, 0.9387755102040817, 0.8503401360544217, 0.782312925170068, 0.7687074829931972, 0.7414965986394558, 0.7414965986394558, 0.2789115646258503, 0.272108843537415, 0.2653061224489796, 0.2585034013605442, 0.2585034013605442, 0.25170068027210885, 0.25170068027210885, 0.14285714285714285, 0.14285714285714285, 0.1360544217687075, 0.1360544217687075, 0.1292517006802721, 0.12244897959183673, 0.12244897959183673, 0.11564625850340136, 0.6326530612244898, 0.5918367346938775, 0.5782312925170068, 0.5714285714285714, 0.5714285714285714, 0.564625850340136, 0.5374149659863946, 0.7074829931972789, 0.7142857142857143, 0.7278911564625851, 0.7414965986394558, 0.7414965986394558, 0.7551020408163265, 0.7619047619047619, 0.7687074829931972, 0.7755102040816326, 0.7959183673469388, 0.7959183673469388, 0.7755102040816326, 0.7619047619047619, 0.7619047619047619, 0.7414965986394558, 0.7414965986394558, 0.7278911564625851, 0.7278911564625851, 0.7074829931972789, 0.7074829931972789, 0.09523809523809523, 0.07482993197278912, 0.06802721088435375, 0.06802721088435375, 0.06802721088435375, 0.06802721088435375, 0.06802721088435375, 0.06802721088435375, 0.06802721088435375, 0.06802721088435375, 0.06802721088435375, 0.06802721088435375, 0.06802721088435375, 0.07482993197278912, 0.07482993197278912, 0.07482993197278912, 0.08163265306122448, 0.08843537414965986, 0.10204081632653061, 0.09523809523809523, 0.06802721088435375, 0.06802721088435375, 0.06802721088435375, 0.06802721088435375, 0.061224489795918366, 0.061224489795918366, 0.061224489795918366, 0.061224489795918366, 0.061224489795918366, 0.061224489795918366, 0.8775510204081632, 0.8843537414965986, 0.8843537414965986, 0.8843537414965986, 0.9115646258503401, 0.9115646258503401, 0.9047619047619048, 0.8843537414965986, 0.8843537414965986, 0.8843537414965986, 0.8775510204081632, 0.6938775510204082, 0.6802721088435374, 0.6598639455782312, 0.12244897959183673, 0.14285714285714285, 0.11564625850340136, 0.08843537414965986, 0.05442176870748299, 0.05442176870748299, 0.05442176870748299, 0.05442176870748299, 0.05442176870748299, 0.05442176870748299, 0.05442176870748299, 0.05442176870748299, 0.05442176870748299, 0.05442176870748299, 0.05442176870748299, 0.05442176870748299, 0.061224489795918366, 0.061224489795918366, 0.061224489795918366, 0.061224489795918366, 0.061224489795918366, 0.06802721088435375, 0.06802721088435375, 0.07482993197278912, 0.07482993197278912, 0.07482993197278912, 0.3333333333333333, 0.30612244897959184, 0.3197278911564626, 0.6938775510204082, 0.6394557823129252, 0.32653061224489793, 0.23129251700680273, 0.19727891156462585, 0.564625850340136, 0.7687074829931972, 0.7687074829931972, 0.7687074829931972, 0.7687074829931972, 0.7755102040816326, 0.7755102040816326, 0.7891156462585034, 0.7891156462585034, 0.7755102040816326, 0.7755102040816326, 0.7755102040816326, 0.7687074829931972, 0.7687074829931972, 0.7687074829931972, 0.7619047619047619, 0.6122448979591837, 0.5782312925170068, 0.5714285714285714, 0.54421768707483, 0.5986394557823129, 0.5918367346938775, 0.5714285714285714, 0.43537414965986393, 0.40816326530612246, 0.14965986394557823, 0.10204081632653061, 0.10204081632653061, 0.08163265306122448, 0.10884353741496598, 0.10884353741496598, 0.09523809523809523, 0.09523809523809523, 0.09523809523809523, 0.09523809523809523, 0.09523809523809523, 0.10204081632653061, 0.10204081632653061, 0.09523809523809523, 0.09523809523809523, 0.10884353741496598, 0.12244897959183673, 0.10204081632653061, 0.7687074829931972, 0.8979591836734694, 0.9183673469387755, 0.9251700680272109, 0.9115646258503401, 0.891156462585034, 0.7346938775510204, 0.10884353741496598, 0.09523809523809523, 0.12244897959183673, 0.09523809523809523, 0.10204081632653061, 0.1292517006802721, 0.12244897959183673, 0.1360544217687075, 0.08843537414965986, 0.08843537414965986, 0.09523809523809523, 0.08843537414965986, 0.08843537414965986, 0.09523809523809523, 0.08843537414965986, 0.08843537414965986, 0.08843537414965986, 0.08843537414965986, 0.08843537414965986, 0.08843537414965986, 0.08843537414965986, 0.08843537414965986, 0.09523809523809523, 0.09523809523809523, 0.9455782312925171, 0.8571428571428571, 0.09523809523809523, 0.09523809523809523, 0.08843537414965986, 0.09523809523809523, 0.10204081632653061, 0.8299319727891157, 0.9115646258503401, 0.8979591836734694, 0.8299319727891157, 0.09523809523809523, 0.09523809523809523, 0.10884353741496598, 0.10204081632653061, 0.10884353741496598, 0.11564625850340136, 0.12244897959183673, 0.11564625850340136, 0.11564625850340136, 0.11564625850340136, 0.11564625850340136, 0.11564625850340136, 0.12244897959183673, 0.12244897959183673, 0.12244897959183673, 0.12244897959183673, 0.12244897959183673, 0.12244897959183673, 0.12244897959183673, 0.1292517006802721, 0.14285714285714285, 0.14285714285714285, 0.14965986394557823, 0.17006802721088435, 0.14285714285714285, 0.14965986394557823, 0.1564625850340136, 0.14965986394557823, 0.17687074829931973, 0.19047619047619047, 0.19047619047619047, 0.2108843537414966, 0.2108843537414966, 0.24489795918367346, 0.25170068027210885, 0.2585034013605442, 0.272108843537415, 0.2789115646258503, 0.2925170068027211, 0.29931972789115646, 0.30612244897959184, 0.3129251700680272, 0.3129251700680272, 0.3197278911564626, 0.5850340136054422], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Cytochrom_C_asm.gap.json b/pfam_gap_rates/Cytochrom_C_asm.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..caec1c269d230f4c2f07747888e31ccf14f830f4
--- /dev/null
+++ b/pfam_gap_rates/Cytochrom_C_asm.gap.json
@@ -0,0 +1 @@
+{"family": "Cytochrom_C_asm", "n_seqs": 2928, "length": 285, "gap_rates": [0.6567622950819673, 0.5611338797814208, 0.5269808743169399, 0.4900956284153005, 0.45901639344262296, 0.4375, 0.4173497267759563, 0.399931693989071, 0.38148907103825136, 0.36441256830601093, 0.35450819672131145, 0.34665300546448086, 0.3405054644808743, 0.33367486338797814, 0.33299180327868855, 0.328551912568306, 0.3251366120218579, 0.3237704918032787, 0.32206284153005466, 0.31796448087431695, 0.3165983606557377, 0.31796448087431695, 0.4771174863387978, 0.45457650273224043, 0.4689207650273224, 0.40539617486338797, 0.37260928961748635, 0.3531420765027322, 0.537568306010929, 0.49556010928961747, 0.4610655737704918, 0.3128415300546448, 0.2855191256830601, 0.24043715846994534, 0.2260928961748634, 0.2103825136612022, 0.20252732240437157, 0.1909153005464481, 0.18510928961748635, 0.18203551912568305, 0.1717896174863388, 0.15915300546448088, 0.14993169398907105, 0.13934426229508196, 0.1366120218579235, 0.13831967213114754, 0.14412568306010928, 0.15027322404371585, 0.15300546448087432, 0.16530054644808742, 0.16939890710382513, 0.6403688524590164, 0.66974043715847, 0.6816939890710383, 0.6878415300546448, 0.817964480874317, 0.8842213114754098, 0.8883196721311475, 0.8896857923497268, 0.8961748633879781, 0.9122267759562842, 0.9019808743169399, 0.891051912568306, 0.889344262295082, 0.8852459016393442, 0.8784153005464481, 0.6909153005464481, 0.6851092896174863, 0.6738387978142076, 0.6659836065573771, 0.5963114754098361, 0.4187158469945355, 0.38353825136612024, 0.34289617486338797, 0.2739071038251366, 0.19057377049180327, 0.1598360655737705, 0.14924863387978143, 0.1369535519125683, 0.07889344262295082, 0.07718579234972678, 0.07513661202185792, 0.07581967213114754, 0.0778688524590164, 0.07172131147540983, 0.07274590163934426, 0.07547814207650273, 0.07103825136612021, 0.06284153005464481, 0.0546448087431694, 0.05362021857923497, 0.05327868852459016, 0.05122950819672131, 0.050887978142076504, 0.05122950819672131, 0.05122950819672131, 0.05157103825136612, 0.050887978142076504, 0.05225409836065574, 0.050204918032786885, 0.050204918032786885, 0.050204918032786885, 0.050546448087431695, 0.04918032786885246, 0.0467896174863388, 0.044740437158469946, 0.04234972677595628, 0.041325136612021855, 0.03961748633879782, 0.03859289617486339, 0.036885245901639344, 0.035860655737704916, 0.0351775956284153, 0.03483606557377049, 0.03449453551912568, 0.03415300546448088, 0.03449453551912568, 0.4603825136612022, 0.4723360655737705, 0.48189890710382516, 0.4853142076502732, 0.5403005464480874, 0.5891393442622951, 0.8565573770491803, 0.8709016393442623, 0.8954918032786885, 0.9047131147540983, 0.9173497267759563, 0.9204234972677595, 0.9217896174863388, 0.9262295081967213, 0.9262295081967213, 0.9279371584699454, 0.9296448087431693, 0.930327868852459, 0.9337431693989071, 0.9351092896174863, 0.9361338797814208, 0.9361338797814208, 0.9378415300546448, 0.9433060109289617, 0.9443306010928961, 0.9450136612021858, 0.9467213114754098, 0.9480874316939891, 0.9497950819672131, 0.9491120218579235, 0.9480874316939891, 0.9463797814207651, 0.9443306010928961, 0.9433060109289617, 0.9426229508196722, 0.9364754098360656, 0.9361338797814208, 0.9357923497267759, 0.9347677595628415, 0.9323770491803278, 0.9299863387978142, 0.9286202185792349, 0.9269125683060109, 0.9262295081967213, 0.9224726775956285, 0.921448087431694, 0.91974043715847, 0.9135928961748634, 0.8992486338797814, 0.8801229508196722, 0.862363387978142, 0.8480191256830601, 0.6290983606557377, 0.600068306010929, 0.5683060109289617, 0.5536202185792349, 0.5440573770491803, 0.5368852459016393, 0.5218579234972678, 0.5034153005464481, 0.48599726775956287, 0.3271857923497268, 0.31386612021857924, 0.09289617486338798, 0.08640710382513661, 0.07308743169398907, 0.06728142076502733, 0.06557377049180328, 0.06420765027322405, 0.11612021857923498, 0.09904371584699453, 0.08504098360655737, 0.05327868852459016, 0.04064207650273224, 0.036202185792349725, 0.036543715846994534, 0.03551912568306011, 0.03381147540983607, 0.03346994535519126, 0.03381147540983607, 0.03415300546448088, 0.03381147540983607, 0.03551912568306011, 0.03756830601092896, 0.03859289617486339, 0.03927595628415301, 0.040983606557377046, 0.04337431693989071, 0.0471311475409836, 0.0467896174863388, 0.04883879781420765, 0.049863387978142076, 0.050204918032786885, 0.05191256830601093, 0.05157103825136612, 0.05293715846994536, 0.762636612021858, 0.7527322404371585, 0.0546448087431694, 0.055327868852459015, 0.05157103825136612, 0.05157103825136612, 0.05225409836065574, 0.050887978142076504, 0.04918032786885246, 0.04781420765027322, 0.04849726775956284, 0.12329234972677595, 0.11099726775956284, 0.04952185792349727, 0.04918032786885246, 0.04849726775956284, 0.04815573770491803, 0.04815573770491803, 0.04781420765027322, 0.04781420765027322, 0.04849726775956284, 0.04815573770491803, 0.04883879781420765, 0.04883879781420765, 0.04918032786885246, 0.04952185792349727, 0.050204918032786885, 0.049863387978142076, 0.050204918032786885, 0.050204918032786885, 0.050204918032786885, 0.050546448087431695, 0.050887978142076504, 0.11475409836065574, 0.5788934426229508, 0.5659153005464481, 0.07581967213114754, 0.09801912568306011, 0.549863387978142, 0.05976775956284153, 0.05976775956284153, 0.05942622950819672, 0.060792349726775954, 0.06147540983606557, 0.061133879781420764, 0.061133879781420764, 0.06181693989071038, 0.06284153005464481, 0.06215846994535519, 0.06284153005464481, 0.0625, 0.06284153005464481, 0.06352459016393443, 0.06352459016393443, 0.06352459016393443, 0.06420765027322405, 0.0662568306010929, 0.06864754098360656, 0.07581967213114754, 0.0782103825136612, 0.08572404371584699, 0.0860655737704918, 0.09153005464480875, 0.10280054644808743, 0.1168032786885246, 0.13012295081967212, 0.366120218579235, 0.3989071038251366, 0.6021174863387978, 0.40846994535519127, 0.4822404371584699, 0.576844262295082], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DAD.gap.json b/pfam_gap_rates/DAD.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..29291fe447011bdd9145d09b75a675cf981bcdf4
--- /dev/null
+++ b/pfam_gap_rates/DAD.gap.json
@@ -0,0 +1 @@
+{"family": "DAD", "n_seqs": 310, "length": 108, "gap_rates": [0.7709677419354839, 0.3580645161290323, 0.19032258064516128, 0.0935483870967742, 0.07419354838709677, 0.06774193548387097, 0.06451612903225806, 0.06129032258064516, 0.06129032258064516, 0.06129032258064516, 0.06129032258064516, 0.06451612903225806, 0.07419354838709677, 0.1967741935483871, 0.06451612903225806, 0.05806451612903226, 0.054838709677419356, 0.05161290322580645, 0.04838709677419355, 0.04516129032258064, 0.03870967741935484, 0.03870967741935484, 0.03870967741935484, 0.03870967741935484, 0.03870967741935484, 0.03870967741935484, 0.03870967741935484, 0.041935483870967745, 0.03870967741935484, 0.035483870967741936, 0.03225806451612903, 0.03225806451612903, 0.025806451612903226, 0.025806451612903226, 0.025806451612903226, 0.025806451612903226, 0.02903225806451613, 0.025806451612903226, 0.02903225806451613, 0.02903225806451613, 0.02903225806451613, 0.025806451612903226, 0.025806451612903226, 0.025806451612903226, 0.025806451612903226, 0.025806451612903226, 0.02903225806451613, 0.035483870967741936, 0.035483870967741936, 0.035483870967741936, 0.035483870967741936, 0.035483870967741936, 0.035483870967741936, 0.035483870967741936, 0.03870967741935484, 0.03870967741935484, 0.03870967741935484, 0.03870967741935484, 0.03870967741935484, 0.03870967741935484, 0.03870967741935484, 0.03870967741935484, 0.03870967741935484, 0.03870967741935484, 0.03870967741935484, 0.04838709677419355, 0.05161290322580645, 0.054838709677419356, 0.054838709677419356, 0.054838709677419356, 0.054838709677419356, 0.054838709677419356, 0.05806451612903226, 0.12580645161290321, 0.12903225806451613, 0.1064516129032258, 0.2838709677419355, 0.13870967741935483, 0.0935483870967742, 0.1032258064516129, 0.06774193548387097, 0.06129032258064516, 0.05806451612903226, 0.054838709677419356, 0.05161290322580645, 0.04838709677419355, 0.04838709677419355, 0.06129032258064516, 0.06129032258064516, 0.06774193548387097, 0.06774193548387097, 0.06774193548387097, 0.06774193548387097, 0.06774193548387097, 0.06774193548387097, 0.07096774193548387, 0.08064516129032258, 0.08387096774193549, 0.08709677419354839, 0.08709677419354839, 0.08709677419354839, 0.09032258064516129, 0.0967741935483871, 0.1032258064516129, 0.10967741935483871, 0.12258064516129032, 0.12580645161290321, 0.13870967741935483], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DAPDH_C.gap.json b/pfam_gap_rates/DAPDH_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..9ea3a98c411b2ed0fb1c36550b2de051b18d5a92
--- /dev/null
+++ b/pfam_gap_rates/DAPDH_C.gap.json
@@ -0,0 +1 @@
+{"family": "DAPDH_C", "n_seqs": 281, "length": 156, "gap_rates": [0.02491103202846975, 0.021352313167259787, 0.021352313167259787, 0.021352313167259787, 0.021352313167259787, 0.021352313167259787, 0.021352313167259787, 0.021352313167259787, 0.021352313167259787, 0.021352313167259787, 0.021352313167259787, 0.021352313167259787, 0.021352313167259787, 0.021352313167259787, 0.021352313167259787, 0.02491103202846975, 0.02491103202846975, 0.021352313167259787, 0.021352313167259787, 0.021352313167259787, 0.02491103202846975, 0.021352313167259787, 0.021352313167259787, 0.021352313167259787, 0.017793594306049824, 0.017793594306049824, 0.017793594306049824, 0.017793594306049824, 0.017793594306049824, 0.017793594306049824, 0.017793594306049824, 0.017793594306049824, 0.017793594306049824, 0.021352313167259787, 0.021352313167259787, 0.021352313167259787, 0.021352313167259787, 0.021352313167259787, 0.021352313167259787, 0.021352313167259787, 0.021352313167259787, 0.021352313167259787, 0.021352313167259787, 0.021352313167259787, 0.021352313167259787, 0.021352313167259787, 0.017793594306049824, 0.017793594306049824, 0.021352313167259787, 0.02491103202846975, 0.02491103202846975, 0.02491103202846975, 0.02491103202846975, 0.02491103202846975, 0.02491103202846975, 0.09252669039145907, 0.14590747330960854, 0.18861209964412812, 0.2277580071174377, 0.27402135231316727, 0.2775800711743772, 0.2775800711743772, 0.2775800711743772, 0.2775800711743772, 0.2775800711743772, 0.28113879003558717, 0.28113879003558717, 0.2775800711743772, 0.2775800711743772, 0.2846975088967972, 0.2846975088967972, 0.28113879003558717, 0.2775800711743772, 0.2597864768683274, 0.23843416370106763, 0.2313167259786477, 0.2313167259786477, 0.2313167259786477, 0.2313167259786477, 0.2313167259786477, 0.2313167259786477, 0.2313167259786477, 0.2313167259786477, 0.2313167259786477, 0.24555160142348753, 0.23487544483985764, 0.2313167259786477, 0.2313167259786477, 0.2313167259786477, 0.2313167259786477, 0.2313167259786477, 0.23487544483985764, 0.23487544483985764, 0.23487544483985764, 0.23487544483985764, 0.2313167259786477, 0.2313167259786477, 0.2313167259786477, 0.23487544483985764, 0.24555160142348753, 0.2313167259786477, 0.2597864768683274, 0.2313167259786477, 0.2313167259786477, 0.2313167259786477, 0.2313167259786477, 0.2313167259786477, 0.2313167259786477, 0.2313167259786477, 0.2313167259786477, 0.2313167259786477, 0.2313167259786477, 0.2313167259786477, 0.2313167259786477, 0.23487544483985764, 0.23487544483985764, 0.23843416370106763, 0.2597864768683274, 0.26334519572953735, 0.2669039145907473, 0.23843416370106763, 0.23487544483985764, 0.23487544483985764, 0.23487544483985764, 0.23487544483985764, 0.2313167259786477, 0.2313167259786477, 0.2313167259786477, 0.2313167259786477, 0.2313167259786477, 0.2313167259786477, 0.2313167259786477, 0.2313167259786477, 0.2313167259786477, 0.2313167259786477, 0.2313167259786477, 0.23487544483985764, 0.23843416370106763, 0.23843416370106763, 0.24199288256227758, 0.24199288256227758, 0.24199288256227758, 0.2775800711743772, 0.6690391459074733, 0.608540925266904, 0.24199288256227758, 0.24199288256227758, 0.24199288256227758, 0.24199288256227758, 0.24199288256227758, 0.24199288256227758, 0.24199288256227758, 0.24199288256227758, 0.24199288256227758, 0.2526690391459075, 0.3274021352313167], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DASH_Dad2.gap.json b/pfam_gap_rates/DASH_Dad2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d943ba9e3f42697a882f0596deda8c3e4b221bb7
--- /dev/null
+++ b/pfam_gap_rates/DASH_Dad2.gap.json
@@ -0,0 +1 @@
+{"family": "DASH_Dad2", "n_seqs": 130, "length": 114, "gap_rates": [0.2153846153846154, 0.13076923076923078, 0.08461538461538462, 0.06153846153846154, 0.03076923076923077, 0.03076923076923077, 0.023076923076923078, 0.007692307692307693, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.007692307692307693, 0.007692307692307693, 0.007692307692307693, 0.007692307692307693, 0.015384615384615385, 0.015384615384615385, 0.015384615384615385, 0.023076923076923078, 0.023076923076923078, 0.038461538461538464, 0.038461538461538464, 0.038461538461538464, 0.038461538461538464, 0.038461538461538464, 0.038461538461538464, 0.038461538461538464, 0.038461538461538464, 0.038461538461538464, 0.038461538461538464, 0.038461538461538464, 0.038461538461538464, 0.038461538461538464, 0.046153846153846156, 0.046153846153846156, 0.046153846153846156, 0.05384615384615385, 0.06153846153846154, 0.06923076923076923, 0.06923076923076923, 0.09230769230769231, 0.11538461538461539, 0.16153846153846155, 0.6, 0.5846153846153846, 0.5692307692307692, 0.5846153846153846, 0.5923076923076923, 0.9230769230769231, 0.9461538461538461, 0.9461538461538461, 0.9461538461538461, 0.9461538461538461, 0.9461538461538461, 0.9384615384615385, 0.9230769230769231, 0.4, 0.34615384615384615, 0.33076923076923076, 0.2846153846153846, 0.3153846153846154, 0.33076923076923076, 0.34615384615384615, 0.34615384615384615, 0.3769230769230769, 0.4230769230769231, 0.45384615384615384, 0.5230769230769231, 0.5, 0.4307692307692308, 0.3769230769230769, 0.2923076923076923, 0.9307692307692308, 0.9461538461538461, 0.9461538461538461, 0.9461538461538461, 0.9461538461538461, 0.9461538461538461, 0.9307692307692308, 0.9153846153846154, 0.23846153846153847, 0.23846153846153847, 0.23846153846153847, 0.24615384615384617, 0.23846153846153847, 0.23846153846153847, 0.24615384615384617, 0.24615384615384617, 0.26153846153846155, 0.2692307692307692, 0.4153846153846154], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DASH_Dad4.gap.json b/pfam_gap_rates/DASH_Dad4.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..799a912cb2926fce8e7c89e3824316a4af6797fe
--- /dev/null
+++ b/pfam_gap_rates/DASH_Dad4.gap.json
@@ -0,0 +1 @@
+{"family": "DASH_Dad4", "n_seqs": 108, "length": 71, "gap_rates": [0.18518518518518517, 0.09259259259259259, 0.07407407407407407, 0.06481481481481481, 0.06481481481481481, 0.06481481481481481, 0.06481481481481481, 0.06481481481481481, 0.06481481481481481, 0.06481481481481481, 0.07407407407407407, 0.07407407407407407, 0.07407407407407407, 0.07407407407407407, 0.06481481481481481, 0.06481481481481481, 0.06481481481481481, 0.06481481481481481, 0.06481481481481481, 0.05555555555555555, 0.018518518518518517, 0.018518518518518517, 0.018518518518518517, 0.018518518518518517, 0.018518518518518517, 0.018518518518518517, 0.018518518518518517, 0.018518518518518517, 0.018518518518518517, 0.009259259259259259, 0.009259259259259259, 0.009259259259259259, 0.009259259259259259, 0.009259259259259259, 0.0, 0.018518518518518517, 0.018518518518518517, 0.018518518518518517, 0.018518518518518517, 0.018518518518518517, 0.018518518518518517, 0.018518518518518517, 0.018518518518518517, 0.018518518518518517, 0.018518518518518517, 0.018518518518518517, 0.018518518518518517, 0.018518518518518517, 0.018518518518518517, 0.018518518518518517, 0.018518518518518517, 0.018518518518518517, 0.018518518518518517, 0.018518518518518517, 0.018518518518518517, 0.018518518518518517, 0.027777777777777776, 0.027777777777777776, 0.027777777777777776, 0.05555555555555555, 0.05555555555555555, 0.06481481481481481, 0.07407407407407407, 0.08333333333333333, 0.12037037037037036, 0.12962962962962962, 0.2037037037037037, 0.28703703703703703, 0.3425925925925926, 0.4074074074074074, 0.4444444444444444], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DBP10CT.gap.json b/pfam_gap_rates/DBP10CT.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..6d1ff58653bf5260c813b303dd29a24830a7fb07
--- /dev/null
+++ b/pfam_gap_rates/DBP10CT.gap.json
@@ -0,0 +1 @@
+{"family": "DBP10CT", "n_seqs": 289, "length": 76, "gap_rates": [0.2179930795847751, 0.1384083044982699, 0.08304498269896193, 0.05536332179930796, 0.04498269896193772, 0.04152249134948097, 0.04152249134948097, 0.2560553633217993, 0.08996539792387544, 0.0657439446366782, 0.1972318339100346, 0.21453287197231835, 0.08996539792387544, 0.04152249134948097, 0.03460207612456748, 0.031141868512110725, 0.0726643598615917, 0.04844290657439446, 0.7854671280276817, 0.903114186851211, 0.6885813148788927, 0.532871972318339, 0.4913494809688581, 0.0034602076124567475, 0.01384083044982699, 0.01384083044982699, 0.0034602076124567475, 0.006920415224913495, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.006920415224913495, 0.01384083044982699, 0.5086505190311419, 0.10034602076124567, 0.05190311418685121, 0.14878892733564014, 0.06228373702422145, 0.9100346020761245, 0.9342560553633218, 0.7612456747404844, 0.04152249134948097, 0.04498269896193772, 0.7681660899653979, 0.9377162629757786, 0.7716262975778547, 0.7577854671280276, 0.01384083044982699, 0.006920415224913495, 0.0034602076124567475, 0.0034602076124567475, 0.0034602076124567475, 0.0034602076124567475, 0.0034602076124567475, 0.0034602076124567475, 0.006920415224913495, 0.006920415224913495, 0.006920415224913495, 0.006920415224913495, 0.09688581314878893, 0.01730103806228374, 0.01384083044982699, 0.01384083044982699, 0.01384083044982699, 0.9100346020761245, 0.02422145328719723, 0.02422145328719723, 0.02422145328719723, 0.02422145328719723, 0.02768166089965398, 0.031141868512110725, 0.05190311418685121, 0.5986159169550173], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DCP2.gap.json b/pfam_gap_rates/DCP2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..31d3ef09a47fbd96099893d0ec7ed211959cb05c
--- /dev/null
+++ b/pfam_gap_rates/DCP2.gap.json
@@ -0,0 +1 @@
+{"family": "DCP2", "n_seqs": 319, "length": 88, "gap_rates": [0.3793103448275862, 0.12852664576802508, 0.09090909090909091, 0.08150470219435736, 0.07523510971786834, 0.06583072100313479, 0.050156739811912224, 0.03761755485893417, 0.03134796238244514, 0.03134796238244514, 0.03134796238244514, 0.03134796238244514, 0.0438871473354232, 0.034482758620689655, 0.02821316614420063, 0.018808777429467086, 0.01567398119122257, 0.012539184952978056, 0.009404388714733543, 0.003134796238244514, 0.02821316614420063, 0.0, 0.0, 0.0, 0.0, 0.003134796238244514, 0.0, 0.0, 0.003134796238244514, 0.003134796238244514, 0.003134796238244514, 0.003134796238244514, 0.012539184952978056, 0.01567398119122257, 0.01567398119122257, 0.01567398119122257, 0.01567398119122257, 0.01567398119122257, 0.01567398119122257, 0.01567398119122257, 0.01567398119122257, 0.01567398119122257, 0.03761755485893417, 0.025078369905956112, 0.09404388714733543, 0.9028213166144201, 0.06583072100313479, 0.9498432601880877, 0.9247648902821317, 0.050156739811912224, 0.03761755485893417, 0.034482758620689655, 0.02821316614420063, 0.02821316614420063, 0.02821316614420063, 0.02821316614420063, 0.025078369905956112, 0.025078369905956112, 0.025078369905956112, 0.025078369905956112, 0.02821316614420063, 0.03761755485893417, 0.03761755485893417, 0.04075235109717868, 0.03761755485893417, 0.04075235109717868, 0.05642633228840126, 0.05329153605015674, 0.06269592476489028, 0.07210031347962383, 0.07523510971786834, 0.07523510971786834, 0.9028213166144201, 0.7084639498432602, 0.13479623824451412, 0.07210031347962383, 0.06583072100313479, 0.06896551724137931, 0.06896551724137931, 0.06896551724137931, 0.07210031347962383, 0.07210031347962383, 0.07210031347962383, 0.07523510971786834, 0.07523510971786834, 0.07836990595611286, 0.10031347962382445, 0.10031347962382445], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DDE_Tnp_1_2.gap.json b/pfam_gap_rates/DDE_Tnp_1_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..916056aad54b5b570693f907f1890a8395db01be
--- /dev/null
+++ b/pfam_gap_rates/DDE_Tnp_1_2.gap.json
@@ -0,0 +1 @@
+{"family": "DDE_Tnp_1_2", "n_seqs": 1091, "length": 97, "gap_rates": [0.5572868927589367, 0.32172318973418884, 0.2685609532538955, 0.24197983501374887, 0.23373052245646195, 0.23006416131989002, 0.2236480293308891, 0.2227314390467461, 0.22089825847846012, 0.21998166819431714, 0.22089825847846012, 0.2227314390467461, 0.21906507791017416, 0.2153987167736022, 0.21448212648945922, 0.20898258478460127, 0.2080659945004583, 0.2071494042163153, 0.20073327222731438, 0.307974335472044, 0.20989917506874428, 0.19706691109074242, 0.19065077910174152, 0.18056828597616864, 0.1759853345554537, 0.17231897341888175, 0.17323556370302476, 0.16406966086159486, 0.1613198900091659, 0.15582034830430797, 0.15948670944087992, 0.15765352887259396, 0.2016498625114574, 0.7030247479376719, 0.8285976168652612, 0.8845096241979835, 0.8982584784601283, 0.9019248395967002, 0.8964252978918423, 0.8505957836846929, 0.763519706691109, 0.6801099908340972, 0.6691109074243813, 0.6489459211732356, 0.2923923006416132, 0.27131072410632445, 0.1695692025664528, 0.14940421631530706, 0.07882676443629698, 0.045829514207149404, 0.03941338221814849, 0.03299725022914757, 0.027497708524289642, 0.02383134738771769, 0.022914757103574702, 0.021998166819431713, 0.021998166819431713, 0.02016498625114574, 0.016498625114573784, 0.008249312557286892, 0.007332722273143905, 0.007332722273143905, 0.006416131989000917, 0.006416131989000917, 0.006416131989000917, 0.005499541704857928, 0.006416131989000917, 0.008249312557286892, 0.01008249312557287, 0.01008249312557287, 0.01008249312557287, 0.010999083409715857, 0.01466544454628781, 0.01466544454628781, 0.015582034830430797, 0.02016498625114574, 0.02474793767186068, 0.02933088909257562, 0.035747021081576534, 0.03666361136571952, 0.04124656278643447, 0.043996333638863426, 0.04949587534372136, 0.05316223648029331, 0.05866177818515124, 0.06324472960586618, 0.06782768102658111, 0.076076993583868, 0.07882676443629698, 0.08340971585701192, 0.09165902841429881, 0.09899175068744272, 0.12648945921173235, 0.15307057745187902, 0.2603116406966086, 0.3400549954170486, 0.5747021081576535], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DDE_Tnp_1_4.gap.json b/pfam_gap_rates/DDE_Tnp_1_4.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..5d08a341b2f5078205ba3564c524d3485339f9e4
--- /dev/null
+++ b/pfam_gap_rates/DDE_Tnp_1_4.gap.json
@@ -0,0 +1 @@
+{"family": "DDE_Tnp_1_4", "n_seqs": 834, "length": 505, "gap_rates": [0.8980815347721822, 0.7973621103117506, 0.7649880095923262, 0.7434052757793765, 0.7218225419664268, 0.6822541966426858, 0.6606714628297362, 0.6486810551558753, 0.6354916067146283, 0.60431654676259, 0.580335731414868, 0.579136690647482, 0.5719424460431655, 0.5683453237410072, 0.5167865707434053, 0.4940047961630695, 0.47601918465227816, 0.4724220623501199, 0.46882494004796166, 0.46402877697841727, 0.4616306954436451, 0.4616306954436451, 0.4580335731414868, 0.4580335731414868, 0.4580335731414868, 0.45083932853717024, 0.44844124700239807, 0.4448441247002398, 0.4448441247002398, 0.4448441247002398, 0.44364508393285373, 0.44244604316546765, 0.44244604316546765, 0.44244604316546765, 0.44004796163069543, 0.43884892086330934, 0.43884892086330934, 0.43884892086330934, 0.43884892086330934, 0.43764988009592326, 0.44244604316546765, 0.4460431654676259, 0.4448441247002398, 0.4412470023980815, 0.44364508393285373, 0.4448441247002398, 0.44844124700239807, 0.44004796163069543, 0.44844124700239807, 0.657074340527578, 0.5455635491606715, 0.4628297362110312, 0.434052757793765, 0.4304556354916067, 0.42685851318944845, 0.420863309352518, 0.4148681055155875, 0.41127098321342925, 0.4352517985611511, 0.4448441247002398, 0.4196642685851319, 0.41247002398081534, 0.38489208633093525, 0.3752997601918465, 0.37410071942446044, 0.37050359712230213, 0.37050359712230213, 0.36810551558752996, 0.36211031175059955, 0.36211031175059955, 0.3609112709832134, 0.3609112709832134, 0.3609112709832134, 0.3609112709832134, 0.35851318944844124, 0.3597122302158273, 0.3609112709832134, 0.3597122302158273, 0.3597122302158273, 0.3609112709832134, 0.3597122302158273, 0.3597122302158273, 0.37410071942446044, 0.3657074340527578, 0.3669064748201439, 0.37170263788968827, 0.46642685851318944, 0.4460431654676259, 0.4628297362110312, 0.46522781774580335, 0.46522781774580335, 0.7589928057553957, 0.8129496402877698, 0.8741007194244604, 0.9124700239808153, 0.9124700239808153, 0.89568345323741, 0.815347721822542, 0.8033573141486811, 0.45323741007194246, 0.4040767386091127, 0.38848920863309355, 0.3645083932853717, 0.3800959232613909, 0.36810551558752996, 0.3669064748201439, 0.35731414868105515, 0.3609112709832134, 0.3609112709832134, 0.3609112709832134, 0.3609112709832134, 0.3609112709832134, 0.36211031175059955, 0.3657074340527578, 0.3764988009592326, 0.3657074340527578, 0.36810551558752996, 0.3669064748201439, 0.3657074340527578, 0.36810551558752996, 0.3669064748201439, 0.3669064748201439, 0.36930455635491605, 0.7122302158273381, 0.749400479616307, 0.8261390887290168, 0.841726618705036, 0.8525179856115108, 0.8513189448441247, 0.8357314148681055, 0.7913669064748201, 0.7386091127098321, 0.7002398081534772, 0.4556354916067146, 0.4568345323741007, 0.44844124700239807, 0.3764988009592326, 0.3752997601918465, 0.36930455635491605, 0.37050359712230213, 0.36810551558752996, 0.3669064748201439, 0.3657074340527578, 0.37050359712230213, 0.3669064748201439, 0.36810551558752996, 0.37050359712230213, 0.60431654676259, 0.5815347721822542, 0.9232613908872902, 0.8381294964028777, 0.4088729016786571, 0.39928057553956836, 0.3872901678657074, 0.38369304556354916, 0.35851318944844124, 0.36211031175059955, 0.35851318944844124, 0.3513189448441247, 0.34292565947242204, 0.3405275779376499, 0.3381294964028777, 0.3369304556354916, 0.33573141486810554, 0.33093525179856115, 0.32973621103117506, 0.328537170263789, 0.3273381294964029, 0.3405275779376499, 0.34772182254196643, 0.34652278177458035, 0.3441247002398082, 0.3261390887290168, 0.3273381294964029, 0.33093525179856115, 0.33093525179856115, 0.33213429256594723, 0.9376498800959233, 0.9376498800959233, 0.3345323741007194, 0.34172661870503596, 0.48081534772182255, 0.34532374100719426, 0.34532374100719426, 0.34772182254196643, 0.3489208633093525, 0.3501199040767386, 0.35251798561151076, 0.35251798561151076, 0.3513189448441247, 0.3501199040767386, 0.354916067146283, 0.3537170263788969, 0.35611510791366907, 0.35731414868105515, 0.8860911270983214, 0.9256594724220624, 0.8896882494004796, 0.854916067146283, 0.5011990407673861, 0.46522781774580335, 0.3597122302158273, 0.35851318944844124, 0.3597122302158273, 0.35851318944844124, 0.35851318944844124, 0.3489208633093525, 0.34532374100719426, 0.3393285371702638, 0.3405275779376499, 0.3381294964028777, 0.3333333333333333, 0.3333333333333333, 0.3333333333333333, 0.33213429256594723, 0.33213429256594723, 0.33213429256594723, 0.3333333333333333, 0.3345323741007194, 0.33093525179856115, 0.32973621103117506, 0.33093525179856115, 0.9244604316546763, 0.9496402877697842, 0.9496402877697842, 0.9244604316546763, 0.3345323741007194, 0.33573141486810554, 0.3381294964028777, 0.34172661870503596, 0.3441247002398082, 0.3441247002398082, 0.34772182254196643, 0.3441247002398082, 0.3908872901678657, 0.35851318944844124, 0.3764988009592326, 0.35611510791366907, 0.35611510791366907, 0.36330935251798563, 0.3609112709832134, 0.36330935251798563, 0.35731414868105515, 0.3537170263788969, 0.39448441247002397, 0.4316546762589928, 0.3776978417266187, 0.33093525179856115, 0.33213429256594723, 0.33093525179856115, 0.3333333333333333, 0.33213429256594723, 0.3345323741007194, 0.3369304556354916, 0.3405275779376499, 0.34172661870503596, 0.34172661870503596, 0.3405275779376499, 0.3405275779376499, 0.3369304556354916, 0.3381294964028777, 0.3381294964028777, 0.3381294964028777, 0.3405275779376499, 0.34292565947242204, 0.34292565947242204, 0.935251798561151, 0.34772182254196643, 0.34772182254196643, 0.35251798561151076, 0.3501199040767386, 0.35251798561151076, 0.35251798561151076, 0.3513189448441247, 0.3597122302158273, 0.35851318944844124, 0.36330935251798563, 0.3597122302158273, 0.36211031175059955, 0.36330935251798563, 0.354916067146283, 0.35251798561151076, 0.3513189448441247, 0.35611510791366907, 0.35611510791366907, 0.35611510791366907, 0.35251798561151076, 0.35731414868105515, 0.35851318944844124, 0.3645083932853717, 0.37889688249400477, 0.37170263788968827, 0.35611510791366907, 0.36330935251798563, 0.3609112709832134, 0.3752997601918465, 0.38609112709832133, 0.38848920863309355, 0.39568345323741005, 0.4832134292565947, 0.6306954436450839, 0.580335731414868, 0.854916067146283, 0.8788968824940048, 0.8848920863309353, 0.894484412470024, 0.8980815347721822, 0.8980815347721822, 0.8920863309352518, 0.8812949640287769, 0.8645083932853717, 0.7937649880095923, 0.42565947242206237, 0.40167865707434053, 0.39928057553956836, 0.3920863309352518, 0.38968824940047964, 0.38968824940047964, 0.38968824940047964, 0.38848920863309355, 0.38968824940047964, 0.39568345323741005, 0.3980815347721823, 0.3980815347721823, 0.7949640287769785, 0.3908872901678657, 0.8645083932853717, 0.8872901678657075, 0.9148681055155875, 0.919664268585132, 0.9016786570743405, 0.8764988009592326, 0.8597122302158273, 0.38968824940047964, 0.39448441247002397, 0.39568345323741005, 0.3872901678657074, 0.38369304556354916, 0.3824940047961631, 0.3824940047961631, 0.3764988009592326, 0.3800959232613909, 0.3776978417266187, 0.3776978417266187, 0.3800959232613909, 0.37889688249400477, 0.37889688249400477, 0.3824940047961631, 0.381294964028777, 0.3800959232613909, 0.3800959232613909, 0.37889688249400477, 0.3776978417266187, 0.7577937649880095, 0.882494004796163, 0.9280575539568345, 0.9412470023980816, 0.9160671462829736, 0.8633093525179856, 0.7182254196642686, 0.381294964028777, 0.38968824940047964, 0.37410071942446044, 0.7158273381294964, 0.7470023980815348, 0.7601918465227818, 0.8213429256594724, 0.8477218225419664, 0.9436450839328537, 0.8333333333333334, 0.802158273381295, 0.7577937649880095, 0.7446043165467626, 0.7122302158273381, 0.3645083932853717, 0.36810551558752996, 0.36810551558752996, 0.37290167865707435, 0.3657074340527578, 0.8105515587529976, 0.9364508393285371, 0.947242206235012, 0.9424460431654677, 0.919664268585132, 0.7350119904076738, 0.5971223021582733, 0.37290167865707435, 0.35851318944844124, 0.35611510791366907, 0.35731414868105515, 0.354916067146283, 0.3537170263788969, 0.3669064748201439, 0.7673860911270983, 0.4136690647482014, 0.4088729016786571, 0.3405275779376499, 0.34172661870503596, 0.3381294964028777, 0.3381294964028777, 0.3381294964028777, 0.3405275779376499, 0.32973621103117506, 0.328537170263789, 0.328537170263789, 0.328537170263789, 0.32973621103117506, 0.32973621103117506, 0.32973621103117506, 0.32973621103117506, 0.32973621103117506, 0.49160671462829736, 0.32973621103117506, 0.3273381294964029, 0.3273381294964029, 0.3273381294964029, 0.3273381294964029, 0.3261390887290168, 0.3273381294964029, 0.3273381294964029, 0.3273381294964029, 0.3273381294964029, 0.3261390887290168, 0.3213429256594724, 0.3213429256594724, 0.32014388489208634, 0.32014388489208634, 0.3249400479616307, 0.3213429256594724, 0.3237410071942446, 0.3237410071942446, 0.3225419664268585, 0.3225419664268585, 0.3225419664268585, 0.3261390887290168, 0.3225419664268585, 0.3237410071942446, 0.3237410071942446, 0.3237410071942446, 0.3237410071942446, 0.3213429256594724, 0.3261390887290168, 0.328537170263789, 0.33093525179856115, 0.328537170263789, 0.35731414868105515, 0.35851318944844124, 0.3333333333333333, 0.3333333333333333, 0.3345323741007194, 0.6294964028776978, 0.39568345323741005, 0.3513189448441247, 0.34532374100719426, 0.34652278177458035, 0.34532374100719426, 0.3513189448441247, 0.3513189448441247, 0.35251798561151076, 0.3489208633093525, 0.3489208633093525, 0.3501199040767386, 0.3501199040767386, 0.3501199040767386, 0.3501199040767386, 0.3501199040767386, 0.35251798561151076, 0.354916067146283, 0.354916067146283, 0.35731414868105515, 0.35731414868105515, 0.35731414868105515, 0.35731414868105515, 0.35851318944844124, 0.35851318944844124, 0.3597122302158273, 0.3597122302158273, 0.37050359712230213, 0.37410071942446044, 0.3776978417266187, 0.37889688249400477, 0.37889688249400477, 0.37889688249400477, 0.381294964028777, 0.38968824940047964, 0.3908872901678657, 0.4028776978417266, 0.41606714628297364, 0.42206235011990406, 0.42565947242206237, 0.4292565947242206, 0.43285371702637887, 0.43884892086330934, 0.44364508393285373, 0.4676258992805755, 0.4892086330935252, 0.5011990407673861, 0.5251798561151079, 0.5683453237410072, 0.5875299760191847, 0.6031175059952039, 0.6235011990407674, 0.6774580335731415, 0.7218225419664268, 0.7997601918465228], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DHFR_1.gap.json b/pfam_gap_rates/DHFR_1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..fcf1eb6e5962e222a894423c468122af1490a33b
--- /dev/null
+++ b/pfam_gap_rates/DHFR_1.gap.json
@@ -0,0 +1 @@
+{"family": "DHFR_1", "n_seqs": 1954, "length": 203, "gap_rates": [0.7277379733879222, 0.27942681678607983, 0.15148413510747186, 0.09672466734902764, 0.09211873080859775, 0.09007164790174002, 0.08853633572159672, 0.0834186284544524, 0.08034800409416581, 0.07932446264073695, 0.07881269191402251, 0.07830092118730808, 0.07164790174002048, 0.07113613101330604, 0.07062436028659161, 0.07062436028659161, 0.06806550665301944, 0.06806550665301944, 0.06806550665301944, 0.062436028659160696, 0.06141248720573183, 0.06141248720573183, 0.059877175025588536, 0.05885363357215967, 0.05834186284544524, 0.05834186284544524, 0.05834186284544524, 0.05680655066530194, 0.05680655066530194, 0.05680655066530194, 0.05680655066530194, 0.05578300921187308, 0.05578300921187308, 0.05373592630501536, 0.05015353121801433, 0.04605936540429888, 0.9334698055271239, 0.9380757420675537, 0.9385875127942682, 0.946775844421699, 0.9385875127942682, 0.9350051177072671, 0.9319344933469805, 0.045547594677584444, 0.9298874104401228, 0.9319344933469805, 0.9334698055271239, 0.9431934493346981, 0.9329580348004094, 0.9314227226202662, 0.9237461617195496, 0.0368474923234391, 0.0368474923234391, 0.03582395087001024, 0.03582395087001024, 0.030194472876151485, 0.02968270214943705, 0.02968270214943705, 0.02968270214943705, 0.02968270214943705, 0.02968270214943705, 0.02968270214943705, 0.030194472876151485, 0.030194472876151485, 0.030194472876151485, 0.7113613101330604, 0.6366427840327533, 0.5, 0.04605936540429888, 0.03428863868986694, 0.031218014329580348, 0.030706243602865915, 0.030706243602865915, 0.030194472876151485, 0.030706243602865915, 0.030194472876151485, 0.030194472876151485, 0.02968270214943705, 0.030194472876151485, 0.030706243602865915, 0.02917093142272262, 0.030194472876151485, 0.04759467758444217, 0.038894575230296824, 0.9396110542476971, 0.9073694984646878, 0.07881269191402251, 0.07727737973387923, 0.07318321392016376, 0.8408393039918116, 0.9303991811668373, 0.9498464687819856, 0.8884339815762539, 0.778403275332651, 0.0609007164790174, 0.9181166837256909, 0.0593654042988741, 0.0496417604912999, 0.04759467758444217, 0.042988741044012284, 0.04094165813715456, 0.041453428863868984, 0.038894575230296824, 0.03735926305015353, 0.03582395087001024, 0.03991811668372569, 0.04196519959058342, 0.04094165813715456, 0.8280450358239508, 0.8377686796315251, 0.9242579324462641, 0.8894575230296827, 0.8300921187308086, 0.8254861821903787, 0.0609007164790174, 0.9339815762538383, 0.08955987717502559, 0.07932446264073695, 0.0752302968270215, 0.08085977482088025, 0.0931422722620266, 0.845957011258956, 0.9396110542476971, 0.9078812691914022, 0.6054247697031729, 0.3664278403275333, 0.10388945752302968, 0.03991811668372569, 0.03582395087001024, 0.03582395087001024, 0.036335721596724664, 0.03582395087001024, 0.036335721596724664, 0.036335721596724664, 0.03582395087001024, 0.036335721596724664, 0.036335721596724664, 0.036335721596724664, 0.036335721596724664, 0.036335721596724664, 0.036335721596724664, 0.036335721596724664, 0.9119754350051177, 0.9114636642784033, 0.03735926305015353, 0.9273285568065507, 0.9273285568065507, 0.03940634595701126, 0.04094165813715456, 0.041453428863868984, 0.04196519959058342, 0.041453428863868984, 0.04247697031729785, 0.042988741044012284, 0.04350051177072672, 0.05066530194472876, 0.05373592630501536, 0.05527123848515865, 0.936028659160696, 0.054759467758444216, 0.05578300921187308, 0.05783009211873081, 0.9186284544524054, 0.05885363357215967, 0.0609007164790174, 0.062436028659160696, 0.06345957011258956, 0.06550665301944729, 0.06704196519959059, 0.08137154554759468, 0.0849539406345957, 0.09058341862845445, 0.23183213920163767, 0.14431934493346982, 0.8986693961105425, 0.12077789150460594, 0.11412487205731832, 0.11258955987717502, 0.11514841351074719, 0.11719549641760492, 0.1218014329580348, 0.12896622313203684, 0.13613101330603888, 0.14329580348004095, 0.1571136131013306, 0.1699078812691914, 0.18730808597748208, 0.5071647901740021, 0.4718526100307062, 0.30501535312180145, 0.2978505629477994, 0.28556806550665303, 0.27840327533265097, 0.27840327533265097, 0.2625383828045036, 0.2656090071647902, 0.2676560900716479, 0.2691914022517912, 0.27175025588536333, 0.27635619242579323, 0.2850562947799386, 0.3321392016376663, 0.42374616171954965], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DHHW.gap.json b/pfam_gap_rates/DHHW.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..7a3f719d2416a71a8c3fb1dd9a5c779810683e34
--- /dev/null
+++ b/pfam_gap_rates/DHHW.gap.json
@@ -0,0 +1 @@
+{"family": "DHHW", "n_seqs": 347, "length": 383, "gap_rates": [0.7089337175792507, 0.7089337175792507, 0.7060518731988472, 0.7031700288184438, 0.7031700288184438, 0.7031700288184438, 0.7031700288184438, 0.7031700288184438, 0.7031700288184438, 0.7031700288184438, 0.7031700288184438, 0.7031700288184438, 0.7031700288184438, 0.7031700288184438, 0.7031700288184438, 0.7031700288184438, 0.7031700288184438, 0.7031700288184438, 0.7031700288184438, 0.7031700288184438, 0.7031700288184438, 0.7031700288184438, 0.7031700288184438, 0.7031700288184438, 0.7031700288184438, 0.7031700288184438, 0.7031700288184438, 0.7031700288184438, 0.7031700288184438, 0.7031700288184438, 0.7031700288184438, 0.7031700288184438, 0.7031700288184438, 0.7031700288184438, 0.7031700288184438, 0.7031700288184438, 0.7031700288184438, 0.7031700288184438, 0.7031700288184438, 0.7031700288184438, 0.7060518731988472, 0.7060518731988472, 0.7089337175792507, 0.729106628242075, 0.7377521613832853, 0.7492795389048992, 0.7579250720461095, 0.7694524495677233, 0.7723342939481268, 0.7838616714697406, 0.7896253602305475, 0.7982708933717579, 0.8097982708933718, 0.8155619596541787, 0.9452449567723343, 0.8530259365994236, 0.8587896253602305, 0.861671469740634, 0.8731988472622478, 0.8818443804034583, 0.8760806916426513, 0.8760806916426513, 0.8760806916426513, 0.8731988472622478, 0.8760806916426513, 0.9048991354466859, 0.8933717579250721, 0.8904899135446686, 0.8876080691642652, 0.8760806916426513, 0.8731988472622478, 0.8731988472622478, 0.8731988472622478, 0.8703170028818443, 0.8703170028818443, 0.8760806916426513, 0.8789625360230547, 0.8731988472622478, 0.8760806916426513, 0.8760806916426513, 0.8789625360230547, 0.8847262247838616, 0.8818443804034583, 0.8789625360230547, 0.8760806916426513, 0.8731988472622478, 0.8760806916426513, 0.8674351585014409, 0.861671469740634, 0.861671469740634, 0.8559077809798271, 0.8559077809798271, 0.8587896253602305, 0.8559077809798271, 0.8559077809798271, 0.8559077809798271, 0.8530259365994236, 0.8559077809798271, 0.8559077809798271, 0.8559077809798271, 0.8587896253602305, 0.861671469740634, 0.8530259365994236, 0.8559077809798271, 0.8501440922190202, 0.8443804034582133, 0.8501440922190202, 0.8501440922190202, 0.8443804034582133, 0.8443804034582133, 0.8472622478386167, 0.8443804034582133, 0.8530259365994236, 0.8703170028818443, 0.8703170028818443, 0.861671469740634, 0.8760806916426513, 0.8559077809798271, 0.8501440922190202, 0.8357348703170029, 0.8242074927953891, 0.8242074927953891, 0.8184438040345822, 0.8155619596541787, 0.7867435158501441, 0.7723342939481268, 0.7406340057636888, 0.7146974063400576, 0.7146974063400576, 0.7060518731988472, 0.7060518731988472, 0.7118155619596542, 0.7175792507204611, 0.7002881844380403, 0.69164265129683, 0.6945244956772334, 0.6887608069164265, 0.6945244956772334, 0.6829971181556196, 0.6801152737752162, 0.6743515850144092, 0.6685878962536023, 0.6628242074927954, 0.654178674351585, 0.6512968299711815, 0.6426512968299711, 0.6397694524495677, 0.6368876080691642, 0.622478386167147, 0.6051873198847262, 0.590778097982709, 0.579250720461095, 0.5590778097982709, 0.5561959654178674, 0.5389048991354467, 0.5360230547550432, 0.5360230547550432, 0.5244956772334294, 0.5187319884726225, 0.5129682997118156, 0.5072046109510087, 0.5100864553314121, 0.515850144092219, 0.7060518731988472, 0.547550432276657, 0.4783861671469741, 0.4553314121037464, 0.9365994236311239, 0.4265129682997118, 0.42363112391930835, 0.42363112391930835, 0.40634005763688763, 0.4034582132564842, 0.38904899135446686, 0.3861671469740634, 0.3861671469740634, 0.38904899135446686, 0.45821325648414984, 0.38904899135446686, 0.3919308357348703, 0.42363112391930835, 0.38904899135446686, 0.37752161383285304, 0.37752161383285304, 0.3746397694524496, 0.37175792507204614, 0.37175792507204614, 0.37175792507204614, 0.8731988472622478, 0.3746397694524496, 0.9048991354466859, 0.49855907780979825, 0.39481268011527376, 0.38904899135446686, 0.37752161383285304, 0.3746397694524496, 0.3688760806916426, 0.3688760806916426, 0.3659942363112392, 0.3688760806916426, 0.3659942363112392, 0.3573487031700288, 0.34870317002881845, 0.345821325648415, 0.3400576368876081, 0.3400576368876081, 0.33429394812680113, 0.3400576368876081, 0.521613832853026, 0.3631123919308357, 0.33429394812680113, 0.3227665706051873, 0.3227665706051873, 0.3227665706051873, 0.3170028818443804, 0.3170028818443804, 0.31412103746397696, 0.31412103746397696, 0.31412103746397696, 0.3170028818443804, 0.3170028818443804, 0.31988472622478387, 0.31412103746397696, 0.33429394812680113, 0.3400576368876081, 0.33429394812680113, 0.33429394812680113, 0.3314121037463977, 0.2507204610951009, 0.2420749279538905, 0.2420749279538905, 0.2420749279538905, 0.2420749279538905, 0.2420749279538905, 0.2420749279538905, 0.2420749279538905, 0.2420749279538905, 0.2420749279538905, 0.2420749279538905, 0.2420749279538905, 0.23919308357348704, 0.23919308357348704, 0.23919308357348704, 0.23919308357348704, 0.2420749279538905, 0.2420749279538905, 0.2420749279538905, 0.2420749279538905, 0.24495677233429394, 0.2420749279538905, 0.24495677233429394, 0.2420749279538905, 0.2420749279538905, 0.25360230547550433, 0.27089337175792505, 0.26512968299711814, 0.2680115273775216, 0.2680115273775216, 0.28530259365994237, 0.2680115273775216, 0.2420749279538905, 0.2564841498559078, 0.25360230547550433, 0.9106628242074928, 0.2420749279538905, 0.24495677233429394, 0.2420749279538905, 0.23919308357348704, 0.9250720461095101, 0.23631123919308358, 0.9481268011527377, 0.2420749279538905, 0.9394812680115274, 0.2334293948126801, 0.2334293948126801, 0.2334293948126801, 0.23054755043227665, 0.2334293948126801, 0.2564841498559078, 0.25936599423631124, 0.2881844380403458, 0.2824207492795389, 0.3400576368876081, 0.3314121037463977, 0.3573487031700288, 0.9077809798270894, 0.34870317002881845, 0.345821325648415, 0.3659942363112392, 0.3919308357348703, 0.3256484149855908, 0.27953890489913547, 0.23919308357348704, 0.2420749279538905, 0.23054755043227665, 0.2334293948126801, 0.24495677233429394, 0.2420749279538905, 0.23631123919308358, 0.24495677233429394, 0.23631123919308358, 0.2420749279538905, 0.2507204610951009, 0.2420749279538905, 0.2420749279538905, 0.24495677233429394, 0.25360230547550433, 0.23631123919308358, 0.26512968299711814, 0.26512968299711814, 0.29394812680115273, 0.30547550432276654, 0.3112391930835735, 0.3285302593659942, 0.3314121037463977, 0.2737752161383285, 0.2737752161383285, 0.276657060518732, 0.24495677233429394, 0.23919308357348704, 0.2334293948126801, 0.2276657060518732, 0.23631123919308358, 0.24495677233429394, 0.9452449567723343, 0.2478386167146974, 0.2478386167146974, 0.24495677233429394, 0.2334293948126801, 0.23054755043227665, 0.23054755043227665, 0.2276657060518732, 0.22478386167146974, 0.2219020172910663, 0.2219020172910663, 0.22478386167146974, 0.22478386167146974, 0.2276657060518732, 0.2219020172910663, 0.2219020172910663, 0.2219020172910663, 0.22478386167146974, 0.22478386167146974, 0.2219020172910663, 0.2219020172910663, 0.2219020172910663, 0.2219020172910663, 0.2219020172910663, 0.2219020172910663, 0.5994236311239193, 0.2564841498559078, 0.2334293948126801, 0.23919308357348704, 0.2334293948126801, 0.2334293948126801, 0.2334293948126801, 0.2420749279538905, 0.22478386167146974, 0.22478386167146974, 0.22478386167146974, 0.22478386167146974, 0.22478386167146974, 0.22478386167146974, 0.22478386167146974, 0.22478386167146974, 0.22478386167146974, 0.22478386167146974, 0.22478386167146974, 0.22478386167146974, 0.22478386167146974, 0.22478386167146974, 0.22478386167146974, 0.22478386167146974, 0.22478386167146974, 0.22478386167146974, 0.2276657060518732, 0.2276657060518732, 0.2276657060518732, 0.2334293948126801, 0.2478386167146974, 0.3025936599423631, 0.39481268011527376, 0.6311239193083573], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DIE2_ALG10.gap.json b/pfam_gap_rates/DIE2_ALG10.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..1fa811273286594d57450b44cd11fa02f5c69885
--- /dev/null
+++ b/pfam_gap_rates/DIE2_ALG10.gap.json
@@ -0,0 +1 @@
+{"family": "DIE2_ALG10", "n_seqs": 331, "length": 606, "gap_rates": [0.5468277945619335, 0.3716012084592145, 0.31419939577039274, 0.29607250755287007, 0.29003021148036257, 0.26586102719033233, 0.24773413897280966, 0.24773413897280966, 0.24773413897280966, 0.24773413897280966, 0.24773413897280966, 0.24773413897280966, 0.24773413897280966, 0.24773413897280966, 0.24773413897280966, 0.24773413897280966, 0.24773413897280966, 0.24169184290030213, 0.24169184290030213, 0.23867069486404835, 0.24169184290030213, 0.24169184290030213, 0.23867069486404835, 0.23867069486404835, 0.3202416918429003, 0.25075528700906347, 0.25075528700906347, 0.24169184290030213, 0.2326283987915408, 0.2326283987915408, 0.2326283987915408, 0.2326283987915408, 0.229607250755287, 0.2326283987915408, 0.229607250755287, 0.22658610271903323, 0.229607250755287, 0.229607250755287, 0.2326283987915408, 0.2326283987915408, 0.2326283987915408, 0.229607250755287, 0.2326283987915408, 0.24773413897280966, 0.2598187311178248, 0.2598187311178248, 0.256797583081571, 0.552870090634441, 0.6404833836858006, 0.770392749244713, 0.8429003021148036, 0.8700906344410876, 0.879154078549849, 0.8610271903323263, 0.8368580060422961, 0.7250755287009063, 0.5800604229607251, 0.5287009063444109, 0.4984894259818731, 0.4773413897280967, 0.3776435045317221, 0.3021148036253776, 0.27492447129909364, 0.256797583081571, 0.2688821752265861, 0.27492447129909364, 0.2598187311178248, 0.24773413897280966, 0.24169184290030213, 0.22356495468277945, 0.22356495468277945, 0.22054380664652568, 0.22054380664652568, 0.22054380664652568, 0.22054380664652568, 0.22356495468277945, 0.22658610271903323, 0.22658610271903323, 0.7734138972809668, 0.8610271903323263, 0.770392749244713, 0.540785498489426, 0.23867069486404835, 0.23867069486404835, 0.2326283987915408, 0.229607250755287, 0.22356495468277945, 0.22658610271903323, 0.23564954682779457, 0.23867069486404835, 0.256797583081571, 0.2628398791540785, 0.27492447129909364, 0.3081570996978852, 0.3202416918429003, 0.3323262839879154, 0.3323262839879154, 0.3504531722054381, 0.38368580060422963, 0.4350453172205438, 0.3806646525679758, 0.3293051359516616, 0.2930513595166163, 0.7311178247734139, 0.8187311178247734, 0.8549848942598187, 0.8761329305135952, 0.9154078549848943, 0.9395770392749244, 0.945619335347432, 0.9425981873111783, 0.9244712990936556, 0.9093655589123867, 0.8670694864048338, 0.8398791540785498, 0.7522658610271903, 0.7250755287009063, 0.1933534743202417, 0.1903323262839879, 0.1933534743202417, 0.1933534743202417, 0.1903323262839879, 0.1903323262839879, 0.1903323262839879, 0.1903323262839879, 0.1903323262839879, 0.1903323262839879, 0.1903323262839879, 0.1903323262839879, 0.1903323262839879, 0.18731117824773413, 0.18731117824773413, 0.18731117824773413, 0.18731117824773413, 0.18731117824773413, 0.1903323262839879, 0.18731117824773413, 0.1903323262839879, 0.18731117824773413, 0.18429003021148035, 0.18429003021148035, 0.18429003021148035, 0.18429003021148035, 0.18429003021148035, 0.18429003021148035, 0.18429003021148035, 0.18429003021148035, 0.18126888217522658, 0.18126888217522658, 0.18126888217522658, 0.17522658610271905, 0.17522658610271905, 0.1782477341389728, 0.18731117824773413, 0.23867069486404835, 0.23564954682779457, 0.2326283987915408, 0.1903323262839879, 0.1903323262839879, 0.8368580060422961, 0.8549848942598187, 0.8942598187311178, 0.9244712990936556, 0.9305135951661632, 0.9123867069486404, 0.879154078549849, 0.8489425981873112, 0.8308157099697885, 0.1903323262839879, 0.22356495468277945, 0.22054380664652568, 0.1782477341389728, 0.8882175226586103, 0.8912386706948641, 0.8942598187311178, 0.9244712990936556, 0.9395770392749244, 0.9033232628398792, 0.8942598187311178, 0.8882175226586103, 0.8882175226586103, 0.1782477341389728, 0.1782477341389728, 0.1782477341389728, 0.1782477341389728, 0.18126888217522658, 0.18126888217522658, 0.18126888217522658, 0.18429003021148035, 0.18126888217522658, 0.18126888217522658, 0.18126888217522658, 0.18126888217522658, 0.18126888217522658, 0.18126888217522658, 0.18126888217522658, 0.18429003021148035, 0.18429003021148035, 0.18429003021148035, 0.8277945619335347, 0.18429003021148035, 0.18429003021148035, 0.18429003021148035, 0.18429003021148035, 0.18429003021148035, 0.18429003021148035, 0.18429003021148035, 0.18429003021148035, 0.18731117824773413, 0.24169184290030213, 0.24169184290030213, 0.2537764350453172, 0.22356495468277945, 0.22054380664652568, 0.22054380664652568, 0.22658610271903323, 0.23564954682779457, 0.23867069486404835, 0.25075528700906347, 0.256797583081571, 0.27794561933534745, 0.3413897280966767, 0.3685800604229607, 0.4169184290030212, 0.3957703927492447, 0.40181268882175225, 0.3716012084592145, 0.525679758308157, 0.5498489425981873, 0.5921450151057401, 0.6314199395770392, 0.6555891238670695, 0.676737160120846, 0.7069486404833837, 0.7190332326283988, 0.7311178247734139, 0.7341389728096677, 0.7613293051359517, 0.7673716012084593, 0.7854984894259819, 0.8066465256797583, 0.851963746223565, 0.8700906344410876, 0.8821752265861027, 0.8851963746223565, 0.8882175226586103, 0.8942598187311178, 0.9214501510574018, 0.9274924471299094, 0.9244712990936556, 0.9033232628398792, 0.8882175226586103, 0.8882175226586103, 0.8851963746223565, 0.8761329305135952, 0.8549848942598187, 0.8489425981873112, 0.7945619335347432, 0.7794561933534743, 0.7643504531722054, 0.7552870090634441, 0.7341389728096677, 0.7280966767371602, 0.7190332326283988, 0.6948640483383686, 0.6676737160120846, 0.6525679758308157, 0.6132930513595166, 0.5770392749244713, 0.540785498489426, 0.5105740181268882, 0.32326283987915405, 0.3323262839879154, 0.31722054380664655, 0.2990936555891239, 0.2688821752265861, 0.2930513595166163, 0.29003021148036257, 0.2930513595166163, 0.2628398791540785, 0.27794561933534745, 0.2930513595166163, 0.3685800604229607, 0.38368580060422963, 0.622356495468278, 0.56797583081571, 0.5468277945619335, 0.4108761329305136, 0.37462235649546827, 0.338368580060423, 0.2990936555891239, 0.9305135951661632, 0.9486404833836858, 0.9335347432024169, 0.918429003021148, 0.27794561933534745, 0.2688821752265861, 0.2537764350453172, 0.2326283987915408, 0.20241691842900303, 0.2054380664652568, 0.19637462235649547, 0.18429003021148035, 0.18429003021148035, 0.18429003021148035, 0.18126888217522658, 0.18126888217522658, 0.18429003021148035, 0.18429003021148035, 0.18429003021148035, 0.18429003021148035, 0.18429003021148035, 0.18429003021148035, 0.18429003021148035, 0.18429003021148035, 0.18731117824773413, 0.18429003021148035, 0.18429003021148035, 0.18731117824773413, 0.18731117824773413, 0.9425981873111783, 0.1903323262839879, 0.1903323262839879, 0.1903323262839879, 0.18731117824773413, 0.18429003021148035, 0.18126888217522658, 0.18731117824773413, 0.1903323262839879, 0.1903323262839879, 0.1903323262839879, 0.1903323262839879, 0.1903323262839879, 0.1933534743202417, 0.1933534743202417, 0.1933534743202417, 0.1933534743202417, 0.19637462235649547, 0.19637462235649547, 0.19637462235649547, 0.19637462235649547, 0.19637462235649547, 0.19637462235649547, 0.19637462235649547, 0.19637462235649547, 0.19637462235649547, 0.19939577039274925, 0.19637462235649547, 0.19637462235649547, 0.19637462235649547, 0.20241691842900303, 0.2054380664652568, 0.19637462235649547, 0.19637462235649547, 0.19637462235649547, 0.19637462235649547, 0.21148036253776434, 0.2537764350453172, 0.24169184290030213, 0.45317220543806647, 0.7371601208459214, 0.7643504531722054, 0.797583081570997, 0.8187311178247734, 0.8549848942598187, 0.8610271903323263, 0.8700906344410876, 0.8972809667673716, 0.9063444108761329, 0.9214501510574018, 0.9335347432024169, 0.9395770392749244, 0.9425981873111783, 0.9425981873111783, 0.945619335347432, 0.945619335347432, 0.9486404833836858, 0.9486404833836858, 0.945619335347432, 0.9425981873111783, 0.9425981873111783, 0.9395770392749244, 0.9335347432024169, 0.9274924471299094, 0.9123867069486404, 0.9063444108761329, 0.8851963746223565, 0.8640483383685801, 0.8580060422960725, 0.8368580060422961, 0.8096676737160121, 0.7885196374622356, 0.7522658610271903, 0.6888217522658611, 0.42900302114803623, 0.22054380664652568, 0.3716012084592145, 0.3595166163141994, 0.3595166163141994, 0.35347432024169184, 0.32628398791540786, 0.33534743202416917, 0.3293051359516616, 0.32628398791540786, 0.338368580060423, 0.3504531722054381, 0.3564954682779456, 0.3716012084592145, 0.3595166163141994, 0.2084592145015106, 0.5861027190332326, 0.6404833836858006, 0.770392749244713, 0.8126888217522659, 0.8549848942598187, 0.8882175226586103, 0.9093655589123867, 0.9154078549848943, 0.9425981873111783, 0.9274924471299094, 0.9154078549848943, 0.8972809667673716, 0.8610271903323263, 0.824773413897281, 0.7794561933534743, 0.7522658610271903, 0.6193353474320241, 0.5558912386706949, 0.2054380664652568, 0.2084592145015106, 0.21148036253776434, 0.21450151057401812, 0.21148036253776434, 0.21148036253776434, 0.21148036253776434, 0.21450151057401812, 0.21148036253776434, 0.2084592145015106, 0.2084592145015106, 0.2084592145015106, 0.2084592145015106, 0.21148036253776434, 0.21148036253776434, 0.21148036253776434, 0.21148036253776434, 0.21148036253776434, 0.21148036253776434, 0.2175226586102719, 0.22054380664652568, 0.22054380664652568, 0.2175226586102719, 0.21148036253776434, 0.21450151057401812, 0.2054380664652568, 0.21148036253776434, 0.19939577039274925, 0.19637462235649547, 0.19637462235649547, 0.19939577039274925, 0.19939577039274925, 0.20241691842900303, 0.19939577039274925, 0.256797583081571, 0.19939577039274925, 0.21148036253776434, 0.2054380664652568, 0.2598187311178248, 0.20241691842900303, 0.20241691842900303, 0.19939577039274925, 0.21148036253776434, 0.2054380664652568, 0.21148036253776434, 0.2054380664652568, 0.2054380664652568, 0.20241691842900303, 0.2054380664652568, 0.2054380664652568, 0.2175226586102719, 0.2054380664652568, 0.20241691842900303, 0.2084592145015106, 0.2084592145015106, 0.2054380664652568, 0.2084592145015106, 0.2084592145015106, 0.20241691842900303, 0.20241691842900303, 0.2054380664652568, 0.3474320241691843, 0.24169184290030213, 0.2326283987915408, 0.229607250755287, 0.24169184290030213, 0.7220543806646526, 0.7311178247734139, 0.7643504531722054, 0.7764350453172205, 0.7854984894259819, 0.7854984894259819, 0.7854984894259819, 0.7885196374622356, 0.7915407854984894, 0.8006042296072508, 0.8308157099697885, 0.8338368580060423, 0.851963746223565, 0.8580060422960725, 0.8640483383685801, 0.8731117824773413, 0.8731117824773413, 0.8731117824773413, 0.879154078549849, 0.8821752265861027, 0.8882175226586103, 0.8972809667673716, 0.9033232628398792, 0.9033232628398792, 0.9093655589123867, 0.9123867069486404, 0.9154078549848943, 0.9244712990936556, 0.9244712990936556, 0.9274924471299094, 0.9274924471299094, 0.9305135951661632, 0.9305135951661632, 0.9365558912386707, 0.9425981873111783, 0.945619335347432, 0.9486404833836858, 0.9486404833836858, 0.9486404833836858, 0.945619335347432, 0.9425981873111783, 0.9395770392749244, 0.9305135951661632, 0.9305135951661632, 0.9305135951661632, 0.9274924471299094, 0.9244712990936556, 0.9244712990936556, 0.9244712990936556, 0.9154078549848943, 0.9123867069486404, 0.9063444108761329, 0.9033232628398792, 0.9033232628398792, 0.8972809667673716, 0.8821752265861027, 0.879154078549849, 0.8761329305135952, 0.8731117824773413, 0.8731117824773413, 0.8670694864048338, 0.8580060422960725, 0.8549848942598187, 0.8398791540785498, 0.8338368580060423, 0.8217522658610272, 0.797583081570997, 0.7915407854984894, 0.7885196374622356, 0.7854984894259819, 0.7854984894259819, 0.7824773413897281, 0.7734138972809668, 0.7552870090634441, 0.7311178247734139, 0.6978851963746223, 0.6374622356495468, 0.24773413897280966, 0.21450151057401812, 0.2054380664652568, 0.2084592145015106, 0.2084592145015106, 0.2084592145015106, 0.2084592145015106, 0.21148036253776434, 0.2084592145015106, 0.21148036253776434, 0.21148036253776434, 0.21148036253776434, 0.2084592145015106, 0.2084592145015106, 0.2084592145015106, 0.2084592145015106, 0.2084592145015106, 0.2084592145015106, 0.21148036253776434, 0.21148036253776434, 0.21148036253776434, 0.21450151057401812, 0.2175226586102719, 0.2175226586102719, 0.2175226586102719, 0.2175226586102719, 0.22054380664652568, 0.22054380664652568, 0.22054380664652568, 0.22356495468277945, 0.229607250755287, 0.2326283987915408, 0.23564954682779457, 0.2719033232628399, 0.4622356495468278], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DIM1.gap.json b/pfam_gap_rates/DIM1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b7ba4a7b5942bd8600b40fb6594e325322f939c7
--- /dev/null
+++ b/pfam_gap_rates/DIM1.gap.json
@@ -0,0 +1 @@
+{"family": "DIM1", "n_seqs": 437, "length": 136, "gap_rates": [0.2585812356979405, 0.17848970251716248, 0.17162471395881007, 0.16475972540045766, 0.16247139588100687, 0.16018306636155608, 0.15560640732265446, 0.15560640732265446, 0.15331807780320367, 0.14874141876430205, 0.14874141876430205, 0.14874141876430205, 0.14416475972540047, 0.14416475972540047, 0.14187643020594964, 0.14187643020594964, 0.13729977116704806, 0.13272311212814644, 0.13043478260869565, 0.13043478260869565, 0.13043478260869565, 0.13043478260869565, 0.13043478260869565, 0.12814645308924486, 0.12814645308924486, 0.12814645308924486, 0.12585812356979406, 0.12585812356979406, 0.12356979405034325, 0.12356979405034325, 0.12356979405034325, 0.12356979405034325, 0.11899313501144165, 0.11441647597254005, 0.11212814645308924, 0.10983981693363844, 0.09839816933638444, 0.07322654462242563, 0.07322654462242563, 0.07322654462242563, 0.06864988558352403, 0.057208237986270026, 0.057208237986270026, 0.059496567505720827, 0.059496567505720827, 0.06178489702517163, 0.06407322654462243, 0.06178489702517163, 0.06407322654462243, 0.06407322654462243, 0.06407322654462243, 0.06178489702517163, 0.06178489702517163, 0.06178489702517163, 0.06407322654462243, 0.06407322654462243, 0.06407322654462243, 0.06407322654462243, 0.06178489702517163, 0.06636155606407322, 0.06407322654462243, 0.9382151029748284, 0.9382151029748284, 0.06178489702517163, 0.06178489702517163, 0.06178489702517163, 0.06178489702517163, 0.06178489702517163, 0.06178489702517163, 0.06178489702517163, 0.05263157894736842, 0.05491990846681922, 0.05263157894736842, 0.05491990846681922, 0.05263157894736842, 0.8306636155606407, 0.05491990846681922, 0.05491990846681922, 0.05491990846681922, 0.05491990846681922, 0.05491990846681922, 0.05491990846681922, 0.06178489702517163, 0.05491990846681922, 0.17391304347826086, 0.05263157894736842, 0.04576659038901602, 0.05034324942791762, 0.05491990846681922, 0.05263157894736842, 0.04576659038901602, 0.04805491990846682, 0.05034324942791762, 0.05034324942791762, 0.04576659038901602, 0.04805491990846682, 0.04576659038901602, 0.04576659038901602, 0.04576659038901602, 0.05034324942791762, 0.05034324942791762, 0.05034324942791762, 0.05034324942791762, 0.05034324942791762, 0.05263157894736842, 0.05491990846681922, 0.05491990846681922, 0.05491990846681922, 0.059496567505720827, 0.05263157894736842, 0.05491990846681922, 0.059496567505720827, 0.05491990846681922, 0.05491990846681922, 0.05491990846681922, 0.05491990846681922, 0.05491990846681922, 0.057208237986270026, 0.06178489702517163, 0.06636155606407322, 0.06636155606407322, 0.06636155606407322, 0.06864988558352403, 0.06864988558352403, 0.06864988558352403, 0.07093821510297482, 0.08009153318077804, 0.08466819221967964, 0.09382151029748284, 0.09839816933638444, 0.10297482837528604, 0.11899313501144165, 0.12814645308924486, 0.13043478260869565, 0.16475972540045766, 0.2585812356979405], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DIX.gap.json b/pfam_gap_rates/DIX.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c266c70dda70c5182318213521790c71da0425d6
--- /dev/null
+++ b/pfam_gap_rates/DIX.gap.json
@@ -0,0 +1 @@
+{"family": "DIX", "n_seqs": 312, "length": 90, "gap_rates": [0.9423076923076923, 0.41346153846153844, 0.2467948717948718, 0.22435897435897437, 0.1955128205128205, 0.1762820512820513, 0.16025641025641027, 0.15705128205128205, 0.14743589743589744, 0.9326923076923077, 0.9102564102564102, 0.11858974358974358, 0.10897435897435898, 0.1346153846153846, 0.11538461538461539, 0.10256410256410256, 0.9294871794871795, 0.9294871794871795, 0.09615384615384616, 0.08974358974358974, 0.08974358974358974, 0.08974358974358974, 0.08974358974358974, 0.08974358974358974, 0.08653846153846154, 0.08653846153846154, 0.08653846153846154, 0.41346153846153844, 0.3717948717948718, 0.08012820512820513, 0.08012820512820513, 0.08012820512820513, 0.08012820512820513, 0.08012820512820513, 0.08012820512820513, 0.08012820512820513, 0.08012820512820513, 0.08012820512820513, 0.08012820512820513, 0.07692307692307693, 0.08012820512820513, 0.9198717948717948, 0.8461538461538461, 0.08012820512820513, 0.07692307692307693, 0.34294871794871795, 0.07371794871794872, 0.9391025641025641, 0.0673076923076923, 0.0641025641025641, 0.0673076923076923, 0.0673076923076923, 0.0673076923076923, 0.07051282051282051, 0.07051282051282051, 0.0641025641025641, 0.0641025641025641, 0.0673076923076923, 0.0641025641025641, 0.1346153846153846, 0.5032051282051282, 0.6121794871794872, 0.04807692307692308, 0.035256410256410256, 0.03205128205128205, 0.03205128205128205, 0.035256410256410256, 0.035256410256410256, 0.035256410256410256, 0.035256410256410256, 0.038461538461538464, 0.041666666666666664, 0.04487179487179487, 0.041666666666666664, 0.04487179487179487, 0.04487179487179487, 0.057692307692307696, 0.8942307692307693, 0.060897435897435896, 0.060897435897435896, 0.0641025641025641, 0.0641025641025641, 0.0673076923076923, 0.0673076923076923, 0.0673076923076923, 0.0673076923076923, 0.10256410256410256, 0.18269230769230768, 0.34294871794871795, 0.8237179487179487], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DMAP_binding.gap.json b/pfam_gap_rates/DMAP_binding.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d6248aaf6e0073f778a6996c8bbe11b88945ce03
--- /dev/null
+++ b/pfam_gap_rates/DMAP_binding.gap.json
@@ -0,0 +1 @@
+{"family": "DMAP_binding", "n_seqs": 211, "length": 135, "gap_rates": [0.8009478672985783, 0.5781990521327014, 0.4928909952606635, 0.46919431279620855, 0.4549763033175355, 0.41232227488151657, 0.24644549763033174, 0.23696682464454977, 0.23222748815165878, 0.20853080568720378, 0.2037914691943128, 0.2037914691943128, 0.2037914691943128, 0.2037914691943128, 0.1990521327014218, 0.1895734597156398, 0.1895734597156398, 0.1895734597156398, 0.1895734597156398, 0.20853080568720378, 0.18009478672985782, 0.15165876777251186, 0.13270142180094788, 0.07109004739336493, 0.07109004739336493, 0.07109004739336493, 0.06635071090047394, 0.06635071090047394, 0.06635071090047394, 0.06635071090047394, 0.06635071090047394, 0.06635071090047394, 0.06635071090047394, 0.06635071090047394, 0.06635071090047394, 0.06635071090047394, 0.06635071090047394, 0.06635071090047394, 0.06635071090047394, 0.07109004739336493, 0.07582938388625593, 0.26066350710900477, 0.5924170616113744, 0.6729857819905213, 0.6966824644549763, 0.8246445497630331, 0.8530805687203792, 0.8767772511848341, 0.9004739336492891, 0.919431279620853, 0.9289099526066351, 0.9383886255924171, 0.9289099526066351, 0.919431279620853, 0.8957345971563981, 0.8672985781990521, 0.8388625592417062, 0.7962085308056872, 0.6824644549763034, 0.6398104265402843, 0.5592417061611374, 0.3127962085308057, 0.4265402843601896, 0.4028436018957346, 0.35545023696682465, 0.3412322274881517, 0.3175355450236967, 0.8009478672985783, 0.943127962085308, 0.6018957345971564, 0.36018957345971564, 0.36018957345971564, 0.38388625592417064, 0.5971563981042654, 0.4028436018957346, 0.3933649289099526, 0.6777251184834123, 0.4075829383886256, 0.3933649289099526, 0.38388625592417064, 0.3791469194312796, 0.2890995260663507, 0.2938388625592417, 0.2890995260663507, 0.2843601895734597, 0.2985781990521327, 0.3127962085308057, 0.3175355450236967, 0.3459715639810427, 0.5876777251184834, 0.3886255924170616, 0.4028436018957346, 0.41706161137440756, 0.4075829383886256, 0.43601895734597157, 0.4312796208530806, 0.4265402843601896, 0.4312796208530806, 0.44075829383886256, 0.8151658767772512, 0.45023696682464454, 0.4549763033175355, 0.4549763033175355, 0.4597156398104265, 0.46445497630331756, 0.46445497630331756, 0.46445497630331756, 0.46445497630331756, 0.4786729857819905, 0.4834123222748815, 0.4881516587677725, 0.4881516587677725, 0.4881516587677725, 0.4881516587677725, 0.4928909952606635, 0.4928909952606635, 0.4928909952606635, 0.5023696682464455, 0.5023696682464455, 0.5165876777251185, 0.5308056872037915, 0.5450236966824644, 0.5545023696682464, 0.6066350710900474, 0.6113744075829384, 0.5734597156398105, 0.6161137440758294, 0.6255924170616114, 0.6303317535545023, 0.6398104265402843, 0.6445497630331753, 0.6635071090047393, 0.6824644549763034, 0.7109004739336493, 0.909952606635071], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DNA_gyraseA_C.gap.json b/pfam_gap_rates/DNA_gyraseA_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e45e4a4cf935a12bbe8135256316ce7cb9a93948
--- /dev/null
+++ b/pfam_gap_rates/DNA_gyraseA_C.gap.json
@@ -0,0 +1 @@
+{"family": "DNA_gyraseA_C", "n_seqs": 5000, "length": 52, "gap_rates": [0.6238, 0.2324, 0.0884, 0.0546, 0.038, 0.0334, 0.028, 0.0178, 0.0134, 0.0112, 0.0096, 0.0072, 0.0062, 0.0062, 0.0064, 0.0064, 0.008, 0.0086, 0.0086, 0.0068, 0.0166, 0.014, 0.0134, 0.015, 0.053, 0.0536, 0.1934, 0.1576, 0.0318, 0.025, 0.029, 0.03, 0.0332, 0.8354, 0.8402, 0.8184, 0.038, 0.046, 0.0646, 0.062, 0.0674, 0.8248, 0.0806, 0.0944, 0.1, 0.1288, 0.1462, 0.1686, 0.2156, 0.3188, 0.4432, 0.855], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DNA_pol3_beta_2.gap.json b/pfam_gap_rates/DNA_pol3_beta_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..cc437e80fd1440fa81bd26c032c03d5b2f6a10fc
--- /dev/null
+++ b/pfam_gap_rates/DNA_pol3_beta_2.gap.json
@@ -0,0 +1 @@
+{"family": "DNA_pol3_beta_2", "n_seqs": 2400, "length": 129, "gap_rates": [0.8841666666666667, 0.21708333333333332, 0.14625, 0.09958333333333333, 0.06041666666666667, 0.03375, 0.024583333333333332, 0.022083333333333333, 0.020833333333333332, 0.019166666666666665, 0.01875, 0.017083333333333332, 0.01625, 0.015416666666666667, 0.015416666666666667, 0.014166666666666666, 0.01375, 0.012916666666666667, 0.010833333333333334, 0.010833333333333334, 0.01, 0.009583333333333333, 0.010416666666666666, 0.009583333333333333, 0.009583333333333333, 0.01, 0.008333333333333333, 0.007916666666666667, 0.007916666666666667, 0.007916666666666667, 0.007916666666666667, 0.007916666666666667, 0.00875, 0.008333333333333333, 0.009583333333333333, 0.01, 0.008333333333333333, 0.8854166666666666, 0.9095833333333333, 0.895, 0.8629166666666667, 0.00875, 0.008333333333333333, 0.00875, 0.008333333333333333, 0.007916666666666667, 0.007916666666666667, 0.007916666666666667, 0.007916666666666667, 0.007916666666666667, 0.00875, 0.00875, 0.008333333333333333, 0.03833333333333333, 0.01625, 0.01125, 0.010833333333333334, 0.0125, 0.014166666666666666, 0.015416666666666667, 0.015833333333333335, 0.013333333333333334, 0.016666666666666666, 0.015833333333333335, 0.019166666666666665, 0.3104166666666667, 0.9358333333333333, 0.77625, 0.17958333333333334, 0.029166666666666667, 0.015, 0.0125, 0.0125, 0.0125, 0.012083333333333333, 0.012916666666666667, 0.01375, 0.013333333333333334, 0.013333333333333334, 0.01375, 0.013333333333333334, 0.012916666666666667, 0.017083333333333332, 0.018333333333333333, 0.015416666666666667, 0.015833333333333335, 0.015833333333333335, 0.01625, 0.9283333333333333, 0.7995833333333333, 0.2675, 0.06291666666666666, 0.03125, 0.018333333333333333, 0.018333333333333333, 0.018333333333333333, 0.017083333333333332, 0.017916666666666668, 0.018333333333333333, 0.0175, 0.8504166666666667, 0.9120833333333334, 0.9345833333333333, 0.9041666666666667, 0.8458333333333333, 0.018333333333333333, 0.018333333333333333, 0.01875, 0.019583333333333335, 0.019583333333333335, 0.019583333333333335, 0.019583333333333335, 0.02, 0.021666666666666667, 0.020833333333333332, 0.021666666666666667, 0.0225, 0.02375, 0.02375, 0.024166666666666666, 0.025, 0.025, 0.025, 0.027083333333333334, 0.03, 0.03166666666666667, 0.03333333333333333, 0.15708333333333332, 0.2604166666666667], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DNA_pol3_gamma3.gap.json b/pfam_gap_rates/DNA_pol3_gamma3.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..130c1025088d36a6f8af341ece664cfa37a32ca4
--- /dev/null
+++ b/pfam_gap_rates/DNA_pol3_gamma3.gap.json
@@ -0,0 +1 @@
+{"family": "DNA_pol3_gamma3", "n_seqs": 1873, "length": 146, "gap_rates": [0.6999466097170315, 0.39348638547784304, 0.27869727709556863, 0.18686599038974908, 0.15002669514148426, 0.1211959423384944, 0.1009076348104645, 0.08809396689802455, 0.07634810464495462, 0.060864922584089695, 0.05499199145755473, 0.04431393486385478, 0.029364655632674853, 0.02402562733582488, 0.02189001601708489, 0.017084890549919914, 0.013347570742124934, 0.009610250934329953, 0.009610250934329953, 0.007474639615589963, 0.006406833956219968, 0.0058729311265349705, 0.0058729311265349705, 0.0058729311265349705, 0.0058729311265349705, 0.004271222637479978, 0.004271222637479978, 0.004271222637479978, 0.004271222637479978, 0.004271222637479978, 0.004271222637479978, 0.0037373198077949813, 0.0037373198077949813, 0.0037373198077949813, 0.0037373198077949813, 0.0037373198077949813, 0.0037373198077949813, 0.0037373198077949813, 0.0037373198077949813, 0.0037373198077949813, 0.003203416978109984, 0.0026695141484249867, 0.0026695141484249867, 0.004805125467164976, 0.003203416978109984, 0.0026695141484249867, 0.002135611318739989, 0.001601708489054992, 0.001601708489054992, 0.001601708489054992, 0.0010678056593699946, 0.0010678056593699946, 0.0010678056593699946, 0.0010678056593699946, 0.0010678056593699946, 0.001601708489054992, 0.001601708489054992, 0.001601708489054992, 0.002135611318739989, 0.0026695141484249867, 0.005339028296849973, 0.007474639615589963, 0.014415376401494928, 0.01868659903897491, 0.0202883075280299, 0.020822210357714897, 0.0400427122263748, 0.030966364121729845, 0.9097704217832354, 0.10250934329951948, 0.1793913507741591, 0.08489054991991457, 0.07154297917778964, 0.1601708489054992, 0.22851041110517886, 0.24719701014415377, 0.9006940736785904, 0.8809396689802456, 0.1612386545648692, 0.09289909236518953, 0.05872931126534971, 0.04805125467164976, 0.046983449012279764, 0.044847837693539776, 0.04271222637479979, 0.043246129204484784, 0.043246129204484784, 0.04217832354511479, 0.04378003203416978, 0.05445808862786973, 0.04965296316070475, 0.04805125467164976, 0.05018686599038975, 0.04538174052322477, 0.043246129204484784, 0.043246129204484784, 0.04431393486385478, 0.044847837693539776, 0.04538174052322477, 0.04965296316070475, 0.046983449012279764, 0.048585157501334755, 0.05285638013881474, 0.050720768820074744, 0.05232247730912974, 0.053390282968499736, 0.055525894287239724, 0.055525894287239724, 0.05499199145755473, 0.055525894287239724, 0.053390282968499736, 0.05392418579818473, 0.053390282968499736, 0.053390282968499736, 0.05499199145755473, 0.057127602776294716, 0.057127602776294716, 0.05819540843566471, 0.05819540843566471, 0.0597971169247197, 0.0597971169247197, 0.060864922584089695, 0.06193272824345969, 0.062466631073144686, 0.06460224239188468, 0.06460224239188468, 0.06940736785904965, 0.07528029898558462, 0.08862786972770956, 0.10250934329951948, 0.1206620395088094, 0.1809930592632141, 0.4810464495461826, 0.5499199145755472, 0.6097170315002669, 0.6444207154297917, 0.589428723972237, 0.6316070475173519, 0.6855312333155366, 0.7277095568606513, 0.7656166577682861, 0.804591564335291, 0.8238120662039509, 0.8489054991991457, 0.8766684463427656, 0.9273892151628403], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DNA_pol_B_palm.gap.json b/pfam_gap_rates/DNA_pol_B_palm.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ad74f34f9f94abd0d3699f5b819981fe9d512434
--- /dev/null
+++ b/pfam_gap_rates/DNA_pol_B_palm.gap.json
@@ -0,0 +1 @@
+{"family": "DNA_pol_B_palm", "n_seqs": 489, "length": 175, "gap_rates": [0.37014314928425357, 0.2392638036809816, 0.22085889570552147, 0.17586912065439672, 0.15132924335378323, 0.1329243353783231, 0.12678936605316973, 0.12474437627811862, 0.11042944785276074, 0.09611451942740286, 0.08793456032719836, 0.08384458077709611, 0.07566462167689161, 0.0736196319018405, 0.06748466257668712, 0.06339468302658487, 0.06748466257668712, 0.06339468302658487, 0.06339468302658487, 0.05521472392638037, 0.053169734151329244, 0.04703476482617587, 0.04703476482617587, 0.04294478527607362, 0.9100204498977505, 0.9386503067484663, 0.9222903885480572, 0.8711656441717791, 0.03680981595092025, 0.026584867075664622, 0.022494887525562373, 0.022494887525562373, 0.022494887525562373, 0.018404907975460124, 0.02044989775051125, 0.018404907975460124, 0.018404907975460124, 0.018404907975460124, 0.016359918200409, 0.014314928425357873, 0.014314928425357873, 0.014314928425357873, 0.016359918200409, 0.016359918200409, 0.014314928425357873, 0.014314928425357873, 0.012269938650306749, 0.012269938650306749, 0.012269938650306749, 0.010224948875255624, 0.010224948875255624, 0.012269938650306749, 0.012269938650306749, 0.014314928425357873, 0.014314928425357873, 0.016359918200409, 0.02044989775051125, 0.028629856850715747, 0.5603271983640081, 0.9120654396728016, 0.9243353783231084, 0.901840490797546, 0.6462167689161554, 0.6032719836400818, 0.5378323108384458, 0.15337423312883436, 0.1083844580777096, 0.1083844580777096, 0.10633946830265849, 0.10633946830265849, 0.10633946830265849, 0.11042944785276074, 0.10633946830265849, 0.11451942740286299, 0.11451942740286299, 0.12269938650306748, 0.12883435582822086, 0.130879345603272, 0.13496932515337423, 0.1554192229038855, 0.14314928425357873, 0.1411042944785276, 0.14519427402862986, 0.1656441717791411, 0.18609406952965235, 0.19222903885480572, 0.20040899795501022, 0.8179959100204499, 0.8282208588957055, 0.8466257668711656, 0.901840490797546, 0.9161554192229039, 0.901840490797546, 0.8936605316973415, 0.8343558282208589, 0.8179959100204499, 0.8077709611451943, 0.21063394683026584, 0.28016359918200406, 0.2310838445807771, 0.6012269938650306, 0.621676891615542, 0.7770961145194274, 0.8629856850715747, 0.9304703476482618, 0.9468302658486708, 0.8813905930470347, 0.8323108384458078, 0.6993865030674846, 0.6094069529652352, 0.5725971370143149, 0.2556237218813906, 0.26380368098159507, 0.25766871165644173, 0.25971370143149286, 0.2719836400817996, 0.27607361963190186, 0.2719836400817996, 0.26789366053169733, 0.26993865030674846, 0.26993865030674846, 0.2719836400817996, 0.2719836400817996, 0.591002044989775, 0.721881390593047, 0.7259713701431493, 0.7423312883435583, 0.7648261758691206, 0.7811860940695297, 0.803680981595092, 0.8261758691206544, 0.8404907975460123, 0.8670756646216768, 0.8793456032719836, 0.8977505112474438, 0.9120654396728016, 0.9243353783231084, 0.9304703476482618, 0.9406952965235174, 0.9447852760736196, 0.9488752556237219, 0.9427402862985685, 0.934560327198364, 0.9304703476482618, 0.918200408997955, 0.9059304703476483, 0.885480572597137, 0.8732106339468303, 0.852760736196319, 0.8261758691206544, 0.8139059304703476, 0.8016359918200409, 0.7770961145194274, 0.754601226993865, 0.7280163599182005, 0.7239263803680982, 0.721881390593047, 0.40286298568507156, 0.9366053169734151, 0.9038854805725971, 0.5398773006134969, 0.5112474437627812, 0.26789366053169733, 0.26380368098159507, 0.26380368098159507, 0.26380368098159507, 0.26380368098159507, 0.26380368098159507, 0.2658486707566462, 0.2658486707566462, 0.27607361963190186, 0.2883435582822086, 0.3394683026584867, 0.36400817995910023, 0.8977505112474438], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DNA_pol_alpha_N.gap.json b/pfam_gap_rates/DNA_pol_alpha_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f65716d9549c3413c0020ef63029f96c25818508
--- /dev/null
+++ b/pfam_gap_rates/DNA_pol_alpha_N.gap.json
@@ -0,0 +1 @@
+{"family": "DNA_pol_alpha_N", "n_seqs": 258, "length": 71, "gap_rates": [0.27906976744186046, 0.10852713178294573, 0.07364341085271318, 0.06201550387596899, 0.06201550387596899, 0.05813953488372093, 0.06201550387596899, 0.05813953488372093, 0.05813953488372093, 0.06201550387596899, 0.16279069767441862, 0.10077519379844961, 0.08139534883720931, 0.06201550387596899, 0.08139534883720931, 0.13953488372093023, 0.3643410852713178, 0.3023255813953488, 0.9263565891472868, 0.9069767441860465, 0.16666666666666666, 0.1511627906976744, 0.07751937984496124, 0.8062015503875969, 0.031007751937984496, 0.015503875968992248, 0.011627906976744186, 0.011627906976744186, 0.011627906976744186, 0.011627906976744186, 0.011627906976744186, 0.011627906976744186, 0.011627906976744186, 0.007751937984496124, 0.007751937984496124, 0.011627906976744186, 0.015503875968992248, 0.011627906976744186, 0.015503875968992248, 0.015503875968992248, 0.01937984496124031, 0.01937984496124031, 0.031007751937984496, 0.027131782945736434, 0.015503875968992248, 0.011627906976744186, 0.0, 0.0, 0.35271317829457366, 0.8875968992248062, 0.007751937984496124, 0.003875968992248062, 0.003875968992248062, 0.015503875968992248, 0.01937984496124031, 0.023255813953488372, 0.05813953488372093, 0.03875968992248062, 0.03875968992248062, 0.05813953488372093, 0.050387596899224806, 0.050387596899224806, 0.05813953488372093, 0.06201550387596899, 0.06976744186046512, 0.06976744186046512, 0.8875968992248062, 0.06976744186046512, 0.08914728682170543, 0.13953488372093023, 0.35658914728682173], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DNA_primase_S.gap.json b/pfam_gap_rates/DNA_primase_S.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..369eb4824e38953bc690f2ea8aa3866dd6a56a96
--- /dev/null
+++ b/pfam_gap_rates/DNA_primase_S.gap.json
@@ -0,0 +1 @@
+{"family": "DNA_primase_S", "n_seqs": 497, "length": 292, "gap_rates": [0.22736418511066397, 0.19114688128772636, 0.16297786720321933, 0.16297786720321933, 0.158953722334004, 0.158953722334004, 0.158953722334004, 0.158953722334004, 0.158953722334004, 0.15694164989939638, 0.358148893360161, 0.3420523138832998, 0.2977867203219316, 0.289738430583501, 0.23742454728370221, 0.22535211267605634, 0.23943661971830985, 0.21730382293762576, 0.2052313883299799, 0.20321931589537223, 0.1891348088531187, 0.18712273641851107, 0.17706237424547283, 0.1750503018108652, 0.1227364185110664, 0.10865191146881288, 0.10462776659959759, 0.09054325955734406, 0.09054325955734406, 0.09054325955734406, 0.08853118712273642, 0.08249496981891348, 0.08048289738430583, 0.07847082494969819, 0.07042253521126761, 0.08651911468812877, 0.09859154929577464, 0.06841046277665996, 0.06639839034205232, 0.16700201207243462, 0.06438631790744467, 0.06438631790744467, 0.06438631790744467, 0.06237424547283702, 0.06237424547283702, 0.06237424547283702, 0.9054325955734407, 0.9014084507042254, 0.1529175050301811, 0.06841046277665996, 0.06639839034205232, 0.06639839034205232, 0.06639839034205232, 0.06639839034205232, 0.06841046277665996, 0.06841046277665996, 0.06841046277665996, 0.07847082494969819, 0.07243460764587525, 0.06438631790744467, 0.06438631790744467, 0.06438631790744467, 0.06438631790744467, 0.06438631790744467, 0.06438631790744467, 0.06639839034205232, 0.06639839034205232, 0.0744466800804829, 0.07042253521126761, 0.06438631790744467, 0.060362173038229376, 0.060362173038229376, 0.060362173038229376, 0.06237424547283702, 0.060362173038229376, 0.06237424547283702, 0.06237424547283702, 0.06237424547283702, 0.06237424547283702, 0.06841046277665996, 0.06841046277665996, 0.1448692152917505, 0.9456740442655935, 0.15090543259557343, 0.16498993963782696, 0.16096579476861167, 0.16297786720321933, 0.17706237424547283, 0.24748490945674045, 0.2635814889336016, 0.27565392354124746, 0.289738430583501, 0.3038229376257545, 0.3319919517102616, 0.613682092555332, 0.7987927565392354, 0.869215291750503, 0.903420523138833, 0.9175050301810865, 0.9295774647887324, 0.93158953722334, 0.9356136820925554, 0.9416498993963782, 0.9456740442655935, 0.9496981891348089, 0.9436619718309859, 0.937625754527163, 0.9356136820925554, 0.93158953722334, 0.9255533199195171, 0.9094567404426559, 0.8913480885311871, 0.8531187122736419, 0.7484909456740443, 0.386317907444668, 0.30985915492957744, 0.29577464788732394, 0.2837022132796781, 0.2716297786720322, 0.2535211267605634, 0.2414486921529175, 0.18309859154929578, 0.23340040241448692, 0.22334004024144868, 0.2193158953722334, 0.2193158953722334, 0.2052313883299799, 0.19718309859154928, 0.19517102615694165, 0.193158953722334, 0.19718309859154928, 0.9094567404426559, 0.7525150905432596, 0.21730382293762576, 0.2112676056338028, 0.20724346076458752, 0.2052313883299799, 0.2112676056338028, 0.20925553319919518, 0.20925553319919518, 0.22736418511066397, 0.22736418511066397, 0.23138832997987926, 0.22535211267605634, 0.24949698189134809, 0.22334004024144868, 0.2595573440643863, 0.22937625754527163, 0.24949698189134809, 0.2595573440643863, 0.2595573440643863, 0.2193158953722334, 0.2595573440643863, 0.323943661971831, 0.8108651911468813, 0.8853118712273642, 0.8993963782696177, 0.9154929577464789, 0.9295774647887324, 0.9456740442655935, 0.9396378269617707, 0.9255533199195171, 0.9074446680080482, 0.8913480885311871, 0.8672032193158954, 0.7605633802816901, 0.27364185110663986, 0.23943661971830985, 0.09859154929577464, 0.11267605633802817, 0.10663983903420524, 0.10462776659959759, 0.10462776659959759, 0.10462776659959759, 0.10462776659959759, 0.10865191146881288, 0.10865191146881288, 0.10462776659959759, 0.10462776659959759, 0.10865191146881288, 0.11066398390342053, 0.11267605633802817, 0.11468812877263582, 0.11468812877263582, 0.7424547283702213, 0.8329979879275654, 0.869215291750503, 0.9074446680080482, 0.9235412474849095, 0.9356136820925554, 0.9195171026156942, 0.8893360160965795, 0.8511066398390342, 0.7806841046277666, 0.37424547283702214, 0.32193158953722334, 0.3702213279678068, 0.36619718309859156, 0.3702213279678068, 0.3641851106639839, 0.3561368209255533, 0.34808853118712274, 0.22334004024144868, 0.2535211267605634, 0.2595573440643863, 0.2837022132796781, 0.29577464788732394, 0.29979879275653926, 0.30784708249496984, 0.32595573440643866, 0.3420523138832998, 0.3702213279678068, 0.386317907444668, 0.3983903420523139, 0.4225352112676056, 0.4647887323943662, 0.5231388329979879, 0.6016096579476862, 0.7927565392354124, 0.8511066398390342, 0.8752515090543259, 0.8993963782696177, 0.9295774647887324, 0.9476861167002012, 0.9416498993963782, 0.9255533199195171, 0.8893360160965795, 0.869215291750503, 0.8048289738430584, 0.7545271629778671, 0.5694164989939637, 0.482897384305835, 0.44466800804828976, 0.4044265593561368, 0.39235412474849096, 0.37424547283702214, 0.35412474849094566, 0.33601609657947684, 0.3158953722334004, 0.3058350100603622, 0.29979879275653926, 0.28772635814889336, 0.27364185110663986, 0.2535211267605634, 0.24346076458752516, 0.20724346076458752, 0.158953722334004, 0.14285714285714285, 0.12877263581488935, 0.12072434607645875, 0.10663983903420524, 0.09859154929577464, 0.09456740442655935, 0.09054325955734406, 0.07847082494969819, 0.0744466800804829, 0.07042253521126761, 0.07042253521126761, 0.07042253521126761, 0.07042253521126761, 0.07243460764587525, 0.07243460764587525, 0.07042253521126761, 0.14285714285714285, 0.14285714285714285, 0.14688128772635814, 0.07042253521126761, 0.07042253521126761, 0.07042253521126761, 0.07042253521126761, 0.07042253521126761, 0.0744466800804829, 0.07645875251509054, 0.07645875251509054, 0.07645875251509054, 0.0744466800804829, 0.0744466800804829, 0.0744466800804829, 0.0744466800804829, 0.0744466800804829, 0.07847082494969819, 0.07847082494969819, 0.08048289738430583, 0.8832997987927566, 0.08853118712273642, 0.1006036217303823, 0.1227364185110664, 0.13480885311871227, 0.14285714285714285, 0.1529175050301811, 0.23742454728370221, 0.5975855130784709], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DNApol3-delta_C.gap.json b/pfam_gap_rates/DNApol3-delta_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..3851a46520b0ef22d0a3c0fab49ad23fb245811c
--- /dev/null
+++ b/pfam_gap_rates/DNApol3-delta_C.gap.json
@@ -0,0 +1 @@
+{"family": "DNApol3-delta_C", "n_seqs": 388, "length": 119, "gap_rates": [0.8994845360824743, 0.8067010309278351, 0.7474226804123711, 0.6881443298969072, 0.6494845360824743, 0.6108247422680413, 0.6030927835051546, 0.5902061855670103, 0.5824742268041238, 0.5798969072164949, 0.5747422680412371, 0.5695876288659794, 0.5670103092783505, 0.865979381443299, 0.6752577319587629, 0.5798969072164949, 0.5335051546391752, 0.5231958762886598, 0.5154639175257731, 0.5128865979381443, 0.48195876288659795, 0.45103092783505155, 0.4252577319587629, 0.41494845360824745, 0.39690721649484534, 0.38402061855670105, 0.36597938144329895, 0.3479381443298969, 0.32216494845360827, 0.30670103092783507, 0.2963917525773196, 0.2551546391752577, 0.22422680412371135, 0.2268041237113402, 0.21391752577319587, 0.19329896907216496, 0.15721649484536082, 0.6520618556701031, 0.5618556701030928, 0.10824742268041238, 0.10309278350515463, 0.09278350515463918, 0.09020618556701031, 0.08505154639175258, 0.01804123711340206, 0.015463917525773196, 0.01804123711340206, 0.01288659793814433, 0.01288659793814433, 0.01288659793814433, 0.010309278350515464, 0.010309278350515464, 0.010309278350515464, 0.010309278350515464, 0.010309278350515464, 0.010309278350515464, 0.01804123711340206, 0.01804123711340206, 0.01288659793814433, 0.015463917525773196, 0.02577319587628866, 0.520618556701031, 0.07989690721649484, 0.03608247422680412, 0.03350515463917526, 0.028350515463917526, 0.005154639175257732, 0.002577319587628866, 0.002577319587628866, 0.0, 0.0, 0.002577319587628866, 0.002577319587628866, 0.0, 0.0, 0.002577319587628866, 0.005154639175257732, 0.01288659793814433, 0.010309278350515464, 0.005154639175257732, 0.0, 0.0, 0.002577319587628866, 0.002577319587628866, 0.002577319587628866, 0.002577319587628866, 0.002577319587628866, 0.007731958762886598, 0.005154639175257732, 0.002577319587628866, 0.002577319587628866, 0.002577319587628866, 0.007731958762886598, 0.002577319587628866, 0.002577319587628866, 0.002577319587628866, 0.007731958762886598, 0.01288659793814433, 0.01804123711340206, 0.02577319587628866, 0.04381443298969072, 0.05154639175257732, 0.7061855670103093, 0.6984536082474226, 0.09278350515463918, 0.0979381443298969, 0.10824742268041238, 0.1211340206185567, 0.12371134020618557, 0.12886597938144329, 0.13402061855670103, 0.14432989690721648, 0.17268041237113402, 0.18298969072164947, 0.20103092783505155, 0.22938144329896906, 0.2809278350515464, 0.37628865979381443, 0.6623711340206185], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DNase-RNase.gap.json b/pfam_gap_rates/DNase-RNase.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..43ee72dbc7ab018712c099da03809fd047215865
--- /dev/null
+++ b/pfam_gap_rates/DNase-RNase.gap.json
@@ -0,0 +1 @@
+{"family": "DNase-RNase", "n_seqs": 816, "length": 137, "gap_rates": [0.8174019607843137, 0.3872549019607843, 0.3382352941176471, 0.30392156862745096, 0.29044117647058826, 0.2647058823529412, 0.25980392156862747, 0.2426470588235294, 0.22303921568627452, 0.19117647058823528, 0.17524509803921567, 0.8468137254901961, 0.17769607843137256, 0.07965686274509803, 0.07352941176470588, 0.06740196078431372, 0.056372549019607844, 0.05392156862745098, 0.05269607843137255, 0.051470588235294115, 0.05024509803921569, 0.05024509803921569, 0.04534313725490196, 0.041666666666666664, 0.8247549019607843, 0.051470588235294115, 0.09681372549019608, 0.04656862745098039, 0.03431372549019608, 0.031862745098039214, 0.031862745098039214, 0.031862745098039214, 0.031862745098039214, 0.031862745098039214, 0.031862745098039214, 0.031862745098039214, 0.031862745098039214, 0.030637254901960783, 0.030637254901960783, 0.030637254901960783, 0.030637254901960783, 0.029411764705882353, 0.030637254901960783, 0.030637254901960783, 0.031862745098039214, 0.029411764705882353, 0.9264705882352942, 0.029411764705882353, 0.028186274509803922, 0.028186274509803922, 0.02696078431372549, 0.024509803921568627, 0.02696078431372549, 0.029411764705882353, 0.028186274509803922, 0.028186274509803922, 0.028186274509803922, 0.024509803921568627, 0.022058823529411766, 0.015931372549019607, 0.01715686274509804, 0.014705882352941176, 0.014705882352941176, 0.013480392156862746, 0.013480392156862746, 0.012254901960784314, 0.013480392156862746, 0.013480392156862746, 0.014705882352941176, 0.01715686274509804, 0.013480392156862746, 0.014705882352941176, 0.013480392156862746, 0.013480392156862746, 0.013480392156862746, 0.012254901960784314, 0.012254901960784314, 0.013480392156862746, 0.015931372549019607, 0.012254901960784314, 0.00980392156862745, 0.011029411764705883, 0.011029411764705883, 0.011029411764705883, 0.012254901960784314, 0.011029411764705883, 0.011029411764705883, 0.012254901960784314, 0.012254901960784314, 0.012254901960784314, 0.012254901960784314, 0.012254901960784314, 0.20465686274509803, 0.9178921568627451, 0.7708333333333334, 0.09558823529411764, 0.4227941176470588, 0.22058823529411764, 0.8517156862745098, 0.9473039215686274, 0.9129901960784313, 0.6813725490196079, 0.014705882352941176, 0.013480392156862746, 0.013480392156862746, 0.012254901960784314, 0.012254901960784314, 0.012254901960784314, 0.012254901960784314, 0.012254901960784314, 0.012254901960784314, 0.012254901960784314, 0.012254901960784314, 0.012254901960784314, 0.012254901960784314, 0.012254901960784314, 0.012254901960784314, 0.012254901960784314, 0.012254901960784314, 0.015931372549019607, 0.0196078431372549, 0.020833333333333332, 0.020833333333333332, 0.020833333333333332, 0.022058823529411766, 0.022058823529411766, 0.022058823529411766, 0.024509803921568627, 0.02696078431372549, 0.03431372549019608, 0.0428921568627451, 0.07475490196078431, 0.11887254901960784, 0.18872549019607843, 0.2965686274509804, 0.5294117647058824, 0.8382352941176471], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DP.gap.json b/pfam_gap_rates/DP.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ac889a324e5e033929982f69ad5df3a1272bfea2
--- /dev/null
+++ b/pfam_gap_rates/DP.gap.json
@@ -0,0 +1 @@
+{"family": "DP", "n_seqs": 234, "length": 141, "gap_rates": [0.6025641025641025, 0.27350427350427353, 0.23076923076923078, 0.2094017094017094, 0.19658119658119658, 0.1752136752136752, 0.16666666666666666, 0.15384615384615385, 0.1452991452991453, 0.1452991452991453, 0.14102564102564102, 0.12393162393162394, 0.1111111111111111, 0.09829059829059829, 0.09401709401709402, 0.09401709401709402, 0.09401709401709402, 0.09401709401709402, 0.09401709401709402, 0.08974358974358974, 0.08974358974358974, 0.08974358974358974, 0.08974358974358974, 0.08974358974358974, 0.08974358974358974, 0.08974358974358974, 0.08547008547008547, 0.08547008547008547, 0.06837606837606838, 0.07264957264957266, 0.07264957264957266, 0.06837606837606838, 0.06837606837606838, 0.06837606837606838, 0.0641025641025641, 0.0641025641025641, 0.0641025641025641, 0.05982905982905983, 0.0641025641025641, 0.0641025641025641, 0.0641025641025641, 0.06837606837606838, 0.07692307692307693, 0.08974358974358974, 0.08547008547008547, 0.08547008547008547, 0.7649572649572649, 0.12393162393162394, 0.10256410256410256, 0.09829059829059829, 0.10256410256410256, 0.10256410256410256, 0.08547008547008547, 0.09829059829059829, 0.1111111111111111, 0.4188034188034188, 0.37606837606837606, 0.07264957264957266, 0.06837606837606838, 0.06837606837606838, 0.06837606837606838, 0.06837606837606838, 0.06837606837606838, 0.06837606837606838, 0.0641025641025641, 0.0641025641025641, 0.06837606837606838, 0.06837606837606838, 0.06837606837606838, 0.0641025641025641, 0.06837606837606838, 0.06837606837606838, 0.06837606837606838, 0.06837606837606838, 0.0641025641025641, 0.0641025641025641, 0.0641025641025641, 0.06837606837606838, 0.06837606837606838, 0.06837606837606838, 0.06837606837606838, 0.06837606837606838, 0.06837606837606838, 0.07264957264957266, 0.07264957264957266, 0.07264957264957266, 0.07264957264957266, 0.07692307692307693, 0.07264957264957266, 0.07692307692307693, 0.0811965811965812, 0.7264957264957265, 0.08547008547008547, 0.08547008547008547, 0.08547008547008547, 0.08547008547008547, 0.08974358974358974, 0.08974358974358974, 0.08547008547008547, 0.08547008547008547, 0.08547008547008547, 0.08974358974358974, 0.09829059829059829, 0.11538461538461539, 0.11965811965811966, 0.13247863247863248, 0.15384615384615385, 0.16666666666666666, 0.18803418803418803, 0.23076923076923078, 0.2948717948717949, 0.2948717948717949, 0.9102564102564102, 0.31196581196581197, 0.31196581196581197, 0.3162393162393162, 0.3504273504273504, 0.36324786324786323, 0.37606837606837606, 0.3888888888888889, 0.4188034188034188, 0.4230769230769231, 0.42735042735042733, 0.44017094017094016, 0.4444444444444444, 0.45726495726495725, 0.45726495726495725, 0.46153846153846156, 0.46153846153846156, 0.46153846153846156, 0.4658119658119658, 0.4700854700854701, 0.47863247863247865, 0.49572649572649574, 0.5042735042735043, 0.5170940170940171, 0.5427350427350427, 0.5683760683760684, 0.594017094017094, 0.6709401709401709, 0.8632478632478633], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DPRP.gap.json b/pfam_gap_rates/DPRP.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..706c59769465d6fea70eb34d0f669eb0e2f795f8
--- /dev/null
+++ b/pfam_gap_rates/DPRP.gap.json
@@ -0,0 +1 @@
+{"family": "DPRP", "n_seqs": 395, "length": 231, "gap_rates": [0.389873417721519, 0.1189873417721519, 0.0810126582278481, 0.0810126582278481, 0.0759493670886076, 0.0759493670886076, 0.0759493670886076, 0.0759493670886076, 0.0759493670886076, 0.0759493670886076, 0.0810126582278481, 0.08607594936708861, 0.09113924050632911, 0.09620253164556962, 0.07848101265822785, 0.07341772151898734, 0.06835443037974684, 0.08607594936708861, 0.9468354430379747, 0.9215189873417722, 0.3240506329113924, 0.3620253164556962, 0.17468354430379746, 0.13924050632911392, 0.04810126582278481, 0.04050632911392405, 0.04050632911392405, 0.0379746835443038, 0.035443037974683546, 0.030379746835443037, 0.030379746835443037, 0.030379746835443037, 0.030379746835443037, 0.03291139240506329, 0.030379746835443037, 0.030379746835443037, 0.030379746835443037, 0.030379746835443037, 0.030379746835443037, 0.030379746835443037, 0.030379746835443037, 0.030379746835443037, 0.030379746835443037, 0.030379746835443037, 0.030379746835443037, 0.030379746835443037, 0.030379746835443037, 0.030379746835443037, 0.030379746835443037, 0.030379746835443037, 0.030379746835443037, 0.030379746835443037, 0.02531645569620253, 0.02531645569620253, 0.02531645569620253, 0.02531645569620253, 0.027848101265822784, 0.027848101265822784, 0.030379746835443037, 0.03291139240506329, 0.03291139240506329, 0.035443037974683546, 0.06329113924050633, 0.07848101265822785, 0.07341772151898734, 0.043037974683544304, 0.035443037974683546, 0.035443037974683546, 0.03291139240506329, 0.027848101265822784, 0.027848101265822784, 0.027848101265822784, 0.027848101265822784, 0.24050632911392406, 0.2936708860759494, 0.31139240506329113, 0.3620253164556962, 0.37721518987341773, 0.4582278481012658, 0.09873417721518987, 0.08354430379746836, 0.0759493670886076, 0.06329113924050633, 0.04556962025316456, 0.04556962025316456, 0.04810126582278481, 0.04556962025316456, 0.05063291139240506, 0.04556962025316456, 0.053164556962025315, 0.07341772151898734, 0.10126582278481013, 0.08607594936708861, 0.06835443037974684, 0.04810126582278481, 0.0379746835443038, 0.035443037974683546, 0.03291139240506329, 0.03291139240506329, 0.03291139240506329, 0.03291139240506329, 0.03291139240506329, 0.03291139240506329, 0.03291139240506329, 0.03291139240506329, 0.03291139240506329, 0.03291139240506329, 0.030379746835443037, 0.030379746835443037, 0.030379746835443037, 0.030379746835443037, 0.030379746835443037, 0.03291139240506329, 0.06835443037974684, 0.21012658227848102, 0.21265822784810126, 0.21265822784810126, 0.9468354430379747, 0.13164556962025317, 0.030379746835443037, 0.030379746835443037, 0.03291139240506329, 0.043037974683544304, 0.24050632911392406, 0.22531645569620254, 0.027848101265822784, 0.027848101265822784, 0.027848101265822784, 0.030379746835443037, 0.02531645569620253, 0.02531645569620253, 0.02531645569620253, 0.02531645569620253, 0.02531645569620253, 0.02531645569620253, 0.02531645569620253, 0.02531645569620253, 0.02278481012658228, 0.02531645569620253, 0.02531645569620253, 0.02531645569620253, 0.02531645569620253, 0.02531645569620253, 0.9316455696202531, 0.06835443037974684, 0.05063291139240506, 0.030379746835443037, 0.02531645569620253, 0.020253164556962026, 0.02278481012658228, 0.020253164556962026, 0.020253164556962026, 0.020253164556962026, 0.020253164556962026, 0.020253164556962026, 0.020253164556962026, 0.020253164556962026, 0.020253164556962026, 0.020253164556962026, 0.020253164556962026, 0.020253164556962026, 0.020253164556962026, 0.020253164556962026, 0.020253164556962026, 0.020253164556962026, 0.017721518987341773, 0.017721518987341773, 0.1468354430379747, 0.05063291139240506, 0.08860759493670886, 0.44050632911392407, 0.017721518987341773, 0.020253164556962026, 0.02278481012658228, 0.02278481012658228, 0.020253164556962026, 0.02278481012658228, 0.02278481012658228, 0.02278481012658228, 0.02278481012658228, 0.02278481012658228, 0.02278481012658228, 0.02278481012658228, 0.02278481012658228, 0.02278481012658228, 0.02278481012658228, 0.02531645569620253, 0.02531645569620253, 0.02531645569620253, 0.02531645569620253, 0.6860759493670886, 0.9139240506329114, 0.6556962025316456, 0.030379746835443037, 0.027848101265822784, 0.027848101265822784, 0.027848101265822784, 0.03291139240506329, 0.030379746835443037, 0.030379746835443037, 0.030379746835443037, 0.03291139240506329, 0.035443037974683546, 0.035443037974683546, 0.035443037974683546, 0.23544303797468355, 0.22784810126582278, 0.0379746835443038, 0.04050632911392405, 0.04050632911392405, 0.043037974683544304, 0.043037974683544304, 0.043037974683544304, 0.04556962025316456, 0.04556962025316456, 0.05569620253164557, 0.05569620253164557, 0.10632911392405063, 0.1341772151898734, 0.1620253164556962, 0.15949367088607594, 0.1670886075949367, 0.16962025316455695, 0.17215189873417722, 0.17468354430379746, 0.18227848101265823, 0.21012658227848102, 0.2683544303797468, 0.35443037974683544, 0.4151898734177215, 0.5063291139240507], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DRMBL.gap.json b/pfam_gap_rates/DRMBL.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..7751889240cf6c6cdbdbfabcfd988c96bff4cf2f
--- /dev/null
+++ b/pfam_gap_rates/DRMBL.gap.json
@@ -0,0 +1 @@
+{"family": "DRMBL", "n_seqs": 556, "length": 154, "gap_rates": [0.6366906474820144, 0.5359712230215827, 0.4694244604316547, 0.3723021582733813, 0.28776978417266186, 0.26798561151079137, 0.25359712230215825, 0.24820143884892087, 0.24280575539568344, 0.2841726618705036, 0.23381294964028776, 0.23201438848920863, 0.21942446043165467, 0.2158273381294964, 0.2158273381294964, 0.2158273381294964, 0.2158273381294964, 0.21402877697841727, 0.935251798561151, 0.21402877697841727, 0.21402877697841727, 0.21762589928057555, 0.9388489208633094, 0.9442446043165468, 0.9460431654676259, 0.9442446043165468, 0.9370503597122302, 0.22482014388489208, 0.21762589928057555, 0.21762589928057555, 0.9064748201438849, 0.9226618705035972, 0.9172661870503597, 0.8219424460431655, 0.21942446043165467, 0.21223021582733814, 0.20503597122302158, 0.2068345323741007, 0.20863309352517986, 0.20323741007194246, 0.19784172661870503, 0.19424460431654678, 0.1960431654676259, 0.26258992805755393, 0.2643884892086331, 0.26258992805755393, 0.30755395683453235, 0.2751798561151079, 0.9190647482014388, 0.9460431654676259, 0.8741007194244604, 0.18525179856115107, 0.16906474820143885, 0.16546762589928057, 0.1564748201438849, 0.15467625899280577, 0.15467625899280577, 0.1528776978417266, 0.1510791366906475, 0.14928057553956833, 0.1510791366906475, 0.14568345323741008, 0.8974820143884892, 0.802158273381295, 0.14568345323741008, 0.1474820143884892, 0.14568345323741008, 0.14568345323741008, 0.14568345323741008, 0.16906474820143885, 0.2589928057553957, 0.28597122302158273, 0.24820143884892087, 0.24280575539568344, 0.24820143884892087, 0.24100719424460432, 0.49460431654676257, 0.5251798561151079, 0.4550359712230216, 0.4154676258992806, 0.45143884892086333, 0.7248201438848921, 0.7212230215827338, 0.7194244604316546, 0.6079136690647482, 0.6888489208633094, 0.6888489208633094, 0.6942446043165468, 0.7050359712230215, 0.710431654676259, 0.7266187050359713, 0.7571942446043165, 0.8057553956834532, 0.8830935251798561, 0.9010791366906474, 0.9388489208633094, 0.9496402877697842, 0.9442446043165468, 0.9154676258992805, 0.8920863309352518, 0.8794964028776978, 0.7715827338129496, 0.7482014388489209, 0.7122302158273381, 0.7068345323741008, 0.6996402877697842, 0.6906474820143885, 0.6888489208633094, 0.6888489208633094, 0.5845323741007195, 0.5179856115107914, 0.4550359712230216, 0.35431654676258995, 0.19964028776978418, 0.17086330935251798, 0.15467625899280577, 0.13848920863309352, 0.1223021582733813, 0.08633093525179857, 0.04316546762589928, 0.03237410071942446, 0.025179856115107913, 0.02158273381294964, 0.019784172661870502, 0.01618705035971223, 0.017985611510791366, 0.01618705035971223, 0.01618705035971223, 0.01618705035971223, 0.017985611510791366, 0.017985611510791366, 0.017985611510791366, 0.017985611510791366, 0.017985611510791366, 0.017985611510791366, 0.017985611510791366, 0.017985611510791366, 0.019784172661870502, 0.02158273381294964, 0.025179856115107913, 0.02158273381294964, 0.025179856115107913, 0.030575539568345324, 0.02697841726618705, 0.03776978417266187, 0.03597122302158273, 0.039568345323741004, 0.04316546762589928, 0.046762589928057555, 0.0683453237410072, 0.15467625899280577, 0.3039568345323741, 0.48741007194244607, 0.935251798561151], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DSBA.gap.json b/pfam_gap_rates/DSBA.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..1a3b03fc613316511c471bf69c72f4be49c5eb9b
--- /dev/null
+++ b/pfam_gap_rates/DSBA.gap.json
@@ -0,0 +1 @@
+{"family": "DSBA", "n_seqs": 2588, "length": 226, "gap_rates": [0.6271251931993818, 0.2739567233384853, 0.22642967542503864, 0.20401854714064915, 0.187403400309119, 0.17078825347758886, 0.1634466769706337, 0.16190108191653788, 0.15571870170015456, 0.1553323029366306, 0.1545595054095827, 0.15378670788253476, 0.15378670788253476, 0.15301391035548687, 0.15301391035548687, 0.151854714064915, 0.15030911901081917, 0.15417310664605874, 0.14837712519319937, 0.14876352395672335, 0.14683153013910355, 0.1445131375579598, 0.1445131375579598, 0.14142194744976816, 0.14876352395672335, 0.14605873261205565, 0.14489953632148378, 0.6889489953632149, 0.8960587326120556, 0.9281298299845441, 0.9184698608964451, 0.7376352395672334, 0.6391035548686245, 0.46020092735703244, 0.15069551777434312, 0.884080370942813, 0.1418083462132921, 0.13292117465224113, 0.1321483771251932, 0.13292117465224113, 0.13098918083462133, 0.1302163833075734, 0.13253477588871715, 0.13060278207109738, 0.13408037094281297, 0.13330757341576507, 0.12867078825347758, 0.13098918083462133, 0.13176197836166925, 0.4169242658423493, 0.37364760432766614, 0.5235703245749613, 0.3446676970633694, 0.32457496136012365, 0.3025502318392581, 0.29520865533230295, 0.3323029366306028, 0.3230293663060278, 0.3284389489953632, 0.2886398763523957, 0.5552550231839258, 0.6058732612055642, 0.6792890262751159, 0.8098918083462133, 0.9478361669242659, 0.9242658423493045, 0.7283616692426584, 0.6371715610510046, 0.5792117465224111, 0.4764296754250386, 0.2793663060278207, 0.29095826893353943, 0.2874806800618238, 0.2840030911901082, 0.28091190108191655, 0.27743431221020093, 0.27627511591962906, 0.27627511591962906, 0.2747295208655332, 0.27279752704791344, 0.28593508500772796, 0.28786707882534773, 0.28516228748068007, 0.2832302936630603, 0.28129829984544047, 0.2971406491499227, 0.2936630602782071, 0.28168469860896445, 0.28091190108191655, 0.27627511591962906, 0.27279752704791344, 0.2704791344667697, 0.2704791344667697, 0.2639103554868624, 0.25772797527047914, 0.250386398763524, 0.2445904173106646, 0.24381761978361668, 0.9088098918083463, 0.9385625965996909, 0.9265842349304482, 0.883693972179289, 0.2268160741885626, 0.3226429675425039, 0.2283616692426584, 0.6526275115919629, 0.10510046367851623, 0.09003091190108192, 0.07650695517774343, 0.07341576506955177, 0.0695517774343122, 0.05795981452859351, 0.05293663060278207, 0.04868624420401855, 0.047527047913446675, 0.047527047913446675, 0.04559505409582689, 0.04482225656877898, 0.04404945904173107, 0.04559505409582689, 0.04482225656877898, 0.05989180834621329, 0.6920401854714064, 0.8639876352395672, 0.6418083462132921, 0.17619783616692428, 0.13794435857805254, 0.12712519319938176, 0.07032457496136012, 0.04250386398763524, 0.0401854714064915, 0.0401854714064915, 0.03863987635239567, 0.03902627511591963, 0.03941267387944358, 0.038253477588871716, 0.038253477588871716, 0.038253477588871716, 0.038253477588871716, 0.039799072642967545, 0.05795981452859351, 0.04095826893353941, 0.039799072642967545, 0.03786707882534776, 0.03863987635239567, 0.03593508500772798, 0.03516228748068006, 0.0347758887171561, 0.061051004636785165, 0.10394126738794436, 0.030911901081916538, 0.029752704791344668, 0.030139103554868624, 0.030139103554868624, 0.030525502318392583, 0.03168469860896445, 0.03207109737248841, 0.03284389489953632, 0.03284389489953632, 0.02936630602782071, 0.9497681607418856, 0.11051004636785162, 0.06375579598145285, 0.061823802163833076, 0.05100463678516229, 0.042890262751159196, 0.03593508500772798, 0.0347758887171561, 0.03670788253477589, 0.03516228748068006, 0.03670788253477589, 0.03632148377125193, 0.9211746522411128, 0.03709428129829984, 0.039799072642967545, 0.04404945904173107, 0.0401854714064915, 0.03168469860896445, 0.0312982998454405, 0.03168469860896445, 0.03207109737248841, 0.03361669242658424, 0.03284389489953632, 0.03361669242658424, 0.0347758887171561, 0.03438948995363215, 0.03438948995363215, 0.03516228748068006, 0.03632148377125193, 0.03709428129829984, 0.03863987635239567, 0.038253477588871716, 0.037480680061823805, 0.037480680061823805, 0.037480680061823805, 0.037480680061823805, 0.037480680061823805, 0.03786707882534776, 0.03902627511591963, 0.03941267387944358, 0.9072642967542504, 0.9455177743431221, 0.8690108191653787, 0.044435857805255025, 0.05564142194744977, 0.05486862442040186, 0.9064914992272025, 0.9269706336939721, 0.857032457496136, 0.40610510046367854, 0.09853168469860897, 0.11051004636785162, 0.13369397217928902, 0.15842349304482226, 0.21406491499227204, 0.23415765069551778, 0.24845440494590418, 0.259273570324575, 0.27163833075734156, 0.2867078825347759, 0.31491499227202474, 0.3500772797527048, 0.3979907264296754, 0.46986089644513135, 0.5386398763523956, 0.9273570324574961], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF1003.gap.json b/pfam_gap_rates/DUF1003.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..008e3db52a291af3161603aca4f508edfae5ece5
--- /dev/null
+++ b/pfam_gap_rates/DUF1003.gap.json
@@ -0,0 +1 @@
+{"family": "DUF1003", "n_seqs": 570, "length": 107, "gap_rates": [0.32105263157894737, 0.02631578947368421, 0.02280701754385965, 0.021052631578947368, 0.017543859649122806, 0.015789473684210527, 0.014035087719298246, 0.014035087719298246, 0.014035087719298246, 0.012280701754385965, 0.012280701754385965, 0.012280701754385965, 0.012280701754385965, 0.014035087719298246, 0.012280701754385965, 0.012280701754385965, 0.012280701754385965, 0.010526315789473684, 0.010526315789473684, 0.010526315789473684, 0.012280701754385965, 0.028070175438596492, 0.028070175438596492, 0.1, 0.35964912280701755, 0.9491228070175438, 0.7964912280701755, 0.05789473684210526, 0.03508771929824561, 0.031578947368421054, 0.02280701754385965, 0.01929824561403509, 0.012280701754385965, 0.010526315789473684, 0.010526315789473684, 0.07368421052631578, 0.8824561403508772, 0.8456140350877193, 0.01929824561403509, 0.008771929824561403, 0.008771929824561403, 0.007017543859649123, 0.007017543859649123, 0.007017543859649123, 0.0035087719298245615, 0.0035087719298245615, 0.005263157894736842, 0.005263157894736842, 0.0035087719298245615, 0.0035087719298245615, 0.0035087719298245615, 0.0035087719298245615, 0.0035087719298245615, 0.0035087719298245615, 0.0035087719298245615, 0.005263157894736842, 0.005263157894736842, 0.005263157894736842, 0.005263157894736842, 0.005263157894736842, 0.005263157894736842, 0.005263157894736842, 0.005263157894736842, 0.005263157894736842, 0.005263157894736842, 0.007017543859649123, 0.007017543859649123, 0.007017543859649123, 0.008771929824561403, 0.008771929824561403, 0.008771929824561403, 0.008771929824561403, 0.008771929824561403, 0.010526315789473684, 0.012280701754385965, 0.012280701754385965, 0.014035087719298246, 0.015789473684210527, 0.014035087719298246, 0.014035087719298246, 0.014035087719298246, 0.014035087719298246, 0.014035087719298246, 0.017543859649122806, 0.015789473684210527, 0.015789473684210527, 0.015789473684210527, 0.015789473684210527, 0.015789473684210527, 0.017543859649122806, 0.017543859649122806, 0.01929824561403509, 0.02280701754385965, 0.02631578947368421, 0.03508771929824561, 0.03859649122807018, 0.03859649122807018, 0.04736842105263158, 0.05964912280701754, 0.07719298245614035, 0.12982456140350876, 0.21052631578947367, 0.2824561403508772, 0.4087719298245614, 0.5684210526315789, 0.6578947368421053, 0.7175438596491228], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF1005.gap.json b/pfam_gap_rates/DUF1005.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..67a51597b669fd6a225bfb73458a78bea768cccc
--- /dev/null
+++ b/pfam_gap_rates/DUF1005.gap.json
@@ -0,0 +1 @@
+{"family": "DUF1005", "n_seqs": 133, "length": 509, "gap_rates": [0.21804511278195488, 0.21804511278195488, 0.21804511278195488, 0.21804511278195488, 0.21804511278195488, 0.21804511278195488, 0.21804511278195488, 0.21804511278195488, 0.21804511278195488, 0.21804511278195488, 0.21804511278195488, 0.21804511278195488, 0.21804511278195488, 0.21804511278195488, 0.21804511278195488, 0.21804511278195488, 0.21804511278195488, 0.21804511278195488, 0.21804511278195488, 0.8796992481203008, 0.2631578947368421, 0.2706766917293233, 0.2706766917293233, 0.3458646616541353, 0.3458646616541353, 0.3383458646616541, 0.8120300751879699, 0.9398496240601504, 0.7443609022556391, 0.2932330827067669, 0.2781954887218045, 0.2781954887218045, 0.2631578947368421, 0.24812030075187969, 0.24812030075187969, 0.21804511278195488, 0.22556390977443608, 0.21804511278195488, 0.21804511278195488, 0.21804511278195488, 0.21804511278195488, 0.21804511278195488, 0.21804511278195488, 0.21052631578947367, 0.21052631578947367, 0.21052631578947367, 0.21052631578947367, 0.21052631578947367, 0.21052631578947367, 0.20300751879699247, 0.19548872180451127, 0.19548872180451127, 0.18796992481203006, 0.18796992481203006, 0.18796992481203006, 0.18796992481203006, 0.18796992481203006, 0.18796992481203006, 0.18796992481203006, 0.18796992481203006, 0.18796992481203006, 0.18796992481203006, 0.22556390977443608, 0.24060150375939848, 0.2857142857142857, 0.7894736842105263, 0.9172932330827067, 0.9323308270676691, 0.9398496240601504, 0.9172932330827067, 0.8872180451127819, 0.6165413533834586, 0.48872180451127817, 0.21804511278195488, 0.21052631578947367, 0.20300751879699247, 0.18796992481203006, 0.18796992481203006, 0.18796992481203006, 0.18796992481203006, 0.18796992481203006, 0.18796992481203006, 0.18796992481203006, 0.18796992481203006, 0.18796992481203006, 0.18796992481203006, 0.18796992481203006, 0.18796992481203006, 0.18796992481203006, 0.18796992481203006, 0.18796992481203006, 0.18796992481203006, 0.18796992481203006, 0.18796992481203006, 0.18796992481203006, 0.19548872180451127, 0.39849624060150374, 0.5864661654135338, 0.45112781954887216, 0.45864661654135336, 0.45112781954887216, 0.43609022556390975, 0.9097744360902256, 0.41353383458646614, 0.3684210526315789, 0.21052631578947367, 0.2631578947368421, 0.9172932330827067, 0.9473684210526315, 0.9398496240601504, 0.8872180451127819, 0.18796992481203006, 0.18796992481203006, 0.18796992481203006, 0.18796992481203006, 0.18796992481203006, 0.18796992481203006, 0.18796992481203006, 0.18796992481203006, 0.18796992481203006, 0.19548872180451127, 0.924812030075188, 0.8796992481203008, 0.21804511278195488, 0.22556390977443608, 0.22556390977443608, 0.21804511278195488, 0.21052631578947367, 0.21052631578947367, 0.9172932330827067, 0.7293233082706767, 0.21052631578947367, 0.20300751879699247, 0.20300751879699247, 0.20300751879699247, 0.18045112781954886, 0.18045112781954886, 0.17293233082706766, 0.17293233082706766, 0.17293233082706766, 0.17293233082706766, 0.17293233082706766, 0.17293233082706766, 0.17293233082706766, 0.17293233082706766, 0.17293233082706766, 0.17293233082706766, 0.18045112781954886, 0.17293233082706766, 0.16541353383458646, 0.16541353383458646, 0.18796992481203006, 0.18796992481203006, 0.17293233082706766, 0.17293233082706766, 0.17293233082706766, 0.17293233082706766, 0.17293233082706766, 0.17293233082706766, 0.17293233082706766, 0.17293233082706766, 0.18045112781954886, 0.18045112781954886, 0.18045112781954886, 0.18045112781954886, 0.18045112781954886, 0.21052631578947367, 0.23308270676691728, 0.39097744360902253, 0.9398496240601504, 0.9473684210526315, 0.9323308270676691, 0.6090225563909775, 0.6015037593984962, 0.47368421052631576, 0.39849624060150374, 0.3233082706766917, 0.8872180451127819, 0.8646616541353384, 0.18796992481203006, 0.17293233082706766, 0.17293233082706766, 0.16541353383458646, 0.16541353383458646, 0.15789473684210525, 0.15789473684210525, 0.15789473684210525, 0.15789473684210525, 0.15789473684210525, 0.15789473684210525, 0.15789473684210525, 0.15789473684210525, 0.15789473684210525, 0.15789473684210525, 0.15789473684210525, 0.15789473684210525, 0.15789473684210525, 0.15789473684210525, 0.15789473684210525, 0.15789473684210525, 0.15789473684210525, 0.15789473684210525, 0.15789473684210525, 0.15789473684210525, 0.15789473684210525, 0.15789473684210525, 0.15789473684210525, 0.15789473684210525, 0.15789473684210525, 0.15789473684210525, 0.15789473684210525, 0.15789473684210525, 0.9323308270676691, 0.9398496240601504, 0.9473684210526315, 0.9323308270676691, 0.9172932330827067, 0.15037593984962405, 0.15037593984962405, 0.15037593984962405, 0.15037593984962405, 0.15037593984962405, 0.15037593984962405, 0.15037593984962405, 0.15037593984962405, 0.15037593984962405, 0.15037593984962405, 0.15037593984962405, 0.15037593984962405, 0.15037593984962405, 0.15037593984962405, 0.15037593984962405, 0.44360902255639095, 0.43609022556390975, 0.43609022556390975, 0.41353383458646614, 0.7593984962406015, 0.7368421052631579, 0.41353383458646614, 0.20300751879699247, 0.18045112781954886, 0.18796992481203006, 0.21052631578947367, 0.23308270676691728, 0.22556390977443608, 0.24812030075187969, 0.2781954887218045, 0.45864661654135336, 0.44360902255639095, 0.42857142857142855, 0.2932330827067669, 0.8345864661654135, 0.2706766917293233, 0.2631578947368421, 0.24812030075187969, 0.24812030075187969, 0.24812030075187969, 0.2556390977443609, 0.24812030075187969, 0.9398496240601504, 0.7669172932330827, 0.2631578947368421, 0.22556390977443608, 0.21052631578947367, 0.21804511278195488, 0.18045112781954886, 0.18045112781954886, 0.18796992481203006, 0.9473684210526315, 0.9473684210526315, 0.18045112781954886, 0.18045112781954886, 0.18045112781954886, 0.18045112781954886, 0.18045112781954886, 0.18796992481203006, 0.18796992481203006, 0.18796992481203006, 0.18045112781954886, 0.18045112781954886, 0.18045112781954886, 0.18045112781954886, 0.17293233082706766, 0.17293233082706766, 0.17293233082706766, 0.17293233082706766, 0.17293233082706766, 0.17293233082706766, 0.17293233082706766, 0.17293233082706766, 0.17293233082706766, 0.17293233082706766, 0.18045112781954886, 0.18796992481203006, 0.18796992481203006, 0.18796992481203006, 0.18796992481203006, 0.19548872180451127, 0.19548872180451127, 0.19548872180451127, 0.19548872180451127, 0.18796992481203006, 0.18796992481203006, 0.18796992481203006, 0.19548872180451127, 0.18796992481203006, 0.18796992481203006, 0.18045112781954886, 0.18045112781954886, 0.18045112781954886, 0.18045112781954886, 0.18045112781954886, 0.18045112781954886, 0.18796992481203006, 0.18796992481203006, 0.18796992481203006, 0.18796992481203006, 0.18796992481203006, 0.18796992481203006, 0.18796992481203006, 0.9473684210526315, 0.18796992481203006, 0.19548872180451127, 0.18796992481203006, 0.5939849624060151, 0.8947368421052632, 0.9473684210526315, 0.5939849624060151, 0.5939849624060151, 0.18796992481203006, 0.18796992481203006, 0.18796992481203006, 0.18796992481203006, 0.18045112781954886, 0.18045112781954886, 0.18045112781954886, 0.18045112781954886, 0.18045112781954886, 0.18045112781954886, 0.18045112781954886, 0.18045112781954886, 0.18045112781954886, 0.17293233082706766, 0.18045112781954886, 0.18045112781954886, 0.19548872180451127, 0.8421052631578947, 0.8571428571428571, 0.8195488721804511, 0.23308270676691728, 0.20300751879699247, 0.17293233082706766, 0.16541353383458646, 0.16541353383458646, 0.16541353383458646, 0.17293233082706766, 0.17293233082706766, 0.17293233082706766, 0.17293233082706766, 0.40601503759398494, 0.21052631578947367, 0.5939849624060151, 0.5488721804511278, 0.5263157894736842, 0.5338345864661654, 0.41353383458646614, 0.3233082706766917, 0.21052631578947367, 0.16541353383458646, 0.16541353383458646, 0.16541353383458646, 0.16541353383458646, 0.16541353383458646, 0.16541353383458646, 0.16541353383458646, 0.16541353383458646, 0.16541353383458646, 0.16541353383458646, 0.16541353383458646, 0.16541353383458646, 0.16541353383458646, 0.16541353383458646, 0.16541353383458646, 0.16541353383458646, 0.16541353383458646, 0.16541353383458646, 0.16541353383458646, 0.16541353383458646, 0.16541353383458646, 0.21804511278195488, 0.22556390977443608, 0.3383458646616541, 0.38345864661654133, 0.42105263157894735, 0.5112781954887218, 0.8270676691729323, 0.8646616541353384, 0.9022556390977443, 0.924812030075188, 0.9323308270676691, 0.924812030075188, 0.8947368421052632, 0.849624060150376, 0.7669172932330827, 0.47368421052631576, 0.48120300751879697, 0.46616541353383456, 0.42857142857142855, 0.41353383458646614, 0.39097744360902253, 0.3458646616541353, 0.3383458646616541, 0.3308270676691729, 0.3233082706766917, 0.2781954887218045, 0.2556390977443609, 0.23308270676691728, 0.22556390977443608, 0.9022556390977443, 0.9097744360902256, 0.9097744360902256, 0.9097744360902256, 0.9097744360902256, 0.9097744360902256, 0.9097744360902256, 0.9097744360902256, 0.9097744360902256, 0.9097744360902256, 0.9097744360902256, 0.9097744360902256, 0.9022556390977443, 0.2631578947368421, 0.2556390977443609, 0.7969924812030075, 0.5338345864661654, 0.41353383458646614, 0.3458646616541353, 0.3308270676691729, 0.2932330827067669, 0.2631578947368421, 0.24812030075187969, 0.3157894736842105, 0.39097744360902253, 0.37593984962406013, 0.24060150375939848, 0.15789473684210525, 0.15789473684210525, 0.15789473684210525, 0.15037593984962405, 0.15037593984962405, 0.15037593984962405, 0.15037593984962405, 0.15037593984962405, 0.15789473684210525, 0.15789473684210525, 0.15789473684210525, 0.16541353383458646, 0.16541353383458646, 0.16541353383458646, 0.16541353383458646, 0.16541353383458646, 0.924812030075188, 0.9172932330827067, 0.15789473684210525, 0.15789473684210525, 0.15789473684210525, 0.15789473684210525, 0.15789473684210525, 0.15789473684210525, 0.15789473684210525, 0.15789473684210525, 0.15789473684210525, 0.15789473684210525, 0.15789473684210525, 0.15789473684210525, 0.15789473684210525, 0.15789473684210525, 0.15789473684210525, 0.15789473684210525, 0.15789473684210525, 0.15789473684210525, 0.15789473684210525, 0.15789473684210525, 0.15789473684210525, 0.15789473684210525, 0.15789473684210525, 0.15789473684210525, 0.15789473684210525, 0.15789473684210525, 0.15789473684210525, 0.15789473684210525, 0.15789473684210525, 0.15789473684210525, 0.15789473684210525, 0.15789473684210525, 0.15789473684210525, 0.15789473684210525, 0.15789473684210525, 0.15789473684210525, 0.15789473684210525, 0.15789473684210525, 0.16541353383458646, 0.16541353383458646, 0.19548872180451127, 0.20300751879699247, 0.21804511278195488, 0.22556390977443608, 0.3082706766917293, 0.39849624060150374], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF1014.gap.json b/pfam_gap_rates/DUF1014.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..790caa4366ffffd5cffc1337d8a33506df7b7471
--- /dev/null
+++ b/pfam_gap_rates/DUF1014.gap.json
@@ -0,0 +1 @@
+{"family": "DUF1014", "n_seqs": 315, "length": 293, "gap_rates": [0.873015873015873, 0.6634920634920635, 0.5936507936507937, 0.5619047619047619, 0.5206349206349207, 0.46984126984126984, 0.46984126984126984, 0.4222222222222222, 0.37142857142857144, 0.3523809523809524, 0.3333333333333333, 0.32063492063492066, 0.3142857142857143, 0.30158730158730157, 0.2920634920634921, 0.28888888888888886, 0.2984126984126984, 0.32063492063492066, 0.21904761904761905, 0.5682539682539682, 0.5841269841269842, 0.7206349206349206, 0.7555555555555555, 0.7904761904761904, 0.8380952380952381, 0.8698412698412699, 0.9111111111111111, 0.9206349206349206, 0.9333333333333333, 0.9492063492063492, 0.9301587301587302, 0.9174603174603174, 0.9015873015873016, 0.8571428571428571, 0.8095238095238095, 0.7746031746031746, 0.7396825396825397, 0.6793650793650794, 0.5777777777777777, 0.5650793650793651, 0.35873015873015873, 0.49206349206349204, 0.946031746031746, 0.8253968253968254, 0.38095238095238093, 0.326984126984127, 0.3047619047619048, 0.27936507936507937, 0.2761904761904762, 0.2507936507936508, 0.2507936507936508, 0.24444444444444444, 0.24444444444444444, 0.22857142857142856, 0.23174603174603176, 0.23174603174603176, 0.23492063492063492, 0.24126984126984127, 0.2507936507936508, 0.24761904761904763, 0.09206349206349207, 0.7015873015873015, 0.7111111111111111, 0.7174603174603175, 0.7301587301587301, 0.7365079365079366, 0.7523809523809524, 0.7587301587301587, 0.765079365079365, 0.7841269841269841, 0.7873015873015873, 0.7904761904761904, 0.7904761904761904, 0.7936507936507936, 0.8031746031746032, 0.8031746031746032, 0.8158730158730159, 0.8158730158730159, 0.8222222222222222, 0.8285714285714286, 0.8285714285714286, 0.8317460317460318, 0.834920634920635, 0.834920634920635, 0.8380952380952381, 0.8507936507936508, 0.8571428571428571, 0.8698412698412699, 0.8761904761904762, 0.8888888888888888, 0.9111111111111111, 0.9142857142857143, 0.9238095238095239, 0.946031746031746, 0.9365079365079365, 0.9206349206349206, 0.9111111111111111, 0.8984126984126984, 0.8857142857142857, 0.873015873015873, 0.8634920634920635, 0.8507936507936508, 0.8476190476190476, 0.834920634920635, 0.834920634920635, 0.8317460317460318, 0.8285714285714286, 0.8285714285714286, 0.8285714285714286, 0.8158730158730159, 0.8158730158730159, 0.8095238095238095, 0.8031746031746032, 0.7968253968253968, 0.7936507936507936, 0.7904761904761904, 0.7904761904761904, 0.7841269841269841, 0.7682539682539683, 0.7587301587301587, 0.7555555555555555, 0.7523809523809524, 0.7301587301587301, 0.7206349206349206, 0.7142857142857143, 0.7111111111111111, 0.7015873015873015, 0.08888888888888889, 0.1492063492063492, 0.1492063492063492, 0.15555555555555556, 0.17142857142857143, 0.20952380952380953, 0.5777777777777777, 0.37777777777777777, 0.35555555555555557, 0.37777777777777777, 0.819047619047619, 0.653968253968254, 0.6317460317460317, 0.6317460317460317, 0.6285714285714286, 0.6095238095238096, 0.873015873015873, 0.8031746031746032, 0.48253968253968255, 0.4666666666666667, 0.30793650793650795, 0.2698412698412698, 0.015873015873015872, 0.7142857142857143, 0.7142857142857143, 0.7142857142857143, 0.7174603174603175, 0.7206349206349206, 0.7206349206349206, 0.7238095238095238, 0.726984126984127, 0.7301587301587301, 0.7365079365079366, 0.7365079365079366, 0.7428571428571429, 0.746031746031746, 0.7523809523809524, 0.7587301587301587, 0.765079365079365, 0.7714285714285715, 0.7841269841269841, 0.7904761904761904, 0.8222222222222222, 0.8317460317460318, 0.8380952380952381, 0.8571428571428571, 0.8761904761904762, 0.8984126984126984, 0.9111111111111111, 0.9301587301587302, 0.9365079365079365, 0.9428571428571428, 0.9301587301587302, 0.926984126984127, 0.9015873015873016, 0.8888888888888888, 0.8634920634920635, 0.8476190476190476, 0.834920634920635, 0.8285714285714286, 0.8095238095238095, 0.7873015873015873, 0.7746031746031746, 0.765079365079365, 0.765079365079365, 0.7523809523809524, 0.7523809523809524, 0.7428571428571429, 0.7428571428571429, 0.7365079365079366, 0.7333333333333333, 0.7301587301587301, 0.7238095238095238, 0.7238095238095238, 0.7206349206349206, 0.7206349206349206, 0.7142857142857143, 0.7142857142857143, 0.7142857142857143, 0.7142857142857143, 0.015873015873015872, 0.01904761904761905, 0.01904761904761905, 0.01904761904761905, 0.01904761904761905, 0.01904761904761905, 0.01904761904761905, 0.01904761904761905, 0.01904761904761905, 0.01904761904761905, 0.015873015873015872, 0.015873015873015872, 0.015873015873015872, 0.6349206349206349, 0.7873015873015873, 0.8603174603174604, 0.8761904761904762, 0.8857142857142857, 0.8825396825396825, 0.873015873015873, 0.8063492063492064, 0.7396825396825397, 0.6031746031746031, 0.31746031746031744, 0.6666666666666666, 0.1492063492063492, 0.6793650793650794, 0.06984126984126984, 0.044444444444444446, 0.04126984126984127, 0.01904761904761905, 0.022222222222222223, 0.022222222222222223, 0.01904761904761905, 0.015873015873015872, 0.015873015873015872, 0.012698412698412698, 0.012698412698412698, 0.012698412698412698, 0.012698412698412698, 0.012698412698412698, 0.009523809523809525, 0.009523809523809525, 0.012698412698412698, 0.012698412698412698, 0.012698412698412698, 0.012698412698412698, 0.012698412698412698, 0.012698412698412698, 0.012698412698412698, 0.009523809523809525, 0.009523809523809525, 0.009523809523809525, 0.009523809523809525, 0.009523809523809525, 0.009523809523809525, 0.009523809523809525, 0.012698412698412698, 0.050793650793650794, 0.8825396825396825, 0.8825396825396825, 0.01904761904761905, 0.01904761904761905, 0.01904761904761905, 0.01904761904761905, 0.022222222222222223, 0.025396825396825397, 0.022222222222222223, 0.022222222222222223, 0.022222222222222223, 0.022222222222222223, 0.022222222222222223, 0.022222222222222223, 0.022222222222222223, 0.022222222222222223, 0.031746031746031744, 0.031746031746031744, 0.03492063492063492, 0.044444444444444446, 0.044444444444444446, 0.047619047619047616, 0.050793650793650794, 0.050793650793650794, 0.05396825396825397, 0.07936507936507936, 0.1619047619047619], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF1068.gap.json b/pfam_gap_rates/DUF1068.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..0ef6b10d8a07ddb5297bb37c774710d95c1e35a7
--- /dev/null
+++ b/pfam_gap_rates/DUF1068.gap.json
@@ -0,0 +1 @@
+{"family": "DUF1068", "n_seqs": 107, "length": 182, "gap_rates": [0.6074766355140186, 0.3364485981308411, 0.3177570093457944, 0.3177570093457944, 0.3177570093457944, 0.29906542056074764, 0.29906542056074764, 0.29906542056074764, 0.29906542056074764, 0.29906542056074764, 0.2897196261682243, 0.2897196261682243, 0.2897196261682243, 0.2897196261682243, 0.2897196261682243, 0.2897196261682243, 0.2897196261682243, 0.2897196261682243, 0.2897196261682243, 0.2897196261682243, 0.2897196261682243, 0.2803738317757009, 0.2803738317757009, 0.2803738317757009, 0.2803738317757009, 0.2803738317757009, 0.2897196261682243, 0.2803738317757009, 0.2803738317757009, 0.34579439252336447, 0.3364485981308411, 0.9158878504672897, 0.9252336448598131, 0.8504672897196262, 0.514018691588785, 0.5514018691588785, 0.4205607476635514, 0.3644859813084112, 0.3364485981308411, 0.3177570093457944, 0.38317757009345793, 0.9252336448598131, 0.9252336448598131, 0.9439252336448598, 0.9252336448598131, 0.9252336448598131, 0.9252336448598131, 0.5981308411214953, 0.4485981308411215, 0.32710280373831774, 0.2616822429906542, 0.2616822429906542, 0.2616822429906542, 0.2616822429906542, 0.2616822429906542, 0.2616822429906542, 0.2616822429906542, 0.2616822429906542, 0.2523364485981308, 0.2523364485981308, 0.7102803738317757, 0.2523364485981308, 0.2523364485981308, 0.2523364485981308, 0.2616822429906542, 0.2616822429906542, 0.2616822429906542, 0.2616822429906542, 0.32710280373831774, 0.32710280373831774, 0.32710280373831774, 0.3364485981308411, 0.3177570093457944, 0.29906542056074764, 0.2336448598130841, 0.205607476635514, 0.102803738317757, 0.102803738317757, 0.11214953271028037, 0.11214953271028037, 0.11214953271028037, 0.102803738317757, 0.102803738317757, 0.11214953271028037, 0.102803738317757, 0.102803738317757, 0.11214953271028037, 0.897196261682243, 0.897196261682243, 0.897196261682243, 0.897196261682243, 0.897196261682243, 0.09345794392523364, 0.09345794392523364, 0.056074766355140186, 0.056074766355140186, 0.056074766355140186, 0.056074766355140186, 0.056074766355140186, 0.056074766355140186, 0.056074766355140186, 0.056074766355140186, 0.056074766355140186, 0.056074766355140186, 0.056074766355140186, 0.056074766355140186, 0.056074766355140186, 0.056074766355140186, 0.056074766355140186, 0.056074766355140186, 0.04672897196261682, 0.037383177570093455, 0.037383177570093455, 0.037383177570093455, 0.037383177570093455, 0.037383177570093455, 0.037383177570093455, 0.037383177570093455, 0.037383177570093455, 0.037383177570093455, 0.037383177570093455, 0.037383177570093455, 0.037383177570093455, 0.037383177570093455, 0.037383177570093455, 0.037383177570093455, 0.037383177570093455, 0.037383177570093455, 0.037383177570093455, 0.037383177570093455, 0.037383177570093455, 0.037383177570093455, 0.04672897196261682, 0.056074766355140186, 0.056074766355140186, 0.056074766355140186, 0.056074766355140186, 0.06542056074766354, 0.06542056074766354, 0.056074766355140186, 0.04672897196261682, 0.04672897196261682, 0.04672897196261682, 0.056074766355140186, 0.04672897196261682, 0.056074766355140186, 0.056074766355140186, 0.04672897196261682, 0.056074766355140186, 0.056074766355140186, 0.056074766355140186, 0.04672897196261682, 0.04672897196261682, 0.04672897196261682, 0.04672897196261682, 0.04672897196261682, 0.04672897196261682, 0.056074766355140186, 0.056074766355140186, 0.056074766355140186, 0.04672897196261682, 0.04672897196261682, 0.04672897196261682, 0.04672897196261682, 0.04672897196261682, 0.04672897196261682, 0.04672897196261682, 0.04672897196261682, 0.04672897196261682, 0.04672897196261682, 0.04672897196261682, 0.04672897196261682, 0.04672897196261682, 0.04672897196261682, 0.04672897196261682, 0.056074766355140186, 0.056074766355140186, 0.056074766355140186, 0.056074766355140186, 0.06542056074766354, 0.35514018691588783, 0.822429906542056], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF1097.gap.json b/pfam_gap_rates/DUF1097.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..523592f1b267303063c785b75b9b1a53341797c0
--- /dev/null
+++ b/pfam_gap_rates/DUF1097.gap.json
@@ -0,0 +1 @@
+{"family": "DUF1097", "n_seqs": 132, "length": 168, "gap_rates": [0.5909090909090909, 0.21212121212121213, 0.12878787878787878, 0.12878787878787878, 0.12878787878787878, 0.11363636363636363, 0.10606060606060606, 0.10606060606060606, 0.10606060606060606, 0.10606060606060606, 0.10606060606060606, 0.10606060606060606, 0.09090909090909091, 0.09848484848484848, 0.08333333333333333, 0.08333333333333333, 0.08333333333333333, 0.07575757575757576, 0.07575757575757576, 0.8257575757575758, 0.9242424242424242, 0.7954545454545454, 0.4621212121212121, 0.045454545454545456, 0.022727272727272728, 0.022727272727272728, 0.022727272727272728, 0.022727272727272728, 0.015151515151515152, 0.007575757575757576, 0.007575757575757576, 0.007575757575757576, 0.007575757575757576, 0.007575757575757576, 0.007575757575757576, 0.007575757575757576, 0.007575757575757576, 0.007575757575757576, 0.0, 0.0, 0.0, 0.7727272727272727, 0.0, 0.0, 0.0, 0.007575757575757576, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.946969696969697, 0.946969696969697, 0.045454545454545456, 0.030303030303030304, 0.030303030303030304, 0.3560606060606061, 0.20454545454545456, 0.0, 0.0, 0.007575757575757576, 0.007575757575757576, 0.015151515151515152, 0.11363636363636363, 0.553030303030303, 0.7954545454545454, 0.9015151515151515, 0.8181818181818182, 0.6893939393939394, 0.007575757575757576, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.007575757575757576, 0.0, 0.0, 0.007575757575757576, 0.015151515151515152, 0.007575757575757576, 0.015151515151515152, 0.9393939393939394, 0.03787878787878788, 0.9166666666666666, 0.03787878787878788, 0.022727272727272728, 0.015151515151515152, 0.015151515151515152, 0.015151515151515152, 0.015151515151515152, 0.015151515151515152, 0.015151515151515152, 0.015151515151515152, 0.015151515151515152, 0.015151515151515152, 0.015151515151515152, 0.015151515151515152, 0.015151515151515152, 0.015151515151515152, 0.32575757575757575, 0.3181818181818182, 0.3181818181818182, 0.32575757575757575, 0.4318181818181818, 0.4318181818181818, 0.4318181818181818, 0.45454545454545453, 0.45454545454545453, 0.7045454545454546, 0.7651515151515151, 0.8787878787878788, 0.9242424242424242, 0.9393939393939394, 0.8863636363636364, 0.8409090909090909, 0.7045454545454546, 0.696969696969697, 0.09090909090909091, 0.09090909090909091, 0.08333333333333333, 0.045454545454545456, 0.03787878787878788, 0.030303030303030304, 0.030303030303030304, 0.030303030303030304, 0.030303030303030304, 0.030303030303030304, 0.030303030303030304, 0.030303030303030304, 0.030303030303030304, 0.030303030303030304, 0.030303030303030304, 0.03787878787878788, 0.045454545454545456, 0.045454545454545456, 0.8409090909090909, 0.05303030303030303, 0.06818181818181818, 0.06818181818181818, 0.10606060606060606, 0.17424242424242425, 0.20454545454545456, 0.2727272727272727, 0.48484848484848486], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF1153.gap.json b/pfam_gap_rates/DUF1153.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..8cb89593174b9f0f2bcff97e1bd201bccdf538b4
--- /dev/null
+++ b/pfam_gap_rates/DUF1153.gap.json
@@ -0,0 +1 @@
+{"family": "DUF1153", "n_seqs": 165, "length": 87, "gap_rates": [0.8848484848484849, 0.6181818181818182, 0.5575757575757576, 0.36363636363636365, 0.2, 0.18787878787878787, 0.18787878787878787, 0.18787878787878787, 0.17575757575757575, 0.16363636363636364, 0.16363636363636364, 0.16363636363636364, 0.15151515151515152, 0.15151515151515152, 0.15151515151515152, 0.1393939393939394, 0.09696969696969697, 0.09696969696969697, 0.09090909090909091, 0.07878787878787878, 0.07272727272727272, 0.06666666666666667, 0.048484848484848485, 0.05454545454545454, 0.01818181818181818, 0.006060606060606061, 0.006060606060606061, 0.024242424242424242, 0.006060606060606061, 0.006060606060606061, 0.006060606060606061, 0.006060606060606061, 0.006060606060606061, 0.006060606060606061, 0.006060606060606061, 0.006060606060606061, 0.006060606060606061, 0.006060606060606061, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.006060606060606061, 0.006060606060606061, 0.012121212121212121, 0.006060606060606061, 0.006060606060606061, 0.006060606060606061, 0.006060606060606061, 0.006060606060606061, 0.012121212121212121, 0.012121212121212121, 0.012121212121212121, 0.06666666666666667, 0.07878787878787878, 0.08484848484848485, 0.08484848484848485, 0.08484848484848485, 0.09090909090909091, 0.10303030303030303], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF1218.gap.json b/pfam_gap_rates/DUF1218.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..bd4024bd4ab81855fc92d6ade8c0e05b4e29f09c
--- /dev/null
+++ b/pfam_gap_rates/DUF1218.gap.json
@@ -0,0 +1 @@
+{"family": "DUF1218", "n_seqs": 416, "length": 115, "gap_rates": [0.2548076923076923, 0.14903846153846154, 0.12740384615384615, 0.11057692307692307, 0.09615384615384616, 0.09134615384615384, 0.08413461538461539, 0.08173076923076923, 0.08173076923076923, 0.08413461538461539, 0.08173076923076923, 0.08173076923076923, 0.07932692307692307, 0.07932692307692307, 0.11778846153846154, 0.09615384615384616, 0.09615384615384616, 0.07932692307692307, 0.07692307692307693, 0.8966346153846154, 0.7644230769230769, 0.09615384615384616, 0.09375, 0.08173076923076923, 0.07692307692307693, 0.08653846153846154, 0.09375, 0.9278846153846154, 0.09134615384615384, 0.125, 0.1201923076923077, 0.12740384615384615, 0.3581730769230769, 0.8076923076923077, 0.8870192307692307, 0.9206730769230769, 0.9326923076923077, 0.9375, 0.9495192307692307, 0.9423076923076923, 0.9350961538461539, 0.9254807692307693, 0.8990384615384616, 0.8798076923076923, 0.7716346153846154, 0.06490384615384616, 0.0625, 0.057692307692307696, 0.057692307692307696, 0.055288461538461536, 0.055288461538461536, 0.055288461538461536, 0.05048076923076923, 0.05048076923076923, 0.05048076923076923, 0.05048076923076923, 0.05048076923076923, 0.04567307692307692, 0.036057692307692304, 0.036057692307692304, 0.038461538461538464, 0.036057692307692304, 0.03365384615384615, 0.03365384615384615, 0.03365384615384615, 0.03365384615384615, 0.03125, 0.03125, 0.026442307692307692, 0.028846153846153848, 0.028846153846153848, 0.028846153846153848, 0.028846153846153848, 0.028846153846153848, 0.028846153846153848, 0.028846153846153848, 0.06490384615384616, 0.06490384615384616, 0.07451923076923077, 0.07211538461538461, 0.3389423076923077, 0.33413461538461536, 0.3581730769230769, 0.17307692307692307, 0.22596153846153846, 0.3798076923076923, 0.5865384615384616, 0.8894230769230769, 0.8990384615384616, 0.8028846153846154, 0.4495192307692308, 0.27884615384615385, 0.21875, 0.036057692307692304, 0.040865384615384616, 0.036057692307692304, 0.03125, 0.03365384615384615, 0.03365384615384615, 0.03365384615384615, 0.03365384615384615, 0.03365384615384615, 0.03365384615384615, 0.03365384615384615, 0.03365384615384615, 0.036057692307692304, 0.040865384615384616, 0.04326923076923077, 0.04326923076923077, 0.04326923076923077, 0.04326923076923077, 0.04326923076923077, 0.055288461538461536, 0.09615384615384616, 0.7211538461538461], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF1230.gap.json b/pfam_gap_rates/DUF1230.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..1dae282645ccb071bed45eb8aaf9b6b65c02ba54
--- /dev/null
+++ b/pfam_gap_rates/DUF1230.gap.json
@@ -0,0 +1 @@
+{"family": "DUF1230", "n_seqs": 129, "length": 144, "gap_rates": [0.37209302325581395, 0.13953488372093023, 0.06976744186046512, 0.06976744186046512, 0.06976744186046512, 0.06976744186046512, 0.06976744186046512, 0.06976744186046512, 0.06976744186046512, 0.06976744186046512, 0.06976744186046512, 0.06976744186046512, 0.06976744186046512, 0.06976744186046512, 0.06976744186046512, 0.06976744186046512, 0.06201550387596899, 0.06201550387596899, 0.06201550387596899, 0.06201550387596899, 0.06201550387596899, 0.06201550387596899, 0.06201550387596899, 0.06201550387596899, 0.06201550387596899, 0.06976744186046512, 0.07751937984496124, 0.06201550387596899, 0.07751937984496124, 0.07751937984496124, 0.06201550387596899, 0.06201550387596899, 0.06201550387596899, 0.06201550387596899, 0.06201550387596899, 0.06201550387596899, 0.06201550387596899, 0.06201550387596899, 0.06201550387596899, 0.06201550387596899, 0.06201550387596899, 0.06201550387596899, 0.06976744186046512, 0.06201550387596899, 0.06201550387596899, 0.06201550387596899, 0.06201550387596899, 0.06976744186046512, 0.5193798449612403, 0.06976744186046512, 0.06976744186046512, 0.06976744186046512, 0.06976744186046512, 0.06976744186046512, 0.8914728682170543, 0.06976744186046512, 0.06976744186046512, 0.06976744186046512, 0.06976744186046512, 0.07751937984496124, 0.08527131782945736, 0.08527131782945736, 0.06976744186046512, 0.07751937984496124, 0.06976744186046512, 0.06201550387596899, 0.06201550387596899, 0.06201550387596899, 0.06201550387596899, 0.06201550387596899, 0.06201550387596899, 0.06201550387596899, 0.06201550387596899, 0.06201550387596899, 0.06201550387596899, 0.06201550387596899, 0.06201550387596899, 0.06201550387596899, 0.06201550387596899, 0.06201550387596899, 0.06201550387596899, 0.06201550387596899, 0.05426356589147287, 0.06201550387596899, 0.03875968992248062, 0.03875968992248062, 0.03875968992248062, 0.03875968992248062, 0.03875968992248062, 0.03875968992248062, 0.03875968992248062, 0.03875968992248062, 0.03875968992248062, 0.03875968992248062, 0.05426356589147287, 0.05426356589147287, 0.05426356589147287, 0.05426356589147287, 0.05426356589147287, 0.05426356589147287, 0.05426356589147287, 0.05426356589147287, 0.03875968992248062, 0.031007751937984496, 0.03875968992248062, 0.03875968992248062, 0.03875968992248062, 0.06201550387596899, 0.06201550387596899, 0.03875968992248062, 0.031007751937984496, 0.031007751937984496, 0.03875968992248062, 0.06201550387596899, 0.06201550387596899, 0.06201550387596899, 0.06201550387596899, 0.06201550387596899, 0.06201550387596899, 0.06201550387596899, 0.06201550387596899, 0.06201550387596899, 0.06201550387596899, 0.06201550387596899, 0.06201550387596899, 0.06201550387596899, 0.06201550387596899, 0.06201550387596899, 0.06201550387596899, 0.06201550387596899, 0.06201550387596899, 0.06976744186046512, 0.06976744186046512, 0.07751937984496124, 0.07751937984496124, 0.07751937984496124, 0.07751937984496124, 0.08527131782945736, 0.08527131782945736, 0.08527131782945736, 0.08527131782945736, 0.09302325581395349, 0.12403100775193798, 0.3953488372093023], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF1275.gap.json b/pfam_gap_rates/DUF1275.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..fbe1655fee5fb5e028de4e1fa9b4ebaae72745b2
--- /dev/null
+++ b/pfam_gap_rates/DUF1275.gap.json
@@ -0,0 +1 @@
+{"family": "DUF1275", "n_seqs": 974, "length": 249, "gap_rates": [0.7987679671457906, 0.3193018480492813, 0.14681724845995894, 0.07392197125256673, 0.06365503080082136, 0.057494866529774126, 0.055441478439425054, 0.054414784394250515, 0.054414784394250515, 0.054414784394250515, 0.052361396303901436, 0.049281314168377825, 0.044147843942505136, 0.044147843942505136, 0.044147843942505136, 0.044147843942505136, 0.04209445585215606, 0.2813141683778234, 0.2032854209445585, 0.04722792607802875, 0.043121149897330596, 0.04209445585215606, 0.04004106776180698, 0.04004106776180698, 0.04004106776180698, 0.04004106776180698, 0.03593429158110883, 0.03490759753593429, 0.03490759753593429, 0.030800821355236138, 0.027720739219712527, 0.027720739219712527, 0.026694045174537988, 0.026694045174537988, 0.02566735112936345, 0.026694045174537988, 0.026694045174537988, 0.026694045174537988, 0.027720739219712527, 0.053388090349075976, 0.0811088295687885, 0.0811088295687885, 0.08521560574948665, 0.03285420944558522, 0.8798767967145791, 0.9260780287474333, 0.9147843942505134, 0.8162217659137577, 0.028747433264887063, 0.03285420944558522, 0.030800821355236138, 0.028747433264887063, 0.026694045174537988, 0.9291581108829569, 0.9137577002053389, 0.02566735112936345, 0.023613963039014373, 0.022587268993839837, 0.03285420944558522, 0.022587268993839837, 0.021560574948665298, 0.021560574948665298, 0.021560574948665298, 0.021560574948665298, 0.02053388090349076, 0.02053388090349076, 0.02053388090349076, 0.02053388090349076, 0.02053388090349076, 0.02053388090349076, 0.02053388090349076, 0.022587268993839837, 0.024640657084188913, 0.026694045174537988, 0.044147843942505136, 0.04106776180698152, 0.08624229979466119, 0.3921971252566735, 0.5164271047227926, 0.9425051334702259, 0.6529774127310062, 0.446611909650924, 0.3028747433264887, 0.05646817248459959, 0.033880903490759756, 0.02566735112936345, 0.021560574948665298, 0.022587268993839837, 0.024640657084188913, 0.023613963039014373, 0.023613963039014373, 0.022587268993839837, 0.022587268993839837, 0.02053388090349076, 0.7525667351129364, 0.8049281314168378, 0.7782340862422998, 0.7351129363449692, 0.022587268993839837, 0.023613963039014373, 0.022587268993839837, 0.022587268993839837, 0.02566735112936345, 0.02566735112936345, 0.022587268993839837, 0.02053388090349076, 0.029774127310061602, 0.026694045174537988, 0.17145790554414783, 0.04106776180698152, 0.12833675564681724, 0.12320328542094455, 0.13141683778234087, 0.364476386036961, 0.526694045174538, 0.11396303901437371, 0.4219712525667351, 0.5379876796714579, 0.6457905544147844, 0.731006160164271, 0.8018480492813141, 0.8552361396303901, 0.8737166324435318, 0.9034907597535934, 0.9260780287474333, 0.8952772073921971, 0.864476386036961, 0.8295687885010267, 0.7669404517453798, 0.6971252566735113, 0.5708418891170431, 0.5123203285420944, 0.3316221765913758, 0.026694045174537988, 0.024640657084188913, 0.023613963039014373, 0.023613963039014373, 0.023613963039014373, 0.024640657084188913, 0.024640657084188913, 0.024640657084188913, 0.024640657084188913, 0.024640657084188913, 0.024640657084188913, 0.023613963039014373, 0.023613963039014373, 0.023613963039014373, 0.023613963039014373, 0.023613963039014373, 0.20841889117043122, 0.026694045174537988, 0.022587268993839837, 0.8223819301848049, 0.06878850102669405, 0.037987679671457907, 0.027720739219712527, 0.027720739219712527, 0.9281314168377823, 0.026694045174537988, 0.026694045174537988, 0.02566735112936345, 0.026694045174537988, 0.026694045174537988, 0.026694045174537988, 0.02566735112936345, 0.02566735112936345, 0.02566735112936345, 0.02566735112936345, 0.02566735112936345, 0.02566735112936345, 0.02566735112936345, 0.02566735112936345, 0.02566735112936345, 0.026694045174537988, 0.027720739219712527, 0.07494866529774127, 0.039014373716632446, 0.03593429158110883, 0.04209445585215606, 0.049281314168377825, 0.8028747433264887, 0.9271047227926078, 0.3542094455852156, 0.0513347022587269, 0.13655030800821355, 0.11601642710472279, 0.8388090349075975, 0.23203285420944558, 0.38295687885010266, 0.6786447638603696, 0.8028747433264887, 0.8880903490759754, 0.9312114989733059, 0.9455852156057495, 0.9096509240246407, 0.8552361396303901, 0.7618069815195072, 0.4517453798767967, 0.31519507186858314, 0.14989733059548255, 0.29774127310061604, 0.9332648870636551, 0.1406570841889117, 0.12833675564681724, 0.09240246406570841, 0.059548254620123205, 0.060574948665297744, 0.039014373716632446, 0.9404517453798767, 0.944558521560575, 0.9291581108829569, 0.04004106776180698, 0.04004106776180698, 0.04004106776180698, 0.04004106776180698, 0.04004106776180698, 0.04106776180698152, 0.04106776180698152, 0.04209445585215606, 0.043121149897330596, 0.043121149897330596, 0.044147843942505136, 0.043121149897330596, 0.043121149897330596, 0.043121149897330596, 0.044147843942505136, 0.044147843942505136, 0.04722792607802875, 0.050308008213552365, 0.09958932238193019, 0.8706365503080082, 0.6899383983572895, 0.0646817248459959, 0.048254620123203286, 0.060574948665297744, 0.057494866529774126, 0.057494866529774126, 0.055441478439425054, 0.057494866529774126, 0.05646817248459959, 0.060574948665297744, 0.061601642710472276, 0.0646817248459959, 0.06776180698151951, 0.0728952772073922, 0.08932238193018481, 0.14271047227926079, 0.24127310061601642, 0.4702258726899384], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF1298.gap.json b/pfam_gap_rates/DUF1298.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..8c035dfdaaca964df473996d790d7fda84277331
--- /dev/null
+++ b/pfam_gap_rates/DUF1298.gap.json
@@ -0,0 +1 @@
+{"family": "DUF1298", "n_seqs": 928, "length": 159, "gap_rates": [0.7693965517241379, 0.3933189655172414, 0.19504310344827586, 0.17672413793103448, 0.1540948275862069, 0.1314655172413793, 0.12176724137931035, 0.11099137931034483, 0.10560344827586207, 0.10021551724137931, 0.09375, 0.09375, 0.09375, 0.09267241379310345, 0.09375, 0.09375, 0.7456896551724138, 0.09482758620689655, 0.08081896551724138, 0.07866379310344827, 0.06357758620689655, 0.061422413793103446, 0.05818965517241379, 0.057112068965517244, 0.05603448275862069, 0.05495689655172414, 0.05387931034482758, 0.052801724137931036, 0.052801724137931036, 0.052801724137931036, 0.05387931034482758, 0.052801724137931036, 0.052801724137931036, 0.052801724137931036, 0.052801724137931036, 0.052801724137931036, 0.052801724137931036, 0.05387931034482758, 0.05387931034482758, 0.05387931034482758, 0.052801724137931036, 0.04956896551724138, 0.04956896551724138, 0.04956896551724138, 0.05603448275862069, 0.05064655172413793, 0.05064655172413793, 0.05172413793103448, 0.04956896551724138, 0.5344827586206896, 0.05603448275862069, 0.05172413793103448, 0.04956896551724138, 0.04956896551724138, 0.04418103448275862, 0.04633620689655173, 0.03987068965517242, 0.040948275862068964, 0.04741379310344827, 0.04741379310344827, 0.05064655172413793, 0.05387931034482758, 0.8556034482758621, 0.9375, 0.8814655172413793, 0.84375, 0.09482758620689655, 0.11530172413793104, 0.10991379310344827, 0.06788793103448276, 0.6993534482758621, 0.7489224137931034, 0.8588362068965517, 0.9224137931034483, 0.9482758620689655, 0.8976293103448276, 0.8459051724137931, 0.7198275862068966, 0.6648706896551724, 0.06465517241379311, 0.05495689655172414, 0.04633620689655173, 0.04633620689655173, 0.04633620689655173, 0.04633620689655173, 0.04741379310344827, 0.04418103448275862, 0.04310344827586207, 0.04310344827586207, 0.04525862068965517, 0.04310344827586207, 0.04202586206896552, 0.04310344827586207, 0.04310344827586207, 0.04310344827586207, 0.059267241379310345, 0.04741379310344827, 0.04633620689655173, 0.04633620689655173, 0.04525862068965517, 0.04525862068965517, 0.04525862068965517, 0.04525862068965517, 0.04849137931034483, 0.04525862068965517, 0.04310344827586207, 0.04202586206896552, 0.04633620689655173, 0.04633620689655173, 0.04741379310344827, 0.04418103448275862, 0.04418103448275862, 0.04418103448275862, 0.04849137931034483, 0.05172413793103448, 0.3620689655172414, 0.08081896551724138, 0.07866379310344827, 0.05818965517241379, 0.05603448275862069, 0.05603448275862069, 0.05603448275862069, 0.057112068965517244, 0.057112068965517244, 0.057112068965517244, 0.057112068965517244, 0.059267241379310345, 0.059267241379310345, 0.057112068965517244, 0.057112068965517244, 0.059267241379310345, 0.059267241379310345, 0.059267241379310345, 0.059267241379310345, 0.0603448275862069, 0.061422413793103446, 0.06357758620689655, 0.07758620689655173, 0.07974137931034483, 0.08189655172413793, 0.07866379310344827, 0.15625, 0.08189655172413793, 0.08836206896551724, 0.09051724137931035, 0.09159482758620689, 0.09375, 0.09375, 0.09482758620689655, 0.09590517241379311, 0.09913793103448276, 0.10452586206896551, 0.11745689655172414, 0.1271551724137931, 0.13469827586206898, 0.1540948275862069, 0.2165948275862069, 0.30711206896551724, 0.8696120689655172], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF1318.gap.json b/pfam_gap_rates/DUF1318.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..9db3cf6cfa6dd7c8661ab2d6bbc805f1cb5953b8
--- /dev/null
+++ b/pfam_gap_rates/DUF1318.gap.json
@@ -0,0 +1 @@
+{"family": "DUF1318", "n_seqs": 207, "length": 104, "gap_rates": [0.7101449275362319, 0.3526570048309179, 0.18357487922705315, 0.11594202898550725, 0.06280193236714976, 0.03864734299516908, 0.024154589371980676, 0.00966183574879227, 0.00966183574879227, 0.00966183574879227, 0.00966183574879227, 0.00966183574879227, 0.00966183574879227, 0.00966183574879227, 0.00966183574879227, 0.00966183574879227, 0.00966183574879227, 0.00966183574879227, 0.00966183574879227, 0.00966183574879227, 0.00966183574879227, 0.00966183574879227, 0.00966183574879227, 0.00966183574879227, 0.00966183574879227, 0.00966183574879227, 0.00966183574879227, 0.00966183574879227, 0.00966183574879227, 0.00966183574879227, 0.6811594202898551, 0.8357487922705314, 0.855072463768116, 0.8502415458937198, 0.8260869565217391, 0.5169082125603864, 0.2995169082125604, 0.09178743961352658, 0.07729468599033816, 0.04830917874396135, 0.04830917874396135, 0.00966183574879227, 0.7971014492753623, 0.8019323671497585, 0.7971014492753623, 0.7971014492753623, 0.00966183574879227, 0.00966183574879227, 0.004830917874396135, 0.004830917874396135, 0.004830917874396135, 0.004830917874396135, 0.004830917874396135, 0.004830917874396135, 0.004830917874396135, 0.004830917874396135, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.004830917874396135, 0.0, 0.0, 0.004830917874396135, 0.0, 0.0, 0.0, 0.714975845410628, 0.927536231884058, 0.6956521739130435, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.004830917874396135, 0.00966183574879227, 0.014492753623188406, 0.014492753623188406, 0.01932367149758454, 0.024154589371980676, 0.024154589371980676, 0.024154589371980676, 0.024154589371980676, 0.024154589371980676, 0.024154589371980676, 0.16908212560386474, 0.033816425120772944, 0.033816425120772944, 0.033816425120772944, 0.06763285024154589, 0.033816425120772944, 0.033816425120772944, 0.06763285024154589, 0.1111111111111111], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF1326.gap.json b/pfam_gap_rates/DUF1326.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d9b60f7427a960e4133318602d60849067bbe008
--- /dev/null
+++ b/pfam_gap_rates/DUF1326.gap.json
@@ -0,0 +1 @@
+{"family": "DUF1326", "n_seqs": 126, "length": 202, "gap_rates": [0.5793650793650794, 0.10317460317460317, 0.09523809523809523, 0.09523809523809523, 0.0873015873015873, 0.0873015873015873, 0.0873015873015873, 0.0873015873015873, 0.0873015873015873, 0.07142857142857142, 0.06349206349206349, 0.06349206349206349, 0.6746031746031746, 0.7222222222222222, 0.6587301587301587, 0.05555555555555555, 0.047619047619047616, 0.047619047619047616, 0.047619047619047616, 0.047619047619047616, 0.03968253968253968, 0.031746031746031744, 0.023809523809523808, 0.023809523809523808, 0.06349206349206349, 0.023809523809523808, 0.023809523809523808, 0.023809523809523808, 0.015873015873015872, 0.007936507936507936, 0.007936507936507936, 0.007936507936507936, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.007936507936507936, 0.007936507936507936, 0.015873015873015872, 0.015873015873015872, 0.023809523809523808, 0.023809523809523808, 0.031746031746031744, 0.023809523809523808, 0.8888888888888888, 0.9206349206349206, 0.873015873015873, 0.007936507936507936, 0.007936507936507936, 0.007936507936507936, 0.007936507936507936, 0.015873015873015872, 0.007936507936507936, 0.0, 0.0, 0.0, 0.0, 0.0, 0.015873015873015872, 0.007936507936507936, 0.0, 0.007936507936507936, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.007936507936507936, 0.007936507936507936, 0.007936507936507936, 0.015873015873015872, 0.015873015873015872, 0.015873015873015872, 0.023809523809523808, 0.07936507936507936, 0.07936507936507936, 0.7777777777777778, 0.8412698412698413, 0.7936507936507936, 0.7222222222222222, 0.07936507936507936, 0.07936507936507936, 0.06349206349206349, 0.06349206349206349, 0.047619047619047616, 0.023809523809523808, 0.015873015873015872, 0.015873015873015872, 0.015873015873015872, 0.015873015873015872, 0.023809523809523808, 0.023809523809523808, 0.03968253968253968, 0.023809523809523808, 0.023809523809523808, 0.023809523809523808, 0.023809523809523808, 0.015873015873015872, 0.015873015873015872, 0.015873015873015872, 0.015873015873015872, 0.015873015873015872, 0.031746031746031744, 0.031746031746031744, 0.023809523809523808, 0.023809523809523808, 0.7142857142857143, 0.7063492063492064, 0.031746031746031744, 0.031746031746031744, 0.031746031746031744, 0.031746031746031744, 0.031746031746031744, 0.031746031746031744, 0.031746031746031744, 0.03968253968253968, 0.031746031746031744, 0.031746031746031744, 0.03968253968253968, 0.031746031746031744, 0.031746031746031744, 0.031746031746031744, 0.031746031746031744, 0.031746031746031744, 0.031746031746031744, 0.031746031746031744, 0.03968253968253968, 0.05555555555555555, 0.06349206349206349, 0.0873015873015873, 0.07142857142857142, 0.07142857142857142, 0.30158730158730157, 0.06349206349206349, 0.06349206349206349, 0.06349206349206349, 0.06349206349206349, 0.06349206349206349, 0.3253968253968254, 0.753968253968254, 0.873015873015873, 0.9047619047619048, 0.873015873015873, 0.7698412698412699, 0.7301587301587301, 0.07936507936507936, 0.07142857142857142, 0.07936507936507936, 0.07142857142857142, 0.07936507936507936, 0.9365079365079365, 0.42063492063492064, 0.24603174603174602, 0.23015873015873015, 0.21428571428571427, 0.09523809523809523, 0.09523809523809523, 0.09523809523809523, 0.1111111111111111, 0.09523809523809523, 0.1111111111111111, 0.46825396825396826, 0.8492063492063492, 0.9365079365079365, 0.9365079365079365, 0.9206349206349206, 0.7301587301587301, 0.11904761904761904, 0.11904761904761904, 0.12698412698412698, 0.12698412698412698, 0.1349206349206349, 0.1349206349206349, 0.1349206349206349, 0.1349206349206349, 0.15079365079365079, 0.15873015873015872, 0.1746031746031746, 0.2222222222222222, 0.25396825396825395, 0.31746031746031744, 0.49206349206349204, 0.8015873015873016], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF1428.gap.json b/pfam_gap_rates/DUF1428.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ae53b55057378216c48c6712464444b444ec05f3
--- /dev/null
+++ b/pfam_gap_rates/DUF1428.gap.json
@@ -0,0 +1 @@
+{"family": "DUF1428", "n_seqs": 241, "length": 111, "gap_rates": [0.34439834024896265, 0.024896265560165973, 0.012448132780082987, 0.004149377593360996, 0.004149377593360996, 0.004149377593360996, 0.004149377593360996, 0.004149377593360996, 0.004149377593360996, 0.008298755186721992, 0.008298755186721992, 0.004149377593360996, 0.004149377593360996, 0.004149377593360996, 0.004149377593360996, 0.004149377593360996, 0.004149377593360996, 0.004149377593360996, 0.004149377593360996, 0.004149377593360996, 0.004149377593360996, 0.004149377593360996, 0.004149377593360996, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.004149377593360996, 0.941908713692946, 0.941908713692946, 0.941908713692946, 0.9336099585062241, 0.0, 0.0, 0.004149377593360996, 0.941908713692946, 0.004149377593360996, 0.004149377593360996, 0.004149377593360996, 0.004149377593360996, 0.008298755186721992, 0.008298755186721992, 0.012448132780082987, 0.012448132780082987, 0.008298755186721992, 0.012448132780082987, 0.012448132780082987, 0.012448132780082987, 0.012448132780082987, 0.012448132780082987, 0.012448132780082987, 0.012448132780082987, 0.012448132780082987, 0.012448132780082987, 0.012448132780082987, 0.012448132780082987, 0.012448132780082987, 0.012448132780082987, 0.012448132780082987, 0.012448132780082987, 0.012448132780082987, 0.012448132780082987, 0.012448132780082987, 0.012448132780082987, 0.012448132780082987, 0.012448132780082987, 0.012448132780082987, 0.012448132780082987, 0.016597510373443983, 0.016597510373443983, 0.016597510373443983, 0.02074688796680498, 0.024896265560165973, 0.024896265560165973, 0.02074688796680498, 0.02074688796680498, 0.024896265560165973, 0.6473029045643154, 0.14522821576763487, 0.7676348547717843, 0.921161825726141, 0.8381742738589212, 0.6680497925311203, 0.07468879668049792, 0.07053941908713693, 0.07053941908713693, 0.07468879668049792, 0.07468879668049792, 0.07883817427385892, 0.08713692946058091, 0.2946058091286307], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF1489.gap.json b/pfam_gap_rates/DUF1489.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e73b6c2ffb2002978cec258cc5b74664f8877ff8
--- /dev/null
+++ b/pfam_gap_rates/DUF1489.gap.json
@@ -0,0 +1 @@
+{"family": "DUF1489", "n_seqs": 167, "length": 142, "gap_rates": [0.041916167664670656, 0.03592814371257485, 0.03592814371257485, 0.03592814371257485, 0.03592814371257485, 0.029940119760479042, 0.029940119760479042, 0.029940119760479042, 0.029940119760479042, 0.029940119760479042, 0.029940119760479042, 0.029940119760479042, 0.029940119760479042, 0.023952095808383235, 0.023952095808383235, 0.023952095808383235, 0.023952095808383235, 0.023952095808383235, 0.6706586826347305, 0.7005988023952096, 0.6766467065868264, 0.6407185628742516, 0.3592814371257485, 0.33532934131736525, 0.2155688622754491, 0.10179640718562874, 0.07784431137724551, 0.0658682634730539, 0.023952095808383235, 0.023952095808383235, 0.017964071856287425, 0.017964071856287425, 0.017964071856287425, 0.011976047904191617, 0.011976047904191617, 0.011976047904191617, 0.011976047904191617, 0.011976047904191617, 0.011976047904191617, 0.005988023952095809, 0.005988023952095809, 0.005988023952095809, 0.005988023952095809, 0.005988023952095809, 0.011976047904191617, 0.005988023952095809, 0.005988023952095809, 0.005988023952095809, 0.005988023952095809, 0.1317365269461078, 0.005988023952095809, 0.005988023952095809, 0.005988023952095809, 0.005988023952095809, 0.005988023952095809, 0.005988023952095809, 0.005988023952095809, 0.005988023952095809, 0.005988023952095809, 0.005988023952095809, 0.005988023952095809, 0.005988023952095809, 0.005988023952095809, 0.005988023952095809, 0.005988023952095809, 0.005988023952095809, 0.005988023952095809, 0.005988023952095809, 0.005988023952095809, 0.005988023952095809, 0.005988023952095809, 0.005988023952095809, 0.005988023952095809, 0.011976047904191617, 0.023952095808383235, 0.017964071856287425, 0.1437125748502994, 0.1317365269461078, 0.11377245508982035, 0.1317365269461078, 0.005988023952095809, 0.005988023952095809, 0.011976047904191617, 0.005988023952095809, 0.005988023952095809, 0.0, 0.0, 0.0, 0.0, 0.0, 0.005988023952095809, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.011976047904191617, 0.005988023952095809, 0.0, 0.0, 0.0, 0.0, 0.0, 0.023952095808383235, 0.005988023952095809, 0.005988023952095809, 0.1377245508982036, 0.1437125748502994, 0.2994011976047904, 0.5868263473053892, 0.029940119760479042, 0.011976047904191617, 0.011976047904191617, 0.005988023952095809, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.19161676646706588], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF1508.gap.json b/pfam_gap_rates/DUF1508.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c8edd24cea712f8d2e1e702cc3b48fd613814cf2
--- /dev/null
+++ b/pfam_gap_rates/DUF1508.gap.json
@@ -0,0 +1 @@
+{"family": "DUF1508", "n_seqs": 454, "length": 49, "gap_rates": [0.5418502202643172, 0.2444933920704846, 0.11894273127753303, 0.08149779735682819, 0.05506607929515418, 0.024229074889867842, 0.011013215859030838, 0.006607929515418502, 0.006607929515418502, 0.004405286343612335, 0.006607929515418502, 0.006607929515418502, 0.05726872246696035, 0.00881057268722467, 0.0022026431718061676, 0.0022026431718061676, 0.0022026431718061676, 0.0, 0.0, 0.0022026431718061676, 0.7863436123348018, 0.0, 0.004405286343612335, 0.004405286343612335, 0.004405286343612335, 0.004405286343612335, 0.004405286343612335, 0.006607929515418502, 0.006607929515418502, 0.006607929515418502, 0.006607929515418502, 0.011013215859030838, 0.013215859030837005, 0.01762114537444934, 0.022026431718061675, 0.022026431718061675, 0.028634361233480177, 0.030837004405286344, 0.037444933920704845, 0.046255506607929514, 0.06828193832599119, 0.07268722466960352, 0.10792951541850221, 0.11674008810572688, 0.13876651982378854, 0.15859030837004406, 0.19162995594713655, 0.29295154185022027, 0.3876651982378855], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF1513.gap.json b/pfam_gap_rates/DUF1513.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..dba9591e961c16593b883ef5984dc29c85b6669a
--- /dev/null
+++ b/pfam_gap_rates/DUF1513.gap.json
@@ -0,0 +1 @@
+{"family": "DUF1513", "n_seqs": 131, "length": 325, "gap_rates": [0.9236641221374046, 0.17557251908396945, 0.10687022900763359, 0.0916030534351145, 0.08396946564885496, 0.06870229007633588, 0.06870229007633588, 0.061068702290076333, 0.061068702290076333, 0.05343511450381679, 0.05343511450381679, 0.05343511450381679, 0.05343511450381679, 0.05343511450381679, 0.19083969465648856, 0.061068702290076333, 0.05343511450381679, 0.05343511450381679, 0.05343511450381679, 0.05343511450381679, 0.05343511450381679, 0.05343511450381679, 0.05343511450381679, 0.05343511450381679, 0.05343511450381679, 0.05343511450381679, 0.05343511450381679, 0.05343511450381679, 0.05343511450381679, 0.05343511450381679, 0.04580152671755725, 0.03816793893129771, 0.03816793893129771, 0.03816793893129771, 0.03816793893129771, 0.06870229007633588, 0.03816793893129771, 0.03816793893129771, 0.03816793893129771, 0.03816793893129771, 0.03816793893129771, 0.06870229007633588, 0.03816793893129771, 0.03816793893129771, 0.03816793893129771, 0.03816793893129771, 0.03816793893129771, 0.030534351145038167, 0.030534351145038167, 0.030534351145038167, 0.030534351145038167, 0.030534351145038167, 0.030534351145038167, 0.030534351145038167, 0.030534351145038167, 0.030534351145038167, 0.030534351145038167, 0.030534351145038167, 0.03816793893129771, 0.05343511450381679, 0.04580152671755725, 0.030534351145038167, 0.03816793893129771, 0.03816793893129771, 0.030534351145038167, 0.030534351145038167, 0.030534351145038167, 0.030534351145038167, 0.030534351145038167, 0.030534351145038167, 0.030534351145038167, 0.030534351145038167, 0.916030534351145, 0.030534351145038167, 0.030534351145038167, 0.030534351145038167, 0.030534351145038167, 0.030534351145038167, 0.030534351145038167, 0.030534351145038167, 0.030534351145038167, 0.030534351145038167, 0.030534351145038167, 0.030534351145038167, 0.030534351145038167, 0.030534351145038167, 0.8625954198473282, 0.24427480916030533, 0.030534351145038167, 0.030534351145038167, 0.030534351145038167, 0.030534351145038167, 0.030534351145038167, 0.022900763358778626, 0.022900763358778626, 0.030534351145038167, 0.022900763358778626, 0.022900763358778626, 0.022900763358778626, 0.022900763358778626, 0.022900763358778626, 0.022900763358778626, 0.030534351145038167, 0.030534351145038167, 0.030534351145038167, 0.030534351145038167, 0.03816793893129771, 0.04580152671755725, 0.03816793893129771, 0.030534351145038167, 0.030534351145038167, 0.03816793893129771, 0.9389312977099237, 0.9465648854961832, 0.9389312977099237, 0.22137404580152673, 0.03816793893129771, 0.03816793893129771, 0.03816793893129771, 0.03816793893129771, 0.03816793893129771, 0.03816793893129771, 0.03816793893129771, 0.03816793893129771, 0.03816793893129771, 0.03816793893129771, 0.03816793893129771, 0.03816793893129771, 0.16793893129770993, 0.16793893129770993, 0.16793893129770993, 0.19083969465648856, 0.08396946564885496, 0.061068702290076333, 0.04580152671755725, 0.04580152671755725, 0.04580152671755725, 0.05343511450381679, 0.04580152671755725, 0.04580152671755725, 0.04580152671755725, 0.04580152671755725, 0.03816793893129771, 0.03816793893129771, 0.04580152671755725, 0.04580152671755725, 0.04580152671755725, 0.04580152671755725, 0.33587786259541985, 0.08396946564885496, 0.04580152671755725, 0.04580152671755725, 0.05343511450381679, 0.05343511450381679, 0.05343511450381679, 0.05343511450381679, 0.03816793893129771, 0.03816793893129771, 0.06870229007633588, 0.061068702290076333, 0.061068702290076333, 0.29770992366412213, 0.2824427480916031, 0.10687022900763359, 0.0916030534351145, 0.03816793893129771, 0.06870229007633588, 0.06870229007633588, 0.03816793893129771, 0.03816793893129771, 0.03816793893129771, 0.03816793893129771, 0.03816793893129771, 0.03816793893129771, 0.03816793893129771, 0.03816793893129771, 0.04580152671755725, 0.04580152671755725, 0.8931297709923665, 0.9083969465648855, 0.9465648854961832, 0.9312977099236641, 0.8931297709923665, 0.8778625954198473, 0.05343511450381679, 0.04580152671755725, 0.03816793893129771, 0.03816793893129771, 0.03816793893129771, 0.03816793893129771, 0.03816793893129771, 0.03816793893129771, 0.03816793893129771, 0.03816793893129771, 0.03816793893129771, 0.03816793893129771, 0.09923664122137404, 0.05343511450381679, 0.061068702290076333, 0.03816793893129771, 0.03816793893129771, 0.03816793893129771, 0.03816793893129771, 0.03816793893129771, 0.03816793893129771, 0.03816793893129771, 0.03816793893129771, 0.03816793893129771, 0.03816793893129771, 0.03816793893129771, 0.03816793893129771, 0.1297709923664122, 0.9465648854961832, 0.04580152671755725, 0.04580152671755725, 0.04580152671755725, 0.04580152671755725, 0.04580152671755725, 0.04580152671755725, 0.06870229007633588, 0.08396946564885496, 0.07633587786259542, 0.08396946564885496, 0.11450381679389313, 0.05343511450381679, 0.04580152671755725, 0.04580152671755725, 0.03816793893129771, 0.030534351145038167, 0.030534351145038167, 0.030534351145038167, 0.030534351145038167, 0.030534351145038167, 0.030534351145038167, 0.03816793893129771, 0.03816793893129771, 0.061068702290076333, 0.061068702290076333, 0.0916030534351145, 0.13740458015267176, 0.15267175572519084, 0.09923664122137404, 0.03816793893129771, 0.07633587786259542, 0.03816793893129771, 0.03816793893129771, 0.03816793893129771, 0.03816793893129771, 0.03816793893129771, 0.03816793893129771, 0.03816793893129771, 0.03816793893129771, 0.03816793893129771, 0.03816793893129771, 0.04580152671755725, 0.03816793893129771, 0.25190839694656486, 0.04580152671755725, 0.03816793893129771, 0.03816793893129771, 0.030534351145038167, 0.030534351145038167, 0.030534351145038167, 0.030534351145038167, 0.030534351145038167, 0.030534351145038167, 0.03816793893129771, 0.03816793893129771, 0.03816793893129771, 0.03816793893129771, 0.03816793893129771, 0.03816793893129771, 0.03816793893129771, 0.03816793893129771, 0.03816793893129771, 0.03816793893129771, 0.03816793893129771, 0.03816793893129771, 0.03816793893129771, 0.03816793893129771, 0.03816793893129771, 0.7786259541984732, 0.6335877862595419, 0.09923664122137404, 0.05343511450381679, 0.05343511450381679, 0.04580152671755725, 0.04580152671755725, 0.04580152671755725, 0.04580152671755725, 0.04580152671755725, 0.04580152671755725, 0.9083969465648855, 0.9083969465648855, 0.061068702290076333, 0.06870229007633588, 0.061068702290076333, 0.061068702290076333, 0.07633587786259542, 0.13740458015267176, 0.1297709923664122, 0.12213740458015267, 0.1297709923664122, 0.1450381679389313, 0.17557251908396945, 0.22900763358778625, 0.6259541984732825, 0.5572519083969466, 0.5343511450381679, 0.24427480916030533, 0.19083969465648856, 0.9236641221374046, 0.8702290076335878, 0.10687022900763359, 0.07633587786259542, 0.06870229007633588, 0.06870229007633588, 0.06870229007633588, 0.06870229007633588, 0.06870229007633588, 0.06870229007633588, 0.06870229007633588, 0.06870229007633588, 0.29770992366412213, 0.8778625954198473], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF1599.gap.json b/pfam_gap_rates/DUF1599.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..fd09170991853db069a66009955594592cb039bb
--- /dev/null
+++ b/pfam_gap_rates/DUF1599.gap.json
@@ -0,0 +1 @@
+{"family": "DUF1599", "n_seqs": 290, "length": 63, "gap_rates": [0.006896551724137931, 0.006896551724137931, 0.006896551724137931, 0.006896551724137931, 0.006896551724137931, 0.006896551724137931, 0.006896551724137931, 0.006896551724137931, 0.006896551724137931, 0.9482758620689655, 0.006896551724137931, 0.006896551724137931, 0.0034482758620689655, 0.0034482758620689655, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.04827586206896552, 0.04827586206896552, 0.04827586206896552, 0.04827586206896552, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.5241379310344828, 0.020689655172413793, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0034482758620689655, 0.006896551724137931, 0.041379310344827586, 0.1206896551724138], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF1611.gap.json b/pfam_gap_rates/DUF1611.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..3b65c4e3e3277879bfffc78663162921158d4a0c
--- /dev/null
+++ b/pfam_gap_rates/DUF1611.gap.json
@@ -0,0 +1 @@
+{"family": "DUF1611", "n_seqs": 256, "length": 318, "gap_rates": [0.58984375, 0.48046875, 0.33203125, 0.24609375, 0.22265625, 0.203125, 0.19140625, 0.18359375, 0.17578125, 0.16796875, 0.1875, 0.484375, 0.484375, 0.484375, 0.484375, 0.48828125, 0.734375, 0.4921875, 0.09765625, 0.0859375, 0.0859375, 0.08203125, 0.08203125, 0.08203125, 0.078125, 0.0703125, 0.06640625, 0.0625, 0.08203125, 0.0703125, 0.77734375, 0.94140625, 0.94921875, 0.94921875, 0.8125, 0.7578125, 0.48046875, 0.1015625, 0.06640625, 0.0625, 0.0625, 0.0625, 0.0625, 0.0625, 0.0546875, 0.0546875, 0.0546875, 0.0546875, 0.0546875, 0.0546875, 0.0546875, 0.0546875, 0.0546875, 0.0546875, 0.0546875, 0.07421875, 0.07421875, 0.07421875, 0.07421875, 0.07421875, 0.0546875, 0.0546875, 0.0546875, 0.0546875, 0.0546875, 0.0546875, 0.0546875, 0.0546875, 0.0546875, 0.0546875, 0.0546875, 0.0546875, 0.0546875, 0.0546875, 0.046875, 0.046875, 0.046875, 0.046875, 0.046875, 0.04296875, 0.04296875, 0.04296875, 0.09375, 0.08984375, 0.046875, 0.04296875, 0.0390625, 0.0390625, 0.046875, 0.04296875, 0.0546875, 0.05078125, 0.05078125, 0.1484375, 0.0390625, 0.03515625, 0.03515625, 0.03515625, 0.03515625, 0.03515625, 0.03515625, 0.03515625, 0.03125, 0.03125, 0.734375, 0.03125, 0.04296875, 0.03125, 0.02734375, 0.734375, 0.03125, 0.0234375, 0.02734375, 0.02734375, 0.0234375, 0.0234375, 0.01953125, 0.01953125, 0.44921875, 0.4453125, 0.015625, 0.01171875, 0.01171875, 0.01171875, 0.01171875, 0.01171875, 0.01171875, 0.01171875, 0.01171875, 0.01171875, 0.01171875, 0.01171875, 0.01171875, 0.01171875, 0.01171875, 0.01171875, 0.01171875, 0.01171875, 0.01171875, 0.01171875, 0.01171875, 0.01171875, 0.01171875, 0.01171875, 0.01171875, 0.01171875, 0.01171875, 0.01171875, 0.01171875, 0.01171875, 0.01171875, 0.01171875, 0.015625, 0.015625, 0.015625, 0.015625, 0.01953125, 0.01953125, 0.0234375, 0.0234375, 0.0234375, 0.02734375, 0.02734375, 0.02734375, 0.02734375, 0.02734375, 0.703125, 0.03515625, 0.03125, 0.03125, 0.03125, 0.03125, 0.03125, 0.03125, 0.03125, 0.03125, 0.02734375, 0.02734375, 0.02734375, 0.02734375, 0.02734375, 0.02734375, 0.02734375, 0.02734375, 0.02734375, 0.02734375, 0.02734375, 0.02734375, 0.02734375, 0.02734375, 0.02734375, 0.02734375, 0.02734375, 0.02734375, 0.33984375, 0.734375, 0.24609375, 0.0546875, 0.62109375, 0.03515625, 0.03515625, 0.03515625, 0.03125, 0.03125, 0.03125, 0.03125, 0.03125, 0.03125, 0.03125, 0.03125, 0.03125, 0.03125, 0.03125, 0.03125, 0.17578125, 0.03125, 0.03125, 0.26171875, 0.03125, 0.02734375, 0.02734375, 0.02734375, 0.02734375, 0.03125, 0.03125, 0.03125, 0.03125, 0.03125, 0.03125, 0.03125, 0.03125, 0.03125, 0.03125, 0.03515625, 0.03515625, 0.03515625, 0.03515625, 0.0625, 0.06640625, 0.06640625, 0.06640625, 0.05859375, 0.05859375, 0.05859375, 0.08984375, 0.13671875, 0.09765625, 0.9375, 0.109375, 0.078125, 0.078125, 0.046875, 0.046875, 0.046875, 0.046875, 0.046875, 0.046875, 0.046875, 0.046875, 0.046875, 0.046875, 0.046875, 0.046875, 0.046875, 0.046875, 0.046875, 0.046875, 0.078125, 0.33203125, 0.44140625, 0.8515625, 0.8515625, 0.33984375, 0.33203125, 0.32421875, 0.0625, 0.0546875, 0.0546875, 0.05078125, 0.05078125, 0.05859375, 0.06640625, 0.0703125, 0.07421875, 0.07421875, 0.07421875, 0.078125, 0.09765625, 0.08984375, 0.08984375, 0.08984375, 0.08203125, 0.08203125, 0.08203125, 0.08203125, 0.08203125, 0.078125, 0.08203125, 0.078125, 0.078125, 0.078125, 0.078125, 0.078125, 0.078125, 0.078125, 0.078125, 0.078125, 0.078125, 0.078125, 0.078125, 0.078125, 0.08203125, 0.11328125, 0.1171875, 0.1484375, 0.18359375, 0.21484375, 0.45703125], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF1616.gap.json b/pfam_gap_rates/DUF1616.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..92a4f51bd5c4256a4df359bd1e5d59cee4ed384c
--- /dev/null
+++ b/pfam_gap_rates/DUF1616.gap.json
@@ -0,0 +1 @@
+{"family": "DUF1616", "n_seqs": 100, "length": 323, "gap_rates": [0.9, 0.66, 0.52, 0.41, 0.36, 0.34, 0.34, 0.33, 0.34, 0.34, 0.33, 0.33, 0.32, 0.31, 0.31, 0.31, 0.3, 0.3, 0.29, 0.29, 0.26, 0.26, 0.26, 0.24, 0.2, 0.18, 0.18, 0.17, 0.17, 0.17, 0.17, 0.17, 0.17, 0.17, 0.17, 0.17, 0.16, 0.16, 0.17, 0.16, 0.17, 0.16, 0.16, 0.17, 0.19, 0.17, 0.81, 0.81, 0.84, 0.85, 0.87, 0.88, 0.91, 0.92, 0.91, 0.88, 0.87, 0.85, 0.81, 0.81, 0.78, 0.18, 0.2, 0.16, 0.16, 0.16, 0.16, 0.16, 0.16, 0.16, 0.16, 0.16, 0.16, 0.16, 0.16, 0.16, 0.16, 0.16, 0.16, 0.16, 0.17, 0.17, 0.17, 0.18, 0.17, 0.17, 0.17, 0.19, 0.19, 0.19, 0.21, 0.21, 0.17, 0.2, 0.17, 0.17, 0.17, 0.17, 0.19, 0.18, 0.18, 0.18, 0.19, 0.18, 0.18, 0.18, 0.18, 0.18, 0.18, 0.18, 0.18, 0.17, 0.17, 0.18, 0.2, 0.24, 0.25, 0.23, 0.23, 0.25, 0.27, 0.33, 0.33, 0.37, 0.37, 0.4, 0.42, 0.41, 0.43, 0.43, 0.44, 0.5, 0.58, 0.58, 0.57, 0.57, 0.54, 0.52, 0.49, 0.48, 0.48, 0.48, 0.48, 0.49, 0.49, 0.48, 0.65, 0.94, 0.57, 0.6, 0.61, 0.56, 0.48, 0.46, 0.41, 0.4, 0.39, 0.37, 0.36, 0.35, 0.35, 0.35, 0.35, 0.35, 0.35, 0.38, 0.37, 0.36, 0.36, 0.37, 0.37, 0.36, 0.36, 0.36, 0.36, 0.36, 0.36, 0.36, 0.95, 0.41, 0.36, 0.36, 0.39, 0.37, 0.36, 0.36, 0.36, 0.36, 0.36, 0.36, 0.36, 0.36, 0.36, 0.36, 0.36, 0.37, 0.85, 0.86, 0.84, 0.83, 0.37, 0.37, 0.38, 0.38, 0.38, 0.38, 0.38, 0.38, 0.37, 0.37, 0.37, 0.38, 0.38, 0.37, 0.37, 0.37, 0.37, 0.37, 0.37, 0.37, 0.37, 0.37, 0.37, 0.37, 0.37, 0.37, 0.37, 0.37, 0.37, 0.37, 0.37, 0.37, 0.37, 0.37, 0.37, 0.37, 0.37, 0.37, 0.38, 0.64, 0.81, 0.84, 0.93, 0.95, 0.86, 0.81, 0.74, 0.68, 0.7, 0.62, 0.62, 0.61, 0.58, 0.64, 0.65, 0.61, 0.58, 0.48, 0.38, 0.38, 0.37, 0.36, 0.36, 0.36, 0.36, 0.36, 0.36, 0.36, 0.36, 0.36, 0.36, 0.36, 0.36, 0.36, 0.36, 0.36, 0.36, 0.36, 0.36, 0.36, 0.36, 0.36, 0.36, 0.38, 0.38, 0.37, 0.54, 0.38, 0.38, 0.38, 0.38, 0.38, 0.38, 0.38, 0.38, 0.39, 0.41, 0.42, 0.91, 0.93, 0.95, 0.94, 0.91, 0.74, 0.72, 0.71, 0.69, 0.66, 0.55, 0.46, 0.45, 0.44, 0.45, 0.45, 0.45, 0.46, 0.47, 0.47, 0.46, 0.46, 0.49, 0.5, 0.56], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF1624.gap.json b/pfam_gap_rates/DUF1624.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..9d072a1ca36e95818470c31d775b34a765b70399
--- /dev/null
+++ b/pfam_gap_rates/DUF1624.gap.json
@@ -0,0 +1 @@
+{"family": "DUF1624", "n_seqs": 776, "length": 295, "gap_rates": [0.10309278350515463, 0.10051546391752578, 0.09278350515463918, 0.08247422680412371, 0.06958762886597938, 0.06572164948453608, 0.06572164948453608, 0.06056701030927835, 0.059278350515463915, 0.059278350515463915, 0.05798969072164949, 0.05798969072164949, 0.055412371134020616, 0.055412371134020616, 0.05412371134020619, 0.045103092783505154, 0.04381443298969072, 0.04381443298969072, 0.045103092783505154, 0.05670103092783505, 0.09407216494845361, 0.9420103092783505, 0.9420103092783505, 0.11984536082474227, 0.14304123711340205, 0.17396907216494845, 0.1713917525773196, 0.13402061855670103, 0.1134020618556701, 0.09664948453608248, 0.07603092783505154, 0.07087628865979381, 0.06958762886597938, 0.06572164948453608, 0.11211340206185567, 0.10438144329896908, 0.13015463917525774, 0.15335051546391754, 0.49871134020618557, 0.2538659793814433, 0.15206185567010308, 0.09922680412371133, 0.06572164948453608, 0.05412371134020619, 0.03865979381443299, 0.03350515463917526, 0.03221649484536082, 0.04381443298969072, 0.9381443298969072, 0.05283505154639175, 0.04381443298969072, 0.023195876288659795, 0.023195876288659795, 0.023195876288659795, 0.023195876288659795, 0.023195876288659795, 0.023195876288659795, 0.023195876288659795, 0.023195876288659795, 0.023195876288659795, 0.01804123711340206, 0.01804123711340206, 0.019329896907216496, 0.019329896907216496, 0.019329896907216496, 0.019329896907216496, 0.15206185567010308, 0.14175257731958762, 0.1404639175257732, 0.14304123711340205, 0.14690721649484537, 0.1713917525773196, 0.163659793814433, 0.4007731958762887, 0.5128865979381443, 0.7358247422680413, 0.8492268041237113, 0.9432989690721649, 0.8041237113402062, 0.6791237113402062, 0.45489690721649484, 0.37371134020618557, 0.030927835051546393, 0.030927835051546393, 0.028350515463917526, 0.02577319587628866, 0.024484536082474227, 0.024484536082474227, 0.027061855670103094, 0.030927835051546393, 0.028350515463917526, 0.024484536082474227, 0.02190721649484536, 0.02190721649484536, 0.02577319587628866, 0.028350515463917526, 0.02577319587628866, 0.03350515463917526, 0.03608247422680412, 0.03221649484536082, 0.03221649484536082, 0.03865979381443299, 0.03865979381443299, 0.04252577319587629, 0.7525773195876289, 0.7873711340206185, 0.8350515463917526, 0.8518041237113402, 0.8182989690721649, 0.7654639175257731, 0.7087628865979382, 0.10824742268041238, 0.09536082474226804, 0.07345360824742268, 0.06829896907216494, 0.9304123711340206, 0.07474226804123711, 0.07216494845360824, 0.06701030927835051, 0.07345360824742268, 0.7693298969072165, 0.06958762886597938, 0.07474226804123711, 0.06056701030927835, 0.9239690721649485, 0.9420103092783505, 0.9471649484536082, 0.9432989690721649, 0.9342783505154639, 0.9162371134020618, 0.02577319587628866, 0.024484536082474227, 0.02577319587628866, 0.024484536082474227, 0.024484536082474227, 0.02577319587628866, 0.030927835051546393, 0.030927835051546393, 0.030927835051546393, 0.03350515463917526, 0.03350515463917526, 0.03350515463917526, 0.03608247422680412, 0.04381443298969072, 0.06958762886597938, 0.8518041237113402, 0.9394329896907216, 0.895618556701031, 0.7667525773195877, 0.125, 0.12886597938144329, 0.13015463917525774, 0.13402061855670103, 0.13659793814432988, 0.1404639175257732, 0.14690721649484537, 0.14690721649484537, 0.1559278350515464, 0.15721649484536082, 0.21649484536082475, 0.16237113402061856, 0.15850515463917525, 0.15979381443298968, 0.15721649484536082, 0.16237113402061856, 0.17654639175257733, 0.22036082474226804, 0.21391752577319587, 0.20618556701030927, 0.20618556701030927, 0.20876288659793815, 0.22293814432989692, 0.2268041237113402, 0.8144329896907216, 0.8221649484536082, 0.8389175257731959, 0.8492268041237113, 0.8685567010309279, 0.8853092783505154, 0.9097938144329897, 0.9368556701030928, 0.9458762886597938, 0.9445876288659794, 0.9239690721649485, 0.8943298969072165, 0.8724226804123711, 0.854381443298969, 0.845360824742268, 0.836340206185567, 0.8182989690721649, 0.8092783505154639, 0.25902061855670105, 0.75, 0.8041237113402062, 0.8350515463917526, 0.8801546391752577, 0.9239690721649485, 0.9484536082474226, 0.9394329896907216, 0.9072164948453608, 0.8646907216494846, 0.8182989690721649, 0.7719072164948454, 0.7384020618556701, 0.23582474226804123, 0.2422680412371134, 0.24355670103092783, 0.2422680412371134, 0.23324742268041238, 0.9110824742268041, 0.9252577319587629, 0.8994845360824743, 0.2345360824742268, 0.22938144329896906, 0.23840206185567012, 0.24355670103092783, 0.24355670103092783, 0.24871134020618557, 0.29510309278350516, 0.28350515463917525, 0.27448453608247425, 0.8518041237113402, 0.895618556701031, 0.9226804123711341, 0.9497422680412371, 0.9123711340206185, 0.8737113402061856, 0.8131443298969072, 0.29381443298969073, 0.2667525773195876, 0.25257731958762886, 0.2422680412371134, 0.23840206185567012, 0.24484536082474226, 0.23840206185567012, 0.24871134020618557, 0.24613402061855671, 0.23582474226804123, 0.23840206185567012, 0.23711340206185566, 0.23840206185567012, 0.23711340206185566, 0.23840206185567012, 0.23840206185567012, 0.23840206185567012, 0.23840206185567012, 0.23840206185567012, 0.23840206185567012, 0.23840206185567012, 0.23840206185567012, 0.23840206185567012, 0.23840206185567012, 0.23840206185567012, 0.23840206185567012, 0.24097938144329897, 0.25, 0.25644329896907214, 0.26417525773195877, 0.27190721649484534, 0.8994845360824743, 0.5914948453608248, 0.5734536082474226, 0.5489690721649485, 0.5322164948453608, 0.5502577319587629, 0.5425257731958762, 0.6817010309278351, 0.6701030927835051, 0.6804123711340206, 0.6597938144329897, 0.6469072164948454, 0.6469072164948454, 0.6559278350515464, 0.6430412371134021, 0.6391752577319587, 0.6417525773195877, 0.6417525773195877, 0.6417525773195877, 0.6494845360824743, 0.6533505154639175, 0.654639175257732, 0.6585051546391752, 0.6610824742268041, 0.6765463917525774, 0.6791237113402062, 0.6829896907216495, 0.6868556701030928, 0.6920103092783505, 0.6932989690721649, 0.6932989690721649, 0.6997422680412371, 0.7061855670103093, 0.7087628865979382, 0.7126288659793815, 0.7242268041237113], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF1641.gap.json b/pfam_gap_rates/DUF1641.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..96bf4e8841040338b1479731f2c3656401c0748a
--- /dev/null
+++ b/pfam_gap_rates/DUF1641.gap.json
@@ -0,0 +1 @@
+{"family": "DUF1641", "n_seqs": 212, "length": 39, "gap_rates": [0.7735849056603774, 0.5518867924528302, 0.3915094339622642, 0.27358490566037735, 0.18867924528301888, 0.13679245283018868, 0.07547169811320754, 0.04245283018867924, 0.8773584905660378, 0.014150943396226415, 0.014150943396226415, 0.0047169811320754715, 0.0047169811320754715, 0.0047169811320754715, 0.0047169811320754715, 0.0047169811320754715, 0.0047169811320754715, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.08490566037735849, 0.08490566037735849, 0.08490566037735849, 0.08490566037735849, 0.09433962264150944, 0.10377358490566038, 0.10377358490566038, 0.10377358490566038, 0.10849056603773585, 0.16981132075471697, 0.18396226415094338, 0.2028301886792453, 0.25, 0.4716981132075472], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF1644.gap.json b/pfam_gap_rates/DUF1644.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..efc833706c18770a921b40bdc162eda16cb30ada
--- /dev/null
+++ b/pfam_gap_rates/DUF1644.gap.json
@@ -0,0 +1 @@
+{"family": "DUF1644", "n_seqs": 250, "length": 230, "gap_rates": [0.352, 0.248, 0.208, 0.2, 0.2, 0.2, 0.2, 0.2, 0.176, 0.176, 0.176, 0.176, 0.176, 0.176, 0.176, 0.176, 0.176, 0.176, 0.176, 0.176, 0.176, 0.176, 0.18, 0.18, 0.172, 0.172, 0.172, 0.176, 0.176, 0.176, 0.172, 0.172, 0.172, 0.172, 0.172, 0.172, 0.172, 0.172, 0.172, 0.172, 0.172, 0.172, 0.172, 0.172, 0.172, 0.172, 0.172, 0.172, 0.188, 0.196, 0.2, 0.2, 0.208, 0.216, 0.244, 0.26, 0.264, 0.28, 0.284, 0.284, 0.288, 0.296, 0.328, 0.332, 0.344, 0.344, 0.376, 0.436, 0.516, 0.536, 0.54, 0.544, 0.56, 0.6, 0.644, 0.668, 0.652, 0.624, 0.8, 0.804, 0.804, 0.812, 0.812, 0.812, 0.812, 0.812, 0.824, 0.824, 0.84, 0.844, 0.856, 0.856, 0.864, 0.868, 0.868, 0.876, 0.876, 0.876, 0.884, 0.904, 0.904, 0.904, 0.908, 0.908, 0.912, 0.912, 0.912, 0.924, 0.948, 0.932, 0.916, 0.912, 0.912, 0.908, 0.908, 0.904, 0.904, 0.904, 0.904, 0.88, 0.876, 0.876, 0.872, 0.868, 0.868, 0.864, 0.856, 0.848, 0.84, 0.836, 0.824, 0.812, 0.812, 0.812, 0.812, 0.812, 0.812, 0.804, 0.8, 0.8, 0.556, 0.372, 0.26, 0.236, 0.212, 0.2, 0.184, 0.172, 0.172, 0.168, 0.168, 0.164, 0.168, 0.164, 0.164, 0.164, 0.164, 0.16, 0.16, 0.16, 0.16, 0.16, 0.16, 0.16, 0.16, 0.16, 0.16, 0.16, 0.16, 0.16, 0.164, 0.164, 0.16, 0.16, 0.16, 0.16, 0.16, 0.16, 0.16, 0.164, 0.164, 0.168, 0.168, 0.168, 0.168, 0.164, 0.164, 0.16, 0.16, 0.16, 0.16, 0.16, 0.164, 0.164, 0.164, 0.164, 0.164, 0.164, 0.164, 0.168, 0.168, 0.168, 0.172, 0.172, 0.172, 0.172, 0.172, 0.172, 0.172, 0.176, 0.18, 0.18, 0.18, 0.18, 0.18, 0.18, 0.18, 0.18, 0.18, 0.18, 0.18, 0.18, 0.18, 0.18, 0.18, 0.18, 0.18, 0.188, 0.192, 0.24], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF1657.gap.json b/pfam_gap_rates/DUF1657.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..201723a34c7c2cdb799692090d8f653b25df269a
--- /dev/null
+++ b/pfam_gap_rates/DUF1657.gap.json
@@ -0,0 +1 @@
+{"family": "DUF1657", "n_seqs": 266, "length": 49, "gap_rates": [0.40601503759398494, 0.19548872180451127, 0.10150375939849623, 0.02631578947368421, 0.018796992481203006, 0.011278195488721804, 0.0037593984962406013, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0037593984962406013, 0.0, 0.0037593984962406013, 0.0037593984962406013, 0.0037593984962406013, 0.0037593984962406013, 0.0037593984962406013, 0.0037593984962406013, 0.0037593984962406013, 0.0037593984962406013, 0.0037593984962406013, 0.0037593984962406013, 0.007518796992481203, 0.007518796992481203, 0.015037593984962405, 0.02631578947368421, 0.041353383458646614, 0.06015037593984962, 0.12406015037593984, 0.2706766917293233], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF1667.gap.json b/pfam_gap_rates/DUF1667.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..5ce967018ebcc901178a28e5522f913c103df93c
--- /dev/null
+++ b/pfam_gap_rates/DUF1667.gap.json
@@ -0,0 +1 @@
+{"family": "DUF1667", "n_seqs": 313, "length": 83, "gap_rates": [0.3035143769968051, 0.13099041533546327, 0.08945686900958466, 0.08945686900958466, 0.08626198083067092, 0.08626198083067092, 0.08626198083067092, 0.08306709265175719, 0.08306709265175719, 0.08306709265175719, 0.08306709265175719, 0.07987220447284345, 0.07348242811501597, 0.04472843450479233, 0.02875399361022364, 0.019169329073482427, 0.012779552715654952, 0.012779552715654952, 0.012779552715654952, 0.012779552715654952, 0.009584664536741214, 0.009584664536741214, 0.009584664536741214, 0.009584664536741214, 0.01597444089456869, 0.9265175718849841, 0.01597444089456869, 0.01597444089456869, 0.06070287539936102, 0.04472843450479233, 0.012779552715654952, 0.009584664536741214, 0.009584664536741214, 0.009584664536741214, 0.009584664536741214, 0.009584664536741214, 0.009584664536741214, 0.009584664536741214, 0.009584664536741214, 0.009584664536741214, 0.009584664536741214, 0.009584664536741214, 0.009584664536741214, 0.009584664536741214, 0.009584664536741214, 0.009584664536741214, 0.009584664536741214, 0.009584664536741214, 0.006389776357827476, 0.006389776357827476, 0.006389776357827476, 0.006389776357827476, 0.006389776357827476, 0.006389776357827476, 0.006389776357827476, 0.006389776357827476, 0.006389776357827476, 0.006389776357827476, 0.006389776357827476, 0.006389776357827476, 0.006389776357827476, 0.006389776357827476, 0.006389776357827476, 0.006389776357827476, 0.006389776357827476, 0.006389776357827476, 0.006389776357827476, 0.006389776357827476, 0.006389776357827476, 0.006389776357827476, 0.019169329073482427, 0.019169329073482427, 0.012779552715654952, 0.012779552715654952, 0.01597444089456869, 0.019169329073482427, 0.009584664536741214, 0.01597444089456869, 0.019169329073482427, 0.022364217252396165, 0.022364217252396165, 0.04472843450479233, 0.24281150159744408], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF1691.gap.json b/pfam_gap_rates/DUF1691.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ca75130786ab6d01e397d9e83a48a33dc6a3f42c
--- /dev/null
+++ b/pfam_gap_rates/DUF1691.gap.json
@@ -0,0 +1 @@
+{"family": "DUF1691", "n_seqs": 129, "length": 147, "gap_rates": [0.5891472868217055, 0.12403100775193798, 0.03875968992248062, 0.03875968992248062, 0.03875968992248062, 0.03875968992248062, 0.03875968992248062, 0.03875968992248062, 0.03875968992248062, 0.03875968992248062, 0.03875968992248062, 0.031007751937984496, 0.031007751937984496, 0.015503875968992248, 0.015503875968992248, 0.015503875968992248, 0.015503875968992248, 0.18604651162790697, 0.07751937984496124, 0.03875968992248062, 0.015503875968992248, 0.015503875968992248, 0.007751937984496124, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.023255813953488372, 0.023255813953488372, 0.023255813953488372, 0.0, 0.0, 0.0, 0.9147286821705426, 0.9302325581395349, 0.9302325581395349, 0.9147286821705426, 0.9147286821705426, 0.31007751937984496, 0.29457364341085274, 0.23255813953488372, 0.023255813953488372, 0.0, 0.0, 0.0, 0.0, 0.0, 0.007751937984496124, 0.007751937984496124, 0.007751937984496124, 0.007751937984496124, 0.007751937984496124, 0.007751937984496124, 0.007751937984496124, 0.007751937984496124, 0.007751937984496124, 0.007751937984496124, 0.007751937984496124, 0.007751937984496124, 0.3875968992248062, 0.3798449612403101, 0.24806201550387597, 0.26356589147286824, 0.2713178294573643, 0.05426356589147287, 0.5968992248062015, 0.6744186046511628, 0.7596899224806202, 0.7906976744186046, 0.8217054263565892, 0.8372093023255814, 0.8682170542635659, 0.8914728682170543, 0.937984496124031, 0.9457364341085271, 0.9224806201550387, 0.8682170542635659, 0.8527131782945736, 0.8294573643410853, 0.813953488372093, 0.7751937984496124, 0.7286821705426356, 0.6511627906976745, 0.5813953488372093, 0.10077519379844961, 0.4728682170542636, 0.4728682170542636, 0.4806201550387597, 0.46511627906976744, 0.24031007751937986, 0.4883720930232558, 0.5891472868217055, 0.7906976744186046, 0.8914728682170543, 0.937984496124031, 0.9302325581395349, 0.8294573643410853, 0.7209302325581395, 0.5193798449612403, 0.4418604651162791, 0.17829457364341086, 0.1937984496124031, 0.18604651162790697, 0.15503875968992248, 0.13953488372093023, 0.16279069767441862, 0.17054263565891473, 0.3178294573643411, 0.3023255813953488, 0.31007751937984496, 0.29457364341085274, 0.2868217054263566, 0.3178294573643411, 0.32558139534883723, 0.3178294573643411, 0.3178294573643411, 0.3488372093023256, 0.3643410852713178, 0.3488372093023256, 0.3643410852713178, 0.3643410852713178, 0.3643410852713178, 0.37209302325581395, 0.3798449612403101, 0.4418604651162791, 0.3953488372093023, 0.3953488372093023, 0.9147286821705426, 0.9224806201550387, 0.9457364341085271, 0.9224806201550387, 0.9224806201550387, 0.9147286821705426, 0.40310077519379844, 0.4186046511627907, 0.43410852713178294, 0.4418604651162791, 0.4573643410852713, 0.46511627906976744, 0.5271317829457365, 0.5813953488372093], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF1708.gap.json b/pfam_gap_rates/DUF1708.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..065dac26f47160962ce98c3ebab83bcacb98fa11
--- /dev/null
+++ b/pfam_gap_rates/DUF1708.gap.json
@@ -0,0 +1 @@
+{"family": "DUF1708", "n_seqs": 155, "length": 566, "gap_rates": [0.864516129032258, 0.5161290322580645, 0.4645161290322581, 0.4129032258064516, 0.2903225806451613, 0.24516129032258063, 0.24516129032258063, 0.22580645161290322, 0.2064516129032258, 0.18064516129032257, 0.18064516129032257, 0.18064516129032257, 0.16774193548387098, 0.16774193548387098, 0.16774193548387098, 0.16774193548387098, 0.16774193548387098, 0.16774193548387098, 0.17419354838709677, 0.16774193548387098, 0.16774193548387098, 0.18064516129032257, 0.9225806451612903, 0.18064516129032257, 0.18064516129032257, 0.18064516129032257, 0.18064516129032257, 0.18064516129032257, 0.18064516129032257, 0.18064516129032257, 0.16774193548387098, 0.16774193548387098, 0.16774193548387098, 0.16774193548387098, 0.16774193548387098, 0.16129032258064516, 0.15483870967741936, 0.15483870967741936, 0.15483870967741936, 0.15483870967741936, 0.14838709677419354, 0.14838709677419354, 0.14838709677419354, 0.14838709677419354, 0.14838709677419354, 0.14838709677419354, 0.14838709677419354, 0.14838709677419354, 0.14838709677419354, 0.14838709677419354, 0.14838709677419354, 0.15483870967741936, 0.9161290322580645, 0.9290322580645162, 0.8709677419354839, 0.5290322580645161, 0.4838709677419355, 0.5612903225806452, 0.5290322580645161, 0.36129032258064514, 0.3032258064516129, 0.25161290322580643, 0.2064516129032258, 0.17419354838709677, 0.13548387096774195, 0.13548387096774195, 0.13548387096774195, 0.13548387096774195, 0.13548387096774195, 0.12903225806451613, 0.12903225806451613, 0.12258064516129032, 0.12258064516129032, 0.12258064516129032, 0.9096774193548387, 0.12258064516129032, 0.12258064516129032, 0.12258064516129032, 0.11612903225806452, 0.12258064516129032, 0.12903225806451613, 0.12903225806451613, 0.12903225806451613, 0.12258064516129032, 0.12258064516129032, 0.11612903225806452, 0.11612903225806452, 0.11612903225806452, 0.9354838709677419, 0.9354838709677419, 0.11612903225806452, 0.11612903225806452, 0.11612903225806452, 0.11612903225806452, 0.11612903225806452, 0.9225806451612903, 0.9290322580645162, 0.9354838709677419, 0.9419354838709677, 0.9419354838709677, 0.9290322580645162, 0.9290322580645162, 0.9225806451612903, 0.11612903225806452, 0.9225806451612903, 0.9225806451612903, 0.9225806451612903, 0.9225806451612903, 0.9225806451612903, 0.11612903225806452, 0.8451612903225807, 0.1032258064516129, 0.1032258064516129, 0.09032258064516129, 0.08387096774193549, 0.08387096774193549, 0.08387096774193549, 0.08387096774193549, 0.08387096774193549, 0.08387096774193549, 0.08387096774193549, 0.08387096774193549, 0.09032258064516129, 0.0967741935483871, 0.0967741935483871, 0.09032258064516129, 0.9419354838709677, 0.9483870967741935, 0.9483870967741935, 0.9483870967741935, 0.9419354838709677, 0.07741935483870968, 0.06451612903225806, 0.06451612903225806, 0.06451612903225806, 0.06451612903225806, 0.06451612903225806, 0.06451612903225806, 0.06451612903225806, 0.06451612903225806, 0.06451612903225806, 0.07096774193548387, 0.07096774193548387, 0.07096774193548387, 0.07096774193548387, 0.06451612903225806, 0.06451612903225806, 0.11612903225806452, 0.12258064516129032, 0.3096774193548387, 0.14838709677419354, 0.09032258064516129, 0.08387096774193549, 0.08387096774193549, 0.05806451612903226, 0.05806451612903226, 0.06451612903225806, 0.05806451612903226, 0.05806451612903226, 0.05806451612903226, 0.05806451612903226, 0.05806451612903226, 0.05806451612903226, 0.05806451612903226, 0.05806451612903226, 0.05806451612903226, 0.05806451612903226, 0.05806451612903226, 0.05806451612903226, 0.07741935483870968, 0.07741935483870968, 0.07741935483870968, 0.05806451612903226, 0.05806451612903226, 0.05806451612903226, 0.05806451612903226, 0.05806451612903226, 0.05806451612903226, 0.05806451612903226, 0.05806451612903226, 0.05806451612903226, 0.05806451612903226, 0.05806451612903226, 0.05806451612903226, 0.05806451612903226, 0.05806451612903226, 0.05806451612903226, 0.05806451612903226, 0.05806451612903226, 0.05806451612903226, 0.9290322580645162, 0.9419354838709677, 0.9354838709677419, 0.9290322580645162, 0.05806451612903226, 0.13548387096774195, 0.1032258064516129, 0.09032258064516129, 0.06451612903225806, 0.7290322580645161, 0.8709677419354839, 0.9096774193548387, 0.9161290322580645, 0.9290322580645162, 0.9290322580645162, 0.9483870967741935, 0.9290322580645162, 0.9225806451612903, 0.9096774193548387, 0.896774193548387, 0.8516129032258064, 0.6838709677419355, 0.05806451612903226, 0.05806451612903226, 0.05806451612903226, 0.05806451612903226, 0.05806451612903226, 0.05806451612903226, 0.05806451612903226, 0.06451612903225806, 0.06451612903225806, 0.06451612903225806, 0.06451612903225806, 0.06451612903225806, 0.06451612903225806, 0.05806451612903226, 0.05806451612903226, 0.06451612903225806, 0.06451612903225806, 0.06451612903225806, 0.06451612903225806, 0.06451612903225806, 0.06451612903225806, 0.06451612903225806, 0.06451612903225806, 0.07096774193548387, 0.07096774193548387, 0.07096774193548387, 0.07096774193548387, 0.1032258064516129, 0.13548387096774195, 0.14838709677419354, 0.14838709677419354, 0.14838709677419354, 0.4967741935483871, 0.5483870967741935, 0.3935483870967742, 0.33548387096774196, 0.43870967741935485, 0.5290322580645161, 0.45806451612903226, 0.5806451612903226, 0.17419354838709677, 0.17419354838709677, 0.16774193548387098, 0.16129032258064516, 0.15483870967741936, 0.16129032258064516, 0.16129032258064516, 0.16129032258064516, 0.16129032258064516, 0.16129032258064516, 0.16774193548387098, 0.22580645161290322, 0.2967741935483871, 0.3096774193548387, 0.23870967741935484, 0.2, 0.24516129032258063, 0.2645161290322581, 0.3096774193548387, 0.896774193548387, 0.9483870967741935, 0.9225806451612903, 0.864516129032258, 0.33548387096774196, 0.3161290322580645, 0.3161290322580645, 0.3419354838709677, 0.3161290322580645, 0.3096774193548387, 0.3096774193548387, 0.3161290322580645, 0.3225806451612903, 0.9483870967741935, 0.7290322580645161, 0.7225806451612903, 0.7161290322580646, 0.7032258064516129, 0.3096774193548387, 0.34838709677419355, 0.3096774193548387, 0.33548387096774196, 0.3225806451612903, 0.3161290322580645, 0.3225806451612903, 0.33548387096774196, 0.33548387096774196, 0.32903225806451614, 0.3225806451612903, 0.32903225806451614, 0.32903225806451614, 0.32903225806451614, 0.3225806451612903, 0.3225806451612903, 0.3225806451612903, 0.3225806451612903, 0.3225806451612903, 0.3225806451612903, 0.3225806451612903, 0.3225806451612903, 0.3225806451612903, 0.9483870967741935, 0.9354838709677419, 0.8064516129032258, 0.8064516129032258, 0.7935483870967742, 0.7677419354838709, 0.7612903225806451, 0.7612903225806451, 0.7612903225806451, 0.7483870967741936, 0.7483870967741936, 0.3419354838709677, 0.3419354838709677, 0.3419354838709677, 0.33548387096774196, 0.33548387096774196, 0.3419354838709677, 0.4, 0.36129032258064514, 0.3419354838709677, 0.3548387096774194, 0.36129032258064514, 0.3548387096774194, 0.3419354838709677, 0.34838709677419355, 0.7806451612903226, 0.8903225806451613, 0.9354838709677419, 0.8580645161290322, 0.36129032258064514, 0.3548387096774194, 0.34838709677419355, 0.3548387096774194, 0.34838709677419355, 0.33548387096774196, 0.33548387096774196, 0.33548387096774196, 0.33548387096774196, 0.33548387096774196, 0.33548387096774196, 0.33548387096774196, 0.33548387096774196, 0.33548387096774196, 0.33548387096774196, 0.33548387096774196, 0.33548387096774196, 0.33548387096774196, 0.36774193548387096, 0.36774193548387096, 0.36129032258064514, 0.44516129032258067, 0.43870967741935485, 0.44516129032258067, 0.47096774193548385, 0.4774193548387097, 0.4838709677419355, 0.9032258064516129, 0.5870967741935483, 0.49032258064516127, 0.45806451612903226, 0.567741935483871, 0.8774193548387097, 0.9161290322580645, 0.9354838709677419, 0.9483870967741935, 0.9483870967741935, 0.9290322580645162, 0.9096774193548387, 0.5870967741935483, 0.535483870967742, 0.432258064516129, 0.44516129032258067, 0.43870967741935485, 0.432258064516129, 0.432258064516129, 0.432258064516129, 0.41935483870967744, 0.38064516129032255, 0.38064516129032255, 0.3741935483870968, 0.3741935483870968, 0.3548387096774194, 0.34838709677419355, 0.3548387096774194, 0.3548387096774194, 0.34838709677419355, 0.3548387096774194, 0.36129032258064514, 0.36129032258064514, 0.36774193548387096, 0.47096774193548385, 0.8903225806451613, 0.9483870967741935, 0.8, 0.45806451612903226, 0.5741935483870968, 0.7741935483870968, 0.5806451612903226, 0.45161290322580644, 0.4838709677419355, 0.4838709677419355, 0.4838709677419355, 0.49032258064516127, 0.4967741935483871, 0.4967741935483871, 0.5096774193548387, 0.5548387096774193, 0.5612903225806452, 0.5612903225806452, 0.567741935483871, 0.5741935483870968, 0.6774193548387096, 0.7741935483870968, 0.8838709677419355, 0.9419354838709677, 0.9096774193548387, 0.8387096774193549, 0.7354838709677419, 0.6, 0.567741935483871, 0.5612903225806452, 0.5612903225806452, 0.5612903225806452, 0.5161290322580645, 0.4967741935483871, 0.4967741935483871, 0.4967741935483871, 0.49032258064516127, 0.4838709677419355, 0.4838709677419355, 0.4774193548387097, 0.45161290322580644, 0.44516129032258067, 0.432258064516129, 0.4258064516129032, 0.41935483870967744, 0.41935483870967744, 0.34838709677419355, 0.34838709677419355, 0.34838709677419355, 0.34838709677419355, 0.3935483870967742, 0.4, 0.43870967741935485, 0.4258064516129032, 0.3741935483870968, 0.47096774193548385, 0.4774193548387097, 0.4774193548387097, 0.4774193548387097, 0.4774193548387097, 0.4838709677419355, 0.4838709677419355, 0.4838709677419355, 0.49032258064516127, 0.5032258064516129, 0.5225806451612903, 0.5419354838709678, 0.5612903225806452, 0.7290322580645161, 0.9096774193548387, 0.9483870967741935, 0.9354838709677419, 0.864516129032258, 0.6258064516129033, 0.5483870967741935, 0.535483870967742, 0.5032258064516129, 0.49032258064516127, 0.4838709677419355, 0.4838709677419355, 0.4838709677419355, 0.4838709677419355, 0.4774193548387097, 0.4774193548387097, 0.4774193548387097, 0.4774193548387097, 0.47096774193548385, 0.3741935483870968, 0.45161290322580644, 0.45806451612903226, 0.43870967741935485, 0.4258064516129032, 0.3870967741935484, 0.3935483870967742, 0.5032258064516129, 0.4258064516129032, 0.41935483870967744, 0.4064516129032258, 0.3935483870967742, 0.4129032258064516, 0.4064516129032258, 0.4967741935483871, 0.4645161290322581, 0.45806451612903226, 0.45161290322580644, 0.43870967741935485, 0.4258064516129032, 0.3741935483870968, 0.3741935483870968, 0.3741935483870968, 0.3741935483870968, 0.3741935483870968, 0.3741935483870968, 0.3741935483870968, 0.3741935483870968, 0.3741935483870968, 0.3741935483870968, 0.3741935483870968, 0.3741935483870968, 0.3741935483870968, 0.3741935483870968, 0.3741935483870968, 0.3741935483870968, 0.3741935483870968, 0.3741935483870968, 0.38064516129032255, 0.3935483870967742, 0.3935483870967742, 0.43870967741935485, 0.43870967741935485, 0.43870967741935485, 0.43870967741935485, 0.43870967741935485, 0.43870967741935485, 0.43870967741935485, 0.43870967741935485, 0.43870967741935485, 0.43870967741935485, 0.4129032258064516, 0.4129032258064516, 0.4129032258064516, 0.4129032258064516, 0.4129032258064516, 0.4129032258064516, 0.4129032258064516, 0.4129032258064516, 0.41935483870967744, 0.41935483870967744, 0.41935483870967744, 0.41935483870967744, 0.9290322580645162, 0.41935483870967744, 0.4258064516129032, 0.8516129032258064, 0.43870967741935485, 0.41935483870967744, 0.41935483870967744, 0.41935483870967744, 0.41935483870967744, 0.41935483870967744, 0.41935483870967744, 0.43870967741935485, 0.5483870967741935], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF1736.gap.json b/pfam_gap_rates/DUF1736.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..fb2500409343d9af029f2c43482a999b0fcf0248
--- /dev/null
+++ b/pfam_gap_rates/DUF1736.gap.json
@@ -0,0 +1 @@
+{"family": "DUF1736", "n_seqs": 286, "length": 74, "gap_rates": [0.40559440559440557, 0.24475524475524477, 0.20279720279720279, 0.19230769230769232, 0.15034965034965034, 0.1258741258741259, 0.11538461538461539, 0.09090909090909091, 0.08391608391608392, 0.07342657342657342, 0.06293706293706294, 0.05944055944055944, 0.05944055944055944, 0.05944055944055944, 0.05944055944055944, 0.055944055944055944, 0.04895104895104895, 0.045454545454545456, 0.04195804195804196, 0.28321678321678323, 0.03496503496503497, 0.03146853146853147, 0.024475524475524476, 0.02097902097902098, 0.02097902097902098, 0.017482517482517484, 0.013986013986013986, 0.02097902097902098, 0.013986013986013986, 0.013986013986013986, 0.013986013986013986, 0.013986013986013986, 0.013986013986013986, 0.013986013986013986, 0.013986013986013986, 0.013986013986013986, 0.006993006993006993, 0.01048951048951049, 0.01048951048951049, 0.006993006993006993, 0.006993006993006993, 0.006993006993006993, 0.01048951048951049, 0.006993006993006993, 0.006993006993006993, 0.006993006993006993, 0.006993006993006993, 0.01048951048951049, 0.013986013986013986, 0.013986013986013986, 0.017482517482517484, 0.017482517482517484, 0.017482517482517484, 0.024475524475524476, 0.027972027972027972, 0.03146853146853147, 0.024475524475524476, 0.024475524475524476, 0.04895104895104895, 0.03146853146853147, 0.03146853146853147, 0.03146853146853147, 0.03146853146853147, 0.03146853146853147, 0.03146853146853147, 0.03146853146853147, 0.03496503496503497, 0.03496503496503497, 0.04195804195804196, 0.045454545454545456, 0.05944055944055944, 0.08741258741258741, 0.1958041958041958, 0.9335664335664335], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF1738.gap.json b/pfam_gap_rates/DUF1738.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..bb67877345a2b637954634c93e519d11503447e7
--- /dev/null
+++ b/pfam_gap_rates/DUF1738.gap.json
@@ -0,0 +1 @@
+{"family": "DUF1738", "n_seqs": 329, "length": 135, "gap_rates": [0.6565349544072948, 0.2917933130699088, 0.18541033434650456, 0.1398176291793313, 0.1276595744680851, 0.11854103343465046, 0.11550151975683891, 0.11550151975683891, 0.11246200607902736, 0.1094224924012158, 0.10638297872340426, 0.10638297872340426, 0.10638297872340426, 0.10638297872340426, 0.10638297872340426, 0.10638297872340426, 0.9300911854103343, 0.10638297872340426, 0.1094224924012158, 0.1094224924012158, 0.11246200607902736, 0.10638297872340426, 0.10030395136778116, 0.0972644376899696, 0.0972644376899696, 0.0972644376899696, 0.0972644376899696, 0.09422492401215805, 0.7325227963525835, 0.7872340425531915, 0.5319148936170213, 0.4072948328267477, 0.24924012158054712, 0.17325227963525835, 0.13677811550151975, 0.0911854103343465, 0.08206686930091185, 0.08206686930091185, 0.0729483282674772, 0.06990881458966565, 0.0668693009118541, 0.3495440729483283, 0.060790273556231005, 0.0547112462006079, 0.0425531914893617, 0.030395136778115502, 0.02735562310030395, 0.02735562310030395, 0.030395136778115502, 0.0243161094224924, 0.02127659574468085, 0.02127659574468085, 0.02127659574468085, 0.02127659574468085, 0.02127659574468085, 0.02127659574468085, 0.02127659574468085, 0.015197568389057751, 0.23708206686930092, 0.23404255319148937, 0.23404255319148937, 0.22188449848024316, 0.0668693009118541, 0.06382978723404255, 0.060790273556231005, 0.0668693009118541, 0.05167173252279635, 0.0243161094224924, 0.0243161094224924, 0.0121580547112462, 0.0121580547112462, 0.0121580547112462, 0.0121580547112462, 0.0121580547112462, 0.0121580547112462, 0.015197568389057751, 0.015197568389057751, 0.015197568389057751, 0.015197568389057751, 0.015197568389057751, 0.015197568389057751, 0.0182370820668693, 0.02127659574468085, 0.0243161094224924, 0.0243161094224924, 0.02735562310030395, 0.02735562310030395, 0.02735562310030395, 0.030395136778115502, 0.030395136778115502, 0.030395136778115502, 0.02735562310030395, 0.030395136778115502, 0.0364741641337386, 0.03951367781155015, 0.03951367781155015, 0.0425531914893617, 0.06382978723404255, 0.06990881458966565, 0.06382978723404255, 0.060790273556231005, 0.0668693009118541, 0.0668693009118541, 0.1458966565349544, 0.19148936170212766, 0.270516717325228, 0.3799392097264438, 0.44376899696048633, 0.6474164133738601, 0.6595744680851063, 0.6504559270516718, 0.6413373860182371, 0.6534954407294833, 0.6899696048632219, 0.6139817629179332, 0.3495440729483283, 0.3191489361702128, 0.2765957446808511, 0.2674772036474164, 0.2553191489361702, 0.25835866261398177, 0.25835866261398177, 0.8480243161094225, 0.8693009118541033, 0.8145896656534954, 0.25835866261398177, 0.2674772036474164, 0.270516717325228, 0.2765957446808511, 0.2796352583586626, 0.3009118541033435, 0.3100303951367781, 0.3161094224924012, 0.3191489361702128, 0.3282674772036474], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF1761.gap.json b/pfam_gap_rates/DUF1761.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..8b80fac50f6bb218ce06a4a300608a28b78a7bd4
--- /dev/null
+++ b/pfam_gap_rates/DUF1761.gap.json
@@ -0,0 +1 @@
+{"family": "DUF1761", "n_seqs": 285, "length": 136, "gap_rates": [0.5824561403508772, 0.10877192982456141, 0.05964912280701754, 0.04912280701754386, 0.04912280701754386, 0.04912280701754386, 0.04912280701754386, 0.0456140350877193, 0.0456140350877193, 0.042105263157894736, 0.03859649122807018, 0.03859649122807018, 0.03859649122807018, 0.03859649122807018, 0.03859649122807018, 0.03859649122807018, 0.03859649122807018, 0.03859649122807018, 0.03859649122807018, 0.17894736842105263, 0.6912280701754386, 0.042105263157894736, 0.03508771929824561, 0.03859649122807018, 0.03859649122807018, 0.04912280701754386, 0.056140350877192984, 0.056140350877192984, 0.3929824561403509, 0.3684210526315789, 0.07017543859649122, 0.04912280701754386, 0.0456140350877193, 0.042105263157894736, 0.03508771929824561, 0.031578947368421054, 0.028070175438596492, 0.02456140350877193, 0.028070175438596492, 0.028070175438596492, 0.22456140350877193, 0.1649122807017544, 0.14385964912280702, 0.10877192982456141, 0.6035087719298246, 0.7087719298245614, 0.7719298245614035, 0.7368421052631579, 0.6877192982456141, 0.5228070175438596, 0.11228070175438597, 0.09473684210526316, 0.056140350877192984, 0.021052631578947368, 0.017543859649122806, 0.017543859649122806, 0.021052631578947368, 0.021052631578947368, 0.021052631578947368, 0.021052631578947368, 0.017543859649122806, 0.017543859649122806, 0.017543859649122806, 0.014035087719298246, 0.017543859649122806, 0.017543859649122806, 0.017543859649122806, 0.010526315789473684, 0.010526315789473684, 0.010526315789473684, 0.014035087719298246, 0.017543859649122806, 0.017543859649122806, 0.017543859649122806, 0.017543859649122806, 0.017543859649122806, 0.056140350877192984, 0.7859649122807018, 0.8736842105263158, 0.8596491228070176, 0.7543859649122807, 0.09824561403508772, 0.05964912280701754, 0.02456140350877193, 0.021052631578947368, 0.021052631578947368, 0.017543859649122806, 0.014035087719298246, 0.014035087719298246, 0.014035087719298246, 0.014035087719298246, 0.014035087719298246, 0.014035087719298246, 0.014035087719298246, 0.014035087719298246, 0.014035087719298246, 0.03859649122807018, 0.07017543859649122, 0.03859649122807018, 0.028070175438596492, 0.03859649122807018, 0.02456140350877193, 0.021052631578947368, 0.02456140350877193, 0.021052631578947368, 0.021052631578947368, 0.021052631578947368, 0.017543859649122806, 0.017543859649122806, 0.017543859649122806, 0.017543859649122806, 0.017543859649122806, 0.021052631578947368, 0.021052631578947368, 0.021052631578947368, 0.021052631578947368, 0.021052631578947368, 0.021052631578947368, 0.021052631578947368, 0.021052631578947368, 0.021052631578947368, 0.021052631578947368, 0.021052631578947368, 0.021052631578947368, 0.021052631578947368, 0.021052631578947368, 0.021052631578947368, 0.021052631578947368, 0.021052631578947368, 0.028070175438596492, 0.03508771929824561, 0.03508771929824561, 0.03859649122807018, 0.04912280701754386, 0.10175438596491228, 0.6421052631578947], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF1765.gap.json b/pfam_gap_rates/DUF1765.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b66b89bd1dc3003b9c27661c6bdfbf9b062decb3
--- /dev/null
+++ b/pfam_gap_rates/DUF1765.gap.json
@@ -0,0 +1 @@
+{"family": "DUF1765", "n_seqs": 190, "length": 165, "gap_rates": [0.7578947368421053, 0.42105263157894735, 0.26842105263157895, 0.1631578947368421, 0.11578947368421053, 0.1, 0.07368421052631578, 0.06315789473684211, 0.05789473684210526, 0.05789473684210526, 0.05789473684210526, 0.05789473684210526, 0.05263157894736842, 0.05263157894736842, 0.05263157894736842, 0.05263157894736842, 0.05263157894736842, 0.05263157894736842, 0.05263157894736842, 0.05263157894736842, 0.05263157894736842, 0.05263157894736842, 0.05263157894736842, 0.05263157894736842, 0.06315789473684211, 0.05263157894736842, 0.05263157894736842, 0.05263157894736842, 0.05263157894736842, 0.05263157894736842, 0.05263157894736842, 0.05263157894736842, 0.05263157894736842, 0.06315789473684211, 0.06842105263157895, 0.08421052631578947, 0.11578947368421053, 0.1368421052631579, 0.17894736842105263, 0.45263157894736844, 0.6526315789473685, 0.7631578947368421, 0.7894736842105263, 0.8157894736842105, 0.8210526315789474, 0.8315789473684211, 0.8526315789473684, 0.8736842105263158, 0.8894736842105263, 0.9052631578947369, 0.9157894736842105, 0.9263157894736842, 0.9368421052631579, 0.9263157894736842, 0.9105263157894737, 0.9052631578947369, 0.8789473684210526, 0.868421052631579, 0.8315789473684211, 0.8315789473684211, 0.8157894736842105, 0.7947368421052632, 0.7842105263157895, 0.7315789473684211, 0.5736842105263158, 0.15789473684210525, 0.09473684210526316, 0.07368421052631578, 0.05789473684210526, 0.03684210526315789, 0.03684210526315789, 0.031578947368421054, 0.031578947368421054, 0.02631578947368421, 0.02631578947368421, 0.02631578947368421, 0.02631578947368421, 0.02631578947368421, 0.02631578947368421, 0.021052631578947368, 0.021052631578947368, 0.021052631578947368, 0.021052631578947368, 0.021052631578947368, 0.8052631578947368, 0.021052631578947368, 0.021052631578947368, 0.021052631578947368, 0.021052631578947368, 0.021052631578947368, 0.021052631578947368, 0.021052631578947368, 0.021052631578947368, 0.021052631578947368, 0.015789473684210527, 0.015789473684210527, 0.015789473684210527, 0.015789473684210527, 0.015789473684210527, 0.021052631578947368, 0.021052631578947368, 0.015789473684210527, 0.015789473684210527, 0.015789473684210527, 0.015789473684210527, 0.015789473684210527, 0.015789473684210527, 0.4263157894736842, 0.5263157894736842, 0.5052631578947369, 0.9105263157894737, 0.9210526315789473, 0.9263157894736842, 0.9315789473684211, 0.9368421052631579, 0.9421052631578948, 0.9473684210526315, 0.9421052631578948, 0.9368421052631579, 0.9368421052631579, 0.9315789473684211, 0.9210526315789473, 0.9210526315789473, 0.9052631578947369, 0.031578947368421054, 0.02631578947368421, 0.015789473684210527, 0.015789473684210527, 0.010526315789473684, 0.010526315789473684, 0.010526315789473684, 0.010526315789473684, 0.005263157894736842, 0.005263157894736842, 0.005263157894736842, 0.005263157894736842, 0.02631578947368421, 0.031578947368421054, 0.3, 0.08421052631578947, 0.031578947368421054, 0.021052631578947368, 0.03684210526315789, 0.021052631578947368, 0.010526315789473684, 0.010526315789473684, 0.010526315789473684, 0.010526315789473684, 0.010526315789473684, 0.010526315789473684, 0.010526315789473684, 0.010526315789473684, 0.015789473684210527, 0.015789473684210527, 0.015789473684210527, 0.015789473684210527, 0.015789473684210527, 0.015789473684210527, 0.015789473684210527, 0.015789473684210527, 0.015789473684210527, 0.03684210526315789, 0.042105263157894736, 0.07894736842105263, 0.22105263157894736], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF1776.gap.json b/pfam_gap_rates/DUF1776.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..90be1140246d4b0b3850e0dbc00bb417d971b9e0
--- /dev/null
+++ b/pfam_gap_rates/DUF1776.gap.json
@@ -0,0 +1 @@
+{"family": "DUF1776", "n_seqs": 115, "length": 382, "gap_rates": [0.5217391304347826, 0.19130434782608696, 0.17391304347826086, 0.1565217391304348, 0.1565217391304348, 0.1565217391304348, 0.14782608695652175, 0.14782608695652175, 0.1565217391304348, 0.1565217391304348, 0.19130434782608696, 0.23478260869565218, 0.1565217391304348, 0.14782608695652175, 0.1391304347826087, 0.1391304347826087, 0.14782608695652175, 0.14782608695652175, 0.13043478260869565, 0.12173913043478261, 0.12173913043478261, 0.12173913043478261, 0.12173913043478261, 0.12173913043478261, 0.12173913043478261, 0.12173913043478261, 0.12173913043478261, 0.12173913043478261, 0.12173913043478261, 0.12173913043478261, 0.12173913043478261, 0.12173913043478261, 0.12173913043478261, 0.12173913043478261, 0.12173913043478261, 0.12173913043478261, 0.12173913043478261, 0.12173913043478261, 0.12173913043478261, 0.12173913043478261, 0.11304347826086956, 0.13043478260869565, 0.13043478260869565, 0.13043478260869565, 0.13043478260869565, 0.13043478260869565, 0.13043478260869565, 0.1391304347826087, 0.9130434782608695, 0.13043478260869565, 0.13043478260869565, 0.13043478260869565, 0.13043478260869565, 0.13043478260869565, 0.13043478260869565, 0.13043478260869565, 0.13043478260869565, 0.13043478260869565, 0.12173913043478261, 0.12173913043478261, 0.8, 0.8347826086956521, 0.9391304347826087, 0.8956521739130435, 0.8173913043478261, 0.8, 0.2, 0.2, 0.1826086956521739, 0.1565217391304348, 0.1565217391304348, 0.1565217391304348, 0.14782608695652175, 0.14782608695652175, 0.14782608695652175, 0.1391304347826087, 0.1391304347826087, 0.1391304347826087, 0.13043478260869565, 0.13043478260869565, 0.13043478260869565, 0.13043478260869565, 0.13043478260869565, 0.13043478260869565, 0.14782608695652175, 0.14782608695652175, 0.25217391304347825, 0.17391304347826086, 0.17391304347826086, 0.17391304347826086, 0.16521739130434782, 0.16521739130434782, 0.17391304347826086, 0.16521739130434782, 0.1565217391304348, 0.1565217391304348, 0.1565217391304348, 0.1565217391304348, 0.12173913043478261, 0.12173913043478261, 0.12173913043478261, 0.11304347826086956, 0.11304347826086956, 0.11304347826086956, 0.11304347826086956, 0.10434782608695652, 0.10434782608695652, 0.10434782608695652, 0.10434782608695652, 0.10434782608695652, 0.10434782608695652, 0.8695652173913043, 0.782608695652174, 0.12173913043478261, 0.10434782608695652, 0.10434782608695652, 0.13043478260869565, 0.12173913043478261, 0.11304347826086956, 0.10434782608695652, 0.10434782608695652, 0.10434782608695652, 0.10434782608695652, 0.9217391304347826, 0.10434782608695652, 0.9391304347826087, 0.10434782608695652, 0.10434782608695652, 0.10434782608695652, 0.10434782608695652, 0.16521739130434782, 0.09565217391304348, 0.09565217391304348, 0.11304347826086956, 0.09565217391304348, 0.09565217391304348, 0.09565217391304348, 0.09565217391304348, 0.09565217391304348, 0.09565217391304348, 0.8782608695652174, 0.09565217391304348, 0.09565217391304348, 0.09565217391304348, 0.09565217391304348, 0.09565217391304348, 0.09565217391304348, 0.09565217391304348, 0.09565217391304348, 0.09565217391304348, 0.09565217391304348, 0.09565217391304348, 0.09565217391304348, 0.3652173913043478, 0.3130434782608696, 0.4608695652173913, 0.5043478260869565, 0.5391304347826087, 0.7565217391304347, 0.782608695652174, 0.8782608695652174, 0.8956521739130435, 0.9217391304347826, 0.9304347826086956, 0.9391304347826087, 0.9478260869565217, 0.9478260869565217, 0.9478260869565217, 0.9478260869565217, 0.9391304347826087, 0.9304347826086956, 0.9217391304347826, 0.9130434782608695, 0.8869565217391304, 0.7913043478260869, 0.782608695652174, 0.5826086956521739, 0.5217391304347826, 0.4608695652173913, 0.4434782608695652, 0.11304347826086956, 0.11304347826086956, 0.12173913043478261, 0.12173913043478261, 0.12173913043478261, 0.12173913043478261, 0.1391304347826087, 0.1391304347826087, 0.1391304347826087, 0.1391304347826087, 0.14782608695652175, 0.1391304347826087, 0.1391304347826087, 0.1391304347826087, 0.14782608695652175, 0.1391304347826087, 0.1391304347826087, 0.1391304347826087, 0.1391304347826087, 0.1391304347826087, 0.1391304347826087, 0.1391304347826087, 0.1391304347826087, 0.1391304347826087, 0.1391304347826087, 0.1391304347826087, 0.1391304347826087, 0.1391304347826087, 0.1391304347826087, 0.1391304347826087, 0.1391304347826087, 0.1391304347826087, 0.1391304347826087, 0.1391304347826087, 0.1391304347826087, 0.1391304347826087, 0.1391304347826087, 0.1391304347826087, 0.1391304347826087, 0.1391304347826087, 0.1391304347826087, 0.1391304347826087, 0.1391304347826087, 0.7130434782608696, 0.7913043478260869, 0.8173913043478261, 0.8347826086956521, 0.8608695652173913, 0.8434782608695652, 0.8347826086956521, 0.808695652173913, 0.7391304347826086, 0.7043478260869566, 0.2, 0.17391304347826086, 0.1565217391304348, 0.1391304347826087, 0.1391304347826087, 0.14782608695652175, 0.14782608695652175, 0.1391304347826087, 0.1391304347826087, 0.1391304347826087, 0.1391304347826087, 0.1391304347826087, 0.1391304347826087, 0.1391304347826087, 0.1391304347826087, 0.1565217391304348, 0.2, 0.4782608695652174, 0.7217391304347827, 0.7652173913043478, 0.8608695652173913, 0.9130434782608695, 0.9304347826086956, 0.9478260869565217, 0.9478260869565217, 0.9391304347826087, 0.9304347826086956, 0.9043478260869565, 0.782608695652174, 0.7391304347826086, 0.6086956521739131, 0.25217391304347825, 0.25217391304347825, 0.24347826086956523, 0.19130434782608696, 0.17391304347826086, 0.17391304347826086, 0.19130434782608696, 0.2, 0.2, 0.20869565217391303, 0.2, 0.2, 0.2, 0.22608695652173913, 0.22608695652173913, 0.8782608695652174, 0.8956521739130435, 0.8173913043478261, 0.41739130434782606, 0.3652173913043478, 0.30434782608695654, 0.26956521739130435, 0.2608695652173913, 0.2608695652173913, 0.22608695652173913, 0.21739130434782608, 0.21739130434782608, 0.21739130434782608, 0.21739130434782608, 0.21739130434782608, 0.21739130434782608, 0.23478260869565218, 0.23478260869565218, 0.23478260869565218, 0.23478260869565218, 0.23478260869565218, 0.22608695652173913, 0.22608695652173913, 0.21739130434782608, 0.2608695652173913, 0.34782608695652173, 0.3130434782608696, 0.3130434782608696, 0.3130434782608696, 0.2956521739130435, 0.28695652173913044, 0.2782608695652174, 0.2608695652173913, 0.591304347826087, 0.9304347826086956, 0.8173913043478261, 0.43478260869565216, 0.20869565217391303, 0.20869565217391303, 0.20869565217391303, 0.2, 0.20869565217391303, 0.20869565217391303, 0.20869565217391303, 0.20869565217391303, 0.20869565217391303, 0.20869565217391303, 0.20869565217391303, 0.20869565217391303, 0.23478260869565218, 0.23478260869565218, 0.23478260869565218, 0.23478260869565218, 0.22608695652173913, 0.2956521739130435, 0.23478260869565218, 0.25217391304347825, 0.7565217391304347, 0.7739130434782608, 0.7913043478260869, 0.808695652173913, 0.8956521739130435, 0.8956521739130435, 0.8956521739130435, 0.9304347826086956, 0.9391304347826087, 0.9478260869565217, 0.9304347826086956, 0.9217391304347826, 0.8956521739130435, 0.8956521739130435, 0.808695652173913, 0.8, 0.7913043478260869, 0.7652173913043478, 0.7304347826086957, 0.22608695652173913, 0.25217391304347825, 0.25217391304347825, 0.25217391304347825, 0.25217391304347825, 0.25217391304347825, 0.25217391304347825, 0.25217391304347825, 0.25217391304347825, 0.25217391304347825, 0.25217391304347825, 0.25217391304347825, 0.25217391304347825, 0.25217391304347825, 0.2608695652173913, 0.2956521739130435, 0.2956521739130435, 0.2782608695652174, 0.2782608695652174, 0.2956521739130435, 0.28695652173913044, 0.28695652173913044, 0.2956521739130435, 0.3391304347826087, 0.34782608695652173, 0.3826086956521739, 0.7565217391304347], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF1779.gap.json b/pfam_gap_rates/DUF1779.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..46638911e034f3abdd1ab97dfeb1cf01137eda59
--- /dev/null
+++ b/pfam_gap_rates/DUF1779.gap.json
@@ -0,0 +1 @@
+{"family": "DUF1779", "n_seqs": 142, "length": 213, "gap_rates": [0.6690140845070423, 0.5774647887323944, 0.5563380281690141, 0.5211267605633803, 0.5070422535211268, 0.49295774647887325, 0.47183098591549294, 0.44366197183098594, 0.4295774647887324, 0.4084507042253521, 0.39436619718309857, 0.43661971830985913, 0.4014084507042254, 0.36619718309859156, 0.33098591549295775, 0.31690140845070425, 0.3591549295774648, 0.31690140845070425, 0.2887323943661972, 0.2746478873239437, 0.2746478873239437, 0.2605633802816901, 0.2605633802816901, 0.2605633802816901, 0.2605633802816901, 0.2605633802816901, 0.2605633802816901, 0.2676056338028169, 0.2746478873239437, 0.2676056338028169, 0.2746478873239437, 0.7676056338028169, 0.8591549295774648, 0.795774647887324, 0.7394366197183099, 0.6056338028169014, 0.4225352112676056, 0.3732394366197183, 0.29577464788732394, 0.29577464788732394, 0.24647887323943662, 0.24647887323943662, 0.23943661971830985, 0.24647887323943662, 0.2605633802816901, 0.24647887323943662, 0.24647887323943662, 0.24647887323943662, 0.21830985915492956, 0.21830985915492956, 0.2112676056338028, 0.21830985915492956, 0.38028169014084506, 0.34507042253521125, 0.23943661971830985, 0.28169014084507044, 0.21830985915492956, 0.21830985915492956, 0.19718309859154928, 0.19014084507042253, 0.18309859154929578, 0.176056338028169, 0.15492957746478872, 0.14084507042253522, 0.14084507042253522, 0.14084507042253522, 0.16901408450704225, 0.1619718309859155, 0.15492957746478872, 0.8802816901408451, 0.9436619718309859, 0.9295774647887324, 0.7605633802816901, 0.38028169014084506, 0.3380281690140845, 0.2535211267605634, 0.2112676056338028, 0.15492957746478872, 0.11971830985915492, 0.13380281690140844, 0.36619718309859156, 0.323943661971831, 0.1056338028169014, 0.1056338028169014, 0.09859154929577464, 0.1056338028169014, 0.09859154929577464, 0.09859154929577464, 0.3591549295774648, 0.36619718309859156, 0.24647887323943662, 0.9084507042253521, 0.176056338028169, 0.4507042253521127, 0.2323943661971831, 0.09859154929577464, 0.08450704225352113, 0.07746478873239436, 0.11971830985915492, 0.15492957746478872, 0.13380281690140844, 0.1267605633802817, 0.11267605633802817, 0.08450704225352113, 0.07746478873239436, 0.07042253521126761, 0.04929577464788732, 0.04225352112676056, 0.04929577464788732, 0.04929577464788732, 0.04929577464788732, 0.04225352112676056, 0.06338028169014084, 0.04929577464788732, 0.04929577464788732, 0.6408450704225352, 0.11267605633802817, 0.07042253521126761, 0.056338028169014086, 0.056338028169014086, 0.04929577464788732, 0.04929577464788732, 0.04225352112676056, 0.035211267605633804, 0.04225352112676056, 0.04225352112676056, 0.04225352112676056, 0.035211267605633804, 0.028169014084507043, 0.028169014084507043, 0.028169014084507043, 0.028169014084507043, 0.07042253521126761, 0.056338028169014086, 0.035211267605633804, 0.04929577464788732, 0.04225352112676056, 0.3732394366197183, 0.07746478873239436, 0.056338028169014086, 0.028169014084507043, 0.02112676056338028, 0.014084507042253521, 0.014084507042253521, 0.02112676056338028, 0.035211267605633804, 0.035211267605633804, 0.028169014084507043, 0.007042253521126761, 0.007042253521126761, 0.007042253521126761, 0.007042253521126761, 0.007042253521126761, 0.007042253521126761, 0.007042253521126761, 0.014084507042253521, 0.007042253521126761, 0.007042253521126761, 0.007042253521126761, 0.007042253521126761, 0.007042253521126761, 0.007042253521126761, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.007042253521126761, 0.0, 0.0, 0.2887323943661972, 0.035211267605633804, 0.6619718309859155, 0.02112676056338028, 0.02112676056338028, 0.007042253521126761, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.16901408450704225, 0.08450704225352113, 0.007042253521126761, 0.007042253521126761, 0.007042253521126761, 0.007042253521126761, 0.0, 0.0, 0.0, 0.014084507042253521, 0.0, 0.0, 0.0, 0.0, 0.0, 0.014084507042253521, 0.014084507042253521, 0.035211267605633804, 0.04225352112676056, 0.04929577464788732, 0.09154929577464789], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF1788.gap.json b/pfam_gap_rates/DUF1788.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..da396a103a39d5b97139a87b0fba5545ee9894e2
--- /dev/null
+++ b/pfam_gap_rates/DUF1788.gap.json
@@ -0,0 +1 @@
+{"family": "DUF1788", "n_seqs": 146, "length": 144, "gap_rates": [0.3356164383561644, 0.2191780821917808, 0.19863013698630136, 0.19863013698630136, 0.19863013698630136, 0.19863013698630136, 0.19863013698630136, 0.19863013698630136, 0.19863013698630136, 0.19863013698630136, 0.1917808219178082, 0.1917808219178082, 0.1917808219178082, 0.1780821917808219, 0.1780821917808219, 0.1780821917808219, 0.9246575342465754, 0.9178082191780822, 0.18493150684931506, 0.1780821917808219, 0.17123287671232876, 0.17123287671232876, 0.1643835616438356, 0.1643835616438356, 0.1643835616438356, 0.17123287671232876, 0.1643835616438356, 0.1643835616438356, 0.15753424657534246, 0.15753424657534246, 0.9383561643835616, 0.9315068493150684, 0.1506849315068493, 0.136986301369863, 0.13013698630136986, 0.1232876712328767, 0.1232876712328767, 0.11643835616438356, 0.1095890410958904, 0.10273972602739725, 0.10273972602739725, 0.10273972602739725, 0.10273972602739725, 0.0958904109589041, 0.08904109589041095, 0.08904109589041095, 0.07534246575342465, 0.6301369863013698, 0.726027397260274, 0.9315068493150684, 0.8972602739726028, 0.678082191780822, 0.4246575342465753, 0.06164383561643835, 0.04794520547945205, 0.04794520547945205, 0.0410958904109589, 0.0410958904109589, 0.0410958904109589, 0.03424657534246575, 0.0410958904109589, 0.03424657534246575, 0.0273972602739726, 0.0273972602739726, 0.0273972602739726, 0.0410958904109589, 0.0547945205479452, 0.7876712328767124, 0.3493150684931507, 0.273972602739726, 0.00684931506849315, 0.815068493150685, 0.8835616438356164, 0.9315068493150684, 0.9178082191780822, 0.815068493150685, 0.8082191780821918, 0.00684931506849315, 0.00684931506849315, 0.00684931506849315, 0.00684931506849315, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.00684931506849315, 0.00684931506849315, 0.2465753424657534, 0.0136986301369863, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.8287671232876712, 0.8424657534246576, 0.863013698630137, 0.8424657534246576, 0.6917808219178082, 0.0, 0.00684931506849315, 0.0, 0.0, 0.0, 0.0, 0.0, 0.00684931506849315, 0.0547945205479452, 0.0958904109589041, 0.02054794520547945, 0.0273972602739726, 0.04794520547945205, 0.04794520547945205, 0.11643835616438356, 0.11643835616438356, 0.15753424657534246, 0.2191780821917808, 0.2328767123287671, 0.2328767123287671, 0.3835616438356164], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF1802.gap.json b/pfam_gap_rates/DUF1802.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..1ed24418dddbb987e005de24636a15f91e89ce50
--- /dev/null
+++ b/pfam_gap_rates/DUF1802.gap.json
@@ -0,0 +1 @@
+{"family": "DUF1802", "n_seqs": 107, "length": 183, "gap_rates": [0.16822429906542055, 0.056074766355140186, 0.056074766355140186, 0.056074766355140186, 0.056074766355140186, 0.04672897196261682, 0.04672897196261682, 0.04672897196261682, 0.04672897196261682, 0.04672897196261682, 0.04672897196261682, 0.04672897196261682, 0.04672897196261682, 0.04672897196261682, 0.04672897196261682, 0.04672897196261682, 0.04672897196261682, 0.04672897196261682, 0.028037383177570093, 0.028037383177570093, 0.028037383177570093, 0.028037383177570093, 0.028037383177570093, 0.06542056074766354, 0.06542056074766354, 0.08411214953271028, 0.08411214953271028, 0.08411214953271028, 0.08411214953271028, 0.08411214953271028, 0.3644859813084112, 0.3644859813084112, 0.17757009345794392, 0.17757009345794392, 0.16822429906542055, 0.16822429906542055, 0.16822429906542055, 0.1588785046728972, 0.06542056074766354, 0.04672897196261682, 0.04672897196261682, 0.04672897196261682, 0.04672897196261682, 0.04672897196261682, 0.04672897196261682, 0.04672897196261682, 0.056074766355140186, 0.04672897196261682, 0.04672897196261682, 0.04672897196261682, 0.04672897196261682, 0.9252336448598131, 0.056074766355140186, 0.056074766355140186, 0.056074766355140186, 0.056074766355140186, 0.056074766355140186, 0.056074766355140186, 0.056074766355140186, 0.04672897196261682, 0.04672897196261682, 0.04672897196261682, 0.04672897196261682, 0.056074766355140186, 0.04672897196261682, 0.04672897196261682, 0.11214953271028037, 0.102803738317757, 0.102803738317757, 0.056074766355140186, 0.056074766355140186, 0.037383177570093455, 0.028037383177570093, 0.6542056074766355, 0.8598130841121495, 0.8411214953271028, 0.5794392523364486, 0.06542056074766354, 0.04672897196261682, 0.028037383177570093, 0.028037383177570093, 0.028037383177570093, 0.028037383177570093, 0.028037383177570093, 0.028037383177570093, 0.028037383177570093, 0.028037383177570093, 0.028037383177570093, 0.028037383177570093, 0.028037383177570093, 0.028037383177570093, 0.028037383177570093, 0.028037383177570093, 0.028037383177570093, 0.028037383177570093, 0.07476635514018691, 0.037383177570093455, 0.028037383177570093, 0.028037383177570093, 0.028037383177570093, 0.028037383177570093, 0.028037383177570093, 0.028037383177570093, 0.028037383177570093, 0.028037383177570093, 0.028037383177570093, 0.028037383177570093, 0.028037383177570093, 0.028037383177570093, 0.028037383177570093, 0.028037383177570093, 0.028037383177570093, 0.028037383177570093, 0.028037383177570093, 0.8785046728971962, 0.056074766355140186, 0.04672897196261682, 0.04672897196261682, 0.04672897196261682, 0.19626168224299065, 0.14018691588785046, 0.1308411214953271, 0.018691588785046728, 0.028037383177570093, 0.028037383177570093, 0.028037383177570093, 0.028037383177570093, 0.028037383177570093, 0.028037383177570093, 0.028037383177570093, 0.028037383177570093, 0.028037383177570093, 0.028037383177570093, 0.028037383177570093, 0.028037383177570093, 0.037383177570093455, 0.04672897196261682, 0.037383177570093455, 0.04672897196261682, 0.037383177570093455, 0.037383177570093455, 0.037383177570093455, 0.8504672897196262, 0.037383177570093455, 0.037383177570093455, 0.04672897196261682, 0.056074766355140186, 0.11214953271028037, 0.12149532710280374, 0.102803738317757, 0.09345794392523364, 0.056074766355140186, 0.037383177570093455, 0.037383177570093455, 0.037383177570093455, 0.037383177570093455, 0.037383177570093455, 0.037383177570093455, 0.04672897196261682, 0.04672897196261682, 0.04672897196261682, 0.8878504672897196, 0.9439252336448598, 0.2897196261682243, 0.17757009345794392, 0.102803738317757, 0.09345794392523364, 0.09345794392523364, 0.09345794392523364, 0.07476635514018691, 0.06542056074766354, 0.07476635514018691, 0.07476635514018691, 0.07476635514018691, 0.08411214953271028, 0.09345794392523364, 0.09345794392523364, 0.09345794392523364, 0.09345794392523364, 0.09345794392523364, 0.1308411214953271, 0.21495327102803738, 0.4485981308411215], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF1805.gap.json b/pfam_gap_rates/DUF1805.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..72812fc0eaa77952014863ff6fd23ea847df89e4
--- /dev/null
+++ b/pfam_gap_rates/DUF1805.gap.json
@@ -0,0 +1 @@
+{"family": "DUF1805", "n_seqs": 122, "length": 65, "gap_rates": [0.01639344262295082, 0.01639344262295082, 0.01639344262295082, 0.01639344262295082, 0.01639344262295082, 0.01639344262295082, 0.01639344262295082, 0.01639344262295082, 0.01639344262295082, 0.01639344262295082, 0.01639344262295082, 0.01639344262295082, 0.6721311475409836, 0.6721311475409836, 0.01639344262295082, 0.01639344262295082, 0.01639344262295082, 0.01639344262295082, 0.01639344262295082, 0.01639344262295082, 0.21311475409836064, 0.21311475409836064, 0.21311475409836064, 0.21311475409836064, 0.28688524590163933, 0.22131147540983606, 0.02459016393442623, 0.01639344262295082, 0.01639344262295082, 0.00819672131147541, 0.00819672131147541, 0.00819672131147541, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.00819672131147541, 0.00819672131147541, 0.00819672131147541, 0.00819672131147541, 0.00819672131147541, 0.00819672131147541, 0.00819672131147541, 0.00819672131147541, 0.00819672131147541, 0.00819672131147541, 0.00819672131147541, 0.02459016393442623, 0.09836065573770492, 0.19672131147540983], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF1820.gap.json b/pfam_gap_rates/DUF1820.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d4822c0e013bb1df22777cf1bba67b8f2cef80d4
--- /dev/null
+++ b/pfam_gap_rates/DUF1820.gap.json
@@ -0,0 +1 @@
+{"family": "DUF1820", "n_seqs": 104, "length": 98, "gap_rates": [0.04807692307692308, 0.028846153846153848, 0.028846153846153848, 0.028846153846153848, 0.028846153846153848, 0.028846153846153848, 0.028846153846153848, 0.019230769230769232, 0.009615384615384616, 0.009615384615384616, 0.009615384615384616, 0.009615384615384616, 0.009615384615384616, 0.009615384615384616, 0.009615384615384616, 0.009615384615384616, 0.009615384615384616, 0.009615384615384616, 0.009615384615384616, 0.009615384615384616, 0.009615384615384616, 0.009615384615384616, 0.009615384615384616, 0.009615384615384616, 0.009615384615384616, 0.009615384615384616, 0.038461538461538464, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.019230769230769232, 0.0, 0.019230769230769232, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.009615384615384616, 0.009615384615384616, 0.009615384615384616, 0.009615384615384616, 0.009615384615384616, 0.009615384615384616, 0.009615384615384616, 0.009615384615384616, 0.009615384615384616, 0.009615384615384616, 0.009615384615384616, 0.009615384615384616, 0.009615384615384616, 0.009615384615384616, 0.009615384615384616, 0.009615384615384616, 0.009615384615384616, 0.019230769230769232, 0.038461538461538464, 0.04807692307692308, 0.04807692307692308, 0.0673076923076923, 0.0673076923076923, 0.08653846153846154, 0.4423076923076923, 0.9134615384615384, 0.7307692307692307, 0.3557692307692308, 0.125, 0.11538461538461539, 0.125, 0.125, 0.125, 0.125, 0.125, 0.16346153846153846, 0.7596153846153846], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF1857.gap.json b/pfam_gap_rates/DUF1857.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..48f31f29af4257dca8c0ce1b0131b204a931042a
--- /dev/null
+++ b/pfam_gap_rates/DUF1857.gap.json
@@ -0,0 +1 @@
+{"family": "DUF1857", "n_seqs": 126, "length": 179, "gap_rates": [0.5634920634920635, 0.3968253968253968, 0.3253968253968254, 0.30952380952380953, 0.30158730158730157, 0.2777777777777778, 0.2619047619047619, 0.2777777777777778, 0.23809523809523808, 0.48412698412698413, 0.4523809523809524, 0.23015873015873015, 0.1349206349206349, 0.1111111111111111, 0.10317460317460317, 0.09523809523809523, 0.09523809523809523, 0.0873015873015873, 0.07936507936507936, 0.07142857142857142, 0.06349206349206349, 0.06349206349206349, 0.06349206349206349, 0.05555555555555555, 0.05555555555555555, 0.05555555555555555, 0.05555555555555555, 0.05555555555555555, 0.05555555555555555, 0.05555555555555555, 0.05555555555555555, 0.05555555555555555, 0.05555555555555555, 0.047619047619047616, 0.05555555555555555, 0.05555555555555555, 0.07142857142857142, 0.9047619047619048, 0.06349206349206349, 0.05555555555555555, 0.047619047619047616, 0.05555555555555555, 0.047619047619047616, 0.047619047619047616, 0.047619047619047616, 0.047619047619047616, 0.047619047619047616, 0.047619047619047616, 0.047619047619047616, 0.047619047619047616, 0.047619047619047616, 0.7619047619047619, 0.8095238095238095, 0.9126984126984127, 0.9444444444444444, 0.8571428571428571, 0.8095238095238095, 0.7380952380952381, 0.047619047619047616, 0.047619047619047616, 0.047619047619047616, 0.047619047619047616, 0.047619047619047616, 0.047619047619047616, 0.047619047619047616, 0.047619047619047616, 0.047619047619047616, 0.9285714285714286, 0.873015873015873, 0.07936507936507936, 0.3492063492063492, 0.8888888888888888, 0.9444444444444444, 0.9365079365079365, 0.7222222222222222, 0.2857142857142857, 0.7222222222222222, 0.07936507936507936, 0.7698412698412699, 0.9444444444444444, 0.8412698412698413, 0.6984126984126984, 0.05555555555555555, 0.05555555555555555, 0.05555555555555555, 0.047619047619047616, 0.047619047619047616, 0.047619047619047616, 0.05555555555555555, 0.05555555555555555, 0.05555555555555555, 0.047619047619047616, 0.05555555555555555, 0.05555555555555555, 0.05555555555555555, 0.06349206349206349, 0.05555555555555555, 0.05555555555555555, 0.03968253968253968, 0.031746031746031744, 0.031746031746031744, 0.8253968253968254, 0.8253968253968254, 0.8253968253968254, 0.8253968253968254, 0.7619047619047619, 0.023809523809523808, 0.7222222222222222, 0.8174603174603174, 0.8253968253968254, 0.7380952380952381, 0.6587301587301587, 0.023809523809523808, 0.015873015873015872, 0.015873015873015872, 0.015873015873015872, 0.015873015873015872, 0.015873015873015872, 0.015873015873015872, 0.015873015873015872, 0.031746031746031744, 0.03968253968253968, 0.03968253968253968, 0.047619047619047616, 0.023809523809523808, 0.8095238095238095, 0.8253968253968254, 0.753968253968254, 0.03968253968253968, 0.031746031746031744, 0.031746031746031744, 0.023809523809523808, 0.023809523809523808, 0.023809523809523808, 0.023809523809523808, 0.023809523809523808, 0.031746031746031744, 0.031746031746031744, 0.031746031746031744, 0.047619047619047616, 0.05555555555555555, 0.06349206349206349, 0.11904761904761904, 0.07936507936507936, 0.10317460317460317, 0.12698412698412698, 0.10317460317460317, 0.14285714285714285, 0.09523809523809523, 0.07142857142857142, 0.05555555555555555, 0.06349206349206349, 0.05555555555555555, 0.19047619047619047, 0.05555555555555555, 0.047619047619047616, 0.047619047619047616, 0.05555555555555555, 0.06349206349206349, 0.07142857142857142, 0.09523809523809523, 0.10317460317460317, 0.10317460317460317, 0.10317460317460317, 0.1111111111111111, 0.1111111111111111, 0.1111111111111111, 0.11904761904761904, 0.12698412698412698, 0.12698412698412698, 0.12698412698412698, 0.1349206349206349, 0.15873015873015872, 0.16666666666666666, 0.18253968253968253, 0.18253968253968253, 0.19047619047619047, 0.29365079365079366, 0.35714285714285715], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF1858.gap.json b/pfam_gap_rates/DUF1858.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c0f0d121f8ad18c9a5863b4765d5f9a8b1005e70
--- /dev/null
+++ b/pfam_gap_rates/DUF1858.gap.json
@@ -0,0 +1 @@
+{"family": "DUF1858", "n_seqs": 719, "length": 61, "gap_rates": [0.3769123783031989, 0.10987482614742698, 0.05146036161335188, 0.022253129346314324, 0.009735744089012517, 0.006954102920723227, 0.005563282336578581, 0.005563282336578581, 0.005563282336578581, 0.004172461752433936, 0.0027816411682892906, 0.0013908205841446453, 0.0027816411682892906, 0.004172461752433936, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.8845618915159944, 0.8636995827538247, 0.0, 0.0, 0.0, 0.0013908205841446453, 0.0013908205841446453, 0.0013908205841446453, 0.008344923504867872, 0.008344923504867872, 0.043115438108484005, 0.7287899860917941, 0.7190542420027817, 0.7190542420027817, 0.717663421418637, 0.7162726008344924, 0.013908205841446454, 0.011126564673157162, 0.015299026425591099, 0.012517385257301807, 0.012517385257301807, 0.012517385257301807, 0.012517385257301807, 0.012517385257301807, 0.012517385257301807, 0.013908205841446454, 0.013908205841446454, 0.015299026425591099, 0.015299026425591099, 0.016689847009735744, 0.02086230876216968, 0.03337969401947149, 0.05006954102920723, 0.06815020862308763, 0.1043115438108484, 0.1599443671766342, 0.4325452016689847], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF19.gap.json b/pfam_gap_rates/DUF19.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..505b1a0fa037896f2d541629bbe0f52e4fd7417f
--- /dev/null
+++ b/pfam_gap_rates/DUF19.gap.json
@@ -0,0 +1 @@
+{"family": "DUF19", "n_seqs": 153, "length": 184, "gap_rates": [0.45098039215686275, 0.45098039215686275, 0.9215686274509803, 0.46405228758169936, 0.43137254901960786, 0.40522875816993464, 0.37254901960784315, 0.35294117647058826, 0.33986928104575165, 0.3202614379084967, 0.30718954248366015, 0.29411764705882354, 0.29411764705882354, 0.29411764705882354, 0.29411764705882354, 0.6078431372549019, 0.6013071895424836, 0.5882352941176471, 0.3137254901960784, 0.29411764705882354, 0.29411764705882354, 0.27450980392156865, 0.3202614379084967, 0.3202614379084967, 0.30718954248366015, 0.2875816993464052, 0.27450980392156865, 0.27450980392156865, 0.2875816993464052, 0.29411764705882354, 0.8823529411764706, 0.9281045751633987, 0.869281045751634, 0.37254901960784315, 0.30718954248366015, 0.26143790849673204, 0.23529411764705882, 0.23529411764705882, 0.3464052287581699, 0.20915032679738563, 0.9150326797385621, 0.1830065359477124, 0.1830065359477124, 0.17647058823529413, 0.17647058823529413, 0.17647058823529413, 0.17647058823529413, 0.16993464052287582, 0.16339869281045752, 0.1503267973856209, 0.9019607843137255, 0.9019607843137255, 0.9019607843137255, 0.1503267973856209, 0.1503267973856209, 0.1503267973856209, 0.1568627450980392, 0.1568627450980392, 0.1568627450980392, 0.13725490196078433, 0.13725490196078433, 0.1503267973856209, 0.1830065359477124, 0.934640522875817, 0.12418300653594772, 0.12418300653594772, 0.17647058823529413, 0.9019607843137255, 0.8104575163398693, 0.6209150326797386, 0.43790849673202614, 0.40522875816993464, 0.1503267973856209, 0.12418300653594772, 0.11764705882352941, 0.1111111111111111, 0.10457516339869281, 0.1111111111111111, 0.10457516339869281, 0.1111111111111111, 0.13071895424836602, 0.10457516339869281, 0.0915032679738562, 0.0915032679738562, 0.0915032679738562, 0.08496732026143791, 0.0784313725490196, 0.058823529411764705, 0.058823529411764705, 0.08496732026143791, 0.058823529411764705, 0.0392156862745098, 0.0392156862745098, 0.032679738562091505, 0.013071895424836602, 0.013071895424836602, 0.013071895424836602, 0.013071895424836602, 0.013071895424836602, 0.013071895424836602, 0.013071895424836602, 0.013071895424836602, 0.24183006535947713, 0.0784313725490196, 0.33986928104575165, 0.0784313725490196, 0.0457516339869281, 0.738562091503268, 0.8300653594771242, 0.6993464052287581, 0.032679738562091505, 0.0196078431372549, 0.0196078431372549, 0.032679738562091505, 0.0392156862745098, 0.026143790849673203, 0.0196078431372549, 0.026143790849673203, 0.0196078431372549, 0.026143790849673203, 0.026143790849673203, 0.026143790849673203, 0.5163398692810458, 0.6405228758169934, 0.673202614379085, 0.6862745098039216, 0.738562091503268, 0.8627450980392157, 0.7973856209150327, 0.6862745098039216, 0.6797385620915033, 0.6535947712418301, 0.5751633986928104, 0.5098039215686274, 0.3660130718954248, 0.20261437908496732, 0.12418300653594772, 0.0392156862745098, 0.026143790849673203, 0.013071895424836602, 0.013071895424836602, 0.013071895424836602, 0.013071895424836602, 0.013071895424836602, 0.013071895424836602, 0.013071895424836602, 0.013071895424836602, 0.013071895424836602, 0.013071895424836602, 0.013071895424836602, 0.013071895424836602, 0.013071895424836602, 0.013071895424836602, 0.013071895424836602, 0.013071895424836602, 0.013071895424836602, 0.013071895424836602, 0.013071895424836602, 0.013071895424836602, 0.013071895424836602, 0.013071895424836602, 0.0196078431372549, 0.0392156862745098, 0.026143790849673203, 0.032679738562091505, 0.032679738562091505, 0.0392156862745098, 0.058823529411764705, 0.0784313725490196, 0.08496732026143791, 0.10457516339869281, 0.1437908496732026, 0.1830065359477124, 0.20261437908496732, 0.2549019607843137, 0.3006535947712418, 0.3333333333333333, 0.3790849673202614, 0.5228758169934641, 0.9411764705882353, 0.7189542483660131, 0.48366013071895425, 0.49019607843137253, 0.7843137254901961], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF1908.gap.json b/pfam_gap_rates/DUF1908.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a8da8615327896f0ed8adadedf5343ff5c7b0115
--- /dev/null
+++ b/pfam_gap_rates/DUF1908.gap.json
@@ -0,0 +1 @@
+{"family": "DUF1908", "n_seqs": 162, "length": 341, "gap_rates": [0.5, 0.5, 0.49382716049382713, 0.48148148148148145, 0.47530864197530864, 0.47530864197530864, 0.47530864197530864, 0.4876543209876543, 0.47530864197530864, 0.48148148148148145, 0.48148148148148145, 0.5370370370370371, 0.5802469135802469, 0.6358024691358025, 0.4876543209876543, 0.48148148148148145, 0.48148148148148145, 0.48148148148148145, 0.6172839506172839, 0.6111111111111112, 0.46296296296296297, 0.4506172839506173, 0.42592592592592593, 0.43209876543209874, 0.7530864197530864, 0.7283950617283951, 0.7098765432098766, 0.7037037037037037, 0.691358024691358, 0.6975308641975309, 0.654320987654321, 0.8950617283950617, 0.30864197530864196, 0.30864197530864196, 0.30246913580246915, 0.30246913580246915, 0.30246913580246915, 0.2962962962962963, 0.2962962962962963, 0.2962962962962963, 0.2962962962962963, 0.29012345679012347, 0.3148148148148148, 0.29012345679012347, 0.9135802469135802, 0.29012345679012347, 0.29012345679012347, 0.29012345679012347, 0.29012345679012347, 0.29012345679012347, 0.5246913580246914, 0.30864197530864196, 0.29012345679012347, 0.654320987654321, 0.29012345679012347, 0.29012345679012347, 0.29012345679012347, 0.29012345679012347, 0.30246913580246915, 0.3148148148148148, 0.2962962962962963, 0.30864197530864196, 0.30864197530864196, 0.30246913580246915, 0.30246913580246915, 0.29012345679012347, 0.29012345679012347, 0.29012345679012347, 0.30246913580246915, 0.3148148148148148, 0.30246913580246915, 0.30246913580246915, 0.36419753086419754, 0.35802469135802467, 0.35185185185185186, 0.35185185185185186, 0.35185185185185186, 0.2962962962962963, 0.2962962962962963, 0.30864197530864196, 0.30864197530864196, 0.32098765432098764, 0.32098765432098764, 0.3148148148148148, 0.32098765432098764, 0.3148148148148148, 0.30246913580246915, 0.9259259259259259, 0.9259259259259259, 0.9259259259259259, 0.9259259259259259, 0.9320987654320988, 0.9320987654320988, 0.9320987654320988, 0.9320987654320988, 0.9382716049382716, 0.9444444444444444, 0.9444444444444444, 0.9444444444444444, 0.9382716049382716, 0.9320987654320988, 0.9320987654320988, 0.9320987654320988, 0.9320987654320988, 0.9259259259259259, 0.9259259259259259, 0.9259259259259259, 0.9259259259259259, 0.9259259259259259, 0.48148148148148145, 0.35802469135802467, 0.35802469135802467, 0.35802469135802467, 0.345679012345679, 0.3333333333333333, 0.3333333333333333, 0.3395061728395062, 0.3395061728395062, 0.4012345679012346, 0.7530864197530864, 0.8765432098765432, 0.9012345679012346, 0.9074074074074074, 0.9320987654320988, 0.9320987654320988, 0.9382716049382716, 0.9444444444444444, 0.9444444444444444, 0.9444444444444444, 0.9444444444444444, 0.9444444444444444, 0.9444444444444444, 0.9382716049382716, 0.9320987654320988, 0.9135802469135802, 0.9074074074074074, 0.8827160493827161, 0.8703703703703703, 0.6481481481481481, 0.35185185185185186, 0.3333333333333333, 0.3148148148148148, 0.3148148148148148, 0.3148148148148148, 0.345679012345679, 0.2777777777777778, 0.2716049382716049, 0.2716049382716049, 0.2716049382716049, 0.2716049382716049, 0.2716049382716049, 0.2716049382716049, 0.2716049382716049, 0.7654320987654321, 0.2962962962962963, 0.2839506172839506, 0.2777777777777778, 0.2777777777777778, 0.2777777777777778, 0.2716049382716049, 0.2716049382716049, 0.4691358024691358, 0.2716049382716049, 0.2777777777777778, 0.2716049382716049, 0.2716049382716049, 0.2654320987654321, 0.2654320987654321, 0.2654320987654321, 0.2654320987654321, 0.2654320987654321, 0.25925925925925924, 0.25925925925925924, 0.25925925925925924, 0.25925925925925924, 0.25925925925925924, 0.25925925925925924, 0.25308641975308643, 0.25308641975308643, 0.24691358024691357, 0.24074074074074073, 0.24074074074074073, 0.24074074074074073, 0.24074074074074073, 0.2222222222222222, 0.2222222222222222, 0.2222222222222222, 0.21604938271604937, 0.21604938271604937, 0.21604938271604937, 0.20987654320987653, 0.20987654320987653, 0.20987654320987653, 0.20987654320987653, 0.2037037037037037, 0.2037037037037037, 0.2037037037037037, 0.2037037037037037, 0.19753086419753085, 0.20987654320987653, 0.24074074074074073, 0.2777777777777778, 0.25308641975308643, 0.2839506172839506, 0.7839506172839507, 0.9012345679012346, 0.9074074074074074, 0.9074074074074074, 0.9012345679012346, 0.8888888888888888, 0.7160493827160493, 0.24074074074074073, 0.21604938271604937, 0.21604938271604937, 0.21604938271604937, 0.21604938271604937, 0.21604938271604937, 0.21604938271604937, 0.20987654320987653, 0.20987654320987653, 0.20987654320987653, 0.19753086419753085, 0.2037037037037037, 0.19753086419753085, 0.19753086419753085, 0.19753086419753085, 0.19753086419753085, 0.19753086419753085, 0.19753086419753085, 0.19753086419753085, 0.19753086419753085, 0.19753086419753085, 0.19753086419753085, 0.19753086419753085, 0.19753086419753085, 0.19753086419753085, 0.19753086419753085, 0.19753086419753085, 0.19753086419753085, 0.19753086419753085, 0.19753086419753085, 0.19753086419753085, 0.19753086419753085, 0.19753086419753085, 0.19753086419753085, 0.19753086419753085, 0.19135802469135801, 0.19135802469135801, 0.19135802469135801, 0.19135802469135801, 0.19753086419753085, 0.19753086419753085, 0.19753086419753085, 0.19753086419753085, 0.19135802469135801, 0.19135802469135801, 0.1728395061728395, 0.17901234567901234, 0.17901234567901234, 0.17901234567901234, 0.17901234567901234, 0.17901234567901234, 0.4691358024691358, 0.17901234567901234, 0.19135802469135801, 0.17901234567901234, 0.17901234567901234, 0.17901234567901234, 0.17901234567901234, 0.1728395061728395, 0.16666666666666666, 0.16666666666666666, 0.1728395061728395, 0.1728395061728395, 0.1728395061728395, 0.1728395061728395, 0.1728395061728395, 0.1728395061728395, 0.1728395061728395, 0.1728395061728395, 0.17901234567901234, 0.17901234567901234, 0.17901234567901234, 0.1728395061728395, 0.1728395061728395, 0.1728395061728395, 0.1728395061728395, 0.1728395061728395, 0.1728395061728395, 0.16666666666666666, 0.16666666666666666, 0.16666666666666666, 0.1728395061728395, 0.1728395061728395, 0.1728395061728395, 0.1728395061728395, 0.1728395061728395, 0.17901234567901234, 0.17901234567901234, 0.18518518518518517, 0.18518518518518517, 0.18518518518518517, 0.18518518518518517, 0.18518518518518517, 0.18518518518518517, 0.18518518518518517, 0.18518518518518517, 0.18518518518518517, 0.19135802469135801, 0.18518518518518517, 0.2037037037037037, 0.2222222222222222, 0.9444444444444444, 0.2037037037037037, 0.2037037037037037, 0.20987654320987653, 0.21604938271604937, 0.19753086419753085, 0.9382716049382716, 0.9382716049382716, 0.9382716049382716, 0.9382716049382716, 0.19135802469135801, 0.19135802469135801, 0.19135802469135801, 0.19135802469135801, 0.19135802469135801, 0.19135802469135801, 0.19135802469135801, 0.19135802469135801, 0.19135802469135801, 0.2037037037037037, 0.21604938271604937, 0.2222222222222222, 0.22839506172839505, 0.24691358024691357, 0.30864197530864196, 0.32098765432098764, 0.345679012345679, 0.41975308641975306, 0.5], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF1932.gap.json b/pfam_gap_rates/DUF1932.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..98040e4d26eab572ea5bcc7db17994a9272a29a4
--- /dev/null
+++ b/pfam_gap_rates/DUF1932.gap.json
@@ -0,0 +1 @@
+{"family": "DUF1932", "n_seqs": 206, "length": 76, "gap_rates": [0.22815533980582525, 0.16019417475728157, 0.07281553398058252, 0.05825242718446602, 0.05825242718446602, 0.043689320388349516, 0.014563106796116505, 0.009708737864077669, 0.009708737864077669, 0.0048543689320388345, 0.0048543689320388345, 0.0, 0.0, 0.0, 0.0, 0.019417475728155338, 0.02912621359223301, 0.024271844660194174, 0.6359223300970874, 0.5097087378640777, 0.0, 0.0, 0.0048543689320388345, 0.0048543689320388345, 0.0048543689320388345, 0.009708737864077669, 0.05339805825242718, 0.0048543689320388345, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.009708737864077669, 0.009708737864077669, 0.05339805825242718, 0.8640776699029126, 0.941747572815534, 0.8883495145631068, 0.7475728155339806, 0.07281553398058252, 0.019417475728155338, 0.019417475728155338, 0.019417475728155338, 0.019417475728155338, 0.019417475728155338, 0.019417475728155338, 0.019417475728155338, 0.019417475728155338, 0.019417475728155338, 0.019417475728155338, 0.02912621359223301, 0.05339805825242718, 0.10679611650485436, 0.2621359223300971, 0.6213592233009708], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF1943.gap.json b/pfam_gap_rates/DUF1943.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..9903615ac38f7c52f7a44c3d1fa15779c547d6f1
--- /dev/null
+++ b/pfam_gap_rates/DUF1943.gap.json
@@ -0,0 +1 @@
+{"family": "DUF1943", "n_seqs": 267, "length": 356, "gap_rates": [0.4756554307116105, 0.37453183520599254, 0.24719101123595505, 0.24719101123595505, 0.21722846441947566, 0.20224719101123595, 0.1947565543071161, 0.18726591760299627, 0.18726591760299627, 0.18352059925093633, 0.1760299625468165, 0.16853932584269662, 0.17228464419475656, 0.9176029962546817, 0.9176029962546817, 0.9176029962546817, 0.1647940074906367, 0.14606741573033707, 0.14232209737827714, 0.149812734082397, 0.149812734082397, 0.14606741573033707, 0.14232209737827714, 0.12734082397003746, 0.12734082397003746, 0.12359550561797752, 0.12359550561797752, 0.12359550561797752, 0.12359550561797752, 0.12359550561797752, 0.1198501872659176, 0.12359550561797752, 0.11610486891385768, 0.11610486891385768, 0.11610486891385768, 0.11610486891385768, 0.11610486891385768, 0.1198501872659176, 0.11235955056179775, 0.11235955056179775, 0.11235955056179775, 0.11235955056179775, 0.11235955056179775, 0.10861423220973783, 0.11235955056179775, 0.10861423220973783, 0.10861423220973783, 0.11235955056179775, 0.11610486891385768, 0.11610486891385768, 0.8014981273408239, 0.11235955056179775, 0.11235955056179775, 0.13108614232209737, 0.11610486891385768, 0.11610486891385768, 0.1198501872659176, 0.11235955056179775, 0.10861423220973783, 0.1198501872659176, 0.11235955056179775, 0.11235955056179775, 0.1198501872659176, 0.12359550561797752, 0.12359550561797752, 0.1198501872659176, 0.12359550561797752, 0.12359550561797752, 0.1198501872659176, 0.1198501872659176, 0.19850187265917604, 0.16104868913857678, 0.17228464419475656, 0.17228464419475656, 0.44569288389513106, 0.4419475655430712, 0.4344569288389513, 0.4157303370786517, 0.4157303370786517, 0.3895131086142322, 0.37453183520599254, 0.4232209737827715, 0.44569288389513106, 0.4606741573033708, 0.45318352059925093, 0.7265917602996255, 0.7153558052434457, 0.7565543071161048, 0.7752808988764045, 0.7827715355805244, 0.7827715355805244, 0.8052434456928839, 0.8089887640449438, 0.8951310861423221, 0.9213483146067416, 0.9363295880149812, 0.9363295880149812, 0.9363295880149812, 0.9400749063670412, 0.947565543071161, 0.9438202247191011, 0.9363295880149812, 0.9363295880149812, 0.9363295880149812, 0.9325842696629213, 0.9176029962546817, 0.8764044943820225, 0.8089887640449438, 0.7940074906367042, 0.7827715355805244, 0.7752808988764045, 0.7602996254681648, 0.7453183520599251, 0.7078651685393258, 0.6441947565543071, 0.5056179775280899, 0.45318352059925093, 0.4344569288389513, 0.4044943820224719, 0.47191011235955055, 0.41198501872659177, 0.4044943820224719, 0.39325842696629215, 0.3707865168539326, 0.35580524344569286, 0.352059925093633, 0.3782771535580524, 0.3857677902621723, 0.4606741573033708, 0.47191011235955055, 0.5131086142322098, 0.5580524344569289, 0.7191011235955056, 0.9400749063670412, 0.8314606741573034, 0.5805243445692884, 0.5093632958801498, 0.42696629213483145, 0.40074906367041196, 0.3333333333333333, 0.299625468164794, 0.25842696629213485, 0.21348314606741572, 0.1647940074906367, 0.1198501872659176, 0.11610486891385768, 0.11235955056179775, 0.10861423220973783, 0.11235955056179775, 0.11235955056179775, 0.10861423220973783, 0.11235955056179775, 0.10861423220973783, 0.10861423220973783, 0.10861423220973783, 0.10861423220973783, 0.19101123595505617, 0.16104868913857678, 0.23595505617977527, 0.14606741573033707, 0.4344569288389513, 0.4307116104868914, 0.41947565543071164, 0.9363295880149812, 0.7153558052434457, 0.09363295880149813, 0.09363295880149813, 0.09363295880149813, 0.0898876404494382, 0.0898876404494382, 0.0898876404494382, 0.0898876404494382, 0.0898876404494382, 0.0898876404494382, 0.09363295880149813, 0.0898876404494382, 0.09363295880149813, 0.1947565543071161, 0.0898876404494382, 0.0898876404494382, 0.0898876404494382, 0.09363295880149813, 0.09737827715355805, 0.09363295880149813, 0.09363295880149813, 0.09363295880149813, 0.947565543071161, 0.9325842696629213, 0.5280898876404494, 0.4868913857677903, 0.45692883895131087, 0.3782771535580524, 0.3295880149812734, 0.32209737827715357, 0.3408239700374532, 0.44569288389513106, 0.41947565543071164, 0.41198501872659177, 0.5243445692883895, 0.352059925093633, 0.35580524344569286, 0.31086142322097376, 0.29213483146067415, 0.26217228464419473, 0.24344569288389514, 0.23220973782771537, 0.10861423220973783, 0.10486891385767791, 0.09737827715355805, 0.09737827715355805, 0.09363295880149813, 0.09363295880149813, 0.10486891385767791, 0.10861423220973783, 0.10861423220973783, 0.11610486891385768, 0.11235955056179775, 0.10861423220973783, 0.19850187265917604, 0.2397003745318352, 0.20973782771535582, 0.20224719101123595, 0.09363295880149813, 0.09737827715355805, 0.09363295880149813, 0.0898876404494382, 0.10112359550561797, 0.0898876404494382, 0.0898876404494382, 0.0898876404494382, 0.0898876404494382, 0.0898876404494382, 0.0898876404494382, 0.0898876404494382, 0.0898876404494382, 0.0898876404494382, 0.0898876404494382, 0.0898876404494382, 0.0898876404494382, 0.0898876404494382, 0.0898876404494382, 0.0898876404494382, 0.0898876404494382, 0.0898876404494382, 0.0898876404494382, 0.0898876404494382, 0.0898876404494382, 0.0898876404494382, 0.08614232209737828, 0.07865168539325842, 0.07865168539325842, 0.07865168539325842, 0.07865168539325842, 0.07865168539325842, 0.07865168539325842, 0.07865168539325842, 0.07865168539325842, 0.07865168539325842, 0.07865168539325842, 0.07865168539325842, 0.07865168539325842, 0.0749063670411985, 0.08239700374531835, 0.08239700374531835, 0.08239700374531835, 0.5168539325842697, 0.7602996254681648, 0.7940074906367042, 0.8352059925093633, 0.8614232209737828, 0.797752808988764, 0.7865168539325843, 0.7303370786516854, 0.6067415730337079, 0.5168539325842697, 0.4756554307116105, 0.4307116104868914, 0.37453183520599254, 0.22846441947565543, 0.19101123595505617, 0.11610486891385768, 0.11610486891385768, 0.10112359550561797, 0.09737827715355805, 0.09737827715355805, 0.1348314606741573, 0.12359550561797752, 0.0898876404494382, 0.0898876404494382, 0.0898876404494382, 0.08614232209737828, 0.08614232209737828, 0.0898876404494382, 0.09363295880149813, 0.0898876404494382, 0.08614232209737828, 0.08614232209737828, 0.0898876404494382, 0.09363295880149813, 0.09737827715355805, 0.09737827715355805, 0.09737827715355805, 0.6404494382022472, 0.10486891385767791, 0.10861423220973783, 0.7677902621722846, 0.250936329588015, 0.12359550561797752, 0.12359550561797752, 0.12359550561797752, 0.11610486891385768, 0.11610486891385768, 0.11610486891385768, 0.11610486891385768, 0.1198501872659176, 0.1198501872659176, 0.11610486891385768, 0.11610486891385768, 0.1198501872659176, 0.11610486891385768, 0.11610486891385768, 0.1198501872659176, 0.1198501872659176, 0.1198501872659176, 0.1198501872659176, 0.1198501872659176, 0.1198501872659176, 0.1198501872659176, 0.1198501872659176, 0.12359550561797752, 0.12359550561797752, 0.12734082397003746, 0.4344569288389513, 0.1760299625468165, 0.19101123595505617, 0.18726591760299627, 0.9063670411985019, 0.7865168539325843, 0.13857677902621723, 0.13857677902621723, 0.14232209737827714, 0.14232209737827714, 0.15355805243445692, 0.15730337078651685, 0.16853932584269662, 0.1797752808988764, 0.19101123595505617, 0.20224719101123595, 0.20224719101123595, 0.22846441947565543, 0.250936329588015, 0.27340823970037453, 0.2958801498127341, 0.299625468164794, 0.38202247191011235, 0.7378277153558053], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF1957.gap.json b/pfam_gap_rates/DUF1957.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f2ba72bd37d2a82813188ccf16369b4bcffc27bb
--- /dev/null
+++ b/pfam_gap_rates/DUF1957.gap.json
@@ -0,0 +1 @@
+{"family": "DUF1957", "n_seqs": 275, "length": 113, "gap_rates": [0.4290909090909091, 0.24727272727272728, 0.19272727272727272, 0.16727272727272727, 0.15636363636363637, 0.13818181818181818, 0.13454545454545455, 0.13090909090909092, 0.12363636363636364, 0.10545454545454545, 0.10181818181818182, 0.10181818181818182, 0.09454545454545454, 0.09454545454545454, 0.08727272727272728, 0.08363636363636363, 0.08, 0.9490909090909091, 0.850909090909091, 0.2690909090909091, 0.08, 0.06181818181818182, 0.9309090909090909, 0.9018181818181819, 0.03636363636363636, 0.02909090909090909, 0.007272727272727273, 0.0036363636363636364, 0.0036363636363636364, 0.0036363636363636364, 0.0036363636363636364, 0.0036363636363636364, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0036363636363636364, 0.0036363636363636364, 0.0036363636363636364, 0.0036363636363636364, 0.0036363636363636364, 0.0036363636363636364, 0.0036363636363636364, 0.0036363636363636364, 0.007272727272727273, 0.007272727272727273, 0.007272727272727273, 0.007272727272727273, 0.007272727272727273, 0.007272727272727273, 0.01090909090909091, 0.01090909090909091, 0.014545454545454545, 0.01090909090909091, 0.01818181818181818, 0.014545454545454545, 0.01090909090909091, 0.01090909090909091, 0.01090909090909091, 0.007272727272727273, 0.007272727272727273, 0.007272727272727273, 0.01090909090909091, 0.01090909090909091, 0.01090909090909091, 0.01090909090909091, 0.01090909090909091, 0.01090909090909091, 0.01818181818181818, 0.01818181818181818, 0.01818181818181818, 0.02181818181818182, 0.02181818181818182, 0.02181818181818182, 0.9309090909090909, 0.9345454545454546, 0.9309090909090909, 0.9272727272727272, 0.03272727272727273, 0.03636363636363636, 0.02909090909090909, 0.02909090909090909, 0.9345454545454546, 0.04363636363636364, 0.04, 0.03636363636363636, 0.02909090909090909, 0.8472727272727273, 0.92, 0.8290909090909091, 0.04, 0.02909090909090909, 0.025454545454545455, 0.025454545454545455, 0.025454545454545455, 0.025454545454545455, 0.02909090909090909, 0.02909090909090909, 0.02909090909090909, 0.03272727272727273, 0.03272727272727273, 0.03272727272727273, 0.03272727272727273, 0.03636363636363636, 0.04, 0.05454545454545454, 0.05818181818181818, 0.06909090909090909, 0.20363636363636364, 0.23636363636363636], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF1980.gap.json b/pfam_gap_rates/DUF1980.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..4854e742fc328b8cde11e00932d3555bd7a25b85
--- /dev/null
+++ b/pfam_gap_rates/DUF1980.gap.json
@@ -0,0 +1 @@
+{"family": "DUF1980", "n_seqs": 210, "length": 263, "gap_rates": [0.638095238095238, 0.40476190476190477, 0.3047619047619048, 0.19523809523809524, 0.10952380952380952, 0.09047619047619047, 0.0761904761904762, 0.05714285714285714, 0.05238095238095238, 0.047619047619047616, 0.0380952380952381, 0.0380952380952381, 0.0380952380952381, 0.02857142857142857, 0.023809523809523808, 0.014285714285714285, 0.014285714285714285, 0.02857142857142857, 0.009523809523809525, 0.009523809523809525, 0.009523809523809525, 0.009523809523809525, 0.009523809523809525, 0.009523809523809525, 0.009523809523809525, 0.009523809523809525, 0.009523809523809525, 0.009523809523809525, 0.009523809523809525, 0.009523809523809525, 0.009523809523809525, 0.009523809523809525, 0.009523809523809525, 0.009523809523809525, 0.009523809523809525, 0.009523809523809525, 0.009523809523809525, 0.009523809523809525, 0.009523809523809525, 0.009523809523809525, 0.009523809523809525, 0.009523809523809525, 0.009523809523809525, 0.009523809523809525, 0.009523809523809525, 0.009523809523809525, 0.009523809523809525, 0.009523809523809525, 0.009523809523809525, 0.8809523809523809, 0.8904761904761904, 0.8523809523809524, 0.014285714285714285, 0.02857142857142857, 0.023809523809523808, 0.01904761904761905, 0.014285714285714285, 0.014285714285714285, 0.009523809523809525, 0.009523809523809525, 0.35714285714285715, 0.4523809523809524, 0.6142857142857143, 0.7285714285714285, 0.8142857142857143, 0.8666666666666667, 0.9047619047619048, 0.9142857142857143, 0.9238095238095239, 0.9380952380952381, 0.9428571428571428, 0.9428571428571428, 0.9476190476190476, 0.9476190476190476, 0.9428571428571428, 0.9428571428571428, 0.9285714285714286, 0.9142857142857143, 0.9142857142857143, 0.8904761904761904, 0.8476190476190476, 0.7761904761904762, 0.680952380952381, 0.5285714285714286, 0.4, 0.3238095238095238, 0.2619047619047619, 0.5666666666666667, 0.2714285714285714, 0.22857142857142856, 0.20952380952380953, 0.2, 0.20476190476190476, 0.43333333333333335, 0.8476190476190476, 0.9380952380952381, 0.9047619047619048, 0.5666666666666667, 0.3476190476190476, 0.24285714285714285, 0.20476190476190476, 0.18095238095238095, 0.13333333333333333, 0.08571428571428572, 0.023809523809523808, 0.0380952380952381, 0.047619047619047616, 0.02857142857142857, 0.01904761904761905, 0.01904761904761905, 0.014285714285714285, 0.014285714285714285, 0.014285714285714285, 0.014285714285714285, 0.014285714285714285, 0.023809523809523808, 0.03333333333333333, 0.01904761904761905, 0.01904761904761905, 0.014285714285714285, 0.01904761904761905, 0.014285714285714285, 0.01904761904761905, 0.02857142857142857, 0.023809523809523808, 0.023809523809523808, 0.023809523809523808, 0.023809523809523808, 0.03333333333333333, 0.04285714285714286, 0.047619047619047616, 0.08095238095238096, 0.08571428571428572, 0.0761904761904762, 0.09523809523809523, 0.8857142857142857, 0.9428571428571428, 0.919047619047619, 0.8761904761904762, 0.10952380952380952, 0.12380952380952381, 0.14285714285714285, 0.1761904761904762, 0.18095238095238095, 0.19047619047619047, 0.2, 0.20952380952380953, 0.7952380952380952, 0.8, 0.8142857142857143, 0.8285714285714286, 0.8523809523809524, 0.8571428571428571, 0.8714285714285714, 0.8857142857142857, 0.9, 0.9095238095238095, 0.9095238095238095, 0.919047619047619, 0.9285714285714286, 0.9476190476190476, 0.9476190476190476, 0.9380952380952381, 0.9238095238095239, 0.9142857142857143, 0.9095238095238095, 0.9, 0.8952380952380953, 0.8714285714285714, 0.861904761904762, 0.8523809523809524, 0.8380952380952381, 0.8285714285714286, 0.8095238095238095, 0.7952380952380952, 0.7952380952380952, 0.44285714285714284, 0.6666666666666666, 0.7047619047619048, 0.680952380952381, 0.6047619047619047, 0.580952380952381, 0.4142857142857143, 0.43333333333333335, 0.42857142857142855, 0.43333333333333335, 0.4238095238095238, 0.4095238095238095, 0.42857142857142855, 0.4238095238095238, 0.43333333333333335, 0.42857142857142855, 0.42857142857142855, 0.43333333333333335, 0.45714285714285713, 0.4380952380952381, 0.8333333333333334, 0.8857142857142857, 0.919047619047619, 0.9285714285714286, 0.9476190476190476, 0.919047619047619, 0.8952380952380953, 0.8666666666666667, 0.8, 0.4857142857142857, 0.49523809523809526, 0.5, 0.4857142857142857, 0.48095238095238096, 0.47619047619047616, 0.45714285714285713, 0.45714285714285713, 0.9476190476190476, 0.9476190476190476, 0.45714285714285713, 0.4523809523809524, 0.46190476190476193, 0.4714285714285714, 0.4714285714285714, 0.4714285714285714, 0.4714285714285714, 0.4666666666666667, 0.5285714285714286, 0.5238095238095238, 0.5285714285714286, 0.5, 0.9428571428571428, 0.9428571428571428, 0.9428571428571428, 0.9428571428571428, 0.9333333333333333, 0.4666666666666667, 0.46190476190476193, 0.44761904761904764, 0.44761904761904764, 0.44761904761904764, 0.44761904761904764, 0.44761904761904764, 0.44285714285714284, 0.44285714285714284, 0.44285714285714284, 0.44285714285714284, 0.44285714285714284, 0.44285714285714284, 0.44285714285714284, 0.44285714285714284, 0.44285714285714284, 0.44285714285714284, 0.44285714285714284, 0.44285714285714284, 0.44285714285714284, 0.44285714285714284, 0.44285714285714284, 0.44285714285714284, 0.44285714285714284, 0.44285714285714284, 0.44285714285714284, 0.44761904761904764, 0.44761904761904764, 0.44761904761904764, 0.44761904761904764, 0.48095238095238096], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF2000.gap.json b/pfam_gap_rates/DUF2000.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..6e481236b52a4d48d1dd477b5253772b0b2d9f35
--- /dev/null
+++ b/pfam_gap_rates/DUF2000.gap.json
@@ -0,0 +1 @@
+{"family": "DUF2000", "n_seqs": 190, "length": 141, "gap_rates": [0.3157894736842105, 0.1, 0.09473684210526316, 0.07894736842105263, 0.06315789473684211, 0.06315789473684211, 0.05263157894736842, 0.042105263157894736, 0.042105263157894736, 0.03684210526315789, 0.03684210526315789, 0.031578947368421054, 0.02631578947368421, 0.02631578947368421, 0.02631578947368421, 0.02631578947368421, 0.015789473684210527, 0.015789473684210527, 0.015789473684210527, 0.015789473684210527, 0.015789473684210527, 0.015789473684210527, 0.015789473684210527, 0.015789473684210527, 0.015789473684210527, 0.015789473684210527, 0.015789473684210527, 0.015789473684210527, 0.015789473684210527, 0.021052631578947368, 0.8526315789473684, 0.9157894736842105, 0.8368421052631579, 0.031578947368421054, 0.02631578947368421, 0.02631578947368421, 0.9473684210526315, 0.9263157894736842, 0.021052631578947368, 0.021052631578947368, 0.021052631578947368, 0.021052631578947368, 0.021052631578947368, 0.021052631578947368, 0.021052631578947368, 0.02631578947368421, 0.02631578947368421, 0.02631578947368421, 0.02631578947368421, 0.02631578947368421, 0.02631578947368421, 0.02631578947368421, 0.031578947368421054, 0.02631578947368421, 0.05263157894736842, 0.02631578947368421, 0.02631578947368421, 0.02631578947368421, 0.02631578947368421, 0.02631578947368421, 0.02631578947368421, 0.02631578947368421, 0.031578947368421054, 0.03684210526315789, 0.03684210526315789, 0.8157894736842105, 0.03684210526315789, 0.03684210526315789, 0.031578947368421054, 0.031578947368421054, 0.031578947368421054, 0.031578947368421054, 0.03684210526315789, 0.03684210526315789, 0.042105263157894736, 0.042105263157894736, 0.03684210526315789, 0.03684210526315789, 0.03684210526315789, 0.03684210526315789, 0.03684210526315789, 0.7684210526315789, 0.7210526315789474, 0.5736842105263158, 0.042105263157894736, 0.03684210526315789, 0.03684210526315789, 0.03684210526315789, 0.03684210526315789, 0.03684210526315789, 0.03684210526315789, 0.03684210526315789, 0.03684210526315789, 0.03684210526315789, 0.03684210526315789, 0.03684210526315789, 0.03684210526315789, 0.03684210526315789, 0.03684210526315789, 0.042105263157894736, 0.04736842105263158, 0.042105263157894736, 0.04736842105263158, 0.03684210526315789, 0.042105263157894736, 0.042105263157894736, 0.03684210526315789, 0.042105263157894736, 0.18421052631578946, 0.04736842105263158, 0.03684210526315789, 0.03684210526315789, 0.042105263157894736, 0.042105263157894736, 0.042105263157894736, 0.042105263157894736, 0.042105263157894736, 0.042105263157894736, 0.042105263157894736, 0.042105263157894736, 0.042105263157894736, 0.042105263157894736, 0.042105263157894736, 0.042105263157894736, 0.042105263157894736, 0.042105263157894736, 0.042105263157894736, 0.042105263157894736, 0.042105263157894736, 0.042105263157894736, 0.042105263157894736, 0.042105263157894736, 0.042105263157894736, 0.042105263157894736, 0.042105263157894736, 0.042105263157894736, 0.042105263157894736, 0.042105263157894736, 0.05263157894736842, 0.06842105263157895, 0.5052631578947369], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF2003.gap.json b/pfam_gap_rates/DUF2003.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f150488ad1ef82c532974537df758b57065df728
--- /dev/null
+++ b/pfam_gap_rates/DUF2003.gap.json
@@ -0,0 +1 @@
+{"family": "DUF2003", "n_seqs": 115, "length": 460, "gap_rates": [0.8260869565217391, 0.8173913043478261, 0.808695652173913, 0.7565217391304347, 0.6956521739130435, 0.6869565217391305, 0.6869565217391305, 0.6869565217391305, 0.6, 0.5478260869565217, 0.5391304347826087, 0.5391304347826087, 0.5391304347826087, 0.5391304347826087, 0.5391304347826087, 0.5391304347826087, 0.5391304347826087, 0.5391304347826087, 0.5391304347826087, 0.5391304347826087, 0.5391304347826087, 0.5391304347826087, 0.5391304347826087, 0.5391304347826087, 0.5391304347826087, 0.5391304347826087, 0.5391304347826087, 0.5391304347826087, 0.5391304347826087, 0.5391304347826087, 0.5304347826086957, 0.5304347826086957, 0.5304347826086957, 0.5478260869565217, 0.5478260869565217, 0.5652173913043478, 0.5478260869565217, 0.5478260869565217, 0.8434782608695652, 0.8956521739130435, 0.8956521739130435, 0.8608695652173913, 0.782608695652174, 0.5391304347826087, 0.5304347826086957, 0.5130434782608696, 0.5130434782608696, 0.5043478260869565, 0.4956521739130435, 0.4956521739130435, 0.48695652173913045, 0.48695652173913045, 0.48695652173913045, 0.4782608695652174, 0.4782608695652174, 0.4782608695652174, 0.4782608695652174, 0.4782608695652174, 0.4782608695652174, 0.46956521739130436, 0.46956521739130436, 0.46956521739130436, 0.46956521739130436, 0.4608695652173913, 0.4608695652173913, 0.46956521739130436, 0.46956521739130436, 0.46956521739130436, 0.46956521739130436, 0.46956521739130436, 0.46956521739130436, 0.4608695652173913, 0.46956521739130436, 0.46956521739130436, 0.8260869565217391, 0.8260869565217391, 0.7652173913043478, 0.7478260869565218, 0.5217391304347826, 0.5043478260869565, 0.45217391304347826, 0.4608695652173913, 0.4608695652173913, 0.4608695652173913, 0.4608695652173913, 0.46956521739130436, 0.46956521739130436, 0.46956521739130436, 0.46956521739130436, 0.46956521739130436, 0.46956521739130436, 0.46956521739130436, 0.46956521739130436, 0.46956521739130436, 0.46956521739130436, 0.46956521739130436, 0.46956521739130436, 0.46956521739130436, 0.46956521739130436, 0.4782608695652174, 0.48695652173913045, 0.4782608695652174, 0.4782608695652174, 0.591304347826087, 0.5565217391304348, 0.5478260869565217, 0.5304347826086957, 0.5304347826086957, 0.5391304347826087, 0.5478260869565217, 0.5391304347826087, 0.5391304347826087, 0.5391304347826087, 0.5304347826086957, 0.5391304347826087, 0.5391304347826087, 0.5043478260869565, 0.5043478260869565, 0.4956521739130435, 0.4782608695652174, 0.45217391304347826, 0.40869565217391307, 0.4, 0.40869565217391307, 0.3826086956521739, 0.3739130434782609, 0.3652173913043478, 0.3652173913043478, 0.3652173913043478, 0.3652173913043478, 0.3652173913043478, 0.3652173913043478, 0.3652173913043478, 0.3652173913043478, 0.3565217391304348, 0.3565217391304348, 0.3565217391304348, 0.3565217391304348, 0.3565217391304348, 0.34782608695652173, 0.34782608695652173, 0.3565217391304348, 0.34782608695652173, 0.34782608695652173, 0.3652173913043478, 0.3739130434782609, 0.3652173913043478, 0.3652173913043478, 0.3652173913043478, 0.3826086956521739, 0.3826086956521739, 0.4, 0.40869565217391307, 0.9478260869565217, 0.3565217391304348, 0.3826086956521739, 0.3826086956521739, 0.34782608695652173, 0.3565217391304348, 0.3565217391304348, 0.3565217391304348, 0.34782608695652173, 0.3391304347826087, 0.33043478260869563, 0.33043478260869563, 0.3391304347826087, 0.33043478260869563, 0.33043478260869563, 0.3565217391304348, 0.34782608695652173, 0.3391304347826087, 0.34782608695652173, 0.3391304347826087, 0.3391304347826087, 0.3565217391304348, 0.3391304347826087, 0.33043478260869563, 0.33043478260869563, 0.3391304347826087, 0.33043478260869563, 0.34782608695652173, 0.33043478260869563, 0.33043478260869563, 0.3217391304347826, 0.3130434782608696, 0.3130434782608696, 0.3217391304347826, 0.3217391304347826, 0.3130434782608696, 0.3130434782608696, 0.3130434782608696, 0.3130434782608696, 0.3130434782608696, 0.3130434782608696, 0.30434782608695654, 0.30434782608695654, 0.30434782608695654, 0.3130434782608696, 0.30434782608695654, 0.30434782608695654, 0.30434782608695654, 0.30434782608695654, 0.30434782608695654, 0.30434782608695654, 0.30434782608695654, 0.30434782608695654, 0.3130434782608696, 0.3130434782608696, 0.3130434782608696, 0.3130434782608696, 0.3130434782608696, 0.3130434782608696, 0.3130434782608696, 0.3130434782608696, 0.3130434782608696, 0.3130434782608696, 0.3130434782608696, 0.3130434782608696, 0.3130434782608696, 0.3130434782608696, 0.3130434782608696, 0.3130434782608696, 0.3130434782608696, 0.3130434782608696, 0.3130434782608696, 0.3130434782608696, 0.33043478260869563, 0.3652173913043478, 0.3826086956521739, 0.3826086956521739, 0.3826086956521739, 0.40869565217391307, 0.41739130434782606, 0.41739130434782606, 0.40869565217391307, 0.3826086956521739, 0.4260869565217391, 0.8608695652173913, 0.9478260869565217, 0.8782608695652174, 0.8347826086956521, 0.4782608695652174, 0.4608695652173913, 0.4260869565217391, 0.41739130434782606, 0.40869565217391307, 0.3739130434782609, 0.4, 0.391304347826087, 0.391304347826087, 0.391304347826087, 0.34782608695652173, 0.34782608695652173, 0.33043478260869563, 0.30434782608695654, 0.30434782608695654, 0.30434782608695654, 0.30434782608695654, 0.30434782608695654, 0.3130434782608696, 0.3130434782608696, 0.3130434782608696, 0.3130434782608696, 0.3130434782608696, 0.3130434782608696, 0.3130434782608696, 0.3130434782608696, 0.3130434782608696, 0.30434782608695654, 0.30434782608695654, 0.2956521739130435, 0.2956521739130435, 0.28695652173913044, 0.2956521739130435, 0.2956521739130435, 0.2956521739130435, 0.2956521739130435, 0.2956521739130435, 0.30434782608695654, 0.30434782608695654, 0.30434782608695654, 0.2956521739130435, 0.2956521739130435, 0.9478260869565217, 0.2956521739130435, 0.3217391304347826, 0.30434782608695654, 0.2956521739130435, 0.30434782608695654, 0.30434782608695654, 0.9478260869565217, 0.30434782608695654, 0.9478260869565217, 0.3130434782608696, 0.30434782608695654, 0.30434782608695654, 0.30434782608695654, 0.30434782608695654, 0.30434782608695654, 0.30434782608695654, 0.2956521739130435, 0.2956521739130435, 0.2956521739130435, 0.2956521739130435, 0.2956521739130435, 0.28695652173913044, 0.28695652173913044, 0.28695652173913044, 0.28695652173913044, 0.28695652173913044, 0.28695652173913044, 0.2956521739130435, 0.2956521739130435, 0.2956521739130435, 0.2956521739130435, 0.2956521739130435, 0.2956521739130435, 0.30434782608695654, 0.2956521739130435, 0.2956521739130435, 0.2956521739130435, 0.2956521739130435, 0.2956521739130435, 0.3217391304347826, 0.30434782608695654, 0.30434782608695654, 0.30434782608695654, 0.3217391304347826, 0.9391304347826087, 0.8260869565217391, 0.34782608695652173, 0.9304347826086956, 0.3130434782608696, 0.34782608695652173, 0.3130434782608696, 0.30434782608695654, 0.3217391304347826, 0.3217391304347826, 0.3217391304347826, 0.3217391304347826, 0.3217391304347826, 0.3217391304347826, 0.3391304347826087, 0.3826086956521739, 0.3391304347826087, 0.33043478260869563, 0.3217391304347826, 0.3217391304347826, 0.33043478260869563, 0.3217391304347826, 0.3130434782608696, 0.2956521739130435, 0.2956521739130435, 0.28695652173913044, 0.28695652173913044, 0.28695652173913044, 0.28695652173913044, 0.2956521739130435, 0.2956521739130435, 0.2956521739130435, 0.2956521739130435, 0.2956521739130435, 0.30434782608695654, 0.8608695652173913, 0.9304347826086956, 0.7478260869565218, 0.3391304347826087, 0.30434782608695654, 0.2782608695652174, 0.2782608695652174, 0.2782608695652174, 0.2782608695652174, 0.30434782608695654, 0.28695652173913044, 0.28695652173913044, 0.26956521739130435, 0.26956521739130435, 0.2782608695652174, 0.26956521739130435, 0.26956521739130435, 0.26956521739130435, 0.2782608695652174, 0.2782608695652174, 0.8782608695652174, 0.9478260869565217, 0.9391304347826087, 0.8782608695652174, 0.26956521739130435, 0.28695652173913044, 0.2782608695652174, 0.26956521739130435, 0.26956521739130435, 0.2956521739130435, 0.2782608695652174, 0.2608695652173913, 0.2608695652173913, 0.26956521739130435, 0.26956521739130435, 0.2782608695652174, 0.2782608695652174, 0.2782608695652174, 0.2956521739130435, 0.30434782608695654, 0.30434782608695654, 0.3130434782608696, 0.3217391304347826, 0.3217391304347826, 0.3130434782608696, 0.30434782608695654, 0.30434782608695654, 0.3130434782608696, 0.3217391304347826, 0.3217391304347826, 0.3217391304347826, 0.3217391304347826, 0.3217391304347826, 0.3217391304347826, 0.3217391304347826, 0.3217391304347826, 0.3130434782608696, 0.3130434782608696, 0.3130434782608696, 0.3130434782608696, 0.3130434782608696, 0.3130434782608696, 0.3217391304347826, 0.3130434782608696, 0.3130434782608696, 0.3130434782608696, 0.3217391304347826, 0.3217391304347826, 0.3217391304347826, 0.3217391304347826, 0.33043478260869563, 0.33043478260869563, 0.33043478260869563, 0.33043478260869563, 0.33043478260869563, 0.33043478260869563, 0.3391304347826087, 0.3391304347826087, 0.34782608695652173, 0.3565217391304348, 0.3739130434782609, 0.3826086956521739, 0.4, 0.4, 0.40869565217391307, 0.40869565217391307, 0.41739130434782606, 0.41739130434782606, 0.43478260869565216, 0.45217391304347826, 0.4956521739130435, 0.5217391304347826, 0.5652173913043478, 0.6521739130434783, 0.6782608695652174, 0.6782608695652174, 0.6956521739130435], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF2007.gap.json b/pfam_gap_rates/DUF2007.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..2bb1a9c5a3d6b3f026cc160e983b58f3d745104d
--- /dev/null
+++ b/pfam_gap_rates/DUF2007.gap.json
@@ -0,0 +1 @@
+{"family": "DUF2007", "n_seqs": 655, "length": 76, "gap_rates": [0.5053435114503817, 0.3267175572519084, 0.24427480916030533, 0.1969465648854962, 0.1801526717557252, 0.15267175572519084, 0.19236641221374046, 0.12213740458015267, 0.10229007633587786, 0.08854961832061069, 0.07022900763358779, 0.0366412213740458, 0.030534351145038167, 0.024427480916030534, 0.012213740458015267, 0.00916030534351145, 0.007633587786259542, 0.0061068702290076335, 0.004580152671755725, 0.004580152671755725, 0.0030534351145038168, 0.0030534351145038168, 0.0030534351145038168, 0.0030534351145038168, 0.0030534351145038168, 0.0030534351145038168, 0.0030534351145038168, 0.0030534351145038168, 0.0030534351145038168, 0.0030534351145038168, 0.010687022900763359, 0.0, 0.013740458015267175, 0.6687022900763359, 0.33587786259541985, 0.31755725190839695, 0.27938931297709924, 0.022900763358778626, 0.022900763358778626, 0.059541984732824425, 0.044274809160305344, 0.9099236641221374, 0.7938931297709924, 0.07480916030534351, 0.9450381679389313, 0.1099236641221374, 0.13893129770992366, 0.13129770992366413, 0.07938931297709924, 0.6763358778625954, 0.7526717557251908, 0.833587786259542, 0.7343511450381679, 0.5618320610687023, 0.0030534351145038168, 0.0030534351145038168, 0.0030534351145038168, 0.0030534351145038168, 0.0030534351145038168, 0.9022900763358779, 0.0030534351145038168, 0.0030534351145038168, 0.0030534351145038168, 0.004580152671755725, 0.0030534351145038168, 0.0030534351145038168, 0.0030534351145038168, 0.004580152671755725, 0.0061068702290076335, 0.007633587786259542, 0.013740458015267175, 0.02900763358778626, 0.09618320610687023, 0.22748091603053436, 0.43206106870229005, 0.8763358778625954], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF2039.gap.json b/pfam_gap_rates/DUF2039.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..24ed9336de6d4d6f8e83250674a77ae0e4bb66d5
--- /dev/null
+++ b/pfam_gap_rates/DUF2039.gap.json
@@ -0,0 +1 @@
+{"family": "DUF2039", "n_seqs": 132, "length": 94, "gap_rates": [0.17424242424242425, 0.12121212121212122, 0.12121212121212122, 0.10606060606060606, 0.09090909090909091, 0.08333333333333333, 0.07575757575757576, 0.07575757575757576, 0.07575757575757576, 0.07575757575757576, 0.07575757575757576, 0.07575757575757576, 0.07575757575757576, 0.07575757575757576, 0.36363636363636365, 0.36363636363636365, 0.9318181818181818, 0.11363636363636363, 0.10606060606060606, 0.08333333333333333, 0.07575757575757576, 0.06818181818181818, 0.06818181818181818, 0.06818181818181818, 0.06060606060606061, 0.05303030303030303, 0.05303030303030303, 0.7575757575757576, 0.7803030303030303, 0.7803030303030303, 0.75, 0.03787878787878788, 0.03787878787878788, 0.015151515151515152, 0.015151515151515152, 0.015151515151515152, 0.015151515151515152, 0.015151515151515152, 0.015151515151515152, 0.015151515151515152, 0.015151515151515152, 0.015151515151515152, 0.015151515151515152, 0.015151515151515152, 0.015151515151515152, 0.015151515151515152, 0.015151515151515152, 0.015151515151515152, 0.015151515151515152, 0.022727272727272728, 0.022727272727272728, 0.022727272727272728, 0.030303030303030304, 0.030303030303030304, 0.030303030303030304, 0.030303030303030304, 0.030303030303030304, 0.030303030303030304, 0.030303030303030304, 0.030303030303030304, 0.03787878787878788, 0.03787878787878788, 0.022727272727272728, 0.022727272727272728, 0.030303030303030304, 0.03787878787878788, 0.030303030303030304, 0.030303030303030304, 0.030303030303030304, 0.030303030303030304, 0.030303030303030304, 0.030303030303030304, 0.030303030303030304, 0.030303030303030304, 0.030303030303030304, 0.030303030303030304, 0.030303030303030304, 0.030303030303030304, 0.030303030303030304, 0.045454545454545456, 0.045454545454545456, 0.045454545454545456, 0.045454545454545456, 0.045454545454545456, 0.045454545454545456, 0.05303030303030303, 0.07575757575757576, 0.07575757575757576, 0.07575757575757576, 0.07575757575757576, 0.07575757575757576, 0.08333333333333333, 0.25, 0.8712121212121212], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF2059.gap.json b/pfam_gap_rates/DUF2059.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..8ad66605f4759737fc8917011f7ed455edbc210d
--- /dev/null
+++ b/pfam_gap_rates/DUF2059.gap.json
@@ -0,0 +1 @@
+{"family": "DUF2059", "n_seqs": 305, "length": 61, "gap_rates": [0.7377049180327869, 0.380327868852459, 0.23278688524590163, 0.18032786885245902, 0.1180327868852459, 0.08524590163934426, 0.05901639344262295, 0.04590163934426229, 0.02622950819672131, 0.022950819672131147, 0.019672131147540985, 0.013114754098360656, 0.009836065573770493, 0.003278688524590164, 0.003278688524590164, 0.003278688524590164, 0.003278688524590164, 0.003278688524590164, 0.019672131147540985, 0.019672131147540985, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.003278688524590164, 0.003278688524590164, 0.003278688524590164, 0.006557377049180328, 0.013114754098360656, 0.01639344262295082, 0.01639344262295082, 0.019672131147540985, 0.029508196721311476, 0.03278688524590164, 0.03934426229508197, 0.06229508196721312, 0.08196721311475409, 0.08196721311475409, 0.08852459016393442, 0.7377049180327869, 0.09836065573770492, 0.11147540983606558, 0.14098360655737704, 0.1540983606557377, 0.16393442622950818, 0.20655737704918034, 0.2360655737704918, 0.2786885245901639, 0.3344262295081967, 0.4557377049180328, 0.6327868852459017, 0.8327868852459016], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF2061.gap.json b/pfam_gap_rates/DUF2061.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..3107c196b29e55743d894cf76dce5a05d7ccf5e8
--- /dev/null
+++ b/pfam_gap_rates/DUF2061.gap.json
@@ -0,0 +1 @@
+{"family": "DUF2061", "n_seqs": 229, "length": 52, "gap_rates": [0.314410480349345, 0.08296943231441048, 0.056768558951965066, 0.05240174672489083, 0.039301310043668124, 0.034934497816593885, 0.034934497816593885, 0.034934497816593885, 0.034934497816593885, 0.03056768558951965, 0.03056768558951965, 0.026200873362445413, 0.026200873362445413, 0.026200873362445413, 0.021834061135371178, 0.021834061135371178, 0.021834061135371178, 0.021834061135371178, 0.017467248908296942, 0.017467248908296942, 0.017467248908296942, 0.013100436681222707, 0.013100436681222707, 0.013100436681222707, 0.013100436681222707, 0.013100436681222707, 0.013100436681222707, 0.013100436681222707, 0.013100436681222707, 0.013100436681222707, 0.013100436681222707, 0.008733624454148471, 0.008733624454148471, 0.004366812227074236, 0.004366812227074236, 0.004366812227074236, 0.004366812227074236, 0.004366812227074236, 0.004366812227074236, 0.008733624454148471, 0.008733624454148471, 0.008733624454148471, 0.008733624454148471, 0.008733624454148471, 0.013100436681222707, 0.013100436681222707, 0.013100436681222707, 0.013100436681222707, 0.013100436681222707, 0.017467248908296942, 0.039301310043668124, 0.21397379912663755], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF208.gap.json b/pfam_gap_rates/DUF208.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..1e0ac981355aeb954f94790f06123fead137c54f
--- /dev/null
+++ b/pfam_gap_rates/DUF208.gap.json
@@ -0,0 +1 @@
+{"family": "DUF208", "n_seqs": 646, "length": 186, "gap_rates": [0.09907120743034056, 0.06191950464396285, 0.05572755417956656, 0.05572755417956656, 0.05263157894736842, 0.05263157894736842, 0.04953560371517028, 0.04953560371517028, 0.04953560371517028, 0.04953560371517028, 0.04953560371517028, 0.05108359133126935, 0.05108359133126935, 0.047987616099071206, 0.04489164086687306, 0.04024767801857585, 0.04024767801857585, 0.04024767801857585, 0.03715170278637771, 0.03560371517027864, 0.4582043343653251, 0.9458204334365325, 0.93343653250774, 0.04179566563467492, 0.03560371517027864, 0.03560371517027864, 0.03560371517027864, 0.034055727554179564, 0.034055727554179564, 0.034055727554179564, 0.034055727554179564, 0.034055727554179564, 0.034055727554179564, 0.034055727554179564, 0.034055727554179564, 0.034055727554179564, 0.034055727554179564, 0.034055727554179564, 0.034055727554179564, 0.032507739938080496, 0.032507739938080496, 0.032507739938080496, 0.032507739938080496, 0.032507739938080496, 0.032507739938080496, 0.032507739938080496, 0.032507739938080496, 0.032507739938080496, 0.032507739938080496, 0.034055727554179564, 0.034055727554179564, 0.034055727554179564, 0.032507739938080496, 0.030959752321981424, 0.030959752321981424, 0.030959752321981424, 0.6470588235294118, 0.6904024767801857, 0.868421052631579, 0.8668730650154799, 0.6780185758513931, 0.6346749226006192, 0.030959752321981424, 0.032507739938080496, 0.030959752321981424, 0.030959752321981424, 0.030959752321981424, 0.02786377708978328, 0.02786377708978328, 0.02786377708978328, 0.7770897832817337, 0.029411764705882353, 0.029411764705882353, 0.030959752321981424, 0.029411764705882353, 0.029411764705882353, 0.029411764705882353, 0.029411764705882353, 0.029411764705882353, 0.029411764705882353, 0.02786377708978328, 0.19504643962848298, 0.24458204334365324, 0.1238390092879257, 0.09597523219814241, 0.09907120743034056, 0.07739938080495357, 0.08513931888544891, 0.19659442724458204, 0.1780185758513932, 0.12693498452012383, 0.02786377708978328, 0.02631578947368421, 0.02631578947368421, 0.02631578947368421, 0.02476780185758514, 0.02476780185758514, 0.02476780185758514, 0.02476780185758514, 0.02321981424148607, 0.02321981424148607, 0.021671826625386997, 0.021671826625386997, 0.021671826625386997, 0.02321981424148607, 0.02631578947368421, 0.02631578947368421, 0.02476780185758514, 0.02631578947368421, 0.02631578947368421, 0.030959752321981424, 0.02786377708978328, 0.02631578947368421, 0.02476780185758514, 0.02476780185758514, 0.02476780185758514, 0.02476780185758514, 0.02476780185758514, 0.02476780185758514, 0.02476780185758514, 0.02476780185758514, 0.02476780185758514, 0.02476780185758514, 0.02476780185758514, 0.02476780185758514, 0.02476780185758514, 0.02476780185758514, 0.02476780185758514, 0.02476780185758514, 0.02476780185758514, 0.02476780185758514, 0.02476780185758514, 0.02476780185758514, 0.02631578947368421, 0.02786377708978328, 0.02786377708978328, 0.02786377708978328, 0.02786377708978328, 0.02631578947368421, 0.02786377708978328, 0.03869969040247678, 0.9210526315789473, 0.05727554179566564, 0.04643962848297214, 0.8746130030959752, 0.03715170278637771, 0.03560371517027864, 0.030959752321981424, 0.02786377708978328, 0.02631578947368421, 0.02631578947368421, 0.029411764705882353, 0.02786377708978328, 0.02786377708978328, 0.02786377708978328, 0.29876160990712075, 0.29721362229102166, 0.032507739938080496, 0.032507739938080496, 0.029411764705882353, 0.029411764705882353, 0.029411764705882353, 0.02786377708978328, 0.02786377708978328, 0.02786377708978328, 0.029411764705882353, 0.029411764705882353, 0.02786377708978328, 0.029411764705882353, 0.029411764705882353, 0.02786377708978328, 0.02786377708978328, 0.02786377708978328, 0.02786377708978328, 0.02786377708978328, 0.029411764705882353, 0.029411764705882353, 0.029411764705882353, 0.029411764705882353, 0.029411764705882353, 0.029411764705882353, 0.03715170278637771, 0.03715170278637771, 0.05572755417956656, 0.24148606811145512, 0.8095975232198143], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF212.gap.json b/pfam_gap_rates/DUF212.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..3240c96d8f97f4231c1d8314a3539ee082d4445e
--- /dev/null
+++ b/pfam_gap_rates/DUF212.gap.json
@@ -0,0 +1 @@
+{"family": "DUF212", "n_seqs": 612, "length": 157, "gap_rates": [0.9199346405228758, 0.4362745098039216, 0.2238562091503268, 0.16830065359477125, 0.09313725490196079, 0.08169934640522876, 0.07516339869281045, 0.07026143790849673, 0.06862745098039216, 0.06862745098039216, 0.06862745098039216, 0.06862745098039216, 0.06699346405228758, 0.06699346405228758, 0.06699346405228758, 0.06699346405228758, 0.06699346405228758, 0.06699346405228758, 0.06699346405228758, 0.06535947712418301, 0.06535947712418301, 0.06535947712418301, 0.06372549019607843, 0.06372549019607843, 0.12091503267973856, 0.08169934640522876, 0.07352941176470588, 0.06862745098039216, 0.06699346405228758, 0.06699346405228758, 0.06209150326797386, 0.058823529411764705, 0.058823529411764705, 0.05718954248366013, 0.06372549019607843, 0.05392156862745098, 0.05555555555555555, 0.05392156862745098, 0.05392156862745098, 0.05392156862745098, 0.05392156862745098, 0.03594771241830065, 0.03431372549019608, 0.032679738562091505, 0.03431372549019608, 0.03431372549019608, 0.03431372549019608, 0.03431372549019608, 0.03431372549019608, 0.03594771241830065, 0.03758169934640523, 0.03758169934640523, 0.03758169934640523, 0.03758169934640523, 0.03758169934640523, 0.03758169934640523, 0.03594771241830065, 0.03594771241830065, 0.03594771241830065, 0.03594771241830065, 0.03758169934640523, 0.03758169934640523, 0.03758169934640523, 0.042483660130718956, 0.04411764705882353, 0.03594771241830065, 0.03758169934640523, 0.03594771241830065, 0.03594771241830065, 0.03431372549019608, 0.032679738562091505, 0.032679738562091505, 0.032679738562091505, 0.03104575163398693, 0.03104575163398693, 0.03104575163398693, 0.032679738562091505, 0.032679738562091505, 0.027777777777777776, 0.027777777777777776, 0.027777777777777776, 0.027777777777777776, 0.024509803921568627, 0.024509803921568627, 0.024509803921568627, 0.024509803921568627, 0.024509803921568627, 0.024509803921568627, 0.026143790849673203, 0.027777777777777776, 0.03104575163398693, 0.032679738562091505, 0.03104575163398693, 0.027777777777777776, 0.027777777777777776, 0.029411764705882353, 0.029411764705882353, 0.03104575163398693, 0.03104575163398693, 0.03104575163398693, 0.06699346405228758, 0.08823529411764706, 0.12418300653594772, 0.32516339869281047, 0.673202614379085, 0.696078431372549, 0.7238562091503268, 0.8006535947712419, 0.8202614379084967, 0.923202614379085, 0.9330065359477124, 0.9395424836601307, 0.946078431372549, 0.9493464052287581, 0.9493464052287581, 0.9411764705882353, 0.9379084967320261, 0.9248366013071896, 0.9166666666666666, 0.8071895424836601, 0.7336601307189542, 0.7026143790849673, 0.6879084967320261, 0.5555555555555556, 0.15849673202614378, 0.10784313725490197, 0.07516339869281045, 0.06045751633986928, 0.042483660130718956, 0.09803921568627451, 0.09313725490196079, 0.0457516339869281, 0.9493464052287581, 0.04411764705882353, 0.04084967320261438, 0.042483660130718956, 0.042483660130718956, 0.0457516339869281, 0.04084967320261438, 0.03758169934640523, 0.03758169934640523, 0.03758169934640523, 0.0392156862745098, 0.0392156862745098, 0.0392156862745098, 0.04084967320261438, 0.049019607843137254, 0.049019607843137254, 0.05228758169934641, 0.05555555555555555, 0.05555555555555555, 0.05555555555555555, 0.058823529411764705, 0.06372549019607843, 0.06535947712418301, 0.08333333333333333, 0.44281045751633985], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF2141.gap.json b/pfam_gap_rates/DUF2141.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f882d093e74700c922c5899ee3829196863aa1df
--- /dev/null
+++ b/pfam_gap_rates/DUF2141.gap.json
@@ -0,0 +1 @@
+{"family": "DUF2141", "n_seqs": 292, "length": 124, "gap_rates": [0.2910958904109589, 0.17123287671232876, 0.1232876712328767, 0.11301369863013698, 0.11301369863013698, 0.11301369863013698, 0.09931506849315068, 0.07876712328767123, 0.0684931506849315, 0.04794520547945205, 0.03767123287671233, 0.03767123287671233, 0.03767123287671233, 0.0273972602739726, 0.0273972602739726, 0.0273972602739726, 0.0273972602739726, 0.03424657534246575, 0.8595890410958904, 0.1232876712328767, 0.0684931506849315, 0.03424657534246575, 0.0273972602739726, 0.03424657534246575, 0.0410958904109589, 0.1404109589041096, 0.13013698630136986, 0.9383561643835616, 0.8904109589041096, 0.2054794520547945, 0.1232876712328767, 0.0821917808219178, 0.03767123287671233, 0.0410958904109589, 0.05136986301369863, 0.03424657534246575, 0.03424657534246575, 0.05136986301369863, 0.05821917808219178, 0.0410958904109589, 0.04794520547945205, 0.1095890410958904, 0.20205479452054795, 0.928082191780822, 0.934931506849315, 0.9417808219178082, 0.9417808219178082, 0.934931506849315, 0.9315068493150684, 0.9143835616438356, 0.02054794520547945, 0.003424657534246575, 0.003424657534246575, 0.003424657534246575, 0.0, 0.0, 0.0, 0.00684931506849315, 0.0410958904109589, 0.0273972602739726, 0.0, 0.003424657534246575, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.00684931506849315, 0.00684931506849315, 0.00684931506849315, 0.00684931506849315, 0.00684931506849315, 0.003424657534246575, 0.003424657534246575, 0.003424657534246575, 0.003424657534246575, 0.003424657534246575, 0.003424657534246575, 0.2363013698630137, 0.11643835616438356, 0.11643835616438356, 0.11643835616438356, 0.11301369863013698, 0.03424657534246575, 0.00684931506849315, 0.00684931506849315, 0.00684931506849315, 0.010273972602739725, 0.017123287671232876, 0.0273972602739726, 0.0273972602739726, 0.030821917808219176, 0.030821917808219176, 0.17123287671232876, 0.0684931506849315, 0.05821917808219178, 0.09246575342465753, 0.9417808219178082, 0.910958904109589, 0.05136986301369863, 0.04452054794520548, 0.04452054794520548, 0.04452054794520548, 0.04452054794520548, 0.04452054794520548, 0.04452054794520548, 0.04452054794520548, 0.04452054794520548, 0.04452054794520548, 0.05136986301369863, 0.0547945205479452, 0.9452054794520548, 0.09246575342465753, 0.11986301369863013, 0.17465753424657535, 0.2842465753424658, 0.4897260273972603, 0.6746575342465754, 0.7945205479452054], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF2157.gap.json b/pfam_gap_rates/DUF2157.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..6828109311bd54da34478b299bbdb7c73a4cadbf
--- /dev/null
+++ b/pfam_gap_rates/DUF2157.gap.json
@@ -0,0 +1 @@
+{"family": "DUF2157", "n_seqs": 295, "length": 164, "gap_rates": [0.8949152542372881, 0.5016949152542373, 0.4, 0.3254237288135593, 0.2677966101694915, 0.2576271186440678, 0.2542372881355932, 0.24745762711864408, 0.2305084745762712, 0.21694915254237288, 0.2135593220338983, 0.21016949152542372, 0.21016949152542372, 0.21016949152542372, 0.20677966101694914, 0.19661016949152543, 0.19322033898305085, 0.18983050847457628, 0.18305084745762712, 0.17288135593220338, 0.1694915254237288, 0.1694915254237288, 0.16610169491525423, 0.16271186440677965, 0.26440677966101694, 0.34576271186440677, 0.3559322033898305, 0.3728813559322034, 0.43050847457627117, 0.5694915254237288, 0.43728813559322033, 0.3864406779661017, 0.3389830508474576, 0.16610169491525423, 0.8033898305084746, 0.8813559322033898, 0.9423728813559322, 0.911864406779661, 0.8271186440677966, 0.6847457627118644, 0.09152542372881356, 0.07457627118644068, 0.04745762711864407, 0.04406779661016949, 0.023728813559322035, 0.010169491525423728, 0.006779661016949152, 0.006779661016949152, 0.010169491525423728, 0.010169491525423728, 0.006779661016949152, 0.006779661016949152, 0.006779661016949152, 0.006779661016949152, 0.006779661016949152, 0.006779661016949152, 0.006779661016949152, 0.006779661016949152, 0.006779661016949152, 0.003389830508474576, 0.003389830508474576, 0.010169491525423728, 0.006779661016949152, 0.003389830508474576, 0.003389830508474576, 0.003389830508474576, 0.006779661016949152, 0.003389830508474576, 0.013559322033898305, 0.006779661016949152, 0.006779661016949152, 0.010169491525423728, 0.010169491525423728, 0.006779661016949152, 0.003389830508474576, 0.003389830508474576, 0.003389830508474576, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.02711864406779661, 0.023728813559322035, 0.020338983050847456, 0.735593220338983, 0.02711864406779661, 0.030508474576271188, 0.04067796610169491, 0.0711864406779661, 0.16271186440677965, 0.5423728813559322, 0.6237288135593221, 0.7898305084745763, 0.8576271186440678, 0.8847457627118644, 0.9016949152542373, 0.9491525423728814, 0.8949152542372881, 0.8745762711864407, 0.8101694915254237, 0.7762711864406779, 0.15593220338983052, 0.11186440677966102, 0.04745762711864407, 0.010169491525423728, 0.010169491525423728, 0.010169491525423728, 0.010169491525423728, 0.006779661016949152, 0.003389830508474576, 0.006779661016949152, 0.006779661016949152, 0.010169491525423728, 0.010169491525423728, 0.010169491525423728, 0.010169491525423728, 0.010169491525423728, 0.01694915254237288, 0.01694915254237288, 0.02711864406779661, 0.030508474576271188, 0.03728813559322034, 0.04067796610169491, 0.05084745762711865, 0.05423728813559322, 0.0576271186440678, 0.07457627118644068, 0.07796610169491526, 0.0847457627118644, 0.09152542372881356, 0.09152542372881356, 0.09152542372881356, 0.09152542372881356, 0.1016949152542373, 0.1016949152542373, 0.10847457627118644, 0.1016949152542373, 0.09830508474576272, 0.09491525423728814, 0.12542372881355932, 0.9220338983050848, 0.1016949152542373, 0.09830508474576272, 0.09830508474576272, 0.1016949152542373, 0.1016949152542373, 0.10508474576271186, 0.10508474576271186, 0.1016949152542373, 0.10508474576271186, 0.11186440677966102, 0.1152542372881356, 0.12542372881355932, 0.1288135593220339, 0.14576271186440679, 0.15593220338983052, 0.22033898305084745, 0.3016949152542373, 0.3593220338983051, 0.5322033898305085, 0.8067796610169492], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF2169.gap.json b/pfam_gap_rates/DUF2169.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..7e89e6f4849bd2cafe836c03618f0890cca96e7e
--- /dev/null
+++ b/pfam_gap_rates/DUF2169.gap.json
@@ -0,0 +1 @@
+{"family": "DUF2169", "n_seqs": 238, "length": 360, "gap_rates": [0.907563025210084, 0.5378151260504201, 0.46638655462184875, 0.3907563025210084, 0.2689075630252101, 0.16806722689075632, 0.14705882352941177, 0.14285714285714285, 0.13445378151260504, 0.13445378151260504, 0.13445378151260504, 0.13445378151260504, 0.13445378151260504, 0.13025210084033614, 0.13025210084033614, 0.13025210084033614, 0.13865546218487396, 0.14705882352941177, 0.13025210084033614, 0.15966386554621848, 0.2605042016806723, 0.453781512605042, 0.8991596638655462, 0.9411764705882353, 0.7815126050420168, 0.15966386554621848, 0.14705882352941177, 0.11764705882352941, 0.10504201680672269, 0.9495798319327731, 0.9285714285714286, 0.15126050420168066, 0.1092436974789916, 0.1134453781512605, 0.13025210084033614, 0.10504201680672269, 0.10084033613445378, 0.10504201680672269, 0.10084033613445378, 0.10084033613445378, 0.10084033613445378, 0.10084033613445378, 0.13025210084033614, 0.8781512605042017, 0.15126050420168066, 0.10084033613445378, 0.09663865546218488, 0.1092436974789916, 0.13025210084033614, 0.9495798319327731, 0.3949579831932773, 0.3235294117647059, 0.31092436974789917, 0.28991596638655465, 0.2815126050420168, 0.25210084033613445, 0.07563025210084033, 0.06302521008403361, 0.06302521008403361, 0.06302521008403361, 0.06302521008403361, 0.06302521008403361, 0.06302521008403361, 0.06302521008403361, 0.06302521008403361, 0.06302521008403361, 0.06302521008403361, 0.06302521008403361, 0.06302521008403361, 0.06302521008403361, 0.06302521008403361, 0.06302521008403361, 0.06722689075630252, 0.06722689075630252, 0.06722689075630252, 0.10084033613445378, 0.07983193277310924, 0.10504201680672269, 0.1134453781512605, 0.13865546218487396, 0.10084033613445378, 0.08403361344537816, 0.07142857142857142, 0.06722689075630252, 0.06722689075630252, 0.06722689075630252, 0.06722689075630252, 0.06722689075630252, 0.06722689075630252, 0.07142857142857142, 0.07142857142857142, 0.07563025210084033, 0.07563025210084033, 0.8571428571428571, 0.8697478991596639, 0.907563025210084, 0.8613445378151261, 0.8487394957983193, 0.09243697478991597, 0.08823529411764706, 0.08823529411764706, 0.09243697478991597, 0.09243697478991597, 0.09243697478991597, 0.09663865546218488, 0.10504201680672269, 0.09243697478991597, 0.09243697478991597, 0.09243697478991597, 0.10084033613445378, 0.15126050420168066, 0.15126050420168066, 0.12605042016806722, 0.14705882352941177, 0.13445378151260504, 0.13025210084033614, 0.9117647058823529, 0.5, 0.453781512605042, 0.4411764705882353, 0.31512605042016806, 0.1092436974789916, 0.1092436974789916, 0.10504201680672269, 0.10504201680672269, 0.10504201680672269, 0.10504201680672269, 0.10504201680672269, 0.10504201680672269, 0.10084033613445378, 0.10084033613445378, 0.10084033613445378, 0.10084033613445378, 0.10084033613445378, 0.10084033613445378, 0.10084033613445378, 0.10084033613445378, 0.10084033613445378, 0.10504201680672269, 0.10504201680672269, 0.680672268907563, 0.7394957983193278, 0.9033613445378151, 0.9117647058823529, 0.9201680672268907, 0.9201680672268907, 0.9243697478991597, 0.9327731092436975, 0.9327731092436975, 0.9369747899159664, 0.9369747899159664, 0.9453781512605042, 0.9411764705882353, 0.9369747899159664, 0.9327731092436975, 0.9327731092436975, 0.9285714285714286, 0.9201680672268907, 0.9201680672268907, 0.9159663865546218, 0.907563025210084, 0.8991596638655462, 0.726890756302521, 0.634453781512605, 0.6092436974789915, 0.5756302521008403, 0.5756302521008403, 0.5504201680672269, 0.5504201680672269, 0.5504201680672269, 0.5504201680672269, 0.21428571428571427, 0.10084033613445378, 0.10084033613445378, 0.10084033613445378, 0.10084033613445378, 0.10084033613445378, 0.10084033613445378, 0.10084033613445378, 0.10084033613445378, 0.10084033613445378, 0.10084033613445378, 0.10504201680672269, 0.10504201680672269, 0.1092436974789916, 0.1092436974789916, 0.20168067226890757, 0.19747899159663865, 0.19747899159663865, 0.21008403361344538, 0.20168067226890757, 0.27310924369747897, 0.6680672268907563, 0.9411764705882353, 0.9117647058823529, 0.5252100840336135, 0.1638655462184874, 0.12605042016806722, 0.1092436974789916, 0.1092436974789916, 0.10504201680672269, 0.10504201680672269, 0.10504201680672269, 0.11764705882352941, 0.1092436974789916, 0.9411764705882353, 0.1092436974789916, 0.1092436974789916, 0.14705882352941177, 0.14705882352941177, 0.14285714285714285, 0.18067226890756302, 0.17647058823529413, 0.9201680672268907, 0.9201680672268907, 0.9327731092436975, 0.9369747899159664, 0.9495798319327731, 0.9369747899159664, 0.9243697478991597, 0.9201680672268907, 0.9201680672268907, 0.19747899159663865, 0.19327731092436976, 0.15966386554621848, 0.15546218487394958, 0.13445378151260504, 0.08403361344537816, 0.07983193277310924, 0.07563025210084033, 0.06722689075630252, 0.06722689075630252, 0.06722689075630252, 0.06722689075630252, 0.06722689075630252, 0.06722689075630252, 0.06722689075630252, 0.06722689075630252, 0.06722689075630252, 0.06722689075630252, 0.07142857142857142, 0.07142857142857142, 0.07142857142857142, 0.07142857142857142, 0.07142857142857142, 0.07983193277310924, 0.07983193277310924, 0.9453781512605042, 0.09243697478991597, 0.08403361344537816, 0.08403361344537816, 0.08403361344537816, 0.07983193277310924, 0.07563025210084033, 0.9285714285714286, 0.9369747899159664, 0.9201680672268907, 0.11764705882352941, 0.1092436974789916, 0.10084033613445378, 0.10504201680672269, 0.09663865546218488, 0.15126050420168066, 0.8739495798319328, 0.9495798319327731, 0.865546218487395, 0.08823529411764706, 0.07983193277310924, 0.07563025210084033, 0.07142857142857142, 0.07142857142857142, 0.07563025210084033, 0.07563025210084033, 0.07142857142857142, 0.07142857142857142, 0.06722689075630252, 0.06722689075630252, 0.06722689075630252, 0.06722689075630252, 0.06722689075630252, 0.06722689075630252, 0.07142857142857142, 0.07142857142857142, 0.07142857142857142, 0.07142857142857142, 0.07142857142857142, 0.4957983193277311, 0.07983193277310924, 0.07142857142857142, 0.07563025210084033, 0.9117647058823529, 0.8949579831932774, 0.07142857142857142, 0.07142857142857142, 0.07142857142857142, 0.07142857142857142, 0.07142857142857142, 0.06722689075630252, 0.06722689075630252, 0.06722689075630252, 0.06722689075630252, 0.06722689075630252, 0.06722689075630252, 0.06722689075630252, 0.06722689075630252, 0.3949579831932773, 0.08403361344537816, 0.06722689075630252, 0.06722689075630252, 0.06722689075630252, 0.06722689075630252, 0.06722689075630252, 0.06722689075630252, 0.06722689075630252, 0.06722689075630252, 0.07563025210084033, 0.07142857142857142, 0.06722689075630252, 0.06722689075630252, 0.06722689075630252, 0.06722689075630252, 0.06722689075630252, 0.06722689075630252, 0.06722689075630252, 0.09243697478991597, 0.12605042016806722, 0.7647058823529411, 0.9159663865546218, 0.9411764705882353, 0.9369747899159664, 0.8571428571428571, 0.7436974789915967, 0.634453781512605, 0.18907563025210083, 0.07563025210084033, 0.07142857142857142, 0.07142857142857142, 0.06722689075630252, 0.06722689075630252, 0.06722689075630252, 0.06722689075630252, 0.06722689075630252, 0.06722689075630252, 0.06722689075630252, 0.06722689075630252, 0.06722689075630252, 0.06722689075630252, 0.06722689075630252, 0.06722689075630252, 0.06722689075630252, 0.07563025210084033, 0.07983193277310924, 0.07983193277310924, 0.07983193277310924, 0.07983193277310924, 0.08403361344537816, 0.08823529411764706, 0.09243697478991597, 0.09663865546218488, 0.19747899159663865], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF2201_N.gap.json b/pfam_gap_rates/DUF2201_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e751055d2cfa294357854928c76868111da100f9
--- /dev/null
+++ b/pfam_gap_rates/DUF2201_N.gap.json
@@ -0,0 +1 @@
+{"family": "DUF2201_N", "n_seqs": 319, "length": 367, "gap_rates": [0.8589341692789969, 0.799373040752351, 0.7304075235109718, 0.6614420062695925, 0.5956112852664577, 0.542319749216301, 0.5141065830721003, 0.46394984326018807, 0.44200626959247646, 0.4263322884012539, 0.40752351097178685, 0.3949843260188088, 0.3730407523510972, 0.3573667711598746, 0.34796238244514105, 0.34169278996865204, 0.31974921630094044, 0.3166144200626959, 0.3166144200626959, 0.30407523510971785, 0.2852664576802508, 0.27586206896551724, 0.26959247648902823, 0.26959247648902823, 0.25705329153605017, 0.25705329153605017, 0.25705329153605017, 0.25391849529780564, 0.2507836990595611, 0.9216300940438872, 0.8056426332288401, 0.2413793103448276, 0.2445141065830721, 0.219435736677116, 0.22570532915360503, 0.8275862068965517, 0.8934169278996865, 0.9373040752351097, 0.9498432601880877, 0.9216300940438872, 0.8808777429467085, 0.7523510971786834, 0.19122257053291536, 0.16927899686520376, 0.15047021943573669, 0.13793103448275862, 0.12539184952978055, 0.11598746081504702, 0.11285266457680251, 0.06896551724137931, 0.768025078369906, 0.05642633228840126, 0.05329153605015674, 0.05642633228840126, 0.05329153605015674, 0.05329153605015674, 0.05329153605015674, 0.05329153605015674, 0.06896551724137931, 0.1786833855799373, 0.109717868338558, 0.050156739811912224, 0.047021943573667714, 0.047021943573667714, 0.0438871473354232, 0.0438871473354232, 0.03761755485893417, 0.03761755485893417, 0.034482758620689655, 0.034482758620689655, 0.034482758620689655, 0.8620689655172413, 0.8746081504702194, 0.8589341692789969, 0.034482758620689655, 0.03134796238244514, 0.03134796238244514, 0.03134796238244514, 0.03134796238244514, 0.03134796238244514, 0.03134796238244514, 0.03134796238244514, 0.03134796238244514, 0.03134796238244514, 0.03134796238244514, 0.03134796238244514, 0.03134796238244514, 0.03134796238244514, 0.04075235109717868, 0.03134796238244514, 0.03134796238244514, 0.03761755485893417, 0.6802507836990596, 0.7210031347962382, 0.8746081504702194, 0.9153605015673981, 0.9373040752351097, 0.9341692789968652, 0.8840125391849529, 0.8432601880877743, 0.7115987460815048, 0.6144200626959248, 0.034482758620689655, 0.03134796238244514, 0.034482758620689655, 0.03134796238244514, 0.034482758620689655, 0.03134796238244514, 0.034482758620689655, 0.034482758620689655, 0.034482758620689655, 0.034482758620689655, 0.034482758620689655, 0.034482758620689655, 0.04075235109717868, 0.03761755485893417, 0.0438871473354232, 0.0438871473354232, 0.05642633228840126, 0.050156739811912224, 0.06269592476489028, 0.09404388714733543, 0.14733542319749215, 0.16927899686520376, 0.1755485893416928, 0.9498432601880877, 0.6959247648902821, 0.29780564263322884, 0.20689655172413793, 0.11912225705329153, 0.109717868338558, 0.09404388714733543, 0.09090909090909091, 0.09717868338557993, 0.38557993730407525, 0.3793103448275862, 0.38557993730407525, 0.39184952978056425, 0.5047021943573667, 0.47962382445141066, 0.31974921630094044, 0.5956112852664577, 0.7053291536050157, 0.7460815047021944, 0.8996865203761756, 0.9059561128526645, 0.799373040752351, 0.7178683385579937, 0.6677115987460815, 0.554858934169279, 0.1724137931034483, 0.15987460815047022, 0.14733542319749215, 0.13793103448275862, 0.13479623824451412, 0.12852664576802508, 0.13166144200626959, 0.12852664576802508, 0.13166144200626959, 0.13166144200626959, 0.13166144200626959, 0.13479623824451412, 0.13479623824451412, 0.13479623824451412, 0.13793103448275862, 0.13793103448275862, 0.6394984326018809, 0.64576802507837, 0.658307210031348, 0.6739811912225705, 0.6802507836990596, 0.6990595611285266, 0.7147335423197492, 0.7272727272727273, 0.7429467084639498, 0.7711598746081505, 0.780564263322884, 0.7931034482758621, 0.8338557993730408, 0.8495297805642633, 0.877742946708464, 0.890282131661442, 0.9090909090909091, 0.9216300940438872, 0.9278996865203761, 0.9310344827586207, 0.9341692789968652, 0.9404388714733543, 0.9435736677115988, 0.9435736677115988, 0.9404388714733543, 0.9310344827586207, 0.9278996865203761, 0.9247648902821317, 0.9153605015673981, 0.8996865203761756, 0.8871473354231975, 0.8683385579937304, 0.8495297805642633, 0.8119122257053292, 0.7931034482758621, 0.7774294670846394, 0.7586206896551724, 0.7304075235109718, 0.7178683385579937, 0.7115987460815048, 0.6865203761755486, 0.677115987460815, 0.664576802507837, 0.6520376175548589, 0.6394984326018809, 0.6363636363636364, 0.45768025078369906, 0.5705329153605015, 0.5642633228840125, 0.5203761755485894, 0.5015673981191222, 0.4702194357366771, 0.45768025078369906, 0.43573667711598746, 0.49843260188087773, 0.45141065830721006, 0.4043887147335423, 0.38557993730407525, 0.3730407523510972, 0.3667711598746082, 0.3605015673981191, 0.3322884012539185, 0.31347962382445144, 0.31347962382445144, 0.3166144200626959, 0.322884012539185, 0.31974921630094044, 0.32601880877742945, 0.3385579937304075, 0.3510971786833856, 0.8996865203761756, 0.9247648902821317, 0.9373040752351097, 0.9467084639498433, 0.9498432601880877, 0.9435736677115988, 0.9310344827586207, 0.9122257053291536, 0.8840125391849529, 0.5705329153605015, 0.5141065830721003, 0.47962382445141066, 0.445141065830721, 0.40752351097178685, 0.36363636363636365, 0.329153605015674, 0.2884012539184953, 0.28213166144200624, 0.27586206896551724, 0.28213166144200624, 0.27586206896551724, 0.27899686520376177, 0.28213166144200624, 0.2884012539184953, 0.27899686520376177, 0.2884012539184953, 0.30094043887147337, 0.30094043887147337, 0.3542319749216301, 0.47335423197492166, 0.4200626959247649, 0.39184952978056425, 0.3761755485893417, 0.36363636363636365, 0.3573667711598746, 0.335423197492163, 0.335423197492163, 0.3322884012539185, 0.4043887147335423, 0.36990595611285265, 0.36363636363636365, 0.43260188087774293, 0.40752351097178685, 0.5172413793103449, 0.9435736677115988, 0.8840125391849529, 0.3667711598746082, 0.34796238244514105, 0.335423197492163, 0.329153605015674, 0.335423197492163, 0.3385579937304075, 0.3448275862068966, 0.34796238244514105, 0.49216300940438873, 0.445141065830721, 0.41379310344827586, 0.4106583072100313, 0.34796238244514105, 0.3542319749216301, 0.34796238244514105, 0.3385579937304075, 0.335423197492163, 0.3448275862068966, 0.3448275862068966, 0.3448275862068966, 0.3448275862068966, 0.3448275862068966, 0.3448275862068966, 0.34796238244514105, 0.3510971786833856, 0.3542319749216301, 0.36363636363636365, 0.3761755485893417, 0.3761755485893417, 0.3793103448275862, 0.3667711598746082, 0.3605015673981191, 0.3605015673981191, 0.3605015673981191, 0.3605015673981191, 0.3605015673981191, 0.3605015673981191, 0.3605015673981191, 0.3605015673981191, 0.3605015673981191, 0.3605015673981191, 0.3605015673981191, 0.36363636363636365, 0.3730407523510972, 0.41379310344827586, 0.4263322884012539, 0.44200626959247646, 0.4482758620689655, 0.4608150470219436, 0.46394984326018807, 0.4670846394984326, 0.6990595611285266, 0.6206896551724138, 0.8620689655172413, 0.877742946708464, 0.8181818181818182, 0.47962382445141066, 0.47648902821316613, 0.47962382445141066, 0.48589341692789967, 0.47962382445141066, 0.47962382445141066, 0.48589341692789967, 0.4890282131661442, 0.4890282131661442, 0.49843260188087773, 0.5203761755485894, 0.780564263322884, 0.7210031347962382, 0.9467084639498433, 0.9498432601880877, 0.9404388714733543, 0.9153605015673981, 0.9247648902821317, 0.9216300940438872, 0.877742946708464, 0.8463949843260188, 0.7429467084639498, 0.7460815047021944, 0.7492163009404389, 0.7492163009404389, 0.7523510971786834, 0.7554858934169278, 0.7586206896551724, 0.8181818181818182], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF2231.gap.json b/pfam_gap_rates/DUF2231.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..042c94f78958e31bf2f0c90be39246b647198113
--- /dev/null
+++ b/pfam_gap_rates/DUF2231.gap.json
@@ -0,0 +1 @@
+{"family": "DUF2231", "n_seqs": 302, "length": 118, "gap_rates": [0.49337748344370863, 0.36423841059602646, 0.2847682119205298, 0.2052980132450331, 0.16887417218543047, 0.152317880794702, 0.152317880794702, 0.09602649006622517, 0.039735099337748346, 0.029801324503311258, 0.026490066225165563, 0.026490066225165563, 0.026490066225165563, 0.016556291390728478, 0.016556291390728478, 0.016556291390728478, 0.016556291390728478, 0.009933774834437087, 0.009933774834437087, 0.009933774834437087, 0.006622516556291391, 0.006622516556291391, 0.006622516556291391, 0.009933774834437087, 0.013245033112582781, 0.013245033112582781, 0.013245033112582781, 0.013245033112582781, 0.009933774834437087, 0.016556291390728478, 0.39403973509933776, 0.09602649006622517, 0.019867549668874173, 0.013245033112582781, 0.7980132450331126, 0.8211920529801324, 0.8576158940397351, 0.8609271523178808, 0.8576158940397351, 0.847682119205298, 0.8079470198675497, 0.7880794701986755, 0.013245033112582781, 0.006622516556291391, 0.006622516556291391, 0.006622516556291391, 0.006622516556291391, 0.006622516556291391, 0.006622516556291391, 0.0033112582781456954, 0.006622516556291391, 0.006622516556291391, 0.009933774834437087, 0.006622516556291391, 0.0033112582781456954, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0033112582781456954, 0.009933774834437087, 0.609271523178808, 0.5960264900662252, 0.5562913907284768, 0.5364238410596026, 0.8377483443708609, 0.8609271523178808, 0.8543046357615894, 0.8278145695364238, 0.03642384105960265, 0.03642384105960265, 0.016556291390728478, 0.009933774834437087, 0.009933774834437087, 0.019867549668874173, 0.016556291390728478, 0.019867549668874173, 0.016556291390728478, 0.019867549668874173, 0.9072847682119205, 0.6192052980132451, 0.10927152317880795, 0.08940397350993377, 0.076158940397351, 0.013245033112582781, 0.016556291390728478, 0.016556291390728478, 0.019867549668874173, 0.019867549668874173, 0.013245033112582781, 0.013245033112582781, 0.013245033112582781, 0.016556291390728478, 0.016556291390728478, 0.016556291390728478, 0.013245033112582781, 0.013245033112582781, 0.013245033112582781, 0.013245033112582781, 0.013245033112582781, 0.019867549668874173, 0.019867549668874173, 0.019867549668874173, 0.026490066225165563, 0.029801324503311258, 0.033112582781456956, 0.04304635761589404, 0.046357615894039736, 0.046357615894039736, 0.06291390728476821, 0.09271523178807947, 0.12251655629139073, 0.1390728476821192, 0.17218543046357615, 0.31125827814569534], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF2274.gap.json b/pfam_gap_rates/DUF2274.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..eb4cd92414d1d48cbad2fec26d3642bd6d4958b9
--- /dev/null
+++ b/pfam_gap_rates/DUF2274.gap.json
@@ -0,0 +1 @@
+{"family": "DUF2274", "n_seqs": 124, "length": 71, "gap_rates": [0.25806451612903225, 0.12903225806451613, 0.08064516129032258, 0.04032258064516129, 0.03225806451612903, 0.024193548387096774, 0.024193548387096774, 0.024193548387096774, 0.024193548387096774, 0.024193548387096774, 0.024193548387096774, 0.016129032258064516, 0.016129032258064516, 0.016129032258064516, 0.016129032258064516, 0.016129032258064516, 0.016129032258064516, 0.016129032258064516, 0.016129032258064516, 0.016129032258064516, 0.016129032258064516, 0.024193548387096774, 0.024193548387096774, 0.024193548387096774, 0.016129032258064516, 0.016129032258064516, 0.016129032258064516, 0.016129032258064516, 0.008064516129032258, 0.0, 0.0, 0.008064516129032258, 0.008064516129032258, 0.008064516129032258, 0.008064516129032258, 0.008064516129032258, 0.008064516129032258, 0.04032258064516129, 0.008064516129032258, 0.008064516129032258, 0.016129032258064516, 0.016129032258064516, 0.016129032258064516, 0.04032258064516129, 0.9193548387096774, 0.5080645161290323, 0.016129032258064516, 0.016129032258064516, 0.016129032258064516, 0.016129032258064516, 0.016129032258064516, 0.016129032258064516, 0.016129032258064516, 0.016129032258064516, 0.016129032258064516, 0.024193548387096774, 0.024193548387096774, 0.024193548387096774, 0.024193548387096774, 0.024193548387096774, 0.03225806451612903, 0.03225806451612903, 0.03225806451612903, 0.03225806451612903, 0.03225806451612903, 0.04032258064516129, 0.04032258064516129, 0.04032258064516129, 0.0967741935483871, 0.1774193548387097, 0.3548387096774194], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF2282.gap.json b/pfam_gap_rates/DUF2282.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..1530386d684a05e9c8dd09704f62b429f00455ab
--- /dev/null
+++ b/pfam_gap_rates/DUF2282.gap.json
@@ -0,0 +1 @@
+{"family": "DUF2282", "n_seqs": 194, "length": 57, "gap_rates": [0.31443298969072164, 0.030927835051546393, 0.010309278350515464, 0.010309278350515464, 0.010309278350515464, 0.010309278350515464, 0.010309278350515464, 0.010309278350515464, 0.010309278350515464, 0.010309278350515464, 0.010309278350515464, 0.005154639175257732, 0.005154639175257732, 0.005154639175257732, 0.005154639175257732, 0.005154639175257732, 0.005154639175257732, 0.005154639175257732, 0.005154639175257732, 0.3247422680412371, 0.3247422680412371, 0.5154639175257731, 0.015463917525773196, 0.005154639175257732, 0.005154639175257732, 0.005154639175257732, 0.005154639175257732, 0.005154639175257732, 0.005154639175257732, 0.0, 0.015463917525773196, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.005154639175257732, 0.005154639175257732, 0.005154639175257732, 0.005154639175257732, 0.005154639175257732, 0.020618556701030927, 0.041237113402061855, 0.19072164948453607, 0.7835051546391752, 0.8195876288659794, 0.8195876288659794, 0.7319587628865979, 0.3402061855670103, 0.5721649484536082, 0.8556701030927835], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF2312.gap.json b/pfam_gap_rates/DUF2312.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ec7dfef77992a799cb29b25631682fb460447530
--- /dev/null
+++ b/pfam_gap_rates/DUF2312.gap.json
@@ -0,0 +1 @@
+{"family": "DUF2312", "n_seqs": 262, "length": 72, "gap_rates": [0.31679389312977096, 0.09923664122137404, 0.026717557251908396, 0.019083969465648856, 0.011450381679389313, 0.011450381679389313, 0.011450381679389313, 0.011450381679389313, 0.011450381679389313, 0.007633587786259542, 0.007633587786259542, 0.007633587786259542, 0.007633587786259542, 0.007633587786259542, 0.007633587786259542, 0.007633587786259542, 0.007633587786259542, 0.007633587786259542, 0.007633587786259542, 0.007633587786259542, 0.007633587786259542, 0.007633587786259542, 0.007633587786259542, 0.007633587786259542, 0.007633587786259542, 0.007633587786259542, 0.007633587786259542, 0.007633587786259542, 0.007633587786259542, 0.007633587786259542, 0.007633587786259542, 0.007633587786259542, 0.007633587786259542, 0.007633587786259542, 0.007633587786259542, 0.007633587786259542, 0.007633587786259542, 0.011450381679389313, 0.015267175572519083, 0.015267175572519083, 0.015267175572519083, 0.015267175572519083, 0.007633587786259542, 0.007633587786259542, 0.007633587786259542, 0.007633587786259542, 0.007633587786259542, 0.015267175572519083, 0.015267175572519083, 0.015267175572519083, 0.015267175572519083, 0.019083969465648856, 0.015267175572519083, 0.019083969465648856, 0.019083969465648856, 0.019083969465648856, 0.022900763358778626, 0.019083969465648856, 0.019083969465648856, 0.019083969465648856, 0.019083969465648856, 0.019083969465648856, 0.019083969465648856, 0.019083969465648856, 0.019083969465648856, 0.019083969465648856, 0.019083969465648856, 0.019083969465648856, 0.022900763358778626, 0.026717557251908396, 0.03435114503816794, 0.0916030534351145], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF2318.gap.json b/pfam_gap_rates/DUF2318.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..0867b85f6702af96482c91d5be9a18de7b795881
--- /dev/null
+++ b/pfam_gap_rates/DUF2318.gap.json
@@ -0,0 +1 @@
+{"family": "DUF2318", "n_seqs": 130, "length": 112, "gap_rates": [0.4461538461538462, 0.2923076923076923, 0.24615384615384617, 0.11538461538461539, 0.08461538461538462, 0.08461538461538462, 0.07692307692307693, 0.07692307692307693, 0.07692307692307693, 0.07692307692307693, 0.06923076923076923, 0.06153846153846154, 0.06923076923076923, 0.06153846153846154, 0.46153846153846156, 0.046153846153846156, 0.03076923076923077, 0.023076923076923078, 0.015384615384615385, 0.015384615384615385, 0.015384615384615385, 0.015384615384615385, 0.015384615384615385, 0.015384615384615385, 0.015384615384615385, 0.03076923076923077, 0.015384615384615385, 0.015384615384615385, 0.015384615384615385, 0.9384615384615385, 0.015384615384615385, 0.015384615384615385, 0.015384615384615385, 0.8923076923076924, 0.8923076923076924, 0.015384615384615385, 0.015384615384615385, 0.015384615384615385, 0.015384615384615385, 0.015384615384615385, 0.015384615384615385, 0.015384615384615385, 0.007692307692307693, 0.007692307692307693, 0.6, 0.6, 0.007692307692307693, 0.007692307692307693, 0.007692307692307693, 0.007692307692307693, 0.007692307692307693, 0.007692307692307693, 0.8846153846153846, 0.007692307692307693, 0.007692307692307693, 0.015384615384615385, 0.015384615384615385, 0.023076923076923078, 0.023076923076923078, 0.023076923076923078, 0.023076923076923078, 0.023076923076923078, 0.023076923076923078, 0.023076923076923078, 0.015384615384615385, 0.015384615384615385, 0.015384615384615385, 0.015384615384615385, 0.015384615384615385, 0.015384615384615385, 0.015384615384615385, 0.015384615384615385, 0.015384615384615385, 0.015384615384615385, 0.49230769230769234, 0.9461538461538461, 0.015384615384615385, 0.015384615384615385, 0.015384615384615385, 0.015384615384615385, 0.015384615384615385, 0.015384615384615385, 0.015384615384615385, 0.015384615384615385, 0.015384615384615385, 0.015384615384615385, 0.7538461538461538, 0.7846153846153846, 0.7076923076923077, 0.015384615384615385, 0.015384615384615385, 0.015384615384615385, 0.015384615384615385, 0.015384615384615385, 0.015384615384615385, 0.015384615384615385, 0.023076923076923078, 0.023076923076923078, 0.023076923076923078, 0.023076923076923078, 0.023076923076923078, 0.023076923076923078, 0.023076923076923078, 0.03076923076923077, 0.03076923076923077, 0.03076923076923077, 0.038461538461538464, 0.046153846153846156, 0.08461538461538462, 0.1, 0.18461538461538463, 0.2], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF236.gap.json b/pfam_gap_rates/DUF236.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..3106eac22041133a5c3d4f2129b175868e54eb47
--- /dev/null
+++ b/pfam_gap_rates/DUF236.gap.json
@@ -0,0 +1 @@
+{"family": "DUF236", "n_seqs": 423, "length": 36, "gap_rates": [0.25295508274231676, 0.1773049645390071, 0.13002364066193853, 0.10874704491725769, 0.10874704491725769, 0.09692671394799054, 0.8439716312056738, 0.9456264775413712, 0.9054373522458629, 0.5177304964539007, 0.08274231678486997, 0.08274231678486997, 0.06619385342789598, 0.04964539007092199, 0.037825059101654845, 0.03309692671394799, 0.028368794326241134, 0.030732860520094562, 0.02364066193853428, 0.02364066193853428, 0.02364066193853428, 0.014184397163120567, 0.018912529550827423, 0.02127659574468085, 0.026004728132387706, 0.028368794326241134, 0.028368794326241134, 0.04018912529550828, 0.0425531914893617, 0.6950354609929078, 0.05200945626477541, 0.04728132387706856, 0.04491725768321513, 0.0591016548463357, 0.12056737588652482, 0.2127659574468085], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF2365.gap.json b/pfam_gap_rates/DUF2365.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..8933ce2af65a80543e304faf2480b404a65b46f2
--- /dev/null
+++ b/pfam_gap_rates/DUF2365.gap.json
@@ -0,0 +1 @@
+{"family": "DUF2365", "n_seqs": 119, "length": 176, "gap_rates": [0.6470588235294118, 0.6302521008403361, 0.5882352941176471, 0.5546218487394958, 0.5546218487394958, 0.5546218487394958, 0.5462184873949579, 0.5462184873949579, 0.5462184873949579, 0.5462184873949579, 0.5462184873949579, 0.5378151260504201, 0.5378151260504201, 0.5378151260504201, 0.5378151260504201, 0.5378151260504201, 0.5378151260504201, 0.5294117647058824, 0.5294117647058824, 0.5210084033613446, 0.5210084033613446, 0.6050420168067226, 0.6134453781512605, 0.6134453781512605, 0.6638655462184874, 0.6638655462184874, 0.7563025210084033, 0.9159663865546218, 0.7142857142857143, 0.8235294117647058, 0.9495798319327731, 0.9495798319327731, 0.9159663865546218, 0.8151260504201681, 0.6386554621848739, 0.5714285714285714, 0.5210084033613446, 0.5042016806722689, 0.4957983193277311, 0.4789915966386555, 0.48739495798319327, 0.48739495798319327, 0.46218487394957986, 0.453781512605042, 0.47058823529411764, 0.48739495798319327, 0.6554621848739496, 0.6050420168067226, 0.8487394957983193, 0.8739495798319328, 0.8991596638655462, 0.9159663865546218, 0.9411764705882353, 0.9411764705882353, 0.9495798319327731, 0.9411764705882353, 0.9327731092436975, 0.907563025210084, 0.8907563025210085, 0.8571428571428571, 0.8319327731092437, 0.5714285714285714, 0.5462184873949579, 0.5210084033613446, 0.5042016806722689, 0.453781512605042, 0.4117647058823529, 0.35294117647058826, 0.9327731092436975, 0.9495798319327731, 0.9495798319327731, 0.9327731092436975, 0.9159663865546218, 0.33613445378151263, 0.2857142857142857, 0.2689075630252101, 0.226890756302521, 0.226890756302521, 0.16806722689075632, 0.09243697478991597, 0.07563025210084033, 0.07563025210084033, 0.05042016806722689, 0.05042016806722689, 0.05042016806722689, 0.04201680672268908, 0.04201680672268908, 0.04201680672268908, 0.04201680672268908, 0.03361344537815126, 0.03361344537815126, 0.03361344537815126, 0.03361344537815126, 0.03361344537815126, 0.03361344537815126, 0.04201680672268908, 0.04201680672268908, 0.04201680672268908, 0.04201680672268908, 0.04201680672268908, 0.04201680672268908, 0.04201680672268908, 0.03361344537815126, 0.04201680672268908, 0.04201680672268908, 0.04201680672268908, 0.03361344537815126, 0.03361344537815126, 0.03361344537815126, 0.04201680672268908, 0.05042016806722689, 0.05042016806722689, 0.05042016806722689, 0.05042016806722689, 0.05042016806722689, 0.05042016806722689, 0.05042016806722689, 0.04201680672268908, 0.03361344537815126, 0.03361344537815126, 0.03361344537815126, 0.03361344537815126, 0.03361344537815126, 0.04201680672268908, 0.04201680672268908, 0.04201680672268908, 0.04201680672268908, 0.05042016806722689, 0.05042016806722689, 0.05042016806722689, 0.05042016806722689, 0.05042016806722689, 0.9327731092436975, 0.05042016806722689, 0.05042016806722689, 0.05042016806722689, 0.05042016806722689, 0.05042016806722689, 0.05042016806722689, 0.07563025210084033, 0.15126050420168066, 0.08403361344537816, 0.058823529411764705, 0.06722689075630252, 0.06722689075630252, 0.07563025210084033, 0.07563025210084033, 0.07563025210084033, 0.07563025210084033, 0.07563025210084033, 0.07563025210084033, 0.07563025210084033, 0.07563025210084033, 0.07563025210084033, 0.07563025210084033, 0.07563025210084033, 0.07563025210084033, 0.07563025210084033, 0.07563025210084033, 0.07563025210084033, 0.07563025210084033, 0.09243697478991597, 0.10084033613445378, 0.13445378151260504, 0.16806722689075632, 0.16806722689075632, 0.16806722689075632, 0.16806722689075632, 0.16806722689075632, 0.16806722689075632, 0.16806722689075632, 0.16806722689075632, 0.16806722689075632, 0.16806722689075632, 0.17647058823529413, 0.3445378151260504], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF2383.gap.json b/pfam_gap_rates/DUF2383.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..45a1d663b2552942ac9619848e3099f68202f3ac
--- /dev/null
+++ b/pfam_gap_rates/DUF2383.gap.json
@@ -0,0 +1 @@
+{"family": "DUF2383", "n_seqs": 311, "length": 112, "gap_rates": [0.887459807073955, 0.4565916398713826, 0.22186495176848875, 0.15112540192926044, 0.12218649517684887, 0.04180064308681672, 0.02572347266881029, 0.01607717041800643, 0.00964630225080386, 0.00964630225080386, 0.00964630225080386, 0.00964630225080386, 0.00964630225080386, 0.00964630225080386, 0.003215434083601286, 0.003215434083601286, 0.003215434083601286, 0.003215434083601286, 0.003215434083601286, 0.003215434083601286, 0.003215434083601286, 0.003215434083601286, 0.003215434083601286, 0.003215434083601286, 0.003215434083601286, 0.003215434083601286, 0.003215434083601286, 0.003215434083601286, 0.03858520900321544, 0.00964630225080386, 0.006430868167202572, 0.006430868167202572, 0.003215434083601286, 0.003215434083601286, 0.003215434083601286, 0.003215434083601286, 0.003215434083601286, 0.006430868167202572, 0.006430868167202572, 0.006430868167202572, 0.006430868167202572, 0.006430868167202572, 0.006430868167202572, 0.006430868167202572, 0.006430868167202572, 0.006430868167202572, 0.006430868167202572, 0.006430868167202572, 0.006430868167202572, 0.006430868167202572, 0.006430868167202572, 0.006430868167202572, 0.006430868167202572, 0.006430868167202572, 0.006430868167202572, 0.006430868167202572, 0.012861736334405145, 0.022508038585209004, 0.01929260450160772, 0.022508038585209004, 0.028938906752411574, 0.04180064308681672, 0.04501607717041801, 0.05144694533762058, 0.9356913183279743, 0.04823151125401929, 0.028938906752411574, 0.028938906752411574, 0.028938906752411574, 0.028938906752411574, 0.03215434083601286, 0.03215434083601286, 0.03215434083601286, 0.028938906752411574, 0.03215434083601286, 0.03215434083601286, 0.028938906752411574, 0.028938906752411574, 0.028938906752411574, 0.03536977491961415, 0.03215434083601286, 0.07395498392282958, 0.06752411575562701, 0.04823151125401929, 0.03536977491961415, 0.03215434083601286, 0.0932475884244373, 0.14790996784565916, 0.21221864951768488, 0.24437299035369775, 0.04823151125401929, 0.04823151125401929, 0.05144694533762058, 0.05144694533762058, 0.06109324758842444, 0.06430868167202572, 0.06430868167202572, 0.06752411575562701, 0.0707395498392283, 0.07395498392282958, 0.07717041800643087, 0.0932475884244373, 0.09967845659163987, 0.10610932475884244, 0.10932475884244373, 0.11254019292604502, 0.1189710610932476, 0.13183279742765272, 0.15112540192926044, 0.1832797427652733, 0.29260450160771706, 0.7717041800643086], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF2437.gap.json b/pfam_gap_rates/DUF2437.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..92ec01b628ce0c41bd87c3f96bd7f22f553043c6
--- /dev/null
+++ b/pfam_gap_rates/DUF2437.gap.json
@@ -0,0 +1 @@
+{"family": "DUF2437", "n_seqs": 455, "length": 73, "gap_rates": [0.24615384615384617, 0.07692307692307693, 0.024175824175824177, 0.024175824175824177, 0.01978021978021978, 0.01978021978021978, 0.8967032967032967, 0.01978021978021978, 0.02197802197802198, 0.02197802197802198, 0.02197802197802198, 0.8923076923076924, 0.026373626373626374, 0.024175824175824177, 0.017582417582417582, 0.01098901098901099, 0.008791208791208791, 0.008791208791208791, 0.008791208791208791, 0.006593406593406593, 0.5846153846153846, 0.6703296703296703, 0.8373626373626374, 0.9164835164835164, 0.8725274725274725, 0.8131868131868132, 0.6637362637362637, 0.4747252747252747, 0.006593406593406593, 0.01098901098901099, 0.002197802197802198, 0.002197802197802198, 0.0, 0.0, 0.0, 0.0, 0.0, 0.9274725274725275, 0.9296703296703297, 0.9362637362637363, 0.9428571428571428, 0.945054945054945, 0.9472527472527472, 0.9428571428571428, 0.9406593406593406, 0.9340659340659341, 0.9274725274725275, 0.9274725274725275, 0.04395604395604396, 0.04835164835164835, 0.03076923076923077, 0.9098901098901099, 0.6241758241758242, 0.015384615384615385, 0.015384615384615385, 0.013186813186813187, 0.013186813186813187, 0.015384615384615385, 0.015384615384615385, 0.013186813186813187, 0.01098901098901099, 0.013186813186813187, 0.013186813186813187, 0.013186813186813187, 0.006593406593406593, 0.008791208791208791, 0.008791208791208791, 0.004395604395604396, 0.01098901098901099, 0.013186813186813187, 0.017582417582417582, 0.01978021978021978, 0.026373626373626374], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF2451.gap.json b/pfam_gap_rates/DUF2451.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..7d4638d72744fc7af7cd9a7c7b139441bca04d4d
--- /dev/null
+++ b/pfam_gap_rates/DUF2451.gap.json
@@ -0,0 +1 @@
+{"family": "DUF2451", "n_seqs": 184, "length": 246, "gap_rates": [0.5380434782608695, 0.33695652173913043, 0.2826086956521739, 0.22826086956521738, 0.21195652173913043, 0.20108695652173914, 0.20108695652173914, 0.20108695652173914, 0.20108695652173914, 0.20108695652173914, 0.20108695652173914, 0.20108695652173914, 0.20108695652173914, 0.20108695652173914, 0.1793478260869565, 0.1793478260869565, 0.1793478260869565, 0.1793478260869565, 0.17391304347826086, 0.17391304347826086, 0.17391304347826086, 0.17391304347826086, 0.17391304347826086, 0.16847826086956522, 0.16847826086956522, 0.16847826086956522, 0.16304347826086957, 0.16304347826086957, 0.17391304347826086, 0.16847826086956522, 0.16847826086956522, 0.16847826086956522, 0.1956521739130435, 0.18478260869565216, 0.19021739130434784, 0.9456521739130435, 0.8967391304347826, 0.21195652173913043, 0.1956521739130435, 0.18478260869565216, 0.16847826086956522, 0.15217391304347827, 0.15217391304347827, 0.15217391304347827, 0.15760869565217392, 0.15760869565217392, 0.19021739130434784, 0.1358695652173913, 0.14130434782608695, 0.14130434782608695, 0.14130434782608695, 0.14130434782608695, 0.14130434782608695, 0.14130434782608695, 0.14130434782608695, 0.14130434782608695, 0.14130434782608695, 0.14130434782608695, 0.14130434782608695, 0.14130434782608695, 0.14130434782608695, 0.14130434782608695, 0.1358695652173913, 0.1358695652173913, 0.14130434782608695, 0.14130434782608695, 0.14130434782608695, 0.1358695652173913, 0.13043478260869565, 0.125, 0.125, 0.11956521739130435, 0.9456521739130435, 0.9456521739130435, 0.11956521739130435, 0.11413043478260869, 0.10869565217391304, 0.10869565217391304, 0.10869565217391304, 0.10869565217391304, 0.10869565217391304, 0.10869565217391304, 0.10869565217391304, 0.10869565217391304, 0.11413043478260869, 0.11413043478260869, 0.11413043478260869, 0.10326086956521739, 0.09782608695652174, 0.10326086956521739, 0.11413043478260869, 0.10326086956521739, 0.09239130434782608, 0.08695652173913043, 0.08152173913043478, 0.08152173913043478, 0.07608695652173914, 0.07608695652173914, 0.08152173913043478, 0.08152173913043478, 0.07608695652173914, 0.07608695652173914, 0.06521739130434782, 0.06521739130434782, 0.07065217391304347, 0.07065217391304347, 0.07608695652173914, 0.07608695652173914, 0.07608695652173914, 0.07608695652173914, 0.07608695652173914, 0.07065217391304347, 0.07608695652173914, 0.07608695652173914, 0.3804347826086957, 0.3804347826086957, 0.391304347826087, 0.375, 0.17391304347826086, 0.15217391304347827, 0.09782608695652174, 0.09239130434782608, 0.09239130434782608, 0.09239130434782608, 0.09239130434782608, 0.14673913043478262, 0.1358695652173913, 0.11413043478260869, 0.08152173913043478, 0.08152173913043478, 0.08152173913043478, 0.08695652173913043, 0.08152173913043478, 0.08152173913043478, 0.08695652173913043, 0.08695652173913043, 0.08695652173913043, 0.08695652173913043, 0.07608695652173914, 0.07608695652173914, 0.07608695652173914, 0.08152173913043478, 0.07608695652173914, 0.07608695652173914, 0.09782608695652174, 0.09782608695652174, 0.09782608695652174, 0.9130434782608695, 0.09782608695652174, 0.09782608695652174, 0.09782608695652174, 0.09782608695652174, 0.09782608695652174, 0.09782608695652174, 0.09782608695652174, 0.09782608695652174, 0.09782608695652174, 0.09782608695652174, 0.09782608695652174, 0.09782608695652174, 0.10326086956521739, 0.10326086956521739, 0.10326086956521739, 0.10326086956521739, 0.10326086956521739, 0.10326086956521739, 0.10326086956521739, 0.10869565217391304, 0.10869565217391304, 0.10869565217391304, 0.10869565217391304, 0.10869565217391304, 0.10869565217391304, 0.10869565217391304, 0.11413043478260869, 0.11956521739130435, 0.1358695652173913, 0.13043478260869565, 0.15760869565217392, 0.14673913043478262, 0.13043478260869565, 0.125, 0.13043478260869565, 0.13043478260869565, 0.13043478260869565, 0.13043478260869565, 0.13043478260869565, 0.1358695652173913, 0.1358695652173913, 0.1358695652173913, 0.1358695652173913, 0.1358695652173913, 0.1358695652173913, 0.1358695652173913, 0.1358695652173913, 0.14130434782608695, 0.9239130434782609, 0.14130434782608695, 0.14130434782608695, 0.14130434782608695, 0.14130434782608695, 0.14130434782608695, 0.14130434782608695, 0.14130434782608695, 0.14673913043478262, 0.14673913043478262, 0.14673913043478262, 0.14673913043478262, 0.9239130434782609, 0.7445652173913043, 0.1793478260869565, 0.18478260869565216, 0.18478260869565216, 0.20108695652173914, 0.21195652173913043, 0.22826086956521738, 0.21195652173913043, 0.21195652173913043, 0.21195652173913043, 0.21195652173913043, 0.21195652173913043, 0.21195652173913043, 0.2391304347826087, 0.2391304347826087, 0.2391304347826087, 0.8260869565217391, 0.8043478260869565, 0.266304347826087, 0.27717391304347827, 0.29891304347826086, 0.7880434782608695, 0.7989130434782609, 0.7880434782608695, 0.2717391304347826, 0.2608695652173913, 0.2554347826086957, 0.2554347826086957, 0.266304347826087, 0.2717391304347826, 0.28804347826086957, 0.29347826086956524, 0.31521739130434784, 0.31521739130434784, 0.3423913043478261, 0.3695652173913043, 0.5380434782608695], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF2469.gap.json b/pfam_gap_rates/DUF2469.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..5528875b8096d31d478fd026ad80765dcde5e736
--- /dev/null
+++ b/pfam_gap_rates/DUF2469.gap.json
@@ -0,0 +1 @@
+{"family": "DUF2469", "n_seqs": 220, "length": 101, "gap_rates": [0.06818181818181818, 0.045454545454545456, 0.031818181818181815, 0.02727272727272727, 0.004545454545454545, 0.004545454545454545, 0.004545454545454545, 0.004545454545454545, 0.004545454545454545, 0.004545454545454545, 0.004545454545454545, 0.004545454545454545, 0.004545454545454545, 0.004545454545454545, 0.004545454545454545, 0.004545454545454545, 0.004545454545454545, 0.004545454545454545, 0.004545454545454545, 0.004545454545454545, 0.004545454545454545, 0.004545454545454545, 0.004545454545454545, 0.004545454545454545, 0.004545454545454545, 0.004545454545454545, 0.004545454545454545, 0.004545454545454545, 0.004545454545454545, 0.004545454545454545, 0.004545454545454545, 0.004545454545454545, 0.004545454545454545, 0.004545454545454545, 0.004545454545454545, 0.004545454545454545, 0.004545454545454545, 0.004545454545454545, 0.004545454545454545, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.9181818181818182, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.004545454545454545, 0.00909090909090909, 0.04090909090909091, 0.06818181818181818, 0.13636363636363635, 0.1590909090909091], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF2507.gap.json b/pfam_gap_rates/DUF2507.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..9a12c58cacf10fcdae314adc448b021450b60bb7
--- /dev/null
+++ b/pfam_gap_rates/DUF2507.gap.json
@@ -0,0 +1 @@
+{"family": "DUF2507", "n_seqs": 138, "length": 125, "gap_rates": [0.7681159420289855, 0.21014492753623187, 0.10144927536231885, 0.06521739130434782, 0.050724637681159424, 0.021739130434782608, 0.014492753623188406, 0.007246376811594203, 0.007246376811594203, 0.007246376811594203, 0.007246376811594203, 0.007246376811594203, 0.007246376811594203, 0.007246376811594203, 0.007246376811594203, 0.007246376811594203, 0.007246376811594203, 0.0, 0.0, 0.10144927536231885, 0.007246376811594203, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.007246376811594203, 0.0, 0.014492753623188406, 0.007246376811594203, 0.028985507246376812, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.007246376811594203, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.007246376811594203, 0.007246376811594203, 0.007246376811594203, 0.007246376811594203, 0.007246376811594203, 0.014492753623188406, 0.014492753623188406, 0.007246376811594203, 0.007246376811594203, 0.007246376811594203, 0.021739130434782608, 0.021739130434782608, 0.014492753623188406, 0.007246376811594203, 0.007246376811594203, 0.021739130434782608, 0.07971014492753623, 0.13043478260869565, 0.13768115942028986, 0.2246376811594203, 0.9130434782608695, 0.050724637681159424, 0.028985507246376812, 0.028985507246376812, 0.021739130434782608, 0.007246376811594203, 0.007246376811594203, 0.007246376811594203, 0.007246376811594203, 0.007246376811594203, 0.007246376811594203, 0.007246376811594203, 0.007246376811594203, 0.014492753623188406, 0.014492753623188406, 0.014492753623188406, 0.014492753623188406, 0.014492753623188406, 0.014492753623188406, 0.014492753623188406, 0.014492753623188406, 0.014492753623188406, 0.014492753623188406, 0.014492753623188406, 0.014492753623188406, 0.021739130434782608, 0.021739130434782608, 0.021739130434782608, 0.021739130434782608, 0.021739130434782608, 0.028985507246376812, 0.028985507246376812, 0.036231884057971016, 0.036231884057971016, 0.050724637681159424, 0.057971014492753624, 0.927536231884058, 0.34782608695652173, 0.21014492753623187, 0.07246376811594203, 0.07246376811594203, 0.07971014492753623, 0.12318840579710146, 0.18840579710144928, 0.5652173913043478], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF262.gap.json b/pfam_gap_rates/DUF262.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..86ba0e17a2ccb33b3254e487ded5bf6d22d89942
--- /dev/null
+++ b/pfam_gap_rates/DUF262.gap.json
@@ -0,0 +1 @@
+{"family": "DUF262", "n_seqs": 1453, "length": 319, "gap_rates": [0.8651066758430833, 0.690984170681349, 0.5574673090158293, 0.46455609084652444, 0.4198210598761184, 0.38540949759119064, 0.3537508602890571, 0.3344803854094976, 0.3262216104611149, 0.40949759119064005, 0.5141087405368203, 0.8465244322092222, 0.6235375086028906, 0.1520991052993806, 0.08396421197522368, 0.07501720578114246, 0.07019958706125258, 0.05230557467309016, 0.042670337233310394, 0.040605643496214726, 0.03716448726772195, 0.034411562284927734, 0.03372333103922918, 0.03303509979353063, 0.031658637302133516, 0.949070887818307, 0.03234686854783207, 0.031658637302133516, 0.030970406056434963, 0.029593943565037854, 0.028905712319339298, 0.02752924982794219, 0.02752924982794219, 0.02752924982794219, 0.02752924982794219, 0.028905712319339298, 0.028905712319339298, 0.028905712319339298, 0.5815554026152787, 0.5808671713695802, 0.5987611837577426, 0.6455609084652443, 0.7584308327598073, 0.8644184445973847, 0.9098417068134893, 0.9497591190640055, 0.9332415691672402, 0.8768066070199587, 0.8458362009635237, 0.6792842395044735, 0.6159669649002064, 0.5836200963523744, 0.028905712319339298, 0.02752924982794219, 0.02752924982794219, 0.02752924982794219, 0.02752924982794219, 0.02752924982794219, 0.02615278733654508, 0.026841018582243633, 0.026841018582243633, 0.028217481073640742, 0.028905712319339298, 0.4755677907777013, 0.6648313833448039, 0.7474191328286304, 0.7701307639366827, 0.8059187887130076, 0.8141775636613903, 0.8313833448038541, 0.8506538196834136, 0.8857536132140399, 0.9387474191328287, 0.9449415003441156, 0.9064005505849966, 0.8637302133516862, 0.8444597384721266, 0.817618719889883, 0.8107364074328974, 0.7763248451479697, 0.7591190640055059, 0.7164487267721955, 0.6173434273916035, 0.45629731589814176, 0.46249139710942877, 0.1913282863041982, 0.09772883688919477, 0.08602890571231935, 0.03372333103922918, 0.9070887818306951, 0.8045423262216105, 0.030970406056434963, 0.029593943565037854, 0.029593943565037854, 0.029593943565037854, 0.030970406056434963, 0.030282174810736407, 0.029593943565037854, 0.028905712319339298, 0.028905712319339298, 0.029593943565037854, 0.030970406056434963, 0.030970406056434963, 0.030970406056434963, 0.030970406056434963, 0.031658637302133516, 0.03234686854783207, 0.03234686854783207, 0.03234686854783207, 0.03303509979353063, 0.03303509979353063, 0.03303509979353063, 0.03509979353062629, 0.6551961459050241, 0.7370956641431521, 0.8079834824501032, 0.8637302133516862, 0.8898830006882312, 0.9105299380591879, 0.9215416379903648, 0.9387474191328287, 0.9470061940812113, 0.9298004129387474, 0.9201651754989677, 0.9002064693737095, 0.8802477632484514, 0.8417068134893324, 0.779077770130764, 0.6958017894012388, 0.6483138334480385, 0.5987611837577426, 0.7446662078458361, 0.8534067446662078, 0.9291121816930489, 0.8947006194081212, 0.8004129387474191, 0.7054370268410186, 0.6524432209222298, 0.6551961459050241, 0.6283551273227804, 0.5877494838265658, 0.5671025464556091, 0.5643496214728149, 0.5464556090846524, 0.49965588437715075, 0.4969029593943565, 0.5003441156228493, 0.47212663454920856, 0.465244322092223, 0.4631796283551273, 0.4748795595320027, 0.47900894700619406, 0.48864418444597385, 0.4569855471438403, 0.7529249827942188, 0.8217481073640743, 0.8733654507914659, 0.9091534755677908, 0.9318651066758431, 0.9463179628355127, 0.9401238816242258, 0.9201651754989677, 0.8905712319339298, 0.8520302821748107, 0.7859600825877495, 0.6992429456297315, 0.522367515485203, 0.5237439779766001, 0.5154852030282174, 0.48107364074328973, 0.46730901582931866, 0.45836200963523743, 0.44872677219545765, 0.43977976600137647, 0.428079834824501, 0.4198210598761184, 0.4012388162422574, 0.39022711631108054, 0.3847212663454921, 0.9456297315898142, 0.370956641431521, 0.3599449415003441, 0.34480385409497594, 0.32415691672401925, 0.31383344803854096, 0.30626290433585684, 0.2993805918788713, 0.29456297315898144, 0.289057123193393, 0.27873365450791465, 0.26703372333103925, 0.258086717136958, 0.25602202339986235, 0.25602202339986235, 0.25464556090846524, 0.2429456297315898, 0.2037164487267722, 0.21679284239504473, 0.25120440467997246, 0.28217481073640743, 0.3131452167928424, 0.3262216104611149, 0.856159669649002, 0.41775636613902273, 0.42945629731589813, 0.42050929112181695, 0.4225739848589126, 0.41569167240192706, 0.41706813489332417, 0.42601514108740535, 0.42876806607019957, 0.4473503097040606, 0.45973847212663455, 0.45629731589814176, 0.45492085340674465, 0.4459738472126635, 0.4494150034411562, 0.4088093599449415, 0.8128011011699932, 0.860977288368892, 0.8898830006882312, 0.9284239504473503, 0.9483826565726085, 0.9421885753613214, 0.899518238128011, 0.8768066070199587, 0.8375774260151411, 0.791465932553338, 0.4507914659325533, 0.4452856159669649, 0.4328974535443909, 0.3977976600137646, 0.3620096352374398, 0.22092222986923607, 0.21059876118375775, 0.20715760495526497, 0.20165175498967652, 0.2002752924982794, 0.2050929112181693, 0.20578114246386786, 0.2050929112181693, 0.2050929112181693, 0.20715760495526497, 0.20922229869236064, 0.2112869924294563, 0.21679284239504473, 0.2188575361321404, 0.2401927047487956, 0.28355127322780455, 0.5313145216792843, 0.559532002752925, 0.5671025464556091, 0.5705437026841018, 0.5643496214728149, 0.6015141087405368, 0.635237439779766, 0.6820371644872677, 0.7921541637990365, 0.8492773571920165, 0.9008947006194081, 0.9339298004129387, 0.9421885753613214, 0.9132828630419821, 0.8761183757742601, 0.8134893324156917, 0.7426015141087405, 0.6607019958706125, 0.6145905024088094, 0.5939435650378527, 0.5443909153475568, 0.5636613902271164, 0.5629731589814178, 0.5505849965588437, 0.5361321403991741, 0.5946317962835512, 0.47212663454920856, 0.44803854094975915, 0.3909153475567791, 0.370956641431521, 0.364762560220234, 0.35788024776324845, 0.3558155540261528, 0.34824501032346866, 0.3434273916035788, 0.3434273916035788, 0.3620096352374398, 0.43702684101858225, 0.48520302821748107, 0.289057123193393, 0.2567102546455609, 0.40949759119064005, 0.395732966276669, 0.383344803854095, 0.22092222986923607, 0.2174810736407433, 0.21816930488644184, 0.2188575361321404, 0.2188575361321404, 0.2188575361321404, 0.21954576737783896, 0.22092222986923607, 0.22092222986923607, 0.22161046111493463, 0.23055746730901583, 0.22436338609772882, 0.22573984858912594, 0.22505161734342738, 0.22505161734342738, 0.2264280798348245, 0.22711631108052305, 0.22849277357192016, 0.22918100481761872, 0.23193392980041294, 0.23950447350309703, 0.25326909841706813, 0.27116311080523053, 0.3379215416379904, 0.4253269098417068, 0.8671713695801789], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF2807.gap.json b/pfam_gap_rates/DUF2807.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..3fa25e04a8536d33644ad178ef90036b32eb6569
--- /dev/null
+++ b/pfam_gap_rates/DUF2807.gap.json
@@ -0,0 +1 @@
+{"family": "DUF2807", "n_seqs": 620, "length": 217, "gap_rates": [0.5983870967741935, 0.29838709677419356, 0.22580645161290322, 0.19032258064516128, 0.17419354838709677, 0.17258064516129032, 0.17096774193548386, 0.16774193548387098, 0.16612903225806452, 0.16129032258064516, 0.15806451612903225, 0.1532258064516129, 0.15, 0.15, 0.15, 0.15, 0.15, 0.14838709677419354, 0.14838709677419354, 0.14516129032258066, 0.17096774193548386, 0.9419354838709677, 0.14677419354838708, 0.14516129032258066, 0.14516129032258066, 0.14516129032258066, 0.14516129032258066, 0.14516129032258066, 0.14516129032258066, 0.14516129032258066, 0.14838709677419354, 0.21451612903225806, 0.1967741935483871, 0.1435483870967742, 0.14193548387096774, 0.1403225806451613, 0.1403225806451613, 0.1403225806451613, 0.1403225806451613, 0.15806451612903225, 0.15645161290322582, 0.14193548387096774, 0.14193548387096774, 0.14193548387096774, 0.14193548387096774, 0.1403225806451613, 0.1403225806451613, 0.14677419354838708, 0.14838709677419354, 0.15, 0.6387096774193548, 0.8258064516129032, 0.9274193548387096, 0.896774193548387, 0.7661290322580645, 0.5548387096774193, 0.14838709677419354, 0.19838709677419356, 0.19193548387096773, 0.19032258064516128, 0.1774193548387097, 0.17580645161290323, 0.15, 0.7096774193548387, 0.8741935483870967, 0.9193548387096774, 0.8080645161290323, 0.6241935483870967, 0.28225806451612906, 0.1693548387096774, 0.1596774193548387, 0.14193548387096774, 0.1403225806451613, 0.13548387096774195, 0.1338709677419355, 0.1338709677419355, 0.13225806451612904, 0.13064516129032258, 0.9387096774193548, 0.13064516129032258, 0.13064516129032258, 0.11774193548387096, 0.09838709677419355, 0.09516129032258064, 0.08548387096774193, 0.0935483870967742, 0.08387096774193549, 0.08225806451612903, 0.08064516129032258, 0.08387096774193549, 0.08064516129032258, 0.08064516129032258, 0.07741935483870968, 0.07580645161290323, 0.07741935483870968, 0.9258064516129032, 0.932258064516129, 0.9370967741935484, 0.9387096774193548, 0.9387096774193548, 0.9387096774193548, 0.9387096774193548, 0.9387096774193548, 0.9387096774193548, 0.9451612903225807, 0.9387096774193548, 0.9387096774193548, 0.9387096774193548, 0.9387096774193548, 0.9387096774193548, 0.9370967741935484, 0.9338709677419355, 0.932258064516129, 0.9096774193548387, 0.36774193548387096, 0.1629032258064516, 0.1435483870967742, 0.13064516129032258, 0.12419354838709677, 0.11774193548387096, 0.11290322580645161, 0.10967741935483871, 0.1032258064516129, 0.10161290322580645, 0.10161290322580645, 0.9483870967741935, 0.9419354838709677, 0.09838709677419355, 0.09838709677419355, 0.09838709677419355, 0.0967741935483871, 0.09032258064516129, 0.09032258064516129, 0.08870967741935484, 0.09193548387096774, 0.0935483870967742, 0.5709677419354838, 0.03225806451612903, 0.027419354838709678, 0.025806451612903226, 0.02258064516129032, 0.02258064516129032, 0.01935483870967742, 0.017741935483870968, 0.017741935483870968, 0.017741935483870968, 0.014516129032258065, 0.012903225806451613, 0.020967741935483872, 0.016129032258064516, 0.016129032258064516, 0.017741935483870968, 0.020967741935483872, 0.024193548387096774, 0.8935483870967742, 0.03064516129032258, 0.043548387096774194, 0.043548387096774194, 0.0467741935483871, 0.0467741935483871, 0.04516129032258064, 0.04516129032258064, 0.04516129032258064, 0.04516129032258064, 0.04516129032258064, 0.0467741935483871, 0.0467741935483871, 0.0467741935483871, 0.0532258064516129, 0.04838709677419355, 0.04838709677419355, 0.04838709677419355, 0.054838709677419356, 0.056451612903225805, 0.06290322580645161, 0.07419354838709677, 0.07258064516129033, 0.07741935483870968, 0.07258064516129033, 0.07741935483870968, 0.07741935483870968, 0.08064516129032258, 0.08064516129032258, 0.08064516129032258, 0.08064516129032258, 0.08225806451612903, 0.08225806451612903, 0.08548387096774193, 0.08548387096774193, 0.08870967741935484, 0.08709677419354839, 0.08870967741935484, 0.09032258064516129, 0.1, 0.11129032258064517, 0.13064516129032258, 0.14516129032258066, 0.14838709677419354, 0.1532258064516129, 0.15806451612903225, 0.1596774193548387, 0.16129032258064516, 0.16129032258064516, 0.16129032258064516, 0.16451612903225807, 0.16451612903225807, 0.16612903225806452, 0.16612903225806452, 0.16612903225806452, 0.16774193548387098, 0.1693548387096774, 0.17419354838709677, 0.19516129032258064, 0.20967741935483872, 0.22419354838709676, 0.2645161290322581, 0.3548387096774194], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF2867.gap.json b/pfam_gap_rates/DUF2867.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e1406820e63ff56d7b16553f9c017a3ec24f40d9
--- /dev/null
+++ b/pfam_gap_rates/DUF2867.gap.json
@@ -0,0 +1 @@
+{"family": "DUF2867", "n_seqs": 394, "length": 174, "gap_rates": [0.7233502538071066, 0.6091370558375635, 0.5431472081218274, 0.4619289340101523, 0.41116751269035534, 0.3553299492385787, 0.25888324873096447, 0.23096446700507614, 0.2182741116751269, 0.20558375634517767, 0.19289340101522842, 0.17766497461928935, 0.16243654822335024, 0.13705583756345177, 0.10913705583756345, 0.4543147208121827, 0.5253807106598984, 0.5050761421319797, 0.3401015228426396, 0.1598984771573604, 0.07106598984771574, 0.06345177664974619, 0.050761421319796954, 0.050761421319796954, 0.048223350253807105, 0.048223350253807105, 0.048223350253807105, 0.050761421319796954, 0.0532994923857868, 0.12436548223350254, 0.7258883248730964, 0.0532994923857868, 0.050761421319796954, 0.048223350253807105, 0.9441624365482234, 0.9441624365482234, 0.048223350253807105, 0.04568527918781726, 0.04568527918781726, 0.04568527918781726, 0.048223350253807105, 0.04568527918781726, 0.04568527918781726, 0.350253807106599, 0.3426395939086294, 0.04314720812182741, 0.04314720812182741, 0.048223350253807105, 0.04568527918781726, 0.04314720812182741, 0.37817258883248733, 0.37817258883248733, 0.3756345177664975, 0.04060913705583756, 0.04060913705583756, 0.04060913705583756, 0.04060913705583756, 0.04314720812182741, 0.03807106598984772, 0.03807106598984772, 0.03807106598984772, 0.03807106598984772, 0.03807106598984772, 0.04314720812182741, 0.03807106598984772, 0.03807106598984772, 0.7538071065989848, 0.7614213197969543, 0.8147208121827412, 0.8248730964467005, 0.8274111675126904, 0.8908629441624365, 0.9467005076142132, 0.9035532994923858, 0.8807106598984772, 0.15736040609137056, 0.13705583756345177, 0.1218274111675127, 0.11421319796954314, 0.10913705583756345, 0.09390862944162437, 0.07614213197969544, 0.06598984771573604, 0.0583756345177665, 0.06091370558375635, 0.06091370558375635, 0.9467005076142132, 0.9467005076142132, 0.949238578680203, 0.9467005076142132, 0.9416243654822335, 0.04314720812182741, 0.030456852791878174, 0.03553299492385787, 0.030456852791878174, 0.04568527918781726, 0.04060913705583756, 0.03299492385786802, 0.03553299492385787, 0.02284263959390863, 0.02030456852791878, 0.02030456852791878, 0.017766497461928935, 0.3299492385786802, 0.3350253807106599, 0.33756345177664976, 0.8654822335025381, 0.34517766497461927, 0.3350253807106599, 0.3299492385786802, 0.32741116751269034, 0.017766497461928935, 0.02284263959390863, 0.02284263959390863, 0.02284263959390863, 0.02284263959390863, 0.6776649746192893, 0.9441624365482234, 0.9213197969543148, 0.017766497461928935, 0.02030456852791878, 0.017766497461928935, 0.012690355329949238, 0.012690355329949238, 0.012690355329949238, 0.012690355329949238, 0.012690355329949238, 0.012690355329949238, 0.012690355329949238, 0.012690355329949238, 0.012690355329949238, 0.012690355329949238, 0.8147208121827412, 0.9390862944162437, 0.8578680203045685, 0.748730964467005, 0.6954314720812182, 0.4010152284263959, 0.1319796954314721, 0.1218274111675127, 0.1218274111675127, 0.09137055837563451, 0.007614213197969543, 0.007614213197969543, 0.005076142131979695, 0.005076142131979695, 0.005076142131979695, 0.005076142131979695, 0.005076142131979695, 0.005076142131979695, 0.005076142131979695, 0.005076142131979695, 0.005076142131979695, 0.005076142131979695, 0.005076142131979695, 0.005076142131979695, 0.005076142131979695, 0.005076142131979695, 0.007614213197969543, 0.012690355329949238, 0.012690355329949238, 0.012690355329949238, 0.012690355329949238, 0.012690355329949238, 0.012690355329949238, 0.012690355329949238, 0.015228426395939087, 0.015228426395939087, 0.015228426395939087, 0.017766497461928935, 0.02030456852791878, 0.04060913705583756, 0.14974619289340102, 0.34517766497461927], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF2877.gap.json b/pfam_gap_rates/DUF2877.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..554fbd45c77da62b2870ca90b6e61974d2cbba9d
--- /dev/null
+++ b/pfam_gap_rates/DUF2877.gap.json
@@ -0,0 +1 @@
+{"family": "DUF2877", "n_seqs": 114, "length": 119, "gap_rates": [0.19298245614035087, 0.06140350877192982, 0.02631578947368421, 0.017543859649122806, 0.017543859649122806, 0.017543859649122806, 0.017543859649122806, 0.017543859649122806, 0.017543859649122806, 0.017543859649122806, 0.017543859649122806, 0.017543859649122806, 0.017543859649122806, 0.017543859649122806, 0.017543859649122806, 0.017543859649122806, 0.017543859649122806, 0.017543859649122806, 0.017543859649122806, 0.017543859649122806, 0.017543859649122806, 0.017543859649122806, 0.017543859649122806, 0.017543859649122806, 0.02631578947368421, 0.043859649122807015, 0.03508771929824561, 0.03508771929824561, 0.043859649122807015, 0.03508771929824561, 0.03508771929824561, 0.03508771929824561, 0.043859649122807015, 0.03508771929824561, 0.03508771929824561, 0.03508771929824561, 0.043859649122807015, 0.06140350877192982, 0.21929824561403508, 0.2982456140350877, 0.3684210526315789, 0.34210526315789475, 0.7982456140350878, 0.868421052631579, 0.9385964912280702, 0.9298245614035088, 0.8333333333333334, 0.7280701754385965, 0.03508771929824561, 0.02631578947368421, 0.02631578947368421, 0.017543859649122806, 0.017543859649122806, 0.017543859649122806, 0.017543859649122806, 0.017543859649122806, 0.017543859649122806, 0.017543859649122806, 0.017543859649122806, 0.017543859649122806, 0.017543859649122806, 0.017543859649122806, 0.017543859649122806, 0.017543859649122806, 0.017543859649122806, 0.017543859649122806, 0.017543859649122806, 0.017543859649122806, 0.017543859649122806, 0.017543859649122806, 0.017543859649122806, 0.017543859649122806, 0.017543859649122806, 0.017543859649122806, 0.017543859649122806, 0.02631578947368421, 0.02631578947368421, 0.017543859649122806, 0.017543859649122806, 0.017543859649122806, 0.02631578947368421, 0.02631578947368421, 0.02631578947368421, 0.10526315789473684, 0.11403508771929824, 0.13157894736842105, 0.13157894736842105, 0.3508771929824561, 0.2807017543859649, 0.9385964912280702, 0.9473684210526315, 0.9473684210526315, 0.8157894736842105, 0.07894736842105263, 0.05263157894736842, 0.05263157894736842, 0.05263157894736842, 0.03508771929824561, 0.03508771929824561, 0.03508771929824561, 0.03508771929824561, 0.03508771929824561, 0.03508771929824561, 0.03508771929824561, 0.03508771929824561, 0.043859649122807015, 0.043859649122807015, 0.043859649122807015, 0.043859649122807015, 0.043859649122807015, 0.043859649122807015, 0.043859649122807015, 0.043859649122807015, 0.043859649122807015, 0.043859649122807015, 0.043859649122807015, 0.08771929824561403, 0.16666666666666666, 0.6491228070175439], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF2887.gap.json b/pfam_gap_rates/DUF2887.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..8cc43fd63e7f7416bfe1f499d7d45a7b5b021372
--- /dev/null
+++ b/pfam_gap_rates/DUF2887.gap.json
@@ -0,0 +1 @@
+{"family": "DUF2887", "n_seqs": 242, "length": 208, "gap_rates": [0.23140495867768596, 0.21487603305785125, 0.21487603305785125, 0.21074380165289255, 0.2024793388429752, 0.19834710743801653, 0.19421487603305784, 0.19421487603305784, 0.19834710743801653, 0.19834710743801653, 0.19834710743801653, 0.19834710743801653, 0.19834710743801653, 0.19421487603305784, 0.19008264462809918, 0.19008264462809918, 0.1859504132231405, 0.1859504132231405, 0.18181818181818182, 0.18181818181818182, 0.18181818181818182, 0.47520661157024796, 0.32644628099173556, 0.18181818181818182, 0.17355371900826447, 0.1652892561983471, 0.1652892561983471, 0.1652892561983471, 0.16115702479338842, 0.15289256198347106, 0.15289256198347106, 0.15289256198347106, 0.15289256198347106, 0.15702479338842976, 0.15702479338842976, 0.15702479338842976, 0.15702479338842976, 0.15702479338842976, 0.16115702479338842, 0.16115702479338842, 0.1652892561983471, 0.17768595041322313, 0.18181818181818182, 0.17768595041322313, 0.17768595041322313, 0.17768595041322313, 0.17768595041322313, 0.18181818181818182, 0.17355371900826447, 0.17355371900826447, 0.17768595041322313, 0.17768595041322313, 0.19008264462809918, 0.25206611570247933, 0.5578512396694215, 0.4628099173553719, 0.2066115702479339, 0.19421487603305784, 0.21074380165289255, 0.19008264462809918, 0.19008264462809918, 0.19008264462809918, 0.19008264462809918, 0.1859504132231405, 0.1859504132231405, 0.19421487603305784, 0.19834710743801653, 0.19834710743801653, 0.19834710743801653, 0.21074380165289255, 0.21487603305785125, 0.21487603305785125, 0.21487603305785125, 0.21487603305785125, 0.21487603305785125, 0.21487603305785125, 0.21074380165289255, 0.21487603305785125, 0.2190082644628099, 0.2190082644628099, 0.2190082644628099, 0.2190082644628099, 0.2190082644628099, 0.2231404958677686, 0.2190082644628099, 0.2231404958677686, 0.2190082644628099, 0.22727272727272727, 0.2231404958677686, 0.3305785123966942, 0.9090909090909091, 0.2190082644628099, 0.2231404958677686, 0.2231404958677686, 0.2231404958677686, 0.2231404958677686, 0.2231404958677686, 0.21487603305785125, 0.21487603305785125, 0.21487603305785125, 0.2190082644628099, 0.2190082644628099, 0.2190082644628099, 0.2190082644628099, 0.2190082644628099, 0.2190082644628099, 0.2231404958677686, 0.2190082644628099, 0.2190082644628099, 0.2396694214876033, 0.2396694214876033, 0.9132231404958677, 0.9132231404958677, 0.8925619834710744, 0.2603305785123967, 0.2190082644628099, 0.2190082644628099, 0.2231404958677686, 0.2190082644628099, 0.2190082644628099, 0.2231404958677686, 0.24380165289256198, 0.24380165289256198, 0.30991735537190085, 0.21487603305785125, 0.2066115702479339, 0.2024793388429752, 0.19834710743801653, 0.19834710743801653, 0.19834710743801653, 0.19834710743801653, 0.19834710743801653, 0.9462809917355371, 0.9462809917355371, 0.9462809917355371, 0.9462809917355371, 0.19834710743801653, 0.19834710743801653, 0.21487603305785125, 0.2231404958677686, 0.22727272727272727, 0.2809917355371901, 0.2190082644628099, 0.19008264462809918, 0.19008264462809918, 0.19008264462809918, 0.19008264462809918, 0.19008264462809918, 0.18181818181818182, 0.17768595041322313, 0.17355371900826447, 0.17355371900826447, 0.17355371900826447, 0.1859504132231405, 0.17768595041322313, 0.17355371900826447, 0.17355371900826447, 0.16942148760330578, 0.16942148760330578, 0.16942148760330578, 0.16942148760330578, 0.16942148760330578, 0.17355371900826447, 0.17768595041322313, 0.17355371900826447, 0.17768595041322313, 0.17768595041322313, 0.17768595041322313, 0.16942148760330578, 0.16942148760330578, 0.1652892561983471, 0.1652892561983471, 0.1652892561983471, 0.19421487603305784, 0.1859504132231405, 0.19834710743801653, 0.22727272727272727, 0.23553719008264462, 0.2231404958677686, 0.4090909090909091, 0.30578512396694213, 0.2644628099173554, 0.23140495867768596, 0.16115702479338842, 0.1487603305785124, 0.1487603305785124, 0.1487603305785124, 0.1487603305785124, 0.1487603305785124, 0.1487603305785124, 0.1487603305785124, 0.1487603305785124, 0.1487603305785124, 0.1487603305785124, 0.1487603305785124, 0.1487603305785124, 0.15702479338842976, 0.1487603305785124, 0.15702479338842976, 0.16115702479338842, 0.16115702479338842, 0.16115702479338842, 0.1652892561983471, 0.1652892561983471, 0.1652892561983471, 0.17355371900826447, 0.17355371900826447, 0.17768595041322313], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF29.gap.json b/pfam_gap_rates/DUF29.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..bf472f1415f49c7f6925a3cd09c4fa370327d20c
--- /dev/null
+++ b/pfam_gap_rates/DUF29.gap.json
@@ -0,0 +1 @@
+{"family": "DUF29", "n_seqs": 684, "length": 145, "gap_rates": [0.39473684210526316, 0.22514619883040934, 0.2149122807017544, 0.20906432748538012, 0.20906432748538012, 0.20906432748538012, 0.20760233918128654, 0.20760233918128654, 0.20760233918128654, 0.20614035087719298, 0.20614035087719298, 0.20614035087719298, 0.20614035087719298, 0.20321637426900585, 0.20175438596491227, 0.20029239766081872, 0.195906432748538, 0.19444444444444445, 0.19298245614035087, 0.19298245614035087, 0.1915204678362573, 0.1915204678362573, 0.1915204678362573, 0.18859649122807018, 0.1871345029239766, 0.15935672514619884, 0.15350877192982457, 0.14181286549707603, 0.11695906432748537, 0.07748538011695906, 0.07602339181286549, 0.07748538011695906, 0.07894736842105263, 0.07456140350877193, 0.07456140350877193, 0.0804093567251462, 0.06286549707602339, 0.06432748538011696, 0.06871345029239766, 0.06578947368421052, 0.06432748538011696, 0.06432748538011696, 0.9371345029239766, 0.06578947368421052, 0.06578947368421052, 0.06578947368421052, 0.06432748538011696, 0.06578947368421052, 0.06871345029239766, 0.06871345029239766, 0.06871345029239766, 0.07017543859649122, 0.07017543859649122, 0.07017543859649122, 0.06286549707602339, 0.06286549707602339, 0.059941520467836254, 0.06140350877192982, 0.06140350877192982, 0.8099415204678363, 0.814327485380117, 0.7880116959064327, 0.059941520467836254, 0.05847953216374269, 0.05847953216374269, 0.059941520467836254, 0.18128654970760233, 0.06578947368421052, 0.9108187134502924, 0.06578947368421052, 0.06578947368421052, 0.06578947368421052, 0.06578947368421052, 0.06286549707602339, 0.06140350877192982, 0.06140350877192982, 0.059941520467836254, 0.059941520467836254, 0.059941520467836254, 0.059941520467836254, 0.059941520467836254, 0.059941520467836254, 0.06140350877192982, 0.06140350877192982, 0.06286549707602339, 0.06140350877192982, 0.05701754385964912, 0.05555555555555555, 0.05701754385964912, 0.05263157894736842, 0.17690058479532164, 0.14912280701754385, 0.054093567251461985, 0.05555555555555555, 0.05847953216374269, 0.05847953216374269, 0.059941520467836254, 0.06432748538011696, 0.06871345029239766, 0.06871345029239766, 0.10526315789473684, 0.1023391812865497, 0.07163742690058479, 0.9473684210526315, 0.9298245614035088, 0.07017543859649122, 0.06871345029239766, 0.06871345029239766, 0.06871345029239766, 0.07017543859649122, 0.07017543859649122, 0.07163742690058479, 0.07163742690058479, 0.07456140350877193, 0.07748538011695906, 0.07748538011695906, 0.07748538011695906, 0.07894736842105263, 0.07894736842105263, 0.09502923976608187, 0.15204678362573099, 0.17251461988304093, 0.18859649122807018, 0.26900584795321636, 0.32456140350877194, 0.2894736842105263, 0.20614035087719298, 0.195906432748538, 0.195906432748538, 0.195906432748538, 0.19736842105263158, 0.20175438596491227, 0.19883040935672514, 0.19883040935672514, 0.20175438596491227, 0.20760233918128654, 0.21198830409356725, 0.2149122807017544, 0.21637426900584794, 0.21783625730994152, 0.23684210526315788, 0.26900584795321636, 0.29385964912280704, 0.3055555555555556, 0.3991228070175439], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF296.gap.json b/pfam_gap_rates/DUF296.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a70501b840d311b196320ccf55a92f7599ca45a9
--- /dev/null
+++ b/pfam_gap_rates/DUF296.gap.json
@@ -0,0 +1 @@
+{"family": "DUF296", "n_seqs": 1206, "length": 136, "gap_rates": [0.5099502487562189, 0.24792703150912107, 0.12023217247097844, 0.08872305140961857, 0.07131011608623548, 0.06633499170812604, 0.06633499170812604, 0.06550580431177445, 0.06467661691542288, 0.06467661691542288, 0.05721393034825871, 0.0505804311774461, 0.04975124378109453, 0.04809286898839138, 0.04643449419568822, 0.04228855721393035, 0.04228855721393035, 0.03482587064676617, 0.03150912106135987, 0.03067993366500829, 0.03150912106135987, 0.03067993366500829, 0.02736318407960199, 0.028192371475953566, 0.615257048092869, 0.0406301824212272, 0.02902155887230514, 0.026533996683250415, 0.02570480928689884, 0.024875621890547265, 0.024875621890547265, 0.23880597014925373, 0.022388059701492536, 0.022388059701492536, 0.020729684908789386, 0.019071310116086235, 0.019071310116086235, 0.019071310116086235, 0.019071310116086235, 0.020729684908789386, 0.019071310116086235, 0.017412935323383085, 0.9262023217247097, 0.9087893864013267, 0.8499170812603648, 0.01990049751243781, 0.024875621890547265, 0.028192371475953566, 0.029850746268656716, 0.03067993366500829, 0.05638474295190713, 0.09203980099502487, 0.6716417910447762, 0.753731343283582, 0.8822553897180763, 0.9386401326699834, 0.9096185737976783, 0.8598673300165838, 0.7338308457711443, 0.19237147595356552, 0.07213930348258707, 0.04892205638474295, 0.03067993366500829, 0.02902155887230514, 0.02570480928689884, 0.02321724709784411, 0.011608623548922056, 0.012437810945273632, 0.013266998341625208, 0.012437810945273632, 0.00912106135986733, 0.008291873963515755, 0.009950248756218905, 0.01077943615257048, 0.0538971807628524, 0.009950248756218905, 0.009950248756218905, 0.009950248756218905, 0.009950248756218905, 0.00912106135986733, 0.33747927031509123, 0.39800995024875624, 0.42786069651741293, 0.6708126036484245, 0.7213930348258707, 0.9402985074626866, 0.6981757877280266, 0.439469320066335, 0.42039800995024873, 0.3880597014925373, 0.2752902155887231, 0.013266998341625208, 0.0978441127694859, 0.6940298507462687, 0.8308457711442786, 0.9295190713101161, 0.7379767827529021, 0.6791044776119403, 0.5638474295190713, 0.49087893864013266, 0.01077943615257048, 0.011608623548922056, 0.011608623548922056, 0.011608623548922056, 0.011608623548922056, 0.011608623548922056, 0.01077943615257048, 0.014925373134328358, 0.06218905472636816, 0.012437810945273632, 0.015754560530679935, 0.014096185737976783, 0.014096185737976783, 0.015754560530679935, 0.014096185737976783, 0.01658374792703151, 0.017412935323383085, 0.019071310116086235, 0.6998341625207297, 0.0406301824212272, 0.32669983416252074, 0.06053067993366501, 0.03150912106135987, 0.08872305140961857, 0.04643449419568822, 0.03648424543946932, 0.03814262023217247, 0.04228855721393035, 0.04560530679933665, 0.04643449419568822, 0.05638474295190713, 0.06218905472636816, 0.08374792703150911, 0.15091210613598674, 0.2296849087893864, 0.5232172470978441], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF3021.gap.json b/pfam_gap_rates/DUF3021.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a1df0674ae2440c7979714ce887b15cd99ec7019
--- /dev/null
+++ b/pfam_gap_rates/DUF3021.gap.json
@@ -0,0 +1 @@
+{"family": "DUF3021", "n_seqs": 220, "length": 152, "gap_rates": [0.8954545454545455, 0.7318181818181818, 0.42727272727272725, 0.30454545454545456, 0.2590909090909091, 0.21818181818181817, 0.18181818181818182, 0.1590909090909091, 0.11818181818181818, 0.10454545454545454, 0.1, 0.09545454545454546, 0.07727272727272727, 0.06818181818181818, 0.06363636363636363, 0.05454545454545454, 0.1, 0.07727272727272727, 0.02727272727272727, 0.022727272727272728, 0.031818181818181815, 0.04090909090909091, 0.03636363636363636, 0.031818181818181815, 0.02727272727272727, 0.031818181818181815, 0.031818181818181815, 0.05, 0.06363636363636363, 0.08636363636363636, 0.14545454545454545, 0.39545454545454545, 0.6772727272727272, 0.7090909090909091, 0.7136363636363636, 0.7227272727272728, 0.75, 0.8045454545454546, 0.7772727272727272, 0.7272727272727273, 0.7181818181818181, 0.7090909090909091, 0.6954545454545454, 0.6318181818181818, 0.09545454545454546, 0.05454545454545454, 0.05, 0.03636363636363636, 0.02727272727272727, 0.013636363636363636, 0.00909090909090909, 0.013636363636363636, 0.02727272727272727, 0.05909090909090909, 0.05909090909090909, 0.05454545454545454, 0.02727272727272727, 0.01818181818181818, 0.01818181818181818, 0.00909090909090909, 0.00909090909090909, 0.00909090909090909, 0.19090909090909092, 0.17727272727272728, 0.16818181818181818, 0.14545454545454545, 0.013636363636363636, 0.013636363636363636, 0.01818181818181818, 0.9363636363636364, 0.05454545454545454, 0.05454545454545454, 0.05909090909090909, 0.03636363636363636, 0.9409090909090909, 0.9, 0.09090909090909091, 0.022727272727272728, 0.01818181818181818, 0.013636363636363636, 0.004545454545454545, 0.004545454545454545, 0.004545454545454545, 0.004545454545454545, 0.004545454545454545, 0.9090909090909091, 0.95, 0.9227272727272727, 0.9090909090909091, 0.004545454545454545, 0.004545454545454545, 0.004545454545454545, 0.0, 0.0, 0.0, 0.0, 0.004545454545454545, 0.004545454545454545, 0.004545454545454545, 0.004545454545454545, 0.0, 0.0, 0.004545454545454545, 0.004545454545454545, 0.004545454545454545, 0.0, 0.004545454545454545, 0.04090909090909091, 0.00909090909090909, 0.03636363636363636, 0.05909090909090909, 0.9136363636363637, 0.7909090909090909, 0.1409090909090909, 0.09090909090909091, 0.05454545454545454, 0.05, 0.04090909090909091, 0.01818181818181818, 0.00909090909090909, 0.03636363636363636, 0.8818181818181818, 0.04090909090909091, 0.022727272727272728, 0.013636363636363636, 0.00909090909090909, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.004545454545454545, 0.00909090909090909, 0.013636363636363636, 0.02727272727272727, 0.04090909090909091, 0.05, 0.07727272727272727, 0.07727272727272727, 0.07727272727272727, 0.08636363636363636, 0.09090909090909091, 0.09090909090909091, 0.09545454545454546, 0.1, 0.1, 0.15, 0.20909090909090908], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF3037.gap.json b/pfam_gap_rates/DUF3037.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..fadb8ce1500595c89df27d826222ee3cc0337d12
--- /dev/null
+++ b/pfam_gap_rates/DUF3037.gap.json
@@ -0,0 +1 @@
+{"family": "DUF3037", "n_seqs": 183, "length": 122, "gap_rates": [0.060109289617486336, 0.0546448087431694, 0.03278688524590164, 0.01639344262295082, 0.01639344262295082, 0.01639344262295082, 0.01092896174863388, 0.01092896174863388, 0.01092896174863388, 0.01092896174863388, 0.01092896174863388, 0.01092896174863388, 0.01092896174863388, 0.01092896174863388, 0.01092896174863388, 0.01092896174863388, 0.01092896174863388, 0.01092896174863388, 0.01092896174863388, 0.01092896174863388, 0.01092896174863388, 0.01092896174863388, 0.01092896174863388, 0.04371584699453552, 0.0273224043715847, 0.01092896174863388, 0.01092896174863388, 0.01092896174863388, 0.01092896174863388, 0.01092896174863388, 0.01092896174863388, 0.01092896174863388, 0.01092896174863388, 0.01092896174863388, 0.01092896174863388, 0.01092896174863388, 0.00546448087431694, 0.00546448087431694, 0.907103825136612, 0.00546448087431694, 0.00546448087431694, 0.00546448087431694, 0.0, 0.0, 0.0, 0.0, 0.0, 0.01092896174863388, 0.01092896174863388, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.00546448087431694, 0.00546448087431694, 0.00546448087431694, 0.00546448087431694, 0.01092896174863388, 0.01092896174863388, 0.01639344262295082, 0.03278688524590164, 0.03278688524590164, 0.03278688524590164, 0.08196721311475409, 0.10382513661202186, 0.912568306010929, 0.08743169398907104, 0.07103825136612021, 0.06557377049180328, 0.06557377049180328, 0.0546448087431694, 0.04371584699453552, 0.9453551912568307, 0.912568306010929, 0.03278688524590164, 0.03278688524590164, 0.03278688524590164, 0.0273224043715847, 0.0273224043715847, 0.0273224043715847, 0.0273224043715847, 0.0273224043715847, 0.0273224043715847, 0.0273224043715847, 0.0273224043715847, 0.0273224043715847, 0.0273224043715847, 0.03825136612021858, 0.03825136612021858, 0.0273224043715847, 0.0273224043715847, 0.0273224043715847, 0.0273224043715847, 0.0273224043715847, 0.03278688524590164, 0.03278688524590164, 0.03278688524590164, 0.03278688524590164, 0.03278688524590164, 0.03278688524590164, 0.03278688524590164, 0.03278688524590164, 0.04918032786885246, 0.04371584699453552, 0.04371584699453552, 0.04371584699453552, 0.04371584699453552, 0.04371584699453552, 0.04371584699453552, 0.04371584699453552, 0.04371584699453552, 0.04371584699453552, 0.04918032786885246, 0.04918032786885246, 0.06557377049180328, 0.07650273224043716, 0.12021857923497267], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF3040.gap.json b/pfam_gap_rates/DUF3040.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..7db37e58140494dce5a7d25619149392b9a4b118
--- /dev/null
+++ b/pfam_gap_rates/DUF3040.gap.json
@@ -0,0 +1 @@
+{"family": "DUF3040", "n_seqs": 296, "length": 94, "gap_rates": [0.19256756756756757, 0.09121621621621621, 0.06418918918918919, 0.060810810810810814, 0.0472972972972973, 0.04391891891891892, 0.037162162162162164, 0.037162162162162164, 0.037162162162162164, 0.010135135135135136, 0.010135135135135136, 0.010135135135135136, 0.010135135135135136, 0.0033783783783783786, 0.0, 0.0, 0.0, 0.0, 0.05067567567567568, 0.02364864864864865, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.20270270270270271, 0.19932432432432431, 0.15202702702702703, 0.16216216216216217, 0.13851351351351351, 0.10810810810810811, 0.918918918918919, 0.8817567567567568, 0.12837837837837837, 0.08445945945945946, 0.07432432432432433, 0.125, 0.5, 0.4527027027027027, 0.08108108108108109, 0.0472972972972973, 0.5945945945945946, 0.013513513513513514, 0.010135135135135136, 0.010135135135135136, 0.010135135135135136, 0.010135135135135136, 0.010135135135135136, 0.010135135135135136, 0.013513513513513514, 0.013513513513513514, 0.013513513513513514, 0.9425675675675675, 0.013513513513513514, 0.013513513513513514, 0.013513513513513514, 0.016891891891891893, 0.016891891891891893, 0.013513513513513514, 0.016891891891891893, 0.02027027027027027, 0.8851351351351351, 0.030405405405405407, 0.02702702702702703, 0.04391891891891892, 0.033783783783783786, 0.09121621621621621, 0.7094594594594594, 0.7364864864864865, 0.9425675675675675, 0.7871621621621622, 0.7128378378378378, 0.6993243243243243, 0.13513513513513514, 0.060810810810810814, 0.04054054054054054, 0.04054054054054054, 0.04054054054054054, 0.04391891891891892, 0.05067567567567568, 0.060810810810810814, 0.07094594594594594, 0.07432432432432433, 0.08108108108108109, 0.09121621621621621, 0.10135135135135136, 0.11486486486486487, 0.13851351351351351, 0.26013513513513514, 0.8648648648648649], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF3046.gap.json b/pfam_gap_rates/DUF3046.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..5ba9d6d433bf66c93bd69ca4431be43bcb232ca2
--- /dev/null
+++ b/pfam_gap_rates/DUF3046.gap.json
@@ -0,0 +1 @@
+{"family": "DUF3046", "n_seqs": 205, "length": 62, "gap_rates": [0.08780487804878048, 0.08292682926829269, 0.07317073170731707, 0.06341463414634146, 0.06341463414634146, 0.06341463414634146, 0.05853658536585366, 0.05853658536585366, 0.05365853658536585, 0.014634146341463415, 0.014634146341463415, 0.014634146341463415, 0.014634146341463415, 0.014634146341463415, 0.014634146341463415, 0.04878048780487805, 0.024390243902439025, 0.01951219512195122, 0.01951219512195122, 0.014634146341463415, 0.00975609756097561, 0.004878048780487805, 0.004878048780487805, 0.004878048780487805, 0.004878048780487805, 0.004878048780487805, 0.004878048780487805, 0.004878048780487805, 0.004878048780487805, 0.0, 0.0, 0.16097560975609757, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.00975609756097561, 0.0, 0.004878048780487805, 0.004878048780487805, 0.004878048780487805, 0.004878048780487805, 0.004878048780487805, 0.004878048780487805, 0.004878048780487805, 0.004878048780487805, 0.004878048780487805, 0.004878048780487805, 0.004878048780487805, 0.00975609756097561, 0.01951219512195122, 0.024390243902439025, 0.05853658536585366, 0.11219512195121951, 0.15609756097560976, 0.6390243902439025], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF3072.gap.json b/pfam_gap_rates/DUF3072.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..df29b7d132e2b9e1e1eed5c18ef1b9cda13f9f92
--- /dev/null
+++ b/pfam_gap_rates/DUF3072.gap.json
@@ -0,0 +1 @@
+{"family": "DUF3072", "n_seqs": 102, "length": 59, "gap_rates": [0.7254901960784313, 0.22549019607843138, 0.13725490196078433, 0.12745098039215685, 0.11764705882352941, 0.11764705882352941, 0.11764705882352941, 0.11764705882352941, 0.11764705882352941, 0.10784313725490197, 0.08823529411764706, 0.058823529411764705, 0.0196078431372549, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.7450980392156863, 0.7254901960784313, 0.0, 0.0, 0.9411764705882353, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.00980392156862745, 0.00980392156862745, 0.00980392156862745, 0.049019607843137254, 0.0784313725490196, 0.14705882352941177, 0.22549019607843138, 0.35294117647058826], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF3106.gap.json b/pfam_gap_rates/DUF3106.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..35a2de8f5970776f632e2509e54043a08e93b441
--- /dev/null
+++ b/pfam_gap_rates/DUF3106.gap.json
@@ -0,0 +1 @@
+{"family": "DUF3106", "n_seqs": 147, "length": 105, "gap_rates": [0.3197278911564626, 0.2789115646258503, 0.272108843537415, 0.2653061224489796, 0.2653061224489796, 0.2653061224489796, 0.25170068027210885, 0.25170068027210885, 0.24489795918367346, 0.24489795918367346, 0.23809523809523808, 0.23809523809523808, 0.22448979591836735, 0.9251700680272109, 0.2108843537414966, 0.20408163265306123, 0.20408163265306123, 0.20408163265306123, 0.19727891156462585, 0.1836734693877551, 0.16326530612244897, 0.1836734693877551, 0.1564625850340136, 0.16326530612244897, 0.14285714285714285, 0.1360544217687075, 0.1360544217687075, 0.1360544217687075, 0.14285714285714285, 0.14285714285714285, 0.14285714285714285, 0.14965986394557823, 0.1292517006802721, 0.10884353741496598, 0.09523809523809523, 0.07482993197278912, 0.061224489795918366, 0.061224489795918366, 0.061224489795918366, 0.05442176870748299, 0.047619047619047616, 0.047619047619047616, 0.047619047619047616, 0.047619047619047616, 0.04081632653061224, 0.034013605442176874, 0.034013605442176874, 0.034013605442176874, 0.027210884353741496, 0.02040816326530612, 0.013605442176870748, 0.006802721088435374, 0.006802721088435374, 0.006802721088435374, 0.006802721088435374, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.006802721088435374, 0.006802721088435374, 0.006802721088435374, 0.02040816326530612, 0.02040816326530612, 0.027210884353741496, 0.04081632653061224, 0.061224489795918366, 0.061224489795918366, 0.05442176870748299, 0.05442176870748299, 0.05442176870748299, 0.05442176870748299, 0.061224489795918366, 0.061224489795918366, 0.061224489795918366, 0.4013605442176871, 0.40816326530612246, 0.40816326530612246, 0.09523809523809523, 0.08843537414965986, 0.11564625850340136, 0.12244897959183673, 0.11564625850340136, 0.22448979591836735, 0.25170068027210885, 0.25170068027210885, 0.1836734693877551, 0.1836734693877551, 0.19727891156462585, 0.19727891156462585, 0.2108843537414966, 0.2108843537414966, 0.2108843537414966, 0.2108843537414966, 0.23809523809523808, 0.3469387755102041, 0.40816326530612246, 0.8775510204081632], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF3117.gap.json b/pfam_gap_rates/DUF3117.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..4d0922ca1f3c5f5f5c65e0433c3f66aaa1ed43a0
--- /dev/null
+++ b/pfam_gap_rates/DUF3117.gap.json
@@ -0,0 +1 @@
+{"family": "DUF3117", "n_seqs": 146, "length": 50, "gap_rates": [0.0273972602739726, 0.0136986301369863, 0.0136986301369863, 0.0136986301369863, 0.0136986301369863, 0.0136986301369863, 0.0136986301369863, 0.0136986301369863, 0.0136986301369863, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0821917808219178, 0.3561643835616438], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF3119.gap.json b/pfam_gap_rates/DUF3119.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..49d920f0b58b68bd4d5e6a319c8cf8821b5cebf7
--- /dev/null
+++ b/pfam_gap_rates/DUF3119.gap.json
@@ -0,0 +1 @@
+{"family": "DUF3119", "n_seqs": 108, "length": 165, "gap_rates": [0.4537037037037037, 0.23148148148148148, 0.09259259259259259, 0.06481481481481481, 0.06481481481481481, 0.06481481481481481, 0.06481481481481481, 0.06481481481481481, 0.06481481481481481, 0.06481481481481481, 0.06481481481481481, 0.06481481481481481, 0.05555555555555555, 0.037037037037037035, 0.037037037037037035, 0.037037037037037035, 0.037037037037037035, 0.046296296296296294, 0.046296296296296294, 0.027777777777777776, 0.027777777777777776, 0.027777777777777776, 0.027777777777777776, 0.7962962962962963, 0.8703703703703703, 0.9074074074074074, 0.9444444444444444, 0.9444444444444444, 0.9074074074074074, 0.8425925925925926, 0.5, 0.027777777777777776, 0.037037037037037035, 0.027777777777777776, 0.027777777777777776, 0.018518518518518517, 0.018518518518518517, 0.018518518518518517, 0.027777777777777776, 0.027777777777777776, 0.027777777777777776, 0.027777777777777776, 0.027777777777777776, 0.027777777777777776, 0.027777777777777776, 0.027777777777777776, 0.027777777777777776, 0.027777777777777776, 0.018518518518518517, 0.018518518518518517, 0.018518518518518517, 0.018518518518518517, 0.018518518518518517, 0.018518518518518517, 0.018518518518518517, 0.018518518518518517, 0.018518518518518517, 0.018518518518518517, 0.018518518518518517, 0.018518518518518517, 0.018518518518518517, 0.018518518518518517, 0.018518518518518517, 0.018518518518518517, 0.018518518518518517, 0.018518518518518517, 0.009259259259259259, 0.5462962962962963, 0.6203703703703703, 0.8518518518518519, 0.8796296296296297, 0.9259259259259259, 0.9444444444444444, 0.9444444444444444, 0.9351851851851852, 0.9166666666666666, 0.8703703703703703, 0.8425925925925926, 0.5462962962962963, 0.5185185185185185, 0.5185185185185185, 0.5185185185185185, 0.5185185185185185, 0.009259259259259259, 0.009259259259259259, 0.009259259259259259, 0.009259259259259259, 0.009259259259259259, 0.5277777777777778, 0.5277777777777778, 0.5277777777777778, 0.5277777777777778, 0.018518518518518517, 0.009259259259259259, 0.009259259259259259, 0.009259259259259259, 0.009259259259259259, 0.009259259259259259, 0.009259259259259259, 0.009259259259259259, 0.009259259259259259, 0.009259259259259259, 0.018518518518518517, 0.018518518518518517, 0.1574074074074074, 0.018518518518518517, 0.027777777777777776, 0.027777777777777776, 0.018518518518518517, 0.8518518518518519, 0.8518518518518519, 0.018518518518518517, 0.018518518518518517, 0.018518518518518517, 0.018518518518518517, 0.018518518518518517, 0.018518518518518517, 0.018518518518518517, 0.018518518518518517, 0.018518518518518517, 0.018518518518518517, 0.018518518518518517, 0.5648148148148148, 0.5092592592592593, 0.8888888888888888, 0.8888888888888888, 0.9074074074074074, 0.9166666666666666, 0.9166666666666666, 0.9166666666666666, 0.9166666666666666, 0.9444444444444444, 0.9259259259259259, 0.9166666666666666, 0.9166666666666666, 0.9166666666666666, 0.9166666666666666, 0.9074074074074074, 0.8888888888888888, 0.8888888888888888, 0.5092592592592593, 0.5092592592592593, 0.5092592592592593, 0.018518518518518517, 0.027777777777777776, 0.027777777777777776, 0.027777777777777776, 0.027777777777777776, 0.027777777777777776, 0.027777777777777776, 0.027777777777777776, 0.027777777777777776, 0.027777777777777776, 0.027777777777777776, 0.027777777777777776, 0.027777777777777776, 0.027777777777777776, 0.037037037037037035, 0.037037037037037035, 0.037037037037037035, 0.046296296296296294, 0.046296296296296294, 0.06481481481481481, 0.42592592592592593, 0.7037037037037037], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF313.gap.json b/pfam_gap_rates/DUF313.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..3e885eb10dc9b47482a25528927cbcd086d8388e
--- /dev/null
+++ b/pfam_gap_rates/DUF313.gap.json
@@ -0,0 +1 @@
+{"family": "DUF313", "n_seqs": 120, "length": 129, "gap_rates": [0.9416666666666667, 0.825, 0.775, 0.725, 0.7083333333333334, 0.675, 0.6333333333333333, 0.6, 0.5333333333333333, 0.49166666666666664, 0.475, 0.4583333333333333, 0.425, 0.4083333333333333, 0.39166666666666666, 0.2833333333333333, 0.8916666666666667, 0.625, 0.16666666666666666, 0.15, 0.13333333333333333, 0.125, 0.125, 0.06666666666666667, 0.058333333333333334, 0.058333333333333334, 0.058333333333333334, 0.058333333333333334, 0.058333333333333334, 0.058333333333333334, 0.058333333333333334, 0.058333333333333334, 0.058333333333333334, 0.058333333333333334, 0.058333333333333334, 0.06666666666666667, 0.06666666666666667, 0.06666666666666667, 0.058333333333333334, 0.058333333333333334, 0.058333333333333334, 0.06666666666666667, 0.05, 0.05, 0.058333333333333334, 0.05, 0.03333333333333333, 0.075, 0.2, 0.13333333333333333, 0.06666666666666667, 0.9166666666666666, 0.9166666666666666, 0.016666666666666666, 0.016666666666666666, 0.025, 0.025, 0.025, 0.041666666666666664, 0.041666666666666664, 0.05, 0.041666666666666664, 0.03333333333333333, 0.025, 0.9333333333333333, 0.9333333333333333, 0.8583333333333333, 0.5833333333333334, 0.375, 0.2833333333333333, 0.26666666666666666, 0.25, 0.24166666666666667, 0.95, 0.95, 0.16666666666666666, 0.058333333333333334, 0.025, 0.03333333333333333, 0.05, 0.05, 0.03333333333333333, 0.03333333333333333, 0.03333333333333333, 0.9416666666666667, 0.03333333333333333, 0.03333333333333333, 0.03333333333333333, 0.041666666666666664, 0.058333333333333334, 0.075, 0.075, 0.9333333333333333, 0.06666666666666667, 0.058333333333333334, 0.06666666666666667, 0.06666666666666667, 0.075, 0.075, 0.075, 0.075, 0.075, 0.075, 0.08333333333333333, 0.075, 0.7666666666666667, 0.7916666666666666, 0.8916666666666667, 0.7916666666666666, 0.7833333333333333, 0.675, 0.275, 0.20833333333333334, 0.14166666666666666, 0.11666666666666667, 0.09166666666666666, 0.09166666666666666, 0.09166666666666666, 0.09166666666666666, 0.09166666666666666, 0.09166666666666666, 0.09166666666666666, 0.09166666666666666, 0.09166666666666666, 0.09166666666666666, 0.1, 0.2916666666666667, 0.38333333333333336, 0.95], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF3151.gap.json b/pfam_gap_rates/DUF3151.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..fa18e7fca75f1d4635253db4f91f9b1ca1466b89
--- /dev/null
+++ b/pfam_gap_rates/DUF3151.gap.json
@@ -0,0 +1 @@
+{"family": "DUF3151", "n_seqs": 177, "length": 144, "gap_rates": [0.14689265536723164, 0.07909604519774012, 0.06779661016949153, 0.06779661016949153, 0.06779661016949153, 0.06779661016949153, 0.06779661016949153, 0.06779661016949153, 0.06779661016949153, 0.06779661016949153, 0.06779661016949153, 0.9378531073446328, 0.943502824858757, 0.903954802259887, 0.3050847457627119, 0.11864406779661017, 0.096045197740113, 0.07909604519774012, 0.05649717514124294, 0.05084745762711865, 0.9491525423728814, 0.05084745762711865, 0.04519774011299435, 0.05084745762711865, 0.07344632768361582, 0.05649717514124294, 0.05084745762711865, 0.9378531073446328, 0.03954802259887006, 0.01694915254237288, 0.8983050847457628, 0.9152542372881356, 0.9265536723163842, 0.8983050847457628, 0.8983050847457628, 0.01694915254237288, 0.011299435028248588, 0.011299435028248588, 0.011299435028248588, 0.011299435028248588, 0.011299435028248588, 0.011299435028248588, 0.011299435028248588, 0.011299435028248588, 0.005649717514124294, 0.005649717514124294, 0.005649717514124294, 0.005649717514124294, 0.005649717514124294, 0.005649717514124294, 0.005649717514124294, 0.005649717514124294, 0.005649717514124294, 0.005649717514124294, 0.03954802259887006, 0.04519774011299435, 0.0847457627118644, 0.9491525423728814, 0.04519774011299435, 0.03954802259887006, 0.005649717514124294, 0.8305084745762712, 0.864406779661017, 0.903954802259887, 0.9265536723163842, 0.9209039548022598, 0.903954802259887, 0.8361581920903954, 0.8192090395480226, 0.005649717514124294, 0.005649717514124294, 0.005649717514124294, 0.005649717514124294, 0.005649717514124294, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.005649717514124294, 0.005649717514124294, 0.005649717514124294, 0.005649717514124294, 0.005649717514124294, 0.005649717514124294, 0.005649717514124294, 0.005649717514124294, 0.005649717514124294, 0.005649717514124294, 0.005649717514124294, 0.005649717514124294, 0.005649717514124294, 0.005649717514124294, 0.005649717514124294, 0.005649717514124294, 0.005649717514124294, 0.005649717514124294, 0.005649717514124294, 0.005649717514124294, 0.005649717514124294, 0.005649717514124294, 0.005649717514124294, 0.005649717514124294, 0.005649717514124294, 0.005649717514124294, 0.005649717514124294, 0.005649717514124294, 0.011299435028248588, 0.062146892655367235, 0.12994350282485875, 0.3559322033898305], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF3298.gap.json b/pfam_gap_rates/DUF3298.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d58a2f3b07a11d252c40b4e61439c07017cdcacb
--- /dev/null
+++ b/pfam_gap_rates/DUF3298.gap.json
@@ -0,0 +1 @@
+{"family": "DUF3298", "n_seqs": 668, "length": 107, "gap_rates": [0.6511976047904192, 0.39820359281437123, 0.27395209580838326, 0.25748502994011974, 0.2470059880239521, 0.23652694610778444, 0.22305389221556887, 0.46407185628742514, 0.44461077844311375, 0.19311377245508982, 0.1781437125748503, 0.14820359281437126, 0.14520958083832336, 0.1317365269461078, 0.12425149700598802, 0.11077844311377245, 0.10479041916167664, 0.09580838323353294, 0.09281437125748503, 0.08532934131736528, 0.08532934131736528, 0.08532934131736528, 0.08532934131736528, 0.07934131736526946, 0.08083832335329341, 0.08832335329341318, 0.5913173652694611, 0.6467065868263473, 0.6721556886227545, 0.6946107784431138, 0.7215568862275449, 0.812874251497006, 0.8473053892215568, 0.9476047904191617, 0.9101796407185628, 0.8398203592814372, 0.7290419161676647, 0.7110778443113772, 0.6856287425149701, 0.6601796407185628, 0.6377245508982036, 0.5853293413173652, 0.11077844311377245, 0.2994011976047904, 0.2934131736526946, 0.014970059880239521, 0.2934131736526946, 0.3023952095808383, 0.31137724550898205, 0.3143712574850299, 0.33532934131736525, 0.36976047904191617, 0.4101796407185629, 0.46407185628742514, 0.5359281437125748, 0.6482035928143712, 0.75, 0.8592814371257484, 0.8967065868263473, 0.9446107784431138, 0.9296407185628742, 0.8892215568862275, 0.8008982035928144, 0.7155688622754491, 0.5793413173652695, 0.5014970059880239, 0.4311377245508982, 0.39221556886227543, 0.35179640718562877, 0.3218562874251497, 0.312874251497006, 0.30389221556886226, 0.3008982035928144, 0.29191616766467066, 0.014970059880239521, 0.02245508982035928, 0.02245508982035928, 0.011976047904191617, 0.0074850299401197605, 0.0014970059880239522, 0.0, 0.0, 0.8008982035928144, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.004491017964071856, 0.008982035928143712, 0.008982035928143712, 0.008982035928143712, 0.008982035928143712, 0.010479041916167664, 0.010479041916167664, 0.011976047904191617, 0.014970059880239521, 0.02245508982035928, 0.03293413173652695, 0.08832335329341318, 0.27395209580838326, 0.6856287425149701], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF3324.gap.json b/pfam_gap_rates/DUF3324.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..21f29fa6af23ebdb094ef53959efe48c2e809dba
--- /dev/null
+++ b/pfam_gap_rates/DUF3324.gap.json
@@ -0,0 +1 @@
+{"family": "DUF3324", "n_seqs": 215, "length": 160, "gap_rates": [0.3674418604651163, 0.20930232558139536, 0.12093023255813953, 0.11162790697674418, 0.10697674418604651, 0.10232558139534884, 0.09767441860465116, 0.09302325581395349, 0.08837209302325581, 0.08837209302325581, 0.07906976744186046, 0.06976744186046512, 0.05581395348837209, 0.05581395348837209, 0.05581395348837209, 0.05581395348837209, 0.05581395348837209, 0.05581395348837209, 0.05581395348837209, 0.05581395348837209, 0.06046511627906977, 0.9488372093023256, 0.9302325581395349, 0.10697674418604651, 0.7209302325581395, 0.06046511627906977, 0.05581395348837209, 0.05581395348837209, 0.05581395348837209, 0.05581395348837209, 0.05116279069767442, 0.05116279069767442, 0.046511627906976744, 0.046511627906976744, 0.046511627906976744, 0.046511627906976744, 0.046511627906976744, 0.06046511627906977, 0.06046511627906977, 0.06976744186046512, 0.9488372093023256, 0.06046511627906977, 0.06046511627906977, 0.06046511627906977, 0.046511627906976744, 0.04186046511627907, 0.04186046511627907, 0.046511627906976744, 0.046511627906976744, 0.04186046511627907, 0.04186046511627907, 0.04186046511627907, 0.04186046511627907, 0.04186046511627907, 0.04186046511627907, 0.04186046511627907, 0.04186046511627907, 0.037209302325581395, 0.037209302325581395, 0.037209302325581395, 0.037209302325581395, 0.037209302325581395, 0.03255813953488372, 0.027906976744186046, 0.027906976744186046, 0.027906976744186046, 0.027906976744186046, 0.03255813953488372, 0.03255813953488372, 0.03255813953488372, 0.03255813953488372, 0.03255813953488372, 0.03255813953488372, 0.046511627906976744, 0.12558139534883722, 0.09767441860465116, 0.06976744186046512, 0.08837209302325581, 0.09302325581395349, 0.05581395348837209, 0.04186046511627907, 0.037209302325581395, 0.046511627906976744, 0.04186046511627907, 0.046511627906976744, 0.04186046511627907, 0.046511627906976744, 0.037209302325581395, 0.037209302325581395, 0.037209302325581395, 0.037209302325581395, 0.037209302325581395, 0.037209302325581395, 0.037209302325581395, 0.03255813953488372, 0.03255813953488372, 0.04186046511627907, 0.046511627906976744, 0.05116279069767442, 0.05581395348837209, 0.13488372093023257, 0.10697674418604651, 0.10232558139534884, 0.046511627906976744, 0.046511627906976744, 0.05116279069767442, 0.05116279069767442, 0.05116279069767442, 0.05116279069767442, 0.05116279069767442, 0.05116279069767442, 0.05581395348837209, 0.05581395348837209, 0.05581395348837209, 0.05581395348837209, 0.05581395348837209, 0.05581395348837209, 0.05581395348837209, 0.05581395348837209, 0.7674418604651163, 0.8465116279069768, 0.8744186046511628, 0.9116279069767442, 0.9162790697674419, 0.9162790697674419, 0.9162790697674419, 0.9255813953488372, 0.9255813953488372, 0.9441860465116279, 0.9255813953488372, 0.9162790697674419, 0.9162790697674419, 0.9162790697674419, 0.9116279069767442, 0.9069767441860465, 0.8511627906976744, 0.8325581395348837, 0.6976744186046512, 0.06046511627906977, 0.06511627906976744, 0.06976744186046512, 0.06976744186046512, 0.07441860465116279, 0.07441860465116279, 0.07441860465116279, 0.08372093023255814, 0.08372093023255814, 0.08372093023255814, 0.09302325581395349, 0.09302325581395349, 0.09302325581395349, 0.09302325581395349, 0.10232558139534884, 0.11627906976744186, 0.13023255813953488, 0.17209302325581396, 0.16279069767441862, 0.20465116279069767, 0.26976744186046514, 0.5302325581395348], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF3328.gap.json b/pfam_gap_rates/DUF3328.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..6d74090b62590de0cff48dc1c501774a96b0041d
--- /dev/null
+++ b/pfam_gap_rates/DUF3328.gap.json
@@ -0,0 +1 @@
+{"family": "DUF3328", "n_seqs": 874, "length": 266, "gap_rates": [0.919908466819222, 0.8604118993135011, 0.8203661327231121, 0.7837528604118993, 0.7517162471395881, 0.7356979405034325, 0.7196796338672768, 0.6967963386727689, 0.6784897025171625, 0.6647597254004577, 0.648741418764302, 0.9336384439359268, 0.9130434782608695, 0.6361556064073226, 0.6041189931350115, 0.5778032036613272, 0.5594965675057209, 0.5503432494279176, 0.540045766590389, 0.5331807780320366, 0.5320366132723112, 0.528604118993135, 0.5320366132723112, 0.528604118993135, 0.5263157894736842, 0.5240274599542334, 0.5217391304347826, 0.5194508009153318, 0.522883295194508, 0.5240274599542334, 0.522883295194508, 0.522883295194508, 0.5205949656750573, 0.5205949656750573, 0.5194508009153318, 0.522883295194508, 0.5217391304347826, 0.517162471395881, 0.5194508009153318, 0.5183066361556065, 0.5194508009153318, 0.5274599542334096, 0.5240274599542334, 0.8558352402745996, 0.897025171624714, 0.9302059496567505, 0.9462242562929062, 0.9416475972540046, 0.9187643020594966, 0.879862700228833, 0.8215102974828375, 0.700228832951945, 0.6212814645308925, 0.5572082379862701, 0.5251716247139588, 0.5011441647597255, 0.4851258581235698, 0.477116704805492, 0.459954233409611, 0.448512585812357, 0.4473684210526316, 0.4473684210526316, 0.43821510297482835, 0.43592677345537756, 0.4279176201372998, 0.4233409610983982, 0.42105263157894735, 0.42105263157894735, 0.42219679633867274, 0.42219679633867274, 0.43935926773455375, 0.4668192219679634, 0.4645308924485126, 0.8432494279176201, 0.8878718535469108, 0.9427917620137299, 0.9302059496567505, 0.8615560640732265, 0.7917620137299771, 0.648741418764302, 0.4805491990846682, 0.41304347826086957, 0.3878718535469107, 0.37528604118993136, 0.35812356979405036, 0.3501144164759725, 0.34210526315789475, 0.33981693363844395, 0.3352402745995423, 0.3340961098398169, 0.3329519450800915, 0.32837528604118993, 0.32608695652173914, 0.32494279176201374, 0.40389016018306634, 0.3135011441647597, 0.30778032036613273, 0.30663615560640733, 0.30320366132723114, 0.30205949656750575, 0.3009153318077803, 0.8112128146453089, 0.3707093821510298, 0.35812356979405036, 0.35354691075514877, 0.3489702517162471, 0.3489702517162471, 0.34439359267734554, 0.2997711670480549, 0.2917620137299771, 0.28604118993135014, 0.2837528604118993, 0.2814645308924485, 0.2757437070938215, 0.2734553775743707, 0.2711670480549199, 0.2757437070938215, 0.914187643020595, 0.32265446224256294, 0.30892448512585813, 0.2963386727688787, 0.2826086956521739, 0.2803203661327231, 0.2757437070938215, 0.2723112128146453, 0.2700228832951945, 0.9107551487414187, 0.9462242562929062, 0.8283752860411899, 0.7139588100686499, 0.5778032036613272, 0.5148741418764302, 0.37643020594965676, 0.3329519450800915, 0.2791762013729977, 0.2654462242562929, 0.2929061784897025, 0.2757437070938215, 0.2654462242562929, 0.2608695652173913, 0.2562929061784897, 0.7768878718535469, 0.8649885583524027, 0.9256292906178489, 0.9347826086956522, 0.9118993135011442, 0.8215102974828375, 0.7265446224256293, 0.15789473684210525, 0.13615560640732266, 0.10068649885583524, 0.08695652173913043, 0.07894736842105263, 0.07093821510297482, 0.06750572082379863, 0.06407322654462243, 0.06064073226544622, 0.06064073226544622, 0.06292906178489703, 0.06407322654462243, 0.06521739130434782, 0.06521739130434782, 0.06407322654462243, 0.07780320366132723, 0.07551487414187644, 0.07208237986270023, 0.07437070938215103, 0.07665903890160183, 0.07093821510297482, 0.06864988558352403, 0.16590389016018306, 0.16018306636155608, 0.15102974828375287, 0.15789473684210525, 0.16132723112128147, 0.8363844393592678, 0.9073226544622426, 0.9439359267734554, 0.9267734553775744, 0.8707093821510298, 0.7757437070938215, 0.5652173913043478, 0.45194508009153317, 0.39588100686498856, 0.34668192219679633, 0.2620137299771167, 0.20022883295194507, 0.14988558352402745, 0.13501144164759726, 0.13043478260869565, 0.14530892448512586, 0.15789473684210525, 0.2540045766590389, 0.8192219679633868, 0.8821510297482837, 0.9473684210526315, 0.9393592677345538, 0.8535469107551488, 0.782608695652174, 0.2414187643020595, 0.16132723112128147, 0.12700228832951946, 0.08695652173913043, 0.06979405034324943, 0.06864988558352403, 0.06521739130434782, 0.06636155606407322, 0.06521739130434782, 0.06521739130434782, 0.06292906178489703, 0.06064073226544622, 0.059496567505720827, 0.05835240274599542, 0.06178489702517163, 0.06521739130434782, 0.06636155606407322, 0.06750572082379863, 0.06750572082379863, 0.06864988558352403, 0.06979405034324943, 0.07208237986270023, 0.07093821510297482, 0.07093821510297482, 0.07093821510297482, 0.9073226544622426, 0.9324942791762014, 0.8787185354691075, 0.11327231121281464, 0.13272311212814644, 0.11784897025171624, 0.10869565217391304, 0.15102974828375287, 0.17048054919908467, 0.2711670480549199, 0.8649885583524027, 0.32379862700228834, 0.13386727688787187, 0.11327231121281464, 0.10183066361556065, 0.09954233409610984, 0.10297482837528604, 0.09153318077803203, 0.8764302059496567, 0.9496567505720824, 0.9164759725400458, 0.8249427917620137, 0.14073226544622425, 0.10297482837528604, 0.09610983981693363, 0.11556064073226545, 0.10411899313501144, 0.08695652173913043, 0.08810068649885583, 0.08810068649885583, 0.08924485125858124, 0.09267734553775744, 0.09496567505720824, 0.10983981693363844, 0.12471395881006865, 0.18077803203661327, 0.20938215102974828, 0.2494279176201373, 0.2757437070938215, 0.32151029748283755, 0.4061784897025172, 0.6533180778032036], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF3333.gap.json b/pfam_gap_rates/DUF3333.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..5b15d71e381daa32ca75222a5eb0d8412388768f
--- /dev/null
+++ b/pfam_gap_rates/DUF3333.gap.json
@@ -0,0 +1 @@
+{"family": "DUF3333", "n_seqs": 238, "length": 160, "gap_rates": [0.8907563025210085, 0.2689075630252101, 0.1134453781512605, 0.07563025210084033, 0.058823529411764705, 0.058823529411764705, 0.0546218487394958, 0.0546218487394958, 0.0546218487394958, 0.0546218487394958, 0.0546218487394958, 0.0546218487394958, 0.0546218487394958, 0.0546218487394958, 0.0546218487394958, 0.05042016806722689, 0.05042016806722689, 0.05042016806722689, 0.05042016806722689, 0.05042016806722689, 0.05042016806722689, 0.05042016806722689, 0.05042016806722689, 0.05042016806722689, 0.05042016806722689, 0.05042016806722689, 0.05042016806722689, 0.05042016806722689, 0.05042016806722689, 0.05042016806722689, 0.05042016806722689, 0.05042016806722689, 0.05042016806722689, 0.05042016806722689, 0.05042016806722689, 0.05042016806722689, 0.05042016806722689, 0.05042016806722689, 0.05042016806722689, 0.05042016806722689, 0.05042016806722689, 0.05042016806722689, 0.058823529411764705, 0.058823529411764705, 0.06302521008403361, 0.06302521008403361, 0.06302521008403361, 0.06302521008403361, 0.06302521008403361, 0.06302521008403361, 0.06722689075630252, 0.06722689075630252, 0.07142857142857142, 0.07563025210084033, 0.07142857142857142, 0.07142857142857142, 0.07142857142857142, 0.07142857142857142, 0.8907563025210085, 0.8739495798319328, 0.08823529411764706, 0.09243697478991597, 0.09663865546218488, 0.09663865546218488, 0.10084033613445378, 0.1092436974789916, 0.6932773109243697, 0.5882352941176471, 0.6638655462184874, 0.33613445378151263, 0.3319327731092437, 0.3319327731092437, 0.2773109243697479, 0.9495798319327731, 0.27310924369747897, 0.27310924369747897, 0.13445378151260504, 0.13445378151260504, 0.13025210084033614, 0.12605042016806722, 0.12605042016806722, 0.12184873949579832, 0.13025210084033614, 0.13445378151260504, 0.13445378151260504, 0.13445378151260504, 0.13865546218487396, 0.13865546218487396, 0.13865546218487396, 0.13865546218487396, 0.13865546218487396, 0.13865546218487396, 0.13865546218487396, 0.13865546218487396, 0.13865546218487396, 0.8487394957983193, 0.8277310924369747, 0.2857142857142857, 0.25210084033613445, 0.24789915966386555, 0.7563025210084033, 0.2773109243697479, 0.24369747899159663, 0.21428571428571427, 0.21008403361344538, 0.19747899159663865, 0.10504201680672269, 0.10084033613445378, 0.10084033613445378, 0.09663865546218488, 0.09663865546218488, 0.09243697478991597, 0.09243697478991597, 0.09243697478991597, 0.09243697478991597, 0.09663865546218488, 0.09243697478991597, 0.09243697478991597, 0.09243697478991597, 0.09243697478991597, 0.09243697478991597, 0.09243697478991597, 0.09243697478991597, 0.09243697478991597, 0.09243697478991597, 0.09243697478991597, 0.09663865546218488, 0.10084033613445378, 0.10504201680672269, 0.10504201680672269, 0.11764705882352941, 0.1092436974789916, 0.10084033613445378, 0.10504201680672269, 0.10504201680672269, 0.10084033613445378, 0.10084033613445378, 0.10084033613445378, 0.10084033613445378, 0.10084033613445378, 0.10084033613445378, 0.10084033613445378, 0.10084033613445378, 0.10084033613445378, 0.10084033613445378, 0.10504201680672269, 0.10504201680672269, 0.10504201680672269, 0.10504201680672269, 0.10504201680672269, 0.10504201680672269, 0.1134453781512605, 0.13025210084033614, 0.1638655462184874, 0.18907563025210083, 0.25630252100840334, 0.3025210084033613, 0.3697478991596639, 0.5462184873949579, 0.7436974789915967], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF3339.gap.json b/pfam_gap_rates/DUF3339.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..1fb71bdc8b0b23300772a7e6e831c0f54d3bd690
--- /dev/null
+++ b/pfam_gap_rates/DUF3339.gap.json
@@ -0,0 +1 @@
+{"family": "DUF3339", "n_seqs": 250, "length": 67, "gap_rates": [0.196, 0.052, 0.012, 0.012, 0.012, 0.012, 0.008, 0.008, 0.008, 0.008, 0.008, 0.008, 0.008, 0.008, 0.008, 0.008, 0.004, 0.004, 0.004, 0.004, 0.004, 0.004, 0.004, 0.004, 0.004, 0.004, 0.004, 0.004, 0.004, 0.0, 0.0, 0.0, 0.004, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.004, 0.004, 0.004, 0.004, 0.004, 0.008, 0.008, 0.008, 0.012, 0.016, 0.016, 0.016, 0.02, 0.02, 0.02, 0.028, 0.028, 0.032, 0.04, 0.04, 0.044, 0.044, 0.048, 0.056, 0.056, 0.064, 0.276], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF3341.gap.json b/pfam_gap_rates/DUF3341.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b6457ec4118f18db78398e472e4994558241b622
--- /dev/null
+++ b/pfam_gap_rates/DUF3341.gap.json
@@ -0,0 +1 @@
+{"family": "DUF3341", "n_seqs": 204, "length": 175, "gap_rates": [0.6421568627450981, 0.25, 0.09313725490196079, 0.05392156862745098, 0.05392156862745098, 0.049019607843137254, 0.04411764705882353, 0.0392156862745098, 0.03431372549019608, 0.03431372549019608, 0.03431372549019608, 0.03431372549019608, 0.029411764705882353, 0.024509803921568627, 0.024509803921568627, 0.024509803921568627, 0.024509803921568627, 0.024509803921568627, 0.024509803921568627, 0.024509803921568627, 0.024509803921568627, 0.024509803921568627, 0.024509803921568627, 0.024509803921568627, 0.024509803921568627, 0.029411764705882353, 0.029411764705882353, 0.024509803921568627, 0.024509803921568627, 0.024509803921568627, 0.024509803921568627, 0.0196078431372549, 0.0196078431372549, 0.0196078431372549, 0.024509803921568627, 0.024509803921568627, 0.024509803921568627, 0.024509803921568627, 0.0196078431372549, 0.014705882352941176, 0.014705882352941176, 0.0196078431372549, 0.0196078431372549, 0.0196078431372549, 0.0196078431372549, 0.04411764705882353, 0.0392156862745098, 0.014705882352941176, 0.014705882352941176, 0.0196078431372549, 0.0196078431372549, 0.0196078431372549, 0.0196078431372549, 0.0196078431372549, 0.0196078431372549, 0.0196078431372549, 0.0196078431372549, 0.0196078431372549, 0.0196078431372549, 0.0196078431372549, 0.0196078431372549, 0.0196078431372549, 0.0196078431372549, 0.024509803921568627, 0.024509803921568627, 0.0196078431372549, 0.0196078431372549, 0.014705882352941176, 0.014705882352941176, 0.014705882352941176, 0.0196078431372549, 0.0196078431372549, 0.0196078431372549, 0.05392156862745098, 0.029411764705882353, 0.08823529411764706, 0.0392156862745098, 0.014705882352941176, 0.014705882352941176, 0.014705882352941176, 0.014705882352941176, 0.014705882352941176, 0.014705882352941176, 0.014705882352941176, 0.014705882352941176, 0.014705882352941176, 0.014705882352941176, 0.014705882352941176, 0.014705882352941176, 0.7990196078431373, 0.7990196078431373, 0.7990196078431373, 0.7990196078431373, 0.014705882352941176, 0.014705882352941176, 0.00980392156862745, 0.00980392156862745, 0.00980392156862745, 0.00980392156862745, 0.00980392156862745, 0.00980392156862745, 0.00980392156862745, 0.00980392156862745, 0.00980392156862745, 0.00980392156862745, 0.00980392156862745, 0.00980392156862745, 0.00980392156862745, 0.00980392156862745, 0.00980392156862745, 0.00980392156862745, 0.00980392156862745, 0.00980392156862745, 0.00980392156862745, 0.00980392156862745, 0.00980392156862745, 0.00980392156862745, 0.00980392156862745, 0.00980392156862745, 0.00980392156862745, 0.00980392156862745, 0.00980392156862745, 0.46078431372549017, 0.46078431372549017, 0.46568627450980393, 0.46568627450980393, 0.10294117647058823, 0.10294117647058823, 0.10294117647058823, 0.15196078431372548, 0.10784313725490197, 0.06862745098039216, 0.058823529411764705, 0.05392156862745098, 0.0196078431372549, 0.0196078431372549, 0.014705882352941176, 0.37745098039215685, 0.0196078431372549, 0.0196078431372549, 0.0196078431372549, 0.0196078431372549, 0.014705882352941176, 0.014705882352941176, 0.014705882352941176, 0.014705882352941176, 0.014705882352941176, 0.014705882352941176, 0.014705882352941176, 0.014705882352941176, 0.014705882352941176, 0.024509803921568627, 0.11274509803921569, 0.31862745098039214, 0.9362745098039216, 0.4166666666666667, 0.25980392156862747, 0.049019607843137254, 0.04411764705882353, 0.04411764705882353, 0.029411764705882353, 0.029411764705882353, 0.029411764705882353, 0.029411764705882353, 0.029411764705882353, 0.03431372549019608, 0.03431372549019608, 0.03431372549019608, 0.0392156862745098, 0.049019607843137254, 0.06862745098039216, 0.10784313725490197, 0.12254901960784313, 0.22549019607843138, 0.8529411764705882], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF3387.gap.json b/pfam_gap_rates/DUF3387.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..6d33e1df2eee785dd0d6d85bf99609b2d8d63825
--- /dev/null
+++ b/pfam_gap_rates/DUF3387.gap.json
@@ -0,0 +1 @@
+{"family": "DUF3387", "n_seqs": 537, "length": 377, "gap_rates": [0.845437616387337, 0.6536312849162011, 0.5418994413407822, 0.5102420856610801, 0.48044692737430167, 0.44878957169459965, 0.4301675977653631, 0.409683426443203, 0.3985102420856611, 0.38733705772811916, 0.33891992551210426, 0.33147113594040967, 0.32774674115456237, 0.3258845437616387, 0.3221601489757914, 0.3202979515828678, 0.3165735567970205, 0.31098696461824954, 0.30726256983240224, 0.30353817504655495, 0.30353817504655495, 0.3016759776536313, 0.3016759776536313, 0.3016759776536313, 0.3016759776536313, 0.29981378026070765, 0.29981378026070765, 0.29981378026070765, 0.297951582867784, 0.8994413407821229, 0.8919925512104283, 0.30353817504655495, 0.9441340782122905, 0.9422718808193669, 0.29608938547486036, 0.2942271880819367, 0.2905027932960894, 0.29236499068901306, 0.29236499068901306, 0.297951582867784, 0.297951582867784, 0.35195530726256985, 0.88268156424581, 0.3426443202979516, 0.34823091247672255, 0.35195530726256985, 0.3091247672253259, 0.30726256983240224, 0.29608938547486036, 0.2774674115456238, 0.2737430167597765, 0.2718808193668529, 0.2737430167597765, 0.2737430167597765, 0.27001862197392923, 0.24767225325884543, 0.2383612662942272, 0.22905027932960895, 0.2122905027932961, 0.20297951582867785, 0.18435754189944134, 0.17318435754189945, 0.1713221601489758, 0.17318435754189945, 0.16387337057728119, 0.7932960893854749, 0.8472998137802608, 0.8528864059590316, 0.8677839851024208, 0.8789571694599627, 0.9162011173184358, 0.931098696461825, 0.925512104283054, 0.8975791433891993, 0.8733705772811918, 0.8584729981378026, 0.8491620111731844, 0.845437616387337, 0.7262569832402235, 0.18994413407821228, 0.16759776536312848, 0.15828677839851024, 0.1564245810055866, 0.1564245810055866, 0.1564245810055866, 0.1564245810055866, 0.1564245810055866, 0.15456238361266295, 0.15456238361266295, 0.1527001862197393, 0.1527001862197393, 0.1527001862197393, 0.1527001862197393, 0.1527001862197393, 0.15083798882681565, 0.15083798882681565, 0.15083798882681565, 0.1527001862197393, 0.14711359404096835, 0.1452513966480447, 0.13594040968342644, 0.13966480446927373, 0.13966480446927373, 0.18994413407821228, 0.9329608938547486, 0.9422718808193669, 0.9441340782122905, 0.9478584729981379, 0.9478584729981379, 0.9441340782122905, 0.9441340782122905, 0.9422718808193669, 0.8584729981378026, 0.16201117318435754, 0.14152700186219738, 0.1378026070763501, 0.1452513966480447, 0.1378026070763501, 0.13966480446927373, 0.13966480446927373, 0.1452513966480447, 0.14711359404096835, 0.15456238361266295, 0.1452513966480447, 0.1378026070763501, 0.13594040968342644, 0.13594040968342644, 0.14152700186219738, 0.13966480446927373, 0.13966480446927373, 0.1378026070763501, 0.15828677839851024, 0.1378026070763501, 0.1378026070763501, 0.13966480446927373, 0.15083798882681565, 0.46368715083798884, 0.4934823091247672, 0.49906890130353815, 0.9422718808193669, 0.8901303538175046, 0.46741154562383613, 0.3165735567970205, 0.2122905027932961, 0.22346368715083798, 0.2756052141527002, 0.25139664804469275, 0.1787709497206704, 0.1303538175046555, 0.1303538175046555, 0.1266294227188082, 0.1266294227188082, 0.1266294227188082, 0.1266294227188082, 0.1266294227188082, 0.1266294227188082, 0.1266294227188082, 0.1266294227188082, 0.12290502793296089, 0.12290502793296089, 0.12290502793296089, 0.12290502793296089, 0.12290502793296089, 0.1266294227188082, 0.12476722532588454, 0.1191806331471136, 0.12290502793296089, 0.1527001862197393, 0.19553072625698323, 0.17318435754189945, 0.17318435754189945, 0.16759776536312848, 0.17690875232774675, 0.18435754189944134, 0.1750465549348231, 0.1750465549348231, 0.18435754189944134, 0.3407821229050279, 0.3500931098696462, 0.2737430167597765, 0.22160148975791433, 0.2048417132216015, 0.17690875232774675, 0.16387337057728119, 0.12476722532588454, 0.1340782122905028, 0.12290502793296089, 0.12290502793296089, 0.1266294227188082, 0.1266294227188082, 0.1303538175046555, 0.12849162011173185, 0.12476722532588454, 0.1266294227188082, 0.1378026070763501, 0.1340782122905028, 0.1266294227188082, 0.12290502793296089, 0.12476722532588454, 0.12476722532588454, 0.12290502793296089, 0.12104283054003724, 0.1154562383612663, 0.1191806331471136, 0.11173184357541899, 0.11173184357541899, 0.10986964618249534, 0.10986964618249534, 0.10800744878957169, 0.10614525139664804, 0.10614525139664804, 0.10614525139664804, 0.10800744878957169, 0.10986964618249534, 0.10986964618249534, 0.10986964618249534, 0.10800744878957169, 0.10614525139664804, 0.10986964618249534, 0.10800744878957169, 0.10800744878957169, 0.11173184357541899, 0.10800744878957169, 0.2644320297951583, 0.10614525139664804, 0.10614525139664804, 0.10614525139664804, 0.1042830540037244, 0.1042830540037244, 0.1005586592178771, 0.09869646182495345, 0.10242085661080075, 0.10242085661080075, 0.09683426443202979, 0.09497206703910614, 0.09497206703910614, 0.09497206703910614, 0.09869646182495345, 0.09683426443202979, 0.09683426443202979, 0.09683426443202979, 0.09683426443202979, 0.9106145251396648, 0.9106145251396648, 0.16201117318435754, 0.14711359404096835, 0.12849162011173185, 0.09683426443202979, 0.09497206703910614, 0.09683426443202979, 0.09683426443202979, 0.0931098696461825, 0.9162011173184358, 0.9199255121042831, 0.9441340782122905, 0.9441340782122905, 0.9441340782122905, 0.9162011173184358, 0.9124767225325885, 0.0931098696461825, 0.09683426443202979, 0.09683426443202979, 0.09683426443202979, 0.09497206703910614, 0.09683426443202979, 0.0931098696461825, 0.0931098696461825, 0.0931098696461825, 0.0931098696461825, 0.0931098696461825, 0.09683426443202979, 0.1005586592178771, 0.1005586592178771, 0.1005586592178771, 0.11731843575418995, 0.1154562383612663, 0.11173184357541899, 0.11173184357541899, 0.09869646182495345, 0.9478584729981379, 0.9385474860335196, 0.09869646182495345, 0.09683426443202979, 0.09683426443202979, 0.09869646182495345, 0.09869646182495345, 0.09683426443202979, 0.09869646182495345, 0.09869646182495345, 0.1005586592178771, 0.09683426443202979, 0.09683426443202979, 0.09683426443202979, 0.09869646182495345, 0.1005586592178771, 0.1005586592178771, 0.10800744878957169, 0.10986964618249534, 0.11731843575418995, 0.2383612662942272, 0.22160148975791433, 0.15828677839851024, 0.13221601489757914, 0.8901303538175046, 0.12849162011173185, 0.10800744878957169, 0.10242085661080075, 0.1042830540037244, 0.10242085661080075, 0.10614525139664804, 0.10800744878957169, 0.1005586592178771, 0.09869646182495345, 0.09869646182495345, 0.09869646182495345, 0.09869646182495345, 0.09497206703910614, 0.09683426443202979, 0.09497206703910614, 0.09497206703910614, 0.09497206703910614, 0.09497206703910614, 0.09683426443202979, 0.09869646182495345, 0.1042830540037244, 0.1042830540037244, 0.9348230912476723, 0.7281191806331471, 0.10242085661080075, 0.1042830540037244, 0.10800744878957169, 0.1154562383612663, 0.11731843575418995, 0.1191806331471136, 0.1191806331471136, 0.11731843575418995, 0.11731843575418995, 0.12290502793296089, 0.12104283054003724, 0.12290502793296089, 0.12476722532588454, 0.12476722532588454, 0.12476722532588454, 0.12290502793296089, 0.14338919925512103, 0.14711359404096835, 0.15083798882681565, 0.1601489757914339, 0.18063314711359404, 0.18808193668528864, 0.8919925512104283, 0.9292364990689013, 0.888268156424581, 0.24581005586592178, 0.24208566108007448, 0.24767225325884543, 0.24953445065176907, 0.2569832402234637, 0.260707635009311, 0.2681564245810056, 0.2737430167597765, 0.2811918063314711, 0.28305400372439476, 0.2905027932960894, 0.29608938547486036, 0.29608938547486036, 0.3016759776536313, 0.30726256983240224, 0.3128491620111732, 0.31843575418994413, 0.3370577281191806, 0.3612662942271881, 0.3854748603351955, 0.3947858472998138, 0.41527001862197394, 0.4618249534450652, 0.6163873370577281], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF3395.gap.json b/pfam_gap_rates/DUF3395.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e05675f833b065e27d01f1364a51ae30d8987a69
--- /dev/null
+++ b/pfam_gap_rates/DUF3395.gap.json
@@ -0,0 +1 @@
+{"family": "DUF3395", "n_seqs": 267, "length": 190, "gap_rates": [0.3970037453183521, 0.3707865168539326, 0.352059925093633, 0.3258426966292135, 0.30711610486891383, 0.30337078651685395, 0.29213483146067415, 0.2808988764044944, 0.2696629213483146, 0.26217228464419473, 0.25842696629213485, 0.250936329588015, 0.23595505617977527, 0.2209737827715356, 0.20224719101123595, 0.18726591760299627, 0.1647940074906367, 0.14606741573033707, 0.13857677902621723, 0.13108614232209737, 0.1198501872659176, 0.11235955056179775, 0.09737827715355805, 0.09363295880149813, 0.08239700374531835, 0.07865168539325842, 0.09737827715355805, 0.0898876404494382, 0.0898876404494382, 0.0898876404494382, 0.0898876404494382, 0.08614232209737828, 0.06741573033707865, 0.06741573033707865, 0.06367041198501873, 0.056179775280898875, 0.056179775280898875, 0.04868913857677903, 0.04868913857677903, 0.04868913857677903, 0.052434456928838954, 0.052434456928838954, 0.0449438202247191, 0.0449438202247191, 0.04119850187265917, 0.04119850187265917, 0.04868913857677903, 0.04868913857677903, 0.04119850187265917, 0.033707865168539325, 0.947565543071161, 0.03745318352059925, 0.03745318352059925, 0.033707865168539325, 0.03745318352059925, 0.03745318352059925, 0.04119850187265917, 0.04119850187265917, 0.04119850187265917, 0.04119850187265917, 0.04119850187265917, 0.0449438202247191, 0.0449438202247191, 0.2958801498127341, 0.3445692883895131, 0.39325842696629215, 0.43820224719101125, 0.4606741573033708, 0.9176029962546817, 0.9176029962546817, 0.9213483146067416, 0.9325842696629213, 0.9325842696629213, 0.9438202247191011, 0.947565543071161, 0.9438202247191011, 0.9400749063670412, 0.9325842696629213, 0.9250936329588015, 0.9213483146067416, 0.9176029962546817, 0.9176029962546817, 0.8651685393258427, 0.8239700374531835, 0.8838951310861424, 0.9063670411985019, 0.9250936329588015, 0.9138576779026217, 0.9026217228464419, 0.8801498127340824, 0.8127340823970037, 0.797752808988764, 0.7940074906367042, 0.7715355805243446, 0.7528089887640449, 0.7078651685393258, 0.6629213483146067, 0.6292134831460674, 0.5430711610486891, 0.5243445692883895, 0.45692883895131087, 0.41198501872659177, 0.3258426966292135, 0.18726591760299627, 0.14606741573033707, 0.09363295880149813, 0.06367041198501873, 0.03745318352059925, 0.0299625468164794, 0.0299625468164794, 0.02247191011235955, 0.02247191011235955, 0.02247191011235955, 0.02247191011235955, 0.02247191011235955, 0.02247191011235955, 0.02247191011235955, 0.02247191011235955, 0.02247191011235955, 0.02247191011235955, 0.02247191011235955, 0.02247191011235955, 0.02247191011235955, 0.02247191011235955, 0.0299625468164794, 0.9400749063670412, 0.0299625468164794, 0.0299625468164794, 0.0299625468164794, 0.898876404494382, 0.0299625468164794, 0.0299625468164794, 0.0299625468164794, 0.033707865168539325, 0.04868913857677903, 0.03745318352059925, 0.0449438202247191, 0.48314606741573035, 0.11610486891385768, 0.04119850187265917, 0.0449438202247191, 0.0449438202247191, 0.04119850187265917, 0.0449438202247191, 0.0449438202247191, 0.04868913857677903, 0.04868913857677903, 0.04868913857677903, 0.04868913857677903, 0.04868913857677903, 0.052434456928838954, 0.052434456928838954, 0.850187265917603, 0.9250936329588015, 0.9363295880149812, 0.947565543071161, 0.9438202247191011, 0.9325842696629213, 0.8951310861423221, 0.846441947565543, 0.06367041198501873, 0.0749063670411985, 0.9400749063670412, 0.056179775280898875, 0.052434456928838954, 0.056179775280898875, 0.056179775280898875, 0.0599250936329588, 0.0599250936329588, 0.06367041198501873, 0.06367041198501873, 0.06741573033707865, 0.06741573033707865, 0.06367041198501873, 0.06367041198501873, 0.06367041198501873, 0.06741573033707865, 0.06741573033707865, 0.06741573033707865, 0.07116104868913857, 0.0749063670411985, 0.08239700374531835, 0.08614232209737828, 0.0898876404494382, 0.0898876404494382, 0.10112359550561797, 0.10486891385767791, 0.10861423220973783, 0.10861423220973783, 0.13108614232209737], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF3400.gap.json b/pfam_gap_rates/DUF3400.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..53136532c4d726a30657af22e094dbbe6e94828e
--- /dev/null
+++ b/pfam_gap_rates/DUF3400.gap.json
@@ -0,0 +1 @@
+{"family": "DUF3400", "n_seqs": 123, "length": 48, "gap_rates": [0.17073170731707318, 0.008130081300813009, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.7479674796747967, 0.7479674796747967, 0.7235772357723578, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.008130081300813009, 0.008130081300813009], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF3412.gap.json b/pfam_gap_rates/DUF3412.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..9e0dd2a68bf73247ee13fb3e8495ae507c8e194c
--- /dev/null
+++ b/pfam_gap_rates/DUF3412.gap.json
@@ -0,0 +1 @@
+{"family": "DUF3412", "n_seqs": 138, "length": 122, "gap_rates": [0.32608695652173914, 0.07971014492753623, 0.028985507246376812, 0.014492753623188406, 0.014492753623188406, 0.014492753623188406, 0.014492753623188406, 0.014492753623188406, 0.014492753623188406, 0.014492753623188406, 0.014492753623188406, 0.014492753623188406, 0.014492753623188406, 0.014492753623188406, 0.014492753623188406, 0.014492753623188406, 0.014492753623188406, 0.014492753623188406, 0.014492753623188406, 0.014492753623188406, 0.014492753623188406, 0.014492753623188406, 0.014492753623188406, 0.014492753623188406, 0.014492753623188406, 0.014492753623188406, 0.014492753623188406, 0.014492753623188406, 0.014492753623188406, 0.014492753623188406, 0.014492753623188406, 0.014492753623188406, 0.014492753623188406, 0.014492753623188406, 0.014492753623188406, 0.014492753623188406, 0.014492753623188406, 0.014492753623188406, 0.014492753623188406, 0.014492753623188406, 0.014492753623188406, 0.014492753623188406, 0.014492753623188406, 0.014492753623188406, 0.014492753623188406, 0.014492753623188406, 0.014492753623188406, 0.014492753623188406, 0.021739130434782608, 0.021739130434782608, 0.021739130434782608, 0.021739130434782608, 0.021739130434782608, 0.021739130434782608, 0.021739130434782608, 0.021739130434782608, 0.021739130434782608, 0.021739130434782608, 0.021739130434782608, 0.021739130434782608, 0.021739130434782608, 0.021739130434782608, 0.021739130434782608, 0.021739130434782608, 0.021739130434782608, 0.021739130434782608, 0.021739130434782608, 0.021739130434782608, 0.021739130434782608, 0.021739130434782608, 0.021739130434782608, 0.021739130434782608, 0.036231884057971016, 0.036231884057971016, 0.036231884057971016, 0.036231884057971016, 0.036231884057971016, 0.036231884057971016, 0.036231884057971016, 0.036231884057971016, 0.036231884057971016, 0.036231884057971016, 0.036231884057971016, 0.028985507246376812, 0.028985507246376812, 0.028985507246376812, 0.036231884057971016, 0.036231884057971016, 0.036231884057971016, 0.036231884057971016, 0.036231884057971016, 0.036231884057971016, 0.036231884057971016, 0.036231884057971016, 0.036231884057971016, 0.036231884057971016, 0.036231884057971016, 0.043478260869565216, 0.036231884057971016, 0.036231884057971016, 0.036231884057971016, 0.036231884057971016, 0.036231884057971016, 0.036231884057971016, 0.036231884057971016, 0.036231884057971016, 0.036231884057971016, 0.036231884057971016, 0.043478260869565216, 0.036231884057971016, 0.8260869565217391, 0.10144927536231885, 0.057971014492753624, 0.036231884057971016, 0.036231884057971016, 0.036231884057971016, 0.036231884057971016, 0.036231884057971016, 0.036231884057971016, 0.036231884057971016, 0.050724637681159424, 0.5362318840579711], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF3437.gap.json b/pfam_gap_rates/DUF3437.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d13b57d75303914566d125cba40b284d234bb7df
--- /dev/null
+++ b/pfam_gap_rates/DUF3437.gap.json
@@ -0,0 +1 @@
+{"family": "DUF3437", "n_seqs": 343, "length": 93, "gap_rates": [0.5014577259475219, 0.20116618075801748, 0.10204081632653061, 0.052478134110787174, 0.037900874635568516, 0.03206997084548105, 0.03206997084548105, 0.029154518950437316, 0.029154518950437316, 0.029154518950437316, 0.029154518950437316, 0.029154518950437316, 0.029154518950437316, 0.029154518950437316, 0.029154518950437316, 0.029154518950437316, 0.026239067055393587, 0.026239067055393587, 0.026239067055393587, 0.026239067055393587, 0.026239067055393587, 0.026239067055393587, 0.7434402332361516, 0.7376093294460642, 0.023323615160349854, 0.023323615160349854, 0.023323615160349854, 0.023323615160349854, 0.023323615160349854, 0.023323615160349854, 0.023323615160349854, 0.02040816326530612, 0.02040816326530612, 0.9183673469387755, 0.02040816326530612, 0.02040816326530612, 0.02040816326530612, 0.9387755102040817, 0.02040816326530612, 0.026239067055393587, 0.026239067055393587, 0.026239067055393587, 0.026239067055393587, 0.023323615160349854, 0.6647230320699709, 0.04956268221574344, 0.043731778425655975, 0.043731778425655975, 0.04081632653061224, 0.04664723032069971, 0.043731778425655975, 0.043731778425655975, 0.04664723032069971, 0.043731778425655975, 0.043731778425655975, 0.04664723032069971, 0.04664723032069971, 0.04664723032069971, 0.04664723032069971, 0.04664723032069971, 0.052478134110787174, 0.052478134110787174, 0.061224489795918366, 0.052478134110787174, 0.052478134110787174, 0.04956268221574344, 0.04956268221574344, 0.052478134110787174, 0.8950437317784257, 0.052478134110787174, 0.05830903790087463, 0.061224489795918366, 0.06997084548104957, 0.0728862973760933, 0.06997084548104957, 0.06997084548104957, 0.06997084548104957, 0.07580174927113703, 0.06997084548104957, 0.06997084548104957, 0.0728862973760933, 0.08454810495626822, 0.08454810495626822, 0.08746355685131195, 0.08454810495626822, 0.3877551020408163, 0.10204081632653061, 0.09912536443148688, 0.09912536443148688, 0.09912536443148688, 0.09912536443148688, 0.12536443148688048, 0.22157434402332363], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF3447.gap.json b/pfam_gap_rates/DUF3447.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a128a19ea24dc881bf586b6477392b6035f46551
--- /dev/null
+++ b/pfam_gap_rates/DUF3447.gap.json
@@ -0,0 +1 @@
+{"family": "DUF3447", "n_seqs": 1233, "length": 79, "gap_rates": [0.3771289537712895, 0.29278183292781834, 0.20113544201135442, 0.15571776155717762, 0.137875101378751, 0.12652068126520682, 0.12003244120032441, 0.11759935117599352, 0.1111111111111111, 0.10867802108678021, 0.10624493106244931, 0.10624493106244931, 0.10462287104622871, 0.10462287104622871, 0.10462287104622871, 0.10462287104622871, 0.10381184103811841, 0.1030008110300081, 0.1030008110300081, 0.1030008110300081, 0.10218978102189781, 0.042984590429845905, 0.042984590429845905, 0.04460665044606651, 0.04460665044606651, 0.04460665044606651, 0.043795620437956206, 0.054339010543390104, 0.051094890510948905, 0.047039740470397405, 0.04460665044606651, 0.046228710462287104, 0.054339010543390104, 0.05190592051905921, 0.05271695052716951, 0.023519870235198703, 0.023519870235198703, 0.023519870235198703, 0.024330900243309004, 0.025141930251419302, 0.023519870235198703, 0.025141930251419302, 0.028386050283860504, 0.028386050283860504, 0.027575020275750203, 0.027575020275750203, 0.028386050283860504, 0.029197080291970802, 0.031630170316301706, 0.031630170316301706, 0.0340632603406326, 0.032441200324412, 0.034874290348742905, 0.038929440389294405, 0.9359286293592863, 0.9237631792376317, 0.047850770478507706, 0.042984590429845905, 0.047039740470397405, 0.072992700729927, 0.08110300081103, 0.0665044606650446, 0.9497161394971614, 0.06001622060016221, 0.06163828061638281, 0.059205190592051905, 0.06082725060827251, 0.06163828061638281, 0.0689375506893755, 0.072992700729927, 0.07218167072181671, 0.07380373073803731, 0.07542579075425791, 0.08353609083536091, 0.09651257096512571, 0.10786699107866991, 0.12408759124087591, 0.17274939172749393, 0.36982968369829683], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF3464.gap.json b/pfam_gap_rates/DUF3464.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c616d5cda0609b079b21aa0fe05a554fccd10e9a
--- /dev/null
+++ b/pfam_gap_rates/DUF3464.gap.json
@@ -0,0 +1 @@
+{"family": "DUF3464", "n_seqs": 133, "length": 174, "gap_rates": [0.7518796992481203, 0.706766917293233, 0.6616541353383458, 0.6390977443609023, 0.631578947368421, 0.6240601503759399, 0.6090225563909775, 0.6015037593984962, 0.6015037593984962, 0.5864661654135338, 0.5714285714285714, 0.5338345864661654, 0.5037593984962406, 0.5037593984962406, 0.42105263157894735, 0.8646616541353384, 0.8796992481203008, 0.8947368421052632, 0.9097744360902256, 0.924812030075188, 0.9473684210526315, 0.9473684210526315, 0.9097744360902256, 0.9022556390977443, 0.8947368421052632, 0.8796992481203008, 0.8646616541353384, 0.3609022556390977, 0.3533834586466165, 0.3458646616541353, 0.3308270676691729, 0.3157894736842105, 0.3082706766917293, 0.2857142857142857, 0.2706766917293233, 0.2706766917293233, 0.2556390977443609, 0.22556390977443608, 0.22556390977443608, 0.2556390977443609, 0.24060150375939848, 0.24060150375939848, 0.2631578947368421, 0.706766917293233, 0.46616541353383456, 0.3533834586466165, 0.3007518796992481, 0.2706766917293233, 0.22556390977443608, 0.18796992481203006, 0.17293233082706766, 0.15037593984962405, 0.12781954887218044, 0.11278195488721804, 0.10526315789473684, 0.10526315789473684, 0.12030075187969924, 0.12781954887218044, 0.14285714285714285, 0.12030075187969924, 0.12030075187969924, 0.06766917293233082, 0.8646616541353384, 0.8721804511278195, 0.8872180451127819, 0.8947368421052632, 0.9323308270676691, 0.9473684210526315, 0.9473684210526315, 0.9022556390977443, 0.8947368421052632, 0.8796992481203008, 0.8721804511278195, 0.849624060150376, 0.05263157894736842, 0.05263157894736842, 0.05263157894736842, 0.05263157894736842, 0.05263157894736842, 0.05263157894736842, 0.05263157894736842, 0.05263157894736842, 0.03759398496240601, 0.03759398496240601, 0.03759398496240601, 0.03759398496240601, 0.03759398496240601, 0.045112781954887216, 0.06015037593984962, 0.06015037593984962, 0.06766917293233082, 0.06015037593984962, 0.045112781954887216, 0.03759398496240601, 0.045112781954887216, 0.03759398496240601, 0.03759398496240601, 0.03759398496240601, 0.03007518796992481, 0.03007518796992481, 0.03007518796992481, 0.03007518796992481, 0.022556390977443608, 0.022556390977443608, 0.022556390977443608, 0.022556390977443608, 0.022556390977443608, 0.022556390977443608, 0.03759398496240601, 0.03007518796992481, 0.045112781954887216, 0.03759398496240601, 0.03759398496240601, 0.03759398496240601, 0.03759398496240601, 0.022556390977443608, 0.022556390977443608, 0.022556390977443608, 0.022556390977443608, 0.022556390977443608, 0.022556390977443608, 0.022556390977443608, 0.022556390977443608, 0.015037593984962405, 0.015037593984962405, 0.015037593984962405, 0.015037593984962405, 0.015037593984962405, 0.015037593984962405, 0.015037593984962405, 0.015037593984962405, 0.015037593984962405, 0.015037593984962405, 0.015037593984962405, 0.015037593984962405, 0.015037593984962405, 0.015037593984962405, 0.015037593984962405, 0.015037593984962405, 0.022556390977443608, 0.022556390977443608, 0.022556390977443608, 0.022556390977443608, 0.022556390977443608, 0.022556390977443608, 0.06766917293233082, 0.022556390977443608, 0.03007518796992481, 0.06015037593984962, 0.022556390977443608, 0.022556390977443608, 0.022556390977443608, 0.022556390977443608, 0.022556390977443608, 0.022556390977443608, 0.022556390977443608, 0.022556390977443608, 0.022556390977443608, 0.022556390977443608, 0.022556390977443608, 0.022556390977443608, 0.022556390977443608, 0.022556390977443608, 0.03007518796992481, 0.03007518796992481, 0.03007518796992481, 0.3308270676691729, 0.3533834586466165, 0.38345864661654133, 0.18045112781954886, 0.24060150375939848, 0.2932330827067669, 0.6466165413533834, 0.9097744360902256], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF3490.gap.json b/pfam_gap_rates/DUF3490.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..4546042bbebf9fe3707adaeea256bfd045e0c675
--- /dev/null
+++ b/pfam_gap_rates/DUF3490.gap.json
@@ -0,0 +1 @@
+{"family": "DUF3490", "n_seqs": 177, "length": 167, "gap_rates": [0.3559322033898305, 0.05649717514124294, 0.04519774011299435, 0.04519774011299435, 0.04519774011299435, 0.04519774011299435, 0.04519774011299435, 0.03954802259887006, 0.03954802259887006, 0.03954802259887006, 0.03954802259887006, 0.03954802259887006, 0.03954802259887006, 0.03954802259887006, 0.03954802259887006, 0.03954802259887006, 0.03954802259887006, 0.03954802259887006, 0.03954802259887006, 0.03954802259887006, 0.03954802259887006, 0.03954802259887006, 0.03954802259887006, 0.03954802259887006, 0.03954802259887006, 0.03954802259887006, 0.04519774011299435, 0.04519774011299435, 0.04519774011299435, 0.05084745762711865, 0.04519774011299435, 0.05649717514124294, 0.05084745762711865, 0.05084745762711865, 0.05649717514124294, 0.05649717514124294, 0.05084745762711865, 0.05084745762711865, 0.05084745762711865, 0.05084745762711865, 0.05084745762711865, 0.04519774011299435, 0.04519774011299435, 0.03954802259887006, 0.03954802259887006, 0.03954802259887006, 0.03954802259887006, 0.03954802259887006, 0.03389830508474576, 0.03389830508474576, 0.03389830508474576, 0.02824858757062147, 0.02824858757062147, 0.03389830508474576, 0.03954802259887006, 0.04519774011299435, 0.11299435028248588, 0.12994350282485875, 0.22598870056497175, 0.23728813559322035, 0.15819209039548024, 0.5536723163841808, 0.7288135593220338, 0.9265536723163842, 0.5706214689265536, 0.536723163841808, 0.10734463276836158, 0.096045197740113, 0.0903954802259887, 0.1016949152542373, 0.096045197740113, 0.0847457627118644, 0.0847457627118644, 0.07909604519774012, 0.07344632768361582, 0.07909604519774012, 0.07909604519774012, 0.07909604519774012, 0.07909604519774012, 0.0847457627118644, 0.0847457627118644, 0.0847457627118644, 0.0847457627118644, 0.0847457627118644, 0.0847457627118644, 0.0847457627118644, 0.0903954802259887, 0.0903954802259887, 0.0903954802259887, 0.0847457627118644, 0.0847457627118644, 0.07909604519774012, 0.0903954802259887, 0.07909604519774012, 0.07909604519774012, 0.07909604519774012, 0.07909604519774012, 0.07909604519774012, 0.07909604519774012, 0.07909604519774012, 0.07909604519774012, 0.07909604519774012, 0.07909604519774012, 0.07909604519774012, 0.07344632768361582, 0.07344632768361582, 0.07344632768361582, 0.07344632768361582, 0.07909604519774012, 0.07909604519774012, 0.07909604519774012, 0.0847457627118644, 0.0847457627118644, 0.0847457627118644, 0.0847457627118644, 0.0847457627118644, 0.0847457627118644, 0.0847457627118644, 0.0847457627118644, 0.0847457627118644, 0.0847457627118644, 0.0847457627118644, 0.0847457627118644, 0.0903954802259887, 0.0903954802259887, 0.096045197740113, 0.096045197740113, 0.096045197740113, 0.1016949152542373, 0.2824858757062147, 0.096045197740113, 0.1016949152542373, 0.1016949152542373, 0.10734463276836158, 0.11299435028248588, 0.11299435028248588, 0.11299435028248588, 0.11299435028248588, 0.11299435028248588, 0.11299435028248588, 0.11299435028248588, 0.11299435028248588, 0.11299435028248588, 0.11864406779661017, 0.11864406779661017, 0.12429378531073447, 0.12429378531073447, 0.12429378531073447, 0.12429378531073447, 0.12994350282485875, 0.12994350282485875, 0.13559322033898305, 0.9322033898305084, 0.12994350282485875, 0.12994350282485875, 0.12994350282485875, 0.13559322033898305, 0.14124293785310735, 0.14124293785310735, 0.14124293785310735, 0.14689265536723164, 0.14689265536723164, 0.14689265536723164, 0.14689265536723164, 0.15254237288135594, 0.192090395480226, 0.7966101694915254], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF3492.gap.json b/pfam_gap_rates/DUF3492.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ce513836cab4018f544f97f114fed54050dd460c
--- /dev/null
+++ b/pfam_gap_rates/DUF3492.gap.json
@@ -0,0 +1 @@
+{"family": "DUF3492", "n_seqs": 154, "length": 326, "gap_rates": [0.37012987012987014, 0.14935064935064934, 0.12987012987012986, 0.12337662337662338, 0.12337662337662338, 0.11688311688311688, 0.11688311688311688, 0.11038961038961038, 0.05844155844155844, 0.05844155844155844, 0.05844155844155844, 0.05844155844155844, 0.05844155844155844, 0.05844155844155844, 0.05844155844155844, 0.05844155844155844, 0.05844155844155844, 0.05844155844155844, 0.05844155844155844, 0.05844155844155844, 0.045454545454545456, 0.03896103896103896, 0.03896103896103896, 0.03896103896103896, 0.03896103896103896, 0.03896103896103896, 0.03896103896103896, 0.03896103896103896, 0.025974025974025976, 0.032467532467532464, 0.025974025974025976, 0.025974025974025976, 0.025974025974025976, 0.025974025974025976, 0.025974025974025976, 0.025974025974025976, 0.025974025974025976, 0.032467532467532464, 0.032467532467532464, 0.045454545454545456, 0.045454545454545456, 0.032467532467532464, 0.05844155844155844, 0.09090909090909091, 0.05844155844155844, 0.2987012987012987, 0.15584415584415584, 0.032467532467532464, 0.032467532467532464, 0.032467532467532464, 0.032467532467532464, 0.025974025974025976, 0.025974025974025976, 0.025974025974025976, 0.025974025974025976, 0.025974025974025976, 0.025974025974025976, 0.05194805194805195, 0.032467532467532464, 0.03896103896103896, 0.032467532467532464, 0.032467532467532464, 0.032467532467532464, 0.032467532467532464, 0.032467532467532464, 0.032467532467532464, 0.032467532467532464, 0.032467532467532464, 0.8961038961038961, 0.9090909090909091, 0.922077922077922, 0.9155844155844156, 0.9025974025974026, 0.8961038961038961, 0.08441558441558442, 0.12337662337662338, 0.3181818181818182, 0.2857142857142857, 0.2727272727272727, 0.2857142857142857, 0.35714285714285715, 0.525974025974026, 0.8116883116883117, 0.8636363636363636, 0.8766233766233766, 0.9155844155844156, 0.9415584415584416, 0.948051948051948, 0.9285714285714286, 0.8961038961038961, 0.8766233766233766, 0.8311688311688312, 0.7922077922077922, 0.17532467532467533, 0.12987012987012986, 0.09090909090909091, 0.06493506493506493, 0.05844155844155844, 0.05844155844155844, 0.05844155844155844, 0.05844155844155844, 0.05844155844155844, 0.05194805194805195, 0.05194805194805195, 0.05194805194805195, 0.05844155844155844, 0.05844155844155844, 0.05844155844155844, 0.05844155844155844, 0.05844155844155844, 0.05844155844155844, 0.06493506493506493, 0.06493506493506493, 0.06493506493506493, 0.06493506493506493, 0.09740259740259741, 0.2987012987012987, 0.3116883116883117, 0.7142857142857143, 0.8051948051948052, 0.8181818181818182, 0.9090909090909091, 0.922077922077922, 0.8831168831168831, 0.8051948051948052, 0.7987012987012987, 0.6363636363636364, 0.18831168831168832, 0.11038961038961038, 0.07142857142857142, 0.07142857142857142, 0.06493506493506493, 0.05844155844155844, 0.09740259740259741, 0.13636363636363635, 0.11038961038961038, 0.1038961038961039, 0.07792207792207792, 0.06493506493506493, 0.06493506493506493, 0.07792207792207792, 0.08441558441558442, 0.09090909090909091, 0.8766233766233766, 0.4935064935064935, 0.16233766233766234, 0.07792207792207792, 0.06493506493506493, 0.06493506493506493, 0.06493506493506493, 0.06493506493506493, 0.06493506493506493, 0.06493506493506493, 0.06493506493506493, 0.06493506493506493, 0.06493506493506493, 0.06493506493506493, 0.05844155844155844, 0.948051948051948, 0.948051948051948, 0.948051948051948, 0.948051948051948, 0.05844155844155844, 0.07142857142857142, 0.07792207792207792, 0.07792207792207792, 0.08441558441558442, 0.07792207792207792, 0.07142857142857142, 0.08441558441558442, 0.08441558441558442, 0.07792207792207792, 0.11038961038961038, 0.07142857142857142, 0.7662337662337663, 0.7727272727272727, 0.8961038961038961, 0.9285714285714286, 0.948051948051948, 0.935064935064935, 0.922077922077922, 0.7792207792207793, 0.7727272727272727, 0.7597402597402597, 0.06493506493506493, 0.05844155844155844, 0.05844155844155844, 0.05844155844155844, 0.05844155844155844, 0.06493506493506493, 0.05844155844155844, 0.05844155844155844, 0.06493506493506493, 0.05844155844155844, 0.05844155844155844, 0.05194805194805195, 0.05194805194805195, 0.05194805194805195, 0.05194805194805195, 0.05194805194805195, 0.05194805194805195, 0.05194805194805195, 0.05194805194805195, 0.05194805194805195, 0.05194805194805195, 0.19480519480519481, 0.6818181818181818, 0.9285714285714286, 0.9285714285714286, 0.922077922077922, 0.6688311688311688, 0.05194805194805195, 0.05194805194805195, 0.05194805194805195, 0.05194805194805195, 0.045454545454545456, 0.045454545454545456, 0.045454545454545456, 0.045454545454545456, 0.03896103896103896, 0.03896103896103896, 0.03896103896103896, 0.03896103896103896, 0.03896103896103896, 0.03896103896103896, 0.045454545454545456, 0.03896103896103896, 0.03896103896103896, 0.045454545454545456, 0.045454545454545456, 0.045454545454545456, 0.045454545454545456, 0.045454545454545456, 0.045454545454545456, 0.045454545454545456, 0.045454545454545456, 0.045454545454545456, 0.045454545454545456, 0.045454545454545456, 0.045454545454545456, 0.045454545454545456, 0.045454545454545456, 0.045454545454545456, 0.045454545454545456, 0.045454545454545456, 0.045454545454545456, 0.045454545454545456, 0.045454545454545456, 0.045454545454545456, 0.045454545454545456, 0.045454545454545456, 0.045454545454545456, 0.045454545454545456, 0.045454545454545456, 0.045454545454545456, 0.045454545454545456, 0.045454545454545456, 0.045454545454545456, 0.05194805194805195, 0.05844155844155844, 0.05194805194805195, 0.07142857142857142, 0.05844155844155844, 0.05194805194805195, 0.05844155844155844, 0.07142857142857142, 0.07792207792207792, 0.6103896103896104, 0.6103896103896104, 0.6103896103896104, 0.6168831168831169, 0.6233766233766234, 0.9090909090909091, 0.6688311688311688, 0.6233766233766234, 0.6168831168831169, 0.6103896103896104, 0.6103896103896104, 0.6038961038961039, 0.5324675324675324, 0.461038961038961, 0.15584415584415584, 0.08441558441558442, 0.07792207792207792, 0.07142857142857142, 0.07142857142857142, 0.07142857142857142, 0.06493506493506493, 0.05844155844155844, 0.06493506493506493, 0.06493506493506493, 0.06493506493506493, 0.07142857142857142, 0.07142857142857142, 0.07142857142857142, 0.06493506493506493, 0.06493506493506493, 0.08441558441558442, 0.07792207792207792, 0.07792207792207792, 0.05844155844155844, 0.05844155844155844, 0.05844155844155844, 0.05844155844155844, 0.05844155844155844, 0.05844155844155844, 0.05844155844155844, 0.05844155844155844, 0.05844155844155844, 0.05844155844155844, 0.06493506493506493, 0.06493506493506493, 0.06493506493506493, 0.06493506493506493, 0.07142857142857142, 0.07142857142857142, 0.07142857142857142, 0.07142857142857142, 0.07792207792207792, 0.07792207792207792, 0.07792207792207792, 0.07792207792207792, 0.1038961038961039, 0.13636363636363635, 0.22727272727272727, 0.7337662337662337], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF3500.gap.json b/pfam_gap_rates/DUF3500.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c4014ba56a3123be49f5ecfcfdf9ae0f560dda80
--- /dev/null
+++ b/pfam_gap_rates/DUF3500.gap.json
@@ -0,0 +1 @@
+{"family": "DUF3500", "n_seqs": 168, "length": 411, "gap_rates": [0.7916666666666666, 0.5535714285714286, 0.44047619047619047, 0.3392857142857143, 0.27976190476190477, 0.24404761904761904, 0.19642857142857142, 0.19047619047619047, 0.17261904761904762, 0.16666666666666666, 0.1488095238095238, 0.13690476190476192, 0.13095238095238096, 0.13095238095238096, 0.13095238095238096, 0.13690476190476192, 0.13095238095238096, 0.13095238095238096, 0.13095238095238096, 0.13095238095238096, 0.13095238095238096, 0.13095238095238096, 0.125, 0.125, 0.125, 0.125, 0.13095238095238096, 0.13095238095238096, 0.9107142857142857, 0.9464285714285714, 0.7857142857142857, 0.13095238095238096, 0.14285714285714285, 0.125, 0.125, 0.125, 0.125, 0.125, 0.10714285714285714, 0.10714285714285714, 0.1130952380952381, 0.10714285714285714, 0.10119047619047619, 0.10714285714285714, 0.10714285714285714, 0.9464285714285714, 0.8452380952380952, 0.31547619047619047, 0.3869047619047619, 0.23214285714285715, 0.16071428571428573, 0.7976190476190477, 0.1130952380952381, 0.09523809523809523, 0.09523809523809523, 0.08333333333333333, 0.07738095238095238, 0.07738095238095238, 0.07738095238095238, 0.07738095238095238, 0.07738095238095238, 0.07738095238095238, 0.07738095238095238, 0.07738095238095238, 0.07738095238095238, 0.07142857142857142, 0.07142857142857142, 0.07142857142857142, 0.07142857142857142, 0.07142857142857142, 0.07142857142857142, 0.05952380952380952, 0.05952380952380952, 0.05952380952380952, 0.05952380952380952, 0.05952380952380952, 0.05952380952380952, 0.05952380952380952, 0.06547619047619048, 0.05952380952380952, 0.06547619047619048, 0.05952380952380952, 0.05952380952380952, 0.05952380952380952, 0.05952380952380952, 0.05952380952380952, 0.05952380952380952, 0.05952380952380952, 0.05952380952380952, 0.05952380952380952, 0.06547619047619048, 0.06547619047619048, 0.05952380952380952, 0.06547619047619048, 0.06547619047619048, 0.08928571428571429, 0.25595238095238093, 0.375, 0.3869047619047619, 0.40476190476190477, 0.43452380952380953, 0.5714285714285714, 0.8273809523809523, 0.9047619047619048, 0.9107142857142857, 0.9107142857142857, 0.875, 0.7976190476190477, 0.4642857142857143, 0.40476190476190477, 0.39285714285714285, 0.38095238095238093, 0.3630952380952381, 0.23809523809523808, 0.05357142857142857, 0.7380952380952381, 0.7380952380952381, 0.75, 0.7619047619047619, 0.7916666666666666, 0.8095238095238095, 0.7976190476190477, 0.7916666666666666, 0.7619047619047619, 0.7380952380952381, 0.7380952380952381, 0.7380952380952381, 0.05357142857142857, 0.05952380952380952, 0.05357142857142857, 0.05357142857142857, 0.047619047619047616, 0.047619047619047616, 0.047619047619047616, 0.047619047619047616, 0.047619047619047616, 0.15476190476190477, 0.047619047619047616, 0.9464285714285714, 0.047619047619047616, 0.047619047619047616, 0.047619047619047616, 0.047619047619047616, 0.047619047619047616, 0.047619047619047616, 0.047619047619047616, 0.047619047619047616, 0.047619047619047616, 0.047619047619047616, 0.047619047619047616, 0.047619047619047616, 0.047619047619047616, 0.047619047619047616, 0.047619047619047616, 0.047619047619047616, 0.047619047619047616, 0.047619047619047616, 0.047619047619047616, 0.047619047619047616, 0.6130952380952381, 0.047619047619047616, 0.05357142857142857, 0.05357142857142857, 0.10119047619047619, 0.05357142857142857, 0.05357142857142857, 0.05952380952380952, 0.05952380952380952, 0.05952380952380952, 0.05952380952380952, 0.05952380952380952, 0.05952380952380952, 0.05952380952380952, 0.05952380952380952, 0.05952380952380952, 0.06547619047619048, 0.06547619047619048, 0.9345238095238095, 0.13690476190476192, 0.14285714285714285, 0.16071428571428573, 0.10714285714285714, 0.08333333333333333, 0.07142857142857142, 0.06547619047619048, 0.05952380952380952, 0.9345238095238095, 0.06547619047619048, 0.05357142857142857, 0.05357142857142857, 0.05357142857142857, 0.05357142857142857, 0.05357142857142857, 0.047619047619047616, 0.047619047619047616, 0.047619047619047616, 0.047619047619047616, 0.047619047619047616, 0.047619047619047616, 0.047619047619047616, 0.041666666666666664, 0.041666666666666664, 0.041666666666666664, 0.041666666666666664, 0.03571428571428571, 0.03571428571428571, 0.03571428571428571, 0.041666666666666664, 0.041666666666666664, 0.03571428571428571, 0.03571428571428571, 0.03571428571428571, 0.03571428571428571, 0.041666666666666664, 0.047619047619047616, 0.041666666666666664, 0.041666666666666664, 0.05357142857142857, 0.05357142857142857, 0.047619047619047616, 0.6190476190476191, 0.6488095238095238, 0.6488095238095238, 0.6547619047619048, 0.6547619047619048, 0.6607142857142857, 0.6607142857142857, 0.9404761904761905, 0.9464285714285714, 0.9464285714285714, 0.9464285714285714, 0.9404761904761905, 0.9166666666666666, 0.6607142857142857, 0.6607142857142857, 0.6547619047619048, 0.6547619047619048, 0.6488095238095238, 0.6488095238095238, 0.6011904761904762, 0.047619047619047616, 0.05357142857142857, 0.05357142857142857, 0.047619047619047616, 0.047619047619047616, 0.05357142857142857, 0.05952380952380952, 0.06547619047619048, 0.06547619047619048, 0.07738095238095238, 0.08333333333333333, 0.8392857142857143, 0.8988095238095238, 0.8988095238095238, 0.9047619047619048, 0.9107142857142857, 0.9345238095238095, 0.9404761904761905, 0.9404761904761905, 0.9404761904761905, 0.9404761904761905, 0.9404761904761905, 0.9404761904761905, 0.9404761904761905, 0.9404761904761905, 0.9464285714285714, 0.9464285714285714, 0.9464285714285714, 0.9464285714285714, 0.9464285714285714, 0.9464285714285714, 0.9464285714285714, 0.9464285714285714, 0.9464285714285714, 0.9404761904761905, 0.9404761904761905, 0.9404761904761905, 0.9404761904761905, 0.9404761904761905, 0.9404761904761905, 0.9404761904761905, 0.9404761904761905, 0.9404761904761905, 0.9226190476190477, 0.9047619047619048, 0.9047619047619048, 0.8988095238095238, 0.8988095238095238, 0.6369047619047619, 0.06547619047619048, 0.05357142857142857, 0.047619047619047616, 0.047619047619047616, 0.047619047619047616, 0.047619047619047616, 0.047619047619047616, 0.05357142857142857, 0.05357142857142857, 0.05357142857142857, 0.047619047619047616, 0.047619047619047616, 0.047619047619047616, 0.047619047619047616, 0.047619047619047616, 0.047619047619047616, 0.047619047619047616, 0.047619047619047616, 0.047619047619047616, 0.047619047619047616, 0.047619047619047616, 0.047619047619047616, 0.047619047619047616, 0.047619047619047616, 0.047619047619047616, 0.047619047619047616, 0.047619047619047616, 0.047619047619047616, 0.047619047619047616, 0.05357142857142857, 0.05357142857142857, 0.05357142857142857, 0.05357142857142857, 0.05357142857142857, 0.05357142857142857, 0.047619047619047616, 0.06547619047619048, 0.07142857142857142, 0.05952380952380952, 0.05357142857142857, 0.05357142857142857, 0.05357142857142857, 0.041666666666666664, 0.05357142857142857, 0.05357142857142857, 0.047619047619047616, 0.9166666666666666, 0.6607142857142857, 0.05952380952380952, 0.05952380952380952, 0.041666666666666664, 0.041666666666666664, 0.041666666666666664, 0.041666666666666664, 0.041666666666666664, 0.041666666666666664, 0.041666666666666664, 0.041666666666666664, 0.041666666666666664, 0.047619047619047616, 0.047619047619047616, 0.047619047619047616, 0.8511904761904762, 0.9047619047619048, 0.8630952380952381, 0.7559523809523809, 0.047619047619047616, 0.047619047619047616, 0.047619047619047616, 0.047619047619047616, 0.047619047619047616, 0.047619047619047616, 0.047619047619047616, 0.047619047619047616, 0.047619047619047616, 0.047619047619047616, 0.047619047619047616, 0.047619047619047616, 0.047619047619047616, 0.047619047619047616, 0.047619047619047616, 0.047619047619047616, 0.05357142857142857, 0.05357142857142857, 0.06547619047619048, 0.07142857142857142, 0.1488095238095238, 0.15476190476190477, 0.6607142857142857, 0.6607142857142857, 0.6547619047619048, 0.5059523809523809, 0.13690476190476192, 0.43452380952380953, 0.5178571428571429, 0.8630952380952381, 0.875, 0.9464285714285714, 0.9464285714285714, 0.9166666666666666, 0.8630952380952381, 0.8333333333333334, 0.4583333333333333, 0.3869047619047619, 0.13095238095238096, 0.07738095238095238, 0.07738095238095238, 0.08333333333333333, 0.08333333333333333, 0.09523809523809523, 0.125, 0.14285714285714285, 0.14285714285714285, 0.14285714285714285, 0.14285714285714285, 0.1488095238095238, 0.625, 0.1488095238095238, 0.16071428571428573, 0.16071428571428573, 0.19047619047619047, 0.5357142857142857], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF3512.gap.json b/pfam_gap_rates/DUF3512.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..abc85fe3fc444236eb022da74408f1ddad6c54a3
--- /dev/null
+++ b/pfam_gap_rates/DUF3512.gap.json
@@ -0,0 +1 @@
+{"family": "DUF3512", "n_seqs": 130, "length": 284, "gap_rates": [0.8, 0.7384615384615385, 0.7, 0.676923076923077, 0.6307692307692307, 0.5923076923076923, 0.5307692307692308, 0.5384615384615384, 0.5230769230769231, 0.46153846153846156, 0.5230769230769231, 0.3923076923076923, 0.36153846153846153, 0.35384615384615387, 0.34615384615384615, 0.34615384615384615, 0.34615384615384615, 0.34615384615384615, 0.35384615384615387, 0.3384615384615385, 0.3384615384615385, 0.8615384615384616, 0.8769230769230769, 0.8538461538461538, 0.3230769230769231, 0.3230769230769231, 0.3230769230769231, 0.3230769230769231, 0.3230769230769231, 0.46153846153846156, 0.46153846153846156, 0.46153846153846156, 0.3076923076923077, 0.3076923076923077, 0.3076923076923077, 0.3, 0.3076923076923077, 0.3076923076923077, 0.3, 0.3, 0.2923076923076923, 0.2846153846153846, 0.2923076923076923, 0.3, 0.3153846153846154, 0.3153846153846154, 0.3076923076923077, 0.3, 0.2846153846153846, 0.8769230769230769, 0.8846153846153846, 0.8923076923076924, 0.8923076923076924, 0.9, 0.9, 0.9, 0.9461538461538461, 0.9076923076923077, 0.9, 0.9, 0.8923076923076924, 0.8923076923076924, 0.8846153846153846, 0.8846153846153846, 0.8769230769230769, 0.2923076923076923, 0.27692307692307694, 0.24615384615384617, 0.25384615384615383, 0.24615384615384617, 0.24615384615384617, 0.23846153846153847, 0.23846153846153847, 0.23076923076923078, 0.36153846153846153, 0.2153846153846154, 0.2153846153846154, 0.2, 0.18461538461538463, 0.18461538461538463, 0.18461538461538463, 0.17692307692307693, 0.17692307692307693, 0.17692307692307693, 0.17692307692307693, 0.17692307692307693, 0.17692307692307693, 0.18461538461538463, 0.2692307692307692, 0.9384615384615385, 0.2230769230769231, 0.47692307692307695, 0.43846153846153846, 0.46153846153846156, 0.6384615384615384, 0.4, 0.5230769230769231, 0.26153846153846155, 0.26153846153846155, 0.23846153846153847, 0.2076923076923077, 0.2076923076923077, 0.2076923076923077, 0.2076923076923077, 0.2076923076923077, 0.2076923076923077, 0.2076923076923077, 0.2153846153846154, 0.2076923076923077, 0.2076923076923077, 0.2076923076923077, 0.2153846153846154, 0.2153846153846154, 0.2076923076923077, 0.2076923076923077, 0.2076923076923077, 0.2076923076923077, 0.3384615384615385, 0.19230769230769232, 0.18461538461538463, 0.17692307692307693, 0.17692307692307693, 0.16923076923076924, 0.16153846153846155, 0.15384615384615385, 0.13846153846153847, 0.13076923076923078, 0.11538461538461539, 0.12307692307692308, 0.08461538461538462, 0.07692307692307693, 0.07692307692307693, 0.2230769230769231, 0.2230769230769231, 0.2230769230769231, 0.2230769230769231, 0.07692307692307693, 0.07692307692307693, 0.07692307692307693, 0.07692307692307693, 0.07692307692307693, 0.07692307692307693, 0.07692307692307693, 0.07692307692307693, 0.07692307692307693, 0.07692307692307693, 0.07692307692307693, 0.07692307692307693, 0.08461538461538462, 0.07692307692307693, 0.07692307692307693, 0.07692307692307693, 0.07692307692307693, 0.06923076923076923, 0.06923076923076923, 0.06923076923076923, 0.06923076923076923, 0.06923076923076923, 0.09230769230769231, 0.09230769230769231, 0.1, 0.1076923076923077, 0.11538461538461539, 0.15384615384615385, 0.23076923076923078, 0.24615384615384617, 0.24615384615384617, 0.24615384615384617, 0.25384615384615383, 0.26153846153846155, 0.3153846153846154, 0.26153846153846155, 0.26153846153846155, 0.26153846153846155, 0.2692307692307692, 0.2692307692307692, 0.2692307692307692, 0.26153846153846155, 0.26153846153846155, 0.26153846153846155, 0.2692307692307692, 0.2692307692307692, 0.2692307692307692, 0.2846153846153846, 0.4846153846153846, 0.2923076923076923, 0.2923076923076923, 0.2923076923076923, 0.2923076923076923, 0.2846153846153846, 0.27692307692307694, 0.2692307692307692, 0.2692307692307692, 0.2692307692307692, 0.27692307692307694, 0.27692307692307694, 0.2692307692307692, 0.2692307692307692, 0.2692307692307692, 0.2692307692307692, 0.2692307692307692, 0.2692307692307692, 0.2692307692307692, 0.27692307692307694, 0.27692307692307694, 0.2846153846153846, 0.2846153846153846, 0.2923076923076923, 0.3, 0.2923076923076923, 0.2923076923076923, 0.2923076923076923, 0.2923076923076923, 0.3153846153846154, 0.3153846153846154, 0.36153846153846153, 0.36923076923076925, 0.4076923076923077, 0.4153846153846154, 0.8, 0.8076923076923077, 0.8153846153846154, 0.8153846153846154, 0.8846153846153846, 0.9153846153846154, 0.9307692307692308, 0.9307692307692308, 0.9384615384615385, 0.9384615384615385, 0.9307692307692308, 0.9307692307692308, 0.9, 0.823076923076923, 0.8153846153846154, 0.8153846153846154, 0.8076923076923077, 0.8, 0.4230769230769231, 0.46153846153846156, 0.46153846153846156, 0.46153846153846156, 0.8692307692307693, 0.6153846153846154, 0.6076923076923076, 0.5153846153846153, 0.8153846153846154, 0.8615384615384616, 0.9153846153846154, 0.9307692307692308, 0.9461538461538461, 0.9230769230769231, 0.8923076923076924, 0.8461538461538461, 0.7692307692307693, 0.5, 0.4461538461538462, 0.4461538461538462, 0.4461538461538462, 0.4307692307692308, 0.4076923076923077, 0.36923076923076925, 0.36923076923076925, 0.36153846153846153, 0.36153846153846153, 0.36153846153846153, 0.36923076923076925, 0.3769230769230769, 0.3769230769230769, 0.3769230769230769, 0.3769230769230769, 0.3769230769230769, 0.3769230769230769, 0.3769230769230769, 0.3769230769230769, 0.3769230769230769, 0.3769230769230769, 0.38461538461538464, 0.4076923076923077, 0.4076923076923077, 0.4153846153846154, 0.4153846153846154, 0.4307692307692308, 0.49230769230769234, 0.7], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF3552.gap.json b/pfam_gap_rates/DUF3552.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..5392f1d8912e03ce4ee96d25aaf724dee7cff30f
--- /dev/null
+++ b/pfam_gap_rates/DUF3552.gap.json
@@ -0,0 +1 @@
+{"family": "DUF3552", "n_seqs": 1339, "length": 202, "gap_rates": [0.6422703510082151, 0.4152352501867065, 0.3084391336818521, 0.26736370425690814, 0.23674383868558627, 0.21882001493651979, 0.20687079910380882, 0.19790888722927558, 0.1882001493651979, 0.18073188946975355, 0.17849141150112025, 0.17027632561613143, 0.17102315160567588, 0.1672890216579537, 0.16280806572068707, 0.16131441374159822, 0.16056758775205376, 0.1590739357729649, 0.15832710978342046, 0.9499626587005228, 0.9477221807318895, 0.15384615384615385, 0.14936519790888722, 0.14488424197162061, 0.140403286034354, 0.13666915608663183, 0.13368185212845407, 0.13741598207617625, 0.13666915608663183, 0.13592233009708737, 0.14189693801344286, 0.15011202389843167, 0.15459297983569828, 0.1463778939507095, 0.14115011202389843, 0.13368185212845407, 0.13368185212845407, 0.11949215832710978, 0.10828976848394324, 0.1053024645257655, 0.10306198655713218, 0.10156833457804332, 0.10306198655713218, 0.10380881254667662, 0.10156833457804332, 0.1157580283793876, 0.1179985063480209, 0.1157580283793876, 0.13069454817027631, 0.12247946228528753, 0.12920089619118746, 0.1277072442120986, 0.10231516056758776, 0.09185959671396565, 0.08140403286034353, 0.07766990291262135, 0.07393577296489919, 0.070201643017177, 0.06572068707991038, 0.06721433905899925, 0.06646751306945482, 0.06572068707991038, 0.06497386109036594, 0.06796116504854369, 0.070201643017177, 0.06945481702763256, 0.07094846900672143, 0.07169529499626587, 0.08065720687079911, 0.07766990291262135, 0.07468259895444361, 0.07094846900672143, 0.060492905153099324, 0.05899925317401045, 0.05675877520537715, 0.05675877520537715, 0.05601194921583271, 0.05526512322628827, 0.05451829723674384, 0.05451829723674384, 0.05526512322628827, 0.05601194921583271, 0.05825242718446602, 0.05675877520537715, 0.05451829723674384, 0.05601194921583271, 0.05451829723674384, 0.05302464525765497, 0.05153099327856609, 0.04779686333084392, 0.04705003734129948, 0.04705003734129948, 0.043315907393577296, 0.04256908140403286, 0.04480955937266617, 0.04555638536221061, 0.04256908140403286, 0.04256908140403286, 0.039581777445855115, 0.037341299477221805, 0.03435399551904406, 0.033607169529499624, 0.03211351755041075, 0.033607169529499624, 0.033607169529499624, 0.03286034353995519, 0.03286034353995519, 0.03211351755041075, 0.029873039581777446, 0.03211351755041075, 0.030619865571321882, 0.03136669156086632, 0.030619865571321882, 0.027632561613144136, 0.02912621359223301, 0.49738610903659447, 0.49738610903659447, 0.49663928304705, 0.4936519790888723, 0.4921583271097834, 0.49290515309932786, 0.4899178491411501, 0.02912621359223301, 0.027632561613144136, 0.0268857356235997, 0.027632561613144136, 0.0268857356235997, 0.028379387602688575, 0.027632561613144136, 0.027632561613144136, 0.027632561613144136, 0.03136669156086632, 0.043315907393577296, 0.041822255414488425, 0.039581777445855115, 0.040328603435399554, 0.038088125466766244, 0.037341299477221805, 0.03286034353995519, 0.019417475728155338, 0.019417475728155338, 0.018670649738610903, 0.018670649738610903, 0.020911127707244213, 0.020911127707244213, 0.020911127707244213, 0.020164301717699777, 0.020164301717699777, 0.020164301717699777, 0.020164301717699777, 0.020164301717699777, 0.020164301717699777, 0.020164301717699777, 0.020164301717699777, 0.019417475728155338, 0.019417475728155338, 0.018670649738610903, 0.018670649738610903, 0.018670649738610903, 0.018670649738610903, 0.018670649738610903, 0.018670649738610903, 0.019417475728155338, 0.019417475728155338, 0.020164301717699777, 0.020164301717699777, 0.019417475728155338, 0.018670649738610903, 0.018670649738610903, 0.018670649738610903, 0.01717699775952203, 0.01717699775952203, 0.01717699775952203, 0.01717699775952203, 0.01717699775952203, 0.016430171769977596, 0.016430171769977596, 0.01717699775952203, 0.01717699775952203, 0.01717699775952203, 0.01717699775952203, 0.01717699775952203, 0.01717699775952203, 0.01717699775952203, 0.01717699775952203, 0.01717699775952203, 0.01717699775952203, 0.01717699775952203, 0.017923823749066467, 0.017923823749066467, 0.018670649738610903, 0.018670649738610903, 0.018670649738610903, 0.018670649738610903, 0.019417475728155338, 0.024645257654966394, 0.027632561613144136, 0.02912621359223301, 0.05003734129947722, 0.08289768483943241, 0.17923823749066467, 0.45108289768483945], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF3554.gap.json b/pfam_gap_rates/DUF3554.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d68cec7e55f12e9d8be7658c4cbcd7fd575c4f6a
--- /dev/null
+++ b/pfam_gap_rates/DUF3554.gap.json
@@ -0,0 +1 @@
+{"family": "DUF3554", "n_seqs": 138, "length": 383, "gap_rates": [0.3188405797101449, 0.11594202898550725, 0.10869565217391304, 0.10144927536231885, 0.10144927536231885, 0.10144927536231885, 0.10144927536231885, 0.10144927536231885, 0.10144927536231885, 0.09420289855072464, 0.09420289855072464, 0.09420289855072464, 0.09420289855072464, 0.09420289855072464, 0.09420289855072464, 0.8985507246376812, 0.09420289855072464, 0.9492753623188406, 0.13768115942028986, 0.13768115942028986, 0.12318840579710146, 0.11594202898550725, 0.09420289855072464, 0.09420289855072464, 0.09420289855072464, 0.10144927536231885, 0.08695652173913043, 0.08695652173913043, 0.08695652173913043, 0.08695652173913043, 0.08695652173913043, 0.08695652173913043, 0.08695652173913043, 0.08695652173913043, 0.08695652173913043, 0.08695652173913043, 0.09420289855072464, 0.08695652173913043, 0.08695652173913043, 0.08695652173913043, 0.08695652173913043, 0.08695652173913043, 0.08695652173913043, 0.08695652173913043, 0.08695652173913043, 0.08695652173913043, 0.09420289855072464, 0.09420289855072464, 0.09420289855072464, 0.09420289855072464, 0.08695652173913043, 0.08695652173913043, 0.08695652173913043, 0.11594202898550725, 0.12318840579710146, 0.13043478260869565, 0.10869565217391304, 0.10869565217391304, 0.10144927536231885, 0.10869565217391304, 0.12318840579710146, 0.2028985507246377, 0.13043478260869565, 0.14492753623188406, 0.12318840579710146, 0.10869565217391304, 0.09420289855072464, 0.09420289855072464, 0.08695652173913043, 0.08695652173913043, 0.08695652173913043, 0.09420289855072464, 0.09420289855072464, 0.09420289855072464, 0.09420289855072464, 0.09420289855072464, 0.09420289855072464, 0.09420289855072464, 0.09420289855072464, 0.10144927536231885, 0.10869565217391304, 0.11594202898550725, 0.10144927536231885, 0.09420289855072464, 0.09420289855072464, 0.09420289855072464, 0.09420289855072464, 0.09420289855072464, 0.09420289855072464, 0.10144927536231885, 0.11594202898550725, 0.14492753623188406, 0.13768115942028986, 0.13768115942028986, 0.13043478260869565, 0.13043478260869565, 0.13043478260869565, 0.13043478260869565, 0.13043478260869565, 0.2246376811594203, 0.4492753623188406, 0.9347826086956522, 0.9492753623188406, 0.6811594202898551, 0.5289855072463768, 0.39855072463768115, 0.2028985507246377, 0.18115942028985507, 0.18840579710144928, 0.2536231884057971, 0.5434782608695652, 0.4492753623188406, 0.15217391304347827, 0.13768115942028986, 0.13768115942028986, 0.13043478260869565, 0.13043478260869565, 0.13043478260869565, 0.13043478260869565, 0.13768115942028986, 0.13768115942028986, 0.13043478260869565, 0.13043478260869565, 0.13043478260869565, 0.13043478260869565, 0.13043478260869565, 0.13043478260869565, 0.13043478260869565, 0.13043478260869565, 0.13043478260869565, 0.13043478260869565, 0.13043478260869565, 0.13043478260869565, 0.13043478260869565, 0.13043478260869565, 0.15217391304347827, 0.13768115942028986, 0.13768115942028986, 0.13043478260869565, 0.13043478260869565, 0.14492753623188406, 0.14492753623188406, 0.4057971014492754, 0.42028985507246375, 0.13768115942028986, 0.13768115942028986, 0.13768115942028986, 0.14492753623188406, 0.14492753623188406, 0.14492753623188406, 0.14492753623188406, 0.14492753623188406, 0.14492753623188406, 0.2463768115942029, 0.1956521739130435, 0.21739130434782608, 0.1956521739130435, 0.2028985507246377, 0.18840579710144928, 0.18840579710144928, 0.2318840579710145, 0.427536231884058, 0.42028985507246375, 0.30434782608695654, 0.30434782608695654, 0.3115942028985507, 0.32608695652173914, 0.2898550724637681, 0.2463768115942029, 0.18840579710144928, 0.16666666666666666, 0.17391304347826086, 0.17391304347826086, 0.18115942028985507, 0.17391304347826086, 0.17391304347826086, 0.18840579710144928, 0.18840579710144928, 0.17391304347826086, 0.17391304347826086, 0.18840579710144928, 0.17391304347826086, 0.17391304347826086, 0.16666666666666666, 0.16666666666666666, 0.16666666666666666, 0.15942028985507245, 0.16666666666666666, 0.15942028985507245, 0.15942028985507245, 0.15942028985507245, 0.15942028985507245, 0.15942028985507245, 0.15942028985507245, 0.15942028985507245, 0.15942028985507245, 0.15942028985507245, 0.15942028985507245, 0.21739130434782608, 0.16666666666666666, 0.15942028985507245, 0.15942028985507245, 0.16666666666666666, 0.16666666666666666, 0.16666666666666666, 0.16666666666666666, 0.16666666666666666, 0.16666666666666666, 0.16666666666666666, 0.16666666666666666, 0.15942028985507245, 0.15942028985507245, 0.15942028985507245, 0.16666666666666666, 0.16666666666666666, 0.16666666666666666, 0.16666666666666666, 0.16666666666666666, 0.16666666666666666, 0.16666666666666666, 0.17391304347826086, 0.18840579710144928, 0.7536231884057971, 0.5362318840579711, 0.34782608695652173, 0.2463768115942029, 0.2246376811594203, 0.21014492753623187, 0.18840579710144928, 0.15217391304347827, 0.15217391304347827, 0.14492753623188406, 0.14492753623188406, 0.14492753623188406, 0.14492753623188406, 0.14492753623188406, 0.14492753623188406, 0.14492753623188406, 0.14492753623188406, 0.14492753623188406, 0.14492753623188406, 0.14492753623188406, 0.4420289855072464, 0.18115942028985507, 0.14492753623188406, 0.13768115942028986, 0.13768115942028986, 0.13768115942028986, 0.13768115942028986, 0.13768115942028986, 0.13768115942028986, 0.13768115942028986, 0.13768115942028986, 0.13768115942028986, 0.13768115942028986, 0.13768115942028986, 0.13768115942028986, 0.13768115942028986, 0.13768115942028986, 0.13768115942028986, 0.13768115942028986, 0.13768115942028986, 0.15942028985507245, 0.15942028985507245, 0.14492753623188406, 0.14492753623188406, 0.15217391304347827, 0.13768115942028986, 0.13768115942028986, 0.13768115942028986, 0.13768115942028986, 0.13768115942028986, 0.13043478260869565, 0.13043478260869565, 0.13768115942028986, 0.13768115942028986, 0.13043478260869565, 0.13043478260869565, 0.13043478260869565, 0.13768115942028986, 0.14492753623188406, 0.13768115942028986, 0.9492753623188406, 0.3188405797101449, 0.2898550724637681, 0.2753623188405797, 0.2318840579710145, 0.21739130434782608, 0.1956521739130435, 0.21014492753623187, 0.2753623188405797, 0.26811594202898553, 0.26811594202898553, 0.26811594202898553, 0.2536231884057971, 0.18840579710144928, 0.1956521739130435, 0.2028985507246377, 0.18840579710144928, 0.2028985507246377, 0.13768115942028986, 0.782608695652174, 0.8043478260869565, 0.8115942028985508, 0.8695652173913043, 0.9492753623188406, 0.927536231884058, 0.8115942028985508, 0.8043478260869565, 0.782608695652174, 0.717391304347826, 0.13768115942028986, 0.13768115942028986, 0.13768115942028986, 0.13043478260869565, 0.13043478260869565, 0.13043478260869565, 0.13043478260869565, 0.13768115942028986, 0.13768115942028986, 0.14492753623188406, 0.5362318840579711, 0.5289855072463768, 0.6376811594202898, 0.927536231884058, 0.6159420289855072, 0.5144927536231884, 0.5144927536231884, 0.5144927536231884, 0.2826086956521739, 0.2391304347826087, 0.18115942028985507, 0.13768115942028986, 0.14492753623188406, 0.14492753623188406, 0.14492753623188406, 0.14492753623188406, 0.14492753623188406, 0.14492753623188406, 0.14492753623188406, 0.14492753623188406, 0.14492753623188406, 0.14492753623188406, 0.14492753623188406, 0.14492753623188406, 0.14492753623188406, 0.14492753623188406, 0.14492753623188406, 0.14492753623188406, 0.14492753623188406, 0.14492753623188406, 0.14492753623188406, 0.15217391304347827, 0.16666666666666666, 0.16666666666666666, 0.17391304347826086, 0.7318840579710145, 0.9347826086956522, 0.7681159420289855, 0.6811594202898551, 0.16666666666666666, 0.16666666666666666, 0.8985507246376812, 0.16666666666666666, 0.16666666666666666, 0.16666666666666666, 0.16666666666666666, 0.16666666666666666, 0.17391304347826086, 0.17391304347826086, 0.17391304347826086, 0.17391304347826086, 0.17391304347826086, 0.17391304347826086, 0.17391304347826086, 0.17391304347826086, 0.17391304347826086, 0.17391304347826086, 0.17391304347826086, 0.17391304347826086, 0.1956521739130435, 0.26811594202898553, 0.6159420289855072], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF3646.gap.json b/pfam_gap_rates/DUF3646.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..0ffdf4dee2370007d204885afeebeb832c360535
--- /dev/null
+++ b/pfam_gap_rates/DUF3646.gap.json
@@ -0,0 +1 @@
+{"family": "DUF3646", "n_seqs": 192, "length": 115, "gap_rates": [0.75, 0.09375, 0.03125, 0.015625, 0.015625, 0.015625, 0.015625, 0.015625, 0.015625, 0.015625, 0.010416666666666666, 0.010416666666666666, 0.010416666666666666, 0.057291666666666664, 0.010416666666666666, 0.005208333333333333, 0.005208333333333333, 0.010416666666666666, 0.005208333333333333, 0.005208333333333333, 0.005208333333333333, 0.005208333333333333, 0.005208333333333333, 0.005208333333333333, 0.005208333333333333, 0.005208333333333333, 0.005208333333333333, 0.005208333333333333, 0.005208333333333333, 0.005208333333333333, 0.005208333333333333, 0.005208333333333333, 0.005208333333333333, 0.005208333333333333, 0.005208333333333333, 0.005208333333333333, 0.005208333333333333, 0.005208333333333333, 0.005208333333333333, 0.010416666666666666, 0.010416666666666666, 0.005208333333333333, 0.005208333333333333, 0.005208333333333333, 0.005208333333333333, 0.03125, 0.005208333333333333, 0.005208333333333333, 0.005208333333333333, 0.005208333333333333, 0.005208333333333333, 0.005208333333333333, 0.005208333333333333, 0.005208333333333333, 0.005208333333333333, 0.005208333333333333, 0.005208333333333333, 0.005208333333333333, 0.005208333333333333, 0.005208333333333333, 0.005208333333333333, 0.005208333333333333, 0.005208333333333333, 0.005208333333333333, 0.005208333333333333, 0.005208333333333333, 0.005208333333333333, 0.005208333333333333, 0.005208333333333333, 0.005208333333333333, 0.0, 0.0, 0.010416666666666666, 0.9010416666666666, 0.005208333333333333, 0.005208333333333333, 0.026041666666666668, 0.005208333333333333, 0.005208333333333333, 0.005208333333333333, 0.005208333333333333, 0.005208333333333333, 0.005208333333333333, 0.005208333333333333, 0.010416666666666666, 0.03125, 0.026041666666666668, 0.026041666666666668, 0.026041666666666668, 0.026041666666666668, 0.026041666666666668, 0.020833333333333332, 0.005208333333333333, 0.005208333333333333, 0.005208333333333333, 0.005208333333333333, 0.005208333333333333, 0.005208333333333333, 0.005208333333333333, 0.005208333333333333, 0.005208333333333333, 0.005208333333333333, 0.005208333333333333, 0.005208333333333333, 0.005208333333333333, 0.005208333333333333, 0.005208333333333333, 0.005208333333333333, 0.005208333333333333, 0.015625, 0.015625, 0.020833333333333332, 0.046875, 0.19791666666666666, 0.296875], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF3657.gap.json b/pfam_gap_rates/DUF3657.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..54d2920a65c9325183532b28fa6cce088d548b86
--- /dev/null
+++ b/pfam_gap_rates/DUF3657.gap.json
@@ -0,0 +1 @@
+{"family": "DUF3657", "n_seqs": 175, "length": 80, "gap_rates": [0.3028571428571429, 0.2057142857142857, 0.09714285714285714, 0.06285714285714286, 0.06285714285714286, 0.06285714285714286, 0.05714285714285714, 0.05142857142857143, 0.08, 0.08, 0.07428571428571429, 0.7885714285714286, 0.8171428571428572, 0.8342857142857143, 0.84, 0.8914285714285715, 0.9028571428571428, 0.9428571428571428, 0.9142857142857143, 0.9028571428571428, 0.8742857142857143, 0.84, 0.8342857142857143, 0.7885714285714286, 0.7771428571428571, 0.49714285714285716, 0.52, 0.5085714285714286, 0.7028571428571428, 0.15428571428571428, 0.10285714285714286, 0.09142857142857143, 0.07428571428571429, 0.03428571428571429, 0.022857142857142857, 0.017142857142857144, 0.022857142857142857, 0.022857142857142857, 0.017142857142857144, 0.022857142857142857, 0.011428571428571429, 0.011428571428571429, 0.011428571428571429, 0.011428571428571429, 0.011428571428571429, 0.005714285714285714, 0.005714285714285714, 0.005714285714285714, 0.005714285714285714, 0.2571428571428571, 0.005714285714285714, 0.011428571428571429, 0.011428571428571429, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.005714285714285714, 0.017142857142857144, 0.02857142857142857, 0.32], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF3659.gap.json b/pfam_gap_rates/DUF3659.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ae04b40502a51d61734b6cfd420acdf1d4829608
--- /dev/null
+++ b/pfam_gap_rates/DUF3659.gap.json
@@ -0,0 +1 @@
+{"family": "DUF3659", "n_seqs": 537, "length": 62, "gap_rates": [0.6201117318435754, 0.19925512104283055, 0.09869646182495345, 0.08193668528864059, 0.06517690875232775, 0.061452513966480445, 0.020484171322160148, 0.00558659217877095, 0.0037243947858473, 0.00186219739292365, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0931098696461825, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0446927374301676, 0.00186219739292365, 0.00186219739292365, 0.00186219739292365, 0.931098696461825, 0.00186219739292365, 0.01303538175046555, 0.0037243947858473, 0.0037243947858473, 0.0037243947858473, 0.0037243947858473, 0.0148975791433892, 0.0148975791433892, 0.0148975791433892, 0.00186219739292365, 0.00186219739292365, 0.0074487895716946, 0.00186219739292365, 0.00186219739292365, 0.00186219739292365, 0.00186219739292365, 0.00186219739292365, 0.00186219739292365, 0.00186219739292365, 0.0223463687150838, 0.00186219739292365, 0.00186219739292365, 0.00558659217877095, 0.00558659217877095, 0.0074487895716946, 0.0074487895716946, 0.0074487895716946, 0.0223463687150838, 0.04283054003724395, 0.0633147113594041, 0.09869646182495345, 0.2811918063314711, 0.8919925512104283], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF367.gap.json b/pfam_gap_rates/DUF367.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..45576d6ba7ca2342fe52c7987942ddc680fde6b1
--- /dev/null
+++ b/pfam_gap_rates/DUF367.gap.json
@@ -0,0 +1 @@
+{"family": "DUF367", "n_seqs": 406, "length": 127, "gap_rates": [0.10098522167487685, 0.07389162561576355, 0.07142857142857142, 0.0665024630541872, 0.06403940886699508, 0.059113300492610835, 0.054187192118226604, 0.054187192118226604, 0.04433497536945813, 0.04433497536945813, 0.04187192118226601, 0.04187192118226601, 0.04187192118226601, 0.04187192118226601, 0.03940886699507389, 0.04926108374384237, 0.05665024630541872, 0.06403940886699508, 0.10098522167487685, 0.07142857142857142, 0.06157635467980296, 0.03940886699507389, 0.034482758620689655, 0.034482758620689655, 0.034482758620689655, 0.034482758620689655, 0.034482758620689655, 0.03201970443349754, 0.03201970443349754, 0.03201970443349754, 0.03201970443349754, 0.03201970443349754, 0.03201970443349754, 0.03201970443349754, 0.034482758620689655, 0.03201970443349754, 0.03201970443349754, 0.03201970443349754, 0.0812807881773399, 0.06157635467980296, 0.03940886699507389, 0.046798029556650245, 0.1206896551724138, 0.08866995073891626, 0.027093596059113302, 0.022167487684729065, 0.022167487684729065, 0.022167487684729065, 0.022167487684729065, 0.022167487684729065, 0.022167487684729065, 0.019704433497536946, 0.019704433497536946, 0.014778325123152709, 0.014778325123152709, 0.014778325123152709, 0.014778325123152709, 0.014778325123152709, 0.014778325123152709, 0.019704433497536946, 0.022167487684729065, 0.022167487684729065, 0.019704433497536946, 0.019704433497536946, 0.019704433497536946, 0.019704433497536946, 0.019704433497536946, 0.019704433497536946, 0.019704433497536946, 0.017241379310344827, 0.017241379310344827, 0.019704433497536946, 0.019704433497536946, 0.019704433497536946, 0.022167487684729065, 0.019704433497536946, 0.017241379310344827, 0.019704433497536946, 0.019704433497536946, 0.019704433497536946, 0.019704433497536946, 0.019704433497536946, 0.022167487684729065, 0.019704433497536946, 0.019704433497536946, 0.024630541871921183, 0.027093596059113302, 0.024630541871921183, 0.024630541871921183, 0.024630541871921183, 0.024630541871921183, 0.027093596059113302, 0.027093596059113302, 0.029556650246305417, 0.03201970443349754, 0.03201970443349754, 0.03201970443349754, 0.029556650246305417, 0.029556650246305417, 0.029556650246305417, 0.029556650246305417, 0.029556650246305417, 0.029556650246305417, 0.029556650246305417, 0.03940886699507389, 0.04187192118226601, 0.04187192118226601, 0.04187192118226601, 0.046798029556650245, 0.04433497536945813, 0.04926108374384237, 0.04187192118226601, 0.04433497536945813, 0.04187192118226601, 0.04433497536945813, 0.04433497536945813, 0.04433497536945813, 0.04433497536945813, 0.04433497536945813, 0.04433497536945813, 0.04926108374384237, 0.05172413793103448, 0.059113300492610835, 0.06157635467980296, 0.06896551724137931, 0.11576354679802955, 0.29310344827586204], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF3716.gap.json b/pfam_gap_rates/DUF3716.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..87722213292f46ce2f332f47b8dd8921c867de9f
--- /dev/null
+++ b/pfam_gap_rates/DUF3716.gap.json
@@ -0,0 +1 @@
+{"family": "DUF3716", "n_seqs": 142, "length": 65, "gap_rates": [0.33098591549295775, 0.13380281690140844, 0.035211267605633804, 0.035211267605633804, 0.035211267605633804, 0.035211267605633804, 0.035211267605633804, 0.035211267605633804, 0.035211267605633804, 0.035211267605633804, 0.028169014084507043, 0.02112676056338028, 0.014084507042253521, 0.014084507042253521, 0.8943661971830986, 0.8873239436619719, 0.014084507042253521, 0.014084507042253521, 0.014084507042253521, 0.014084507042253521, 0.9436619718309859, 0.9436619718309859, 0.04225352112676056, 0.04225352112676056, 0.007042253521126761, 0.007042253521126761, 0.014084507042253521, 0.014084507042253521, 0.014084507042253521, 0.007042253521126761, 0.007042253521126761, 0.007042253521126761, 0.007042253521126761, 0.007042253521126761, 0.014084507042253521, 0.8732394366197183, 0.8380281690140845, 0.8028169014084507, 0.7746478873239436, 0.7676056338028169, 0.7464788732394366, 0.6971830985915493, 0.07746478873239436, 0.056338028169014086, 0.04225352112676056, 0.04225352112676056, 0.04225352112676056, 0.04225352112676056, 0.04225352112676056, 0.04225352112676056, 0.04225352112676056, 0.04225352112676056, 0.04225352112676056, 0.04225352112676056, 0.04225352112676056, 0.04225352112676056, 0.056338028169014086, 0.07042253521126761, 0.1056338028169014, 0.16901408450704225, 0.2746478873239437, 0.2605633802816901, 0.28169014084507044, 0.36619718309859156, 0.5774647887323944], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF3730.gap.json b/pfam_gap_rates/DUF3730.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..750277ae02f4d045c5ea2d2a403820fd83201be1
--- /dev/null
+++ b/pfam_gap_rates/DUF3730.gap.json
@@ -0,0 +1 @@
+{"family": "DUF3730", "n_seqs": 123, "length": 299, "gap_rates": [0.5203252032520326, 0.3983739837398374, 0.35772357723577236, 0.34146341463414637, 0.3170731707317073, 0.3089430894308943, 0.2845528455284553, 0.2845528455284553, 0.2601626016260163, 0.2601626016260163, 0.25203252032520324, 0.3821138211382114, 0.8536585365853658, 0.8617886178861789, 0.8536585365853658, 0.8536585365853658, 0.21138211382113822, 0.2032520325203252, 0.18699186991869918, 0.18699186991869918, 0.17073170731707318, 0.16260162601626016, 0.16260162601626016, 0.15447154471544716, 0.15447154471544716, 0.15447154471544716, 0.15447154471544716, 0.15447154471544716, 0.14634146341463414, 0.14634146341463414, 0.14634146341463414, 0.14634146341463414, 0.14634146341463414, 0.13821138211382114, 0.13821138211382114, 0.7967479674796748, 0.8048780487804879, 0.8455284552845529, 0.8536585365853658, 0.8861788617886179, 0.8455284552845529, 0.8292682926829268, 0.8048780487804879, 0.7560975609756098, 0.17073170731707318, 0.17073170731707318, 0.16260162601626016, 0.16260162601626016, 0.13821138211382114, 0.13008130081300814, 0.13008130081300814, 0.13008130081300814, 0.13008130081300814, 0.13821138211382114, 0.13821138211382114, 0.13821138211382114, 0.13008130081300814, 0.13008130081300814, 0.13821138211382114, 0.13821138211382114, 0.4959349593495935, 0.8130081300813008, 0.7886178861788617, 0.4715447154471545, 0.42276422764227645, 0.17073170731707318, 0.13821138211382114, 0.13008130081300814, 0.11382113821138211, 0.11382113821138211, 0.11382113821138211, 0.11382113821138211, 0.11382113821138211, 0.11382113821138211, 0.11382113821138211, 0.11382113821138211, 0.11382113821138211, 0.11382113821138211, 0.17073170731707318, 0.16260162601626016, 0.13008130081300814, 0.10569105691056911, 0.10569105691056911, 0.10569105691056911, 0.0975609756097561, 0.0975609756097561, 0.0975609756097561, 0.0975609756097561, 0.0975609756097561, 0.0975609756097561, 0.0975609756097561, 0.10569105691056911, 0.10569105691056911, 0.10569105691056911, 0.10569105691056911, 0.5934959349593496, 0.6097560975609756, 0.8130081300813008, 0.8536585365853658, 0.8780487804878049, 0.8536585365853658, 0.8292682926829268, 0.7479674796747967, 0.5853658536585366, 0.5691056910569106, 0.2926829268292683, 0.24390243902439024, 0.17073170731707318, 0.13008130081300814, 0.0975609756097561, 0.07317073170731707, 0.07317073170731707, 0.07317073170731707, 0.07317073170731707, 0.07317073170731707, 0.07317073170731707, 0.07317073170731707, 0.06504065040650407, 0.04878048780487805, 0.04878048780487805, 0.04878048780487805, 0.04878048780487805, 0.04878048780487805, 0.04878048780487805, 0.04878048780487805, 0.8130081300813008, 0.8130081300813008, 0.8130081300813008, 0.8292682926829268, 0.8292682926829268, 0.943089430894309, 0.943089430894309, 0.8292682926829268, 0.8292682926829268, 0.8130081300813008, 0.8130081300813008, 0.8130081300813008, 0.8130081300813008, 0.04878048780487805, 0.04878048780487805, 0.056910569105691054, 0.056910569105691054, 0.04878048780487805, 0.04878048780487805, 0.04878048780487805, 0.04878048780487805, 0.056910569105691054, 0.04878048780487805, 0.04878048780487805, 0.4959349593495935, 0.056910569105691054, 0.056910569105691054, 0.032520325203252036, 0.8130081300813008, 0.8130081300813008, 0.8211382113821138, 0.8211382113821138, 0.8292682926829268, 0.8211382113821138, 0.8211382113821138, 0.8211382113821138, 0.8130081300813008, 0.8130081300813008, 0.024390243902439025, 0.024390243902439025, 0.024390243902439025, 0.024390243902439025, 0.024390243902439025, 0.024390243902439025, 0.024390243902439025, 0.024390243902439025, 0.024390243902439025, 0.7886178861788617, 0.8130081300813008, 0.7723577235772358, 0.43902439024390244, 0.44715447154471544, 0.36585365853658536, 0.032520325203252036, 0.024390243902439025, 0.024390243902439025, 0.032520325203252036, 0.032520325203252036, 0.6341463414634146, 0.032520325203252036, 0.032520325203252036, 0.032520325203252036, 0.032520325203252036, 0.032520325203252036, 0.032520325203252036, 0.032520325203252036, 0.032520325203252036, 0.04065040650406504, 0.04065040650406504, 0.04065040650406504, 0.04065040650406504, 0.04065040650406504, 0.04065040650406504, 0.04065040650406504, 0.04065040650406504, 0.8048780487804879, 0.8211382113821138, 0.8211382113821138, 0.8211382113821138, 0.8211382113821138, 0.8455284552845529, 0.8211382113821138, 0.8211382113821138, 0.8211382113821138, 0.8048780487804879, 0.8048780487804879, 0.032520325203252036, 0.8130081300813008, 0.032520325203252036, 0.04065040650406504, 0.04065040650406504, 0.04065040650406504, 0.04065040650406504, 0.04065040650406504, 0.04065040650406504, 0.04065040650406504, 0.04065040650406504, 0.04065040650406504, 0.04065040650406504, 0.04065040650406504, 0.04065040650406504, 0.04065040650406504, 0.04065040650406504, 0.04065040650406504, 0.04065040650406504, 0.04065040650406504, 0.04065040650406504, 0.8455284552845529, 0.8861788617886179, 0.9105691056910569, 0.8780487804878049, 0.5853658536585366, 0.04065040650406504, 0.04065040650406504, 0.04065040650406504, 0.04065040650406504, 0.056910569105691054, 0.06504065040650407, 0.08130081300813008, 0.08130081300813008, 0.07317073170731707, 0.07317073170731707, 0.07317073170731707, 0.07317073170731707, 0.06504065040650407, 0.06504065040650407, 0.06504065040650407, 0.07317073170731707, 0.37398373983739835, 0.3983739837398374, 0.3983739837398374, 0.13821138211382114, 0.12195121951219512, 0.13008130081300814, 0.13008130081300814, 0.12195121951219512, 0.11382113821138211, 0.11382113821138211, 0.13008130081300814, 0.13821138211382114, 0.13821138211382114, 0.14634146341463414, 0.16260162601626016, 0.17073170731707318, 0.16260162601626016, 0.16260162601626016, 0.17073170731707318, 0.17073170731707318, 0.17073170731707318, 0.17073170731707318, 0.17073170731707318, 0.17073170731707318, 0.17073170731707318, 0.17886178861788618, 0.18699186991869918, 0.18699186991869918, 0.4715447154471545, 0.21138211382113822, 0.7967479674796748, 0.8292682926829268, 0.8617886178861789, 0.8292682926829268, 0.8048780487804879, 0.7967479674796748, 0.21951219512195122, 0.22764227642276422, 0.22764227642276422, 0.25203252032520324, 0.25203252032520324, 0.2682926829268293, 0.2845528455284553, 0.2845528455284553, 0.34959349593495936, 0.5040650406504065], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF3738.gap.json b/pfam_gap_rates/DUF3738.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..27d203cf137c3400e3dd5ab4c54d5d603e6d6aa2
--- /dev/null
+++ b/pfam_gap_rates/DUF3738.gap.json
@@ -0,0 +1 @@
+{"family": "DUF3738", "n_seqs": 107, "length": 259, "gap_rates": [0.9158878504672897, 0.32710280373831774, 0.16822429906542055, 0.14953271028037382, 0.14018691588785046, 0.14018691588785046, 0.14018691588785046, 0.14018691588785046, 0.14018691588785046, 0.14018691588785046, 0.14018691588785046, 0.1588785046728972, 0.9439252336448598, 0.9158878504672897, 0.12149532710280374, 0.102803738317757, 0.102803738317757, 0.102803738317757, 0.411214953271028, 0.102803738317757, 0.07476635514018691, 0.056074766355140186, 0.056074766355140186, 0.06542056074766354, 0.06542056074766354, 0.9439252336448598, 0.04672897196261682, 0.04672897196261682, 0.04672897196261682, 0.04672897196261682, 0.04672897196261682, 0.04672897196261682, 0.04672897196261682, 0.04672897196261682, 0.04672897196261682, 0.04672897196261682, 0.056074766355140186, 0.056074766355140186, 0.056074766355140186, 0.06542056074766354, 0.102803738317757, 0.09345794392523364, 0.07476635514018691, 0.5887850467289719, 0.7383177570093458, 0.7383177570093458, 0.7850467289719626, 0.8130841121495327, 0.9158878504672897, 0.9252336448598131, 0.8130841121495327, 0.7850467289719626, 0.7383177570093458, 0.7383177570093458, 0.7289719626168224, 0.5700934579439252, 0.07476635514018691, 0.07476635514018691, 0.028037383177570093, 0.028037383177570093, 0.028037383177570093, 0.028037383177570093, 0.028037383177570093, 0.037383177570093455, 0.028037383177570093, 0.018691588785046728, 0.018691588785046728, 0.018691588785046728, 0.028037383177570093, 0.018691588785046728, 0.018691588785046728, 0.018691588785046728, 0.018691588785046728, 0.018691588785046728, 0.018691588785046728, 0.018691588785046728, 0.018691588785046728, 0.018691588785046728, 0.018691588785046728, 0.018691588785046728, 0.018691588785046728, 0.018691588785046728, 0.028037383177570093, 0.028037383177570093, 0.028037383177570093, 0.028037383177570093, 0.028037383177570093, 0.028037383177570093, 0.028037383177570093, 0.037383177570093455, 0.12149532710280374, 0.07476635514018691, 0.9439252336448598, 0.056074766355140186, 0.028037383177570093, 0.028037383177570093, 0.028037383177570093, 0.028037383177570093, 0.028037383177570093, 0.028037383177570093, 0.028037383177570093, 0.028037383177570093, 0.028037383177570093, 0.028037383177570093, 0.028037383177570093, 0.037383177570093455, 0.04672897196261682, 0.028037383177570093, 0.08411214953271028, 0.12149532710280374, 0.14018691588785046, 0.2803738317757009, 0.37383177570093457, 0.3925233644859813, 0.4766355140186916, 0.4672897196261682, 0.42990654205607476, 0.6635514018691588, 0.6822429906542056, 0.7570093457943925, 0.8317757009345794, 0.897196261682243, 0.9252336448598131, 0.9345794392523364, 0.9158878504672897, 0.8504672897196262, 0.7570093457943925, 0.7476635514018691, 0.6728971962616822, 0.6448598130841121, 0.3364485981308411, 0.45794392523364486, 0.16822429906542055, 0.7757009345794392, 0.8130841121495327, 0.822429906542056, 0.8317757009345794, 0.8598130841121495, 0.8691588785046729, 0.897196261682243, 0.9158878504672897, 0.9439252336448598, 0.9252336448598131, 0.9158878504672897, 0.8878504672897196, 0.8598130841121495, 0.8598130841121495, 0.8317757009345794, 0.8130841121495327, 0.8037383177570093, 0.7102803738317757, 0.06542056074766354, 0.04672897196261682, 0.028037383177570093, 0.028037383177570093, 0.018691588785046728, 0.018691588785046728, 0.018691588785046728, 0.009345794392523364, 0.009345794392523364, 0.009345794392523364, 0.009345794392523364, 0.009345794392523364, 0.009345794392523364, 0.009345794392523364, 0.009345794392523364, 0.009345794392523364, 0.009345794392523364, 0.009345794392523364, 0.009345794392523364, 0.8317757009345794, 0.897196261682243, 0.8878504672897196, 0.6635514018691588, 0.009345794392523364, 0.009345794392523364, 0.009345794392523364, 0.009345794392523364, 0.009345794392523364, 0.009345794392523364, 0.009345794392523364, 0.009345794392523364, 0.009345794392523364, 0.009345794392523364, 0.009345794392523364, 0.009345794392523364, 0.009345794392523364, 0.009345794392523364, 0.009345794392523364, 0.009345794392523364, 0.009345794392523364, 0.009345794392523364, 0.009345794392523364, 0.009345794392523364, 0.018691588785046728, 0.27102803738317754, 0.2523364485981308, 0.5981308411214953, 0.6355140186915887, 0.719626168224299, 0.7570093457943925, 0.8598130841121495, 0.8598130841121495, 0.8785046728971962, 0.897196261682243, 0.9252336448598131, 0.8878504672897196, 0.8598130841121495, 0.8598130841121495, 0.8130841121495327, 0.7476635514018691, 0.6915887850467289, 0.6355140186915887, 0.5794392523364486, 0.5420560747663551, 0.4392523364485981, 0.3925233644859813, 0.32710280373831774, 0.27102803738317754, 0.2336448598130841, 0.18691588785046728, 0.18691588785046728, 0.14953271028037382, 0.102803738317757, 0.07476635514018691, 0.028037383177570093, 0.028037383177570093, 0.028037383177570093, 0.028037383177570093, 0.028037383177570093, 0.028037383177570093, 0.028037383177570093, 0.037383177570093455, 0.9439252336448598, 0.037383177570093455, 0.028037383177570093, 0.028037383177570093, 0.028037383177570093, 0.2803738317757009, 0.028037383177570093, 0.028037383177570093, 0.028037383177570093, 0.028037383177570093, 0.028037383177570093, 0.028037383177570093, 0.028037383177570093, 0.028037383177570093, 0.028037383177570093, 0.028037383177570093, 0.028037383177570093, 0.028037383177570093, 0.028037383177570093, 0.028037383177570093, 0.037383177570093455, 0.037383177570093455, 0.04672897196261682, 0.08411214953271028, 0.16822429906542055, 0.308411214953271], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF384.gap.json b/pfam_gap_rates/DUF384.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..06dfea0e4b4dfb688b98b80d84e61cfb6c429d2a
--- /dev/null
+++ b/pfam_gap_rates/DUF384.gap.json
@@ -0,0 +1 @@
+{"family": "DUF384", "n_seqs": 265, "length": 67, "gap_rates": [0.10566037735849057, 0.06037735849056604, 0.04150943396226415, 0.026415094339622643, 0.011320754716981131, 0.011320754716981131, 0.011320754716981131, 0.011320754716981131, 0.007547169811320755, 0.0037735849056603774, 0.0037735849056603774, 0.0037735849056603774, 0.0037735849056603774, 0.0037735849056603774, 0.0037735849056603774, 0.0037735849056603774, 0.0037735849056603774, 0.0037735849056603774, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0037735849056603774, 0.0037735849056603774, 0.0037735849056603774, 0.0037735849056603774, 0.9433962264150944, 0.011320754716981131, 0.9358490566037736, 0.9433962264150944, 0.9169811320754717, 0.03773584905660377, 0.05660377358490566, 0.05660377358490566, 0.03018867924528302, 0.9207547169811321, 0.9283018867924528, 0.9358490566037736, 0.9433962264150944, 0.9471698113207547, 0.9358490566037736, 0.9320754716981132, 0.9207547169811321, 0.9132075471698113, 0.026415094339622643, 0.026415094339622643, 0.026415094339622643, 0.026415094339622643, 0.03018867924528302, 0.03018867924528302, 0.03018867924528302, 0.033962264150943396, 0.03773584905660377, 0.04150943396226415, 0.045283018867924525, 0.04905660377358491, 0.04905660377358491, 0.05660377358490566, 0.07547169811320754, 0.10566037735849057, 0.12452830188679245, 0.14339622641509434, 0.38113207547169814], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF3844.gap.json b/pfam_gap_rates/DUF3844.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d67fa342db61ee9741d457ced2222d5d0d5ab0aa
--- /dev/null
+++ b/pfam_gap_rates/DUF3844.gap.json
@@ -0,0 +1 @@
+{"family": "DUF3844", "n_seqs": 121, "length": 120, "gap_rates": [0.04132231404958678, 0.008264462809917356, 0.008264462809917356, 0.008264462809917356, 0.008264462809917356, 0.008264462809917356, 0.008264462809917356, 0.008264462809917356, 0.008264462809917356, 0.008264462809917356, 0.008264462809917356, 0.008264462809917356, 0.01652892561983471, 0.008264462809917356, 0.008264462809917356, 0.008264462809917356, 0.008264462809917356, 0.008264462809917356, 0.008264462809917356, 0.008264462809917356, 0.008264462809917356, 0.008264462809917356, 0.008264462809917356, 0.008264462809917356, 0.10743801652892562, 0.1322314049586777, 0.8760330578512396, 0.8925619834710744, 0.9008264462809917, 0.8842975206611571, 0.8760330578512396, 0.23140495867768596, 0.6033057851239669, 0.5867768595041323, 0.45454545454545453, 0.6859504132231405, 0.8677685950413223, 0.9421487603305785, 0.9090909090909091, 0.7933884297520661, 0.6363636363636364, 0.11570247933884298, 0.06611570247933884, 0.01652892561983471, 0.008264462809917356, 0.008264462809917356, 0.008264462809917356, 0.008264462809917356, 0.008264462809917356, 0.008264462809917356, 0.008264462809917356, 0.05785123966942149, 0.08264462809917356, 0.12396694214876033, 0.12396694214876033, 0.1652892561983471, 0.2066115702479339, 0.5289256198347108, 0.6446280991735537, 0.5950413223140496, 0.8677685950413223, 0.9421487603305785, 0.9090909090909091, 0.8099173553719008, 0.4214876033057851, 0.2066115702479339, 0.11570247933884298, 0.11570247933884298, 0.03305785123966942, 0.024793388429752067, 0.008264462809917356, 0.008264462809917356, 0.008264462809917356, 0.008264462809917356, 0.008264462809917356, 0.008264462809917356, 0.008264462809917356, 0.008264462809917356, 0.0, 0.0, 0.0, 0.0, 0.0, 0.008264462809917356, 0.008264462809917356, 0.008264462809917356, 0.008264462809917356, 0.008264462809917356, 0.008264462809917356, 0.008264462809917356, 0.008264462809917356, 0.008264462809917356, 0.01652892561983471, 0.01652892561983471, 0.01652892561983471, 0.01652892561983471, 0.01652892561983471, 0.01652892561983471, 0.01652892561983471, 0.01652892561983471, 0.01652892561983471, 0.01652892561983471, 0.01652892561983471, 0.01652892561983471, 0.01652892561983471, 0.01652892561983471, 0.03305785123966942, 0.04132231404958678, 0.04132231404958678, 0.049586776859504134, 0.049586776859504134, 0.05785123966942149, 0.05785123966942149, 0.06611570247933884, 0.06611570247933884, 0.06611570247933884, 0.06611570247933884, 0.06611570247933884, 0.11570247933884298, 0.34710743801652894], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF3866.gap.json b/pfam_gap_rates/DUF3866.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..39eeb1e8b5cddbd507ffcdea3cca768b78966af7
--- /dev/null
+++ b/pfam_gap_rates/DUF3866.gap.json
@@ -0,0 +1 @@
+{"family": "DUF3866", "n_seqs": 122, "length": 346, "gap_rates": [0.18032786885245902, 0.05737704918032787, 0.05737704918032787, 0.05737704918032787, 0.05737704918032787, 0.05737704918032787, 0.05737704918032787, 0.03278688524590164, 0.03278688524590164, 0.03278688524590164, 0.03278688524590164, 0.03278688524590164, 0.03278688524590164, 0.03278688524590164, 0.03278688524590164, 0.03278688524590164, 0.03278688524590164, 0.02459016393442623, 0.02459016393442623, 0.02459016393442623, 0.02459016393442623, 0.02459016393442623, 0.02459016393442623, 0.02459016393442623, 0.02459016393442623, 0.02459016393442623, 0.02459016393442623, 0.02459016393442623, 0.02459016393442623, 0.02459016393442623, 0.02459016393442623, 0.02459016393442623, 0.02459016393442623, 0.02459016393442623, 0.02459016393442623, 0.02459016393442623, 0.02459016393442623, 0.02459016393442623, 0.02459016393442623, 0.07377049180327869, 0.07377049180327869, 0.09836065573770492, 0.9426229508196722, 0.05737704918032787, 0.040983606557377046, 0.06557377049180328, 0.04918032786885246, 0.06557377049180328, 0.06557377049180328, 0.07377049180327869, 0.040983606557377046, 0.8278688524590164, 0.9344262295081968, 0.860655737704918, 0.7786885245901639, 0.02459016393442623, 0.6967213114754098, 0.02459016393442623, 0.02459016393442623, 0.02459016393442623, 0.01639344262295082, 0.01639344262295082, 0.01639344262295082, 0.01639344262295082, 0.01639344262295082, 0.01639344262295082, 0.01639344262295082, 0.01639344262295082, 0.01639344262295082, 0.01639344262295082, 0.02459016393442623, 0.02459016393442623, 0.040983606557377046, 0.02459016393442623, 0.02459016393442623, 0.02459016393442623, 0.02459016393442623, 0.02459016393442623, 0.05737704918032787, 0.06557377049180328, 0.04918032786885246, 0.04918032786885246, 0.02459016393442623, 0.02459016393442623, 0.03278688524590164, 0.040983606557377046, 0.04918032786885246, 0.04918032786885246, 0.04918032786885246, 0.040983606557377046, 0.9344262295081968, 0.02459016393442623, 0.02459016393442623, 0.01639344262295082, 0.01639344262295082, 0.01639344262295082, 0.01639344262295082, 0.01639344262295082, 0.01639344262295082, 0.01639344262295082, 0.01639344262295082, 0.01639344262295082, 0.01639344262295082, 0.01639344262295082, 0.01639344262295082, 0.01639344262295082, 0.01639344262295082, 0.01639344262295082, 0.01639344262295082, 0.01639344262295082, 0.01639344262295082, 0.01639344262295082, 0.01639344262295082, 0.01639344262295082, 0.01639344262295082, 0.02459016393442623, 0.02459016393442623, 0.8688524590163934, 0.9016393442622951, 0.9180327868852459, 0.8688524590163934, 0.8524590163934426, 0.03278688524590164, 0.04918032786885246, 0.9180327868852459, 0.040983606557377046, 0.02459016393442623, 0.02459016393442623, 0.02459016393442623, 0.02459016393442623, 0.02459016393442623, 0.02459016393442623, 0.02459016393442623, 0.02459016393442623, 0.02459016393442623, 0.02459016393442623, 0.02459016393442623, 0.02459016393442623, 0.02459016393442623, 0.02459016393442623, 0.02459016393442623, 0.02459016393442623, 0.02459016393442623, 0.02459016393442623, 0.02459016393442623, 0.02459016393442623, 0.02459016393442623, 0.02459016393442623, 0.02459016393442623, 0.02459016393442623, 0.02459016393442623, 0.07377049180327869, 0.06557377049180328, 0.01639344262295082, 0.01639344262295082, 0.01639344262295082, 0.07377049180327869, 0.01639344262295082, 0.01639344262295082, 0.01639344262295082, 0.01639344262295082, 0.01639344262295082, 0.01639344262295082, 0.01639344262295082, 0.01639344262295082, 0.01639344262295082, 0.01639344262295082, 0.01639344262295082, 0.01639344262295082, 0.01639344262295082, 0.01639344262295082, 0.01639344262295082, 0.01639344262295082, 0.01639344262295082, 0.00819672131147541, 0.00819672131147541, 0.00819672131147541, 0.00819672131147541, 0.00819672131147541, 0.00819672131147541, 0.00819672131147541, 0.00819672131147541, 0.00819672131147541, 0.00819672131147541, 0.040983606557377046, 0.01639344262295082, 0.00819672131147541, 0.00819672131147541, 0.00819672131147541, 0.00819672131147541, 0.00819672131147541, 0.00819672131147541, 0.00819672131147541, 0.00819672131147541, 0.00819672131147541, 0.00819672131147541, 0.00819672131147541, 0.00819672131147541, 0.00819672131147541, 0.00819672131147541, 0.00819672131147541, 0.00819672131147541, 0.00819672131147541, 0.00819672131147541, 0.00819672131147541, 0.00819672131147541, 0.00819672131147541, 0.00819672131147541, 0.00819672131147541, 0.00819672131147541, 0.00819672131147541, 0.00819672131147541, 0.00819672131147541, 0.00819672131147541, 0.00819672131147541, 0.00819672131147541, 0.00819672131147541, 0.00819672131147541, 0.00819672131147541, 0.00819672131147541, 0.00819672131147541, 0.00819672131147541, 0.00819672131147541, 0.00819672131147541, 0.00819672131147541, 0.00819672131147541, 0.00819672131147541, 0.00819672131147541, 0.00819672131147541, 0.00819672131147541, 0.00819672131147541, 0.00819672131147541, 0.00819672131147541, 0.00819672131147541, 0.00819672131147541, 0.00819672131147541, 0.00819672131147541, 0.00819672131147541, 0.00819672131147541, 0.00819672131147541, 0.00819672131147541, 0.00819672131147541, 0.00819672131147541, 0.00819672131147541, 0.00819672131147541, 0.00819672131147541, 0.00819672131147541, 0.00819672131147541, 0.00819672131147541, 0.00819672131147541, 0.00819672131147541, 0.00819672131147541, 0.00819672131147541, 0.040983606557377046, 0.01639344262295082, 0.01639344262295082, 0.01639344262295082, 0.03278688524590164, 0.03278688524590164, 0.00819672131147541, 0.00819672131147541, 0.00819672131147541, 0.00819672131147541, 0.00819672131147541, 0.00819672131147541, 0.00819672131147541, 0.01639344262295082, 0.13934426229508196, 0.11475409836065574, 0.08196721311475409, 0.06557377049180328, 0.7540983606557377, 0.8442622950819673, 0.8688524590163934, 0.9016393442622951, 0.9262295081967213, 0.9344262295081968, 0.9180327868852459, 0.8770491803278688, 0.860655737704918, 0.8360655737704918, 0.1557377049180328, 0.040983606557377046, 0.03278688524590164, 0.03278688524590164, 0.02459016393442623, 0.02459016393442623, 0.02459016393442623, 0.01639344262295082, 0.01639344262295082, 0.02459016393442623, 0.02459016393442623, 0.5901639344262295, 0.8278688524590164, 0.16393442622950818, 0.14754098360655737, 0.07377049180327869, 0.05737704918032787, 0.040983606557377046, 0.03278688524590164, 0.02459016393442623, 0.02459016393442623, 0.01639344262295082, 0.02459016393442623, 0.9344262295081968, 0.9344262295081968, 0.02459016393442623, 0.02459016393442623, 0.5819672131147541, 0.06557377049180328, 0.03278688524590164, 0.02459016393442623, 0.20491803278688525, 0.02459016393442623, 0.01639344262295082, 0.01639344262295082, 0.01639344262295082, 0.01639344262295082, 0.01639344262295082, 0.03278688524590164, 0.03278688524590164, 0.01639344262295082, 0.01639344262295082, 0.01639344262295082, 0.01639344262295082, 0.01639344262295082, 0.01639344262295082, 0.01639344262295082, 0.01639344262295082, 0.01639344262295082, 0.01639344262295082, 0.01639344262295082, 0.01639344262295082, 0.01639344262295082, 0.01639344262295082, 0.01639344262295082, 0.01639344262295082, 0.01639344262295082, 0.01639344262295082, 0.01639344262295082, 0.01639344262295082, 0.01639344262295082, 0.01639344262295082, 0.03278688524590164, 0.06557377049180328, 0.2459016393442623], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF3880.gap.json b/pfam_gap_rates/DUF3880.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e099786d240ec01a413561309a0c794e36b7dd58
--- /dev/null
+++ b/pfam_gap_rates/DUF3880.gap.json
@@ -0,0 +1 @@
+{"family": "DUF3880", "n_seqs": 252, "length": 85, "gap_rates": [0.14285714285714285, 0.09126984126984126, 0.07936507936507936, 0.07539682539682539, 0.07539682539682539, 0.07539682539682539, 0.07539682539682539, 0.07539682539682539, 0.07142857142857142, 0.07142857142857142, 0.05555555555555555, 0.05555555555555555, 0.8412698412698413, 0.05952380952380952, 0.051587301587301584, 0.03968253968253968, 0.03968253968253968, 0.027777777777777776, 0.027777777777777776, 0.011904761904761904, 0.011904761904761904, 0.011904761904761904, 0.007936507936507936, 0.007936507936507936, 0.007936507936507936, 0.007936507936507936, 0.007936507936507936, 0.003968253968253968, 0.003968253968253968, 0.003968253968253968, 0.0, 0.8650793650793651, 0.0, 0.0, 0.0, 0.0, 0.0, 0.027777777777777776, 0.027777777777777776, 0.06349206349206349, 0.11507936507936507, 0.01984126984126984, 0.01984126984126984, 0.003968253968253968, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.9365079365079365, 0.003968253968253968, 0.003968253968253968, 0.0, 0.003968253968253968, 0.007936507936507936, 0.003968253968253968, 0.01984126984126984, 0.5436507936507936, 0.5674603174603174, 0.6031746031746031, 0.5634920634920635, 0.9087301587301587, 0.9484126984126984, 0.9444444444444444, 0.9047619047619048, 0.1349206349206349, 0.09126984126984126, 0.031746031746031744, 0.031746031746031744, 0.031746031746031744, 0.031746031746031744, 0.031746031746031744, 0.031746031746031744, 0.03571428571428571, 0.03968253968253968, 0.05952380952380952, 0.18253968253968253, 0.28174603174603174, 0.7380952380952381], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF3883.gap.json b/pfam_gap_rates/DUF3883.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..7bd7860557e1afa7131d42ea9bb797d2a03b863a
--- /dev/null
+++ b/pfam_gap_rates/DUF3883.gap.json
@@ -0,0 +1 @@
+{"family": "DUF3883", "n_seqs": 388, "length": 115, "gap_rates": [0.6134020618556701, 0.22938144329896906, 0.20103092783505155, 0.18814432989690721, 0.18298969072164947, 0.15979381443298968, 0.15463917525773196, 0.15463917525773196, 0.14432989690721648, 0.13917525773195877, 0.13659793814432988, 0.12628865979381443, 0.12371134020618557, 0.11597938144329897, 0.1134020618556701, 0.11597938144329897, 0.13402061855670103, 0.6623711340206185, 0.7139175257731959, 0.7654639175257731, 0.8144329896907216, 0.7371134020618557, 0.6829896907216495, 0.6030927835051546, 0.42783505154639173, 0.3943298969072165, 0.06958762886597938, 0.059278350515463915, 0.05412371134020619, 0.04896907216494845, 0.04639175257731959, 0.04896907216494845, 0.13402061855670103, 0.9484536082474226, 0.654639175257732, 0.04381443298969072, 0.030927835051546393, 0.02577319587628866, 0.02577319587628866, 0.02577319587628866, 0.023195876288659795, 0.023195876288659795, 0.023195876288659795, 0.023195876288659795, 0.023195876288659795, 0.02577319587628866, 0.7860824742268041, 0.9072164948453608, 0.9381443298969072, 0.9201030927835051, 0.8530927835051546, 0.6417525773195877, 0.20103092783505155, 0.10051546391752578, 0.08762886597938144, 0.04639175257731959, 0.845360824742268, 0.9355670103092784, 0.8788659793814433, 0.7989690721649485, 0.010309278350515464, 0.005154639175257732, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.8865979381443299, 0.9381443298969072, 0.4690721649484536, 0.07731958762886598, 0.023195876288659795, 0.010309278350515464, 0.010309278350515464, 0.01288659793814433, 0.01288659793814433, 0.01288659793814433, 0.01288659793814433, 0.01288659793814433, 0.01288659793814433, 0.01288659793814433, 0.01288659793814433, 0.01288659793814433, 0.015463917525773196, 0.015463917525773196, 0.015463917525773196, 0.015463917525773196, 0.9432989690721649, 0.03350515463917526, 0.030927835051546393, 0.030927835051546393, 0.05670103092783505, 0.06701030927835051, 0.05412371134020619, 0.05154639175257732, 0.04381443298969072, 0.04381443298969072, 0.04381443298969072, 0.04639175257731959, 0.04896907216494845, 0.07474226804123711, 0.1056701030927835, 0.9123711340206185, 0.19072164948453607, 0.2422680412371134, 0.29381443298969073, 0.36597938144329895, 0.9278350515463918, 0.5489690721649485, 0.595360824742268, 0.7680412371134021, 0.884020618556701], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF389.gap.json b/pfam_gap_rates/DUF389.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..00c17ea6b0178c8799fa57243f7f96711c3be67d
--- /dev/null
+++ b/pfam_gap_rates/DUF389.gap.json
@@ -0,0 +1 @@
+{"family": "DUF389", "n_seqs": 517, "length": 186, "gap_rates": [0.03481624758220503, 0.027079303675048357, 0.02321083172147002, 0.02321083172147002, 0.02321083172147002, 0.02321083172147002, 0.02321083172147002, 0.02321083172147002, 0.02321083172147002, 0.02321083172147002, 0.02321083172147002, 0.02321083172147002, 0.02321083172147002, 0.02321083172147002, 0.02321083172147002, 0.02321083172147002, 0.02321083172147002, 0.02321083172147002, 0.02321083172147002, 0.02321083172147002, 0.02321083172147002, 0.02127659574468085, 0.02321083172147002, 0.02321083172147002, 0.025145067698259187, 0.02321083172147002, 0.02127659574468085, 0.017408123791102514, 0.017408123791102514, 0.017408123791102514, 0.019342359767891684, 0.019342359767891684, 0.019342359767891684, 0.015473887814313346, 0.013539651837524178, 0.013539651837524178, 0.013539651837524178, 0.013539651837524178, 0.013539651837524178, 0.013539651837524178, 0.013539651837524178, 0.015473887814313346, 0.015473887814313346, 0.015473887814313346, 0.015473887814313346, 0.015473887814313346, 0.017408123791102514, 0.03481624758220503, 0.0367504835589942, 0.029013539651837523, 0.874274661508704, 0.058027079303675046, 0.07736943907156674, 0.1450676982591876, 0.7911025145067698, 0.8916827852998066, 0.7659574468085106, 0.7292069632495164, 0.7408123791102514, 0.7176015473887815, 0.6344294003868471, 0.586073500967118, 0.195357833655706, 0.0367504835589942, 0.08897485493230174, 0.3307543520309478, 0.025145067698259187, 0.02127659574468085, 0.017408123791102514, 0.017408123791102514, 0.017408123791102514, 0.017408123791102514, 0.017408123791102514, 0.019342359767891684, 0.02127659574468085, 0.02127659574468085, 0.8878143133462283, 0.8800773694390716, 0.02127659574468085, 0.02127659574468085, 0.02127659574468085, 0.02127659574468085, 0.02127659574468085, 0.02127659574468085, 0.02127659574468085, 0.02127659574468085, 0.019342359767891684, 0.019342359767891684, 0.019342359767891684, 0.019342359767891684, 0.019342359767891684, 0.019342359767891684, 0.017408123791102514, 0.015473887814313346, 0.015473887814313346, 0.015473887814313346, 0.015473887814313346, 0.015473887814313346, 0.017408123791102514, 0.015473887814313346, 0.9342359767891683, 0.4506769825918762, 0.017408123791102514, 0.017408123791102514, 0.017408123791102514, 0.015473887814313346, 0.015473887814313346, 0.015473887814313346, 0.015473887814313346, 0.013539651837524178, 0.013539651837524178, 0.013539651837524178, 0.015473887814313346, 0.015473887814313346, 0.015473887814313346, 0.013539651837524178, 0.013539651837524178, 0.013539651837524178, 0.013539651837524178, 0.013539651837524178, 0.013539651837524178, 0.013539651837524178, 0.015473887814313346, 0.017408123791102514, 0.019342359767891684, 0.017408123791102514, 0.019342359767891684, 0.0367504835589942, 0.059961315280464215, 0.059961315280464215, 0.05415860735009671, 0.02321083172147002, 0.8684719535783365, 0.8684719535783365, 0.8704061895551257, 0.874274661508704, 0.8762088974854932, 0.8800773694390716, 0.8878143133462283, 0.9013539651837524, 0.9110251450676983, 0.9187620889748549, 0.9226305609284333, 0.9245647969052224, 0.9284332688588007, 0.9303675048355899, 0.9303675048355899, 0.9361702127659575, 0.9458413926499033, 0.9497098646034816, 0.9497098646034816, 0.9458413926499033, 0.9361702127659575, 0.9303675048355899, 0.9303675048355899, 0.9284332688588007, 0.9245647969052224, 0.9226305609284333, 0.9110251450676983, 0.9052224371373307, 0.8955512572533849, 0.8858800773694391, 0.8781431334622823, 0.8762088974854932, 0.874274661508704, 0.8704061895551257, 0.8684719535783365, 0.8684719535783365, 0.02127659574468085, 0.027079303675048357, 0.029013539651837523, 0.029013539651837523, 0.030947775628626693, 0.029013539651837523, 0.029013539651837523, 0.029013539651837523, 0.029013539651837523, 0.029013539651837523, 0.030947775628626693, 0.03288201160541586, 0.03288201160541586, 0.03288201160541586, 0.03481624758220503, 0.0367504835589942, 0.05609284332688588, 0.3152804642166344], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF393.gap.json b/pfam_gap_rates/DUF393.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..924246537d374abdc024e77bb4a2ceb784c97783
--- /dev/null
+++ b/pfam_gap_rates/DUF393.gap.json
@@ -0,0 +1 @@
+{"family": "DUF393", "n_seqs": 908, "length": 118, "gap_rates": [0.19933920704845814, 0.06497797356828194, 0.05506607929515418, 0.05286343612334802, 0.051762114537444934, 0.04955947136563876, 0.04955947136563876, 0.04955947136563876, 0.042951541850220265, 0.042951541850220265, 0.04185022026431718, 0.040748898678414094, 0.03854625550660793, 0.03854625550660793, 0.037444933920704845, 0.034140969162995596, 0.03303964757709251, 0.028634361233480177, 0.024229074889867842, 0.023127753303964757, 0.034140969162995596, 0.03634361233480176, 0.8975770925110133, 0.08480176211453745, 0.04405286343612335, 0.024229074889867842, 0.019823788546255508, 0.018722466960352423, 0.018722466960352423, 0.01762114537444934, 0.016519823788546256, 0.016519823788546256, 0.31828193832599116, 0.05947136563876652, 0.04185022026431718, 0.031938325991189426, 0.028634361233480177, 0.1013215859030837, 0.10352422907488987, 0.34140969162995594, 0.16409691629955947, 0.18061674008810572, 0.12555066079295155, 0.07929515418502203, 0.0605726872246696, 0.03524229074889868, 0.031938325991189426, 0.09691629955947137, 0.016519823788546256, 0.009911894273127754, 0.009911894273127754, 0.00881057268722467, 0.007709251101321586, 0.004405286343612335, 0.005506607929515419, 0.007709251101321586, 0.30506607929515417, 0.5583700440528634, 0.06277533039647577, 0.024229074889867842, 0.012114537444933921, 0.009911894273127754, 0.006607929515418502, 0.9229074889867841, 0.9328193832599119, 0.8711453744493393, 0.006607929515418502, 0.006607929515418502, 0.006607929515418502, 0.006607929515418502, 0.006607929515418502, 0.005506607929515419, 0.005506607929515419, 0.005506607929515419, 0.00881057268722467, 0.007709251101321586, 0.007709251101321586, 0.007709251101321586, 0.007709251101321586, 0.007709251101321586, 0.012114537444933921, 0.013215859030837005, 0.015418502202643172, 0.44933920704845814, 0.19162995594713655, 0.016519823788546256, 0.014317180616740088, 0.014317180616740088, 0.014317180616740088, 0.019823788546255508, 0.016519823788546256, 0.015418502202643172, 0.019823788546255508, 0.019823788546255508, 0.01762114537444934, 0.018722466960352423, 0.019823788546255508, 0.42400881057268724, 0.3766519823788546, 0.024229074889867842, 0.02092511013215859, 0.02092511013215859, 0.02092511013215859, 0.022026431718061675, 0.025330396475770924, 0.028634361233480177, 0.02973568281938326, 0.03303964757709251, 0.04185022026431718, 0.04955947136563876, 0.05726872246696035, 0.06277533039647577, 0.07268722466960352, 0.11674008810572688, 0.16519823788546256, 0.21806167400881057, 0.31277533039647576, 0.5088105726872246], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF3945.gap.json b/pfam_gap_rates/DUF3945.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a3743e1834ce0e7482b8a55f6fb9de0061b1d217
--- /dev/null
+++ b/pfam_gap_rates/DUF3945.gap.json
@@ -0,0 +1 @@
+{"family": "DUF3945", "n_seqs": 176, "length": 65, "gap_rates": [0.625, 0.5965909090909091, 0.5113636363636364, 0.48863636363636365, 0.4715909090909091, 0.4431818181818182, 0.4431818181818182, 0.4431818181818182, 0.4431818181818182, 0.4431818181818182, 0.4431818181818182, 0.4431818181818182, 0.4431818181818182, 0.4431818181818182, 0.4375, 0.4375, 0.4318181818181818, 0.42045454545454547, 0.4034090909090909, 0.39204545454545453, 0.3522727272727273, 0.875, 0.8863636363636364, 0.9261363636363636, 0.9261363636363636, 0.8806818181818182, 0.875, 0.23863636363636365, 0.23295454545454544, 0.20454545454545456, 0.18181818181818182, 0.13636363636363635, 0.0625, 0.06818181818181818, 0.0625, 0.05113636363636364, 0.03409090909090909, 0.011363636363636364, 0.005681818181818182, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.005681818181818182, 0.011363636363636364, 0.017045454545454544, 0.07386363636363637, 0.07954545454545454, 0.125, 0.10795454545454546, 0.11363636363636363, 0.14204545454545456, 0.1590909090909091, 0.2215909090909091, 0.35795454545454547], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4005.gap.json b/pfam_gap_rates/DUF4005.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..4bf26f788e2e2afd2be30533eef0c9c1fe4d90da
--- /dev/null
+++ b/pfam_gap_rates/DUF4005.gap.json
@@ -0,0 +1 @@
+{"family": "DUF4005", "n_seqs": 449, "length": 156, "gap_rates": [0.8507795100222717, 0.7973273942093542, 0.7906458797327395, 0.7839643652561247, 0.7839643652561247, 0.755011135857461, 0.7216035634743875, 0.6948775055679287, 0.6703786191536748, 0.6547884187082406, 0.6035634743875279, 0.5679287305122495, 0.5879732739420935, 0.5968819599109132, 0.45434298440979953, 0.42761692650334077, 0.2873051224944321, 0.8173719376391982, 0.8552338530066815, 0.9220489977728286, 0.9487750556792873, 0.933184855233853, 0.8930957683741648, 0.8285077951002228, 0.8062360801781737, 0.2071269487750557, 0.0757238307349666, 0.40311804008908686, 0.4209354120267261, 0.4521158129175947, 0.49443207126948774, 0.5501113585746102, 0.6080178173719376, 0.732739420935412, 0.8084632516703786, 0.8507795100222717, 0.8708240534521158, 0.8953229398663697, 0.9242761692650334, 0.9376391982182628, 0.9487750556792873, 0.9376391982182628, 0.9064587973273942, 0.8797327394209354, 0.8552338530066815, 0.8329621380846325, 0.7594654788418709, 0.7193763919821826, 0.5879732739420935, 0.5211581291759465, 0.47216035634743875, 0.4365256124721604, 0.4142538975501114, 0.35634743875278396, 0.22048997772828507, 0.14253897550111358, 0.7527839643652561, 0.7594654788418709, 0.7839643652561247, 0.8129175946547884, 0.8396436525612472, 0.8663697104677061, 0.9086859688195991, 0.9420935412026726, 0.9465478841870824, 0.9354120267260579, 0.8841870824053452, 0.8530066815144766, 0.8262806236080178, 0.7973273942093542, 0.7706013363028953, 0.7527839643652561, 0.7171492204899778, 0.024498886414253896, 0.013363028953229399, 0.011135857461024499, 0.008908685968819599, 0.008908685968819599, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0066815144766146995, 0.017817371937639197, 0.017817371937639197, 0.008908685968819599, 0.013363028953229399, 0.008908685968819599, 0.008908685968819599, 0.011135857461024499, 0.013363028953229399, 0.8975501113585747, 0.9487750556792873, 0.7616926503340757, 0.0779510022271715, 0.09799554565701558, 0.1091314031180401, 0.0801781737193764, 0.08685968819599109, 0.0957683741648107, 0.10022271714922049, 0.10022271714922049, 0.7661469933184856, 0.8374164810690423, 0.9220489977728286, 0.9487750556792873, 0.9042316258351893, 0.8017817371937639, 0.7238307349665924, 0.4142538975501114, 0.45879732739420936, 0.8864142538975501, 0.7438752783964365, 0.20935412026726058, 0.155902004454343, 0.15367483296213807, 0.1514476614699332, 0.16258351893095768, 0.16926503340757237, 0.18930957683741648, 0.20935412026726058, 0.48329621380846327, 0.37861915367483295, 0.4209354120267261, 0.44766146993318484, 0.5233853006681515, 0.5523385300668151, 0.5634743875278396, 0.5746102449888641, 0.5746102449888641, 0.5946547884187082, 0.6369710467706013, 0.6503340757238307, 0.7438752783964365, 0.7438752783964365, 0.7572383073496659, 0.7728285077951003, 0.77728285077951, 0.7817371937639198, 0.7884187082405345, 0.7973273942093542, 0.8017817371937639, 0.8062360801781737, 0.8151447661469933, 0.8307349665924276, 0.8685968819599109, 0.888641425389755, 0.9175946547884187, 0.9265033407572383], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF401.gap.json b/pfam_gap_rates/DUF401.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a084d4e86a46011845925652c3a30386f81ebc16
--- /dev/null
+++ b/pfam_gap_rates/DUF401.gap.json
@@ -0,0 +1 @@
+{"family": "DUF401", "n_seqs": 114, "length": 444, "gap_rates": [0.9473684210526315, 0.9122807017543859, 0.8333333333333334, 0.6403508771929824, 0.5789473684210527, 0.5087719298245614, 0.41228070175438597, 0.35964912280701755, 0.3508771929824561, 0.2982456140350877, 0.3157894736842105, 0.2982456140350877, 0.2631578947368421, 0.2631578947368421, 0.2719298245614035, 0.2631578947368421, 0.23684210526315788, 0.9385964912280702, 0.2631578947368421, 0.8859649122807017, 0.24561403508771928, 0.9385964912280702, 0.23684210526315788, 0.21052631578947367, 0.21052631578947367, 0.21052631578947367, 0.21052631578947367, 0.21052631578947367, 0.21052631578947367, 0.21052631578947367, 0.21052631578947367, 0.21052631578947367, 0.21052631578947367, 0.21052631578947367, 0.21929824561403508, 0.21052631578947367, 0.21929824561403508, 0.20175438596491227, 0.21052631578947367, 0.22807017543859648, 0.8245614035087719, 0.5614035087719298, 0.21929824561403508, 0.20175438596491227, 0.19298245614035087, 0.19298245614035087, 0.21052631578947367, 0.20175438596491227, 0.20175438596491227, 0.19298245614035087, 0.18421052631578946, 0.18421052631578946, 0.9473684210526315, 0.17543859649122806, 0.9298245614035088, 0.2631578947368421, 0.21929824561403508, 0.18421052631578946, 0.17543859649122806, 0.16666666666666666, 0.18421052631578946, 0.15789473684210525, 0.14912280701754385, 0.15789473684210525, 0.15789473684210525, 0.15789473684210525, 0.14912280701754385, 0.14912280701754385, 0.14912280701754385, 0.14912280701754385, 0.14035087719298245, 0.14035087719298245, 0.14035087719298245, 0.15789473684210525, 0.15789473684210525, 0.14035087719298245, 0.14035087719298245, 0.14912280701754385, 0.14035087719298245, 0.14035087719298245, 0.14035087719298245, 0.5526315789473685, 0.14912280701754385, 0.14035087719298245, 0.14035087719298245, 0.14035087719298245, 0.14035087719298245, 0.14035087719298245, 0.14035087719298245, 0.14035087719298245, 0.14035087719298245, 0.14035087719298245, 0.14035087719298245, 0.17543859649122806, 0.14035087719298245, 0.14912280701754385, 0.9035087719298246, 0.868421052631579, 0.14035087719298245, 0.8508771929824561, 0.8245614035087719, 0.14035087719298245, 0.9473684210526315, 0.13157894736842105, 0.868421052631579, 0.8421052631578947, 0.13157894736842105, 0.13157894736842105, 0.12280701754385964, 0.12280701754385964, 0.9473684210526315, 0.9473684210526315, 0.12280701754385964, 0.9473684210526315, 0.9210526315789473, 0.11403508771929824, 0.11403508771929824, 0.11403508771929824, 0.11403508771929824, 0.11403508771929824, 0.11403508771929824, 0.11403508771929824, 0.11403508771929824, 0.11403508771929824, 0.11403508771929824, 0.11403508771929824, 0.11403508771929824, 0.11403508771929824, 0.11403508771929824, 0.11403508771929824, 0.11403508771929824, 0.11403508771929824, 0.11403508771929824, 0.11403508771929824, 0.11403508771929824, 0.11403508771929824, 0.11403508771929824, 0.11403508771929824, 0.11403508771929824, 0.11403508771929824, 0.11403508771929824, 0.11403508771929824, 0.2894736842105263, 0.14035087719298245, 0.11403508771929824, 0.11403508771929824, 0.11403508771929824, 0.11403508771929824, 0.11403508771929824, 0.11403508771929824, 0.12280701754385964, 0.14035087719298245, 0.12280701754385964, 0.12280701754385964, 0.12280701754385964, 0.11403508771929824, 0.11403508771929824, 0.11403508771929824, 0.11403508771929824, 0.11403508771929824, 0.11403508771929824, 0.11403508771929824, 0.11403508771929824, 0.11403508771929824, 0.11403508771929824, 0.11403508771929824, 0.12280701754385964, 0.12280701754385964, 0.12280701754385964, 0.12280701754385964, 0.12280701754385964, 0.12280701754385964, 0.12280701754385964, 0.12280701754385964, 0.12280701754385964, 0.12280701754385964, 0.13157894736842105, 0.13157894736842105, 0.13157894736842105, 0.13157894736842105, 0.14035087719298245, 0.14035087719298245, 0.14035087719298245, 0.14035087719298245, 0.14035087719298245, 0.14912280701754385, 0.14912280701754385, 0.14035087719298245, 0.14035087719298245, 0.14035087719298245, 0.14035087719298245, 0.14035087719298245, 0.14035087719298245, 0.14912280701754385, 0.14035087719298245, 0.14035087719298245, 0.15789473684210525, 0.14035087719298245, 0.14035087719298245, 0.8859649122807017, 0.45614035087719296, 0.14035087719298245, 0.14035087719298245, 0.14035087719298245, 0.9473684210526315, 0.9473684210526315, 0.9385964912280702, 0.15789473684210525, 0.18421052631578946, 0.9210526315789473, 0.9385964912280702, 0.8771929824561403, 0.20175438596491227, 0.20175438596491227, 0.20175438596491227, 0.19298245614035087, 0.9473684210526315, 0.9298245614035088, 0.19298245614035087, 0.19298245614035087, 0.9473684210526315, 0.9473684210526315, 0.9298245614035088, 0.19298245614035087, 0.9473684210526315, 0.20175438596491227, 0.9298245614035088, 0.9035087719298246, 0.20175438596491227, 0.9035087719298246, 0.9298245614035088, 0.9210526315789473, 0.8771929824561403, 0.19298245614035087, 0.19298245614035087, 0.9385964912280702, 0.9122807017543859, 0.2894736842105263, 0.20175438596491227, 0.19298245614035087, 0.18421052631578946, 0.9473684210526315, 0.17543859649122806, 0.18421052631578946, 0.9210526315789473, 0.19298245614035087, 0.9473684210526315, 0.19298245614035087, 0.18421052631578946, 0.19298245614035087, 0.17543859649122806, 0.18421052631578946, 0.18421052631578946, 0.17543859649122806, 0.18421052631578946, 0.17543859649122806, 0.19298245614035087, 0.21929824561403508, 0.20175438596491227, 0.19298245614035087, 0.19298245614035087, 0.9385964912280702, 0.21929824561403508, 0.20175438596491227, 0.20175438596491227, 0.9385964912280702, 0.17543859649122806, 0.9298245614035088, 0.15789473684210525, 0.14912280701754385, 0.14035087719298245, 0.14035087719298245, 0.14035087719298245, 0.14035087719298245, 0.14035087719298245, 0.14035087719298245, 0.15789473684210525, 0.16666666666666666, 0.15789473684210525, 0.16666666666666666, 0.15789473684210525, 0.9473684210526315, 0.14912280701754385, 0.15789473684210525, 0.14912280701754385, 0.14912280701754385, 0.13157894736842105, 0.14912280701754385, 0.13157894736842105, 0.14912280701754385, 0.15789473684210525, 0.13157894736842105, 0.13157894736842105, 0.13157894736842105, 0.14035087719298245, 0.14035087719298245, 0.14035087719298245, 0.14912280701754385, 0.14035087719298245, 0.13157894736842105, 0.14912280701754385, 0.13157894736842105, 0.9385964912280702, 0.9473684210526315, 0.8508771929824561, 0.12280701754385964, 0.13157894736842105, 0.12280701754385964, 0.12280701754385964, 0.12280701754385964, 0.12280701754385964, 0.12280701754385964, 0.12280701754385964, 0.12280701754385964, 0.11403508771929824, 0.11403508771929824, 0.12280701754385964, 0.12280701754385964, 0.12280701754385964, 0.12280701754385964, 0.14035087719298245, 0.13157894736842105, 0.13157894736842105, 0.12280701754385964, 0.12280701754385964, 0.12280701754385964, 0.12280701754385964, 0.12280701754385964, 0.12280701754385964, 0.5175438596491229, 0.13157894736842105, 0.14912280701754385, 0.15789473684210525, 0.17543859649122806, 0.9210526315789473, 0.12280701754385964, 0.9385964912280702, 0.14035087719298245, 0.13157894736842105, 0.14035087719298245, 0.14912280701754385, 0.14912280701754385, 0.14035087719298245, 0.13157894736842105, 0.14912280701754385, 0.14035087719298245, 0.14912280701754385, 0.14912280701754385, 0.15789473684210525, 0.13157894736842105, 0.12280701754385964, 0.13157894736842105, 0.12280701754385964, 0.12280701754385964, 0.13157894736842105, 0.13157894736842105, 0.12280701754385964, 0.12280701754385964, 0.14035087719298245, 0.13157894736842105, 0.12280701754385964, 0.12280701754385964, 0.12280701754385964, 0.12280701754385964, 0.12280701754385964, 0.12280701754385964, 0.12280701754385964, 0.12280701754385964, 0.12280701754385964, 0.12280701754385964, 0.12280701754385964, 0.12280701754385964, 0.13157894736842105, 0.13157894736842105, 0.14035087719298245, 0.13157894736842105, 0.13157894736842105, 0.9298245614035088, 0.34210526315789475, 0.3157894736842105, 0.2894736842105263, 0.9473684210526315, 0.9298245614035088, 0.24561403508771928, 0.2719298245614035, 0.23684210526315788, 0.16666666666666666, 0.14912280701754385, 0.14912280701754385, 0.16666666666666666, 0.16666666666666666, 0.14912280701754385, 0.13157894736842105, 0.13157894736842105, 0.13157894736842105, 0.14035087719298245, 0.14035087719298245, 0.14035087719298245, 0.13157894736842105, 0.13157894736842105, 0.13157894736842105, 0.13157894736842105, 0.13157894736842105, 0.13157894736842105, 0.13157894736842105, 0.13157894736842105, 0.13157894736842105, 0.13157894736842105, 0.13157894736842105, 0.13157894736842105, 0.13157894736842105, 0.13157894736842105, 0.13157894736842105, 0.13157894736842105, 0.13157894736842105, 0.13157894736842105, 0.13157894736842105, 0.13157894736842105, 0.13157894736842105, 0.13157894736842105, 0.13157894736842105, 0.13157894736842105, 0.14035087719298245, 0.13157894736842105, 0.16666666666666666, 0.14035087719298245, 0.15789473684210525, 0.16666666666666666, 0.15789473684210525, 0.16666666666666666, 0.18421052631578946, 0.18421052631578946, 0.21052631578947367, 0.24561403508771928, 0.2807017543859649, 0.35964912280701755, 0.4298245614035088, 0.4824561403508772, 0.5526315789473685, 0.6052631578947368, 0.6842105263157895, 0.7807017543859649, 0.868421052631579, 0.9473684210526315], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4057.gap.json b/pfam_gap_rates/DUF4057.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..36e9cdc967f7dfd9aafa2724197337b7d868fbc6
--- /dev/null
+++ b/pfam_gap_rates/DUF4057.gap.json
@@ -0,0 +1 @@
+{"family": "DUF4057", "n_seqs": 106, "length": 313, "gap_rates": [0.4528301886792453, 0.42452830188679247, 0.36792452830188677, 0.3584905660377358, 0.3584905660377358, 0.3490566037735849, 0.33962264150943394, 0.33962264150943394, 0.33962264150943394, 0.33962264150943394, 0.33962264150943394, 0.33962264150943394, 0.33962264150943394, 0.33962264150943394, 0.33962264150943394, 0.33962264150943394, 0.33962264150943394, 0.33962264150943394, 0.33962264150943394, 0.33962264150943394, 0.3584905660377358, 0.3584905660377358, 0.3584905660377358, 0.33962264150943394, 0.3490566037735849, 0.3490566037735849, 0.3867924528301887, 0.41509433962264153, 0.8584905660377359, 0.9150943396226415, 0.8207547169811321, 0.6132075471698113, 0.44339622641509435, 0.3490566037735849, 0.330188679245283, 0.29245283018867924, 0.29245283018867924, 0.29245283018867924, 0.2830188679245283, 0.8301886792452831, 0.2830188679245283, 0.27358490566037735, 0.27358490566037735, 0.27358490566037735, 0.27358490566037735, 0.27358490566037735, 0.2830188679245283, 0.2830188679245283, 0.2830188679245283, 0.29245283018867924, 0.29245283018867924, 0.27358490566037735, 0.27358490566037735, 0.2641509433962264, 0.27358490566037735, 0.27358490566037735, 0.27358490566037735, 0.27358490566037735, 0.27358490566037735, 0.29245283018867924, 0.27358490566037735, 0.27358490566037735, 0.27358490566037735, 0.27358490566037735, 0.27358490566037735, 0.27358490566037735, 0.2641509433962264, 0.9056603773584906, 0.9056603773584906, 0.25471698113207547, 0.27358490566037735, 0.27358490566037735, 0.2830188679245283, 0.2641509433962264, 0.2641509433962264, 0.2641509433962264, 0.2641509433962264, 0.24528301886792453, 0.24528301886792453, 0.24528301886792453, 0.22641509433962265, 0.22641509433962265, 0.22641509433962265, 0.22641509433962265, 0.22641509433962265, 0.22641509433962265, 0.2169811320754717, 0.2169811320754717, 0.2169811320754717, 0.22641509433962265, 0.22641509433962265, 0.27358490566037735, 0.27358490566037735, 0.27358490566037735, 0.2830188679245283, 0.2830188679245283, 0.2358490566037736, 0.2358490566037736, 0.330188679245283, 0.330188679245283, 0.24528301886792453, 0.2830188679245283, 0.330188679245283, 0.7924528301886793, 0.7264150943396226, 0.330188679245283, 0.2830188679245283, 0.2358490566037736, 0.2358490566037736, 0.24528301886792453, 0.24528301886792453, 0.22641509433962265, 0.2169811320754717, 0.25471698113207547, 0.19811320754716982, 0.22641509433962265, 0.22641509433962265, 0.24528301886792453, 0.2641509433962264, 0.2358490566037736, 0.22641509433962265, 0.20754716981132076, 0.19811320754716982, 0.18867924528301888, 0.18867924528301888, 0.18867924528301888, 0.18867924528301888, 0.18867924528301888, 0.1792452830188679, 0.1792452830188679, 0.1792452830188679, 0.1792452830188679, 0.18867924528301888, 0.18867924528301888, 0.18867924528301888, 0.19811320754716982, 0.19811320754716982, 0.19811320754716982, 0.20754716981132076, 0.20754716981132076, 0.20754716981132076, 0.20754716981132076, 0.20754716981132076, 0.20754716981132076, 0.20754716981132076, 0.20754716981132076, 0.20754716981132076, 0.20754716981132076, 0.20754716981132076, 0.20754716981132076, 0.20754716981132076, 0.20754716981132076, 0.20754716981132076, 0.20754716981132076, 0.22641509433962265, 0.22641509433962265, 0.2830188679245283, 0.20754716981132076, 0.19811320754716982, 0.20754716981132076, 0.20754716981132076, 0.20754716981132076, 0.20754716981132076, 0.20754716981132076, 0.20754716981132076, 0.20754716981132076, 0.20754716981132076, 0.20754716981132076, 0.20754716981132076, 0.20754716981132076, 0.20754716981132076, 0.20754716981132076, 0.20754716981132076, 0.20754716981132076, 0.20754716981132076, 0.20754716981132076, 0.20754716981132076, 0.20754716981132076, 0.20754716981132076, 0.2169811320754717, 0.20754716981132076, 0.20754716981132076, 0.22641509433962265, 0.2169811320754717, 0.3584905660377358, 0.33962264150943394, 0.2358490566037736, 0.25471698113207547, 0.25471698113207547, 0.3584905660377358, 0.8490566037735849, 0.3584905660377358, 0.33962264150943394, 0.2641509433962264, 0.27358490566037735, 0.24528301886792453, 0.24528301886792453, 0.25471698113207547, 0.27358490566037735, 0.2830188679245283, 0.2830188679245283, 0.3113207547169811, 0.3584905660377358, 0.3867924528301887, 0.3867924528301887, 0.3867924528301887, 0.4339622641509434, 0.4339622641509434, 0.4339622641509434, 0.4056603773584906, 0.4339622641509434, 0.5094339622641509, 0.3867924528301887, 0.36792452830188677, 0.37735849056603776, 0.3867924528301887, 0.3867924528301887, 0.36792452830188677, 0.3584905660377358, 0.33962264150943394, 0.5188679245283019, 0.5094339622641509, 0.4811320754716981, 0.5, 0.3584905660377358, 0.37735849056603776, 0.3867924528301887, 0.39622641509433965, 0.330188679245283, 0.3113207547169811, 0.29245283018867924, 0.29245283018867924, 0.8679245283018868, 0.8679245283018868, 0.8584905660377359, 0.27358490566037735, 0.2641509433962264, 0.27358490566037735, 0.25471698113207547, 0.24528301886792453, 0.24528301886792453, 0.24528301886792453, 0.2169811320754717, 0.20754716981132076, 0.20754716981132076, 0.19811320754716982, 0.19811320754716982, 0.19811320754716982, 0.19811320754716982, 0.19811320754716982, 0.19811320754716982, 0.19811320754716982, 0.19811320754716982, 0.19811320754716982, 0.19811320754716982, 0.19811320754716982, 0.2169811320754717, 0.19811320754716982, 0.19811320754716982, 0.19811320754716982, 0.19811320754716982, 0.19811320754716982, 0.2169811320754717, 0.9245283018867925, 0.8773584905660378, 0.22641509433962265, 0.20754716981132076, 0.19811320754716982, 0.20754716981132076, 0.20754716981132076, 0.20754716981132076, 0.19811320754716982, 0.19811320754716982, 0.19811320754716982, 0.19811320754716982, 0.19811320754716982, 0.18867924528301888, 0.18867924528301888, 0.18867924528301888, 0.18867924528301888, 0.18867924528301888, 0.18867924528301888, 0.18867924528301888, 0.16981132075471697, 0.16981132075471697, 0.16981132075471697, 0.16981132075471697, 0.16981132075471697, 0.16981132075471697, 0.16981132075471697, 0.16981132075471697, 0.18867924528301888, 0.18867924528301888, 0.18867924528301888, 0.18867924528301888, 0.18867924528301888, 0.18867924528301888, 0.19811320754716982, 0.19811320754716982, 0.18867924528301888, 0.19811320754716982, 0.18867924528301888, 0.18867924528301888, 0.19811320754716982, 0.19811320754716982, 0.19811320754716982, 0.19811320754716982, 0.19811320754716982, 0.19811320754716982, 0.19811320754716982, 0.20754716981132076, 0.20754716981132076, 0.32075471698113206], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4061.gap.json b/pfam_gap_rates/DUF4061.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a081be77ab89005331854ddb33771f2af7ce1d58
--- /dev/null
+++ b/pfam_gap_rates/DUF4061.gap.json
@@ -0,0 +1 @@
+{"family": "DUF4061", "n_seqs": 114, "length": 105, "gap_rates": [0.40350877192982454, 0.2543859649122807, 0.20175438596491227, 0.16666666666666666, 0.15789473684210525, 0.11403508771929824, 0.07017543859649122, 0.07017543859649122, 0.06140350877192982, 0.05263157894736842, 0.05263157894736842, 0.043859649122807015, 0.043859649122807015, 0.043859649122807015, 0.043859649122807015, 0.043859649122807015, 0.043859649122807015, 0.03508771929824561, 0.03508771929824561, 0.03508771929824561, 0.03508771929824561, 0.03508771929824561, 0.03508771929824561, 0.03508771929824561, 0.03508771929824561, 0.03508771929824561, 0.03508771929824561, 0.02631578947368421, 0.20175438596491227, 0.9035087719298246, 0.9035087719298246, 0.017543859649122806, 0.017543859649122806, 0.017543859649122806, 0.017543859649122806, 0.008771929824561403, 0.02631578947368421, 0.02631578947368421, 0.02631578947368421, 0.02631578947368421, 0.02631578947368421, 0.02631578947368421, 0.02631578947368421, 0.02631578947368421, 0.02631578947368421, 0.02631578947368421, 0.02631578947368421, 0.02631578947368421, 0.02631578947368421, 0.02631578947368421, 0.02631578947368421, 0.02631578947368421, 0.02631578947368421, 0.02631578947368421, 0.02631578947368421, 0.02631578947368421, 0.02631578947368421, 0.02631578947368421, 0.07017543859649122, 0.07894736842105263, 0.06140350877192982, 0.8421052631578947, 0.8596491228070176, 0.8771929824561403, 0.8508771929824561, 0.7982456140350878, 0.08771929824561403, 0.11403508771929824, 0.24561403508771928, 0.19298245614035087, 0.21929824561403508, 0.2719298245614035, 0.39473684210526316, 0.2719298245614035, 0.7982456140350878, 0.8245614035087719, 0.8245614035087719, 0.8421052631578947, 0.9035087719298246, 0.8947368421052632, 0.8333333333333334, 0.8245614035087719, 0.8157894736842105, 0.7807017543859649, 0.10526315789473684, 0.10526315789473684, 0.10526315789473684, 0.10526315789473684, 0.10526315789473684, 0.10526315789473684, 0.11403508771929824, 0.11403508771929824, 0.11403508771929824, 0.11403508771929824, 0.11403508771929824, 0.14912280701754385, 0.18421052631578946, 0.21052631578947367, 0.21929824561403508, 0.21929824561403508, 0.23684210526315788, 0.30701754385964913, 0.35964912280701755, 0.38596491228070173, 0.5175438596491229], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4078.gap.json b/pfam_gap_rates/DUF4078.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a38a2fa2f49e94aa9488706721fe2b89ec29663f
--- /dev/null
+++ b/pfam_gap_rates/DUF4078.gap.json
@@ -0,0 +1 @@
+{"family": "DUF4078", "n_seqs": 194, "length": 89, "gap_rates": [0.6804123711340206, 0.4639175257731959, 0.4175257731958763, 0.3711340206185567, 0.3402061855670103, 0.31958762886597936, 0.29381443298969073, 0.28865979381443296, 0.28350515463917525, 0.23195876288659795, 0.211340206185567, 0.22164948453608246, 0.18556701030927836, 0.13917525773195877, 0.15979381443298968, 0.21649484536082475, 0.8247422680412371, 0.06701030927835051, 0.05154639175257732, 0.05154639175257732, 0.05154639175257732, 0.05154639175257732, 0.05154639175257732, 0.04639175257731959, 0.6701030927835051, 0.6701030927835051, 0.041237113402061855, 0.030927835051546393, 0.030927835051546393, 0.015463917525773196, 0.010309278350515464, 0.005154639175257732, 0.005154639175257732, 0.0, 0.0, 0.005154639175257732, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.005154639175257732, 0.0, 0.005154639175257732, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.005154639175257732, 0.005154639175257732, 0.005154639175257732, 0.005154639175257732, 0.005154639175257732, 0.005154639175257732, 0.010309278350515464, 0.020618556701030927, 0.0979381443298969, 0.10309278350515463, 0.1134020618556701, 0.1134020618556701, 0.1134020618556701, 0.1134020618556701, 0.1134020618556701, 0.12886597938144329, 0.12886597938144329, 0.12886597938144329, 0.12886597938144329, 0.13917525773195877, 0.13917525773195877, 0.14432989690721648, 0.15463917525773196, 0.15463917525773196, 0.16494845360824742, 0.17010309278350516, 0.18041237113402062, 0.23195876288659795, 0.36597938144329895], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4081.gap.json b/pfam_gap_rates/DUF4081.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..50e0540c130b3aa5fe139ed425143201d26e4f7b
--- /dev/null
+++ b/pfam_gap_rates/DUF4081.gap.json
@@ -0,0 +1 @@
+{"family": "DUF4081", "n_seqs": 157, "length": 118, "gap_rates": [0.267515923566879, 0.1910828025477707, 0.12101910828025478, 0.10191082802547771, 0.09554140127388536, 0.08917197452229299, 0.2611464968152866, 0.2229299363057325, 0.9299363057324841, 0.9490445859872612, 0.8853503184713376, 0.01910828025477707, 0.012738853503184714, 0.012738853503184714, 0.012738853503184714, 0.012738853503184714, 0.012738853503184714, 0.012738853503184714, 0.012738853503184714, 0.006369426751592357, 0.006369426751592357, 0.006369426751592357, 0.006369426751592357, 0.006369426751592357, 0.006369426751592357, 0.006369426751592357, 0.006369426751592357, 0.006369426751592357, 0.006369426751592357, 0.9044585987261147, 0.9235668789808917, 0.8980891719745223, 0.012738853503184714, 0.01910828025477707, 0.01910828025477707, 0.006369426751592357, 0.006369426751592357, 0.006369426751592357, 0.006369426751592357, 0.006369426751592357, 0.006369426751592357, 0.006369426751592357, 0.006369426751592357, 0.01910828025477707, 0.006369426751592357, 0.006369426751592357, 0.012738853503184714, 0.006369426751592357, 0.07006369426751592, 0.006369426751592357, 0.006369426751592357, 0.006369426751592357, 0.006369426751592357, 0.006369426751592357, 0.006369426751592357, 0.006369426751592357, 0.006369426751592357, 0.006369426751592357, 0.006369426751592357, 0.006369426751592357, 0.006369426751592357, 0.006369426751592357, 0.006369426751592357, 0.006369426751592357, 0.006369426751592357, 0.006369426751592357, 0.006369426751592357, 0.006369426751592357, 0.006369426751592357, 0.006369426751592357, 0.9490445859872612, 0.9490445859872612, 0.9490445859872612, 0.9490445859872612, 0.044585987261146494, 0.044585987261146494, 0.012738853503184714, 0.006369426751592357, 0.012738853503184714, 0.012738853503184714, 0.025477707006369428, 0.025477707006369428, 0.025477707006369428, 0.025477707006369428, 0.03184713375796178, 0.044585987261146494, 0.03184713375796178, 0.03184713375796178, 0.03184713375796178, 0.03184713375796178, 0.03184713375796178, 0.03821656050955414, 0.03821656050955414, 0.03821656050955414, 0.03821656050955414, 0.03821656050955414, 0.044585987261146494, 0.9044585987261147, 0.9235668789808917, 0.7834394904458599, 0.044585987261146494, 0.044585987261146494, 0.044585987261146494, 0.050955414012738856, 0.06369426751592357, 0.05732484076433121, 0.05732484076433121, 0.05732484076433121, 0.05732484076433121, 0.05732484076433121, 0.06369426751592357, 0.06369426751592357, 0.06369426751592357, 0.06369426751592357, 0.07643312101910828, 0.12101910828025478, 0.1910828025477707, 0.6305732484076433], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4097.gap.json b/pfam_gap_rates/DUF4097.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..41567c04436ac7606f3c51371080d58c1844a301
--- /dev/null
+++ b/pfam_gap_rates/DUF4097.gap.json
@@ -0,0 +1 @@
+{"family": "DUF4097", "n_seqs": 1192, "length": 330, "gap_rates": [0.8145973154362416, 0.7239932885906041, 0.6669463087248322, 0.6174496644295302, 0.6031879194630873, 0.5855704697986577, 0.5838926174496645, 0.5788590604026845, 0.587248322147651, 0.5553691275167785, 0.5436241610738255, 0.5167785234899329, 0.5109060402684564, 0.5067114093959731, 0.5033557046979866, 0.5016778523489933, 0.4983221476510067, 0.49580536912751677, 0.4924496644295302, 0.535234899328859, 0.5335570469798657, 0.5, 0.4924496644295302, 0.4815436241610738, 0.4798657718120805, 0.4790268456375839, 0.4823825503355705, 0.48070469798657717, 0.47651006711409394, 0.4714765100671141, 0.4697986577181208, 0.46895973154362414, 0.4664429530201342, 0.46308724832214765, 0.4639261744966443, 0.47231543624161076, 0.5083892617449665, 0.5461409395973155, 0.5889261744966443, 0.8204697986577181, 0.9161073825503355, 0.9278523489932886, 0.8682885906040269, 0.7214765100671141, 0.436241610738255, 0.42449664429530204, 0.41778523489932884, 0.41359060402684567, 0.41191275167785235, 0.4110738255033557, 0.41191275167785235, 0.4077181208053691, 0.40687919463087246, 0.4077181208053691, 0.40687919463087246, 0.4110738255033557, 0.41359060402684567, 0.41359060402684567, 0.4161073825503356, 0.412751677852349, 0.42701342281879195, 0.5184563758389261, 0.5369127516778524, 0.6216442953020134, 0.7281879194630873, 0.7575503355704698, 0.8682885906040269, 0.9144295302013423, 0.9421140939597316, 0.9286912751677853, 0.8926174496644296, 0.8431208053691275, 0.738255033557047, 0.5041946308724832, 0.4463087248322148, 0.401006711409396, 0.3624161073825503, 0.3548657718120805, 0.34563758389261745, 0.33976510067114096, 0.3296979865771812, 0.32298657718120805, 0.30956375838926176, 0.30033557046979864, 0.29949664429530204, 0.29697986577181207, 0.2953020134228188, 0.2961409395973154, 0.2961409395973154, 0.2961409395973154, 0.7290268456375839, 0.4412751677852349, 0.3976510067114094, 0.8733221476510067, 0.8766778523489933, 0.8808724832214765, 0.8850671140939598, 0.8859060402684564, 0.886744966442953, 0.8909395973154363, 0.8926174496644296, 0.889261744966443, 0.8859060402684564, 0.8859060402684564, 0.8850671140939598, 0.8808724832214765, 0.875, 0.8733221476510067, 0.2625838926174497, 0.25671140939597314, 0.25419463087248323, 0.24916107382550334, 0.2424496644295302, 0.23993288590604026, 0.23909395973154363, 0.23573825503355705, 0.24161073825503357, 0.23909395973154363, 0.23406040268456377, 0.23070469798657717, 0.2516778523489933, 0.2651006711409396, 0.8422818791946308, 0.8766778523489933, 0.889261744966443, 0.9060402684563759, 0.9119127516778524, 0.915268456375839, 0.9194630872483222, 0.9261744966442953, 0.947986577181208, 0.9345637583892618, 0.9228187919463087, 0.9177852348993288, 0.9135906040268457, 0.9093959731543624, 0.9001677852348994, 0.8850671140939598, 0.8708053691275168, 0.7793624161073825, 0.35570469798657717, 0.29446308724832215, 0.22483221476510068, 0.2197986577181208, 0.19463087248322147, 0.17197986577181207, 0.1552013422818792, 0.15016778523489932, 0.14681208053691275, 0.1417785234899329, 0.13926174496644295, 0.13842281879194632, 0.1342281879194631, 0.12835570469798657, 0.12919463087248323, 0.12751677852348994, 0.13003355704697986, 0.13087248322147652, 0.12919463087248323, 0.12751677852348994, 0.13842281879194632, 0.14429530201342283, 0.8901006711409396, 0.8984899328859061, 0.9010067114093959, 0.9068791946308725, 0.915268456375839, 0.9169463087248322, 0.9203020134228188, 0.924496644295302, 0.9362416107382551, 0.9211409395973155, 0.9177852348993288, 0.9161073825503355, 0.9144295302013423, 0.9026845637583892, 0.8993288590604027, 0.8934563758389261, 0.8691275167785235, 0.13338926174496643, 0.17869127516778524, 0.12080536912751678, 0.08808724832214765, 0.08053691275167785, 0.07046979865771812, 0.06711409395973154, 0.06795302013422819, 0.0662751677852349, 0.06543624161073826, 0.0662751677852349, 0.06543624161073826, 0.061241610738255035, 0.06375838926174497, 0.06711409395973154, 0.0738255033557047, 0.08557046979865772, 0.09899328859060402, 0.12835570469798657, 0.17953020134228187, 0.1669463087248322, 0.10570469798657718, 0.8758389261744967, 0.06963087248322147, 0.06543624161073826, 0.0587248322147651, 0.051174496644295304, 0.051174496644295304, 0.051174496644295304, 0.04949664429530201, 0.050335570469798654, 0.04949664429530201, 0.051174496644295304, 0.05285234899328859, 0.05536912751677853, 0.06040268456375839, 0.06963087248322147, 0.09312080536912752, 0.07634228187919463, 0.0738255033557047, 0.07550335570469799, 0.4941275167785235, 0.9337248322147651, 0.9437919463087249, 0.9454697986577181, 0.9496644295302014, 0.9496644295302014, 0.9471476510067114, 0.9454697986577181, 0.9395973154362416, 0.9135906040268457, 0.08557046979865772, 0.08473154362416108, 0.08557046979865772, 0.08473154362416108, 0.08473154362416108, 0.08473154362416108, 0.08473154362416108, 0.08557046979865772, 0.08557046979865772, 0.08976510067114093, 0.09395973154362416, 0.09479865771812081, 0.10234899328859061, 0.20889261744966442, 0.8649328859060402, 0.1552013422818792, 0.13842281879194632, 0.13171140939597314, 0.13842281879194632, 0.2575503355704698, 0.1476510067114094, 0.1342281879194631, 0.9471476510067114, 0.13087248322147652, 0.13003355704697986, 0.13003355704697986, 0.13003355704697986, 0.13171140939597314, 0.12919463087248323, 0.13758389261744966, 0.1401006711409396, 0.14261744966442952, 0.15016778523489932, 0.15436241610738255, 0.17281879194630873, 0.18540268456375839, 0.19798657718120805, 0.30788590604026844, 0.28691275167785235, 0.7818791946308725, 0.2197986577181208, 0.2105704697986577, 0.21140939597315436, 0.2105704697986577, 0.21224832214765102, 0.2139261744966443, 0.21728187919463088, 0.21728187919463088, 0.22063758389261745, 0.2214765100671141, 0.2197986577181208, 0.22399328859060402, 0.22483221476510068, 0.22818791946308725, 0.23070469798657717, 0.23909395973154363, 0.25, 0.27181208053691275, 0.7843959731543624, 0.863255033557047, 0.927013422818792, 0.9379194630872483, 0.8968120805369127, 0.8330536912751678, 0.6879194630872483, 0.6065436241610739, 0.5989932885906041, 0.5796979865771812, 0.5528523489932886, 0.5285234899328859, 0.5033557046979866, 0.48070469798657717, 0.4748322147651007, 0.42953020134228187, 0.42953020134228187, 0.43288590604026844, 0.4337248322147651, 0.4312080536912752, 0.4052013422818792, 0.3901006711409396, 0.3875838926174497, 0.38926174496644295, 0.39093959731543626, 0.3959731543624161, 0.3976510067114094, 0.39932885906040266, 0.401006711409396, 0.4035234899328859, 0.4052013422818792, 0.4077181208053691, 0.412751677852349, 0.4152684563758389, 0.42197986577181207, 0.4261744966442953, 0.4337248322147651, 0.44043624161073824, 0.4521812080536913, 0.4823825503355705, 0.5176174496644296, 0.8666107382550335], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4101.gap.json b/pfam_gap_rates/DUF4101.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..935d3a65955caa3116dfb52fd0ee1929a6c27cf8
--- /dev/null
+++ b/pfam_gap_rates/DUF4101.gap.json
@@ -0,0 +1 @@
+{"family": "DUF4101", "n_seqs": 142, "length": 126, "gap_rates": [0.11971830985915492, 0.09154929577464789, 0.028169014084507043, 0.02112676056338028, 0.02112676056338028, 0.02112676056338028, 0.02112676056338028, 0.02112676056338028, 0.02112676056338028, 0.02112676056338028, 0.02112676056338028, 0.02112676056338028, 0.02112676056338028, 0.02112676056338028, 0.02112676056338028, 0.02112676056338028, 0.02112676056338028, 0.02112676056338028, 0.02112676056338028, 0.02112676056338028, 0.02112676056338028, 0.028169014084507043, 0.028169014084507043, 0.035211267605633804, 0.02112676056338028, 0.02112676056338028, 0.02112676056338028, 0.02112676056338028, 0.02112676056338028, 0.02112676056338028, 0.02112676056338028, 0.02112676056338028, 0.02112676056338028, 0.02112676056338028, 0.02112676056338028, 0.02112676056338028, 0.02112676056338028, 0.028169014084507043, 0.028169014084507043, 0.028169014084507043, 0.8802816901408451, 0.8802816901408451, 0.8802816901408451, 0.028169014084507043, 0.028169014084507043, 0.028169014084507043, 0.028169014084507043, 0.028169014084507043, 0.028169014084507043, 0.028169014084507043, 0.028169014084507043, 0.035211267605633804, 0.028169014084507043, 0.028169014084507043, 0.028169014084507043, 0.028169014084507043, 0.028169014084507043, 0.028169014084507043, 0.31690140845070425, 0.08450704225352113, 0.07746478873239436, 0.8450704225352113, 0.035211267605633804, 0.035211267605633804, 0.035211267605633804, 0.035211267605633804, 0.035211267605633804, 0.035211267605633804, 0.035211267605633804, 0.035211267605633804, 0.035211267605633804, 0.2605633802816901, 0.2535211267605634, 0.39436619718309857, 0.8169014084507042, 0.9436619718309859, 0.8098591549295775, 0.035211267605633804, 0.035211267605633804, 0.035211267605633804, 0.035211267605633804, 0.035211267605633804, 0.035211267605633804, 0.035211267605633804, 0.028169014084507043, 0.028169014084507043, 0.028169014084507043, 0.028169014084507043, 0.028169014084507043, 0.028169014084507043, 0.028169014084507043, 0.028169014084507043, 0.028169014084507043, 0.8732394366197183, 0.035211267605633804, 0.028169014084507043, 0.02112676056338028, 0.028169014084507043, 0.02112676056338028, 0.02112676056338028, 0.31690140845070425, 0.14084507042253522, 0.028169014084507043, 0.028169014084507043, 0.04929577464788732, 0.035211267605633804, 0.035211267605633804, 0.035211267605633804, 0.035211267605633804, 0.035211267605633804, 0.035211267605633804, 0.035211267605633804, 0.035211267605633804, 0.035211267605633804, 0.035211267605633804, 0.035211267605633804, 0.035211267605633804, 0.035211267605633804, 0.035211267605633804, 0.7605633802816901, 0.035211267605633804, 0.035211267605633804, 0.035211267605633804, 0.035211267605633804, 0.04929577464788732, 0.5], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4132.gap.json b/pfam_gap_rates/DUF4132.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ce83243c9974da4336659b968bfb1f0f76eb2310
--- /dev/null
+++ b/pfam_gap_rates/DUF4132.gap.json
@@ -0,0 +1 @@
+{"family": "DUF4132", "n_seqs": 182, "length": 212, "gap_rates": [0.2802197802197802, 0.08241758241758242, 0.07142857142857142, 0.07142857142857142, 0.06043956043956044, 0.06043956043956044, 0.054945054945054944, 0.054945054945054944, 0.054945054945054944, 0.054945054945054944, 0.054945054945054944, 0.054945054945054944, 0.06043956043956044, 0.06043956043956044, 0.054945054945054944, 0.054945054945054944, 0.054945054945054944, 0.510989010989011, 0.4835164835164835, 0.5824175824175825, 0.5934065934065934, 0.5879120879120879, 0.5824175824175825, 0.1043956043956044, 0.04945054945054945, 0.04395604395604396, 0.04395604395604396, 0.04395604395604396, 0.04395604395604396, 0.038461538461538464, 0.038461538461538464, 0.03296703296703297, 0.03296703296703297, 0.03296703296703297, 0.03296703296703297, 0.03296703296703297, 0.03296703296703297, 0.03296703296703297, 0.027472527472527472, 0.027472527472527472, 0.027472527472527472, 0.027472527472527472, 0.016483516483516484, 0.016483516483516484, 0.016483516483516484, 0.016483516483516484, 0.016483516483516484, 0.005494505494505495, 0.005494505494505495, 0.005494505494505495, 0.01098901098901099, 0.9285714285714286, 0.9285714285714286, 0.9285714285714286, 0.9285714285714286, 0.9285714285714286, 0.9285714285714286, 0.9285714285714286, 0.9285714285714286, 0.9285714285714286, 0.01098901098901099, 0.01098901098901099, 0.01098901098901099, 0.01098901098901099, 0.01098901098901099, 0.01098901098901099, 0.01098901098901099, 0.01098901098901099, 0.01098901098901099, 0.016483516483516484, 0.3131868131868132, 0.02197802197802198, 0.02197802197802198, 0.02197802197802198, 0.016483516483516484, 0.016483516483516484, 0.016483516483516484, 0.016483516483516484, 0.04395604395604396, 0.04395604395604396, 0.038461538461538464, 0.038461538461538464, 0.03296703296703297, 0.03296703296703297, 0.038461538461538464, 0.038461538461538464, 0.038461538461538464, 0.02197802197802198, 0.02197802197802198, 0.24725274725274726, 0.9340659340659341, 0.6703296703296703, 0.26373626373626374, 0.1978021978021978, 0.13736263736263737, 0.0989010989010989, 0.8791208791208791, 0.9175824175824175, 0.9340659340659341, 0.8956043956043956, 0.8351648351648352, 0.8021978021978022, 0.9175824175824175, 0.945054945054945, 0.9120879120879121, 0.3131868131868132, 0.25824175824175827, 0.1978021978021978, 0.12637362637362637, 0.10989010989010989, 0.14835164835164835, 0.43956043956043955, 0.2857142857142857, 0.12637362637362637, 0.08241758241758242, 0.06593406593406594, 0.04945054945054945, 0.9395604395604396, 0.9010989010989011, 0.04395604395604396, 0.038461538461538464, 0.038461538461538464, 0.03296703296703297, 0.03296703296703297, 0.027472527472527472, 0.03296703296703297, 0.027472527472527472, 0.027472527472527472, 0.016483516483516484, 0.02197802197802198, 0.027472527472527472, 0.02197802197802198, 0.02197802197802198, 0.15384615384615385, 0.9340659340659341, 0.9285714285714286, 0.027472527472527472, 0.016483516483516484, 0.016483516483516484, 0.016483516483516484, 0.016483516483516484, 0.016483516483516484, 0.016483516483516484, 0.016483516483516484, 0.016483516483516484, 0.016483516483516484, 0.7417582417582418, 0.15384615384615385, 0.25824175824175827, 0.027472527472527472, 0.027472527472527472, 0.02197802197802198, 0.016483516483516484, 0.016483516483516484, 0.016483516483516484, 0.016483516483516484, 0.016483516483516484, 0.016483516483516484, 0.016483516483516484, 0.016483516483516484, 0.016483516483516484, 0.016483516483516484, 0.016483516483516484, 0.016483516483516484, 0.02197802197802198, 0.02197802197802198, 0.02197802197802198, 0.02197802197802198, 0.02197802197802198, 0.02197802197802198, 0.02197802197802198, 0.027472527472527472, 0.07142857142857142, 0.06593406593406594, 0.04395604395604396, 0.04945054945054945, 0.04945054945054945, 0.09340659340659341, 0.08791208791208792, 0.07692307692307693, 0.08241758241758242, 0.07142857142857142, 0.07692307692307693, 0.08241758241758242, 0.08791208791208792, 0.08791208791208792, 0.6813186813186813, 0.11538461538461539, 0.0989010989010989, 0.0989010989010989, 0.0989010989010989, 0.0989010989010989, 0.0989010989010989, 0.9010989010989011, 0.0989010989010989, 0.1043956043956044, 0.1043956043956044, 0.1043956043956044, 0.10989010989010989, 0.11538461538461539, 0.12087912087912088, 0.13186813186813187, 0.13186813186813187, 0.12637362637362637, 0.27472527472527475, 0.13736263736263737, 0.14285714285714285, 0.15384615384615385, 0.17032967032967034, 0.18681318681318682, 0.1813186813186813, 0.2032967032967033], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4159.gap.json b/pfam_gap_rates/DUF4159.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e23b8bae1dcc82537e1f72abfc116d417f1cfd2d
--- /dev/null
+++ b/pfam_gap_rates/DUF4159.gap.json
@@ -0,0 +1 @@
+{"family": "DUF4159", "n_seqs": 359, "length": 239, "gap_rates": [0.6044568245125348, 0.2200557103064067, 0.19220055710306408, 0.17270194986072424, 0.16434540389972144, 0.15041782729805014, 0.13370473537604458, 0.11142061281337047, 0.947075208913649, 0.947075208913649, 0.6963788300835655, 0.15877437325905291, 0.08356545961002786, 0.0807799442896936, 0.07520891364902507, 0.07242339832869081, 0.07799442896935933, 0.06406685236768803, 0.5069637883008357, 0.055710306406685235, 0.052924791086350974, 0.052924791086350974, 0.04456824512534819, 0.04178272980501393, 0.03064066852367688, 0.03064066852367688, 0.03064066852367688, 0.027855153203342618, 0.027855153203342618, 0.027855153203342618, 0.027855153203342618, 0.027855153203342618, 0.027855153203342618, 0.027855153203342618, 0.027855153203342618, 0.027855153203342618, 0.027855153203342618, 0.38997214484679665, 0.025069637883008356, 0.025069637883008356, 0.027855153203342618, 0.025069637883008356, 0.022284122562674095, 0.022284122562674095, 0.022284122562674095, 0.019498607242339833, 0.022284122562674095, 0.022284122562674095, 0.019498607242339833, 0.025069637883008356, 0.019498607242339833, 0.016713091922005572, 0.013927576601671309, 0.011142061281337047, 0.008356545961002786, 0.008356545961002786, 0.008356545961002786, 0.008356545961002786, 0.008356545961002786, 0.008356545961002786, 0.008356545961002786, 0.008356545961002786, 0.008356545961002786, 0.011142061281337047, 0.008356545961002786, 0.008356545961002786, 0.008356545961002786, 0.008356545961002786, 0.008356545961002786, 0.008356545961002786, 0.649025069637883, 0.008356545961002786, 0.008356545961002786, 0.008356545961002786, 0.008356545961002786, 0.008356545961002786, 0.008356545961002786, 0.008356545961002786, 0.008356545961002786, 0.008356545961002786, 0.008356545961002786, 0.008356545961002786, 0.008356545961002786, 0.008356545961002786, 0.008356545961002786, 0.005571030640668524, 0.005571030640668524, 0.005571030640668524, 0.005571030640668524, 0.005571030640668524, 0.005571030640668524, 0.3426183844011142, 0.4958217270194986, 0.6434540389972145, 0.6740947075208914, 0.8161559888579387, 0.9275766016713092, 0.8690807799442897, 0.6963788300835655, 0.6545961002785515, 0.6406685236768802, 0.4763231197771588, 0.019498607242339833, 0.013927576601671309, 0.005571030640668524, 0.005571030640668524, 0.005571030640668524, 0.005571030640668524, 0.008356545961002786, 0.2590529247910863, 0.2562674094707521, 0.011142061281337047, 0.011142061281337047, 0.008356545961002786, 0.008356545961002786, 0.008356545961002786, 0.008356545961002786, 0.008356545961002786, 0.008356545961002786, 0.6295264623955432, 0.008356545961002786, 0.016713091922005572, 0.38997214484679665, 0.3816155988857939, 0.005571030640668524, 0.005571030640668524, 0.005571030640668524, 0.005571030640668524, 0.005571030640668524, 0.002785515320334262, 0.005571030640668524, 0.005571030640668524, 0.005571030640668524, 0.005571030640668524, 0.005571030640668524, 0.005571030640668524, 0.005571030640668524, 0.005571030640668524, 0.005571030640668524, 0.005571030640668524, 0.005571030640668524, 0.005571030640668524, 0.005571030640668524, 0.5877437325905293, 0.5097493036211699, 0.924791086350975, 0.9025069637883009, 0.5069637883008357, 0.467966573816156, 0.4735376044568245, 0.596100278551532, 0.8523676880222841, 0.5515320334261838, 0.04456824512534819, 0.3426183844011142, 0.34540389972144847, 0.33147632311977715, 0.3286908077994429, 0.4735376044568245, 0.48467966573816157, 0.5013927576601671, 0.5097493036211699, 0.5069637883008357, 0.4818941504178273, 0.5905292479108635, 0.7047353760445683, 0.8133704735376045, 0.7353760445682451, 0.6629526462395543, 0.5543175487465181, 0.0947075208913649, 0.14763231197771587, 0.1392757660167131, 0.09749303621169916, 0.0947075208913649, 0.10027855153203342, 0.13370473537604458, 0.11420612813370473, 0.10027855153203342, 0.06963788300835655, 0.0584958217270195, 0.05013927576601671, 0.04735376044568245, 0.11420612813370473, 0.45403899721448465, 0.019498607242339833, 0.013927576601671309, 0.013927576601671309, 0.013927576601671309, 0.013927576601671309, 0.013927576601671309, 0.013927576601671309, 0.016713091922005572, 0.27298050139275765, 0.022284122562674095, 0.013927576601671309, 0.013927576601671309, 0.013927576601671309, 0.013927576601671309, 0.013927576601671309, 0.013927576601671309, 0.013927576601671309, 0.013927576601671309, 0.013927576601671309, 0.013927576601671309, 0.013927576601671309, 0.5905292479108635, 0.6100278551532033, 0.5988857938718662, 0.5738161559888579, 0.2116991643454039, 0.20334261838440112, 0.5041782729805014, 0.06406685236768803, 0.03899721448467967, 0.022284122562674095, 0.584958217270195, 0.8579387186629527, 0.8467966573816156, 0.5376044568245125, 0.025069637883008356, 0.016713091922005572, 0.013927576601671309, 0.013927576601671309, 0.013927576601671309, 0.013927576601671309, 0.013927576601671309, 0.016713091922005572, 0.013927576601671309, 0.013927576601671309, 0.013927576601671309, 0.013927576601671309, 0.013927576601671309, 0.013927576601671309, 0.013927576601671309, 0.016713091922005572, 0.016713091922005572, 0.03064066852367688, 0.1615598885793872], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4160.gap.json b/pfam_gap_rates/DUF4160.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..af827fc5e47ef1f5bd7f599a76d51eaec847251f
--- /dev/null
+++ b/pfam_gap_rates/DUF4160.gap.json
@@ -0,0 +1 @@
+{"family": "DUF4160", "n_seqs": 405, "length": 75, "gap_rates": [0.2938271604938272, 0.17037037037037037, 0.1382716049382716, 0.11851851851851852, 0.11358024691358025, 0.08641975308641975, 0.08148148148148149, 0.2518518518518518, 0.08148148148148149, 0.22469135802469137, 0.7506172839506173, 0.6222222222222222, 0.28888888888888886, 0.05432098765432099, 0.04938271604938271, 0.044444444444444446, 0.03209876543209877, 0.02962962962962963, 0.02962962962962963, 0.01728395061728395, 0.01728395061728395, 0.8098765432098766, 0.012345679012345678, 0.014814814814814815, 0.9135802469135802, 0.908641975308642, 0.009876543209876543, 0.009876543209876543, 0.08148148148148149, 0.009876543209876543, 0.009876543209876543, 0.007407407407407408, 0.007407407407407408, 0.012345679012345678, 0.012345679012345678, 0.8246913580246914, 0.8716049382716049, 0.9481481481481482, 0.8345679012345679, 0.7209876543209877, 0.07901234567901234, 0.08395061728395062, 0.03209876543209877, 0.027160493827160494, 0.024691358024691357, 0.027160493827160494, 0.02962962962962963, 0.024691358024691357, 0.6148148148148148, 0.0345679012345679, 0.027160493827160494, 0.027160493827160494, 0.02962962962962963, 0.027160493827160494, 0.02962962962962963, 0.02962962962962963, 0.02962962962962963, 0.03209876543209877, 0.03209876543209877, 0.0345679012345679, 0.03950617283950617, 0.04938271604938271, 0.04938271604938271, 0.05185185185185185, 0.05185185185185185, 0.056790123456790124, 0.0691358024691358, 0.0691358024691358, 0.0691358024691358, 0.07160493827160494, 0.08148148148148149, 0.09135802469135802, 0.10617283950617284, 0.1111111111111111, 0.4641975308641975], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4170.gap.json b/pfam_gap_rates/DUF4170.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..24405ae682dbdb69aecb4491d9d072a83f1db462
--- /dev/null
+++ b/pfam_gap_rates/DUF4170.gap.json
@@ -0,0 +1 @@
+{"family": "DUF4170", "n_seqs": 150, "length": 68, "gap_rates": [0.5866666666666667, 0.25333333333333335, 0.12666666666666668, 0.12, 0.03333333333333333, 0.02, 0.013333333333333334, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.006666666666666667, 0.0, 0.0, 0.02, 0.0, 0.006666666666666667, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.04, 0.013333333333333334, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.03333333333333333, 0.06, 0.1, 0.12, 0.12, 0.12666666666666668, 0.13333333333333333, 0.14666666666666667, 0.37333333333333335], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4174.gap.json b/pfam_gap_rates/DUF4174.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..43a056e0d005fb4ee35bb64ddacb195d7a3c74fd
--- /dev/null
+++ b/pfam_gap_rates/DUF4174.gap.json
@@ -0,0 +1 @@
+{"family": "DUF4174", "n_seqs": 209, "length": 145, "gap_rates": [0.7799043062200957, 0.14354066985645933, 0.11483253588516747, 0.09090909090909091, 0.08133971291866028, 0.06698564593301436, 0.05741626794258373, 0.05263157894736842, 0.03827751196172249, 0.03349282296650718, 0.03349282296650718, 0.028708133971291867, 0.028708133971291867, 0.028708133971291867, 0.028708133971291867, 0.03349282296650718, 0.05741626794258373, 0.04784688995215311, 0.0430622009569378, 0.028708133971291867, 0.028708133971291867, 0.03349282296650718, 0.03827751196172249, 0.04784688995215311, 0.0430622009569378, 0.023923444976076555, 0.023923444976076555, 0.019138755980861243, 0.023923444976076555, 0.03349282296650718, 0.03349282296650718, 0.9234449760765551, 0.07177033492822966, 0.9425837320574163, 0.023923444976076555, 0.023923444976076555, 0.014354066985645933, 0.014354066985645933, 0.014354066985645933, 0.009569377990430622, 0.009569377990430622, 0.009569377990430622, 0.014354066985645933, 0.014354066985645933, 0.014354066985645933, 0.014354066985645933, 0.014354066985645933, 0.009569377990430622, 0.014354066985645933, 0.06220095693779904, 0.0430622009569378, 0.20095693779904306, 0.20574162679425836, 0.22488038277511962, 0.24401913875598086, 0.2631578947368421, 0.2727272727272727, 0.291866028708134, 0.291866028708134, 0.4688995215311005, 0.4880382775119617, 0.69377990430622, 0.7033492822966507, 0.7033492822966507, 0.7799043062200957, 0.8851674641148325, 0.8851674641148325, 0.7894736842105263, 0.7751196172248804, 0.7033492822966507, 0.6985645933014354, 0.6889952153110048, 0.4784688995215311, 0.4019138755980861, 0.291866028708134, 0.36363636363636365, 0.2679425837320574, 0.8851674641148325, 0.8851674641148325, 0.8899521531100478, 0.8899521531100478, 0.8995215311004785, 0.8947368421052632, 0.8899521531100478, 0.8851674641148325, 0.8851674641148325, 0.8851674641148325, 0.04784688995215311, 0.03827751196172249, 0.028708133971291867, 0.009569377990430622, 0.009569377990430622, 0.009569377990430622, 0.014354066985645933, 0.014354066985645933, 0.014354066985645933, 0.023923444976076555, 0.028708133971291867, 0.023923444976076555, 0.023923444976076555, 0.028708133971291867, 0.22488038277511962, 0.21052631578947367, 0.023923444976076555, 0.019138755980861243, 0.9330143540669856, 0.009569377990430622, 0.009569377990430622, 0.009569377990430622, 0.009569377990430622, 0.009569377990430622, 0.009569377990430622, 0.009569377990430622, 0.009569377990430622, 0.009569377990430622, 0.009569377990430622, 0.009569377990430622, 0.009569377990430622, 0.014354066985645933, 0.014354066985645933, 0.014354066985645933, 0.028708133971291867, 0.014354066985645933, 0.019138755980861243, 0.014354066985645933, 0.014354066985645933, 0.8851674641148325, 0.014354066985645933, 0.014354066985645933, 0.019138755980861243, 0.019138755980861243, 0.019138755980861243, 0.019138755980861243, 0.019138755980861243, 0.019138755980861243, 0.019138755980861243, 0.019138755980861243, 0.019138755980861243, 0.019138755980861243, 0.019138755980861243, 0.019138755980861243, 0.023923444976076555, 0.023923444976076555, 0.0430622009569378, 0.12440191387559808], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4178.gap.json b/pfam_gap_rates/DUF4178.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e92e6bb5af96b893c88d088919ab92585466d990
--- /dev/null
+++ b/pfam_gap_rates/DUF4178.gap.json
@@ -0,0 +1 @@
+{"family": "DUF4178", "n_seqs": 258, "length": 178, "gap_rates": [0.5310077519379846, 0.15503875968992248, 0.13565891472868216, 0.1124031007751938, 0.10852713178294573, 0.10852713178294573, 0.10077519379844961, 0.09302325581395349, 0.06589147286821706, 0.06201550387596899, 0.050387596899224806, 0.027131782945736434, 0.027131782945736434, 0.023255813953488372, 0.023255813953488372, 0.023255813953488372, 0.023255813953488372, 0.023255813953488372, 0.023255813953488372, 0.023255813953488372, 0.023255813953488372, 0.023255813953488372, 0.023255813953488372, 0.7170542635658915, 0.7829457364341085, 0.8914728682170543, 0.9418604651162791, 0.9069767441860465, 0.8837209302325582, 0.7558139534883721, 0.6395348837209303, 0.015503875968992248, 0.10077519379844961, 0.09689922480620156, 0.08914728682170543, 0.08914728682170543, 0.01937984496124031, 0.015503875968992248, 0.011627906976744186, 0.007751937984496124, 0.007751937984496124, 0.007751937984496124, 0.686046511627907, 0.5930232558139535, 0.007751937984496124, 0.011627906976744186, 0.007751937984496124, 0.007751937984496124, 0.01937984496124031, 0.6201550387596899, 0.20930232558139536, 0.011627906976744186, 0.003875968992248062, 0.003875968992248062, 0.003875968992248062, 0.003875968992248062, 0.007751937984496124, 0.5581395348837209, 0.8875968992248062, 0.5891472868217055, 0.5193798449612403, 0.32945736434108525, 0.32558139534883723, 0.09689922480620156, 0.07751937984496124, 0.07364341085271318, 0.07364341085271318, 0.07751937984496124, 0.09302325581395349, 0.09302325581395349, 0.07364341085271318, 0.12015503875968993, 0.14728682170542637, 0.16666666666666666, 0.17054263565891473, 0.17054263565891473, 0.18992248062015504, 0.1124031007751938, 0.3682170542635659, 0.3062015503875969, 0.29069767441860467, 0.3023255813953488, 0.7945736434108527, 0.8565891472868217, 0.8953488372093024, 0.9496124031007752, 0.9069767441860465, 0.8798449612403101, 0.8217054263565892, 0.751937984496124, 0.6589147286821705, 0.6744186046511628, 0.6589147286821705, 0.6472868217054264, 0.5465116279069767, 0.32170542635658916, 0.7325581395348837, 0.8410852713178295, 0.937984496124031, 0.813953488372093, 0.6201550387596899, 0.023255813953488372, 0.011627906976744186, 0.007751937984496124, 0.007751937984496124, 0.011627906976744186, 0.007751937984496124, 0.011627906976744186, 0.9496124031007752, 0.015503875968992248, 0.011627906976744186, 0.011627906976744186, 0.007751937984496124, 0.007751937984496124, 0.007751937984496124, 0.007751937984496124, 0.023255813953488372, 0.01937984496124031, 0.015503875968992248, 0.015503875968992248, 0.4186046511627907, 0.4263565891472868, 0.41472868217054265, 0.027131782945736434, 0.031007751937984496, 0.015503875968992248, 0.011627906976744186, 0.011627906976744186, 0.01937984496124031, 0.10077519379844961, 0.10077519379844961, 0.06976744186046512, 0.05813953488372093, 0.06589147286821706, 0.04263565891472868, 0.050387596899224806, 0.027131782945736434, 0.01937984496124031, 0.015503875968992248, 0.015503875968992248, 0.015503875968992248, 0.015503875968992248, 0.015503875968992248, 0.015503875968992248, 0.015503875968992248, 0.9457364341085271, 0.7364341085271318, 0.050387596899224806, 0.027131782945736434, 0.20155038759689922, 0.05813953488372093, 0.09302325581395349, 0.9263565891472868, 0.023255813953488372, 0.023255813953488372, 0.023255813953488372, 0.027131782945736434, 0.9496124031007752, 0.027131782945736434, 0.03488372093023256, 0.046511627906976744, 0.8875968992248062, 0.9418604651162791, 0.7751937984496124, 0.03488372093023256, 0.03488372093023256, 0.8488372093023255, 0.03875968992248062, 0.03875968992248062, 0.04263565891472868, 0.046511627906976744, 0.05813953488372093, 0.06976744186046512, 0.08527131782945736, 0.10077519379844961, 0.12015503875968993, 0.29457364341085274, 0.7674418604651163], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4180.gap.json b/pfam_gap_rates/DUF4180.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a1d2a89f66c5e6d22be3441b71f8c14336c45bd4
--- /dev/null
+++ b/pfam_gap_rates/DUF4180.gap.json
@@ -0,0 +1 @@
+{"family": "DUF4180", "n_seqs": 160, "length": 112, "gap_rates": [0.50625, 0.25, 0.20625, 0.16875, 0.11875, 0.10625, 0.0875, 0.0875, 0.09375, 0.08125, 0.075, 0.05625, 0.05, 0.05, 0.025, 0.0375, 0.01875, 0.025, 0.0125, 0.0125, 0.0125, 0.00625, 0.00625, 0.5625, 0.0, 0.0, 0.00625, 0.00625, 0.00625, 0.0, 0.0, 0.05625, 0.01875, 0.00625, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0125, 0.0125, 0.0125, 0.0125, 0.0125, 0.0125, 0.0125, 0.0125, 0.0125, 0.0125, 0.0125, 0.0125, 0.0125, 0.0125, 0.0125, 0.0125, 0.0125, 0.0125, 0.0125, 0.0125, 0.0125, 0.0125, 0.0125, 0.0125, 0.1375, 0.13125, 0.01875, 0.01875, 0.01875, 0.01875, 0.65625, 0.6375, 0.03125, 0.01875, 0.01875, 0.01875, 0.01875, 0.01875, 0.01875, 0.01875, 0.01875, 0.01875, 0.025, 0.025, 0.025, 0.025, 0.025, 0.025, 0.025, 0.03125, 0.03125, 0.03125, 0.03125, 0.0375, 0.0375, 0.0375, 0.0375, 0.0375, 0.05, 0.05625, 0.06875, 0.15625, 0.2375], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4208.gap.json b/pfam_gap_rates/DUF4208.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..863e107e7343e6f5c9c2a08e1b000c4cafb87228
--- /dev/null
+++ b/pfam_gap_rates/DUF4208.gap.json
@@ -0,0 +1 @@
+{"family": "DUF4208", "n_seqs": 295, "length": 105, "gap_rates": [0.7254237288135593, 0.4406779661016949, 0.288135593220339, 0.23389830508474577, 0.17288135593220338, 0.14915254237288136, 0.12203389830508475, 0.11864406779661017, 0.3864406779661017, 0.05423728813559322, 0.03728813559322034, 0.03389830508474576, 0.03389830508474576, 0.03389830508474576, 0.02711864406779661, 0.02711864406779661, 0.020338983050847456, 0.020338983050847456, 0.01694915254237288, 0.013559322033898305, 0.010169491525423728, 0.013559322033898305, 0.013559322033898305, 0.010169491525423728, 0.010169491525423728, 0.02711864406779661, 0.010169491525423728, 0.09491525423728814, 0.0711864406779661, 0.0711864406779661, 0.6305084745762712, 0.5966101694915255, 0.847457627118644, 0.07457627118644068, 0.04745762711864407, 0.023728813559322035, 0.020338983050847456, 0.01694915254237288, 0.01694915254237288, 0.01694915254237288, 0.0, 0.0, 0.0, 0.0, 0.0, 0.01694915254237288, 0.0, 0.0, 0.0, 0.0, 0.003389830508474576, 0.003389830508474576, 0.003389830508474576, 0.003389830508474576, 0.003389830508474576, 0.003389830508474576, 0.003389830508474576, 0.003389830508474576, 0.003389830508474576, 0.006779661016949152, 0.07457627118644068, 0.2440677966101695, 0.2305084745762712, 0.7457627118644068, 0.9457627118644067, 0.34576271186440677, 0.08135593220338982, 0.0576271186440678, 0.030508474576271188, 0.006779661016949152, 0.003389830508474576, 0.003389830508474576, 0.003389830508474576, 0.013559322033898305, 0.013559322033898305, 0.020338983050847456, 0.020338983050847456, 0.01694915254237288, 0.020338983050847456, 0.020338983050847456, 0.020338983050847456, 0.9322033898305084, 0.020338983050847456, 0.020338983050847456, 0.023728813559322035, 0.02711864406779661, 0.8915254237288136, 0.9322033898305084, 0.9050847457627119, 0.8745762711864407, 0.5491525423728814, 0.5559322033898305, 0.8, 0.061016949152542375, 0.061016949152542375, 0.06440677966101695, 0.06440677966101695, 0.06779661016949153, 0.06779661016949153, 0.0711864406779661, 0.07796610169491526, 0.0847457627118644, 0.0847457627118644, 0.11186440677966102, 0.4406779661016949], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4240.gap.json b/pfam_gap_rates/DUF4240.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..1b8cca7cf1d003394363eead956cd3d48410047e
--- /dev/null
+++ b/pfam_gap_rates/DUF4240.gap.json
@@ -0,0 +1 @@
+{"family": "DUF4240", "n_seqs": 140, "length": 144, "gap_rates": [0.35714285714285715, 0.24285714285714285, 0.20714285714285716, 0.15714285714285714, 0.1357142857142857, 0.12142857142857143, 0.12142857142857143, 0.12142857142857143, 0.11428571428571428, 0.10714285714285714, 0.10714285714285714, 0.10714285714285714, 0.10714285714285714, 0.10714285714285714, 0.10714285714285714, 0.1, 0.1, 0.8642857142857143, 0.9142857142857143, 0.95, 0.9142857142857143, 0.8857142857142857, 0.8571428571428571, 0.34285714285714286, 0.2357142857142857, 0.17142857142857143, 0.17142857142857143, 0.14285714285714285, 0.1, 0.07857142857142857, 0.07142857142857142, 0.05714285714285714, 0.04285714285714286, 0.03571428571428571, 0.02857142857142857, 0.02857142857142857, 0.02857142857142857, 0.02857142857142857, 0.02857142857142857, 0.02142857142857143, 0.014285714285714285, 0.014285714285714285, 0.014285714285714285, 0.014285714285714285, 0.014285714285714285, 0.014285714285714285, 0.014285714285714285, 0.014285714285714285, 0.014285714285714285, 0.014285714285714285, 0.014285714285714285, 0.014285714285714285, 0.014285714285714285, 0.014285714285714285, 0.007142857142857143, 0.007142857142857143, 0.007142857142857143, 0.007142857142857143, 0.007142857142857143, 0.007142857142857143, 0.007142857142857143, 0.007142857142857143, 0.007142857142857143, 0.007142857142857143, 0.0, 0.007142857142857143, 0.007142857142857143, 0.007142857142857143, 0.0, 0.8071428571428572, 0.05, 0.07142857142857142, 0.07142857142857142, 0.07857142857142857, 0.07857142857142857, 0.9142857142857143, 0.9214285714285714, 0.8714285714285714, 0.03571428571428571, 0.007142857142857143, 0.0, 0.0, 0.007142857142857143, 0.007142857142857143, 0.007142857142857143, 0.014285714285714285, 0.014285714285714285, 0.007142857142857143, 0.007142857142857143, 0.007142857142857143, 0.014285714285714285, 0.014285714285714285, 0.014285714285714285, 0.014285714285714285, 0.014285714285714285, 0.014285714285714285, 0.014285714285714285, 0.014285714285714285, 0.014285714285714285, 0.014285714285714285, 0.014285714285714285, 0.014285714285714285, 0.014285714285714285, 0.014285714285714285, 0.014285714285714285, 0.014285714285714285, 0.014285714285714285, 0.014285714285714285, 0.02142857142857143, 0.03571428571428571, 0.05, 0.06428571428571428, 0.16428571428571428, 0.16428571428571428, 0.16428571428571428, 0.17857142857142858, 0.19285714285714287, 0.7214285714285714, 0.8714285714285714, 0.9428571428571428, 0.9142857142857143, 0.7928571428571428, 0.6857142857142857, 0.5142857142857142, 0.4357142857142857, 0.4, 0.3357142857142857, 0.1, 0.10714285714285714, 0.1, 0.1, 0.1, 0.1, 0.10714285714285714, 0.10714285714285714, 0.11428571428571428, 0.11428571428571428, 0.12142857142857143, 0.12142857142857143, 0.12142857142857143, 0.17142857142857143, 0.2, 0.3357142857142857, 0.6214285714285714], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4270.gap.json b/pfam_gap_rates/DUF4270.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..fade3fce736f492af6aae2b673f06a2436c7976c
--- /dev/null
+++ b/pfam_gap_rates/DUF4270.gap.json
@@ -0,0 +1 @@
+{"family": "DUF4270", "n_seqs": 154, "length": 670, "gap_rates": [0.43506493506493504, 0.33766233766233766, 0.33116883116883117, 0.3051948051948052, 0.2857142857142857, 0.2922077922077922, 0.2792207792207792, 0.2662337662337662, 0.2597402597402597, 0.2662337662337662, 0.6883116883116883, 0.3116883116883117, 0.4090909090909091, 0.38961038961038963, 0.2922077922077922, 0.18831168831168832, 0.17532467532467533, 0.15584415584415584, 0.15584415584415584, 0.7207792207792207, 0.18181818181818182, 0.15584415584415584, 0.11688311688311688, 0.11038961038961038, 0.11038961038961038, 0.1038961038961039, 0.1038961038961039, 0.1038961038961039, 0.07792207792207792, 0.08441558441558442, 0.07142857142857142, 0.05844155844155844, 0.05844155844155844, 0.05844155844155844, 0.045454545454545456, 0.03896103896103896, 0.948051948051948, 0.9415584415584416, 0.37662337662337664, 0.032467532467532464, 0.025974025974025976, 0.01948051948051948, 0.01948051948051948, 0.01948051948051948, 0.01948051948051948, 0.01948051948051948, 0.01948051948051948, 0.01948051948051948, 0.01948051948051948, 0.01948051948051948, 0.01948051948051948, 0.01948051948051948, 0.012987012987012988, 0.012987012987012988, 0.012987012987012988, 0.012987012987012988, 0.8636363636363636, 0.01948051948051948, 0.01948051948051948, 0.012987012987012988, 0.012987012987012988, 0.012987012987012988, 0.012987012987012988, 0.012987012987012988, 0.012987012987012988, 0.012987012987012988, 0.012987012987012988, 0.012987012987012988, 0.461038961038961, 0.36363636363636365, 0.032467532467532464, 0.01948051948051948, 0.012987012987012988, 0.06493506493506493, 0.045454545454545456, 0.08441558441558442, 0.13636363636363635, 0.11038961038961038, 0.6753246753246753, 0.7012987012987013, 0.7272727272727273, 0.8246753246753247, 0.8571428571428571, 0.8831168831168831, 0.922077922077922, 0.9415584415584416, 0.935064935064935, 0.8961038961038961, 0.8831168831168831, 0.8441558441558441, 0.7467532467532467, 0.7142857142857143, 0.6883116883116883, 0.6623376623376623, 0.03896103896103896, 0.11038961038961038, 0.032467532467532464, 0.012987012987012988, 0.012987012987012988, 0.012987012987012988, 0.012987012987012988, 0.012987012987012988, 0.012987012987012988, 0.012987012987012988, 0.012987012987012988, 0.9415584415584416, 0.012987012987012988, 0.012987012987012988, 0.012987012987012988, 0.025974025974025976, 0.01948051948051948, 0.525974025974026, 0.7532467532467533, 0.7857142857142857, 0.8051948051948052, 0.8116883116883117, 0.8116883116883117, 0.8181818181818182, 0.8181818181818182, 0.8571428571428571, 0.9090909090909091, 0.9155844155844156, 0.9285714285714286, 0.9415584415584416, 0.9415584415584416, 0.9415584415584416, 0.948051948051948, 0.9415584415584416, 0.9415584415584416, 0.9415584415584416, 0.9285714285714286, 0.922077922077922, 0.9090909090909091, 0.8896103896103896, 0.8181818181818182, 0.8181818181818182, 0.8116883116883117, 0.8116883116883117, 0.8116883116883117, 0.7857142857142857, 0.7727272727272727, 0.6948051948051948, 0.03896103896103896, 0.012987012987012988, 0.012987012987012988, 0.06493506493506493, 0.07142857142857142, 0.8961038961038961, 0.012987012987012988, 0.012987012987012988, 0.012987012987012988, 0.012987012987012988, 0.012987012987012988, 0.012987012987012988, 0.012987012987012988, 0.012987012987012988, 0.012987012987012988, 0.012987012987012988, 0.7857142857142857, 0.7857142857142857, 0.7792207792207793, 0.05844155844155844, 0.09090909090909091, 0.12337662337662338, 0.4090909090909091, 0.6298701298701299, 0.4935064935064935, 0.935064935064935, 0.9090909090909091, 0.6688311688311688, 0.5909090909090909, 0.6298701298701299, 0.15584415584415584, 0.12337662337662338, 0.11038961038961038, 0.06493506493506493, 0.032467532467532464, 0.03896103896103896, 0.01948051948051948, 0.012987012987012988, 0.01948051948051948, 0.012987012987012988, 0.8441558441558441, 0.8766233766233766, 0.9025974025974026, 0.9090909090909091, 0.9155844155844156, 0.9285714285714286, 0.935064935064935, 0.948051948051948, 0.935064935064935, 0.922077922077922, 0.9155844155844156, 0.9090909090909091, 0.8961038961038961, 0.8701298701298701, 0.8376623376623377, 0.14285714285714285, 0.16233766233766234, 0.11688311688311688, 0.512987012987013, 0.5714285714285714, 0.6103896103896104, 0.6428571428571429, 0.6818181818181818, 0.7857142857142857, 0.922077922077922, 0.9285714285714286, 0.8636363636363636, 0.7077922077922078, 0.6558441558441559, 0.6428571428571429, 0.5909090909090909, 0.538961038961039, 0.4675324675324675, 0.3181818181818182, 0.2857142857142857, 0.2662337662337662, 0.2532467532467532, 0.21428571428571427, 0.16883116883116883, 0.9025974025974026, 0.9155844155844156, 0.8181818181818182, 0.23376623376623376, 0.23376623376623376, 0.21428571428571427, 0.14935064935064934, 0.15584415584415584, 0.13636363636363635, 0.7987012987012987, 0.8766233766233766, 0.935064935064935, 0.8506493506493507, 0.7012987012987013, 0.16883116883116883, 0.16233766233766234, 0.13636363636363635, 0.11688311688311688, 0.12337662337662338, 0.6298701298701299, 0.14285714285714285, 0.14285714285714285, 0.18181818181818182, 0.45454545454545453, 0.42857142857142855, 0.37662337662337664, 0.33766233766233766, 0.2987012987012987, 0.3181818181818182, 0.2987012987012987, 0.07142857142857142, 0.05194805194805195, 0.05194805194805195, 0.012987012987012988, 0.006493506493506494, 0.006493506493506494, 0.006493506493506494, 0.006493506493506494, 0.012987012987012988, 0.006493506493506494, 0.045454545454545456, 0.7922077922077922, 0.8441558441558441, 0.8896103896103896, 0.8961038961038961, 0.9090909090909091, 0.922077922077922, 0.9025974025974026, 0.8961038961038961, 0.8896103896103896, 0.8116883116883117, 0.7727272727272727, 0.01948051948051948, 0.006493506493506494, 0.006493506493506494, 0.6233766233766234, 0.025974025974025976, 0.006493506493506494, 0.012987012987012988, 0.006493506493506494, 0.006493506493506494, 0.012987012987012988, 0.01948051948051948, 0.01948051948051948, 0.2012987012987013, 0.6038961038961039, 0.525974025974026, 0.03896103896103896, 0.07792207792207792, 0.09090909090909091, 0.01948051948051948, 0.8961038961038961, 0.8311688311688312, 0.012987012987012988, 0.006493506493506494, 0.006493506493506494, 0.006493506493506494, 0.006493506493506494, 0.7272727272727273, 0.006493506493506494, 0.006493506493506494, 0.006493506493506494, 0.006493506493506494, 0.006493506493506494, 0.006493506493506494, 0.006493506493506494, 0.006493506493506494, 0.006493506493506494, 0.006493506493506494, 0.006493506493506494, 0.006493506493506494, 0.7727272727272727, 0.9155844155844156, 0.948051948051948, 0.8896103896103896, 0.6363636363636364, 0.012987012987012988, 0.012987012987012988, 0.012987012987012988, 0.012987012987012988, 0.01948051948051948, 0.006493506493506494, 0.012987012987012988, 0.006493506493506494, 0.006493506493506494, 0.006493506493506494, 0.4025974025974026, 0.37662337662337664, 0.7337662337662337, 0.922077922077922, 0.7012987012987013, 0.006493506493506494, 0.006493506493506494, 0.006493506493506494, 0.006493506493506494, 0.006493506493506494, 0.006493506493506494, 0.006493506493506494, 0.006493506493506494, 0.006493506493506494, 0.006493506493506494, 0.07792207792207792, 0.05844155844155844, 0.03896103896103896, 0.06493506493506493, 0.06493506493506493, 0.03896103896103896, 0.01948051948051948, 0.05194805194805195, 0.14285714285714285, 0.07792207792207792, 0.2077922077922078, 0.22727272727272727, 0.33116883116883117, 0.35714285714285715, 0.7987012987012987, 0.9285714285714286, 0.8506493506493507, 0.7207792207792207, 0.4935064935064935, 0.6363636363636364, 0.5909090909090909, 0.16883116883116883, 0.5, 0.7207792207792207, 0.8311688311688312, 0.8766233766233766, 0.935064935064935, 0.9415584415584416, 0.9155844155844156, 0.8571428571428571, 0.7857142857142857, 0.6038961038961039, 0.4155844155844156, 0.045454545454545456, 0.15584415584415584, 0.11688311688311688, 0.09090909090909091, 0.01948051948051948, 0.01948051948051948, 0.012987012987012988, 0.01948051948051948, 0.01948051948051948, 0.19480519480519481, 0.025974025974025976, 0.01948051948051948, 0.012987012987012988, 0.012987012987012988, 0.012987012987012988, 0.012987012987012988, 0.05844155844155844, 0.03896103896103896, 0.09740259740259741, 0.05844155844155844, 0.5064935064935064, 0.4155844155844156, 0.42207792207792205, 0.42207792207792205, 0.17532467532467533, 0.11038961038961038, 0.08441558441558442, 0.06493506493506493, 0.045454545454545456, 0.15584415584415584, 0.16883116883116883, 0.16233766233766234, 0.44155844155844154, 0.42207792207792205, 0.6948051948051948, 0.7727272727272727, 0.8961038961038961, 0.9415584415584416, 0.935064935064935, 0.7987012987012987, 0.7597402597402597, 0.6558441558441559, 0.025974025974025976, 0.025974025974025976, 0.012987012987012988, 0.012987012987012988, 0.012987012987012988, 0.012987012987012988, 0.012987012987012988, 0.01948051948051948, 0.032467532467532464, 0.012987012987012988, 0.012987012987012988, 0.012987012987012988, 0.012987012987012988, 0.012987012987012988, 0.012987012987012988, 0.012987012987012988, 0.012987012987012988, 0.3961038961038961, 0.38311688311688313, 0.24675324675324675, 0.2077922077922078, 0.8701298701298701, 0.948051948051948, 0.8961038961038961, 0.7922077922077922, 0.045454545454545456, 0.6558441558441559, 0.8051948051948052, 0.9155844155844156, 0.8701298701298701, 0.7337662337662337, 0.5064935064935064, 0.032467532467532464, 0.025974025974025976, 0.01948051948051948, 0.012987012987012988, 0.012987012987012988, 0.025974025974025976, 0.44155844155844154, 0.8571428571428571, 0.935064935064935, 0.9025974025974026, 0.8051948051948052, 0.35064935064935066, 0.012987012987012988, 0.012987012987012988, 0.012987012987012988, 0.012987012987012988, 0.012987012987012988, 0.012987012987012988, 0.012987012987012988, 0.05844155844155844, 0.05194805194805195, 0.025974025974025976, 0.025974025974025976, 0.025974025974025976, 0.025974025974025976, 0.032467532467532464, 0.025974025974025976, 0.05194805194805195, 0.03896103896103896, 0.045454545454545456, 0.06493506493506493, 0.09090909090909091, 0.07792207792207792, 0.487012987012987, 0.8376623376623377, 0.9415584415584416, 0.8896103896103896, 0.5714285714285714, 0.2792207792207792, 0.032467532467532464, 0.06493506493506493, 0.03896103896103896, 0.032467532467532464, 0.025974025974025976, 0.025974025974025976, 0.025974025974025976, 0.01948051948051948, 0.01948051948051948, 0.01948051948051948, 0.8831168831168831, 0.512987012987013, 0.512987012987013, 0.5064935064935064, 0.8961038961038961, 0.922077922077922, 0.9415584415584416, 0.9090909090909091, 0.8896103896103896, 0.05194805194805195, 0.06493506493506493, 0.9415584415584416, 0.05844155844155844, 0.05194805194805195, 0.03896103896103896, 0.032467532467532464, 0.032467532467532464, 0.025974025974025976, 0.025974025974025976, 0.025974025974025976, 0.045454545454545456, 0.07142857142857142, 0.43506493506493504, 0.37662337662337664, 0.21428571428571427, 0.14935064935064934, 0.11688311688311688, 0.1038961038961039, 0.14285714285714285, 0.12987012987012986, 0.11688311688311688, 0.8246753246753247, 0.7077922077922078, 0.42207792207792205, 0.12987012987012986, 0.11038961038961038, 0.12337662337662338, 0.12987012987012986, 0.34415584415584416, 0.487012987012987, 0.487012987012987, 0.5, 0.487012987012987, 0.5, 0.9155844155844156, 0.9415584415584416, 0.948051948051948, 0.935064935064935, 0.8961038961038961, 0.4090909090909091, 0.16883116883116883, 0.1038961038961039, 0.045454545454545456, 0.42857142857142855, 0.032467532467532464, 0.032467532467532464, 0.032467532467532464, 0.032467532467532464, 0.03896103896103896, 0.045454545454545456, 0.045454545454545456, 0.045454545454545456, 0.045454545454545456, 0.045454545454545456, 0.045454545454545456, 0.045454545454545456, 0.045454545454545456, 0.045454545454545456, 0.05194805194805195, 0.8376623376623377, 0.948051948051948, 0.8831168831168831, 0.8116883116883117, 0.4675324675324675, 0.6558441558441559, 0.6558441558441559, 0.6363636363636364, 0.487012987012987, 0.6298701298701299, 0.6428571428571429, 0.6688311688311688, 0.7077922077922078, 0.7207792207792207, 0.7272727272727273, 0.7532467532467533, 0.7792207792207793, 0.8636363636363636, 0.9025974025974026, 0.9415584415584416, 0.9090909090909091, 0.8766233766233766, 0.8376623376623377, 0.7532467532467533, 0.7272727272727273, 0.7272727272727273, 0.7142857142857143, 0.6753246753246753, 0.6428571428571429, 0.6363636363636364, 0.5909090909090909, 0.34415584415584416, 0.2597402597402597, 0.15584415584415584, 0.11688311688311688, 0.12337662337662338, 0.12337662337662338, 0.42207792207792205, 0.11038961038961038, 0.11038961038961038, 0.09740259740259741, 0.09090909090909091, 0.09090909090909091, 0.09090909090909091, 0.09090909090909091, 0.09740259740259741, 0.09740259740259741, 0.09090909090909091, 0.8961038961038961, 0.09090909090909091, 0.5714285714285714, 0.6428571428571429, 0.6883116883116883, 0.7922077922077922, 0.8571428571428571, 0.8896103896103896, 0.8311688311688312, 0.7272727272727273, 0.6753246753246753, 0.5909090909090909, 0.5454545454545454, 0.11038961038961038, 0.16883116883116883, 0.16233766233766234, 0.16233766233766234, 0.16883116883116883, 0.16883116883116883, 0.16883116883116883, 0.17532467532467533, 0.35064935064935066, 0.35064935064935066, 0.35064935064935066, 0.4025974025974026, 0.2727272727272727, 0.38311688311688313, 0.4090909090909091, 0.6233766233766234, 0.7402597402597403, 0.8441558441558441, 0.9090909090909091, 0.9285714285714286, 0.948051948051948, 0.948051948051948, 0.9155844155844156, 0.8896103896103896, 0.7922077922077922, 0.7207792207792207, 0.5324675324675324, 0.4805194805194805, 0.35064935064935066, 0.3051948051948052, 0.2727272727272727, 0.22077922077922077, 0.18831168831168832, 0.18831168831168832, 0.18831168831168832, 0.18831168831168832, 0.18831168831168832, 0.19480519480519481, 0.2077922077922078, 0.21428571428571427, 0.2792207792207792, 0.564935064935065], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4317.gap.json b/pfam_gap_rates/DUF4317.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..abac2d0e9ed709ac9aa2d10a1d3f9455fdb70fe8
--- /dev/null
+++ b/pfam_gap_rates/DUF4317.gap.json
@@ -0,0 +1 @@
+{"family": "DUF4317", "n_seqs": 247, "length": 461, "gap_rates": [0.2793522267206478, 0.16194331983805668, 0.13765182186234817, 0.13765182186234817, 0.13765182186234817, 0.13765182186234817, 0.12550607287449392, 0.12550607287449392, 0.12550607287449392, 0.12550607287449392, 0.12550607287449392, 0.12550607287449392, 0.12550607287449392, 0.12550607287449392, 0.12550607287449392, 0.12550607287449392, 0.12550607287449392, 0.12550607287449392, 0.7611336032388664, 0.7611336032388664, 0.12550607287449392, 0.12550607287449392, 0.12550607287449392, 0.12550607287449392, 0.1214574898785425, 0.1214574898785425, 0.1214574898785425, 0.1214574898785425, 0.1214574898785425, 0.1214574898785425, 0.11740890688259109, 0.1214574898785425, 0.8016194331983806, 0.11740890688259109, 0.11740890688259109, 0.1214574898785425, 0.11740890688259109, 0.11740890688259109, 0.11740890688259109, 0.11740890688259109, 0.11740890688259109, 0.1214574898785425, 0.1214574898785425, 0.1214574898785425, 0.12550607287449392, 0.12550607287449392, 0.12550607287449392, 0.12550607287449392, 0.12550607287449392, 0.12550607287449392, 0.12550607287449392, 0.12550607287449392, 0.12550607287449392, 0.12550607287449392, 0.12550607287449392, 0.12550607287449392, 0.12550607287449392, 0.12955465587044535, 0.12955465587044535, 0.12955465587044535, 0.12955465587044535, 0.12955465587044535, 0.12955465587044535, 0.13360323886639677, 0.13360323886639677, 0.13360323886639677, 0.13360323886639677, 0.13765182186234817, 0.13360323886639677, 0.13360323886639677, 0.13360323886639677, 0.12955465587044535, 0.12955465587044535, 0.12955465587044535, 0.12955465587044535, 0.12955465587044535, 0.12955465587044535, 0.12955465587044535, 0.12955465587044535, 0.145748987854251, 0.1417004048582996, 0.13765182186234817, 0.30364372469635625, 0.2793522267206478, 0.1417004048582996, 0.13765182186234817, 0.13360323886639677, 0.13360323886639677, 0.13360323886639677, 0.13360323886639677, 0.13360323886639677, 0.13360323886639677, 0.13360323886639677, 0.13360323886639677, 0.13360323886639677, 0.13360323886639677, 0.13360323886639677, 0.13360323886639677, 0.145748987854251, 0.145748987854251, 0.14979757085020243, 0.8582995951417004, 0.8259109311740891, 0.13765182186234817, 0.13765182186234817, 0.13765182186234817, 0.13360323886639677, 0.13360323886639677, 0.13360323886639677, 0.13360323886639677, 0.13360323886639677, 0.13360323886639677, 0.13360323886639677, 0.13360323886639677, 0.13360323886639677, 0.13360323886639677, 0.13360323886639677, 0.13765182186234817, 0.13360323886639677, 0.13360323886639677, 0.13360323886639677, 0.13360323886639677, 0.13360323886639677, 0.13360323886639677, 0.13360323886639677, 0.13360323886639677, 0.13360323886639677, 0.13360323886639677, 0.13360323886639677, 0.12955465587044535, 0.12955465587044535, 0.12955465587044535, 0.12955465587044535, 0.12955465587044535, 0.12955465587044535, 0.12955465587044535, 0.12955465587044535, 0.12955465587044535, 0.13360323886639677, 0.13360323886639677, 0.13765182186234817, 0.13765182186234817, 0.1417004048582996, 0.13765182186234817, 0.13765182186234817, 0.46558704453441296, 0.13360323886639677, 0.13360323886639677, 0.12955465587044535, 0.13765182186234817, 0.12955465587044535, 0.13765182186234817, 0.13360323886639677, 0.8218623481781376, 0.8178137651821862, 0.12955465587044535, 0.12955465587044535, 0.12955465587044535, 0.12955465587044535, 0.12955465587044535, 0.12955465587044535, 0.12955465587044535, 0.12955465587044535, 0.12955465587044535, 0.12955465587044535, 0.16194331983805668, 0.22267206477732793, 0.23481781376518218, 0.242914979757085, 0.242914979757085, 0.242914979757085, 0.24696356275303644, 0.24696356275303644, 0.242914979757085, 0.242914979757085, 0.242914979757085, 0.24696356275303644, 0.25101214574898784, 0.25101214574898784, 0.24696356275303644, 0.25101214574898784, 0.25101214574898784, 0.25101214574898784, 0.25101214574898784, 0.25101214574898784, 0.26720647773279355, 0.7692307692307693, 0.25101214574898784, 0.24696356275303644, 0.24696356275303644, 0.2388663967611336, 0.23076923076923078, 0.8097165991902834, 0.7854251012145749, 0.19433198380566802, 0.19433198380566802, 0.19433198380566802, 0.19433198380566802, 0.19433198380566802, 0.19433198380566802, 0.19433198380566802, 0.19433198380566802, 0.19433198380566802, 0.19433198380566802, 0.19433198380566802, 0.19433198380566802, 0.19433198380566802, 0.19433198380566802, 0.19433198380566802, 0.19433198380566802, 0.19433198380566802, 0.19433198380566802, 0.19433198380566802, 0.19433198380566802, 0.19433198380566802, 0.19838056680161945, 0.19838056680161945, 0.19838056680161945, 0.19838056680161945, 0.19838056680161945, 0.19838056680161945, 0.20242914979757085, 0.20647773279352227, 0.20242914979757085, 0.20242914979757085, 0.20242914979757085, 0.20242914979757085, 0.20647773279352227, 0.20242914979757085, 0.20647773279352227, 0.20647773279352227, 0.2145748987854251, 0.2145748987854251, 0.21862348178137653, 0.22672064777327935, 0.23481781376518218, 0.24696356275303644, 0.24696356275303644, 0.24696356275303644, 0.2388663967611336, 0.2388663967611336, 0.2388663967611336, 0.2388663967611336, 0.2388663967611336, 0.2388663967611336, 0.2388663967611336, 0.2388663967611336, 0.2388663967611336, 0.2388663967611336, 0.2388663967611336, 0.2388663967611336, 0.2388663967611336, 0.2388663967611336, 0.23481781376518218, 0.24696356275303644, 0.23481781376518218, 0.2388663967611336, 0.24696356275303644, 0.242914979757085, 0.2388663967611336, 0.2388663967611336, 0.2388663967611336, 0.242914979757085, 0.242914979757085, 0.8785425101214575, 0.8623481781376519, 0.242914979757085, 0.242914979757085, 0.242914979757085, 0.242914979757085, 0.242914979757085, 0.242914979757085, 0.242914979757085, 0.242914979757085, 0.242914979757085, 0.242914979757085, 0.242914979757085, 0.2388663967611336, 0.2388663967611336, 0.2388663967611336, 0.2388663967611336, 0.2388663967611336, 0.2388663967611336, 0.2591093117408907, 0.6882591093117408, 0.6720647773279352, 0.3765182186234818, 0.2591093117408907, 0.8785425101214575, 0.9230769230769231, 0.8744939271255061, 0.25101214574898784, 0.24696356275303644, 0.23481781376518218, 0.23481781376518218, 0.23481781376518218, 0.23481781376518218, 0.23481781376518218, 0.23481781376518218, 0.23481781376518218, 0.23481781376518218, 0.23481781376518218, 0.23481781376518218, 0.23076923076923078, 0.23076923076923078, 0.23076923076923078, 0.23076923076923078, 0.23481781376518218, 0.23481781376518218, 0.242914979757085, 0.23076923076923078, 0.23076923076923078, 0.2550607287449393, 0.2550607287449393, 0.23481781376518218, 0.23481781376518218, 0.23481781376518218, 0.2388663967611336, 0.2388663967611336, 0.2388663967611336, 0.23481781376518218, 0.22672064777327935, 0.22267206477732793, 0.22267206477732793, 0.22672064777327935, 0.22672064777327935, 0.42105263157894735, 0.7449392712550608, 0.22672064777327935, 0.22267206477732793, 0.21862348178137653, 0.21862348178137653, 0.21862348178137653, 0.21862348178137653, 0.21862348178137653, 0.21862348178137653, 0.21862348178137653, 0.21862348178137653, 0.21862348178137653, 0.8299595141700404, 0.8299595141700404, 0.8259109311740891, 0.21862348178137653, 0.2631578947368421, 0.21862348178137653, 0.2145748987854251, 0.2145748987854251, 0.2550607287449393, 0.2145748987854251, 0.21862348178137653, 0.21862348178137653, 0.21862348178137653, 0.854251012145749, 0.854251012145749, 0.854251012145749, 0.854251012145749, 0.854251012145749, 0.854251012145749, 0.854251012145749, 0.854251012145749, 0.854251012145749, 0.854251012145749, 0.854251012145749, 0.854251012145749, 0.854251012145749, 0.8623481781376519, 0.8623481781376519, 0.8704453441295547, 0.8704453441295547, 0.8744939271255061, 0.8825910931174089, 0.8825910931174089, 0.8825910931174089, 0.8906882591093117, 0.8947368421052632, 0.8947368421052632, 0.902834008097166, 0.9109311740890689, 0.9190283400809717, 0.9190283400809717, 0.9230769230769231, 0.9271255060728745, 0.9392712550607287, 0.9433198380566802, 0.9433198380566802, 0.9433198380566802, 0.9433198380566802, 0.9433198380566802, 0.9433198380566802, 0.9392712550607287, 0.9271255060728745, 0.9271255060728745, 0.9230769230769231, 0.9190283400809717, 0.9149797570850202, 0.902834008097166, 0.8987854251012146, 0.8947368421052632, 0.8947368421052632, 0.8825910931174089, 0.8825910931174089, 0.8825910931174089, 0.8785425101214575, 0.8744939271255061, 0.8704453441295547, 0.8623481781376519, 0.8623481781376519, 0.854251012145749, 0.854251012145749, 0.854251012145749, 0.854251012145749, 0.854251012145749, 0.854251012145749, 0.854251012145749, 0.854251012145749, 0.854251012145749, 0.854251012145749, 0.854251012145749, 0.854251012145749, 0.854251012145749, 0.854251012145749, 0.2145748987854251, 0.21862348178137653, 0.21862348178137653, 0.2145748987854251, 0.2145748987854251, 0.2145748987854251, 0.2145748987854251, 0.2145748987854251, 0.2145748987854251, 0.2145748987854251, 0.2145748987854251, 0.2145748987854251, 0.2145748987854251, 0.2145748987854251, 0.2145748987854251, 0.2145748987854251, 0.2145748987854251, 0.21862348178137653, 0.21862348178137653, 0.21862348178137653, 0.21862348178137653, 0.21862348178137653, 0.21862348178137653, 0.21862348178137653, 0.21862348178137653, 0.21862348178137653, 0.21862348178137653, 0.21862348178137653, 0.21862348178137653, 0.8461538461538461, 0.805668016194332, 0.21862348178137653, 0.22672064777327935, 0.22267206477732793, 0.22267206477732793, 0.22267206477732793, 0.22267206477732793, 0.22267206477732793, 0.23481781376518218, 0.27125506072874495], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4321.gap.json b/pfam_gap_rates/DUF4321.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..dda681464647ba69023ba1df23682a789df898af
--- /dev/null
+++ b/pfam_gap_rates/DUF4321.gap.json
@@ -0,0 +1 @@
+{"family": "DUF4321", "n_seqs": 175, "length": 48, "gap_rates": [0.42857142857142855, 0.2, 0.10857142857142857, 0.09142857142857143, 0.08571428571428572, 0.06857142857142857, 0.05142857142857143, 0.05142857142857143, 0.045714285714285714, 0.02857142857142857, 0.02857142857142857, 0.02857142857142857, 0.05714285714285714, 0.44571428571428573, 0.022857142857142857, 0.14285714285714285, 0.005714285714285714, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.005714285714285714, 0.0, 0.03428571428571429, 0.03428571428571429, 0.03428571428571429, 0.09714285714285714, 0.2057142857142857], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4333.gap.json b/pfam_gap_rates/DUF4333.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..dfb760cab27f6225ce1e55400c40c420a1c2f3e6
--- /dev/null
+++ b/pfam_gap_rates/DUF4333.gap.json
@@ -0,0 +1 @@
+{"family": "DUF4333", "n_seqs": 122, "length": 87, "gap_rates": [0.8114754098360656, 0.5491803278688525, 0.45081967213114754, 0.39344262295081966, 0.3770491803278688, 0.36065573770491804, 0.36065573770491804, 0.3524590163934426, 0.4672131147540984, 0.9426229508196722, 0.8770491803278688, 0.4672131147540984, 0.4016393442622951, 0.319672131147541, 0.20491803278688525, 0.18032786885245902, 0.11475409836065574, 0.09016393442622951, 0.07377049180327869, 0.06557377049180328, 0.040983606557377046, 0.03278688524590164, 0.02459016393442623, 0.00819672131147541, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.02459016393442623, 0.00819672131147541, 0.860655737704918, 0.860655737704918, 0.860655737704918, 0.09016393442622951, 0.03278688524590164, 0.04918032786885246, 0.5983606557377049, 0.05737704918032787, 0.00819672131147541, 0.0, 0.0, 0.01639344262295082, 0.0, 0.0, 0.0, 0.9262295081967213, 0.0, 0.00819672131147541, 0.0, 0.8852459016393442, 0.8442622950819673, 0.0, 0.0, 0.0, 0.0, 0.0, 0.00819672131147541, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.6721311475409836, 0.0, 0.0, 0.0, 0.0, 0.0, 0.00819672131147541, 0.00819672131147541, 0.00819672131147541, 0.00819672131147541, 0.02459016393442623, 0.01639344262295082, 0.02459016393442623, 0.040983606557377046, 0.07377049180327869, 0.13934426229508196, 0.2540983606557377], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4375.gap.json b/pfam_gap_rates/DUF4375.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c8d3fb1f35c9a9040b05bacb6d2e13b317e734f7
--- /dev/null
+++ b/pfam_gap_rates/DUF4375.gap.json
@@ -0,0 +1 @@
+{"family": "DUF4375", "n_seqs": 118, "length": 126, "gap_rates": [0.6694915254237288, 0.3559322033898305, 0.22033898305084745, 0.1864406779661017, 0.13559322033898305, 0.11864406779661017, 0.1016949152542373, 0.0847457627118644, 0.07627118644067797, 0.059322033898305086, 0.05084745762711865, 0.03389830508474576, 0.03389830508474576, 0.025423728813559324, 0.025423728813559324, 0.01694915254237288, 0.01694915254237288, 0.01694915254237288, 0.01694915254237288, 0.01694915254237288, 0.01694915254237288, 0.01694915254237288, 0.01694915254237288, 0.01694915254237288, 0.01694915254237288, 0.00847457627118644, 0.00847457627118644, 0.00847457627118644, 0.00847457627118644, 0.00847457627118644, 0.00847457627118644, 0.00847457627118644, 0.00847457627118644, 0.01694915254237288, 0.01694915254237288, 0.00847457627118644, 0.00847457627118644, 0.00847457627118644, 0.6186440677966102, 0.5847457627118644, 0.00847457627118644, 0.00847457627118644, 0.00847457627118644, 0.00847457627118644, 0.00847457627118644, 0.00847457627118644, 0.00847457627118644, 0.00847457627118644, 0.00847457627118644, 0.00847457627118644, 0.00847457627118644, 0.00847457627118644, 0.00847457627118644, 0.00847457627118644, 0.00847457627118644, 0.00847457627118644, 0.00847457627118644, 0.00847457627118644, 0.00847457627118644, 0.00847457627118644, 0.00847457627118644, 0.00847457627118644, 0.00847457627118644, 0.00847457627118644, 0.8813559322033898, 0.059322033898305086, 0.0847457627118644, 0.0847457627118644, 0.06779661016949153, 0.06779661016949153, 0.06779661016949153, 0.059322033898305086, 0.05084745762711865, 0.06779661016949153, 0.0423728813559322, 0.0423728813559322, 0.05084745762711865, 0.05084745762711865, 0.05084745762711865, 0.06779661016949153, 0.07627118644067797, 0.1694915254237288, 0.11864406779661017, 0.11016949152542373, 0.09322033898305085, 0.059322033898305086, 0.1016949152542373, 0.11016949152542373, 0.11016949152542373, 0.5338983050847458, 0.8813559322033898, 0.7966101694915254, 0.13559322033898305, 0.09322033898305085, 0.07627118644067797, 0.06779661016949153, 0.06779661016949153, 0.06779661016949153, 0.06779661016949153, 0.06779661016949153, 0.07627118644067797, 0.07627118644067797, 0.07627118644067797, 0.09322033898305085, 0.1016949152542373, 0.0847457627118644, 0.11864406779661017, 0.0847457627118644, 0.0847457627118644, 0.9152542372881356, 0.11864406779661017, 0.13559322033898305, 0.11864406779661017, 0.11864406779661017, 0.11864406779661017, 0.13559322033898305, 0.1440677966101695, 0.1440677966101695, 0.17796610169491525, 0.2033898305084746, 0.2288135593220339, 0.2457627118644068, 0.2542372881355932, 0.3220338983050847, 0.3983050847457627, 0.4067796610169492], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4397.gap.json b/pfam_gap_rates/DUF4397.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..9141140e9fa544849ccfa2dad81676930b42f4f2
--- /dev/null
+++ b/pfam_gap_rates/DUF4397.gap.json
@@ -0,0 +1 @@
+{"family": "DUF4397", "n_seqs": 439, "length": 138, "gap_rates": [0.44646924829157175, 0.23690205011389523, 0.14578587699316628, 0.10933940774487472, 0.0979498861047836, 0.09567198177676538, 0.09339407744874716, 0.09339407744874716, 0.08656036446469248, 0.08656036446469248, 0.07972665148063782, 0.9498861047835991, 0.9476082004555809, 0.1845102505694761, 0.06605922551252848, 0.06378132118451026, 0.06150341685649203, 0.05922551252847381, 0.05922551252847381, 0.0683371298405467, 0.9248291571753986, 0.05694760820045558, 0.04100227790432802, 0.9453302961275627, 0.9248291571753986, 0.05922551252847381, 0.0387243735763098, 0.03416856492027335, 0.025056947608200455, 0.908883826879271, 0.8041002277904328, 0.02733485193621868, 0.02050113895216401, 0.02050113895216401, 0.015945330296127564, 0.01366742596810934, 0.01366742596810934, 0.01366742596810934, 0.01366742596810934, 0.011389521640091117, 0.004555808656036446, 0.004555808656036446, 0.011389521640091117, 0.004555808656036446, 0.002277904328018223, 0.002277904328018223, 0.002277904328018223, 0.002277904328018223, 0.002277904328018223, 0.9498861047835991, 0.01366742596810934, 0.004555808656036446, 0.002277904328018223, 0.002277904328018223, 0.002277904328018223, 0.002277904328018223, 0.9407744874715261, 0.30068337129840544, 0.30751708428246016, 0.2984054669703872, 0.2984054669703872, 0.32801822323462415, 0.9453302961275627, 0.6537585421412301, 0.9407744874715261, 0.6241457858769932, 0.5330296127562643, 0.47380410022779046, 0.20956719817767655, 0.10250569476082004, 0.0387243735763098, 0.08656036446469248, 0.2984054669703872, 0.1366742596810934, 0.015945330296127564, 0.018223234624145785, 0.01366742596810934, 0.05466970387243736, 0.009111617312072893, 0.00683371298405467, 0.00683371298405467, 0.00683371298405467, 0.00683371298405467, 0.00683371298405467, 0.009111617312072893, 0.04100227790432802, 0.009111617312072893, 0.00683371298405467, 0.015945330296127564, 0.015945330296127564, 0.01366742596810934, 0.011389521640091117, 0.01366742596810934, 0.015945330296127564, 0.018223234624145785, 0.7357630979498861, 0.8861047835990888, 0.9066059225512528, 0.8086560364464692, 0.5444191343963554, 0.03416856492027335, 0.07972665148063782, 0.07061503416856492, 0.07972665148063782, 0.0774487471526196, 0.08200455580865604, 0.10250569476082004, 0.1252847380410023, 0.13895216400911162, 0.1958997722095672, 0.8838268792710706, 0.19134396355353075, 0.27790432801822323, 0.2164009111617312, 0.22095671981776766, 0.22323462414578588, 0.25740318906605925, 0.23690205011389523, 0.23917995444191345, 0.24145785876993167, 0.2437357630979499, 0.2437357630979499, 0.2437357630979499, 0.24145785876993167, 0.24145785876993167, 0.2437357630979499, 0.2460136674259681, 0.2460136674259681, 0.2528473804100228, 0.3621867881548975, 0.29157175398633256, 0.30068337129840544, 0.30751708428246016, 0.32574031890660593, 0.3462414578587699, 0.37585421412300685, 0.42596810933940776, 0.7835990888382688], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4411.gap.json b/pfam_gap_rates/DUF4411.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e3fe019ef2f2aa23b43175dbe9c5899b6c36f75c
--- /dev/null
+++ b/pfam_gap_rates/DUF4411.gap.json
@@ -0,0 +1 @@
+{"family": "DUF4411", "n_seqs": 112, "length": 179, "gap_rates": [0.15178571428571427, 0.11607142857142858, 0.10714285714285714, 0.10714285714285714, 0.09821428571428571, 0.08928571428571429, 0.08928571428571429, 0.08928571428571429, 0.10714285714285714, 0.08928571428571429, 0.09821428571428571, 0.16071428571428573, 0.10714285714285714, 0.09821428571428571, 0.10714285714285714, 0.09821428571428571, 0.08928571428571429, 0.13392857142857142, 0.08928571428571429, 0.08928571428571429, 0.08928571428571429, 0.08928571428571429, 0.09821428571428571, 0.08928571428571429, 0.08928571428571429, 0.08928571428571429, 0.08928571428571429, 0.08928571428571429, 0.08928571428571429, 0.10714285714285714, 0.10714285714285714, 0.11607142857142858, 0.11607142857142858, 0.11607142857142858, 0.08035714285714286, 0.08035714285714286, 0.08035714285714286, 0.08035714285714286, 0.08035714285714286, 0.08035714285714286, 0.08035714285714286, 0.08035714285714286, 0.08035714285714286, 0.08035714285714286, 0.08035714285714286, 0.08035714285714286, 0.08035714285714286, 0.08035714285714286, 0.125, 0.125, 0.7946428571428571, 0.9196428571428571, 0.9464285714285714, 0.9107142857142857, 0.75, 0.09821428571428571, 0.10714285714285714, 0.10714285714285714, 0.11607142857142858, 0.09821428571428571, 0.09821428571428571, 0.09821428571428571, 0.09821428571428571, 0.09821428571428571, 0.09821428571428571, 0.09821428571428571, 0.09821428571428571, 0.09821428571428571, 0.6785714285714286, 0.5357142857142857, 0.35714285714285715, 0.13392857142857142, 0.125, 0.13392857142857142, 0.14285714285714285, 0.13392857142857142, 0.125, 0.16071428571428573, 0.13392857142857142, 0.125, 0.125, 0.125, 0.11607142857142858, 0.11607142857142858, 0.125, 0.125, 0.13392857142857142, 0.13392857142857142, 0.13392857142857142, 0.14285714285714285, 0.38392857142857145, 0.7767857142857143, 0.4375, 0.38392857142857145, 0.21428571428571427, 0.16071428571428573, 0.14285714285714285, 0.11607142857142858, 0.10714285714285714, 0.11607142857142858, 0.14285714285714285, 0.24107142857142858, 0.29464285714285715, 0.9464285714285714, 0.36607142857142855, 0.3392857142857143, 0.32142857142857145, 0.32142857142857145, 0.30357142857142855, 0.7678571428571429, 0.7232142857142857, 0.08928571428571429, 0.07142857142857142, 0.07142857142857142, 0.07142857142857142, 0.08035714285714286, 0.08035714285714286, 0.07142857142857142, 0.07142857142857142, 0.07142857142857142, 0.07142857142857142, 0.07142857142857142, 0.0625, 0.0625, 0.9196428571428571, 0.0625, 0.0625, 0.0625, 0.0625, 0.07142857142857142, 0.0625, 0.0625, 0.0625, 0.0625, 0.0625, 0.0625, 0.8571428571428571, 0.9017857142857143, 0.9464285714285714, 0.8839285714285714, 0.8303571428571429, 0.32142857142857145, 0.17857142857142858, 0.17857142857142858, 0.1875, 0.10714285714285714, 0.125, 0.9464285714285714, 0.9375, 0.6071428571428571, 0.16964285714285715, 0.08928571428571429, 0.08035714285714286, 0.08035714285714286, 0.08035714285714286, 0.08035714285714286, 0.09821428571428571, 0.09821428571428571, 0.09821428571428571, 0.09821428571428571, 0.09821428571428571, 0.09821428571428571, 0.09821428571428571, 0.09821428571428571, 0.09821428571428571, 0.09821428571428571, 0.10714285714285714, 0.10714285714285714, 0.10714285714285714, 0.10714285714285714, 0.11607142857142858, 0.11607142857142858, 0.125, 0.14285714285714285, 0.19642857142857142, 0.22321428571428573, 0.29464285714285715, 0.375, 0.49107142857142855], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF444.gap.json b/pfam_gap_rates/DUF444.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..85d02f175abb7764a2d0d2171f31397aa0e2acd3
--- /dev/null
+++ b/pfam_gap_rates/DUF444.gap.json
@@ -0,0 +1 @@
+{"family": "DUF444", "n_seqs": 676, "length": 434, "gap_rates": [0.8683431952662722, 0.6627218934911243, 0.628698224852071, 0.5961538461538461, 0.5680473372781065, 0.5118343195266272, 0.4822485207100592, 0.4807692307692308, 0.47781065088757396, 0.46893491124260356, 0.46153846153846156, 0.4437869822485207, 0.4245562130177515, 0.40384615384615385, 0.39644970414201186, 0.39349112426035504, 0.39201183431952663, 0.39201183431952663, 0.39201183431952663, 0.39201183431952663, 0.40384615384615385, 0.3905325443786982, 0.3905325443786982, 0.3905325443786982, 0.3905325443786982, 0.3905325443786982, 0.3905325443786982, 0.3905325443786982, 0.3905325443786982, 0.3905325443786982, 0.3905325443786982, 0.3890532544378698, 0.3890532544378698, 0.3890532544378698, 0.3890532544378698, 0.3890532544378698, 0.3890532544378698, 0.3890532544378698, 0.3890532544378698, 0.3890532544378698, 0.3890532544378698, 0.3890532544378698, 0.3890532544378698, 0.4068047337278107, 0.3890532544378698, 0.386094674556213, 0.3801775147928994, 0.3772189349112426, 0.3772189349112426, 0.3757396449704142, 0.371301775147929, 0.371301775147929, 0.3698224852071006, 0.3668639053254438, 0.3683431952662722, 0.3668639053254438, 0.363905325443787, 0.3609467455621302, 0.3624260355029586, 0.3609467455621302, 0.3594674556213018, 0.3594674556213018, 0.3594674556213018, 0.3594674556213018, 0.3594674556213018, 0.9171597633136095, 0.6834319526627219, 0.43047337278106507, 0.363905325443787, 0.35798816568047337, 0.35650887573964496, 0.35502958579881655, 0.35798816568047337, 0.3594674556213018, 0.35798816568047337, 0.35650887573964496, 0.35502958579881655, 0.35798816568047337, 0.35798816568047337, 0.4068047337278107, 0.40532544378698226, 0.35798816568047337, 0.35798816568047337, 0.3594674556213018, 0.3594674556213018, 0.3594674556213018, 0.35650887573964496, 0.35650887573964496, 0.35650887573964496, 0.35798816568047337, 0.3609467455621302, 0.363905325443787, 0.36538461538461536, 0.36538461538461536, 0.3831360946745562, 0.3742603550295858, 0.40532544378698226, 0.40088757396449703, 0.5458579881656804, 0.47928994082840237, 0.48520710059171596, 0.4363905325443787, 0.9171597633136095, 0.8801775147928994, 0.3772189349112426, 0.363905325443787, 0.3594674556213018, 0.35798816568047337, 0.9482248520710059, 0.35798816568047337, 0.9482248520710059, 0.9186390532544378, 0.35798816568047337, 0.35798816568047337, 0.3609467455621302, 0.3594674556213018, 0.3668639053254438, 0.35650887573964496, 0.35798816568047337, 0.35650887573964496, 0.35650887573964496, 0.35650887573964496, 0.35650887573964496, 0.35650887573964496, 0.35650887573964496, 0.35650887573964496, 0.35650887573964496, 0.35650887573964496, 0.35650887573964496, 0.35355029585798814, 0.35355029585798814, 0.35355029585798814, 0.35355029585798814, 0.35355029585798814, 0.35355029585798814, 0.35355029585798814, 0.3668639053254438, 0.35355029585798814, 0.35355029585798814, 0.35355029585798814, 0.35355029585798814, 0.35355029585798814, 0.35502958579881655, 0.9245562130177515, 0.35502958579881655, 0.35355029585798814, 0.35355029585798814, 0.35650887573964496, 0.35355029585798814, 0.35355029585798814, 0.35355029585798814, 0.35355029585798814, 0.35355029585798814, 0.35355029585798814, 0.35355029585798814, 0.35355029585798814, 0.35355029585798814, 0.3742603550295858, 0.35355029585798814, 0.35355029585798814, 0.35355029585798814, 0.35355029585798814, 0.35355029585798814, 0.35355029585798814, 0.35355029585798814, 0.35355029585798814, 0.35355029585798814, 0.35502958579881655, 0.35502958579881655, 0.35355029585798814, 0.35355029585798814, 0.35355029585798814, 0.35355029585798814, 0.35355029585798814, 0.35355029585798814, 0.35355029585798814, 0.35355029585798814, 0.35355029585798814, 0.35798816568047337, 0.3594674556213018, 0.3609467455621302, 0.4068047337278107, 0.4378698224852071, 0.4896449704142012, 0.5295857988165681, 0.6375739644970414, 0.6405325443786982, 0.6464497041420119, 0.6523668639053254, 0.6538461538461539, 0.6642011834319527, 0.665680473372781, 0.6686390532544378, 0.6937869822485208, 0.6937869822485208, 0.6937869822485208, 0.6967455621301775, 0.6982248520710059, 0.6967455621301775, 0.6967455621301775, 0.6923076923076923, 0.6937869822485208, 0.6923076923076923, 0.6893491124260355, 0.6982248520710059, 0.7085798816568047, 0.9304733727810651, 0.8195266272189349, 0.7529585798816568, 0.7100591715976331, 0.7041420118343196, 0.7337278106508875, 0.6849112426035503, 0.6834319526627219, 0.6804733727810651, 0.6789940828402367, 0.6775147928994083, 0.6745562130177515, 0.6760355029585798, 0.6730769230769231, 0.6701183431952663, 0.665680473372781, 0.6612426035502958, 0.6523668639053254, 0.6316568047337278, 0.6301775147928994, 0.6227810650887574, 0.613905325443787, 0.606508875739645, 0.6005917159763313, 0.5887573964497042, 0.5680473372781065, 0.5517751479289941, 0.47928994082840237, 0.4275147928994083, 0.3624260355029586, 0.5591715976331361, 0.3431952662721893, 0.3431952662721893, 0.34467455621301774, 0.3431952662721893, 0.3431952662721893, 0.3431952662721893, 0.34171597633136097, 0.34171597633136097, 0.34171597633136097, 0.34171597633136097, 0.34171597633136097, 0.34171597633136097, 0.34023668639053256, 0.33875739644970415, 0.33875739644970415, 0.33875739644970415, 0.33875739644970415, 0.33875739644970415, 0.33875739644970415, 0.33727810650887574, 0.33727810650887574, 0.33727810650887574, 0.33727810650887574, 0.33727810650887574, 0.33727810650887574, 0.33727810650887574, 0.33727810650887574, 0.33727810650887574, 0.33727810650887574, 0.33727810650887574, 0.33727810650887574, 0.33727810650887574, 0.33727810650887574, 0.33727810650887574, 0.33727810650887574, 0.33727810650887574, 0.33727810650887574, 0.33727810650887574, 0.33727810650887574, 0.33727810650887574, 0.33875739644970415, 0.33727810650887574, 0.33727810650887574, 0.33727810650887574, 0.33727810650887574, 0.33727810650887574, 0.33727810650887574, 0.33727810650887574, 0.33727810650887574, 0.33727810650887574, 0.33727810650887574, 0.33727810650887574, 0.33727810650887574, 0.33727810650887574, 0.33727810650887574, 0.33727810650887574, 0.33727810650887574, 0.33727810650887574, 0.33727810650887574, 0.33727810650887574, 0.33727810650887574, 0.33727810650887574, 0.33727810650887574, 0.33727810650887574, 0.33727810650887574, 0.33727810650887574, 0.33727810650887574, 0.33875739644970415, 0.33875739644970415, 0.33727810650887574, 0.33727810650887574, 0.33579881656804733, 0.33579881656804733, 0.33579881656804733, 0.33579881656804733, 0.33579881656804733, 0.33727810650887574, 0.33727810650887574, 0.33727810650887574, 0.33727810650887574, 0.33727810650887574, 0.33727810650887574, 0.33727810650887574, 0.33727810650887574, 0.33727810650887574, 0.33579881656804733, 0.33579881656804733, 0.33579881656804733, 0.33579881656804733, 0.33579881656804733, 0.33579881656804733, 0.33579881656804733, 0.33579881656804733, 0.33579881656804733, 0.33579881656804733, 0.33579881656804733, 0.33579881656804733, 0.34615384615384615, 0.33727810650887574, 0.33727810650887574, 0.33579881656804733, 0.33727810650887574, 0.33579881656804733, 0.33579881656804733, 0.33579881656804733, 0.33579881656804733, 0.33579881656804733, 0.33579881656804733, 0.33579881656804733, 0.33579881656804733, 0.33579881656804733, 0.33579881656804733, 0.33579881656804733, 0.33579881656804733, 0.33579881656804733, 0.33579881656804733, 0.33579881656804733, 0.33579881656804733, 0.33579881656804733, 0.33727810650887574, 0.33875739644970415, 0.33875739644970415, 0.33875739644970415, 0.33875739644970415, 0.34023668639053256, 0.34023668639053256, 0.33875739644970415, 0.613905325443787, 0.34763313609467456, 0.34911242603550297, 0.34911242603550297, 0.35650887573964496, 0.34467455621301774, 0.3683431952662722, 0.3698224852071006, 0.35502958579881655, 0.35650887573964496, 0.35650887573964496, 0.3594674556213018, 0.363905325443787, 0.3668639053254438, 0.371301775147929, 0.3698224852071006, 0.3698224852071006, 0.3698224852071006, 0.3698224852071006, 0.3698224852071006, 0.9112426035502958, 0.9393491124260355, 0.9497041420118343, 0.9304733727810651, 0.8727810650887574, 0.8284023668639053, 0.5946745562130178, 0.42011834319526625, 0.3772189349112426, 0.3772189349112426, 0.3772189349112426, 0.3772189349112426, 0.3772189349112426, 0.378698224852071, 0.3772189349112426, 0.3772189349112426, 0.3772189349112426, 0.3772189349112426, 0.378698224852071, 0.378698224852071, 0.378698224852071, 0.3816568047337278, 0.6035502958579881, 0.6346153846153846, 0.9289940828402367, 0.386094674556213, 0.386094674556213, 0.38461538461538464, 0.38461538461538464, 0.38461538461538464, 0.38461538461538464, 0.38461538461538464, 0.38461538461538464, 0.38461538461538464, 0.38461538461538464, 0.38461538461538464, 0.38461538461538464, 0.386094674556213, 0.3875739644970414, 0.3875739644970414, 0.3875739644970414, 0.3875739644970414, 0.3875739644970414, 0.3875739644970414, 0.3875739644970414, 0.3890532544378698, 0.3890532544378698, 0.40384615384615385, 0.46893491124260356, 0.7085798816568047], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4440.gap.json b/pfam_gap_rates/DUF4440.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e3a4ecd7d7e96e7f54c2381a2ede32b910b56992
--- /dev/null
+++ b/pfam_gap_rates/DUF4440.gap.json
@@ -0,0 +1 @@
+{"family": "DUF4440", "n_seqs": 1157, "length": 126, "gap_rates": [0.634399308556612, 0.4641313742437338, 0.3439930855661193, 0.2428694900605013, 0.17718236819360414, 0.14866032843560933, 0.11840968020743302, 0.0898876404494382, 0.07605877268798616, 0.0682800345721694, 0.06309420916162489, 0.05790838375108038, 0.05012964563526361, 0.03889369057908384, 0.03543647363872083, 0.037165082108902334, 0.02247191011235955, 0.018150388936905792, 0.014693171996542784, 0.00950734658599827, 0.00950734658599827, 0.00950734658599827, 0.007778738115816767, 0.006914433880726016, 0.005185825410544511, 0.00432152117545376, 0.00432152117545376, 0.00432152117545376, 0.01296456352636128, 0.015557476231633534, 0.00950734658599827, 0.9118409680207433, 0.005185825410544511, 0.010371650821089023, 0.006914433880726016, 0.9308556611927399, 0.010371650821089023, 0.06309420916162489, 0.007778738115816767, 0.9248055315471045, 0.006050129645635264, 0.8193604148660328, 0.003457216940363008, 0.001728608470181504, 0.001728608470181504, 0.00864304235090752, 0.006914433880726016, 0.00432152117545376, 0.003457216940363008, 0.0025929127052722557, 0.019878997407087293, 0.9403630077787382, 0.03111495246326707, 0.05704407951598963, 0.8167675021607606, 0.8755401901469317, 0.7796024200518582, 0.058772687986171135, 0.07260155574762317, 0.056179775280898875, 0.037165082108902334, 0.02247191011235955, 0.9256698357821953, 0.00950734658599827, 0.005185825410544511, 0.00432152117545376, 0.9178910976663786, 0.8910976663785652, 0.001728608470181504, 0.00432152117545376, 0.006050129645635264, 0.006050129645635264, 0.9351771823681936, 0.902333621434745, 0.003457216940363008, 0.003457216940363008, 0.003457216940363008, 0.003457216940363008, 0.003457216940363008, 0.00432152117545376, 0.6802074330164217, 0.006050129645635264, 0.005185825410544511, 0.9308556611927399, 0.005185825410544511, 0.005185825410544511, 0.006050129645635264, 0.006914433880726016, 0.006914433880726016, 0.00950734658599827, 0.00950734658599827, 0.04407951598962835, 0.02592912705272256, 0.033707865168539325, 0.03889369057908384, 0.07519446845289542, 0.9446845289541919, 0.10025929127052723, 0.10371650821089023, 0.8660328435609335, 0.08297320656871218, 0.08902333621434745, 0.891961970613656, 0.28349178910976663, 0.29472774416594644, 0.23336214347450301, 0.18668971477960242, 0.06395851339671564, 0.052722558340535866, 0.028522039757994815, 0.021607605877268798, 0.018150388936905792, 0.018150388936905792, 0.018150388936905792, 0.01901469317199654, 0.020743301642178046, 0.021607605877268798, 0.027657735522904063, 0.03197925669835782, 0.8150388936905791, 0.04148660328435609, 0.04753673292999136, 0.07000864304235091, 0.0847018150388937, 0.12705272255834055, 0.32757130509939497], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF446.gap.json b/pfam_gap_rates/DUF446.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..8e2e91e1c222aa5a8799539a6b42b90535149fce
--- /dev/null
+++ b/pfam_gap_rates/DUF446.gap.json
@@ -0,0 +1 @@
+{"family": "DUF446", "n_seqs": 106, "length": 99, "gap_rates": [0.8679245283018868, 0.37735849056603776, 0.18867924528301888, 0.10377358490566038, 0.04716981132075472, 0.03773584905660377, 0.03773584905660377, 0.03773584905660377, 0.03773584905660377, 0.03773584905660377, 0.03773584905660377, 0.03773584905660377, 0.03773584905660377, 0.03773584905660377, 0.03773584905660377, 0.03773584905660377, 0.03773584905660377, 0.03773584905660377, 0.03773584905660377, 0.03773584905660377, 0.04716981132075472, 0.03773584905660377, 0.03773584905660377, 0.03773584905660377, 0.03773584905660377, 0.03773584905660377, 0.03773584905660377, 0.03773584905660377, 0.03773584905660377, 0.03773584905660377, 0.03773584905660377, 0.03773584905660377, 0.03773584905660377, 0.03773584905660377, 0.03773584905660377, 0.03773584905660377, 0.03773584905660377, 0.03773584905660377, 0.03773584905660377, 0.02830188679245283, 0.02830188679245283, 0.02830188679245283, 0.02830188679245283, 0.018867924528301886, 0.018867924528301886, 0.018867924528301886, 0.018867924528301886, 0.018867924528301886, 0.009433962264150943, 0.009433962264150943, 0.009433962264150943, 0.009433962264150943, 0.009433962264150943, 0.009433962264150943, 0.009433962264150943, 0.009433962264150943, 0.009433962264150943, 0.009433962264150943, 0.0, 0.0, 0.0, 0.0, 0.018867924528301886, 0.009433962264150943, 0.0, 0.0, 0.009433962264150943, 0.0, 0.0, 0.0, 0.0, 0.009433962264150943, 0.009433962264150943, 0.009433962264150943, 0.009433962264150943, 0.009433962264150943, 0.009433962264150943, 0.009433962264150943, 0.009433962264150943, 0.009433962264150943, 0.009433962264150943, 0.009433962264150943, 0.009433962264150943, 0.8867924528301887, 0.3018867924528302, 0.05660377358490566, 0.05660377358490566, 0.04716981132075472, 0.018867924528301886, 0.018867924528301886, 0.018867924528301886, 0.018867924528301886, 0.018867924528301886, 0.018867924528301886, 0.018867924528301886, 0.018867924528301886, 0.018867924528301886, 0.08490566037735849, 0.5471698113207547], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4461.gap.json b/pfam_gap_rates/DUF4461.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..3758bf1d54cd5ffb9ef8a007901e181b68a8aa50
--- /dev/null
+++ b/pfam_gap_rates/DUF4461.gap.json
@@ -0,0 +1 @@
+{"family": "DUF4461", "n_seqs": 104, "length": 335, "gap_rates": [0.9326923076923077, 0.4807692307692308, 0.41346153846153844, 0.40384615384615385, 0.36538461538461536, 0.3557692307692308, 0.34615384615384615, 0.34615384615384615, 0.34615384615384615, 0.34615384615384615, 0.34615384615384615, 0.3557692307692308, 0.3557692307692308, 0.34615384615384615, 0.3557692307692308, 0.3557692307692308, 0.34615384615384615, 0.34615384615384615, 0.33653846153846156, 0.33653846153846156, 0.33653846153846156, 0.33653846153846156, 0.34615384615384615, 0.33653846153846156, 0.3173076923076923, 0.3173076923076923, 0.3173076923076923, 0.3173076923076923, 0.3173076923076923, 0.3173076923076923, 0.3173076923076923, 0.3173076923076923, 0.3076923076923077, 0.3076923076923077, 0.3076923076923077, 0.3076923076923077, 0.3076923076923077, 0.3076923076923077, 0.3076923076923077, 0.3076923076923077, 0.3076923076923077, 0.3076923076923077, 0.34615384615384615, 0.2980769230769231, 0.2980769230769231, 0.2980769230769231, 0.2980769230769231, 0.2980769230769231, 0.2980769230769231, 0.2980769230769231, 0.2980769230769231, 0.28846153846153844, 0.28846153846153844, 0.28846153846153844, 0.28846153846153844, 0.28846153846153844, 0.28846153846153844, 0.28846153846153844, 0.27884615384615385, 0.27884615384615385, 0.27884615384615385, 0.27884615384615385, 0.27884615384615385, 0.27884615384615385, 0.27884615384615385, 0.27884615384615385, 0.27884615384615385, 0.27884615384615385, 0.27884615384615385, 0.27884615384615385, 0.27884615384615385, 0.8365384615384616, 0.875, 0.9423076923076923, 0.8942307692307693, 0.875, 0.7980769230769231, 0.27884615384615385, 0.3942307692307692, 0.36538461538461536, 0.27884615384615385, 0.2692307692307692, 0.2692307692307692, 0.28846153846153844, 0.28846153846153844, 0.27884615384615385, 0.2692307692307692, 0.2692307692307692, 0.2692307692307692, 0.2692307692307692, 0.2692307692307692, 0.2692307692307692, 0.2692307692307692, 0.2692307692307692, 0.2692307692307692, 0.2692307692307692, 0.2692307692307692, 0.25, 0.25, 0.25, 0.25961538461538464, 0.25961538461538464, 0.25961538461538464, 0.25961538461538464, 0.25961538461538464, 0.25961538461538464, 0.27884615384615385, 0.27884615384615385, 0.25961538461538464, 0.25961538461538464, 0.25961538461538464, 0.25961538461538464, 0.25961538461538464, 0.25961538461538464, 0.2403846153846154, 0.25, 0.25, 0.25961538461538464, 0.27884615384615385, 0.27884615384615385, 0.27884615384615385, 0.8557692307692307, 0.8846153846153846, 0.8846153846153846, 0.8846153846153846, 0.8461538461538461, 0.2692307692307692, 0.25961538461538464, 0.25961538461538464, 0.25961538461538464, 0.25961538461538464, 0.25961538461538464, 0.25961538461538464, 0.25, 0.25, 0.2403846153846154, 0.2403846153846154, 0.2403846153846154, 0.2403846153846154, 0.2403846153846154, 0.2403846153846154, 0.2403846153846154, 0.2403846153846154, 0.2403846153846154, 0.2403846153846154, 0.2403846153846154, 0.2403846153846154, 0.25961538461538464, 0.2403846153846154, 0.2403846153846154, 0.2403846153846154, 0.2403846153846154, 0.2403846153846154, 0.36538461538461536, 0.41346153846153844, 0.4326923076923077, 0.7115384615384616, 0.2980769230769231, 0.28846153846153844, 0.27884615384615385, 0.25961538461538464, 0.25961538461538464, 0.25, 0.25, 0.25961538461538464, 0.25961538461538464, 0.25961538461538464, 0.25961538461538464, 0.25961538461538464, 0.25961538461538464, 0.25961538461538464, 0.2692307692307692, 0.2692307692307692, 0.2692307692307692, 0.2692307692307692, 0.2692307692307692, 0.2692307692307692, 0.2692307692307692, 0.2692307692307692, 0.28846153846153844, 0.28846153846153844, 0.2980769230769231, 0.8173076923076923, 0.5576923076923077, 0.36538461538461536, 0.3076923076923077, 0.28846153846153844, 0.2980769230769231, 0.2980769230769231, 0.9038461538461539, 0.9038461538461539, 0.9134615384615384, 0.9038461538461539, 0.9038461538461539, 0.5961538461538461, 0.5865384615384616, 0.5480769230769231, 0.49038461538461536, 0.9038461538461539, 0.2692307692307692, 0.2692307692307692, 0.2692307692307692, 0.2692307692307692, 0.2692307692307692, 0.27884615384615385, 0.25961538461538464, 0.25961538461538464, 0.2692307692307692, 0.33653846153846156, 0.27884615384615385, 0.27884615384615385, 0.8942307692307693, 0.8653846153846154, 0.2692307692307692, 0.2692307692307692, 0.25961538461538464, 0.25961538461538464, 0.25, 0.25, 0.25, 0.2403846153846154, 0.2403846153846154, 0.23076923076923078, 0.21153846153846154, 0.21153846153846154, 0.21153846153846154, 0.21153846153846154, 0.21153846153846154, 0.21153846153846154, 0.21153846153846154, 0.21153846153846154, 0.21153846153846154, 0.21153846153846154, 0.21153846153846154, 0.21153846153846154, 0.21153846153846154, 0.21153846153846154, 0.21153846153846154, 0.21153846153846154, 0.22115384615384615, 0.22115384615384615, 0.22115384615384615, 0.22115384615384615, 0.22115384615384615, 0.23076923076923078, 0.23076923076923078, 0.23076923076923078, 0.2403846153846154, 0.23076923076923078, 0.22115384615384615, 0.23076923076923078, 0.25, 0.25, 0.25961538461538464, 0.25, 0.23076923076923078, 0.23076923076923078, 0.23076923076923078, 0.22115384615384615, 0.21153846153846154, 0.22115384615384615, 0.21153846153846154, 0.21153846153846154, 0.21153846153846154, 0.21153846153846154, 0.21153846153846154, 0.20192307692307693, 0.21153846153846154, 0.20192307692307693, 0.20192307692307693, 0.20192307692307693, 0.20192307692307693, 0.19230769230769232, 0.19230769230769232, 0.19230769230769232, 0.18269230769230768, 0.20192307692307693, 0.20192307692307693, 0.22115384615384615, 0.22115384615384615, 0.20192307692307693, 0.20192307692307693, 0.20192307692307693, 0.20192307692307693, 0.20192307692307693, 0.20192307692307693, 0.20192307692307693, 0.20192307692307693, 0.20192307692307693, 0.20192307692307693, 0.21153846153846154, 0.21153846153846154, 0.21153846153846154, 0.21153846153846154, 0.21153846153846154, 0.21153846153846154, 0.21153846153846154, 0.21153846153846154, 0.21153846153846154, 0.3942307692307692, 0.4519230769230769, 0.4326923076923077, 0.8942307692307693, 0.8653846153846154, 0.2403846153846154, 0.2403846153846154, 0.23076923076923078, 0.23076923076923078, 0.23076923076923078, 0.23076923076923078, 0.23076923076923078, 0.2403846153846154, 0.25, 0.25, 0.25, 0.25, 0.25961538461538464, 0.25961538461538464, 0.25961538461538464, 0.9423076923076923, 0.9423076923076923, 0.25961538461538464, 0.25961538461538464, 0.25961538461538464, 0.25961538461538464, 0.25961538461538464, 0.25961538461538464, 0.25961538461538464, 0.25961538461538464, 0.25961538461538464, 0.27884615384615385, 0.27884615384615385, 0.28846153846153844, 0.3173076923076923, 0.5769230769230769], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4464.gap.json b/pfam_gap_rates/DUF4464.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..6f1058fb533611fefaa1d0589f4b9236b8fdb967
--- /dev/null
+++ b/pfam_gap_rates/DUF4464.gap.json
@@ -0,0 +1 @@
+{"family": "DUF4464", "n_seqs": 110, "length": 233, "gap_rates": [0.4, 0.2636363636363636, 0.20909090909090908, 0.2, 0.19090909090909092, 0.19090909090909092, 0.15454545454545454, 0.15454545454545454, 0.15454545454545454, 0.15454545454545454, 0.15454545454545454, 0.15454545454545454, 0.15454545454545454, 0.15454545454545454, 0.15454545454545454, 0.15454545454545454, 0.15454545454545454, 0.14545454545454545, 0.14545454545454545, 0.14545454545454545, 0.14545454545454545, 0.14545454545454545, 0.14545454545454545, 0.14545454545454545, 0.14545454545454545, 0.15454545454545454, 0.15454545454545454, 0.15454545454545454, 0.14545454545454545, 0.14545454545454545, 0.14545454545454545, 0.14545454545454545, 0.13636363636363635, 0.13636363636363635, 0.13636363636363635, 0.13636363636363635, 0.13636363636363635, 0.13636363636363635, 0.13636363636363635, 0.13636363636363635, 0.21818181818181817, 0.32727272727272727, 0.18181818181818182, 0.17272727272727273, 0.14545454545454545, 0.14545454545454545, 0.14545454545454545, 0.14545454545454545, 0.14545454545454545, 0.14545454545454545, 0.14545454545454545, 0.14545454545454545, 0.14545454545454545, 0.14545454545454545, 0.14545454545454545, 0.14545454545454545, 0.15454545454545454, 0.16363636363636364, 0.16363636363636364, 0.16363636363636364, 0.16363636363636364, 0.15454545454545454, 0.14545454545454545, 0.15454545454545454, 0.9363636363636364, 0.7090909090909091, 0.2818181818181818, 0.2, 0.21818181818181817, 0.20909090909090908, 0.20909090909090908, 0.19090909090909092, 0.2, 0.2, 0.2, 0.19090909090909092, 0.18181818181818182, 0.19090909090909092, 0.38181818181818183, 0.9363636363636364, 0.2, 0.35454545454545455, 0.19090909090909092, 0.19090909090909092, 0.19090909090909092, 0.2, 0.2, 0.2, 0.2, 0.2, 0.2, 0.19090909090909092, 0.19090909090909092, 0.19090909090909092, 0.19090909090909092, 0.19090909090909092, 0.2, 0.2, 0.19090909090909092, 0.19090909090909092, 0.18181818181818182, 0.17272727272727273, 0.16363636363636364, 0.16363636363636364, 0.16363636363636364, 0.16363636363636364, 0.16363636363636364, 0.16363636363636364, 0.16363636363636364, 0.20909090909090908, 0.17272727272727273, 0.24545454545454545, 0.16363636363636364, 0.16363636363636364, 0.16363636363636364, 0.16363636363636364, 0.16363636363636364, 0.16363636363636364, 0.17272727272727273, 0.17272727272727273, 0.17272727272727273, 0.17272727272727273, 0.17272727272727273, 0.17272727272727273, 0.17272727272727273, 0.18181818181818182, 0.19090909090909092, 0.18181818181818182, 0.18181818181818182, 0.9272727272727272, 0.9363636363636364, 0.9363636363636364, 0.9363636363636364, 0.9363636363636364, 0.9363636363636364, 0.9363636363636364, 0.9272727272727272, 0.2, 0.19090909090909092, 0.19090909090909092, 0.19090909090909092, 0.18181818181818182, 0.18181818181818182, 0.18181818181818182, 0.18181818181818182, 0.18181818181818182, 0.18181818181818182, 0.18181818181818182, 0.18181818181818182, 0.18181818181818182, 0.18181818181818182, 0.18181818181818182, 0.18181818181818182, 0.18181818181818182, 0.18181818181818182, 0.18181818181818182, 0.18181818181818182, 0.18181818181818182, 0.17272727272727273, 0.18181818181818182, 0.18181818181818182, 0.20909090909090908, 0.20909090909090908, 0.21818181818181817, 0.22727272727272727, 0.22727272727272727, 0.22727272727272727, 0.23636363636363636, 0.23636363636363636, 0.22727272727272727, 0.22727272727272727, 0.22727272727272727, 0.22727272727272727, 0.22727272727272727, 0.22727272727272727, 0.22727272727272727, 0.20909090909090908, 0.2, 0.20909090909090908, 0.20909090909090908, 0.20909090909090908, 0.21818181818181817, 0.24545454545454545, 0.22727272727272727, 0.22727272727272727, 0.22727272727272727, 0.22727272727272727, 0.22727272727272727, 0.22727272727272727, 0.22727272727272727, 0.22727272727272727, 0.22727272727272727, 0.22727272727272727, 0.22727272727272727, 0.22727272727272727, 0.22727272727272727, 0.22727272727272727, 0.22727272727272727, 0.22727272727272727, 0.23636363636363636, 0.23636363636363636, 0.22727272727272727, 0.22727272727272727, 0.5727272727272728, 0.23636363636363636, 0.24545454545454545, 0.24545454545454545, 0.24545454545454545, 0.24545454545454545, 0.24545454545454545, 0.24545454545454545, 0.2545454545454545, 0.2545454545454545, 0.2545454545454545, 0.2636363636363636, 0.2727272727272727, 0.2727272727272727, 0.2727272727272727, 0.2727272727272727, 0.2727272727272727, 0.2727272727272727, 0.2727272727272727, 0.2727272727272727, 0.2727272727272727, 0.2727272727272727, 0.2727272727272727, 0.2727272727272727, 0.2727272727272727, 0.2727272727272727, 0.2727272727272727, 0.2727272727272727, 0.3, 0.4], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4586.gap.json b/pfam_gap_rates/DUF4586.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..1ef85708d4a2d3bb71cb2e5f0adc0cfe91fe470a
--- /dev/null
+++ b/pfam_gap_rates/DUF4586.gap.json
@@ -0,0 +1 @@
+{"family": "DUF4586", "n_seqs": 136, "length": 400, "gap_rates": [0.7941176470588235, 0.5955882352941176, 0.47794117647058826, 0.38235294117647056, 0.34558823529411764, 0.29411764705882354, 0.29411764705882354, 0.16911764705882354, 0.16911764705882354, 0.16911764705882354, 0.16176470588235295, 0.16176470588235295, 0.16176470588235295, 0.16911764705882354, 0.16176470588235295, 0.19117647058823528, 0.19117647058823528, 0.18382352941176472, 0.9191176470588235, 0.9191176470588235, 0.9191176470588235, 0.9191176470588235, 0.9191176470588235, 0.8897058823529411, 0.16176470588235295, 0.25735294117647056, 0.2647058823529412, 0.8676470588235294, 0.7720588235294118, 0.38235294117647056, 0.3014705882352941, 0.22794117647058823, 0.21323529411764705, 0.18382352941176472, 0.20588235294117646, 0.5367647058823529, 0.3897058823529412, 0.35294117647058826, 0.27941176470588236, 0.22058823529411764, 0.27205882352941174, 0.25, 0.19117647058823528, 0.18382352941176472, 0.17647058823529413, 0.3088235294117647, 0.2867647058823529, 0.25735294117647056, 0.25, 0.8676470588235294, 0.875, 0.8161764705882353, 0.3235294117647059, 0.36764705882352944, 0.27205882352941174, 0.8455882352941176, 0.8308823529411765, 0.17647058823529413, 0.18382352941176472, 0.17647058823529413, 0.17647058823529413, 0.16176470588235295, 0.14705882352941177, 0.14705882352941177, 0.13970588235294118, 0.13970588235294118, 0.13970588235294118, 0.13970588235294118, 0.13970588235294118, 0.13970588235294118, 0.13970588235294118, 0.8235294117647058, 0.3235294117647059, 0.13970588235294118, 0.13970588235294118, 0.1323529411764706, 0.1323529411764706, 0.3014705882352941, 0.3014705882352941, 0.1323529411764706, 0.1323529411764706, 0.9191176470588235, 0.9264705882352942, 0.9264705882352942, 0.9264705882352942, 0.9264705882352942, 0.9264705882352942, 0.9191176470588235, 0.1323529411764706, 0.13970588235294118, 0.14705882352941177, 0.13970588235294118, 0.15441176470588236, 0.18382352941176472, 0.17647058823529413, 0.13970588235294118, 0.14705882352941177, 0.14705882352941177, 0.13970588235294118, 0.13970588235294118, 0.1323529411764706, 0.125, 0.1323529411764706, 0.125, 0.11029411764705882, 0.10294117647058823, 0.11764705882352941, 0.11764705882352941, 0.15441176470588236, 0.1323529411764706, 0.4485294117647059, 0.9485294117647058, 0.13970588235294118, 0.13970588235294118, 0.13970588235294118, 0.125, 0.11764705882352941, 0.11764705882352941, 0.125, 0.11764705882352941, 0.125, 0.125, 0.125, 0.125, 0.1323529411764706, 0.125, 0.125, 0.1323529411764706, 0.27941176470588236, 0.25, 0.20588235294117646, 0.20588235294117646, 0.20588235294117646, 0.19852941176470587, 0.18382352941176472, 0.18382352941176472, 0.2426470588235294, 0.9044117647058824, 0.27205882352941174, 0.27941176470588236, 0.27941176470588236, 0.23529411764705882, 0.2426470588235294, 0.1323529411764706, 0.5294117647058824, 0.5441176470588235, 0.6544117647058824, 0.7647058823529411, 0.8235294117647058, 0.9044117647058824, 0.9485294117647058, 0.9411764705882353, 0.8676470588235294, 0.8161764705882353, 0.7132352941176471, 0.6176470588235294, 0.5441176470588235, 0.5147058823529411, 0.15441176470588236, 0.15441176470588236, 0.1323529411764706, 0.1323529411764706, 0.11029411764705882, 0.11029411764705882, 0.11764705882352941, 0.11029411764705882, 0.11029411764705882, 0.11764705882352941, 0.11764705882352941, 0.11764705882352941, 0.11764705882352941, 0.11764705882352941, 0.11764705882352941, 0.11764705882352941, 0.11764705882352941, 0.125, 0.125, 0.125, 0.1323529411764706, 0.125, 0.21323529411764705, 0.3014705882352941, 0.5294117647058824, 0.25, 0.20588235294117646, 0.19852941176470587, 0.18382352941176472, 0.18382352941176472, 0.18382352941176472, 0.1323529411764706, 0.11764705882352941, 0.11764705882352941, 0.11764705882352941, 0.18382352941176472, 0.8455882352941176, 0.9264705882352942, 0.9338235294117647, 0.9338235294117647, 0.9411764705882353, 0.9338235294117647, 0.9338235294117647, 0.9264705882352942, 0.7941176470588235, 0.1323529411764706, 0.13970588235294118, 0.13970588235294118, 0.20588235294117646, 0.19852941176470587, 0.9044117647058824, 0.13970588235294118, 0.1323529411764706, 0.125, 0.9117647058823529, 0.9191176470588235, 0.9191176470588235, 0.8676470588235294, 0.125, 0.125, 0.1323529411764706, 0.1323529411764706, 0.1323529411764706, 0.1323529411764706, 0.13970588235294118, 0.14705882352941177, 0.15441176470588236, 0.2867647058823529, 0.2647058823529412, 0.20588235294117646, 0.21323529411764705, 0.6911764705882353, 0.22794117647058823, 0.22058823529411764, 0.17647058823529413, 0.16911764705882354, 0.16911764705882354, 0.15441176470588236, 0.1323529411764706, 0.7794117647058824, 0.11764705882352941, 0.11764705882352941, 0.125, 0.1323529411764706, 0.13970588235294118, 0.1323529411764706, 0.1323529411764706, 0.1323529411764706, 0.9485294117647058, 0.1323529411764706, 0.1323529411764706, 0.125, 0.125, 0.11764705882352941, 0.11764705882352941, 0.11764705882352941, 0.8970588235294118, 0.9411764705882353, 0.9411764705882353, 0.9411764705882353, 0.9411764705882353, 0.8897058823529411, 0.375, 0.375, 0.38235294117647056, 0.33088235294117646, 0.2867647058823529, 0.8088235294117647, 0.8455882352941176, 0.875, 0.9191176470588235, 0.9485294117647058, 0.9411764705882353, 0.9044117647058824, 0.8676470588235294, 0.8235294117647058, 0.7941176470588235, 0.17647058823529413, 0.19852941176470587, 0.21323529411764705, 0.17647058823529413, 0.7720588235294118, 0.9485294117647058, 0.6764705882352942, 0.16176470588235295, 0.19117647058823528, 0.17647058823529413, 0.16911764705882354, 0.16176470588235295, 0.3382352941176471, 0.19117647058823528, 0.17647058823529413, 0.16911764705882354, 0.15441176470588236, 0.13970588235294118, 0.13970588235294118, 0.13970588235294118, 0.17647058823529413, 0.22794117647058823, 0.20588235294117646, 0.6102941176470589, 0.6102941176470589, 0.5661764705882353, 0.5514705882352942, 0.5073529411764706, 0.45588235294117646, 0.3897058823529412, 0.9264705882352942, 0.9485294117647058, 0.9485294117647058, 0.9338235294117647, 0.8676470588235294, 0.1323529411764706, 0.1323529411764706, 0.1323529411764706, 0.1323529411764706, 0.14705882352941177, 0.16911764705882354, 0.16911764705882354, 0.15441176470588236, 0.6029411764705882, 0.5661764705882353, 0.5661764705882353, 0.9411764705882353, 0.9411764705882353, 0.9411764705882353, 0.3161764705882353, 0.29411764705882354, 0.27205882352941174, 0.25, 0.19117647058823528, 0.16176470588235295, 0.13970588235294118, 0.13970588235294118, 0.14705882352941177, 0.15441176470588236, 0.2426470588235294, 0.16176470588235295, 0.14705882352941177, 0.13970588235294118, 0.13970588235294118, 0.13970588235294118, 0.13970588235294118, 0.22794117647058823, 0.22794117647058823, 0.5, 0.5441176470588235, 0.8161764705882353, 0.8602941176470589, 0.9191176470588235, 0.9411764705882353, 0.9411764705882353, 0.9411764705882353, 0.9411764705882353, 0.9338235294117647, 0.9117647058823529, 0.8455882352941176, 0.7573529411764706, 0.22058823529411764, 0.21323529411764705, 0.19117647058823528, 0.19117647058823528, 0.19117647058823528, 0.41911764705882354, 0.2867647058823529, 0.25, 0.20588235294117646, 0.19117647058823528, 0.27205882352941174, 0.23529411764705882, 0.27205882352941174, 0.8897058823529411, 0.8676470588235294, 0.22058823529411764, 0.20588235294117646, 0.18382352941176472, 0.18382352941176472, 0.18382352941176472, 0.18382352941176472, 0.9411764705882353, 0.9485294117647058, 0.9338235294117647, 0.18382352941176472, 0.8676470588235294, 0.2647058823529412, 0.27941176470588236, 0.27941176470588236, 0.2867647058823529, 0.9264705882352942, 0.2647058823529412, 0.2647058823529412, 0.27205882352941174, 0.27205882352941174, 0.27205882352941174, 0.2867647058823529, 0.29411764705882354, 0.3088235294117647, 0.39705882352941174, 0.45588235294117646, 0.5220588235294118, 0.5294117647058824, 0.8455882352941176], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF459.gap.json b/pfam_gap_rates/DUF459.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..8f484da7f4f62fd95a2500177da0b6a82b0e95d9
--- /dev/null
+++ b/pfam_gap_rates/DUF459.gap.json
@@ -0,0 +1 @@
+{"family": "DUF459", "n_seqs": 128, "length": 307, "gap_rates": [0.9375, 0.921875, 0.90625, 0.8515625, 0.8046875, 0.796875, 0.7890625, 0.734375, 0.71875, 0.6796875, 0.6640625, 0.640625, 0.6328125, 0.5703125, 0.8828125, 0.890625, 0.8984375, 0.921875, 0.9453125, 0.90625, 0.890625, 0.8828125, 0.875, 0.53125, 0.5234375, 0.53125, 0.5234375, 0.515625, 0.5078125, 0.4921875, 0.4765625, 0.4609375, 0.453125, 0.4140625, 0.3828125, 0.34375, 0.3203125, 0.15625, 0.6640625, 0.765625, 0.796875, 0.8515625, 0.8984375, 0.9453125, 0.9453125, 0.9140625, 0.875, 0.8203125, 0.78125, 0.7109375, 0.6328125, 0.078125, 0.078125, 0.078125, 0.0625, 0.0625, 0.0625, 0.0625, 0.0625, 0.0625, 0.0625, 0.0625, 0.0703125, 0.0703125, 0.0625, 0.0703125, 0.0703125, 0.0703125, 0.0625, 0.0703125, 0.078125, 0.0703125, 0.0859375, 0.0859375, 0.0703125, 0.09375, 0.0703125, 0.0703125, 0.0625, 0.0625, 0.0625, 0.0625, 0.0625, 0.078125, 0.0625, 0.0625, 0.0625, 0.0625, 0.0625, 0.0625, 0.0625, 0.078125, 0.078125, 0.0859375, 0.0859375, 0.078125, 0.0625, 0.0625, 0.0625, 0.0625, 0.0625, 0.0625, 0.0625, 0.0625, 0.0703125, 0.0703125, 0.0625, 0.0625, 0.9140625, 0.0859375, 0.0625, 0.0546875, 0.7890625, 0.0546875, 0.0546875, 0.0546875, 0.0546875, 0.0546875, 0.0546875, 0.0546875, 0.0546875, 0.0546875, 0.0546875, 0.0546875, 0.0625, 0.078125, 0.078125, 0.0703125, 0.2578125, 0.171875, 0.1171875, 0.1171875, 0.140625, 0.328125, 0.1171875, 0.0859375, 0.09375, 0.078125, 0.0703125, 0.0625, 0.0625, 0.0625, 0.0625, 0.0625, 0.0625, 0.0625, 0.0625, 0.0625, 0.0625, 0.0625, 0.0625, 0.0625, 0.0625, 0.0625, 0.0625, 0.0625, 0.0625, 0.0625, 0.890625, 0.859375, 0.0625, 0.0625, 0.0625, 0.0625, 0.0703125, 0.078125, 0.0703125, 0.0625, 0.125, 0.125, 0.0625, 0.0625, 0.0625, 0.0625, 0.0703125, 0.0703125, 0.0703125, 0.0703125, 0.0703125, 0.0703125, 0.0703125, 0.0703125, 0.0703125, 0.0703125, 0.0703125, 0.0703125, 0.0703125, 0.0703125, 0.0703125, 0.078125, 0.0703125, 0.078125, 0.0859375, 0.0859375, 0.0859375, 0.078125, 0.1328125, 0.1171875, 0.9453125, 0.1015625, 0.09375, 0.9375, 0.0859375, 0.078125, 0.078125, 0.078125, 0.0859375, 0.109375, 0.1171875, 0.9375, 0.9140625, 0.078125, 0.0859375, 0.1796875, 0.109375, 0.0859375, 0.0859375, 0.0859375, 0.078125, 0.078125, 0.09375, 0.078125, 0.09375, 0.1015625, 0.109375, 0.1015625, 0.078125, 0.078125, 0.1015625, 0.109375, 0.1015625, 0.09375, 0.0859375, 0.0859375, 0.078125, 0.078125, 0.078125, 0.078125, 0.078125, 0.0859375, 0.0859375, 0.078125, 0.078125, 0.078125, 0.09375, 0.0859375, 0.0859375, 0.1796875, 0.1796875, 0.1953125, 0.171875, 0.28125, 0.3359375, 0.3671875, 0.3828125, 0.4140625, 0.421875, 0.4296875, 0.484375, 0.484375, 0.515625, 0.53125, 0.5390625, 0.578125, 0.8203125, 0.5625, 0.5703125, 0.59375, 0.59375, 0.609375, 0.6171875, 0.625, 0.6171875, 0.625, 0.625, 0.9296875, 0.9140625, 0.671875, 0.6796875, 0.6953125, 0.7109375, 0.7265625, 0.7421875, 0.765625, 0.7578125, 0.765625, 0.796875, 0.7734375, 0.8828125, 0.9140625, 0.9296875, 0.921875, 0.8828125, 0.875, 0.7890625, 0.78125, 0.78125, 0.78125, 0.8125, 0.8203125, 0.8203125, 0.8203125, 0.828125, 0.8359375, 0.8359375, 0.8359375, 0.8671875], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF465.gap.json b/pfam_gap_rates/DUF465.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d65e00e7bce863adcbb5a120b73800d1980a2486
--- /dev/null
+++ b/pfam_gap_rates/DUF465.gap.json
@@ -0,0 +1 @@
+{"family": "DUF465", "n_seqs": 696, "length": 50, "gap_rates": [0.48563218390804597, 0.24856321839080459, 0.07614942528735633, 0.04310344827586207, 0.020114942528735632, 0.014367816091954023, 0.010057471264367816, 0.008620689655172414, 0.007183908045977011, 0.005747126436781609, 0.0028735632183908046, 0.0028735632183908046, 0.0028735632183908046, 0.0028735632183908046, 0.0028735632183908046, 0.0028735632183908046, 0.0028735632183908046, 0.0014367816091954023, 0.0014367816091954023, 0.0014367816091954023, 0.0014367816091954023, 0.0, 0.041666666666666664, 0.603448275862069, 0.9310344827586207, 0.9238505747126436, 0.022988505747126436, 0.004310344827586207, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0014367816091954023, 0.0028735632183908046, 0.011494252873563218, 0.0028735632183908046, 0.0028735632183908046, 0.0028735632183908046, 0.004310344827586207, 0.008620689655172414, 0.011494252873563218, 0.01293103448275862, 0.014367816091954023, 0.027298850574712645, 0.07327586206896551, 0.14942528735632185, 0.5431034482758621], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF475.gap.json b/pfam_gap_rates/DUF475.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..33deea9fc2c9c064057f5efa21604bb7d9362eca
--- /dev/null
+++ b/pfam_gap_rates/DUF475.gap.json
@@ -0,0 +1 @@
+{"family": "DUF475", "n_seqs": 239, "length": 339, "gap_rates": [0.05439330543933055, 0.0502092050209205, 0.04602510460251046, 0.04602510460251046, 0.04602510460251046, 0.04602510460251046, 0.04184100418410042, 0.04184100418410042, 0.04184100418410042, 0.04184100418410042, 0.04184100418410042, 0.04184100418410042, 0.04184100418410042, 0.04184100418410042, 0.04184100418410042, 0.04184100418410042, 0.04184100418410042, 0.04184100418410042, 0.04184100418410042, 0.04184100418410042, 0.04184100418410042, 0.04184100418410042, 0.04184100418410042, 0.04184100418410042, 0.03765690376569038, 0.03765690376569038, 0.03347280334728033, 0.03347280334728033, 0.03347280334728033, 0.03347280334728033, 0.03347280334728033, 0.03347280334728033, 0.03347280334728033, 0.03347280334728033, 0.03347280334728033, 0.03347280334728033, 0.03347280334728033, 0.03347280334728033, 0.029288702928870293, 0.029288702928870293, 0.029288702928870293, 0.029288702928870293, 0.029288702928870293, 0.029288702928870293, 0.029288702928870293, 0.029288702928870293, 0.03347280334728033, 0.8410041841004184, 0.03765690376569038, 0.03347280334728033, 0.03347280334728033, 0.03347280334728033, 0.03347280334728033, 0.03347280334728033, 0.03347280334728033, 0.03765690376569038, 0.03347280334728033, 0.03765690376569038, 0.03765690376569038, 0.03347280334728033, 0.03347280334728033, 0.03347280334728033, 0.8786610878661087, 0.8786610878661087, 0.9372384937238494, 0.9414225941422594, 0.9414225941422594, 0.9414225941422594, 0.9414225941422594, 0.9414225941422594, 0.891213389121339, 0.8786610878661087, 0.8786610878661087, 0.03347280334728033, 0.03347280334728033, 0.03765690376569038, 0.03765690376569038, 0.03765690376569038, 0.03765690376569038, 0.03765690376569038, 0.03765690376569038, 0.03765690376569038, 0.03765690376569038, 0.03765690376569038, 0.03765690376569038, 0.03765690376569038, 0.03765690376569038, 0.03765690376569038, 0.03765690376569038, 0.03765690376569038, 0.03765690376569038, 0.03347280334728033, 0.03347280334728033, 0.03347280334728033, 0.03347280334728033, 0.03347280334728033, 0.03347280334728033, 0.029288702928870293, 0.029288702928870293, 0.029288702928870293, 0.029288702928870293, 0.029288702928870293, 0.029288702928870293, 0.029288702928870293, 0.029288702928870293, 0.029288702928870293, 0.029288702928870293, 0.029288702928870293, 0.03347280334728033, 0.5606694560669456, 0.09623430962343096, 0.03347280334728033, 0.03347280334728033, 0.03347280334728033, 0.08786610878661087, 0.11297071129707113, 0.06276150627615062, 0.03347280334728033, 0.03347280334728033, 0.03765690376569038, 0.04602510460251046, 0.03347280334728033, 0.03765690376569038, 0.05439330543933055, 0.0502092050209205, 0.03765690376569038, 0.04184100418410042, 0.04184100418410042, 0.05439330543933055, 0.08786610878661087, 0.24686192468619247, 0.18410041841004185, 0.08786610878661087, 0.058577405857740586, 0.058577405857740586, 0.0502092050209205, 0.06276150627615062, 0.1589958158995816, 0.08368200836820083, 0.07531380753138076, 0.07112970711297072, 0.06276150627615062, 0.09623430962343096, 0.07531380753138076, 0.0502092050209205, 0.0502092050209205, 0.03765690376569038, 0.19665271966527198, 0.17154811715481172, 0.14225941422594143, 0.2510460251046025, 0.6108786610878661, 0.4351464435146444, 0.14644351464435146, 0.8828451882845189, 0.8828451882845189, 0.9037656903765691, 0.9163179916317992, 0.9079497907949791, 0.891213389121339, 0.8828451882845189, 0.8828451882845189, 0.05439330543933055, 0.03347280334728033, 0.03347280334728033, 0.03347280334728033, 0.03347280334728033, 0.03347280334728033, 0.03347280334728033, 0.03347280334728033, 0.03347280334728033, 0.03347280334728033, 0.03347280334728033, 0.03347280334728033, 0.03347280334728033, 0.03347280334728033, 0.03347280334728033, 0.03347280334728033, 0.03347280334728033, 0.03347280334728033, 0.03347280334728033, 0.03347280334728033, 0.03347280334728033, 0.03347280334728033, 0.03347280334728033, 0.03347280334728033, 0.03347280334728033, 0.08368200836820083, 0.13389121338912133, 0.7573221757322176, 0.7656903765690377, 0.7698744769874477, 0.7824267782426778, 0.7949790794979079, 0.8117154811715481, 0.8242677824267782, 0.8619246861924686, 0.9330543933054394, 0.899581589958159, 0.8368200836820083, 0.8158995815899581, 0.803347280334728, 0.7866108786610879, 0.7740585774058577, 0.7656903765690377, 0.7573221757322176, 0.7573221757322176, 0.4560669456066946, 0.694560669456067, 0.5941422594142259, 0.5606694560669456, 0.2510460251046025, 0.803347280334728, 0.8744769874476988, 0.8242677824267782, 0.7698744769874477, 0.1506276150627615, 0.12133891213389121, 0.10460251046025104, 0.10460251046025104, 0.07112970711297072, 0.03347280334728033, 0.03765690376569038, 0.03765690376569038, 0.03347280334728033, 0.03347280334728033, 0.03347280334728033, 0.03347280334728033, 0.029288702928870293, 0.029288702928870293, 0.029288702928870293, 0.029288702928870293, 0.029288702928870293, 0.02510460251046025, 0.02510460251046025, 0.02510460251046025, 0.02510460251046025, 0.02510460251046025, 0.02510460251046025, 0.02510460251046025, 0.02510460251046025, 0.02510460251046025, 0.02510460251046025, 0.02510460251046025, 0.02510460251046025, 0.02510460251046025, 0.029288702928870293, 0.029288702928870293, 0.029288702928870293, 0.029288702928870293, 0.029288702928870293, 0.029288702928870293, 0.029288702928870293, 0.029288702928870293, 0.029288702928870293, 0.029288702928870293, 0.03347280334728033, 0.03347280334728033, 0.03347280334728033, 0.03347280334728033, 0.03347280334728033, 0.03347280334728033, 0.9037656903765691, 0.029288702928870293, 0.029288702928870293, 0.029288702928870293, 0.029288702928870293, 0.029288702928870293, 0.029288702928870293, 0.029288702928870293, 0.029288702928870293, 0.029288702928870293, 0.029288702928870293, 0.029288702928870293, 0.029288702928870293, 0.058577405857740586, 0.07112970711297072, 0.19665271966527198, 0.23430962343096234, 0.08368200836820083, 0.03347280334728033, 0.02510460251046025, 0.02510460251046025, 0.02510460251046025, 0.02510460251046025, 0.02510460251046025, 0.02510460251046025, 0.02510460251046025, 0.02510460251046025, 0.02510460251046025, 0.02510460251046025, 0.02510460251046025, 0.02510460251046025, 0.02510460251046025, 0.02510460251046025, 0.02510460251046025, 0.02510460251046025, 0.02510460251046025, 0.02510460251046025, 0.02510460251046025, 0.02510460251046025, 0.02510460251046025, 0.02510460251046025, 0.02510460251046025, 0.02510460251046025, 0.029288702928870293, 0.03765690376569038, 0.03765690376569038, 0.6694560669456067, 0.03765690376569038, 0.04184100418410042, 0.04184100418410042, 0.04184100418410042, 0.04602510460251046, 0.04602510460251046, 0.04602510460251046, 0.04602510460251046, 0.04602510460251046, 0.04602510460251046, 0.04602510460251046, 0.0502092050209205, 0.0502092050209205, 0.0502092050209205, 0.0502092050209205, 0.0502092050209205, 0.0502092050209205, 0.0502092050209205, 0.05439330543933055, 0.05439330543933055, 0.058577405857740586, 0.06276150627615062, 0.06694560669456066, 0.13389121338912133, 0.18828451882845187, 0.21338912133891214, 0.26778242677824265, 0.3054393305439331, 0.3807531380753138, 0.9163179916317992], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4758.gap.json b/pfam_gap_rates/DUF4758.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..4d9b1e541083d20f765cd4714684f55eb87a5eeb
--- /dev/null
+++ b/pfam_gap_rates/DUF4758.gap.json
@@ -0,0 +1 @@
+{"family": "DUF4758", "n_seqs": 105, "length": 182, "gap_rates": [0.7523809523809524, 0.5428571428571428, 0.5142857142857142, 0.5047619047619047, 0.49523809523809526, 0.49523809523809526, 0.49523809523809526, 0.49523809523809526, 0.49523809523809526, 0.49523809523809526, 0.49523809523809526, 0.49523809523809526, 0.49523809523809526, 0.49523809523809526, 0.49523809523809526, 0.49523809523809526, 0.49523809523809526, 0.49523809523809526, 0.47619047619047616, 0.47619047619047616, 0.45714285714285713, 0.42857142857142855, 0.42857142857142855, 0.42857142857142855, 0.42857142857142855, 0.42857142857142855, 0.42857142857142855, 0.4380952380952381, 0.4380952380952381, 0.42857142857142855, 0.42857142857142855, 0.42857142857142855, 0.42857142857142855, 0.42857142857142855, 0.42857142857142855, 0.41904761904761906, 0.780952380952381, 0.8, 0.8095238095238095, 0.8095238095238095, 0.8285714285714286, 0.8476190476190476, 0.8666666666666667, 0.8857142857142857, 0.9142857142857143, 0.9333333333333333, 0.9333333333333333, 0.9333333333333333, 0.9333333333333333, 0.9428571428571428, 0.9333333333333333, 0.9333333333333333, 0.9333333333333333, 0.9333333333333333, 0.9238095238095239, 0.9047619047619048, 0.8666666666666667, 0.8571428571428571, 0.8285714285714286, 0.819047619047619, 0.8095238095238095, 0.8095238095238095, 0.780952380952381, 0.7714285714285715, 0.5428571428571428, 0.6857142857142857, 0.6952380952380952, 0.638095238095238, 0.638095238095238, 0.6476190476190476, 0.6476190476190476, 0.6571428571428571, 0.6476190476190476, 0.6285714285714286, 0.6190476190476191, 0.6095238095238096, 0.6095238095238096, 0.5904761904761905, 0.6285714285714286, 0.5904761904761905, 0.8857142857142857, 0.9047619047619048, 0.9047619047619048, 0.9047619047619048, 0.9238095238095239, 0.9428571428571428, 0.9428571428571428, 0.9238095238095239, 0.9047619047619048, 0.9047619047619048, 0.8952380952380953, 0.8857142857142857, 0.7238095238095238, 0.6952380952380952, 0.6571428571428571, 0.6476190476190476, 0.6571428571428571, 0.6095238095238096, 0.580952380952381, 0.5619047619047619, 0.5714285714285714, 0.5714285714285714, 0.580952380952381, 0.6095238095238096, 0.6095238095238096, 0.6190476190476191, 0.6190476190476191, 0.6285714285714286, 0.6571428571428571, 0.6857142857142857, 0.9142857142857143, 0.9333333333333333, 0.8857142857142857, 0.7333333333333333, 0.7142857142857143, 0.7047619047619048, 0.6761904761904762, 0.6666666666666666, 0.6857142857142857, 0.6571428571428571, 0.9238095238095239, 0.9428571428571428, 0.9428571428571428, 0.9333333333333333, 0.9142857142857143, 0.580952380952381, 0.5619047619047619, 0.5428571428571428, 0.5047619047619047, 0.4666666666666667, 0.4380952380952381, 0.41904761904761906, 0.4095238095238095, 0.4095238095238095, 0.4095238095238095, 0.4, 0.3904761904761905, 0.3523809523809524, 0.3523809523809524, 0.3523809523809524, 0.3523809523809524, 0.3523809523809524, 0.3523809523809524, 0.3523809523809524, 0.3523809523809524, 0.3523809523809524, 0.3619047619047619, 0.3619047619047619, 0.3619047619047619, 0.37142857142857144, 0.37142857142857144, 0.37142857142857144, 0.37142857142857144, 0.37142857142857144, 0.37142857142857144, 0.37142857142857144, 0.37142857142857144, 0.37142857142857144, 0.37142857142857144, 0.37142857142857144, 0.37142857142857144, 0.38095238095238093, 0.38095238095238093, 0.38095238095238093, 0.38095238095238093, 0.38095238095238093, 0.38095238095238093, 0.38095238095238093, 0.38095238095238093, 0.38095238095238093, 0.38095238095238093, 0.38095238095238093, 0.38095238095238093, 0.38095238095238093, 0.38095238095238093, 0.38095238095238093, 0.38095238095238093, 0.38095238095238093, 0.38095238095238093, 0.38095238095238093, 0.38095238095238093, 0.6190476190476191], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4773.gap.json b/pfam_gap_rates/DUF4773.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a37ee25a171a6f03dc8a32432af7feeeac106fef
--- /dev/null
+++ b/pfam_gap_rates/DUF4773.gap.json
@@ -0,0 +1 @@
+{"family": "DUF4773", "n_seqs": 102, "length": 127, "gap_rates": [0.39215686274509803, 0.17647058823529413, 0.17647058823529413, 0.17647058823529413, 0.17647058823529413, 0.16666666666666666, 0.16666666666666666, 0.16666666666666666, 0.16666666666666666, 0.16666666666666666, 0.16666666666666666, 0.16666666666666666, 0.16666666666666666, 0.16666666666666666, 0.16666666666666666, 0.19607843137254902, 0.18627450980392157, 0.17647058823529413, 0.17647058823529413, 0.23529411764705882, 0.30392156862745096, 0.8823529411764706, 0.2647058823529412, 0.16666666666666666, 0.0784313725490196, 0.0784313725490196, 0.058823529411764705, 0.049019607843137254, 0.049019607843137254, 0.049019607843137254, 0.049019607843137254, 0.049019607843137254, 0.049019607843137254, 0.11764705882352941, 0.12745098039215685, 0.06862745098039216, 0.058823529411764705, 0.20588235294117646, 0.058823529411764705, 0.058823529411764705, 0.058823529411764705, 0.049019607843137254, 0.049019607843137254, 0.0392156862745098, 0.0392156862745098, 0.0392156862745098, 0.0392156862745098, 0.0392156862745098, 0.0392156862745098, 0.0392156862745098, 0.0392156862745098, 0.049019607843137254, 0.058823529411764705, 0.08823529411764706, 0.0392156862745098, 0.029411764705882353, 0.00980392156862745, 0.0392156862745098, 0.029411764705882353, 0.029411764705882353, 0.0392156862745098, 0.058823529411764705, 0.0392156862745098, 0.0392156862745098, 0.0392156862745098, 0.8823529411764706, 0.8627450980392157, 0.0392156862745098, 0.0392156862745098, 0.029411764705882353, 0.8431372549019608, 0.9215686274509803, 0.8823529411764706, 0.5490196078431373, 0.0392156862745098, 0.058823529411764705, 0.058823529411764705, 0.0392156862745098, 0.029411764705882353, 0.029411764705882353, 0.029411764705882353, 0.029411764705882353, 0.029411764705882353, 0.029411764705882353, 0.0392156862745098, 0.029411764705882353, 0.029411764705882353, 0.029411764705882353, 0.029411764705882353, 0.9019607843137255, 0.8725490196078431, 0.029411764705882353, 0.029411764705882353, 0.9215686274509803, 0.029411764705882353, 0.029411764705882353, 0.029411764705882353, 0.029411764705882353, 0.029411764705882353, 0.029411764705882353, 0.029411764705882353, 0.029411764705882353, 0.029411764705882353, 0.029411764705882353, 0.029411764705882353, 0.0392156862745098, 0.049019607843137254, 0.0392156862745098, 0.058823529411764705, 0.06862745098039216, 0.058823529411764705, 0.049019607843137254, 0.058823529411764705, 0.049019607843137254, 0.058823529411764705, 0.06862745098039216, 0.06862745098039216, 0.06862745098039216, 0.06862745098039216, 0.06862745098039216, 0.06862745098039216, 0.0784313725490196, 0.09803921568627451, 0.2647058823529412, 0.3137254901960784, 0.38235294117647056, 0.39215686274509803], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4817.gap.json b/pfam_gap_rates/DUF4817.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..9529b619154de3c40438125deec0f95b5efa44c6
--- /dev/null
+++ b/pfam_gap_rates/DUF4817.gap.json
@@ -0,0 +1 @@
+{"family": "DUF4817", "n_seqs": 240, "length": 57, "gap_rates": [0.6458333333333334, 0.5958333333333333, 0.39166666666666666, 0.2916666666666667, 0.25416666666666665, 0.15, 0.13333333333333333, 0.10833333333333334, 0.10416666666666667, 0.0875, 0.07916666666666666, 0.075, 0.06666666666666667, 0.0625, 0.0625, 0.058333333333333334, 0.17916666666666667, 0.04583333333333333, 0.041666666666666664, 0.0375, 0.03333333333333333, 0.025, 0.016666666666666666, 0.0125, 0.004166666666666667, 0.0, 0.0, 0.0, 0.004166666666666667, 0.004166666666666667, 0.004166666666666667, 0.9291666666666667, 0.0875, 0.016666666666666666, 0.008333333333333333, 0.004166666666666667, 0.025, 0.8708333333333333, 0.004166666666666667, 0.004166666666666667, 0.004166666666666667, 0.008333333333333333, 0.0125, 0.020833333333333332, 0.020833333333333332, 0.029166666666666667, 0.04583333333333333, 0.04583333333333333, 0.05, 0.07916666666666666, 0.08333333333333333, 0.09583333333333334, 0.10833333333333334, 0.125, 0.1875, 0.2625, 0.8333333333333334], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4867.gap.json b/pfam_gap_rates/DUF4867.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..9360b5b9cc508f21367934a0e2f52f3d7146e982
--- /dev/null
+++ b/pfam_gap_rates/DUF4867.gap.json
@@ -0,0 +1 @@
+{"family": "DUF4867", "n_seqs": 117, "length": 213, "gap_rates": [0.3333333333333333, 0.17094017094017094, 0.11965811965811966, 0.09401709401709402, 0.08547008547008547, 0.08547008547008547, 0.08547008547008547, 0.08547008547008547, 0.08547008547008547, 0.08547008547008547, 0.08547008547008547, 0.08547008547008547, 0.08547008547008547, 0.08547008547008547, 0.08547008547008547, 0.08547008547008547, 0.1282051282051282, 0.09401709401709402, 0.10256410256410256, 0.08547008547008547, 0.08547008547008547, 0.08547008547008547, 0.9401709401709402, 0.9401709401709402, 0.08547008547008547, 0.08547008547008547, 0.08547008547008547, 0.08547008547008547, 0.08547008547008547, 0.08547008547008547, 0.6153846153846154, 0.09401709401709402, 0.08547008547008547, 0.08547008547008547, 0.08547008547008547, 0.08547008547008547, 0.08547008547008547, 0.08547008547008547, 0.5555555555555556, 0.08547008547008547, 0.08547008547008547, 0.08547008547008547, 0.08547008547008547, 0.08547008547008547, 0.08547008547008547, 0.08547008547008547, 0.08547008547008547, 0.08547008547008547, 0.08547008547008547, 0.08547008547008547, 0.08547008547008547, 0.08547008547008547, 0.09401709401709402, 0.08547008547008547, 0.09401709401709402, 0.07692307692307693, 0.07692307692307693, 0.08547008547008547, 0.08547008547008547, 0.08547008547008547, 0.09401709401709402, 0.07692307692307693, 0.07692307692307693, 0.07692307692307693, 0.07692307692307693, 0.07692307692307693, 0.05982905982905983, 0.05982905982905983, 0.05982905982905983, 0.05982905982905983, 0.05982905982905983, 0.05982905982905983, 0.05982905982905983, 0.05982905982905983, 0.05982905982905983, 0.05982905982905983, 0.05982905982905983, 0.06837606837606838, 0.06837606837606838, 0.05128205128205128, 0.042735042735042736, 0.03418803418803419, 0.02564102564102564, 0.02564102564102564, 0.03418803418803419, 0.02564102564102564, 0.02564102564102564, 0.02564102564102564, 0.02564102564102564, 0.02564102564102564, 0.02564102564102564, 0.02564102564102564, 0.02564102564102564, 0.02564102564102564, 0.02564102564102564, 0.02564102564102564, 0.02564102564102564, 0.02564102564102564, 0.02564102564102564, 0.02564102564102564, 0.02564102564102564, 0.017094017094017096, 0.017094017094017096, 0.017094017094017096, 0.017094017094017096, 0.017094017094017096, 0.017094017094017096, 0.042735042735042736, 0.05128205128205128, 0.05128205128205128, 0.9401709401709402, 0.5128205128205128, 0.02564102564102564, 0.017094017094017096, 0.017094017094017096, 0.017094017094017096, 0.017094017094017096, 0.017094017094017096, 0.017094017094017096, 0.017094017094017096, 0.017094017094017096, 0.017094017094017096, 0.017094017094017096, 0.017094017094017096, 0.017094017094017096, 0.017094017094017096, 0.017094017094017096, 0.017094017094017096, 0.017094017094017096, 0.017094017094017096, 0.017094017094017096, 0.017094017094017096, 0.017094017094017096, 0.017094017094017096, 0.017094017094017096, 0.017094017094017096, 0.017094017094017096, 0.017094017094017096, 0.017094017094017096, 0.017094017094017096, 0.017094017094017096, 0.017094017094017096, 0.017094017094017096, 0.017094017094017096, 0.017094017094017096, 0.017094017094017096, 0.008547008547008548, 0.7777777777777778, 0.02564102564102564, 0.008547008547008548, 0.008547008547008548, 0.008547008547008548, 0.008547008547008548, 0.008547008547008548, 0.008547008547008548, 0.008547008547008548, 0.008547008547008548, 0.008547008547008548, 0.008547008547008548, 0.008547008547008548, 0.008547008547008548, 0.008547008547008548, 0.008547008547008548, 0.017094017094017096, 0.03418803418803419, 0.042735042735042736, 0.9145299145299145, 0.9487179487179487, 0.9316239316239316, 0.8034188034188035, 0.05128205128205128, 0.23076923076923078, 0.1794871794871795, 0.11965811965811966, 0.09401709401709402, 0.06837606837606838, 0.05982905982905983, 0.05982905982905983, 0.05982905982905983, 0.05982905982905983, 0.05982905982905983, 0.05982905982905983, 0.05982905982905983, 0.05982905982905983, 0.05982905982905983, 0.05982905982905983, 0.05982905982905983, 0.05982905982905983, 0.05982905982905983, 0.05982905982905983, 0.05982905982905983, 0.05982905982905983, 0.05982905982905983, 0.05982905982905983, 0.05982905982905983, 0.05982905982905983, 0.05982905982905983, 0.7777777777777778, 0.05982905982905983, 0.41025641025641024, 0.28205128205128205, 0.05982905982905983, 0.05982905982905983, 0.05982905982905983, 0.05982905982905983, 0.05982905982905983, 0.05982905982905983, 0.05982905982905983, 0.05982905982905983, 0.05982905982905983, 0.05982905982905983, 0.10256410256410256, 0.2905982905982906], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4878.gap.json b/pfam_gap_rates/DUF4878.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..01e504e92a1c26159140a7fe809af62776f4c60b
--- /dev/null
+++ b/pfam_gap_rates/DUF4878.gap.json
@@ -0,0 +1 @@
+{"family": "DUF4878", "n_seqs": 117, "length": 120, "gap_rates": [0.8547008547008547, 0.4700854700854701, 0.4017094017094017, 0.4017094017094017, 0.29914529914529914, 0.27350427350427353, 0.47863247863247865, 0.8803418803418803, 0.13675213675213677, 0.11965811965811966, 0.1111111111111111, 0.07692307692307693, 0.06837606837606838, 0.05982905982905983, 0.05982905982905983, 0.05128205128205128, 0.05128205128205128, 0.05128205128205128, 0.05128205128205128, 0.05128205128205128, 0.05128205128205128, 0.042735042735042736, 0.042735042735042736, 0.042735042735042736, 0.042735042735042736, 0.042735042735042736, 0.05128205128205128, 0.042735042735042736, 0.042735042735042736, 0.042735042735042736, 0.05128205128205128, 0.042735042735042736, 0.05128205128205128, 0.05982905982905983, 0.05128205128205128, 0.05128205128205128, 0.042735042735042736, 0.05128205128205128, 0.05982905982905983, 0.05982905982905983, 0.05128205128205128, 0.03418803418803419, 0.03418803418803419, 0.03418803418803419, 0.03418803418803419, 0.042735042735042736, 0.4188034188034188, 0.36752136752136755, 0.3076923076923077, 0.21367521367521367, 0.20512820512820512, 0.19658119658119658, 0.24786324786324787, 0.452991452991453, 0.42735042735042733, 0.358974358974359, 0.29914529914529914, 0.8717948717948718, 0.9316239316239316, 0.6837606837606838, 0.1623931623931624, 0.1111111111111111, 0.08547008547008547, 0.07692307692307693, 0.05128205128205128, 0.042735042735042736, 0.05982905982905983, 0.05982905982905983, 0.05128205128205128, 0.042735042735042736, 0.05128205128205128, 0.23076923076923078, 0.05982905982905983, 0.05128205128205128, 0.042735042735042736, 0.042735042735042736, 0.042735042735042736, 0.05128205128205128, 0.05128205128205128, 0.05128205128205128, 0.042735042735042736, 0.05128205128205128, 0.042735042735042736, 0.05982905982905983, 0.7777777777777778, 0.5726495726495726, 0.10256410256410256, 0.08547008547008547, 0.05128205128205128, 0.05982905982905983, 0.05982905982905983, 0.05128205128205128, 0.1452991452991453, 0.10256410256410256, 0.08547008547008547, 0.08547008547008547, 0.08547008547008547, 0.9487179487179487, 0.10256410256410256, 0.1452991452991453, 0.1623931623931624, 0.17094017094017094, 0.1794871794871795, 0.18803418803418803, 0.19658119658119658, 0.19658119658119658, 0.2222222222222222, 0.27350427350427353, 0.28205128205128205, 0.27350427350427353, 0.2564102564102564, 0.9401709401709402, 0.24786324786324787, 0.24786324786324787, 0.24786324786324787, 0.2564102564102564, 0.2564102564102564, 0.28205128205128205, 0.3333333333333333, 0.7863247863247863], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4880.gap.json b/pfam_gap_rates/DUF4880.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..6c5fb8e61b54d5478d978d90634ea4ceb73c689b
--- /dev/null
+++ b/pfam_gap_rates/DUF4880.gap.json
@@ -0,0 +1 @@
+{"family": "DUF4880", "n_seqs": 408, "length": 43, "gap_rates": [0.3333333333333333, 0.10049019607843138, 0.0392156862745098, 0.03676470588235294, 0.031862745098039214, 0.02696078431372549, 0.02696078431372549, 0.022058823529411766, 0.022058823529411766, 0.01715686274509804, 0.014705882352941176, 0.012254901960784314, 0.13725490196078433, 0.05392156862745098, 0.031862745098039214, 0.012254901960784314, 0.022058823529411766, 0.01715686274509804, 0.0024509803921568627, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.024509803921568627, 0.0, 0.004901960784313725, 0.0, 0.0, 0.0, 0.0, 0.0024509803921568627, 0.007352941176470588, 0.007352941176470588, 0.01715686274509804, 0.03431372549019608, 0.061274509803921566, 0.17892156862745098, 0.35049019607843135, 0.6519607843137255], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4915.gap.json b/pfam_gap_rates/DUF4915.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e8cdf6cf199d8ac822fc1045f622d6d22c6786ff
--- /dev/null
+++ b/pfam_gap_rates/DUF4915.gap.json
@@ -0,0 +1 @@
+{"family": "DUF4915", "n_seqs": 106, "length": 330, "gap_rates": [0.8867924528301887, 0.42452830188679247, 0.22641509433962265, 0.20754716981132076, 0.20754716981132076, 0.18867924528301888, 0.18867924528301888, 0.18867924528301888, 0.18867924528301888, 0.18867924528301888, 0.18867924528301888, 0.18867924528301888, 0.18867924528301888, 0.1792452830188679, 0.1792452830188679, 0.1792452830188679, 0.1792452830188679, 0.1792452830188679, 0.1792452830188679, 0.1792452830188679, 0.1792452830188679, 0.1792452830188679, 0.18867924528301888, 0.1792452830188679, 0.16981132075471697, 0.16981132075471697, 0.16981132075471697, 0.16981132075471697, 0.16981132075471697, 0.16981132075471697, 0.16037735849056603, 0.16037735849056603, 0.9433962264150944, 0.42452830188679247, 0.16037735849056603, 0.16037735849056603, 0.16037735849056603, 0.16037735849056603, 0.16037735849056603, 0.16037735849056603, 0.16037735849056603, 0.16037735849056603, 0.16037735849056603, 0.16037735849056603, 0.16037735849056603, 0.16037735849056603, 0.16037735849056603, 0.16037735849056603, 0.16037735849056603, 0.16037735849056603, 0.16037735849056603, 0.16037735849056603, 0.16037735849056603, 0.16037735849056603, 0.9245283018867925, 0.8679245283018868, 0.16981132075471697, 0.16981132075471697, 0.16981132075471697, 0.16981132075471697, 0.16981132075471697, 0.16981132075471697, 0.16981132075471697, 0.16981132075471697, 0.16981132075471697, 0.16981132075471697, 0.16981132075471697, 0.16981132075471697, 0.14150943396226415, 0.14150943396226415, 0.14150943396226415, 0.14150943396226415, 0.5943396226415094, 0.5943396226415094, 0.1320754716981132, 0.1792452830188679, 0.16037735849056603, 0.14150943396226415, 0.1509433962264151, 0.1509433962264151, 0.1509433962264151, 0.14150943396226415, 0.9150943396226415, 0.5471698113207547, 0.1509433962264151, 0.1509433962264151, 0.1509433962264151, 0.1509433962264151, 0.1509433962264151, 0.1509433962264151, 0.1509433962264151, 0.1509433962264151, 0.1509433962264151, 0.1509433962264151, 0.1509433962264151, 0.1509433962264151, 0.1509433962264151, 0.14150943396226415, 0.14150943396226415, 0.14150943396226415, 0.14150943396226415, 0.11320754716981132, 0.11320754716981132, 0.11320754716981132, 0.11320754716981132, 0.11320754716981132, 0.11320754716981132, 0.11320754716981132, 0.9339622641509434, 0.9433962264150944, 0.9339622641509434, 0.9339622641509434, 0.11320754716981132, 0.1320754716981132, 0.12264150943396226, 0.4811320754716981, 0.11320754716981132, 0.11320754716981132, 0.10377358490566038, 0.10377358490566038, 0.10377358490566038, 0.10377358490566038, 0.10377358490566038, 0.10377358490566038, 0.10377358490566038, 0.10377358490566038, 0.10377358490566038, 0.10377358490566038, 0.10377358490566038, 0.10377358490566038, 0.10377358490566038, 0.10377358490566038, 0.10377358490566038, 0.10377358490566038, 0.10377358490566038, 0.10377358490566038, 0.11320754716981132, 0.10377358490566038, 0.10377358490566038, 0.10377358490566038, 0.10377358490566038, 0.10377358490566038, 0.11320754716981132, 0.11320754716981132, 0.1320754716981132, 0.1509433962264151, 0.1509433962264151, 0.14150943396226415, 0.1320754716981132, 0.12264150943396226, 0.11320754716981132, 0.11320754716981132, 0.11320754716981132, 0.11320754716981132, 0.11320754716981132, 0.11320754716981132, 0.11320754716981132, 0.11320754716981132, 0.11320754716981132, 0.11320754716981132, 0.11320754716981132, 0.11320754716981132, 0.11320754716981132, 0.11320754716981132, 0.10377358490566038, 0.10377358490566038, 0.10377358490566038, 0.1320754716981132, 0.11320754716981132, 0.10377358490566038, 0.10377358490566038, 0.10377358490566038, 0.10377358490566038, 0.10377358490566038, 0.10377358490566038, 0.10377358490566038, 0.10377358490566038, 0.10377358490566038, 0.1320754716981132, 0.12264150943396226, 0.12264150943396226, 0.10377358490566038, 0.10377358490566038, 0.09433962264150944, 0.10377358490566038, 0.10377358490566038, 0.10377358490566038, 0.10377358490566038, 0.10377358490566038, 0.09433962264150944, 0.09433962264150944, 0.09433962264150944, 0.09433962264150944, 0.09433962264150944, 0.09433962264150944, 0.09433962264150944, 0.08490566037735849, 0.08490566037735849, 0.08490566037735849, 0.08490566037735849, 0.09433962264150944, 0.09433962264150944, 0.09433962264150944, 0.09433962264150944, 0.09433962264150944, 0.09433962264150944, 0.09433962264150944, 0.09433962264150944, 0.09433962264150944, 0.09433962264150944, 0.09433962264150944, 0.10377358490566038, 0.10377358490566038, 0.10377358490566038, 0.10377358490566038, 0.10377358490566038, 0.10377358490566038, 0.10377358490566038, 0.10377358490566038, 0.10377358490566038, 0.10377358490566038, 0.10377358490566038, 0.10377358490566038, 0.10377358490566038, 0.10377358490566038, 0.10377358490566038, 0.11320754716981132, 0.12264150943396226, 0.12264150943396226, 0.11320754716981132, 0.10377358490566038, 0.10377358490566038, 0.29245283018867924, 0.27358490566037735, 0.1320754716981132, 0.12264150943396226, 0.12264150943396226, 0.10377358490566038, 0.11320754716981132, 0.11320754716981132, 0.10377358490566038, 0.10377358490566038, 0.10377358490566038, 0.10377358490566038, 0.10377358490566038, 0.10377358490566038, 0.10377358490566038, 0.10377358490566038, 0.10377358490566038, 0.10377358490566038, 0.09433962264150944, 0.09433962264150944, 0.09433962264150944, 0.09433962264150944, 0.09433962264150944, 0.09433962264150944, 0.09433962264150944, 0.09433962264150944, 0.08490566037735849, 0.08490566037735849, 0.08490566037735849, 0.08490566037735849, 0.08490566037735849, 0.08490566037735849, 0.08490566037735849, 0.08490566037735849, 0.8773584905660378, 0.330188679245283, 0.1320754716981132, 0.14150943396226415, 0.14150943396226415, 0.1320754716981132, 0.12264150943396226, 0.11320754716981132, 0.11320754716981132, 0.11320754716981132, 0.11320754716981132, 0.11320754716981132, 0.11320754716981132, 0.14150943396226415, 0.16981132075471697, 0.2358490566037736, 0.16037735849056603, 0.11320754716981132, 0.11320754716981132, 0.5471698113207547, 0.5566037735849056, 0.5471698113207547, 0.5283018867924528, 0.10377358490566038, 0.10377358490566038, 0.09433962264150944, 0.09433962264150944, 0.09433962264150944, 0.09433962264150944, 0.09433962264150944, 0.10377358490566038, 0.09433962264150944, 0.09433962264150944, 0.10377358490566038, 0.10377358490566038, 0.09433962264150944, 0.10377358490566038, 0.10377358490566038, 0.10377358490566038, 0.10377358490566038, 0.10377358490566038, 0.10377358490566038, 0.10377358490566038, 0.16037735849056603, 0.1509433962264151, 0.10377358490566038, 0.10377358490566038, 0.10377358490566038, 0.10377358490566038, 0.10377358490566038, 0.10377358490566038, 0.10377358490566038, 0.11320754716981132, 0.12264150943396226, 0.12264150943396226, 0.14150943396226415, 0.1509433962264151, 0.20754716981132076, 0.20754716981132076, 0.20754716981132076, 0.20754716981132076, 0.20754716981132076, 0.32075471698113206, 0.46226415094339623], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4968.gap.json b/pfam_gap_rates/DUF4968.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..6eb926761ae26e4773796df6517865a05dcfe449
--- /dev/null
+++ b/pfam_gap_rates/DUF4968.gap.json
@@ -0,0 +1 @@
+{"family": "DUF4968", "n_seqs": 388, "length": 114, "gap_rates": [0.8737113402061856, 0.6237113402061856, 0.4639175257731959, 0.3634020618556701, 0.28865979381443296, 0.25257731958762886, 0.22164948453608246, 0.19329896907216496, 0.18041237113402062, 0.15463917525773196, 0.13402061855670103, 0.1056701030927835, 0.061855670103092786, 0.030927835051546393, 0.8247422680412371, 0.01288659793814433, 0.005154639175257732, 0.005154639175257732, 0.005154639175257732, 0.005154639175257732, 0.005154639175257732, 0.002577319587628866, 0.002577319587628866, 0.002577319587628866, 0.002577319587628866, 0.002577319587628866, 0.002577319587628866, 0.002577319587628866, 0.002577319587628866, 0.002577319587628866, 0.002577319587628866, 0.002577319587628866, 0.002577319587628866, 0.8582474226804123, 0.030927835051546393, 0.028350515463917526, 0.14175257731958762, 0.11597938144329897, 0.19329896907216496, 0.9355670103092784, 0.8994845360824743, 0.005154639175257732, 0.010309278350515464, 0.010309278350515464, 0.007731958762886598, 0.007731958762886598, 0.005154639175257732, 0.005154639175257732, 0.005154639175257732, 0.015463917525773196, 0.059278350515463915, 0.3247422680412371, 0.8041237113402062, 0.8865979381443299, 0.8917525773195877, 0.8994845360824743, 0.9072164948453608, 0.9149484536082474, 0.9149484536082474, 0.9226804123711341, 0.9149484536082474, 0.9149484536082474, 0.904639175257732, 0.8969072164948454, 0.8865979381443299, 0.865979381443299, 0.6932989690721649, 0.010309278350515464, 0.01288659793814433, 0.005154639175257732, 0.005154639175257732, 0.002577319587628866, 0.002577319587628866, 0.002577319587628866, 0.002577319587628866, 0.005154639175257732, 0.0, 0.005154639175257732, 0.007731958762886598, 0.007731958762886598, 0.01288659793814433, 0.010309278350515464, 0.005154639175257732, 0.002577319587628866, 0.002577319587628866, 0.002577319587628866, 0.002577319587628866, 0.002577319587628866, 0.002577319587628866, 0.002577319587628866, 0.005154639175257732, 0.01804123711340206, 0.01804123711340206, 0.13917525773195877, 0.020618556701030927, 0.020618556701030927, 0.020618556701030927, 0.03608247422680412, 0.03865979381443299, 0.041237113402061855, 0.05412371134020619, 0.05670103092783505, 0.09278350515463918, 0.9458762886597938, 0.059278350515463915, 0.06701030927835051, 0.07731958762886598, 0.08762886597938144, 0.09278350515463918, 0.10309278350515463, 0.12886597938144329, 0.18298969072164947, 0.22422680412371135, 0.8608247422680413], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF5060.gap.json b/pfam_gap_rates/DUF5060.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..22fd5fd72c51b1130d8156e2f6f7b5f56d3df1a4
--- /dev/null
+++ b/pfam_gap_rates/DUF5060.gap.json
@@ -0,0 +1 @@
+{"family": "DUF5060", "n_seqs": 182, "length": 104, "gap_rates": [0.7527472527472527, 0.29120879120879123, 0.15384615384615385, 0.12087912087912088, 0.0989010989010989, 0.08791208791208792, 0.07692307692307693, 0.04395604395604396, 0.027472527472527472, 0.027472527472527472, 0.02197802197802198, 0.01098901098901099, 0.005494505494505495, 0.8076923076923077, 0.7912087912087912, 0.02197802197802198, 0.054945054945054944, 0.07142857142857142, 0.06593406593406594, 0.38461538461538464, 0.06043956043956044, 0.7802197802197802, 0.9065934065934066, 0.8736263736263736, 0.7692307692307693, 0.03296703296703297, 0.027472527472527472, 0.016483516483516484, 0.8296703296703297, 0.8241758241758241, 0.0989010989010989, 0.005494505494505495, 0.0, 0.005494505494505495, 0.005494505494505495, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.8076923076923077, 0.3791208791208791, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.6868131868131868, 0.8901098901098901, 0.9120879120879121, 0.9175824175824175, 0.9395604395604396, 0.9175824175824175, 0.8956043956043956, 0.8901098901098901, 0.6758241758241759, 0.0, 0.01098901098901099, 0.016483516483516484, 0.7417582417582418, 0.7637362637362637, 0.8791208791208791, 0.8846153846153846, 0.8901098901098901, 0.8791208791208791, 0.8736263736263736, 0.7582417582417582, 0.7307692307692307, 0.02197802197802198, 0.0, 0.8021978021978022, 0.8076923076923077, 0.9285714285714286, 0.9285714285714286, 0.8351648351648352, 0.8021978021978022, 0.7967032967032966, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.005494505494505495, 0.01098901098901099, 0.02197802197802198, 0.03296703296703297, 0.03296703296703297, 0.03296703296703297, 0.11538461538461539, 0.25824175824175827, 0.7252747252747253], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF5102.gap.json b/pfam_gap_rates/DUF5102.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..22a868024055e1e4349c752478346c1357795122
--- /dev/null
+++ b/pfam_gap_rates/DUF5102.gap.json
@@ -0,0 +1 @@
+{"family": "DUF5102", "n_seqs": 129, "length": 378, "gap_rates": [0.6976744186046512, 0.40310077519379844, 0.2713178294573643, 0.2558139534883721, 0.23255813953488372, 0.2248062015503876, 0.21705426356589147, 0.21705426356589147, 0.20930232558139536, 0.20155038759689922, 0.20155038759689922, 0.18604651162790697, 0.46511627906976744, 0.689922480620155, 0.7364341085271318, 0.8294573643410853, 0.9302325581395349, 0.8837209302325582, 0.7829457364341085, 0.7286821705426356, 0.5503875968992248, 0.4186046511627907, 0.1937984496124031, 0.16279069767441862, 0.16279069767441862, 0.14728682170542637, 0.14728682170542637, 0.14728682170542637, 0.14728682170542637, 0.14728682170542637, 0.14728682170542637, 0.15503875968992248, 0.9457364341085271, 0.9457364341085271, 0.32558139534883723, 0.8682170542635659, 0.20155038759689922, 0.18604651162790697, 0.17829457364341086, 0.17829457364341086, 0.15503875968992248, 0.7286821705426356, 0.8217054263565892, 0.875968992248062, 0.8914728682170543, 0.9147286821705426, 0.937984496124031, 0.9302325581395349, 0.8992248062015504, 0.8914728682170543, 0.8527131782945736, 0.8062015503875969, 0.689922480620155, 0.21705426356589147, 0.5271317829457365, 0.4496124031007752, 0.7906976744186046, 0.5193798449612403, 0.3875968992248062, 0.2868217054263566, 0.2558139534883721, 0.2248062015503876, 0.20930232558139536, 0.26356589147286824, 0.23255813953488372, 0.21705426356589147, 0.813953488372093, 0.17829457364341086, 0.17829457364341086, 0.17829457364341086, 0.17054263565891473, 0.17054263565891473, 0.20155038759689922, 0.1937984496124031, 0.18604651162790697, 0.16279069767441862, 0.9147286821705426, 0.937984496124031, 0.9457364341085271, 0.9457364341085271, 0.9457364341085271, 0.9457364341085271, 0.937984496124031, 0.937984496124031, 0.9147286821705426, 0.15503875968992248, 0.17829457364341086, 0.14728682170542637, 0.13953488372093023, 0.16279069767441862, 0.13953488372093023, 0.13953488372093023, 0.13178294573643412, 0.13178294573643412, 0.3953488372093023, 0.15503875968992248, 0.13953488372093023, 0.13178294573643412, 0.13178294573643412, 0.12403100775193798, 0.7751937984496124, 0.13178294573643412, 0.13953488372093023, 0.13953488372093023, 0.13953488372093023, 0.13953488372093023, 0.13178294573643412, 0.13178294573643412, 0.13178294573643412, 0.12403100775193798, 0.12403100775193798, 0.12403100775193798, 0.12403100775193798, 0.13178294573643412, 0.13178294573643412, 0.13953488372093023, 0.34108527131782945, 0.37209302325581395, 0.31007751937984496, 0.7286821705426356, 0.751937984496124, 0.8217054263565892, 0.8527131782945736, 0.8604651162790697, 0.9069767441860465, 0.9302325581395349, 0.9457364341085271, 0.9302325581395349, 0.9147286821705426, 0.9069767441860465, 0.8604651162790697, 0.8449612403100775, 0.7829457364341085, 0.7286821705426356, 0.6744186046511628, 0.17054263565891473, 0.17829457364341086, 0.16279069767441862, 0.17054263565891473, 0.1937984496124031, 0.8604651162790697, 0.5581395348837209, 0.875968992248062, 0.751937984496124, 0.20155038759689922, 0.1937984496124031, 0.16279069767441862, 0.13953488372093023, 0.10077519379844961, 0.9224806201550387, 0.09302325581395349, 0.09302325581395349, 0.09302325581395349, 0.09302325581395349, 0.09302325581395349, 0.10077519379844961, 0.09302325581395349, 0.10077519379844961, 0.10077519379844961, 0.10852713178294573, 0.10077519379844961, 0.09302325581395349, 0.09302325581395349, 0.09302325581395349, 0.09302325581395349, 0.09302325581395349, 0.8217054263565892, 0.10852713178294573, 0.10852713178294573, 0.10852713178294573, 0.10852713178294573, 0.937984496124031, 0.11627906976744186, 0.10852713178294573, 0.10077519379844961, 0.10077519379844961, 0.10077519379844961, 0.10077519379844961, 0.10077519379844961, 0.10077519379844961, 0.10077519379844961, 0.10077519379844961, 0.10077519379844961, 0.10077519379844961, 0.10077519379844961, 0.10077519379844961, 0.10077519379844961, 0.10077519379844961, 0.10077519379844961, 0.10077519379844961, 0.10077519379844961, 0.10077519379844961, 0.10077519379844961, 0.10077519379844961, 0.10077519379844961, 0.10077519379844961, 0.10077519379844961, 0.10077519379844961, 0.10852713178294573, 0.10077519379844961, 0.11627906976744186, 0.20930232558139536, 0.18604651162790697, 0.16279069767441862, 0.8992248062015504, 0.3488372093023256, 0.20930232558139536, 0.18604651162790697, 0.18604651162790697, 0.20930232558139536, 0.37209302325581395, 0.29457364341085274, 0.20930232558139536, 0.17054263565891473, 0.17054263565891473, 0.16279069767441862, 0.15503875968992248, 0.15503875968992248, 0.17054263565891473, 0.17829457364341086, 0.2713178294573643, 0.20930232558139536, 0.18604651162790697, 0.20930232558139536, 0.2248062015503876, 0.2558139534883721, 0.24031007751937986, 0.24806201550387597, 0.7751937984496124, 0.8294573643410853, 0.8837209302325582, 0.9457364341085271, 0.937984496124031, 0.8449612403100775, 0.813953488372093, 0.7131782945736435, 0.3333333333333333, 0.4573643410852713, 0.3488372093023256, 0.7984496124031008, 0.8837209302325582, 0.937984496124031, 0.9302325581395349, 0.8449612403100775, 0.6201550387596899, 0.35658914728682173, 0.3875968992248062, 0.3875968992248062, 0.35658914728682173, 0.3488372093023256, 0.31007751937984496, 0.6821705426356589, 0.9069767441860465, 0.5968992248062015, 0.2713178294573643, 0.2248062015503876, 0.20930232558139536, 0.20155038759689922, 0.20930232558139536, 0.20930232558139536, 0.20930232558139536, 0.20930232558139536, 0.20155038759689922, 0.1937984496124031, 0.20155038759689922, 0.20930232558139536, 0.24806201550387597, 0.26356589147286824, 0.31007751937984496, 0.43410852713178294, 0.3953488372093023, 0.8449612403100775, 0.8604651162790697, 0.875968992248062, 0.8992248062015504, 0.9069767441860465, 0.9147286821705426, 0.9224806201550387, 0.937984496124031, 0.9224806201550387, 0.9147286821705426, 0.9069767441860465, 0.8914728682170543, 0.875968992248062, 0.8604651162790697, 0.8372093023255814, 0.5503875968992248, 0.5503875968992248, 0.4728682170542636, 0.3953488372093023, 0.26356589147286824, 0.23255813953488372, 0.21705426356589147, 0.9069767441860465, 0.20155038759689922, 0.17829457364341086, 0.16279069767441862, 0.15503875968992248, 0.15503875968992248, 0.14728682170542637, 0.13953488372093023, 0.13953488372093023, 0.13953488372093023, 0.13953488372093023, 0.13953488372093023, 0.14728682170542637, 0.13953488372093023, 0.13953488372093023, 0.13953488372093023, 0.13178294573643412, 0.13178294573643412, 0.13178294573643412, 0.13178294573643412, 0.13178294573643412, 0.13178294573643412, 0.13953488372093023, 0.13178294573643412, 0.13178294573643412, 0.13178294573643412, 0.13953488372093023, 0.13953488372093023, 0.14728682170542637, 0.15503875968992248, 0.15503875968992248, 0.15503875968992248, 0.15503875968992248, 0.15503875968992248, 0.15503875968992248, 0.15503875968992248, 0.15503875968992248, 0.13953488372093023, 0.13953488372093023, 0.13953488372093023, 0.13178294573643412, 0.13178294573643412, 0.13178294573643412, 0.13178294573643412, 0.13178294573643412, 0.13178294573643412, 0.13178294573643412, 0.13178294573643412, 0.13178294573643412, 0.13178294573643412, 0.13178294573643412, 0.13178294573643412, 0.13178294573643412, 0.13178294573643412, 0.13178294573643412, 0.13178294573643412, 0.13178294573643412, 0.13178294573643412, 0.13178294573643412, 0.13178294573643412, 0.13178294573643412, 0.13178294573643412, 0.13178294573643412, 0.13178294573643412, 0.13178294573643412, 0.13178294573643412, 0.13178294573643412, 0.13178294573643412, 0.13953488372093023, 0.13953488372093023, 0.14728682170542637, 0.14728682170542637, 0.15503875968992248, 0.15503875968992248, 0.16279069767441862, 0.16279069767441862, 0.16279069767441862, 0.16279069767441862, 0.17054263565891473, 0.17054263565891473, 0.17054263565891473, 0.18604651162790697, 0.21705426356589147, 0.27906976744186046, 0.6434108527131783], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF5117.gap.json b/pfam_gap_rates/DUF5117.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..7474927fac8040b023c6dcea10e4b701e55447a9
--- /dev/null
+++ b/pfam_gap_rates/DUF5117.gap.json
@@ -0,0 +1 @@
+{"family": "DUF5117", "n_seqs": 347, "length": 226, "gap_rates": [0.4495677233429395, 0.40057636887608067, 0.3631123919308357, 0.3025936599423631, 0.2276657060518732, 0.16138328530259366, 0.8933717579250721, 0.09798270893371758, 0.07780979827089338, 0.069164265129683, 0.06628242074927954, 0.06340057636887608, 0.06051873198847262, 0.06051873198847262, 0.24495677233429394, 0.3227665706051873, 0.08645533141210375, 0.06628242074927954, 0.1786743515850144, 0.3256484149855908, 0.06340057636887608, 0.05475504322766571, 0.05187319884726225, 0.04899135446685879, 0.04899135446685879, 0.04610951008645533, 0.04610951008645533, 0.04610951008645533, 0.04899135446685879, 0.05187319884726225, 0.05475504322766571, 0.33429394812680113, 0.4697406340057637, 0.23631123919308358, 0.05475504322766571, 0.08069164265129683, 0.8847262247838616, 0.3371757925072046, 0.037463976945244955, 0.0345821325648415, 0.03170028818443804, 0.03170028818443804, 0.02881844380403458, 0.02881844380403458, 0.02881844380403458, 0.02881844380403458, 0.025936599423631124, 0.025936599423631124, 0.025936599423631124, 0.023054755043227664, 0.023054755043227664, 0.023054755043227664, 0.023054755043227664, 0.023054755043227664, 0.023054755043227664, 0.025936599423631124, 0.025936599423631124, 0.025936599423631124, 0.023054755043227664, 0.025936599423631124, 0.025936599423631124, 0.9394812680115274, 0.025936599423631124, 0.025936599423631124, 0.025936599423631124, 0.3314121037463977, 0.40634005763688763, 0.08645533141210375, 0.9481268011527377, 0.9452449567723343, 0.0345821325648415, 0.025936599423631124, 0.025936599423631124, 0.025936599423631124, 0.025936599423631124, 0.037463976945244955, 0.025936599423631124, 0.025936599423631124, 0.025936599423631124, 0.025936599423631124, 0.02881844380403458, 0.025936599423631124, 0.025936599423631124, 0.05187319884726225, 0.037463976945244955, 0.025936599423631124, 0.03170028818443804, 0.29971181556195964, 0.08645533141210375, 0.0893371757925072, 0.13544668587896252, 0.14985590778097982, 0.1585014409221902, 0.18155619596541786, 0.15561959654178675, 0.12680115273775217, 0.10951008645533142, 0.08645533141210375, 0.05187319884726225, 0.025936599423631124, 0.8789625360230547, 0.9020172910662824, 0.9250720461095101, 0.8904899135446686, 0.7492795389048992, 0.020172910662824207, 0.01729106628242075, 0.01729106628242075, 0.023054755043227664, 0.020172910662824207, 0.01729106628242075, 0.01729106628242075, 0.01440922190201729, 0.01440922190201729, 0.011527377521613832, 0.011527377521613832, 0.008645533141210375, 0.008645533141210375, 0.008645533141210375, 0.008645533141210375, 0.011527377521613832, 0.011527377521613832, 0.011527377521613832, 0.011527377521613832, 0.011527377521613832, 0.011527377521613832, 0.011527377521613832, 0.011527377521613832, 0.011527377521613832, 0.011527377521613832, 0.011527377521613832, 0.011527377521613832, 0.011527377521613832, 0.011527377521613832, 0.2680115273775216, 0.5648414985590778, 0.7262247838616714, 0.8155619596541787, 0.8703170028818443, 0.8904899135446686, 0.899135446685879, 0.9193083573487032, 0.9394812680115274, 0.9106628242074928, 0.8962536023054755, 0.8818443804034583, 0.8530259365994236, 0.7463976945244957, 0.6484149855907781, 0.42363112391930835, 0.21613832853025935, 0.08645533141210375, 0.4034582132564842, 0.2132564841498559, 0.6974063400576369, 0.8933717579250721, 0.7896253602305475, 0.6051873198847262, 0.16714697406340057, 0.08357348703170028, 0.553314121037464, 0.7838616714697406, 0.3976945244956772, 0.023054755043227664, 0.8904899135446686, 0.01440922190201729, 0.011527377521613832, 0.8213256484149856, 0.011527377521613832, 0.011527377521613832, 0.008645533141210375, 0.01729106628242075, 0.01729106628242075, 0.008645533141210375, 0.008645533141210375, 0.008645533141210375, 0.008645533141210375, 0.011527377521613832, 0.011527377521613832, 0.011527377521613832, 0.008645533141210375, 0.008645533141210375, 0.02881844380403458, 0.008645533141210375, 0.9337175792507204, 0.008645533141210375, 0.008645533141210375, 0.008645533141210375, 0.008645533141210375, 0.008645533141210375, 0.008645533141210375, 0.011527377521613832, 0.011527377521613832, 0.011527377521613832, 0.008645533141210375, 0.011527377521613832, 0.008645533141210375, 0.008645533141210375, 0.008645533141210375, 0.008645533141210375, 0.008645533141210375, 0.008645533141210375, 0.011527377521613832, 0.008645533141210375, 0.008645533141210375, 0.01440922190201729, 0.01440922190201729, 0.11239193083573487, 0.023054755043227664, 0.01440922190201729, 0.023054755043227664, 0.023054755043227664, 0.023054755043227664, 0.025936599423631124, 0.023054755043227664, 0.020172910662824207, 0.020172910662824207, 0.020172910662824207, 0.020172910662824207, 0.020172910662824207, 0.020172910662824207, 0.020172910662824207, 0.023054755043227664, 0.040345821325648415, 0.069164265129683, 0.2507204610951009], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF5118.gap.json b/pfam_gap_rates/DUF5118.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..8b173a15600b9df0533b689430e1a428da448db9
--- /dev/null
+++ b/pfam_gap_rates/DUF5118.gap.json
@@ -0,0 +1 @@
+{"family": "DUF5118", "n_seqs": 212, "length": 54, "gap_rates": [0.7311320754716981, 0.24056603773584906, 0.11320754716981132, 0.09905660377358491, 0.09433962264150944, 0.08490566037735849, 0.08018867924528301, 0.07075471698113207, 0.05188679245283019, 0.0330188679245283, 0.11320754716981132, 0.8632075471698113, 0.24056603773584906, 0.014150943396226415, 0.0047169811320754715, 0.0, 0.0, 0.0, 0.9481132075471698, 0.0, 0.0, 0.0, 0.0, 0.0, 0.8349056603773585, 0.8018867924528302, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.08490566037735849, 0.08490566037735849, 0.0, 0.0, 0.0, 0.0, 0.0047169811320754715, 0.009433962264150943, 0.009433962264150943, 0.014150943396226415, 0.02358490566037736, 0.02358490566037736, 0.0330188679245283, 0.05188679245283019, 0.1792452830188679, 0.5047169811320755], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF5131.gap.json b/pfam_gap_rates/DUF5131.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..611e6a764fc74d97956568e1514ea72e2c6bbe19
--- /dev/null
+++ b/pfam_gap_rates/DUF5131.gap.json
@@ -0,0 +1 @@
+{"family": "DUF5131", "n_seqs": 359, "length": 374, "gap_rates": [0.7047353760445683, 0.4568245125348189, 0.4428969359331476, 0.4373259052924791, 0.43175487465181056, 0.43175487465181056, 0.42896935933147634, 0.40668523676880225, 0.3370473537604457, 0.17827298050139276, 0.14763231197771587, 0.14484679665738162, 0.14484679665738162, 0.14484679665738162, 0.14206128133704735, 0.14206128133704735, 0.1392757660167131, 0.14484679665738162, 0.17548746518105848, 0.24512534818941503, 0.24233983286908078, 0.20891364902506965, 0.13649025069637882, 0.13370473537604458, 0.13370473537604458, 0.13370473537604458, 0.13370473537604458, 0.13370473537604458, 0.13370473537604458, 0.13370473537604458, 0.13370473537604458, 0.9220055710306406, 0.12813370473537605, 0.1309192200557103, 0.1309192200557103, 0.12813370473537605, 0.1309192200557103, 0.12813370473537605, 0.12813370473537605, 0.12813370473537605, 0.12813370473537605, 0.181058495821727, 0.20334261838440112, 0.19498607242339833, 0.3370473537604457, 0.8690807799442897, 0.9164345403899722, 0.83008356545961, 0.6016713091922006, 0.6434540389972145, 0.6211699164345403, 0.6657381615598886, 0.5877437325905293, 0.9080779944289693, 0.935933147632312, 0.9108635097493036, 0.8997214484679665, 0.6434540389972145, 0.4596100278551532, 0.38997214484679665, 0.35376044568245124, 0.2924791086350975, 0.2562674094707521, 0.2116991643454039, 0.20612813370473537, 0.13649025069637882, 0.15041782729805014, 0.14206128133704735, 0.12534818941504178, 0.12256267409470752, 0.12534818941504178, 0.13370473537604458, 0.14206128133704735, 0.14206128133704735, 0.11977715877437325, 0.11977715877437325, 0.116991643454039, 0.10584958217270195, 0.8746518105849582, 0.8857938718662952, 0.8857938718662952, 0.9331476323119777, 0.9387186629526463, 0.9415041782729805, 0.9387186629526463, 0.8857938718662952, 0.8857938718662952, 0.8802228412256268, 0.871866295264624, 0.10027855153203342, 0.0947075208913649, 0.0947075208913649, 0.09749303621169916, 0.09192200557103064, 0.09192200557103064, 0.10027855153203342, 0.09192200557103064, 0.09192200557103064, 0.0807799442896936, 0.0807799442896936, 0.0807799442896936, 0.0807799442896936, 0.0807799442896936, 0.0807799442896936, 0.11142061281337047, 0.1392757660167131, 0.3398328690807799, 0.10027855153203342, 0.08913649025069638, 0.08356545961002786, 0.08356545961002786, 0.08356545961002786, 0.08356545961002786, 0.08356545961002786, 0.08356545961002786, 0.08356545961002786, 0.0807799442896936, 0.0807799442896936, 0.07520891364902507, 0.07520891364902507, 0.0807799442896936, 0.07799442896935933, 0.0807799442896936, 0.07799442896935933, 0.07799442896935933, 0.07799442896935933, 0.07799442896935933, 0.07799442896935933, 0.07520891364902507, 0.07520891364902507, 0.07520891364902507, 0.07520891364902507, 0.07520891364902507, 0.07520891364902507, 0.07520891364902507, 0.07520891364902507, 0.07520891364902507, 0.07520891364902507, 0.0947075208913649, 0.09749303621169916, 0.09192200557103064, 0.0947075208913649, 0.13649025069637882, 0.4763231197771588, 0.48467966573816157, 0.48746518105849584, 0.4763231197771588, 0.22562674094707522, 0.22284122562674094, 0.8607242339832869, 0.8774373259052924, 0.883008356545961, 0.8857938718662952, 0.8913649025069638, 0.8913649025069638, 0.8913649025069638, 0.8913649025069638, 0.9052924791086351, 0.9136490250696379, 0.9192200557103064, 0.9275766016713092, 0.9415041782729805, 0.947075208913649, 0.947075208913649, 0.947075208913649, 0.947075208913649, 0.935933147632312, 0.9192200557103064, 0.9164345403899722, 0.9080779944289693, 0.8997214484679665, 0.8913649025069638, 0.8913649025069638, 0.8913649025069638, 0.8885793871866295, 0.883008356545961, 0.8802228412256268, 0.8690807799442897, 0.8523676880222841, 0.36768802228412256, 0.3064066852367688, 0.8857938718662952, 0.07242339832869081, 0.07242339832869081, 0.07242339832869081, 0.07242339832869081, 0.07242339832869081, 0.07242339832869081, 0.07242339832869081, 0.06963788300835655, 0.06963788300835655, 0.06406685236768803, 0.06406685236768803, 0.06406685236768803, 0.06685236768802229, 0.06685236768802229, 0.4011142061281337, 0.1309192200557103, 0.08913649025069638, 0.09192200557103064, 0.09192200557103064, 0.0807799442896936, 0.07520891364902507, 0.07242339832869081, 0.07242339832869081, 0.06406685236768803, 0.947075208913649, 0.06685236768802229, 0.06685236768802229, 0.06406685236768803, 0.06406685236768803, 0.06685236768802229, 0.06406685236768803, 0.06406685236768803, 0.06406685236768803, 0.06406685236768803, 0.06406685236768803, 0.06406685236768803, 0.06406685236768803, 0.06128133704735376, 0.0584958217270195, 0.0584958217270195, 0.06128133704735376, 0.06406685236768803, 0.5626740947075209, 0.6016713091922006, 0.5598885793871866, 0.06406685236768803, 0.06406685236768803, 0.06406685236768803, 0.5403899721448467, 0.5654596100278552, 0.7409470752089137, 0.8384401114206128, 0.8523676880222841, 0.8607242339832869, 0.8662952646239555, 0.8690807799442897, 0.8774373259052924, 0.8802228412256268, 0.8885793871866295, 0.8941504178272981, 0.9052924791086351, 0.9136490250696379, 0.924791086350975, 0.935933147632312, 0.9442896935933147, 0.9331476323119777, 0.924791086350975, 0.9080779944289693, 0.9025069637883009, 0.8913649025069638, 0.8802228412256268, 0.8802228412256268, 0.8774373259052924, 0.8662952646239555, 0.8635097493036211, 0.8579387186629527, 0.8440111420612814, 0.8217270194986073, 0.6545961002785515, 0.5543175487465181, 0.5403899721448467, 0.06406685236768803, 0.0807799442896936, 0.07242339832869081, 0.07242339832869081, 0.07520891364902507, 0.07799442896935933, 0.07799442896935933, 0.07799442896935933, 0.07799442896935933, 0.07799442896935933, 0.07799442896935933, 0.07799442896935933, 0.0807799442896936, 0.0807799442896936, 0.0807799442896936, 0.0807799442896936, 0.0807799442896936, 0.07242339832869081, 0.07242339832869081, 0.07242339832869081, 0.07242339832869081, 0.07242339832869081, 0.07242339832869081, 0.07520891364902507, 0.07520891364902507, 0.07520891364902507, 0.07242339832869081, 0.07242339832869081, 0.07799442896935933, 0.07799442896935933, 0.07799442896935933, 0.07799442896935933, 0.07799442896935933, 0.07799442896935933, 0.07799442896935933, 0.07799442896935933, 0.07799442896935933, 0.0807799442896936, 0.0807799442896936, 0.0807799442896936, 0.11420612813370473, 0.18662952646239556, 0.19498607242339833, 0.1977715877437326, 0.467966573816156, 0.4986072423398329, 0.5097493036211699, 0.5626740947075209, 0.596100278551532, 0.8022284122562674, 0.8133704735376045, 0.8245125348189415, 0.8328690807799443, 0.8579387186629527, 0.8635097493036211, 0.8662952646239555, 0.8662952646239555, 0.8746518105849582, 0.8746518105849582, 0.8885793871866295, 0.8997214484679665, 0.8997214484679665, 0.9052924791086351, 0.9080779944289693, 0.9108635097493036, 0.9220055710306406, 0.9220055710306406, 0.9303621169916435, 0.9442896935933147, 0.9387186629526463, 0.9275766016713092, 0.9220055710306406, 0.9192200557103064, 0.9080779944289693, 0.9052924791086351, 0.9052924791086351, 0.8997214484679665, 0.8913649025069638, 0.8802228412256268, 0.8746518105849582, 0.871866295264624, 0.8662952646239555, 0.8662952646239555, 0.8635097493036211, 0.8356545961002786, 0.8272980501392758, 0.8161559888579387, 0.8105849582172702, 0.8022284122562674, 0.7883008356545961, 0.7158774373259053, 0.713091922005571, 0.5041782729805014, 0.49025069637883006, 0.49303621169916434, 0.48467966573816157, 0.48467966573816157, 0.49025069637883006, 0.49025069637883006, 0.4958217270194986, 0.4958217270194986, 0.4958217270194986, 0.4986072423398329, 0.4986072423398329, 0.4986072423398329, 0.5013927576601671, 0.5013927576601671, 0.5013927576601671, 0.5013927576601671, 0.5013927576601671, 0.5041782729805014], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF552.gap.json b/pfam_gap_rates/DUF552.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..5b7a5a8b729f44d48b47c6fc1691ebfe80e53f71
--- /dev/null
+++ b/pfam_gap_rates/DUF552.gap.json
@@ -0,0 +1 @@
+{"family": "DUF552", "n_seqs": 1009, "length": 74, "gap_rates": [0.2566897918731417, 0.10109018830525272, 0.036669970267591674, 0.023785926660059464, 0.019821605550049554, 0.014866204162537165, 0.014866204162537165, 0.011892963330029732, 0.011892963330029732, 0.011892963330029732, 0.010901883052527254, 0.008919722497522299, 0.006937561942517344, 0.003964321110009911, 0.002973240832507433, 0.002973240832507433, 0.002973240832507433, 0.0019821605550049554, 0.0019821605550049554, 0.002973240832507433, 0.0019821605550049554, 0.002973240832507433, 0.0019821605550049554, 0.0019821605550049554, 0.0019821605550049554, 0.0009910802775024777, 0.0009910802775024777, 0.0009910802775024777, 0.0009910802775024777, 0.0009910802775024777, 0.0009910802775024777, 0.0009910802775024777, 0.0019821605550049554, 0.0019821605550049554, 0.9395441030723488, 0.9266600594648167, 0.0009910802775024777, 0.0019821605550049554, 0.0019821605550049554, 0.0009910802775024777, 0.0019821605550049554, 0.0019821605550049554, 0.0009910802775024777, 0.0009910802775024777, 0.0009910802775024777, 0.0019821605550049554, 0.0019821605550049554, 0.0019821605550049554, 0.0019821605550049554, 0.002973240832507433, 0.002973240832507433, 0.002973240832507433, 0.002973240832507433, 0.002973240832507433, 0.002973240832507433, 0.002973240832507433, 0.002973240832507433, 0.002973240832507433, 0.003964321110009911, 0.003964321110009911, 0.003964321110009911, 0.004955401387512388, 0.003964321110009911, 0.003964321110009911, 0.003964321110009911, 0.009910802775024777, 0.010901883052527254, 0.02081268582755203, 0.02973240832507433, 0.031714568880079286, 0.04360753221010902, 0.05946481665014866, 0.11298315163528246, 0.1774033696729435], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF560.gap.json b/pfam_gap_rates/DUF560.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..8348876c036579a0dbf48a0d4c62a47439531a84
--- /dev/null
+++ b/pfam_gap_rates/DUF560.gap.json
@@ -0,0 +1 @@
+{"family": "DUF560", "n_seqs": 148, "length": 322, "gap_rates": [0.6283783783783784, 0.6283783783783784, 0.5878378378378378, 0.5405405405405406, 0.5067567567567568, 0.49324324324324326, 0.47297297297297297, 0.4527027027027027, 0.4391891891891892, 0.4391891891891892, 0.41216216216216217, 0.39864864864864863, 0.39864864864864863, 0.39864864864864863, 0.39864864864864863, 0.39864864864864863, 0.39864864864864863, 0.39864864864864863, 0.39864864864864863, 0.39864864864864863, 0.39864864864864863, 0.39864864864864863, 0.39864864864864863, 0.39864864864864863, 0.6283783783783784, 0.7702702702702703, 0.9256756756756757, 0.9459459459459459, 0.9256756756756757, 0.8108108108108109, 0.7364864864864865, 0.6216216216216216, 0.5540540540540541, 0.527027027027027, 0.5202702702702703, 0.5067567567567568, 0.4797297297297297, 0.43243243243243246, 0.41216216216216217, 0.4527027027027027, 0.38513513513513514, 0.3783783783783784, 0.35135135135135137, 0.35135135135135137, 0.34459459459459457, 0.34459459459459457, 0.34459459459459457, 0.34459459459459457, 0.34459459459459457, 0.33783783783783783, 0.31756756756756754, 0.31756756756756754, 0.31756756756756754, 0.2972972972972973, 0.2905405405405405, 0.2972972972972973, 0.2972972972972973, 0.28378378378378377, 0.28378378378378377, 0.25675675675675674, 0.25675675675675674, 0.25675675675675674, 0.25675675675675674, 0.25675675675675674, 0.25, 0.24324324324324326, 0.25, 0.24324324324324326, 0.23648648648648649, 0.23648648648648649, 0.23648648648648649, 0.23648648648648649, 0.23648648648648649, 0.22972972972972974, 0.22972972972972974, 0.23648648648648649, 0.22297297297297297, 0.22297297297297297, 0.21621621621621623, 0.20945945945945946, 0.3310810810810811, 0.22972972972972974, 0.22297297297297297, 0.22972972972972974, 0.20945945945945946, 0.9324324324324325, 0.19594594594594594, 0.19594594594594594, 0.19594594594594594, 0.1891891891891892, 0.1891891891891892, 0.18243243243243243, 0.18243243243243243, 0.18243243243243243, 0.18243243243243243, 0.17567567567567569, 0.17567567567567569, 0.17567567567567569, 0.17567567567567569, 0.17567567567567569, 0.1891891891891892, 0.18243243243243243, 0.18243243243243243, 0.16216216216216217, 0.16216216216216217, 0.16216216216216217, 0.1554054054054054, 0.1554054054054054, 0.16216216216216217, 0.1554054054054054, 0.14864864864864866, 0.14189189189189189, 0.12837837837837837, 0.12837837837837837, 0.10810810810810811, 0.10135135135135136, 0.10135135135135136, 0.10135135135135136, 0.8716216216216216, 0.8986486486486487, 0.9256756756756757, 0.9391891891891891, 0.9256756756756757, 0.918918918918919, 0.8918918918918919, 0.8648648648648649, 0.0945945945945946, 0.0945945945945946, 0.10135135135135136, 0.0945945945945946, 0.0945945945945946, 0.0945945945945946, 0.08108108108108109, 0.08108108108108109, 0.08108108108108109, 0.07432432432432433, 0.07432432432432433, 0.07432432432432433, 0.07432432432432433, 0.06756756756756757, 0.06756756756756757, 0.06756756756756757, 0.06756756756756757, 0.06756756756756757, 0.06756756756756757, 0.06756756756756757, 0.06756756756756757, 0.07432432432432433, 0.06756756756756757, 0.06756756756756757, 0.06756756756756757, 0.060810810810810814, 0.06756756756756757, 0.07432432432432433, 0.06756756756756757, 0.060810810810810814, 0.060810810810810814, 0.060810810810810814, 0.060810810810810814, 0.060810810810810814, 0.06756756756756757, 0.06756756756756757, 0.13513513513513514, 0.11486486486486487, 0.05405405405405406, 0.75, 0.9256756756756757, 0.9459459459459459, 0.9324324324324325, 0.8648648648648649, 0.6351351351351351, 0.04054054054054054, 0.04054054054054054, 0.04054054054054054, 0.04054054054054054, 0.04054054054054054, 0.0472972972972973, 0.05405405405405406, 0.0472972972972973, 0.04054054054054054, 0.04054054054054054, 0.0472972972972973, 0.0472972972972973, 0.04054054054054054, 0.0472972972972973, 0.05405405405405406, 0.05405405405405406, 0.9459459459459459, 0.0472972972972973, 0.05405405405405406, 0.0472972972972973, 0.033783783783783786, 0.033783783783783786, 0.04054054054054054, 0.05405405405405406, 0.0472972972972973, 0.04054054054054054, 0.04054054054054054, 0.04054054054054054, 0.04054054054054054, 0.04054054054054054, 0.04054054054054054, 0.04054054054054054, 0.04054054054054054, 0.04054054054054054, 0.04054054054054054, 0.04054054054054054, 0.8513513513513513, 0.0472972972972973, 0.04054054054054054, 0.8851351351351351, 0.8986486486486487, 0.8716216216216216, 0.04054054054054054, 0.04054054054054054, 0.04054054054054054, 0.04054054054054054, 0.04054054054054054, 0.04054054054054054, 0.0472972972972973, 0.04054054054054054, 0.0472972972972973, 0.0472972972972973, 0.04054054054054054, 0.04054054054054054, 0.033783783783783786, 0.033783783783783786, 0.033783783783783786, 0.04054054054054054, 0.04054054054054054, 0.033783783783783786, 0.033783783783783786, 0.10810810810810811, 0.8175675675675675, 0.9054054054054054, 0.75, 0.04054054054054054, 0.04054054054054054, 0.0472972972972973, 0.0472972972972973, 0.0472972972972973, 0.04054054054054054, 0.04054054054054054, 0.04054054054054054, 0.04054054054054054, 0.0472972972972973, 0.04054054054054054, 0.04054054054054054, 0.04054054054054054, 0.04054054054054054, 0.0472972972972973, 0.0472972972972973, 0.0472972972972973, 0.05405405405405406, 0.060810810810810814, 0.0472972972972973, 0.0472972972972973, 0.10810810810810811, 0.8716216216216216, 0.9459459459459459, 0.8851351351351351, 0.7972972972972973, 0.7162162162162162, 0.13513513513513514, 0.060810810810810814, 0.060810810810810814, 0.05405405405405406, 0.060810810810810814, 0.060810810810810814, 0.060810810810810814, 0.060810810810810814, 0.06756756756756757, 0.07432432432432433, 0.07432432432432433, 0.07432432432432433, 0.07432432432432433, 0.08108108108108109, 0.12162162162162163, 0.13513513513513514, 0.14864864864864866, 0.14864864864864866, 0.14864864864864866, 0.14864864864864866, 0.14864864864864866, 0.14864864864864866, 0.1554054054054054, 0.16216216216216217, 0.16216216216216217, 0.18243243243243243, 0.22972972972972974, 0.21621621621621623, 0.20270270270270271, 0.18243243243243243, 0.17567567567567569, 0.16891891891891891, 0.14864864864864866, 0.12837837837837837, 0.13513513513513514, 0.13513513513513514, 0.12837837837837837, 0.12837837837837837, 0.12837837837837837, 0.12837837837837837, 0.12837837837837837, 0.7972972972972973, 0.12837837837837837, 0.13513513513513514, 0.14189189189189189, 0.16891891891891891, 0.16891891891891891, 0.17567567567567569, 0.1891891891891892, 0.23648648648648649, 0.24324324324324326, 0.24324324324324326, 0.2702702702702703, 0.28378378378378377, 0.2972972972972973, 0.3310810810810811, 0.3783783783783784, 0.3783783783783784, 0.4189189189189189], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF566.gap.json b/pfam_gap_rates/DUF566.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..1fb5f8701aeccf70e0b32ef6735c7d979956633b
--- /dev/null
+++ b/pfam_gap_rates/DUF566.gap.json
@@ -0,0 +1 @@
+{"family": "DUF566", "n_seqs": 240, "length": 406, "gap_rates": [0.8333333333333334, 0.8208333333333333, 0.8, 0.7833333333333333, 0.7625, 0.7458333333333333, 0.725, 0.6708333333333333, 0.725, 0.7958333333333333, 0.8208333333333333, 0.8375, 0.85, 0.9125, 0.9333333333333333, 0.8625, 0.8458333333333333, 0.825, 0.8208333333333333, 0.7375, 0.7208333333333333, 0.6541666666666667, 0.8375, 0.6916666666666667, 0.6, 0.5791666666666667, 0.5666666666666667, 0.9291666666666667, 0.5416666666666666, 0.5333333333333333, 0.525, 0.5125, 0.9375, 0.45, 0.45, 0.44583333333333336, 0.44166666666666665, 0.4375, 0.43333333333333335, 0.7333333333333333, 0.43333333333333335, 0.4166666666666667, 0.3958333333333333, 0.36666666666666664, 0.36666666666666664, 0.3625, 0.35, 0.9166666666666666, 0.9458333333333333, 0.95, 0.925, 0.8875, 0.36666666666666664, 0.3625, 0.3458333333333333, 0.3375, 0.3333333333333333, 0.3333333333333333, 0.32916666666666666, 0.3333333333333333, 0.325, 0.325, 0.30833333333333335, 0.6, 0.625, 0.65, 0.6833333333333333, 0.7125, 0.8458333333333333, 0.9, 0.9333333333333333, 0.9458333333333333, 0.9458333333333333, 0.95, 0.9458333333333333, 0.9375, 0.9125, 0.8833333333333333, 0.7916666666666666, 0.7125, 0.6541666666666667, 0.6375, 0.6208333333333333, 0.6, 0.4625, 0.5291666666666667, 0.49166666666666664, 0.45, 0.8833333333333333, 0.9125, 0.9375, 0.9291666666666667, 0.9, 0.8833333333333333, 0.4041666666666667, 0.875, 0.9375, 0.9083333333333333, 0.8375, 0.3333333333333333, 0.32916666666666666, 0.325, 0.325, 0.325, 0.6083333333333333, 0.3333333333333333, 0.29583333333333334, 0.26666666666666666, 0.2708333333333333, 0.275, 0.2875, 0.2916666666666667, 0.32916666666666666, 0.42083333333333334, 0.4, 0.39166666666666666, 0.3958333333333333, 0.325, 0.6166666666666667, 0.6916666666666667, 0.7458333333333333, 0.8333333333333334, 0.85, 0.8708333333333333, 0.9041666666666667, 0.9166666666666666, 0.9375, 0.9041666666666667, 0.8833333333333333, 0.8541666666666666, 0.8416666666666667, 0.8, 0.725, 0.6625, 0.5875, 0.29583333333333334, 0.6458333333333334, 0.775, 0.8791666666666667, 0.9333333333333333, 0.9083333333333333, 0.8125, 0.7125, 0.6083333333333333, 0.21666666666666667, 0.225, 0.9458333333333333, 0.225, 0.22083333333333333, 0.21666666666666667, 0.22083333333333333, 0.225, 0.23333333333333334, 0.23333333333333334, 0.25416666666666665, 0.275, 0.25, 0.5333333333333333, 0.7208333333333333, 0.8125, 0.8416666666666667, 0.8583333333333333, 0.8708333333333333, 0.8958333333333334, 0.9041666666666667, 0.9208333333333333, 0.9416666666666667, 0.9083333333333333, 0.9, 0.8916666666666667, 0.8666666666666667, 0.8416666666666667, 0.8333333333333334, 0.8, 0.575, 0.49583333333333335, 0.4166666666666667, 0.29583333333333334, 0.24583333333333332, 0.22083333333333333, 0.20833333333333334, 0.20416666666666666, 0.4041666666666667, 0.22083333333333333, 0.20833333333333334, 0.20833333333333334, 0.2, 0.19583333333333333, 0.19583333333333333, 0.19583333333333333, 0.2, 0.2, 0.2, 0.22916666666666666, 0.25416666666666665, 0.44583333333333336, 0.5625, 0.85, 0.5708333333333333, 0.6166666666666667, 0.4791666666666667, 0.9166666666666666, 0.8541666666666666, 0.30416666666666664, 0.23333333333333334, 0.19166666666666668, 0.175, 0.16666666666666666, 0.1625, 0.16666666666666666, 0.17916666666666667, 0.18333333333333332, 0.19166666666666668, 0.20833333333333334, 0.20416666666666666, 0.19583333333333333, 0.25833333333333336, 0.25, 0.23333333333333334, 0.15416666666666667, 0.9333333333333333, 0.14166666666666666, 0.125, 0.12916666666666668, 0.12916666666666668, 0.13333333333333333, 0.12916666666666668, 0.15, 0.12916666666666668, 0.125, 0.9291666666666667, 0.9416666666666667, 0.9416666666666667, 0.9458333333333333, 0.9458333333333333, 0.9416666666666667, 0.9333333333333333, 0.9291666666666667, 0.12083333333333333, 0.12083333333333333, 0.12083333333333333, 0.12083333333333333, 0.12083333333333333, 0.12083333333333333, 0.12083333333333333, 0.12083333333333333, 0.1125, 0.1125, 0.1125, 0.1125, 0.10833333333333334, 0.10416666666666667, 0.10416666666666667, 0.10416666666666667, 0.10416666666666667, 0.10416666666666667, 0.10416666666666667, 0.10416666666666667, 0.10416666666666667, 0.1, 0.1, 0.10416666666666667, 0.10833333333333334, 0.1125, 0.1125, 0.10833333333333334, 0.1125, 0.11666666666666667, 0.11666666666666667, 0.1125, 0.10833333333333334, 0.10416666666666667, 0.10416666666666667, 0.1, 0.11666666666666667, 0.12083333333333333, 0.12916666666666668, 0.13333333333333333, 0.13333333333333333, 0.13333333333333333, 0.13333333333333333, 0.13333333333333333, 0.13333333333333333, 0.1375, 0.1375, 0.1375, 0.13333333333333333, 0.13333333333333333, 0.12916666666666668, 0.12916666666666668, 0.12916666666666668, 0.13333333333333333, 0.13333333333333333, 0.13333333333333333, 0.13333333333333333, 0.13333333333333333, 0.13333333333333333, 0.13333333333333333, 0.13333333333333333, 0.13333333333333333, 0.1375, 0.1375, 0.1375, 0.1375, 0.1375, 0.1375, 0.14166666666666666, 0.1375, 0.14166666666666666, 0.14166666666666666, 0.14166666666666666, 0.14166666666666666, 0.1375, 0.125, 0.12083333333333333, 0.12083333333333333, 0.125, 0.12083333333333333, 0.11666666666666667, 0.125, 0.12916666666666668, 0.13333333333333333, 0.13333333333333333, 0.13333333333333333, 0.13333333333333333, 0.13333333333333333, 0.13333333333333333, 0.13333333333333333, 0.13333333333333333, 0.13333333333333333, 0.13333333333333333, 0.13333333333333333, 0.1375, 0.1375, 0.1375, 0.13333333333333333, 0.13333333333333333, 0.13333333333333333, 0.13333333333333333, 0.13333333333333333, 0.13333333333333333, 0.13333333333333333, 0.13333333333333333, 0.13333333333333333, 0.13333333333333333, 0.13333333333333333, 0.13333333333333333, 0.13333333333333333, 0.15833333333333333, 0.1375, 0.13333333333333333, 0.12916666666666668, 0.125, 0.12083333333333333, 0.12916666666666668, 0.1375, 0.1375, 0.1375, 0.14166666666666666, 0.14583333333333334, 0.15, 0.15, 0.15, 0.15, 0.15, 0.15, 0.15, 0.15, 0.15, 0.14583333333333334, 0.14583333333333334, 0.15, 0.15, 0.15, 0.15416666666666667, 0.15416666666666667, 0.15416666666666667, 0.15416666666666667, 0.15416666666666667, 0.15416666666666667, 0.15416666666666667, 0.15833333333333333, 0.15833333333333333, 0.1625, 0.16666666666666666, 0.17083333333333334, 0.17916666666666667, 0.17916666666666667, 0.17916666666666667, 0.17916666666666667, 0.17916666666666667, 0.18333333333333332, 0.18333333333333332, 0.18333333333333332, 0.18333333333333332, 0.18333333333333332, 0.18333333333333332, 0.18333333333333332, 0.18333333333333332, 0.19166666666666668, 0.20416666666666666, 0.20833333333333334, 0.2125, 0.23333333333333334, 0.26666666666666666, 0.4375], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF59.gap.json b/pfam_gap_rates/DUF59.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..93fc74d120dac439744769835751bd639e5c493a
--- /dev/null
+++ b/pfam_gap_rates/DUF59.gap.json
@@ -0,0 +1 @@
+{"family": "DUF59", "n_seqs": 3041, "length": 84, "gap_rates": [0.6895757974350543, 0.2897073331141072, 0.16869450838539954, 0.1012824728707662, 0.0739888194672805, 0.058862216376192045, 0.052614271621177246, 0.046695166063794806, 0.026964814205853338, 0.015784281486353174, 0.012824728707661954, 0.010194015126603092, 0.009536336731338375, 0.009207497533706017, 0.03485695494902993, 0.008549819138441302, 0.007892140743176587, 0.8993752055244986, 0.007563301545544229, 0.006576783952647156, 0.006247944755014798, 0.007234462347911871, 0.007234462347911871, 0.007892140743176587, 0.007563301545544229, 0.0046037487668530086, 0.004274909569220651, 0.004274909569220651, 0.004274909569220651, 0.8881946728049983, 0.8691219993423216, 0.003946070371588293, 0.004932587964485367, 0.005590266359750082, 0.005261427162117725, 0.004274909569220651, 0.7750739888194673, 0.8914830647813219, 0.9184478789871753, 0.8839197632357777, 0.43735613285103586, 0.0036172311739559354, 0.0036172311739559354, 0.003946070371588293, 0.003946070371588293, 0.00295955277869122, 0.0026307135810588623, 0.0023018743834265043, 0.0026307135810588623, 0.003288391976323578, 0.004274909569220651, 0.040776060506412366, 0.00591910555738244, 0.00591910555738244, 0.006905623150279513, 0.007234462347911871, 0.9398224268332785, 0.01907267346267675, 0.01808615586977968, 0.014140085498191384, 0.013153567905294311, 0.01052285432423545, 0.012167050312397237, 0.013482407102926669, 0.015784281486353174, 0.01808615586977968, 0.020388030253206183, 0.022689904636632688, 0.02663597500822098, 0.03551463334429464, 0.04768168365669188, 0.8076290693850707, 0.11640907596185465, 0.15126603091088459, 0.18809602104570866, 0.20420914172969418, 0.41861229858599147, 0.4166392634001973, 0.2686616244656363, 0.28148635317329823, 0.2995725090430779, 0.3294968760276225, 0.5504768168365669, 0.8145346925353503], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF639.gap.json b/pfam_gap_rates/DUF639.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..fa98e4f7428705a80ff0d06dcadab2598ba3ab97
--- /dev/null
+++ b/pfam_gap_rates/DUF639.gap.json
@@ -0,0 +1 @@
+{"family": "DUF639", "n_seqs": 142, "length": 235, "gap_rates": [0.7605633802816901, 0.4154929577464789, 0.1267605633802817, 0.11971830985915492, 0.11971830985915492, 0.11971830985915492, 0.11971830985915492, 0.11971830985915492, 0.11971830985915492, 0.11971830985915492, 0.11971830985915492, 0.11971830985915492, 0.11971830985915492, 0.11971830985915492, 0.11971830985915492, 0.11971830985915492, 0.11971830985915492, 0.11971830985915492, 0.11971830985915492, 0.11971830985915492, 0.11267605633802817, 0.11267605633802817, 0.11267605633802817, 0.11267605633802817, 0.11267605633802817, 0.1056338028169014, 0.1056338028169014, 0.1056338028169014, 0.1056338028169014, 0.1056338028169014, 0.1056338028169014, 0.1056338028169014, 0.1056338028169014, 0.1056338028169014, 0.1056338028169014, 0.1056338028169014, 0.1056338028169014, 0.1056338028169014, 0.1056338028169014, 0.1056338028169014, 0.1056338028169014, 0.09859154929577464, 0.09859154929577464, 0.09859154929577464, 0.09859154929577464, 0.09859154929577464, 0.09859154929577464, 0.09859154929577464, 0.09859154929577464, 0.09859154929577464, 0.09154929577464789, 0.09154929577464789, 0.09154929577464789, 0.09154929577464789, 0.09154929577464789, 0.09154929577464789, 0.09154929577464789, 0.09154929577464789, 0.09154929577464789, 0.09154929577464789, 0.09154929577464789, 0.09154929577464789, 0.09154929577464789, 0.09154929577464789, 0.09154929577464789, 0.09154929577464789, 0.09859154929577464, 0.09154929577464789, 0.09154929577464789, 0.09154929577464789, 0.09154929577464789, 0.09154929577464789, 0.07746478873239436, 0.07746478873239436, 0.07746478873239436, 0.07746478873239436, 0.07746478873239436, 0.07746478873239436, 0.08450704225352113, 0.07746478873239436, 0.08450704225352113, 0.08450704225352113, 0.08450704225352113, 0.09154929577464789, 0.09154929577464789, 0.09154929577464789, 0.09154929577464789, 0.09154929577464789, 0.09154929577464789, 0.07746478873239436, 0.07042253521126761, 0.07042253521126761, 0.07042253521126761, 0.07042253521126761, 0.07042253521126761, 0.07042253521126761, 0.07042253521126761, 0.06338028169014084, 0.06338028169014084, 0.7816901408450704, 0.7816901408450704, 0.7816901408450704, 0.06338028169014084, 0.06338028169014084, 0.06338028169014084, 0.3380281690140845, 0.4154929577464789, 0.06338028169014084, 0.056338028169014086, 0.056338028169014086, 0.056338028169014086, 0.06338028169014084, 0.06338028169014084, 0.07042253521126761, 0.056338028169014086, 0.056338028169014086, 0.07042253521126761, 0.06338028169014084, 0.06338028169014084, 0.06338028169014084, 0.06338028169014084, 0.07042253521126761, 0.07042253521126761, 0.07042253521126761, 0.07042253521126761, 0.07042253521126761, 0.07042253521126761, 0.07042253521126761, 0.07042253521126761, 0.07042253521126761, 0.07042253521126761, 0.07042253521126761, 0.07042253521126761, 0.06338028169014084, 0.06338028169014084, 0.06338028169014084, 0.06338028169014084, 0.06338028169014084, 0.06338028169014084, 0.06338028169014084, 0.06338028169014084, 0.06338028169014084, 0.06338028169014084, 0.06338028169014084, 0.06338028169014084, 0.06338028169014084, 0.06338028169014084, 0.06338028169014084, 0.06338028169014084, 0.06338028169014084, 0.06338028169014084, 0.06338028169014084, 0.06338028169014084, 0.06338028169014084, 0.056338028169014086, 0.056338028169014086, 0.056338028169014086, 0.056338028169014086, 0.056338028169014086, 0.056338028169014086, 0.04929577464788732, 0.04929577464788732, 0.04929577464788732, 0.04225352112676056, 0.04225352112676056, 0.04929577464788732, 0.06338028169014084, 0.07746478873239436, 0.08450704225352113, 0.08450704225352113, 0.07746478873239436, 0.07746478873239436, 0.07746478873239436, 0.08450704225352113, 0.08450704225352113, 0.08450704225352113, 0.08450704225352113, 0.08450704225352113, 0.08450704225352113, 0.08450704225352113, 0.08450704225352113, 0.08450704225352113, 0.08450704225352113, 0.08450704225352113, 0.08450704225352113, 0.08450704225352113, 0.08450704225352113, 0.08450704225352113, 0.08450704225352113, 0.08450704225352113, 0.09154929577464789, 0.09154929577464789, 0.09154929577464789, 0.09154929577464789, 0.09154929577464789, 0.09154929577464789, 0.09154929577464789, 0.09859154929577464, 0.09859154929577464, 0.09859154929577464, 0.09154929577464789, 0.09154929577464789, 0.852112676056338, 0.09859154929577464, 0.09859154929577464, 0.1056338028169014, 0.09154929577464789, 0.09859154929577464, 0.1056338028169014, 0.09859154929577464, 0.09859154929577464, 0.09859154929577464, 0.09859154929577464, 0.09859154929577464, 0.09859154929577464, 0.09859154929577464, 0.09859154929577464, 0.09859154929577464, 0.09859154929577464, 0.11267605633802817, 0.11267605633802817, 0.11971830985915492, 0.1267605633802817, 0.13380281690140844, 0.13380281690140844, 0.13380281690140844, 0.13380281690140844, 0.14084507042253522, 0.14084507042253522, 0.14788732394366197, 0.2323943661971831, 0.4225352112676056, 0.6408450704225352, 0.8028169014084507, 0.9295774647887324], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF641.gap.json b/pfam_gap_rates/DUF641.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f4009ca6affac999852d0975418e0fb153d5cfea
--- /dev/null
+++ b/pfam_gap_rates/DUF641.gap.json
@@ -0,0 +1 @@
+{"family": "DUF641", "n_seqs": 175, "length": 131, "gap_rates": [0.72, 0.4057142857142857, 0.24571428571428572, 0.18285714285714286, 0.14285714285714285, 0.11428571428571428, 0.10285714285714286, 0.06285714285714286, 0.045714285714285714, 0.045714285714285714, 0.045714285714285714, 0.045714285714285714, 0.045714285714285714, 0.045714285714285714, 0.045714285714285714, 0.045714285714285714, 0.045714285714285714, 0.045714285714285714, 0.045714285714285714, 0.045714285714285714, 0.045714285714285714, 0.045714285714285714, 0.045714285714285714, 0.045714285714285714, 0.045714285714285714, 0.04, 0.04, 0.04, 0.03428571428571429, 0.03428571428571429, 0.03428571428571429, 0.04, 0.04, 0.04, 0.04, 0.03428571428571429, 0.03428571428571429, 0.03428571428571429, 0.03428571428571429, 0.04, 0.04, 0.04, 0.04, 0.04, 0.045714285714285714, 0.045714285714285714, 0.05142857142857143, 0.05142857142857143, 0.05142857142857143, 0.05142857142857143, 0.05142857142857143, 0.05142857142857143, 0.05142857142857143, 0.05142857142857143, 0.045714285714285714, 0.05142857142857143, 0.06285714285714286, 0.05714285714285714, 0.05142857142857143, 0.05714285714285714, 0.05714285714285714, 0.05714285714285714, 0.08, 0.08571428571428572, 0.17714285714285713, 0.12571428571428572, 0.32, 0.2, 0.5885714285714285, 0.8457142857142858, 0.9485714285714286, 0.8, 0.5657142857142857, 0.16, 0.13142857142857142, 0.11428571428571428, 0.07428571428571429, 0.06857142857142857, 0.06857142857142857, 0.05714285714285714, 0.05142857142857143, 0.05142857142857143, 0.05142857142857143, 0.05142857142857143, 0.045714285714285714, 0.10857142857142857, 0.10285714285714286, 0.11428571428571428, 0.10857142857142857, 0.11428571428571428, 0.11428571428571428, 0.11428571428571428, 0.06857142857142857, 0.06285714285714286, 0.05142857142857143, 0.05142857142857143, 0.05142857142857143, 0.05142857142857143, 0.05142857142857143, 0.05714285714285714, 0.05714285714285714, 0.05714285714285714, 0.05142857142857143, 0.05142857142857143, 0.05142857142857143, 0.05714285714285714, 0.06285714285714286, 0.06285714285714286, 0.06285714285714286, 0.06285714285714286, 0.06285714285714286, 0.06285714285714286, 0.06285714285714286, 0.06285714285714286, 0.06285714285714286, 0.06285714285714286, 0.06285714285714286, 0.06285714285714286, 0.06285714285714286, 0.06857142857142857, 0.08, 0.08, 0.12, 0.13142857142857142, 0.14285714285714285, 0.15428571428571428, 0.18285714285714286, 0.2057142857142857, 0.22285714285714286, 0.2571428571428571, 0.44], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF692.gap.json b/pfam_gap_rates/DUF692.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..abbc52f8380daa5f953d12a3c9256e493c703032
--- /dev/null
+++ b/pfam_gap_rates/DUF692.gap.json
@@ -0,0 +1 @@
+{"family": "DUF692", "n_seqs": 493, "length": 285, "gap_rates": [0.6247464503042597, 0.2332657200811359, 0.15618661257606492, 0.1440162271805274, 0.14198782961460446, 0.14198782961460446, 0.14198782961460446, 0.14198782961460446, 0.13793103448275862, 0.13793103448275862, 0.1359026369168357, 0.1359026369168357, 0.13184584178498987, 0.12981744421906694, 0.12981744421906694, 0.20892494929006086, 0.16024340770791076, 0.12373225152129817, 0.12170385395537525, 0.11359026369168357, 0.9066937119675457, 0.9432048681541582, 0.7748478701825557, 0.1075050709939148, 0.10547667342799188, 0.10547667342799188, 0.10344827586206896, 0.10344827586206896, 0.10344827586206896, 0.10344827586206896, 0.10344827586206896, 0.10344827586206896, 0.10547667342799188, 0.10547667342799188, 0.10547667342799188, 0.18661257606490872, 0.17647058823529413, 0.11561866125760649, 0.1075050709939148, 0.09533468559837728, 0.09533468559837728, 0.09533468559837728, 0.09127789046653144, 0.08519269776876268, 0.07302231237322515, 0.07099391480730223, 0.07099391480730223, 0.07505070993914807, 0.9249492900608519, 0.08519269776876268, 0.07910750507099391, 0.06896551724137931, 0.06896551724137931, 0.06693711967545639, 0.06288032454361055, 0.06288032454361055, 0.060851926977687626, 0.060851926977687626, 0.060851926977687626, 0.060851926977687626, 0.060851926977687626, 0.060851926977687626, 0.060851926977687626, 0.060851926977687626, 0.06288032454361055, 0.06288032454361055, 0.06693711967545639, 0.06693711967545639, 0.06288032454361055, 0.06288032454361055, 0.06288032454361055, 0.06288032454361055, 0.06288032454361055, 0.06288032454361055, 0.058823529411764705, 0.058823529411764705, 0.058823529411764705, 0.058823529411764705, 0.058823529411764705, 0.058823529411764705, 0.056795131845841784, 0.05476673427991886, 0.05476673427991886, 0.05476673427991886, 0.056795131845841784, 0.058823529411764705, 0.058823529411764705, 0.058823529411764705, 0.058823529411764705, 0.05476673427991886, 0.05476673427991886, 0.05070993914807302, 0.05070993914807302, 0.05273833671399594, 0.05070993914807302, 0.05273833671399594, 0.05476673427991886, 0.058823529411764705, 0.060851926977687626, 0.058823529411764705, 0.06693711967545639, 0.9188640973630832, 0.922920892494929, 0.9452332657200812, 0.9350912778904665, 0.9188640973630832, 0.9188640973630832, 0.22515212981744423, 0.06490872210953347, 0.060851926977687626, 0.058823529411764705, 0.058823529411764705, 0.060851926977687626, 0.058823529411764705, 0.060851926977687626, 0.05476673427991886, 0.05476673427991886, 0.05070993914807302, 0.0486815415821501, 0.0486815415821501, 0.04665314401622718, 0.05070993914807302, 0.04665314401622718, 0.04462474645030426, 0.04259634888438134, 0.04259634888438134, 0.04259634888438134, 0.04056795131845842, 0.04056795131845842, 0.04056795131845842, 0.04056795131845842, 0.04056795131845842, 0.04056795131845842, 0.04259634888438134, 0.04259634888438134, 0.04259634888438134, 0.04056795131845842, 0.04056795131845842, 0.05070993914807302, 0.04056795131845842, 0.04056795131845842, 0.04056795131845842, 0.038539553752535496, 0.038539553752535496, 0.038539553752535496, 0.038539553752535496, 0.038539553752535496, 0.038539553752535496, 0.04056795131845842, 0.19675456389452334, 0.05476673427991886, 0.04259634888438134, 0.06896551724137931, 0.06490872210953347, 0.05070993914807302, 0.038539553752535496, 0.036511156186612576, 0.038539553752535496, 0.038539553752535496, 0.036511156186612576, 0.034482758620689655, 0.032454361054766734, 0.032454361054766734, 0.034482758620689655, 0.034482758620689655, 0.034482758620689655, 0.034482758620689655, 0.034482758620689655, 0.036511156186612576, 0.038539553752535496, 0.036511156186612576, 0.038539553752535496, 0.04056795131845842, 0.04056795131845842, 0.04056795131845842, 0.04056795131845842, 0.04056795131845842, 0.04056795131845842, 0.04056795131845842, 0.04056795131845842, 0.04056795131845842, 0.04259634888438134, 0.04259634888438134, 0.04462474645030426, 0.04462474645030426, 0.04462474645030426, 0.04462474645030426, 0.04462474645030426, 0.04462474645030426, 0.947261663286004, 0.04665314401622718, 0.0486815415821501, 0.05070993914807302, 0.05070993914807302, 0.05070993914807302, 0.05273833671399594, 0.05070993914807302, 0.05070993914807302, 0.05070993914807302, 0.05070993914807302, 0.05070993914807302, 0.05273833671399594, 0.05273833671399594, 0.05476673427991886, 0.05273833671399594, 0.05070993914807302, 0.05070993914807302, 0.05070993914807302, 0.05070993914807302, 0.05070993914807302, 0.05070993914807302, 0.05273833671399594, 0.05273833671399594, 0.7099391480730223, 0.7809330628803245, 0.8620689655172413, 0.7464503042596349, 0.5212981744421906, 0.058823529411764705, 0.09939148073022312, 0.9371196754563894, 0.9107505070993914, 0.10344827586206896, 0.0973630831643002, 0.05476673427991886, 0.9371196754563894, 0.9452332657200812, 0.9391480730223124, 0.9350912778904665, 0.05273833671399594, 0.05273833671399594, 0.05070993914807302, 0.05070993914807302, 0.05273833671399594, 0.05070993914807302, 0.05273833671399594, 0.058823529411764705, 0.058823529411764705, 0.05070993914807302, 0.05070993914807302, 0.05070993914807302, 0.04665314401622718, 0.04665314401622718, 0.04665314401622718, 0.04665314401622718, 0.04462474645030426, 0.0486815415821501, 0.04462474645030426, 0.04462474645030426, 0.04462474645030426, 0.04462474645030426, 0.04462474645030426, 0.04462474645030426, 0.056795131845841784, 0.05476673427991886, 0.05070993914807302, 0.05070993914807302, 0.8945233265720081, 0.060851926977687626, 0.06490872210953347, 0.06490872210953347, 0.06896551724137931, 0.06896551724137931, 0.07910750507099391, 0.09127789046653144, 0.09533468559837728, 0.0973630831643002, 0.11156186612576065, 0.11764705882352941, 0.11359026369168357, 0.11561866125760649, 0.11967545638945233, 0.12170385395537525, 0.12373225152129817, 0.12981744421906694, 0.12981744421906694, 0.12981744421906694, 0.12981744421906694, 0.13184584178498987, 0.1359026369168357, 0.13995943204868155, 0.14198782961460446, 0.15821501014198783, 0.2231237322515213, 0.46247464503042596], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF742.gap.json b/pfam_gap_rates/DUF742.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..9a552754081ac1c456c60e2e7833d2450bda0f41
--- /dev/null
+++ b/pfam_gap_rates/DUF742.gap.json
@@ -0,0 +1 @@
+{"family": "DUF742", "n_seqs": 416, "length": 130, "gap_rates": [0.6610576923076923, 0.38461538461538464, 0.23076923076923078, 0.12980769230769232, 0.09134615384615384, 0.0889423076923077, 0.07211538461538461, 0.0673076923076923, 0.0673076923076923, 0.06490384615384616, 0.05048076923076923, 0.05048076923076923, 0.05048076923076923, 0.05048076923076923, 0.04807692307692308, 0.04567307692307692, 0.04567307692307692, 0.04807692307692308, 0.04567307692307692, 0.04567307692307692, 0.8629807692307693, 0.5456730769230769, 0.04326923076923077, 0.040865384615384616, 0.040865384615384616, 0.038461538461538464, 0.03125, 0.026442307692307692, 0.026442307692307692, 0.02403846153846154, 0.02403846153846154, 0.02403846153846154, 0.02403846153846154, 0.02403846153846154, 0.11538461538461539, 0.18028846153846154, 0.038461538461538464, 0.9326923076923077, 0.8822115384615384, 0.33653846153846156, 0.6490384615384616, 0.0625, 0.9326923076923077, 0.9350961538461539, 0.9399038461538461, 0.9447115384615384, 0.9447115384615384, 0.9447115384615384, 0.9350961538461539, 0.9326923076923077, 0.9326923076923077, 0.026442307692307692, 0.026442307692307692, 0.02403846153846154, 0.02403846153846154, 0.019230769230769232, 0.016826923076923076, 0.016826923076923076, 0.01201923076923077, 0.014423076923076924, 0.014423076923076924, 0.014423076923076924, 0.01201923076923077, 0.01201923076923077, 0.01201923076923077, 0.01201923076923077, 0.016826923076923076, 0.7524038461538461, 0.014423076923076924, 0.014423076923076924, 0.014423076923076924, 0.014423076923076924, 0.014423076923076924, 0.014423076923076924, 0.014423076923076924, 0.01201923076923077, 0.01201923076923077, 0.01201923076923077, 0.014423076923076924, 0.016826923076923076, 0.016826923076923076, 0.016826923076923076, 0.016826923076923076, 0.014423076923076924, 0.014423076923076924, 0.014423076923076924, 0.014423076923076924, 0.014423076923076924, 0.014423076923076924, 0.014423076923076924, 0.014423076923076924, 0.014423076923076924, 0.014423076923076924, 0.014423076923076924, 0.014423076923076924, 0.014423076923076924, 0.014423076923076924, 0.014423076923076924, 0.014423076923076924, 0.014423076923076924, 0.016826923076923076, 0.016826923076923076, 0.019230769230769232, 0.019230769230769232, 0.021634615384615384, 0.02403846153846154, 0.028846153846153848, 0.9206730769230769, 0.7884615384615384, 0.6538461538461539, 0.5793269230769231, 0.15865384615384615, 0.09615384615384616, 0.052884615384615384, 0.04326923076923077, 0.04326923076923077, 0.040865384615384616, 0.04326923076923077, 0.04326923076923077, 0.04326923076923077, 0.04326923076923077, 0.04326923076923077, 0.04326923076923077, 0.04326923076923077, 0.04326923076923077, 0.04567307692307692, 0.04567307692307692, 0.04567307692307692, 0.0673076923076923, 0.2644230769230769], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF763.gap.json b/pfam_gap_rates/DUF763.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ce76fc8000ad24f2e8737b69199dab1ce1797ea1
--- /dev/null
+++ b/pfam_gap_rates/DUF763.gap.json
@@ -0,0 +1 @@
+{"family": "DUF763", "n_seqs": 147, "length": 367, "gap_rates": [0.20408163265306123, 0.16326530612244897, 0.1360544217687075, 0.12244897959183673, 0.11564625850340136, 0.11564625850340136, 0.11564625850340136, 0.11564625850340136, 0.12244897959183673, 0.11564625850340136, 0.11564625850340136, 0.11564625850340136, 0.11564625850340136, 0.11564625850340136, 0.12244897959183673, 0.11564625850340136, 0.10884353741496598, 0.10884353741496598, 0.10204081632653061, 0.08163265306122448, 0.08163265306122448, 0.08163265306122448, 0.08163265306122448, 0.08163265306122448, 0.08163265306122448, 0.08163265306122448, 0.08163265306122448, 0.07482993197278912, 0.07482993197278912, 0.07482993197278912, 0.07482993197278912, 0.07482993197278912, 0.07482993197278912, 0.06802721088435375, 0.06802721088435375, 0.06802721088435375, 0.06802721088435375, 0.06802721088435375, 0.06802721088435375, 0.06802721088435375, 0.06802721088435375, 0.06802721088435375, 0.06802721088435375, 0.06802721088435375, 0.06802721088435375, 0.06802721088435375, 0.06802721088435375, 0.06802721088435375, 0.06802721088435375, 0.06802721088435375, 0.06802721088435375, 0.06802721088435375, 0.06802721088435375, 0.06802721088435375, 0.06802721088435375, 0.06802721088435375, 0.061224489795918366, 0.061224489795918366, 0.061224489795918366, 0.061224489795918366, 0.061224489795918366, 0.061224489795918366, 0.061224489795918366, 0.061224489795918366, 0.06802721088435375, 0.06802721088435375, 0.06802721088435375, 0.06802721088435375, 0.06802721088435375, 0.06802721088435375, 0.06802721088435375, 0.06802721088435375, 0.06802721088435375, 0.06802721088435375, 0.06802721088435375, 0.06802721088435375, 0.06802721088435375, 0.06802721088435375, 0.3469387755102041, 0.30612244897959184, 0.08163265306122448, 0.07482993197278912, 0.06802721088435375, 0.08163265306122448, 0.07482993197278912, 0.06802721088435375, 0.06802721088435375, 0.06802721088435375, 0.06802721088435375, 0.06802721088435375, 0.06802721088435375, 0.06802721088435375, 0.06802721088435375, 0.08843537414965986, 0.07482993197278912, 0.07482993197278912, 0.07482993197278912, 0.07482993197278912, 0.07482993197278912, 0.08163265306122448, 0.08163265306122448, 0.08163265306122448, 0.08163265306122448, 0.08163265306122448, 0.08163265306122448, 0.08163265306122448, 0.08163265306122448, 0.08843537414965986, 0.08843537414965986, 0.08163265306122448, 0.08163265306122448, 0.08163265306122448, 0.08163265306122448, 0.08163265306122448, 0.08163265306122448, 0.08163265306122448, 0.08163265306122448, 0.6258503401360545, 0.6938775510204082, 0.5986394557823129, 0.08163265306122448, 0.08163265306122448, 0.08163265306122448, 0.08163265306122448, 0.08163265306122448, 0.08163265306122448, 0.08163265306122448, 0.08163265306122448, 0.08163265306122448, 0.08163265306122448, 0.08163265306122448, 0.08163265306122448, 0.08163265306122448, 0.08843537414965986, 0.08843537414965986, 0.08843537414965986, 0.08163265306122448, 0.08163265306122448, 0.08163265306122448, 0.08163265306122448, 0.08163265306122448, 0.08163265306122448, 0.08163265306122448, 0.08163265306122448, 0.08163265306122448, 0.08163265306122448, 0.08163265306122448, 0.08163265306122448, 0.08163265306122448, 0.08163265306122448, 0.08163265306122448, 0.08163265306122448, 0.10884353741496598, 0.08843537414965986, 0.08163265306122448, 0.08163265306122448, 0.08163265306122448, 0.08843537414965986, 0.08843537414965986, 0.08843537414965986, 0.08843537414965986, 0.06802721088435375, 0.06802721088435375, 0.06802721088435375, 0.07482993197278912, 0.07482993197278912, 0.06802721088435375, 0.06802721088435375, 0.06802721088435375, 0.06802721088435375, 0.06802721088435375, 0.06802721088435375, 0.06802721088435375, 0.06802721088435375, 0.09523809523809523, 0.19047619047619047, 0.14965986394557823, 0.10884353741496598, 0.07482993197278912, 0.07482993197278912, 0.07482993197278912, 0.06802721088435375, 0.06802721088435375, 0.07482993197278912, 0.07482993197278912, 0.07482993197278912, 0.06802721088435375, 0.06802721088435375, 0.06802721088435375, 0.06802721088435375, 0.06802721088435375, 0.06802721088435375, 0.17006802721088435, 0.07482993197278912, 0.06802721088435375, 0.08843537414965986, 0.08163265306122448, 0.5102040816326531, 0.06802721088435375, 0.06802721088435375, 0.06802721088435375, 0.06802721088435375, 0.06802721088435375, 0.06802721088435375, 0.06802721088435375, 0.06802721088435375, 0.06802721088435375, 0.07482993197278912, 0.07482993197278912, 0.07482993197278912, 0.07482993197278912, 0.07482993197278912, 0.07482993197278912, 0.07482993197278912, 0.07482993197278912, 0.07482993197278912, 0.07482993197278912, 0.07482993197278912, 0.9115646258503401, 0.07482993197278912, 0.07482993197278912, 0.08163265306122448, 0.08843537414965986, 0.12244897959183673, 0.10884353741496598, 0.09523809523809523, 0.09523809523809523, 0.08843537414965986, 0.09523809523809523, 0.08843537414965986, 0.08163265306122448, 0.08163265306122448, 0.08163265306122448, 0.08843537414965986, 0.11564625850340136, 0.12244897959183673, 0.1292517006802721, 0.14965986394557823, 0.16326530612244897, 0.17006802721088435, 0.16326530612244897, 0.1564625850340136, 0.1360544217687075, 0.4965986394557823, 0.5170068027210885, 0.5374149659863946, 0.5918367346938775, 0.673469387755102, 0.7074829931972789, 0.7414965986394558, 0.7414965986394558, 0.7482993197278912, 0.8027210884353742, 0.8299319727891157, 0.8775510204081632, 0.9115646258503401, 0.9319727891156463, 0.9319727891156463, 0.9319727891156463, 0.9319727891156463, 0.9115646258503401, 0.9115646258503401, 0.8299319727891157, 0.8231292517006803, 0.782312925170068, 0.7482993197278912, 0.7414965986394558, 0.7346938775510204, 0.6870748299319728, 0.6258503401360545, 0.5714285714285714, 0.5170068027210885, 0.5034013605442177, 0.46938775510204084, 0.21768707482993196, 0.42857142857142855, 0.3129251700680272, 0.30612244897959184, 0.3129251700680272, 0.30612244897959184, 0.29931972789115646, 0.10204081632653061, 0.3741496598639456, 0.42857142857142855, 0.5238095238095238, 0.5510204081632653, 0.8435374149659864, 0.9455782312925171, 0.6054421768707483, 0.54421768707483, 0.46938775510204084, 0.42857142857142855, 0.3741496598639456, 0.08843537414965986, 0.061224489795918366, 0.061224489795918366, 0.061224489795918366, 0.061224489795918366, 0.061224489795918366, 0.061224489795918366, 0.061224489795918366, 0.08843537414965986, 0.08163265306122448, 0.061224489795918366, 0.061224489795918366, 0.061224489795918366, 0.061224489795918366, 0.061224489795918366, 0.061224489795918366, 0.061224489795918366, 0.061224489795918366, 0.061224489795918366, 0.061224489795918366, 0.061224489795918366, 0.06802721088435375, 0.061224489795918366, 0.061224489795918366, 0.061224489795918366, 0.061224489795918366, 0.061224489795918366, 0.061224489795918366, 0.061224489795918366, 0.061224489795918366, 0.061224489795918366, 0.05442176870748299, 0.05442176870748299, 0.05442176870748299, 0.05442176870748299, 0.05442176870748299, 0.05442176870748299, 0.05442176870748299, 0.05442176870748299, 0.05442176870748299, 0.05442176870748299, 0.05442176870748299, 0.05442176870748299, 0.05442176870748299, 0.05442176870748299, 0.05442176870748299, 0.05442176870748299, 0.05442176870748299, 0.05442176870748299, 0.05442176870748299, 0.05442176870748299, 0.8775510204081632, 0.8775510204081632, 0.9183673469387755, 0.9183673469387755, 0.891156462585034, 0.8775510204081632, 0.8775510204081632, 0.05442176870748299, 0.06802721088435375, 0.06802721088435375, 0.06802721088435375, 0.07482993197278912, 0.07482993197278912, 0.07482993197278912, 0.07482993197278912, 0.07482993197278912, 0.07482993197278912, 0.07482993197278912, 0.07482993197278912, 0.07482993197278912, 0.07482993197278912, 0.07482993197278912, 0.1292517006802721], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF772.gap.json b/pfam_gap_rates/DUF772.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..6c381cde60dedd27f2b21135c4b435ca2aba6738
--- /dev/null
+++ b/pfam_gap_rates/DUF772.gap.json
@@ -0,0 +1 @@
+{"family": "DUF772", "n_seqs": 2036, "length": 79, "gap_rates": [0.21168958742632613, 0.1738703339882122, 0.1444007858546169, 0.12573673870333987, 0.10117878192534381, 0.09430255402750491, 0.08988212180746562, 0.08742632612966601, 0.08153241650294696, 0.05353634577603143, 0.05206286836935167, 0.05009823182711198, 0.04616895874263261, 0.04420432220039293, 0.04273084479371316, 0.03929273084479371, 0.03880157170923379, 0.03831041257367387, 0.03683693516699411, 0.03536345776031434, 0.032907662082514735, 0.03241650294695481, 0.4724950884086444, 0.027013752455795677, 0.023084479371316306, 0.021611001964636542, 0.02111984282907662, 0.018664047151277015, 0.02013752455795678, 0.02406679764243615, 0.026031434184675836, 0.026522593320235755, 0.0275049115913556, 0.028978388998035363, 0.032907662082514735, 0.03388998035363458, 0.03487229862475442, 0.03585461689587426, 0.03192534381139489, 0.03536345776031434, 0.03732809430255403, 0.039783889980353634, 0.043713163064833006, 0.2868369351669941, 0.33840864440078583, 0.34970530451866405, 0.3781925343811395, 0.7573673870333988, 0.8885068762278978, 0.07514734774066797, 0.07170923379174853, 0.06630648330058939, 0.06728880157170923, 0.07072691552062868, 0.07170923379174853, 0.07318271119842829, 0.07514734774066797, 0.07809430255402751, 0.08202357563850687, 0.08447937131630648, 0.08546168958742632, 0.08840864440078586, 0.09479371316306483, 0.7966601178781926, 0.1006876227897839, 0.10805500982318271, 0.12278978388998035, 0.13261296660117877, 0.3835952848722986, 0.5663064833005894, 0.17829076620825146, 0.17337917485265225, 0.22986247544204322, 0.24607072691552062, 0.275049115913556, 0.3256385068762279, 0.4120825147347741, 0.5368369351669942, 0.8109037328094303], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF834.gap.json b/pfam_gap_rates/DUF834.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..fb0537423239789b98f522072c7b76cab60038e1
--- /dev/null
+++ b/pfam_gap_rates/DUF834.gap.json
@@ -0,0 +1 @@
+{"family": "DUF834", "n_seqs": 419, "length": 70, "gap_rates": [0.5560859188544153, 0.5202863961813843, 0.46539379474940334, 0.44630071599045346, 0.4128878281622912, 0.3914081145584726, 0.360381861575179, 0.35083532219570407, 0.324582338902148, 0.3054892601431981, 0.2720763723150358, 0.2458233890214797, 0.21479713603818615, 0.1957040572792363, 0.17899761336515513, 0.18377088305489261, 0.6181384248210023, 0.60381861575179, 0.5799522673031027, 0.5656324582338902, 0.9307875894988067, 0.9045346062052506, 0.12649164677804295, 0.10739856801909307, 0.1026252983293556, 0.10023866348448687, 0.09069212410501193, 0.0883054892601432, 0.08591885441527446, 0.08591885441527446, 0.07398568019093078, 0.06682577565632458, 0.0477326968973747, 0.04295942720763723, 0.0405727923627685, 0.03818615751789976, 0.03341288782816229, 0.028639618138424822, 0.014319809069212411, 0.011933174224343675, 0.011933174224343675, 0.014319809069212411, 0.00477326968973747, 0.00477326968973747, 0.007159904534606206, 0.007159904534606206, 0.007159904534606206, 0.007159904534606206, 0.014319809069212411, 0.02386634844868735, 0.02386634844868735, 0.026252983293556086, 0.02386634844868735, 0.026252983293556086, 0.026252983293556086, 0.026252983293556086, 0.026252983293556086, 0.028639618138424822, 0.031026252983293555, 0.03579952267303103, 0.04295942720763723, 0.045346062052505964, 0.059665871121718374, 0.06682577565632458, 0.07398568019093078, 0.10501193317422435, 0.13365155131264916, 0.17899761336515513, 0.21479713603818615, 0.3054892601431981], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF872.gap.json b/pfam_gap_rates/DUF872.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d773334e93631cf50d68200e476351e2db1e3a14
--- /dev/null
+++ b/pfam_gap_rates/DUF872.gap.json
@@ -0,0 +1 @@
+{"family": "DUF872", "n_seqs": 223, "length": 128, "gap_rates": [0.9417040358744395, 0.9282511210762332, 0.8834080717488789, 0.8654708520179372, 0.8565022421524664, 0.852017937219731, 0.8654708520179372, 0.820627802690583, 0.8161434977578476, 0.8026905829596412, 0.7982062780269058, 0.7982062780269058, 0.7892376681614349, 0.7892376681614349, 0.7399103139013453, 0.9147982062780269, 0.7174887892376681, 0.7040358744394619, 0.6995515695067265, 0.6816143497757847, 0.6591928251121076, 0.6591928251121076, 0.6457399103139013, 0.6322869955156951, 0.6322869955156951, 0.6188340807174888, 0.6098654708520179, 0.6098654708520179, 0.6188340807174888, 0.7130044843049327, 0.7757847533632287, 0.695067264573991, 0.6636771300448431, 0.7802690582959642, 0.8251121076233184, 0.852017937219731, 0.7982062780269058, 0.7713004484304933, 0.5829596412556054, 0.5560538116591929, 0.5426008968609866, 0.5381165919282511, 0.547085201793722, 0.5919282511210763, 0.5739910313901345, 0.47085201793721976, 0.4439461883408072, 0.3273542600896861, 0.13452914798206278, 0.09865470852017937, 0.09865470852017937, 0.09417040358744394, 0.08968609865470852, 0.08520179372197309, 0.08520179372197309, 0.08520179372197309, 0.08520179372197309, 0.08520179372197309, 0.08520179372197309, 0.08968609865470852, 0.08968609865470852, 0.08968609865470852, 0.08968609865470852, 0.08968609865470852, 0.09417040358744394, 0.08968609865470852, 0.08520179372197309, 0.08520179372197309, 0.08520179372197309, 0.08071748878923767, 0.08071748878923767, 0.08071748878923767, 0.08520179372197309, 0.08968609865470852, 0.08520179372197309, 0.08968609865470852, 0.8834080717488789, 0.9103139013452914, 0.8026905829596412, 0.09865470852017937, 0.08520179372197309, 0.06278026905829596, 0.053811659192825115, 0.04484304932735426, 0.04484304932735426, 0.04932735426008968, 0.8878923766816144, 0.02242152466367713, 0.013452914798206279, 0.6278026905829597, 0.9327354260089686, 0.4977578475336323, 0.026905829596412557, 0.017937219730941704, 0.017937219730941704, 0.017937219730941704, 0.017937219730941704, 0.017937219730941704, 0.017937219730941704, 0.02242152466367713, 0.013452914798206279, 0.013452914798206279, 0.013452914798206279, 0.013452914798206279, 0.02242152466367713, 0.026905829596412557, 0.026905829596412557, 0.03139013452914798, 0.03139013452914798, 0.03139013452914798, 0.03587443946188341, 0.03587443946188341, 0.03587443946188341, 0.03587443946188341, 0.03587443946188341, 0.04484304932735426, 0.04932735426008968, 0.05829596412556054, 0.06278026905829596, 0.07174887892376682, 0.07623318385650224, 0.08071748878923767, 0.08520179372197309, 0.09417040358744394, 0.09865470852017937, 0.12556053811659193, 0.29596412556053814, 0.3901345291479821], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF945.gap.json b/pfam_gap_rates/DUF945.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..36d5e6b9f71f9c2f6f0665f8221230082bf49886
--- /dev/null
+++ b/pfam_gap_rates/DUF945.gap.json
@@ -0,0 +1 @@
+{"family": "DUF945", "n_seqs": 181, "length": 566, "gap_rates": [0.46408839779005523, 0.35911602209944754, 0.30939226519337015, 0.4088397790055249, 0.4585635359116022, 0.8342541436464088, 0.3370165745856354, 0.24861878453038674, 0.2265193370165746, 0.2154696132596685, 0.20994475138121546, 0.19889502762430938, 0.19889502762430938, 0.19337016574585636, 0.18232044198895028, 0.18232044198895028, 0.22099447513812154, 0.281767955801105, 0.3370165745856354, 0.2983425414364641, 0.2541436464088398, 0.18232044198895028, 0.17679558011049723, 0.1712707182320442, 0.16574585635359115, 0.16022099447513813, 0.16022099447513813, 0.15469613259668508, 0.15469613259668508, 0.15469613259668508, 0.15469613259668508, 0.15469613259668508, 0.15469613259668508, 0.15469613259668508, 0.14917127071823205, 0.14917127071823205, 0.143646408839779, 0.143646408839779, 0.143646408839779, 0.143646408839779, 0.14917127071823205, 0.143646408839779, 0.143646408839779, 0.143646408839779, 0.2154696132596685, 0.16574585635359115, 0.14917127071823205, 0.15469613259668508, 0.14917127071823205, 0.143646408839779, 0.143646408839779, 0.1712707182320442, 0.6464088397790055, 0.7071823204419889, 0.7348066298342542, 0.8066298342541437, 0.9337016574585635, 0.9337016574585635, 0.8011049723756906, 0.7182320441988951, 0.7016574585635359, 0.1712707182320442, 0.15469613259668508, 0.14917127071823205, 0.14917127071823205, 0.14917127071823205, 0.14917127071823205, 0.14917127071823205, 0.14917127071823205, 0.14917127071823205, 0.14917127071823205, 0.14917127071823205, 0.14917127071823205, 0.14917127071823205, 0.14917127071823205, 0.14917127071823205, 0.14917127071823205, 0.6795580110497238, 0.8011049723756906, 0.8176795580110497, 0.8287292817679558, 0.9281767955801105, 0.9447513812154696, 0.8397790055248618, 0.8287292817679558, 0.8066298342541437, 0.7458563535911602, 0.6022099447513812, 0.5359116022099447, 0.5359116022099447, 0.5138121546961326, 0.425414364640884, 0.35911602209944754, 0.30386740331491713, 0.23756906077348067, 0.19889502762430938, 0.1878453038674033, 0.16574585635359115, 0.16022099447513813, 0.16022099447513813, 0.16022099447513813, 0.16022099447513813, 0.16022099447513813, 0.16574585635359115, 0.16574585635359115, 0.16022099447513813, 0.16022099447513813, 0.16022099447513813, 0.16022099447513813, 0.16022099447513813, 0.16022099447513813, 0.16022099447513813, 0.20994475138121546, 0.2430939226519337, 0.2265193370165746, 0.2265193370165746, 0.2265193370165746, 0.23756906077348067, 0.2541436464088398, 0.7569060773480663, 0.7292817679558011, 0.6685082872928176, 0.574585635359116, 0.5414364640883977, 0.5414364640883977, 0.40331491712707185, 0.34806629834254144, 0.3370165745856354, 0.287292817679558, 0.27071823204419887, 0.2541436464088398, 0.2596685082872928, 0.18232044198895028, 0.1878453038674033, 0.1878453038674033, 0.17679558011049723, 0.17679558011049723, 0.9392265193370166, 0.24861878453038674, 0.2265193370165746, 0.2154696132596685, 0.2154696132596685, 0.24861878453038674, 0.23204419889502761, 0.22099447513812154, 0.20994475138121546, 0.2430939226519337, 0.287292817679558, 0.27071823204419887, 0.2430939226519337, 0.8950276243093923, 0.9392265193370166, 0.6408839779005525, 0.24861878453038674, 0.26519337016574585, 0.2265193370165746, 0.2154696132596685, 0.1712707182320442, 0.8674033149171271, 0.22099447513812154, 0.16574585635359115, 0.16022099447513813, 0.15469613259668508, 0.15469613259668508, 0.15469613259668508, 0.15469613259668508, 0.143646408839779, 0.143646408839779, 0.143646408839779, 0.143646408839779, 0.143646408839779, 0.143646408839779, 0.143646408839779, 0.143646408839779, 0.143646408839779, 0.143646408839779, 0.143646408839779, 0.143646408839779, 0.143646408839779, 0.143646408839779, 0.143646408839779, 0.143646408839779, 0.143646408839779, 0.8121546961325967, 0.9337016574585635, 0.8895027624309392, 0.7348066298342542, 0.1878453038674033, 0.19889502762430938, 0.1878453038674033, 0.15469613259668508, 0.8729281767955801, 0.7624309392265194, 0.13812154696132597, 0.13812154696132597, 0.13812154696132597, 0.13812154696132597, 0.1712707182320442, 0.1712707182320442, 0.143646408839779, 0.13812154696132597, 0.1270718232044199, 0.13259668508287292, 0.13259668508287292, 0.13259668508287292, 0.13259668508287292, 0.15469613259668508, 0.15469613259668508, 0.9447513812154696, 0.8784530386740331, 0.281767955801105, 0.23204419889502761, 0.18232044198895028, 0.13259668508287292, 0.1270718232044199, 0.1270718232044199, 0.11602209944751381, 0.11602209944751381, 0.11602209944751381, 0.10497237569060773, 0.10497237569060773, 0.10497237569060773, 0.10497237569060773, 0.10497237569060773, 0.10497237569060773, 0.10497237569060773, 0.10497237569060773, 0.12154696132596685, 0.13812154696132597, 0.143646408839779, 0.44751381215469616, 0.7569060773480663, 0.8453038674033149, 0.9447513812154696, 0.7790055248618785, 0.6740331491712708, 0.12154696132596685, 0.12154696132596685, 0.11602209944751381, 0.09944751381215469, 0.09944751381215469, 0.09944751381215469, 0.09944751381215469, 0.09944751381215469, 0.09944751381215469, 0.09944751381215469, 0.09944751381215469, 0.09944751381215469, 0.09944751381215469, 0.09944751381215469, 0.11049723756906077, 0.11049723756906077, 0.18232044198895028, 0.15469613259668508, 0.16574585635359115, 0.14917127071823205, 0.1712707182320442, 0.9171270718232044, 0.14917127071823205, 0.16022099447513813, 0.17679558011049723, 0.8784530386740331, 0.9226519337016574, 0.8287292817679558, 0.13812154696132597, 0.13259668508287292, 0.1270718232044199, 0.9392265193370166, 0.9447513812154696, 0.9447513812154696, 0.9447513812154696, 0.9226519337016574, 0.12154696132596685, 0.1270718232044199, 0.1270718232044199, 0.12154696132596685, 0.1270718232044199, 0.1270718232044199, 0.1270718232044199, 0.1270718232044199, 0.1270718232044199, 0.1270718232044199, 0.1270718232044199, 0.1270718232044199, 0.1270718232044199, 0.143646408839779, 0.14917127071823205, 0.9447513812154696, 0.9447513812154696, 0.9447513812154696, 0.9447513812154696, 0.9447513812154696, 0.9447513812154696, 0.9447513812154696, 0.9447513812154696, 0.17679558011049723, 0.23756906077348067, 0.7900552486187845, 0.856353591160221, 0.9116022099447514, 0.8950276243093923, 0.8287292817679558, 0.6464088397790055, 0.12154696132596685, 0.12154696132596685, 0.12154696132596685, 0.12154696132596685, 0.12154696132596685, 0.1270718232044199, 0.1270718232044199, 0.13812154696132597, 0.8287292817679558, 0.8066298342541437, 0.1270718232044199, 0.1270718232044199, 0.1270718232044199, 0.12154696132596685, 0.12154696132596685, 0.12154696132596685, 0.12154696132596685, 0.1270718232044199, 0.8784530386740331, 0.12154696132596685, 0.11602209944751381, 0.11602209944751381, 0.11602209944751381, 0.11602209944751381, 0.1270718232044199, 0.12154696132596685, 0.12154696132596685, 0.1270718232044199, 0.143646408839779, 0.12154696132596685, 0.13259668508287292, 0.12154696132596685, 0.12154696132596685, 0.12154696132596685, 0.856353591160221, 0.8895027624309392, 0.8674033149171271, 0.8176795580110497, 0.13812154696132597, 0.13259668508287292, 0.13259668508287292, 0.13259668508287292, 0.13812154696132597, 0.13812154696132597, 0.12154696132596685, 0.12154696132596685, 0.12154696132596685, 0.12154696132596685, 0.12154696132596685, 0.12154696132596685, 0.12154696132596685, 0.12154696132596685, 0.143646408839779, 0.13259668508287292, 0.13259668508287292, 0.13259668508287292, 0.13259668508287292, 0.13259668508287292, 0.13259668508287292, 0.13259668508287292, 0.13812154696132597, 0.143646408839779, 0.143646408839779, 0.14917127071823205, 0.14917127071823205, 0.143646408839779, 0.143646408839779, 0.14917127071823205, 0.1712707182320442, 0.18232044198895028, 0.2265193370165746, 0.281767955801105, 0.32044198895027626, 0.36464088397790057, 0.585635359116022, 0.6740331491712708, 0.7734806629834254, 0.8176795580110497, 0.8895027624309392, 0.9337016574585635, 0.9447513812154696, 0.9392265193370166, 0.9226519337016574, 0.856353591160221, 0.8121546961325967, 0.7348066298342542, 0.44751381215469616, 0.4143646408839779, 0.3701657458563536, 0.34806629834254144, 0.30386740331491713, 0.281767955801105, 0.23204419889502761, 0.2265193370165746, 0.22099447513812154, 0.20994475138121546, 0.1878453038674033, 0.15469613259668508, 0.15469613259668508, 0.15469613259668508, 0.15469613259668508, 0.15469613259668508, 0.16022099447513813, 0.16574585635359115, 0.16574585635359115, 0.16022099447513813, 0.16022099447513813, 0.16574585635359115, 0.16574585635359115, 0.16022099447513813, 0.16022099447513813, 0.1712707182320442, 0.17679558011049723, 0.17679558011049723, 0.16022099447513813, 0.16022099447513813, 0.1712707182320442, 0.20994475138121546, 0.16574585635359115, 0.1712707182320442, 0.16574585635359115, 0.16022099447513813, 0.16574585635359115, 0.1712707182320442, 0.17679558011049723, 0.17679558011049723, 0.17679558011049723, 0.17679558011049723, 0.17679558011049723, 0.17679558011049723, 0.17679558011049723, 0.17679558011049723, 0.17679558011049723, 0.17679558011049723, 0.17679558011049723, 0.18232044198895028, 0.8121546961325967, 0.8895027624309392, 0.9392265193370166, 0.856353591160221, 0.7513812154696132, 0.6464088397790055, 0.5966850828729282, 0.36464088397790057, 0.30939226519337015, 0.287292817679558, 0.23756906077348067, 0.2154696132596685, 0.20994475138121546, 0.20441988950276244, 0.20441988950276244, 0.19889502762430938, 0.19889502762430938, 0.19889502762430938, 0.19889502762430938, 0.19889502762430938, 0.20441988950276244, 0.19889502762430938, 0.20994475138121546, 0.20441988950276244, 0.3867403314917127, 0.3867403314917127, 0.20441988950276244, 0.19889502762430938, 0.19889502762430938, 0.19889502762430938, 0.19889502762430938, 0.19889502762430938, 0.19889502762430938, 0.19889502762430938, 0.19889502762430938, 0.20441988950276244, 0.19889502762430938, 0.19889502762430938, 0.20441988950276244, 0.19337016574585636, 0.20441988950276244, 0.20441988950276244, 0.2154696132596685, 0.26519337016574585, 0.287292817679558, 0.569060773480663, 0.4419889502762431, 0.430939226519337, 0.430939226519337, 0.4088397790055249, 0.4143646408839779, 0.425414364640884, 0.44751381215469616, 0.7403314917127072, 0.7679558011049724, 0.7955801104972375, 0.856353591160221, 0.8839779005524862, 0.9171270718232044, 0.9281767955801105, 0.9392265193370166, 0.9392265193370166, 0.9392265193370166, 0.9392265193370166, 0.9392265193370166, 0.9337016574585635, 0.9281767955801105, 0.9060773480662984, 0.8839779005524862, 0.8176795580110497, 0.7679558011049724, 0.7458563535911602, 0.7292817679558011, 0.574585635359116, 0.580110497237569, 0.5580110497237569, 0.5524861878453039, 0.5469613259668509, 0.5414364640883977, 0.5359116022099447, 0.5193370165745856, 0.49171270718232046, 0.4696132596685083, 0.4198895027624309, 0.3425414364640884, 0.30939226519337015, 0.2430939226519337, 0.2154696132596685, 0.19889502762430938, 0.1878453038674033, 0.1878453038674033, 0.1878453038674033, 0.1878453038674033, 0.1878453038674033, 0.1878453038674033, 0.1878453038674033, 0.1878453038674033, 0.1878453038674033, 0.1878453038674033, 0.1878453038674033, 0.1878453038674033, 0.1878453038674033, 0.1878453038674033, 0.1878453038674033, 0.9447513812154696, 0.19337016574585636, 0.19337016574585636, 0.19337016574585636, 0.1878453038674033, 0.1878453038674033, 0.1878453038674033, 0.1878453038674033, 0.19337016574585636, 0.20441988950276244, 0.20441988950276244, 0.20441988950276244, 0.20994475138121546, 0.2154696132596685, 0.22099447513812154, 0.22099447513812154, 0.22099447513812154, 0.2265193370165746, 0.26519337016574585, 0.30386740331491713, 0.39226519337016574, 0.5524861878453039, 0.8453038674033149], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF997.gap.json b/pfam_gap_rates/DUF997.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..fb1eb00c1a2ce53e70618ab7c4769341ae7f96bf
--- /dev/null
+++ b/pfam_gap_rates/DUF997.gap.json
@@ -0,0 +1 @@
+{"family": "DUF997", "n_seqs": 132, "length": 77, "gap_rates": [0.30303030303030304, 0.09848484848484848, 0.08333333333333333, 0.06818181818181818, 0.06060606060606061, 0.06060606060606061, 0.05303030303030303, 0.045454545454545456, 0.022727272727272728, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.2196969696969697, 0.2196969696969697, 0.22727272727272727, 0.25757575757575757, 0.2196969696969697, 0.19696969696969696, 0.17424242424242425, 0.44696969696969696, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.007575757575757576, 0.03787878787878788, 0.007575757575757576, 0.007575757575757576, 0.007575757575757576, 0.007575757575757576, 0.007575757575757576, 0.007575757575757576, 0.007575757575757576, 0.007575757575757576, 0.007575757575757576, 0.015151515151515152, 0.03787878787878788, 0.030303030303030304, 0.045454545454545456, 0.045454545454545456, 0.05303030303030303, 0.06060606060606061, 0.06818181818181818, 0.09090909090909091, 0.09090909090909091, 0.09090909090909091, 0.10606060606060606, 0.19696969696969696, 0.3333333333333333, 0.75], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Dabb.gap.json b/pfam_gap_rates/Dabb.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e2978179429791a691b7808375ddea5f24de119b
--- /dev/null
+++ b/pfam_gap_rates/Dabb.gap.json
@@ -0,0 +1 @@
+{"family": "Dabb", "n_seqs": 1257, "length": 115, "gap_rates": [0.2744630071599045, 0.15194908512330946, 0.08989657915672236, 0.07875894988066826, 0.06762132060461416, 0.05807478122513922, 0.056483691328560064, 0.05568814638027048, 0.0588703261734288, 0.05807478122513922, 0.05807478122513922, 0.05489260143198091, 0.05409705648369133, 0.05568814638027048, 0.05250596658711217, 0.05171042163882259, 0.05091487669053302, 0.046937151949085126, 0.9355608591885441, 0.20445505171042164, 0.1511535401750199, 0.14478918058870327, 0.8496420047732697, 0.8933969769291965, 0.8719172633253779, 0.8392999204455052, 0.046141607000795545, 0.03977724741447892, 0.03898170246618934, 0.03898170246618934, 0.03739061256961018, 0.03818615751789976, 0.03579952267303103, 0.8385043754972156, 0.8599840891010342, 0.9101034208432777, 0.9236276849642004, 0.8711217183770883, 0.8520286396181385, 0.8329355608591885, 0.19888623707239458, 0.04455051710421639, 0.03420843277645187, 0.0294351630867144, 0.026252983293556086, 0.026252983293556086, 0.031821797931583136, 0.024661893396976928, 0.020684168655529037, 0.01988862370723946, 0.017501988862370723, 0.015910898965791568, 0.015115354017501989, 0.014319809069212411, 0.016706443914081145, 0.016706443914081145, 0.02386634844868735, 0.023070803500397773, 0.022275258552108195, 0.03420843277645187, 0.8838504375497216, 0.9355608591885441, 0.8241845664280032, 0.5505171042163882, 0.4128878281622912, 0.14558472553699284, 0.03341288782816229, 0.00954653937947494, 0.007955449482895784, 0.007955449482895784, 0.008750994431185362, 0.008750994431185362, 0.007955449482895784, 0.007159904534606206, 0.007159904534606206, 0.006364359586316627, 0.005568814638027049, 0.007955449482895784, 0.007159904534606206, 0.006364359586316627, 0.006364359586316627, 0.007955449482895784, 0.008750994431185362, 0.00954653937947494, 0.011137629276054098, 0.011137629276054098, 0.011137629276054098, 0.8910103420843277, 0.013524264120922832, 0.013524264120922832, 0.013524264120922832, 0.014319809069212411, 0.014319809069212411, 0.018297533810660304, 0.01909307875894988, 0.01909307875894988, 0.7326968973747017, 0.024661893396976928, 0.026252983293556086, 0.028639618138424822, 0.03420843277645187, 0.0405727923627685, 0.05091487669053302, 0.06841686555290374, 0.10023866348448687, 0.9466984884645983, 0.09466984884645982, 0.10103420843277645, 0.10421638822593476, 0.11694510739856802, 0.12569610182975338, 0.1424025457438345, 0.1614956245027844, 0.31821797931583135, 0.8687350835322196], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Death.gap.json b/pfam_gap_rates/Death.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..030efcfe553f66f950c7b77e3904d1ae36089c58
--- /dev/null
+++ b/pfam_gap_rates/Death.gap.json
@@ -0,0 +1 @@
+{"family": "Death", "n_seqs": 1530, "length": 91, "gap_rates": [0.8823529411764706, 0.7169934640522876, 0.5333333333333333, 0.4143790849673203, 0.3908496732026144, 0.34444444444444444, 0.3026143790849673, 0.2803921568627451, 0.2522875816993464, 0.21830065359477124, 0.5699346405228758, 0.5431372549019607, 0.4888888888888889, 0.3790849673202614, 0.26601307189542484, 0.047058823529411764, 0.030065359477124184, 0.020261437908496733, 0.01568627450980392, 0.013071895424836602, 0.01045751633986928, 0.009150326797385621, 0.00784313725490196, 0.0058823529411764705, 0.0058823529411764705, 0.9464052287581699, 0.00392156862745098, 0.004575163398692811, 0.004575163398692811, 0.004575163398692811, 0.004575163398692811, 0.16470588235294117, 0.00849673202614379, 0.006535947712418301, 0.0058823529411764705, 0.00522875816993464, 0.004575163398692811, 0.00718954248366013, 0.00522875816993464, 0.00522875816993464, 0.8973856209150327, 0.5627450980392157, 0.29411764705882354, 0.25163398692810457, 0.21764705882352942, 0.19215686274509805, 0.00392156862745098, 0.00196078431372549, 0.0032679738562091504, 0.00196078431372549, 0.00196078431372549, 0.00196078431372549, 0.00196078431372549, 0.00196078431372549, 0.00261437908496732, 0.00392156862745098, 0.0058823529411764705, 0.00522875816993464, 0.10457516339869281, 0.23071895424836603, 0.238562091503268, 0.8849673202614379, 0.9366013071895425, 0.8052287581699347, 0.02875816993464052, 0.02287581699346405, 0.01699346405228758, 0.01241830065359477, 0.011764705882352941, 0.02091503267973856, 0.01437908496732026, 0.013725490196078431, 0.015032679738562092, 0.01764705882352941, 0.018300653594771243, 0.0196078431372549, 0.024183006535947713, 0.03398692810457516, 0.045098039215686274, 0.05032679738562092, 0.05816993464052288, 0.06601307189542484, 0.07777777777777778, 0.10326797385620914, 0.11568627450980393, 0.14183006535947712, 0.169281045751634, 0.20588235294117646, 0.31699346405228757, 0.4973856209150327, 0.8176470588235294], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Destabilase.gap.json b/pfam_gap_rates/Destabilase.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..4ced3e56ab44aefa0ca24a438b0cbdeb2958abb6
--- /dev/null
+++ b/pfam_gap_rates/Destabilase.gap.json
@@ -0,0 +1 @@
+{"family": "Destabilase", "n_seqs": 128, "length": 127, "gap_rates": [0.171875, 0.109375, 0.109375, 0.1015625, 0.1015625, 0.1015625, 0.0859375, 0.078125, 0.078125, 0.0703125, 0.0625, 0.0625, 0.078125, 0.0625, 0.0703125, 0.40625, 0.90625, 0.0546875, 0.0546875, 0.0703125, 0.078125, 0.078125, 0.0859375, 0.4296875, 0.546875, 0.796875, 0.5234375, 0.203125, 0.453125, 0.0859375, 0.078125, 0.0703125, 0.0625, 0.046875, 0.046875, 0.046875, 0.0546875, 0.046875, 0.046875, 0.046875, 0.046875, 0.046875, 0.046875, 0.046875, 0.0390625, 0.0390625, 0.0390625, 0.5, 0.9453125, 0.6171875, 0.4765625, 0.09375, 0.171875, 0.171875, 0.1484375, 0.7578125, 0.7265625, 0.125, 0.125, 0.09375, 0.0625, 0.0625, 0.0625, 0.0625, 0.0625, 0.0625, 0.0625, 0.0625, 0.0625, 0.0625, 0.0625, 0.0625, 0.0625, 0.0625, 0.0546875, 0.0546875, 0.0546875, 0.0546875, 0.078125, 0.078125, 0.0859375, 0.0859375, 0.0859375, 0.09375, 0.1015625, 0.09375, 0.1015625, 0.109375, 0.109375, 0.2890625, 0.3046875, 0.1328125, 0.109375, 0.109375, 0.109375, 0.109375, 0.109375, 0.1171875, 0.1171875, 0.1171875, 0.1171875, 0.1171875, 0.1171875, 0.1171875, 0.1171875, 0.125, 0.125, 0.1328125, 0.171875, 0.125, 0.375, 0.1796875, 0.1796875, 0.2109375, 0.5390625, 0.5390625, 0.484375, 0.2265625, 0.2265625, 0.2265625, 0.2265625, 0.234375, 0.2421875, 0.2421875, 0.265625, 0.28125, 0.40625], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DevR.gap.json b/pfam_gap_rates/DevR.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..3b0084352e85c77cc3f1623413ac9401b354e986
--- /dev/null
+++ b/pfam_gap_rates/DevR.gap.json
@@ -0,0 +1 @@
+{"family": "DevR", "n_seqs": 169, "length": 369, "gap_rates": [0.8047337278106509, 0.4437869822485207, 0.41420118343195267, 0.40236686390532544, 0.38461538461538464, 0.35502958579881655, 0.3431952662721893, 0.3136094674556213, 0.27218934911242604, 0.21893491124260356, 0.20118343195266272, 0.23076923076923078, 0.16568047337278108, 0.16568047337278108, 0.16568047337278108, 0.15976331360946747, 0.15384615384615385, 0.15976331360946747, 0.14792899408284024, 0.8698224852071006, 0.13609467455621302, 0.1301775147928994, 0.1301775147928994, 0.1301775147928994, 0.1301775147928994, 0.11834319526627218, 0.11834319526627218, 0.1242603550295858, 0.1301775147928994, 0.3727810650887574, 0.7159763313609467, 0.7218934911242604, 0.7159763313609467, 0.7218934911242604, 0.7869822485207101, 0.8875739644970414, 0.863905325443787, 0.11242603550295859, 0.09467455621301775, 0.08284023668639054, 0.08284023668639054, 0.08284023668639054, 0.08284023668639054, 0.08284023668639054, 0.0650887573964497, 0.05325443786982249, 0.05325443786982249, 0.05325443786982249, 0.047337278106508875, 0.047337278106508875, 0.047337278106508875, 0.047337278106508875, 0.047337278106508875, 0.047337278106508875, 0.0650887573964497, 0.0650887573964497, 0.07100591715976332, 0.07692307692307693, 0.0650887573964497, 0.07100591715976332, 0.07692307692307693, 0.07100591715976332, 0.07100591715976332, 0.07100591715976332, 0.05917159763313609, 0.0650887573964497, 0.9408284023668639, 0.5266272189349113, 0.4911242603550296, 0.4319526627218935, 0.378698224852071, 0.38461538461538464, 0.3905325443786982, 0.3727810650887574, 0.20118343195266272, 0.13609467455621302, 0.15976331360946747, 0.46153846153846156, 0.4556213017751479, 0.4319526627218935, 0.378698224852071, 0.20118343195266272, 0.17159763313609466, 0.1301775147928994, 0.14201183431952663, 0.11834319526627218, 0.1301775147928994, 0.1242603550295858, 0.591715976331361, 0.621301775147929, 0.6331360946745562, 0.7218934911242604, 0.727810650887574, 0.7396449704142012, 0.7751479289940828, 0.8284023668639053, 0.8816568047337278, 0.8875739644970414, 0.9053254437869822, 0.9349112426035503, 0.9467455621301775, 0.9467455621301775, 0.9289940828402367, 0.893491124260355, 0.8875739644970414, 0.8757396449704142, 0.8165680473372781, 0.6982248520710059, 0.6627218934911243, 0.621301775147929, 0.5562130177514792, 0.41420118343195267, 0.10650887573964497, 0.09467455621301775, 0.07692307692307693, 0.0650887573964497, 0.0650887573964497, 0.07692307692307693, 0.05917159763313609, 0.029585798816568046, 0.029585798816568046, 0.09467455621301775, 0.0650887573964497, 0.0650887573964497, 0.0650887573964497, 0.0, 0.0, 0.0, 0.0, 0.005917159763313609, 0.8579881656804734, 0.8698224852071006, 0.8816568047337278, 0.8816568047337278, 0.8875739644970414, 0.8875739644970414, 0.8875739644970414, 0.893491124260355, 0.9053254437869822, 0.9230769230769231, 0.9289940828402367, 0.9230769230769231, 0.8994082840236687, 0.8875739644970414, 0.8875739644970414, 0.8875739644970414, 0.8875739644970414, 0.8816568047337278, 0.8757396449704142, 0.8698224852071006, 0.8520710059171598, 0.0, 0.15976331360946747, 0.1301775147928994, 0.07692307692307693, 0.20710059171597633, 0.11242603550295859, 0.7455621301775148, 0.7633136094674556, 0.8579881656804734, 0.9467455621301775, 0.9467455621301775, 0.9171597633136095, 0.8284023668639053, 0.7633136094674556, 0.5207100591715976, 0.023668639053254437, 0.005917159763313609, 0.005917159763313609, 0.005917159763313609, 0.005917159763313609, 0.005917159763313609, 0.005917159763313609, 0.005917159763313609, 0.011834319526627219, 0.01775147928994083, 0.01775147928994083, 0.01775147928994083, 0.011834319526627219, 0.011834319526627219, 0.011834319526627219, 0.011834319526627219, 0.011834319526627219, 0.011834319526627219, 0.011834319526627219, 0.6153846153846154, 0.7100591715976331, 0.7218934911242604, 0.9171597633136095, 0.9349112426035503, 0.8461538461538461, 0.11242603550295859, 0.03550295857988166, 0.029585798816568046, 0.023668639053254437, 0.029585798816568046, 0.04142011834319527, 0.029585798816568046, 0.011834319526627219, 0.011834319526627219, 0.01775147928994083, 0.15976331360946747, 0.8520710059171598, 0.8698224852071006, 0.9112426035502958, 0.9408284023668639, 0.9467455621301775, 0.9349112426035503, 0.8757396449704142, 0.863905325443787, 0.8402366863905325, 0.6686390532544378, 0.6272189349112426, 0.6272189349112426, 0.6094674556213018, 0.5443786982248521, 0.5502958579881657, 0.5680473372781065, 0.40236686390532544, 0.28994082840236685, 0.21893491124260356, 0.10059171597633136, 0.07100591715976332, 0.029585798816568046, 0.011834319526627219, 0.011834319526627219, 0.011834319526627219, 0.011834319526627219, 0.01775147928994083, 0.01775147928994083, 0.01775147928994083, 0.01775147928994083, 0.01775147928994083, 0.01775147928994083, 0.01775147928994083, 0.01775147928994083, 0.01775147928994083, 0.01775147928994083, 0.01775147928994083, 0.011834319526627219, 0.011834319526627219, 0.011834319526627219, 0.011834319526627219, 0.011834319526627219, 0.029585798816568046, 0.029585798816568046, 0.03550295857988166, 0.04142011834319527, 0.047337278106508875, 0.0650887573964497, 0.07100591715976332, 0.07100591715976332, 0.07100591715976332, 0.07100591715976332, 0.6923076923076923, 0.7159763313609467, 0.7396449704142012, 0.757396449704142, 0.7810650887573964, 0.7869822485207101, 0.8047337278106509, 0.8047337278106509, 0.8106508875739645, 0.834319526627219, 0.8402366863905325, 0.8402366863905325, 0.8994082840236687, 0.8994082840236687, 0.8994082840236687, 0.9053254437869822, 0.9112426035502958, 0.9349112426035503, 0.9408284023668639, 0.9349112426035503, 0.9230769230769231, 0.9053254437869822, 0.9053254437869822, 0.8994082840236687, 0.8994082840236687, 0.8816568047337278, 0.8402366863905325, 0.834319526627219, 0.834319526627219, 0.8106508875739645, 0.8047337278106509, 0.7988165680473372, 0.7810650887573964, 0.7810650887573964, 0.7455621301775148, 0.727810650887574, 0.7100591715976331, 0.6627218934911243, 0.6153846153846154, 0.591715976331361, 0.5384615384615384, 0.4437869822485207, 0.21893491124260356, 0.21301775147928995, 0.10650887573964497, 0.10059171597633136, 0.09467455621301775, 0.1242603550295858, 0.10059171597633136, 0.10059171597633136, 0.08875739644970414, 0.08875739644970414, 0.08284023668639054, 0.08284023668639054, 0.08284023668639054, 0.08284023668639054, 0.08284023668639054, 0.08284023668639054, 0.08284023668639054, 0.08284023668639054, 0.08284023668639054, 0.08284023668639054, 0.08284023668639054, 0.09467455621301775, 0.11242603550295859, 0.5207100591715976, 0.13609467455621302, 0.11242603550295859, 0.1242603550295858, 0.17159763313609466, 0.8165680473372781, 0.20118343195266272, 0.17751479289940827, 0.13609467455621302, 0.1301775147928994, 0.1301775147928994, 0.1301775147928994, 0.1301775147928994, 0.1301775147928994, 0.1301775147928994, 0.14792899408284024, 0.15384615384615385, 0.15976331360946747, 0.6982248520710059, 0.6686390532544378, 0.6627218934911243, 0.6627218934911243, 0.20710059171597633, 0.20710059171597633, 0.23076923076923078, 0.2485207100591716, 0.27218934911242604, 0.28402366863905326, 0.33727810650887574, 0.9053254437869822, 0.4319526627218935, 0.47928994082840237, 0.4911242603550296, 0.5088757396449705, 0.5266272189349113, 0.5443786982248521, 0.5857988165680473, 0.8816568047337278, 0.8284023668639053, 0.6568047337278107, 0.6568047337278107, 0.6686390532544378, 0.834319526627219, 0.6923076923076923, 0.7041420118343196, 0.7218934911242604, 0.7455621301775148, 0.757396449704142, 0.8047337278106509, 0.8698224852071006], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DinB.gap.json b/pfam_gap_rates/DinB.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d8e08ecda04713fec67693edfbb6349f3fe9db99
--- /dev/null
+++ b/pfam_gap_rates/DinB.gap.json
@@ -0,0 +1 @@
+{"family": "DinB", "n_seqs": 807, "length": 182, "gap_rates": [0.7174721189591078, 0.6840148698884758, 0.6691449814126395, 0.6530359355638166, 0.6071871127633209, 0.5489467162329615, 0.6394052044609665, 0.5551425030978935, 0.23296158612143741, 0.18711276332094176, 0.16604708798017348, 0.15737298636926889, 0.15117719950433706, 0.14250309789343246, 0.137546468401487, 0.13382899628252787, 0.1288723667905824, 0.1251548946716233, 0.11771995043370508, 0.10656753407682776, 0.10285006195786865, 0.10037174721189591, 0.09541511771995044, 0.09045848822800495, 0.08798017348203221, 0.08550185873605948, 0.08798017348203221, 0.09045848822800495, 0.08798017348203221, 0.08674101610904585, 0.09169764560099132, 0.08674101610904585, 0.08674101610904585, 0.08798017348203221, 0.13011152416356878, 0.11895910780669144, 0.11400247831474597, 0.10780669144981413, 0.09045848822800495, 0.0768277571251549, 0.06939281288723669, 0.06567534076827757, 0.058240396530359353, 0.05452292441140025, 0.05080545229244114, 0.04337050805452292, 0.042131350681536554, 0.03841387856257745, 0.03717472118959108, 0.03965303593556382, 0.03593556381660471, 0.03841387856257745, 0.03593556381660471, 0.03593556381660471, 0.058240396530359353, 0.05080545229244114, 0.03593556381660471, 0.040892193308550186, 0.03841387856257745, 0.03469640644361834, 0.0322180916976456, 0.04956629491945477, 0.04337050805452292, 0.040892193308550186, 0.6939281288723668, 0.7719950433705081, 0.815365551425031, 0.8884758364312267, 0.9132589838909542, 0.9306071871127634, 0.9244114002478315, 0.9008674101610905, 0.8736059479553904, 0.8079306071871127, 0.7273853779429987, 0.6468401486988847, 0.3246592317224288, 0.23667905824039653, 0.11152416356877323, 0.0644361833952912, 0.04708798017348203, 0.048327137546468404, 0.04460966542750929, 0.03965303593556382, 0.03593556381660471, 0.04337050805452292, 0.04337050805452292, 0.03965303593556382, 0.04337050805452292, 0.04584882280049566, 0.03593556381660471, 0.03345724907063197, 0.02973977695167286, 0.03345724907063197, 0.0322180916976456, 0.0322180916976456, 0.030978934324659233, 0.02973977695167286, 0.03345724907063197, 0.03345724907063197, 0.02973977695167286, 0.027261462205700124, 0.026022304832713755, 0.027261462205700124, 0.024783147459727387, 0.024783147459727387, 0.023543990086741014, 0.027261462205700124, 0.026022304832713755, 0.024783147459727387, 0.024783147459727387, 0.026022304832713755, 0.023543990086741014, 0.027261462205700124, 0.028500619578686492, 0.6741016109045849, 0.8698884758364313, 0.59727385377943, 0.31970260223048325, 0.26270136307311026, 0.19950433705080545, 0.04584882280049566, 0.02973977695167286, 0.024783147459727387, 0.023543990086741014, 0.9417596034696406, 0.8934324659231723, 0.028500619578686492, 0.028500619578686492, 0.024783147459727387, 0.022304832713754646, 0.01734820322180917, 0.01982651796778191, 0.01982651796778191, 0.021065675340768277, 0.01982651796778191, 0.0161090458488228, 0.01734820322180917, 0.01734820322180917, 0.0161090458488228, 0.01858736059479554, 0.013630731102850062, 0.013630731102850062, 0.013630731102850062, 0.01486988847583643, 0.013630731102850062, 0.012391573729863693, 0.011152416356877323, 0.011152416356877323, 0.011152416356877323, 0.011152416356877323, 0.011152416356877323, 0.011152416356877323, 0.011152416356877323, 0.012391573729863693, 0.013630731102850062, 0.01486988847583643, 0.0161090458488228, 0.01858736059479554, 0.01858736059479554, 0.023543990086741014, 0.027261462205700124, 0.03469640644361834, 0.04337050805452292, 0.055762081784386616, 0.05947955390334572, 0.07558859975216853, 0.09665427509293681, 0.10037174721189591, 0.12019826517967781, 0.18711276332094176, 0.23543990086741015, 0.275092936802974, 0.33705080545229243, 0.39281288723667906, 0.45353159851301117, 0.5278810408921933, 0.6220570012391574, 0.7298636926889716, 0.8228004956629492, 0.8835192069392813, 0.9330855018587361], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Dioxygenase_N.gap.json b/pfam_gap_rates/Dioxygenase_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..dce8e8b2f0cb7abadbddc480b97a94d247f9233e
--- /dev/null
+++ b/pfam_gap_rates/Dioxygenase_N.gap.json
@@ -0,0 +1 @@
+{"family": "Dioxygenase_N", "n_seqs": 456, "length": 75, "gap_rates": [0.4100877192982456, 0.06140350877192982, 0.03728070175438596, 0.03508771929824561, 0.03508771929824561, 0.03508771929824561, 0.03508771929824561, 0.02850877192982456, 0.02850877192982456, 0.02850877192982456, 0.02850877192982456, 0.02631578947368421, 0.02412280701754386, 0.021929824561403508, 0.021929824561403508, 0.021929824561403508, 0.021929824561403508, 0.021929824561403508, 0.021929824561403508, 0.021929824561403508, 0.021929824561403508, 0.021929824561403508, 0.021929824561403508, 0.021929824561403508, 0.021929824561403508, 0.021929824561403508, 0.021929824561403508, 0.021929824561403508, 0.021929824561403508, 0.017543859649122806, 0.017543859649122806, 0.017543859649122806, 0.017543859649122806, 0.017543859649122806, 0.017543859649122806, 0.015350877192982455, 0.015350877192982455, 0.015350877192982455, 0.02412280701754386, 0.019736842105263157, 0.021929824561403508, 0.19298245614035087, 0.19298245614035087, 0.19078947368421054, 0.19078947368421054, 0.19298245614035087, 0.03728070175438596, 0.02412280701754386, 0.015350877192982455, 0.015350877192982455, 0.015350877192982455, 0.015350877192982455, 0.015350877192982455, 0.015350877192982455, 0.015350877192982455, 0.015350877192982455, 0.015350877192982455, 0.09429824561403509, 0.017543859649122806, 0.015350877192982455, 0.015350877192982455, 0.021929824561403508, 0.02412280701754386, 0.02631578947368421, 0.02631578947368421, 0.02850877192982456, 0.03289473684210526, 0.043859649122807015, 0.07236842105263158, 0.17763157894736842, 0.24780701754385964, 0.30043859649122806, 0.3530701754385965, 0.4868421052631579, 0.8377192982456141], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Dna2.gap.json b/pfam_gap_rates/Dna2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..fd5ec2e1c89f8f14a02bc85d1146daa21139e0a3
--- /dev/null
+++ b/pfam_gap_rates/Dna2.gap.json
@@ -0,0 +1 @@
+{"family": "Dna2", "n_seqs": 302, "length": 248, "gap_rates": [0.7649006622516556, 0.5927152317880795, 0.4602649006622517, 0.3841059602649007, 0.32781456953642385, 0.2913907284768212, 0.23509933774834438, 0.2152317880794702, 0.2119205298013245, 0.20860927152317882, 0.20198675496688742, 0.1986754966887417, 0.18874172185430463, 0.18874172185430463, 0.18874172185430463, 0.18211920529801323, 0.18211920529801323, 0.17549668874172186, 0.17549668874172186, 0.17218543046357615, 0.16887417218543047, 0.16556291390728478, 0.16225165562913907, 0.16225165562913907, 0.16225165562913907, 0.16225165562913907, 0.16225165562913907, 0.16225165562913907, 0.16887417218543047, 0.18543046357615894, 0.18211920529801323, 0.18543046357615894, 0.18543046357615894, 0.4304635761589404, 0.19536423841059603, 0.2152317880794702, 0.17549668874172186, 0.7350993377483444, 0.7947019867549668, 0.8377483443708609, 0.8642384105960265, 0.9006622516556292, 0.9370860927152318, 0.9470198675496688, 0.9238410596026491, 0.8841059602649006, 0.8509933774834437, 0.8112582781456954, 0.7682119205298014, 0.7052980132450332, 0.15894039735099338, 0.15894039735099338, 0.15894039735099338, 0.15894039735099338, 0.15894039735099338, 0.15894039735099338, 0.13245033112582782, 0.9370860927152318, 0.9403973509933775, 0.9437086092715232, 0.9437086092715232, 0.9403973509933775, 0.9370860927152318, 0.12582781456953643, 0.11920529801324503, 0.11920529801324503, 0.11589403973509933, 0.11589403973509933, 0.11258278145695365, 0.11920529801324503, 0.11258278145695365, 0.11258278145695365, 0.11589403973509933, 0.11920529801324503, 0.11258278145695365, 0.11258278145695365, 0.11258278145695365, 0.11258278145695365, 0.11589403973509933, 0.11589403973509933, 0.11589403973509933, 0.11920529801324503, 0.12251655629139073, 0.11920529801324503, 0.11920529801324503, 0.11258278145695365, 0.11258278145695365, 0.11258278145695365, 0.10927152317880795, 0.10927152317880795, 0.10927152317880795, 0.10927152317880795, 0.10927152317880795, 0.10927152317880795, 0.10927152317880795, 0.9403973509933775, 0.13245033112582782, 0.13245033112582782, 0.18211920529801323, 0.1456953642384106, 0.22185430463576158, 0.9304635761589404, 0.9470198675496688, 0.890728476821192, 0.10927152317880795, 0.10264900662251655, 0.10264900662251655, 0.10264900662251655, 0.10596026490066225, 0.10596026490066225, 0.10596026490066225, 0.10596026490066225, 0.10596026490066225, 0.10596026490066225, 0.10596026490066225, 0.10596026490066225, 0.10596026490066225, 0.10596026490066225, 0.10596026490066225, 0.10596026490066225, 0.10596026490066225, 0.10927152317880795, 0.10927152317880795, 0.9105960264900662, 0.9403973509933775, 0.9238410596026491, 0.9006622516556292, 0.11258278145695365, 0.12582781456953643, 0.2185430463576159, 0.152317880794702, 0.9370860927152318, 0.9470198675496688, 0.9470198675496688, 0.9470198675496688, 0.9470198675496688, 0.9470198675496688, 0.9470198675496688, 0.9370860927152318, 0.1423841059602649, 0.1423841059602649, 0.1423841059602649, 0.10927152317880795, 0.10927152317880795, 0.10596026490066225, 0.10264900662251655, 0.10264900662251655, 0.09933774834437085, 0.09933774834437085, 0.09933774834437085, 0.09933774834437085, 0.09933774834437085, 0.09933774834437085, 0.09933774834437085, 0.7847682119205298, 0.7450331125827815, 0.09933774834437085, 0.09933774834437085, 0.09933774834437085, 0.09602649006622517, 0.09602649006622517, 0.09271523178807947, 0.09271523178807947, 0.09602649006622517, 0.09933774834437085, 0.10264900662251655, 0.10264900662251655, 0.09933774834437085, 0.10264900662251655, 0.10596026490066225, 0.10596026490066225, 0.10927152317880795, 0.11258278145695365, 0.11258278145695365, 0.11258278145695365, 0.11258278145695365, 0.11258278145695365, 0.11589403973509933, 0.11589403973509933, 0.11589403973509933, 0.11258278145695365, 0.11589403973509933, 0.11258278145695365, 0.10927152317880795, 0.10927152317880795, 0.10927152317880795, 0.11258278145695365, 0.11258278145695365, 0.11589403973509933, 0.12582781456953643, 0.12582781456953643, 0.1291390728476821, 0.1291390728476821, 0.1390728476821192, 0.1423841059602649, 0.18543046357615894, 0.19536423841059603, 0.2052980132450331, 0.1986754966887417, 0.2152317880794702, 0.23509933774834438, 0.27483443708609273, 0.2913907284768212, 0.31125827814569534, 0.3344370860927152, 0.33112582781456956, 0.40728476821192056, 0.3576158940397351, 0.2847682119205298, 0.7682119205298014, 0.8443708609271523, 0.8675496688741722, 0.9139072847682119, 0.8874172185430463, 0.8642384105960265, 0.7880794701986755, 0.6854304635761589, 0.17218543046357615, 0.16556291390728478, 0.16225165562913907, 0.15894039735099338, 0.152317880794702, 0.1423841059602649, 0.1357615894039735, 0.12582781456953643, 0.12582781456953643, 0.12582781456953643, 0.12582781456953643, 0.12582781456953643, 0.12582781456953643, 0.12582781456953643, 0.12582781456953643, 0.13245033112582782, 0.12582781456953643, 0.1291390728476821, 0.1291390728476821, 0.13245033112582782, 0.13245033112582782, 0.13245033112582782, 0.13245033112582782, 0.13245033112582782, 0.1390728476821192, 0.1423841059602649, 0.1423841059602649, 0.17549668874172186, 0.20198675496688742, 0.31125827814569534, 0.5761589403973509], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DnaB_bind.gap.json b/pfam_gap_rates/DnaB_bind.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b4948978a7e4eb95945a591b3a9c8c89c191065f
--- /dev/null
+++ b/pfam_gap_rates/DnaB_bind.gap.json
@@ -0,0 +1 @@
+{"family": "DnaB_bind", "n_seqs": 1579, "length": 56, "gap_rates": [0.6022799240025333, 0.3046231792273591, 0.14439518682710575, 0.11146295123495883, 0.09689677010766308, 0.09056364787840405, 0.08486383787207093, 0.08043065231158962, 0.07536415452818239, 0.07156428119062698, 0.077897403419886, 0.0740975300823306, 0.06143128562381254, 0.06713109563014566, 0.03356554781507283, 0.009499683343888538, 0.008866371120962635, 0.006333122229259025, 0.00506649778340722, 0.00506649778340722, 0.00506649778340722, 0.004433185560481318, 0.004433185560481318, 0.004433185560481318, 0.0018999366687777073, 0.001266624445851805, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0006333122229259025, 0.00253324889170361, 0.001266624445851805, 0.02786573780873971, 0.01013299556681444, 0.0006333122229259025, 0.001266624445851805, 0.001266624445851805, 0.001266624445851805, 0.001266624445851805, 0.001266624445851805, 0.001266624445851805, 0.001266624445851805, 0.001266624445851805, 0.00253324889170361, 0.0037998733375554147, 0.01266624445851805, 0.01836605446485117, 0.029132362254591513, 0.046865104496516784, 0.08549715009499684, 0.13426219126029132, 0.2083597213426219, 0.41798606713109565, 0.7758074730842305], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Dus.gap.json b/pfam_gap_rates/Dus.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..7a1231a59e370b86dbaf49a4014fe15ecc863dcf
--- /dev/null
+++ b/pfam_gap_rates/Dus.gap.json
@@ -0,0 +1 @@
+{"family": "Dus", "n_seqs": 4615, "length": 351, "gap_rates": [0.7289274106175515, 0.21018418201516792, 0.1800650054171181, 0.1761646803900325, 0.13066088840736728, 0.12784398699891658, 0.12589382448537378, 0.12589382448537378, 0.12502708559046588, 0.1228602383531961, 0.12069339111592632, 0.11982665222101842, 0.11874322860238354, 0.11744312026002167, 0.11722643553629469, 0.1161430119176598, 0.1161430119176598, 0.11549295774647887, 0.11505958829902492, 0.11484290357529794, 0.11354279523293608, 0.11310942578548212, 0.11267605633802817, 0.9321776814734561, 0.9349945828819068, 0.9473456121343445, 0.9356446370530878, 0.933044420368364, 0.9217768147345612, 0.6281690140845071, 0.11072589382448537, 0.11007583965330445, 0.10964247020585048, 0.10920910075839653, 0.10834236186348863, 0.10314192849404118, 0.10227518959913326, 0.10205850487540628, 0.10205850487540628, 0.10270855904658721, 0.10292524377031419, 0.10270855904658721, 0.10357529794149513, 0.10357529794149513, 0.10292524377031419, 0.1284940411700975, 0.10725893824485373, 0.10530877573131094, 0.10357529794149513, 0.10400866738894908, 0.10617551462621885, 0.10465872156013001, 0.10205850487540628, 0.10119176598049838, 0.1009750812567714, 0.10032502708559046, 0.09989165763813651, 0.10162513542795233, 0.09837486457204767, 0.8554712892741062, 0.8760563380281691, 0.8845070422535212, 0.9230769230769231, 0.933044420368364, 0.9421451787648971, 0.9497291440953413, 0.9449620801733478, 0.9371614301191766, 0.9282773564463705, 0.9180931744312026, 0.8827735644637054, 0.8695557963163597, 0.8290357529794149, 0.23596966413867823, 0.18959913326110509, 0.08840736728060672, 0.08689057421451787, 0.08559046587215602, 0.08494041170097508, 0.08450704225352113, 0.08364030335861322, 0.08299024918743228, 0.08234019501625135, 0.08212351029252438, 0.08212351029252438, 0.08212351029252438, 0.08234019501625135, 0.08082340195016251, 0.08039003250270856, 0.0799566630552546, 0.08017334777898158, 0.08017334777898158, 0.08060671722643553, 0.0810400866738895, 0.0810400866738895, 0.08082340195016251, 0.0810400866738895, 0.7895991332611051, 0.27172264355362946, 0.0799566630552546, 0.0799566630552546, 0.07887323943661972, 0.07778981581798483, 0.0780065005417118, 0.0771397616468039, 0.07843986998916576, 0.07843986998916576, 0.07583965330444203, 0.07583965330444203, 0.07605633802816901, 0.07583965330444203, 0.07540628385698808, 0.07540628385698808, 0.07605633802816901, 0.07627302275189599, 0.07583965330444203, 0.07583965330444203, 0.07497291440953413, 0.07627302275189599, 0.0743228602383532, 0.07453954496208018, 0.07497291440953413, 0.07562296858071506, 0.07583965330444203, 0.07627302275189599, 0.07540628385698808, 0.07497291440953413, 0.07453954496208018, 0.0743228602383532, 0.07410617551462621, 0.0743228602383532, 0.0743228602383532, 0.07475622968580715, 0.07367280606717226, 0.07388949079089924, 0.07302275189599133, 0.07323943661971831, 0.07345612134344529, 0.09425785482123511, 0.07865655471289273, 0.07822318526543878, 0.07735644637053088, 0.07323943661971831, 0.8556879739978331, 0.9135427952329361, 0.7635969664138679, 0.07497291440953413, 0.07475622968580715, 0.07388949079089924, 0.07258938244853738, 0.07258938244853738, 0.07280606717226436, 0.0723726977248104, 0.0723726977248104, 0.07453954496208018, 0.07670639219934995, 0.08710725893824485, 0.09295774647887324, 0.8502708559046587, 0.8387865655471289, 0.2580715059588299, 0.2238353196099675, 0.09035752979414952, 0.08927410617551462, 0.1638136511375948, 0.08559046587215602, 0.07952329360780065, 0.07670639219934995, 0.07540628385698808, 0.07453954496208018, 0.07410617551462621, 0.07367280606717226, 0.07367280606717226, 0.07540628385698808, 0.07627302275189599, 0.07735644637053088, 0.07843986998916576, 0.07475622968580715, 0.07345612134344529, 0.07410617551462621, 0.07410617551462621, 0.07367280606717226, 0.0743228602383532, 0.0751895991332611, 0.0771397616468039, 0.07952329360780065, 0.857638136511376, 0.866305525460455, 0.866522210184182, 0.8673889490790899, 0.866522210184182, 0.8637053087757313, 0.8426868905742145, 0.08060671722643553, 0.0799566630552546, 0.0790899241603467, 0.08017334777898158, 0.0810400866738895, 0.0799566630552546, 0.08039003250270856, 0.08060671722643553, 0.9066088840736728, 0.7560130010834236, 0.07540628385698808, 0.07540628385698808, 0.0743228602383532, 0.07367280606717226, 0.07345612134344529, 0.07388949079089924, 0.07453954496208018, 0.0743228602383532, 0.07540628385698808, 0.08710725893824485, 0.08840736728060672, 0.09014084507042254, 0.08970747562296857, 0.09035752979414952, 0.08905742145178765, 0.8262188515709642, 0.9412784398699892, 0.6227518959913326, 0.08429035752979415, 0.07973997833152763, 0.07540628385698808, 0.07475622968580715, 0.07497291440953413, 0.07497291440953413, 0.07540628385698808, 0.0751895991332611, 0.07540628385698808, 0.07562296858071506, 0.07540628385698808, 0.07540628385698808, 0.0751895991332611, 0.07583965330444203, 0.07822318526543878, 0.07930660888407368, 0.08017334777898158, 0.08039003250270856, 0.08082340195016251, 0.0847237269772481, 0.08602383531960997, 0.2216684723726977, 0.17963163596966414, 0.08450704225352113, 0.08407367280606717, 0.0838569880823402, 0.08515709642470205, 0.08429035752979415, 0.0847237269772481, 0.08494041170097508, 0.08515709642470205, 0.08494041170097508, 0.08645720476706392, 0.08884073672806067, 0.0894907908992416, 0.09035752979414952, 0.0914409534127844, 0.09187432286023835, 0.09230769230769231, 0.09295774647887324, 0.09815817984832069, 0.352546045503792, 0.6463705308775731, 0.40628385698808234, 0.40823401950162513, 0.238136511375948, 0.20325027085590466, 0.19653304442036837, 0.19219934994582882, 0.23878656554712893, 0.20693391115926327, 0.20065005417118092, 0.20086673889490791, 0.21083423618634886, 0.21451787648970747, 0.2266522210184182, 0.2409534127843987, 0.8331527627302275, 0.31007583965330443, 0.25092091007583966, 0.23401950162513543, 0.22600216684723726, 0.9185265438786565, 0.9449620801733478, 0.9230769230769231, 0.9081256771397617, 0.22903575297941495, 0.22816901408450704, 0.23206933911159264, 0.2333694474539545, 0.2361863488624052, 0.24182015167930662, 0.24637053087757313, 0.25005417118093176, 0.2563380281690141, 0.26608884073672806, 0.26847237269772484, 0.27302275189599134, 0.27540628385698807, 0.28212351029252436, 0.28992416034669555, 0.3512459371614301, 0.3789815817984832, 0.324160346695558, 0.3202600216684724, 0.3254604550379198, 0.3280606717226435, 0.3315276273022752, 0.3347778981581798, 0.3391115926327194, 0.3412784398699892, 0.3447453954496208, 0.3505958829902492, 0.35579631635969666, 0.35774647887323946, 0.3570964247020585, 0.3590465872156013, 0.36034669555796317, 0.3629469122426869, 0.37161430119176597, 0.9488624052004334, 0.37681473456121345, 0.37768147345612135, 0.37854821235102926, 0.38114842903575297, 0.39111592632719394, 0.39003250270855905, 0.38829902491874324, 0.39263271939328276, 0.39371614301191765, 0.39588299024918744, 0.39848320693391115, 0.40411700975081255, 0.41170097508125675, 0.4229685807150596, 0.4316359696641387, 0.4422535211267606, 0.4559046587215601, 0.4741061755146262, 0.4894907908992416, 0.5111592632719393, 0.5765980498374864, 0.600216684723727, 0.6353196099674973, 0.6619718309859155, 0.7393282773564464, 0.9406283856988082, 0.8784398699891658, 0.9076923076923077, 0.9473456121343445], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Dynactin_p22.gap.json b/pfam_gap_rates/Dynactin_p22.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..44d2eb592479d8e29bfb76572c16b8c57e3d73f5
--- /dev/null
+++ b/pfam_gap_rates/Dynactin_p22.gap.json
@@ -0,0 +1 @@
+{"family": "Dynactin_p22", "n_seqs": 181, "length": 197, "gap_rates": [0.425414364640884, 0.34806629834254144, 0.26519337016574585, 0.22099447513812154, 0.22099447513812154, 0.20441988950276244, 0.18232044198895028, 0.18232044198895028, 0.1712707182320442, 0.16574585635359115, 0.16022099447513813, 0.16574585635359115, 0.16574585635359115, 0.1712707182320442, 0.16022099447513813, 0.2154696132596685, 0.16022099447513813, 0.16574585635359115, 0.16574585635359115, 0.16022099447513813, 0.16574585635359115, 0.18232044198895028, 0.16574585635359115, 0.16022099447513813, 0.15469613259668508, 0.143646408839779, 0.6022099447513812, 0.7403314917127072, 0.8176795580110497, 0.8674033149171271, 0.9392265193370166, 0.8895027624309392, 0.8397790055248618, 0.7900552486187845, 0.6906077348066298, 0.43646408839779005, 0.26519337016574585, 0.17679558011049723, 0.09944751381215469, 0.09944751381215469, 0.09944751381215469, 0.09944751381215469, 0.09944751381215469, 0.09392265193370165, 0.09392265193370165, 0.09392265193370165, 0.09392265193370165, 0.09392265193370165, 0.08839779005524862, 0.08839779005524862, 0.13259668508287292, 0.08839779005524862, 0.08839779005524862, 0.10497237569060773, 0.09944751381215469, 0.08287292817679558, 0.09392265193370165, 0.08839779005524862, 0.0718232044198895, 0.9281767955801105, 0.9281767955801105, 0.0718232044198895, 0.06629834254143646, 0.06629834254143646, 0.06629834254143646, 0.0718232044198895, 0.06077348066298342, 0.06077348066298342, 0.04419889502762431, 0.04419889502762431, 0.04419889502762431, 0.04419889502762431, 0.049723756906077346, 0.049723756906077346, 0.049723756906077346, 0.04419889502762431, 0.049723756906077346, 0.856353591160221, 0.9392265193370166, 0.7624309392265194, 0.03867403314917127, 0.8729281767955801, 0.9060773480662984, 0.8397790055248618, 0.06077348066298342, 0.055248618784530384, 0.03867403314917127, 0.03867403314917127, 0.03867403314917127, 0.049723756906077346, 0.292817679558011, 0.9392265193370166, 0.7955801104972375, 0.055248618784530384, 0.04419889502762431, 0.049723756906077346, 0.04419889502762431, 0.850828729281768, 0.861878453038674, 0.8729281767955801, 0.8784530386740331, 0.9116022099447514, 0.8729281767955801, 0.8729281767955801, 0.850828729281768, 0.850828729281768, 0.03314917127071823, 0.022099447513812154, 0.027624309392265192, 0.022099447513812154, 0.022099447513812154, 0.022099447513812154, 0.022099447513812154, 0.022099447513812154, 0.022099447513812154, 0.022099447513812154, 0.027624309392265192, 0.027624309392265192, 0.027624309392265192, 0.027624309392265192, 0.03314917127071823, 0.03314917127071823, 0.03314917127071823, 0.027624309392265192, 0.027624309392265192, 0.027624309392265192, 0.027624309392265192, 0.027624309392265192, 0.027624309392265192, 0.027624309392265192, 0.027624309392265192, 0.13259668508287292, 0.11602209944751381, 0.03314917127071823, 0.8784530386740331, 0.8674033149171271, 0.027624309392265192, 0.027624309392265192, 0.027624309392265192, 0.027624309392265192, 0.027624309392265192, 0.03314917127071823, 0.03314917127071823, 0.027624309392265192, 0.03867403314917127, 0.049723756906077346, 0.03314917127071823, 0.03314917127071823, 0.027624309392265192, 0.027624309392265192, 0.03314917127071823, 0.027624309392265192, 0.027624309392265192, 0.03314917127071823, 0.03314917127071823, 0.03314917127071823, 0.03314917127071823, 0.03314917127071823, 0.03867403314917127, 0.03867403314917127, 0.03867403314917127, 0.03867403314917127, 0.03867403314917127, 0.03867403314917127, 0.03867403314917127, 0.049723756906077346, 0.049723756906077346, 0.049723756906077346, 0.049723756906077346, 0.049723756906077346, 0.049723756906077346, 0.049723756906077346, 0.049723756906077346, 0.049723756906077346, 0.049723756906077346, 0.049723756906077346, 0.055248618784530384, 0.055248618784530384, 0.0718232044198895, 0.08839779005524862, 0.16574585635359115, 0.20441988950276244, 0.2265193370165746, 0.2541436464088398, 0.281767955801105, 0.30386740331491713, 0.3425414364640884, 0.34806629834254144, 0.35359116022099446, 0.35911602209944754, 0.36464088397790057, 0.3701657458563536, 0.40331491712707185, 0.40331491712707185, 0.4143646408839779, 0.4419889502762431, 0.7624309392265194], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Dynamin_N.gap.json b/pfam_gap_rates/Dynamin_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..8198f9f2758b084be12658ad83b985910584f156
--- /dev/null
+++ b/pfam_gap_rates/Dynamin_N.gap.json
@@ -0,0 +1 @@
+{"family": "Dynamin_N", "n_seqs": 4040, "length": 297, "gap_rates": [0.16361386138613862, 0.09282178217821782, 0.07376237623762376, 0.07128712871287128, 0.06980198019801981, 0.06757425742574258, 0.06435643564356436, 0.062376237623762376, 0.06089108910891089, 0.06089108910891089, 0.0599009900990099, 0.0599009900990099, 0.059158415841584155, 0.05841584158415842, 0.05816831683168317, 0.05841584158415842, 0.05841584158415842, 0.05816831683168317, 0.057673267326732676, 0.05693069306930693, 0.0547029702970297, 0.05297029702970297, 0.19356435643564357, 0.05841584158415842, 0.05693069306930693, 0.9086633663366337, 0.8915841584158416, 0.05643564356435644, 0.055445544554455446, 0.0547029702970297, 0.05420792079207921, 0.9413366336633663, 0.055445544554455446, 0.05396039603960396, 0.05371287128712871, 0.053217821782178217, 0.05396039603960396, 0.0551980198019802, 0.0547029702970297, 0.05618811881188119, 0.055693069306930694, 0.05594059405940594, 0.05643564356435644, 0.8448019801980198, 0.8457920792079208, 0.8507425742574257, 0.8591584158415841, 0.8680693069306931, 0.8794554455445545, 0.8868811881188119, 0.8962871287128713, 0.9056930693069307, 0.9123762376237624, 0.9190594059405941, 0.9235148514851486, 0.929950495049505, 0.9331683168316832, 0.9371287128712872, 0.94009900990099, 0.9433168316831683, 0.9448019801980198, 0.949009900990099, 0.9467821782178217, 0.9435643564356435, 0.942079207920792, 0.9386138613861386, 0.93490099009901, 0.930940594059406, 0.9274752475247525, 0.9212871287128713, 0.9158415841584159, 0.9094059405940594, 0.9002475247524753, 0.8915841584158416, 0.8846534653465347, 0.874009900990099, 0.8628712871287129, 0.8561881188118812, 0.8465346534653465, 0.8452970297029703, 0.8428217821782178, 0.05717821782178218, 0.15148514851485148, 0.15767326732673267, 0.1556930693069307, 0.16014851485148515, 0.44504950495049506, 0.38564356435643565, 0.778960396039604, 0.8126237623762376, 0.8497524752475247, 0.8839108910891089, 0.9113861386138614, 0.9438118811881188, 0.9168316831683169, 0.9017326732673268, 0.8668316831683168, 0.8309405940594059, 0.7913366336633664, 0.7606435643564357, 0.5361386138613862, 0.45495049504950497, 0.3551980198019802, 0.23267326732673269, 0.19876237623762377, 0.17574257425742573, 0.16361386138613862, 0.1485148514851485, 0.1433168316831683, 0.1438118811881188, 0.11435643564356436, 0.620049504950495, 0.700990099009901, 0.9467821782178217, 0.933910891089109, 0.6596534653465347, 0.5413366336633664, 0.1103960396039604, 0.1094059405940594, 0.10792079207920792, 0.10618811881188119, 0.1042079207920792, 0.10247524752475247, 0.10222772277227722, 0.10222772277227722, 0.10148514851485149, 0.09975247524752476, 0.1, 0.1, 0.10024752475247525, 0.10123762376237624, 0.10148514851485149, 0.10148514851485149, 0.10321782178217821, 0.10445544554455445, 0.10767326732673267, 0.1155940594059406, 0.12004950495049505, 0.1264851485148515, 0.43143564356435643, 0.35866336633663365, 0.3358910891089109, 0.3126237623762376, 0.2985148514851485, 0.300990099009901, 0.33712871287128715, 0.32524752475247526, 0.23267326732673269, 0.7804455445544555, 0.7900990099009901, 0.7950495049504951, 0.8091584158415842, 0.8185643564356435, 0.8282178217821782, 0.8353960396039604, 0.8393564356435643, 0.845049504950495, 0.850990099009901, 0.8571782178217822, 0.8616336633663366, 0.8670792079207921, 0.8742574257425743, 0.8794554455445545, 0.8841584158415842, 0.8876237623762376, 0.8918316831683168, 0.897029702970297, 0.9024752475247525, 0.9047029702970297, 0.9086633663366337, 0.9163366336633664, 0.9207920792079208, 0.9232673267326733, 0.9262376237623763, 0.9316831683168317, 0.9383663366336633, 0.945049504950495, 0.933910891089109, 0.9284653465346535, 0.925, 0.9217821782178218, 0.9190594059405941, 0.9108910891089109, 0.906930693069307, 0.903960396039604, 0.9017326732673268, 0.8957920792079208, 0.8893564356435644, 0.8858910891089109, 0.8814356435643564, 0.8774752475247525, 0.870049504950495, 0.8638613861386139, 0.8596534653465346, 0.8551980198019802, 0.848019801980198, 0.8425742574257425, 0.8361386138613861, 0.8321782178217821, 0.8237623762376237, 0.8121287128712872, 0.8022277227722773, 0.7918316831683169, 0.7834158415841584, 0.7693069306930693, 0.17945544554455445, 0.16856435643564358, 0.15915841584158416, 0.1547029702970297, 0.149009900990099, 0.07920792079207921, 0.07722772277227723, 0.07549504950495049, 0.07178217821782178, 0.07128712871287128, 0.07277227722772277, 0.06856435643564357, 0.06831683168316832, 0.06757425742574258, 0.07277227722772277, 0.06831683168316832, 0.06782178217821783, 0.06757425742574258, 0.06806930693069307, 0.06806930693069307, 0.06905940594059407, 0.06930693069306931, 0.06881188118811882, 0.06856435643564357, 0.0745049504950495, 0.07178217821782178, 0.07301980198019802, 0.074009900990099, 0.07599009900990099, 0.19504950495049506, 0.43143564356435643, 0.4504950495049505, 0.4777227722772277, 0.5762376237623762, 0.5866336633663366, 0.5014851485148515, 0.4623762376237624, 0.44504950495049506, 0.4202970297029703, 0.08292079207920793, 0.07920792079207921, 0.07920792079207921, 0.07673267326732673, 0.07599009900990099, 0.07673267326732673, 0.07846534653465347, 0.55990099009901, 0.07797029702970297, 0.07821782178217822, 0.0806930693069307, 0.08143564356435644, 0.08168316831683169, 0.08168316831683169, 0.08118811881188119, 0.08143564356435644, 0.08292079207920793, 0.0858910891089109, 0.0891089108910891, 0.09207920792079208, 0.0952970297029703, 0.10495049504950495, 0.12202970297029703, 0.11905940594059405, 0.12178217821782178, 0.1368811881188119, 0.12871287128712872, 0.13242574257425743, 0.1363861386138614, 0.1405940594059406, 0.14455445544554454, 0.1495049504950495, 0.1650990099009901, 0.17698019801980197, 0.18762376237623762, 0.19455445544554456, 0.20272277227722774, 0.2103960396039604, 0.22153465346534654, 0.22673267326732674, 0.23044554455445546, 0.23564356435643563, 0.9366336633663367, 0.9457920792079207, 0.9202970297029703, 0.24207920792079207, 0.24504950495049505, 0.24925742574257426, 0.2547029702970297, 0.2638613861386139, 0.30767326732673267, 0.36188118811881187, 0.8321782178217821], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/EFG_C.gap.json b/pfam_gap_rates/EFG_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b621ad1a6332cc9f1508bf4e99e34f341a9cf4a3
--- /dev/null
+++ b/pfam_gap_rates/EFG_C.gap.json
@@ -0,0 +1 @@
+{"family": "EFG_C", "n_seqs": 5000, "length": 90, "gap_rates": [0.6614, 0.1792, 0.0568, 0.0412, 0.0278, 0.0234, 0.0224, 0.0222, 0.022, 0.0214, 0.0208, 0.0206, 0.02, 0.0198, 0.0196, 0.0194, 0.0192, 0.018, 0.0174, 0.0174, 0.0168, 0.0164, 0.017, 0.016, 0.0158, 0.0156, 0.0158, 0.0158, 0.0158, 0.0154, 0.0154, 0.0154, 0.015, 0.0152, 0.0148, 0.0146, 0.0144, 0.0144, 0.8436, 0.437, 0.0134, 0.0106, 0.0082, 0.007, 0.0058, 0.0054, 0.0056, 0.0056, 0.006, 0.0058, 0.006, 0.0066, 0.0064, 0.0068, 0.0064, 0.0064, 0.7424, 0.0068, 0.007, 0.007, 0.0072, 0.0078, 0.0084, 0.0086, 0.0086, 0.0086, 0.0088, 0.009, 0.01, 0.0102, 0.01, 0.0098, 0.0104, 0.0114, 0.0118, 0.013, 0.0146, 0.016, 0.0178, 0.0198, 0.0216, 0.0258, 0.0388, 0.0596, 0.0798, 0.131, 0.1818, 0.279, 0.3824, 0.6244], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/EHD_N.gap.json b/pfam_gap_rates/EHD_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f1fc1796b6c7657a66ddb86745f3f3de3178aea2
--- /dev/null
+++ b/pfam_gap_rates/EHD_N.gap.json
@@ -0,0 +1 @@
+{"family": "EHD_N", "n_seqs": 354, "length": 33, "gap_rates": [0.15819209039548024, 0.03672316384180791, 0.031073446327683617, 0.025423728813559324, 0.01977401129943503, 0.01694915254237288, 0.01694915254237288, 0.011299435028248588, 0.005649717514124294, 0.002824858757062147, 0.002824858757062147, 0.002824858757062147, 0.002824858757062147, 0.002824858757062147, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.002824858757062147, 0.005649717514124294, 0.00847457627118644, 0.00847457627118644, 0.01694915254237288, 0.031073446327683617, 0.03389830508474576, 0.03672316384180791, 0.04519774011299435, 0.288135593220339], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/EHN.gap.json b/pfam_gap_rates/EHN.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b25ae34d574ffce7f05d3d3dc4fc1d96acc4fb05
--- /dev/null
+++ b/pfam_gap_rates/EHN.gap.json
@@ -0,0 +1 @@
+{"family": "EHN", "n_seqs": 904, "length": 132, "gap_rates": [0.5, 0.168141592920354, 0.11172566371681415, 0.09734513274336283, 0.08738938053097345, 0.07632743362831858, 0.06969026548672566, 0.061946902654867256, 0.0586283185840708, 0.06084070796460177, 0.06858407079646017, 0.05641592920353982, 0.049778761061946904, 0.04756637168141593, 0.04314159292035398, 0.04092920353982301, 0.03982300884955752, 0.03982300884955752, 0.03871681415929203, 0.03761061946902655, 0.03761061946902655, 0.03761061946902655, 0.03650442477876106, 0.9491150442477876, 0.032079646017699116, 0.03871681415929203, 0.8550884955752213, 0.9214601769911505, 0.7986725663716814, 0.03650442477876106, 0.06415929203539823, 0.08517699115044247, 0.08517699115044247, 0.084070796460177, 0.09734513274336283, 0.029867256637168143, 0.3838495575221239, 0.7820796460176991, 0.9303097345132744, 0.8738938053097345, 0.6946902654867256, 0.17809734513274336, 0.029867256637168143, 0.034292035398230086, 0.6946902654867256, 0.046460176991150445, 0.04424778761061947, 0.022123893805309734, 0.022123893805309734, 0.01991150442477876, 0.017699115044247787, 0.014380530973451327, 0.015486725663716814, 0.015486725663716814, 0.014380530973451327, 0.01327433628318584, 0.01327433628318584, 0.01327433628318584, 0.01327433628318584, 0.01327433628318584, 0.014380530973451327, 0.08849557522123894, 0.016592920353982302, 0.014380530973451327, 0.01327433628318584, 0.01327433628318584, 0.01327433628318584, 0.014380530973451327, 0.01991150442477876, 0.01327433628318584, 0.01327433628318584, 0.00995575221238938, 0.007743362831858407, 0.8561946902654868, 0.00663716814159292, 0.007743362831858407, 0.008849557522123894, 0.008849557522123894, 0.008849557522123894, 0.00995575221238938, 0.011061946902654867, 0.015486725663716814, 0.015486725663716814, 0.9059734513274337, 0.8528761061946902, 0.014380530973451327, 0.8772123893805309, 0.9402654867256637, 0.8761061946902655, 0.014380530973451327, 0.7245575221238938, 0.8672566371681416, 0.9236725663716814, 0.7300884955752213, 0.7212389380530974, 0.01327433628318584, 0.015486725663716814, 0.017699115044247787, 0.017699115044247787, 0.017699115044247787, 0.018805309734513276, 0.018805309734513276, 0.018805309734513276, 0.01991150442477876, 0.022123893805309734, 0.9137168141592921, 0.922566371681416, 0.9026548672566371, 0.035398230088495575, 0.035398230088495575, 0.032079646017699116, 0.025442477876106196, 0.915929203539823, 0.9413716814159292, 0.9037610619469026, 0.024336283185840708, 0.024336283185840708, 0.024336283185840708, 0.024336283185840708, 0.024336283185840708, 0.025442477876106196, 0.025442477876106196, 0.02765486725663717, 0.02765486725663717, 0.033185840707964605, 0.034292035398230086, 0.034292035398230086, 0.04424778761061947, 0.046460176991150445, 0.05309734513274336, 0.06637168141592921, 0.25], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/ELK.gap.json b/pfam_gap_rates/ELK.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..830111d3a14b5992a1c1d321ea70b9d412fe105c
--- /dev/null
+++ b/pfam_gap_rates/ELK.gap.json
@@ -0,0 +1 @@
+{"family": "ELK", "n_seqs": 254, "length": 22, "gap_rates": [0.01968503937007874, 0.003937007874015748, 0.0, 0.0, 0.0, 0.0, 0.0, 0.003937007874015748, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.003937007874015748, 0.003937007874015748, 0.01968503937007874, 0.01968503937007874, 0.03543307086614173], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/ELM2.gap.json b/pfam_gap_rates/ELM2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..7ecf7877d5dbe6ba83bc5977059d45fea9a3c34e
--- /dev/null
+++ b/pfam_gap_rates/ELM2.gap.json
@@ -0,0 +1 @@
+{"family": "ELM2", "n_seqs": 531, "length": 103, "gap_rates": [0.096045197740113, 0.05273069679849341, 0.035781544256120526, 0.032015065913371, 0.030131826741996232, 0.030131826741996232, 0.02824858757062147, 0.02448210922787194, 0.02071563088512241, 0.02071563088512241, 0.02071563088512241, 0.02071563088512241, 0.026365348399246705, 0.879472693032015, 0.02824858757062147, 0.030131826741996232, 0.018832391713747645, 0.047080979284369114, 0.04896421845574388, 0.9416195856873822, 0.064030131826742, 0.030131826741996232, 0.026365348399246705, 0.02071563088512241, 0.9227871939736346, 0.02448210922787194, 0.06591337099811675, 0.0583804143126177, 0.035781544256120526, 0.03389830508474576, 0.047080979284369114, 0.064030131826742, 0.224105461393597, 0.3540489642184557, 0.8662900188323918, 0.871939736346516, 0.879472693032015, 0.8907721280602636, 0.8926553672316384, 0.896421845574388, 0.903954802259887, 0.9096045197740112, 0.911487758945386, 0.9171374764595104, 0.9322033898305084, 0.9340866290018832, 0.9397363465160076, 0.943502824858757, 0.9472693032015066, 0.9472693032015066, 0.9491525423728814, 0.9491525423728814, 0.9491525423728814, 0.9491525423728814, 0.9491525423728814, 0.9491525423728814, 0.9491525423728814, 0.9491525423728814, 0.9472693032015066, 0.9472693032015066, 0.943502824858757, 0.9378531073446328, 0.9340866290018832, 0.9303201506591338, 0.9152542372881356, 0.911487758945386, 0.9058380414312618, 0.9020715630885122, 0.8926553672316384, 0.8907721280602636, 0.8870056497175142, 0.8738229755178908, 0.8700564971751412, 0.8531073446327684, 0.02824858757062147, 0.032015065913371, 0.03389830508474576, 0.032015065913371, 0.8436911487758946, 0.9001883239171374, 0.9152542372881356, 0.8926553672316384, 0.8342749529190208, 0.3559322033898305, 0.1224105461393597, 0.07532956685499058, 0.0583804143126177, 0.0583804143126177, 0.062146892655367235, 0.06591337099811675, 0.07344632768361582, 0.9491525423728814, 0.9340866290018832, 0.0696798493408663, 0.08097928436911488, 0.08286252354048965, 0.08851224105461393, 0.09416195856873823, 0.11487758945386065, 0.1694915254237288, 0.19397363465160075, 0.3069679849340866, 0.6516007532956686], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/ERCC3_RAD25_C.gap.json b/pfam_gap_rates/ERCC3_RAD25_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..2f4cb2ec78f5a59b30b62c95ea620c0a1769ad1d
--- /dev/null
+++ b/pfam_gap_rates/ERCC3_RAD25_C.gap.json
@@ -0,0 +1 @@
+{"family": "ERCC3_RAD25_C", "n_seqs": 757, "length": 248, "gap_rates": [0.43593130779392336, 0.2192866578599736, 0.20343461030383092, 0.20079260237780713, 0.19815059445178335, 0.19815059445178335, 0.19815059445178335, 0.19815059445178335, 0.19815059445178335, 0.19815059445178335, 0.19815059445178335, 0.19815059445178335, 0.19815059445178335, 0.19815059445178335, 0.19815059445178335, 0.19682959048877147, 0.19682959048877147, 0.19682959048877147, 0.19418758256274768, 0.19418758256274768, 0.1955085865257596, 0.1955085865257596, 0.1955085865257596, 0.1928665785997358, 0.18361955085865259, 0.18229854689564068, 0.17965653896961692, 0.178335535006605, 0.178335535006605, 0.18229854689564068, 0.17965653896961692, 0.8877146631439894, 0.17040951122853368, 0.15984147952443858, 0.15323645970937913, 0.14398943196829592, 0.130779392338177, 0.1202113606340819, 0.11492734478203434, 0.11360634081902246, 0.11096433289299867, 0.11096433289299867, 0.10568031704095113, 0.10303830911492734, 0.095112285336856, 0.0845442536327609, 0.0845442536327609, 0.083223249669749, 0.083223249669749, 0.083223249669749, 0.08190224570673713, 0.083223249669749, 0.08058124174372523, 0.08058124174372523, 0.08718626155878467, 0.0964332892998679, 0.09379128137384413, 0.17569352708058125, 0.35667107001321, 0.2866578599735799, 0.13210039630118892, 0.1215323645970938, 0.08850726552179657, 0.06869220607661823, 0.05812417437252312, 0.05812417437252312, 0.05812417437252312, 0.059445178335535004, 0.059445178335535004, 0.059445178335535004, 0.059445178335535004, 0.059445178335535004, 0.059445178335535004, 0.059445178335535004, 0.0607661822985469, 0.059445178335535004, 0.059445178335535004, 0.059445178335535004, 0.059445178335535004, 0.059445178335535004, 0.05548216644649934, 0.052840158520475564, 0.052840158520475564, 0.052840158520475564, 0.052840158520475564, 0.05019815059445178, 0.05019815059445178, 0.05019815059445178, 0.05019815059445178, 0.0488771466314399, 0.0488771466314399, 0.0488771466314399, 0.046235138705416116, 0.04491413474240423, 0.04491413474240423, 0.04227212681638045, 0.04227212681638045, 0.04227212681638045, 0.03963011889035667, 0.04095112285336856, 0.04095112285336856, 0.03830911492734478, 0.03830911492734478, 0.03963011889035667, 0.04095112285336856, 0.4808454425363276, 0.05812417437252312, 0.04491413474240423, 0.043593130779392336, 0.04095112285336856, 0.03830911492734478, 0.03830911492734478, 0.03830911492734478, 0.03830911492734478, 0.036988110964332896, 0.03963011889035667, 0.04095112285336856, 0.04095112285336856, 0.04095112285336856, 0.04095112285336856, 0.04095112285336856, 0.04095112285336856, 0.04227212681638045, 0.04227212681638045, 0.043593130779392336, 0.04095112285336856, 0.04095112285336856, 0.04227212681638045, 0.043593130779392336, 0.043593130779392336, 0.05151915455746367, 0.046235138705416116, 0.05680317040951123, 0.0845442536327609, 0.07793923381770146, 0.052840158520475564, 0.04491413474240423, 0.04491413474240423, 0.0488771466314399, 0.047556142668428, 0.0488771466314399, 0.0488771466314399, 0.047556142668428, 0.047556142668428, 0.047556142668428, 0.047556142668428, 0.047556142668428, 0.047556142668428, 0.047556142668428, 0.047556142668428, 0.046235138705416116, 0.046235138705416116, 0.04491413474240423, 0.05151915455746367, 0.05680317040951123, 0.7992073976221928, 0.5191545574636723, 0.5138705416116248, 0.9313077939233818, 0.9352708058124174, 0.9458388375165125, 0.9431968295904888, 0.9352708058124174, 0.9233817701453104, 0.4914134742404227, 0.15852047556142668, 0.10303830911492734, 0.071334214002642, 0.05548216644649934, 0.05680317040951123, 0.05680317040951123, 0.05680317040951123, 0.05680317040951123, 0.05812417437252312, 0.059445178335535004, 0.05812417437252312, 0.05680317040951123, 0.05548216644649934, 0.05416116248348745, 0.05416116248348745, 0.05416116248348745, 0.052840158520475564, 0.052840158520475564, 0.052840158520475564, 0.052840158520475564, 0.05548216644649934, 0.05416116248348745, 0.05416116248348745, 0.05680317040951123, 0.10568031704095113, 0.14002642007926025, 0.1571994715984148, 0.16116248348745046, 0.16248348745046234, 0.16776750330250992, 0.16776750330250992, 0.17437252311756934, 0.17569352708058125, 0.178335535006605, 0.17965653896961692, 0.19815059445178335, 0.2430647291941876, 0.2800528401585205, 0.4240422721268164, 0.48745046235138706, 0.5099075297225891, 0.523117569352708, 0.5284015852047557, 0.5376486129458389, 0.5416116248348745, 0.6420079260237781, 0.5587846763540291, 0.5574636723910171, 0.5561426684280053, 0.5587846763540291, 0.5587846763540291, 0.5561426684280053, 0.5574636723910171, 0.5574636723910171, 0.5627476882430648, 0.5627476882430648, 0.5627476882430648, 0.5627476882430648, 0.5627476882430648, 0.5640686922060766, 0.5653896961690885, 0.5667107001321003, 0.5667107001321003, 0.5667107001321003, 0.5667107001321003, 0.5667107001321003, 0.5680317040951123, 0.5680317040951123, 0.5693527080581242, 0.5693527080581242, 0.5693527080581242, 0.570673712021136, 0.5733157199471598, 0.6129458388375165, 0.6248348745046235, 0.6340819022457067, 0.6472919418758256, 0.6710700132100397, 0.71334214002642, 0.7582562747688243, 0.8309114927344782, 0.8824306472919419, 0.9022457067371202], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/ERF.gap.json b/pfam_gap_rates/ERF.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..04eeb1dc6b6ab4243c9f25d53f982705471258c7
--- /dev/null
+++ b/pfam_gap_rates/ERF.gap.json
@@ -0,0 +1 @@
+{"family": "ERF", "n_seqs": 126, "length": 190, "gap_rates": [0.5476190476190477, 0.3888888888888889, 0.21428571428571427, 0.1111111111111111, 0.07936507936507936, 0.07936507936507936, 0.06349206349206349, 0.06349206349206349, 0.06349206349206349, 0.06349206349206349, 0.05555555555555555, 0.047619047619047616, 0.9206349206349206, 0.9206349206349206, 0.25396825396825395, 0.03968253968253968, 0.03968253968253968, 0.03968253968253968, 0.03968253968253968, 0.03968253968253968, 0.031746031746031744, 0.9365079365079365, 0.9444444444444444, 0.9285714285714286, 0.023809523809523808, 0.1111111111111111, 0.10317460317460317, 0.023809523809523808, 0.023809523809523808, 0.031746031746031744, 0.031746031746031744, 0.023809523809523808, 0.023809523809523808, 0.023809523809523808, 0.023809523809523808, 0.023809523809523808, 0.023809523809523808, 0.023809523809523808, 0.023809523809523808, 0.015873015873015872, 0.007936507936507936, 0.007936507936507936, 0.007936507936507936, 0.007936507936507936, 0.007936507936507936, 0.007936507936507936, 0.007936507936507936, 0.007936507936507936, 0.031746031746031744, 0.023809523809523808, 0.007936507936507936, 0.007936507936507936, 0.007936507936507936, 0.015873015873015872, 0.015873015873015872, 0.007936507936507936, 0.007936507936507936, 0.007936507936507936, 0.6825396825396826, 0.7142857142857143, 0.753968253968254, 0.7619047619047619, 0.7698412698412699, 0.8650793650793651, 0.9047619047619048, 0.9206349206349206, 0.9365079365079365, 0.9365079365079365, 0.9047619047619048, 0.8968253968253969, 0.8571428571428571, 0.7619047619047619, 0.753968253968254, 0.7380952380952381, 0.6825396825396826, 0.6587301587301587, 0.4603174603174603, 0.4603174603174603, 0.4126984126984127, 0.24603174603174602, 0.10317460317460317, 0.0873015873015873, 0.05555555555555555, 0.05555555555555555, 0.047619047619047616, 0.023809523809523808, 0.023809523809523808, 0.023809523809523808, 0.031746031746031744, 0.047619047619047616, 0.031746031746031744, 0.015873015873015872, 0.015873015873015872, 0.015873015873015872, 0.023809523809523808, 0.015873015873015872, 0.023809523809523808, 0.023809523809523808, 0.09523809523809523, 0.05555555555555555, 0.03968253968253968, 0.023809523809523808, 0.023809523809523808, 0.023809523809523808, 0.023809523809523808, 0.031746031746031744, 0.015873015873015872, 0.023809523809523808, 0.015873015873015872, 0.015873015873015872, 0.015873015873015872, 0.023809523809523808, 0.023809523809523808, 0.015873015873015872, 0.5476190476190477, 0.753968253968254, 0.9285714285714286, 0.9365079365079365, 0.8968253968253969, 0.5873015873015873, 0.5396825396825397, 0.5, 0.15079365079365079, 0.015873015873015872, 0.015873015873015872, 0.015873015873015872, 0.015873015873015872, 0.023809523809523808, 0.015873015873015872, 0.015873015873015872, 0.015873015873015872, 0.015873015873015872, 0.015873015873015872, 0.015873015873015872, 0.015873015873015872, 0.015873015873015872, 0.015873015873015872, 0.015873015873015872, 0.015873015873015872, 0.015873015873015872, 0.015873015873015872, 0.015873015873015872, 0.015873015873015872, 0.015873015873015872, 0.015873015873015872, 0.18253968253968253, 0.40476190476190477, 0.42063492063492064, 0.3412698412698413, 0.12698412698412698, 0.023809523809523808, 0.031746031746031744, 0.05555555555555555, 0.8968253968253969, 0.9126984126984127, 0.9126984126984127, 0.9206349206349206, 0.9285714285714286, 0.9444444444444444, 0.9285714285714286, 0.9206349206349206, 0.9126984126984127, 0.9126984126984127, 0.8809523809523809, 0.09523809523809523, 0.11904761904761904, 0.15873015873015872, 0.23809523809523808, 0.23015873015873015, 0.24603174603174602, 0.2777777777777778, 0.2698412698412698, 0.29365079365079366, 0.30952380952380953, 0.36507936507936506, 0.3888888888888889, 0.4444444444444444, 0.4603174603174603, 0.49206349206349204, 0.5158730158730159, 0.5158730158730159, 0.5634920634920635, 0.5952380952380952, 0.626984126984127, 0.6904761904761905, 0.746031746031746, 0.8015873015873016, 0.8333333333333334, 0.8650793650793651, 0.9126984126984127], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/ESPR.gap.json b/pfam_gap_rates/ESPR.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..2c33fdf5802a702341c0ddd2dfa6657dc351eb3e
--- /dev/null
+++ b/pfam_gap_rates/ESPR.gap.json
@@ -0,0 +1 @@
+{"family": "ESPR", "n_seqs": 249, "length": 25, "gap_rates": [0.07630522088353414, 0.008032128514056224, 0.008032128514056224, 0.7710843373493976, 0.008032128514056224, 0.004016064257028112, 0.004016064257028112, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.004016064257028112, 0.004016064257028112, 0.004016064257028112, 0.004016064257028112, 0.004016064257028112, 0.004016064257028112, 0.008032128514056224, 0.008032128514056224, 0.028112449799196786, 0.17269076305220885, 0.37751004016064255], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/ESSS.gap.json b/pfam_gap_rates/ESSS.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d9f9afec25651a9ef4dc53eb577face7c41e293e
--- /dev/null
+++ b/pfam_gap_rates/ESSS.gap.json
@@ -0,0 +1 @@
+{"family": "ESSS", "n_seqs": 190, "length": 136, "gap_rates": [0.9421052631578948, 0.9, 0.8578947368421053, 0.8421052631578947, 0.8210526315789474, 0.8052631578947368, 0.8, 0.7947368421052632, 0.7947368421052632, 0.8157894736842105, 0.8052631578947368, 0.9473684210526315, 0.7631578947368421, 0.7842105263157895, 0.7684210526315789, 0.7578947368421053, 0.7684210526315789, 0.7473684210526316, 0.7473684210526316, 0.7421052631578947, 0.7421052631578947, 0.7368421052631579, 0.7157894736842105, 0.8157894736842105, 0.8473684210526315, 0.868421052631579, 0.8842105263157894, 0.8894736842105263, 0.8947368421052632, 0.9052631578947369, 0.9263157894736842, 0.9, 0.8947368421052632, 0.8894736842105263, 0.8842105263157894, 0.8631578947368421, 0.8368421052631579, 0.8105263157894737, 0.6789473684210526, 0.6526315789473685, 0.6421052631578947, 0.6, 0.6, 0.5736842105263158, 0.5526315789473685, 0.5210526315789473, 0.5, 0.49473684210526314, 0.47368421052631576, 0.41578947368421054, 0.3894736842105263, 0.3684210526315789, 0.3263157894736842, 0.32105263157894737, 0.3157894736842105, 0.2789473684210526, 0.2736842105263158, 0.2631578947368421, 0.6157894736842106, 0.29473684210526313, 0.22631578947368422, 0.11052631578947368, 0.6894736842105263, 0.7157894736842105, 0.7473684210526316, 0.7526315789473684, 0.7526315789473684, 0.9052631578947369, 0.7631578947368421, 0.7526315789473684, 0.7473684210526316, 0.7210526315789474, 0.6947368421052632, 0.6894736842105263, 0.06315789473684211, 0.05789473684210526, 0.04736842105263158, 0.04736842105263158, 0.04736842105263158, 0.04736842105263158, 0.04736842105263158, 0.04736842105263158, 0.05263157894736842, 0.031578947368421054, 0.04736842105263158, 0.05789473684210526, 0.031578947368421054, 0.031578947368421054, 0.031578947368421054, 0.021052631578947368, 0.015789473684210527, 0.021052631578947368, 0.021052631578947368, 0.015789473684210527, 0.021052631578947368, 0.015789473684210527, 0.015789473684210527, 0.010526315789473684, 0.015789473684210527, 0.015789473684210527, 0.015789473684210527, 0.9473684210526315, 0.010526315789473684, 0.010526315789473684, 0.9315789473684211, 0.005263157894736842, 0.005263157894736842, 0.005263157894736842, 0.010526315789473684, 0.010526315789473684, 0.010526315789473684, 0.010526315789473684, 0.010526315789473684, 0.010526315789473684, 0.010526315789473684, 0.010526315789473684, 0.010526315789473684, 0.010526315789473684, 0.010526315789473684, 0.021052631578947368, 0.3894736842105263, 0.4, 0.4473684210526316, 0.8526315789473684, 0.12631578947368421, 0.22631578947368422, 0.24736842105263157, 0.24736842105263157, 0.2578947368421053, 0.2631578947368421, 0.3, 0.37894736842105264, 0.45789473684210524, 0.5368421052631579, 0.5789473684210527, 0.8947368421052632], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/EST1.gap.json b/pfam_gap_rates/EST1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..9fcc25274b059dc2c0942ec96fd90f6459bc3c82
--- /dev/null
+++ b/pfam_gap_rates/EST1.gap.json
@@ -0,0 +1 @@
+{"family": "EST1", "n_seqs": 399, "length": 181, "gap_rates": [0.7393483709273183, 0.19047619047619047, 0.12531328320802004, 0.10025062656641603, 0.09022556390977443, 0.08270676691729323, 0.08020050125313283, 0.08020050125313283, 0.3659147869674185, 0.07017543859649122, 0.06766917293233082, 0.06766917293233082, 0.06766917293233082, 0.06766917293233082, 0.06766917293233082, 0.06766917293233082, 0.06516290726817042, 0.06516290726817042, 0.06516290726817042, 0.06516290726817042, 0.06516290726817042, 0.06516290726817042, 0.08521303258145363, 0.07769423558897243, 0.06516290726817042, 0.08020050125313283, 0.9323308270676691, 0.9423558897243107, 0.949874686716792, 0.9423558897243107, 0.9323308270676691, 0.49373433583959897, 0.6215538847117794, 0.6641604010025063, 0.6090225563909775, 0.6967418546365914, 0.7418546365914787, 0.7869674185463659, 0.8446115288220551, 0.9022556390977443, 0.9223057644110275, 0.9398496240601504, 0.9448621553884712, 0.9348370927318296, 0.9197994987468672, 0.8847117794486216, 0.8195488721804511, 0.7694235588972431, 0.7218045112781954, 0.6666666666666666, 0.5012531328320802, 0.48621553884711777, 0.47117794486215536, 0.44360902255639095, 0.3132832080200501, 0.19799498746867167, 0.09523809523809523, 0.08270676691729323, 0.07017543859649122, 0.06766917293233082, 0.06265664160401002, 0.07769423558897243, 0.9223057644110275, 0.9373433583959899, 0.9122807017543859, 0.05012531328320802, 0.042606516290726815, 0.03759398496240601, 0.03508771929824561, 0.03258145363408521, 0.03007518796992481, 0.03007518796992481, 0.03007518796992481, 0.02756892230576441, 0.02506265664160401, 0.02506265664160401, 0.02506265664160401, 0.02506265664160401, 0.02506265664160401, 0.02506265664160401, 0.02506265664160401, 0.02506265664160401, 0.02506265664160401, 0.022556390977443608, 0.02756892230576441, 0.02506265664160401, 0.02756892230576441, 0.02756892230576441, 0.02756892230576441, 0.07518796992481203, 0.08270676691729323, 0.15288220551378445, 0.731829573934837, 0.9047619047619048, 0.9373433583959899, 0.924812030075188, 0.8220551378446115, 0.5839598997493735, 0.20050125313283207, 0.3132832080200501, 0.2656641604010025, 0.8947368421052632, 0.40100250626566414, 0.3684210526315789, 0.3308270676691729, 0.3308270676691729, 0.5338345864661654, 0.5538847117794486, 0.581453634085213, 0.581453634085213, 0.8922305764411027, 0.899749373433584, 0.9097744360902256, 0.924812030075188, 0.9298245614035088, 0.9373433583959899, 0.949874686716792, 0.9423558897243107, 0.9373433583959899, 0.9298245614035088, 0.9122807017543859, 0.9047619047619048, 0.8972431077694235, 0.8822055137844611, 0.5739348370927319, 0.6140350877192983, 0.5864661654135338, 0.5664160401002506, 0.5463659147869674, 0.5714285714285714, 0.5338345864661654, 0.5839598997493735, 0.5889724310776943, 0.6290726817042607, 0.5914786967418546, 0.6942355889724311, 0.6666666666666666, 0.5964912280701754, 0.5588972431077694, 0.6741854636591479, 0.44360902255639095, 0.40852130325814534, 0.3558897243107769, 0.2807017543859649, 0.20551378446115287, 0.17293233082706766, 0.16290726817042606, 0.13032581453634084, 0.08020050125313283, 0.05263157894736842, 0.03508771929824561, 0.040100250626566414, 0.03508771929824561, 0.040100250626566414, 0.05764411027568922, 0.5037593984962406, 0.045112781954887216, 0.03258145363408521, 0.03007518796992481, 0.03007518796992481, 0.03007518796992481, 0.03007518796992481, 0.03007518796992481, 0.03007518796992481, 0.03007518796992481, 0.03007518796992481, 0.03007518796992481, 0.03007518796992481, 0.03007518796992481, 0.03007518796992481, 0.03007518796992481, 0.03007518796992481, 0.03007518796992481, 0.03258145363408521, 0.03508771929824561, 0.03759398496240601, 0.040100250626566414, 0.05764411027568922, 0.15037593984962405, 0.40100250626566414, 0.8446115288220551], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/EST1_DNA_bind.gap.json b/pfam_gap_rates/EST1_DNA_bind.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d16cfb1d78d0792f25567c850ad73e79e6431f60
--- /dev/null
+++ b/pfam_gap_rates/EST1_DNA_bind.gap.json
@@ -0,0 +1 @@
+{"family": "EST1_DNA_bind", "n_seqs": 602, "length": 433, "gap_rates": [0.292358803986711, 0.20764119601328904, 0.15282392026578073, 0.1345514950166113, 0.12624584717607973, 0.12458471760797342, 0.12292358803986711, 0.1212624584717608, 0.11794019933554817, 0.11794019933554817, 0.11461794019933555, 0.11129568106312292, 0.10465116279069768, 0.10465116279069768, 0.10299003322259136, 0.10299003322259136, 0.10299003322259136, 0.10299003322259136, 0.10299003322259136, 0.10299003322259136, 0.10132890365448505, 0.09800664451827243, 0.09800664451827243, 0.09800664451827243, 0.09800664451827243, 0.11129568106312292, 0.11129568106312292, 0.11129568106312292, 0.12790697674418605, 0.9302325581395349, 0.20431893687707642, 0.17940199335548174, 0.09302325581395349, 0.09302325581395349, 0.0946843853820598, 0.0946843853820598, 0.09136212624584718, 0.08803986710963455, 0.08803986710963455, 0.08637873754152824, 0.08637873754152824, 0.08970099667774087, 0.08803986710963455, 0.08803986710963455, 0.09302325581395349, 0.09136212624584718, 0.09136212624584718, 0.09136212624584718, 0.09302325581395349, 0.09302325581395349, 0.09634551495016612, 0.09966777408637874, 0.0946843853820598, 0.0946843853820598, 0.09634551495016612, 0.0946843853820598, 0.09634551495016612, 0.09634551495016612, 0.10299003322259136, 0.11461794019933555, 0.12790697674418605, 0.12790697674418605, 0.12458471760797342, 0.11794019933554817, 0.14119601328903655, 0.14950166112956811, 0.19269102990033224, 0.19767441860465115, 0.2009966777408638, 0.19601328903654486, 0.1893687707641196, 0.22093023255813954, 0.2292358803986711, 0.2292358803986711, 0.2691029900332226, 0.27740863787375414, 0.29069767441860467, 0.5730897009966778, 0.606312292358804, 0.6644518272425249, 0.5880398671096345, 0.686046511627907, 0.7093023255813954, 0.7225913621262459, 0.7425249169435216, 0.7458471760797342, 0.7508305647840532, 0.7641196013289037, 0.7691029900332226, 0.7740863787375415, 0.7840531561461794, 0.7890365448504983, 0.8023255813953488, 0.8222591362126246, 0.8338870431893688, 0.8471760797342193, 0.8621262458471761, 0.8920265780730897, 0.8986710963455149, 0.9036544850498339, 0.9102990033222591, 0.9119601328903655, 0.9136212624584718, 0.925249169435216, 0.9352159468438538, 0.9401993355481728, 0.9485049833887044, 0.9401993355481728, 0.9352159468438538, 0.920265780730897, 0.9119601328903655, 0.9119601328903655, 0.9102990033222591, 0.9019933554817275, 0.893687707641196, 0.8887043189368771, 0.8504983388704319, 0.8372093023255814, 0.8305647840531561, 0.8122923588039868, 0.7940199335548173, 0.7873754152823921, 0.7774086378737541, 0.7740863787375415, 0.7674418604651163, 0.7624584717607974, 0.7491694352159468, 0.7425249169435216, 0.7358803986710963, 0.717607973421927, 0.7009966777408638, 0.6810631229235881, 0.5631229235880398, 0.5182724252491694, 0.4867109634551495, 0.44518272425249167, 0.38704318936877075, 0.3488372093023256, 0.2441860465116279, 0.20764119601328904, 0.17940199335548174, 0.16943521594684385, 0.15614617940199335, 0.16611295681063123, 0.29401993355481726, 0.2823920265780731, 0.2707641196013289, 0.1511627906976744, 0.1478405315614618, 0.1511627906976744, 0.15282392026578073, 0.15282392026578073, 0.15448504983388706, 0.1511627906976744, 0.15282392026578073, 0.15614617940199335, 0.15448504983388706, 0.15614617940199335, 0.1611295681063123, 0.1611295681063123, 0.16279069767441862, 0.9269102990033222, 0.9019933554817275, 0.38870431893687707, 0.3803986710963455, 0.41029900332225916, 0.3089700996677741, 0.9069767441860465, 0.9418604651162791, 0.8837209302325582, 0.18106312292358803, 0.17940199335548174, 0.1777408637873754, 0.1777408637873754, 0.17940199335548174, 0.17940199335548174, 0.9368770764119602, 0.1760797342192691, 0.18106312292358803, 0.17940199335548174, 0.1777408637873754, 0.18106312292358803, 0.18438538205980065, 0.19933554817275748, 0.20764119601328904, 0.2159468438538206, 0.22259136212624583, 0.22425249169435216, 0.23421926910299004, 0.23421926910299004, 0.27408637873754155, 0.3538205980066445, 0.47674418604651164, 0.48006644518272423, 0.5149501661129569, 0.7325581395348837, 0.7574750830564784, 0.7857142857142857, 0.8571428571428571, 0.8737541528239202, 0.8970099667774086, 0.925249169435216, 0.9435215946843853, 0.9352159468438538, 0.920265780730897, 0.8920265780730897, 0.8687707641196013, 0.8554817275747508, 0.7674418604651163, 0.7425249169435216, 0.7259136212624585, 0.553156146179402, 0.45348837209302323, 0.4152823920265781, 0.27906976744186046, 0.27740863787375414, 0.2707641196013289, 0.2574750830564784, 0.2574750830564784, 0.2574750830564784, 0.2574750830564784, 0.2574750830564784, 0.2574750830564784, 0.2591362126245847, 0.2591362126245847, 0.26245847176079734, 0.27408637873754155, 0.27408637873754155, 0.9019933554817275, 0.9235880398671097, 0.8704318936877077, 0.27408637873754155, 0.2973421926910299, 0.2956810631229236, 0.2956810631229236, 0.28903654485049834, 0.2823920265780731, 0.2857142857142857, 0.292358803986711, 0.29401993355481726, 0.31727574750830567, 0.36710963455149503, 0.36046511627906974, 0.47840531561461797, 0.5016611295681063, 0.5166112956810631, 0.5365448504983389, 0.5730897009966778, 0.553156146179402, 0.7126245847176079, 0.8073089700996677, 0.8588039867109635, 0.9036544850498339, 0.920265780730897, 0.9318936877076412, 0.946843853820598, 0.9335548172757475, 0.9302325581395349, 0.9086378737541528, 0.8853820598006644, 0.8338870431893688, 0.770764119601329, 0.6245847176079734, 0.45348837209302323, 0.45016611295681064, 0.43023255813953487, 0.3920265780730897, 0.2956810631229236, 0.29401993355481726, 0.292358803986711, 0.29069767441860467, 0.28903654485049834, 0.2857142857142857, 0.287375415282392, 0.2857142857142857, 0.287375415282392, 0.287375415282392, 0.28903654485049834, 0.28903654485049834, 0.28903654485049834, 0.292358803986711, 0.29401993355481726, 0.3023255813953488, 0.30398671096345514, 0.30398671096345514, 0.3073089700996678, 0.33056478405315615, 0.4053156146179402, 0.40863787375415284, 0.6661129568106312, 0.686046511627907, 0.6976744186046512, 0.7325581395348837, 0.7973421926910299, 0.8222591362126246, 0.8521594684385382, 0.8870431893687708, 0.9003322259136213, 0.9335548172757475, 0.9169435215946844, 0.8970099667774086, 0.8704318936877077, 0.8338870431893688, 0.8073089700996677, 0.7724252491694352, 0.717607973421927, 0.6926910299003323, 0.6710963455149501, 0.6578073089700996, 0.6345514950166113, 0.627906976744186, 0.5730897009966778, 0.46511627906976744, 0.42857142857142855, 0.38372093023255816, 0.3704318936877076, 0.3588039867109635, 0.34717607973421927, 0.3372093023255814, 0.33554817275747506, 0.3338870431893688, 0.33222591362126247, 0.3338870431893688, 0.33554817275747506, 0.33554817275747506, 0.33554817275747506, 0.34551495016611294, 0.34219269102990035, 0.3438538205980066, 0.34551495016611294, 0.3438538205980066, 0.3438538205980066, 0.34219269102990035, 0.34219269102990035, 0.9352159468438538, 0.8803986710963455, 0.34717607973421927, 0.3538205980066445, 0.34551495016611294, 0.7956810631229236, 0.8305647840531561, 0.8588039867109635, 0.872093023255814, 0.9418604651162791, 0.9235880398671097, 0.8704318936877077, 0.8504983388704319, 0.8305647840531561, 0.7458471760797342, 0.45016611295681064, 0.44019933554817275, 0.4169435215946844, 0.4053156146179402, 0.4152823920265781, 0.3754152823920266, 0.3754152823920266, 0.3787375415282392, 0.42857142857142855, 0.39700996677740863, 0.38704318936877075, 0.3787375415282392, 0.3787375415282392, 0.3803986710963455, 0.3803986710963455, 0.3803986710963455, 0.38205980066445183, 0.38372093023255816, 0.38372093023255816, 0.3853820598006645, 0.3853820598006645, 0.38704318936877075, 0.5614617940199336, 0.7724252491694352, 0.8754152823920266, 0.9186046511627907, 0.9368770764119602, 0.946843853820598, 0.9401993355481728, 0.9352159468438538, 0.893687707641196, 0.8438538205980066, 0.6262458471760798, 0.553156146179402, 0.4684385382059801, 0.4485049833887043, 0.44019933554817275, 0.42857142857142855, 0.42524916943521596, 0.42857142857142855, 0.4219269102990033, 0.42358803986710963, 0.4269102990033223, 0.43853820598006643, 0.43853820598006643, 0.4601328903654485, 0.5348837209302325, 0.5182724252491694, 0.45016611295681064, 0.6877076411960132, 0.8156146179401993, 0.8571428571428571, 0.893687707641196, 0.9003322259136213, 0.9119601328903655, 0.9186046511627907, 0.9302325581395349, 0.9418604651162791, 0.920265780730897, 0.9119601328903655, 0.9069767441860465, 0.8953488372093024, 0.867109634551495, 0.8421926910299004, 0.7624584717607974, 0.659468438538206, 0.4186046511627907, 0.41362126245847175, 0.40863787375415284, 0.40863787375415284, 0.40863787375415284, 0.41029900332225916, 0.40863787375415284, 0.41029900332225916, 0.41362126245847175, 0.4186046511627907, 0.420265780730897, 0.4335548172757475, 0.45182724252491696, 0.4750830564784053, 0.4833887043189369, 0.5365448504983389, 0.6362126245847176, 0.7774086378737541], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/ETC_C1_NDUFA5.gap.json b/pfam_gap_rates/ETC_C1_NDUFA5.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..6e2e578571c6695f790a5aecde1b0b1329a17a8b
--- /dev/null
+++ b/pfam_gap_rates/ETC_C1_NDUFA5.gap.json
@@ -0,0 +1 @@
+{"family": "ETC_C1_NDUFA5", "n_seqs": 277, "length": 74, "gap_rates": [0.06859205776173286, 0.039711191335740074, 0.02888086642599278, 0.02888086642599278, 0.02888086642599278, 0.02527075812274368, 0.02527075812274368, 0.02527075812274368, 0.02527075812274368, 0.021660649819494584, 0.021660649819494584, 0.01444043321299639, 0.01444043321299639, 0.01444043321299639, 0.01444043321299639, 0.010830324909747292, 0.007220216606498195, 0.007220216606498195, 0.007220216606498195, 0.007220216606498195, 0.007220216606498195, 0.007220216606498195, 0.0036101083032490976, 0.9097472924187726, 0.0, 0.0036101083032490976, 0.0036101083032490976, 0.0036101083032490976, 0.007220216606498195, 0.007220216606498195, 0.0036101083032490976, 0.0036101083032490976, 0.0036101083032490976, 0.0036101083032490976, 0.0036101083032490976, 0.0036101083032490976, 0.0036101083032490976, 0.0036101083032490976, 0.0036101083032490976, 0.0036101083032490976, 0.0036101083032490976, 0.0036101083032490976, 0.0036101083032490976, 0.0036101083032490976, 0.0036101083032490976, 0.0036101083032490976, 0.0036101083032490976, 0.0036101083032490976, 0.0036101083032490976, 0.0036101083032490976, 0.7364620938628159, 0.740072202166065, 0.740072202166065, 0.740072202166065, 0.7364620938628159, 0.6245487364620939, 0.021660649819494584, 0.02888086642599278, 0.02888086642599278, 0.032490974729241874, 0.032490974729241874, 0.032490974729241874, 0.032490974729241874, 0.039711191335740074, 0.039711191335740074, 0.04332129963898917, 0.04332129963898917, 0.04693140794223827, 0.05054151624548736, 0.07220216606498195, 0.08303249097472924, 0.16606498194945848, 0.2527075812274368, 0.34296028880866425], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/ETF_alpha.gap.json b/pfam_gap_rates/ETF_alpha.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..4e4b594bcf144f0b8eae96ef47400ce214e0b2a3
--- /dev/null
+++ b/pfam_gap_rates/ETF_alpha.gap.json
@@ -0,0 +1 @@
+{"family": "ETF_alpha", "n_seqs": 2289, "length": 86, "gap_rates": [0.7715159458278724, 0.11402359108781127, 0.02708606378331149, 0.024464831804281346, 0.023154215814766274, 0.02053298383573613, 0.019222367846221056, 0.019222367846221056, 0.019222367846221056, 0.019222367846221056, 0.01834862385321101, 0.01834862385321101, 0.017911751856705984, 0.01747487986020096, 0.01747487986020096, 0.016601135867190912, 0.015727391874180863, 0.054608999563128, 0.07514198339886413, 0.049366535605067714, 0.01616426387068589, 0.014853647881170816, 0.01529051987767584, 0.8597640891218873, 0.013543031891655745, 0.013543031891655745, 0.01310615989515072, 0.01310615989515072, 0.01310615989515072, 0.012669287898645697, 0.011795543905635648, 0.011358671909130624, 0.011358671909130624, 0.011358671909130624, 0.011358671909130624, 0.010921799912625601, 0.012669287898645697, 0.012669287898645697, 0.01310615989515072, 0.01310615989515072, 0.012669287898645697, 0.012232415902140673, 0.01310615989515072, 0.01310615989515072, 0.01310615989515072, 0.01310615989515072, 0.944954128440367, 0.012232415902140673, 0.012669287898645697, 0.013979903888160769, 0.013979903888160769, 0.014853647881170816, 0.01529051987767584, 0.013979903888160769, 0.012669287898645697, 0.01310615989515072, 0.013543031891655745, 0.013543031891655745, 0.01310615989515072, 0.01310615989515072, 0.012669287898645697, 0.012232415902140673, 0.011358671909130624, 0.010484927916120577, 0.010048055919615552, 0.011358671909130624, 0.011358671909130624, 0.011358671909130624, 0.010921799912625601, 0.010921799912625601, 0.010921799912625601, 0.010484927916120577, 0.010484927916120577, 0.010484927916120577, 0.010484927916120577, 0.010484927916120577, 0.010484927916120577, 0.010484927916120577, 0.010484927916120577, 0.010921799912625601, 0.010921799912625601, 0.010921799912625601, 0.010921799912625601, 0.01834862385321101, 0.045871559633027525, 0.15771079073831368], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Elong-fact-P_C.gap.json b/pfam_gap_rates/Elong-fact-P_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c58872c8e04915b090e4954042632c3f9c630df6
--- /dev/null
+++ b/pfam_gap_rates/Elong-fact-P_C.gap.json
@@ -0,0 +1 @@
+{"family": "Elong-fact-P_C", "n_seqs": 2516, "length": 56, "gap_rates": [0.15779014308426073, 0.05961844197138315, 0.016693163751987282, 0.014705882352941176, 0.012718600953895072, 0.010731319554848967, 0.010731319554848967, 0.009936406995230525, 0.009538950715421303, 0.009538950715421303, 0.009538950715421303, 0.014705882352941176, 0.009936406995230525, 0.008744038155802861, 0.00794912559618442, 0.00794912559618442, 0.017090620031796504, 0.009538950715421303, 0.005564387917329093, 0.00397456279809221, 0.003179650238473768, 0.003179650238473768, 0.001987281399046105, 0.001987281399046105, 0.0011923688394276629, 0.0011923688394276629, 0.0011923688394276629, 0.0011923688394276629, 0.000794912559618442, 0.0011923688394276629, 0.000794912559618442, 0.000794912559618442, 0.0011923688394276629, 0.001589825119236884, 0.001589825119236884, 0.001589825119236884, 0.0011923688394276629, 0.0011923688394276629, 0.0011923688394276629, 0.0011923688394276629, 0.001589825119236884, 0.001589825119236884, 0.001589825119236884, 0.001987281399046105, 0.0023847376788553257, 0.0027821939586645467, 0.003179650238473768, 0.003179650238473768, 0.003179650238473768, 0.003179650238473768, 0.003179650238473768, 0.003179650238473768, 0.003577106518282989, 0.00397456279809221, 0.010333863275039745, 0.02384737678855326], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Elong_Iki1.gap.json b/pfam_gap_rates/Elong_Iki1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..0ff89ef9e1fa3c3b1a1622d395a146927f558c54
--- /dev/null
+++ b/pfam_gap_rates/Elong_Iki1.gap.json
@@ -0,0 +1 @@
+{"family": "Elong_Iki1", "n_seqs": 202, "length": 398, "gap_rates": [0.5841584158415841, 0.5495049504950495, 0.5346534653465347, 0.5297029702970297, 0.5247524752475248, 0.5198019801980198, 0.5247524752475248, 0.5247524752475248, 0.504950495049505, 0.5, 0.4900990099009901, 0.6584158415841584, 0.4603960396039604, 0.43564356435643564, 0.4306930693069307, 0.41089108910891087, 0.40594059405940597, 0.40594059405940597, 0.40594059405940597, 0.40594059405940597, 0.400990099009901, 0.400990099009901, 0.400990099009901, 0.400990099009901, 0.400990099009901, 0.39603960396039606, 0.39603960396039606, 0.39603960396039606, 0.39603960396039606, 0.39603960396039606, 0.400990099009901, 0.400990099009901, 0.40594059405940597, 0.40594059405940597, 0.40594059405940597, 0.41089108910891087, 0.4207920792079208, 0.4306930693069307, 0.4752475247524752, 0.4158415841584158, 0.39603960396039606, 0.3811881188118812, 0.3811881188118812, 0.3811881188118812, 0.3811881188118812, 0.3811881188118812, 0.3910891089108911, 0.3811881188118812, 0.3811881188118812, 0.3811881188118812, 0.9455445544554455, 0.3910891089108911, 0.39603960396039606, 0.3910891089108911, 0.37623762376237624, 0.7772277227722773, 0.806930693069307, 0.8168316831683168, 0.8168316831683168, 0.8217821782178217, 0.8316831683168316, 0.8861386138613861, 0.9207920792079208, 0.9356435643564357, 0.9405940594059405, 0.9455445544554455, 0.9356435643564357, 0.9257425742574258, 0.905940594059406, 0.8366336633663366, 0.8267326732673267, 0.8217821782178217, 0.8168316831683168, 0.8118811881188119, 0.806930693069307, 0.7772277227722773, 0.37623762376237624, 0.39603960396039606, 0.39603960396039606, 0.38613861386138615, 0.3811881188118812, 0.3712871287128713, 0.36633663366336633, 0.3564356435643564, 0.3564356435643564, 0.35148514851485146, 0.7326732673267327, 0.7227722772277227, 0.39603960396039606, 0.40594059405940597, 0.4801980198019802, 0.41089108910891087, 0.3316831683168317, 0.31683168316831684, 0.31683168316831684, 0.31683168316831684, 0.31683168316831684, 0.3118811881188119, 0.3069306930693069, 0.3069306930693069, 0.3069306930693069, 0.3069306930693069, 0.31683168316831684, 0.31683168316831684, 0.3564356435643564, 0.3465346534653465, 0.3910891089108911, 0.4405940594059406, 0.4603960396039604, 0.5148514851485149, 0.5643564356435643, 0.7871287128712872, 0.4306930693069307, 0.7970297029702971, 0.8564356435643564, 0.9158415841584159, 0.9356435643564357, 0.8910891089108911, 0.8217821782178217, 0.7970297029702971, 0.28217821782178215, 0.2524752475247525, 0.24257425742574257, 0.24257425742574257, 0.23267326732673269, 0.22772277227722773, 0.22772277227722773, 0.22277227722772278, 0.22277227722772278, 0.22277227722772278, 0.22277227722772278, 0.3217821782178218, 0.3217821782178218, 0.3316831683168317, 0.3811881188118812, 0.8712871287128713, 0.9405940594059405, 0.900990099009901, 0.8366336633663366, 0.25742574257425743, 0.3465346534653465, 0.2376237623762376, 0.22277227722772278, 0.21287128712871287, 0.21287128712871287, 0.21287128712871287, 0.21287128712871287, 0.21287128712871287, 0.21287128712871287, 0.21287128712871287, 0.21287128712871287, 0.21287128712871287, 0.21287128712871287, 0.21287128712871287, 0.48514851485148514, 0.2524752475247525, 0.21287128712871287, 0.8118811881188119, 0.8465346534653465, 0.8910891089108911, 0.9207920792079208, 0.9455445544554455, 0.9455445544554455, 0.8960396039603961, 0.8564356435643564, 0.8267326732673267, 0.7029702970297029, 0.19801980198019803, 0.20297029702970298, 0.9405940594059405, 0.20297029702970298, 0.19801980198019803, 0.19306930693069307, 0.19801980198019803, 0.19801980198019803, 0.19801980198019803, 0.19801980198019803, 0.19801980198019803, 0.19306930693069307, 0.19306930693069307, 0.5099009900990099, 0.5148514851485149, 0.5693069306930693, 0.6782178217821783, 0.8366336633663366, 0.8960396039603961, 0.9207920792079208, 0.9405940594059405, 0.9306930693069307, 0.9108910891089109, 0.8811881188118812, 0.7376237623762376, 0.5891089108910891, 0.5346534653465347, 0.5099009900990099, 0.47029702970297027, 0.4504950495049505, 0.20297029702970298, 0.20297029702970298, 0.19801980198019803, 0.19801980198019803, 0.19306930693069307, 0.20297029702970298, 0.19801980198019803, 0.19801980198019803, 0.19801980198019803, 0.19801980198019803, 0.19801980198019803, 0.19801980198019803, 0.20297029702970298, 0.20297029702970298, 0.20297029702970298, 0.20297029702970298, 0.20297029702970298, 0.20297029702970298, 0.21287128712871287, 0.21287128712871287, 0.8663366336633663, 0.9108910891089109, 0.9405940594059405, 0.9257425742574258, 0.905940594059406, 0.8316831683168316, 0.23267326732673269, 0.3118811881188119, 0.3217821782178218, 0.3217821782178218, 0.3465346534653465, 0.3118811881188119, 0.33663366336633666, 0.3316831683168317, 0.33663366336633666, 0.4158415841584158, 0.3811881188118812, 0.3910891089108911, 0.3712871287128713, 0.3811881188118812, 0.37623762376237624, 0.37623762376237624, 0.3415841584158416, 0.3415841584158416, 0.33663366336633666, 0.3316831683168317, 0.3316831683168317, 0.3415841584158416, 0.504950495049505, 0.4900990099009901, 0.3613861386138614, 0.36633663366336633, 0.504950495049505, 0.400990099009901, 0.38613861386138615, 0.37623762376237624, 0.36633663366336633, 0.3712871287128713, 0.3712871287128713, 0.6732673267326733, 0.6831683168316832, 0.6881188118811881, 0.7871287128712872, 0.801980198019802, 0.8861386138613861, 0.9405940594059405, 0.9306930693069307, 0.8514851485148515, 0.7970297029702971, 0.7475247524752475, 0.6881188118811881, 0.6732673267326733, 0.6683168316831684, 0.6485148514851485, 0.5841584158415841, 0.5445544554455446, 0.4900990099009901, 0.29207920792079206, 0.27722772277227725, 0.2623762376237624, 0.25742574257425743, 0.2524752475247525, 0.25742574257425743, 0.25742574257425743, 0.2524752475247525, 0.2524752475247525, 0.25742574257425743, 0.25742574257425743, 0.25742574257425743, 0.25742574257425743, 0.25742574257425743, 0.2524752475247525, 0.2524752475247525, 0.2524752475247525, 0.25742574257425743, 0.2524752475247525, 0.2524752475247525, 0.2524752475247525, 0.2524752475247525, 0.25742574257425743, 0.27722772277227725, 0.2524752475247525, 0.2524752475247525, 0.2524752475247525, 0.3118811881188119, 0.3316831683168317, 0.9306930693069307, 0.9108910891089109, 0.5297029702970297, 0.7079207920792079, 0.7029702970297029, 0.698019801980198, 0.7326732673267327, 0.8762376237623762, 0.6881188118811881, 0.5841584158415841, 0.5099009900990099, 0.49504950495049505, 0.4405940594059406, 0.41089108910891087, 0.4306930693069307, 0.9405940594059405, 0.8564356435643564, 0.36633663366336633, 0.32673267326732675, 0.28217821782178215, 0.27722772277227725, 0.5297029702970297, 0.4752475247524752, 0.41089108910891087, 0.2524752475247525, 0.2524752475247525, 0.2524752475247525, 0.27722772277227725, 0.5693069306930693, 0.5297029702970297, 0.5297029702970297, 0.5297029702970297, 0.5297029702970297, 0.5247524752475248, 0.5198019801980198, 0.5297029702970297, 0.504950495049505, 0.5148514851485149, 0.43564356435643564, 0.6039603960396039, 0.7277227722772277, 0.8316831683168316, 0.8910891089108911, 0.9356435643564357, 0.9158415841584159, 0.8663366336633663, 0.7871287128712872, 0.6485148514851485, 0.5891089108910891, 0.2623762376237624, 0.26732673267326734, 0.2623762376237624, 0.16336633663366337, 0.15841584158415842, 0.15841584158415842, 0.15841584158415842, 0.15841584158415842, 0.15841584158415842, 0.15841584158415842, 0.15841584158415842, 0.15841584158415842, 0.15841584158415842, 0.15841584158415842, 0.15841584158415842, 0.15841584158415842, 0.15841584158415842, 0.15841584158415842, 0.15841584158415842, 0.15841584158415842, 0.15841584158415842, 0.15841584158415842, 0.15841584158415842, 0.15841584158415842, 0.25742574257425743, 0.3069306930693069, 0.32673267326732675, 0.32673267326732675, 0.44554455445544555, 0.3712871287128713, 0.38613861386138615, 0.4504950495049505, 0.5742574257425742, 0.8663366336633663, 0.9306930693069307, 0.900990099009901, 0.8316831683168316, 0.42574257425742573, 0.39603960396039606, 0.39603960396039606, 0.39603960396039606, 0.39603960396039606, 0.39603960396039606, 0.400990099009901, 0.400990099009901, 0.5], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Endonuclease_5.gap.json b/pfam_gap_rates/Endonuclease_5.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b58eb44eccb798027ae10c2a690e5a8bc1107620
--- /dev/null
+++ b/pfam_gap_rates/Endonuclease_5.gap.json
@@ -0,0 +1 @@
+{"family": "Endonuclease_5", "n_seqs": 554, "length": 242, "gap_rates": [0.7021660649819494, 0.5740072202166066, 0.5144404332129964, 0.48375451263537905, 0.4711191335740072, 0.44584837545126355, 0.42418772563176893, 0.40974729241877256, 0.3935018050541516, 0.3700361010830325, 0.35018050541516244, 0.33754512635379064, 0.31227436823104693, 0.2870036101083033, 0.2003610108303249, 0.7545126353790613, 0.9386281588447654, 0.907942238267148, 0.6209386281588448, 0.15162454873646208, 0.13357400722021662, 0.10649819494584838, 0.09747292418772563, 0.08483754512635379, 0.07942238267148015, 0.0776173285198556, 0.0776173285198556, 0.0776173285198556, 0.0776173285198556, 0.2743682310469314, 0.26534296028880866, 0.22563176895306858, 0.11371841155234658, 0.12274368231046931, 0.33935018050541516, 0.22382671480144403, 0.11371841155234658, 0.8808664259927798, 0.06498194945848375, 0.061371841155234655, 0.05956678700361011, 0.061371841155234655, 0.0631768953068592, 0.05776173285198556, 0.052346570397111915, 0.05415162454873646, 0.09747292418772563, 0.0740072202166065, 0.052346570397111915, 0.04693140794223827, 0.04693140794223827, 0.05054151624548736, 0.04151624548736462, 0.039711191335740074, 0.04151624548736462, 0.039711191335740074, 0.03790613718411552, 0.039711191335740074, 0.03790613718411552, 0.032490974729241874, 0.030685920577617327, 0.030685920577617327, 0.032490974729241874, 0.032490974729241874, 0.032490974729241874, 0.03429602888086643, 0.03429602888086643, 0.03429602888086643, 0.03429602888086643, 0.03429602888086643, 0.03429602888086643, 0.03429602888086643, 0.03429602888086643, 0.03429602888086643, 0.032490974729241874, 0.032490974729241874, 0.032490974729241874, 0.032490974729241874, 0.032490974729241874, 0.032490974729241874, 0.032490974729241874, 0.032490974729241874, 0.032490974729241874, 0.032490974729241874, 0.03429602888086643, 0.03429602888086643, 0.03790613718411552, 0.04332129963898917, 0.8989169675090253, 0.944043321299639, 0.9205776173285198, 0.871841155234657, 0.06678700361010831, 0.7779783393501805, 0.7942238267148014, 0.8086642599277978, 0.7833935018050542, 0.759927797833935, 0.04693140794223827, 0.036101083032490974, 0.036101083032490974, 0.03790613718411552, 0.039711191335740074, 0.04151624548736462, 0.04151624548736462, 0.03790613718411552, 0.03790613718411552, 0.039711191335740074, 0.04332129963898917, 0.04332129963898917, 0.04332129963898917, 0.04151624548736462, 0.04512635379061372, 0.052346570397111915, 0.048736462093862815, 0.048736462093862815, 0.048736462093862815, 0.04693140794223827, 0.04693140794223827, 0.04693140794223827, 0.04693140794223827, 0.04512635379061372, 0.04151624548736462, 0.04151624548736462, 0.04151624548736462, 0.04151624548736462, 0.04332129963898917, 0.04332129963898917, 0.04332129963898917, 0.04332129963898917, 0.04332129963898917, 0.04332129963898917, 0.04332129963898917, 0.04332129963898917, 0.04332129963898917, 0.04332129963898917, 0.04512635379061372, 0.061371841155234655, 0.7545126353790613, 0.7671480144404332, 0.7743682310469314, 0.8140794223826715, 0.8574007220216606, 0.9476534296028881, 0.9368231046931408, 0.8212996389891697, 0.8050541516245487, 0.7743682310469314, 0.7545126353790613, 0.7509025270758123, 0.048736462093862815, 0.9151624548736462, 0.8971119133574007, 0.09566787003610108, 0.11371841155234658, 0.11010830324909747, 0.9205776173285198, 0.11913357400722022, 0.13176895306859207, 0.148014440433213, 0.16064981949458484, 0.14620938628158844, 0.148014440433213, 0.1552346570397112, 0.15342960288808663, 0.1263537906137184, 0.9332129963898917, 0.9386281588447654, 0.9404332129963899, 0.9404332129963899, 0.9422382671480144, 0.9476534296028881, 0.9494584837545126, 0.9494584837545126, 0.944043321299639, 0.9404332129963899, 0.9404332129963899, 0.9404332129963899, 0.9386281588447654, 0.9314079422382672, 0.11552346570397112, 0.11010830324909747, 0.11010830324909747, 0.11010830324909747, 0.6841155234657039, 0.9097472924187726, 0.17509025270758122, 0.13176895306859207, 0.12274368231046931, 0.12093862815884476, 0.12274368231046931, 0.11732851985559567, 0.11732851985559567, 0.11732851985559567, 0.11913357400722022, 0.12274368231046931, 0.12454873646209386, 0.1371841155234657, 0.1407942238267148, 0.1407942238267148, 0.14981949458483754, 0.17509025270758122, 0.7707581227436823, 0.12815884476534295, 0.12093862815884476, 0.12093862815884476, 0.11913357400722022, 0.12274368231046931, 0.11913357400722022, 0.12274368231046931, 0.12454873646209386, 0.12274368231046931, 0.12274368231046931, 0.12274368231046931, 0.12274368231046931, 0.12093862815884476, 0.11913357400722022, 0.11913357400722022, 0.11913357400722022, 0.11913357400722022, 0.11913357400722022, 0.12093862815884476, 0.12093862815884476, 0.12093862815884476, 0.12093862815884476, 0.12454873646209386, 0.12815884476534295, 0.37364620938628157, 0.9368231046931408, 0.13176895306859207, 0.12815884476534295, 0.12815884476534295, 0.1299638989169675, 0.1299638989169675, 0.13176895306859207, 0.13357400722021662, 0.13357400722021662, 0.13357400722021662, 0.13357400722021662, 0.1552346570397112, 0.1624548736462094, 0.6967509025270758], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/EthD.gap.json b/pfam_gap_rates/EthD.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..fd9e74b711e191c39aa36ca705c24602b5e460aa
--- /dev/null
+++ b/pfam_gap_rates/EthD.gap.json
@@ -0,0 +1 @@
+{"family": "EthD", "n_seqs": 539, "length": 111, "gap_rates": [0.6233766233766234, 0.37291280148423006, 0.30612244897959184, 0.21335807050092764, 0.1836734693877551, 0.15955473098330242, 0.15584415584415584, 0.15213358070500926, 0.06307977736549165, 0.03339517625231911, 0.03339517625231911, 0.03339517625231911, 0.03339517625231911, 0.03153988868274583, 0.08905380333951762, 0.03153988868274583, 0.029684601113172542, 0.029684601113172542, 0.027829313543599257, 0.027829313543599257, 0.027829313543599257, 0.027829313543599257, 0.027829313543599257, 0.027829313543599257, 0.027829313543599257, 0.6456400742115028, 0.9165120593692022, 0.935064935064935, 0.8831168831168831, 0.5825602968460112, 0.5510204081632653, 0.8070500927643784, 0.43042671614100186, 0.42857142857142855, 0.42115027829313545, 0.42857142857142855, 0.4174397031539889, 0.49165120593692024, 0.5009276437847866, 0.8348794063079777, 0.9313543599257885, 0.9406307977736549, 0.8868274582560297, 0.7792207792207793, 0.6549165120593692, 0.6103896103896104, 0.5176252319109462, 0.2653061224489796, 0.17810760667903525, 0.16512059369202226, 0.14285714285714285, 0.10575139146567718, 0.07050092764378478, 0.061224489795918366, 0.061224489795918366, 0.03896103896103896, 0.08348794063079777, 0.03153988868274583, 0.025974025974025976, 0.016697588126159554, 0.012987012987012988, 0.012987012987012988, 0.00927643784786642, 0.0074211502782931356, 0.0055658627087198514, 0.0018552875695732839, 0.0018552875695732839, 0.0037105751391465678, 0.0018552875695732839, 0.0018552875695732839, 0.0018552875695732839, 0.0018552875695732839, 0.0037105751391465678, 0.0037105751391465678, 0.0037105751391465678, 0.8719851576994434, 0.8775510204081632, 0.8701298701298701, 0.0037105751391465678, 0.0037105751391465678, 0.0055658627087198514, 0.0074211502782931356, 0.00927643784786642, 0.00927643784786642, 0.011131725417439703, 0.016697588126159554, 0.022263450834879406, 0.022263450834879406, 0.03710575139146568, 0.03339517625231911, 0.07421150278293136, 0.06493506493506493, 0.06493506493506493, 0.05194805194805195, 0.13172541743970315, 0.44712430426716143, 0.9313543599257885, 0.9332096474953617, 0.9276437847866419, 0.09647495361781076, 0.11688311688311688, 0.12244897959183673, 0.1261595547309833, 0.13358070500927643, 0.15213358070500926, 0.16883116883116883, 0.19109461966604824, 0.21335807050092764, 0.4359925788497217, 0.575139146567718, 0.87569573283859], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/ExbD.gap.json b/pfam_gap_rates/ExbD.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..af4bcfa17710d67710e943c4b09687eed127574c
--- /dev/null
+++ b/pfam_gap_rates/ExbD.gap.json
@@ -0,0 +1 @@
+{"family": "ExbD", "n_seqs": 3237, "length": 171, "gap_rates": [0.7615075687364844, 0.5542168674698795, 0.3812171763978993, 0.219956750077232, 0.11986407167130059, 0.07568736484399136, 0.05869632375656472, 0.04633920296570899, 0.026876737720111215, 0.024096385542168676, 0.021316033364226137, 0.01699104108742663, 0.01699104108742663, 0.016373185047883845, 0.014519616929255484, 0.013592832869941304, 0.013283904850169911, 0.011739264751312943, 0.011121408711770158, 0.011121408711770158, 0.010812480691998765, 0.010812480691998765, 0.010194624652455977, 0.008649984553599012, 0.008649984553599012, 0.9020698177324683, 0.007723200494284831, 0.0074142724745134385, 0.008032128514056224, 0.007105344454742045, 0.0074142724745134385, 0.0074142724745134385, 0.007105344454742045, 0.008341056533827619, 0.42106889094840905, 0.05622489959839357, 0.9357429718875502, 0.008032128514056224, 0.007105344454742045, 0.006178560395427865, 0.005869632375656472, 0.006487488415199258, 0.005560704355885079, 0.004324992276799506, 0.004324992276799506, 0.004633920296570899, 0.004633920296570899, 0.006178560395427865, 0.5665739882607352, 0.8785912882298424, 0.9329626197096077, 0.9110287303058388, 0.8211306765523633, 0.3753475440222428, 0.0639481000926784, 0.01050355267222737, 0.006796416434970652, 0.006487488415199258, 0.005869632375656472, 0.006487488415199258, 0.005869632375656472, 0.006796416434970652, 0.0074142724745134385, 0.008341056533827619, 0.0074142724745134385, 0.006796416434970652, 0.9462465245597775, 0.01050355267222737, 0.016682113067655237, 0.03861600247142416, 0.012974976830398516, 0.9409947482236639, 0.010194624652455977, 0.006487488415199258, 0.8591288229842446, 0.8751930800123571, 0.8995983935742972, 0.9067037380290393, 0.9184430027803522, 0.9283286994130368, 0.9360518999073216, 0.9447018844609206, 0.9477911646586346, 0.9391411801050356, 0.933271547729379, 0.9227679950571517, 0.9131912264442384, 0.9036144578313253, 0.8832252085264134, 0.8717948717948718, 0.8578931109051591, 0.006487488415199258, 0.02255174544331171, 0.02471424158171146, 0.025023169601482854, 0.026876737720111215, 0.9215322829780661, 0.9499536607970342, 0.884460920605499, 0.0596231078158789, 0.8912573370404696, 0.9051590979301822, 0.8368860055607044, 0.02842137781896818, 0.0228606734630831, 0.019462465245597776, 0.018535681186283594, 0.017608897126969416, 0.017608897126969416, 0.0182267531665122, 0.019153537225826384, 0.01884460920605499, 0.020698177324683348, 0.020698177324683348, 0.021316033364226137, 0.02255174544331171, 0.024096385542168676, 0.025023169601482854, 0.03892493049119555, 0.062403459993821436, 0.0688909484090207, 0.07105344454742045, 0.8279270929873339, 0.8649984553599012, 0.9079394501081248, 0.9212233549582948, 0.9385233240654928, 0.9468643805993203, 0.9409947482236639, 0.929255483472351, 0.9141180105035527, 0.8983626814952116, 0.8498609823911029, 0.80043249922768, 0.7167130058696324, 0.05591597157862218, 0.010812480691998765, 0.009576768612913192, 0.009885696632684585, 0.010194624652455977, 0.011121408711770158, 0.01143033673154155, 0.011121408711770158, 0.011121408711770158, 0.012048192771084338, 0.012048192771084338, 0.012048192771084338, 0.012048192771084338, 0.01235712079085573, 0.01235712079085573, 0.013283904850169911, 0.013283904850169911, 0.013283904850169911, 0.014828544949026877, 0.015446400988569663, 0.015755329008341055, 0.016373185047883845, 0.02162496138399753, 0.031819586036453504, 0.041396354649366696, 0.08032128514056225, 0.08063021316033364, 0.08680877355576151, 0.11275872721655854, 0.10256410256410256, 0.11368551127587272, 0.12326227988878591, 0.16187828236021007, 0.2786530738337967, 0.3852332406549274, 0.7136237256719185], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Exonuc_V_gamma.gap.json b/pfam_gap_rates/Exonuc_V_gamma.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b1d43021fbc37cd991fa0ccd6ca7e0917a4951f9
--- /dev/null
+++ b/pfam_gap_rates/Exonuc_V_gamma.gap.json
@@ -0,0 +1 @@
+{"family": "Exonuc_V_gamma", "n_seqs": 539, "length": 915, "gap_rates": [0.7179962894248608, 0.5027829313543599, 0.47680890538033394, 0.46382189239332094, 0.4582560296846011, 0.4582560296846011, 0.4582560296846011, 0.45640074211502785, 0.45454545454545453, 0.45083487940630795, 0.44712430426716143, 0.44341372912801486, 0.44155844155844154, 0.44155844155844154, 0.43413729128014844, 0.43413729128014844, 0.4322820037105751, 0.43042671614100186, 0.43042671614100186, 0.43042671614100186, 0.43042671614100186, 0.42857142857142855, 0.5844155844155844, 0.43413729128014844, 0.42857142857142855, 0.42857142857142855, 0.43042671614100186, 0.62152133580705, 0.42115027829313545, 0.42115027829313545, 0.42115027829313545, 0.42115027829313545, 0.42115027829313545, 0.42115027829313545, 0.41929499072356213, 0.41929499072356213, 0.41929499072356213, 0.41929499072356213, 0.41929499072356213, 0.41929499072356213, 0.41929499072356213, 0.41187384044526903, 0.41187384044526903, 0.41187384044526903, 0.41187384044526903, 0.41187384044526903, 0.41187384044526903, 0.41187384044526903, 0.41187384044526903, 0.41187384044526903, 0.41187384044526903, 0.8330241187384044, 0.8571428571428571, 0.8831168831168831, 0.9239332096474954, 0.8942486085343229, 0.8608534322820037, 0.8515769944341373, 0.8311688311688312, 0.41187384044526903, 0.41187384044526903, 0.4137291280148423, 0.41187384044526903, 0.41187384044526903, 0.41187384044526903, 0.41187384044526903, 0.4137291280148423, 0.4137291280148423, 0.4137291280148423, 0.4137291280148423, 0.4137291280148423, 0.4137291280148423, 0.4155844155844156, 0.4137291280148423, 0.4137291280148423, 0.4137291280148423, 0.4155844155844156, 0.4155844155844156, 0.4155844155844156, 0.4155844155844156, 0.4100185528756957, 0.4100185528756957, 0.41929499072356213, 0.4267161410018553, 0.4675324675324675, 0.4619666048237477, 0.49165120593692024, 0.8775510204081632, 0.849721706864564, 0.48608534322820035, 0.47309833024118736, 0.43042671614100186, 0.42115027829313545, 0.4230055658627087, 0.4155844155844156, 0.41187384044526903, 0.4100185528756957, 0.4100185528756957, 0.40816326530612246, 0.4100185528756957, 0.4100185528756957, 0.40816326530612246, 0.4100185528756957, 0.4100185528756957, 0.40816326530612246, 0.40816326530612246, 0.40816326530612246, 0.40816326530612246, 0.4100185528756957, 0.9499072356215214, 0.9443413729128015, 0.4137291280148423, 0.4230055658627087, 0.4359925788497217, 0.437847866419295, 0.4267161410018553, 0.4322820037105751, 0.437847866419295, 0.4267161410018553, 0.948051948051948, 0.41929499072356213, 0.41187384044526903, 0.41187384044526903, 0.41187384044526903, 0.41187384044526903, 0.4100185528756957, 0.4100185528756957, 0.4100185528756957, 0.87569573283859, 0.8998144712430427, 0.935064935064935, 0.9406307977736549, 0.9276437847866419, 0.8868274582560297, 0.8719851576994434, 0.47680890538033394, 0.48794063079777367, 0.47866419294990725, 0.47680890538033394, 0.46382189239332094, 0.424860853432282, 0.8571428571428571, 0.9072356215213359, 0.9369202226345084, 0.8738404452690167, 0.8460111317254174, 0.4359925788497217, 0.40630797773654914, 0.40630797773654914, 0.40630797773654914, 0.40630797773654914, 0.40630797773654914, 0.40630797773654914, 0.40630797773654914, 0.40630797773654914, 0.40630797773654914, 0.40630797773654914, 0.40816326530612246, 0.40816326530612246, 0.40816326530612246, 0.40630797773654914, 0.40630797773654914, 0.40630797773654914, 0.40816326530612246, 0.4100185528756957, 0.4100185528756957, 0.41187384044526903, 0.4137291280148423, 0.4137291280148423, 0.4137291280148423, 0.4137291280148423, 0.41187384044526903, 0.4100185528756957, 0.4100185528756957, 0.4100185528756957, 0.4100185528756957, 0.41187384044526903, 0.7031539888682746, 0.8033395176252319, 0.8293135435992579, 0.9369202226345084, 0.9443413729128015, 0.922077922077922, 0.8218923933209648, 0.7866419294990723, 0.6883116883116883, 0.6679035250463822, 0.6493506493506493, 0.5732838589981447, 0.5287569573283859, 0.5102040816326531, 0.4972170686456401, 0.48794063079777367, 0.47866419294990725, 0.46567717996289426, 0.424860853432282, 0.42115027829313545, 0.41929499072356213, 0.4174397031539889, 0.4230055658627087, 0.4174397031539889, 0.4155844155844156, 0.4155844155844156, 0.4137291280148423, 0.4137291280148423, 0.4137291280148423, 0.4137291280148423, 0.4137291280148423, 0.4137291280148423, 0.4137291280148423, 0.4137291280148423, 0.4137291280148423, 0.4137291280148423, 0.4137291280148423, 0.4155844155844156, 0.4174397031539889, 0.45083487940630795, 0.4582560296846011, 0.46382189239332094, 0.4675324675324675, 0.6122448979591837, 0.7050092764378478, 0.6957328385899815, 0.6753246753246753, 0.647495361781076, 0.6103896103896104, 0.5510204081632653, 0.5064935064935064, 0.48608534322820035, 0.45083487940630795, 0.44341372912801486, 0.4489795918367347, 0.44155844155844154, 0.5510204081632653, 0.5250463821892394, 0.9090909090909091, 0.8701298701298701, 0.4322820037105751, 0.42115027829313545, 0.4155844155844156, 0.4174397031539889, 0.41187384044526903, 0.41187384044526903, 0.41187384044526903, 0.4100185528756957, 0.41187384044526903, 0.41187384044526903, 0.4155844155844156, 0.41187384044526903, 0.4100185528756957, 0.40816326530612246, 0.40816326530612246, 0.40816326530612246, 0.40630797773654914, 0.40816326530612246, 0.40816326530612246, 0.40816326530612246, 0.40816326530612246, 0.4100185528756957, 0.4100185528756957, 0.4100185528756957, 0.4100185528756957, 0.4100185528756957, 0.4100185528756957, 0.4100185528756957, 0.41187384044526903, 0.41187384044526903, 0.4100185528756957, 0.4100185528756957, 0.4137291280148423, 0.4137291280148423, 0.4100185528756957, 0.41187384044526903, 0.4137291280148423, 0.4137291280148423, 0.4137291280148423, 0.4137291280148423, 0.4137291280148423, 0.4155844155844156, 0.4230055658627087, 0.4230055658627087, 0.4230055658627087, 0.4267161410018553, 0.43413729128014844, 0.437847866419295, 0.437847866419295, 0.437847866419295, 0.44155844155844154, 0.44155844155844154, 0.437847866419295, 0.437847866419295, 0.43413729128014844, 0.43413729128014844, 0.43042671614100186, 0.4322820037105751, 0.4359925788497217, 0.4359925788497217, 0.7012987012987013, 0.725417439703154, 0.7662337662337663, 0.7847866419294991, 0.7996289424860853, 0.8979591836734694, 0.9165120593692022, 0.9202226345083488, 0.922077922077922, 0.9239332096474954, 0.9332096474953617, 0.9313543599257885, 0.922077922077922, 0.9202226345083488, 0.9202226345083488, 0.9053803339517625, 0.8682745825602969, 0.7884972170686456, 0.7736549165120594, 0.738404452690167, 0.7087198515769945, 0.6846011131725418, 0.6289424860853432, 0.614100185528757, 0.5602968460111317, 0.5306122448979592, 0.48237476808905383, 0.4601113172541744, 0.45454545454545453, 0.4489795918367347, 0.44712430426716143, 0.43413729128014844, 0.43042671614100186, 0.43042671614100186, 0.43042671614100186, 0.42857142857142855, 0.42115027829313545, 0.4155844155844156, 0.41187384044526903, 0.41187384044526903, 0.41187384044526903, 0.4137291280148423, 0.4155844155844156, 0.4155844155844156, 0.4174397031539889, 0.4155844155844156, 0.4100185528756957, 0.4100185528756957, 0.40816326530612246, 0.40630797773654914, 0.40630797773654914, 0.4044526901669759, 0.4025974025974026, 0.4044526901669759, 0.4044526901669759, 0.4044526901669759, 0.4025974025974026, 0.4025974025974026, 0.7866419294990723, 0.8404452690166976, 0.8589981447124304, 0.8979591836734694, 0.9332096474953617, 0.9257884972170687, 0.8812615955473099, 0.8552875695732839, 0.8311688311688312, 0.7588126159554731, 0.6808905380333952, 0.6103896103896104, 0.44341372912801486, 0.4267161410018553, 0.4230055658627087, 0.4174397031539889, 0.4100185528756957, 0.4100185528756957, 0.4137291280148423, 0.4155844155844156, 0.40816326530612246, 0.8404452690166976, 0.8886827458256029, 0.9332096474953617, 0.9499072356215214, 0.9387755102040817, 0.922077922077922, 0.8608534322820037, 0.8218923933209648, 0.39888682745825604, 0.4025974025974026, 0.39332096474953615, 0.38589981447124305, 0.38404452690166974, 0.37105751391465674, 0.9424860853432282, 0.948051948051948, 0.9313543599257885, 0.35992578849721707, 0.3562152133580705, 0.35435992578849723, 0.35435992578849723, 0.35435992578849723, 0.3525046382189239, 0.3525046382189239, 0.3525046382189239, 0.35064935064935066, 0.35064935064935066, 0.35064935064935066, 0.7050092764378478, 0.8256029684601113, 0.8664192949907236, 0.8905380333951762, 0.922077922077922, 0.9239332096474954, 0.922077922077922, 0.9146567717996289, 0.87569573283859, 0.8515769944341373, 0.738404452690167, 0.660482374768089, 0.5454545454545454, 0.5120593692022264, 0.47309833024118736, 0.4322820037105751, 0.3970315398886827, 0.3562152133580705, 0.3432282003710575, 0.33766233766233766, 0.32838589981447125, 0.3209647495361781, 0.9257884972170687, 0.31539888682745826, 0.3079777365491651, 0.29684601113172543, 0.287569573283859, 0.274582560296846, 0.2541743970315399, 0.23562152133580705, 0.20037105751391465, 0.19294990723562153, 0.18923933209647495, 0.18738404452690166, 0.1836734693877551, 0.18552875695732837, 0.1836734693877551, 0.18181818181818182, 0.17996289424860853, 0.17625231910946196, 0.17439703153988867, 0.16883116883116883, 0.16697588126159554, 0.16697588126159554, 0.16512059369202226, 0.16512059369202226, 0.16512059369202226, 0.16326530612244897, 0.16326530612244897, 0.16512059369202226, 0.16697588126159554, 0.16883116883116883, 0.16883116883116883, 0.16512059369202226, 0.18923933209647495, 0.18738404452690166, 0.1725417439703154, 0.9332096474953617, 0.9406307977736549, 0.9239332096474954, 0.17810760667903525, 0.2560296846011132, 0.15213358070500926, 0.14471243042671614, 0.14471243042671614, 0.14471243042671614, 0.14471243042671614, 0.14471243042671614, 0.14285714285714285, 0.14285714285714285, 0.14100185528756956, 0.14100185528756956, 0.14100185528756956, 0.1391465677179963, 0.1391465677179963, 0.1391465677179963, 0.1391465677179963, 0.1391465677179963, 0.1391465677179963, 0.1391465677179963, 0.1391465677179963, 0.1391465677179963, 0.137291280148423, 0.137291280148423, 0.137291280148423, 0.137291280148423, 0.8719851576994434, 0.9109461966604824, 0.9461966604823747, 0.9313543599257885, 0.8998144712430427, 0.8701298701298701, 0.3469387755102041, 0.9202226345083488, 0.8701298701298701, 0.5231910946196661, 0.5194805194805194, 0.43042671614100186, 0.8423005565862709, 0.9239332096474954, 0.9443413729128015, 0.9109461966604824, 0.8237476808905381, 0.21150278293135436, 0.15584415584415584, 0.150278293135436, 0.1391465677179963, 0.14100185528756956, 0.14100185528756956, 0.1391465677179963, 0.14100185528756956, 0.14100185528756956, 0.14471243042671614, 0.14842300556586271, 0.14471243042671614, 0.14285714285714285, 0.14285714285714285, 0.14471243042671614, 0.14285714285714285, 0.14100185528756956, 0.14100185528756956, 0.14100185528756956, 0.14100185528756956, 0.14100185528756956, 0.14100185528756956, 0.14100185528756956, 0.14100185528756956, 0.14100185528756956, 0.1391465677179963, 0.1391465677179963, 0.1391465677179963, 0.1391465677179963, 0.1391465677179963, 0.1391465677179963, 0.14100185528756956, 0.14100185528756956, 0.14100185528756956, 0.14100185528756956, 0.14100185528756956, 0.14100185528756956, 0.14285714285714285, 0.14285714285714285, 0.14285714285714285, 0.14285714285714285, 0.14285714285714285, 0.14285714285714285, 0.14285714285714285, 0.14285714285714285, 0.1614100185528757, 0.18923933209647495, 0.23191094619666047, 0.29684601113172543, 0.3432282003710575, 0.3562152133580705, 0.3339517625231911, 0.274582560296846, 0.24675324675324675, 0.24304267161410018, 0.24118738404452691, 0.24304267161410018, 0.24675324675324675, 0.24118738404452691, 0.24118738404452691, 0.24304267161410018, 0.24118738404452691, 0.24118738404452691, 0.24304267161410018, 0.24675324675324675, 0.24675324675324675, 0.24675324675324675, 0.24675324675324675, 0.24860853432282004, 0.2541743970315399, 0.2523191094619666, 0.2560296846011132, 0.2653061224489796, 0.38589981447124305, 0.2987012987012987, 0.30612244897959184, 0.3042671614100185, 0.30241187384044527, 0.30241187384044527, 0.3098330241187384, 0.3116883116883117, 0.31539888682745826, 0.3469387755102041, 0.38404452690166974, 0.9499072356215214, 0.4007421150278293, 0.39517625231910947, 0.38589981447124305, 0.87569573283859, 0.37105751391465674, 0.3395176252319109, 0.3302411873840445, 0.3228200371057514, 0.31910946196660483, 0.31910946196660483, 0.3116883116883117, 0.3098330241187384, 0.3116883116883117, 0.31539888682745826, 0.32653061224489793, 0.3209647495361781, 0.313543599257885, 0.313543599257885, 0.3209647495361781, 0.3228200371057514, 0.3209647495361781, 0.3228200371057514, 0.3172541743970315, 0.31910946196660483, 0.31539888682745826, 0.48608534322820035, 0.8831168831168831, 0.9369202226345084, 0.9499072356215214, 0.9183673469387755, 0.712430426716141, 0.34137291280148424, 0.3320964749536178, 0.3246753246753247, 0.313543599257885, 0.9499072356215214, 0.3228200371057514, 0.3228200371057514, 0.31910946196660483, 0.31539888682745826, 0.3079777365491651, 0.3116883116883117, 0.313543599257885, 0.38404452690166974, 0.35064935064935066, 0.3339517625231911, 0.3320964749536178, 0.3246753246753247, 0.3116883116883117, 0.30612244897959184, 0.3042671614100185, 0.30241187384044527, 0.3042671614100185, 0.3042671614100185, 0.2987012987012987, 0.300556586270872, 0.2949907235621521, 0.2894248608534323, 0.2857142857142857, 0.287569573283859, 0.287569573283859, 0.287569573283859, 0.287569573283859, 0.2857142857142857, 0.287569573283859, 0.2857142857142857, 0.287569573283859, 0.287569573283859, 0.287569573283859, 0.2894248608534323, 0.2857142857142857, 0.2857142857142857, 0.2820037105751391, 0.2820037105751391, 0.2820037105751391, 0.2820037105751391, 0.28014842300556586, 0.28014842300556586, 0.2820037105751391, 0.28014842300556586, 0.2820037105751391, 0.2764378478664193, 0.28014842300556586, 0.287569573283859, 0.2857142857142857, 0.2782931354359926, 0.2820037105751391, 0.2912801484230056, 0.287569573283859, 0.2949907235621521, 0.2949907235621521, 0.29313543599257885, 0.9313543599257885, 0.9443413729128015, 0.8200371057513914, 0.3339517625231911, 0.32653061224489793, 0.30241187384044527, 0.2912801484230056, 0.2820037105751391, 0.287569573283859, 0.28385899814471244, 0.2820037105751391, 0.2782931354359926, 0.9369202226345084, 0.28014842300556586, 0.2764378478664193, 0.2727272727272727, 0.2727272727272727, 0.2764378478664193, 0.274582560296846, 0.274582560296846, 0.274582560296846, 0.274582560296846, 0.274582560296846, 0.2764378478664193, 0.2820037105751391, 0.28385899814471244, 0.28385899814471244, 0.287569573283859, 0.287569573283859, 0.29313543599257885, 0.2987012987012987, 0.29313543599257885, 0.424860853432282, 0.4025974025974026, 0.35992578849721707, 0.38589981447124305, 0.28385899814471244, 0.2820037105751391, 0.2820037105751391, 0.2764378478664193, 0.2764378478664193, 0.2764378478664193, 0.2764378478664193, 0.2764378478664193, 0.274582560296846, 0.274582560296846, 0.274582560296846, 0.274582560296846, 0.274582560296846, 0.274582560296846, 0.274582560296846, 0.274582560296846, 0.274582560296846, 0.2727272727272727, 0.2727272727272727, 0.2727272727272727, 0.849721706864564, 0.3580705009276438, 0.28014842300556586, 0.274582560296846, 0.274582560296846, 0.2727272727272727, 0.2727272727272727, 0.2727272727272727, 0.2727272727272727, 0.2727272727272727, 0.27087198515769945, 0.27087198515769945, 0.27087198515769945, 0.27087198515769945, 0.2690166975881262, 0.27087198515769945, 0.2690166975881262, 0.27087198515769945, 0.2727272727272727, 0.2690166975881262, 0.2690166975881262, 0.2727272727272727, 0.274582560296846, 0.2727272727272727, 0.2727272727272727, 0.2727272727272727, 0.2727272727272727, 0.2727272727272727, 0.274582560296846, 0.274582560296846, 0.274582560296846, 0.274582560296846, 0.28014842300556586, 0.28385899814471244, 0.2857142857142857, 0.28385899814471244, 0.28385899814471244, 0.2857142857142857, 0.2820037105751391, 0.28014842300556586, 0.2782931354359926, 0.2782931354359926, 0.2820037105751391, 0.9387755102040817, 0.2820037105751391, 0.948051948051948, 0.2857142857142857, 0.28385899814471244, 0.2820037105751391, 0.2820037105751391, 0.2857142857142857, 0.9499072356215214, 0.948051948051948, 0.2949907235621521, 0.8905380333951762, 0.9294990723562152, 0.9443413729128015, 0.9499072356215214, 0.9294990723562152, 0.9035250463821892, 0.8868274582560297, 0.2857142857142857, 0.287569573283859, 0.8998144712430427, 0.28385899814471244, 0.2820037105751391, 0.28014842300556586, 0.28014842300556586, 0.2820037105751391, 0.28014842300556586, 0.28014842300556586, 0.2820037105751391, 0.2820037105751391, 0.28014842300556586, 0.28014842300556586, 0.28014842300556586, 0.28014842300556586, 0.2782931354359926, 0.28014842300556586, 0.28014842300556586, 0.2820037105751391, 0.28014842300556586, 0.28014842300556586, 0.28014842300556586, 0.28014842300556586, 0.28014842300556586, 0.28385899814471244, 0.28385899814471244, 0.28385899814471244, 0.2820037105751391, 0.2820037105751391, 0.2857142857142857, 0.2820037105751391, 0.2820037105751391, 0.287569573283859, 0.2912801484230056, 0.2912801484230056, 0.31539888682745826, 0.32653061224489793, 0.3302411873840445, 0.2912801484230056, 0.2912801484230056, 0.2987012987012987, 0.2949907235621521, 0.2949907235621521, 0.2949907235621521, 0.2949907235621521, 0.2949907235621521, 0.29684601113172543, 0.2987012987012987, 0.300556586270872, 0.3079777365491651, 0.3116883116883117, 0.3246753246753247, 0.3302411873840445, 0.3432282003710575, 0.3580705009276438, 0.3692022263450835, 0.37662337662337664, 0.38404452690166974, 0.39517625231910947, 0.5918367346938775, 0.5899814471243042, 0.6567717996289425, 0.8070500927643784, 0.849721706864564, 0.8682745825602969, 0.9461966604823747, 0.9313543599257885, 0.862708719851577, 0.8330241187384044, 0.7662337662337663, 0.5194805194805194, 0.5454545454545454, 0.5009276437847866, 0.46938775510204084, 0.45083487940630795, 0.44712430426716143, 0.46938775510204084, 0.5306122448979592, 0.7291280148423006, 0.8200371057513914, 0.7736549165120594, 0.5658627087198516, 0.47309833024118736, 0.42857142857142855, 0.42857142857142855, 0.42857142857142855, 0.42857142857142855, 0.43042671614100186, 0.43042671614100186, 0.4322820037105751, 0.4322820037105751, 0.43413729128014844, 0.437847866419295, 0.4397031539888683, 0.44155844155844154, 0.4452690166975881, 0.8200371057513914, 0.9128014842300557, 0.8849721706864564, 0.7588126159554731, 0.5714285714285714, 0.5435992578849722, 0.5287569573283859, 0.5324675324675324, 0.5398886827458256, 0.5454545454545454, 0.5510204081632653, 0.5565862708719852, 0.5640074211502782, 0.5825602968460112, 0.6252319109461967, 0.7012987012987013, 0.764378478664193], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Extensin_2.gap.json b/pfam_gap_rates/Extensin_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..6a57fd569e7485cec77847babda3cd8e96e1b0b0
--- /dev/null
+++ b/pfam_gap_rates/Extensin_2.gap.json
@@ -0,0 +1 @@
+{"family": "Extensin_2", "n_seqs": 414, "length": 62, "gap_rates": [0.4033816425120773, 0.36231884057971014, 0.3526570048309179, 0.34299516908212563, 0.34299516908212563, 0.3333333333333333, 0.32367149758454106, 0.321256038647343, 0.3188405797101449, 0.32367149758454106, 0.32608695652173914, 0.321256038647343, 0.8067632850241546, 0.1111111111111111, 0.10628019323671498, 0.05314009661835749, 0.03864734299516908, 0.014492753623188406, 0.00966183574879227, 0.00966183574879227, 0.007246376811594203, 0.007246376811594203, 0.004830917874396135, 0.004830917874396135, 0.004830917874396135, 0.004830917874396135, 0.9468599033816425, 0.8478260869565217, 0.4927536231884058, 0.9178743961352657, 0.004830917874396135, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.9492753623188406, 0.0, 0.004830917874396135, 0.004830917874396135, 0.5676328502415459, 0.5217391304347826, 0.5217391304347826, 0.0024154589371980675, 0.0024154589371980675, 0.026570048309178744, 0.028985507246376812, 0.004830917874396135, 0.717391304347826, 0.8188405797101449, 0.9299516908212561, 0.06280193236714976, 0.024154589371980676, 0.021739130434782608, 0.024154589371980676, 0.024154589371980676, 0.024154589371980676, 0.024154589371980676, 0.03140096618357488, 0.09178743961352658], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/F420_oxidored.gap.json b/pfam_gap_rates/F420_oxidored.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..9480a236e12d5d457955b59777f148ea4018cca4
--- /dev/null
+++ b/pfam_gap_rates/F420_oxidored.gap.json
@@ -0,0 +1 @@
+{"family": "F420_oxidored", "n_seqs": 3296, "length": 108, "gap_rates": [0.45995145631067963, 0.15564320388349515, 0.10800970873786407, 0.07858009708737865, 0.07129854368932038, 0.935376213592233, 0.06887135922330097, 0.06856796116504854, 0.06765776699029126, 0.06735436893203883, 0.05157766990291262, 0.05127427184466019, 0.050970873786407765, 0.050970873786407765, 0.050060679611650484, 0.0491504854368932, 0.0491504854368932, 0.051881067961165046, 0.04824029126213592, 0.04975728155339806, 0.048847087378640776, 0.04733009708737864, 0.07220873786407767, 0.3953276699029126, 0.6331917475728155, 0.3570995145631068, 0.32008495145631066, 0.041868932038834954, 0.031856796116504854, 0.026395631067961164, 0.025182038834951456, 0.28883495145631066, 0.04095873786407767, 0.5464199029126213, 0.039745145631067964, 0.030643203883495146, 0.02487864077669903, 0.025182038834951456, 0.028822815533980584, 0.047026699029126214, 0.04247572815533981, 0.050060679611650484, 0.0345873786407767, 0.030036407766990292, 0.06492718446601942, 0.03246359223300971, 0.03216019417475728, 0.07069174757281553, 0.05461165048543689, 0.8658980582524272, 0.8847087378640777, 0.9268810679611651, 0.9371966019417476, 0.8919902912621359, 0.8783373786407767, 0.8404126213592233, 0.11771844660194175, 0.08464805825242719, 0.03428398058252427, 0.029733009708737865, 0.03307038834951456, 0.6183252427184466, 0.11802184466019418, 0.027609223300970875, 0.020024271844660196, 0.014259708737864078, 0.013956310679611651, 0.015473300970873786, 0.027002427184466018, 0.07311893203883495, 0.014259708737864078, 0.010618932038834952, 0.010012135922330098, 0.010012135922330098, 0.010012135922330098, 0.010012135922330098, 0.009708737864077669, 0.011225728155339806, 0.011225728155339806, 0.012135922330097087, 0.012742718446601941, 0.013046116504854368, 0.014259708737864078, 0.014259708737864078, 0.01516990291262136, 0.01608009708737864, 0.01699029126213592, 0.01972087378640777, 0.019417475728155338, 0.023361650485436893, 0.9408373786407767, 0.8531553398058253, 0.3859223300970874, 0.1966019417475728, 0.11589805825242719, 0.09496359223300971, 0.054004854368932036, 0.053094660194174755, 0.054915048543689324, 0.05764563106796117, 0.06158980582524272, 0.06462378640776699, 0.06947815533980582, 0.08161407766990292, 0.0891990291262136, 0.11256067961165049, 0.15564320388349515, 0.33737864077669905], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/FACT-Spt16_Nlob.gap.json b/pfam_gap_rates/FACT-Spt16_Nlob.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..1afa7fd70790273b712037204eb3b9bf83e70a96
--- /dev/null
+++ b/pfam_gap_rates/FACT-Spt16_Nlob.gap.json
@@ -0,0 +1 @@
+{"family": "FACT-Spt16_Nlob", "n_seqs": 333, "length": 183, "gap_rates": [0.2132132132132132, 0.17117117117117117, 0.15015015015015015, 0.12312312312312312, 0.11711711711711711, 0.11711711711711711, 0.11711711711711711, 0.11711711711711711, 0.11711711711711711, 0.11411411411411411, 0.10510510510510511, 0.10810810810810811, 0.10510510510510511, 0.1021021021021021, 0.0990990990990991, 0.0990990990990991, 0.09309309309309309, 0.09309309309309309, 0.9309309309309309, 0.9369369369369369, 0.9279279279279279, 0.17717717717717718, 0.17717717717717718, 0.17417417417417416, 0.15915915915915915, 0.16216216216216217, 0.22522522522522523, 0.6576576576576577, 0.9099099099099099, 0.6786786786786787, 0.5855855855855856, 0.12612612612612611, 0.10810810810810811, 0.08708708708708708, 0.07807807807807808, 0.05105105105105105, 0.04504504504504504, 0.042042042042042045, 0.042042042042042045, 0.04504504504504504, 0.04504504504504504, 0.042042042042042045, 0.042042042042042045, 0.042042042042042045, 0.2042042042042042, 0.9219219219219219, 0.10510510510510511, 0.08108108108108109, 0.05405405405405406, 0.04504504504504504, 0.04504504504504504, 0.04504504504504504, 0.042042042042042045, 0.04504504504504504, 0.04504504504504504, 0.042042042042042045, 0.04504504504504504, 0.042042042042042045, 0.03303303303303303, 0.03003003003003003, 0.03003003003003003, 0.02702702702702703, 0.02702702702702703, 0.024024024024024024, 0.024024024024024024, 0.024024024024024024, 0.024024024024024024, 0.021021021021021023, 0.021021021021021023, 0.021021021021021023, 0.021021021021021023, 0.024024024024024024, 0.024024024024024024, 0.021021021021021023, 0.03003003003003003, 0.02702702702702703, 0.024024024024024024, 0.933933933933934, 0.021021021021021023, 0.021021021021021023, 0.018018018018018018, 0.021021021021021023, 0.021021021021021023, 0.021021021021021023, 0.024024024024024024, 0.024024024024024024, 0.021021021021021023, 0.021021021021021023, 0.021021021021021023, 0.024024024024024024, 0.024024024024024024, 0.024024024024024024, 0.024024024024024024, 0.024024024024024024, 0.024024024024024024, 0.024024024024024024, 0.024024024024024024, 0.02702702702702703, 0.03303303303303303, 0.2882882882882883, 0.37237237237237236, 0.4624624624624625, 0.8108108108108109, 0.9099099099099099, 0.8858858858858859, 0.5915915915915916, 0.4084084084084084, 0.12012012012012012, 0.06306306306306306, 0.04804804804804805, 0.04504504504504504, 0.03003003003003003, 0.03003003003003003, 0.04804804804804805, 0.04804804804804805, 0.03903903903903904, 0.036036036036036036, 0.5405405405405406, 0.08108108108108109, 0.05405405405405406, 0.04504504504504504, 0.036036036036036036, 0.03903903903903904, 0.02702702702702703, 0.02702702702702703, 0.03003003003003003, 0.02702702702702703, 0.02702702702702703, 0.02702702702702703, 0.02702702702702703, 0.02702702702702703, 0.02702702702702703, 0.02702702702702703, 0.03303303303303303, 0.03303303303303303, 0.042042042042042045, 0.08408408408408409, 0.5675675675675675, 0.8438438438438438, 0.933933933933934, 0.93993993993994, 0.9129129129129129, 0.8048048048048048, 0.5315315315315315, 0.17717717717717718, 0.05105105105105105, 0.04504504504504504, 0.04504504504504504, 0.04804804804804805, 0.04804804804804805, 0.05105105105105105, 0.05105105105105105, 0.05105105105105105, 0.057057057057057055, 0.05405405405405406, 0.057057057057057055, 0.057057057057057055, 0.057057057057057055, 0.06006006006006006, 0.057057057057057055, 0.057057057057057055, 0.06006006006006006, 0.06006006006006006, 0.06006006006006006, 0.06606606606606606, 0.07207207207207207, 0.08108108108108109, 0.08108108108108109, 0.08708708708708708, 0.0960960960960961, 0.1111111111111111, 0.12312312312312312, 0.5525525525525525, 0.933933933933934, 0.6186186186186187, 0.15015015015015015, 0.16216216216216217, 0.15315315315315314, 0.15915915915915915, 0.16516516516516516, 0.1831831831831832, 0.27627627627627627, 0.9009009009009009], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/FAE1_CUT1_RppA.gap.json b/pfam_gap_rates/FAE1_CUT1_RppA.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ca47aaa8f557b61b9bb4117bbee035780389db46
--- /dev/null
+++ b/pfam_gap_rates/FAE1_CUT1_RppA.gap.json
@@ -0,0 +1 @@
+{"family": "FAE1_CUT1_RppA", "n_seqs": 814, "length": 293, "gap_rates": [0.6805896805896806, 0.515970515970516, 0.3968058968058968, 0.3353808353808354, 0.3144963144963145, 0.28746928746928746, 0.27764127764127766, 0.257985257985258, 0.25675675675675674, 0.25675675675675674, 0.25675675675675674, 0.25675675675675674, 0.25675675675675674, 0.25675675675675674, 0.25675675675675674, 0.25675675675675674, 0.25675675675675674, 0.25675675675675674, 0.25675675675675674, 0.25675675675675674, 0.25675675675675674, 0.25184275184275184, 0.25061425061425063, 0.25061425061425063, 0.2457002457002457, 0.24447174447174447, 0.24447174447174447, 0.24447174447174447, 0.24447174447174447, 0.24201474201474202, 0.23832923832923833, 0.23587223587223588, 0.24078624078624078, 0.23955773955773957, 0.23587223587223588, 0.2371007371007371, 0.24324324324324326, 0.25307125307125306, 0.2371007371007371, 0.23832923832923833, 0.22604422604422605, 0.22481572481572482, 0.22604422604422605, 0.22358722358722358, 0.22235872235872237, 0.22113022113022113, 0.22113022113022113, 0.214987714987715, 0.214987714987715, 0.21375921375921375, 0.20884520884520885, 0.20884520884520885, 0.2076167076167076, 0.2076167076167076, 0.20884520884520885, 0.2076167076167076, 0.20638820638820637, 0.20638820638820637, 0.20638820638820637, 0.20638820638820637, 0.2076167076167076, 0.20884520884520885, 0.20515970515970516, 0.20638820638820637, 0.20884520884520885, 0.20638820638820637, 0.2076167076167076, 0.20884520884520885, 0.20515970515970516, 0.20638820638820637, 0.20393120393120392, 0.19901719901719903, 0.19656019656019655, 0.9250614250614251, 0.8034398034398035, 0.19164619164619165, 0.1904176904176904, 0.1855036855036855, 0.1855036855036855, 0.18427518427518427, 0.18304668304668303, 0.18304668304668303, 0.18058968058968058, 0.17936117936117937, 0.17813267813267813, 0.17567567567567569, 0.17567567567567569, 0.17076167076167076, 0.17076167076167076, 0.16584766584766586, 0.16093366093366093, 0.16093366093366093, 0.16216216216216217, 0.16339066339066338, 0.16216216216216217, 0.1597051597051597, 0.1597051597051597, 0.1597051597051597, 0.15847665847665848, 0.15847665847665848, 0.15601965601965603, 0.15601965601965603, 0.15356265356265356, 0.15356265356265356, 0.15356265356265356, 0.1511056511056511, 0.1511056511056511, 0.1511056511056511, 0.15233415233415235, 0.15233415233415235, 0.15601965601965603, 0.1547911547911548, 0.1547911547911548, 0.15601965601965603, 0.15601965601965603, 0.1547911547911548, 0.15601965601965603, 0.1547911547911548, 0.1547911547911548, 0.1547911547911548, 0.1547911547911548, 0.15601965601965603, 0.15724815724815724, 0.15601965601965603, 0.1547911547911548, 0.14742014742014742, 0.1511056511056511, 0.14987714987714987, 0.15233415233415235, 0.15233415233415235, 0.1547911547911548, 0.1547911547911548, 0.14864864864864866, 0.14987714987714987, 0.14987714987714987, 0.15601965601965603, 0.15601965601965603, 0.15724815724815724, 0.15601965601965603, 0.15724815724815724, 0.15601965601965603, 0.15724815724815724, 0.15847665847665848, 0.16093366093366093, 0.16339066339066338, 0.16461916461916462, 0.16461916461916462, 0.16584766584766586, 0.16339066339066338, 0.16339066339066338, 0.16216216216216217, 0.16339066339066338, 0.16461916461916462, 0.16461916461916462, 0.16461916461916462, 0.16584766584766586, 0.16584766584766586, 0.16584766584766586, 0.16584766584766586, 0.16339066339066338, 0.16093366093366093, 0.15847665847665848, 0.15601965601965603, 0.15601965601965603, 0.15724815724815724, 0.8304668304668305, 0.1597051597051597, 0.16216216216216217, 0.15601965601965603, 0.15724815724815724, 0.15601965601965603, 0.15847665847665848, 0.1597051597051597, 0.16093366093366093, 0.16093366093366093, 0.1597051597051597, 0.1597051597051597, 0.16093366093366093, 0.16339066339066338, 0.1683046683046683, 0.1683046683046683, 0.1683046683046683, 0.16953316953316952, 0.1683046683046683, 0.1683046683046683, 0.16953316953316952, 0.16953316953316952, 0.171990171990172, 0.16953316953316952, 0.1683046683046683, 0.1683046683046683, 0.1683046683046683, 0.1683046683046683, 0.16707616707616707, 0.16707616707616707, 0.16707616707616707, 0.16707616707616707, 0.16584766584766586, 0.1597051597051597, 0.1597051597051597, 0.16216216216216217, 0.16093366093366093, 0.16461916461916462, 0.16339066339066338, 0.16461916461916462, 0.16584766584766586, 0.16953316953316952, 0.1732186732186732, 0.17444717444717445, 0.18058968058968058, 0.18427518427518427, 0.32063882063882065, 0.32800982800982803, 0.3181818181818182, 0.20393120393120392, 0.20638820638820637, 0.20515970515970516, 0.20147420147420148, 0.20270270270270271, 0.20147420147420148, 0.20393120393120392, 0.20393120393120392, 0.20393120393120392, 0.20393120393120392, 0.20515970515970516, 0.20515970515970516, 0.2076167076167076, 0.20638820638820637, 0.22113022113022113, 0.2076167076167076, 0.20638820638820637, 0.20515970515970516, 0.20393120393120392, 0.20638820638820637, 0.20884520884520885, 0.20884520884520885, 0.20884520884520885, 0.20884520884520885, 0.21253071253071254, 0.21253071253071254, 0.214987714987715, 0.21621621621621623, 0.21375921375921375, 0.21621621621621623, 0.21744471744471744, 0.21867321867321868, 0.21867321867321868, 0.21867321867321868, 0.21867321867321868, 0.21867321867321868, 0.21867321867321868, 0.21867321867321868, 0.21867321867321868, 0.21744471744471744, 0.21867321867321868, 0.21867321867321868, 0.21007371007371006, 0.21007371007371006, 0.21007371007371006, 0.20884520884520885, 0.20884520884520885, 0.2076167076167076, 0.21007371007371006, 0.21007371007371006, 0.2113022113022113, 0.2113022113022113, 0.214987714987715, 0.214987714987715, 0.214987714987715, 0.21621621621621623, 0.21621621621621623, 0.21621621621621623, 0.21744471744471744, 0.2199017199017199, 0.22727272727272727, 0.22727272727272727, 0.22972972972972974, 0.22972972972972974, 0.22972972972972974, 0.22972972972972974, 0.2321867321867322, 0.23587223587223588, 0.2371007371007371, 0.2371007371007371, 0.24078624078624078, 0.24324324324324326, 0.2542997542997543, 0.2702702702702703, 0.29484029484029484, 0.31203931203931207, 0.34275184275184273, 0.3808353808353808, 0.7628992628992629], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/FA_hydroxylase.gap.json b/pfam_gap_rates/FA_hydroxylase.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..01a5b8a5dbf849bb09c4e127184747d3391d5291
--- /dev/null
+++ b/pfam_gap_rates/FA_hydroxylase.gap.json
@@ -0,0 +1 @@
+{"family": "FA_hydroxylase", "n_seqs": 3498, "length": 171, "gap_rates": [0.7810177244139508, 0.2801600914808462, 0.13836477987421383, 0.07175528873642081, 0.055174385363064606, 0.04974271012006861, 0.04488279016580903, 0.03316180674671241, 0.030588907947398512, 0.030303030303030304, 0.029159519725557463, 0.02858776443682104, 0.02858776443682104, 0.02801600914808462, 0.026872498570611778, 0.026014865637507146, 0.024871355060034305, 0.8010291595197255, 0.024013722126929673, 0.022870211549456832, 0.022298456260720412, 0.038593481989708404, 0.26615208690680386, 0.10577472841623785, 0.8759291023441966, 0.9033733562035449, 0.9208118925100057, 0.9328187535734705, 0.9119496855345912, 0.8776443682104059, 0.8719268153230417, 0.16295025728987994, 0.9042309891366496, 0.8502001143510578, 0.022870211549456832, 0.02172670097198399, 0.0220125786163522, 0.41823899371069184, 0.02086906803887936, 0.019439679817038306, 0.019439679817038306, 0.018296169239565466, 0.018296169239565466, 0.018010291595197257, 0.0903373356203545, 0.05431675242995998, 0.024585477415666093, 0.024299599771297885, 0.02086906803887936, 0.024871355060034305, 0.024871355060034305, 0.04488279016580903, 0.03659233847913093, 0.01972555746140652, 0.017438536306460833, 0.018867924528301886, 0.016009148084619784, 0.018582046883933678, 0.022584333905088624, 0.02029731275014294, 0.02086906803887936, 0.02029731275014294, 0.02144082332761578, 0.023156089193825044, 0.025157232704402517, 0.030588907947398512, 0.6695254431103488, 0.029731275014293884, 0.019439679817038306, 0.014579759862778732, 0.017724413950829045, 0.02144082332761578, 0.012864493996569469, 0.012864493996569469, 0.9431103487707261, 0.9210977701543739, 0.030874785591766724, 0.017724413950829045, 0.018296169239565466, 0.018296169239565466, 0.7670097198399085, 0.9296740994854202, 0.940251572327044, 0.8707833047455689, 0.22641509433962265, 0.017438536306460833, 0.026872498570611778, 0.024299599771297885, 0.011720983419096626, 0.017152658662092625, 0.025157232704402517, 0.011720983419096626, 0.8742138364779874, 0.7910234419668382, 0.012006861063464836, 0.012292738707833047, 0.011720983419096626, 0.011435105774728416, 0.011435105774728416, 0.011720983419096626, 0.011435105774728416, 0.011149228130360206, 0.010863350485991996, 0.010863350485991996, 0.010863350485991996, 0.011149228130360206, 0.010863350485991996, 0.011435105774728416, 0.011435105774728416, 0.8018867924528302, 0.8853630646083476, 0.9199542595769011, 0.8999428244711264, 0.8656375071469411, 0.7415666094911378, 0.2933104631217839, 0.3347627215551744, 0.10005717552887364, 0.06918238993710692, 0.04145225843339051, 0.05431675242995998, 0.05803316180674671, 0.08633504859919955, 0.3181818181818182, 0.8404802744425386, 0.9159519725557461, 0.8873642081189251, 0.8036020583190394, 0.12492853058890795, 0.11492281303602059, 0.10491709548313322, 0.8956546598056032, 0.9293882218410521, 0.8922241280731846, 0.03773584905660377, 0.023441966838193252, 0.01972555746140652, 0.018867924528301886, 0.019153802172670098, 0.01972555746140652, 0.01972555746140652, 0.01972555746140652, 0.02058319039451115, 0.02058319039451115, 0.02086906803887936, 0.02058319039451115, 0.022584333905088624, 0.023727844482561464, 0.024871355060034305, 0.9165237278444825, 0.37735849056603776, 0.029731275014293884, 0.665809033733562, 0.7158376214979989, 0.6383647798742138, 0.031160663236134933, 0.030874785591766724, 0.03230417381360778, 0.04373927958833619, 0.9322469982847341, 0.12864493996569468, 0.07375643224699828, 0.07347055460263008, 0.07489994282447113, 0.07747284162378502, 0.07918810748999429, 0.07918810748999429, 0.08147512864493997, 0.08547741566609492, 0.09748427672955975, 0.1646655231560892], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/FBA_3.gap.json b/pfam_gap_rates/FBA_3.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..5b0843f9cc925d0c7ded8ac04870ec194753f3e1
--- /dev/null
+++ b/pfam_gap_rates/FBA_3.gap.json
@@ -0,0 +1 @@
+{"family": "FBA_3", "n_seqs": 436, "length": 150, "gap_rates": [0.786697247706422, 0.6238532110091743, 0.46788990825688076, 0.3577981651376147, 0.3256880733944954, 0.2889908256880734, 0.28211009174311924, 0.26605504587155965, 0.26376146788990823, 0.25229357798165136, 0.24770642201834864, 0.2545871559633027, 0.25, 0.2591743119266055, 0.8004587155963303, 0.9128440366972477, 0.9495412844036697, 0.9380733944954128, 0.8669724770642202, 0.6697247706422018, 0.44495412844036697, 0.30275229357798167, 0.21100917431192662, 0.15825688073394495, 0.11926605504587157, 0.07568807339449542, 0.06651376146788991, 0.04128440366972477, 0.0389908256880734, 0.0389908256880734, 0.04128440366972477, 0.03669724770642202, 0.03211009174311927, 0.03211009174311927, 0.02981651376146789, 0.027522935779816515, 0.027522935779816515, 0.027522935779816515, 0.02981651376146789, 0.02981651376146789, 0.027522935779816515, 0.027522935779816515, 0.02981651376146789, 0.26605504587155965, 0.7018348623853211, 0.8486238532110092, 0.944954128440367, 0.9036697247706422, 0.7912844036697247, 0.6009174311926605, 0.4380733944954128, 0.33715596330275227, 0.15825688073394495, 0.12614678899082568, 0.08486238532110092, 0.06192660550458716, 0.04357798165137615, 0.03669724770642202, 0.03669724770642202, 0.03669724770642202, 0.034403669724770644, 0.03211009174311927, 0.034403669724770644, 0.03211009174311927, 0.034403669724770644, 0.03211009174311927, 0.03211009174311927, 0.02981651376146789, 0.02981651376146789, 0.02981651376146789, 0.02981651376146789, 0.0481651376146789, 0.0481651376146789, 0.045871559633027525, 0.045871559633027525, 0.04128440366972477, 0.07110091743119266, 0.07568807339449542, 0.13073394495412843, 0.7293577981651376, 0.8371559633027523, 0.9036697247706422, 0.8784403669724771, 0.786697247706422, 0.6055045871559633, 0.4334862385321101, 0.24770642201834864, 0.05045871559633028, 0.02522935779816514, 0.02522935779816514, 0.02522935779816514, 0.02522935779816514, 0.027522935779816515, 0.03211009174311927, 0.9243119266055045, 0.08027522935779817, 0.08027522935779817, 0.08486238532110092, 0.08256880733944955, 0.8899082568807339, 0.10779816513761468, 0.0871559633027523, 0.06880733944954129, 0.08027522935779817, 0.8188073394495413, 0.10321100917431193, 0.1834862385321101, 0.23623853211009174, 0.21788990825688073, 0.3463302752293578, 0.31880733944954126, 0.33256880733944955, 0.3669724770642202, 0.41284403669724773, 0.4541284403669725, 0.4701834862385321, 0.481651376146789, 0.5619266055045872, 0.6100917431192661, 0.6238532110091743, 0.6605504587155964, 0.9105504587155964, 0.6261467889908257, 0.5940366972477065, 0.5802752293577982, 0.5756880733944955, 0.5779816513761468, 0.5802752293577982, 0.5825688073394495, 0.5894495412844036, 0.591743119266055, 0.6100917431192661, 0.6100917431192661, 0.6146788990825688, 0.6192660550458715, 0.6261467889908257, 0.6307339449541285, 0.6376146788990825, 0.6880733944954128, 0.9151376146788991, 0.7660550458715596, 0.7798165137614679, 0.7912844036697247, 0.8004587155963303, 0.8211009174311926, 0.8256880733944955, 0.8325688073394495, 0.8440366972477065, 0.8532110091743119, 0.8944954128440367], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/FBPase_2.gap.json b/pfam_gap_rates/FBPase_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..af35c72ca9bd9008581344fca9778f79dc78a095
--- /dev/null
+++ b/pfam_gap_rates/FBPase_2.gap.json
@@ -0,0 +1 @@
+{"family": "FBPase_2", "n_seqs": 343, "length": 646, "gap_rates": [0.3236151603498542, 0.18658892128279883, 0.16326530612244897, 0.13411078717201166, 0.1282798833819242, 0.12536443148688048, 0.12244897959183673, 0.11661807580174927, 0.11370262390670553, 0.11370262390670553, 0.11078717201166181, 0.11078717201166181, 0.10787172011661808, 0.10204081632653061, 0.09620991253644315, 0.09037900874635568, 0.09037900874635568, 0.08746355685131195, 0.08746355685131195, 0.08746355685131195, 0.08746355685131195, 0.08746355685131195, 0.08746355685131195, 0.08163265306122448, 0.08163265306122448, 0.08163265306122448, 0.08163265306122448, 0.08163265306122448, 0.08163265306122448, 0.08163265306122448, 0.08163265306122448, 0.08163265306122448, 0.08163265306122448, 0.07871720116618076, 0.07871720116618076, 0.07871720116618076, 0.07871720116618076, 0.07871720116618076, 0.07871720116618076, 0.07871720116618076, 0.07871720116618076, 0.07871720116618076, 0.07871720116618076, 0.07871720116618076, 0.07871720116618076, 0.07871720116618076, 0.07871720116618076, 0.07871720116618076, 0.07871720116618076, 0.07871720116618076, 0.07871720116618076, 0.07871720116618076, 0.07871720116618076, 0.07871720116618076, 0.07871720116618076, 0.07871720116618076, 0.07871720116618076, 0.07871720116618076, 0.07871720116618076, 0.07871720116618076, 0.07871720116618076, 0.07871720116618076, 0.07871720116618076, 0.07871720116618076, 0.07871720116618076, 0.07871720116618076, 0.07871720116618076, 0.08746355685131195, 0.09620991253644315, 0.09037900874635568, 0.08163265306122448, 0.07871720116618076, 0.07871720116618076, 0.07871720116618076, 0.07871720116618076, 0.07871720116618076, 0.07871720116618076, 0.07871720116618076, 0.07871720116618076, 0.07871720116618076, 0.07871720116618076, 0.07871720116618076, 0.07871720116618076, 0.08454810495626822, 0.08454810495626822, 0.08454810495626822, 0.07871720116618076, 0.07871720116618076, 0.07871720116618076, 0.08163265306122448, 0.09329446064139942, 0.10204081632653061, 0.11661807580174927, 0.10495626822157435, 0.09620991253644315, 0.08454810495626822, 0.07871720116618076, 0.07871720116618076, 0.8425655976676385, 0.8892128279883382, 0.8221574344023324, 0.08163265306122448, 0.08454810495626822, 0.08454810495626822, 0.08163265306122448, 0.08163265306122448, 0.08163265306122448, 0.07871720116618076, 0.07871720116618076, 0.07871720116618076, 0.07871720116618076, 0.07871720116618076, 0.07871720116618076, 0.07871720116618076, 0.08163265306122448, 0.07871720116618076, 0.07871720116618076, 0.07871720116618076, 0.07871720116618076, 0.07580174927113703, 0.07580174927113703, 0.07871720116618076, 0.08163265306122448, 0.07871720116618076, 0.07580174927113703, 0.07580174927113703, 0.08163265306122448, 0.07580174927113703, 0.07580174927113703, 0.0728862973760933, 0.0728862973760933, 0.0728862973760933, 0.0728862973760933, 0.0728862973760933, 0.0728862973760933, 0.0728862973760933, 0.0728862973760933, 0.0728862973760933, 0.07580174927113703, 0.0728862973760933, 0.0728862973760933, 0.0728862973760933, 0.0728862973760933, 0.0728862973760933, 0.0728862973760933, 0.0728862973760933, 0.0728862973760933, 0.8658892128279884, 0.10495626822157435, 0.09912536443148688, 0.08454810495626822, 0.09912536443148688, 0.09329446064139942, 0.07871720116618076, 0.07871720116618076, 0.07871720116618076, 0.07580174927113703, 0.07580174927113703, 0.07580174927113703, 0.07580174927113703, 0.07580174927113703, 0.07580174927113703, 0.07580174927113703, 0.08454810495626822, 0.08746355685131195, 0.08746355685131195, 0.08746355685131195, 0.08746355685131195, 0.08746355685131195, 0.08746355685131195, 0.08746355685131195, 0.07580174927113703, 0.06705539358600583, 0.06705539358600583, 0.06705539358600583, 0.06705539358600583, 0.06705539358600583, 0.06705539358600583, 0.0641399416909621, 0.0641399416909621, 0.0641399416909621, 0.061224489795918366, 0.061224489795918366, 0.061224489795918366, 0.061224489795918366, 0.061224489795918366, 0.061224489795918366, 0.061224489795918366, 0.061224489795918366, 0.061224489795918366, 0.061224489795918366, 0.05830903790087463, 0.05830903790087463, 0.05830903790087463, 0.05830903790087463, 0.05830903790087463, 0.05830903790087463, 0.05830903790087463, 0.05830903790087463, 0.05830903790087463, 0.05830903790087463, 0.05830903790087463, 0.05830903790087463, 0.05830903790087463, 0.05830903790087463, 0.061224489795918366, 0.061224489795918366, 0.061224489795918366, 0.061224489795918366, 0.061224489795918366, 0.061224489795918366, 0.05830903790087463, 0.05830903790087463, 0.05830903790087463, 0.05830903790087463, 0.05830903790087463, 0.05830903790087463, 0.05830903790087463, 0.05830903790087463, 0.05830903790087463, 0.05830903790087463, 0.05830903790087463, 0.05830903790087463, 0.05830903790087463, 0.05830903790087463, 0.05830903790087463, 0.061224489795918366, 0.061224489795918366, 0.05830903790087463, 0.05830903790087463, 0.05830903790087463, 0.05830903790087463, 0.05830903790087463, 0.05830903790087463, 0.05830903790087463, 0.05830903790087463, 0.05830903790087463, 0.05830903790087463, 0.05830903790087463, 0.05830903790087463, 0.05830903790087463, 0.05539358600583091, 0.05539358600583091, 0.05539358600583091, 0.05539358600583091, 0.05539358600583091, 0.05539358600583091, 0.05539358600583091, 0.05539358600583091, 0.05539358600583091, 0.05539358600583091, 0.05830903790087463, 0.05830903790087463, 0.05830903790087463, 0.05830903790087463, 0.05830903790087463, 0.0641399416909621, 0.07580174927113703, 0.05830903790087463, 0.05830903790087463, 0.05830903790087463, 0.05830903790087463, 0.05830903790087463, 0.05830903790087463, 0.05830903790087463, 0.05830903790087463, 0.05830903790087463, 0.05830903790087463, 0.05830903790087463, 0.05830903790087463, 0.05830903790087463, 0.05830903790087463, 0.05830903790087463, 0.05830903790087463, 0.13994169096209913, 0.18075801749271136, 0.16326530612244897, 0.1661807580174927, 0.3323615160349854, 0.3294460641399417, 0.1749271137026239, 0.17201166180758018, 0.17201166180758018, 0.1661807580174927, 0.16326530612244897, 0.16326530612244897, 0.1661807580174927, 0.1749271137026239, 0.17784256559766765, 0.7959183673469388, 0.4489795918367347, 0.3323615160349854, 0.20408163265306123, 0.20116618075801748, 0.19825072886297376, 0.12536443148688048, 0.10204081632653061, 0.08163265306122448, 0.06997084548104957, 0.06705539358600583, 0.05830903790087463, 0.05830903790087463, 0.05830903790087463, 0.05830903790087463, 0.05830903790087463, 0.05830903790087463, 0.05830903790087463, 0.05830903790087463, 0.05830903790087463, 0.061224489795918366, 0.061224489795918366, 0.061224489795918366, 0.061224489795918366, 0.061224489795918366, 0.061224489795918366, 0.061224489795918366, 0.061224489795918366, 0.061224489795918366, 0.061224489795918366, 0.061224489795918366, 0.061224489795918366, 0.061224489795918366, 0.061224489795918366, 0.0641399416909621, 0.0641399416909621, 0.0641399416909621, 0.0641399416909621, 0.05830903790087463, 0.05830903790087463, 0.061224489795918366, 0.061224489795918366, 0.061224489795918366, 0.061224489795918366, 0.061224489795918366, 0.061224489795918366, 0.061224489795918366, 0.061224489795918366, 0.06997084548104957, 0.08163265306122448, 0.08454810495626822, 0.07871720116618076, 0.07580174927113703, 0.0728862973760933, 0.06705539358600583, 0.0728862973760933, 0.06997084548104957, 0.06997084548104957, 0.0728862973760933, 0.0641399416909621, 0.0641399416909621, 0.0641399416909621, 0.0641399416909621, 0.0641399416909621, 0.0641399416909621, 0.0641399416909621, 0.061224489795918366, 0.061224489795918366, 0.061224489795918366, 0.061224489795918366, 0.061224489795918366, 0.061224489795918366, 0.061224489795918366, 0.0641399416909621, 0.061224489795918366, 0.061224489795918366, 0.061224489795918366, 0.061224489795918366, 0.05830903790087463, 0.05830903790087463, 0.05830903790087463, 0.05830903790087463, 0.05830903790087463, 0.05830903790087463, 0.05830903790087463, 0.061224489795918366, 0.061224489795918366, 0.061224489795918366, 0.061224489795918366, 0.061224489795918366, 0.061224489795918366, 0.061224489795918366, 0.061224489795918366, 0.061224489795918366, 0.061224489795918366, 0.061224489795918366, 0.061224489795918366, 0.061224489795918366, 0.061224489795918366, 0.061224489795918366, 0.061224489795918366, 0.061224489795918366, 0.061224489795918366, 0.061224489795918366, 0.061224489795918366, 0.061224489795918366, 0.061224489795918366, 0.061224489795918366, 0.061224489795918366, 0.0641399416909621, 0.061224489795918366, 0.061224489795918366, 0.061224489795918366, 0.061224489795918366, 0.061224489795918366, 0.061224489795918366, 0.061224489795918366, 0.0641399416909621, 0.0641399416909621, 0.0641399416909621, 0.0641399416909621, 0.0641399416909621, 0.0641399416909621, 0.0641399416909621, 0.0641399416909621, 0.0641399416909621, 0.0641399416909621, 0.0641399416909621, 0.0641399416909621, 0.0641399416909621, 0.0641399416909621, 0.0641399416909621, 0.0641399416909621, 0.0641399416909621, 0.0641399416909621, 0.0641399416909621, 0.0641399416909621, 0.0641399416909621, 0.061224489795918366, 0.061224489795918366, 0.061224489795918366, 0.07871720116618076, 0.9387755102040817, 0.08454810495626822, 0.08163265306122448, 0.08163265306122448, 0.0641399416909621, 0.061224489795918366, 0.061224489795918366, 0.061224489795918366, 0.061224489795918366, 0.061224489795918366, 0.061224489795918366, 0.0641399416909621, 0.0641399416909621, 0.0641399416909621, 0.061224489795918366, 0.061224489795918366, 0.061224489795918366, 0.061224489795918366, 0.061224489795918366, 0.061224489795918366, 0.061224489795918366, 0.061224489795918366, 0.11370262390670553, 0.1661807580174927, 0.21282798833819241, 0.6209912536443148, 0.4314868804664723, 0.119533527696793, 0.07871720116618076, 0.06997084548104957, 0.06997084548104957, 0.0641399416909621, 0.0641399416909621, 0.0641399416909621, 0.0641399416909621, 0.0641399416909621, 0.0641399416909621, 0.061224489795918366, 0.061224489795918366, 0.061224489795918366, 0.061224489795918366, 0.061224489795918366, 0.061224489795918366, 0.061224489795918366, 0.061224489795918366, 0.061224489795918366, 0.061224489795918366, 0.061224489795918366, 0.061224489795918366, 0.061224489795918366, 0.061224489795918366, 0.061224489795918366, 0.16034985422740525, 0.0641399416909621, 0.061224489795918366, 0.061224489795918366, 0.061224489795918366, 0.061224489795918366, 0.061224489795918366, 0.061224489795918366, 0.061224489795918366, 0.061224489795918366, 0.061224489795918366, 0.0641399416909621, 0.0641399416909621, 0.0641399416909621, 0.0641399416909621, 0.0641399416909621, 0.061224489795918366, 0.061224489795918366, 0.061224489795918366, 0.05830903790087463, 0.05830903790087463, 0.05830903790087463, 0.061224489795918366, 0.061224489795918366, 0.061224489795918366, 0.061224489795918366, 0.061224489795918366, 0.061224489795918366, 0.061224489795918366, 0.061224489795918366, 0.061224489795918366, 0.061224489795918366, 0.061224489795918366, 0.061224489795918366, 0.061224489795918366, 0.061224489795918366, 0.061224489795918366, 0.061224489795918366, 0.061224489795918366, 0.061224489795918366, 0.061224489795918366, 0.061224489795918366, 0.061224489795918366, 0.10495626822157435, 0.11370262390670553, 0.08454810495626822, 0.08163265306122448, 0.0641399416909621, 0.0641399416909621, 0.0641399416909621, 0.0641399416909621, 0.0641399416909621, 0.0641399416909621, 0.0641399416909621, 0.0641399416909621, 0.0641399416909621, 0.0641399416909621, 0.0641399416909621, 0.1282798833819242, 0.12536443148688048, 0.061224489795918366, 0.061224489795918366, 0.061224489795918366, 0.061224489795918366, 0.061224489795918366, 0.061224489795918366, 0.061224489795918366, 0.061224489795918366, 0.061224489795918366, 0.061224489795918366, 0.0641399416909621, 0.0641399416909621, 0.0641399416909621, 0.0641399416909621, 0.0641399416909621, 0.0641399416909621, 0.0641399416909621, 0.0641399416909621, 0.0641399416909621, 0.0641399416909621, 0.0641399416909621, 0.06705539358600583, 0.06705539358600583, 0.07580174927113703, 0.07871720116618076, 0.09329446064139942, 0.09329446064139942, 0.08454810495626822, 0.08454810495626822, 0.06997084548104957, 0.06705539358600583, 0.06705539358600583, 0.06705539358600583, 0.06705539358600583, 0.06705539358600583, 0.06705539358600583, 0.06705539358600583, 0.06705539358600583, 0.06705539358600583, 0.06705539358600583, 0.06997084548104957, 0.06997084548104957, 0.06997084548104957, 0.06997084548104957, 0.06997084548104957, 0.06997084548104957, 0.06997084548104957, 0.06997084548104957, 0.06997084548104957, 0.06997084548104957, 0.06997084548104957, 0.10787172011661808, 0.119533527696793, 0.119533527696793, 0.11661807580174927, 0.12536443148688048, 0.12244897959183673, 0.12244897959183673, 0.08746355685131195, 0.07580174927113703, 0.0728862973760933, 0.0728862973760933, 0.06997084548104957, 0.0641399416909621, 0.0641399416909621, 0.0641399416909621, 0.0641399416909621, 0.0641399416909621, 0.061224489795918366, 0.061224489795918366, 0.061224489795918366, 0.0641399416909621, 0.07871720116618076, 0.061224489795918366, 0.061224489795918366, 0.061224489795918366, 0.061224489795918366, 0.061224489795918366, 0.061224489795918366, 0.061224489795918366, 0.061224489795918366, 0.061224489795918366, 0.061224489795918366, 0.061224489795918366, 0.061224489795918366, 0.061224489795918366, 0.061224489795918366, 0.061224489795918366, 0.061224489795918366, 0.061224489795918366, 0.061224489795918366, 0.061224489795918366, 0.061224489795918366, 0.061224489795918366, 0.0641399416909621, 0.0641399416909621, 0.0728862973760933, 0.08163265306122448, 0.10204081632653061, 0.22448979591836735, 0.18075801749271136, 0.26822157434402333, 0.8338192419825073], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/FCD.gap.json b/pfam_gap_rates/FCD.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..7e8ad9f663f2f0c970aedd080d2c15f558c0c368
--- /dev/null
+++ b/pfam_gap_rates/FCD.gap.json
@@ -0,0 +1 @@
+{"family": "FCD", "n_seqs": 5000, "length": 138, "gap_rates": [0.4004, 0.1886, 0.1174, 0.0876, 0.0422, 0.0374, 0.0292, 0.025, 0.0222, 0.0214, 0.0192, 0.0184, 0.0174, 0.0166, 0.0196, 0.0198, 0.0182, 0.0182, 0.0216, 0.0196, 0.016, 0.0258, 0.0224, 0.947, 0.0274, 0.0202, 0.013, 0.0108, 0.0098, 0.0098, 0.0098, 0.0094, 0.0092, 0.0092, 0.014, 0.013, 0.0114, 0.009, 0.0096, 0.0132, 0.0514, 0.0492, 0.9212, 0.9434, 0.898, 0.1394, 0.1086, 0.076, 0.1326, 0.2068, 0.1666, 0.9392, 0.92, 0.0162, 0.0092, 0.0068, 0.0062, 0.0056, 0.0058, 0.0052, 0.0048, 0.005, 0.005, 0.0048, 0.005, 0.0052, 0.0052, 0.0048, 0.0048, 0.0052, 0.0046, 0.0044, 0.0044, 0.0044, 0.004, 0.011, 0.0046, 0.0046, 0.005, 0.0044, 0.0048, 0.0046, 0.0046, 0.005, 0.0052, 0.0054, 0.0088, 0.9196, 0.946, 0.8408, 0.0096, 0.0256, 0.0236, 0.0302, 0.0542, 0.1318, 0.1586, 0.8166, 0.8854, 0.9396, 0.8494, 0.7434, 0.0116, 0.0098, 0.0094, 0.0088, 0.0098, 0.0092, 0.009, 0.0092, 0.0094, 0.0106, 0.0106, 0.01, 0.0096, 0.0092, 0.0094, 0.0092, 0.0098, 0.01, 0.01, 0.0106, 0.0108, 0.011, 0.0122, 0.013, 0.0146, 0.0178, 0.0204, 0.0244, 0.0278, 0.0322, 0.042, 0.0526, 0.0788, 0.114, 0.1592, 0.3834], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/FCH.gap.json b/pfam_gap_rates/FCH.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..3d01fc10f43f3d8488fbbbc70db64a7fc58ddd62
--- /dev/null
+++ b/pfam_gap_rates/FCH.gap.json
@@ -0,0 +1 @@
+{"family": "FCH", "n_seqs": 1286, "length": 96, "gap_rates": [0.3911353032659409, 0.1780715396578538, 0.13452566096423016, 0.09175738724727839, 0.07931570762052877, 0.07153965785381027, 0.06531881804043546, 0.0583203732503888, 0.04510108864696734, 0.041990668740279936, 0.04121306376360809, 0.04121306376360809, 0.03732503888024884, 0.03110419906687403, 0.024883359253499222, 0.01866251944012442, 0.013996889580093312, 0.013219284603421462, 0.01088646967340591, 0.00933125972006221, 0.006998444790046656, 0.007776049766718507, 0.006998444790046656, 0.006998444790046656, 0.0038880248833592537, 0.004665629860031105, 0.0023328149300155523, 0.0007776049766718507, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0007776049766718507, 0.0015552099533437014, 0.003110419906687403, 0.0038880248833592537, 0.007776049766718507, 0.008553654743390357, 0.008553654743390357, 0.01010886469673406, 0.00933125972006221, 0.01088646967340591, 0.01088646967340591, 0.01088646967340591, 0.0645412130637636, 0.1104199066874028, 0.9362363919129082, 0.4821150855365474, 0.41135303265940903, 0.43001555209953346, 0.4097978227060653, 0.2869362363919129, 0.6632970451010887, 0.7262830482115086, 0.7923794712286159, 0.8242612752721618, 0.864696734059098, 0.8748055987558321, 0.8888024883359253, 0.9401244167962675, 0.9447900466562986, 0.9261275272161742, 0.8880248833592534, 0.8678071539657853, 0.8600311041990669, 0.8063763608087092, 0.7433903576982893, 0.6967340590979783, 0.6337480559875583, 0.05132192846034215, 0.041990668740279936, 0.03421461897356143, 0.03188180404354588, 0.030326594090202177, 0.03110419906687403, 0.03110419906687403, 0.03110419906687403, 0.03110419906687403, 0.03110419906687403, 0.03110419906687403, 0.03343701399688958, 0.03421461897356143, 0.03576982892690513, 0.03732503888024884, 0.038102643856920686, 0.03965785381026438, 0.041990668740279936, 0.04743390357698289, 0.05132192846034215, 0.05598755832037325, 0.07542768273716952, 0.14385692068429237, 0.24650077760497668, 0.8203732503888025], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/FERM_C.gap.json b/pfam_gap_rates/FERM_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..65f6108ca49ba3814b8dd2785909d4b76bc957b1
--- /dev/null
+++ b/pfam_gap_rates/FERM_C.gap.json
@@ -0,0 +1 @@
+{"family": "FERM_C", "n_seqs": 1230, "length": 105, "gap_rates": [0.4943089430894309, 0.35528455284552846, 0.191869918699187, 0.14634146341463414, 0.11544715447154472, 0.07235772357723577, 0.05934959349593496, 0.05121951219512195, 0.04796747967479675, 0.04715447154471545, 0.04715447154471545, 0.046341463414634146, 0.046341463414634146, 0.046341463414634146, 0.04552845528455285, 0.04552845528455285, 0.044715447154471545, 0.04390243902439024, 0.044715447154471545, 0.044715447154471545, 0.05121951219512195, 0.05365853658536585, 0.04959349593495935, 0.041463414634146344, 0.07398373983739838, 0.9317073170731708, 0.6422764227642277, 0.583739837398374, 0.551219512195122, 0.03739837398373984, 0.03333333333333333, 0.03008130081300813, 0.03008130081300813, 0.030894308943089432, 0.02926829268292683, 0.028455284552845527, 0.02926829268292683, 0.028455284552845527, 0.028455284552845527, 0.028455284552845527, 0.028455284552845527, 0.027642276422764227, 0.025203252032520326, 0.023577235772357725, 0.02195121951219512, 0.023577235772357725, 0.02195121951219512, 0.022764227642276424, 0.02195121951219512, 0.022764227642276424, 0.026016260162601626, 0.026829268292682926, 0.8146341463414634, 0.8910569105691057, 0.9105691056910569, 0.9138211382113821, 0.9471544715447154, 0.9495934959349593, 0.9154471544715447, 0.9121951219512195, 0.9016260162601626, 0.8788617886178862, 0.8113821138211382, 0.524390243902439, 0.5121951219512195, 0.43902439024390244, 0.29024390243902437, 0.18536585365853658, 0.0983739837398374, 0.05853658536585366, 0.04065040650406504, 0.043089430894308944, 0.12195121951219512, 0.03983739837398374, 0.03983739837398374, 0.04065040650406504, 0.04227642276422764, 0.04065040650406504, 0.04065040650406504, 0.07073170731707316, 0.04390243902439024, 0.041463414634146344, 0.041463414634146344, 0.041463414634146344, 0.04227642276422764, 0.04552845528455285, 0.046341463414634146, 0.04959349593495935, 0.05203252032520325, 0.04959349593495935, 0.04878048780487805, 0.04959349593495935, 0.05040650406504065, 0.05203252032520325, 0.052845528455284556, 0.05365853658536585, 0.06585365853658537, 0.07073170731707316, 0.07398373983739838, 0.0910569105691057, 0.13902439024390245, 0.2040650406504065, 0.33658536585365856, 0.46422764227642277, 0.6268292682926829], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/FF.gap.json b/pfam_gap_rates/FF.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..38273cbf768bc5490470dc208353764290cda635
--- /dev/null
+++ b/pfam_gap_rates/FF.gap.json
@@ -0,0 +1 @@
+{"family": "FF", "n_seqs": 1937, "length": 66, "gap_rates": [0.5049044914816727, 0.2973670624677336, 0.17707795560144554, 0.08415074858027878, 0.041817243159525036, 0.03149199793495096, 0.023748064016520392, 0.01858544140423335, 0.010325245224574084, 0.009292720702116675, 0.008260196179659268, 0.008776458440887971, 0.006711409395973154, 0.014455343314403717, 0.8337635518843572, 0.8373773877129582, 0.7774909654104285, 0.4703149199793495, 0.005162622612287042, 0.003097573567372225, 0.002065049044914817, 0.0015487867836861124, 0.0005162622612287042, 0.9277232834279814, 0.9277232834279814, 0.9287558079504388, 0.9292720702116676, 0.9297883324728963, 0.9292720702116676, 0.9287558079504388, 0.9277232834279814, 0.9272070211667527, 0.0005162622612287042, 0.0005162622612287042, 0.0010325245224574084, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0005162622612287042, 0.0010325245224574084, 0.002065049044914817, 0.006711409395973154, 0.007743933918430563, 0.7614868353123386, 0.9483737738771296, 0.6592669075890553, 0.17191533298915848, 0.010325245224574084, 0.0123902942694889, 0.014971605575632421, 0.014971605575632421, 0.015487867836861126, 0.018069179143004648, 0.02581311306143521, 0.029943211151264842, 0.03458957150232318, 0.04594734124935467, 0.07176045431078988, 0.21579762519359835], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/FIBP.gap.json b/pfam_gap_rates/FIBP.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f0f09514365ff51d68a560bdf87061b283490cda
--- /dev/null
+++ b/pfam_gap_rates/FIBP.gap.json
@@ -0,0 +1 @@
+{"family": "FIBP", "n_seqs": 107, "length": 372, "gap_rates": [0.9252336448598131, 0.6261682242990654, 0.5794392523364486, 0.514018691588785, 0.4672897196261682, 0.4392523364485981, 0.4392523364485981, 0.4392523364485981, 0.4392523364485981, 0.42990654205607476, 0.42990654205607476, 0.4205607476635514, 0.3925233644859813, 0.3925233644859813, 0.3925233644859813, 0.38317757009345793, 0.38317757009345793, 0.38317757009345793, 0.38317757009345793, 0.38317757009345793, 0.38317757009345793, 0.37383177570093457, 0.37383177570093457, 0.37383177570093457, 0.37383177570093457, 0.37383177570093457, 0.35514018691588783, 0.35514018691588783, 0.34579439252336447, 0.35514018691588783, 0.35514018691588783, 0.34579439252336447, 0.34579439252336447, 0.3364485981308411, 0.3364485981308411, 0.3364485981308411, 0.3364485981308411, 0.3364485981308411, 0.37383177570093457, 0.3925233644859813, 0.3925233644859813, 0.3364485981308411, 0.3364485981308411, 0.308411214953271, 0.29906542056074764, 0.29906542056074764, 0.2897196261682243, 0.2803738317757009, 0.2803738317757009, 0.2803738317757009, 0.2803738317757009, 0.2803738317757009, 0.2803738317757009, 0.27102803738317754, 0.2616822429906542, 0.2616822429906542, 0.24299065420560748, 0.24299065420560748, 0.24299065420560748, 0.24299065420560748, 0.2336448598130841, 0.2336448598130841, 0.2336448598130841, 0.2336448598130841, 0.2336448598130841, 0.2336448598130841, 0.2336448598130841, 0.2336448598130841, 0.2336448598130841, 0.2336448598130841, 0.2336448598130841, 0.24299065420560748, 0.2336448598130841, 0.2336448598130841, 0.9345794392523364, 0.2336448598130841, 0.2336448598130841, 0.2336448598130841, 0.2336448598130841, 0.2336448598130841, 0.2336448598130841, 0.2336448598130841, 0.2336448598130841, 0.2336448598130841, 0.22429906542056074, 0.22429906542056074, 0.22429906542056074, 0.22429906542056074, 0.22429906542056074, 0.22429906542056074, 0.22429906542056074, 0.22429906542056074, 0.22429906542056074, 0.21495327102803738, 0.21495327102803738, 0.2336448598130841, 0.2336448598130841, 0.2336448598130841, 0.24299065420560748, 0.24299065420560748, 0.24299065420560748, 0.24299065420560748, 0.24299065420560748, 0.24299065420560748, 0.24299065420560748, 0.24299065420560748, 0.24299065420560748, 0.24299065420560748, 0.24299065420560748, 0.24299065420560748, 0.24299065420560748, 0.24299065420560748, 0.24299065420560748, 0.2523364485981308, 0.2523364485981308, 0.2616822429906542, 0.2523364485981308, 0.2523364485981308, 0.2523364485981308, 0.2523364485981308, 0.2523364485981308, 0.2616822429906542, 0.2803738317757009, 0.27102803738317754, 0.27102803738317754, 0.27102803738317754, 0.2523364485981308, 0.2523364485981308, 0.2523364485981308, 0.2616822429906542, 0.2616822429906542, 0.27102803738317754, 0.27102803738317754, 0.27102803738317754, 0.2616822429906542, 0.2616822429906542, 0.2616822429906542, 0.2616822429906542, 0.27102803738317754, 0.27102803738317754, 0.27102803738317754, 0.27102803738317754, 0.27102803738317754, 0.27102803738317754, 0.29906542056074764, 0.29906542056074764, 0.308411214953271, 0.3364485981308411, 0.3364485981308411, 0.9439252336448598, 0.9439252336448598, 0.32710280373831774, 0.3364485981308411, 0.3364485981308411, 0.32710280373831774, 0.32710280373831774, 0.32710280373831774, 0.32710280373831774, 0.32710280373831774, 0.32710280373831774, 0.3177570093457944, 0.3177570093457944, 0.3177570093457944, 0.3177570093457944, 0.3177570093457944, 0.3177570093457944, 0.3177570093457944, 0.3177570093457944, 0.3177570093457944, 0.3177570093457944, 0.308411214953271, 0.3177570093457944, 0.32710280373831774, 0.32710280373831774, 0.32710280373831774, 0.32710280373831774, 0.32710280373831774, 0.32710280373831774, 0.32710280373831774, 0.32710280373831774, 0.32710280373831774, 0.32710280373831774, 0.32710280373831774, 0.32710280373831774, 0.32710280373831774, 0.3364485981308411, 0.34579439252336447, 0.3644859813084112, 0.3644859813084112, 0.35514018691588783, 0.35514018691588783, 0.3644859813084112, 0.3644859813084112, 0.3644859813084112, 0.3644859813084112, 0.3644859813084112, 0.3644859813084112, 0.3644859813084112, 0.3644859813084112, 0.3644859813084112, 0.3644859813084112, 0.35514018691588783, 0.3644859813084112, 0.35514018691588783, 0.35514018691588783, 0.35514018691588783, 0.35514018691588783, 0.35514018691588783, 0.35514018691588783, 0.35514018691588783, 0.35514018691588783, 0.35514018691588783, 0.37383177570093457, 0.38317757009345793, 0.40186915887850466, 0.5700934579439252, 0.9345794392523364, 0.9345794392523364, 0.9345794392523364, 0.9345794392523364, 0.9345794392523364, 0.9345794392523364, 0.9065420560747663, 0.5700934579439252, 0.4766355140186916, 0.45794392523364486, 0.4205607476635514, 0.42990654205607476, 0.7757009345794392, 0.45794392523364486, 0.4205607476635514, 0.3644859813084112, 0.35514018691588783, 0.34579439252336447, 0.34579439252336447, 0.34579439252336447, 0.34579439252336447, 0.34579439252336447, 0.34579439252336447, 0.34579439252336447, 0.35514018691588783, 0.3364485981308411, 0.3364485981308411, 0.3364485981308411, 0.3364485981308411, 0.3364485981308411, 0.3364485981308411, 0.3364485981308411, 0.897196261682243, 0.34579439252336447, 0.34579439252336447, 0.7102803738317757, 0.34579439252336447, 0.34579439252336447, 0.34579439252336447, 0.5514018691588785, 0.5327102803738317, 0.35514018691588783, 0.34579439252336447, 0.34579439252336447, 0.34579439252336447, 0.34579439252336447, 0.3644859813084112, 0.3644859813084112, 0.35514018691588783, 0.3644859813084112, 0.3644859813084112, 0.3644859813084112, 0.37383177570093457, 0.37383177570093457, 0.3644859813084112, 0.37383177570093457, 0.514018691588785, 0.514018691588785, 0.38317757009345793, 0.3925233644859813, 0.40186915887850466, 0.40186915887850466, 0.40186915887850466, 0.40186915887850466, 0.40186915887850466, 0.38317757009345793, 0.38317757009345793, 0.38317757009345793, 0.38317757009345793, 0.3925233644859813, 0.38317757009345793, 0.38317757009345793, 0.38317757009345793, 0.38317757009345793, 0.38317757009345793, 0.38317757009345793, 0.38317757009345793, 0.38317757009345793, 0.38317757009345793, 0.38317757009345793, 0.38317757009345793, 0.38317757009345793, 0.38317757009345793, 0.3925233644859813, 0.3925233644859813, 0.38317757009345793, 0.38317757009345793, 0.38317757009345793, 0.38317757009345793, 0.38317757009345793, 0.38317757009345793, 0.38317757009345793, 0.38317757009345793, 0.38317757009345793, 0.38317757009345793, 0.411214953271028, 0.37383177570093457, 0.37383177570093457, 0.38317757009345793, 0.3925233644859813, 0.3925233644859813, 0.3925233644859813, 0.3925233644859813, 0.3925233644859813, 0.3925233644859813, 0.3925233644859813, 0.3925233644859813, 0.3925233644859813, 0.3925233644859813, 0.3925233644859813, 0.3925233644859813, 0.3925233644859813, 0.3925233644859813, 0.3925233644859813, 0.3925233644859813, 0.3925233644859813, 0.3925233644859813, 0.3925233644859813, 0.3925233644859813, 0.40186915887850466, 0.411214953271028, 0.411214953271028, 0.4205607476635514, 0.42990654205607476, 0.4485981308411215, 0.4392523364485981, 0.4392523364485981, 0.4672897196261682, 0.4672897196261682, 0.4672897196261682, 0.4672897196261682, 0.4766355140186916, 0.7383177570093458, 0.6074766355140186, 0.5981308411214953, 0.6074766355140186, 0.4953271028037383, 0.4953271028037383, 0.5046728971962616, 0.5046728971962616, 0.5046728971962616, 0.5046728971962616, 0.5046728971962616, 0.5046728971962616, 0.5046728971962616, 0.5046728971962616, 0.5046728971962616, 0.5046728971962616, 0.514018691588785, 0.5233644859813084, 0.5233644859813084, 0.5233644859813084, 0.5420560747663551, 0.5420560747663551, 0.5514018691588785, 0.7009345794392523], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/FKBP_N.gap.json b/pfam_gap_rates/FKBP_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..320da6301c5e390c5c7355fbe12450dffc529440
--- /dev/null
+++ b/pfam_gap_rates/FKBP_N.gap.json
@@ -0,0 +1 @@
+{"family": "FKBP_N", "n_seqs": 776, "length": 127, "gap_rates": [0.8672680412371134, 0.7938144329896907, 0.7190721649484536, 0.6649484536082474, 0.625, 0.5682989690721649, 0.5128865979381443, 0.4677835051546392, 0.42010309278350516, 0.3801546391752577, 0.3402061855670103, 0.30541237113402064, 0.2912371134020619, 0.2757731958762887, 0.2036082474226804, 0.20103092783505155, 0.19458762886597938, 0.19201030927835053, 0.19201030927835053, 0.19072164948453607, 0.18427835051546393, 0.18298969072164947, 0.18298969072164947, 0.18298969072164947, 0.18170103092783504, 0.18170103092783504, 0.18170103092783504, 0.18298969072164947, 0.18170103092783504, 0.3079896907216495, 0.9304123711340206, 0.7770618556701031, 0.7371134020618557, 0.8144329896907216, 0.9342783505154639, 0.9394329896907216, 0.9265463917525774, 0.7925257731958762, 0.7152061855670103, 0.6610824742268041, 0.46262886597938147, 0.19458762886597938, 0.18685567010309279, 0.21262886597938144, 0.21520618556701032, 0.8247422680412371, 0.17010309278350516, 0.17010309278350516, 0.17010309278350516, 0.17010309278350516, 0.17010309278350516, 0.17010309278350516, 0.17010309278350516, 0.17010309278350516, 0.17010309278350516, 0.17010309278350516, 0.17010309278350516, 0.17010309278350516, 0.17010309278350516, 0.17010309278350516, 0.17010309278350516, 0.17010309278350516, 0.17010309278350516, 0.1713917525773196, 0.17525773195876287, 0.3543814432989691, 0.20231958762886598, 0.19845360824742267, 0.19072164948453607, 0.18685567010309279, 0.18427835051546393, 0.18170103092783504, 0.18041237113402062, 0.17654639175257733, 0.17654639175257733, 0.17654639175257733, 0.18041237113402062, 0.18041237113402062, 0.18041237113402062, 0.18041237113402062, 0.2036082474226804, 0.327319587628866, 0.32989690721649484, 0.327319587628866, 0.3324742268041237, 0.30283505154639173, 0.30283505154639173, 0.3324742268041237, 0.25773195876288657, 0.24097938144329897, 0.23067010309278352, 0.22036082474226804, 0.20876288659793815, 0.20231958762886598, 0.20231958762886598, 0.22036082474226804, 0.19974226804123713, 0.18170103092783504, 0.1404639175257732, 0.07603092783505154, 0.06829896907216494, 0.05670103092783505, 0.04639175257731959, 0.04639175257731959, 0.04381443298969072, 0.04381443298969072, 0.041237113402061855, 0.041237113402061855, 0.041237113402061855, 0.041237113402061855, 0.04252577319587629, 0.04639175257731959, 0.04768041237113402, 0.04639175257731959, 0.04639175257731959, 0.04639175257731959, 0.04639175257731959, 0.04896907216494845, 0.05025773195876289, 0.04896907216494845, 0.04896907216494845, 0.04896907216494845, 0.05412371134020619, 0.06314432989690721, 0.06829896907216494, 0.08118556701030928, 0.15206185567010308], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/FKS1_dom1.gap.json b/pfam_gap_rates/FKS1_dom1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..53af6b044009c6c7d9c81760a7e19a3963d6e462
--- /dev/null
+++ b/pfam_gap_rates/FKS1_dom1.gap.json
@@ -0,0 +1 @@
+{"family": "FKS1_dom1", "n_seqs": 587, "length": 135, "gap_rates": [0.2555366269165247, 0.11754684838160136, 0.0868824531516184, 0.05110732538330494, 0.05110732538330494, 0.05110732538330494, 0.05110732538330494, 0.05110732538330494, 0.05110732538330494, 0.05110732538330494, 0.05110732538330494, 0.05110732538330494, 0.05110732538330494, 0.05110732538330494, 0.049403747870528106, 0.049403747870528106, 0.04770017035775128, 0.04770017035775128, 0.04770017035775128, 0.04770017035775128, 0.044293015332197615, 0.044293015332197615, 0.044293015332197615, 0.044293015332197615, 0.04599659284497445, 0.04599659284497445, 0.04258943781942078, 0.04258943781942078, 0.04258943781942078, 0.044293015332197615, 0.044293015332197615, 0.04599659284497445, 0.04599659284497445, 0.3986371379897785, 0.40545144804088584, 0.41567291311754684, 0.41737649063032367, 0.9216354344122658, 0.9250425894378195, 0.9352640545144804, 0.9437819420783645, 0.9352640545144804, 0.9250425894378195, 0.8160136286201022, 0.14480408858603067, 0.22146507666098808, 0.9403747870528109, 0.1890971039182283, 0.17546848381601363, 0.1260647359454855, 0.11925042589437819, 0.10562180579216354, 0.06303236797274275, 0.4855195911413969, 0.5468483816013628, 0.5672913117546848, 0.6047700170357752, 0.848381601362862, 0.9403747870528109, 0.8977853492333902, 0.6422487223168655, 0.5792163543441227, 0.5587734241908007, 0.5383304940374787, 0.33049403747870526, 0.044293015332197615, 0.5315161839863713, 0.6115843270868825, 0.7461669505962522, 0.7768313458262351, 0.6780238500851788, 0.596252129471891, 0.5229982964224872, 0.028960817717206135, 0.028960817717206135, 0.028960817717206135, 0.028960817717206135, 0.028960817717206135, 0.028960817717206135, 0.030664395229982964, 0.030664395229982964, 0.03577512776831346, 0.03236797274275979, 0.030664395229982964, 0.030664395229982964, 0.03236797274275979, 0.03236797274275979, 0.03236797274275979, 0.03236797274275979, 0.03236797274275979, 0.555366269165247, 0.054514480408858604, 0.05110732538330494, 0.044293015332197615, 0.04258943781942078, 0.04599659284497445, 0.044293015332197615, 0.12776831345826234, 0.059625212947189095, 0.04258943781942078, 0.030664395229982964, 0.6439522998296422, 0.6524701873935264, 0.8739352640545145, 0.6490630323679727, 0.6149914821124361, 0.02555366269165247, 0.02555366269165247, 0.02555366269165247, 0.02555366269165247, 0.027257240204429302, 0.027257240204429302, 0.027257240204429302, 0.027257240204429302, 0.027257240204429302, 0.027257240204429302, 0.027257240204429302, 0.027257240204429302, 0.027257240204429302, 0.027257240204429302, 0.027257240204429302, 0.027257240204429302, 0.027257240204429302, 0.03577512776831346, 0.03577512776831346, 0.03747870528109029, 0.04599659284497445, 0.04599659284497445, 0.05110732538330494, 0.43270868824531517, 0.12947189097103917, 0.13969335604770017, 0.15332197614991483, 0.18568994889267462, 0.7529812606473595], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/FTCD_C.gap.json b/pfam_gap_rates/FTCD_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..205a32e501a09ea2c23eb4813f56f71d582aeeb4
--- /dev/null
+++ b/pfam_gap_rates/FTCD_C.gap.json
@@ -0,0 +1 @@
+{"family": "FTCD_C", "n_seqs": 569, "length": 185, "gap_rates": [0.5518453427065027, 0.19332161687170474, 0.11423550087873462, 0.07557117750439367, 0.06678383128295255, 0.06502636203866433, 0.0632688927943761, 0.061511423550087874, 0.05799648506151142, 0.056239015817223195, 0.056239015817223195, 0.056239015817223195, 0.05799648506151142, 0.054481546572934976, 0.05272407732864675, 0.05272407732864675, 0.050966608084358524, 0.050966608084358524, 0.0492091388400703, 0.0492091388400703, 0.0492091388400703, 0.04745166959578207, 0.04745166959578207, 0.04745166959578207, 0.04745166959578207, 0.04745166959578207, 0.04569420035149385, 0.040421792618629174, 0.03866432337434095, 0.03866432337434095, 0.03866432337434095, 0.03866432337434095, 0.03866432337434095, 0.03866432337434095, 0.033391915641476276, 0.033391915641476276, 0.033391915641476276, 0.033391915641476276, 0.033391915641476276, 0.033391915641476276, 0.040421792618629174, 0.043936731107205626, 0.08260105448154657, 0.061511423550087874, 0.056239015817223195, 0.0632688927943761, 0.06854130052724078, 0.06854130052724078, 0.10896309314586995, 0.09314586994727592, 0.07381370826010544, 0.9244288224956063, 0.929701230228471, 0.9261862917398945, 0.9244288224956063, 0.05799648506151142, 0.0492091388400703, 0.0421792618629174, 0.03866432337434095, 0.03690685413005272, 0.0351493848857645, 0.0351493848857645, 0.0351493848857645, 0.033391915641476276, 0.029876977152899824, 0.033391915641476276, 0.0351493848857645, 0.028119507908611598, 0.026362038664323375, 0.026362038664323375, 0.028119507908611598, 0.028119507908611598, 0.028119507908611598, 0.028119507908611598, 0.028119507908611598, 0.028119507908611598, 0.028119507908611598, 0.028119507908611598, 0.029876977152899824, 0.029876977152899824, 0.029876977152899824, 0.03163444639718805, 0.03163444639718805, 0.033391915641476276, 0.03163444639718805, 0.03163444639718805, 0.03163444639718805, 0.033391915641476276, 0.033391915641476276, 0.033391915641476276, 0.04745166959578207, 0.05975395430579965, 0.05272407732864675, 0.08963093145869948, 0.09490333919156414, 0.1335676625659051, 0.14586994727592267, 0.18629173989455183, 0.18629173989455183, 0.1704745166959578, 0.13884007029876977, 0.0773286467486819, 0.04745166959578207, 0.0492091388400703, 0.050966608084358524, 0.04569420035149385, 0.03866432337434095, 0.03866432337434095, 0.03866432337434095, 0.03866432337434095, 0.0351493848857645, 0.028119507908611598, 0.028119507908611598, 0.028119507908611598, 0.028119507908611598, 0.028119507908611598, 0.028119507908611598, 0.028119507908611598, 0.028119507908611598, 0.028119507908611598, 0.026362038664323375, 0.026362038664323375, 0.028119507908611598, 0.028119507908611598, 0.028119507908611598, 0.028119507908611598, 0.028119507908611598, 0.028119507908611598, 0.028119507908611598, 0.028119507908611598, 0.028119507908611598, 0.028119507908611598, 0.029876977152899824, 0.028119507908611598, 0.029876977152899824, 0.029876977152899824, 0.028119507908611598, 0.028119507908611598, 0.029876977152899824, 0.029876977152899824, 0.03163444639718805, 0.03163444639718805, 0.028119507908611598, 0.028119507908611598, 0.028119507908611598, 0.028119507908611598, 0.028119507908611598, 0.026362038664323375, 0.026362038664323375, 0.026362038664323375, 0.02460456942003515, 0.026362038664323375, 0.028119507908611598, 0.028119507908611598, 0.028119507908611598, 0.028119507908611598, 0.028119507908611598, 0.028119507908611598, 0.028119507908611598, 0.028119507908611598, 0.029876977152899824, 0.029876977152899824, 0.03163444639718805, 0.033391915641476276, 0.033391915641476276, 0.033391915641476276, 0.0351493848857645, 0.03690685413005272, 0.040421792618629174, 0.0492091388400703, 0.054481546572934976, 0.05975395430579965, 0.070298769771529, 0.07557117750439367, 0.08084358523725835, 0.08611599297012303, 0.08963093145869948, 0.09666080843585237, 0.1054481546572935, 0.11599297012302284, 0.1335676625659051, 0.1546572934973638, 0.20738137082601055, 0.28471001757469244, 0.507908611599297], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/F_actin_cap_B.gap.json b/pfam_gap_rates/F_actin_cap_B.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..10d1ce965f6de88929ef8513a556bb51729d9d81
--- /dev/null
+++ b/pfam_gap_rates/F_actin_cap_B.gap.json
@@ -0,0 +1 @@
+{"family": "F_actin_cap_B", "n_seqs": 342, "length": 287, "gap_rates": [0.4415204678362573, 0.2543859649122807, 0.22514619883040934, 0.20760233918128654, 0.19883040935672514, 0.195906432748538, 0.195906432748538, 0.17543859649122806, 0.17251461988304093, 0.1695906432748538, 0.1695906432748538, 0.1695906432748538, 0.1695906432748538, 0.1695906432748538, 0.16666666666666666, 0.16666666666666666, 0.16666666666666666, 0.16666666666666666, 0.16666666666666666, 0.16666666666666666, 0.16374269005847952, 0.16374269005847952, 0.16374269005847952, 0.16374269005847952, 0.1608187134502924, 0.1608187134502924, 0.14912280701754385, 0.14912280701754385, 0.14619883040935672, 0.14619883040935672, 0.14327485380116958, 0.14035087719298245, 0.14327485380116958, 0.14035087719298245, 0.13742690058479531, 0.13450292397660818, 0.13450292397660818, 0.13742690058479531, 0.13742690058479531, 0.14035087719298245, 0.13742690058479531, 0.13742690058479531, 0.13742690058479531, 0.13450292397660818, 0.13450292397660818, 0.13157894736842105, 0.12573099415204678, 0.12573099415204678, 0.1286549707602339, 0.15789473684210525, 0.12573099415204678, 0.12280701754385964, 0.12280701754385964, 0.12280701754385964, 0.12280701754385964, 0.12280701754385964, 0.12573099415204678, 0.12573099415204678, 0.12573099415204678, 0.12573099415204678, 0.12573099415204678, 0.12573099415204678, 0.12573099415204678, 0.12280701754385964, 0.12280701754385964, 0.12280701754385964, 0.11988304093567251, 0.12573099415204678, 0.13450292397660818, 0.13742690058479531, 0.13742690058479531, 0.13742690058479531, 0.14035087719298245, 0.14035087719298245, 0.14035087719298245, 0.14912280701754385, 0.15789473684210525, 0.15497076023391812, 0.14327485380116958, 0.804093567251462, 0.868421052631579, 0.8947368421052632, 0.9122807017543859, 0.9152046783625731, 0.9181286549707602, 0.9210526315789473, 0.9210526315789473, 0.9210526315789473, 0.9181286549707602, 0.9152046783625731, 0.9152046783625731, 0.9035087719298246, 0.8742690058479532, 0.8391812865497076, 0.7923976608187134, 0.14035087719298245, 0.9444444444444444, 0.9415204678362573, 0.14327485380116958, 0.14327485380116958, 0.13742690058479531, 0.14035087719298245, 0.13450292397660818, 0.13450292397660818, 0.13450292397660818, 0.12573099415204678, 0.12573099415204678, 0.12573099415204678, 0.11988304093567251, 0.11988304093567251, 0.11988304093567251, 0.11988304093567251, 0.11988304093567251, 0.11695906432748537, 0.11988304093567251, 0.11988304093567251, 0.11988304093567251, 0.11988304093567251, 0.11695906432748537, 0.1111111111111111, 0.11403508771929824, 0.11403508771929824, 0.11988304093567251, 0.11403508771929824, 0.11403508771929824, 0.1111111111111111, 0.10818713450292397, 0.9415204678362573, 0.10818713450292397, 0.10818713450292397, 0.10818713450292397, 0.10818713450292397, 0.10818713450292397, 0.10818713450292397, 0.09941520467836257, 0.09941520467836257, 0.09941520467836257, 0.09941520467836257, 0.09941520467836257, 0.10526315789473684, 0.6549707602339181, 0.9152046783625731, 0.9239766081871345, 0.9385964912280702, 0.9444444444444444, 0.935672514619883, 0.9210526315789473, 0.8947368421052632, 0.09941520467836257, 0.1023391812865497, 0.1023391812865497, 0.10526315789473684, 0.10526315789473684, 0.10818713450292397, 0.10818713450292397, 0.10818713450292397, 0.10818713450292397, 0.10818713450292397, 0.11695906432748537, 0.11988304093567251, 0.14327485380116958, 0.19883040935672514, 0.20760233918128654, 0.21929824561403508, 0.8625730994152047, 0.9035087719298246, 0.9064327485380117, 0.8918128654970761, 0.7719298245614035, 0.6929824561403509, 0.2309941520467836, 0.13742690058479531, 0.13157894736842105, 0.12573099415204678, 0.12573099415204678, 0.11695906432748537, 0.11695906432748537, 0.11695906432748537, 0.11695906432748537, 0.11695906432748537, 0.11695906432748537, 0.11695906432748537, 0.11695906432748537, 0.11695906432748537, 0.11695906432748537, 0.11695906432748537, 0.11695906432748537, 0.6432748538011696, 0.5672514619883041, 0.5701754385964912, 0.3216374269005848, 0.2543859649122807, 0.11403508771929824, 0.1111111111111111, 0.10818713450292397, 0.10818713450292397, 0.10818713450292397, 0.10818713450292397, 0.10818713450292397, 0.10818713450292397, 0.10818713450292397, 0.10818713450292397, 0.10526315789473684, 0.10818713450292397, 0.10818713450292397, 0.10818713450292397, 0.10818713450292397, 0.10818713450292397, 0.10818713450292397, 0.1111111111111111, 0.9093567251461988, 0.9298245614035088, 0.935672514619883, 0.9385964912280702, 0.9385964912280702, 0.9473684210526315, 0.9473684210526315, 0.9385964912280702, 0.935672514619883, 0.935672514619883, 0.9152046783625731, 0.8947368421052632, 0.19005847953216373, 0.17543859649122806, 0.15497076023391812, 0.13450292397660818, 0.12280701754385964, 0.1111111111111111, 0.10818713450292397, 0.10526315789473684, 0.10526315789473684, 0.10526315789473684, 0.10818713450292397, 0.10818713450292397, 0.10526315789473684, 0.10526315789473684, 0.10526315789473684, 0.10526315789473684, 0.1111111111111111, 0.1111111111111111, 0.11403508771929824, 0.1111111111111111, 0.11695906432748537, 0.11403508771929824, 0.2046783625730994, 0.20175438596491227, 0.11695906432748537, 0.8654970760233918, 0.8918128654970761, 0.9181286549707602, 0.9005847953216374, 0.8742690058479532, 0.8187134502923976, 0.11988304093567251, 0.11988304093567251, 0.11988304093567251, 0.11988304093567251, 0.11988304093567251, 0.11988304093567251, 0.11988304093567251, 0.11988304093567251, 0.11988304093567251, 0.11695906432748537, 0.11695906432748537, 0.11988304093567251, 0.12573099415204678, 0.1286549707602339, 0.1286549707602339, 0.1286549707602339, 0.1286549707602339, 0.13157894736842105, 0.13157894736842105, 0.13157894736842105, 0.13450292397660818, 0.13742690058479531, 0.13742690058479531, 0.14035087719298245, 0.14619883040935672, 0.15789473684210525, 0.1608187134502924, 0.1608187134502924, 0.1695906432748538, 0.17251461988304093, 0.17251461988304093, 0.19005847953216373, 0.20175438596491227, 0.24561403508771928], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/FbpA.gap.json b/pfam_gap_rates/FbpA.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..fe17c7eb3d88be6a8cda625f5cd12353fb82e45e
--- /dev/null
+++ b/pfam_gap_rates/FbpA.gap.json
@@ -0,0 +1 @@
+{"family": "FbpA", "n_seqs": 1328, "length": 578, "gap_rates": [0.5240963855421686, 0.35768072289156627, 0.3064759036144578, 0.2786144578313253, 0.2680722891566265, 0.26430722891566266, 0.2560240963855422, 0.24322289156626506, 0.2371987951807229, 0.23644578313253012, 0.23042168674698796, 0.2289156626506024, 0.22740963855421686, 0.23268072289156627, 0.3960843373493976, 0.22515060240963855, 0.22063253012048192, 0.21762048192771086, 0.21686746987951808, 0.21460843373493976, 0.21159638554216867, 0.21159638554216867, 0.21084337349397592, 0.21009036144578314, 0.20933734939759036, 0.22816265060240964, 0.21009036144578314, 0.21009036144578314, 0.20933734939759036, 0.20783132530120482, 0.20707831325301204, 0.20707831325301204, 0.2055722891566265, 0.2033132530120482, 0.20256024096385541, 0.20180722891566266, 0.19954819277108435, 0.920933734939759, 0.2477409638554217, 0.25376506024096385, 0.23870481927710843, 0.22439759036144577, 0.1980421686746988, 0.21234939759036145, 0.19578313253012047, 0.9344879518072289, 0.18900602409638553, 0.18900602409638553, 0.18900602409638553, 0.20105421686746988, 0.1897590361445783, 0.4563253012048193, 0.42771084337349397, 0.4134036144578313, 0.19201807228915663, 0.1844879518072289, 0.18674698795180722, 0.1844879518072289, 0.18373493975903615, 0.18298192771084337, 0.18373493975903615, 0.18298192771084337, 0.18298192771084337, 0.9292168674698795, 0.18147590361445784, 0.1822289156626506, 0.2560240963855422, 0.21460843373493976, 0.19352409638554216, 0.17921686746987953, 0.17620481927710843, 0.1746987951807229, 0.17394578313253012, 0.17243975903614459, 0.17319277108433734, 0.1746987951807229, 0.17545180722891565, 0.17243975903614459, 0.17243975903614459, 0.17319277108433734, 0.16792168674698796, 0.16792168674698796, 0.16340361445783133, 0.16265060240963855, 0.1694277108433735, 0.16415662650602408, 0.16189759036144577, 0.16189759036144577, 0.16189759036144577, 0.16340361445783133, 0.16566265060240964, 0.16415662650602408, 0.16415662650602408, 0.947289156626506, 0.16340361445783133, 0.16415662650602408, 0.16490963855421686, 0.16340361445783133, 0.16340361445783133, 0.16340361445783133, 0.16340361445783133, 0.16340361445783133, 0.16265060240963855, 0.16340361445783133, 0.16340361445783133, 0.16265060240963855, 0.16265060240963855, 0.16265060240963855, 0.5391566265060241, 0.5180722891566265, 0.46762048192771083, 0.45707831325301207, 0.4427710843373494, 0.26430722891566266, 0.2582831325301205, 0.2003012048192771, 0.1844879518072289, 0.16566265060240964, 0.16340361445783133, 0.16340361445783133, 0.16340361445783133, 0.16340361445783133, 0.16340361445783133, 0.16340361445783133, 0.16415662650602408, 0.16415662650602408, 0.43448795180722893, 0.16490963855421686, 0.16490963855421686, 0.16490963855421686, 0.16490963855421686, 0.16490963855421686, 0.16490963855421686, 0.19578313253012047, 0.1875, 0.1664156626506024, 0.1694277108433735, 0.7582831325301205, 0.16716867469879518, 0.16566265060240964, 0.16566265060240964, 0.16566265060240964, 0.1664156626506024, 0.1664156626506024, 0.1686746987951807, 0.17093373493975902, 0.17771084337349397, 0.18900602409638553, 0.19126506024096385, 0.20256024096385541, 0.37801204819277107, 0.3509036144578313, 0.3381024096385542, 0.32379518072289154, 0.26656626506024095, 0.2477409638554217, 0.24322289156626506, 0.23569277108433734, 0.22966867469879518, 0.22966867469879518, 0.2311746987951807, 0.2311746987951807, 0.2311746987951807, 0.25978915662650603, 0.25903614457831325, 0.25903614457831325, 0.2545180722891566, 0.25150602409638556, 0.38629518072289154, 0.3064759036144578, 0.2740963855421687, 0.2680722891566265, 0.2703313253012048, 0.2710843373493976, 0.26731927710843373, 0.9382530120481928, 0.9073795180722891, 0.27183734939759036, 0.27936746987951805, 0.28313253012048195, 0.2876506024096386, 0.7093373493975904, 0.31551204819277107, 0.9299698795180723, 0.32379518072289154, 0.3079819277108434, 0.3049698795180723, 0.2989457831325301, 0.3064759036144578, 0.3960843373493976, 0.3998493975903614, 0.3697289156626506, 0.8094879518072289, 0.9262048192771084, 0.9427710843373494, 0.947289156626506, 0.9367469879518072, 0.9088855421686747, 0.6995481927710844, 0.3463855421686747, 0.35240963855421686, 0.3004518072289157, 0.29292168674698793, 0.29066265060240964, 0.28463855421686746, 0.28539156626506024, 0.2816265060240964, 0.28539156626506024, 0.28313253012048195, 0.28463855421686746, 0.2876506024096386, 0.29593373493975905, 0.4134036144578313, 0.29292168674698793, 0.29066265060240964, 0.2876506024096386, 0.2868975903614458, 0.2876506024096386, 0.2891566265060241, 0.2884036144578313, 0.2891566265060241, 0.2884036144578313, 0.2891566265060241, 0.2876506024096386, 0.29066265060240964, 0.2914156626506024, 0.29066265060240964, 0.2921686746987952, 0.4608433734939759, 0.4578313253012048, 0.4503012048192771, 0.4503012048192771, 0.5414156626506024, 0.5451807228915663, 0.5293674698795181, 0.5052710843373494, 0.49623493975903615, 0.48569277108433734, 0.47213855421686746, 0.45481927710843373, 0.4314759036144578, 0.3998493975903614, 0.38629518072289154, 0.31551204819277107, 0.30346385542168675, 0.2891566265060241, 0.2838855421686747, 0.2786144578313253, 0.2756024096385542, 0.2748493975903614, 0.27710843373493976, 0.27259036144578314, 0.27259036144578314, 0.27183734939759036, 0.2748493975903614, 0.27710843373493976, 0.276355421686747, 0.27936746987951805, 0.8644578313253012, 0.8674698795180723, 0.8674698795180723, 0.8689759036144579, 0.8719879518072289, 0.8742469879518072, 0.8780120481927711, 0.8832831325301205, 0.8938253012048193, 0.9088855421686747, 0.9194277108433735, 0.9262048192771084, 0.9397590361445783, 0.9495481927710844, 0.9457831325301205, 0.9337349397590361, 0.9239457831325302, 0.9149096385542169, 0.9021084337349398, 0.8870481927710844, 0.8787650602409639, 0.875, 0.8742469879518072, 0.8704819277108434, 0.8674698795180723, 0.8674698795180723, 0.8644578313253012, 0.8637048192771084, 0.42620481927710846, 0.4307228915662651, 0.37650602409638556, 0.3411144578313253, 0.31551204819277107, 0.3019578313253012, 0.29292168674698793, 0.2989457831325301, 0.40286144578313254, 0.39683734939759036, 0.37198795180722893, 0.3817771084337349, 0.4495481927710843, 0.8945783132530121, 0.9382530120481928, 0.7793674698795181, 0.35240963855421686, 0.28539156626506024, 0.27183734939759036, 0.26731927710843373, 0.26430722891566266, 0.26656626506024095, 0.26656626506024095, 0.2680722891566265, 0.2635542168674699, 0.8885542168674698, 0.9375, 0.8591867469879518, 0.26430722891566266, 0.2756024096385542, 0.276355421686747, 0.3704819277108434, 0.3802710843373494, 0.8930722891566265, 0.4194277108433735, 0.3546686746987952, 0.3253012048192771, 0.29743975903614456, 0.24548192771084337, 0.24397590361445784, 0.24021084337349397, 0.2394578313253012, 0.23795180722891565, 0.2341867469879518, 0.23268072289156627, 0.23343373493975902, 0.23042168674698796, 0.23042168674698796, 0.23343373493975902, 0.23569277108433734, 0.23870481927710843, 0.2371987951807229, 0.23569277108433734, 0.2311746987951807, 0.9487951807228916, 0.2447289156626506, 0.23343373493975902, 0.22816265060240964, 0.22213855421686746, 0.22213855421686746, 0.21536144578313254, 0.21310240963855423, 0.21234939759036145, 0.21009036144578314, 0.21686746987951808, 0.2085843373493976, 0.2055722891566265, 0.20256024096385541, 0.19879518072289157, 0.19954819277108435, 0.19879518072289157, 0.20180722891566266, 0.9397590361445783, 0.9457831325301205, 0.9322289156626506, 0.1980421686746988, 0.19578313253012047, 0.19352409638554216, 0.19503012048192772, 0.1927710843373494, 0.1927710843373494, 0.1927710843373494, 0.1927710843373494, 0.1927710843373494, 0.1927710843373494, 0.19503012048192772, 0.19352409638554216, 0.19352409638554216, 0.19201807228915663, 0.1927710843373494, 0.1927710843373494, 0.19352409638554216, 0.19503012048192772, 0.19578313253012047, 0.19578313253012047, 0.2003012048192771, 0.2003012048192771, 0.2063253012048193, 0.20933734939759036, 0.19728915662650603, 0.8034638554216867, 0.8230421686746988, 0.8569277108433735, 0.8132530120481928, 0.7921686746987951, 0.19503012048192772, 0.19653614457831325, 0.19728915662650603, 0.19578313253012047, 0.19578313253012047, 0.19578313253012047, 0.19653614457831325, 0.19653614457831325, 0.19653614457831325, 0.19503012048192772, 0.19352409638554216, 0.19503012048192772, 0.19427710843373494, 0.19578313253012047, 0.2063253012048193, 0.19879518072289157, 0.19578313253012047, 0.2213855421686747, 0.20105421686746988, 0.19954819277108435, 0.2003012048192771, 0.2003012048192771, 0.1980421686746988, 0.19728915662650603, 0.19653614457831325, 0.1980421686746988, 0.19728915662650603, 0.21385542168674698, 0.21234939759036145, 0.21310240963855423, 0.21310240963855423, 0.4510542168674699, 0.6626506024096386, 0.25, 0.21084337349397592, 0.7891566265060241, 0.7899096385542169, 0.7921686746987951, 0.7951807228915663, 0.795933734939759, 0.7966867469879518, 0.8004518072289156, 0.802710843373494, 0.8064759036144579, 0.8094879518072289, 0.8162650602409639, 0.8245481927710844, 0.8411144578313253, 0.8418674698795181, 0.8448795180722891, 0.848644578313253, 0.8576807228915663, 0.8606927710843374, 0.8712349397590361, 0.8998493975903614, 0.9043674698795181, 0.9073795180722891, 0.9149096385542169, 0.9156626506024096, 0.9164156626506024, 0.920933734939759, 0.9262048192771084, 0.9322289156626506, 0.9337349397590361, 0.9367469879518072, 0.9480421686746988, 0.9435240963855421, 0.9337349397590361, 0.9322289156626506, 0.9307228915662651, 0.9239457831325302, 0.9194277108433735, 0.9164156626506024, 0.9149096385542169, 0.9103915662650602, 0.9073795180722891, 0.9021084337349398, 0.8923192771084337, 0.8629518072289156, 0.8606927710843374, 0.8561746987951807, 0.8456325301204819, 0.8433734939759037, 0.8411144578313253, 0.8373493975903614, 0.8192771084337349, 0.8117469879518072, 0.8079819277108434, 0.8034638554216867, 0.8012048192771084, 0.7966867469879518, 0.7966867469879518, 0.7951807228915663, 0.7936746987951807, 0.7906626506024096, 0.7891566265060241, 0.7891566265060241, 0.20180722891566266, 0.19879518072289157, 0.19653614457831325, 0.19728915662650603, 0.19653614457831325, 0.19653614457831325, 0.19653614457831325, 0.19653614457831325, 0.19578313253012047, 0.19578313253012047, 0.19578313253012047, 0.19578313253012047, 0.19578313253012047, 0.19578313253012047, 0.19653614457831325, 0.19653614457831325, 0.19653614457831325, 0.19653614457831325, 0.19728915662650603, 0.1980421686746988, 0.19728915662650603, 0.19728915662650603, 0.19879518072289157, 0.20406626506024098, 0.20256024096385541, 0.20180722891566266, 0.20105421686746988, 0.19954819277108435, 0.19954819277108435, 0.19728915662650603, 0.19954819277108435, 0.20105421686746988, 0.20406626506024098, 0.21159638554216867, 0.21009036144578314, 0.21009036144578314, 0.21009036144578314, 0.21234939759036145, 0.21460843373493976, 0.2191265060240964, 0.22590361445783133, 0.2319277108433735, 0.23493975903614459, 0.24171686746987953, 0.2582831325301205, 0.27936746987951805, 0.29292168674698793, 0.29668674698795183, 0.29743975903614456, 0.3004518072289157, 0.30271084337349397, 0.3117469879518072, 0.3192771084337349, 0.32756024096385544, 0.3373493975903614, 0.9480421686746988, 0.9457831325301205, 0.3817771084337349, 0.3885542168674699, 0.572289156626506, 0.3832831325301205, 0.38403614457831325, 0.3825301204819277, 0.3870481927710843, 0.39231927710843373, 0.3990963855421687, 0.41039156626506024, 0.4299698795180723, 0.43900602409638556, 0.45180722891566266, 0.4578313253012048, 0.4661144578313253, 0.48268072289156627, 0.48418674698795183, 0.48493975903614456, 0.49021084337349397, 0.49021084337349397, 0.4894578313253012, 0.4894578313253012, 0.4939759036144578, 0.5030120481927711, 0.5060240963855421, 0.5158132530120482, 0.5225903614457831, 0.5391566265060241, 0.552710843373494, 0.5775602409638554, 0.6204819277108434, 0.7033132530120482, 0.8373493975903614], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/FdhD-NarQ.gap.json b/pfam_gap_rates/FdhD-NarQ.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..35765b6bf4375daab1bc704cc9d876c7d0dc80bd
--- /dev/null
+++ b/pfam_gap_rates/FdhD-NarQ.gap.json
@@ -0,0 +1 @@
+{"family": "FdhD-NarQ", "n_seqs": 947, "length": 262, "gap_rates": [0.5047518479408659, 0.10242872228088701, 0.0665258711721225, 0.0665258711721225, 0.06441393875395987, 0.06441393875395987, 0.06441393875395987, 0.06441393875395987, 0.06546990496304118, 0.06230200633579725, 0.06230200633579725, 0.06019007391763464, 0.9292502639915523, 0.9355860612460402, 0.9440337909186906, 0.9355860612460402, 0.9271383315733897, 0.06019007391763464, 0.05807814149947202, 0.05807814149947202, 0.05807814149947202, 0.059134107708553325, 0.057022175290390706, 0.05385427666314678, 0.05385427666314678, 0.05385427666314678, 0.05385427666314678, 0.05385427666314678, 0.05385427666314678, 0.05385427666314678, 0.05385427666314678, 0.05385427666314678, 0.05385427666314678, 0.054910242872228086, 0.05385427666314678, 0.05385427666314678, 0.05385427666314678, 0.05385427666314678, 0.05279831045406547, 0.05279831045406547, 0.05279831045406547, 0.05279831045406547, 0.054910242872228086, 0.0559662090813094, 0.057022175290390706, 0.08130939809926083, 0.06335797254487856, 0.061246040126715945, 0.05807814149947202, 0.0559662090813094, 0.054910242872228086, 0.054910242872228086, 0.054910242872228086, 0.054910242872228086, 0.054910242872228086, 0.054910242872228086, 0.054910242872228086, 0.08025343189017951, 0.08870116156282999, 0.12988384371700107, 0.06863780359028511, 0.5850052798310454, 0.6378035902851109, 0.7740232312565998, 0.8141499472016895, 0.8817317845828934, 0.8585005279831045, 0.7972544878563886, 0.7497360084477297, 0.6219640971488912, 0.5828933474128828, 0.06019007391763464, 0.06441393875395987, 0.06441393875395987, 0.06019007391763464, 0.0791974656810982, 0.08236536430834214, 0.08025343189017951, 0.9208025343189018, 0.6187961985216474, 0.11298838437170011, 0.10665258711721225, 0.11826821541710665, 0.2576557550158395, 0.20274551214361142, 0.9324181626187962, 0.883843717001056, 0.6124604012671595, 0.1562829989440338, 0.10770855332629356, 0.08764519535374868, 0.0791974656810982, 0.10242872228088701, 0.4931362196409715, 0.4656810982048574, 0.07602956705385427, 0.07497360084477296, 0.07497360084477296, 0.07497360084477296, 0.07286166842661035, 0.07391763463569166, 0.08130939809926083, 0.07708553326293559, 0.3864836325237592, 0.0897571277719113, 0.08447729672650475, 0.07708553326293559, 0.08342133051742344, 0.9218585005279831, 0.08447729672650475, 0.18479408658922913, 0.10665258711721225, 0.10137275607180571, 0.8014783526927138, 0.6958817317845829, 0.09186906019007392, 0.10559662090813093, 0.08764519535374868, 0.08130939809926083, 0.0791974656810982, 0.08025343189017951, 0.07497360084477296, 0.8342133051742344, 0.723336853220697, 0.14889123548046462, 0.16578669482576558, 0.06969376979936642, 0.050686378035902854, 0.04751847940865892, 0.044350580781414996, 0.044350580781414996, 0.0454065469904963, 0.0454065469904963, 0.044350580781414996, 0.044350580781414996, 0.0454065469904963, 0.0454065469904963, 0.0454065469904963, 0.046462513199577615, 0.046462513199577615, 0.046462513199577615, 0.0454065469904963, 0.0454065469904963, 0.05174234424498416, 0.07497360084477296, 0.0559662090813094, 0.048574445617740235, 0.050686378035902854, 0.048574445617740235, 0.046462513199577615, 0.04329461457233368, 0.04118268215417107, 0.04118268215417107, 0.04118268215417107, 0.042238648363252376, 0.042238648363252376, 0.042238648363252376, 0.04329461457233368, 0.04329461457233368, 0.044350580781414996, 0.044350580781414996, 0.04329461457233368, 0.9450897571277719, 0.4044350580781415, 0.06335797254487856, 0.04329461457233368, 0.04963041182682154, 0.0454065469904963, 0.04118268215417107, 0.04118268215417107, 0.04012671594508976, 0.04012671594508976, 0.04012671594508976, 0.04012671594508976, 0.04012671594508976, 0.04118268215417107, 0.04012671594508976, 0.04012671594508976, 0.04012671594508976, 0.04012671594508976, 0.04012671594508976, 0.04012671594508976, 0.03907074973600845, 0.03907074973600845, 0.03801478352692714, 0.03801478352692714, 0.03801478352692714, 0.03695881731784583, 0.03801478352692714, 0.03801478352692714, 0.057022175290390706, 0.05385427666314678, 0.048574445617740235, 0.05174234424498416, 0.7993664202745512, 0.06969376979936642, 0.05174234424498416, 0.03801478352692714, 0.03801478352692714, 0.03695881731784583, 0.03695881731784583, 0.03695881731784583, 0.03695881731784583, 0.03801478352692714, 0.03801478352692714, 0.03801478352692714, 0.03801478352692714, 0.03801478352692714, 0.03801478352692714, 0.03801478352692714, 0.03801478352692714, 0.03907074973600845, 0.03907074973600845, 0.03907074973600845, 0.03907074973600845, 0.03801478352692714, 0.03695881731784583, 0.03801478352692714, 0.03801478352692714, 0.03801478352692714, 0.03801478352692714, 0.03801478352692714, 0.03907074973600845, 0.04012671594508976, 0.04012671594508976, 0.04012671594508976, 0.04012671594508976, 0.04012671594508976, 0.04012671594508976, 0.04012671594508976, 0.04012671594508976, 0.03907074973600845, 0.03907074973600845, 0.04012671594508976, 0.04012671594508976, 0.04012671594508976, 0.04012671594508976, 0.04012671594508976, 0.04012671594508976, 0.04012671594508976, 0.04012671594508976, 0.04012671594508976, 0.04118268215417107, 0.042238648363252376, 0.04118268215417107, 0.04329461457233368, 0.04329461457233368, 0.046462513199577615, 0.04963041182682154, 0.04751847940865892, 0.054910242872228086, 0.054910242872228086, 0.06546990496304118, 0.07180570221752904, 0.07602956705385427, 0.08025343189017951, 0.0897571277719113, 0.11404435058078141, 0.15205913410770855, 0.1921858500527983, 0.2133051742344245, 0.23442449841605068], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Fe_dep_repress.gap.json b/pfam_gap_rates/Fe_dep_repress.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..458bba50f7122107c669c9998c0d4c872aab0a06
--- /dev/null
+++ b/pfam_gap_rates/Fe_dep_repress.gap.json
@@ -0,0 +1 @@
+{"family": "Fe_dep_repress", "n_seqs": 1619, "length": 61, "gap_rates": [0.7683755404570722, 0.5287214329833231, 0.2933909820877085, 0.16306361951822113, 0.11673872760963558, 0.062384187770228534, 0.05188387893761581, 0.034589252625077206, 0.03150092649783817, 0.02964793082149475, 0.028412600370599134, 0.027177269919703522, 0.02285361334156887, 0.022235948116121063, 0.021000617665225447, 0.016676961087090797, 0.01605929586164299, 0.03767757875231625, 0.8060531192093885, 0.016676961087090797, 0.01173563928350834, 0.010500308832612723, 0.0067943174799258805, 0.004941321803582459, 0.004941321803582459, 0.0030883261272390363, 0.0030883261272390363, 0.0012353304508956147, 0.0012353304508956147, 0.0012353304508956147, 0.0012353304508956147, 0.0012353304508956147, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0006176652254478073, 0.0006176652254478073, 0.0006176652254478073, 0.0006176652254478073, 0.0012353304508956147, 0.0012353304508956147, 0.0018529956763434219, 0.0024706609017912293, 0.0030883261272390363, 0.004941321803582459, 0.014823965410747375, 0.01852995676343422, 0.022235948116121063, 0.043854231006794316, 0.08832612723903645, 0.13835701050030882, 0.17603458925262508, 0.22359481161210623, 0.2730080296479308, 0.5027794935145151, 0.6417541692402717], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Fe_hyd_lg_C.gap.json b/pfam_gap_rates/Fe_hyd_lg_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d90f0b8ae55c0907e737e4f992c3b77776e7eb89
--- /dev/null
+++ b/pfam_gap_rates/Fe_hyd_lg_C.gap.json
@@ -0,0 +1 @@
+{"family": "Fe_hyd_lg_C", "n_seqs": 1786, "length": 354, "gap_rates": [0.6472564389697648, 0.33986562150055993, 0.20492721164613661, 0.14893617021276595, 0.13997760358342665, 0.13381858902575589, 0.12933930571108623, 0.12541993281075028, 0.12262038073908174, 0.12150055991041434, 0.12150055991041434, 0.12150055991041434, 0.12094064949608063, 0.11982082866741321, 0.11814109742441209, 0.1366181410974244, 0.28499440089585665, 0.4563269876819709, 0.4552071668533035, 0.45296752519596867, 0.4501679731243001, 0.44568868980963045, 0.4400895856662934, 0.6103023516237402, 0.1444568868980963, 0.10750279955207166, 0.08846584546472565, 0.07838745800671892, 0.0755879059350504, 0.07110862262038074, 0.06494960806270997, 0.06438969764837627, 0.06438969764837627, 0.06438969764837627, 0.06326987681970885, 0.06270996640537514, 0.06159014557670773, 0.938969764837626, 0.05879059350503919, 0.05655095184770437, 0.05767077267637178, 0.05655095184770437, 0.06326987681970885, 0.05263157894736842, 0.05263157894736842, 0.05263157894736842, 0.05263157894736842, 0.051511758118701005, 0.052071668533034715, 0.052071668533034715, 0.052071668533034715, 0.052071668533034715, 0.05375139977603583, 0.05263157894736842, 0.052071668533034715, 0.1606942889137738, 0.1366181410974244, 0.13717805151175813, 0.14165733482642778, 0.06215005599104143, 0.055991041433370664, 0.051511758118701005, 0.05039193729003359, 0.05039193729003359, 0.054871220604703244, 0.07166853303471445, 0.8947368421052632, 0.9059350503919373, 0.9294512877939529, 0.944568868980963, 0.9356103023516238, 0.9221724524076148, 0.8980963045912654, 0.8857782754759238, 0.1343784994400896, 0.18085106382978725, 0.8370660694288914, 0.925531914893617, 0.9468085106382979, 0.8992161254199328, 0.7693169092945129, 0.18309070548712206, 0.23684210526315788, 0.08734602463605823, 0.09742441209406495, 0.07110862262038074, 0.04143337066069429, 0.040873460246360585, 0.040873460246360585, 0.040873460246360585, 0.04143337066069429, 0.04143337066069429, 0.04143337066069429, 0.041993281075028, 0.04311310190369541, 0.044232922732362824, 0.0425531914893617, 0.0425531914893617, 0.0425531914893617, 0.041993281075028, 0.0425531914893617, 0.043673012318029114, 0.04311310190369541, 0.04479283314669653, 0.04535274356103024, 0.8952967525195968, 0.04535274356103024, 0.04311310190369541, 0.044232922732362824, 0.044232922732362824, 0.0425531914893617, 0.0425531914893617, 0.041993281075028, 0.041993281075028, 0.043673012318029114, 0.043673012318029114, 0.043673012318029114, 0.04311310190369541, 0.04311310190369541, 0.043673012318029114, 0.0425531914893617, 0.04143337066069429, 0.04311310190369541, 0.0425531914893617, 0.0425531914893617, 0.043673012318029114, 0.043673012318029114, 0.0425531914893617, 0.23292273236282196, 0.054871220604703244, 0.04759238521836506, 0.09126539753639418, 0.4221724524076148, 0.4316909294512878, 0.4423292273236282, 0.42833146696528557, 0.41153415453527437, 0.39585666293393057, 0.3801791713325868, 0.08230683090705487, 0.04143337066069429, 0.040873460246360585, 0.040873460246360585, 0.03975363941769317, 0.03919372900335946, 0.03863381858902576, 0.03863381858902576, 0.03863381858902576, 0.03863381858902576, 0.03919372900335946, 0.040313549832026875, 0.040873460246360585, 0.04143337066069429, 0.04143337066069429, 0.040873460246360585, 0.041993281075028, 0.0509518477043673, 0.051511758118701005, 0.051511758118701005, 0.09126539753639418, 0.17469204927211646, 0.18197088465845465, 0.9322508398656215, 0.9070548712206047, 0.4596864501679731, 0.4154535274356103, 0.7502799552071668, 0.8863381858902576, 0.896976483762598, 0.9076147816349384, 0.9400895856662934, 0.9036954087346024, 0.8913773796192609, 0.8124300111982082, 0.49608062709966405, 0.37793952967525196, 0.06942889137737962, 0.0425531914893617, 0.04143337066069429, 0.03975363941769317, 0.03863381858902576, 0.03863381858902576, 0.03807390817469205, 0.03863381858902576, 0.03919372900335946, 0.03919372900335946, 0.03919372900335946, 0.040313549832026875, 0.040873460246360585, 0.03975363941769317, 0.040313549832026875, 0.040313549832026875, 0.05319148936170213, 0.05767077267637178, 0.0593505039193729, 0.05655095184770437, 0.0509518477043673, 0.051511758118701005, 0.055431131019036954, 0.05039193729003359, 0.05039193729003359, 0.04927211646136618, 0.0509518477043673, 0.05319148936170213, 0.052071668533034715, 0.1590145576707727, 0.1522956326987682, 0.14613661814109744, 0.14613661814109744, 0.1539753639417693, 0.13101903695408734, 0.11310190369540873, 0.08006718924972005, 0.06886898096304592, 0.07278835386338185, 0.07726763717805152, 0.0856662933930571, 0.09238521836506158, 0.05263157894736842, 0.1713325867861142, 0.21388577827547592, 0.2637178051511758, 0.2799552071668533, 0.3723404255319149, 0.406494960806271, 0.43673012318029114, 0.4406494960806271, 0.4412094064949608, 0.4428891377379619, 0.44456886898096304, 0.44512877939529677, 0.4473684210526316, 0.4490481522956327, 0.4540873460246361, 0.46192609182530797, 0.4708846584546473, 0.7301231802911534, 0.826427771556551, 0.8706606942889138, 0.8908174692049272, 0.9031354983202687, 0.910414333706607, 0.9283314669652856, 0.9395296752519597, 0.9473684210526315, 0.9451287793952967, 0.9344904815229563, 0.9137737961926092, 0.9070548712206047, 0.8964165733482643, 0.8868980963045913, 0.8594624860022396, 0.7569988801791714, 0.480963045912654, 0.4658454647256439, 0.4596864501679731, 0.4501679731243001, 0.448488241881299, 0.44680851063829785, 0.44512877939529677, 0.44344904815229563, 0.4417693169092945, 0.4412094064949608, 0.43729003359462487, 0.43673012318029114, 0.37793952967525196, 0.36674132138857785, 0.2687569988801792, 0.24636058230683092, 0.18924972004479285, 0.14613661814109744, 0.04703247480403135, 0.0856662933930571, 0.07950727883538634, 0.08006718924972005, 0.07446808510638298, 0.09182530795072788, 0.0856662933930571, 0.8947368421052632, 0.10582306830907055, 0.13773796192609183, 0.1595744680851064, 0.8633818589025756, 0.14165733482642778, 0.11982082866741321, 0.093505039193729, 0.944568868980963, 0.08902575587905935, 0.0683090705487122, 0.7961926091825308, 0.04535274356103024, 0.04143337066069429, 0.040313549832026875, 0.040313549832026875, 0.040873460246360585, 0.040873460246360585, 0.040873460246360585, 0.04143337066069429, 0.040873460246360585, 0.041993281075028, 0.040873460246360585, 0.040873460246360585, 0.04143337066069429, 0.041993281075028, 0.04535274356103024, 0.044232922732362824, 0.051511758118701005, 0.04983202687569989, 0.9036954087346024, 0.9059350503919373, 0.9171332586786114, 0.9210526315789473, 0.9227323628219485, 0.9232922732362822, 0.9277715565509519, 0.9305711086226204, 0.9322508398656215, 0.93505039193729, 0.9367301231802911, 0.93505039193729, 0.9339305711086227, 0.931131019036954, 0.9283314669652856, 0.9238521836506159, 0.9227323628219485, 0.9227323628219485, 0.9171332586786114, 0.9115341545352743, 0.9042553191489362, 0.9025755879059351, 0.05431131019036954, 0.054871220604703244, 0.0509518477043673, 0.052071668533034715, 0.06494960806270997, 0.04591265397536394, 0.9148936170212766, 0.043673012318029114, 0.04479283314669653, 0.041993281075028, 0.0425531914893617, 0.0425531914893617, 0.04311310190369541, 0.043673012318029114, 0.044232922732362824, 0.04479283314669653, 0.04535274356103024, 0.054871220604703244, 0.04479283314669653, 0.04703247480403135, 0.04759238521836506, 0.04927211646136618, 0.04983202687569989, 0.1427771556550952], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Fer2_4.gap.json b/pfam_gap_rates/Fer2_4.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..9156063bb73077d8caa92e305e9ce7ab49ff8431
--- /dev/null
+++ b/pfam_gap_rates/Fer2_4.gap.json
@@ -0,0 +1 @@
+{"family": "Fer2_4", "n_seqs": 3096, "length": 89, "gap_rates": [0.6111111111111112, 0.32978036175710596, 0.20930232558139536, 0.09011627906976744, 0.04425064599483204, 0.028423772609819122, 0.01744186046511628, 0.01582687338501292, 0.01582687338501292, 0.01582687338501292, 0.014857881136950904, 0.014534883720930232, 0.014534883720930232, 0.011950904392764857, 0.010981912144702842, 0.0103359173126615, 0.010012919896640826, 0.009366925064599484, 0.008397932816537468, 0.008397932816537468, 0.0071059431524547806, 0.006459948320413436, 0.006782945736434108, 0.006782945736434108, 0.006459948320413436, 0.006459948320413436, 0.0071059431524547806, 0.005813953488372093, 0.005490956072351421, 0.005813953488372093, 0.005813953488372093, 0.007751937984496124, 0.8530361757105943, 0.007428940568475452, 0.00872093023255814, 0.009366925064599484, 0.009689922480620155, 0.009689922480620155, 0.7693798449612403, 0.7729328165374677, 0.7577519379844961, 0.7267441860465116, 0.01776485788113695, 0.012919896640826873, 0.011304909560723515, 0.00904392764857881, 0.01744186046511628, 0.014534883720930232, 0.006782945736434108, 0.005490956072351421, 0.005490956072351421, 0.005490956072351421, 0.00516795865633075, 0.006136950904392765, 0.007428940568475452, 0.005490956072351421, 0.004521963824289405, 0.0048449612403100775, 0.005490956072351421, 0.8094315245478036, 0.8559431524547804, 0.9473514211886305, 0.9089147286821705, 0.8291343669250646, 0.7855297157622739, 0.006782945736434108, 0.005813953488372093, 0.006136950904392765, 0.08074935400516796, 0.712532299741602, 0.006136950904392765, 0.6463178294573644, 0.006136950904392765, 0.006136950904392765, 0.006136950904392765, 0.006459948320413436, 0.006782945736434108, 0.006782945736434108, 0.0071059431524547806, 0.009366925064599484, 0.011304909560723515, 0.0458656330749354, 0.05006459948320414, 0.05264857881136951, 0.05781653746770026, 0.07299741602067183, 0.10594315245478036, 0.16214470284237725, 0.2868217054263566], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Fer4_21.gap.json b/pfam_gap_rates/Fer4_21.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a262cdc0049f04f5667acf9af6f0a6662101a38b
--- /dev/null
+++ b/pfam_gap_rates/Fer4_21.gap.json
@@ -0,0 +1 @@
+{"family": "Fer4_21", "n_seqs": 1551, "length": 66, "gap_rates": [0.5138620245003224, 0.30303030303030304, 0.17794970986460348, 0.08704061895551257, 0.05415860735009671, 0.010315925209542231, 0.004513217279174726, 0.0025789813023855577, 0.0025789813023855577, 0.0025789813023855577, 0.0025789813023855577, 0.0025789813023855577, 0.0025789813023855577, 0.0025789813023855577, 0.0025789813023855577, 0.0019342359767891683, 0.0025789813023855577, 0.0019342359767891683, 0.0019342359767891683, 0.4339136041263701, 0.5957446808510638, 0.5925209542230819, 0.15538362346872986, 0.013539651837524178, 0.006447453255963894, 0.0070921985815602835, 0.8446163765312702, 0.9078014184397163, 0.9464861379754996, 0.877498388136686, 0.8388136686009027, 0.0019342359767891683, 0.04384268214055448, 0.04642166344294004, 0.058027079303675046, 0.03352675693101225, 0.03481624758220503, 0.02192134107027724, 0.05544809800128949, 0.9368149580915538, 0.01096067053513862, 0.003223726627981947, 0.0006447453255963894, 0.915538362346873, 0.0012894906511927789, 0.0019342359767891683, 0.0012894906511927789, 0.0012894906511927789, 0.0012894906511927789, 0.0012894906511927789, 0.0012894906511927789, 0.0012894906511927789, 0.0012894906511927789, 0.0012894906511927789, 0.0012894906511927789, 0.003223726627981947, 0.003223726627981947, 0.003223726627981947, 0.004513217279174726, 0.18375241779497098, 0.6299161831076725, 0.09477756286266925, 0.13668600902643455, 0.16892327530625403, 0.29980657640232106, 0.5377176015473888], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Fig1.gap.json b/pfam_gap_rates/Fig1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..df572fbce5f8923797d8e2b0de3207f20e0d72b9
--- /dev/null
+++ b/pfam_gap_rates/Fig1.gap.json
@@ -0,0 +1 @@
+{"family": "Fig1", "n_seqs": 116, "length": 224, "gap_rates": [0.853448275862069, 0.75, 0.5517241379310345, 0.4224137931034483, 0.3706896551724138, 0.29310344827586204, 0.25862068965517243, 0.46551724137931033, 0.1810344827586207, 0.1206896551724138, 0.11206896551724138, 0.11206896551724138, 0.45689655172413796, 0.05172413793103448, 0.05172413793103448, 0.05172413793103448, 0.05172413793103448, 0.05172413793103448, 0.05172413793103448, 0.05172413793103448, 0.04310344827586207, 0.04310344827586207, 0.04310344827586207, 0.04310344827586207, 0.04310344827586207, 0.04310344827586207, 0.04310344827586207, 0.04310344827586207, 0.1896551724137931, 0.05172413793103448, 0.853448275862069, 0.8706896551724138, 0.896551724137931, 0.9310344827586207, 0.9396551724137931, 0.9482758620689655, 0.9396551724137931, 0.9137931034482759, 0.8879310344827587, 0.8620689655172413, 0.8189655172413793, 0.04310344827586207, 0.04310344827586207, 0.04310344827586207, 0.04310344827586207, 0.853448275862069, 0.9396551724137931, 0.8448275862068966, 0.7413793103448276, 0.7413793103448276, 0.09482758620689655, 0.06896551724137931, 0.05172413793103448, 0.05172413793103448, 0.05172413793103448, 0.05172413793103448, 0.05172413793103448, 0.05172413793103448, 0.05172413793103448, 0.05172413793103448, 0.05172413793103448, 0.05172413793103448, 0.7758620689655172, 0.8362068965517241, 0.8793103448275862, 0.9137931034482759, 0.9482758620689655, 0.9482758620689655, 0.9396551724137931, 0.896551724137931, 0.853448275862069, 0.8189655172413793, 0.7758620689655172, 0.7586206896551724, 0.7327586206896551, 0.6982758620689655, 0.6896551724137931, 0.6637931034482759, 0.6379310344827587, 0.09482758620689655, 0.07758620689655173, 0.07758620689655173, 0.05172413793103448, 0.9482758620689655, 0.05172413793103448, 0.04310344827586207, 0.04310344827586207, 0.04310344827586207, 0.04310344827586207, 0.04310344827586207, 0.04310344827586207, 0.04310344827586207, 0.04310344827586207, 0.04310344827586207, 0.04310344827586207, 0.04310344827586207, 0.11206896551724138, 0.05172413793103448, 0.08620689655172414, 0.04310344827586207, 0.04310344827586207, 0.11206896551724138, 0.04310344827586207, 0.034482758620689655, 0.034482758620689655, 0.034482758620689655, 0.02586206896551724, 0.02586206896551724, 0.02586206896551724, 0.02586206896551724, 0.02586206896551724, 0.02586206896551724, 0.02586206896551724, 0.02586206896551724, 0.02586206896551724, 0.02586206896551724, 0.02586206896551724, 0.02586206896551724, 0.02586206896551724, 0.07758620689655173, 0.07758620689655173, 0.1810344827586207, 0.20689655172413793, 0.23275862068965517, 0.31896551724137934, 0.35344827586206895, 0.3706896551724138, 0.4051724137931034, 0.8362068965517241, 0.3706896551724138, 0.35344827586206895, 0.33620689655172414, 0.3017241379310345, 0.22413793103448276, 0.23275862068965517, 0.19827586206896552, 0.10344827586206896, 0.06896551724137931, 0.04310344827586207, 0.04310344827586207, 0.04310344827586207, 0.04310344827586207, 0.04310344827586207, 0.04310344827586207, 0.04310344827586207, 0.25, 0.9224137931034483, 0.05172413793103448, 0.02586206896551724, 0.02586206896551724, 0.02586206896551724, 0.017241379310344827, 0.017241379310344827, 0.017241379310344827, 0.017241379310344827, 0.02586206896551724, 0.017241379310344827, 0.017241379310344827, 0.017241379310344827, 0.02586206896551724, 0.02586206896551724, 0.02586206896551724, 0.02586206896551724, 0.02586206896551724, 0.02586206896551724, 0.02586206896551724, 0.017241379310344827, 0.017241379310344827, 0.017241379310344827, 0.017241379310344827, 0.017241379310344827, 0.017241379310344827, 0.017241379310344827, 0.017241379310344827, 0.017241379310344827, 0.034482758620689655, 0.017241379310344827, 0.02586206896551724, 0.02586206896551724, 0.02586206896551724, 0.02586206896551724, 0.02586206896551724, 0.02586206896551724, 0.02586206896551724, 0.02586206896551724, 0.02586206896551724, 0.02586206896551724, 0.034482758620689655, 0.9396551724137931, 0.9482758620689655, 0.9396551724137931, 0.034482758620689655, 0.02586206896551724, 0.034482758620689655, 0.02586206896551724, 0.02586206896551724, 0.02586206896551724, 0.02586206896551724, 0.02586206896551724, 0.02586206896551724, 0.02586206896551724, 0.02586206896551724, 0.02586206896551724, 0.02586206896551724, 0.02586206896551724, 0.02586206896551724, 0.02586206896551724, 0.02586206896551724, 0.034482758620689655, 0.034482758620689655, 0.034482758620689655, 0.034482758620689655, 0.04310344827586207, 0.05172413793103448, 0.0603448275862069, 0.0603448275862069, 0.06896551724137931, 0.09482758620689655, 0.10344827586206896, 0.11206896551724138, 0.12931034482758622, 0.19827586206896552, 0.2672413793103448, 0.39655172413793105], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/FixQ.gap.json b/pfam_gap_rates/FixQ.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..9532dd98c1ca87e0305180f69553dd7f8f6831e4
--- /dev/null
+++ b/pfam_gap_rates/FixQ.gap.json
@@ -0,0 +1 @@
+{"family": "FixQ", "n_seqs": 372, "length": 51, "gap_rates": [0.6908602150537635, 0.5403225806451613, 0.49193548387096775, 0.4731182795698925, 0.4381720430107527, 0.4220430107526882, 0.4032258064516129, 0.3790322580645161, 0.33064516129032256, 0.3010752688172043, 0.34946236559139787, 0.29838709677419356, 0.22043010752688172, 0.16129032258064516, 0.021505376344086023, 0.013440860215053764, 0.010752688172043012, 0.008064516129032258, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.002688172043010753, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.9274193548387096, 0.9112903225806451, 0.0456989247311828, 0.0, 0.0, 0.002688172043010753, 0.005376344086021506, 0.002688172043010753, 0.002688172043010753, 0.002688172043010753, 0.002688172043010753, 0.005376344086021506, 0.008064516129032258, 0.010752688172043012, 0.0456989247311828, 0.07526881720430108, 0.17204301075268819], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/FlaG.gap.json b/pfam_gap_rates/FlaG.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f77fd5daac9e5115e9243bc534ad7da82f758e61
--- /dev/null
+++ b/pfam_gap_rates/FlaG.gap.json
@@ -0,0 +1 @@
+{"family": "FlaG", "n_seqs": 506, "length": 107, "gap_rates": [0.9090909090909091, 0.857707509881423, 0.7806324110671937, 0.7015810276679841, 0.6600790513833992, 0.6047430830039525, 0.5454545454545454, 0.5079051383399209, 0.4683794466403162, 0.42292490118577075, 0.3893280632411067, 0.3577075098814229, 0.33992094861660077, 0.308300395256917, 0.2885375494071146, 0.2628458498023715, 0.24308300395256918, 0.22332015810276679, 0.2075098814229249, 0.18379446640316205, 0.17193675889328064, 0.1541501976284585, 0.1383399209486166, 0.12055335968379446, 0.1007905138339921, 0.08498023715415019, 0.07509881422924901, 0.07312252964426877, 0.07509881422924901, 0.06521739130434782, 0.05731225296442688, 0.932806324110672, 0.05731225296442688, 0.0533596837944664, 0.0533596837944664, 0.04743083003952569, 0.041501976284584984, 0.039525691699604744, 0.039525691699604744, 0.037549407114624504, 0.039525691699604744, 0.03359683794466403, 0.03557312252964427, 0.037549407114624504, 0.029644268774703556, 0.08893280632411067, 0.11264822134387352, 0.037549407114624504, 0.015810276679841896, 0.011857707509881422, 0.011857707509881422, 0.011857707509881422, 0.007905138339920948, 0.007905138339920948, 0.003952569169960474, 0.003952569169960474, 0.003952569169960474, 0.01383399209486166, 0.007905138339920948, 0.003952569169960474, 0.003952569169960474, 0.003952569169960474, 0.001976284584980237, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.003952569169960474, 0.019762845849802372, 0.005928853754940711, 0.0, 0.0, 0.001976284584980237, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.003952569169960474, 0.003952569169960474, 0.005928853754940711, 0.007905138339920948, 0.017786561264822136, 0.021739130434782608, 0.025691699604743084, 0.029644268774703556, 0.03162055335968379, 0.041501976284584984, 0.06521739130434782, 0.924901185770751, 0.9268774703557312, 0.9446640316205533, 0.9466403162055336, 0.9308300395256917, 0.9268774703557312, 0.9209486166007905, 0.09881422924901186, 0.11264822134387352, 0.11857707509881422, 0.12845849802371542, 0.14624505928853754, 0.19960474308300397, 0.4782608695652174], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Flagellar_put.gap.json b/pfam_gap_rates/Flagellar_put.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d5026e34607113d38c4dd9ac9a2fa269ad06cb19
--- /dev/null
+++ b/pfam_gap_rates/Flagellar_put.gap.json
@@ -0,0 +1 @@
+{"family": "Flagellar_put", "n_seqs": 223, "length": 24, "gap_rates": [0.16591928251121077, 0.004484304932735426, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.04932735426008968, 0.04484304932735426, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.004484304932735426, 0.02242152466367713, 0.026905829596412557], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Flagellin_IN.gap.json b/pfam_gap_rates/Flagellin_IN.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f20d04183807cdab7e145c5edd17fd25ce5ac95a
--- /dev/null
+++ b/pfam_gap_rates/Flagellin_IN.gap.json
@@ -0,0 +1 @@
+{"family": "Flagellin_IN", "n_seqs": 627, "length": 67, "gap_rates": [0.6124401913875598, 0.39712918660287083, 0.32216905901116427, 0.291866028708134, 0.2711323763955343, 0.24401913875598086, 0.22009569377990432, 0.1850079744816587, 0.22966507177033493, 0.20733652312599682, 0.20414673046251994, 0.21212121212121213, 0.7942583732057417, 0.8851674641148325, 0.9138755980861244, 0.8197767145135566, 0.7161084529505582, 0.518341307814992, 0.4481658692185008, 0.044657097288676235, 0.03827751196172249, 0.03189792663476874, 0.02073365231259968, 0.014354066985645933, 0.007974481658692184, 0.8229665071770335, 0.001594896331738437, 0.001594896331738437, 0.001594896331738437, 0.001594896331738437, 0.001594896331738437, 0.001594896331738437, 0.001594896331738437, 0.001594896331738437, 0.0, 0.0, 0.0, 0.4226475279106858, 0.3748006379585327, 0.017543859649122806, 0.001594896331738437, 0.004784688995215311, 0.001594896331738437, 0.001594896331738437, 0.001594896331738437, 0.001594896331738437, 0.001594896331738437, 0.001594896331738437, 0.017543859649122806, 0.9473684210526315, 0.02711323763955343, 0.03508771929824561, 0.12599681020733652, 0.3939393939393939, 0.6156299840510366, 0.9234449760765551, 0.8580542264752791, 0.5645933014354066, 0.06698564593301436, 0.07974481658692185, 0.08771929824561403, 0.11004784688995216, 0.11483253588516747, 0.1594896331738437, 0.21690590111642744, 0.3652312599681021, 0.7065390749601276], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Flavin_Reduct.gap.json b/pfam_gap_rates/Flavin_Reduct.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..6c01b62e6a9bf3ce06ca6be68a13717ee8a736dd
--- /dev/null
+++ b/pfam_gap_rates/Flavin_Reduct.gap.json
@@ -0,0 +1 @@
+{"family": "Flavin_Reduct", "n_seqs": 3957, "length": 197, "gap_rates": [0.8324488248673237, 0.6454384634824362, 0.5913570887035633, 0.3318170331058883, 0.19535001263583524, 0.14960828910791002, 0.12357846853677028, 0.10892089967146829, 0.08466009603234774, 0.06974981046247157, 0.06141015921152388, 0.05711397523376295, 0.05534495830174375, 0.4887541066464493, 0.06924437705332323, 0.06368460955269144, 0.9479403588577205, 0.04902704068738944, 0.05130149102855699, 0.05054334091483447, 0.049785190801111955, 0.045741723527925195, 0.038918372504422545, 0.034622188526661615, 0.03361132170836492, 0.032600454890068235, 0.03209502148091989, 0.0310841546626232, 0.03083143795804903, 0.033105888299216575, 0.03133687136719737, 0.029315137730603992, 0.03209502148091989, 0.028556987616881475, 0.02880970432145565, 0.09451604751074046, 0.9155926206722265, 0.06444275966641395, 0.03664392216325499, 0.015163002274450341, 0.014404852160727824, 0.01288855193328279, 0.011877685114986101, 0.012130401819560273, 0.011372251705837756, 0.8683345969168562, 0.8882992165782159, 0.92974475612838, 0.8713671973717463, 0.8658074298711145, 0.020722769775082132, 0.01617386909274703, 0.010866818296689411, 0.009097801364670205, 0.009097801364670205, 0.008845084660096033, 0.008845084660096033, 0.008845084660096033, 0.008845084660096033, 0.00859236795552186, 0.008086934546373515, 0.01617386909274703, 0.008845084660096033, 0.008086934546373515, 0.008086934546373515, 0.008086934546373515, 0.007834217841799343, 0.007834217841799343, 0.007834217841799343, 0.007834217841799343, 0.008086934546373515, 0.008339651250947688, 0.018953752843062926, 0.01061410159211524, 0.009350518069244376, 0.009350518069244376, 0.9259540055597675, 0.00859236795552186, 0.00859236795552186, 0.007834217841799343, 0.0075815011372251705, 0.0075815011372251705, 0.0075815011372251705, 0.0075815011372251705, 0.19661359615870608, 0.22415971695729087, 0.22744503411675512, 0.8253727571392468, 0.09628506444275967, 0.07000252716704575, 0.04902704068738944, 0.03133687136719737, 0.03992923932271923, 0.42936568107151885, 0.40965377811473336, 0.034874905231235785, 0.02982057113975234, 0.9454131918119788, 0.018953752843062926, 0.017437452615617893, 0.015668435683598686, 0.015415718979024514, 0.015415718979024514, 0.01592115238817286, 0.03866565579984837, 0.9365681071518828, 0.5135203436947182, 0.12307303512762194, 0.038918372504422545, 0.021733636593378822, 0.016426585797321203, 0.013393985342431134, 0.011119535001263583, 0.010361384887541066, 0.9469294920394238, 0.01061410159211524, 0.010361384887541066, 0.010361384887541066, 0.011119535001263583, 0.011372251705837756, 0.010361384887541066, 0.01061410159211524, 0.01061410159211524, 0.010866818296689411, 0.010866818296689411, 0.011119535001263583, 0.011624968410411928, 0.012383118524134444, 0.03007328784432651, 0.9373262572656053, 0.9484457922668689, 0.9239322719231742, 0.01693201920646955, 0.03436947182208744, 0.04169825625473844, 0.9337882234015669, 0.05155420773313116, 0.033105888299216575, 0.7849380844073793, 0.804902704068739, 0.85342431134698, 0.9085165529441496, 0.9241849886277483, 0.9282284559009351, 0.9327773565832701, 0.9360626737427344, 0.9449077584028305, 0.9342936568107152, 0.9320192064695476, 0.9254485721506192, 0.9226686884003032, 0.8731362143037655, 0.8380085923679556, 0.7988375031589589, 0.7748294162244125, 0.02350265352539803, 0.02350265352539803, 0.02021733636593379, 0.02122820318423048, 0.021733636593378822, 0.022239070002527166, 0.023755370229972202, 0.02552438716199141, 0.026535253980288095, 0.029567854435178165, 0.034874905231235785, 0.06115744250694971, 0.08162749557745767, 0.09729593126105636, 0.11220621683093253, 0.15061915592620673, 0.9158453373768006, 0.5400555976750063, 0.511751326762699, 0.6780389183725044, 0.5342431134698004, 0.9130654536264847, 0.9211523881728583, 0.9289866060146575, 0.935557240333586, 0.9396007076067728, 0.9320192064695476, 0.9241849886277483, 0.9160980540813748, 0.910538286580743, 0.4642405863027546, 0.46499873641647715, 0.4672731867576447, 0.47586555471316655, 0.4981046247156937, 0.5261561789234268, 0.5572403335860501, 0.5885772049532474, 0.6044983573414203, 0.6499873641647713, 0.7113975233762951, 0.7826636340662118], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/FliMN_C.gap.json b/pfam_gap_rates/FliMN_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e5c178c865759060a84f4712bfd54b589f85be36
--- /dev/null
+++ b/pfam_gap_rates/FliMN_C.gap.json
@@ -0,0 +1 @@
+{"family": "FliMN_C", "n_seqs": 2052, "length": 72, "gap_rates": [0.9244639376218323, 0.3654970760233918, 0.08869395711500974, 0.05116959064327485, 0.025828460038986353, 0.014132553606237816, 0.00682261208576998, 0.003898635477582846, 0.0024366471734892786, 0.001949317738791423, 0.0014619883040935672, 0.0009746588693957114, 0.0009746588693957114, 0.0009746588693957114, 0.0009746588693957114, 0.0009746588693957114, 0.0009746588693957114, 0.0009746588693957114, 0.0004873294346978557, 0.0004873294346978557, 0.0004873294346978557, 0.0004873294346978557, 0.0004873294346978557, 0.0004873294346978557, 0.0004873294346978557, 0.0004873294346978557, 0.0004873294346978557, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.019005847953216373, 0.018031189083820662, 0.0004873294346978557, 0.11647173489278752, 0.1145224171539961, 0.001949317738791423, 0.0009746588693957114, 0.0009746588693957114, 0.0009746588693957114, 0.0004873294346978557, 0.0004873294346978557, 0.0004873294346978557, 0.0004873294346978557, 0.0004873294346978557, 0.0004873294346978557, 0.0009746588693957114, 0.0009746588693957114, 0.0009746588693957114, 0.0009746588693957114, 0.0014619883040935672, 0.001949317738791423, 0.0024366471734892786, 0.003898635477582846, 0.005360623781676413, 0.004873294346978557, 0.004873294346978557, 0.005847953216374269, 0.00682261208576998, 0.00682261208576998, 0.008284600389863547, 0.009746588693957114, 0.014619883040935672, 0.019005847953216373, 0.03557504873294347, 0.06676413255360623, 0.1442495126705653, 0.29678362573099415], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/FliP.gap.json b/pfam_gap_rates/FliP.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..fb02465128771c3437e96537f3daddc4c84fd0ad
--- /dev/null
+++ b/pfam_gap_rates/FliP.gap.json
@@ -0,0 +1 @@
+{"family": "FliP", "n_seqs": 986, "length": 202, "gap_rates": [0.26267748478701824, 0.05476673427991886, 0.036511156186612576, 0.02636916835699797, 0.02028397565922921, 0.02028397565922921, 0.02028397565922921, 0.019269776876267748, 0.019269776876267748, 0.019269776876267748, 0.019269776876267748, 0.019269776876267748, 0.018255578093306288, 0.016227180527383367, 0.015212981744421906, 0.015212981744421906, 0.015212981744421906, 0.015212981744421906, 0.015212981744421906, 0.015212981744421906, 0.015212981744421906, 0.014198782961460446, 0.014198782961460446, 0.014198782961460446, 0.014198782961460446, 0.014198782961460446, 0.014198782961460446, 0.014198782961460446, 0.014198782961460446, 0.014198782961460446, 0.014198782961460446, 0.014198782961460446, 0.015212981744421906, 0.015212981744421906, 0.015212981744421906, 0.016227180527383367, 0.015212981744421906, 0.015212981744421906, 0.016227180527383367, 0.015212981744421906, 0.015212981744421906, 0.015212981744421906, 0.015212981744421906, 0.014198782961460446, 0.014198782961460446, 0.014198782961460446, 0.014198782961460446, 0.013184584178498986, 0.013184584178498986, 0.013184584178498986, 0.013184584178498986, 0.013184584178498986, 0.013184584178498986, 0.013184584178498986, 0.011156186612576065, 0.011156186612576065, 0.011156186612576065, 0.011156186612576065, 0.011156186612576065, 0.011156186612576065, 0.011156186612576065, 0.011156186612576065, 0.011156186612576065, 0.011156186612576065, 0.011156186612576065, 0.012170385395537525, 0.012170385395537525, 0.011156186612576065, 0.013184584178498986, 0.014198782961460446, 0.011156186612576065, 0.011156186612576065, 0.014198782961460446, 0.013184584178498986, 0.012170385395537525, 0.011156186612576065, 0.013184584178498986, 0.014198782961460446, 0.011156186612576065, 0.9462474645030426, 0.011156186612576065, 0.011156186612576065, 0.011156186612576065, 0.011156186612576065, 0.011156186612576065, 0.011156186612576065, 0.011156186612576065, 0.011156186612576065, 0.012170385395537525, 0.012170385395537525, 0.012170385395537525, 0.012170385395537525, 0.012170385395537525, 0.012170385395537525, 0.012170385395537525, 0.013184584178498986, 0.012170385395537525, 0.012170385395537525, 0.012170385395537525, 0.012170385395537525, 0.012170385395537525, 0.012170385395537525, 0.012170385395537525, 0.012170385395537525, 0.012170385395537525, 0.012170385395537525, 0.012170385395537525, 0.012170385395537525, 0.012170385395537525, 0.014198782961460446, 0.019269776876267748, 0.11866125760649088, 0.8062880324543611, 0.8742393509127789, 0.859026369168357, 0.7494929006085193, 0.061866125760649086, 0.019269776876267748, 0.08519269776876268, 0.09026369168356999, 0.08924949290060852, 0.0872210953346856, 0.013184584178498986, 0.8833671399594321, 0.9107505070993914, 0.8884381338742393, 0.8823529411764706, 0.014198782961460446, 0.013184584178498986, 0.013184584178498986, 0.012170385395537525, 0.012170385395537525, 0.012170385395537525, 0.012170385395537525, 0.011156186612576065, 0.011156186612576065, 0.011156186612576065, 0.010141987829614604, 0.010141987829614604, 0.010141987829614604, 0.010141987829614604, 0.010141987829614604, 0.010141987829614604, 0.010141987829614604, 0.011156186612576065, 0.011156186612576065, 0.011156186612576065, 0.011156186612576065, 0.011156186612576065, 0.011156186612576065, 0.011156186612576065, 0.011156186612576065, 0.011156186612576065, 0.011156186612576065, 0.011156186612576065, 0.011156186612576065, 0.011156186612576065, 0.011156186612576065, 0.011156186612576065, 0.011156186612576065, 0.011156186612576065, 0.011156186612576065, 0.011156186612576065, 0.011156186612576065, 0.011156186612576065, 0.011156186612576065, 0.011156186612576065, 0.011156186612576065, 0.011156186612576065, 0.010141987829614604, 0.010141987829614604, 0.010141987829614604, 0.010141987829614604, 0.010141987829614604, 0.010141987829614604, 0.010141987829614604, 0.010141987829614604, 0.011156186612576065, 0.011156186612576065, 0.011156186612576065, 0.011156186612576065, 0.011156186612576065, 0.012170385395537525, 0.013184584178498986, 0.013184584178498986, 0.013184584178498986, 0.013184584178498986, 0.013184584178498986, 0.013184584178498986, 0.013184584178498986, 0.013184584178498986, 0.014198782961460446, 0.014198782961460446, 0.014198782961460446, 0.014198782961460446, 0.014198782961460446, 0.014198782961460446, 0.014198782961460446, 0.014198782961460446, 0.016227180527383367, 0.02231237322515213, 0.07910750507099391], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Flp_Fap.gap.json b/pfam_gap_rates/Flp_Fap.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ae501929a72c56cdb49694e3d43501680dd09c85
--- /dev/null
+++ b/pfam_gap_rates/Flp_Fap.gap.json
@@ -0,0 +1 @@
+{"family": "Flp_Fap", "n_seqs": 508, "length": 49, "gap_rates": [0.47834645669291337, 0.25393700787401574, 0.16141732283464566, 0.1141732283464567, 0.07283464566929133, 0.04921259842519685, 0.047244094488188976, 0.047244094488188976, 0.04133858267716536, 0.03740157480314961, 0.001968503937007874, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.003937007874015748, 0.001968503937007874, 0.001968503937007874, 0.001968503937007874, 0.001968503937007874, 0.001968503937007874, 0.9468503937007874, 0.9212598425196851, 0.001968503937007874, 0.001968503937007874, 0.005905511811023622, 0.003937007874015748, 0.005905511811023622, 0.00984251968503937, 0.007874015748031496, 0.9330708661417323, 0.007874015748031496, 0.007874015748031496, 0.011811023622047244, 0.013779527559055118, 0.017716535433070866, 0.017716535433070866, 0.017716535433070866, 0.023622047244094488, 0.04330708661417323, 0.051181102362204724, 0.08661417322834646, 0.15354330708661418, 0.2854330708661417, 0.6712598425196851], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Fmp27_WPPW.gap.json b/pfam_gap_rates/Fmp27_WPPW.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..397ee7f6fbf162101697dcd16b533081f4144798
--- /dev/null
+++ b/pfam_gap_rates/Fmp27_WPPW.gap.json
@@ -0,0 +1 @@
+{"family": "Fmp27_WPPW", "n_seqs": 169, "length": 622, "gap_rates": [0.1301775147928994, 0.1301775147928994, 0.1301775147928994, 0.1301775147928994, 0.1301775147928994, 0.1301775147928994, 0.1301775147928994, 0.1301775147928994, 0.1301775147928994, 0.1301775147928994, 0.1301775147928994, 0.1301775147928994, 0.1301775147928994, 0.1301775147928994, 0.1301775147928994, 0.1301775147928994, 0.1301775147928994, 0.1301775147928994, 0.13609467455621302, 0.13609467455621302, 0.13609467455621302, 0.1301775147928994, 0.14201183431952663, 0.14792899408284024, 0.14201183431952663, 0.15384615384615385, 0.15384615384615385, 0.23076923076923078, 0.21301775147928995, 0.16568047337278108, 0.15976331360946747, 0.15384615384615385, 0.13609467455621302, 0.1242603550295858, 0.1242603550295858, 0.1242603550295858, 0.1242603550295858, 0.1242603550295858, 0.1242603550295858, 0.1242603550295858, 0.1242603550295858, 0.1242603550295858, 0.1242603550295858, 0.1242603550295858, 0.1242603550295858, 0.1242603550295858, 0.1242603550295858, 0.1242603550295858, 0.1242603550295858, 0.1242603550295858, 0.1242603550295858, 0.1242603550295858, 0.1242603550295858, 0.1242603550295858, 0.1242603550295858, 0.1242603550295858, 0.1242603550295858, 0.1242603550295858, 0.1242603550295858, 0.1242603550295858, 0.13609467455621302, 0.13609467455621302, 0.14201183431952663, 0.14201183431952663, 0.14201183431952663, 0.13609467455621302, 0.1301775147928994, 0.13609467455621302, 0.14201183431952663, 0.15384615384615385, 0.8994082840236687, 0.8579881656804734, 0.33727810650887574, 0.35502958579881655, 0.35502958579881655, 0.378698224852071, 0.40236686390532544, 0.8816568047337278, 0.39644970414201186, 0.3905325443786982, 0.591715976331361, 0.5207100591715976, 0.40236686390532544, 0.3254437869822485, 0.30177514792899407, 0.2958579881656805, 0.3076923076923077, 0.2485207100591716, 0.21893491124260356, 0.24260355029585798, 0.21893491124260356, 0.9112426035502958, 0.9112426035502958, 0.9171597633136095, 0.9289940828402367, 0.9349112426035503, 0.9349112426035503, 0.9289940828402367, 0.9171597633136095, 0.9171597633136095, 0.9112426035502958, 0.9053254437869822, 0.20710059171597633, 0.21893491124260356, 0.21301775147928995, 0.20710059171597633, 0.17751479289940827, 0.16568047337278108, 0.16568047337278108, 0.13609467455621302, 0.13609467455621302, 0.13609467455621302, 0.1301775147928994, 0.13609467455621302, 0.13609467455621302, 0.13609467455621302, 0.13609467455621302, 0.13609467455621302, 0.13609467455621302, 0.13609467455621302, 0.13609467455621302, 0.13609467455621302, 0.13609467455621302, 0.1893491124260355, 0.17751479289940827, 0.16568047337278108, 0.2781065088757396, 0.16568047337278108, 0.13609467455621302, 0.13609467455621302, 0.13609467455621302, 0.9467455621301775, 0.13609467455621302, 0.1301775147928994, 0.1301775147928994, 0.1301775147928994, 0.1301775147928994, 0.1301775147928994, 0.1301775147928994, 0.1301775147928994, 0.1301775147928994, 0.1301775147928994, 0.1301775147928994, 0.1301775147928994, 0.1301775147928994, 0.1301775147928994, 0.1301775147928994, 0.1301775147928994, 0.1301775147928994, 0.1301775147928994, 0.1301775147928994, 0.1301775147928994, 0.1301775147928994, 0.1301775147928994, 0.378698224852071, 0.35502958579881655, 0.3136094674556213, 0.3076923076923077, 0.27218934911242604, 0.26627218934911245, 0.25443786982248523, 0.25443786982248523, 0.8402366863905325, 0.9053254437869822, 0.9289940828402367, 0.9349112426035503, 0.9230769230769231, 0.8402366863905325, 0.834319526627219, 0.23668639053254437, 0.25443786982248523, 0.1893491124260355, 0.9053254437869822, 0.9289940828402367, 0.9467455621301775, 0.9467455621301775, 0.9408284023668639, 0.9053254437869822, 0.8875739644970414, 0.17159763313609466, 0.17159763313609466, 0.17159763313609466, 0.14201183431952663, 0.13609467455621302, 0.13609467455621302, 0.14201183431952663, 0.14201183431952663, 0.14792899408284024, 0.14201183431952663, 0.14201183431952663, 0.14201183431952663, 0.14201183431952663, 0.13609467455621302, 0.30177514792899407, 0.14792899408284024, 0.1834319526627219, 0.17751479289940827, 0.1834319526627219, 0.15384615384615385, 0.14792899408284024, 0.14792899408284024, 0.14792899408284024, 0.14792899408284024, 0.14792899408284024, 0.14201183431952663, 0.14201183431952663, 0.14201183431952663, 0.14201183431952663, 0.14201183431952663, 0.14201183431952663, 0.14201183431952663, 0.14201183431952663, 0.14201183431952663, 0.14792899408284024, 0.14792899408284024, 0.15384615384615385, 0.15384615384615385, 0.17751479289940827, 0.17751479289940827, 0.17751479289940827, 0.17751479289940827, 0.17751479289940827, 0.17159763313609466, 0.17751479289940827, 0.17751479289940827, 0.1834319526627219, 0.1834319526627219, 0.1834319526627219, 0.1952662721893491, 0.20710059171597633, 0.21301775147928995, 0.20710059171597633, 0.46153846153846156, 0.5621301775147929, 0.9053254437869822, 0.6568047337278107, 0.5207100591715976, 0.42011834319526625, 0.378698224852071, 0.3431952662721893, 0.3136094674556213, 0.2958579881656805, 0.28994082840236685, 0.28402366863905326, 0.27218934911242604, 0.2603550295857988, 0.25443786982248523, 0.24260355029585798, 0.2485207100591716, 0.20710059171597633, 0.20118343195266272, 0.1952662721893491, 0.1952662721893491, 0.1952662721893491, 0.1952662721893491, 0.1952662721893491, 0.20118343195266272, 0.21301775147928995, 0.21301775147928995, 0.21893491124260356, 0.21893491124260356, 0.21893491124260356, 0.21301775147928995, 0.20710059171597633, 0.20710059171597633, 0.20118343195266272, 0.20118343195266272, 0.20118343195266272, 0.20118343195266272, 0.20118343195266272, 0.20118343195266272, 0.20710059171597633, 0.20710059171597633, 0.21301775147928995, 0.378698224852071, 0.44970414201183434, 0.46153846153846156, 0.6449704142011834, 0.6686390532544378, 0.7514792899408284, 0.757396449704142, 0.8284023668639053, 0.893491124260355, 0.9171597633136095, 0.9289940828402367, 0.9408284023668639, 0.9467455621301775, 0.9467455621301775, 0.9408284023668639, 0.9408284023668639, 0.9289940828402367, 0.9053254437869822, 0.8875739644970414, 0.7692307692307693, 0.7514792899408284, 0.7218934911242604, 0.6449704142011834, 0.6094674556213018, 0.46153846153846156, 0.5384615384615384, 0.4970414201183432, 0.4911242603550296, 0.4911242603550296, 0.41420118343195267, 0.378698224852071, 0.33727810650887574, 0.3254437869822485, 0.28994082840236685, 0.2485207100591716, 0.22485207100591717, 0.21301775147928995, 0.21893491124260356, 0.21301775147928995, 0.20710059171597633, 0.21893491124260356, 0.22485207100591717, 0.23668639053254437, 0.24260355029585798, 0.23668639053254437, 0.2485207100591716, 0.22485207100591717, 0.7988165680473372, 0.8224852071005917, 0.863905325443787, 0.8816568047337278, 0.9112426035502958, 0.9230769230769231, 0.9230769230769231, 0.9171597633136095, 0.8994082840236687, 0.8698224852071006, 0.8520710059171598, 0.7988165680473372, 0.7692307692307693, 0.4378698224852071, 0.21301775147928995, 0.1834319526627219, 0.16568047337278108, 0.16568047337278108, 0.15976331360946747, 0.16568047337278108, 0.14792899408284024, 0.14201183431952663, 0.13609467455621302, 0.13609467455621302, 0.13609467455621302, 0.13609467455621302, 0.13609467455621302, 0.13609467455621302, 0.13609467455621302, 0.13609467455621302, 0.13609467455621302, 0.13609467455621302, 0.13609467455621302, 0.13609467455621302, 0.14201183431952663, 0.14201183431952663, 0.14201183431952663, 0.14201183431952663, 0.14201183431952663, 0.14201183431952663, 0.14201183431952663, 0.14201183431952663, 0.14201183431952663, 0.1301775147928994, 0.1301775147928994, 0.1301775147928994, 0.1301775147928994, 0.13609467455621302, 0.13609467455621302, 0.13609467455621302, 0.13609467455621302, 0.13609467455621302, 0.13609467455621302, 0.13609467455621302, 0.13609467455621302, 0.13609467455621302, 0.13609467455621302, 0.14201183431952663, 0.14201183431952663, 0.14201183431952663, 0.14201183431952663, 0.14201183431952663, 0.14201183431952663, 0.14201183431952663, 0.13609467455621302, 0.13609467455621302, 0.13609467455621302, 0.13609467455621302, 0.13609467455621302, 0.14201183431952663, 0.14201183431952663, 0.13609467455621302, 0.13609467455621302, 0.13609467455621302, 0.13609467455621302, 0.13609467455621302, 0.13609467455621302, 0.13609467455621302, 0.13609467455621302, 0.14201183431952663, 0.14201183431952663, 0.13609467455621302, 0.15384615384615385, 0.23076923076923078, 0.26627218934911245, 0.3136094674556213, 0.34911242603550297, 0.5266272189349113, 0.6390532544378699, 0.7159763313609467, 0.8224852071005917, 0.8816568047337278, 0.9171597633136095, 0.9408284023668639, 0.9467455621301775, 0.9349112426035503, 0.8994082840236687, 0.8520710059171598, 0.7692307692307693, 0.6627218934911243, 0.5857988165680473, 0.514792899408284, 0.3136094674556213, 0.3905325443786982, 0.3431952662721893, 0.31952662721893493, 0.3076923076923077, 0.28994082840236685, 0.2781065088757396, 0.2603550295857988, 0.28994082840236685, 0.2781065088757396, 0.28402366863905326, 0.2958579881656805, 0.14792899408284024, 0.7159763313609467, 0.7514792899408284, 0.7988165680473372, 0.8284023668639053, 0.8994082840236687, 0.9408284023668639, 0.9289940828402367, 0.8579881656804734, 0.8106508875739645, 0.7692307692307693, 0.7396449704142012, 0.7159763313609467, 0.14792899408284024, 0.15976331360946747, 0.16568047337278108, 0.17159763313609466, 0.15976331360946747, 0.15976331360946747, 0.16568047337278108, 0.16568047337278108, 0.15976331360946747, 0.15976331360946747, 0.15976331360946747, 0.16568047337278108, 0.16568047337278108, 0.17159763313609466, 0.17751479289940827, 0.17751479289940827, 0.1893491124260355, 0.25443786982248523, 0.21893491124260356, 0.3668639053254438, 0.3668639053254438, 0.3727810650887574, 0.378698224852071, 0.38461538461538464, 0.39644970414201186, 0.40828402366863903, 0.40828402366863903, 0.41420118343195267, 0.41420118343195267, 0.46153846153846156, 0.5384615384615384, 0.7100591715976331, 0.8224852071005917, 0.8520710059171598, 0.8875739644970414, 0.893491124260355, 0.9053254437869822, 0.9289940828402367, 0.9467455621301775, 0.9112426035502958, 0.893491124260355, 0.8875739644970414, 0.8816568047337278, 0.8461538461538461, 0.7751479289940828, 0.6035502958579881, 0.47337278106508873, 0.42011834319526625, 0.41420118343195267, 0.41420118343195267, 0.40828402366863903, 0.40236686390532544, 0.38461538461538464, 0.38461538461538464, 0.3727810650887574, 0.3668639053254438, 0.3668639053254438, 0.35502958579881655, 0.21301775147928995, 0.14201183431952663, 0.13609467455621302, 0.13609467455621302, 0.13609467455621302, 0.13609467455621302, 0.13609467455621302, 0.13609467455621302, 0.13609467455621302, 0.13609467455621302, 0.13609467455621302, 0.13609467455621302, 0.13609467455621302, 0.13609467455621302, 0.13609467455621302, 0.13609467455621302, 0.13609467455621302, 0.13609467455621302, 0.13609467455621302, 0.13609467455621302, 0.13609467455621302, 0.13609467455621302, 0.13609467455621302, 0.13609467455621302, 0.13609467455621302, 0.14201183431952663, 0.14792899408284024, 0.14792899408284024, 0.13609467455621302, 0.13609467455621302, 0.14201183431952663, 0.15384615384615385, 0.13609467455621302, 0.13609467455621302, 0.13609467455621302, 0.14201183431952663, 0.13609467455621302, 0.14201183431952663, 0.14792899408284024, 0.14792899408284024, 0.14792899408284024, 0.14792899408284024, 0.14792899408284024, 0.14792899408284024, 0.14792899408284024, 0.893491124260355, 0.9230769230769231, 0.9230769230769231, 0.9112426035502958, 0.8816568047337278, 0.14792899408284024, 0.15384615384615385, 0.15384615384615385, 0.15384615384615385, 0.1893491124260355, 0.15976331360946747, 0.14792899408284024, 0.14792899408284024, 0.14792899408284024, 0.14792899408284024, 0.15384615384615385, 0.17751479289940827, 0.14792899408284024, 0.14792899408284024, 0.14792899408284024, 0.14792899408284024, 0.14792899408284024, 0.14792899408284024, 0.15384615384615385, 0.15384615384615385, 0.15384615384615385, 0.15384615384615385, 0.15384615384615385, 0.15384615384615385, 0.15384615384615385, 0.15384615384615385, 0.15384615384615385, 0.15976331360946747, 0.17159763313609466, 0.23668639053254437, 0.2603550295857988, 0.28402366863905326, 0.2958579881656805, 0.3076923076923077, 0.31952662721893493, 0.3254437869822485, 0.5207100591715976, 0.41420118343195267, 0.3727810650887574, 0.3727810650887574, 0.3668639053254438, 0.3609467455621302, 0.35502958579881655, 0.3905325443786982, 0.3668639053254438, 0.3668639053254438, 0.3727810650887574, 0.3727810650887574, 0.3727810650887574, 0.3668639053254438, 0.3668639053254438, 0.42011834319526625, 0.4319526627218935, 0.38461538461538464, 0.35502958579881655, 0.9349112426035503, 0.35502958579881655, 0.35502958579881655, 0.35502958579881655, 0.35502958579881655, 0.3609467455621302, 0.3609467455621302, 0.3609467455621302, 0.3609467455621302, 0.3905325443786982, 0.514792899408284], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Folliculin.gap.json b/pfam_gap_rates/Folliculin.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..db499e165c9964ec1b76c5f9c8c505f05c367192
--- /dev/null
+++ b/pfam_gap_rates/Folliculin.gap.json
@@ -0,0 +1 @@
+{"family": "Folliculin", "n_seqs": 205, "length": 266, "gap_rates": [0.7609756097560976, 0.32682926829268294, 0.2780487804878049, 0.2634146341463415, 0.25365853658536586, 0.24878048780487805, 0.24390243902439024, 0.23902439024390243, 0.28292682926829266, 0.2926829268292683, 0.23902439024390243, 0.22439024390243903, 0.22439024390243903, 0.21951219512195122, 0.21951219512195122, 0.2146341463414634, 0.21951219512195122, 0.2146341463414634, 0.2146341463414634, 0.2146341463414634, 0.2097560975609756, 0.1951219512195122, 0.11707317073170732, 0.11707317073170732, 0.1073170731707317, 0.1073170731707317, 0.1024390243902439, 0.1024390243902439, 0.1024390243902439, 0.1024390243902439, 0.1073170731707317, 0.11219512195121951, 0.11219512195121951, 0.6585365853658537, 0.6585365853658537, 0.6634146341463415, 0.6682926829268293, 0.6682926829268293, 0.6682926829268293, 0.6780487804878049, 0.7658536585365854, 0.7658536585365854, 0.7658536585365854, 0.7658536585365854, 0.7658536585365854, 0.7804878048780488, 0.8097560975609757, 0.8585365853658536, 0.8682926829268293, 0.8780487804878049, 0.9219512195121952, 0.9219512195121952, 0.926829268292683, 0.9219512195121952, 0.9024390243902439, 0.8682926829268293, 0.8682926829268293, 0.8536585365853658, 0.7804878048780488, 0.7707317073170732, 0.7658536585365854, 0.7658536585365854, 0.7658536585365854, 0.7658536585365854, 0.6829268292682927, 0.6731707317073171, 0.6682926829268293, 0.6682926829268293, 0.6634146341463415, 0.6585365853658537, 0.6585365853658537, 0.5609756097560976, 0.526829268292683, 0.11219512195121951, 0.09268292682926829, 0.07804878048780488, 0.07804878048780488, 0.07804878048780488, 0.07804878048780488, 0.07804878048780488, 0.07804878048780488, 0.07804878048780488, 0.08292682926829269, 0.08780487804878048, 0.06829268292682927, 0.05365853658536585, 0.04878048780487805, 0.8975609756097561, 0.04390243902439024, 0.04390243902439024, 0.03902439024390244, 0.03902439024390244, 0.03902439024390244, 0.03902439024390244, 0.03902439024390244, 0.04390243902439024, 0.04390243902439024, 0.04390243902439024, 0.04390243902439024, 0.04390243902439024, 0.04390243902439024, 0.04390243902439024, 0.04390243902439024, 0.04390243902439024, 0.04390243902439024, 0.04390243902439024, 0.04390243902439024, 0.04390243902439024, 0.04390243902439024, 0.04390243902439024, 0.04390243902439024, 0.04390243902439024, 0.04390243902439024, 0.04390243902439024, 0.04390243902439024, 0.04878048780487805, 0.04878048780487805, 0.7463414634146341, 0.03902439024390244, 0.03902439024390244, 0.03902439024390244, 0.02926829268292683, 0.02926829268292683, 0.02926829268292683, 0.02926829268292683, 0.02926829268292683, 0.03414634146341464, 0.03414634146341464, 0.03414634146341464, 0.03414634146341464, 0.03902439024390244, 0.03902439024390244, 0.03902439024390244, 0.03902439024390244, 0.04390243902439024, 0.03902439024390244, 0.03902439024390244, 0.03414634146341464, 0.03902439024390244, 0.03902439024390244, 0.04390243902439024, 0.04878048780487805, 0.04878048780487805, 0.04878048780487805, 0.05365853658536585, 0.06341463414634146, 0.07317073170731707, 0.08292682926829269, 0.08292682926829269, 0.08292682926829269, 0.09268292682926829, 0.08780487804878048, 0.13658536585365855, 0.15121951219512195, 0.17560975609756097, 0.2731707317073171, 0.36585365853658536, 0.4975609756097561, 0.5658536585365853, 0.5707317073170731, 0.5853658536585366, 0.5317073170731708, 0.5951219512195122, 0.6146341463414634, 0.6487804878048781, 0.6634146341463415, 0.6878048780487804, 0.7073170731707317, 0.7268292682926829, 0.7463414634146341, 0.7560975609756098, 0.7658536585365854, 0.7804878048780488, 0.7902439024390244, 0.8, 0.8146341463414634, 0.8439024390243902, 0.8780487804878049, 0.8780487804878049, 0.8926829268292683, 0.9073170731707317, 0.926829268292683, 0.9317073170731708, 0.9365853658536586, 0.9463414634146341, 0.9463414634146341, 0.9317073170731708, 0.926829268292683, 0.9121951219512195, 0.8975609756097561, 0.8780487804878049, 0.8780487804878049, 0.8536585365853658, 0.824390243902439, 0.8146341463414634, 0.7902439024390244, 0.7853658536585366, 0.7707317073170732, 0.7609756097560976, 0.751219512195122, 0.7317073170731707, 0.7073170731707317, 0.697560975609756, 0.6682926829268293, 0.6585365853658537, 0.6439024390243903, 0.6, 0.5951219512195122, 0.5073170731707317, 0.6731707317073171, 0.624390243902439, 0.5902439024390244, 0.526829268292683, 0.4146341463414634, 0.3804878048780488, 0.36585365853658536, 0.4195121951219512, 0.3902439024390244, 0.3804878048780488, 0.3951219512195122, 0.375609756097561, 0.3902439024390244, 0.5170731707317073, 0.48292682926829267, 0.4634146341463415, 0.43414634146341463, 0.3804878048780488, 0.3902439024390244, 0.37073170731707317, 0.32195121951219513, 0.3121951219512195, 0.2926829268292683, 0.25365853658536586, 0.2682926829268293, 0.24878048780487805, 0.37073170731707317, 0.3121951219512195, 0.9365853658536586, 0.926829268292683, 0.23414634146341465, 0.23414634146341465, 0.23414634146341465, 0.23414634146341465, 0.23902439024390243, 0.23902439024390243, 0.23902439024390243, 0.24390243902439024, 0.24390243902439024, 0.24390243902439024, 0.24878048780487805, 0.25365853658536586, 0.2634146341463415, 0.2682926829268293, 0.2731707317073171, 0.2731707317073171, 0.2731707317073171, 0.2731707317073171, 0.2731707317073171, 0.2731707317073171, 0.2731707317073171, 0.2731707317073171, 0.2731707317073171, 0.2731707317073171, 0.2731707317073171, 0.2780487804878049, 0.40487804878048783], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Form-deh_trans.gap.json b/pfam_gap_rates/Form-deh_trans.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..3a1e85d8bbc9b39e040e3f9652fb685ef0f015f6
--- /dev/null
+++ b/pfam_gap_rates/Form-deh_trans.gap.json
@@ -0,0 +1 @@
+{"family": "Form-deh_trans", "n_seqs": 103, "length": 44, "gap_rates": [0.04854368932038835, 0.02912621359223301, 0.009708737864077669, 0.009708737864077669, 0.009708737864077669, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.009708737864077669, 0.02912621359223301, 0.02912621359223301, 0.02912621359223301, 0.02912621359223301, 0.02912621359223301, 0.02912621359223301, 0.02912621359223301, 0.038834951456310676, 0.038834951456310676, 0.038834951456310676, 0.06796116504854369, 0.06796116504854369, 0.11650485436893204, 0.2815533980582524, 0.5631067961165048], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Frag1.gap.json b/pfam_gap_rates/Frag1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e76bd1dfe86076324a4e9b05b38f824f90fee5bd
--- /dev/null
+++ b/pfam_gap_rates/Frag1.gap.json
@@ -0,0 +1 @@
+{"family": "Frag1", "n_seqs": 754, "length": 270, "gap_rates": [0.6883289124668435, 0.47745358090185674, 0.363395225464191, 0.29442970822281167, 0.27453580901856767, 0.25862068965517243, 0.2440318302387268, 0.23342175066312998, 0.22546419098143236, 0.21750663129973474, 0.20954907161803712, 0.20424403183023873, 0.2002652519893899, 0.20557029177718833, 0.1870026525198939, 0.1830238726790451, 0.17771883289124668, 0.17374005305039789, 0.16710875331564987, 0.15782493368700265, 0.15649867374005305, 0.15251989389920426, 0.15251989389920426, 0.15251989389920426, 0.15251989389920426, 0.14854111405835543, 0.14721485411140584, 0.8992042440318302, 0.14854111405835543, 0.14456233421750664, 0.22546419098143236, 0.16312997347480107, 0.16578249336870027, 0.3779840848806366, 0.41644562334217505, 0.4297082228116711, 0.5981432360742706, 0.3912466843501326, 0.3726790450928382, 0.3594164456233422, 0.3196286472148541, 0.7161803713527851, 0.9217506631299734, 0.9496021220159151, 0.9416445623342176, 0.7559681697612732, 0.5636604774535809, 0.1220159151193634, 0.11803713527851459, 0.11140583554376658, 0.11007957559681697, 0.10212201591511937, 0.09946949602122016, 0.7175066312997348, 0.10212201591511937, 0.10079575596816977, 0.09946949602122016, 0.09946949602122016, 0.09946949602122016, 0.11273209549071618, 0.09814323607427056, 0.09416445623342175, 0.09151193633952255, 0.09151193633952255, 0.09151193633952255, 0.09151193633952255, 0.09151193633952255, 0.09018567639257294, 0.08885941644562334, 0.08488063660477453, 0.08090185676392574, 0.08090185676392574, 0.08222811671087533, 0.07824933687002653, 0.07824933687002653, 0.07692307692307693, 0.07957559681697612, 0.08090185676392574, 0.07559681697612732, 0.07559681697612732, 0.07559681697612732, 0.07294429708222812, 0.07294429708222812, 0.07427055702917772, 0.07559681697612732, 0.07957559681697612, 0.7679045092838196, 0.7851458885941645, 0.9376657824933687, 0.9482758620689655, 0.9429708222811671, 0.916445623342175, 0.773209549071618, 0.7625994694960212, 0.08355437665782493, 0.10610079575596817, 0.10477453580901856, 0.10079575596816977, 0.09814323607427056, 0.09814323607427056, 0.10477453580901856, 0.2493368700265252, 0.2440318302387268, 0.35013262599469497, 0.3129973474801061, 0.616710875331565, 0.7612732095490716, 0.8673740053050398, 0.9456233421750663, 0.9230769230769231, 0.8196286472148541, 0.6923076923076923, 0.5928381962864722, 0.09283819628647215, 0.07427055702917772, 0.0649867374005305, 0.0610079575596817, 0.058355437665782495, 0.058355437665782495, 0.058355437665782495, 0.05570291777188329, 0.054376657824933686, 0.054376657824933686, 0.054376657824933686, 0.05702917771883289, 0.054376657824933686, 0.054376657824933686, 0.054376657824933686, 0.054376657824933686, 0.054376657824933686, 0.05702917771883289, 0.058355437665782495, 0.058355437665782495, 0.05702917771883289, 0.058355437665782495, 0.054376657824933686, 0.05702917771883289, 0.058355437665782495, 0.0623342175066313, 0.05968169761273209, 0.0636604774535809, 0.0623342175066313, 0.0623342175066313, 0.0636604774535809, 0.0649867374005305, 0.0636604774535809, 0.0636604774535809, 0.0649867374005305, 0.06631299734748011, 0.0649867374005305, 0.0649867374005305, 0.0649867374005305, 0.0649867374005305, 0.06631299734748011, 0.07161803713527852, 0.07161803713527852, 0.07161803713527852, 0.07029177718832891, 0.07161803713527852, 0.07161803713527852, 0.07161803713527852, 0.07161803713527852, 0.07161803713527852, 0.07161803713527852, 0.07294429708222812, 0.07692307692307693, 0.22281167108753316, 0.2440318302387268, 0.2480106100795756, 0.246684350132626, 0.2572944297082228, 0.27851458885941643, 0.5570291777188329, 0.8885941644562334, 0.9310344827586207, 0.9403183023872679, 0.9429708222811671, 0.9496021220159151, 0.9403183023872679, 0.9389920424403183, 0.916445623342175, 0.7400530503978779, 0.5795755968169761, 0.5318302387267905, 0.1856763925729443, 0.1259946949602122, 0.11273209549071618, 0.09814323607427056, 0.09018567639257294, 0.08488063660477453, 0.08222811671087533, 0.08355437665782493, 0.08222811671087533, 0.08355437665782493, 0.08488063660477453, 0.08355437665782493, 0.08355437665782493, 0.08885941644562334, 0.08753315649867374, 0.08620689655172414, 0.08753315649867374, 0.08885941644562334, 0.08753315649867374, 0.09946949602122016, 0.09283819628647215, 0.09283819628647215, 0.09416445623342175, 0.09416445623342175, 0.09681697612732096, 0.10610079575596817, 0.10875331564986737, 0.11273209549071618, 0.11671087533156499, 0.1220159151193634, 0.2413793103448276, 0.27320954907161804, 0.29045092838196285, 0.363395225464191, 0.40583554376657827, 0.7944297082228117, 0.8050397877984085, 0.8222811671087533, 0.8289124668435013, 0.8541114058355438, 0.8620689655172413, 0.9071618037135278, 0.916445623342175, 0.9416445623342176, 0.946949602122016, 0.9350132625994695, 0.9098143236074271, 0.870026525198939, 0.8607427055702918, 0.850132625994695, 0.8262599469496021, 0.8196286472148541, 0.7984084880636605, 0.7904509283819628, 0.3952254641909814, 0.3885941644562334, 0.32360742705570295, 0.24005305039787797, 0.22679045092838196, 0.13793103448275862, 0.13527851458885942, 0.13793103448275862, 0.13793103448275862, 0.13925729442970822, 0.1419098143236074, 0.14456233421750664, 0.14456233421750664, 0.14323607427055704, 0.14323607427055704, 0.14323607427055704, 0.14323607427055704, 0.14323607427055704, 0.14588859416445624, 0.14588859416445624, 0.14721485411140584, 0.14854111405835543, 0.14986737400530503, 0.15119363395225463, 0.15649867374005305, 0.16180371352785147, 0.16843501326259946, 0.17771883289124668, 0.1870026525198939, 0.21220159151193635, 0.259946949602122, 0.4827586206896552], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/FtsJ.gap.json b/pfam_gap_rates/FtsJ.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..19a3d9cb51b6b9d9a960e676b10d34b5eeaa79d9
--- /dev/null
+++ b/pfam_gap_rates/FtsJ.gap.json
@@ -0,0 +1 @@
+{"family": "FtsJ", "n_seqs": 3625, "length": 248, "gap_rates": [0.24689655172413794, 0.1646896551724138, 0.1006896551724138, 0.09131034482758621, 0.08496551724137931, 0.08413793103448276, 0.08220689655172414, 0.08055172413793103, 0.07558620689655172, 0.07448275862068965, 0.07282758620689656, 0.07117241379310345, 0.07089655172413793, 0.06896551724137931, 0.06675862068965517, 0.0653793103448276, 0.06482758620689655, 0.9313103448275862, 0.2866206896551724, 0.06841379310344828, 0.06648275862068966, 0.7017931034482758, 0.059586206896551724, 0.052689655172413793, 0.05655172413793103, 0.041379310344827586, 0.9293793103448276, 0.9373793103448276, 0.9426206896551724, 0.9398620689655173, 0.9318620689655173, 0.9291034482758621, 0.040275862068965516, 0.03944827586206896, 0.03917241379310345, 0.03889655172413793, 0.03917241379310345, 0.038620689655172416, 0.038620689655172416, 0.038620689655172416, 0.03944827586206896, 0.03944827586206896, 0.03917241379310345, 0.039724137931034485, 0.03751724137931035, 0.03668965517241379, 0.03696551724137931, 0.03806896551724138, 0.040275862068965516, 0.039724137931034485, 0.4595862068965517, 0.888, 0.8932413793103449, 0.902896551724138, 0.9177931034482759, 0.9329655172413793, 0.9456551724137932, 0.9395862068965517, 0.9266206896551724, 0.911448275862069, 0.8971034482758621, 0.8896551724137931, 0.887448275862069, 0.08, 0.15475862068965518, 0.8695172413793103, 0.9299310344827586, 0.9451034482758621, 0.8877241379310344, 0.8521379310344828, 0.49682758620689654, 0.03696551724137931, 0.03586206896551724, 0.03531034482758621, 0.03531034482758621, 0.03531034482758621, 0.03503448275862069, 0.03531034482758621, 0.03531034482758621, 0.03586206896551724, 0.03613793103448276, 0.0336551724137931, 0.5605517241379311, 0.6259310344827587, 0.9081379310344827, 0.9412413793103448, 0.9489655172413793, 0.9299310344827586, 0.8995862068965518, 0.6049655172413793, 0.5511724137931034, 0.03531034482758621, 0.10455172413793104, 0.06206896551724138, 0.6107586206896551, 0.9310344827586207, 0.887448275862069, 0.5815172413793104, 0.062344827586206894, 0.05986206896551724, 0.05931034482758621, 0.05710344827586207, 0.05627586206896552, 0.04386206896551724, 0.9128275862068965, 0.9451034482758621, 0.9478620689655173, 0.9266206896551724, 0.5586206896551724, 0.044137931034482755, 0.04496551724137931, 0.04551724137931035, 0.04717241379310345, 0.049379310344827586, 0.048827586206896555, 0.05075862068965517, 0.06455172413793103, 0.05986206896551724, 0.06041379310344828, 0.06289655172413793, 0.18013793103448275, 0.1249655172413793, 0.1373793103448276, 0.28220689655172415, 0.40027586206896554, 0.40606896551724136, 0.4126896551724138, 0.35365517241379313, 0.8460689655172414, 0.8711724137931034, 0.9062068965517242, 0.910896551724138, 0.9175172413793103, 0.9288275862068965, 0.9417931034482758, 0.9489655172413793, 0.9437241379310345, 0.9373793103448276, 0.9227586206896552, 0.9139310344827586, 0.9086896551724138, 0.8984827586206896, 0.8504827586206897, 0.8278620689655173, 0.31696551724137934, 0.09020689655172413, 0.04855172413793103, 0.04744827586206896, 0.04579310344827586, 0.04551724137931035, 0.04551724137931035, 0.04551724137931035, 0.04551724137931035, 0.04468965517241379, 0.04855172413793103, 0.44248275862068964, 0.07944827586206897, 0.07641379310344827, 0.07917241379310345, 0.08082758620689655, 0.08855172413793104, 0.0846896551724138, 0.08275862068965517, 0.0833103448275862, 0.08220689655172414, 0.08275862068965517, 0.0846896551724138, 0.0846896551724138, 0.08413793103448276, 0.6262068965517241, 0.6278620689655172, 0.6386206896551724, 0.6518620689655172, 0.6460689655172414, 0.6350344827586207, 0.6270344827586207, 0.6248275862068966, 0.08606896551724139, 0.08579310344827586, 0.08606896551724139, 0.08606896551724139, 0.08689655172413793, 0.08689655172413793, 0.08689655172413793, 0.08772413793103448, 0.08772413793103448, 0.08910344827586207, 0.09324137931034483, 0.09186206896551724, 0.09379310344827586, 0.0943448275862069, 0.09241379310344827, 0.09296551724137932, 0.10096551724137931, 0.09875862068965517, 0.10979310344827586, 0.10041379310344828, 0.10124137931034483, 0.10317241379310345, 0.10593103448275862, 0.1056551724137931, 0.10620689655172413, 0.10868965517241379, 0.10951724137931035, 0.9169655172413793, 0.11724137931034483, 0.1183448275862069, 0.1183448275862069, 0.11972413793103448, 0.12, 0.9244137931034483, 0.11972413793103448, 0.11917241379310345, 0.11972413793103448, 0.12137931034482759, 0.12220689655172413, 0.743448275862069, 0.12524137931034482, 0.128, 0.9175172413793103, 0.12855172413793103, 0.128, 0.12827586206896552, 0.12855172413793103, 0.12855172413793103, 0.13158620689655173, 0.13186206896551725, 0.13241379310344828, 0.13324137931034483, 0.1343448275862069, 0.1357241379310345, 0.13793103448275862, 0.13848275862068965, 0.13903448275862068, 0.1395862068965517, 0.1406896551724138, 0.1423448275862069, 0.14372413793103447, 0.14593103448275863, 0.14868965517241378, 0.14868965517241378, 0.1522758620689655, 0.15724137931034482, 0.18317241379310345, 0.2303448275862069, 0.31696551724137934, 0.4573793103448276, 0.6540689655172414], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Fucose_iso_C.gap.json b/pfam_gap_rates/Fucose_iso_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c161e24e76908d16e3584950c1ad719a2a7c93cd
--- /dev/null
+++ b/pfam_gap_rates/Fucose_iso_C.gap.json
@@ -0,0 +1 @@
+{"family": "Fucose_iso_C", "n_seqs": 451, "length": 172, "gap_rates": [0.5188470066518847, 0.21507760532150777, 0.19068736141906872, 0.19068736141906872, 0.19068736141906872, 0.19068736141906872, 0.19068736141906872, 0.19068736141906872, 0.5986696230598669, 0.5942350332594235, 0.5875831485587583, 0.5875831485587583, 0.5787139689578714, 0.5676274944567627, 0.3835920177383592, 0.6651884700665188, 0.6651884700665188, 0.6651884700665188, 0.6651884700665188, 0.6674057649667405, 0.6696230598669624, 0.6696230598669624, 0.6718403547671841, 0.7760532150776053, 0.6718403547671841, 0.6696230598669624, 0.6696230598669624, 0.6651884700665188, 0.6651884700665188, 0.6651884700665188, 0.6651884700665188, 0.656319290465632, 0.19955654101995565, 0.1973392461197339, 0.1951219512195122, 0.2017738359201774, 0.1951219512195122, 0.18181818181818182, 0.25277161862527714, 0.188470066518847, 0.18403547671840353, 0.18403547671840353, 0.17738359201773837, 0.17516629711751663, 0.17073170731707318, 0.16851441241685144, 0.1574279379157428, 0.1574279379157428, 0.15521064301552107, 0.14412416851441243, 0.15964523281596452, 0.12638580931263857, 0.11086474501108648, 0.09977827050997783, 0.0975609756097561, 0.8780487804878049, 0.8802660753880266, 0.8780487804878049, 0.8780487804878049, 0.2039911308203991, 0.1951219512195122, 0.11086474501108648, 0.082039911308204, 0.07538802660753881, 0.06651884700665188, 0.06208425720620843, 0.04212860310421286, 0.026607538802660754, 0.015521064301552107, 0.011086474501108648, 0.0066518847006651885, 0.0066518847006651885, 0.0066518847006651885, 0.0066518847006651885, 0.004434589800443459, 0.004434589800443459, 0.004434589800443459, 0.004434589800443459, 0.004434589800443459, 0.29933481152993346, 0.4057649667405765, 0.015521064301552107, 0.0066518847006651885, 0.0066518847006651885, 0.0066518847006651885, 0.024390243902439025, 0.008869179600886918, 0.3614190687361419, 0.0066518847006651885, 0.0066518847006651885, 0.0066518847006651885, 0.0066518847006651885, 0.0066518847006651885, 0.004434589800443459, 0.004434589800443459, 0.0066518847006651885, 0.013303769401330377, 0.011086474501108648, 0.011086474501108648, 0.0066518847006651885, 0.008869179600886918, 0.0066518847006651885, 0.008869179600886918, 0.031042128603104215, 0.015521064301552107, 0.019955654101995565, 0.024390243902439025, 0.026607538802660754, 0.017738359201773836, 0.008869179600886918, 0.008869179600886918, 0.008869179600886918, 0.011086474501108648, 0.008869179600886918, 0.011086474501108648, 0.19290465631929046, 0.013303769401330377, 0.013303769401330377, 0.013303769401330377, 0.011086474501108648, 0.008869179600886918, 0.5764966740576497, 0.5631929046563193, 0.5587583148558758, 0.5587583148558758, 0.5565410199556541, 0.5144124168514412, 0.656319290465632, 0.6607538802660754, 0.6607538802660754, 0.6762749445676275, 0.6607538802660754, 0.656319290465632, 0.647450110864745, 0.011086474501108648, 0.008869179600886918, 0.008869179600886918, 0.008869179600886918, 0.008869179600886918, 0.008869179600886918, 0.011086474501108648, 0.008869179600886918, 0.008869179600886918, 0.011086474501108648, 0.011086474501108648, 0.013303769401330377, 0.013303769401330377, 0.013303769401330377, 0.017738359201773836, 0.028824833702882482, 0.031042128603104215, 0.03325942350332594, 0.03547671840354767, 0.03547671840354767, 0.037694013303769404, 0.04212860310421286, 0.04212860310421286, 0.04212860310421286, 0.04212860310421286, 0.04212860310421286, 0.8736141906873615, 0.050997782705099776, 0.050997782705099776, 0.050997782705099776, 0.057649667405764965, 0.06208425720620843, 0.07095343680709534, 0.24611973392461198, 0.3259423503325942, 0.8292682926829268, 0.6097560975609756, 0.6607538802660754], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Fz.gap.json b/pfam_gap_rates/Fz.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..55edf23a64e75f044211207ee336c00424b4757a
--- /dev/null
+++ b/pfam_gap_rates/Fz.gap.json
@@ -0,0 +1 @@
+{"family": "Fz", "n_seqs": 1139, "length": 131, "gap_rates": [0.218612818261633, 0.20719929762949957, 0.20280948200175591, 0.18788410886742757, 0.8639157155399473, 0.845478489903424, 0.18349429323968394, 0.17822651448639157, 0.15715539947322213, 0.14047410008779632, 0.13432835820895522, 0.13432835820895522, 0.1334503950834065, 0.1299385425812116, 0.8428446005267779, 0.12291483757682177, 0.1202809482001756, 0.12115891132572432, 0.12467076382791922, 0.11589113257243196, 0.12291483757682177, 0.12554872695346794, 0.10623353819139596, 0.09920983318700614, 0.11589113257243196, 0.11325724319578578, 0.10886742756804214, 0.10623353819139596, 0.10886742756804214, 0.1044776119402985, 0.10711150131694469, 0.1044776119402985, 0.1466198419666374, 0.11501316944688324, 0.12554872695346794, 0.09569798068481124, 0.08077260755048288, 0.05794556628621598, 0.05443371378402107, 0.05179982440737489, 0.04214223002633889, 0.9095697980684812, 0.9385425812115891, 0.8463564530289728, 0.04214223002633889, 0.04214223002633889, 0.03775241439859526, 0.03424056189640035, 0.03687445127304653, 0.03687445127304653, 0.8788410886742757, 0.9306409130816505, 0.8059701492537313, 0.024582967515364356, 0.02370500438981563, 0.025460930640913083, 0.025460930640913083, 0.027216856892010536, 0.02633889376646181, 0.02633889376646181, 0.024582967515364356, 0.021949078138718173, 0.0228270412642669, 0.0228270412642669, 0.021071115013169446, 0.01755926251097454, 0.018437225636523266, 0.018437225636523266, 0.019315188762071993, 0.019315188762071993, 0.016681299385425813, 0.257243195785777, 0.9473222124670764, 0.3942054433713784, 0.4310798946444249, 0.4003511852502195, 0.22914837576821773, 0.2019315188762072, 0.25636523266022826, 0.12818261633011413, 0.0228270412642669, 0.021949078138718173, 0.021071115013169446, 0.021949078138718173, 0.019315188762071993, 0.019315188762071993, 0.021071115013169446, 0.024582967515364356, 0.025460930640913083, 0.025460930640913083, 0.025460930640913083, 0.8928884986830553, 0.02633889376646181, 0.0324846356453029, 0.0456540825285338, 0.035996488147497806, 0.03775241439859526, 0.038630377524143986, 0.041264266900790166, 0.048287971905179985, 0.05706760316066725, 0.9446883230904302, 0.8726953467954346, 0.14223002633889376, 0.19402985074626866, 0.16505706760316066, 0.13871817383669885, 0.10974539069359086, 0.8779631255487269, 0.8858647936786654, 0.8964003511852502, 0.9086918349429324, 0.8990342405618964, 0.8928884986830553, 0.8849868305531168, 0.8718173836698858, 0.08604038630377524, 0.08604038630377524, 0.08955223880597014, 0.3099209833187006, 0.25636523266022826, 0.17822651448639157, 0.08340649692712906, 0.08340649692712906, 0.08516242317822652, 0.09657594381035997, 0.12467076382791922, 0.14047410008779632, 0.20983318700614575, 0.4240561896400351, 0.646180860403863], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/G-gamma.gap.json b/pfam_gap_rates/G-gamma.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e907146d57cf68511b9e2ae922c9d1e5ac234abe
--- /dev/null
+++ b/pfam_gap_rates/G-gamma.gap.json
@@ -0,0 +1 @@
+{"family": "G-gamma", "n_seqs": 728, "length": 78, "gap_rates": [0.7225274725274725, 0.5686813186813187, 0.38461538461538464, 0.2802197802197802, 0.1813186813186813, 0.11263736263736264, 0.07005494505494506, 0.06043956043956044, 0.04945054945054945, 0.03983516483516483, 0.6483516483516484, 0.03296703296703297, 0.03296703296703297, 0.03021978021978022, 0.0260989010989011, 0.023351648351648352, 0.02197802197802198, 0.023351648351648352, 0.023351648351648352, 0.019230769230769232, 0.8447802197802198, 0.017857142857142856, 0.017857142857142856, 0.01098901098901099, 0.8708791208791209, 0.006868131868131868, 0.006868131868131868, 0.006868131868131868, 0.005494505494505495, 0.004120879120879121, 0.004120879120879121, 0.0027472527472527475, 0.0027472527472527475, 0.0013736263736263737, 0.0027472527472527475, 0.0027472527472527475, 0.004120879120879121, 0.004120879120879121, 0.004120879120879121, 0.3516483516483517, 0.33653846153846156, 0.004120879120879121, 0.0027472527472527475, 0.0027472527472527475, 0.0027472527472527475, 0.004120879120879121, 0.004120879120879121, 0.006868131868131868, 0.006868131868131868, 0.008241758241758242, 0.01510989010989011, 0.6085164835164835, 0.945054945054945, 0.48626373626373626, 0.4807692307692308, 0.18681318681318682, 0.5604395604395604, 0.25961538461538464, 0.22252747252747251, 0.20741758241758243, 0.027472527472527472, 0.027472527472527472, 0.027472527472527472, 0.028846153846153848, 0.03296703296703297, 0.034340659340659344, 0.771978021978022, 0.8942307692307693, 0.875, 0.7129120879120879, 0.3914835164835165, 0.09065934065934066, 0.09065934065934066, 0.9230769230769231, 0.10027472527472528, 0.13186813186813187, 0.23763736263736263, 0.5384615384615384], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/G-patch.gap.json b/pfam_gap_rates/G-patch.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..74dd18e56d3fb1b9f9f71cf73d91bdbbe3d4f7a4
--- /dev/null
+++ b/pfam_gap_rates/G-patch.gap.json
@@ -0,0 +1 @@
+{"family": "G-patch", "n_seqs": 2822, "length": 49, "gap_rates": [0.8022678951098512, 0.2845499645641389, 0.13926293408929838, 0.08398299078667612, 0.06236711552090716, 0.0556343019135365, 0.04819277108433735, 0.0407512402551382, 0.019489723600283487, 0.01771793054571226, 0.016654854712969524, 0.0074415308291991495, 0.006732813607370659, 0.0063784549964564135, 0.006024096385542169, 0.08291991495393337, 0.006024096385542169, 0.004252303330970942, 0.0074415308291991495, 0.004252303330970942, 0.004961020552799433, 0.9287739192062368, 0.9358610914245216, 0.892983699503898, 0.01559177888022679, 0.03614457831325301, 0.059532246633593196, 0.07228915662650602, 0.07016300496102056, 0.07725017717930546, 0.08079376328844791, 0.08752657689581857, 0.0892983699503898, 0.09071580439404678, 0.0956768249468462, 0.10099220411055988, 0.10701630049610206, 0.11339475549255847, 0.11906449326718639, 0.12402551381998582, 0.13253012048192772, 0.13855421686746988, 0.9156626506024096, 0.14847625797306874, 0.15839829907866762, 0.1810772501771793, 0.24734231041814317, 0.4879518072289157, 0.8649893692416726], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/G2F.gap.json b/pfam_gap_rates/G2F.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..fbad0ee7afcc78648fc41a3446dc05950908d447
--- /dev/null
+++ b/pfam_gap_rates/G2F.gap.json
@@ -0,0 +1 @@
+{"family": "G2F", "n_seqs": 137, "length": 199, "gap_rates": [0.36496350364963503, 0.22627737226277372, 0.19708029197080293, 0.18248175182481752, 0.16058394160583941, 0.12408759124087591, 0.11678832116788321, 0.10218978102189781, 0.0948905109489051, 0.0948905109489051, 0.0948905109489051, 0.0948905109489051, 0.0948905109489051, 0.0948905109489051, 0.7445255474452555, 0.7445255474452555, 0.8686131386861314, 0.8613138686131386, 0.7445255474452555, 0.7372262773722628, 0.0948905109489051, 0.0948905109489051, 0.0948905109489051, 0.0948905109489051, 0.0948905109489051, 0.13138686131386862, 0.08759124087591241, 0.08759124087591241, 0.08759124087591241, 0.0948905109489051, 0.0948905109489051, 0.0948905109489051, 0.0948905109489051, 0.08759124087591241, 0.08759124087591241, 0.08759124087591241, 0.0948905109489051, 0.08759124087591241, 0.08759124087591241, 0.08759124087591241, 0.0948905109489051, 0.0948905109489051, 0.08759124087591241, 0.08759124087591241, 0.08759124087591241, 0.7007299270072993, 0.7737226277372263, 0.7299270072992701, 0.7007299270072993, 0.08759124087591241, 0.08759124087591241, 0.08759124087591241, 0.08759124087591241, 0.08759124087591241, 0.08759124087591241, 0.0948905109489051, 0.08029197080291971, 0.08759124087591241, 0.08759124087591241, 0.08759124087591241, 0.0948905109489051, 0.10218978102189781, 0.10218978102189781, 0.0948905109489051, 0.0948905109489051, 0.08759124087591241, 0.0948905109489051, 0.0948905109489051, 0.0948905109489051, 0.10218978102189781, 0.10218978102189781, 0.10218978102189781, 0.10218978102189781, 0.10218978102189781, 0.10218978102189781, 0.9343065693430657, 0.10948905109489052, 0.10948905109489052, 0.10948905109489052, 0.10948905109489052, 0.10948905109489052, 0.10948905109489052, 0.10948905109489052, 0.10948905109489052, 0.11678832116788321, 0.11678832116788321, 0.10948905109489052, 0.10948905109489052, 0.10218978102189781, 0.08759124087591241, 0.08759124087591241, 0.08759124087591241, 0.0948905109489051, 0.0948905109489051, 0.0948905109489051, 0.0948905109489051, 0.0948905109489051, 0.0948905109489051, 0.0948905109489051, 0.0948905109489051, 0.0948905109489051, 0.08759124087591241, 0.6058394160583942, 0.10218978102189781, 0.08029197080291971, 0.08029197080291971, 0.08029197080291971, 0.08029197080291971, 0.08759124087591241, 0.08759124087591241, 0.08759124087591241, 0.08759124087591241, 0.08029197080291971, 0.08029197080291971, 0.08029197080291971, 0.08759124087591241, 0.08029197080291971, 0.08029197080291971, 0.08759124087591241, 0.08759124087591241, 0.08759124087591241, 0.08029197080291971, 0.08029197080291971, 0.08029197080291971, 0.08759124087591241, 0.08029197080291971, 0.072992700729927, 0.072992700729927, 0.072992700729927, 0.072992700729927, 0.072992700729927, 0.072992700729927, 0.072992700729927, 0.072992700729927, 0.072992700729927, 0.072992700729927, 0.072992700729927, 0.072992700729927, 0.072992700729927, 0.0948905109489051, 0.08759124087591241, 0.08759124087591241, 0.08029197080291971, 0.072992700729927, 0.072992700729927, 0.072992700729927, 0.072992700729927, 0.072992700729927, 0.072992700729927, 0.072992700729927, 0.072992700729927, 0.072992700729927, 0.072992700729927, 0.072992700729927, 0.072992700729927, 0.072992700729927, 0.291970802919708, 0.06569343065693431, 0.06569343065693431, 0.06569343065693431, 0.072992700729927, 0.072992700729927, 0.072992700729927, 0.072992700729927, 0.072992700729927, 0.072992700729927, 0.072992700729927, 0.072992700729927, 0.072992700729927, 0.08029197080291971, 0.0948905109489051, 0.0948905109489051, 0.12408759124087591, 0.1678832116788321, 0.1678832116788321, 0.927007299270073, 0.9343065693430657, 0.9343065693430657, 0.9343065693430657, 0.7956204379562044, 0.6131386861313869, 0.5912408759124088, 0.43795620437956206, 0.4306569343065693, 0.11678832116788321, 0.11678832116788321, 0.11678832116788321, 0.11678832116788321, 0.11678832116788321, 0.11678832116788321, 0.11678832116788321, 0.11678832116788321, 0.11678832116788321, 0.11678832116788321, 0.13138686131386862, 0.145985401459854, 0.21897810218978103, 0.31386861313868614, 0.5620437956204379], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/G8.gap.json b/pfam_gap_rates/G8.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..baac7a8be809d6245cb5a612fcee7e3dc50689bf
--- /dev/null
+++ b/pfam_gap_rates/G8.gap.json
@@ -0,0 +1 @@
+{"family": "G8", "n_seqs": 378, "length": 146, "gap_rates": [0.5978835978835979, 0.3968253968253968, 0.3994708994708995, 0.3915343915343915, 0.36507936507936506, 0.4126984126984127, 0.8994708994708994, 0.8941798941798942, 0.30687830687830686, 0.2962962962962963, 0.164021164021164, 0.1402116402116402, 0.11904761904761904, 0.09788359788359788, 0.08465608465608465, 0.07407407407407407, 0.07407407407407407, 0.06613756613756613, 0.0873015873015873, 0.082010582010582, 0.06349206349206349, 0.06084656084656084, 0.05555555555555555, 0.047619047619047616, 0.04497354497354497, 0.04497354497354497, 0.15608465608465608, 0.8650793650793651, 0.10317460317460317, 0.05026455026455026, 0.05026455026455026, 0.042328042328042326, 0.0582010582010582, 0.8941798941798942, 0.9206349206349206, 0.9047619047619048, 0.8835978835978836, 0.031746031746031744, 0.0291005291005291, 0.026455026455026454, 0.023809523809523808, 0.023809523809523808, 0.021164021164021163, 0.010582010582010581, 0.6772486772486772, 0.49206349206349204, 0.005291005291005291, 0.005291005291005291, 0.005291005291005291, 0.005291005291005291, 0.005291005291005291, 0.38095238095238093, 0.007936507936507936, 0.026455026455026454, 0.5158730158730159, 0.8068783068783069, 0.9074074074074074, 0.9444444444444444, 0.8306878306878307, 0.7724867724867724, 0.007936507936507936, 0.007936507936507936, 0.007936507936507936, 0.005291005291005291, 0.005291005291005291, 0.005291005291005291, 0.005291005291005291, 0.005291005291005291, 0.005291005291005291, 0.005291005291005291, 0.007936507936507936, 0.013227513227513227, 0.007936507936507936, 0.1931216931216931, 0.43386243386243384, 0.005291005291005291, 0.013227513227513227, 0.0026455026455026454, 0.005291005291005291, 0.005291005291005291, 0.007936507936507936, 0.015873015873015872, 0.015873015873015872, 0.018518518518518517, 0.013227513227513227, 0.015873015873015872, 0.026455026455026454, 0.026455026455026454, 0.8677248677248677, 0.8386243386243386, 0.021164021164021163, 0.021164021164021163, 0.021164021164021163, 0.023809523809523808, 0.021164021164021163, 0.021164021164021163, 0.023809523809523808, 0.023809523809523808, 0.026455026455026454, 0.6904761904761905, 0.8677248677248677, 0.9232804232804233, 0.9444444444444444, 0.917989417989418, 0.7222222222222222, 0.6693121693121693, 0.5238095238095238, 0.42592592592592593, 0.12169312169312169, 0.11375661375661375, 0.10582010582010581, 0.10582010582010581, 0.0582010582010582, 0.06084656084656084, 0.05555555555555555, 0.05026455026455026, 0.05026455026455026, 0.05555555555555555, 0.05026455026455026, 0.05026455026455026, 0.05026455026455026, 0.05555555555555555, 0.05555555555555555, 0.06613756613756613, 0.0582010582010582, 0.29365079365079366, 0.2751322751322751, 0.3201058201058201, 0.06878306878306878, 0.05555555555555555, 0.05555555555555555, 0.0582010582010582, 0.0582010582010582, 0.0582010582010582, 0.06084656084656084, 0.06084656084656084, 0.06349206349206349, 0.06878306878306878, 0.082010582010582, 0.3492063492063492, 0.1164021164021164, 0.12169312169312169, 0.12433862433862433, 0.13227513227513227, 0.15873015873015872, 0.36243386243386244], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/GATase_7.gap.json b/pfam_gap_rates/GATase_7.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..28e4ab2a429a5615da6c4d8f10fe64cdf8c0af65
--- /dev/null
+++ b/pfam_gap_rates/GATase_7.gap.json
@@ -0,0 +1 @@
+{"family": "GATase_7", "n_seqs": 4109, "length": 137, "gap_rates": [0.6225358968118764, 0.4760282307130689, 0.4324653200292042, 0.4302750060842054, 0.4232173278169871, 0.41567291311754684, 0.7836456558773425, 0.3859819907520078, 0.34363592114869795, 0.27914334387928935, 0.23704064249209053, 0.17425164273545876, 0.13920661961547823, 0.11852032124604527, 0.10659527865660745, 0.1000243368216111, 0.09832075930883427, 0.09710391822827939, 0.49939157945972257, 0.6434655633974203, 0.20734972012655148, 0.1606230226332441, 0.10051107325383304, 0.06449257726940862, 0.08201508882939888, 0.06449257726940862, 0.056218057921635436, 0.05402774397663665, 0.051350693599415916, 0.047213433925529326, 0.0464833292771964, 0.0464833292771964, 0.04672669749330737, 0.0464833292771964, 0.04672669749330737, 0.0474568021416403, 0.04794353857386225, 0.04794353857386225, 0.049160379654417136, 0.04891701143830616, 0.049403747870528106, 0.04964711608663908, 0.04964711608663908, 0.060355317595522026, 0.07666098807495741, 0.09613044536383548, 0.14091019712825506, 0.18836699926989536, 0.08371866634217572, 0.0657094183499635, 0.059625212947189095, 0.05013385251886104, 0.041129228522754926, 0.035288391336091504, 0.03163786809442687, 0.030177658797761013, 0.028960817717206135, 0.026283767339985397, 0.023363348746653686, 0.022633244098320758, 0.029934290581650036, 0.030664395229982964, 0.02750060842054028, 0.023119980530542712, 0.028960817717206135, 0.05792163543441227, 0.6561207106351911, 0.6838646872718422, 0.8308590898028717, 0.939888050620589, 0.8598199075200779, 0.696276466293502, 0.6597712338768557, 0.6539303966901923, 0.5870041372596739, 0.6826478461912874, 0.5264054514480409, 0.013141883669992699, 0.010951569724993915, 0.009978096860550012, 0.008274519347773181, 0.007787782915551229, 0.007301046483329277, 0.007057678267218302, 0.006570941834996349, 0.004380627889997567, 0.0038938914577756143, 0.0036505232416646385, 0.002677050377220735, 0.002677050377220735, 0.002433682161109759, 0.002677050377220735, 0.002433682161109759, 0.0021903139449987834, 0.0021903139449987834, 0.002433682161109759, 0.0029204185933317107, 0.0036505232416646385, 0.0034071550255536627, 0.3463129715259187, 0.2981260647359455, 0.003163786809442687, 0.002677050377220735, 0.002677050377220735, 0.002433682161109759, 0.0034071550255536627, 0.004380627889997567, 0.010464833292771964, 0.010221465076660987, 0.010221465076660987, 0.004867364322219518, 0.004623996106108542, 0.004623996106108542, 0.004623996106108542, 0.004867364322219518, 0.005597468970552446, 0.005597468970552446, 0.006570941834996349, 0.008761255779995133, 0.18617668532489656, 0.9238257483572645, 0.888537357021173, 0.31978583596982235, 0.1968848868337795, 0.023606716962764663, 0.02433682161109759, 0.027013871988318325, 0.03139449987831589, 0.03893891457775615, 0.0474568021416403, 0.06887320515940618, 0.0778778291555123, 0.08542224385495255, 0.09661718179605744, 0.11340958870771477, 0.37697736675590166, 0.8690678997322949], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/GCD14.gap.json b/pfam_gap_rates/GCD14.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..eba4c0478d0ade09cc9e5f166725e47d387f0256
--- /dev/null
+++ b/pfam_gap_rates/GCD14.gap.json
@@ -0,0 +1 @@
+{"family": "GCD14", "n_seqs": 830, "length": 312, "gap_rates": [0.6759036144578313, 0.6421686746987951, 0.6144578313253012, 0.5951807228915663, 0.5626506024096386, 0.5506024096385542, 0.5373493975903615, 0.5277108433734939, 0.5216867469879518, 0.519277108433735, 0.5144578313253012, 0.5060240963855421, 0.463855421686747, 0.35903614457831323, 0.26385542168674697, 0.22771084337349398, 0.20602409638554217, 0.19518072289156627, 0.19036144578313252, 0.18433734939759036, 0.17710843373493976, 0.1746987951807229, 0.17349397590361446, 0.16987951807228915, 0.1686746987951807, 0.163855421686747, 0.14819277108433734, 0.14819277108433734, 0.14698795180722893, 0.14578313253012049, 0.14578313253012049, 0.14578313253012049, 0.14578313253012049, 0.14096385542168674, 0.14096385542168674, 0.14096385542168674, 0.13975903614457832, 0.13975903614457832, 0.13734939759036144, 0.13734939759036144, 0.13734939759036144, 0.13614457831325302, 0.13614457831325302, 0.13493975903614458, 0.13373493975903614, 0.13373493975903614, 0.13253012048192772, 0.13493975903614458, 0.13734939759036144, 0.13975903614457832, 0.13975903614457832, 0.13975903614457832, 0.13975903614457832, 0.14096385542168674, 0.14337349397590363, 0.14578313253012049, 0.14578313253012049, 0.14457831325301204, 0.14457831325301204, 0.15060240963855423, 0.15060240963855423, 0.15060240963855423, 0.9349397590361446, 0.9349397590361446, 0.9349397590361446, 0.17349397590361446, 0.1891566265060241, 0.1674698795180723, 0.1578313253012048, 0.14457831325301204, 0.14457831325301204, 0.14216867469879518, 0.14337349397590363, 0.14216867469879518, 0.14096385542168674, 0.14216867469879518, 0.1493975903614458, 0.14457831325301204, 0.14337349397590363, 0.14578313253012049, 0.14457831325301204, 0.14578313253012049, 0.14578313253012049, 0.14578313253012049, 0.14698795180722893, 0.14698795180722893, 0.14819277108433734, 0.14819277108433734, 0.1493975903614458, 0.15180722891566265, 0.15060240963855423, 0.15060240963855423, 0.1530120481927711, 0.8481927710843373, 0.7939759036144578, 0.15542168674698795, 0.17710843373493976, 0.9144578313253012, 0.15542168674698795, 0.1530120481927711, 0.14698795180722893, 0.14337349397590363, 0.14698795180722893, 0.15180722891566265, 0.1530120481927711, 0.1493975903614458, 0.15060240963855423, 0.17710843373493976, 0.20963855421686747, 0.172289156626506, 0.19156626506024096, 0.1855421686746988, 0.9349397590361446, 0.8156626506024096, 0.38795180722891565, 0.3578313253012048, 0.28072289156626506, 0.30843373493975906, 0.3650602409638554, 0.25542168674698795, 0.20120481927710843, 0.17951807228915662, 0.13975903614457832, 0.13975903614457832, 0.14096385542168674, 0.14216867469879518, 0.14216867469879518, 0.14216867469879518, 0.14216867469879518, 0.14216867469879518, 0.14216867469879518, 0.14096385542168674, 0.14096385542168674, 0.14216867469879518, 0.14337349397590363, 0.14337349397590363, 0.14337349397590363, 0.14337349397590363, 0.14457831325301204, 0.14457831325301204, 0.1493975903614458, 0.1686746987951807, 0.17710843373493976, 0.8855421686746988, 0.7843373493975904, 0.16265060240963855, 0.15542168674698795, 0.15180722891566265, 0.14819277108433734, 0.15060240963855423, 0.1493975903614458, 0.15060240963855423, 0.15180722891566265, 0.15180722891566265, 0.1530120481927711, 0.15421686746987953, 0.15421686746987953, 0.1530120481927711, 0.15421686746987953, 0.1530120481927711, 0.15060240963855423, 0.15180722891566265, 0.15180722891566265, 0.15180722891566265, 0.15180722891566265, 0.15180722891566265, 0.15421686746987953, 0.15542168674698795, 0.1578313253012048, 0.1566265060240964, 0.21566265060240963, 0.9253012048192771, 0.163855421686747, 0.7879518072289157, 0.1614457831325301, 0.1614457831325301, 0.16265060240963855, 0.1674698795180723, 0.163855421686747, 0.163855421686747, 0.163855421686747, 0.163855421686747, 0.16626506024096385, 0.1674698795180723, 0.1674698795180723, 0.1674698795180723, 0.1686746987951807, 0.1686746987951807, 0.18433734939759036, 0.27951807228915665, 0.39879518072289155, 0.5253012048192771, 0.555421686746988, 0.5734939759036145, 0.591566265060241, 0.608433734939759, 0.6301204819277109, 0.6373493975903615, 0.636144578313253, 0.6481927710843374, 0.6638554216867469, 0.6698795180722892, 0.6783132530120481, 0.6807228915662651, 0.6759036144578313, 0.6759036144578313, 0.6759036144578313, 0.6783132530120481, 0.7060240963855422, 0.7024096385542169, 0.7060240963855422, 0.7506024096385542, 0.7385542168674699, 0.7349397590361446, 0.7337349397590361, 0.7204819277108434, 0.7156626506024096, 0.7132530120481928, 0.7132530120481928, 0.7096385542168675, 0.7132530120481928, 0.9108433734939759, 0.9313253012048193, 0.944578313253012, 0.9421686746987952, 0.9240963855421687, 0.9, 0.7096385542168675, 0.7421686746987952, 0.7397590361445783, 0.7373493975903614, 0.7349397590361446, 0.7313253012048193, 0.7325301204819277, 0.7325301204819277, 0.7313253012048193, 0.736144578313253, 0.7457831325301205, 0.7566265060240964, 0.7879518072289157, 0.8710843373493976, 0.8891566265060241, 0.8939759036144578, 0.8987951807228916, 0.908433734939759, 0.9192771084337349, 0.9240963855421687, 0.9337349397590361, 0.9385542168674699, 0.9481927710843373, 0.9457831325301205, 0.9349397590361446, 0.9301204819277108, 0.9240963855421687, 0.9132530120481928, 0.9024096385542169, 0.8939759036144578, 0.8891566265060241, 0.8771084337349397, 0.8674698795180723, 0.7602409638554217, 0.7746987951807229, 0.7710843373493976, 0.7698795180722892, 0.7686746987951807, 0.763855421686747, 0.7650602409638554, 0.7506024096385542, 0.7397590361445783, 0.908433734939759, 0.908433734939759, 0.9096385542168675, 0.9108433734939759, 0.9108433734939759, 0.9144578313253012, 0.9144578313253012, 0.9192771084337349, 0.9253012048192771, 0.9253012048192771, 0.9301204819277108, 0.936144578313253, 0.9397590361445783, 0.946987951807229, 0.9481927710843373, 0.9421686746987952, 0.936144578313253, 0.9337349397590361, 0.9289156626506024, 0.9253012048192771, 0.9216867469879518, 0.9144578313253012, 0.9144578313253012, 0.9144578313253012, 0.9108433734939759, 0.9096385542168675, 0.9096385542168675, 0.908433734939759, 0.9072289156626506, 0.7180722891566265, 0.7168674698795181, 0.7156626506024096, 0.7156626506024096, 0.7156626506024096, 0.7156626506024096, 0.7156626506024096, 0.7156626506024096, 0.7156626506024096, 0.7168674698795181, 0.7168674698795181, 0.7240963855421687, 0.7240963855421687, 0.7349397590361446], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/GCD14_N.gap.json b/pfam_gap_rates/GCD14_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..44aee808ab538422c64df2b49ef51d8cb3a89ccb
--- /dev/null
+++ b/pfam_gap_rates/GCD14_N.gap.json
@@ -0,0 +1 @@
+{"family": "GCD14_N", "n_seqs": 271, "length": 51, "gap_rates": [0.28413284132841327, 0.24723247232472326, 0.19557195571955718, 0.11439114391143912, 0.07380073800738007, 0.05166051660516605, 0.04428044280442804, 0.04428044280442804, 0.04059040590405904, 0.03690036900369004, 0.025830258302583026, 0.02214022140221402, 0.02214022140221402, 0.02214022140221402, 0.01845018450184502, 0.01107011070110701, 0.01107011070110701, 0.014760147601476014, 0.007380073800738007, 0.0036900369003690036, 0.007380073800738007, 0.0036900369003690036, 0.0, 0.0, 0.0, 0.0036900369003690036, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.007380073800738007, 0.007380073800738007, 0.014760147601476014, 0.014760147601476014, 0.014760147601476014, 0.055350553505535055, 0.14760147601476015, 0.23616236162361623], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/GCV_T.gap.json b/pfam_gap_rates/GCV_T.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a7ff2128dca7ede915e464cd02b8a2d44a5ce922
--- /dev/null
+++ b/pfam_gap_rates/GCV_T.gap.json
@@ -0,0 +1 @@
+{"family": "GCV_T", "n_seqs": 3973, "length": 292, "gap_rates": [0.5972816511452304, 0.42209916939340547, 0.39239869116536624, 0.37175937578655927, 0.35942612635288196, 0.35187515731185504, 0.3433173923986912, 0.33601812232569844, 0.32695695947646614, 0.32368487289202114, 0.31814749559526806, 0.30581424616159075, 0.30430405235338537, 0.3002768688648377, 0.3035489554492827, 0.29599798640825575, 0.29247420085577647, 0.28920211427133147, 0.27284168134910647, 0.25320916184243647, 0.24238610621696452, 0.2388623206644853, 0.22879436194311603, 0.22401208155046565, 0.67102944877926, 0.7462874402214951, 0.7550969041026931, 0.760382582431412, 0.8323684872892021, 0.8341303800654417, 0.8361439718097156, 0.8371507676818525, 0.8439466398187767, 0.9058645859551976, 0.9126604580921218, 0.9395922476717845, 0.9375786559275107, 0.9093883715076768, 0.8547696954442486, 0.8389126604580921, 0.8368990687138183, 0.8351371759375786, 0.8341303800654417, 0.8122325698464636, 0.7563553989428643, 0.7510697206141455, 0.7435187515731185, 0.5504656430908633, 0.21419582179713062, 0.20966524037251447, 0.2066448527561037, 0.20387616410772716, 0.2018625723634533, 0.199345582683111, 0.1975836899068714, 0.19506670022652908, 0.19405990435439216, 0.1930531084822552, 0.19028441983387867, 0.1872640322174679, 0.18298514976088598, 0.17845456833626983, 0.1734205889755852, 0.1678832116788321, 0.16511452303045557, 0.16335263025421595, 0.15328467153284672, 0.1409514220991694, 0.136169141706519, 0.11980870878429399, 0.10420337276617166, 0.08230556254719355, 0.04178202869368235, 0.034986156556758116, 0.03372766171658696, 0.034231059652655424, 0.034734457588723885, 0.03574125346086081, 0.034231059652655424, 0.03548955449282658, 0.03372766171658696, 0.03196576894034735, 0.031462371004278886, 0.031462371004278886, 0.031714069972313116, 0.031714069972313116, 0.03121067203624465, 0.03095897306821042, 0.03070727410017619, 0.03095897306821042, 0.03095897306821042, 0.03095897306821042, 0.029700478228039263, 0.0810470677070224, 0.0332242637805185, 0.09287691920463126, 0.15781525295746288, 0.930279385854518, 0.03523785552479235, 0.03246916687641581, 0.031462371004278886, 0.029952177196073498, 0.029448779260005033, 0.029448779260005033, 0.029448779260005033, 0.02894538132393657, 0.02894538132393657, 0.02869368235590234, 0.02894538132393657, 0.02894538132393657, 0.02844198338786811, 0.02894538132393657, 0.029197080291970802, 0.029197080291970802, 0.029197080291970802, 0.02894538132393657, 0.02869368235590234, 0.02819028441983388, 0.02819028441983388, 0.027938585451799648, 0.02844198338786811, 0.02869368235590234, 0.02819028441983388, 0.2511955700981626, 0.04807450289453813, 0.03045557513214196, 0.03020387616410773, 0.03070727410017619, 0.029952177196073498, 0.029952177196073498, 0.029952177196073498, 0.03045557513214196, 0.03523785552479235, 0.08255726151522778, 0.08230556254719355, 0.0835640573873647, 0.07248930279385854, 0.060156053360181226, 0.055625471935565066, 0.04404731940599044, 0.03699974830103197, 0.03599295242889504, 0.034986156556758116, 0.034734457588723885, 0.03624465139692927, 0.24087591240875914, 0.05738736471180468, 0.07626478731437202, 0.6033224263780519, 0.8384092625220236, 0.9151774477724641, 0.8273345079285175, 0.5585200100679587, 0.09212182230052857, 0.05814246161590737, 0.0445507173420589, 0.047067707022401206, 0.04580921218223005, 0.046312610118298514, 0.05235338535112006, 0.058645859551975835, 0.2252705763906368, 0.14372011074754593, 0.11930531084822552, 0.1595771457337025, 0.1029448779260005, 0.09035992952428895, 0.09438711301283664, 0.09791089856531589, 0.11301283664736975, 0.1215706015605336, 0.13063176440976593, 0.13566574377045054, 0.14925748804429903, 0.15328467153284672, 0.1563050591492575, 0.15781525295746288, 0.16058394160583941, 0.16435942612635288, 0.16486282406242134, 0.16737981374276364, 0.17014850239114018, 0.17367228794361944, 0.17618927762396175, 0.8756607097910899, 0.9461364208406745, 0.9111502642839164, 0.7893279637553486, 0.2987666750566323, 0.2421344072489303, 0.21268562798892524, 0.9023408004027184, 0.8809463881198087, 0.2066448527561037, 0.20110747545935062, 0.20211427133148754, 0.3186508935313365, 0.21218223005285677, 0.20815504656430908, 0.20312106720362447, 0.20211427133148754, 0.20110747545935062, 0.20035237855524793, 0.20941354140448024, 0.22023659702995219, 0.21771960734960988, 0.22174679083815757, 0.23684872892021142, 0.8696199345582684, 0.9476466146488799, 0.8522527057639063, 0.7379813742763655, 0.22803926503901334, 0.21847470425371257, 0.20790334759627485, 0.20437956204379562, 0.2033727661716587, 0.20463126101182985, 0.2041278630757614, 0.20362446513969293, 0.20312106720362447, 0.20362446513969293, 0.20463126101182985, 0.215706015605336, 0.20765164862824062, 0.20765164862824062, 0.20387616410772716, 0.2008557764913164, 0.2001006795872137, 0.2001006795872137, 0.19909388371507677, 0.199345582683111, 0.199345582683111, 0.19959728165114524, 0.19984898061917947, 0.19959728165114524, 0.20060407752328216, 0.20110747545935062, 0.20135917442738485, 0.20060407752328216, 0.2008557764913164, 0.20110747545935062, 0.20161087339541908, 0.20110747545935062, 0.2008557764913164, 0.30933803171407, 0.4168134910646866, 0.4165617920966524, 0.3951673798137428, 0.2972564812484269, 0.30581424616159075, 0.2753586710294488, 0.24842688144978606, 0.22728416813491065, 0.20815504656430908, 0.21016863830858293, 0.2106720362446514, 0.21545431663730177, 0.21721620941354142, 0.21293732695695947, 0.215706015605336, 0.21444752076516485, 0.2116788321167883, 0.2116788321167883, 0.2139441228290964, 0.2139441228290964, 0.21268562798892524, 0.21268562798892524, 0.21293732695695947, 0.2139441228290964, 0.2149509187012333, 0.25295746287440224, 0.23785552479234834, 0.23710042788824565, 0.23785552479234834, 0.2398691165366222, 0.23810722376038257, 0.24012081550465644, 0.2413793103448276, 0.24339290208910144, 0.2486785804178203, 0.2610118298514976, 0.2589982381072238, 0.2600050339793607, 0.2617669267556003, 0.26378051849987416, 0.26453561540397685, 0.269066196828593, 0.2796375534860307, 0.3231814749559527, 0.4142965013843443, 0.6821042033727662], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/GCV_T_C.gap.json b/pfam_gap_rates/GCV_T_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..2d979082c687c78e199fd36cdf403e3e29899a91
--- /dev/null
+++ b/pfam_gap_rates/GCV_T_C.gap.json
@@ -0,0 +1 @@
+{"family": "GCV_T_C", "n_seqs": 3539, "length": 115, "gap_rates": [0.48064424978807574, 0.12771969482904774, 0.04747103701610624, 0.03532071206555524, 0.032495055100310824, 0.031082226617688613, 0.029951963831590846, 0.02910426674201752, 0.028821701045493076, 0.02797400395591975, 0.025996044080248658, 0.02740887256287087, 0.026843741169821984, 0.025148346990675332, 0.022322690025430914, 0.05905623057360836, 0.08109635490251484, 0.19694829047753604, 0.5874540830743148, 0.01893190166713761, 0.012715456343599886, 0.010172365074879909, 0.010172365074879909, 0.009889799378355468, 0.007911839502684374, 0.8943204294998587, 0.9104266742017519, 0.9423565979090138, 0.9143825939530941, 0.9025148346990676, 0.849109918055948, 0.04860129980220401, 0.06244701893190167, 0.03447301497598192, 0.922011867759254, 0.7482339643967222, 0.031364792314213054, 0.1347838372421588, 0.03588584345860413, 0.02175755863238203, 0.01469341621927098, 0.01186775925402656, 0.010172365074879909, 0.009607233681831025, 0.009324667985306585, 0.009324667985306585, 0.008194405199208816, 0.008194405199208816, 0.004238485447866629, 0.8310257134783837, 0.9056230573608364, 0.9499858717151738, 0.920033907883583, 0.8821701045493077, 0.7753602712630686, 0.5009889799378355, 0.015541113308844307, 0.005368748233964397, 0.02769143825939531, 0.01921446736366205, 0.0028256569652444193, 0.0019779598756710934, 0.0019779598756710934, 0.0019779598756710934, 0.0016953941791466515, 0.0022605255721955355, 0.002543091268719977, 0.033907883582933035, 0.03701610624470189, 0.10737496467928793, 0.09324667985306584, 0.08646510313647923, 0.09324667985306584, 0.09833286239050579, 0.04747103701610624, 0.025713478383724217, 0.025996044080248658, 0.0262786097767731, 0.0262786097767731, 0.026561175473297543, 0.028539135348968635, 0.030517095224639728, 0.13563153433173214, 0.907883582933032, 0.9302062729584628, 0.9406612037298672, 0.9163605538287651, 0.892625035320712, 0.08392201186775926, 0.10426674201751908, 0.09550720542526138, 0.09833286239050579, 0.09352924554959027, 0.10483187341056796, 0.11952528962983894, 0.12461147216727889, 0.14326080813789205, 0.12771969482904774, 0.13224074597343882, 0.13732692851087877, 0.17773382311387398, 0.9352924554959028, 0.20175190731845155, 0.18564566261655835, 0.1887538852783272, 0.19638315908448714, 0.2042949985871715, 0.211641706696807, 0.21814071771686916, 0.223792031647358, 0.24554959027974005, 0.2726758971460865, 0.35801073749646795, 0.528115286804182, 0.8694546482057078], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/GDA1_CD39.gap.json b/pfam_gap_rates/GDA1_CD39.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..9bad8858949c5a2ba0d466966bb5fab0f98759ff
--- /dev/null
+++ b/pfam_gap_rates/GDA1_CD39.gap.json
@@ -0,0 +1 @@
+{"family": "GDA1_CD39", "n_seqs": 1159, "length": 547, "gap_rates": [0.903364969801553, 0.808455565142364, 0.7411561691113029, 0.631578947368421, 0.4339948231233822, 0.32269197584124243, 0.28817946505608283, 0.27610008628127697, 0.272648835202761, 0.26056945642795515, 0.25625539257981017, 0.25625539257981017, 0.25625539257981017, 0.2553925798101812, 0.2553925798101812, 0.2553925798101812, 0.25366695427092323, 0.25366695427092323, 0.25366695427092323, 0.25194132873166525, 0.25107851596203623, 0.25194132873166525, 0.25194132873166525, 0.24935289042277825, 0.24935289042277825, 0.48748921484037966, 0.3710094909404659, 0.35806729939603105, 0.7480586712683348, 0.8119068162208801, 0.8352027610008628, 0.8843830888697153, 0.911993097497843, 0.9361518550474547, 0.9430543572044866, 0.9482312338222606, 0.9378774805867127, 0.9240724762726489, 0.8990509059534081, 0.8412424503882657, 0.8300258843830889, 0.7704918032786885, 0.7144089732528042, 0.28472821397756687, 0.3088869715271786, 0.30457290767903367, 0.29680759275237273, 0.2924935289042278, 0.28472821397756687, 0.29335634167385677, 0.28817946505608283, 0.28817946505608283, 0.27782571182053495, 0.272648835202761, 0.27351164797238997, 0.24935289042277825, 0.730802415875755, 0.7998274374460742, 0.909404659188956, 0.9266609145815358, 0.9214840379637619, 0.8515962036238136, 0.7748058671268335, 0.7092320966350302, 0.23986194995685936, 0.23295944779982744, 0.22088006902502158, 0.2191544434857636, 0.2182916307161346, 0.21656600517687663, 0.22346850733390855, 0.2191544434857636, 0.2182916307161346, 0.2191544434857636, 0.22433132010353754, 0.2269197584124245, 0.2286453839516825, 0.22433132010353754, 0.2191544434857636, 0.21484037963761865, 0.21484037963761865, 0.21484037963761865, 0.21397756686798963, 0.9499568593615185, 0.21656600517687663, 0.21397756686798963, 0.21397756686798963, 0.21311475409836064, 0.21484037963761865, 0.21225194132873165, 0.21225194132873165, 0.21138912855910266, 0.21138912855910266, 0.20966350301984468, 0.21138912855910266, 0.21397756686798963, 0.21311475409836064, 0.21570319240724764, 0.21397756686798963, 0.21656600517687663, 0.21397756686798963, 0.21656600517687663, 0.21397756686798963, 0.2088006902502157, 0.20362381363244175, 0.20103537532355478, 0.2001725625539258, 0.1984469370146678, 0.19672131147540983, 0.19758412424503882, 0.19758412424503882, 0.1984469370146678, 0.19758412424503882, 0.1993097497842968, 0.2001725625539258, 0.19327006039689387, 0.19413287316652286, 0.19499568593615185, 0.19672131147540983, 0.19672131147540983, 0.19758412424503882, 0.1984469370146678, 0.19758412424503882, 0.19758412424503882, 0.19672131147540983, 0.19327006039689387, 0.19499568593615185, 0.19413287316652286, 0.19327006039689387, 0.19327006039689387, 0.19240724762726488, 0.19413287316652286, 0.19672131147540983, 0.1993097497842968, 0.1984469370146678, 0.22950819672131148, 0.28904227782571185, 0.2804141501294219, 0.2070750647109577, 0.1993097497842968, 0.1915444348576359, 0.19327006039689387, 0.1915444348576359, 0.19413287316652286, 0.1984469370146678, 0.7842968075927523, 0.8973252804141502, 0.7092320966350302, 0.1984469370146678, 0.1984469370146678, 0.19413287316652286, 0.1906816220880069, 0.1906816220880069, 0.18809318377911993, 0.18723037100949094, 0.18636755823986195, 0.18636755823986195, 0.18723037100949094, 0.18723037100949094, 0.18550474547023296, 0.18636755823986195, 0.18809318377911993, 0.18809318377911993, 0.1898188093183779, 0.18809318377911993, 0.18809318377911993, 0.18809318377911993, 0.1906816220880069, 0.1915444348576359, 0.19327006039689387, 0.19240724762726488, 0.19413287316652286, 0.19672131147540983, 0.1993097497842968, 0.19758412424503882, 0.20189818809318377, 0.20448662640207074, 0.6264020707506471, 0.7100949094046591, 0.8093183779119931, 0.8541846419327006, 0.90595340811044, 0.9180327868852459, 0.9387402933563417, 0.9430543572044866, 0.9439171699741156, 0.9404659188955996, 0.9309749784296808, 0.917169974115617, 0.8878343399482312, 0.816220880069025, 0.7359792924935289, 0.6824849007765315, 0.6272648835202761, 0.6022433132010354, 0.451251078515962, 0.24331320103537532, 0.21570319240724764, 0.19672131147540983, 0.1906816220880069, 0.18636755823986195, 0.18550474547023296, 0.18464193270060397, 0.18464193270060397, 0.18464193270060397, 0.182916307161346, 0.18377911993097498, 0.18464193270060397, 0.18550474547023296, 0.18550474547023296, 0.18550474547023296, 0.18464193270060397, 0.18377911993097498, 0.18723037100949094, 0.18723037100949094, 0.18636755823986195, 0.18809318377911993, 0.1898188093183779, 0.9482312338222606, 0.7661777394305436, 0.6445211389128559, 0.5470232959447799, 0.47368421052631576, 0.4443485763589301, 0.4081104400345125, 0.35030198446937016, 0.27523727351164795, 0.2355478861087144, 0.2269197584124245, 0.2286453839516825, 0.22950819672131148, 0.23899913718723037, 0.6056945642795514, 0.9499568593615185, 0.7739430543572045, 0.3882657463330457, 0.28472821397756687, 0.24331320103537532, 0.2191544434857636, 0.21397756686798963, 0.21311475409836064, 0.21397756686798963, 0.20276100086281276, 0.20189818809318377, 0.2001725625539258, 0.20189818809318377, 0.1993097497842968, 0.1984469370146678, 0.1984469370146678, 0.19585849870578084, 0.19672131147540983, 0.19758412424503882, 0.19672131147540983, 0.1993097497842968, 0.20189818809318377, 0.2088006902502157, 0.2088006902502157, 0.2070750647109577, 0.2070750647109577, 0.2614322691975841, 0.22433132010353754, 0.21484037963761865, 0.21225194132873165, 0.22088006902502158, 0.21742881794650562, 0.23037100949094047, 0.2277825711820535, 0.22346850733390855, 0.22433132010353754, 0.2269197584124245, 0.2277825711820535, 0.2286453839516825, 0.2269197584124245, 0.2277825711820535, 0.23382226056945643, 0.24331320103537532, 0.27610008628127697, 0.3839516824849008, 0.544434857635893, 0.6436583261432269, 0.6928386540120793, 0.7359792924935289, 0.7842968075927523, 0.8610871440897325, 0.902502157031924, 0.9482312338222606, 0.9499568593615185, 0.9421915444348576, 0.8886971527178602, 0.8438308886971527, 0.7610008628127696, 0.7144089732528042, 0.6609145815358067, 0.5944779982743744, 0.48662640207075064, 0.36065573770491804, 0.3511647972389991, 0.31061259706643657, 0.26833477135461603, 0.22605694564279552, 0.22519413287316653, 0.22433132010353754, 0.22433132010353754, 0.2269197584124245, 0.22433132010353754, 0.22519413287316653, 0.23209663503019845, 0.2372735116479724, 0.2372735116479724, 0.23899913718723037, 0.24072476272648835, 0.24331320103537532, 0.24245038826574633, 0.24072476272648835, 0.25194132873166525, 0.364106988783434, 0.6091458153580673, 0.6609145815358067, 0.7204486626402071, 0.7618636755823986, 0.8308886971527178, 0.8498705780845557, 0.8938740293356342, 0.9344262295081968, 0.9482312338222606, 0.9404659188955996, 0.9007765314926661, 0.8584987057808455, 0.8403796376186368, 0.808455565142364, 0.7471958584987057, 0.6842105263157895, 0.6298533218291631, 0.6022433132010354, 0.44089732528041414, 0.4253666954270923, 0.3244176013805004, 0.29335634167385677, 0.274374460742019, 0.2657463330457291, 0.25107851596203623, 0.24331320103537532, 0.24158757549611734, 0.24331320103537532, 0.24762726488352027, 0.24158757549611734, 0.24072476272648835, 0.24158757549611734, 0.24245038826574633, 0.2441760138050043, 0.24158757549611734, 0.24331320103537532, 0.2441760138050043, 0.24158757549611734, 0.24245038826574633, 0.24158757549611734, 0.24158757549611734, 0.24158757549611734, 0.4158757549611734, 0.9068162208800691, 0.9439171699741156, 0.9473684210526315, 0.9275237273511648, 0.825711820534944, 0.3382226056945643, 0.33477135461604834, 0.3080241587575496, 0.30457290767903367, 0.3002588438308887, 0.3097497842968076, 0.30371009490940465, 0.9456427955133736, 0.9154443485763589, 0.2942191544434858, 0.2916307161345988, 0.28731665228645387, 0.28386540120793785, 0.26056945642795515, 0.26229508196721313, 0.2614322691975841, 0.2528041415012942, 0.2545297670405522, 0.2450388265746333, 0.24676445211389128, 0.5383951682484901, 0.4831751509922347, 0.45038826574633306, 0.905090595340811, 0.6583261432269197, 0.27782571182053495, 0.26056945642795515, 0.2459016393442623, 0.24158757549611734, 0.23986194995685936, 0.25194132873166525, 0.25884383088869717, 0.24331320103537532, 0.24331320103537532, 0.24331320103537532, 0.24245038826574633, 0.24245038826574633, 0.24331320103537532, 0.24762726488352027, 0.28731665228645387, 0.2459016393442623, 0.2459016393442623, 0.2450388265746333, 0.2459016393442623, 0.2441760138050043, 0.2450388265746333, 0.2441760138050043, 0.24676445211389128, 0.25625539257981017, 0.6893874029335634, 0.7704918032786885, 0.9447799827437446, 0.825711820534944, 0.7575496117342536, 0.6652286453839517, 0.5884383088869716, 0.25884383088869717, 0.24849007765314926, 0.2441760138050043, 0.2450388265746333, 0.2441760138050043, 0.2441760138050043, 0.2441760138050043, 0.2459016393442623, 0.24331320103537532, 0.24331320103537532, 0.24331320103537532, 0.24331320103537532, 0.2441760138050043, 0.2459016393442623, 0.9335634167385677, 0.8904227782571182, 0.2545297670405522, 0.2631578947368421, 0.27955133735979293, 0.29680759275237273, 0.28904227782571185, 0.29767040552200175, 0.2985332182916307, 0.2993960310612597, 0.3011216566005177, 0.30371009490940465, 0.30457290767903367, 0.30371009490940465, 0.31492666091458155, 0.32182916307161347, 0.31492666091458155, 0.29335634167385677, 0.2812769628990509, 0.27696289905090593, 0.2786885245901639, 0.639344262295082, 0.6048317515099223, 0.8032786885245902, 0.899913718723037, 0.8153580672993961, 0.7713546160483176, 0.27696289905090593, 0.2450388265746333, 0.2364106988783434, 0.2372735116479724, 0.2372735116479724, 0.2372735116479724, 0.23899913718723037, 0.2372735116479724, 0.2372735116479724, 0.24331320103537532, 0.23813632441760138, 0.2528041415012942, 0.23813632441760138, 0.24245038826574633, 0.24158757549611734, 0.24331320103537532, 0.23986194995685936, 0.24072476272648835, 0.24072476272648835, 0.24331320103537532, 0.2441760138050043, 0.24676445211389128, 0.8490077653149266, 0.6298533218291631, 0.8723037100949094, 0.8740293356341674, 0.8740293356341674, 0.8783433994823123, 0.8826574633304572, 0.8878343399482312, 0.8904227782571182, 0.8938740293356342, 0.8990509059534081, 0.9042277825711821, 0.909404659188956, 0.9327006039689387, 0.9188955996548749, 0.907679033649698, 0.9016393442622951, 0.8955996548748921, 0.8930112165660051, 0.8895599654874892, 0.8861087144089732, 0.8817946505608283, 0.8766177739430544, 0.8740293356341674, 0.8731665228645384, 0.8723037100949094, 0.3175150992234685, 0.28731665228645387, 0.28559102674719583, 0.27782571182053495, 0.28213977566867987, 0.28213977566867987, 0.3028472821397757, 0.29335634167385677, 0.274374460742019, 0.27092320966350303, 0.2657463330457291, 0.26833477135461603, 0.27092320966350303, 0.8955996548748921, 0.8990509059534081, 0.8990509059534081, 0.8947368421052632, 0.270060396893874, 0.27092320966350303, 0.271786022433132, 0.271786022433132, 0.272648835202761, 0.27351164797238997, 0.27351164797238997, 0.27610008628127697, 0.27955133735979293, 0.29508196721311475, 0.3373597929249353, 0.3744607420189819, 0.44176013805004316, 0.5366695427092321, 0.642795513373598, 0.7126833477135461, 0.7756686798964625, 0.8584987057808455, 0.902502157031924, 0.9206212251941329, 0.9387402933563417], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/GF_recep_IV.gap.json b/pfam_gap_rates/GF_recep_IV.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..15382f1c8edfdd2284abeec729e3c742d3178683
--- /dev/null
+++ b/pfam_gap_rates/GF_recep_IV.gap.json
@@ -0,0 +1 @@
+{"family": "GF_recep_IV", "n_seqs": 327, "length": 153, "gap_rates": [0.636085626911315, 0.21100917431192662, 0.21100917431192662, 0.20795107033639143, 0.19877675840978593, 0.19877675840978593, 0.2018348623853211, 0.327217125382263, 0.3486238532110092, 0.12844036697247707, 0.0764525993883792, 0.0764525993883792, 0.07339449541284404, 0.07339449541284404, 0.07033639143730887, 0.0672782874617737, 0.0672782874617737, 0.06422018348623854, 0.06422018348623854, 0.06116207951070336, 0.05504587155963303, 0.04892966360856269, 0.04892966360856269, 0.04892966360856269, 0.9174311926605505, 0.9113149847094801, 0.04892966360856269, 0.04281345565749235, 0.03669724770642202, 0.03669724770642202, 0.7828746177370031, 0.8073394495412844, 0.8348623853211009, 0.7981651376146789, 0.7828746177370031, 0.039755351681957186, 0.03669724770642202, 0.03669724770642202, 0.03363914373088685, 0.03363914373088685, 0.03363914373088685, 0.03058103975535168, 0.03058103975535168, 0.22629969418960244, 0.2874617737003058, 0.382262996941896, 0.39143730886850153, 0.3669724770642202, 0.19877675840978593, 0.13149847094801223, 0.1345565749235474, 0.1345565749235474, 0.13761467889908258, 0.12538226299694188, 0.7247706422018348, 0.11009174311926606, 0.0672782874617737, 0.04281345565749235, 0.03058103975535168, 0.03058103975535168, 0.03058103975535168, 0.03058103975535168, 0.03058103975535168, 0.03058103975535168, 0.03058103975535168, 0.03363914373088685, 0.7308868501529052, 0.7828746177370031, 0.764525993883792, 0.7492354740061162, 0.7308868501529052, 0.5718654434250765, 0.9235474006116208, 0.03363914373088685, 0.03058103975535168, 0.03058103975535168, 0.027522935779816515, 0.027522935779816515, 0.03363914373088685, 0.03669724770642202, 0.03669724770642202, 0.03669724770642202, 0.03669724770642202, 0.039755351681957186, 0.039755351681957186, 0.03669724770642202, 0.039755351681957186, 0.04281345565749235, 0.9480122324159022, 0.944954128440367, 0.04281345565749235, 0.9296636085626911, 0.9235474006116208, 0.04281345565749235, 0.04281345565749235, 0.6055045871559633, 0.72782874617737, 0.9388379204892966, 0.944954128440367, 0.9204892966360856, 0.7064220183486238, 0.5871559633027523, 0.045871559633027525, 0.04892966360856269, 0.04892966360856269, 0.05198776758409786, 0.04892966360856269, 0.05198776758409786, 0.05504587155963303, 0.04892966360856269, 0.04892966360856269, 0.04892966360856269, 0.05198776758409786, 0.06116207951070336, 0.3119266055045872, 0.4954128440366973, 0.6850152905198776, 0.7064220183486238, 0.7247706422018348, 0.7247706422018348, 0.8623853211009175, 0.7339449541284404, 0.7064220183486238, 0.6116207951070336, 0.3180428134556575, 0.1926605504587156, 0.16819571865443425, 0.1712538226299694, 0.27217125382262997, 0.15902140672782875, 0.15902140672782875, 0.15902140672782875, 0.15902140672782875, 0.1651376146788991, 0.16819571865443425, 0.16819571865443425, 0.16819571865443425, 0.1743119266055046, 0.17737003058103976, 0.18042813455657492, 0.944954128440367, 0.4740061162079511, 0.22018348623853212, 0.2415902140672783, 0.23547400611620795, 0.2691131498470948, 0.3333333333333333, 0.42201834862385323, 0.46788990825688076, 0.5076452599388379, 0.5718654434250765, 0.6024464831804281, 0.6483180428134556], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/GGDEF.gap.json b/pfam_gap_rates/GGDEF.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..daa7a9317338f4177f9e5e06f1c3a1f03821f63e
--- /dev/null
+++ b/pfam_gap_rates/GGDEF.gap.json
@@ -0,0 +1 @@
+{"family": "GGDEF", "n_seqs": 5000, "length": 163, "gap_rates": [0.465, 0.1956, 0.0884, 0.0748, 0.0594, 0.0556, 0.0528, 0.051, 0.05, 0.0494, 0.0484, 0.047, 0.0464, 0.045, 0.0422, 0.042, 0.0416, 0.0408, 0.0412, 0.041, 0.0436, 0.0464, 0.0458, 0.0472, 0.0496, 0.0566, 0.93, 0.181, 0.243, 0.3296, 0.181, 0.0776, 0.049, 0.0348, 0.0256, 0.022, 0.02, 0.0186, 0.0184, 0.0188, 0.0188, 0.0188, 0.0198, 0.0204, 0.02, 0.0198, 0.0192, 0.0188, 0.0184, 0.0196, 0.0204, 0.0208, 0.0196, 0.018, 0.0172, 0.0176, 0.017, 0.0168, 0.0166, 0.0164, 0.016, 0.0156, 0.0158, 0.0156, 0.0156, 0.016, 0.0152, 0.016, 0.0168, 0.0196, 0.0218, 0.0236, 0.0256, 0.8588, 0.0236, 0.02, 0.0204, 0.0166, 0.015, 0.0154, 0.0152, 0.015, 0.016, 0.017, 0.0176, 0.0176, 0.0176, 0.0176, 0.018, 0.0266, 0.0204, 0.021, 0.0224, 0.0226, 0.0912, 0.2458, 0.4788, 0.3772, 0.1254, 0.05, 0.0446, 0.0396, 0.0354, 0.0328, 0.0312, 0.0334, 0.034, 0.0364, 0.038, 0.04, 0.0426, 0.047, 0.052, 0.0532, 0.1038, 0.1882, 0.176, 0.2292, 0.19, 0.191, 0.1464, 0.1028, 0.147, 0.1134, 0.057, 0.0538, 0.0516, 0.0516, 0.0518, 0.0524, 0.0528, 0.0528, 0.0532, 0.0542, 0.5364, 0.3798, 0.2398, 0.086, 0.0686, 0.0652, 0.0656, 0.0686, 0.0638, 0.063, 0.0628, 0.0636, 0.0652, 0.0664, 0.0668, 0.0684, 0.0708, 0.072, 0.0746, 0.0792, 0.0832, 0.087, 0.0928, 0.1082, 0.132, 0.1784, 0.2432, 0.3402, 0.6052], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/GIIM.gap.json b/pfam_gap_rates/GIIM.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..8a52daa82461115e9b19097ae3a04ff93e81ea51
--- /dev/null
+++ b/pfam_gap_rates/GIIM.gap.json
@@ -0,0 +1 @@
+{"family": "GIIM", "n_seqs": 1278, "length": 81, "gap_rates": [0.63302034428795, 0.2777777777777778, 0.15884194053208137, 0.11424100156494522, 0.10406885758998435, 0.07902973395931143, 0.06651017214397496, 0.0594679186228482, 0.046948356807511735, 0.04538341158059468, 0.04381846635367762, 0.04303599374021909, 0.5219092331768388, 0.04303599374021909, 0.04538341158059468, 0.3427230046948357, 0.050078247261345854, 0.03834115805946792, 0.03442879499217527, 0.03286384976525822, 0.0297339593114241, 0.025821596244131457, 0.024256651017214397, 0.02190923317683881, 0.02034428794992175, 0.018779342723004695, 0.017214397496087636, 0.01643192488262911, 0.01564945226917058, 0.013302034428794992, 0.011737089201877934, 0.008607198748043818, 0.008607198748043818, 0.007042253521126761, 0.006259780907668232, 0.010954616588419406, 0.009389671361502348, 0.009389671361502348, 0.011737089201877934, 0.011737089201877934, 0.012519561815336464, 0.01564945226917058, 0.019561815336463225, 0.017996870109546165, 0.01564945226917058, 0.02034428794992175, 0.023474178403755867, 0.03755868544600939, 0.03442879499217527, 0.026604068857589983, 0.027386541471048513, 0.11502347417840375, 0.035211267605633804, 0.03286384976525822, 0.03286384976525822, 0.03286384976525822, 0.035211267605633804, 0.036776212832550864, 0.03834115805946792, 0.03990610328638498, 0.03912363067292645, 0.04381846635367762, 0.048513302034428794, 0.051643192488262914, 0.05242566510172144, 0.053208137715179966, 0.05555555555555555, 0.0594679186228482, 0.06729264475743349, 0.16901408450704225, 0.18935837245696402, 0.7386541471048513, 0.24256651017214398, 0.28012519561815336, 0.325508607198748, 0.42801251956181535, 0.4835680751173709, 0.5328638497652582, 0.6118935837245696, 0.7175273865414711, 0.7809076682316118], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/GIT1_C.gap.json b/pfam_gap_rates/GIT1_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..6a5d35dad5c9f2ac3c17699d532f249f587bc0f9
--- /dev/null
+++ b/pfam_gap_rates/GIT1_C.gap.json
@@ -0,0 +1 @@
+{"family": "GIT1_C", "n_seqs": 110, "length": 134, "gap_rates": [0.41818181818181815, 0.39090909090909093, 0.35454545454545455, 0.3181818181818182, 0.20909090909090908, 0.19090909090909092, 0.16363636363636364, 0.16363636363636364, 0.14545454545454545, 0.07272727272727272, 0.06363636363636363, 0.06363636363636363, 0.05454545454545454, 0.05454545454545454, 0.05454545454545454, 0.05454545454545454, 0.05454545454545454, 0.05454545454545454, 0.05454545454545454, 0.05454545454545454, 0.05454545454545454, 0.05454545454545454, 0.05454545454545454, 0.05454545454545454, 0.05454545454545454, 0.05454545454545454, 0.9454545454545454, 0.9454545454545454, 0.05454545454545454, 0.7545454545454545, 0.06363636363636363, 0.06363636363636363, 0.05454545454545454, 0.045454545454545456, 0.045454545454545456, 0.05454545454545454, 0.07272727272727272, 0.06363636363636363, 0.06363636363636363, 0.07272727272727272, 0.07272727272727272, 0.08181818181818182, 0.07272727272727272, 0.07272727272727272, 0.07272727272727272, 0.07272727272727272, 0.07272727272727272, 0.07272727272727272, 0.07272727272727272, 0.06363636363636363, 0.06363636363636363, 0.06363636363636363, 0.06363636363636363, 0.06363636363636363, 0.06363636363636363, 0.9454545454545454, 0.9454545454545454, 0.8454545454545455, 0.09090909090909091, 0.09090909090909091, 0.07272727272727272, 0.07272727272727272, 0.06363636363636363, 0.06363636363636363, 0.05454545454545454, 0.05454545454545454, 0.05454545454545454, 0.06363636363636363, 0.1, 0.8818181818181818, 0.8909090909090909, 0.9363636363636364, 0.9363636363636364, 0.9272727272727272, 0.8818181818181818, 0.8818181818181818, 0.09090909090909091, 0.09090909090909091, 0.07272727272727272, 0.05454545454545454, 0.05454545454545454, 0.045454545454545456, 0.05454545454545454, 0.05454545454545454, 0.05454545454545454, 0.05454545454545454, 0.045454545454545456, 0.045454545454545456, 0.045454545454545456, 0.045454545454545456, 0.045454545454545456, 0.045454545454545456, 0.045454545454545456, 0.045454545454545456, 0.045454545454545456, 0.045454545454545456, 0.8727272727272727, 0.9181818181818182, 0.9181818181818182, 0.9, 0.8090909090909091, 0.42727272727272725, 0.3181818181818182, 0.2818181818181818, 0.23636363636363636, 0.23636363636363636, 0.20909090909090908, 0.2, 0.18181818181818182, 0.18181818181818182, 0.19090909090909092, 0.18181818181818182, 0.08181818181818182, 0.045454545454545456, 0.045454545454545456, 0.045454545454545456, 0.045454545454545456, 0.045454545454545456, 0.045454545454545456, 0.045454545454545456, 0.045454545454545456, 0.045454545454545456, 0.045454545454545456, 0.045454545454545456, 0.045454545454545456, 0.045454545454545456, 0.045454545454545456, 0.045454545454545456, 0.045454545454545456, 0.045454545454545456, 0.045454545454545456, 0.07272727272727272, 0.32727272727272727, 0.5727272727272728], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/GLF.gap.json b/pfam_gap_rates/GLF.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..8743ab8eaeb2228e6e3a413a3b44fa6232f9ea0e
--- /dev/null
+++ b/pfam_gap_rates/GLF.gap.json
@@ -0,0 +1 @@
+{"family": "GLF", "n_seqs": 628, "length": 223, "gap_rates": [0.23089171974522293, 0.042993630573248405, 0.03503184713375796, 0.030254777070063694, 0.028662420382165606, 0.027070063694267517, 0.027070063694267517, 0.027070063694267517, 0.025477707006369428, 0.025477707006369428, 0.025477707006369428, 0.025477707006369428, 0.025477707006369428, 0.025477707006369428, 0.027070063694267517, 0.027070063694267517, 0.025477707006369428, 0.025477707006369428, 0.02388535031847134, 0.02388535031847134, 0.02388535031847134, 0.02388535031847134, 0.02388535031847134, 0.02388535031847134, 0.02388535031847134, 0.02388535031847134, 0.02388535031847134, 0.02388535031847134, 0.02388535031847134, 0.02388535031847134, 0.02388535031847134, 0.02388535031847134, 0.02388535031847134, 0.02388535031847134, 0.02388535031847134, 0.02388535031847134, 0.03343949044585987, 0.02388535031847134, 0.02388535031847134, 0.02388535031847134, 0.022292993630573247, 0.022292993630573247, 0.022292993630573247, 0.022292993630573247, 0.022292993630573247, 0.022292993630573247, 0.022292993630573247, 0.022292993630573247, 0.022292993630573247, 0.022292993630573247, 0.022292993630573247, 0.022292993630573247, 0.022292993630573247, 0.02388535031847134, 0.02388535031847134, 0.02388535031847134, 0.02388535031847134, 0.33121019108280253, 0.35828025477707004, 0.050955414012738856, 0.01910828025477707, 0.01910828025477707, 0.01910828025477707, 0.01910828025477707, 0.01910828025477707, 0.020700636942675158, 0.020700636942675158, 0.01910828025477707, 0.01910828025477707, 0.01910828025477707, 0.01751592356687898, 0.01751592356687898, 0.01910828025477707, 0.01910828025477707, 0.01910828025477707, 0.7961783439490446, 0.8805732484076433, 0.9044585987261147, 0.910828025477707, 0.8885350318471338, 0.8057324840764332, 0.7181528662420382, 0.6878980891719745, 0.2929936305732484, 0.16719745222929935, 0.09554140127388536, 0.03980891719745223, 0.03184713375796178, 0.07165605095541401, 0.022292993630573247, 0.020700636942675158, 0.020700636942675158, 0.020700636942675158, 0.020700636942675158, 0.01910828025477707, 0.01910828025477707, 0.01910828025477707, 0.01910828025477707, 0.020700636942675158, 0.020700636942675158, 0.020700636942675158, 0.020700636942675158, 0.020700636942675158, 0.020700636942675158, 0.020700636942675158, 0.020700636942675158, 0.022292993630573247, 0.022292993630573247, 0.022292993630573247, 0.022292993630573247, 0.022292993630573247, 0.022292993630573247, 0.022292993630573247, 0.020700636942675158, 0.020700636942675158, 0.020700636942675158, 0.020700636942675158, 0.020700636942675158, 0.022292993630573247, 0.02388535031847134, 0.08917197452229299, 0.893312101910828, 0.025477707006369428, 0.01910828025477707, 0.01751592356687898, 0.01910828025477707, 0.01910828025477707, 0.01910828025477707, 0.01910828025477707, 0.01751592356687898, 0.01751592356687898, 0.01751592356687898, 0.01751592356687898, 0.01751592356687898, 0.01751592356687898, 0.01751592356687898, 0.01751592356687898, 0.01751592356687898, 0.01751592356687898, 0.2229299363057325, 0.01910828025477707, 0.01910828025477707, 0.01910828025477707, 0.01910828025477707, 0.01910828025477707, 0.01910828025477707, 0.01910828025477707, 0.01751592356687898, 0.01751592356687898, 0.01751592356687898, 0.01751592356687898, 0.01592356687898089, 0.01592356687898089, 0.01592356687898089, 0.6496815286624203, 0.8407643312101911, 0.9426751592356688, 0.8869426751592356, 0.7643312101910829, 0.6385350318471338, 0.01592356687898089, 0.6687898089171974, 0.01751592356687898, 0.01751592356687898, 0.01751592356687898, 0.01751592356687898, 0.01751592356687898, 0.01751592356687898, 0.01751592356687898, 0.01751592356687898, 0.01910828025477707, 0.01910828025477707, 0.01910828025477707, 0.1942675159235669, 0.18949044585987262, 0.03503184713375796, 0.9394904458598726, 0.022292993630573247, 0.01910828025477707, 0.020700636942675158, 0.020700636942675158, 0.18789808917197454, 0.01910828025477707, 0.01910828025477707, 0.01910828025477707, 0.01910828025477707, 0.01751592356687898, 0.01751592356687898, 0.01751592356687898, 0.01751592356687898, 0.01910828025477707, 0.01910828025477707, 0.01592356687898089, 0.01592356687898089, 0.01592356687898089, 0.01592356687898089, 0.01592356687898089, 0.01751592356687898, 0.01751592356687898, 0.01751592356687898, 0.01910828025477707, 0.020700636942675158, 0.020700636942675158, 0.022292993630573247, 0.020700636942675158, 0.04617834394904458, 0.03503184713375796, 0.8821656050955414, 0.89171974522293, 0.8136942675159236, 0.02388535031847134, 0.02388535031847134, 0.02388535031847134, 0.02388535031847134, 0.02388535031847134, 0.02388535031847134, 0.02388535031847134, 0.02388535031847134, 0.02388535031847134, 0.02388535031847134, 0.02388535031847134, 0.02388535031847134, 0.025477707006369428], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/GMC_oxred_C.gap.json b/pfam_gap_rates/GMC_oxred_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..9e7f08b4069e724bc6239a7b9c01a6c6c02f13cc
--- /dev/null
+++ b/pfam_gap_rates/GMC_oxred_C.gap.json
@@ -0,0 +1 @@
+{"family": "GMC_oxred_C", "n_seqs": 5000, "length": 167, "gap_rates": [0.4198, 0.3328, 0.2542, 0.2318, 0.215, 0.2096, 0.2054, 0.2024, 0.2024, 0.2004, 0.1988, 0.8948, 0.8436, 0.2276, 0.2206, 0.2058, 0.1934, 0.1888, 0.187, 0.1864, 0.2006, 0.1944, 0.1628, 0.1574, 0.156, 0.1482, 0.1464, 0.1462, 0.1446, 0.1438, 0.1434, 0.927, 0.924, 0.146, 0.1444, 0.1434, 0.142, 0.138, 0.1364, 0.1364, 0.1366, 0.1358, 0.1356, 0.1358, 0.1354, 0.1354, 0.1354, 0.1352, 0.1352, 0.1358, 0.136, 0.136, 0.3136, 0.4866, 0.8398, 0.8782, 0.8892, 0.9004, 0.9148, 0.9264, 0.94, 0.9438, 0.9458, 0.9424, 0.936, 0.9214, 0.9074, 0.895, 0.8844, 0.8662, 0.6388, 0.4846, 0.4854, 0.4318, 0.3858, 0.2898, 0.2416, 0.2224, 0.215, 0.2056, 0.2028, 0.2278, 0.5246, 0.4602, 0.4348, 0.4072, 0.3952, 0.3776, 0.3462, 0.161, 0.1524, 0.151, 0.1554, 0.163, 0.1682, 0.3254, 0.3018, 0.2946, 0.2834, 0.2688, 0.2596, 0.2556, 0.2492, 0.2428, 0.2254, 0.2086, 0.1916, 0.0874, 0.0666, 0.0236, 0.0218, 0.0208, 0.021, 0.021, 0.021, 0.021, 0.0188, 0.0186, 0.128, 0.1154, 0.1148, 0.1116, 0.2084, 0.9406, 0.6764, 0.0168, 0.0162, 0.0166, 0.0166, 0.0164, 0.0152, 0.0154, 0.0162, 0.0162, 0.0192, 0.0184, 0.0186, 0.0192, 0.0202, 0.0212, 0.0216, 0.0224, 0.0234, 0.0246, 0.0252, 0.0262, 0.0264, 0.027, 0.029, 0.0294, 0.0296, 0.037, 0.0318, 0.0332, 0.0342, 0.0352, 0.0354, 0.0368, 0.0378, 0.0394, 0.042, 0.0432, 0.045, 0.0526, 0.0732, 0.1522, 0.4148], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/GMP_PDE_delta.gap.json b/pfam_gap_rates/GMP_PDE_delta.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..7cd9619a2b4d8582d620cd2b672abad6e3d7ff45
--- /dev/null
+++ b/pfam_gap_rates/GMP_PDE_delta.gap.json
@@ -0,0 +1 @@
+{"family": "GMP_PDE_delta", "n_seqs": 269, "length": 166, "gap_rates": [0.6245353159851301, 0.27137546468401486, 0.26022304832713755, 0.2527881040892193, 0.241635687732342, 0.2379182156133829, 0.21189591078066913, 0.21189591078066913, 0.20817843866171004, 0.17843866171003717, 0.17843866171003717, 0.11895910780669144, 0.11895910780669144, 0.11524163568773234, 0.11524163568773234, 0.11524163568773234, 0.11152416356877323, 0.11152416356877323, 0.10780669144981413, 0.10780669144981413, 0.10780669144981413, 0.10780669144981413, 0.10780669144981413, 0.10780669144981413, 0.10408921933085502, 0.10408921933085502, 0.10408921933085502, 0.10037174721189591, 0.10037174721189591, 0.09665427509293681, 0.10037174721189591, 0.10037174721189591, 0.10408921933085502, 0.10780669144981413, 0.7174721189591078, 0.8550185873605948, 0.9033457249070632, 0.929368029739777, 0.929368029739777, 0.895910780669145, 0.7806691449814126, 0.6988847583643123, 0.5650557620817844, 0.5204460966542751, 0.5130111524163569, 0.4646840148698885, 0.45353159851301117, 0.44981412639405205, 0.44981412639405205, 0.43866171003717475, 0.43866171003717475, 0.4349442379182156, 0.43866171003717475, 0.4312267657992565, 0.3903345724907063, 0.10037174721189591, 0.08921933085501858, 0.08921933085501858, 0.08921933085501858, 0.08921933085501858, 0.08178438661710037, 0.08178438661710037, 0.08178438661710037, 0.08178438661710037, 0.08178438661710037, 0.08178438661710037, 0.07806691449814127, 0.07806691449814127, 0.07806691449814127, 0.07806691449814127, 0.07806691449814127, 0.07806691449814127, 0.07434944237918216, 0.07434944237918216, 0.07434944237918216, 0.07806691449814127, 0.07806691449814127, 0.08178438661710037, 0.08178438661710037, 0.4423791821561338, 0.9442379182156134, 0.07806691449814127, 0.07434944237918216, 0.07434944237918216, 0.07434944237918216, 0.07434944237918216, 0.07434944237918216, 0.07434944237918216, 0.07434944237918216, 0.07434944237918216, 0.06319702602230483, 0.06319702602230483, 0.055762081784386616, 0.055762081784386616, 0.055762081784386616, 0.055762081784386616, 0.055762081784386616, 0.05947955390334572, 0.055762081784386616, 0.055762081784386616, 0.055762081784386616, 0.055762081784386616, 0.05947955390334572, 0.05204460966542751, 0.05204460966542751, 0.048327137546468404, 0.048327137546468404, 0.048327137546468404, 0.048327137546468404, 0.048327137546468404, 0.05204460966542751, 0.05204460966542751, 0.05204460966542751, 0.05204460966542751, 0.05204460966542751, 0.05204460966542751, 0.05204460966542751, 0.05204460966542751, 0.05204460966542751, 0.05204460966542751, 0.05204460966542751, 0.05204460966542751, 0.05204460966542751, 0.05204460966542751, 0.05204460966542751, 0.05947955390334572, 0.06319702602230483, 0.06691449814126393, 0.07434944237918216, 0.07434944237918216, 0.42379182156133827, 0.08550185873605948, 0.07063197026022305, 0.07806691449814127, 0.07806691449814127, 0.07806691449814127, 0.07434944237918216, 0.07806691449814127, 0.08550185873605948, 0.09665427509293681, 0.09665427509293681, 0.10408921933085502, 0.10408921933085502, 0.10408921933085502, 0.10408921933085502, 0.10780669144981413, 0.10780669144981413, 0.10780669144981413, 0.10780669144981413, 0.10780669144981413, 0.10780669144981413, 0.44609665427509293, 0.10780669144981413, 0.10780669144981413, 0.10780669144981413, 0.10780669144981413, 0.10780669144981413, 0.11152416356877323, 0.11152416356877323, 0.11895910780669144, 0.11895910780669144, 0.12267657992565056, 0.12267657992565056, 0.12639405204460966, 0.13011152416356878, 0.13011152416356878], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/GMP_synt_C.gap.json b/pfam_gap_rates/GMP_synt_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ebc7a922f60128160d4b876835aaf2452ea0e1e3
--- /dev/null
+++ b/pfam_gap_rates/GMP_synt_C.gap.json
@@ -0,0 +1 @@
+{"family": "GMP_synt_C", "n_seqs": 2405, "length": 93, "gap_rates": [0.38212058212058214, 0.2440748440748441, 0.18295218295218296, 0.16923076923076924, 0.1521829521829522, 0.13347193347193348, 0.10810810810810811, 0.10353430353430354, 0.09604989604989606, 0.08814968814968815, 0.07692307692307693, 0.0681912681912682, 0.05488565488565489, 0.051143451143451146, 0.045322245322245325, 0.03866943866943867, 0.03492723492723493, 0.032432432432432434, 0.03076923076923077, 0.03076923076923077, 0.03076923076923077, 0.8964656964656965, 0.04490644490644491, 0.04074844074844075, 0.03700623700623701, 0.035343035343035345, 0.035343035343035345, 0.038253638253638256, 0.03492723492723493, 0.035343035343035345, 0.03659043659043659, 0.03866943866943867, 0.03700623700623701, 0.03492723492723493, 0.03076923076923077, 0.021205821205821207, 0.012058212058212059, 0.007484407484407485, 0.005405405405405406, 0.005405405405405406, 0.00498960498960499, 0.018295218295218296, 0.02286902286902287, 0.024532224532224534, 0.024116424116424118, 0.021205821205821207, 0.020374220374220375, 0.021205821205821207, 0.02286902286902287, 0.028690228690228692, 0.017463617463617465, 0.01496881496881497, 0.013721413721413722, 0.012058212058212059, 0.010395010395010396, 0.012474012474012475, 0.018295218295218296, 0.01496881496881497, 0.008731808731808732, 0.007484407484407485, 0.007068607068607069, 0.006237006237006237, 0.0058212058212058215, 0.0058212058212058215, 0.006652806652806653, 0.007068607068607069, 0.0079002079002079, 0.010395010395010396, 0.012474012474012475, 0.026195426195426197, 0.02079002079002079, 0.00997920997920998, 0.011642411642411643, 0.009563409563409564, 0.011226611226611227, 0.010810810810810811, 0.011642411642411643, 0.012058212058212059, 0.012474012474012475, 0.011226611226611227, 0.012058212058212059, 0.024116424116424118, 0.028274428274428276, 0.0316008316008316, 0.033264033264033266, 0.03492723492723493, 0.035343035343035345, 0.037422037422037424, 0.03866943866943867, 0.042411642411642414, 0.043243243243243246, 0.04449064449064449, 0.08731808731808732], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/GNAT_acetyltran.gap.json b/pfam_gap_rates/GNAT_acetyltran.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..69a13300fec0dd5b63e0010440e0c9a0787a03e1
--- /dev/null
+++ b/pfam_gap_rates/GNAT_acetyltran.gap.json
@@ -0,0 +1 @@
+{"family": "GNAT_acetyltran", "n_seqs": 266, "length": 266, "gap_rates": [0.793233082706767, 0.7368421052631579, 0.7255639097744361, 0.7105263157894737, 0.706766917293233, 0.6804511278195489, 0.6654135338345865, 0.6165413533834586, 0.575187969924812, 0.5676691729323309, 0.5639097744360902, 0.5488721804511278, 0.5375939849624061, 0.5300751879699248, 0.5300751879699248, 0.5300751879699248, 0.5300751879699248, 0.5263157894736842, 0.5263157894736842, 0.8533834586466166, 0.7669172932330827, 0.5150375939849624, 0.5150375939849624, 0.5150375939849624, 0.5112781954887218, 0.5150375939849624, 0.5150375939849624, 0.5150375939849624, 0.5375939849624061, 0.5225563909774437, 0.5526315789473685, 0.5413533834586466, 0.518796992481203, 0.5112781954887218, 0.5112781954887218, 0.5112781954887218, 0.5112781954887218, 0.5112781954887218, 0.5112781954887218, 0.5075187969924813, 0.8872180451127819, 0.9285714285714286, 0.7819548872180451, 0.5112781954887218, 0.5112781954887218, 0.5150375939849624, 0.5112781954887218, 0.5714285714285714, 0.5112781954887218, 0.5112781954887218, 0.5075187969924813, 0.8082706766917294, 0.5075187969924813, 0.5075187969924813, 0.7030075187969925, 0.6954887218045113, 0.6804511278195489, 0.6766917293233082, 0.5037593984962406, 0.5037593984962406, 0.5037593984962406, 0.5, 0.8270676691729323, 0.8571428571428571, 0.8796992481203008, 0.8834586466165414, 0.8646616541353384, 0.8458646616541353, 0.8007518796992481, 0.6090225563909775, 0.6090225563909775, 0.5939849624060151, 0.5864661654135338, 0.5827067669172933, 0.5714285714285714, 0.518796992481203, 0.5112781954887218, 0.5, 0.49624060150375937, 0.5, 0.5, 0.48872180451127817, 0.4849624060150376, 0.4849624060150376, 0.4849624060150376, 0.48872180451127817, 0.4849624060150376, 0.48120300751879697, 0.48120300751879697, 0.48120300751879697, 0.4774436090225564, 0.48120300751879697, 0.4774436090225564, 0.47368421052631576, 0.47368421052631576, 0.48872180451127817, 0.48120300751879697, 0.5037593984962406, 0.5300751879699248, 0.47368421052631576, 0.45864661654135336, 0.4548872180451128, 0.4548872180451128, 0.45864661654135336, 0.4699248120300752, 0.462406015037594, 0.4548872180451128, 0.45864661654135336, 0.45112781954887216, 0.4473684210526316, 0.46616541353383456, 0.462406015037594, 0.4774436090225564, 0.5263157894736842, 0.8984962406015038, 0.5037593984962406, 0.48120300751879697, 0.4774436090225564, 0.48120300751879697, 0.4849624060150376, 0.4849624060150376, 0.6616541353383458, 0.6127819548872181, 0.5902255639097744, 0.5375939849624061, 0.5, 0.4774436090225564, 0.4398496240601504, 0.40977443609022557, 0.39473684210526316, 0.37218045112781956, 0.3684210526315789, 0.37218045112781956, 0.36466165413533835, 0.3533834586466165, 0.34962406015037595, 0.35714285714285715, 0.35714285714285715, 0.3533834586466165, 0.34962406015037595, 0.34962406015037595, 0.3458646616541353, 0.34962406015037595, 0.34962406015037595, 0.3458646616541353, 0.34210526315789475, 0.45112781954887216, 0.41353383458646614, 0.39097744360902253, 0.9398496240601504, 0.39097744360902253, 0.38721804511278196, 0.3533834586466165, 0.35714285714285715, 0.35714285714285715, 0.3533834586466165, 0.35714285714285715, 0.8909774436090225, 0.9285714285714286, 0.9398496240601504, 0.9022556390977443, 0.8270676691729323, 0.3308270676691729, 0.3233082706766917, 0.31954887218045114, 0.3157894736842105, 0.29699248120300753, 0.2857142857142857, 0.2932330827067669, 0.2857142857142857, 0.31203007518796994, 0.3157894736842105, 0.3082706766917293, 0.2857142857142857, 0.2781954887218045, 0.23684210526315788, 0.2556390977443609, 0.2518796992481203, 0.16165413533834586, 0.13157894736842105, 0.09774436090225563, 0.08270676691729323, 0.07518796992481203, 0.07142857142857142, 0.9360902255639098, 0.06015037593984962, 0.06015037593984962, 0.06015037593984962, 0.05639097744360902, 0.05639097744360902, 0.05639097744360902, 0.05639097744360902, 0.05639097744360902, 0.05639097744360902, 0.06390977443609022, 0.06015037593984962, 0.8721804511278195, 0.05263157894736842, 0.045112781954887216, 0.03759398496240601, 0.03759398496240601, 0.03759398496240601, 0.02631578947368421, 0.022556390977443608, 0.018796992481203006, 0.018796992481203006, 0.018796992481203006, 0.018796992481203006, 0.015037593984962405, 0.015037593984962405, 0.018796992481203006, 0.018796992481203006, 0.018796992481203006, 0.018796992481203006, 0.018796992481203006, 0.018796992481203006, 0.015037593984962405, 0.015037593984962405, 0.015037593984962405, 0.011278195488721804, 0.011278195488721804, 0.011278195488721804, 0.011278195488721804, 0.011278195488721804, 0.011278195488721804, 0.011278195488721804, 0.011278195488721804, 0.011278195488721804, 0.011278195488721804, 0.015037593984962405, 0.011278195488721804, 0.011278195488721804, 0.011278195488721804, 0.011278195488721804, 0.015037593984962405, 0.011278195488721804, 0.018796992481203006, 0.018796992481203006, 0.015037593984962405, 0.018796992481203006, 0.015037593984962405, 0.015037593984962405, 0.46616541353383456, 0.46616541353383456, 0.015037593984962405, 0.015037593984962405, 0.015037593984962405, 0.015037593984962405, 0.015037593984962405, 0.018796992481203006, 0.018796992481203006, 0.018796992481203006, 0.018796992481203006, 0.015037593984962405, 0.015037593984962405, 0.041353383458646614, 0.05263157894736842, 0.11654135338345864, 0.20676691729323307, 0.2593984962406015, 0.3082706766917293, 0.3233082706766917, 0.3458646616541353, 0.37969924812030076, 0.46616541353383456, 0.575187969924812], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/GNT-I.gap.json b/pfam_gap_rates/GNT-I.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..9cdda4fd0f164cde44969e01c01938332ac6e202
--- /dev/null
+++ b/pfam_gap_rates/GNT-I.gap.json
@@ -0,0 +1 @@
+{"family": "GNT-I", "n_seqs": 338, "length": 456, "gap_rates": [0.893491124260355, 0.878698224852071, 0.8668639053254438, 0.8668639053254438, 0.8668639053254438, 0.863905325443787, 0.8609467455621301, 0.8609467455621301, 0.8609467455621301, 0.8579881656804734, 0.8579881656804734, 0.8520710059171598, 0.8520710059171598, 0.8520710059171598, 0.8520710059171598, 0.8520710059171598, 0.8520710059171598, 0.8520710059171598, 0.849112426035503, 0.849112426035503, 0.8520710059171598, 0.8520710059171598, 0.8520710059171598, 0.8698224852071006, 0.863905325443787, 0.8579881656804734, 0.8520710059171598, 0.8520710059171598, 0.8520710059171598, 0.8461538461538461, 0.8402366863905325, 0.8372781065088757, 0.8372781065088757, 0.834319526627219, 0.834319526627219, 0.8313609467455622, 0.834319526627219, 0.8402366863905325, 0.8284023668639053, 0.8224852071005917, 0.8165680473372781, 0.8136094674556213, 0.8106508875739645, 0.8047337278106509, 0.7958579881656804, 0.7988165680473372, 0.8165680473372781, 0.8076923076923077, 0.7840236686390533, 0.7840236686390533, 0.7840236686390533, 0.7810650887573964, 0.7751479289940828, 0.7751479289940828, 0.7751479289940828, 0.7692307692307693, 0.772189349112426, 0.8698224852071006, 0.772189349112426, 0.7633136094674556, 0.7514792899408284, 0.7396449704142012, 0.7337278106508875, 0.7307692307692307, 0.7307692307692307, 0.7218934911242604, 0.7130177514792899, 0.7130177514792899, 0.7130177514792899, 0.7159763313609467, 0.7130177514792899, 0.7130177514792899, 0.7100591715976331, 0.7159763313609467, 0.7011834319526628, 0.6952662721893491, 0.9378698224852071, 0.6952662721893491, 0.6893491124260355, 0.6745562130177515, 0.6686390532544378, 0.6538461538461539, 0.6479289940828402, 0.6331360946745562, 0.6331360946745562, 0.636094674556213, 0.6242603550295858, 0.6153846153846154, 0.5857988165680473, 0.5710059171597633, 0.5473372781065089, 0.5177514792899408, 0.4940828402366864, 0.42011834319526625, 0.39349112426035504, 0.3905325443786982, 0.3905325443786982, 0.3875739644970414, 0.3875739644970414, 0.3698224852071006, 0.3698224852071006, 0.3698224852071006, 0.3698224852071006, 0.3698224852071006, 0.3698224852071006, 0.3698224852071006, 0.5562130177514792, 0.3668639053254438, 0.3668639053254438, 0.3609467455621302, 0.3609467455621302, 0.3609467455621302, 0.3609467455621302, 0.35798816568047337, 0.35798816568047337, 0.35502958579881655, 0.34911242603550297, 0.3431952662721893, 0.35798816568047337, 0.8047337278106509, 0.3431952662721893, 0.34911242603550297, 0.363905325443787, 0.3668639053254438, 0.35798816568047337, 0.34911242603550297, 0.3875739644970414, 0.3343195266272189, 0.33136094674556216, 0.3343195266272189, 0.34023668639053256, 0.32840236686390534, 0.3224852071005917, 0.31952662721893493, 0.31952662721893493, 0.3254437869822485, 0.3254437869822485, 0.3224852071005917, 0.32840236686390534, 0.3343195266272189, 0.33136094674556216, 0.3343195266272189, 0.33727810650887574, 0.3343195266272189, 0.3343195266272189, 0.33727810650887574, 0.5207100591715976, 0.4526627218934911, 0.4319526627218935, 0.35502958579881655, 0.35502958579881655, 0.35798816568047337, 0.33727810650887574, 0.33727810650887574, 0.34023668639053256, 0.39644970414201186, 0.9201183431952663, 0.9023668639053254, 0.40532544378698226, 0.41124260355029585, 0.34023668639053256, 0.33136094674556216, 0.33727810650887574, 0.33727810650887574, 0.3254437869822485, 0.32840236686390534, 0.8195266272189349, 0.3224852071005917, 0.31952662721893493, 0.3816568047337278, 0.5946745562130178, 0.5591715976331361, 0.39644970414201186, 0.3668639053254438, 0.3609467455621302, 0.34911242603550297, 0.33136094674556216, 0.257396449704142, 0.2455621301775148, 0.23964497041420119, 0.23372781065088757, 0.23372781065088757, 0.23372781065088757, 0.23076923076923078, 0.22781065088757396, 0.22781065088757396, 0.22781065088757396, 0.22781065088757396, 0.23372781065088757, 0.22485207100591717, 0.22189349112426035, 0.21893491124260356, 0.21893491124260356, 0.22189349112426035, 0.9378698224852071, 0.20118343195266272, 0.20414201183431951, 0.20710059171597633, 0.19822485207100593, 0.1804733727810651, 0.17751479289940827, 0.17751479289940827, 0.17455621301775148, 0.17159763313609466, 0.17159763313609466, 0.17751479289940827, 0.17159763313609466, 0.17455621301775148, 0.17751479289940827, 0.1804733727810651, 0.1804733727810651, 0.1804733727810651, 0.1834319526627219, 0.1804733727810651, 0.1834319526627219, 0.1834319526627219, 0.1804733727810651, 0.1804733727810651, 0.17159763313609466, 0.17159763313609466, 0.16863905325443787, 0.16863905325443787, 0.17159763313609466, 0.17159763313609466, 0.16568047337278108, 0.17455621301775148, 0.16568047337278108, 0.16863905325443787, 0.17159763313609466, 0.17159763313609466, 0.17159763313609466, 0.17159763313609466, 0.17159763313609466, 0.17455621301775148, 0.17455621301775148, 0.17455621301775148, 0.17455621301775148, 0.17751479289940827, 0.1804733727810651, 0.1804733727810651, 0.19230769230769232, 0.20118343195266272, 0.19822485207100593, 0.1952662721893491, 0.19822485207100593, 0.19230769230769232, 0.19230769230769232, 0.6686390532544378, 0.606508875739645, 0.19230769230769232, 0.1952662721893491, 0.1952662721893491, 0.1952662721893491, 0.1952662721893491, 0.1893491124260355, 0.1893491124260355, 0.19230769230769232, 0.1893491124260355, 0.1952662721893491, 0.1834319526627219, 0.1834319526627219, 0.1893491124260355, 0.1952662721893491, 0.1952662721893491, 0.17751479289940827, 0.17751479289940827, 0.17455621301775148, 0.17455621301775148, 0.17751479289940827, 0.1804733727810651, 0.1804733727810651, 0.9023668639053254, 0.1804733727810651, 0.9201183431952663, 0.1863905325443787, 0.19230769230769232, 0.1893491124260355, 0.19230769230769232, 0.19230769230769232, 0.19822485207100593, 0.19822485207100593, 0.20414201183431951, 0.21597633136094674, 0.8846153846153846, 0.878698224852071, 0.22485207100591717, 0.893491124260355, 0.8757396449704142, 0.23964497041420119, 0.24260355029585798, 0.23964497041420119, 0.24260355029585798, 0.23668639053254437, 0.23964497041420119, 0.23668639053254437, 0.22781065088757396, 0.23668639053254437, 0.23372781065088757, 0.22781065088757396, 0.23076923076923078, 0.22781065088757396, 0.23076923076923078, 0.22781065088757396, 0.22781065088757396, 0.22781065088757396, 0.22781065088757396, 0.22781065088757396, 0.22781065088757396, 0.23668639053254437, 0.23964497041420119, 0.24260355029585798, 0.23964497041420119, 0.8905325443786982, 0.9497041420118343, 0.8579881656804734, 0.2485207100591716, 0.24260355029585798, 0.24260355029585798, 0.2455621301775148, 0.24260355029585798, 0.22485207100591717, 0.22485207100591717, 0.23076923076923078, 0.23076923076923078, 0.9408284023668639, 0.26627218934911245, 0.23668639053254437, 0.25443786982248523, 0.2485207100591716, 0.2514792899408284, 0.2514792899408284, 0.2455621301775148, 0.2514792899408284, 0.2485207100591716, 0.2485207100591716, 0.2485207100591716, 0.2485207100591716, 0.2603550295857988, 0.25443786982248523, 0.25443786982248523, 0.26331360946745563, 0.257396449704142, 0.27514792899408286, 0.29289940828402367, 0.27218934911242604, 0.27514792899408286, 0.27514792899408286, 0.2869822485207101, 0.3047337278106509, 0.3047337278106509, 0.28994082840236685, 0.28106508875739644, 0.27514792899408286, 0.27514792899408286, 0.27514792899408286, 0.27514792899408286, 0.2869822485207101, 0.29289940828402367, 0.2958579881656805, 0.2958579881656805, 0.2958579881656805, 0.2958579881656805, 0.2958579881656805, 0.2988165680473373, 0.2958579881656805, 0.2958579881656805, 0.2958579881656805, 0.2988165680473373, 0.3047337278106509, 0.3047337278106509, 0.3076923076923077, 0.3106508875739645, 0.3076923076923077, 0.3106508875739645, 0.3106508875739645, 0.31952662721893493, 0.33136094674556216, 0.3431952662721893, 0.3520710059171598, 0.3727810650887574, 0.3757396449704142, 0.3875739644970414, 0.41420118343195267, 0.39644970414201186, 0.8609467455621301, 0.8994082840236687, 0.8284023668639053, 0.3905325443786982, 0.3816568047337278, 0.39349112426035504, 0.9201183431952663, 0.3816568047337278, 0.3816568047337278, 0.38461538461538464, 0.3816568047337278, 0.378698224852071, 0.378698224852071, 0.38461538461538464, 0.38461538461538464, 0.3875739644970414, 0.3875739644970414, 0.39349112426035504, 0.39349112426035504, 0.3905325443786982, 0.39349112426035504, 0.39349112426035504, 0.39349112426035504, 0.39349112426035504, 0.39644970414201186, 0.39644970414201186, 0.39644970414201186, 0.39644970414201186, 0.41420118343195267, 0.4171597633136095, 0.42011834319526625, 0.4230769230769231, 0.4230769230769231, 0.4408284023668639, 0.4526627218934911, 0.4526627218934911, 0.45857988165680474, 0.4556213017751479, 0.45857988165680474, 0.45857988165680474, 0.45857988165680474, 0.45857988165680474, 0.45857988165680474, 0.45857988165680474, 0.45857988165680474, 0.46449704142011833, 0.46745562130177515, 0.46745562130177515, 0.46745562130177515, 0.47633136094674555, 0.47633136094674555, 0.9437869822485208, 0.8727810650887574, 0.47633136094674555, 0.47633136094674555, 0.47928994082840237, 0.47928994082840237, 0.4822485207100592, 0.48520710059171596, 0.4940828402366864, 0.5236686390532544, 0.5562130177514792, 0.621301775147929, 0.9408284023668639, 0.6568047337278107, 0.665680473372781, 0.6775147928994083, 0.6952662721893491, 0.6982248520710059, 0.7544378698224852, 0.8017751479289941, 0.8224852071005917], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/GOLD_2.gap.json b/pfam_gap_rates/GOLD_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a6df3d0069d03c36df289ec3e2472f5e31b1d3a3
--- /dev/null
+++ b/pfam_gap_rates/GOLD_2.gap.json
@@ -0,0 +1 @@
+{"family": "GOLD_2", "n_seqs": 142, "length": 164, "gap_rates": [0.2605633802816901, 0.24647887323943662, 0.24647887323943662, 0.24647887323943662, 0.2323943661971831, 0.21830985915492956, 0.18309859154929578, 0.18309859154929578, 0.176056338028169, 0.176056338028169, 0.176056338028169, 0.176056338028169, 0.176056338028169, 0.176056338028169, 0.15492957746478872, 0.14788732394366197, 0.14788732394366197, 0.14788732394366197, 0.14788732394366197, 0.14788732394366197, 0.14788732394366197, 0.14788732394366197, 0.14788732394366197, 0.14788732394366197, 0.14788732394366197, 0.14788732394366197, 0.14788732394366197, 0.14788732394366197, 0.14788732394366197, 0.14788732394366197, 0.14788732394366197, 0.15492957746478872, 0.15492957746478872, 0.15492957746478872, 0.15492957746478872, 0.15492957746478872, 0.15492957746478872, 0.1619718309859155, 0.1619718309859155, 0.1619718309859155, 0.1619718309859155, 0.15492957746478872, 0.15492957746478872, 0.1619718309859155, 0.16901408450704225, 0.176056338028169, 0.18309859154929578, 0.18309859154929578, 0.176056338028169, 0.176056338028169, 0.176056338028169, 0.176056338028169, 0.18309859154929578, 0.19014084507042253, 0.19014084507042253, 0.19014084507042253, 0.19014084507042253, 0.19014084507042253, 0.19014084507042253, 0.19014084507042253, 0.19014084507042253, 0.19014084507042253, 0.19014084507042253, 0.19718309859154928, 0.20422535211267606, 0.8450704225352113, 0.8802816901408451, 0.7676056338028169, 0.5140845070422535, 0.44366197183098594, 0.8169014084507042, 0.8732394366197183, 0.8802816901408451, 0.9014084507042254, 0.9084507042253521, 0.9154929577464789, 0.9295774647887324, 0.9366197183098591, 0.9225352112676056, 0.9084507042253521, 0.9084507042253521, 0.8943661971830986, 0.8802816901408451, 0.8591549295774648, 0.795774647887324, 0.4154929577464789, 0.4084507042253521, 0.38028169014084506, 0.33098591549295775, 0.21830985915492956, 0.20422535211267606, 0.19014084507042253, 0.19014084507042253, 0.19014084507042253, 0.19718309859154928, 0.19718309859154928, 0.23943661971830985, 0.19014084507042253, 0.16901408450704225, 0.8943661971830986, 0.9084507042253521, 0.8732394366197183, 0.16901408450704225, 0.14084507042253522, 0.8028169014084507, 0.823943661971831, 0.8661971830985915, 0.8450704225352113, 0.8098591549295775, 0.7887323943661971, 0.13380281690140844, 0.1267605633802817, 0.1056338028169014, 0.09859154929577464, 0.09859154929577464, 0.09859154929577464, 0.09859154929577464, 0.09859154929577464, 0.09859154929577464, 0.09859154929577464, 0.1056338028169014, 0.1056338028169014, 0.1056338028169014, 0.1056338028169014, 0.09859154929577464, 0.09859154929577464, 0.09859154929577464, 0.09154929577464789, 0.09154929577464789, 0.09859154929577464, 0.09859154929577464, 0.09859154929577464, 0.09859154929577464, 0.09859154929577464, 0.09859154929577464, 0.09859154929577464, 0.09859154929577464, 0.09859154929577464, 0.1056338028169014, 0.1056338028169014, 0.1056338028169014, 0.1056338028169014, 0.1056338028169014, 0.1056338028169014, 0.1056338028169014, 0.1056338028169014, 0.11267605633802817, 0.11267605633802817, 0.11267605633802817, 0.11267605633802817, 0.11267605633802817, 0.11267605633802817, 0.11267605633802817, 0.11267605633802817, 0.11971830985915492, 0.11971830985915492, 0.11971830985915492, 0.1267605633802817, 0.13380281690140844, 0.1619718309859155, 0.16901408450704225, 0.2605633802816901, 0.28169014084507044, 0.352112676056338], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/GST_C.gap.json b/pfam_gap_rates/GST_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..4865fa8aa0d957d4965dcf3bb5fccbf5a1673f50
--- /dev/null
+++ b/pfam_gap_rates/GST_C.gap.json
@@ -0,0 +1 @@
+{"family": "GST_C", "n_seqs": 5000, "length": 109, "gap_rates": [0.9108, 0.8846, 0.8506, 0.8168, 0.796, 0.7764, 0.7498, 0.7274, 0.705, 0.6832, 0.6656, 0.6546, 0.6418, 0.634, 0.6402, 0.8482, 0.9092, 0.9436, 0.9496, 0.935, 0.8668, 0.819, 0.5236, 0.462, 0.4226, 0.4048, 0.4546, 0.334, 0.297, 0.2612, 0.2374, 0.2132, 0.1726, 0.125, 0.0904, 0.0782, 0.0624, 0.047, 0.0354, 0.0264, 0.0178, 0.0142, 0.012, 0.0116, 0.0108, 0.009, 0.008, 0.0058, 0.894, 0.9488, 0.9398, 0.8414, 0.0312, 0.0068, 0.0068, 0.0018, 0.0016, 0.0028, 0.0052, 0.009, 0.0394, 0.0026, 0.001, 0.0008, 0.0008, 0.0008, 0.0008, 0.0008, 0.0036, 0.0056, 0.0044, 0.005, 0.0062, 0.0106, 0.9372, 0.8844, 0.0116, 0.0158, 0.0178, 0.0196, 0.0232, 0.0258, 0.0284, 0.0302, 0.0318, 0.186, 0.8348, 0.8976, 0.9114, 0.8616, 0.686, 0.5382, 0.174, 0.0502, 0.0366, 0.0308, 0.0294, 0.0294, 0.0304, 0.032, 0.0336, 0.0376, 0.0438, 0.0554, 0.0676, 0.1214, 0.1788, 0.248, 0.343], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/GST_N_2.gap.json b/pfam_gap_rates/GST_N_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..78f4349753c9d3809260b8106da9873163d1386f
--- /dev/null
+++ b/pfam_gap_rates/GST_N_2.gap.json
@@ -0,0 +1 @@
+{"family": "GST_N_2", "n_seqs": 1336, "length": 146, "gap_rates": [0.3944610778443114, 0.12574850299401197, 0.08832335329341318, 0.07934131736526946, 0.06437125748502993, 0.058383233532934134, 0.04940119760479042, 0.04116766467065868, 0.02844311377245509, 0.023952095808383235, 0.019461077844311378, 0.017964071856287425, 0.017964071856287425, 0.015718562874251496, 0.014970059880239521, 0.014221556886227544, 0.014221556886227544, 0.01347305389221557, 0.014221556886227544, 0.014221556886227544, 0.014970059880239521, 0.014970059880239521, 0.014970059880239521, 0.8720059880239521, 0.9101796407185628, 0.938622754491018, 0.9498502994011976, 0.9288922155688623, 0.8997005988023952, 0.8630239520958084, 0.019461077844311378, 0.8016467065868264, 0.8854790419161677, 0.8577844311377245, 0.6706586826347305, 0.15718562874251496, 0.12874251497005987, 0.15718562874251496, 0.14221556886227546, 0.0561377245508982, 0.04341317365269461, 0.04640718562874251, 0.07110778443113773, 0.156437125748503, 0.1309880239520958, 0.2125748502994012, 0.08982035928143713, 0.012724550898203593, 0.37649700598802394, 0.3787425149700599, 0.38772455089820357, 0.3907185628742515, 0.39895209580838326, 0.405688622754491, 0.4101796407185629, 0.41691616766467066, 0.42290419161676646, 0.45434131736526945, 0.5179640718562875, 0.5741017964071856, 0.7118263473053892, 0.7904191616766467, 0.8353293413173652, 0.8510479041916168, 0.905688622754491, 0.9348802395209581, 0.874251497005988, 0.8413173652694611, 0.8181137724550899, 0.7709580838323353, 0.6137724550898204, 0.563622754491018, 0.47679640718562877, 0.43637724550898205, 0.4184131736526946, 0.4154191616766467, 0.406437125748503, 0.40119760479041916, 0.3944610778443114, 0.38997005988023953, 0.3809880239520958, 0.3772455089820359, 0.37350299401197606, 0.009730538922155689, 0.019461077844311378, 0.020209580838323353, 0.017964071856287425, 0.019461077844311378, 0.021706586826347306, 0.006736526946107785, 0.9011976047904192, 0.9034431137724551, 0.9101796407185628, 0.9101796407185628, 0.9116766467065869, 0.9131736526946108, 0.9146706586826348, 0.9154191616766467, 0.9176646706586826, 0.9251497005988024, 0.9281437125748503, 0.9318862275449101, 0.9318862275449101, 0.9318862275449101, 0.9258982035928144, 0.9199101796407185, 0.9161676646706587, 0.9146706586826348, 0.9146706586826348, 0.9131736526946108, 0.9109281437125748, 0.9101796407185628, 0.905688622754491, 0.9011976047904192, 0.9011976047904192, 0.006736526946107785, 0.006736526946107785, 0.006736526946107785, 0.008233532934131737, 0.009730538922155689, 0.009730538922155689, 0.011976047904191617, 0.8779940119760479, 0.08682634730538923, 0.7514970059880239, 0.029191616766467067, 0.04416167664670659, 0.012724550898203593, 0.5134730538922155, 0.9341317365269461, 0.2971556886227545, 0.01347305389221557, 0.014221556886227544, 0.015718562874251496, 0.0187125748502994, 0.020958083832335328, 0.02470059880239521, 0.03218562874251497, 0.040419161676646706, 0.048652694610778445, 0.06287425149700598, 0.0718562874251497, 0.07934131736526946, 0.10479041916167664, 0.19910179640718562, 0.8877245508982036], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/GTP-bdg_N.gap.json b/pfam_gap_rates/GTP-bdg_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b801051faaf8e79c02a76069e1bcb7c761c87252
--- /dev/null
+++ b/pfam_gap_rates/GTP-bdg_N.gap.json
@@ -0,0 +1 @@
+{"family": "GTP-bdg_N", "n_seqs": 1893, "length": 91, "gap_rates": [0.7326994189117803, 0.29846804014791334, 0.12836767036450078, 0.07501320655044902, 0.04173269941891178, 0.039619651347068144, 0.039619651347068144, 0.03856312731114633, 0.03856312731114633, 0.035393555203380875, 0.03486529318541997, 0.03486529318541997, 0.03433703116745906, 0.03380876914949815, 0.9461172741679873, 0.03380876914949815, 0.032752245113576335, 0.03169572107765452, 0.027997886951928157, 0.025356576862123614, 0.02377179080824089, 0.022187004754358162, 0.021658742736397254, 0.020073956682514528, 0.017432646592709985, 0.016376122556788168, 0.021130480718436345, 0.03328050713153724, 0.012678288431061807, 0.012150026413100899, 0.01162176439513999, 0.010565240359218173, 0.011093502377179081, 0.010036978341257264, 0.010036978341257264, 0.008980454305335447, 0.008452192287374538, 0.008452192287374538, 0.008452192287374538, 0.008452192287374538, 0.008452192287374538, 0.00792393026941363, 0.00792393026941363, 0.008452192287374538, 0.008452192287374538, 0.008980454305335447, 0.010036978341257264, 0.010565240359218173, 0.012150026413100899, 0.01162176439513999, 0.9498151082937136, 0.01531959852086635, 0.016376122556788168, 0.012150026413100899, 0.008452192287374538, 0.007395668251452721, 0.007395668251452721, 0.006867406233491812, 0.006867406233491812, 0.006339144215530904, 0.006867406233491812, 0.006867406233491812, 0.006339144215530904, 0.006339144215530904, 0.006339144215530904, 0.006867406233491812, 0.005810882197569995, 0.005810882197569995, 0.006339144215530904, 0.005810882197569995, 0.005810882197569995, 0.005810882197569995, 0.006339144215530904, 0.006339144215530904, 0.007395668251452721, 0.008452192287374538, 0.010036978341257264, 0.011093502377179081, 0.012150026413100899, 0.012678288431061807, 0.012678288431061807, 0.013206550449022716, 0.013734812466983624, 0.013734812466983624, 0.014263074484944533, 0.014263074484944533, 0.014263074484944533, 0.014263074484944533, 0.014791336502905442, 0.01901743264659271, 0.294770206022187], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/GTP_CH_N.gap.json b/pfam_gap_rates/GTP_CH_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..2faff5b4247544e27bc942fc62276a7cde5d1ebb
--- /dev/null
+++ b/pfam_gap_rates/GTP_CH_N.gap.json
@@ -0,0 +1 @@
+{"family": "GTP_CH_N", "n_seqs": 203, "length": 209, "gap_rates": [0.7832512315270936, 0.19704433497536947, 0.13793103448275862, 0.12315270935960591, 0.11822660098522167, 0.11822660098522167, 0.11822660098522167, 0.11822660098522167, 0.11822660098522167, 0.12315270935960591, 0.14285714285714285, 0.1477832512315271, 0.1477832512315271, 0.13793103448275862, 0.11330049261083744, 0.10837438423645321, 0.11330049261083744, 0.10837438423645321, 0.10837438423645321, 0.09852216748768473, 0.08866995073891626, 0.08866995073891626, 0.08866995073891626, 0.08374384236453201, 0.08374384236453201, 0.08374384236453201, 0.08374384236453201, 0.08374384236453201, 0.08374384236453201, 0.08374384236453201, 0.08374384236453201, 0.08374384236453201, 0.08374384236453201, 0.08374384236453201, 0.08374384236453201, 0.08374384236453201, 0.4482758620689655, 0.4482758620689655, 0.08374384236453201, 0.08374384236453201, 0.08374384236453201, 0.08374384236453201, 0.08374384236453201, 0.08374384236453201, 0.08866995073891626, 0.09852216748768473, 0.12315270935960591, 0.11822660098522167, 0.10837438423645321, 0.07881773399014778, 0.07389162561576355, 0.07389162561576355, 0.06896551724137931, 0.06896551724137931, 0.06896551724137931, 0.06896551724137931, 0.06896551724137931, 0.06896551724137931, 0.06896551724137931, 0.06896551724137931, 0.06896551724137931, 0.06896551724137931, 0.06896551724137931, 0.06896551724137931, 0.06896551724137931, 0.06896551724137931, 0.06896551724137931, 0.06403940886699508, 0.06403940886699508, 0.06403940886699508, 0.06403940886699508, 0.059113300492610835, 0.059113300492610835, 0.059113300492610835, 0.059113300492610835, 0.059113300492610835, 0.059113300492610835, 0.059113300492610835, 0.059113300492610835, 0.059113300492610835, 0.059113300492610835, 0.059113300492610835, 0.059113300492610835, 0.059113300492610835, 0.06403940886699508, 0.06403940886699508, 0.06403940886699508, 0.06403940886699508, 0.06403940886699508, 0.06896551724137931, 0.06403940886699508, 0.06403940886699508, 0.06896551724137931, 0.059113300492610835, 0.059113300492610835, 0.06403940886699508, 0.06403940886699508, 0.06403940886699508, 0.059113300492610835, 0.059113300492610835, 0.059113300492610835, 0.059113300492610835, 0.059113300492610835, 0.059113300492610835, 0.059113300492610835, 0.06403940886699508, 0.059113300492610835, 0.06403940886699508, 0.06896551724137931, 0.07389162561576355, 0.07389162561576355, 0.07881773399014778, 0.07881773399014778, 0.07881773399014778, 0.07389162561576355, 0.07389162561576355, 0.6699507389162561, 0.06896551724137931, 0.07389162561576355, 0.06403940886699508, 0.06403940886699508, 0.059113300492610835, 0.06403940886699508, 0.06403940886699508, 0.06403940886699508, 0.059113300492610835, 0.06403940886699508, 0.06403940886699508, 0.06403940886699508, 0.06403940886699508, 0.059113300492610835, 0.059113300492610835, 0.054187192118226604, 0.054187192118226604, 0.059113300492610835, 0.059113300492610835, 0.06403940886699508, 0.059113300492610835, 0.06403940886699508, 0.06403940886699508, 0.06403940886699508, 0.06403940886699508, 0.06403940886699508, 0.06403940886699508, 0.059113300492610835, 0.059113300492610835, 0.059113300492610835, 0.04926108374384237, 0.04926108374384237, 0.04926108374384237, 0.04926108374384237, 0.04926108374384237, 0.04926108374384237, 0.04926108374384237, 0.04926108374384237, 0.04926108374384237, 0.8226600985221675, 0.8226600985221675, 0.8275862068965517, 0.8275862068965517, 0.8275862068965517, 0.8374384236453202, 0.8522167487684729, 0.8522167487684729, 0.8522167487684729, 0.8275862068965517, 0.8275862068965517, 0.8275862068965517, 0.8275862068965517, 0.8226600985221675, 0.8226600985221675, 0.4088669950738916, 0.04926108374384237, 0.04926108374384237, 0.04926108374384237, 0.04926108374384237, 0.04926108374384237, 0.04926108374384237, 0.04926108374384237, 0.04926108374384237, 0.054187192118226604, 0.054187192118226604, 0.054187192118226604, 0.04926108374384237, 0.04926108374384237, 0.054187192118226604, 0.054187192118226604, 0.054187192118226604, 0.054187192118226604, 0.054187192118226604, 0.054187192118226604, 0.054187192118226604, 0.054187192118226604, 0.054187192118226604, 0.054187192118226604, 0.054187192118226604, 0.054187192118226604, 0.06403940886699508, 0.06403940886699508, 0.06403940886699508, 0.06403940886699508, 0.06403940886699508, 0.06403940886699508, 0.06403940886699508, 0.06403940886699508, 0.06403940886699508, 0.06403940886699508, 0.06896551724137931, 0.1477832512315271], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/GTP_EFTU.gap.json b/pfam_gap_rates/GTP_EFTU.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..cf6e9ab50cfe250181d934a65660a264b08ffa1e
--- /dev/null
+++ b/pfam_gap_rates/GTP_EFTU.gap.json
@@ -0,0 +1 @@
+{"family": "GTP_EFTU", "n_seqs": 5000, "length": 375, "gap_rates": [0.8014, 0.4266, 0.282, 0.23, 0.1472, 0.0514, 0.0492, 0.0484, 0.0454, 0.0454, 0.0452, 0.044, 0.0436, 0.0424, 0.0422, 0.042, 0.0418, 0.0418, 0.0416, 0.0408, 0.0408, 0.0408, 0.0394, 0.0386, 0.0734, 0.077, 0.0976, 0.103, 0.1184, 0.166, 0.1692, 0.1812, 0.2804, 0.2738, 0.2202, 0.229, 0.2302, 0.881, 0.9498, 0.8974, 0.8276, 0.3028, 0.5504, 0.4894, 0.313, 0.1992, 0.8776, 0.8854, 0.8936, 0.8944, 0.8952, 0.9, 0.9468, 0.8972, 0.895, 0.8938, 0.892, 0.8786, 0.8776, 0.1588, 0.151, 0.1326, 0.103, 0.0898, 0.0642, 0.0552, 0.0358, 0.0322, 0.0316, 0.0318, 0.0316, 0.032, 0.0314, 0.0306, 0.0304, 0.0304, 0.0302, 0.0302, 0.0302, 0.0308, 0.0308, 0.714, 0.8478, 0.883, 0.896, 0.9126, 0.927, 0.9344, 0.949, 0.9464, 0.9312, 0.9172, 0.9046, 0.8886, 0.8606, 0.7624, 0.6958, 0.6824, 0.9474, 0.626, 0.0318, 0.0304, 0.0292, 0.0268, 0.0256, 0.0248, 0.0246, 0.0246, 0.0244, 0.0248, 0.0244, 0.0244, 0.0246, 0.0248, 0.024, 0.024, 0.0238, 0.0232, 0.0232, 0.0226, 0.0206, 0.02, 0.019, 0.0192, 0.0196, 0.0198, 0.02, 0.0198, 0.02, 0.0198, 0.0194, 0.019, 0.019, 0.0192, 0.0196, 0.0194, 0.0204, 0.0202, 0.0206, 0.0208, 0.9328, 0.9362, 0.9402, 0.9414, 0.937, 0.9348, 0.9134, 0.022, 0.021, 0.0212, 0.0212, 0.0214, 0.0216, 0.0214, 0.0212, 0.0206, 0.0208, 0.0206, 0.0204, 0.0206, 0.022, 0.0228, 0.0226, 0.0234, 0.024, 0.7296, 0.0238, 0.0238, 0.0236, 0.0242, 0.0246, 0.025, 0.0254, 0.0254, 0.0256, 0.0258, 0.026, 0.8644, 0.9394, 0.9404, 0.8766, 0.7162, 0.0278, 0.0312, 0.0306, 0.0324, 0.0312, 0.03, 0.0304, 0.0306, 0.0302, 0.0312, 0.0334, 0.0332, 0.1464, 0.0408, 0.04, 0.6464, 0.645, 0.6416, 0.6698, 0.6704, 0.6736, 0.674, 0.6816, 0.6896, 0.6994, 0.7224, 0.7252, 0.7274, 0.7304, 0.732, 0.735, 0.736, 0.739, 0.7416, 0.7444, 0.7474, 0.7508, 0.7532, 0.7546, 0.7578, 0.7592, 0.761, 0.7648, 0.766, 0.7674, 0.7682, 0.771, 0.7748, 0.779, 0.786, 0.8152, 0.8212, 0.8292, 0.8408, 0.8698, 0.8956, 0.9006, 0.9146, 0.927, 0.923, 0.9066, 0.899, 0.8864, 0.853, 0.8324, 0.8254, 0.8176, 0.7934, 0.7822, 0.776, 0.7734, 0.7698, 0.7676, 0.7668, 0.7656, 0.763, 0.7602, 0.7582, 0.7568, 0.7538, 0.7526, 0.7486, 0.7464, 0.743, 0.7404, 0.7376, 0.7356, 0.7332, 0.731, 0.729, 0.7262, 0.7244, 0.704, 0.694, 0.685, 0.6754, 0.674, 0.6732, 0.6698, 0.6694, 0.6352, 0.7252, 0.6988, 0.3346, 0.3302, 0.31, 0.3026, 0.216, 0.2322, 0.2204, 0.336, 0.46, 0.784, 0.7908, 0.7954, 0.8026, 0.8442, 0.8706, 0.9082, 0.9152, 0.916, 0.914, 0.8798, 0.864, 0.8152, 0.7994, 0.7928, 0.7854, 0.782, 0.5258, 0.185, 0.1174, 0.0562, 0.0444, 0.0446, 0.0446, 0.0448, 0.0452, 0.0452, 0.0452, 0.0456, 0.046, 0.0464, 0.7894, 0.7902, 0.7904, 0.7914, 0.8422, 0.949, 0.8318, 0.7914, 0.7904, 0.7902, 0.789, 0.0486, 0.0514, 0.0532, 0.8744, 0.876, 0.879, 0.8806, 0.8822, 0.8936, 0.9246, 0.9426, 0.9466, 0.948, 0.949, 0.9498, 0.9496, 0.9484, 0.9474, 0.9446, 0.9372, 0.9204, 0.8894, 0.8816, 0.8802, 0.8768, 0.8754, 0.8742, 0.1028, 0.1304, 0.1338, 0.1368, 0.1428, 0.1504, 0.1684, 0.232, 0.3354, 0.3738, 0.4282, 0.8748], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/GTP_cyclohydroI.gap.json b/pfam_gap_rates/GTP_cyclohydroI.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..eab8b53abf376ca55aba12b1f828fd0384859b4e
--- /dev/null
+++ b/pfam_gap_rates/GTP_cyclohydroI.gap.json
@@ -0,0 +1 @@
+{"family": "GTP_cyclohydroI", "n_seqs": 1810, "length": 185, "gap_rates": [0.6861878453038674, 0.28895027624309394, 0.12541436464088399, 0.08839779005524862, 0.06353591160220995, 0.05966850828729282, 0.058011049723756904, 0.05580110497237569, 0.05359116022099448, 0.05303867403314917, 0.05138121546961326, 0.052486187845303865, 0.05027624309392265, 0.049723756906077346, 0.049171270718232046, 0.049171270718232046, 0.04806629834254143, 0.04861878453038674, 0.04751381215469613, 0.04585635359116022, 0.04585635359116022, 0.04585635359116022, 0.04585635359116022, 0.045303867403314914, 0.04419889502762431, 0.04419889502762431, 0.04364640883977901, 0.04419889502762431, 0.04364640883977901, 0.04364640883977901, 0.0430939226519337, 0.04364640883977901, 0.8718232044198895, 0.042541436464088395, 0.0430939226519337, 0.0430939226519337, 0.04364640883977901, 0.04585635359116022, 0.041988950276243095, 0.042541436464088395, 0.04143646408839779, 0.042541436464088395, 0.0430939226519337, 0.041988950276243095, 0.8751381215469614, 0.861878453038674, 0.4574585635359116, 0.07348066298342541, 0.04696132596685083, 0.04419889502762431, 0.0430939226519337, 0.04696132596685083, 0.04806629834254143, 0.04751381215469613, 0.04861878453038674, 0.056353591160221, 0.8447513812154697, 0.8071823204419889, 0.1723756906077348, 0.1558011049723757, 0.04033149171270718, 0.03867403314917127, 0.03812154696132597, 0.03591160220994475, 0.036464088397790057, 0.03591160220994475, 0.03591160220994475, 0.037016574585635356, 0.036464088397790057, 0.036464088397790057, 0.03535911602209945, 0.034806629834254144, 0.03425414364640884, 0.03535911602209945, 0.034806629834254144, 0.03535911602209945, 0.03535911602209945, 0.03535911602209945, 0.03535911602209945, 0.03535911602209945, 0.03535911602209945, 0.03535911602209945, 0.03591160220994475, 0.03591160220994475, 0.03535911602209945, 0.034806629834254144, 0.03149171270718232, 0.032044198895027624, 0.034806629834254144, 0.03425414364640884, 0.03425414364640884, 0.03535911602209945, 0.03425414364640884, 0.8701657458563536, 0.7176795580110498, 0.034806629834254144, 0.03535911602209945, 0.034806629834254144, 0.03591160220994475, 0.034806629834254144, 0.03591160220994475, 0.036464088397790057, 0.037016574585635356, 0.03591160220994475, 0.036464088397790057, 0.036464088397790057, 0.037016574585635356, 0.037016574585635356, 0.036464088397790057, 0.03591160220994475, 0.03535911602209945, 0.034806629834254144, 0.034806629834254144, 0.03535911602209945, 0.037016574585635356, 0.03756906077348066, 0.03756906077348066, 0.04033149171270718, 0.04143646408839779, 0.04143646408839779, 0.04143646408839779, 0.039779005524861875, 0.039779005524861875, 0.04033149171270718, 0.039779005524861875, 0.039779005524861875, 0.039779005524861875, 0.039779005524861875, 0.04033149171270718, 0.04033149171270718, 0.04033149171270718, 0.039779005524861875, 0.039779005524861875, 0.04751381215469613, 0.04088397790055249, 0.05359116022099448, 0.044751381215469614, 0.04088397790055249, 0.039779005524861875, 0.039226519337016576, 0.039226519337016576, 0.039226519337016576, 0.039226519337016576, 0.03812154696132597, 0.03756906077348066, 0.039226519337016576, 0.04143646408839779, 0.04143646408839779, 0.06022099447513812, 0.06132596685082873, 0.062430939226519336, 0.06298342541436464, 0.06519337016574586, 0.06519337016574586, 0.06629834254143646, 0.06685082872928177, 0.06574585635359116, 0.06850828729281767, 0.06574585635359116, 0.06629834254143646, 0.06574585635359116, 0.06574585635359116, 0.06629834254143646, 0.06629834254143646, 0.06795580110497237, 0.06685082872928177, 0.06685082872928177, 0.06850828729281767, 0.06906077348066299, 0.06906077348066299, 0.07016574585635359, 0.22320441988950276, 0.07734806629834254, 0.08176795580110498, 0.08508287292817679, 0.08839779005524862, 0.09060773480662983, 0.09116022099447514, 0.09502762430939227, 0.09889502762430939, 0.10331491712707182, 0.10939226519337017, 0.12320441988950276, 0.14696132596685083, 0.2281767955801105], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/GerA.gap.json b/pfam_gap_rates/GerA.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..9e95e92ab0572c9348407501519c45214e47a926
--- /dev/null
+++ b/pfam_gap_rates/GerA.gap.json
@@ -0,0 +1 @@
+{"family": "GerA", "n_seqs": 1308, "length": 477, "gap_rates": [0.5603975535168195, 0.35397553516819574, 0.3172782874617737, 0.28440366972477066, 0.24388379204892965, 0.14602446483180428, 0.11162079510703364, 0.095565749235474, 0.9029051987767585, 0.9021406727828746, 0.08486238532110092, 0.08486238532110092, 0.08409785932721713, 0.08333333333333333, 0.08333333333333333, 0.08180428134556575, 0.08180428134556575, 0.08027522935779817, 0.08103975535168195, 0.08027522935779817, 0.0779816513761468, 0.6429663608562691, 0.7408256880733946, 0.5122324159021406, 0.08409785932721713, 0.10932721712538226, 0.08792048929663608, 0.0779816513761468, 0.07110091743119266, 0.07110091743119266, 0.06804281345565749, 0.06804281345565749, 0.06804281345565749, 0.06804281345565749, 0.0672782874617737, 0.0672782874617737, 0.0672782874617737, 0.0672782874617737, 0.06651376146788991, 0.06651376146788991, 0.06651376146788991, 0.06651376146788991, 0.06651376146788991, 0.06651376146788991, 0.06804281345565749, 0.31269113149847094, 0.06651376146788991, 0.06651376146788991, 0.07110091743119266, 0.0672782874617737, 0.06574923547400612, 0.20948012232415902, 0.19495412844036697, 0.08256880733944955, 0.07874617737003058, 0.0871559633027523, 0.18730886850152906, 0.22247706422018348, 0.23623853211009174, 0.32339449541284404, 0.34174311926605505, 0.20107033639143732, 0.4304281345565749, 0.6391437308868502, 0.7522935779816514, 0.8279816513761468, 0.9021406727828746, 0.9418960244648318, 0.8723241590214067, 0.7874617737003058, 0.7079510703363915, 0.5787461773700305, 0.35015290519877673, 0.11314984709480122, 0.1536697247706422, 0.17966360856269112, 0.1162079510703364, 0.06498470948012232, 0.06498470948012232, 0.06422018348623854, 0.06422018348623854, 0.06422018348623854, 0.06651376146788991, 0.06345565749235474, 0.06269113149847094, 0.06116207951070336, 0.06116207951070336, 0.06116207951070336, 0.06039755351681957, 0.06422018348623854, 0.06116207951070336, 0.06039755351681957, 0.05963302752293578, 0.05963302752293578, 0.0581039755351682, 0.0581039755351682, 0.0581039755351682, 0.0581039755351682, 0.05733944954128441, 0.05733944954128441, 0.05733944954128441, 0.05733944954128441, 0.05733944954128441, 0.05657492354740061, 0.05657492354740061, 0.05657492354740061, 0.058868501529051986, 0.0581039755351682, 0.06039755351681957, 0.08944954128440367, 0.10856269113149847, 0.06804281345565749, 0.054281345565749234, 0.05504587155963303, 0.053516819571865444, 0.054281345565749234, 0.054281345565749234, 0.05504587155963303, 0.05504587155963303, 0.05581039755351682, 0.05581039755351682, 0.05581039755351682, 0.05504587155963303, 0.05504587155963303, 0.05581039755351682, 0.05581039755351682, 0.05581039755351682, 0.05581039755351682, 0.05581039755351682, 0.05504587155963303, 0.054281345565749234, 0.052752293577981654, 0.05198776758409786, 0.05198776758409786, 0.05045871559633028, 0.05045871559633028, 0.05045871559633028, 0.05122324159021407, 0.052752293577981654, 0.052752293577981654, 0.052752293577981654, 0.052752293577981654, 0.052752293577981654, 0.05198776758409786, 0.05198776758409786, 0.05198776758409786, 0.05198776758409786, 0.05198776758409786, 0.052752293577981654, 0.052752293577981654, 0.052752293577981654, 0.052752293577981654, 0.052752293577981654, 0.052752293577981654, 0.052752293577981654, 0.052752293577981654, 0.053516819571865444, 0.053516819571865444, 0.053516819571865444, 0.052752293577981654, 0.052752293577981654, 0.052752293577981654, 0.052752293577981654, 0.053516819571865444, 0.05122324159021407, 0.05198776758409786, 0.05198776758409786, 0.05122324159021407, 0.05122324159021407, 0.05122324159021407, 0.05198776758409786, 0.053516819571865444, 0.054281345565749234, 0.052752293577981654, 0.052752293577981654, 0.053516819571865444, 0.054281345565749234, 0.053516819571865444, 0.053516819571865444, 0.052752293577981654, 0.052752293577981654, 0.052752293577981654, 0.05198776758409786, 0.05198776758409786, 0.05198776758409786, 0.05122324159021407, 0.05122324159021407, 0.05122324159021407, 0.05122324159021407, 0.05198776758409786, 0.05122324159021407, 0.05122324159021407, 0.05122324159021407, 0.05198776758409786, 0.05198776758409786, 0.05122324159021407, 0.05198776758409786, 0.052752293577981654, 0.052752293577981654, 0.052752293577981654, 0.054281345565749234, 0.052752293577981654, 0.052752293577981654, 0.05504587155963303, 0.053516819571865444, 0.05504587155963303, 0.053516819571865444, 0.052752293577981654, 0.05045871559633028, 0.05045871559633028, 0.05045871559633028, 0.05122324159021407, 0.7996941896024465, 0.05122324159021407, 0.05122324159021407, 0.05122324159021407, 0.05122324159021407, 0.052752293577981654, 0.052752293577981654, 0.07951070336391437, 0.058868501529051986, 0.05733944954128441, 0.9143730886850153, 0.0581039755351682, 0.053516819571865444, 0.05198776758409786, 0.05198776758409786, 0.05198776758409786, 0.05198776758409786, 0.05198776758409786, 0.05198776758409786, 0.05198776758409786, 0.05198776758409786, 0.05198776758409786, 0.05198776758409786, 0.053516819571865444, 0.053516819571865444, 0.053516819571865444, 0.053516819571865444, 0.053516819571865444, 0.054281345565749234, 0.054281345565749234, 0.053516819571865444, 0.053516819571865444, 0.053516819571865444, 0.053516819571865444, 0.052752293577981654, 0.052752293577981654, 0.052752293577981654, 0.052752293577981654, 0.05122324159021407, 0.05045871559633028, 0.05045871559633028, 0.05045871559633028, 0.05045871559633028, 0.05045871559633028, 0.04969418960244648, 0.05045871559633028, 0.05045871559633028, 0.05045871559633028, 0.05045871559633028, 0.05045871559633028, 0.05045871559633028, 0.05045871559633028, 0.05045871559633028, 0.05045871559633028, 0.05122324159021407, 0.05122324159021407, 0.05198776758409786, 0.052752293577981654, 0.052752293577981654, 0.052752293577981654, 0.052752293577981654, 0.052752293577981654, 0.052752293577981654, 0.052752293577981654, 0.052752293577981654, 0.052752293577981654, 0.052752293577981654, 0.052752293577981654, 0.054281345565749234, 0.05581039755351682, 0.05581039755351682, 0.05963302752293578, 0.052752293577981654, 0.052752293577981654, 0.052752293577981654, 0.053516819571865444, 0.054281345565749234, 0.054281345565749234, 0.054281345565749234, 0.054281345565749234, 0.054281345565749234, 0.054281345565749234, 0.054281345565749234, 0.05504587155963303, 0.054281345565749234, 0.054281345565749234, 0.054281345565749234, 0.054281345565749234, 0.054281345565749234, 0.054281345565749234, 0.05581039755351682, 0.05581039755351682, 0.0581039755351682, 0.05657492354740061, 0.05733944954128441, 0.05963302752293578, 0.2423547400611621, 0.06422018348623854, 0.06498470948012232, 0.06039755351681957, 0.05963302752293578, 0.06192660550458716, 0.05963302752293578, 0.23547400611620795, 0.077217125382263, 0.06651376146788991, 0.06269113149847094, 0.06345565749235474, 0.06039755351681957, 0.05963302752293578, 0.058868501529051986, 0.06192660550458716, 0.06498470948012232, 0.06498470948012232, 0.05963302752293578, 0.06116207951070336, 0.21865443425076453, 0.06345565749235474, 0.0581039755351682, 0.05657492354740061, 0.05504587155963303, 0.05504587155963303, 0.05657492354740061, 0.05657492354740061, 0.05657492354740061, 0.05657492354740061, 0.05657492354740061, 0.05504587155963303, 0.05504587155963303, 0.05504587155963303, 0.05504587155963303, 0.05504587155963303, 0.054281345565749234, 0.054281345565749234, 0.054281345565749234, 0.054281345565749234, 0.054281345565749234, 0.054281345565749234, 0.054281345565749234, 0.05504587155963303, 0.05581039755351682, 0.05504587155963303, 0.05504587155963303, 0.054281345565749234, 0.054281345565749234, 0.052752293577981654, 0.052752293577981654, 0.052752293577981654, 0.052752293577981654, 0.052752293577981654, 0.054281345565749234, 0.054281345565749234, 0.054281345565749234, 0.054281345565749234, 0.054281345565749234, 0.05504587155963303, 0.05504587155963303, 0.054281345565749234, 0.054281345565749234, 0.054281345565749234, 0.054281345565749234, 0.05504587155963303, 0.05504587155963303, 0.05504587155963303, 0.05504587155963303, 0.05504587155963303, 0.05581039755351682, 0.05581039755351682, 0.05581039755351682, 0.05581039755351682, 0.05581039755351682, 0.054281345565749234, 0.054281345565749234, 0.054281345565749234, 0.054281345565749234, 0.054281345565749234, 0.053516819571865444, 0.053516819571865444, 0.054281345565749234, 0.054281345565749234, 0.053516819571865444, 0.053516819571865444, 0.054281345565749234, 0.054281345565749234, 0.053516819571865444, 0.054281345565749234, 0.05657492354740061, 0.05657492354740061, 0.12691131498470948, 0.12614678899082568, 0.05504587155963303, 0.05581039755351682, 0.05504587155963303, 0.053516819571865444, 0.05581039755351682, 0.05504587155963303, 0.05122324159021407, 0.05122324159021407, 0.05122324159021407, 0.05122324159021407, 0.05122324159021407, 0.05122324159021407, 0.05122324159021407, 0.05122324159021407, 0.05122324159021407, 0.05045871559633028, 0.05045871559633028, 0.05045871559633028, 0.05045871559633028, 0.05045871559633028, 0.04969418960244648, 0.04969418960244648, 0.04969418960244648, 0.04969418960244648, 0.04969418960244648, 0.04969418960244648, 0.04969418960244648, 0.04969418960244648, 0.04969418960244648, 0.04969418960244648, 0.05045871559633028, 0.05045871559633028, 0.05122324159021407, 0.05122324159021407, 0.05122324159021407, 0.05122324159021407, 0.05198776758409786, 0.05198776758409786, 0.05198776758409786, 0.05198776758409786, 0.05198776758409786, 0.9281345565749235, 0.052752293577981654, 0.052752293577981654, 0.052752293577981654, 0.052752293577981654, 0.052752293577981654, 0.058868501529051986, 0.07492354740061162, 0.077217125382263, 0.0856269113149847, 0.08486238532110092, 0.08333333333333333, 0.10550458715596331, 0.09709480122324159, 0.09327217125382263, 0.10321100917431193, 0.11773700305810397, 0.095565749235474, 0.09480122324159021, 0.0963302752293578, 0.09709480122324159, 0.09862385321100918, 0.10168195718654434, 0.10397553516819572, 0.10932721712538226, 0.1154434250764526, 0.12155963302752294, 0.13379204892966362, 0.1620795107033639, 0.18960244648318042, 0.2324159021406728, 0.26758409785932724, 0.30963302752293576, 0.4785932721712538], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Germane.gap.json b/pfam_gap_rates/Germane.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..13e1ea50bfdff293ceb3c8164eedc34c59b7ac5e
--- /dev/null
+++ b/pfam_gap_rates/Germane.gap.json
@@ -0,0 +1 @@
+{"family": "Germane", "n_seqs": 1219, "length": 141, "gap_rates": [0.6480721903199343, 0.22969647251845776, 0.1657095980311731, 0.15504511894995898, 0.1468416735028712, 0.9466776045939295, 0.14602132895816242, 0.14520098441345364, 0.162428219852338, 0.14191960623461855, 0.645611156685808, 0.8564397046759639, 0.9343724364232978, 0.8982772764561116, 0.7358490566037735, 0.4585726004922067, 0.140278917145201, 0.6529942575881871, 0.940935192780968, 0.24528301886792453, 0.20426579163248565, 0.21493027071369974, 0.19770303527481542, 0.9048400328137818, 0.39868744872846595, 0.2461033634126333, 0.34290401968826906, 0.34290401968826906, 0.33470057424118127, 0.3281378178835111, 0.13945857260049221, 0.5783429040196882, 0.8162428219852338, 0.8736669401148482, 0.7309269893355209, 0.3970467596390484, 0.11074651353568499, 0.05086136177194422, 0.02378999179655455, 0.022969647251845776, 0.022969647251845776, 0.01394585726004922, 0.013125512715340444, 0.013125512715340444, 0.011484823625922888, 0.011484823625922888, 0.016406890894175553, 0.012305168170631665, 0.012305168170631665, 0.012305168170631665, 0.9491386382280558, 0.03609515996718622, 0.9368334700574241, 0.02461033634126333, 0.019688269073010665, 0.44544708777686626, 0.6431501230516817, 0.9351927809680065, 0.7776866283839212, 0.5988515176374077, 0.14602132895816242, 0.06890894175553733, 0.05988515176374077, 0.05004101722723544, 0.04265791632485644, 0.03937653814602133, 0.03609515996718622, 0.009844134536505332, 0.031173092698933553, 0.007383100902378999, 0.007383100902378999, 0.006562756357670222, 0.020508613617719443, 0.019688269073010665, 0.015586546349466776, 0.01066447908121411, 0.014766201804757998, 0.9269893355209188, 0.007383100902378999, 0.004922067268252666, 0.007383100902378999, 0.01804757998359311, 0.005742411812961444, 0.8589007383100903, 0.9351927809680065, 0.77850697292863, 0.004101722723543888, 0.003281378178835111, 0.0016406890894175555, 0.0008203445447087777, 0.0008203445447087777, 0.0, 0.0008203445447087777, 0.0008203445447087777, 0.10746513535684987, 0.09844134536505332, 0.002461033634126333, 0.14109926168990977, 0.6595570139458573, 0.8211648892534865, 0.41755537325676784, 0.05332239540607055, 0.0008203445447087777, 0.05004101722723544, 0.03691550451189499, 0.03855619360131255, 0.04265791632485644, 0.054142739950779326, 0.003281378178835111, 0.8851517637407711, 0.9327317473338802, 0.8063986874487284, 0.002461033634126333, 0.002461033634126333, 0.002461033634126333, 0.002461033634126333, 0.002461033634126333, 0.002461033634126333, 0.002461033634126333, 0.002461033634126333, 0.002461033634126333, 0.002461033634126333, 0.9204265791632485, 0.007383100902378999, 0.006562756357670222, 0.008203445447087777, 0.03855619360131255, 0.015586546349466776, 0.009844134536505332, 0.009023789991796555, 0.009023789991796555, 0.009844134536505332, 0.011484823625922888, 0.019688269073010665, 0.03937653814602133, 0.0475799835931091, 0.05824446267432322, 0.08777686628383921, 0.23707957342083674, 0.4856439704675964, 0.9163248564397046], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/GlnD_UR_UTase.gap.json b/pfam_gap_rates/GlnD_UR_UTase.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..93ea6f17d4a806986869f5e906819e23ab619998
--- /dev/null
+++ b/pfam_gap_rates/GlnD_UR_UTase.gap.json
@@ -0,0 +1 @@
+{"family": "GlnD_UR_UTase", "n_seqs": 2094, "length": 156, "gap_rates": [0.7569245463228271, 0.36198662846227314, 0.20678127984718242, 0.17765042979942694, 0.16475644699140402, 0.1518624641833811, 0.13276026743075453, 0.12368672397325692, 0.11509073543457497, 0.11127029608404966, 0.1017191977077364, 0.09742120343839542, 0.1303724928366762, 0.10267430754536772, 0.11652340019102196, 0.12177650429799428, 0.1308500477554919, 0.16332378223495703, 0.6743075453677173, 0.60792741165234, 0.7153772683858644, 0.664756446991404, 0.5085959885386819, 0.4723018147086915, 0.3438395415472779, 0.2602674307545368, 0.039637058261700095, 0.027698185291308502, 0.027698185291308502, 0.027220630372492838, 0.027220630372492838, 0.027220630372492838, 0.027220630372492838, 0.027220630372492838, 0.026743075453677174, 0.026743075453677174, 0.02626552053486151, 0.02626552053486151, 0.02626552053486151, 0.025787965616045846, 0.026743075453677174, 0.02913085004775549, 0.03151862464183381, 0.034383954154727794, 0.039159503342884434, 0.041069723018147083, 0.04202483285577841, 0.04250238777459408, 0.04297994269340974, 0.3471824259789876, 0.34001910219675263, 0.33715377268385865, 0.3390639923591213, 0.3319006685768863, 0.3256924546322827, 0.3247373447946514, 0.8863419293218721, 0.3237822349570201, 0.3218720152817574, 0.31900668576886343, 0.31614135625596945, 0.05730659025787966, 0.04775549188156638, 0.04727793696275072, 0.04632282712511939, 0.044890162368672396, 0.04297994269340974, 0.04250238777459408, 0.034861509073543455, 0.034383954154727794, 0.031041069723018146, 0.04536771728748806, 0.03151862464183381, 0.030563514804202482, 0.028175740210124166, 0.027698185291308502, 0.026743075453677174, 0.030563514804202482, 0.03199617956064948, 0.03008595988538682, 0.03151862464183381, 0.027220630372492838, 0.02387774594078319, 0.02387774594078319, 0.021967526265520534, 0.021967526265520534, 0.021967526265520534, 0.022922636103151862, 0.023400191021967526, 0.024355300859598854, 0.024832855778414518, 0.027220630372492838, 0.029608404966571154, 0.03247373447946514, 0.034383954154727794, 0.039637058261700095, 0.06351480420248329, 0.06494746895893028, 0.07115568290353391, 0.0964660936007641, 0.10744985673352435, 0.12177650429799428, 0.14040114613180515, 0.1489971346704871, 0.15472779369627507, 0.15902578796561603, 0.16189111747851004, 0.16332378223495703, 0.16189111747851004, 0.16380133715377268, 0.166189111747851, 0.5019102196752626, 0.4933142311365807, 0.17621776504297995, 0.17096466093600765, 0.1714422158548233, 0.17191977077363896, 0.1728748806112703, 0.17335243553008595, 0.17430754536771728, 0.1766953199617956, 0.17717287488061126, 0.17956064947468958, 0.18051575931232092, 0.545367717287488, 0.7010506208213945, 0.5238777459407832, 0.22731614135625597, 0.1991404011461318, 0.2082139446036294, 0.21537726838586438, 0.18672397325692455, 0.673352435530086, 0.9422158548233047, 0.6910219675262655, 0.6628462273161414, 0.18624641833810887, 0.18624641833810887, 0.18672397325692455, 0.18672397325692455, 0.18815663801337154, 0.1886341929321872, 0.18911174785100288, 0.18958930276981853, 0.19054441260744986, 0.19436485195797518, 0.20009551098376313, 0.20391595033428844, 0.2086914995224451, 0.218720152817574, 0.23304680038204392, 0.2454632282712512, 0.2717287488061127, 0.3137535816618911, 0.39111747851002865, 0.6466093600764088], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Glu-tRNAGln.gap.json b/pfam_gap_rates/Glu-tRNAGln.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..546974cb495d5706e1bb7a95ac2dd63cb44570d6
--- /dev/null
+++ b/pfam_gap_rates/Glu-tRNAGln.gap.json
@@ -0,0 +1 @@
+{"family": "Glu-tRNAGln", "n_seqs": 2057, "length": 79, "gap_rates": [0.39620807000486147, 0.15167719980554206, 0.08896451142440447, 0.060281964025279536, 0.0481283422459893, 0.040350024307243555, 0.03403014098201264, 0.02916869227029655, 0.025279533300923675, 0.02333495381623724, 0.012153621779290228, 0.006806028196402528, 0.002916869227029655, 0.002916869227029655, 0.0024307243558580457, 0.0024307243558580457, 0.0024307243558580457, 0.0019445794846864365, 0.0019445794846864365, 0.0014584346135148275, 0.0019445794846864365, 0.0014584346135148275, 0.0004861448711716091, 0.0, 0.0, 0.0, 0.0, 0.014584346135148274, 0.014098201263976665, 0.007778317938745746, 0.007292173067574137, 0.00583373845405931, 0.01118133203694701, 0.023821098687408847, 0.021876519202722412, 0.020418084589207585, 0.0053475935828877, 0.03403014098201264, 0.06951871657754011, 0.8240155566358774, 0.9256198347107438, 0.9382596013612057, 0.9110354885755956, 0.08799222168206125, 0.05201750121536218, 0.024793388429752067, 0.018473505104521146, 0.030140982012639768, 0.026251823043266894, 0.009722897423432183, 0.009722897423432183, 0.015556635877491492, 0.003403014098201264, 0.01118133203694701, 0.025765678172095283, 0.8371414681575109, 0.9358288770053476, 0.8765192027224112, 0.08167233835683034, 0.014098201263976665, 0.008264462809917356, 0.00583373845405931, 0.015556635877491492, 0.015556635877491492, 0.014098201263976665, 0.016042780748663103, 0.01750121536217793, 0.018473505104521146, 0.019445794846864366, 0.022848808945065628, 0.021876519202722412, 0.02333495381623724, 0.03208556149732621, 0.030140982012639768, 0.03208556149732621, 0.03694701020904229, 0.04083616917841517, 0.06951871657754011, 0.1594555177442878], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Gluconate_2-dh3.gap.json b/pfam_gap_rates/Gluconate_2-dh3.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e1b443e5a12ea9a55a09b0915a32f810754c674b
--- /dev/null
+++ b/pfam_gap_rates/Gluconate_2-dh3.gap.json
@@ -0,0 +1 @@
+{"family": "Gluconate_2-dh3", "n_seqs": 417, "length": 182, "gap_rates": [0.9232613908872902, 0.3597122302158273, 0.19424460431654678, 0.13189448441247004, 0.10071942446043165, 0.07673860911270983, 0.06474820143884892, 0.05995203836930456, 0.05275779376498801, 0.050359712230215826, 0.050359712230215826, 0.050359712230215826, 0.050359712230215826, 0.050359712230215826, 0.047961630695443645, 0.050359712230215826, 0.05995203836930456, 0.38609112709832133, 0.8776978417266187, 0.1774580335731415, 0.08872901678657075, 0.7410071942446043, 0.6306954436450839, 0.05755395683453238, 0.05515587529976019, 0.050359712230215826, 0.03357314148681055, 0.03357314148681055, 0.03357314148681055, 0.03597122302158273, 0.023980815347721823, 0.023980815347721823, 0.023980815347721823, 0.023980815347721823, 0.026378896882494004, 0.023980815347721823, 0.023980815347721823, 0.023980815347721823, 0.023980815347721823, 0.023980815347721823, 0.023980815347721823, 0.5755395683453237, 0.5947242206235012, 0.5995203836930456, 0.6139088729016786, 0.7146282973621103, 0.7146282973621103, 0.7194244604316546, 0.7242206235011991, 0.7266187050359713, 0.7314148681055156, 0.7338129496402878, 0.7769784172661871, 0.9160671462829736, 0.7338129496402878, 0.7338129496402878, 0.7314148681055156, 0.7242206235011991, 0.7218225419664268, 0.7170263788968825, 0.7146282973621103, 0.7146282973621103, 0.5995203836930456, 0.5995203836930456, 0.592326139088729, 0.5683453237410072, 0.16546762589928057, 0.1486810551558753, 0.0407673860911271, 0.03357314148681055, 0.03357314148681055, 0.2589928057553957, 0.02158273381294964, 0.02158273381294964, 0.02158273381294964, 0.019184652278177457, 0.02158273381294964, 0.019184652278177457, 0.016786570743405275, 0.016786570743405275, 0.016786570743405275, 0.014388489208633094, 0.014388489208633094, 0.019184652278177457, 0.03836930455635491, 0.06235011990407674, 0.06474820143884892, 0.07434052757793765, 0.06954436450839328, 0.06235011990407674, 0.07913669064748201, 0.05755395683453238, 0.947242206235012, 0.03117505995203837, 0.026378896882494004, 0.023980815347721823, 0.019184652278177457, 0.019184652278177457, 0.019184652278177457, 0.019184652278177457, 0.019184652278177457, 0.019184652278177457, 0.019184652278177457, 0.019184652278177457, 0.019184652278177457, 0.019184652278177457, 0.019184652278177457, 0.019184652278177457, 0.019184652278177457, 0.019184652278177457, 0.019184652278177457, 0.019184652278177457, 0.02158273381294964, 0.02158273381294964, 0.026378896882494004, 0.5299760191846523, 0.7889688249400479, 0.841726618705036, 0.8729016786570744, 0.9016786570743405, 0.9184652278177458, 0.9232613908872902, 0.9328537170263789, 0.935251798561151, 0.947242206235012, 0.9424460431654677, 0.9328537170263789, 0.9304556354916067, 0.9232613908872902, 0.9064748201438849, 0.8968824940047961, 0.8465227817745803, 0.815347721822542, 0.6954436450839329, 0.381294964028777, 0.11990407673860912, 0.4676258992805755, 0.4460431654676259, 0.29256594724220625, 0.19424460431654678, 0.18705035971223022, 0.19664268585131894, 0.15347721822541965, 0.1486810551558753, 0.11990407673860912, 0.09832134292565947, 0.026378896882494004, 0.019184652278177457, 0.019184652278177457, 0.019184652278177457, 0.9256594724220624, 0.019184652278177457, 0.019184652278177457, 0.019184652278177457, 0.019184652278177457, 0.02158273381294964, 0.023980815347721823, 0.023980815347721823, 0.023980815347721823, 0.023980815347721823, 0.023980815347721823, 0.023980815347721823, 0.023980815347721823, 0.023980815347721823, 0.02877697841726619, 0.03117505995203837, 0.16786570743405277, 0.16786570743405277, 0.18465227817745802, 0.21103117505995203, 0.6019184652278178, 0.5755395683453237, 0.20863309352517986, 0.2182254196642686, 0.1079136690647482, 0.14148681055155876, 0.15587529976019185, 0.18465227817745802, 0.5227817745803357, 0.5323741007194245, 0.2565947242206235, 0.2709832134292566], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/GlutR_dimer.gap.json b/pfam_gap_rates/GlutR_dimer.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c06cc483ad8f21842545104962bd07d351138486
--- /dev/null
+++ b/pfam_gap_rates/GlutR_dimer.gap.json
@@ -0,0 +1 @@
+{"family": "GlutR_dimer", "n_seqs": 1180, "length": 109, "gap_rates": [0.41271186440677965, 0.10677966101694915, 0.07796610169491526, 0.04915254237288136, 0.02457627118644068, 0.016101694915254237, 0.013559322033898305, 0.011864406779661017, 0.011864406779661017, 0.011016949152542373, 0.011016949152542373, 0.011016949152542373, 0.010169491525423728, 0.009322033898305085, 0.009322033898305085, 0.009322033898305085, 0.010169491525423728, 0.011016949152542373, 0.009322033898305085, 0.00847457627118644, 0.007627118644067797, 0.006779661016949152, 0.005932203389830509, 0.005932203389830509, 0.005932203389830509, 0.005932203389830509, 0.005932203389830509, 0.005932203389830509, 0.005932203389830509, 0.005932203389830509, 0.005932203389830509, 0.005084745762711864, 0.005932203389830509, 0.005932203389830509, 0.005932203389830509, 0.006779661016949152, 0.005932203389830509, 0.005932203389830509, 0.007627118644067797, 0.007627118644067797, 0.00847457627118644, 0.00847457627118644, 0.007627118644067797, 0.005084745762711864, 0.005084745762711864, 0.015254237288135594, 0.0211864406779661, 0.03135593220338983, 0.09322033898305085, 0.48389830508474574, 0.938135593220339, 0.8364406779661017, 0.4110169491525424, 0.03220338983050847, 0.022033898305084745, 0.01864406779661017, 0.013559322033898305, 0.016101694915254237, 0.011864406779661017, 0.025423728813559324, 0.6983050847457627, 0.006779661016949152, 0.005084745762711864, 0.003389830508474576, 0.002542372881355932, 0.002542372881355932, 0.002542372881355932, 0.003389830508474576, 0.003389830508474576, 0.003389830508474576, 0.003389830508474576, 0.003389830508474576, 0.003389830508474576, 0.003389830508474576, 0.003389830508474576, 0.003389830508474576, 0.00423728813559322, 0.00423728813559322, 0.00423728813559322, 0.005932203389830509, 0.006779661016949152, 0.006779661016949152, 0.007627118644067797, 0.013559322033898305, 0.49830508474576274, 0.9415254237288135, 0.9169491525423729, 0.3440677966101695, 0.0423728813559322, 0.11610169491525424, 0.13050847457627118, 0.1652542372881356, 0.036440677966101696, 0.7923728813559322, 0.9330508474576271, 0.9144067796610169, 0.5177966101694915, 0.03983050847457627, 0.03898305084745763, 0.03983050847457627, 0.04745762711864407, 0.048305084745762714, 0.05508474576271186, 0.06440677966101695, 0.07457627118644068, 0.09067796610169492, 0.11440677966101695, 0.2228813559322034, 0.43135593220338986], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Glyco_hyd_65N_2.gap.json b/pfam_gap_rates/Glyco_hyd_65N_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..5eee3a869082cedcbff52dd39eefec06a18c659a
--- /dev/null
+++ b/pfam_gap_rates/Glyco_hyd_65N_2.gap.json
@@ -0,0 +1 @@
+{"family": "Glyco_hyd_65N_2", "n_seqs": 770, "length": 298, "gap_rates": [0.3948051948051948, 0.3090909090909091, 0.23766233766233766, 0.21558441558441557, 0.1961038961038961, 0.18571428571428572, 0.18311688311688312, 0.17272727272727273, 0.15974025974025974, 0.9142857142857143, 0.9441558441558442, 0.9324675324675324, 0.8883116883116883, 0.15194805194805194, 0.15194805194805194, 0.8246753246753247, 0.14285714285714285, 0.14155844155844155, 0.13896103896103895, 0.13896103896103895, 0.13896103896103895, 0.13896103896103895, 0.13896103896103895, 0.13896103896103895, 0.13896103896103895, 0.13896103896103895, 0.13896103896103895, 0.13766233766233765, 0.12727272727272726, 0.12597402597402596, 0.12597402597402596, 0.12727272727272726, 0.12467532467532468, 0.12727272727272726, 0.13766233766233765, 0.12467532467532468, 0.12337662337662338, 0.11948051948051948, 0.11818181818181818, 0.11818181818181818, 0.11818181818181818, 0.11818181818181818, 0.11818181818181818, 0.12077922077922078, 0.12077922077922078, 0.12337662337662338, 0.12597402597402596, 0.12727272727272726, 0.12727272727272726, 0.9324675324675324, 0.12987012987012986, 0.13376623376623376, 0.13506493506493505, 0.14545454545454545, 0.15454545454545454, 0.15974025974025974, 0.16753246753246753, 0.16753246753246753, 0.16883116883116883, 0.8311688311688312, 0.8389610389610389, 0.8532467532467533, 0.9142857142857143, 0.9493506493506494, 0.9415584415584416, 0.8766233766233766, 0.8506493506493507, 0.8389610389610389, 0.7779220779220779, 0.2038961038961039, 0.17662337662337663, 0.17272727272727273, 0.17272727272727273, 0.16883116883116883, 0.17142857142857143, 0.17012987012987013, 0.17012987012987013, 0.16753246753246753, 0.16753246753246753, 0.16753246753246753, 0.16753246753246753, 0.16753246753246753, 0.16883116883116883, 0.16883116883116883, 0.16883116883116883, 0.16883116883116883, 0.16753246753246753, 0.18961038961038962, 0.18051948051948052, 0.17402597402597403, 0.17402597402597403, 0.2051948051948052, 0.17662337662337663, 0.17402597402597403, 0.17272727272727273, 0.17142857142857143, 0.16883116883116883, 0.16363636363636364, 0.16103896103896104, 0.16363636363636364, 0.16103896103896104, 0.18051948051948052, 0.8571428571428571, 0.8909090909090909, 0.9298701298701298, 0.9337662337662338, 0.9376623376623376, 0.9337662337662338, 0.9051948051948052, 0.8766233766233766, 0.8480519480519481, 0.22597402597402597, 0.6506493506493507, 0.36753246753246754, 0.3233766233766234, 0.12077922077922078, 0.11818181818181818, 0.11558441558441558, 0.11428571428571428, 0.11298701298701298, 0.11298701298701298, 0.10909090909090909, 0.10779220779220779, 0.10779220779220779, 0.10649350649350649, 0.8948051948051948, 0.9415584415584416, 0.9454545454545454, 0.9168831168831169, 0.8311688311688312, 0.5857142857142857, 0.2012987012987013, 0.12077922077922078, 0.10909090909090909, 0.10649350649350649, 0.10779220779220779, 0.11168831168831168, 0.11168831168831168, 0.10519480519480519, 0.10519480519480519, 0.10649350649350649, 0.11038961038961038, 0.11038961038961038, 0.10519480519480519, 0.10519480519480519, 0.1038961038961039, 0.1038961038961039, 0.1025974025974026, 0.1025974025974026, 0.1012987012987013, 0.1012987012987013, 0.1012987012987013, 0.1, 0.1012987012987013, 0.1012987012987013, 0.10909090909090909, 0.10779220779220779, 0.11168831168831168, 0.11688311688311688, 0.11168831168831168, 0.11558441558441558, 0.11298701298701298, 0.11428571428571428, 0.11038961038961038, 0.10909090909090909, 0.10779220779220779, 0.10519480519480519, 0.10519480519480519, 0.10519480519480519, 0.10649350649350649, 0.10779220779220779, 0.11168831168831168, 0.11298701298701298, 0.11298701298701298, 0.11298701298701298, 0.11168831168831168, 0.11168831168831168, 0.10909090909090909, 0.10909090909090909, 0.11038961038961038, 0.12337662337662338, 0.12077922077922078, 0.12077922077922078, 0.11818181818181818, 0.11688311688311688, 0.21688311688311687, 0.18961038961038962, 0.14155844155844155, 0.938961038961039, 0.12857142857142856, 0.12077922077922078, 0.12077922077922078, 0.12207792207792208, 0.12207792207792208, 0.12207792207792208, 0.12337662337662338, 0.12467532467532468, 0.12597402597402596, 0.24805194805194805, 0.535064935064935, 0.7415584415584415, 0.8506493506493507, 0.9272727272727272, 0.9363636363636364, 0.8961038961038961, 0.8116883116883117, 0.6818181818181818, 0.17272727272727273, 0.14155844155844155, 0.13766233766233765, 0.13896103896103895, 0.13896103896103895, 0.13766233766233765, 0.13896103896103895, 0.13896103896103895, 0.13766233766233765, 0.14025974025974025, 0.14025974025974025, 0.14025974025974025, 0.14025974025974025, 0.14285714285714285, 0.14805194805194805, 0.14935064935064934, 0.15324675324675324, 0.15584415584415584, 0.45064935064935063, 0.45194805194805193, 0.5662337662337662, 0.6857142857142857, 0.7181818181818181, 0.7324675324675325, 0.7558441558441559, 0.8272727272727273, 0.8415584415584415, 0.874025974025974, 0.9233766233766234, 0.9142857142857143, 0.8558441558441559, 0.8376623376623377, 0.8168831168831169, 0.7428571428571429, 0.7233766233766233, 0.712987012987013, 0.6766233766233766, 0.5233766233766234, 0.35844155844155845, 0.19090909090909092, 0.15974025974025974, 0.14675324675324675, 0.14415584415584415, 0.14415584415584415, 0.14415584415584415, 0.14415584415584415, 0.14545454545454545, 0.14675324675324675, 0.14675324675324675, 0.14675324675324675, 0.14935064935064934, 0.15064935064935064, 0.8987012987012987, 0.2025974025974026, 0.16103896103896104, 0.15714285714285714, 0.15454545454545454, 0.15454545454545454, 0.15454545454545454, 0.15584415584415584, 0.861038961038961, 0.9428571428571428, 0.8987012987012987, 0.7805194805194805, 0.15974025974025974, 0.17402597402597403, 0.17142857142857143, 0.16103896103896104, 0.15974025974025974, 0.15844155844155844, 0.15844155844155844, 0.15844155844155844, 0.15844155844155844, 0.15844155844155844, 0.17792207792207793, 0.16493506493506493, 0.16363636363636364, 0.16623376623376623, 0.16493506493506493, 0.16883116883116883, 0.16493506493506493, 0.16753246753246753, 0.16753246753246753, 0.17922077922077922, 0.1961038961038961, 0.21168831168831168, 0.21818181818181817, 0.22337662337662337, 0.24025974025974026, 0.2818181818181818, 0.5454545454545454], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Glyco_hydro_36N.gap.json b/pfam_gap_rates/Glyco_hydro_36N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..22bcea4b04f5422d1ae6cf007f10a2ff806dc98f
--- /dev/null
+++ b/pfam_gap_rates/Glyco_hydro_36N.gap.json
@@ -0,0 +1 @@
+{"family": "Glyco_hydro_36N", "n_seqs": 670, "length": 276, "gap_rates": [0.5805970149253732, 0.27313432835820894, 0.16119402985074627, 0.14477611940298507, 0.13582089552238805, 0.1328358208955224, 0.13134328358208955, 0.13134328358208955, 0.13134328358208955, 0.13134328358208955, 0.13134328358208955, 0.13134328358208955, 0.31791044776119404, 0.34776119402985073, 0.34776119402985073, 0.44477611940298506, 0.5358208955223881, 0.7104477611940299, 0.9298507462686567, 0.8626865671641791, 0.5776119402985075, 0.4791044776119403, 0.43134328358208956, 0.29850746268656714, 0.491044776119403, 0.46119402985074626, 0.3850746268656716, 0.2701492537313433, 0.22238805970149253, 0.1701492537313433, 0.1582089552238806, 0.15970149253731344, 0.1626865671641791, 0.24776119402985075, 0.2671641791044776, 0.564179104477612, 0.4925373134328358, 0.43134328358208956, 0.2746268656716418, 0.21641791044776118, 0.2507462686567164, 0.30597014925373134, 0.21194029850746268, 0.17164179104477612, 0.8626865671641791, 0.8880597014925373, 0.9373134328358209, 0.9417910447761194, 0.9343283582089552, 0.8835820895522388, 0.8567164179104477, 0.12686567164179105, 0.1208955223880597, 0.11641791044776119, 0.11194029850746269, 0.2462686567164179, 0.2253731343283582, 0.19701492537313434, 0.18507462686567164, 0.15223880597014924, 0.14776119402985075, 0.06119402985074627, 0.05970149253731343, 0.05970149253731343, 0.05970149253731343, 0.05970149253731343, 0.056716417910447764, 0.05522388059701493, 0.05522388059701493, 0.05522388059701493, 0.05522388059701493, 0.05373134328358209, 0.05373134328358209, 0.05373134328358209, 0.05373134328358209, 0.05373134328358209, 0.05373134328358209, 0.05373134328358209, 0.05373134328358209, 0.14776119402985075, 0.06119402985074627, 0.056716417910447764, 0.8507462686567164, 0.05223880597014925, 0.05522388059701493, 0.05223880597014925, 0.04477611940298507, 0.04477611940298507, 0.04328358208955224, 0.04029850746268657, 0.03880597014925373, 0.04328358208955224, 0.041791044776119404, 0.04029850746268657, 0.04328358208955224, 0.050746268656716415, 0.09701492537313433, 0.1626865671641791, 0.16716417910447762, 0.30149253731343284, 0.33432835820895523, 0.4134328358208955, 0.40746268656716417, 0.39850746268656717, 0.4014925373134328, 0.408955223880597, 0.4, 0.4014925373134328, 0.3925373134328358, 0.3970149253731343, 0.3895522388059702, 0.35074626865671643, 0.4537313432835821, 0.6850746268656717, 0.4208955223880597, 0.26119402985074625, 0.15970149253731344, 0.04477611940298507, 0.03134328358208955, 0.03134328358208955, 0.028358208955223882, 0.028358208955223882, 0.026865671641791045, 0.025373134328358207, 0.025373134328358207, 0.028358208955223882, 0.03134328358208955, 0.03880597014925373, 0.029850746268656716, 0.025373134328358207, 0.022388059701492536, 0.022388059701492536, 0.022388059701492536, 0.020895522388059702, 0.019402985074626865, 0.019402985074626865, 0.019402985074626865, 0.020895522388059702, 0.020895522388059702, 0.19850746268656716, 0.03283582089552239, 0.026865671641791045, 0.025373134328358207, 0.020895522388059702, 0.01791044776119403, 0.01791044776119403, 0.014925373134328358, 0.014925373134328358, 0.014925373134328358, 0.016417910447761194, 0.016417910447761194, 0.016417910447761194, 0.016417910447761194, 0.019402985074626865, 0.04626865671641791, 0.04328358208955224, 0.020895522388059702, 0.025373134328358207, 0.03134328358208955, 0.023880597014925373, 0.020895522388059702, 0.019402985074626865, 0.01791044776119403, 0.019402985074626865, 0.019402985074626865, 0.023880597014925373, 0.01791044776119403, 0.016417910447761194, 0.2, 0.016417910447761194, 0.01791044776119403, 0.019402985074626865, 0.020895522388059702, 0.8611940298507462, 0.029850746268656716, 0.023880597014925373, 0.020895522388059702, 0.08208955223880597, 0.020895522388059702, 0.020895522388059702, 0.020895522388059702, 0.019402985074626865, 0.019402985074626865, 0.019402985074626865, 0.019402985074626865, 0.019402985074626865, 0.019402985074626865, 0.020895522388059702, 0.020895522388059702, 0.020895522388059702, 0.020895522388059702, 0.020895522388059702, 0.020895522388059702, 0.020895522388059702, 0.020895522388059702, 0.020895522388059702, 0.022388059701492536, 0.025373134328358207, 0.029850746268656716, 0.029850746268656716, 0.03134328358208955, 0.03283582089552239, 0.03283582089552239, 0.03283582089552239, 0.03283582089552239, 0.03283582089552239, 0.03283582089552239, 0.03134328358208955, 0.03134328358208955, 0.029850746268656716, 0.9104477611940298, 0.03134328358208955, 0.04029850746268657, 0.029850746268656716, 0.029850746268656716, 0.029850746268656716, 0.029850746268656716, 0.028358208955223882, 0.028358208955223882, 0.028358208955223882, 0.029850746268656716, 0.028358208955223882, 0.028358208955223882, 0.03582089552238806, 0.9074626865671642, 0.03731343283582089, 0.03582089552238806, 0.03283582089552239, 0.05373134328358209, 0.05223880597014925, 0.049253731343283584, 0.04776119402985075, 0.041791044776119404, 0.03731343283582089, 0.03283582089552239, 0.029850746268656716, 0.029850746268656716, 0.029850746268656716, 0.026865671641791045, 0.026865671641791045, 0.026865671641791045, 0.028358208955223882, 0.028358208955223882, 0.028358208955223882, 0.028358208955223882, 0.028358208955223882, 0.028358208955223882, 0.028358208955223882, 0.028358208955223882, 0.028358208955223882, 0.029850746268656716, 0.03134328358208955, 0.03283582089552239, 0.03283582089552239, 0.034328358208955224, 0.03582089552238806, 0.03582089552238806, 0.03582089552238806, 0.21044776119402986, 0.04328358208955224, 0.04328358208955224, 0.04477611940298507, 0.049253731343283584, 0.058208955223880594, 0.10298507462686567, 0.11194029850746269, 0.11194029850746269, 0.11641791044776119, 0.12388059701492538, 0.12835820895522387, 0.1373134328358209, 0.8701492537313433, 0.15671641791044777, 0.18059701492537314, 0.2044776119402985, 0.5014925373134328], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Glyco_hydro_38.gap.json b/pfam_gap_rates/Glyco_hydro_38.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..3602d88671c57c47e58032aaaef24b6b51d87ebd
--- /dev/null
+++ b/pfam_gap_rates/Glyco_hydro_38.gap.json
@@ -0,0 +1 @@
+{"family": "Glyco_hydro_38", "n_seqs": 1618, "length": 359, "gap_rates": [0.5383189122373301, 0.21199011124845488, 0.15698393077873918, 0.13411619283065512, 0.13102595797280595, 0.12793572311495674, 0.12793572311495674, 0.12546353522867737, 0.12484548825710753, 0.12299134734239803, 0.12360939431396786, 0.11990111248454882, 0.11928306551297899, 0.11928306551297899, 0.1180469715698393, 0.1180469715698393, 0.11742892459826947, 0.11681087762669963, 0.11495673671199011, 0.11310259579728059, 0.11186650185414092, 0.8139678615574784, 0.8337453646477132, 0.8374536464771323, 0.8430160692212608, 0.8417799752781211, 0.8355995055624228, 0.818912237330037, 0.8139678615574784, 0.6143386897404203, 0.11186650185414092, 0.10815822002472188, 0.10754017305315204, 0.1069221260815822, 0.10754017305315204, 0.10568603213844252, 0.10568603213844252, 0.10321384425216316, 0.10135970333745364, 0.10135970333745364, 0.09950556242274412, 0.09703337453646477, 0.09641532756489493, 0.09456118665018541, 0.09517923362175525, 0.09641532756489493, 0.09456118665018541, 0.09332509270704574, 0.09517923362175525, 0.09270704573547589, 0.09332509270704574, 0.09332509270704574, 0.09394313967861558, 0.9066749072929543, 0.09517923362175525, 0.09208899876390605, 0.09208899876390605, 0.09332509270704574, 0.09147095179233622, 0.09332509270704574, 0.0896168108776267, 0.08838071693448703, 0.08838071693448703, 0.08838071693448703, 0.08714462299134734, 0.08776266996291718, 0.08838071693448703, 0.08776266996291718, 0.08838071693448703, 0.08899876390605686, 0.08714462299134734, 0.08776266996291718, 0.08838071693448703, 0.08281829419035847, 0.0834363411619283, 0.08034610630407911, 0.6025957972805933, 0.08034610630407911, 0.07849196538936959, 0.07972805933250927, 0.07911001236093942, 0.07787391841779975, 0.07849196538936959, 0.07849196538936959, 0.08034610630407911, 0.08034610630407911, 0.08096415327564895, 0.08034610630407911, 0.21569839307787392, 0.09147095179233622, 0.0834363411619283, 0.0815822002472188, 0.08034610630407911, 0.08096415327564895, 0.07787391841779975, 0.07849196538936959, 0.08220024721878863, 0.08281829419035847, 0.0865265760197775, 0.08405438813349815, 0.08096415327564895, 0.08034610630407911, 0.08096415327564895, 0.08281829419035847, 0.08281829419035847, 0.08405438813349815, 0.08034610630407911, 0.08096415327564895, 0.07972805933250927, 0.07601977750309023, 0.07601977750309023, 0.07354758961681088, 0.07354758961681088, 0.07478368355995056, 0.07911001236093942, 0.17058096415327564, 0.09085290482076638, 0.08096415327564895, 0.0815822002472188, 0.0815822002472188, 0.08096415327564895, 0.08096415327564895, 0.88442521631644, 0.8658838071693449, 0.08405438813349815, 0.08590852904820766, 0.08096415327564895, 0.08096415327564895, 0.08034610630407911, 0.07972805933250927, 0.08096415327564895, 0.08096415327564895, 0.08034610630407911, 0.0815822002472188, 0.08034610630407911, 0.08034610630407911, 0.08096415327564895, 0.08034610630407911, 0.08096415327564895, 0.08096415327564895, 0.0815822002472188, 0.08096415327564895, 0.0815822002472188, 0.0815822002472188, 0.0815822002472188, 0.0815822002472188, 0.0834363411619283, 0.9338689740420272, 0.08467243510506799, 0.08096415327564895, 0.08281829419035847, 0.08281829419035847, 0.08405438813349815, 0.08405438813349815, 0.08529048207663782, 0.08590852904820766, 0.08529048207663782, 0.08590852904820766, 0.08838071693448703, 0.09332509270704574, 0.09826946847960445, 0.10630407911001236, 0.10877626699629171, 0.11186650185414092, 0.11557478368355995, 0.11372064276885044, 0.18479604449938195, 0.16563658838071693, 0.5723114956736712, 0.9363411619283065, 0.9443757725587144, 0.9480840543881335, 0.9406674907292955, 0.9351050679851669, 0.5556242274412856, 0.5370828182941904, 0.138442521631644, 0.11248454882571075, 0.10630407911001236, 0.09826946847960445, 0.09517923362175525, 0.09394313967861558, 0.09456118665018541, 0.09394313967861558, 0.09394313967861558, 0.09517923362175525, 0.09456118665018541, 0.09208899876390605, 0.6662546353522868, 0.7138442521631644, 0.9215080346106304, 0.6823238566131026, 0.6514215080346106, 0.09270704573547589, 0.09332509270704574, 0.09456118665018541, 0.09641532756489493, 0.09703337453646477, 0.09703337453646477, 0.0957972805933251, 0.09765142150803462, 0.09826946847960445, 0.14029666254635353, 0.1810877626699629, 0.4419035846724351, 0.4134734239802225, 0.49876390605686033, 0.765142150803461, 0.7867737948084055, 0.8145859085290482, 0.8467243510506799, 0.8250927070457355, 0.8022249690976514, 0.776885043263288, 0.7484548825710754, 0.4932014833127318, 0.3720642768850433, 0.23300370828182942, 0.188504326328801, 0.17119901112484548, 0.16872682323856614, 0.173053152039555, 0.6093943139678616, 0.6069221260815822, 0.595797280593325, 0.542027194066749, 0.6260815822002472, 0.642150803461063, 0.6495673671199012, 0.6631644004944376, 0.6804697156983931, 0.703955500618047, 0.8331273176761433, 0.8702101359703337, 0.8955500618046972, 0.9493201483312732, 0.892459826946848, 0.84610630407911, 0.823238566131026, 0.6897404202719407, 0.6681087762669963, 0.6569839307787392, 0.6452410383189122, 0.6328800988875154, 0.6180469715698393, 0.48763906056860323, 0.46786155747836833, 0.446229913473424, 0.42830655129789863, 0.4072929542645241, 0.3912237330037083, 0.12360939431396786, 0.11433868974042027, 0.1100123609394314, 0.10939431396786156, 0.11186650185414092, 0.11186650185414092, 0.11310259579728059, 0.11248454882571075, 0.11495673671199011, 0.11866501854140915, 0.1211372064276885, 0.12237330037082818, 0.11866501854140915, 0.11866501854140915, 0.1211372064276885, 0.1180469715698393, 0.11495673671199011, 0.12546353522867737, 0.1180469715698393, 0.11372064276885044, 0.11186650185414092, 0.1100123609394314, 0.10877626699629171, 0.10815822002472188, 0.1069221260815822, 0.10630407911001236, 0.1069221260815822, 0.1069221260815822, 0.6100123609394313, 0.6353522867737948, 0.6409147095179234, 0.8689740420271941, 0.8702101359703337, 0.8677379480840544, 0.6396786155747837, 0.630407911001236, 0.588380716934487, 0.2058096415327565, 0.20148331273176762, 0.14215080346106304, 0.11557478368355995, 0.11495673671199011, 0.11433868974042027, 0.11495673671199011, 0.1161928306551298, 0.11681087762669963, 0.11557478368355995, 0.11495673671199011, 0.1161928306551298, 0.11681087762669963, 0.11681087762669963, 0.11742892459826947, 0.3868974042027194, 0.2620519159456119, 0.23176761433868975, 0.207663782447466, 0.9215080346106304, 0.19530284301606923, 0.1823238566131026, 0.9066749072929543, 0.9208899876390606, 0.9110012360939431, 0.9017305315203955, 0.18665018541409148, 0.14215080346106304, 0.13597033374536466, 0.13597033374536466, 0.1365883807169345, 0.13720642768850433, 0.138442521631644, 0.138442521631644, 0.13967861557478367, 0.13906056860321384, 0.927070457354759, 0.13967861557478367, 0.14029666254635353, 0.1415327564894932, 0.14276885043263288, 0.1446229913473424, 0.14709517923362175, 0.15203955500618047, 0.15389369592089, 0.157601977750309, 0.3825710754017305, 0.8430160692212608, 0.88442521631644, 0.9400494437577256, 0.9456118665018541, 0.9431396786155748, 0.9369592088998764, 0.8702101359703337, 0.8213844252163165, 0.4777503090234858, 0.5018541409147095, 0.49443757725587145, 0.5030902348578492, 0.44932014833127315, 0.45920889987639063, 0.4796044499381953, 0.8220024721878862, 0.4641532756489493, 0.46909765142150806, 0.4715698393077874, 0.4758961681087763, 0.4907292954264524, 0.5049443757725587, 0.5197775030902348, 0.7317676143386898], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Glyco_hydro_57.gap.json b/pfam_gap_rates/Glyco_hydro_57.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e6bd7571cb801d724a3244440e77da0a0a46c491
--- /dev/null
+++ b/pfam_gap_rates/Glyco_hydro_57.gap.json
@@ -0,0 +1 @@
+{"family": "Glyco_hydro_57", "n_seqs": 973, "length": 524, "gap_rates": [0.7564234326824255, 0.40596094552929085, 0.36793422404933196, 0.35765673175745116, 0.35354573484069884, 0.35149023638232274, 0.3494347379239466, 0.3473792394655704, 0.3473792394655704, 0.36793422404933196, 0.40596094552929085, 0.3607399794450154, 0.3597122302158273, 0.35251798561151076, 0.3494347379239466, 0.7821171634121274, 0.8016443987667009, 0.8314491264131552, 0.8725590955806783, 0.8150051387461459, 0.7913669064748201, 0.6813977389516958, 0.38437821171634123, 0.4789311408016444, 0.447070914696814, 0.42754367934224047, 0.43268242548818087, 0.4316546762589928, 0.5405960945529291, 0.4984583761562179, 0.48715313463514903, 0.4830421377183967, 0.4779033915724563, 0.37410071942446044, 0.8119218910585817, 0.8396711202466598, 0.8602261048304214, 0.868448098663926, 0.8972250770811921, 0.9085303186022611, 0.8890030832476875, 0.8653648509763617, 0.8591983556012333, 0.8376156217882836, 0.7995889003083247, 0.2641315519013361, 0.2538540596094553, 0.2517985611510791, 0.24871531346351491, 0.24871531346351491, 0.24768756423432683, 0.24563206577595068, 0.24563206577595068, 0.24357656731757452, 0.24357656731757452, 0.24357656731757452, 0.24357656731757452, 0.24357656731757452, 0.24357656731757452, 0.24357656731757452, 0.2446043165467626, 0.2692702980472765, 0.5847893114080165, 0.5971223021582733, 0.881808838643371, 0.5940390544707091, 0.566289825282631, 0.24254881808838644, 0.2394655704008222, 0.23638232271325796, 0.23535457348406988, 0.23329907502569372, 0.23329907502569372, 0.23329907502569372, 0.23329907502569372, 0.23227132579650564, 0.23227132579650564, 0.23227132579650564, 0.2312435765673176, 0.2312435765673176, 0.2302158273381295, 0.22918807810894143, 0.2312435765673176, 0.22816032887975335, 0.22918807810894143, 0.2302158273381295, 0.249743062692703, 0.24768756423432683, 0.24152106885919836, 0.645426515930113, 0.6135662898252826, 0.5899280575539568, 0.5878725590955807, 0.5847893114080165, 0.5837615621788284, 0.5868448098663926, 0.5858170606372045, 0.5827338129496403, 0.7615621788283659, 0.7173689619732785, 0.5868448098663926, 0.5899280575539568, 0.593011305241521, 0.5858170606372045, 0.579650565262076, 0.5817060637204522, 0.5827338129496403, 0.5837615621788284, 0.5817060637204522, 0.671120246659815, 0.5806783144912642, 0.5868448098663926, 0.5868448098663926, 0.5889003083247688, 0.5858170606372045, 0.5847893114080165, 0.5847893114080165, 0.5704008221993834, 0.7574511819116135, 0.7944501541623844, 0.8098663926002055, 0.817060637204522, 0.828365878725591, 0.8324768756423433, 0.8355601233299075, 0.8406988694758479, 0.8427543679342241, 0.8437821171634121, 0.8458376156217883, 0.8458376156217883, 0.8478931140801644, 0.8499486125385406, 0.8509763617677287, 0.8509763617677287, 0.8530318602261048, 0.8530318602261048, 0.8530318602261048, 0.8530318602261048, 0.8530318602261048, 0.8530318602261048, 0.8530318602261048, 0.8530318602261048, 0.8530318602261048, 0.8530318602261048, 0.8530318602261048, 0.8530318602261048, 0.8550873586844809, 0.8550873586844809, 0.8612538540596094, 0.8622816032887975, 0.869475847893114, 0.8746145940390545, 0.8756423432682425, 0.9239465570400822, 0.9362795477903392, 0.9424460431654677, 0.9280575539568345, 0.9126413155190134, 0.8746145940390545, 0.8715313463514902, 0.8653648509763617, 0.8612538540596094, 0.8571428571428571, 0.8550873586844809, 0.8530318602261048, 0.8530318602261048, 0.8530318602261048, 0.8530318602261048, 0.8530318602261048, 0.8530318602261048, 0.8530318602261048, 0.8530318602261048, 0.8530318602261048, 0.8530318602261048, 0.8530318602261048, 0.8530318602261048, 0.8509763617677287, 0.8509763617677287, 0.8509763617677287, 0.8499486125385406, 0.8478931140801644, 0.8458376156217883, 0.8437821171634121, 0.8437821171634121, 0.8406988694758479, 0.8396711202466598, 0.8324768756423433, 0.829393627954779, 0.8211716341212744, 0.8139773895169579, 0.8078108941418294, 0.7831449126413155, 0.6505652620760535, 0.5601233299075026, 0.5673175745118191, 0.5673175745118191, 0.5652620760534429, 0.5652620760534429, 0.5601233299075026, 0.5549845837615622, 0.5580678314491264, 0.5590955806783144, 0.5580678314491264, 0.5549845837615622, 0.5539568345323741, 0.5539568345323741, 0.5477903391572456, 0.5405960945529291, 0.5282631038026722, 0.5241521068859198, 0.499486125385406, 0.4727646454265159, 0.45940390544707094, 0.43268242548818087, 0.1695786228160329, 0.16649537512846865, 0.16135662898252826, 0.15724563206577596, 0.15621788283658788, 0.1500513874614594, 0.1397738951695786, 0.1366906474820144, 0.13566289825282632, 0.11510791366906475, 0.09455292908530319, 0.08941418293936279, 0.08324768756423433, 0.0750256937307297, 0.06680369989722508, 0.02672147995889003, 0.020554984583761562, 0.019527235354573486, 0.019527235354573486, 0.017471736896197326, 0.017471736896197326, 0.017471736896197326, 0.01644398766700925, 0.015416238437821172, 0.015416238437821172, 0.015416238437821172, 0.015416238437821172, 0.017471736896197326, 0.01644398766700925, 0.017471736896197326, 0.8324768756423433, 0.8489208633093526, 0.8571428571428571, 0.8591983556012333, 0.8591983556012333, 0.8612538540596094, 0.8612538540596094, 0.8622816032887975, 0.8622816032887975, 0.881808838643371, 0.8622816032887975, 0.8622816032887975, 0.8612538540596094, 0.8612538540596094, 0.8602261048304214, 0.8591983556012333, 0.8571428571428571, 0.8561151079136691, 0.8365878725590956, 0.65775950668037, 0.5642343268242549, 0.023638232271325797, 0.023638232271325797, 0.01644398766700925, 0.01644398766700925, 0.01644398766700925, 0.015416238437821172, 0.019527235354573486, 0.015416238437821172, 0.015416238437821172, 0.015416238437821172, 0.015416238437821172, 0.015416238437821172, 0.014388489208633094, 0.014388489208633094, 0.014388489208633094, 0.014388489208633094, 0.020554984583761562, 0.014388489208633094, 0.015416238437821172, 0.9290853031860226, 0.8961973278520041, 0.014388489208633094, 0.013360739979445015, 0.013360739979445015, 0.013360739979445015, 0.012332990750256937, 0.012332990750256937, 0.012332990750256937, 0.012332990750256937, 0.013360739979445015, 0.013360739979445015, 0.013360739979445015, 0.013360739979445015, 0.013360739979445015, 0.014388489208633094, 0.014388489208633094, 0.014388489208633094, 0.015416238437821172, 0.015416238437821172, 0.015416238437821172, 0.015416238437821172, 0.015416238437821172, 0.017471736896197326, 0.017471736896197326, 0.019527235354573486, 0.02158273381294964, 0.020554984583761562, 0.01644398766700925, 0.01644398766700925, 0.01644398766700925, 0.017471736896197326, 0.017471736896197326, 0.017471736896197326, 0.023638232271325797, 0.024665981500513873, 0.025693730729701953, 0.025693730729701953, 0.6269270298047277, 0.6865364850976362, 0.7225077081192189, 0.7430626927029804, 0.763617677286742, 0.816032887975334, 0.8869475847893115, 0.9311408016443987, 0.9373072970195272, 0.9403905447070915, 0.9362795477903392, 0.9249743062692704, 0.8746145940390545, 0.789311408016444, 0.7533401849948612, 0.7307297019527236, 0.697841726618705, 0.6649537512846866, 0.5323741007194245, 0.08324768756423433, 0.09660842754367935, 0.0698869475847893, 0.07399794450154162, 0.06885919835560124, 0.065775950668037, 0.1223021582733813, 0.10483042137718397, 0.09969167523124357, 0.08016443987667009, 0.08016443987667009, 0.2641315519013361, 0.43884892086330934, 0.43371017471736895, 0.40698869475847893, 0.32990750256937307, 0.2589928057553957, 0.2795477903391572, 0.2394655704008222, 0.17163412127440905, 0.11819116135662898, 0.08838643371017471, 0.3186022610483042, 0.06885919835560124, 0.06269270298047276, 0.06063720452209661, 0.06166495375128469, 0.07605344295991778, 0.07913669064748201, 0.07605344295991778, 0.07605344295991778, 0.0750256937307297, 0.0750256937307297, 0.07605344295991778, 0.07708119218910586, 0.08119218910585817, 0.08119218910585817, 0.08838643371017471, 0.09044193216855087, 0.09044193216855087, 0.1778006166495375, 0.5159301130524152, 0.5056526207605344, 0.5005138746145941, 0.4830421377183967, 0.38437821171634123, 0.36279547790339156, 0.3566289825282631, 0.11202466598150052, 0.09558067831449127, 0.09352517985611511, 0.09660842754367935, 0.09660842754367935, 0.09558067831449127, 0.9496402877697842, 0.9496402877697842, 0.9496402877697842, 0.9496402877697842, 0.9496402877697842, 0.9496402877697842, 0.9496402877697842, 0.11099691675231244, 0.12024665981500514, 0.12332990750256938, 0.1510791366906475, 0.5590955806783144, 0.6022610483042138, 0.5056526207605344, 0.5714285714285714, 0.3751284686536485, 0.3062692702980473, 0.23843782117163412, 0.19527235354573483, 0.16649537512846865, 0.15416238437821173, 0.14799588900308325, 0.9321685508735869, 0.9280575539568345, 0.14285714285714285, 0.12744090441932168, 0.12744090441932168, 0.12538540596094552, 0.13052415210688592, 0.13874614594039056, 0.13771839671120248, 0.13463514902363824, 0.12744090441932168, 0.12332990750256938, 0.11819116135662898, 0.11408016443987667, 0.11408016443987667, 0.11819116135662898, 0.12024665981500514, 0.4881808838643371, 0.8232271325796505, 0.868448098663926, 0.8550873586844809, 0.7009249743062693, 0.14182939362795477, 0.13463514902363824, 0.1223021582733813, 0.12538540596094552, 0.12435765673175746, 0.12538540596094552, 0.13052415210688592, 0.13463514902363824, 0.144912641315519, 0.15210688591983557, 0.16135662898252826, 0.16649537512846865, 0.17060637204522097, 0.16649537512846865, 0.16546762589928057, 0.16341212744090441, 0.4028776978417266, 0.3997944501541624, 0.3802672147995889, 0.2199383350462487, 0.21068859198355602, 0.21274409044193218, 0.20966084275436794, 0.2970195272353546, 0.30935251798561153, 0.42034943473792397, 0.21788283658787255, 0.21891058581706063, 0.2014388489208633, 0.20041109969167523, 0.20863309352517986, 0.20554984583761562, 0.2014388489208633, 0.8478931140801644, 0.789311408016444, 0.19938335046248715, 0.20041109969167523, 0.19938335046248715, 0.19835560123329907, 0.19938335046248715, 0.2528263103802672, 0.24254881808838644, 0.2312435765673176, 0.22918807810894143, 0.2209660842754368, 0.21788283658787255, 0.2199383350462487, 0.21891058581706063, 0.27852004110996914, 0.26618705035971224, 0.25488180883864336, 0.26104830421377184, 0.39671120246659813, 0.5950668036998972, 0.6803699897225077, 0.6608427543679343, 0.39671120246659813, 0.28879753340184994, 0.2795477903391572, 0.2816032887975334, 0.46557040082219936, 0.9434737923946557, 0.947584789311408, 0.9434737923946557, 0.7923946557040082, 0.36382322713257964, 0.3997944501541624, 0.4779033915724563, 0.48098663926002055, 0.4840698869475848, 0.4892086330935252, 0.49229188078108943, 0.5375128468653648, 0.5601233299075026, 0.5817060637204522, 0.5971223021582733, 0.605344295991778, 0.6145940390544707, 0.6269270298047277, 0.6433710174717369, 0.644398766700925, 0.6649537512846866, 0.6875642343268242, 0.7317574511819116, 0.8540596094552929], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Glyco_hydro_76.gap.json b/pfam_gap_rates/Glyco_hydro_76.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e586eb6a712dddc442f9fa518a5b096a579f49d5
--- /dev/null
+++ b/pfam_gap_rates/Glyco_hydro_76.gap.json
@@ -0,0 +1 @@
+{"family": "Glyco_hydro_76", "n_seqs": 982, "length": 434, "gap_rates": [0.7158859470468432, 0.6120162932790224, 0.5885947046843177, 0.5468431771894093, 0.5142566191446029, 0.4969450101832994, 0.4816700610997963, 0.4725050916496945, 0.4531568228105906, 0.439918533604888, 0.43890020366598775, 0.43075356415478616, 0.42057026476578413, 0.4124236252545825, 0.9429735234215886, 0.4063136456211813, 0.40325865580448067, 0.40224032586558045, 0.40325865580448067, 0.3981670061099796, 0.3971486761710794, 0.5040733197556008, 0.4684317718940937, 0.42973523421588594, 0.9154786150712831, 0.9358452138492872, 0.9103869653767821, 0.40325865580448067, 0.3879837067209776, 0.3411405295315682, 0.33095723014256617, 0.32484725050916496, 0.319755600814664, 0.33095723014256617, 0.31568228105906315, 0.3095723014256619, 0.8187372708757638, 0.840122199592668, 0.9093686354378818, 0.9205702647657841, 0.8492871690427699, 0.8370672097759674, 0.790224032586558, 0.4154786150712831, 0.32790224032586557, 0.2505091649694501, 0.2454175152749491, 0.24745417515274948, 0.2494908350305499, 0.32790224032586557, 0.24338085539714868, 0.23421588594704684, 0.23421588594704684, 0.23421588594704684, 0.23421588594704684, 0.23319755600814665, 0.23217922606924643, 0.23217922606924643, 0.23217922606924643, 0.23116089613034624, 0.23116089613034624, 0.23625254582484725, 0.23523421588594703, 0.23217922606924643, 0.25967413441955195, 0.2505091649694501, 0.9429735234215886, 0.9358452138492872, 0.23727087576374745, 0.23319755600814665, 0.23014256619144602, 0.23116089613034624, 0.22912423625254583, 0.23421588594704684, 0.23116089613034624, 0.22810590631364563, 0.27494908350305497, 0.2668024439918534, 0.2505091649694501, 0.23116089613034624, 0.22606924643584522, 0.23217922606924643, 0.23116089613034624, 0.9490835030549898, 0.9439918533604889, 0.24032586558044808, 0.24643584521384929, 0.9256619144602851, 0.3574338085539715, 0.3228105906313646, 0.9368635437881874, 0.2983706720977597, 0.280040733197556, 0.2576374745417515, 0.24338085539714868, 0.24338085539714868, 0.24439918533604887, 0.2820773930753564, 0.2637474541751528, 0.9266802443991853, 0.9114052953156823, 0.2535641547861507, 0.21181262729124237, 0.1894093686354379, 0.18228105906313646, 0.17617107942973523, 0.17515274949083504, 0.17413441955193482, 0.17413441955193482, 0.17413441955193482, 0.17617107942973523, 0.17311608961303462, 0.17311608961303462, 0.1894093686354379, 0.17617107942973523, 0.17311608961303462, 0.1710794297352342, 0.1710794297352342, 0.1710794297352342, 0.17209775967413443, 0.17820773930753564, 0.48676171079429736, 0.46028513238289204, 0.4531568228105906, 0.4531568228105906, 0.45621181262729127, 0.939918533604888, 0.5987780040733197, 0.23116089613034624, 0.20061099796334012, 0.1955193482688391, 0.1924643584521385, 0.18533604887983707, 0.17922606924643583, 0.17209775967413443, 0.15885947046843177, 0.15173116089613034, 0.15376782077393075, 0.15478615071283094, 0.15173116089613034, 0.14663951120162932, 0.1446028513238289, 0.15173116089613034, 0.14765784114052954, 0.1446028513238289, 0.1415478615071283, 0.13441955193482688, 0.9205702647657841, 0.9195519348268839, 0.1395112016293279, 0.9185336048879837, 0.13747454175152748, 0.1395112016293279, 0.1384928716904277, 0.17617107942973523, 0.36863543788187375, 0.9378818737270875, 0.924643584521385, 0.1924643584521385, 0.18533604887983707, 0.12729124236252545, 0.12525458248472504, 0.12321792260692464, 0.12627291242362526, 0.12321792260692464, 0.1354378818737271, 0.159877800407332, 0.5091649694501018, 0.4959266802443992, 0.4786150712830957, 0.4429735234215886, 0.9470468431771895, 0.319755600814664, 0.12830957230142567, 0.12932790224032586, 0.12321792260692464, 0.11812627291242363, 0.1109979633401222, 0.1109979633401222, 0.11303462321792261, 0.1109979633401222, 0.10590631364562118, 0.10488798370672098, 0.10488798370672098, 0.10896130346232179, 0.13136456211812628, 0.13136456211812628, 0.1364562118126273, 0.11608961303462322, 0.1109979633401222, 0.11303462321792261, 0.1120162932790224, 0.1120162932790224, 0.10896130346232179, 0.109979633401222, 0.11914460285132383, 0.12118126272912423, 0.8930753564154786, 0.9348268839103869, 0.9154786150712831, 0.8513238289205702, 0.12321792260692464, 0.11608961303462322, 0.11303462321792261, 0.11710794297352342, 0.1109979633401222, 0.09266802443991853, 0.07535641547861507, 0.062118126272912425, 0.059063136456211814, 0.059063136456211814, 0.059063136456211814, 0.059063136456211814, 0.059063136456211814, 0.062118126272912425, 0.062118126272912425, 0.062118126272912425, 0.062118126272912425, 0.062118126272912425, 0.2209775967413442, 0.1384928716904277, 0.07433808553971487, 0.12016293279022404, 0.9287169042769857, 0.5631364562118126, 0.07841140529531568, 0.06415478615071284, 0.06415478615071284, 0.06517311608961303, 0.06619144602851323, 0.06313645621181263, 0.06313645621181263, 0.062118126272912425, 0.06313645621181263, 0.06619144602851323, 0.3075356415478615, 0.8329938900203666, 0.9073319755600815, 0.9226069246435845, 0.9460285132382892, 0.9419551934826884, 0.9144602851323829, 0.8869653767820774, 0.8095723014256619, 0.17515274949083504, 0.09674134419551934, 0.0845213849287169, 0.0835030549898167, 0.1120162932790224, 0.15071283095723015, 0.11812627291242363, 0.07128309572301425, 0.06517311608961303, 0.06415478615071284, 0.06313645621181263, 0.06924643584521385, 0.062118126272912425, 0.06517311608961303, 0.05804480651731161, 0.059063136456211814, 0.059063136456211814, 0.059063136456211814, 0.059063136456211814, 0.059063136456211814, 0.05804480651731161, 0.05804480651731161, 0.05804480651731161, 0.05804480651731161, 0.05804480651731161, 0.06008146639511202, 0.06008146639511202, 0.06517311608961303, 0.06720977596741344, 0.06517311608961303, 0.06924643584521385, 0.7352342158859471, 0.07230142566191446, 0.07637474541751528, 0.07433808553971487, 0.9276985743380856, 0.9226069246435845, 0.07535641547861507, 0.07331975560081466, 0.07331975560081466, 0.07026476578411406, 0.07026476578411406, 0.07128309572301425, 0.07230142566191446, 0.07331975560081466, 0.07230142566191446, 0.07331975560081466, 0.07331975560081466, 0.07230142566191446, 0.07535641547861507, 0.9256619144602851, 0.8492871690427699, 0.17718940936863545, 0.10183299389002037, 0.09674134419551934, 0.09470468431771895, 0.09063136456211812, 0.09979633401221996, 0.09164969450101833, 0.7637474541751528, 0.8788187372708758, 0.9205702647657841, 0.9266802443991853, 0.9368635437881874, 0.9409368635437881, 0.9327902240325866, 0.9256619144602851, 0.9144602851323829, 0.824847250509165, 0.670061099796334, 0.46334012219959264, 0.13136456211812628, 0.12321792260692464, 0.12423625254582485, 0.1710794297352342, 0.13034623217922606, 0.40835030549898166, 0.2454175152749491, 0.24439918533604887, 0.23217922606924643, 0.20875763747454176, 0.9022403258655805, 0.9378818737270875, 0.8289205702647657, 0.20468431771894094, 0.22912423625254583, 0.2637474541751528, 0.15071283095723015, 0.12729124236252545, 0.12219959266802444, 0.11710794297352342, 0.11507128309572301, 0.11303462321792261, 0.11507128309572301, 0.10590631364562118, 0.10488798370672098, 0.10488798370672098, 0.10488798370672098, 0.10386965376782077, 0.10386965376782077, 0.10488798370672098, 0.10692464358452139, 0.10896130346232179, 0.12016293279022404, 0.12729124236252545, 0.17820773930753564, 0.17617107942973523, 0.159877800407332, 0.15274949083503056, 0.15784114052953158, 0.18839103869653767, 0.8940936863543788, 0.19959266802443992, 0.20061099796334012, 0.20264765784114053, 0.24643584521384929, 0.23217922606924643, 0.18635437881873726, 0.18839103869653767, 0.1945010183299389, 0.1924643584521385, 0.1894093686354379, 0.19144602851323828, 0.19144602851323828, 0.19653767820773932, 0.19959266802443992, 0.20468431771894094, 0.20570264765784113, 0.20977596741344195, 0.20977596741344195, 0.9358452138492872, 0.225050916496945, 0.23523421588594703, 0.23421588594704684, 0.23930753564154786, 0.2668024439918534, 0.9419551934826884, 0.9429735234215886, 0.9470468431771895, 0.945010183299389, 0.9429735234215886, 0.929735234215886, 0.46435845213849286, 0.44908350305498984, 0.31771894093686354, 0.2892057026476578, 0.28105906313645623, 0.29633401221995925, 0.27494908350305497, 0.2769857433808554, 0.2769857433808554, 0.2729124236252546, 0.2729124236252546, 0.27494908350305497, 0.3574338085539715, 0.319755600814664, 0.3360488798370672, 0.9480651731160896, 0.924643584521385, 0.3645621181262729, 0.3574338085539715, 0.3513238289205703, 0.35539714867617106, 0.3615071283095723, 0.4317718940936864, 0.3869653767820774, 0.37067209775967414, 0.3696537678207739, 0.3727087576374745, 0.37474541751527496, 0.38085539714867617, 0.38391038696537677, 0.395112016293279, 0.40325865580448067, 0.42973523421588594, 0.4439918533604888, 0.46435845213849286, 0.48676171079429736, 0.5112016293279023, 0.5285132382892057, 0.5509164969450102, 0.570264765784114, 0.5855397148676171, 0.6221995926680245, 0.6425661914460286, 0.659877800407332, 0.6792260692464358, 0.6914460285132383, 0.7189409368635438, 0.7993890020366599], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Glyco_trans_1_2.gap.json b/pfam_gap_rates/Glyco_trans_1_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..cfa508c4f5007d17ed972e6935723dc3e4614dcf
--- /dev/null
+++ b/pfam_gap_rates/Glyco_trans_1_2.gap.json
@@ -0,0 +1 @@
+{"family": "Glyco_trans_1_2", "n_seqs": 1111, "length": 110, "gap_rates": [0.8172817281728173, 0.6246624662466247, 0.5445544554455446, 0.5211521152115212, 0.936993699369937, 0.9108910891089109, 0.4815481548154815, 0.45814581458145814, 0.42304230423042305, 0.34743474347434744, 0.6651665166516652, 0.7596759675967597, 0.810981098109811, 0.9261926192619262, 0.9297929792979298, 0.946894689468947, 0.9450945094509451, 0.927992799279928, 0.9225922592259226, 0.8010801080108011, 0.7011701170117012, 0.6327632763276327, 0.2079207920792079, 0.18091809180918092, 0.1422142214221422, 0.10801080108010801, 0.0747074707470747, 0.046804680468046804, 0.032403240324032405, 0.025202520252025202, 0.021602160216021602, 0.020702070207020702, 0.0153015301530153, 0.0153015301530153, 0.012601260126012601, 0.012601260126012601, 0.012601260126012601, 0.010801080108010801, 0.009900990099009901, 0.009900990099009901, 0.009900990099009901, 0.009000900090009001, 0.052205220522052204, 0.024302430243024302, 0.9252925292529253, 0.8775877587758776, 0.021602160216021602, 0.010801080108010801, 0.0072007200720072, 0.0054005400540054005, 0.0054005400540054005, 0.0054005400540054005, 0.013501350135013501, 0.0846084608460846, 0.0774077407740774, 0.0153015301530153, 0.1476147614761476, 0.0297029702970297, 0.0063006300630063005, 0.0063006300630063005, 0.0054005400540054005, 0.008100810081008101, 0.023402340234023402, 0.8721872187218722, 0.7812781278127813, 0.0072007200720072, 0.0153015301530153, 0.0054005400540054005, 0.004500450045004501, 0.0054005400540054005, 0.004500450045004501, 0.0027002700270027003, 0.0027002700270027003, 0.0027002700270027003, 0.004500450045004501, 0.011701170117011701, 0.026102610261026102, 0.10441044104410441, 0.09450945094509451, 0.012601260126012601, 0.009900990099009901, 0.0072007200720072, 0.0054005400540054005, 0.008100810081008101, 0.0072007200720072, 0.009000900090009001, 0.009900990099009901, 0.009900990099009901, 0.010801080108010801, 0.0063006300630063005, 0.0063006300630063005, 0.0063006300630063005, 0.009000900090009001, 0.010801080108010801, 0.034203420342034205, 0.0297029702970297, 0.0351035103510351, 0.036003600360036005, 0.043204320432043204, 0.054005400540054004, 0.05850585058505851, 0.06840684068406841, 0.0819081908190819, 0.09540954095409541, 0.10981098109810981, 0.1251125112511251, 0.162016201620162, 0.2232223222322232, 0.40234023402340235, 0.8433843384338434], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Glyco_trans_1_4.gap.json b/pfam_gap_rates/Glyco_trans_1_4.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..1715514dea7a07e74a31e8c10335dafc5da8e715
--- /dev/null
+++ b/pfam_gap_rates/Glyco_trans_1_4.gap.json
@@ -0,0 +1 @@
+{"family": "Glyco_trans_1_4", "n_seqs": 5000, "length": 177, "gap_rates": [0.6226, 0.3034, 0.2112, 0.1768, 0.1658, 0.1574, 0.1528, 0.15, 0.1484, 0.8456, 0.5172, 0.2446, 0.84, 0.161, 0.2332, 0.1152, 0.1086, 0.1052, 0.1004, 0.0954, 0.0878, 0.0818, 0.0798, 0.0772, 0.0764, 0.7592, 0.0698, 0.067, 0.0638, 0.0632, 0.2244, 0.1676, 0.823, 0.5138, 0.1274, 0.803, 0.9292, 0.5236, 0.0722, 0.0558, 0.0466, 0.0254, 0.0252, 0.025, 0.0248, 0.1178, 0.077, 0.1868, 0.935, 0.498, 0.0844, 0.2882, 0.8722, 0.936, 0.948, 0.8978, 0.848, 0.2862, 0.0448, 0.0326, 0.0524, 0.21, 0.1116, 0.0922, 0.1938, 0.6408, 0.938, 0.5506, 0.2298, 0.2744, 0.3424, 0.0566, 0.0236, 0.9464, 0.0124, 0.01, 0.0092, 0.0078, 0.0074, 0.0116, 0.0072, 0.4502, 0.9218, 0.3846, 0.0386, 0.0056, 0.9304, 0.891, 0.0036, 0.0036, 0.0028, 0.0024, 0.0026, 0.0026, 0.0018, 0.0014, 0.0036, 0.0018, 0.0014, 0.0016, 0.005, 0.0054, 0.004, 0.113, 0.7924, 0.8744, 0.9294, 0.8394, 0.4966, 0.058, 0.0066, 0.794, 0.9112, 0.865, 0.7072, 0.0146, 0.0084, 0.0044, 0.0028, 0.0026, 0.0026, 0.0024, 0.0026, 0.0024, 0.0026, 0.0026, 0.0028, 0.003, 0.003, 0.0036, 0.0036, 0.0036, 0.004, 0.0058, 0.0094, 0.0114, 0.1722, 0.931, 0.0436, 0.1754, 0.0356, 0.0308, 0.101, 0.08, 0.5034, 0.9478, 0.8838, 0.2576, 0.0568, 0.945, 0.0768, 0.0664, 0.0964, 0.949, 0.915, 0.067, 0.063, 0.0646, 0.0842, 0.3242, 0.247, 0.0952, 0.9274, 0.095, 0.0954, 0.0982, 0.1016, 0.1074, 0.1136, 0.1212, 0.1274, 0.1452, 0.1808, 0.238, 0.3198, 0.4642, 0.6502], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Glyco_transf_41.gap.json b/pfam_gap_rates/Glyco_transf_41.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..5d0b2556fef26e70f2c62c4f975df1d334e0156b
--- /dev/null
+++ b/pfam_gap_rates/Glyco_transf_41.gap.json
@@ -0,0 +1 @@
+{"family": "Glyco_transf_41", "n_seqs": 1589, "length": 462, "gap_rates": [0.5865324103209566, 0.5506607929515418, 0.5468848332284456, 0.5449968533668974, 0.5449968533668974, 0.5449968533668974, 0.5449968533668974, 0.5449968533668974, 0.5449968533668974, 0.5449968533668974, 0.5449968533668974, 0.5456261799874135, 0.5449968533668974, 0.5437382001258654, 0.5437382001258654, 0.5443675267463813, 0.5449968533668974, 0.5431088735053493, 0.5431088735053493, 0.539332913782253, 0.539332913782253, 0.5380742605412209, 0.5374449339207048, 0.5361862806796728, 0.5330396475770925, 0.5330396475770925, 0.5336689741976086, 0.5336689741976086, 0.5317809943360604, 0.5298930144745123, 0.5286343612334802, 0.5286343612334802, 0.527375707992448, 0.527375707992448, 0.527375707992448, 0.5280050346129641, 0.5292636878539962, 0.948395217117684, 0.5324103209565765, 0.5349276274386406, 0.539332913782253, 0.5387035871617369, 0.5380742605412209, 0.5368156073001888, 0.5512901195720579, 0.5443675267463813, 0.5506607929515418, 0.5456261799874135, 0.5368156073001888, 0.5368156073001888, 0.5355569540591567, 0.5374449339207048, 0.5387035871617369, 0.5311516677155443, 0.5248584015103839, 0.5267463813719321, 0.526117054751416, 0.5254877281309, 0.5267463813719321, 0.5317809943360604, 0.5342983008181246, 0.5349276274386406, 0.5449968533668974, 0.5626179987413468, 0.5714285714285714, 0.6003775959723097, 0.605412208936438, 0.6079295154185022, 0.5613593455003146, 0.5235997482693517, 0.5185651353052234, 0.5185651353052234, 0.5147891755821271, 0.512901195720579, 0.512271869100063, 0.5116425424795469, 0.5116425424795469, 0.5116425424795469, 0.5110132158590308, 0.5110132158590308, 0.5116425424795469, 0.512901195720579, 0.512901195720579, 0.513530522341095, 0.512271869100063, 0.512271869100063, 0.514159848961611, 0.512901195720579, 0.512271869100063, 0.512901195720579, 0.514159848961611, 0.513530522341095, 0.512271869100063, 0.512271869100063, 0.5116425424795469, 0.5116425424795469, 0.5116425424795469, 0.5110132158590308, 0.5103838892385147, 0.5091252359974827, 0.5091252359974827, 0.5091252359974827, 0.5091252359974827, 0.5103838892385147, 0.5103838892385147, 0.5110132158590308, 0.5103838892385147, 0.5116425424795469, 0.514159848961611, 0.512901195720579, 0.512271869100063, 0.514159848961611, 0.5355569540591567, 0.5160478288231592, 0.5147891755821271, 0.513530522341095, 0.5154185022026432, 0.5154185022026432, 0.5179358086847073, 0.512901195720579, 0.512271869100063, 0.5116425424795469, 0.5110132158590308, 0.5110132158590308, 0.5110132158590308, 0.512271869100063, 0.513530522341095, 0.5204531151667715, 0.5235997482693517, 0.5242290748898678, 0.5242290748898678, 0.5311516677155443, 0.540591567023285, 0.5538074260541221, 0.5663939584644431, 0.5770925110132159, 0.578980490874764, 0.5808684707363121, 0.5833857772183764, 0.5865324103209566, 0.5934550031466331, 0.5940843297671492, 0.6003775959723097, 0.6073001887979862, 0.6110761485210825, 0.618628067967275, 0.631214600377596, 0.6557583385777218, 0.6683448709880428, 0.7054751415984896, 0.7784770295783512, 0.7910635619886721, 0.7960981749528006, 0.8231592196349906, 0.8351164254247955, 0.8521082441787288, 0.8797986154814349, 0.9024543738200126, 0.908747640025173, 0.9150409062303335, 0.920704845814978, 0.9269981120201385, 0.9288860918816866, 0.9320327249842668, 0.934550031466331, 0.9364380113278792, 0.9364380113278792, 0.9376966645689113, 0.9376966645689113, 0.9383259911894273, 0.9395846444304594, 0.9427312775330396, 0.9427312775330396, 0.947136563876652, 0.9446192573945877, 0.9439899307740718, 0.9439899307740718, 0.9446192573945877, 0.9433606041535557, 0.9433606041535557, 0.9433606041535557, 0.9433606041535557, 0.9433606041535557, 0.9433606041535557, 0.9433606041535557, 0.9433606041535557, 0.9433606041535557, 0.9433606041535557, 0.9433606041535557, 0.9433606041535557, 0.9433606041535557, 0.9446192573945877, 0.9439899307740718, 0.9439899307740718, 0.9439899307740718, 0.9433606041535557, 0.9433606041535557, 0.946507237256136, 0.946507237256136, 0.946507237256136, 0.948395217117684, 0.9477658904971681, 0.9496538703587162, 0.9490245437382001, 0.947136563876652, 0.946507237256136, 0.9458779106356199, 0.9458779106356199, 0.946507237256136, 0.946507237256136, 0.946507237256136, 0.946507237256136, 0.946507237256136, 0.946507237256136, 0.946507237256136, 0.946507237256136, 0.946507237256136, 0.9490245437382001, 0.946507237256136, 0.946507237256136, 0.9446192573945877, 0.9446192573945877, 0.9446192573945877, 0.9446192573945877, 0.9446192573945877, 0.9446192573945877, 0.9446192573945877, 0.9446192573945877, 0.9446192573945877, 0.9446192573945877, 0.9446192573945877, 0.9446192573945877, 0.9446192573945877, 0.9439899307740718, 0.9439899307740718, 0.9439899307740718, 0.9439899307740718, 0.9446192573945877, 0.9446192573945877, 0.9446192573945877, 0.9446192573945877, 0.9439899307740718, 0.9439899307740718, 0.9446192573945877, 0.9446192573945877, 0.9446192573945877, 0.9446192573945877, 0.9452485840151038, 0.9458779106356199, 0.946507237256136, 0.946507237256136, 0.946507237256136, 0.9458779106356199, 0.9433606041535557, 0.9427312775330396, 0.9427312775330396, 0.9414726242920075, 0.9408432976714916, 0.9370673379483953, 0.9320327249842668, 0.9257394587791064, 0.92196349905601, 0.9156702328508496, 0.9049716803020768, 0.8810572687224669, 0.8407803650094399, 0.7577092511013216, 0.7300188797986155, 0.7275015733165513, 0.7256135934550031, 0.7193203272498426, 0.6746381371932033, 0.6425424795468848, 0.6299559471365639, 0.6154814348646948, 0.5896790434235368, 0.5582127123977344, 0.5355569540591567, 0.5235997482693517, 0.5173064820641913, 0.5179358086847073, 0.513530522341095, 0.5097545626179988, 0.5084959093769666, 0.5053492762743864, 0.5028319697923223, 0.5015733165512901, 0.49968533668974197, 0.500314663310258, 0.4984266834487099, 0.4977973568281938, 0.4971680302076778, 0.49590937696664567, 0.4921334172435494, 0.49150409062303335, 0.49150409062303335, 0.49150409062303335, 0.49150409062303335, 0.4908747640025173, 0.4908747640025173, 0.49024543738200127, 0.49024543738200127, 0.4896161107614852, 0.4896161107614852, 0.4896161107614852, 0.4896161107614852, 0.4896161107614852, 0.49024543738200127, 0.4921334172435494, 0.5091252359974827, 0.4977973568281938, 0.500314663310258, 0.49590937696664567, 0.5015733165512901, 0.49653870358716173, 0.4933920704845815, 0.49024543738200127, 0.49276274386406543, 0.49024543738200127, 0.4908747640025173, 0.49024543738200127, 0.4858401510383889, 0.48646947765890497, 0.4858401510383889, 0.48646947765890497, 0.48646947765890497, 0.4858401510383889, 0.48332284455632474, 0.48269351793580867, 0.934550031466331, 0.4839521711768408, 0.4852108244178729, 0.946507237256136, 0.4845814977973568, 0.4883574575204531, 0.4852108244178729, 0.4852108244178729, 0.4852108244178729, 0.4858401510383889, 0.4858401510383889, 0.48646947765890497, 0.48772813089993705, 0.4921334172435494, 0.4921334172435494, 0.4896161107614852, 0.4889867841409692, 0.48709880427942104, 0.48709880427942104, 0.4845814977973568, 0.48332284455632474, 0.4845814977973568, 0.48332284455632474, 0.49150409062303335, 0.4908747640025173, 0.49150409062303335, 0.4801762114537445, 0.47451227186910006, 0.47451227186910006, 0.4751415984896161, 0.47388294524858404, 0.473253618628068, 0.47388294524858404, 0.47451227186910006, 0.4764002517306482, 0.4751415984896161, 0.4776589049716803, 0.4751415984896161, 0.4751415984896161, 0.4751415984896161, 0.47577092511013214, 0.47451227186910006, 0.4726242920075519, 0.4726242920075519, 0.4726242920075519, 0.4719949653870359, 0.4713656387665198, 0.4713656387665198, 0.47073631214600375, 0.4713656387665198, 0.4719949653870359, 0.4713656387665198, 0.4713656387665198, 0.4713656387665198, 0.47010698552548774, 0.47010698552548774, 0.47010698552548774, 0.47073631214600375, 0.47073631214600375, 0.4713656387665198, 0.4719949653870359, 0.4713656387665198, 0.4713656387665198, 0.4719949653870359, 0.4726242920075519, 0.4726242920075519, 0.4719949653870359, 0.4726242920075519, 0.4726242920075519, 0.47451227186910006, 0.47451227186910006, 0.4751415984896161, 0.47577092511013214, 0.4764002517306482, 0.4764002517306482, 0.4764002517306482, 0.4770295783511643, 0.4770295783511643, 0.4770295783511643, 0.4770295783511643, 0.4770295783511643, 0.4776589049716803, 0.4776589049716803, 0.4776589049716803, 0.47828823159219636, 0.4789175582127124, 0.4789175582127124, 0.4789175582127124, 0.4789175582127124, 0.47954688483322844, 0.4808055380742605, 0.4814348646947766, 0.48269351793580867, 0.4858401510383889, 0.4858401510383889, 0.48772813089993705, 0.49024543738200127, 0.4946507237256136, 0.49653870358716173, 0.4977973568281938, 0.4971680302076778, 0.49905601006922595, 0.500314663310258, 0.500943989930774, 0.5015733165512901, 0.5028319697923223, 0.5066079295154186, 0.5091252359974827, 0.514159848961611, 0.526117054751416, 0.540591567023285, 0.5387035871617369, 0.5286343612334802, 0.526117054751416, 0.5248584015103839, 0.5248584015103839, 0.5248584015103839, 0.5267463813719321, 0.5280050346129641, 0.5286343612334802, 0.5305223410950283, 0.5317809943360604, 0.5317809943360604, 0.5336689741976086, 0.5374449339207048, 0.5412208936438011, 0.5481434864694776, 0.5632473253618628, 0.5707992448080553, 0.5833857772183764, 0.6010069225928257, 0.6286972938955318, 0.6916299559471366], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Glyco_transf_7N.gap.json b/pfam_gap_rates/Glyco_transf_7N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..60ecdbfe0508a1c4009b1f221e872ad32ffa62f5
--- /dev/null
+++ b/pfam_gap_rates/Glyco_transf_7N.gap.json
@@ -0,0 +1 @@
+{"family": "Glyco_transf_7N", "n_seqs": 538, "length": 136, "gap_rates": [0.6728624535315985, 0.6672862453531598, 0.6672862453531598, 0.6635687732342007, 0.6486988847583643, 0.6412639405204461, 0.637546468401487, 0.620817843866171, 0.6096654275092936, 0.5929368029739777, 0.5910780669144982, 0.587360594795539, 0.5799256505576208, 0.570631970260223, 0.5687732342007435, 0.5985130111524164, 0.5836431226765799, 0.550185873605948, 0.6282527881040892, 0.516728624535316, 0.5092936802973977, 0.5, 0.4888475836431227, 0.48698884758364314, 0.4795539033457249, 0.4721189591078067, 0.46654275092936803, 0.4591078066914498, 0.8847583643122676, 0.4312267657992565, 0.4163568773234201, 0.39776951672862454, 0.38661710037174724, 0.3828996282527881, 0.42379182156133827, 0.34572490706319703, 0.34014869888475835, 0.3141263940520446, 0.3066914498141264, 0.2955390334572491, 0.28810408921933084, 0.2788104089219331, 0.275092936802974, 0.25650557620817843, 0.23048327137546468, 0.20631970260223048, 0.16171003717472118, 0.13940520446096655, 0.12825278810408922, 0.1171003717472119, 0.1171003717472119, 0.11524163568773234, 0.11524163568773234, 0.11524163568773234, 0.10966542750929369, 0.10966542750929369, 0.10966542750929369, 0.10966542750929369, 0.10966542750929369, 0.10966542750929369, 0.10966542750929369, 0.10966542750929369, 0.10780669144981413, 0.10780669144981413, 0.10780669144981413, 0.10408921933085502, 0.10223048327137546, 0.10223048327137546, 0.10223048327137546, 0.09293680297397769, 0.09107806691449814, 0.08921933085501858, 0.08550185873605948, 0.08364312267657993, 0.08736059479553904, 0.0762081784386617, 0.07434944237918216, 0.0724907063197026, 0.0724907063197026, 0.07063197026022305, 0.07063197026022305, 0.06133828996282528, 0.05762081784386617, 0.05762081784386617, 0.05390334572490706, 0.055762081784386616, 0.05204460966542751, 0.046468401486988845, 0.040892193308550186, 0.03903345724907063, 0.055762081784386616, 0.055762081784386616, 0.055762081784386616, 0.05390334572490706, 0.05390334572490706, 0.055762081784386616, 0.05390334572490706, 0.05204460966542751, 0.05204460966542751, 0.04275092936802974, 0.040892193308550186, 0.040892193308550186, 0.040892193308550186, 0.040892193308550186, 0.040892193308550186, 0.040892193308550186, 0.05018587360594796, 0.05390334572490706, 0.05018587360594796, 0.9219330855018587, 0.06691449814126393, 0.06133828996282528, 0.2211895910780669, 0.06319702602230483, 0.09479553903345725, 0.09479553903345725, 0.05204460966542751, 0.05018587360594796, 0.04460966542750929, 0.04460966542750929, 0.04460966542750929, 0.05018587360594796, 0.05018587360594796, 0.05018587360594796, 0.05018587360594796, 0.05018587360594796, 0.05204460966542751, 0.06133828996282528, 0.0687732342007435, 0.07992565055762081, 0.09293680297397769, 0.09293680297397769, 0.09851301115241635, 0.17472118959107807, 0.27695167286245354, 0.5353159851301115], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Glyco_transf_8.gap.json b/pfam_gap_rates/Glyco_transf_8.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..7d68a7fe83091fbdd17c450b0d8def3ee040a06c
--- /dev/null
+++ b/pfam_gap_rates/Glyco_transf_8.gap.json
@@ -0,0 +1 @@
+{"family": "Glyco_transf_8", "n_seqs": 2639, "length": 359, "gap_rates": [0.7328533535430087, 0.5119363395225465, 0.4577491474043198, 0.3952254641909814, 0.3823417961348996, 0.36377415687760517, 0.3489958317544524, 0.3353543008715423, 0.317165593027662, 0.28533535430087154, 0.8552482000757863, 0.8552482000757863, 0.8556271314892004, 0.8620689655172413, 0.8669950738916257, 0.8669950738916257, 0.8669950738916257, 0.8669950738916257, 0.8673740053050398, 0.867752936718454, 0.8681318681318682, 0.8681318681318682, 0.8681318681318682, 0.8681318681318682, 0.8723001136794241, 0.9488442591890868, 0.8692686623721106, 0.8681318681318682, 0.8681318681318682, 0.8681318681318682, 0.8681318681318682, 0.867752936718454, 0.8673740053050398, 0.8669950738916257, 0.8669950738916257, 0.8669950738916257, 0.8632057597574839, 0.8597953770367563, 0.8552482000757863, 0.8552482000757863, 0.8548692686623721, 0.27586206896551724, 0.2607048124289504, 0.2451686244789693, 0.22963243652898827, 0.22584312239484652, 0.21978021978021978, 0.21447517999242138, 0.20992800303145132, 0.2084122773777946, 0.20765441455096628, 0.20689655172413793, 0.20689655172413793, 0.2057597574838954, 0.2057597574838954, 0.2057597574838954, 0.20538082607048125, 0.3982569154982948, 0.682834406972338, 0.8143236074270557, 0.8230390299355816, 0.830238726790451, 0.834785903751421, 0.8363016294050777, 0.8385752178855627, 0.8400909435392194, 0.8400909435392194, 0.8404698749526336, 0.8400909435392194, 0.8400909435392194, 0.8385752178855627, 0.8385752178855627, 0.8359226979916635, 0.8313755210306935, 0.8245547555892383, 0.8177339901477833, 0.8105342932929139, 0.7101174687381584, 0.6339522546419099, 0.27396741189844637, 0.211443728685108, 0.2087912087912088, 0.2084122773777946, 0.20538082607048125, 0.20613868889730957, 0.47366426676771506, 0.2182644941265631, 0.20424403183023873, 0.1993179234558545, 0.1962864721485411, 0.19363395225464192, 0.1921182266009852, 0.1909814323607427, 0.1898446381205002, 0.1909814323607427, 0.19363395225464192, 0.1921182266009852, 0.19173929518757105, 0.1883289124668435, 0.1883289124668435, 0.1856763925729443, 0.18529746115953014, 0.18529746115953014, 0.18491852974611594, 0.18794998105342933, 0.18340280409245927, 0.2046229632436529, 0.19666540356195528, 0.19969685486926866, 0.32701780977643047, 0.25161045850701025, 0.235695339143615, 0.21674876847290642, 0.2072754831375521, 0.211443728685108, 0.24365289882531263, 0.25009473285335354, 0.3209549071618037, 0.32967032967032966, 0.4304660856384994, 0.4941265630920803, 0.5619552860932171, 0.6218264494126563, 0.7900719969685487, 0.8078817733990148, 0.82379689276241, 0.8794998105342933, 0.8969306555513452, 0.9211822660098522, 0.8897309586964759, 0.8427434634331186, 0.8139446760136415, 0.797271693823418, 0.7817355058734369, 0.6816976127320955, 0.6006062902614627, 0.4346343311860553, 0.35126942023493746, 0.28268283440697234, 0.2220538082607048, 0.15687760515346721, 0.13527851458885942, 0.1314892004547177, 0.12428950359984843, 0.1205001894657067, 0.11557408109132247, 0.11026904130352407, 0.11443728685107996, 0.10610079575596817, 0.08791208791208792, 0.08866995073891626, 0.08525956801818871, 0.08109132247063282, 0.07427055702917772, 0.07389162561576355, 0.070481242895036, 0.07086017430845017, 0.06782872300113679, 0.0651762031072376, 0.3815839333080712, 0.7283061765820387, 0.08184918529746116, 0.051155740810913224, 0.04812428950359985, 0.045471769609700646, 0.04433497536945813, 0.04357711254262978, 0.042061386888973096, 0.042061386888973096, 0.04016672982190224, 0.04016672982190224, 0.04016672982190224, 0.04054566123531641, 0.04016672982190224, 0.04054566123531641, 0.042440318302387266, 0.041682455475558926, 0.04092459264873058, 0.042061386888973096, 0.042440318302387266, 0.04357711254262978, 0.04395604395604396, 0.04433497536945813, 0.04812428950359985, 0.051155740810913224, 0.07578628268283441, 0.09435392194012884, 0.11671087533156499, 0.11936339522546419, 0.8200075786282682, 0.3035240621447518, 0.2978400909435392, 0.24365289882531263, 0.20083364910951118, 0.20386510041682457, 0.2057597574838954, 0.20803334596438045, 0.2125805229253505, 0.21106479727169383, 0.5316407730200834, 0.5627131489200454, 0.6976127320954907, 0.7915877226222053, 0.8112921561197424, 0.8529746115953013, 0.8620689655172413, 0.9173929518757105, 0.9416445623342176, 0.9484653277756726, 0.9499810534293293, 0.9461917392951875, 0.9219401288366805, 0.8692686623721106, 0.8601743084501705, 0.8514588859416445, 0.8067449791587723, 0.7832512315270936, 0.5888594164456233, 0.5395983327017809, 0.5233042819249716, 0.45471769609700646, 0.43577112542629787, 0.38385752178855626, 0.3440697233800682, 0.3266388783630163, 0.31754452444107617, 0.30390299355816597, 0.2917771883289125, 0.28760894278135657, 0.27586206896551724, 0.2660098522167488, 0.24971580143993938, 0.21978021978021978, 0.20538082607048125, 0.20348616900341038, 0.17582417582417584, 0.1731716559302766, 0.16748768472906403, 0.1993179234558545, 0.1330049261083744, 0.11330049261083744, 0.10647972716938234, 0.10269041303524062, 0.10306934444865479, 0.10306934444865479, 0.10269041303524062, 0.1042061386888973, 0.10306934444865479, 0.10458507010231148, 0.10382720727548314, 0.1042061386888973, 0.10458507010231148, 0.10647972716938234, 0.10723758999621069, 0.10723758999621069, 0.11595301250473665, 0.12769988632057597, 0.13224706328154603, 0.1424782114437287, 0.13830996589617278, 0.12959454338764684, 0.12353164077302008, 0.11974232663887836, 0.1220159151193634, 0.12580522925350512, 0.12504736642667677, 0.1246684350132626, 0.12239484653277757, 0.12239484653277757, 0.9461917392951875, 0.9276241000378932, 0.22925350511557407, 0.22129594543387646, 0.23076923076923078, 0.22432739674118984, 0.22129594543387646, 0.21712769988632058, 0.5922697991663509, 0.9090564607805988, 0.8616900341038272, 0.5479348237968927, 0.2887457370215991, 0.2315270935960591, 0.20689655172413793, 0.19287608942781356, 0.17582417582417584, 0.11671087533156499, 0.11671087533156499, 0.1178476695718075, 0.12694202349374764, 0.12087912087912088, 0.12125805229253506, 0.12391057218643425, 0.12580522925350512, 0.13111026904130352, 0.1367942402425161, 0.8635846911708981, 0.9170140204622963, 0.9238347859037515, 0.8662372110647972, 0.8552482000757863, 0.16710875331564987, 0.13603637741568775, 0.13868889730958697, 0.13755210306934446, 0.13793103448275862, 0.13793103448275862, 0.13603637741568775, 0.1367942402425161, 0.13755210306934446, 0.13868889730958697, 0.13868889730958697, 0.14134141720348617, 0.14399393709738537, 0.15233042819249715, 0.1599090564607806, 0.16597195907540735, 0.1735505873436908, 0.830238726790451, 0.8491852974611596, 0.8688897309586965, 0.9109511178476696, 0.9416445623342176, 0.9480863963622584, 0.931792345585449, 0.8901098901098901, 0.8582796513830997, 0.837059492231906, 0.7256536566881394, 0.550587343690792, 0.35695339143615007, 0.26487305797650623, 0.2572944297082228, 0.24441076165214096, 0.2425161045850701, 0.2345585449033725, 0.23114816218264495, 0.23114816218264495, 0.23266388783630162, 0.5039787798408488, 0.23493747631678666, 0.22735884804850323, 0.22660098522167488, 0.22660098522167488, 0.22660098522167488, 0.22697991663508904, 0.22660098522167488, 0.24024251610458508, 0.24175824175824176, 0.24706328154604015, 0.9359605911330049, 0.3361121636983706, 0.2557787040545661, 0.2572944297082228, 0.28760894278135657, 0.31072375899962107, 0.3319439181508147, 0.4577491474043198, 0.753315649867374], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Glycos_transf_1.gap.json b/pfam_gap_rates/Glycos_transf_1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..081065e691318e8019f3b49a6935b8e8fbd47e2b
--- /dev/null
+++ b/pfam_gap_rates/Glycos_transf_1.gap.json
@@ -0,0 +1 @@
+{"family": "Glycos_transf_1", "n_seqs": 5000, "length": 199, "gap_rates": [0.9026, 0.8566, 0.805, 0.7476, 0.7006, 0.6628, 0.6188, 0.565, 0.4974, 0.4766, 0.328, 0.2478, 0.1912, 0.144, 0.1136, 0.0914, 0.087, 0.0834, 0.0818, 0.0802, 0.0788, 0.077, 0.0724, 0.0688, 0.0678, 0.064, 0.0628, 0.0622, 0.0618, 0.0608, 0.0592, 0.0592, 0.0572, 0.0572, 0.0574, 0.0564, 0.083, 0.1252, 0.2386, 0.3586, 0.4326, 0.9316, 0.9486, 0.898, 0.7028, 0.1416, 0.0818, 0.0568, 0.0542, 0.0506, 0.0486, 0.0486, 0.0484, 0.0494, 0.0478, 0.6758, 0.8042, 0.8686, 0.9138, 0.946, 0.938, 0.9004, 0.8364, 0.7624, 0.617, 0.1178, 0.101, 0.0738, 0.0706, 0.0854, 0.0752, 0.0706, 0.0636, 0.0598, 0.0582, 0.0556, 0.1154, 0.1034, 0.0974, 0.095, 0.0958, 0.0766, 0.1686, 0.1026, 0.061, 0.0458, 0.0344, 0.0298, 0.0278, 0.0272, 0.0238, 0.0212, 0.028, 0.9046, 0.2566, 0.2292, 0.031, 0.0152, 0.0138, 0.0128, 0.0128, 0.0122, 0.0122, 0.0112, 0.9324, 0.0122, 0.01, 0.0098, 0.0094, 0.0088, 0.0088, 0.009, 0.038, 0.0146, 0.0134, 0.8796, 0.9204, 0.9298, 0.9098, 0.7796, 0.0108, 0.0092, 0.0092, 0.0082, 0.0086, 0.0074, 0.0078, 0.0066, 0.0092, 0.0076, 0.0068, 0.007, 0.0068, 0.0076, 0.0076, 0.0076, 0.0078, 0.008, 0.0082, 0.0092, 0.011, 0.9028, 0.0142, 0.0164, 0.0186, 0.0208, 0.0244, 0.025, 0.0288, 0.0326, 0.041, 0.0448, 0.0538, 0.063, 0.8948, 0.915, 0.9278, 0.923, 0.9046, 0.8774, 0.2574, 0.2, 0.0792, 0.0702, 0.0674, 0.07, 0.0724, 0.1082, 0.933, 0.2074, 0.1482, 0.0908, 0.0926, 0.0936, 0.097, 0.0998, 0.1038, 0.107, 0.1164, 0.124, 0.133, 0.1526, 0.1712, 0.195, 0.213, 0.9108, 0.2876, 0.3004, 0.3074, 0.3274, 0.3452, 0.3646, 0.3882, 0.415, 0.446, 0.4812, 0.5878, 0.7274, 0.9266], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Glyoxalase_4.gap.json b/pfam_gap_rates/Glyoxalase_4.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..49ba4cf0c4d401faf73bef90c6aa42194e7f6ad0
--- /dev/null
+++ b/pfam_gap_rates/Glyoxalase_4.gap.json
@@ -0,0 +1 @@
+{"family": "Glyoxalase_4", "n_seqs": 1834, "length": 136, "gap_rates": [0.35223555070883317, 0.11613958560523446, 0.03871319520174482, 0.023991275899672846, 0.017993456924754635, 0.012540894220283533, 0.012540894220283533, 0.010905125408942203, 0.010905125408942203, 0.010359869138495093, 0.009814612868047983, 0.009814612868047983, 0.009814612868047983, 0.009814612868047983, 0.009814612868047983, 0.009269356597600873, 0.008724100327153763, 0.008178844056706653, 0.025081788440567066, 0.1553980370774264, 0.010359869138495093, 0.009814612868047983, 0.020719738276990186, 0.031079607415485277, 0.024536532170119956, 0.012540894220283533, 0.9432933478735005, 0.9122137404580153, 0.009814612868047983, 0.008178844056706653, 0.013631406761177753, 0.014721919302071973, 0.019083969465648856, 0.024536532170119956, 0.025627044711014176, 0.018538713195201745, 0.9100327153762269, 0.9225736095965104, 0.9236641221374046, 0.9269356597600873, 0.9329334787350054, 0.9362050163576882, 0.9269356597600873, 0.9252998909487459, 0.9236641221374046, 0.9187568157033806, 0.9073064340239912, 0.013086150490730643, 0.019629225736095966, 0.03653217011995638, 0.026717557251908396, 0.026172300981461286, 0.010905125408942203, 0.009814612868047983, 0.0054525627044711015, 0.003271537622682661, 0.007088331515812432, 0.009269356597600873, 0.2159214830970556, 0.5801526717557252, 0.8969465648854962, 0.9460196292257361, 0.8620501635768811, 0.33751363140676116, 0.009814612868047983, 0.006543075245365322, 0.008178844056706653, 0.0321701199563795, 0.010359869138495093, 0.008178844056706653, 0.0054525627044711015, 0.0054525627044711015, 0.0059978189749182115, 0.006543075245365322, 0.025081788440567066, 0.45965103598691387, 0.539258451472192, 0.9263904034896401, 0.5114503816793893, 0.42202835332606325, 0.019629225736095966, 0.021264994547437296, 0.031079607415485277, 0.025627044711014176, 0.010905125408942203, 0.7213740458015268, 0.7868047982551799, 0.8691384950926936, 0.7579062159214831, 0.6472191930207197, 0.006543075245365322, 0.003271537622682661, 0.004362050163576881, 0.003271537622682661, 0.003816793893129771, 0.004907306434023991, 0.004362050163576881, 0.004362050163576881, 0.004907306434023991, 0.004907306434023991, 0.004907306434023991, 0.0059978189749182115, 0.0059978189749182115, 0.007633587786259542, 0.009269356597600873, 0.009814612868047983, 0.010359869138495093, 0.010905125408942203, 0.010905125408942203, 0.012540894220283533, 0.013086150490730643, 0.016902944383860415, 0.019083969465648856, 0.021264994547437296, 0.026172300981461286, 0.03326063249727372, 0.03489640130861505, 0.03980370774263904, 0.05288985823336968, 0.06270447110141766, 0.9323882224645583, 0.07251908396946564, 0.13140676117775354, 0.1515812431842966, 0.2366412213740458, 0.1990185387131952, 0.23446019629225737, 0.28735005452562706, 0.31952017448200654, 0.3391494002181025, 0.33751363140676116, 0.3511450381679389, 0.3511450381679389, 0.36368593238822244, 0.3914940021810251, 0.42311886586695746], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/GrpB.gap.json b/pfam_gap_rates/GrpB.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..cc56b3ec8248f8b5072b84398e69f5e42d64b3d9
--- /dev/null
+++ b/pfam_gap_rates/GrpB.gap.json
@@ -0,0 +1 @@
+{"family": "GrpB", "n_seqs": 642, "length": 190, "gap_rates": [0.7975077881619937, 0.2538940809968847, 0.16199376947040497, 0.13551401869158877, 0.11682242990654206, 0.09813084112149532, 0.09501557632398754, 0.09345794392523364, 0.08566978193146417, 0.08099688473520249, 0.0763239875389408, 0.07009345794392523, 0.06386292834890965, 0.06074766355140187, 0.0529595015576324, 0.0514018691588785, 0.0514018691588785, 0.048286604361370715, 0.04672897196261682, 0.04672897196261682, 0.045171339563862926, 0.04672897196261682, 0.04672897196261682, 0.045171339563862926, 0.045171339563862926, 0.04361370716510903, 0.06853582554517133, 0.42990654205607476, 0.9314641744548287, 0.11838006230529595, 0.0514018691588785, 0.04672897196261682, 0.5482866043613707, 0.04361370716510903, 0.03894080996884735, 0.037383177570093455, 0.037383177570093455, 0.037383177570093455, 0.037383177570093455, 0.037383177570093455, 0.037383177570093455, 0.03894080996884735, 0.03582554517133956, 0.048286604361370715, 0.03582554517133956, 0.029595015576323987, 0.029595015576323987, 0.028037383177570093, 0.028037383177570093, 0.029595015576323987, 0.029595015576323987, 0.03115264797507788, 0.03115264797507788, 0.029595015576323987, 0.028037383177570093, 0.029595015576323987, 0.029595015576323987, 0.029595015576323987, 0.03115264797507788, 0.059190031152647975, 0.09657320872274143, 0.04672897196261682, 0.03894080996884735, 0.037383177570093455, 0.06542056074766354, 0.05763239875389408, 0.045171339563862926, 0.03894080996884735, 0.03426791277258567, 0.037383177570093455, 0.03582554517133956, 0.03894080996884735, 0.03582554517133956, 0.03582554517133956, 0.03894080996884735, 0.03582554517133956, 0.045171339563862926, 0.05451713395638629, 0.9127725856697819, 0.6074766355140186, 0.1853582554517134, 0.11370716510903427, 0.8956386292834891, 0.8956386292834891, 0.9003115264797508, 0.9034267912772586, 0.9143302180685359, 0.9376947040498442, 0.9485981308411215, 0.9221183800623053, 0.9065420560747663, 0.9018691588785047, 0.8987538940809969, 0.8956386292834891, 0.8925233644859814, 0.12305295950155763, 0.11214953271028037, 0.08411214953271028, 0.07320872274143302, 0.037383177570093455, 0.03582554517133956, 0.03582554517133956, 0.03582554517133956, 0.03582554517133956, 0.037383177570093455, 0.03894080996884735, 0.040498442367601244, 0.04361370716510903, 0.2071651090342679, 0.07476635514018691, 0.11993769470404984, 0.6464174454828661, 0.8956386292834891, 0.3862928348909657, 0.8146417445482866, 0.838006230529595, 0.7881619937694704, 0.14641744548286603, 0.09657320872274143, 0.03582554517133956, 0.037383177570093455, 0.03582554517133956, 0.03582554517133956, 0.03582554517133956, 0.03426791277258567, 0.03271028037383177, 0.03426791277258567, 0.03271028037383177, 0.03582554517133956, 0.03426791277258567, 0.9485981308411215, 0.17445482866043613, 0.14174454828660435, 0.13707165109034267, 0.03582554517133956, 0.03582554517133956, 0.03582554517133956, 0.037383177570093455, 0.03582554517133956, 0.03582554517133956, 0.03582554517133956, 0.037383177570093455, 0.03426791277258567, 0.03426791277258567, 0.03271028037383177, 0.03426791277258567, 0.03582554517133956, 0.03582554517133956, 0.03894080996884735, 0.037383177570093455, 0.03894080996884735, 0.03894080996884735, 0.03894080996884735, 0.03894080996884735, 0.03894080996884735, 0.03894080996884735, 0.040498442367601244, 0.040498442367601244, 0.040498442367601244, 0.040498442367601244, 0.040498442367601244, 0.040498442367601244, 0.040498442367601244, 0.08099688473520249, 0.9314641744548287, 0.9392523364485982, 0.926791277258567, 0.1588785046728972, 0.11370716510903427, 0.09034267912772585, 0.9454828660436138, 0.9439252336448598, 0.0514018691588785, 0.048286604361370715, 0.048286604361370715, 0.048286604361370715, 0.048286604361370715, 0.04984423676012461, 0.04984423676012461, 0.04984423676012461, 0.0514018691588785, 0.0529595015576324, 0.0529595015576324, 0.056074766355140186, 0.05763239875389408, 0.06542056074766354, 0.08566978193146417, 0.16199376947040497, 0.3707165109034268, 0.8208722741433022], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/HAT_KAT11.gap.json b/pfam_gap_rates/HAT_KAT11.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..83b71570bfa347ca47e7c6e42f48a1aaf91b7c60
--- /dev/null
+++ b/pfam_gap_rates/HAT_KAT11.gap.json
@@ -0,0 +1 @@
+{"family": "HAT_KAT11", "n_seqs": 427, "length": 491, "gap_rates": [0.65807962529274, 0.6135831381733021, 0.5690866510538641, 0.5597189695550351, 0.5526932084309133, 0.5456674473067916, 0.522248243559719, 0.4098360655737705, 0.8875878220140515, 0.30679156908665106, 0.2716627634660422, 0.25526932084309134, 0.234192037470726, 0.20608899297423888, 0.18969555035128804, 0.18266978922716628, 0.17096018735362997, 0.1686182669789227, 0.16627634660421545, 0.16393442622950818, 0.16393442622950818, 0.16393442622950818, 0.16393442622950818, 0.16393442622950818, 0.16393442622950818, 0.16159250585480095, 0.1592505854800937, 0.18969555035128804, 0.17096018735362997, 0.1592505854800937, 0.15456674473067916, 0.15456674473067916, 0.1522248243559719, 0.1522248243559719, 0.1592505854800937, 0.1873536299765808, 0.1756440281030445, 0.19437939110070257, 0.40749414519906324, 0.3981264637002342, 0.3793911007025761, 0.4426229508196721, 0.7049180327868853, 0.41920374707259955, 0.13817330210772832, 0.11943793911007025, 0.1288056206088993, 0.10070257611241218, 0.09836065573770492, 0.10070257611241218, 0.0936768149882904, 0.1053864168618267, 0.09601873536299765, 0.0936768149882904, 0.09133489461358314, 0.09133489461358314, 0.09133489461358314, 0.08899297423887588, 0.08899297423887588, 0.08430913348946135, 0.08196721311475409, 0.07962529274004684, 0.14285714285714285, 0.7939110070257611, 0.8454332552693209, 0.8665105386416861, 0.8805620608899297, 0.9110070257611241, 0.9180327868852459, 0.936768149882904, 0.9484777517564403, 0.9437939110070258, 0.9297423887587822, 0.9156908665105387, 0.9016393442622951, 0.8688524590163934, 0.8571428571428571, 0.8032786885245902, 0.7798594847775175, 0.1358313817330211, 0.12646370023419204, 0.07259953161592506, 0.07259953161592506, 0.0702576112412178, 0.0702576112412178, 0.0702576112412178, 0.06088992974238876, 0.06088992974238876, 0.0585480093676815, 0.0585480093676815, 0.053864168618266976, 0.053864168618266976, 0.053864168618266976, 0.05152224824355972, 0.29508196721311475, 0.28805620608899296, 0.20608899297423888, 0.20140515222482436, 0.9461358313817331, 0.04918032786885246, 0.04918032786885246, 0.05152224824355972, 0.04918032786885246, 0.04918032786885246, 0.05152224824355972, 0.05152224824355972, 0.04918032786885246, 0.04918032786885246, 0.04918032786885246, 0.04918032786885246, 0.04918032786885246, 0.04918032786885246, 0.04918032786885246, 0.04918032786885246, 0.04918032786885246, 0.04918032786885246, 0.04918032786885246, 0.04918032786885246, 0.16159250585480095, 0.5690866510538641, 0.594847775175644, 0.6159250585480094, 0.7049180327868853, 0.5971896955503513, 0.5878220140515222, 0.5526932084309133, 0.0585480093676815, 0.06323185011709602, 0.0585480093676815, 0.053864168618266976, 0.0468384074941452, 0.0468384074941452, 0.0468384074941452, 0.04449648711943794, 0.04215456674473068, 0.04215456674473068, 0.04215456674473068, 0.04215456674473068, 0.04449648711943794, 0.04215456674473068, 0.04215456674473068, 0.03981264637002342, 0.03981264637002342, 0.0468384074941452, 0.04918032786885246, 0.053864168618266976, 0.05152224824355972, 0.0468384074941452, 0.05152224824355972, 0.053864168618266976, 0.04215456674473068, 0.04449648711943794, 0.04215456674473068, 0.9461358313817331, 0.9461358313817331, 0.9461358313817331, 0.9461358313817331, 0.9484777517564403, 0.9484777517564403, 0.9484777517564403, 0.9461358313817331, 0.9461358313817331, 0.9461358313817331, 0.9461358313817331, 0.9180327868852459, 0.1873536299765808, 0.0468384074941452, 0.04449648711943794, 0.04215456674473068, 0.04215456674473068, 0.04215456674473068, 0.04215456674473068, 0.04215456674473068, 0.04449648711943794, 0.04215456674473068, 0.04215456674473068, 0.04449648711943794, 0.04449648711943794, 0.04449648711943794, 0.35362997658079626, 0.3583138173302108, 0.35362997658079626, 0.04449648711943794, 0.04449648711943794, 0.04449648711943794, 0.04449648711943794, 0.0468384074941452, 0.0468384074941452, 0.0468384074941452, 0.04449648711943794, 0.6955503512880562, 0.702576112412178, 0.6885245901639344, 0.6814988290398126, 0.6768149882903981, 0.0468384074941452, 0.0468384074941452, 0.0468384074941452, 0.0468384074941452, 0.0468384074941452, 0.0468384074941452, 0.0468384074941452, 0.0468384074941452, 0.0468384074941452, 0.0468384074941452, 0.04918032786885246, 0.053864168618266976, 0.05620608899297424, 0.05620608899297424, 0.06088992974238876, 0.07962529274004684, 0.6744730679156908, 0.7892271662763466, 0.8290398126463701, 0.882903981264637, 0.9063231850117096, 0.9227166276346604, 0.9297423887587822, 0.9391100702576113, 0.9461358313817331, 0.9414519906323185, 0.9320843091334895, 0.9227166276346604, 0.9180327868852459, 0.8946135831381733, 0.8524590163934426, 0.8126463700234192, 0.7868852459016393, 0.7166276346604216, 0.7517564402810304, 0.7400468384074942, 0.7283372365339579, 0.7377049180327869, 0.702576112412178, 0.702576112412178, 0.7400468384074942, 0.1686182669789227, 0.15690866510538642, 0.15690866510538642, 0.15690866510538642, 0.15690866510538642, 0.15456674473067916, 0.1592505854800937, 0.15456674473067916, 0.15456674473067916, 0.15456674473067916, 0.17096018735362997, 0.16393442622950818, 0.16393442622950818, 0.16159250585480095, 0.7049180327868853, 0.6135831381733021, 0.4496487119437939, 0.43559718969555034, 0.43559718969555034, 0.1592505854800937, 0.16627634660421545, 0.17096018735362997, 0.18969555035128804, 0.34894613583138173, 0.4215456674473068, 0.4566744730679157, 0.8571428571428571, 0.8969555035128806, 0.9086651053864169, 0.8758782201405152, 0.7985948477751756, 0.6932084309133489, 0.6861826697892272, 0.6885245901639344, 0.6885245901639344, 0.6885245901639344, 0.6885245901639344, 0.6885245901639344, 0.6885245901639344, 0.6885245901639344, 0.65807962529274, 0.5714285714285714, 0.522248243559719, 0.9344262295081968, 0.936768149882904, 0.9391100702576113, 0.9414519906323185, 0.9484777517564403, 0.9461358313817331, 0.9391100702576113, 0.936768149882904, 0.936768149882904, 0.9320843091334895, 0.48243559718969553, 0.4496487119437939, 0.7892271662763466, 0.8618266978922716, 0.8946135831381733, 0.8992974238875878, 0.8852459016393442, 0.8009367681498829, 0.7845433255269321, 0.1756440281030445, 0.1756440281030445, 0.1756440281030445, 0.1756440281030445, 0.17330210772833723, 0.17330210772833723, 0.17330210772833723, 0.17330210772833723, 0.17330210772833723, 0.17330210772833723, 0.17798594847775176, 0.17798594847775176, 0.17798594847775176, 0.17798594847775176, 0.21779859484777517, 0.22716627634660422, 0.22950819672131148, 0.22950819672131148, 0.22950819672131148, 0.234192037470726, 0.234192037470726, 0.2529274004683841, 0.2576112412177986, 0.7259953161592506, 0.7306791569086651, 0.7447306791569087, 0.7611241217798594, 0.8032786885245902, 0.8548009367681498, 0.8665105386416861, 0.8852459016393442, 0.8946135831381733, 0.9063231850117096, 0.9133489461358314, 0.9133489461358314, 0.9156908665105387, 0.9203747072599532, 0.9227166276346604, 0.9344262295081968, 0.9344262295081968, 0.9391100702576113, 0.9437939110070258, 0.9484777517564403, 0.9437939110070258, 0.9414519906323185, 0.9391100702576113, 0.9344262295081968, 0.927400468384075, 0.9203747072599532, 0.9180327868852459, 0.9133489461358314, 0.9133489461358314, 0.9133489461358314, 0.9063231850117096, 0.892271662763466, 0.8805620608899297, 0.8548009367681498, 0.8524590163934426, 0.7915690866510539, 0.7540983606557377, 0.7377049180327869, 0.7259953161592506, 0.7259953161592506, 0.6557377049180327, 0.6744730679156908, 0.6744730679156908, 0.6768149882903981, 0.6651053864168618, 0.6721311475409836, 0.8337236533957846, 0.6697892271662763, 0.3864168618266979, 0.3840749414519906, 0.38173302107728335, 0.38173302107728335, 0.3957845433255269, 0.3981264637002342, 0.41451990632318503, 0.5175644028103045, 0.4426229508196721, 0.43559718969555034, 0.4332552693208431, 0.4379391100702576, 0.4496487119437939, 0.4496487119437939, 0.4566744730679157, 0.4613583138173302, 0.45433255269320844, 0.45433255269320844, 0.45433255269320844, 0.45433255269320844, 0.4566744730679157, 0.45433255269320844, 0.45901639344262296, 0.4637002341920375, 0.45901639344262296, 0.6838407494145199, 0.6814988290398126, 0.6814988290398126, 0.6861826697892272, 0.667447306791569, 0.8266978922716628, 0.8571428571428571, 0.8899297423887588, 0.9203747072599532, 0.9414519906323185, 0.9461358313817331, 0.9437939110070258, 0.9297423887587822, 0.9110070257611241, 0.8735362997658079, 0.8430913348946136, 0.8173302107728337, 0.6557377049180327, 0.6838407494145199, 0.594847775175644, 0.5878220140515222, 0.5995316159250585, 0.6861826697892272, 0.6791569086651054, 0.6908665105386417, 0.667447306791569, 0.9297423887587822, 0.9414519906323185, 0.936768149882904, 0.8805620608899297, 0.7189695550351288, 0.6604215456674473, 0.6018735362997658, 0.6018735362997658, 0.5456674473067916, 0.5386416861826698, 0.5550351288056206, 0.5433255269320844, 0.5386416861826698, 0.531615925058548, 0.5339578454332553, 0.5386416861826698, 0.5433255269320844, 0.5480093676814989, 0.5480093676814989, 0.550351288056206, 0.5807962529274004, 0.5807962529274004, 0.8899297423887588, 0.5644028103044496, 0.5714285714285714, 0.5784543325526932, 0.5737704918032787, 0.5714285714285714, 0.5807962529274004, 0.5878220140515222, 0.594847775175644, 0.5971896955503513, 0.5925058548009368, 0.594847775175644, 0.6042154566744731, 0.6112412177985949, 0.6088992974238876, 0.6135831381733021, 0.6159250585480094, 0.6182669789227166, 0.6252927400468384, 0.6346604215456675, 0.6416861826697893, 0.65807962529274, 0.6744730679156908, 0.6744730679156908, 0.6791569086651054, 0.6838407494145199, 0.6885245901639344, 0.6932084309133489, 0.702576112412178, 0.7283372365339579, 0.765807962529274, 0.7564402810304449, 0.7283372365339579, 0.7213114754098361, 0.7213114754098361, 0.7236533957845434, 0.7259953161592506, 0.7259953161592506, 0.7330210772833724, 0.7400468384074942, 0.7494145199063232, 0.7798594847775175, 0.7845433255269321, 0.7892271662763466, 0.8056206088992974, 0.8313817330210773, 0.8430913348946136, 0.8875878220140515, 0.9297423887587822], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/HD.gap.json b/pfam_gap_rates/HD.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e19195e5b53c347285dd8b22a49ed44d1cfe8358
--- /dev/null
+++ b/pfam_gap_rates/HD.gap.json
@@ -0,0 +1 @@
+{"family": "HD", "n_seqs": 5000, "length": 174, "gap_rates": [0.6194, 0.3312, 0.17, 0.0746, 0.0708, 0.0686, 0.063, 0.0598, 0.0564, 0.0552, 0.0522, 0.0496, 0.0516, 0.0494, 0.0462, 0.0454, 0.045, 0.0456, 0.048, 0.0554, 0.5086, 0.7566, 0.7876, 0.8306, 0.8622, 0.9038, 0.9156, 0.9094, 0.8846, 0.8506, 0.7996, 0.774, 0.5418, 0.4414, 0.1016, 0.0692, 0.0624, 0.057, 0.0532, 0.0048, 0.0054, 0.0018, 0.0012, 0.0008, 0.0008, 0.0004, 0.0004, 0.0004, 0.0004, 0.0006, 0.0008, 0.0012, 0.0014, 0.0342, 0.0304, 0.0824, 0.4038, 0.3812, 0.377, 0.36, 0.364, 0.5914, 0.6508, 0.8768, 0.9232, 0.9424, 0.8984, 0.6922, 0.6192, 0.5546, 0.3616, 0.5848, 0.396, 0.792, 0.8844, 0.9496, 0.9256, 0.845, 0.6992, 0.3592, 0.337, 0.222, 0.2356, 0.1778, 0.1152, 0.0314, 0.0282, 0.0282, 0.0294, 0.0294, 0.0302, 0.045, 0.038, 0.038, 0.039, 0.039, 0.0404, 0.0502, 0.0514, 0.0548, 0.0594, 0.4852, 0.4972, 0.5226, 0.5946, 0.8518, 0.9412, 0.9014, 0.6372, 0.5468, 0.4956, 0.4512, 0.1152, 0.075, 0.0706, 0.0704, 0.0712, 0.0722, 0.0738, 0.074, 0.0762, 0.0802, 0.084, 0.0924, 0.101, 0.1264, 0.5062, 0.5064, 0.558, 0.5582, 0.7936, 0.8128, 0.8542, 0.8738, 0.9052, 0.925, 0.9474, 0.9372, 0.9138, 0.8866, 0.861, 0.8258, 0.801, 0.7886, 0.5758, 0.552, 0.8128, 0.8856, 0.9296, 0.8364, 0.7934, 0.5262, 0.5026, 0.4822, 0.4672, 0.4492, 0.251, 0.2478, 0.243, 0.2432, 0.2448, 0.2474, 0.2482, 0.2498, 0.253, 0.2556, 0.2586, 0.261, 0.2664, 0.3018, 0.3308, 0.3918, 0.5532, 0.9186], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/HEM4.gap.json b/pfam_gap_rates/HEM4.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b2f8260bc50c170591d7e1ccbb957dc51899dd06
--- /dev/null
+++ b/pfam_gap_rates/HEM4.gap.json
@@ -0,0 +1 @@
+{"family": "HEM4", "n_seqs": 2115, "length": 268, "gap_rates": [0.9304964539007092, 0.5399527186761229, 0.35319148936170214, 0.29929078014184396, 0.24964539007092199, 0.225531914893617, 0.2028368794326241, 0.17966903073286053, 0.1702127659574468, 0.15933806146572105, 0.14846335697399526, 0.12860520094562647, 0.11773049645390071, 0.11016548463356975, 0.10401891252955082, 0.09692671394799054, 0.0950354609929078, 0.09267139479905437, 0.09078014184397164, 0.08888888888888889, 0.08794326241134752, 0.08557919621749409, 0.08557919621749409, 0.08557919621749409, 0.915839243498818, 0.3900709219858156, 0.2832151300236407, 0.242080378250591, 0.225531914893617, 0.20094562647754138, 0.18912529550827423, 0.10638297872340426, 0.09598108747044917, 0.08368794326241134, 0.07801418439716312, 0.0789598108747045, 0.10118203309692671, 0.20141843971631207, 0.17825059101654847, 0.1862884160756501, 0.9475177304964539, 0.5886524822695035, 0.5423167848699764, 0.08226950354609928, 0.04539007092198582, 0.037825059101654845, 0.03640661938534279, 0.03451536643026005, 0.03404255319148936, 0.03404255319148936, 0.03451536643026005, 0.03451536643026005, 0.03404255319148936, 0.033569739952718676, 0.033569739952718676, 0.033569739952718676, 0.033569739952718676, 0.033569739952718676, 0.12151300236406619, 0.11678486997635934, 0.12529550827423167, 0.12624113475177304, 0.10732860520094563, 0.13853427895981088, 0.810401891252955, 0.9446808510638298, 0.8274231678486997, 0.7971631205673759, 0.47092198581560285, 0.4236406619385343, 0.25390070921985813, 0.20803782505910165, 0.16973995271867612, 0.10874704491725769, 0.08936170212765958, 0.07186761229314421, 0.06193853427895981, 0.08605200945626477, 0.05673758865248227, 0.04680851063829787, 0.03546099290780142, 0.033569739952718676, 0.03215130023640662, 0.03215130023640662, 0.03215130023640662, 0.03215130023640662, 0.03215130023640662, 0.03215130023640662, 0.03309692671394799, 0.03215130023640662, 0.03309692671394799, 0.031205673758865248, 0.031205673758865248, 0.031205673758865248, 0.031205673758865248, 0.03877068557919622, 0.9404255319148936, 0.061465721040189124, 0.04302600472813239, 0.034988179669030735, 0.03404255319148936, 0.11678486997635934, 0.1536643026004728, 0.9229314420803783, 0.9423167848699764, 0.9375886524822695, 0.909692671394799, 0.050118203309692674, 0.04160756501182033, 0.06477541371158392, 0.5971631205673759, 0.075177304964539, 0.04018912529550828, 0.03215130023640662, 0.037825059101654845, 0.03404255319148936, 0.030260047281323876, 0.030260047281323876, 0.030732860520094562, 0.030732860520094562, 0.07754137115839244, 0.037825059101654845, 0.03593380614657211, 0.18817966903073285, 0.7891252955082743, 0.9347517730496454, 0.8557919621749409, 0.6444444444444445, 0.04964539007092199, 0.06524822695035461, 0.07328605200945626, 0.07139479905437353, 0.6104018912529551, 0.06997635933806147, 0.037825059101654845, 0.9210401891252955, 0.9418439716312057, 0.9002364066193853, 0.032624113475177303, 0.032624113475177303, 0.03167848699763593, 0.9191489361702128, 0.032624113475177303, 0.03215130023640662, 0.03215130023640662, 0.09219858156028368, 0.05200945626477541, 0.03735224586288416, 0.9475177304964539, 0.03735224586288416, 0.03829787234042553, 0.03877068557919622, 0.037825059101654845, 0.03640661938534279, 0.03877068557919622, 0.03877068557919622, 0.03877068557919622, 0.0789598108747045, 0.061465721040189124, 0.05200945626477541, 0.04680851063829787, 0.04775413711583924, 0.03687943262411347, 0.03309692671394799, 0.031205673758865248, 0.029314420803782507, 0.02884160756501182, 0.028368794326241134, 0.028368794326241134, 0.028368794326241134, 0.028368794326241134, 0.028368794326241134, 0.9470449172576832, 0.8817966903073287, 0.2903073286052009, 0.18770685579196217, 0.17257683215130024, 0.1735224586288416, 0.1508274231678487, 0.9215130023640662, 0.9073286052009456, 0.08983451536643026, 0.07659574468085106, 0.06950354609929078, 0.05200945626477541, 0.051536643026004726, 0.04775413711583924, 0.04302600472813239, 0.0425531914893617, 0.04680851063829787, 0.2127659574468085, 0.1607565011820331, 0.10401891252955082, 0.06808510638297872, 0.04302600472813239, 0.9375886524822695, 0.9456264775413712, 0.9224586288416076, 0.03215130023640662, 0.030260047281323876, 0.030260047281323876, 0.03309692671394799, 0.031205673758865248, 0.030260047281323876, 0.030260047281323876, 0.030260047281323876, 0.030260047281323876, 0.030260047281323876, 0.030260047281323876, 0.030732860520094562, 0.032624113475177303, 0.03309692671394799, 0.03309692671394799, 0.03215130023640662, 0.032624113475177303, 0.03877068557919622, 0.04113475177304964, 0.12340425531914893, 0.26666666666666666, 0.44208037825059104, 0.640661938534279, 0.7711583924349882, 0.8274231678486997, 0.9418439716312057, 0.8624113475177305, 0.7867612293144208, 0.7527186761229314, 0.51725768321513, 0.4151300236406619, 0.07659574468085106, 0.05673758865248227, 0.050591016548463354, 0.04160756501182033, 0.04113475177304964, 0.04160756501182033, 0.04113475177304964, 0.042080378250591015, 0.042080378250591015, 0.0425531914893617, 0.04302600472813239, 0.044444444444444446, 0.04491725768321513, 0.04539007092198582, 0.04539007092198582, 0.046335697399527184, 0.04822695035460993, 0.048699763593380616, 0.07044917257683216, 0.062411347517730496, 0.06619385342789598, 0.07139479905437353, 0.07092198581560284, 0.07234042553191489, 0.075177304964539, 0.2425531914893617, 0.10070921985815603, 0.10685579196217494, 0.11678486997635934, 0.1314420803782506, 0.13711583924349882, 0.141371158392435, 0.14562647754137115, 0.1536643026004728, 0.16264775413711585, 0.17257683215130024, 0.21229314420803783, 0.3087470449172577, 0.8364066193853428], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/HEPN.gap.json b/pfam_gap_rates/HEPN.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..3aec9717dfd16e82df7cfda8fb2def072cc4b5e8
--- /dev/null
+++ b/pfam_gap_rates/HEPN.gap.json
@@ -0,0 +1 @@
+{"family": "HEPN", "n_seqs": 1026, "length": 137, "gap_rates": [0.8206627680311891, 0.4902534113060429, 0.3060428849902534, 0.2290448343079922, 0.18226120857699804, 0.16861598440545808, 0.1530214424951267, 0.14327485380116958, 0.13450292397660818, 0.12573099415204678, 0.12183235867446393, 0.11793372319688109, 0.11306042884990253, 0.11306042884990253, 0.1101364522417154, 0.10623781676413255, 0.10526315789473684, 0.10038986354775828, 0.09551656920077972, 0.09161793372319688, 0.08187134502923976, 0.08187134502923976, 0.9025341130604289, 0.8664717348927875, 0.07407407407407407, 0.07212475633528265, 0.06140350877192982, 0.06140350877192982, 0.056530214424951264, 0.05458089668615984, 0.049707602339181284, 0.04580896686159844, 0.043859649122807015, 0.04191033138401559, 0.03996101364522417, 0.03996101364522417, 0.03508771929824561, 0.0341130604288499, 0.030214424951267055, 0.03313840155945419, 0.03313840155945419, 0.03313840155945419, 0.03216374269005848, 0.0341130604288499, 0.03508771929824561, 0.03508771929824561, 0.0341130604288499, 0.03313840155945419, 0.030214424951267055, 0.03508771929824561, 0.056530214424951264, 0.8762183235867447, 0.11988304093567251, 0.038011695906432746, 0.038011695906432746, 0.03996101364522417, 0.04191033138401559, 0.04093567251461988, 0.042884990253411304, 0.042884990253411304, 0.04580896686159844, 0.04580896686159844, 0.04580896686159844, 0.04678362573099415, 0.7992202729044834, 0.7524366471734892, 0.05165692007797271, 0.05458089668615984, 0.057504873294346975, 0.07115009746588694, 0.08576998050682261, 0.08674463937621832, 0.1881091617933723, 0.40545808966861596, 0.7641325536062378, 0.8118908382066277, 0.8596491228070176, 0.8927875243664717, 0.8820662768031189, 0.8265107212475633, 0.7953216374269005, 0.6871345029239766, 0.1023391812865497, 0.1023391812865497, 0.09746588693957114, 0.09746588693957114, 0.09844054580896686, 0.09649122807017543, 0.09649122807017543, 0.09064327485380116, 0.09551656920077972, 0.08966861598440545, 0.08966861598440545, 0.09064327485380116, 0.09551656920077972, 0.09746588693957114, 0.09941520467836257, 0.10038986354775828, 0.09746588693957114, 0.10038986354775828, 0.09941520467836257, 0.10136452241715399, 0.10623781676413255, 0.10818713450292397, 0.11403508771929824, 0.11988304093567251, 0.12962962962962962, 0.24561403508771928, 0.665692007797271, 0.6978557504873294, 0.8313840155945419, 0.9259259259259259, 0.797270955165692, 0.6851851851851852, 0.6091617933723197, 0.5126705653021443, 0.1608187134502924, 0.14912280701754385, 0.14717348927875243, 0.15204678362573099, 0.15594541910331383, 0.15984405458089668, 0.16861598440545808, 0.17251461988304093, 0.17641325536062377, 0.18128654970760233, 0.19005847953216373, 0.1968810916179337, 0.20565302144249512, 0.20955165692007796, 0.22319688109161792, 0.23684210526315788, 0.27680311890838205, 0.3138401559454191, 0.38693957115009747, 0.5087719298245614, 0.695906432748538], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/HIRAN.gap.json b/pfam_gap_rates/HIRAN.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..29a965a6ee77ee49921113a11c47599628061028
--- /dev/null
+++ b/pfam_gap_rates/HIRAN.gap.json
@@ -0,0 +1 @@
+{"family": "HIRAN", "n_seqs": 575, "length": 149, "gap_rates": [0.6852173913043478, 0.551304347826087, 0.4608695652173913, 0.34782608695652173, 0.2852173913043478, 0.21565217391304348, 0.17739130434782607, 0.1391304347826087, 0.12695652173913044, 0.12, 0.11652173913043479, 0.11652173913043479, 0.391304347826087, 0.41739130434782606, 0.9269565217391305, 0.9391304347826087, 0.9460869565217391, 0.9460869565217391, 0.9460869565217391, 0.9443478260869566, 0.9269565217391305, 0.92, 0.11304347826086956, 0.09913043478260869, 0.7843478260869565, 0.8643478260869565, 0.92, 0.7860869565217391, 0.7669565217391304, 0.4, 0.29043478260869565, 0.08347826086956522, 0.0782608695652174, 0.07478260869565218, 0.07304347826086957, 0.06434782608695652, 0.057391304347826085, 0.05217391304347826, 0.03826086956521739, 0.029565217391304348, 0.02782608695652174, 0.02434782608695652, 0.02608695652173913, 0.02608695652173913, 0.022608695652173914, 0.7182608695652174, 0.7321739130434782, 0.7339130434782609, 0.7339130434782609, 0.7443478260869565, 0.7617391304347826, 0.7965217391304348, 0.8382608695652174, 0.8660869565217392, 0.8852173913043478, 0.8939130434782608, 0.9043478260869565, 0.9217391304347826, 0.9495652173913044, 0.9304347826086956, 0.9078260869565218, 0.9008695652173913, 0.8921739130434783, 0.8817391304347826, 0.8521739130434782, 0.8226086956521739, 0.7669565217391304, 0.7530434782608696, 0.7408695652173913, 0.7339130434782609, 0.7321739130434782, 0.7286956521739131, 0.7130434782608696, 0.020869565217391306, 0.019130434782608695, 0.01565217391304348, 0.01565217391304348, 0.017391304347826087, 0.01565217391304348, 0.01391304347826087, 0.01217391304347826, 0.01217391304347826, 0.010434782608695653, 0.01217391304347826, 0.01391304347826087, 0.09739130434782609, 0.8678260869565217, 0.92, 0.9443478260869566, 0.9339130434782609, 0.8747826086956522, 0.8469565217391304, 0.01217391304347826, 0.04, 0.036521739130434785, 0.01565217391304348, 0.9478260869565217, 0.9426086956521739, 0.01391304347826087, 0.006956521739130435, 0.008695652173913044, 0.008695652173913044, 0.010434782608695653, 0.010434782608695653, 0.01391304347826087, 0.036521739130434785, 0.050434782608695654, 0.05565217391304348, 0.05391304347826087, 0.05565217391304348, 0.06086956521739131, 0.06434782608695652, 0.06608695652173913, 0.06956521739130435, 0.07304347826086957, 0.0817391304347826, 0.08695652173913043, 0.1356521739130435, 0.11652173913043479, 0.13391304347826086, 0.1426086956521739, 0.1443478260869565, 0.1791304347826087, 0.17391304347826086, 0.17739130434782607, 0.18782608695652173, 0.20173913043478262, 0.22260869565217392, 0.23130434782608697, 0.2417391304347826, 0.2591304347826087, 0.6121739130434782, 0.7878260869565218, 0.9130434782608695, 0.9478260869565217, 0.8556521739130435, 0.7147826086956521, 0.3443478260869565, 0.3652173913043478, 0.37565217391304345, 0.38608695652173913, 0.4017391304347826, 0.4156521739130435, 0.42434782608695654, 0.44869565217391305, 0.4973913043478261, 0.5565217391304348, 0.6243478260869565, 0.7165217391304348], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/HIRA_B.gap.json b/pfam_gap_rates/HIRA_B.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..2591d904970f827c37720c0da38b160ab9db2dd9
--- /dev/null
+++ b/pfam_gap_rates/HIRA_B.gap.json
@@ -0,0 +1 @@
+{"family": "HIRA_B", "n_seqs": 179, "length": 23, "gap_rates": [0.2737430167597765, 0.0893854748603352, 0.055865921787709494, 0.0446927374301676, 0.027932960893854747, 0.09497206703910614, 0.0446927374301676, 0.00558659217877095, 0.00558659217877095, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.01675977653631285, 0.01675977653631285, 0.061452513966480445, 0.1452513966480447, 0.2569832402234637, 0.7597765363128491], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/HMG_CoA_synt_C.gap.json b/pfam_gap_rates/HMG_CoA_synt_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d414efbe51743cbf1d7afecf63cb77cd7c217859
--- /dev/null
+++ b/pfam_gap_rates/HMG_CoA_synt_C.gap.json
@@ -0,0 +1 @@
+{"family": "HMG_CoA_synt_C", "n_seqs": 773, "length": 294, "gap_rates": [0.6623544631306598, 0.5601552393272963, 0.5342820181112549, 0.5239327296248383, 0.6209573091849935, 0.5032341526520052, 0.48771021992238034, 0.4579560155239327, 0.4294954721862872, 0.4178525226390686, 0.40103492884864167, 0.38939197930142305, 0.36610608020698576, 0.35963777490297544, 0.35963777490297544, 0.35834411384217335, 0.34411384217335056, 0.34411384217335056, 0.34411384217335056, 0.34411384217335056, 0.34411384217335056, 0.37904269081500647, 0.3855109961190168, 0.38421733505821476, 0.34799482535575677, 0.33635187580853815, 0.3777490297542044, 0.33376455368693403, 0.3298835705045278, 0.33247089262613194, 0.33376455368693403, 0.33376455368693403, 0.33247089262613194, 0.33247089262613194, 0.33376455368693403, 0.33376455368693403, 0.33376455368693403, 0.3350582147477361, 0.3350582147477361, 0.3350582147477361, 0.3350582147477361, 0.33635187580853815, 0.33635187580853815, 0.3389391979301423, 0.33764553686934023, 0.33764553686934023, 0.33635187580853815, 0.3389391979301423, 0.3389391979301423, 0.34023285899094435, 0.34023285899094435, 0.34023285899094435, 0.34152652005174644, 0.38939197930142305, 0.5161707632600259, 0.5226390685640362, 0.5291073738680466, 0.535575679172057, 0.7128072445019404, 0.6804657179818887, 0.815006468305304, 0.8499353169469599, 0.8771021992238034, 0.9042690815006468, 0.9391979301423027, 0.9456662354463131, 0.9197930142302717, 0.888745148771022, 0.8576972833117723, 0.8357050452781372, 0.7632600258732212, 0.6351875808538163, 0.8732212160413971, 0.5058214747736093, 0.4579560155239327, 0.37257438551099614, 0.36222509702457956, 0.35446313065976714, 0.35058214747736094, 0.33764553686934023, 0.33764553686934023, 0.33764553686934023, 0.33635187580853815, 0.33635187580853815, 0.3350582147477361, 0.3350582147477361, 0.3350582147477361, 0.3350582147477361, 0.3350582147477361, 0.3350582147477361, 0.3350582147477361, 0.3350582147477361, 0.3350582147477361, 0.33764553686934023, 0.3389391979301423, 0.34023285899094435, 0.3428201811125485, 0.34411384217335056, 0.36222509702457956, 0.35705045278137126, 0.36869340232858994, 0.3777490297542044, 0.4139715394566624, 0.4398447606727037, 0.44372574385511, 0.4476067270375162, 0.4553686934023286, 0.4579560155239327, 0.4592496765847348, 0.46959896507115134, 0.4721862871927555, 0.48253557567917205, 0.5769728331177232, 0.6248382923673997, 0.536869340232859, 0.5588615782664942, 0.5291073738680466, 0.517464424320828, 0.5161707632600259, 0.5071151358344114, 0.49805950840879687, 0.49547218628719275, 0.49935316946959896, 0.49547218628719275, 0.49547218628719275, 0.5019404915912031, 0.7153945666235446, 0.6765847347994826, 0.6714100905562742, 0.5161707632600259, 0.5161707632600259, 0.5161707632600259, 0.5135834411384217, 0.5058214747736093, 0.5045278137128072, 0.500646830530401, 0.49029754204398446, 0.48124191461837, 0.48382923673997413, 0.48124191461837, 0.47736093143596375, 0.4721862871927555, 0.4670116429495472, 0.46571798188874514, 0.4579560155239327, 0.4333764553686934, 0.4152652005174644, 0.3997412677878396, 0.37645536869340235, 0.34540750323415265, 0.33376455368693403, 0.3130659767141009, 0.3053040103492885, 0.2923673997412678, 0.278137128072445, 0.2677878395860285, 0.24579560155239327, 0.24320827943078913, 0.23415265200517466, 0.2276843467011643, 0.2238033635187581, 0.22121604139715395, 0.2186287192755498, 0.2147477360931436, 0.2147477360931436, 0.2147477360931436, 0.2147477360931436, 0.2147477360931436, 0.2147477360931436, 0.21733505821474774, 0.21733505821474774, 0.21733505821474774, 0.21733505821474774, 0.21733505821474774, 0.2186287192755498, 0.2186287192755498, 0.21733505821474774, 0.21604139715394566, 0.21733505821474774, 0.21733505821474774, 0.21733505821474774, 0.2186287192755498, 0.5420439844760673, 0.36998706338939197, 0.2535575679172057, 0.2315653298835705, 0.2238033635187581, 0.23415265200517466, 0.24838292367399742, 0.24191461836998707, 0.22897800776196636, 0.222509702457956, 0.21992238033635186, 0.21992238033635186, 0.21992238033635186, 0.21992238033635186, 0.2186287192755498, 0.2186287192755498, 0.2186287192755498, 0.2186287192755498, 0.2186287192755498, 0.2186287192755498, 0.2186287192755498, 0.21992238033635186, 0.22121604139715395, 0.222509702457956, 0.222509702457956, 0.222509702457956, 0.222509702457956, 0.222509702457956, 0.2238033635187581, 0.22639068564036222, 0.22639068564036222, 0.22897800776196636, 0.22897800776196636, 0.23285899094437257, 0.23932729624838292, 0.24191461836998707, 0.2445019404915912, 0.7451487710219923, 0.7360931435963778, 0.6946959896507116, 0.6895213454075032, 0.628719275549806, 0.908150064683053, 0.8926261319534282, 0.31565329883570503, 0.3091849935316947, 0.3117723156532988, 0.32470892626131953, 0.3829236739974127, 0.3389391979301423, 0.32341526520051744, 0.2949547218628719, 0.2742561448900388, 0.2716688227684347, 0.2664941785252264, 0.2664941785252264, 0.2664941785252264, 0.2664941785252264, 0.2677878395860285, 0.26390685640362227, 0.2690815006468305, 0.2716688227684347, 0.2729624838292367, 0.2742561448900388, 0.2755498059508409, 0.2794307891332471, 0.2923673997412678, 0.3014230271668823, 0.3298835705045278, 0.34540750323415265, 0.36998706338939197, 0.3958602846054334, 0.4359637774902975, 0.46054333764553684, 0.46054333764553684, 0.4670116429495472, 0.47347994825355755, 0.4799482535575679, 0.47865459249676584, 0.47736093143596375, 0.47736093143596375, 0.4760672703751617, 0.4799482535575679, 0.4851228978007762, 0.4890038809831824, 0.49417852522639066, 0.5084087968952135, 0.5109961190168176, 0.5135834411384217, 0.5122897800776197, 0.5161707632600259, 0.5161707632600259, 0.5097024579560155, 0.5109961190168176, 0.5122897800776197, 0.5148771021992238, 0.5148771021992238, 0.5161707632600259, 0.517464424320828, 0.5161707632600259, 0.517464424320828, 0.5200517464424321, 0.5213454075032341, 0.5252263906856404, 0.5226390685640362, 0.5239327296248383, 0.5278137128072445, 0.5342820181112549, 0.535575679172057, 0.5472186287192755, 0.5912031047865459, 0.7128072445019404], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/HNH.gap.json b/pfam_gap_rates/HNH.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..20eed65a3e7936b4464fcae9b0046a244f8b8daa
--- /dev/null
+++ b/pfam_gap_rates/HNH.gap.json
@@ -0,0 +1 @@
+{"family": "HNH", "n_seqs": 2467, "length": 58, "gap_rates": [0.3036076205918119, 0.30158086745034457, 0.24077827320632347, 0.1722740170247264, 0.16538305634373734, 0.1641670044588569, 0.15605999189298744, 0.22091609241994326, 0.31698419132549654, 0.3036076205918119, 0.31252533441426833, 0.760437778678557, 0.8751520064856101, 0.9096068098905553, 0.8881232265910012, 0.8532630725577625, 0.7061207944872314, 0.2732063234698014, 0.15605999189298744, 0.06566680178354277, 0.011755168220510741, 0.004053506282934738, 0.0024321037697608433, 0.0024321037697608433, 0.002026753141467369, 0.0024321037697608433, 0.002026753141467369, 0.002026753141467369, 0.002026753141467369, 0.05026347790839076, 0.8483988650182408, 0.9428455614106201, 0.7709768950141873, 0.023510336441021483, 0.008917713822456425, 0.004053506282934738, 0.0044588569112282124, 0.0024321037697608433, 0.944466963923794, 0.9055533036076205, 0.0024321037697608433, 0.0044588569112282124, 0.00526955816781516, 0.002837454398054317, 0.0, 0.0012160518848804217, 0.0016214025131738954, 0.008917713822456425, 0.011349817592217268, 0.0356708552898257, 0.059586542359140654, 0.06526145115524928, 0.07985407377381434, 0.10903931901094446, 0.14633157681394407, 0.18970409404134578, 0.3514389947304418, 0.7900283745439806], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/HNH_3.gap.json b/pfam_gap_rates/HNH_3.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..75a3def72f1388785bce0e6f09f42e123932fc7d
--- /dev/null
+++ b/pfam_gap_rates/HNH_3.gap.json
@@ -0,0 +1 @@
+{"family": "HNH_3", "n_seqs": 424, "length": 49, "gap_rates": [0.8136792452830188, 0.4268867924528302, 0.294811320754717, 0.27122641509433965, 0.24056603773584906, 0.20047169811320756, 0.18867924528301888, 0.18867924528301888, 0.18632075471698112, 0.18160377358490565, 0.1650943396226415, 0.1509433962264151, 0.10141509433962265, 0.17688679245283018, 0.8372641509433962, 0.08962264150943396, 0.05660377358490566, 0.910377358490566, 0.10849056603773585, 0.054245283018867926, 0.9268867924528302, 0.0589622641509434, 0.018867924528301886, 0.0047169811320754715, 0.0023584905660377358, 0.0023584905660377358, 0.0023584905660377358, 0.0, 0.0, 0.0, 0.0023584905660377358, 0.0023584905660377358, 0.0023584905660377358, 0.0023584905660377358, 0.0047169811320754715, 0.0047169811320754715, 0.007075471698113208, 0.007075471698113208, 0.01179245283018868, 0.01179245283018868, 0.02122641509433962, 0.09433962264150944, 0.14858490566037735, 0.17688679245283018, 0.21462264150943397, 0.2759433962264151, 0.3278301886792453, 0.49056603773584906, 0.8608490566037735], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/HNH_4.gap.json b/pfam_gap_rates/HNH_4.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..798e08b58ab77a39bc46abe4aa233ff7435346fd
--- /dev/null
+++ b/pfam_gap_rates/HNH_4.gap.json
@@ -0,0 +1 @@
+{"family": "HNH_4", "n_seqs": 382, "length": 64, "gap_rates": [0.33507853403141363, 0.21727748691099477, 0.21727748691099477, 0.21204188481675393, 0.20680628272251309, 0.20157068062827224, 0.19633507853403143, 0.19109947643979058, 0.18324607329842932, 0.17539267015706805, 0.18586387434554974, 0.18848167539267016, 0.20680628272251309, 0.28272251308900526, 0.4790575916230366, 0.856020942408377, 0.4712041884816754, 0.21727748691099477, 0.16753926701570682, 0.11518324607329843, 0.07329842931937172, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.015706806282722512, 0.0, 0.8926701570680629, 0.9057591623036649, 0.918848167539267, 0.9397905759162304, 0.9083769633507853, 0.9057591623036649, 0.8900523560209425, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.002617801047120419, 0.002617801047120419, 0.0, 0.005235602094240838, 0.007853403141361256, 0.007853403141361256, 0.007853403141361256, 0.900523560209424, 0.015706806282722512, 0.020942408376963352, 0.028795811518324606, 0.07853403141361257, 0.17015706806282724, 0.24083769633507854, 0.693717277486911], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/HRDC.gap.json b/pfam_gap_rates/HRDC.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e9d13cb1f3c0a3aac685a858b783506a820e7443
--- /dev/null
+++ b/pfam_gap_rates/HRDC.gap.json
@@ -0,0 +1 @@
+{"family": "HRDC", "n_seqs": 2973, "length": 68, "gap_rates": [0.8456104944500504, 0.45610494450050454, 0.1920618903464514, 0.08409014463504877, 0.057181298351833165, 0.04339051463168517, 0.029263370332996974, 0.026908846283215607, 0.02455432223343424, 0.022199798183652877, 0.021527077026572486, 0.020854355869492094, 0.020181634712411706, 0.01849983181971073, 0.017154389505549948, 0.016818028927009756, 0.017154389505549948, 0.015472586612848975, 0.015136226034308779, 0.018836192398250923, 0.017154389505549948, 0.014799865455768583, 0.01446350487722839, 0.012781701984527414, 0.010763538513286243, 0.008745375042045072, 0.004709048099562731, 0.004372687521022536, 0.004036326942482341, 0.003363605785401951, 0.003363605785401951, 0.003363605785401951, 0.003363605785401951, 0.0030272452068617556, 0.0013454423141607804, 0.0016818028927009755, 0.0020181634712411706, 0.004372687521022536, 0.008072653884964682, 0.009081735620585268, 0.009418096199125462, 0.010763538513286243, 0.011436259670366633, 0.012445341405987218, 0.013790783720148, 0.018163471241170535, 0.020854355869492094, 0.02657248570467541, 0.04339051463168517, 0.07769929364278506, 0.07029936091490077, 0.06323578876555667, 0.06592667339387824, 0.07265388496468214, 0.07702657248570467, 0.08442650521358896, 0.09149007736293306, 0.09552640430541541, 0.1029263370332997, 0.10696266397578204, 0.1096535486041036, 0.11402623612512613, 0.11839892364614867, 0.12478977463841238, 0.13319878910191726, 0.15270770265724856, 0.20114362596703667, 0.3969054826774302], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/HSDR_N.gap.json b/pfam_gap_rates/HSDR_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..78f213e7010c27dff7ca09a14e65a46c2fd0a495
--- /dev/null
+++ b/pfam_gap_rates/HSDR_N.gap.json
@@ -0,0 +1 @@
+{"family": "HSDR_N", "n_seqs": 1552, "length": 263, "gap_rates": [0.9052835051546392, 0.6230670103092784, 0.47487113402061853, 0.3801546391752577, 0.3756443298969072, 0.3788659793814433, 0.35760309278350516, 0.3485824742268041, 0.3389175257731959, 0.6134020618556701, 0.34536082474226804, 0.3279639175257732, 0.32538659793814434, 0.32087628865979384, 0.32216494845360827, 0.32152061855670105, 0.916881443298969, 0.4059278350515464, 0.32989690721649484, 0.32023195876288657, 0.3163659793814433, 0.31507731958762886, 0.31378865979381443, 0.31378865979381443, 0.35244845360824745, 0.4168814432989691, 0.4162371134020619, 0.4413659793814433, 0.49742268041237114, 0.5045103092783505, 0.5109536082474226, 0.5592783505154639, 0.5573453608247423, 0.5682989690721649, 0.645618556701031, 0.6591494845360825, 0.6539948453608248, 0.6378865979381443, 0.9175257731958762, 0.8382731958762887, 0.7158505154639175, 0.4587628865979381, 0.4252577319587629, 0.4117268041237113, 0.39304123711340205, 0.3331185567010309, 0.31056701030927836, 0.29961340206185566, 0.2925257731958763, 0.2854381443298969, 0.28350515463917525, 0.2777061855670103, 0.2847938144329897, 0.2854381443298969, 0.28286082474226804, 0.2822164948453608, 0.28286082474226804, 0.28350515463917525, 0.2867268041237113, 0.29896907216494845, 0.2957474226804124, 0.2815721649484536, 0.30927835051546393, 0.31829896907216493, 0.45038659793814434, 0.509020618556701, 0.592139175257732, 0.8002577319587629, 0.8807989690721649, 0.9130154639175257, 0.9420103092783505, 0.9497422680412371, 0.9329896907216495, 0.8949742268041238, 0.8266752577319587, 0.6146907216494846, 0.5431701030927835, 0.46198453608247425, 0.4368556701030928, 0.31443298969072164, 0.29832474226804123, 0.2770618556701031, 0.3286082474226804, 0.3279639175257732, 0.32989690721649484, 0.3582474226804124, 0.36211340206185566, 0.3588917525773196, 0.35760309278350516, 0.2699742268041237, 0.38079896907216493, 0.6378865979381443, 0.7551546391752577, 0.9329896907216495, 0.6868556701030928, 0.523840206185567, 0.34600515463917525, 0.27448453608247425, 0.2712628865979381, 0.26868556701030927, 0.2693298969072165, 0.26868556701030927, 0.26804123711340205, 0.26739690721649484, 0.26417525773195877, 0.2615979381443299, 0.25773195876288657, 0.25837628865979384, 0.25708762886597936, 0.25644329896907214, 0.2551546391752577, 0.2545103092783505, 0.4162371134020619, 0.2603092783505155, 0.27255154639175255, 0.2809278350515464, 0.7229381443298969, 0.31121134020618557, 0.3086340206185567, 0.5360824742268041, 0.8795103092783505, 0.7300257731958762, 0.3859536082474227, 0.3079896907216495, 0.30412371134020616, 0.29961340206185566, 0.29381443298969073, 0.28865979381443296, 0.2854381443298969, 0.28737113402061853, 0.27899484536082475, 0.27448453608247425, 0.913659793814433, 0.8981958762886598, 0.27384020618556704, 0.26804123711340205, 0.24871134020618557, 0.23260309278350516, 0.2184278350515464, 0.19780927835051546, 0.17654639175257733, 0.13595360824742267, 0.8666237113402062, 0.9104381443298969, 0.9207474226804123, 0.9387886597938144, 0.9400773195876289, 0.9355670103092784, 0.9175257731958762, 0.9072164948453608, 0.8640463917525774, 0.13466494845360824, 0.1333762886597938, 0.13402061855670103, 0.12693298969072164, 0.12048969072164949, 0.11404639175257732, 0.11211340206185567, 0.10760309278350516, 0.10631443298969072, 0.10695876288659793, 0.1018041237113402, 0.11920103092783506, 0.7222938144329897, 0.8279639175257731, 0.9362113402061856, 0.9155927835051546, 0.7538659793814433, 0.38337628865979384, 0.09342783505154639, 0.06829896907216494, 0.047036082474226804, 0.037371134020618556, 0.028350515463917526, 0.015463917525773196, 0.013530927835051547, 0.012242268041237113, 0.012242268041237113, 0.009664948453608248, 0.00902061855670103, 0.00902061855670103, 0.008376288659793814, 0.008376288659793814, 0.008376288659793814, 0.008376288659793814, 0.008376288659793814, 0.008376288659793814, 0.008376288659793814, 0.007087628865979381, 0.007087628865979381, 0.007087628865979381, 0.007087628865979381, 0.007087628865979381, 0.007731958762886598, 0.0586340206185567, 0.4961340206185567, 0.9072164948453608, 0.604381443298969, 0.42847938144329895, 0.06701030927835051, 0.42332474226804123, 0.08118556701030928, 0.09342783505154639, 0.09020618556701031, 0.0895618556701031, 0.0895618556701031, 0.09471649484536082, 0.09213917525773196, 0.09342783505154639, 0.8208762886597938, 0.08440721649484537, 0.08376288659793814, 0.08311855670103092, 0.07925257731958762, 0.07474226804123711, 0.11855670103092783, 0.04832474226804124, 0.529639175257732, 0.7145618556701031, 0.7042525773195877, 0.7145618556701031, 0.6475515463917526, 0.8859536082474226, 0.8240979381443299, 0.0663659793814433, 0.039304123711340205, 0.037371134020618556, 0.03608247422680412, 0.03801546391752577, 0.04188144329896907, 0.04188144329896907, 0.037371134020618556, 0.7222938144329897, 0.8833762886597938, 0.9246134020618557, 0.9304123711340206, 0.9426546391752577, 0.9304123711340206, 0.9291237113402062, 0.8885309278350515, 0.7809278350515464, 0.720360824742268, 0.04445876288659794, 0.04639175257731959, 0.047036082474226804, 0.04768041237113402, 0.04961340206185567, 0.05025773195876289, 0.055412371134020616, 0.05605670103092784, 0.061855670103092786, 0.0740979381443299, 0.0818298969072165, 0.1134020618556701, 0.12048969072164949, 0.12693298969072164, 0.14304123711340205, 0.17525773195876287, 0.22358247422680413, 0.2957474226804124, 0.3788659793814433, 0.5509020618556701, 0.7880154639175257], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/HTH_12.gap.json b/pfam_gap_rates/HTH_12.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e612abdbc900fbedd159a7daeb2234db2497a008
--- /dev/null
+++ b/pfam_gap_rates/HTH_12.gap.json
@@ -0,0 +1 @@
+{"family": "HTH_12", "n_seqs": 194, "length": 70, "gap_rates": [0.7319587628865979, 0.20618556701030927, 0.1134020618556701, 0.09278350515463918, 0.08247422680412371, 0.05670103092783505, 0.05154639175257732, 0.02577319587628866, 0.015463917525773196, 0.020618556701030927, 0.020618556701030927, 0.020618556701030927, 0.05154639175257732, 0.005154639175257732, 0.005154639175257732, 0.0, 0.0, 0.005154639175257732, 0.005154639175257732, 0.005154639175257732, 0.005154639175257732, 0.0, 0.0, 0.015463917525773196, 0.015463917525773196, 0.010309278350515464, 0.6443298969072165, 0.015463917525773196, 0.010309278350515464, 0.010309278350515464, 0.005154639175257732, 0.5, 0.35051546391752575, 0.010309278350515464, 0.005154639175257732, 0.005154639175257732, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.634020618556701, 0.6907216494845361, 0.520618556701031, 0.0, 0.005154639175257732, 0.015463917525773196, 0.05154639175257732, 0.05154639175257732, 0.07731958762886598, 0.1134020618556701, 0.12886597938144329, 0.4690721649484536, 0.4639175257731959, 0.4845360824742268, 0.26804123711340205, 0.26804123711340205, 0.27319587628865977, 0.27835051546391754, 0.5412371134020618, 0.31958762886597936, 0.36082474226804123, 0.5103092783505154, 0.6391752577319587], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/HTH_19.gap.json b/pfam_gap_rates/HTH_19.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..82fd4b1f1042c28bbec8e445b47643d61ede8750
--- /dev/null
+++ b/pfam_gap_rates/HTH_19.gap.json
@@ -0,0 +1 @@
+{"family": "HTH_19", "n_seqs": 1854, "length": 68, "gap_rates": [0.378101402373247, 0.18878101402373246, 0.06850053937432578, 0.03344120819848975, 0.026429341963322545, 0.016720604099244876, 0.01348435814455232, 0.010787486515641856, 0.009708737864077669, 0.008629989212513484, 0.009169363538295576, 0.0048543689320388345, 0.002157497303128371, 0.002157497303128371, 0.0016181229773462784, 0.0016181229773462784, 0.0010787486515641855, 0.0005393743257820927, 0.0, 0.0, 0.012944983818770227, 0.006472491909385114, 0.0037756202804746495, 0.003236245954692557, 0.12944983818770225, 0.9174757281553398, 0.9439050701186623, 0.941747572815534, 0.9007551240560949, 0.0037756202804746495, 0.0016181229773462784, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.032362459546925564, 0.02912621359223301, 0.01348435814455232, 0.021574973031283712, 0.8333333333333334, 0.004314994606256742, 0.002696871628910464, 0.014563106796116505, 0.009708737864077669, 0.004314994606256742, 0.007551240560949299, 0.008629989212513484, 0.009708737864077669, 0.010787486515641856, 0.012944983818770227, 0.016181229773462782, 0.016720604099244876, 0.020496224379719527, 0.02319309600862999, 0.02481121898597627, 0.03290183387270766, 0.040453074433656956, 0.05771305285868392, 0.07335490830636461, 0.09492988133764833, 0.1111111111111111, 0.16774541531823084, 0.3451995685005394, 0.48327939590075514, 0.6170442286947141, 0.7713052858683926], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/HTH_27.gap.json b/pfam_gap_rates/HTH_27.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..22194af46638d2317e6734dc5120380fda00f328
--- /dev/null
+++ b/pfam_gap_rates/HTH_27.gap.json
@@ -0,0 +1 @@
+{"family": "HTH_27", "n_seqs": 818, "length": 72, "gap_rates": [0.7591687041564792, 0.5171149144254279, 0.4547677261613692, 0.38386308068459657, 0.33863080684596575, 0.3056234718826406, 0.2701711491442543, 0.2310513447432763, 0.2041564792176039, 0.19070904645476772, 0.18092909535452323, 0.16625916870415647, 0.15770171149144255, 0.941320293398533, 0.9229828850855746, 0.6797066014669927, 0.39975550122249387, 0.10146699266503667, 0.08068459657701711, 0.07090464547677261, 0.05745721271393643, 0.05378973105134474, 0.044009779951100246, 0.9339853300733496, 0.03178484107579462, 0.02689486552567237, 0.02444987775061125, 0.02444987775061125, 0.023227383863080684, 0.022004889975550123, 0.018337408312958436, 0.014669926650366748, 0.013447432762836185, 0.012224938875305624, 0.011002444987775062, 0.007334963325183374, 0.007334963325183374, 0.004889975550122249, 0.004889975550122249, 0.8960880195599022, 0.003667481662591687, 0.003667481662591687, 0.0024449877750611247, 0.0024449877750611247, 0.0024449877750611247, 0.0024449877750611247, 0.0024449877750611247, 0.0012224938875305623, 0.0, 0.0, 0.0, 0.0, 0.08312958435207823, 0.06968215158924206, 0.05867970660146699, 0.03300733496332518, 0.03178484107579462, 0.08068459657701711, 0.06356968215158924, 0.05012224938875306, 0.017114914425427872, 0.013447432762836185, 0.014669926650366748, 0.01589242053789731, 0.017114914425427872, 0.018337408312958436, 0.023227383863080684, 0.022004889975550123, 0.029339853300733496, 0.037897310513447434, 0.05012224938875306, 0.1198044009779951], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/HTH_5.gap.json b/pfam_gap_rates/HTH_5.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e2ae964490d1edebf7e6a546fc07edbdaca6f37b
--- /dev/null
+++ b/pfam_gap_rates/HTH_5.gap.json
@@ -0,0 +1 @@
+{"family": "HTH_5", "n_seqs": 5000, "length": 50, "gap_rates": [0.36, 0.1712, 0.0904, 0.0628, 0.0556, 0.044, 0.0378, 0.0304, 0.028, 0.024, 0.0214, 0.0204, 0.0174, 0.9286, 0.948, 0.7788, 0.015, 0.013, 0.009, 0.0066, 0.0044, 0.0032, 0.0024, 0.002, 0.0012, 0.0012, 0.0044, 0.0006, 0.0002, 0.0004, 0.0008, 0.0008, 0.0008, 0.001, 0.001, 0.0014, 0.002, 0.0026, 0.004, 0.0046, 0.0056, 0.0064, 0.0086, 0.0126, 0.0186, 0.0272, 0.0358, 0.051, 0.2954, 0.8022], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/HTH_Crp_2.gap.json b/pfam_gap_rates/HTH_Crp_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..341b9df21a2993fac4e5c47326f3f94d33a17326
--- /dev/null
+++ b/pfam_gap_rates/HTH_Crp_2.gap.json
@@ -0,0 +1 @@
+{"family": "HTH_Crp_2", "n_seqs": 4927, "length": 92, "gap_rates": [0.4925918408768013, 0.15668763953724377, 0.11102090521615587, 0.09843718286990055, 0.08483864420539883, 0.07042825248629998, 0.06251268520397808, 0.06697787700426223, 0.09031865232392937, 0.0811853054597118, 0.9050131926121372, 0.927339151613558, 0.9445910290237467, 0.9153643190582504, 0.8873553886746499, 0.07611122386847981, 0.08849198295108586, 0.08991272579663082, 0.8185508422975442, 0.8938502131114269, 0.9149583925309519, 0.86198498071849, 0.8073878627968337, 0.1818550842297544, 0.12380759082606048, 0.7091536431905825, 0.8603612746092957, 0.908463568094175, 0.790135985386645, 0.6521209661051349, 0.10168459508828902, 0.5591637913537649, 0.8958798457479197, 0.7743048508220012, 0.17941952506596306, 0.08565049725999595, 0.04769636695758068, 0.08341790135985387, 0.013598538664501725, 0.014207428455449563, 0.006697787700426223, 0.0028414856910899127, 0.0018266693728435153, 0.0016237061091942358, 0.0012177795818956768, 0.0006088897909478384, 0.00040592652729855896, 0.0006088897909478384, 0.00040592652729855896, 0.00040592652729855896, 0.00020296326364927948, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.00020296326364927948, 0.0006088897909478384, 0.0006088897909478384, 0.0008118530545971179, 0.0008118530545971179, 0.0012177795818956768, 0.002232595900142074, 0.0024355591637913536, 0.0036533387456870307, 0.9056220824030851, 0.3448345849401258, 0.014410391719098843, 0.9271361883499086, 0.02293484879236858, 0.9088694946214735, 0.10127866856099046, 0.20905216155875786, 0.6204586969758473, 0.04769636695758068, 0.05480008118530546, 0.06981936269535215, 0.10594682362492389, 0.14897503551857114, 0.17576618632027602, 0.19809214532169678, 0.2165618023137812, 0.2293484879236858, 0.2766389283539679, 0.40044651918002844, 0.7759285569311954], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/HTH_Tnp_Tc5.gap.json b/pfam_gap_rates/HTH_Tnp_Tc5.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b1578469fa01f447adabe597519fd3734019fc79
--- /dev/null
+++ b/pfam_gap_rates/HTH_Tnp_Tc5.gap.json
@@ -0,0 +1 @@
+{"family": "HTH_Tnp_Tc5", "n_seqs": 1732, "length": 72, "gap_rates": [0.7338337182448037, 0.43187066974595845, 0.2557736720554272, 0.13914549653579678, 0.1125866050808314, 0.09988452655889145, 0.08775981524249422, 0.0825635103926097, 0.075635103926097, 0.07217090069284064, 0.06755196304849885, 0.06408775981524249, 0.061200923787528866, 0.057736720554272515, 0.08083140877598152, 0.06004618937644342, 0.06004618937644342, 0.042725173210161664, 0.037528868360277134, 0.03579676674364896, 0.032909930715935336, 0.030600461893764433, 0.027136258660508082, 0.024826789838337183, 0.02020785219399538, 0.016166281755196306, 0.012702078521939953, 0.013279445727482679, 0.013856812933025405, 0.009237875288683603, 0.009237875288683603, 0.009237875288683603, 0.009815242494226328, 0.01558891454965358, 0.23672055427251731, 0.8331408775981525, 0.8724018475750578, 0.9312933025404158, 0.8920323325635104, 0.8504618937644342, 0.7251732101616628, 0.4693995381062356, 0.44803695150115475, 0.4959584295612009, 0.2528868360277136, 0.21420323325635104, 0.08314087759815242, 0.06986143187066975, 0.05600461893764434, 0.03579676674364896, 0.025404157043879907, 0.025981524249422634, 0.025981524249422634, 0.026558891454965358, 0.028868360277136258, 0.030600461893764433, 0.030600461893764433, 0.03117782909930716, 0.034064665127020784, 0.03695150115473441, 0.04041570438799076, 0.040993071593533485, 0.04157043879907621, 0.04561200923787529, 0.050808314087759814, 0.059468822170900694, 0.8296766743648961, 0.10681293302540416, 0.1651270207852194, 0.28868360277136257, 0.4896073903002309, 0.7286374133949192], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/HWE_HK.gap.json b/pfam_gap_rates/HWE_HK.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..8085caea5642369b62bf54883423e3595fd04aa5
--- /dev/null
+++ b/pfam_gap_rates/HWE_HK.gap.json
@@ -0,0 +1 @@
+{"family": "HWE_HK", "n_seqs": 533, "length": 89, "gap_rates": [0.009380863039399626, 0.00375234521575985, 0.00375234521575985, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.06566604127579738, 0.06378986866791744, 0.08067542213883677, 0.04690431519699812, 0.0225140712945591, 0.013133208255159476, 0.013133208255159476, 0.01125703564727955, 0.009380863039399626, 0.013133208255159476, 0.005628517823639775, 0.001876172607879925, 0.001876172607879925, 0.001876172607879925, 0.001876172607879925, 0.001876172607879925, 0.001876172607879925, 0.001876172607879925, 0.001876172607879925, 0.001876172607879925, 0.001876172607879925, 0.001876172607879925, 0.001876172607879925, 0.001876172607879925, 0.005628517823639775, 0.005628517823639775, 0.005628517823639775, 0.9099437148217636, 0.9324577861163227, 0.9136960600375235, 0.8930581613508443, 0.0075046904315197, 0.01125703564727955, 0.01125703564727955, 0.01125703564727955, 0.0075046904315197, 0.0300187617260788, 0.0075046904315197, 0.01125703564727955, 0.009380863039399626, 0.0075046904315197, 0.0075046904315197, 0.0075046904315197, 0.0075046904315197, 0.0075046904315197, 0.0075046904315197, 0.0075046904315197, 0.0075046904315197, 0.0075046904315197, 0.0075046904315197, 0.009380863039399626, 0.009380863039399626, 0.009380863039399626, 0.009380863039399626, 0.12382739212007504, 0.38649155722326456, 0.2570356472795497, 0.9324577861163227, 0.926829268292683, 0.06566604127579738, 0.05065666041275797, 0.0450281425891182, 0.0450281425891182, 0.0525328330206379, 0.054409005628517824, 0.06191369606003752, 0.075046904315197, 0.15384615384615385, 0.6735459662288931], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/H_PPase.gap.json b/pfam_gap_rates/H_PPase.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..6ea4544e102e23370349ef33342cc573474d961a
--- /dev/null
+++ b/pfam_gap_rates/H_PPase.gap.json
@@ -0,0 +1 @@
+{"family": "H_PPase", "n_seqs": 1530, "length": 804, "gap_rates": [0.569281045751634, 0.29411764705882354, 0.2457516339869281, 0.23006535947712417, 0.22483660130718955, 0.22156862745098038, 0.2196078431372549, 0.21764705882352942, 0.2169934640522876, 0.2169934640522876, 0.2169934640522876, 0.21568627450980393, 0.21568627450980393, 0.2150326797385621, 0.2130718954248366, 0.21045751633986928, 0.20718954248366014, 0.20261437908496732, 0.1934640522875817, 0.2281045751633987, 0.16143790849673204, 0.9235294117647059, 0.9235294117647059, 0.9248366013071896, 0.9281045751633987, 0.9294117647058824, 0.9294117647058824, 0.9320261437908497, 0.9366013071895425, 0.9450980392156862, 0.9477124183006536, 0.949673202614379, 0.9490196078431372, 0.9470588235294117, 0.938562091503268, 0.9326797385620915, 0.930718954248366, 0.9294117647058824, 0.9287581699346406, 0.9274509803921569, 0.9241830065359478, 0.9235294117647059, 0.9235294117647059, 0.15294117647058825, 0.1477124183006536, 0.1392156862745098, 0.13725490196078433, 0.13660130718954247, 0.13594771241830064, 0.13594771241830064, 0.13594771241830064, 0.13594771241830064, 0.13594771241830064, 0.134640522875817, 0.1326797385620915, 0.13137254901960785, 0.12941176470588237, 0.1287581699346405, 0.1287581699346405, 0.12745098039215685, 0.12679738562091503, 0.12679738562091503, 0.12679738562091503, 0.12745098039215685, 0.12549019607843137, 0.12483660130718954, 0.12418300653594772, 0.12352941176470589, 0.12352941176470589, 0.12026143790849673, 0.11830065359477124, 0.11764705882352941, 0.11699346405228758, 0.11699346405228758, 0.11699346405228758, 0.11699346405228758, 0.11764705882352941, 0.11764705882352941, 0.11764705882352941, 0.12091503267973856, 0.12091503267973856, 0.47124183006535947, 0.4869281045751634, 0.1542483660130719, 0.5509803921568628, 0.5967320261437908, 0.7300653594771241, 0.769281045751634, 0.8176470588235294, 0.8300653594771242, 0.8411764705882353, 0.85359477124183, 0.8869281045751634, 0.9071895424836601, 0.9124183006535947, 0.9248366013071896, 0.9294117647058824, 0.9156862745098039, 0.9091503267973856, 0.9, 0.8601307189542484, 0.8457516339869281, 0.8352941176470589, 0.8261437908496732, 0.7888888888888889, 0.7549019607843137, 0.7156862745098039, 0.5549019607843138, 0.5405228758169934, 0.11895424836601307, 0.12026143790849673, 0.11633986928104575, 0.11633986928104575, 0.11633986928104575, 0.11568627450980393, 0.11437908496732026, 0.11437908496732026, 0.11437908496732026, 0.11437908496732026, 0.11437908496732026, 0.11503267973856209, 0.11503267973856209, 0.11503267973856209, 0.11503267973856209, 0.11503267973856209, 0.11568627450980393, 0.11503267973856209, 0.11503267973856209, 0.11503267973856209, 0.11503267973856209, 0.11503267973856209, 0.11503267973856209, 0.1130718954248366, 0.11241830065359477, 0.11241830065359477, 0.11241830065359477, 0.11241830065359477, 0.11241830065359477, 0.1130718954248366, 0.1130718954248366, 0.1130718954248366, 0.11241830065359477, 0.11176470588235295, 0.11176470588235295, 0.11241830065359477, 0.11241830065359477, 0.1130718954248366, 0.9398692810457516, 0.1130718954248366, 0.1130718954248366, 0.8392156862745098, 0.11241830065359477, 0.11176470588235295, 0.1130718954248366, 0.1130718954248366, 0.1130718954248366, 0.11241830065359477, 0.1111111111111111, 0.11176470588235295, 0.11176470588235295, 0.1111111111111111, 0.1111111111111111, 0.1111111111111111, 0.1111111111111111, 0.1111111111111111, 0.11045751633986928, 0.10784313725490197, 0.10784313725490197, 0.10784313725490197, 0.10784313725490197, 0.10784313725490197, 0.10718954248366012, 0.10718954248366012, 0.1065359477124183, 0.10588235294117647, 0.10588235294117647, 0.10588235294117647, 0.10588235294117647, 0.1065359477124183, 0.1065359477124183, 0.1065359477124183, 0.10522875816993464, 0.10522875816993464, 0.10522875816993464, 0.10588235294117647, 0.10588235294117647, 0.1065359477124183, 0.1065359477124183, 0.692156862745098, 0.8091503267973856, 0.8790849673202614, 0.9490196078431372, 0.9163398692810457, 0.8490196078431372, 0.7764705882352941, 0.6627450980392157, 0.5411764705882353, 0.4869281045751634, 0.46339869281045754, 0.4522875816993464, 0.4411764705882353, 0.40522875816993464, 0.36209150326797385, 0.2777777777777778, 0.2542483660130719, 0.1065359477124183, 0.10326797385620914, 0.10196078431372549, 0.10196078431372549, 0.10196078431372549, 0.10065359477124183, 0.10065359477124183, 0.10065359477124183, 0.10065359477124183, 0.10065359477124183, 0.10065359477124183, 0.10065359477124183, 0.10065359477124183, 0.09934640522875816, 0.09934640522875816, 0.09738562091503268, 0.09673202614379085, 0.09803921568627451, 0.09803921568627451, 0.09803921568627451, 0.09803921568627451, 0.09803921568627451, 0.09869281045751634, 0.09803921568627451, 0.09934640522875816, 0.09934640522875816, 0.09934640522875816, 0.09934640522875816, 0.1, 0.10065359477124183, 0.1, 0.10065359477124183, 0.10130718954248366, 0.10130718954248366, 0.10196078431372549, 0.10261437908496732, 0.14052287581699346, 0.10588235294117647, 0.10522875816993464, 0.10392156862745099, 0.10457516339869281, 0.10326797385620914, 0.10326797385620914, 0.10392156862745099, 0.10457516339869281, 0.10457516339869281, 0.10457516339869281, 0.10522875816993464, 0.10457516339869281, 0.10457516339869281, 0.10457516339869281, 0.10392156862745099, 0.10196078431372549, 0.10457516339869281, 0.10457516339869281, 0.10457516339869281, 0.10392156862745099, 0.10326797385620914, 0.10326797385620914, 0.10261437908496732, 0.10326797385620914, 0.10261437908496732, 0.10261437908496732, 0.10326797385620914, 0.10326797385620914, 0.10326797385620914, 0.10326797385620914, 0.10065359477124183, 0.10065359477124183, 0.09869281045751634, 0.09803921568627451, 0.09934640522875816, 0.09934640522875816, 0.09934640522875816, 0.09869281045751634, 0.09869281045751634, 0.09869281045751634, 0.09869281045751634, 0.09738562091503268, 0.09738562091503268, 0.09738562091503268, 0.09738562091503268, 0.09607843137254903, 0.09607843137254903, 0.09607843137254903, 0.09673202614379085, 0.09607843137254903, 0.10457516339869281, 0.11176470588235295, 0.29215686274509806, 0.4830065359477124, 0.7241830065359477, 0.8529411764705882, 0.9071895424836601, 0.9359477124183007, 0.9287581699346406, 0.8810457516339869, 0.8013071895424837, 0.5588235294117647, 0.403921568627451, 0.2411764705882353, 0.10588235294117647, 0.10130718954248366, 0.09607843137254903, 0.09869281045751634, 0.09803921568627451, 0.09673202614379085, 0.09607843137254903, 0.09542483660130718, 0.09542483660130718, 0.09542483660130718, 0.09542483660130718, 0.09607843137254903, 0.09477124183006536, 0.09477124183006536, 0.09542483660130718, 0.09411764705882353, 0.09411764705882353, 0.09411764705882353, 0.09411764705882353, 0.0934640522875817, 0.0934640522875817, 0.0934640522875817, 0.0934640522875817, 0.09281045751633987, 0.09281045751633987, 0.09281045751633987, 0.09281045751633987, 0.0934640522875817, 0.1803921568627451, 0.1980392156862745, 0.14705882352941177, 0.16209150326797386, 0.20718954248366014, 0.5424836601307189, 0.6084967320261437, 0.9372549019607843, 0.6686274509803921, 0.6718954248366014, 0.6830065359477124, 0.5751633986928104, 0.2725490196078431, 0.15294117647058825, 0.10130718954248366, 0.1, 0.09542483660130718, 0.09477124183006536, 0.09477124183006536, 0.09477124183006536, 0.09477124183006536, 0.09477124183006536, 0.09477124183006536, 0.09477124183006536, 0.09477124183006536, 0.09477124183006536, 0.09477124183006536, 0.09477124183006536, 0.09477124183006536, 0.09542483660130718, 0.09869281045751634, 0.09803921568627451, 0.09607843137254903, 0.09607843137254903, 0.10392156862745099, 0.10196078431372549, 0.1, 0.1, 0.10065359477124183, 0.10130718954248366, 0.09803921568627451, 0.38235294117647056, 0.41830065359477125, 0.5509803921568628, 0.5901960784313726, 0.6705882352941176, 0.7477124183006536, 0.8588235294117647, 0.903921568627451, 0.9274509803921569, 0.9150326797385621, 0.8901960784313725, 0.7745098039215687, 0.7058823529411765, 0.6130718954248366, 0.5718954248366013, 0.49084967320261436, 0.3954248366013072, 0.36666666666666664, 0.12418300653594772, 0.2954248366013072, 0.24248366013071895, 0.09869281045751634, 0.09673202614379085, 0.09542483660130718, 0.09477124183006536, 0.09477124183006536, 0.09411764705882353, 0.09411764705882353, 0.0934640522875817, 0.0934640522875817, 0.0934640522875817, 0.0934640522875817, 0.0934640522875817, 0.09281045751633987, 0.0934640522875817, 0.0934640522875817, 0.0934640522875817, 0.09411764705882353, 0.09411764705882353, 0.09411764705882353, 0.09542483660130718, 0.09542483660130718, 0.09477124183006536, 0.09477124183006536, 0.09411764705882353, 0.09477124183006536, 0.09542483660130718, 0.09673202614379085, 0.09607843137254903, 0.09673202614379085, 0.15620915032679739, 0.14640522875816994, 0.09869281045751634, 0.09869281045751634, 0.09869281045751634, 0.09869281045751634, 0.09934640522875816, 0.09934640522875816, 0.09934640522875816, 0.10130718954248366, 0.10130718954248366, 0.10130718954248366, 0.10392156862745099, 0.10522875816993464, 0.10457516339869281, 0.10326797385620914, 0.10326797385620914, 0.10261437908496732, 0.10196078431372549, 0.1, 0.09934640522875816, 0.09934640522875816, 0.09869281045751634, 0.09803921568627451, 0.09869281045751634, 0.09803921568627451, 0.1, 0.09934640522875816, 0.09934640522875816, 0.09934640522875816, 0.09738562091503268, 0.09738562091503268, 0.09738562091503268, 0.09869281045751634, 0.09934640522875816, 0.1, 0.1, 0.09869281045751634, 0.09673202614379085, 0.09673202614379085, 0.09673202614379085, 0.09607843137254903, 0.09477124183006536, 0.09477124183006536, 0.09477124183006536, 0.09477124183006536, 0.09542483660130718, 0.09542483660130718, 0.09542483660130718, 0.7392156862745098, 0.7405228758169935, 0.7503267973856209, 0.7836601307189542, 0.8490196078431372, 0.9006535947712418, 0.9267973856209151, 0.9104575163398693, 0.8718954248366013, 0.8418300653594771, 0.765359477124183, 0.7418300653594772, 0.7398692810457517, 0.7372549019607844, 0.09542483660130718, 0.938562091503268, 0.9424836601307189, 0.9431372549019608, 0.9392156862745098, 0.9359477124183007, 0.09281045751633987, 0.09281045751633987, 0.0934640522875817, 0.09411764705882353, 0.0934640522875817, 0.0934640522875817, 0.0934640522875817, 0.0934640522875817, 0.0934640522875817, 0.09411764705882353, 0.09281045751633987, 0.09281045751633987, 0.09281045751633987, 0.09281045751633987, 0.0934640522875817, 0.0934640522875817, 0.09215686274509804, 0.09215686274509804, 0.09215686274509804, 0.09215686274509804, 0.09281045751633987, 0.09411764705882353, 0.0934640522875817, 0.09411764705882353, 0.09477124183006536, 0.09542483660130718, 0.09542483660130718, 0.09477124183006536, 0.09477124183006536, 0.09542483660130718, 0.09542483660130718, 0.09542483660130718, 0.09542483660130718, 0.09411764705882353, 0.09477124183006536, 0.09477124183006536, 0.09411764705882353, 0.09411764705882353, 0.9392156862745098, 0.09477124183006536, 0.09542483660130718, 0.09673202614379085, 0.1, 0.09803921568627451, 0.09869281045751634, 0.09738562091503268, 0.09542483660130718, 0.09477124183006536, 0.09673202614379085, 0.09738562091503268, 0.09738562091503268, 0.09738562091503268, 0.09738562091503268, 0.09607843137254903, 0.09607843137254903, 0.09411764705882353, 0.09411764705882353, 0.0934640522875817, 0.09281045751633987, 0.0915032679738562, 0.09084967320261438, 0.09084967320261438, 0.09084967320261438, 0.09019607843137255, 0.0915032679738562, 0.09215686274509804, 0.09215686274509804, 0.09215686274509804, 0.0915032679738562, 0.09215686274509804, 0.09215686274509804, 0.0915032679738562, 0.0915032679738562, 0.0915032679738562, 0.09281045751633987, 0.09281045751633987, 0.09281045751633987, 0.09215686274509804, 0.09215686274509804, 0.09281045751633987, 0.09281045751633987, 0.09281045751633987, 0.09281045751633987, 0.0934640522875817, 0.09411764705882353, 0.4294117647058823, 0.4562091503267974, 0.6209150326797386, 0.7679738562091504, 0.8006535947712419, 0.8326797385620915, 0.8568627450980392, 0.8869281045751634, 0.9196078431372549, 0.9352941176470588, 0.9450980392156862, 0.949673202614379, 0.9490196078431372, 0.9411764705882353, 0.9320261437908497, 0.9098039215686274, 0.8647058823529412, 0.8431372549019608, 0.8254901960784313, 0.7856209150326797, 0.7444444444444445, 0.5823529411764706, 0.45098039215686275, 0.4169934640522876, 0.09607843137254903, 0.10457516339869281, 0.09607843137254903, 0.09542483660130718, 0.09542483660130718, 0.09542483660130718, 0.09542483660130718, 0.09477124183006536, 0.09477124183006536, 0.09477124183006536, 0.09477124183006536, 0.09477124183006536, 0.09477124183006536, 0.09411764705882353, 0.0934640522875817, 0.0934640522875817, 0.09477124183006536, 0.09477124183006536, 0.09477124183006536, 0.09477124183006536, 0.09542483660130718, 0.0934640522875817, 0.09281045751633987, 0.09281045751633987, 0.09281045751633987, 0.09281045751633987, 0.09281045751633987, 0.09215686274509804, 0.09281045751633987, 0.09215686274509804, 0.0915032679738562, 0.08954248366013072, 0.09019607843137255, 0.09084967320261438, 0.08954248366013072, 0.09019607843137255, 0.09019607843137255, 0.0915032679738562, 0.09281045751633987, 0.09281045751633987, 0.09477124183006536, 0.0934640522875817, 0.0934640522875817, 0.0934640522875817, 0.0915032679738562, 0.09215686274509804, 0.09542483660130718, 0.09411764705882353, 0.09477124183006536, 0.09542483660130718, 0.09869281045751634, 0.11503267973856209, 0.12810457516339868, 0.14705882352941177, 0.11176470588235295, 0.11241830065359477, 0.10457516339869281, 0.09869281045751634, 0.10196078431372549, 0.10522875816993464, 0.09934640522875816, 0.09738562091503268, 0.09542483660130718, 0.09477124183006536, 0.09411764705882353, 0.0934640522875817, 0.0934640522875817, 0.09281045751633987, 0.09281045751633987, 0.09215686274509804, 0.09215686274509804, 0.0934640522875817, 0.09281045751633987, 0.09281045751633987, 0.09215686274509804, 0.09215686274509804, 0.09215686274509804, 0.0915032679738562, 0.09084967320261438, 0.09019607843137255, 0.09019607843137255, 0.09019607843137255, 0.09084967320261438, 0.09084967320261438, 0.09084967320261438, 0.09019607843137255, 0.09019607843137255, 0.09019607843137255, 0.09084967320261438, 0.09084967320261438, 0.09084967320261438, 0.09084967320261438, 0.0915032679738562, 0.0915032679738562, 0.09281045751633987, 0.09215686274509804, 0.09215686274509804, 0.14640522875816994, 0.8176470588235294, 0.822875816993464, 0.834640522875817, 0.8418300653594771, 0.9372549019607843, 0.9418300653594771, 0.9398692810457516, 0.9176470588235294, 0.8352941176470589, 0.8307189542483661, 0.8176470588235294, 0.8176470588235294, 0.0934640522875817, 0.0934640522875817, 0.0934640522875817, 0.0934640522875817, 0.09411764705882353, 0.09411764705882353, 0.09411764705882353, 0.09477124183006536, 0.09542483660130718, 0.09411764705882353, 0.09477124183006536, 0.09542483660130718, 0.09477124183006536, 0.09477124183006536, 0.09542483660130718, 0.09542483660130718, 0.09477124183006536, 0.09477124183006536, 0.09607843137254903, 0.09869281045751634, 0.09869281045751634, 0.09869281045751634, 0.09803921568627451, 0.09803921568627451, 0.09803921568627451, 0.09738562091503268, 0.09738562091503268, 0.09738562091503268, 0.09738562091503268, 0.09738562091503268, 0.09738562091503268, 0.09803921568627451, 0.09803921568627451, 0.09803921568627451, 0.09934640522875816, 0.09869281045751634, 0.1, 0.1, 0.10065359477124183, 0.1503267973856209, 0.8392156862745098, 0.8450980392156863, 0.888235294117647, 0.8568627450980392, 0.8411764705882353, 0.8392156862745098, 0.11045751633986928, 0.10130718954248366, 0.10196078431372549, 0.10392156862745099, 0.10196078431372549, 0.10261437908496732, 0.10326797385620914, 0.10326797385620914, 0.10392156862745099, 0.10392156862745099, 0.10392156862745099, 0.10457516339869281, 0.10392156862745099, 0.10588235294117647, 0.10588235294117647, 0.10588235294117647, 0.1065359477124183, 0.10588235294117647, 0.1084967320261438, 0.1084967320261438, 0.10980392156862745, 0.10980392156862745, 0.10980392156862745, 0.11045751633986928, 0.1111111111111111, 0.11176470588235295, 0.11176470588235295, 0.11241830065359477, 0.11241830065359477, 0.1130718954248366, 0.1130718954248366, 0.1130718954248366, 0.11372549019607843, 0.11372549019607843, 0.11503267973856209, 0.11568627450980393, 0.11568627450980393, 0.11568627450980393, 0.11568627450980393, 0.11633986928104575, 0.11699346405228758, 0.11699346405228758, 0.11764705882352941, 0.12352941176470589, 0.3581699346405229], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Haem_bd.gap.json b/pfam_gap_rates/Haem_bd.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..5f63eda49c4ae7f4c65871b711e28ebe49434574
--- /dev/null
+++ b/pfam_gap_rates/Haem_bd.gap.json
@@ -0,0 +1 @@
+{"family": "Haem_bd", "n_seqs": 149, "length": 142, "gap_rates": [0.7114093959731543, 0.3624161073825503, 0.26174496644295303, 0.2348993288590604, 0.2348993288590604, 0.2348993288590604, 0.22818791946308725, 0.21476510067114093, 0.21476510067114093, 0.21476510067114093, 0.2080536912751678, 0.2080536912751678, 0.20134228187919462, 0.2080536912751678, 0.2080536912751678, 0.20134228187919462, 0.2080536912751678, 0.8926174496644296, 0.8053691275167785, 0.3825503355704698, 0.3221476510067114, 0.3221476510067114, 0.28859060402684567, 0.2751677852348993, 0.2550335570469799, 0.174496644295302, 0.26174496644295303, 0.2684563758389262, 0.24161073825503357, 0.20134228187919462, 0.174496644295302, 0.06711409395973154, 0.06711409395973154, 0.06040268456375839, 0.06040268456375839, 0.06040268456375839, 0.06040268456375839, 0.06040268456375839, 0.06040268456375839, 0.06040268456375839, 0.8389261744966443, 0.06040268456375839, 0.06040268456375839, 0.06040268456375839, 0.06040268456375839, 0.06040268456375839, 0.06040268456375839, 0.06040268456375839, 0.06040268456375839, 0.06040268456375839, 0.06040268456375839, 0.06040268456375839, 0.06040268456375839, 0.06040268456375839, 0.0738255033557047, 0.0738255033557047, 0.0738255033557047, 0.0738255033557047, 0.0738255033557047, 0.0738255033557047, 0.0738255033557047, 0.08053691275167785, 0.0738255033557047, 0.0738255033557047, 0.0738255033557047, 0.0738255033557047, 0.0738255033557047, 0.06711409395973154, 0.06711409395973154, 0.06711409395973154, 0.06711409395973154, 0.06040268456375839, 0.04697986577181208, 0.040268456375838924, 0.03355704697986577, 0.03355704697986577, 0.026845637583892617, 0.03355704697986577, 0.03355704697986577, 0.03355704697986577, 0.03355704697986577, 0.03355704697986577, 0.03355704697986577, 0.03355704697986577, 0.06711409395973154, 0.087248322147651, 0.11409395973154363, 0.9395973154362416, 0.8053691275167785, 0.1342281879194631, 0.15436241610738255, 0.10738255033557047, 0.0738255033557047, 0.06040268456375839, 0.040268456375838924, 0.040268456375838924, 0.03355704697986577, 0.825503355704698, 0.8053691275167785, 0.026845637583892617, 0.026845637583892617, 0.026845637583892617, 0.026845637583892617, 0.026845637583892617, 0.026845637583892617, 0.020134228187919462, 0.020134228187919462, 0.020134228187919462, 0.020134228187919462, 0.06040268456375839, 0.020134228187919462, 0.020134228187919462, 0.020134228187919462, 0.020134228187919462, 0.026845637583892617, 0.026845637583892617, 0.026845637583892617, 0.026845637583892617, 0.026845637583892617, 0.026845637583892617, 0.9395973154362416, 0.9395973154362416, 0.020134228187919462, 0.020134228187919462, 0.020134228187919462, 0.04697986577181208, 0.04697986577181208, 0.020134228187919462, 0.020134228187919462, 0.020134228187919462, 0.020134228187919462, 0.020134228187919462, 0.020134228187919462, 0.020134228187919462, 0.020134228187919462, 0.020134228187919462, 0.026845637583892617, 0.03355704697986577, 0.04697986577181208, 0.09395973154362416, 0.2483221476510067, 0.9194630872483222], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Haem_oxygenas_2.gap.json b/pfam_gap_rates/Haem_oxygenas_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..8f87591886a74efb4e9501a9da1553d5f9da3d16
--- /dev/null
+++ b/pfam_gap_rates/Haem_oxygenas_2.gap.json
@@ -0,0 +1 @@
+{"family": "Haem_oxygenas_2", "n_seqs": 461, "length": 222, "gap_rates": [0.6876355748373102, 0.2841648590021692, 0.2039045553145336, 0.1822125813449024, 0.15835140997830802, 0.14316702819956617, 0.13665943600867678, 0.12364425162689804, 0.1193058568329718, 0.11496746203904555, 0.10845986984815618, 0.1019522776572668, 0.09544468546637744, 0.09544468546637744, 0.09544468546637744, 0.09544468546637744, 0.09544468546637744, 0.09327548806941431, 0.08893709327548807, 0.08459869848156182, 0.08459869848156182, 0.08676789587852494, 0.0824295010845987, 0.08026030368763558, 0.08026030368763558, 0.0737527114967462, 0.6984815618221258, 0.9414316702819957, 0.8763557483731019, 0.6572668112798264, 0.44685466377440347, 0.07592190889370933, 0.06073752711496746, 0.05856832971800434, 0.05422993492407809, 0.05422993492407809, 0.05422993492407809, 0.052060737527114966, 0.052060737527114966, 0.049891540130151846, 0.049891540130151846, 0.0455531453362256, 0.04338394793926247, 0.8286334056399133, 0.04121475054229935, 0.04121475054229935, 0.052060737527114966, 0.0911062906724512, 0.31453362255965295, 0.2993492407809111, 0.2993492407809111, 0.37093275488069416, 0.3383947939262473, 0.3275488069414317, 0.2885032537960954, 0.03253796095444685, 0.02386117136659436, 0.021691973969631236, 0.021691973969631236, 0.021691973969631236, 0.021691973969631236, 0.021691973969631236, 0.019522776572668113, 0.01735357917570499, 0.01735357917570499, 0.015184381778741865, 0.015184381778741865, 0.015184381778741865, 0.8741865509761388, 0.8828633405639913, 0.89587852494577, 0.8980477223427332, 0.9088937093275488, 0.913232104121475, 0.9154013015184381, 0.9154013015184381, 0.9175704989154013, 0.9175704989154013, 0.9262472885032538, 0.9262472885032538, 0.9262472885032538, 0.9262472885032538, 0.928416485900217, 0.9479392624728851, 0.9262472885032538, 0.9262472885032538, 0.9262472885032538, 0.9262472885032538, 0.9262472885032538, 0.9175704989154013, 0.9175704989154013, 0.9154013015184381, 0.9154013015184381, 0.9088937093275488, 0.9023861171366594, 0.8980477223427332, 0.8915401301518439, 0.8785249457700651, 0.8698481561822126, 0.03253796095444685, 0.026030368763557483, 0.03470715835140998, 0.02386117136659436, 0.02386117136659436, 0.03036876355748373, 0.028199566160520606, 0.028199566160520606, 0.049891540130151846, 0.049891540130151846, 0.04772234273318872, 0.04772234273318872, 0.6052060737527115, 0.2885032537960954, 0.1735357917570499, 0.14533622559652928, 0.10845986984815618, 0.10412147505422993, 0.09327548806941431, 0.09327548806941431, 0.09544468546637744, 0.10629067245119306, 0.13232104121475055, 0.14533622559652928, 0.14099783080260303, 0.11062906724511931, 0.1019522776572668, 0.09978308026030369, 0.09761388286334056, 0.0911062906724512, 0.08459869848156182, 0.08676789587852494, 0.09544468546637744, 0.913232104121475, 0.10412147505422993, 0.19739696312364424, 0.17787418655097614, 0.004338394793926247, 0.004338394793926247, 0.004338394793926247, 0.008676789587852495, 0.006507592190889371, 0.010845986984815618, 0.006507592190889371, 0.004338394793926247, 0.004338394793926247, 0.006507592190889371, 0.006507592190889371, 0.9219088937093276, 0.14316702819956617, 0.021691973969631236, 0.013015184381778741, 0.015184381778741865, 0.013015184381778741, 0.010845986984815618, 0.010845986984815618, 0.013015184381778741, 0.015184381778741865, 0.006507592190889371, 0.006507592190889371, 0.010845986984815618, 0.010845986984815618, 0.5856832971800434, 0.010845986984815618, 0.013015184381778741, 0.013015184381778741, 0.010845986984815618, 0.19522776572668113, 0.19522776572668113, 0.1648590021691974, 0.8937093275488069, 0.010845986984815618, 0.010845986984815618, 0.010845986984815618, 0.010845986984815618, 0.010845986984815618, 0.010845986984815618, 0.010845986984815618, 0.010845986984815618, 0.013015184381778741, 0.021691973969631236, 0.019522776572668113, 0.019522776572668113, 0.021691973969631236, 0.8698481561822126, 0.8785249457700651, 0.8568329718004338, 0.021691973969631236, 0.021691973969631236, 0.021691973969631236, 0.021691973969631236, 0.02386117136659436, 0.04772234273318872, 0.368763557483731, 0.0368763557483731, 0.03470715835140998, 0.039045553145336226, 0.0368763557483731, 0.0368763557483731, 0.04772234273318872, 0.04772234273318872, 0.04772234273318872, 0.08676789587852494, 0.16268980477223427, 0.4685466377440347, 0.37310195227765725, 0.14316702819956617, 0.10845986984815618, 0.10629067245119306, 0.11496746203904555, 0.11713665943600868, 0.12364425162689804, 0.13665943600867678, 0.14533622559652928, 0.1648590021691974, 0.19088937093275488, 0.22559652928416485, 0.3036876355748373, 0.3665943600867679, 0.4078091106290672, 0.4837310195227766, 0.6377440347071583, 0.913232104121475], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/HemY_N.gap.json b/pfam_gap_rates/HemY_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..501a6e96fb8dece2f7dfa65a0444da9d820f26cf
--- /dev/null
+++ b/pfam_gap_rates/HemY_N.gap.json
@@ -0,0 +1 @@
+{"family": "HemY_N", "n_seqs": 406, "length": 126, "gap_rates": [0.1330049261083744, 0.10837438423645321, 0.05172413793103448, 0.029556650246305417, 0.027093596059113302, 0.027093596059113302, 0.022167487684729065, 0.019704433497536946, 0.014778325123152709, 0.014778325123152709, 0.014778325123152709, 0.009852216748768473, 0.009852216748768473, 0.009852216748768473, 0.009852216748768473, 0.007389162561576354, 0.007389162561576354, 0.007389162561576354, 0.007389162561576354, 0.007389162561576354, 0.007389162561576354, 0.007389162561576354, 0.007389162561576354, 0.007389162561576354, 0.0049261083743842365, 0.0024630541871921183, 0.0024630541871921183, 0.0024630541871921183, 0.0024630541871921183, 0.0024630541871921183, 0.0024630541871921183, 0.0024630541871921183, 0.0024630541871921183, 0.0024630541871921183, 0.0024630541871921183, 0.0024630541871921183, 0.0024630541871921183, 0.0024630541871921183, 0.0024630541871921183, 0.0024630541871921183, 0.0049261083743842365, 0.0049261083743842365, 0.0024630541871921183, 0.8842364532019704, 0.8842364532019704, 0.8842364532019704, 0.8842364532019704, 0.8842364532019704, 0.8842364532019704, 0.8842364532019704, 0.05665024630541872, 0.04926108374384237, 0.04926108374384237, 0.04433497536945813, 0.04433497536945813, 0.04187192118226601, 0.04187192118226601, 0.019704433497536946, 0.009852216748768473, 0.009852216748768473, 0.007389162561576354, 0.0024630541871921183, 0.0024630541871921183, 0.0024630541871921183, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0024630541871921183, 0.0024630541871921183, 0.0024630541871921183, 0.0024630541871921183, 0.0024630541871921183, 0.0024630541871921183, 0.0024630541871921183, 0.0024630541871921183, 0.0024630541871921183, 0.0024630541871921183, 0.0024630541871921183, 0.0049261083743842365, 0.0049261083743842365, 0.0049261083743842365, 0.0049261083743842365, 0.0049261083743842365, 0.0049261083743842365, 0.0049261083743842365, 0.0049261083743842365, 0.007389162561576354, 0.019704433497536946, 0.014778325123152709, 0.012315270935960592, 0.014778325123152709, 0.014778325123152709, 0.8620689655172413, 0.9236453201970444, 0.8029556650246306, 0.029556650246305417, 0.059113300492610835, 0.034482758620689655, 0.019704433497536946, 0.9334975369458128, 0.9334975369458128, 0.9334975369458128, 0.9334975369458128, 0.9334975369458128, 0.9334975369458128, 0.9334975369458128, 0.9334975369458128, 0.9334975369458128, 0.019704433497536946, 0.024630541871921183, 0.027093596059113302, 0.027093596059113302, 0.029556650246305417, 0.03694581280788178, 0.046798029556650245, 0.06403940886699508, 0.07635467980295567, 0.11330049261083744, 0.29310344827586204, 0.5246305418719212], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Hemocyanin_N.gap.json b/pfam_gap_rates/Hemocyanin_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b6fda28ed5c0a89f387988b65eacc40f0e963180
--- /dev/null
+++ b/pfam_gap_rates/Hemocyanin_N.gap.json
@@ -0,0 +1 @@
+{"family": "Hemocyanin_N", "n_seqs": 187, "length": 127, "gap_rates": [0.6524064171122995, 0.5133689839572193, 0.44919786096256686, 0.4117647058823529, 0.31016042780748665, 0.24064171122994651, 0.20855614973262032, 0.20855614973262032, 0.18716577540106952, 0.18716577540106952, 0.18181818181818182, 0.18181818181818182, 0.17647058823529413, 0.17647058823529413, 0.17647058823529413, 0.17647058823529413, 0.17647058823529413, 0.17647058823529413, 0.17647058823529413, 0.8823529411764706, 0.1711229946524064, 0.1711229946524064, 0.1711229946524064, 0.1711229946524064, 0.1711229946524064, 0.17647058823529413, 0.1711229946524064, 0.1711229946524064, 0.1711229946524064, 0.1657754010695187, 0.1657754010695187, 0.1657754010695187, 0.8181818181818182, 0.8074866310160428, 0.16042780748663102, 0.17647058823529413, 0.1657754010695187, 0.16042780748663102, 0.39037433155080214, 0.37967914438502676, 0.16042780748663102, 0.39037433155080214, 0.39037433155080214, 0.3422459893048128, 0.33689839572192515, 0.1443850267379679, 0.13903743315508021, 0.12299465240641712, 0.12299465240641712, 0.16042780748663102, 0.29411764705882354, 0.32085561497326204, 0.13368983957219252, 0.08021390374331551, 0.06417112299465241, 0.06417112299465241, 0.06417112299465241, 0.06417112299465241, 0.058823529411764705, 0.4117647058823529, 0.03208556149732621, 0.03208556149732621, 0.026737967914438502, 0.026737967914438502, 0.026737967914438502, 0.026737967914438502, 0.026737967914438502, 0.026737967914438502, 0.026737967914438502, 0.03208556149732621, 0.0427807486631016, 0.0481283422459893, 0.0374331550802139, 0.03208556149732621, 0.03208556149732621, 0.026737967914438502, 0.026737967914438502, 0.026737967914438502, 0.026737967914438502, 0.026737967914438502, 0.026737967914438502, 0.026737967914438502, 0.03208556149732621, 0.0374331550802139, 0.0374331550802139, 0.0374331550802139, 0.0374331550802139, 0.0374331550802139, 0.0374331550802139, 0.026737967914438502, 0.03208556149732621, 0.0213903743315508, 0.026737967914438502, 0.026737967914438502, 0.03208556149732621, 0.03208556149732621, 0.026737967914438502, 0.026737967914438502, 0.026737967914438502, 0.026737967914438502, 0.026737967914438502, 0.026737967914438502, 0.026737967914438502, 0.026737967914438502, 0.03208556149732621, 0.03208556149732621, 0.03208556149732621, 0.03208556149732621, 0.03208556149732621, 0.03208556149732621, 0.03208556149732621, 0.03208556149732621, 0.03208556149732621, 0.03208556149732621, 0.0374331550802139, 0.0374331550802139, 0.0427807486631016, 0.0427807486631016, 0.0427807486631016, 0.0427807486631016, 0.0427807486631016, 0.0481283422459893, 0.053475935828877004, 0.058823529411764705, 0.058823529411764705, 0.11229946524064172, 0.6363636363636364], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/HpcH_HpaI.gap.json b/pfam_gap_rates/HpcH_HpaI.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..3459adc7de4c90dabe74007aea3ea7d0debacc52
--- /dev/null
+++ b/pfam_gap_rates/HpcH_HpaI.gap.json
@@ -0,0 +1 @@
+{"family": "HpcH_HpaI", "n_seqs": 2631, "length": 269, "gap_rates": [0.556442417331813, 0.47396427213987075, 0.3603192702394527, 0.31889015583428354, 0.2789813759026986, 0.2675788673508172, 0.25921702774610417, 0.24819460281261876, 0.23679209426073736, 0.21892816419612315, 0.20866590649942987, 0.19536297985556822, 0.17673888255416192, 0.16989737742303307, 0.16153553781832003, 0.15469403268719117, 0.15089319650323071, 0.14861269479285444, 0.15089319650323071, 0.14785252755606235, 0.12808817939946787, 0.1250475104522995, 0.12466742683390346, 0.12884834663625996, 0.11174458380843785, 0.10604332953249715, 0.09958190801976435, 0.09616115545419993, 0.09616115545419993, 0.09578107183580388, 0.09616115545419993, 0.09578107183580388, 0.09540098821740783, 0.44241733181299886, 0.4370961611554542, 0.43101482326111745, 0.4256936526035728, 0.41581147852527556, 0.410870391486127, 0.3595591030026606, 0.3595591030026606, 0.3603192702394527, 0.10338274420372481, 0.09920182440136831, 0.09806157354618016, 0.09958190801976435, 0.09920182440136831, 0.09768148992778411, 0.09616115545419993, 0.09654123907259597, 0.09578107183580388, 0.09578107183580388, 0.10034207525655645, 0.1056632459141011, 0.5013302926643861, 0.21740782972253897, 0.2637780311668567, 0.282022044849867, 0.5237552261497529, 0.443557582668187, 0.137210186240973, 0.08133789433675409, 0.07525655644241733, 0.07411630558722919, 0.07221588749524896, 0.072595971113645, 0.072595971113645, 0.07411630558722919, 0.07373622196883314, 0.07639680729760548, 0.07715697453439757, 0.09502090459901179, 0.08551881413911061, 0.07373622196883314, 0.07221588749524896, 0.06917521854808058, 0.4199923983276321, 0.3998479665526416, 0.3903458760927404, 0.798935765868491, 0.8939566704675028, 0.8540478905359179, 0.42949448878753327, 0.06385404789053592, 0.06347396427213987, 0.06233371341695173, 0.06157354618015964, 0.0596731280881794, 0.059293044469783354, 0.06081337894336754, 0.05131128848346636, 0.04218928164196123, 0.04142911440516914, 0.04180919802356518, 0.042569365260357275, 0.04028886354998099, 0.04028886354998099, 0.04903078677309008, 0.043329532497149374, 0.04484986697073356, 0.04446978335233751, 0.04446978335233751, 0.04218928164196123, 0.043329532497149374, 0.04522995058912961, 0.048270619536297986, 0.05473204104903079, 0.06727480045610035, 0.07411630558722919, 0.07525655644241733, 0.08133789433675409, 0.08969973394146712, 0.09540098821740783, 0.10110224249334854, 0.3295324971493729, 0.30520714557202583, 0.2968453059673128, 0.28582288103382747, 0.28354237932345117, 0.628658304827062, 0.6381603952869631, 0.6423413150893197, 0.6442417331812998, 0.6465222348916762, 0.6495629038388445, 0.6518434055492208, 0.6548840744963892, 0.6814899277841125, 0.7472443937666287, 0.9243633599391866, 0.8673508171797796, 0.6921322690992018, 0.6647662485746865, 0.6533637400228051, 0.6507031546940327, 0.6488027366020525, 0.645381984036488, 0.6431014823261118, 0.6404408969973394, 0.6347396427213987, 0.6237172177879133, 0.29228430254656024, 0.1999239832763208, 0.14557202584568604, 0.11896617255796275, 0.09388065374382364, 0.06955530216647662, 0.039148612694792854, 0.036488027366020526, 0.03610794374762448, 0.03458760927404029, 0.03344735841885215, 0.03344735841885215, 0.03344735841885215, 0.03344735841885215, 0.031546940326871914, 0.031166856708475865, 0.031166856708475865, 0.031166856708475865, 0.03078677309007982, 0.03040668947168377, 0.03040668947168377, 0.03078677309007982, 0.03078677309007982, 0.031166856708475865, 0.6297985556822501, 0.03686811098441657, 0.04370961611554542, 0.03420752565564424, 0.9148612694792855, 0.9239832763207906, 0.9452679589509693, 0.9479285442797415, 0.9308247814519194, 0.919422272900038, 0.9091600152033448, 0.03458760927404029, 0.03268719118206005, 0.03192702394526796, 0.0330672748004561, 0.031546940326871914, 0.031166856708475865, 0.03078677309007982, 0.031546940326871914, 0.032307107563664006, 0.0330672748004561, 0.03268719118206005, 0.03268719118206005, 0.0330672748004561, 0.03458760927404029, 0.035727860129228434, 0.036488027366020526, 0.036488027366020526, 0.0395286963131889, 0.04446978335233751, 0.05017103762827822, 0.12770809578107184, 0.10452299505891297, 0.08095781071835804, 0.07449638920562524, 0.0676548840744964, 0.0653743823641201, 0.06423413150893197, 0.06157354618015964, 0.7141771189661725, 0.7601672367920943, 0.8920562523755227, 0.9068795134929685, 0.9414671227670087, 0.9475484606613455, 0.9490687951349297, 0.9486887115165337, 0.9452679589509693, 0.927023945267959, 0.9026985936906119, 0.8403648802736602, 0.733561383504371, 0.693652603572786, 0.06043329532497149, 0.058532877232991255, 0.05891296085138731, 0.059293044469783354, 0.060053211706575446, 0.06043329532497149, 0.06195362979855568, 0.06347396427213987, 0.06461421512732801, 0.06651463321930824, 0.0668947168377043, 0.07107563664006081, 0.0733561383504371, 0.07601672367920942, 0.09007981755986318, 0.37058152793614596, 0.20334473584188523, 0.20030406689471683, 0.20334473584188523, 0.20676548840744963, 0.14937286202964653, 0.15469403268719117, 0.15583428354237933, 0.1588749524895477, 0.16077537058152794, 0.15963511972633979, 0.16267578867350818, 0.16419612314709237, 0.1676168757126568, 0.16571645762067655, 0.1660965412390726, 0.16837704294944889, 0.16799695933105283, 0.169517293804637, 0.17103762827822122, 0.17445838084378562, 0.17559863169897377, 0.1790193842645382, 0.1862409730140631, 0.1919422272900038, 0.1961231470923603, 0.1999239832763208, 0.20448498669707335, 0.20980615735461802, 0.2227290003800836, 0.24287343215507412, 0.2668187001140251, 0.2972253895857089, 0.35309768148992776, 0.44469783352337516, 0.49144811858608894], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/HrpB_C.gap.json b/pfam_gap_rates/HrpB_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ac7e004f44ff58e5755fcddd9ff12d3eb8e8f5da
--- /dev/null
+++ b/pfam_gap_rates/HrpB_C.gap.json
@@ -0,0 +1 @@
+{"family": "HrpB_C", "n_seqs": 545, "length": 137, "gap_rates": [0.1853211009174312, 0.1577981651376147, 0.14862385321100918, 0.12844036697247707, 0.11192660550458716, 0.10091743119266056, 0.08807339449541285, 0.08990825688073395, 0.08623853211009175, 0.07706422018348624, 0.07522935779816514, 0.06972477064220184, 0.07339449541284404, 0.05688073394495413, 0.05504587155963303, 0.04220183486238532, 0.03853211009174312, 0.03853211009174312, 0.03302752293577982, 0.031192660550458717, 0.025688073394495414, 0.022018348623853212, 0.02018348623853211, 0.012844036697247707, 0.011009174311926606, 0.011009174311926606, 0.011009174311926606, 0.009174311926605505, 0.014678899082568808, 0.01651376146788991, 0.01834862385321101, 0.01651376146788991, 0.014678899082568808, 0.009174311926605505, 0.009174311926605505, 0.009174311926605505, 0.009174311926605505, 0.011009174311926606, 0.009174311926605505, 0.007339449541284404, 0.007339449541284404, 0.007339449541284404, 0.007339449541284404, 0.007339449541284404, 0.007339449541284404, 0.009174311926605505, 0.009174311926605505, 0.01651376146788991, 0.011009174311926606, 0.011009174311926606, 0.023853211009174313, 0.012844036697247707, 0.011009174311926606, 0.011009174311926606, 0.011009174311926606, 0.011009174311926606, 0.05137614678899083, 0.047706422018348627, 0.06422018348623854, 0.07706422018348624, 0.20917431192660552, 0.9119266055045872, 0.9467889908256881, 0.9155963302752294, 0.8513761467889909, 0.007339449541284404, 0.007339449541284404, 0.007339449541284404, 0.009174311926605505, 0.009174311926605505, 0.009174311926605505, 0.007339449541284404, 0.007339449541284404, 0.007339449541284404, 0.007339449541284404, 0.005504587155963303, 0.005504587155963303, 0.005504587155963303, 0.005504587155963303, 0.005504587155963303, 0.009174311926605505, 0.005504587155963303, 0.005504587155963303, 0.003669724770642202, 0.005504587155963303, 0.012844036697247707, 0.1834862385321101, 0.1706422018348624, 0.003669724770642202, 0.003669724770642202, 0.001834862385321101, 0.001834862385321101, 0.001834862385321101, 0.001834862385321101, 0.001834862385321101, 0.001834862385321101, 0.001834862385321101, 0.001834862385321101, 0.001834862385321101, 0.001834862385321101, 0.001834862385321101, 0.001834862385321101, 0.001834862385321101, 0.001834862385321101, 0.001834862385321101, 0.001834862385321101, 0.001834862385321101, 0.001834862385321101, 0.001834862385321101, 0.001834862385321101, 0.001834862385321101, 0.001834862385321101, 0.001834862385321101, 0.001834862385321101, 0.001834862385321101, 0.001834862385321101, 0.001834862385321101, 0.001834862385321101, 0.001834862385321101, 0.001834862385321101, 0.001834862385321101, 0.001834862385321101, 0.001834862385321101, 0.001834862385321101, 0.001834862385321101, 0.003669724770642202, 0.003669724770642202, 0.003669724770642202, 0.005504587155963303, 0.005504587155963303, 0.009174311926605505, 0.009174311926605505, 0.009174311926605505, 0.03853211009174312, 0.03853211009174312, 0.045871559633027525, 0.05137614678899083], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/HutP.gap.json b/pfam_gap_rates/HutP.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..7fc602f341ff93c34ce047b1ffcd5a800227a780
--- /dev/null
+++ b/pfam_gap_rates/HutP.gap.json
@@ -0,0 +1 @@
+{"family": "HutP", "n_seqs": 137, "length": 148, "gap_rates": [0.1386861313868613, 0.072992700729927, 0.058394160583941604, 0.029197080291970802, 0.029197080291970802, 0.021897810218978103, 0.021897810218978103, 0.014598540145985401, 0.014598540145985401, 0.014598540145985401, 0.014598540145985401, 0.35036496350364965, 0.0364963503649635, 0.021897810218978103, 0.029197080291970802, 0.029197080291970802, 0.058394160583941604, 0.0364963503649635, 0.021897810218978103, 0.014598540145985401, 0.021897810218978103, 0.051094890510948905, 0.014598540145985401, 0.0072992700729927005, 0.014598540145985401, 0.058394160583941604, 0.058394160583941604, 0.927007299270073, 0.014598540145985401, 0.0072992700729927005, 0.0072992700729927005, 0.0072992700729927005, 0.0072992700729927005, 0.0072992700729927005, 0.0072992700729927005, 0.0072992700729927005, 0.0072992700729927005, 0.0072992700729927005, 0.0072992700729927005, 0.0072992700729927005, 0.0072992700729927005, 0.25547445255474455, 0.25547445255474455, 0.25547445255474455, 0.948905109489051, 0.948905109489051, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.7664233576642335, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.948905109489051, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.7445255474452555, 0.7445255474452555, 0.7445255474452555, 0.7445255474452555, 0.6642335766423357, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.7445255474452555, 0.7445255474452555, 0.7445255474452555, 0.7445255474452555, 0.9416058394160584, 0.7445255474452555, 0.7445255474452555, 0.7445255474452555, 0.7445255474452555, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.7007299270072993, 0.5766423357664233, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.014598540145985401, 0.014598540145985401, 0.0364963503649635, 0.058394160583941604], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/HycI.gap.json b/pfam_gap_rates/HycI.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..25af4d261807fe72ccb874493612235cbf2f753b
--- /dev/null
+++ b/pfam_gap_rates/HycI.gap.json
@@ -0,0 +1 @@
+{"family": "HycI", "n_seqs": 688, "length": 136, "gap_rates": [0.6002906976744186, 0.44476744186046513, 0.35174418604651164, 0.3125, 0.29941860465116277, 0.28343023255813954, 0.2688953488372093, 0.26598837209302323, 0.2543604651162791, 0.375, 0.26744186046511625, 0.22529069767441862, 0.2136627906976744, 0.2005813953488372, 0.2180232558139535, 0.9316860465116279, 0.9171511627906976, 0.27761627906976744, 0.14098837209302326, 0.13662790697674418, 0.13226744186046513, 0.1308139534883721, 0.12790697674418605, 0.12645348837209303, 0.12936046511627908, 0.1119186046511628, 0.09738372093023256, 0.06831395348837209, 0.06540697674418605, 0.04941860465116279, 0.03924418604651163, 0.036337209302325583, 0.030523255813953487, 0.030523255813953487, 0.02180232558139535, 0.020348837209302327, 0.01744186046511628, 0.8241279069767442, 0.7616279069767442, 0.014534883720930232, 0.01308139534883721, 0.01308139534883721, 0.014534883720930232, 0.011627906976744186, 0.011627906976744186, 0.007267441860465116, 0.007267441860465116, 0.00872093023255814, 0.007267441860465116, 0.007267441860465116, 0.010174418604651164, 0.8343023255813954, 0.023255813953488372, 0.01308139534883721, 0.011627906976744186, 0.01308139534883721, 0.015988372093023256, 0.010174418604651164, 0.010174418604651164, 0.007267441860465116, 0.007267441860465116, 0.010174418604651164, 0.01308139534883721, 0.011627906976744186, 0.010174418604651164, 0.01744186046511628, 0.011627906976744186, 0.011627906976744186, 0.055232558139534885, 0.3808139534883721, 0.1569767441860465, 0.10174418604651163, 0.06686046511627906, 0.06395348837209303, 0.4418604651162791, 0.08575581395348837, 0.02180232558139535, 0.015988372093023256, 0.011627906976744186, 0.011627906976744186, 0.011627906976744186, 0.011627906976744186, 0.01308139534883721, 0.01308139534883721, 0.015988372093023256, 0.01308139534883721, 0.01308139534883721, 0.01308139534883721, 0.011627906976744186, 0.01308139534883721, 0.014534883720930232, 0.014534883720930232, 0.015988372093023256, 0.07848837209302326, 0.13517441860465115, 0.1686046511627907, 0.125, 0.059593023255813955, 0.03488372093023256, 0.0625, 0.015988372093023256, 0.014534883720930232, 0.014534883720930232, 0.014534883720930232, 0.01744186046511628, 0.020348837209302327, 0.02180232558139535, 0.027616279069767442, 0.027616279069767442, 0.02616279069767442, 0.027616279069767442, 0.03343023255813953, 0.940406976744186, 0.6017441860465116, 0.04505813953488372, 0.0377906976744186, 0.03924418604651163, 0.03924418604651163, 0.03924418604651163, 0.03924418604651163, 0.03924418604651163, 0.03924418604651163, 0.040697674418604654, 0.040697674418604654, 0.0436046511627907, 0.046511627906976744, 0.04941860465116279, 0.055232558139534885, 0.061046511627906974, 0.07994186046511628, 0.09738372093023256, 0.125, 0.18023255813953487, 0.375, 0.5683139534883721, 0.9258720930232558], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Hydant_A_N.gap.json b/pfam_gap_rates/Hydant_A_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a0f7048e1ed9c19f2f53fed69f4fc2b0a84b88e5
--- /dev/null
+++ b/pfam_gap_rates/Hydant_A_N.gap.json
@@ -0,0 +1 @@
+{"family": "Hydant_A_N", "n_seqs": 1828, "length": 237, "gap_rates": [0.5087527352297593, 0.087527352297593, 0.07221006564551423, 0.06947483588621445, 0.06291028446389496, 0.060175054704595186, 0.05962800875273523, 0.05908096280087528, 0.05908096280087528, 0.05962800875273523, 0.05908096280087528, 0.058533916849015315, 0.05798687089715536, 0.057439824945295405, 0.057439824945295405, 0.057439824945295405, 0.05689277899343545, 0.09026258205689278, 0.09518599562363239, 0.5382932166301969, 0.8692560175054704, 0.9075492341356673, 0.9420131291028446, 0.9217724288840262, 0.8960612691466083, 0.787746170678337, 0.09135667396061269, 0.06400437636761488, 0.05142231947483589, 0.04814004376367615, 0.047045951859956234, 0.04540481400437637, 0.04540481400437637, 0.044857768052516414, 0.04431072210065645, 0.04431072210065645, 0.04540481400437637, 0.6477024070021882, 0.6788840262582057, 0.6947483588621444, 0.6482494529540481, 0.6444201312910285, 0.19912472647702406, 0.048687089715536105, 0.04814004376367615, 0.04814004376367615, 0.047592997811816196, 0.04649890590809628, 0.04649890590809628, 0.04649890590809628, 0.04649890590809628, 0.04649890590809628, 0.04649890590809628, 0.04649890590809628, 0.047045951859956234, 0.047592997811816196, 0.04814004376367615, 0.09409190371991247, 0.11816192560175055, 0.14113785557986872, 0.20842450765864332, 0.1739606126914661, 0.1652078774617068, 0.2839168490153173, 0.6914660831509847, 0.7171772428884027, 0.7910284463894968, 0.7040481400437637, 0.6832603938730853, 0.0836980306345733, 0.06673960612691467, 0.05470459518599562, 0.048687089715536105, 0.04923413566739606, 0.04540481400437637, 0.04157549234135667, 0.04048140043763676, 0.032275711159737416, 0.032275711159737416, 0.032275711159737416, 0.032275711159737416, 0.03336980306345733, 0.03282275711159737, 0.03282275711159737, 0.03282275711159737, 0.03172866520787746, 0.03172866520787746, 0.032275711159737416, 0.032275711159737416, 0.032275711159737416, 0.03282275711159737, 0.03391684901531729, 0.8922319474835886, 0.8966083150984683, 0.8599562363238512, 0.0350109409190372, 0.03665207877461707, 0.037199124726477024, 0.038840262582056896, 0.03774617067833698, 0.037199124726477024, 0.037199124726477024, 0.038840262582056896, 0.04923413566739606, 0.047045951859956234, 0.04649890590809628, 0.05196936542669584, 0.058533916849015315, 0.060175054704595186, 0.06072210065645514, 0.07658643326039387, 0.07439824945295405, 0.07549234135667396, 0.08916849015317287, 0.09573304157549234, 0.14442013129102846, 0.14113785557986872, 0.13457330415754923, 0.12582056892778992, 0.12144420131291028, 0.9447483588621444, 0.9310722100656456, 0.25328227571115974, 0.2609409190371991, 0.31181619256017507, 0.30196936542669583, 0.2899343544857768, 0.2833698030634573, 0.6980306345733042, 0.8949671772428884, 0.9480306345733042, 0.887308533916849, 0.6723194748358862, 0.2324945295404814, 0.16301969365426697, 0.14168490153172866, 0.1263676148796499, 0.10886214442013128, 0.087527352297593, 0.0787746170678337, 0.07166301969365427, 0.06838074398249452, 0.06291028446389496, 0.05470459518599562, 0.041028446389496716, 0.039934354485776806, 0.04048140043763676, 0.041028446389496716, 0.04157549234135667, 0.04157549234135667, 0.04266958424507659, 0.06564551422319474, 0.7959518599562363, 0.7964989059080962, 0.7964989059080962, 0.7981400437636762, 0.7986870897155361, 0.7986870897155361, 0.8025164113785558, 0.8030634573304157, 0.8145514223194749, 0.8233041575492341, 0.8484682713347921, 0.8659737417943107, 0.8780087527352297, 0.9080962800875274, 0.9403719912472648, 0.9474835886214442, 0.9485776805251641, 0.9425601750547046, 0.9354485776805251, 0.887308533916849, 0.8719912472647703, 0.8637855579868708, 0.8402625820568927, 0.8200218818380745, 0.8030634573304157, 0.8025164113785558, 0.8014223194748359, 0.7986870897155361, 0.7981400437636762, 0.7975929978118161, 0.7964989059080962, 0.7964989059080962, 0.7943107221006565, 0.07549234135667396, 0.0661925601750547, 0.06236323851203501, 0.05470459518599562, 0.044857768052516414, 0.0437636761487965, 0.04266958424507659, 0.0437636761487965, 0.041028446389496716, 0.04048140043763676, 0.04157549234135667, 0.04212253829321663, 0.04266958424507659, 0.04321663019693654, 0.04431072210065645, 0.04431072210065645, 0.0437636761487965, 0.044857768052516414, 0.04649890590809628, 0.04649890590809628, 0.05087527352297593, 0.05689277899343545, 0.13457330415754923, 0.05087527352297593, 0.047045951859956234, 0.0437636761487965, 0.0437636761487965, 0.04431072210065645, 0.04540481400437637, 0.04540481400437637, 0.04540481400437637, 0.04649890590809628, 0.04649890590809628, 0.04649890590809628, 0.047592997811816196, 0.04814004376367615, 0.049781181619256015, 0.05087527352297593, 0.0525164113785558, 0.053610503282275714, 0.053610503282275714, 0.05415754923413567, 0.05415754923413567, 0.05470459518599562, 0.057439824945295405, 0.05962800875273523, 0.06673960612691467, 0.07822757111597374, 0.10831509846827134, 0.16794310722100655, 0.32603938730853393, 0.8090809628008753], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Hydantoinase_B.gap.json b/pfam_gap_rates/Hydantoinase_B.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..789ae927946b95d29fd4b477bdc03ae10b6e2512
--- /dev/null
+++ b/pfam_gap_rates/Hydantoinase_B.gap.json
@@ -0,0 +1 @@
+{"family": "Hydantoinase_B", "n_seqs": 1375, "length": 600, "gap_rates": [0.23854545454545453, 0.18109090909090908, 0.13818181818181818, 0.11927272727272727, 0.10836363636363637, 0.10545454545454545, 0.09381818181818181, 0.09309090909090909, 0.09236363636363637, 0.09090909090909091, 0.09090909090909091, 0.09090909090909091, 0.08727272727272728, 0.08727272727272728, 0.08727272727272728, 0.08654545454545455, 0.08654545454545455, 0.08654545454545455, 0.08145454545454546, 0.08145454545454546, 0.08145454545454546, 0.08145454545454546, 0.08072727272727273, 0.08072727272727273, 0.07927272727272727, 0.07854545454545454, 0.07854545454545454, 0.07927272727272727, 0.07927272727272727, 0.07854545454545454, 0.07781818181818181, 0.07927272727272727, 0.07927272727272727, 0.08727272727272728, 0.07927272727272727, 0.09963636363636363, 0.07781818181818181, 0.07781818181818181, 0.07709090909090908, 0.07709090909090908, 0.07636363636363637, 0.07563636363636364, 0.07563636363636364, 0.07563636363636364, 0.07563636363636364, 0.07563636363636364, 0.07636363636363637, 0.07781818181818181, 0.07781818181818181, 0.07709090909090908, 0.07709090909090908, 0.096, 0.10109090909090909, 0.12727272727272726, 0.13236363636363635, 0.8829090909090909, 0.13163636363636363, 0.12727272727272726, 0.12436363636363636, 0.12581818181818183, 0.12363636363636364, 0.10254545454545455, 0.0989090909090909, 0.08072727272727273, 0.07854545454545454, 0.07927272727272727, 0.07927272727272727, 0.07927272727272727, 0.08509090909090909, 0.08945454545454545, 0.09090909090909091, 0.09163636363636364, 0.10327272727272727, 0.11127272727272727, 0.11272727272727273, 0.9192727272727272, 0.7447272727272727, 0.21454545454545454, 0.1330909090909091, 0.9156363636363636, 0.08654545454545455, 0.08, 0.07563636363636364, 0.07490909090909091, 0.07490909090909091, 0.07490909090909091, 0.07490909090909091, 0.07563636363636364, 0.07490909090909091, 0.07490909090909091, 0.07490909090909091, 0.07418181818181818, 0.07490909090909091, 0.07418181818181818, 0.9229090909090909, 0.8829090909090909, 0.07490909090909091, 0.07418181818181818, 0.07418181818181818, 0.07418181818181818, 0.9127272727272727, 0.07272727272727272, 0.07272727272727272, 0.07272727272727272, 0.07418181818181818, 0.07345454545454545, 0.07345454545454545, 0.07272727272727272, 0.072, 0.07272727272727272, 0.07272727272727272, 0.07127272727272728, 0.07272727272727272, 0.07781818181818181, 0.08072727272727273, 0.08072727272727273, 0.07636363636363637, 0.6567272727272727, 0.9367272727272727, 0.8974545454545455, 0.5963636363636363, 0.07490909090909091, 0.07345454545454545, 0.07272727272727272, 0.07272727272727272, 0.07272727272727272, 0.07272727272727272, 0.07418181818181818, 0.07418181818181818, 0.07418181818181818, 0.07563636363636364, 0.07563636363636364, 0.07490909090909091, 0.07490909090909091, 0.07563636363636364, 0.08, 0.07927272727272727, 0.08363636363636363, 0.08363636363636363, 0.13818181818181818, 0.14327272727272727, 0.15054545454545454, 0.09090909090909091, 0.08363636363636363, 0.09309090909090909, 0.12581818181818183, 0.07490909090909091, 0.072, 0.07272727272727272, 0.07272727272727272, 0.07272727272727272, 0.07272727272727272, 0.072, 0.07127272727272728, 0.07127272727272728, 0.07127272727272728, 0.07127272727272728, 0.07127272727272728, 0.07127272727272728, 0.07127272727272728, 0.07127272727272728, 0.07127272727272728, 0.07127272727272728, 0.072, 0.07418181818181818, 0.07418181818181818, 0.07490909090909091, 0.5665454545454546, 0.07709090909090908, 0.07563636363636364, 0.07490909090909091, 0.07418181818181818, 0.07345454545454545, 0.07781818181818181, 0.07563636363636364, 0.07709090909090908, 0.07563636363636364, 0.07563636363636364, 0.09454545454545454, 0.08436363636363636, 0.07709090909090908, 0.5658181818181818, 0.7207272727272728, 0.7352727272727273, 0.738909090909091, 0.7992727272727272, 0.7374545454545455, 0.7338181818181818, 0.5672727272727273, 0.5578181818181818, 0.07563636363636364, 0.07490909090909091, 0.07781818181818181, 0.07418181818181818, 0.07563636363636364, 0.07709090909090908, 0.07636363636363637, 0.07563636363636364, 0.07563636363636364, 0.07563636363636364, 0.07563636363636364, 0.07563636363636364, 0.07636363636363637, 0.07563636363636364, 0.07636363636363637, 0.07709090909090908, 0.07709090909090908, 0.07781818181818181, 0.07781818181818181, 0.07927272727272727, 0.08, 0.08, 0.08, 0.07854545454545454, 0.07854545454545454, 0.07927272727272727, 0.07854545454545454, 0.07854545454545454, 0.07781818181818181, 0.07781818181818181, 0.07854545454545454, 0.07854545454545454, 0.08727272727272728, 0.08145454545454546, 0.07927272727272727, 0.07709090909090908, 0.07781818181818181, 0.07781818181818181, 0.07854545454545454, 0.07636363636363637, 0.07636363636363637, 0.07709090909090908, 0.07709090909090908, 0.07781818181818181, 0.07636363636363637, 0.07563636363636364, 0.07636363636363637, 0.07636363636363637, 0.07636363636363637, 0.07636363636363637, 0.07563636363636364, 0.07563636363636364, 0.07563636363636364, 0.07563636363636364, 0.07490909090909091, 0.9250909090909091, 0.07490909090909091, 0.07709090909090908, 0.07709090909090908, 0.07781818181818181, 0.07636363636363637, 0.7069090909090909, 0.7556363636363637, 0.9090909090909091, 0.9323636363636364, 0.9149090909090909, 0.8989090909090909, 0.72, 0.6741818181818182, 0.07927272727272727, 0.17236363636363636, 0.16363636363636364, 0.07854545454545454, 0.08436363636363636, 0.08581818181818182, 0.11927272727272727, 0.11345454545454546, 0.07272727272727272, 0.072, 0.08145454545454546, 0.6632727272727272, 0.072, 0.5607272727272727, 0.6145454545454545, 0.8312727272727273, 0.9352727272727273, 0.6305454545454545, 0.6043636363636363, 0.5578181818181818, 0.07272727272727272, 0.07345454545454545, 0.07345454545454545, 0.07345454545454545, 0.07345454545454545, 0.07418181818181818, 0.07418181818181818, 0.07418181818181818, 0.07927272727272727, 0.07927272727272727, 0.07490909090909091, 0.07563636363636364, 0.08436363636363636, 0.5636363636363636, 0.517090909090909, 0.07345454545454545, 0.07272727272727272, 0.072, 0.07127272727272728, 0.07127272727272728, 0.07127272727272728, 0.08509090909090909, 0.072, 0.072, 0.07272727272727272, 0.07272727272727272, 0.07418181818181818, 0.07781818181818181, 0.07345454545454545, 0.07490909090909091, 0.07490909090909091, 0.07490909090909091, 0.07490909090909091, 0.07563636363636364, 0.07563636363636364, 0.07636363636363637, 0.07490909090909091, 0.07418181818181818, 0.9381818181818182, 0.07490909090909091, 0.07272727272727272, 0.07563636363636364, 0.07490909090909091, 0.07490909090909091, 0.07418181818181818, 0.07490909090909091, 0.07490909090909091, 0.07563636363636364, 0.07636363636363637, 0.9214545454545454, 0.07563636363636364, 0.07709090909090908, 0.136, 0.07781818181818181, 0.07781818181818181, 0.07927272727272727, 0.07418181818181818, 0.07418181818181818, 0.07418181818181818, 0.07418181818181818, 0.07345454545454545, 0.07490909090909091, 0.07563636363636364, 0.07636363636363637, 0.07563636363636364, 0.07563636363636364, 0.07345454545454545, 0.07418181818181818, 0.07709090909090908, 0.07709090909090908, 0.07709090909090908, 0.07709090909090908, 0.08581818181818182, 0.07781818181818181, 0.07781818181818181, 0.07854545454545454, 0.07709090909090908, 0.07781818181818181, 0.07781818181818181, 0.07709090909090908, 0.07781818181818181, 0.07854545454545454, 0.07709090909090908, 0.07709090909090908, 0.2727272727272727, 0.09236363636363637, 0.1330909090909091, 0.10036363636363636, 0.0829090909090909, 0.08727272727272728, 0.07854545454545454, 0.07854545454545454, 0.08145454545454546, 0.07709090909090908, 0.07709090909090908, 0.07709090909090908, 0.07636363636363637, 0.07563636363636364, 0.07563636363636364, 0.07563636363636364, 0.07563636363636364, 0.07636363636363637, 0.07636363636363637, 0.07636363636363637, 0.5352727272727272, 0.9476363636363636, 0.9469090909090909, 0.5367272727272727, 0.5367272727272727, 0.5454545454545454, 0.5403636363636364, 0.5345454545454545, 0.07709090909090908, 0.07563636363636364, 0.07490909090909091, 0.09454545454545454, 0.07636363636363637, 0.08436363636363636, 0.09454545454545454, 0.07854545454545454, 0.07636363636363637, 0.07636363636363637, 0.07563636363636364, 0.07563636363636364, 0.08363636363636363, 0.07636363636363637, 0.07709090909090908, 0.4036363636363636, 0.37527272727272726, 0.38836363636363636, 0.13454545454545455, 0.5105454545454545, 0.42254545454545456, 0.7403636363636363, 0.832, 0.928, 0.9003636363636364, 0.7825454545454545, 0.6894545454545454, 0.15636363636363637, 0.128, 0.12145454545454545, 0.22472727272727272, 0.07781818181818181, 0.07418181818181818, 0.07418181818181818, 0.07563636363636364, 0.07345454545454545, 0.07345454545454545, 0.07345454545454545, 0.07345454545454545, 0.07345454545454545, 0.07418181818181818, 0.07490909090909091, 0.07563636363636364, 0.07563636363636364, 0.07781818181818181, 0.07854545454545454, 0.07854545454545454, 0.07854545454545454, 0.07854545454545454, 0.07709090909090908, 0.07709090909090908, 0.07781818181818181, 0.8603636363636363, 0.19054545454545455, 0.08218181818181818, 0.08072727272727273, 0.09672727272727273, 0.07636363636363637, 0.07563636363636364, 0.07490909090909091, 0.07490909090909091, 0.07490909090909091, 0.07490909090909091, 0.07563636363636364, 0.07563636363636364, 0.07563636363636364, 0.07563636363636364, 0.07563636363636364, 0.07563636363636364, 0.07563636363636364, 0.07563636363636364, 0.07709090909090908, 0.07636363636363637, 0.07636363636363637, 0.07709090909090908, 0.07709090909090908, 0.07709090909090908, 0.07709090909090908, 0.07709090909090908, 0.07781818181818181, 0.07781818181818181, 0.07709090909090908, 0.07709090909090908, 0.07709090909090908, 0.07781818181818181, 0.07781818181818181, 0.07927272727272727, 0.07854545454545454, 0.07854545454545454, 0.07854545454545454, 0.07854545454545454, 0.07781818181818181, 0.07781818181818181, 0.07781818181818181, 0.07781818181818181, 0.07781818181818181, 0.07781818181818181, 0.07781818181818181, 0.07854545454545454, 0.07781818181818181, 0.07854545454545454, 0.07854545454545454, 0.07854545454545454, 0.07927272727272727, 0.07927272727272727, 0.07927272727272727, 0.08, 0.9090909090909091, 0.7083636363636364, 0.08, 0.08, 0.08, 0.08, 0.08145454545454546, 0.07927272727272727, 0.07927272727272727, 0.07927272727272727, 0.07854545454545454, 0.07854545454545454, 0.08, 0.08, 0.08072727272727273, 0.08145454545454546, 0.08145454545454546, 0.08, 0.08145454545454546, 0.08072727272727273, 0.08145454545454546, 0.08145454545454546, 0.0829090909090909, 0.08218181818181818, 0.08218181818181818, 0.08218181818181818, 0.08218181818181818, 0.08218181818181818, 0.0829090909090909, 0.5978181818181818, 0.6, 0.6356363636363637, 0.8865454545454545, 0.9301818181818182, 0.9469090909090909, 0.9374545454545454, 0.8952727272727272, 0.858909090909091, 0.23781818181818182, 0.3541818181818182, 0.3490909090909091, 0.304, 0.20945454545454545, 0.384, 0.7563636363636363, 0.7781818181818182, 0.8501818181818181, 0.8610909090909091, 0.8792727272727273, 0.8872727272727273, 0.901090909090909, 0.912, 0.9250909090909091, 0.9410909090909091, 0.9469090909090909, 0.9483636363636364, 0.9432727272727273, 0.9345454545454546, 0.9178181818181819, 0.9083636363636364, 0.8923636363636364, 0.8829090909090909, 0.872, 0.856, 0.8167272727272727, 0.7701818181818182, 0.7061818181818181, 0.3185454545454545, 0.14327272727272727, 0.13818181818181818, 0.12290909090909091, 0.11418181818181818, 0.11781818181818182, 0.1410909090909091, 0.12727272727272726, 0.12581818181818183, 0.11345454545454546, 0.11345454545454546, 0.11418181818181818, 0.8087272727272727, 0.11563636363636363, 0.11563636363636363, 0.09018181818181818, 0.09018181818181818, 0.09018181818181818, 0.09018181818181818, 0.09090909090909091, 0.09090909090909091, 0.09236363636363637, 0.09236363636363637, 0.09309090909090909, 0.09381818181818181, 0.09454545454545454, 0.09527272727272727, 0.09527272727272727, 0.09672727272727273, 0.09745454545454546, 0.09818181818181818, 0.10181818181818182, 0.11636363636363636, 0.17163636363636364, 0.5163636363636364], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/HypD.gap.json b/pfam_gap_rates/HypD.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c8f4870efacfaa6a752c06f5be3aba414cc87abf
--- /dev/null
+++ b/pfam_gap_rates/HypD.gap.json
@@ -0,0 +1 @@
+{"family": "HypD", "n_seqs": 610, "length": 372, "gap_rates": [0.7065573770491803, 0.40491803278688526, 0.30327868852459017, 0.2360655737704918, 0.1819672131147541, 0.16065573770491803, 0.14098360655737704, 0.12786885245901639, 0.10983606557377049, 0.10655737704918032, 0.10327868852459017, 0.10327868852459017, 0.11639344262295082, 0.4786885245901639, 0.4786885245901639, 0.9065573770491804, 0.9344262295081968, 0.9377049180327869, 0.9327868852459016, 0.7540983606557377, 0.05573770491803279, 0.05081967213114754, 0.05081967213114754, 0.05081967213114754, 0.05081967213114754, 0.05081967213114754, 0.04590163934426229, 0.04590163934426229, 0.04590163934426229, 0.04590163934426229, 0.04590163934426229, 0.04426229508196721, 0.04426229508196721, 0.04426229508196721, 0.04426229508196721, 0.04426229508196721, 0.04426229508196721, 0.04426229508196721, 0.04426229508196721, 0.04426229508196721, 0.04426229508196721, 0.04426229508196721, 0.04426229508196721, 0.04426229508196721, 0.04262295081967213, 0.04262295081967213, 0.04262295081967213, 0.04262295081967213, 0.04426229508196721, 0.04426229508196721, 0.04262295081967213, 0.04262295081967213, 0.04262295081967213, 0.04262295081967213, 0.04262295081967213, 0.04262295081967213, 0.04426229508196721, 0.04426229508196721, 0.04590163934426229, 0.04590163934426229, 0.04426229508196721, 0.04426229508196721, 0.040983606557377046, 0.040983606557377046, 0.040983606557377046, 0.040983606557377046, 0.03934426229508197, 0.03934426229508197, 0.03934426229508197, 0.03770491803278689, 0.03770491803278689, 0.03770491803278689, 0.03770491803278689, 0.03770491803278689, 0.03770491803278689, 0.03934426229508197, 0.03934426229508197, 0.14918032786885246, 0.040983606557377046, 0.03934426229508197, 0.03934426229508197, 0.040983606557377046, 0.04262295081967213, 0.04262295081967213, 0.04262295081967213, 0.04262295081967213, 0.04262295081967213, 0.04262295081967213, 0.040983606557377046, 0.040983606557377046, 0.040983606557377046, 0.03934426229508197, 0.03934426229508197, 0.03934426229508197, 0.9295081967213115, 0.940983606557377, 0.9475409836065574, 0.940983606557377, 0.7491803278688525, 0.040983606557377046, 0.040983606557377046, 0.04426229508196721, 0.04590163934426229, 0.04590163934426229, 0.04590163934426229, 0.04590163934426229, 0.05737704918032787, 0.05737704918032787, 0.05573770491803279, 0.047540983606557376, 0.04426229508196721, 0.04262295081967213, 0.03934426229508197, 0.03934426229508197, 0.03934426229508197, 0.03934426229508197, 0.03934426229508197, 0.03934426229508197, 0.03934426229508197, 0.03934426229508197, 0.03934426229508197, 0.03934426229508197, 0.03934426229508197, 0.040983606557377046, 0.040983606557377046, 0.040983606557377046, 0.040983606557377046, 0.040983606557377046, 0.040983606557377046, 0.11475409836065574, 0.06557377049180328, 0.054098360655737705, 0.040983606557377046, 0.03934426229508197, 0.03934426229508197, 0.03934426229508197, 0.040983606557377046, 0.040983606557377046, 0.040983606557377046, 0.040983606557377046, 0.040983606557377046, 0.040983606557377046, 0.040983606557377046, 0.04262295081967213, 0.040983606557377046, 0.040983606557377046, 0.040983606557377046, 0.040983606557377046, 0.040983606557377046, 0.040983606557377046, 0.040983606557377046, 0.040983606557377046, 0.040983606557377046, 0.040983606557377046, 0.1819672131147541, 0.1819672131147541, 0.14590163934426228, 0.06885245901639345, 0.06229508196721312, 0.06229508196721312, 0.05737704918032787, 0.03770491803278689, 0.03770491803278689, 0.03934426229508197, 0.03934426229508197, 0.03934426229508197, 0.03934426229508197, 0.03934426229508197, 0.03934426229508197, 0.040983606557377046, 0.04262295081967213, 0.040983606557377046, 0.040983606557377046, 0.03934426229508197, 0.03934426229508197, 0.03934426229508197, 0.03934426229508197, 0.03934426229508197, 0.03934426229508197, 0.03934426229508197, 0.040983606557377046, 0.040983606557377046, 0.06557377049180328, 0.11967213114754098, 0.8836065573770492, 0.9049180327868852, 0.9229508196721311, 0.9081967213114754, 0.8918032786885246, 0.8573770491803279, 0.07049180327868852, 0.06557377049180328, 0.054098360655737705, 0.03770491803278689, 0.03770491803278689, 0.03770491803278689, 0.03770491803278689, 0.03770491803278689, 0.03770491803278689, 0.03770491803278689, 0.03770491803278689, 0.03934426229508197, 0.03934426229508197, 0.03934426229508197, 0.03934426229508197, 0.03770491803278689, 0.03770491803278689, 0.03770491803278689, 0.03770491803278689, 0.03770491803278689, 0.03770491803278689, 0.04262295081967213, 0.054098360655737705, 0.06229508196721312, 0.08360655737704918, 0.07213114754098361, 0.05901639344262295, 0.09672131147540984, 0.03934426229508197, 0.03770491803278689, 0.036065573770491806, 0.03770491803278689, 0.03770491803278689, 0.036065573770491806, 0.036065573770491806, 0.03442622950819672, 0.03442622950819672, 0.03442622950819672, 0.03442622950819672, 0.03442622950819672, 0.03442622950819672, 0.03442622950819672, 0.03442622950819672, 0.03442622950819672, 0.03442622950819672, 0.03442622950819672, 0.03442622950819672, 0.03442622950819672, 0.036065573770491806, 0.03770491803278689, 0.03770491803278689, 0.03934426229508197, 0.04262295081967213, 0.040983606557377046, 0.040983606557377046, 0.04262295081967213, 0.03934426229508197, 0.03770491803278689, 0.036065573770491806, 0.036065573770491806, 0.036065573770491806, 0.03770491803278689, 0.03770491803278689, 0.03934426229508197, 0.03934426229508197, 0.040983606557377046, 0.03770491803278689, 0.03770491803278689, 0.03770491803278689, 0.03770491803278689, 0.03770491803278689, 0.03770491803278689, 0.03770491803278689, 0.03770491803278689, 0.03770491803278689, 0.03770491803278689, 0.03770491803278689, 0.03770491803278689, 0.03770491803278689, 0.03770491803278689, 0.03770491803278689, 0.03770491803278689, 0.03770491803278689, 0.03770491803278689, 0.03770491803278689, 0.03770491803278689, 0.03770491803278689, 0.036065573770491806, 0.036065573770491806, 0.6704918032786885, 0.03770491803278689, 0.03770491803278689, 0.03770491803278689, 0.03770491803278689, 0.03770491803278689, 0.03770491803278689, 0.03770491803278689, 0.03770491803278689, 0.03770491803278689, 0.03770491803278689, 0.03770491803278689, 0.03770491803278689, 0.03770491803278689, 0.03770491803278689, 0.036065573770491806, 0.036065573770491806, 0.036065573770491806, 0.036065573770491806, 0.04262295081967213, 0.04262295081967213, 0.036065573770491806, 0.036065573770491806, 0.036065573770491806, 0.036065573770491806, 0.036065573770491806, 0.03934426229508197, 0.03934426229508197, 0.03770491803278689, 0.040983606557377046, 0.04262295081967213, 0.7967213114754098, 0.8901639344262295, 0.9229508196721311, 0.8655737704918033, 0.7557377049180328, 0.04590163934426229, 0.06393442622950819, 0.04426229508196721, 0.03934426229508197, 0.03770491803278689, 0.03770491803278689, 0.03770491803278689, 0.03770491803278689, 0.03770491803278689, 0.03770491803278689, 0.03770491803278689, 0.03770491803278689, 0.03770491803278689, 0.03770491803278689, 0.03770491803278689, 0.03770491803278689, 0.03770491803278689, 0.03770491803278689, 0.03770491803278689, 0.03934426229508197, 0.03934426229508197, 0.03770491803278689, 0.03934426229508197, 0.040983606557377046, 0.040983606557377046, 0.040983606557377046, 0.040983606557377046, 0.040983606557377046, 0.040983606557377046, 0.040983606557377046, 0.040983606557377046, 0.04426229508196721, 0.04426229508196721, 0.04426229508196721, 0.04426229508196721, 0.04426229508196721, 0.04426229508196721, 0.04590163934426229, 0.04590163934426229, 0.04590163934426229, 0.04590163934426229, 0.04590163934426229, 0.04590163934426229, 0.04590163934426229, 0.04590163934426229, 0.047540983606557376, 0.047540983606557376, 0.047540983606557376, 0.047540983606557376, 0.04918032786885246, 0.04918032786885246, 0.04918032786885246, 0.04918032786885246, 0.05245901639344262, 0.06557377049180328, 0.1360655737704918, 0.4081967213114754], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/I-set.gap.json b/pfam_gap_rates/I-set.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..5dd1fa90cfc95d0182456bbc0be1aac1c179b22b
--- /dev/null
+++ b/pfam_gap_rates/I-set.gap.json
@@ -0,0 +1 @@
+{"family": "I-set", "n_seqs": 5000, "length": 103, "gap_rates": [0.6636, 0.5442, 0.4468, 0.4228, 0.3846, 0.3412, 0.2972, 0.229, 0.1896, 0.1514, 0.1212, 0.1044, 0.0902, 0.0764, 0.0642, 0.0548, 0.0438, 0.0394, 0.0352, 0.0318, 0.0292, 0.0268, 0.026, 0.0262, 0.0254, 0.0436, 0.0262, 0.0674, 0.0338, 0.0522, 0.0236, 0.0134, 0.0126, 0.0092, 0.0084, 0.0084, 0.0082, 0.8938, 0.0084, 0.0092, 0.01, 0.009, 0.0086, 0.022, 0.8686, 0.9202, 0.9376, 0.9498, 0.9304, 0.8956, 0.7976, 0.0916, 0.0724, 0.0434, 0.0322, 0.025, 0.0218, 0.0224, 0.0224, 0.0296, 0.0336, 0.8712, 0.9254, 0.9446, 0.9138, 0.7534, 0.2492, 0.2108, 0.1288, 0.0288, 0.0102, 0.0104, 0.0108, 0.0118, 0.0138, 0.012, 0.0126, 0.0118, 0.0122, 0.0124, 0.0114, 0.0108, 0.0108, 0.0116, 0.0122, 0.0138, 0.0172, 0.0282, 0.05, 0.0732, 0.0902, 0.1154, 0.117, 0.125, 0.1386, 0.155, 0.1674, 0.1884, 0.2068, 0.2312, 0.2582, 0.3278, 0.4052], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/IF-2B.gap.json b/pfam_gap_rates/IF-2B.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..57a1d359e1688f24cd14592de7a078d570847fe9
--- /dev/null
+++ b/pfam_gap_rates/IF-2B.gap.json
@@ -0,0 +1 @@
+{"family": "IF-2B", "n_seqs": 2395, "length": 410, "gap_rates": [0.7753653444676409, 0.39707724425887264, 0.3386221294363257, 0.30020876826722337, 0.2768267223382046, 0.2580375782881002, 0.2384133611691023, 0.2221294363256785, 0.2091858037578288, 0.20083507306889353, 0.19457202505219207, 0.1908141962421712, 0.18997912317327767, 0.1895615866388309, 0.18747390396659708, 0.18580375782881003, 0.18496868475991649, 0.18246346555323592, 0.18204592901878913, 0.17954070981210857, 0.17870563674321502, 0.17870563674321502, 0.17745302713987474, 0.17620041753653445, 0.934446764091858, 0.9106471816283925, 0.29227557411273486, 0.27432150313152404, 0.25970772442588724, 0.2534446764091858, 0.2430062630480167, 0.24091858037578287, 0.22964509394572025, 0.8342379958246346, 0.8484342379958246, 0.9411273486430063, 0.8405010438413362, 0.821294363256785, 0.18288100208768268, 0.1661795407098121, 0.1440501043841336, 0.1419624217118998, 0.13987473903966596, 0.13653444676409185, 0.1361169102296451, 0.13569937369519833, 0.13569937369519833, 0.1348643006263048, 0.13444676409185805, 0.13444676409185805, 0.1336116910229645, 0.13444676409185805, 0.13277661795407097, 0.1407098121085595, 0.13068893528183717, 0.12860125260960334, 0.12609603340292275, 0.12484342379958246, 0.12359081419624217, 0.12275574112734865, 0.12233820459290187, 0.12359081419624217, 0.12275574112734865, 0.12233820459290187, 0.12233820459290187, 0.12192066805845511, 0.12150313152400835, 0.12108559498956159, 0.8421711899791232, 0.925678496868476, 0.9022964509394572, 0.7653444676409186, 0.4221294363256785, 0.3586638830897704, 0.3177453027139875, 0.30062630480167013, 0.2430062630480167, 0.19707724425887266, 0.18413361169102296, 0.16242171189979124, 0.15615866388308977, 0.13862212943632568, 0.13277661795407097, 0.13194154488517745, 0.13110647181628393, 0.13068893528183717, 0.13068893528183717, 0.1315240083507307, 0.10396659707724426, 0.8643006263048016, 0.8688935281837161, 0.8697286012526096, 0.872651356993737, 0.8751565762004175, 0.8784968684759916, 0.8801670146137787, 0.8810020876826722, 0.8835073068893529, 0.8835073068893529, 0.8847599164926931, 0.890187891440501, 0.9014613778705637, 0.9056367432150313, 0.9106471816283925, 0.9164926931106472, 0.9210855949895616, 0.9223382045929018, 0.9244258872651357, 0.9290187891440501, 0.9323590814196242, 0.932776617954071, 0.9331941544885177, 0.936116910229645, 0.9402922755741128, 0.9407098121085595, 0.9419624217118998, 0.9427974947807933, 0.9444676409185804, 0.9457202505219207, 0.9457202505219207, 0.9473903966597077, 0.948643006263048, 0.9490605427974947, 0.9494780793319415, 0.9490605427974947, 0.948643006263048, 0.9465553235908142, 0.9457202505219207, 0.9457202505219207, 0.9427974947807933, 0.9423799582463466, 0.941544885177453, 0.9407098121085595, 0.938204592901879, 0.934446764091858, 0.932776617954071, 0.932776617954071, 0.9306889352818372, 0.9273486430062631, 0.924008350730689, 0.9215031315240083, 0.920250521920668, 0.9131524008350731, 0.9077244258872651, 0.9031315240083507, 0.8956158663883089, 0.8860125260960334, 0.8843423799582464, 0.8835073068893529, 0.8830897703549061, 0.8805845511482254, 0.8793319415448851, 0.8772442588726513, 0.8739039665970773, 0.8718162839248434, 0.8693110647181629, 0.8643006263048016, 0.8643006263048016, 0.1022964509394572, 0.10062630480167015, 0.09937369519832985, 0.09686847599164927, 0.09561586638830898, 0.09478079331941545, 0.09436325678496868, 0.09352818371607516, 0.09478079331941545, 0.09436325678496868, 0.09269311064718162, 0.85678496868476, 0.09269311064718162, 0.09144050104384134, 0.09144050104384134, 0.0906054279749478, 0.0906054279749478, 0.08977035490605428, 0.0906054279749478, 0.09018789144050104, 0.08935281837160751, 0.08977035490605428, 0.08977035490605428, 0.08977035490605428, 0.08977035490605428, 0.09018789144050104, 0.09018789144050104, 0.08893528183716075, 0.7741127348643007, 0.7962421711899791, 0.8421711899791232, 0.8985386221294364, 0.9348643006263048, 0.8793319415448851, 0.808768267223382, 0.778705636743215, 0.761169102296451, 0.0977035490605428, 0.0931106471816284, 0.08810020876826723, 0.08768267223382047, 0.08768267223382047, 0.08684759916492693, 0.08517745302713987, 0.08392484342379958, 0.08350730688935282, 0.0826722338204593, 0.08308977035490606, 0.08308977035490606, 0.08308977035490606, 0.0826722338204593, 0.5645093945720251, 0.569937369519833, 0.5720250521920668, 0.5732776617954071, 0.5720250521920668, 0.57160751565762, 0.5670146137787057, 0.5594989561586639, 0.08225469728601252, 0.08350730688935282, 0.0826722338204593, 0.08308977035490606, 0.08225469728601252, 0.08350730688935282, 0.08392484342379958, 0.9432150313152401, 0.08517745302713987, 0.08392484342379958, 0.08392484342379958, 0.19498956158663883, 0.09645093945720251, 0.09519832985386222, 0.09102296450939457, 0.08893528183716075, 0.08643006263048017, 0.08183716075156576, 0.08183716075156576, 0.08308977035490606, 0.08392484342379958, 0.08684759916492693, 0.08977035490605428, 0.08810020876826723, 0.0906054279749478, 0.08977035490605428, 0.0918580375782881, 0.09394572025052192, 0.09561586638830898, 0.5173277661795407, 0.10271398747390396, 0.09645093945720251, 0.09144050104384134, 0.09018789144050104, 0.08643006263048017, 0.08434237995824635, 0.08308977035490606, 0.08350730688935282, 0.08308977035490606, 0.0826722338204593, 0.08475991649269311, 0.08517745302713987, 0.08392484342379958, 0.08100208768267224, 0.08058455114822546, 0.0801670146137787, 0.0801670146137787, 0.07974947807933194, 0.07974947807933194, 0.08058455114822546, 0.07974947807933194, 0.07933194154488518, 0.07849686847599165, 0.07891440501043841, 0.07849686847599165, 0.07557411273486431, 0.07515657620041753, 0.07557411273486431, 0.9469728601252609, 0.5306889352818371, 0.5173277661795407, 0.07557411273486431, 0.07557411273486431, 0.07473903966597077, 0.07473903966597077, 0.07473903966597077, 0.07599164926931107, 0.07682672233820459, 0.07724425887265135, 0.07640918580375783, 0.07599164926931107, 0.07515657620041753, 0.07557411273486431, 0.07682672233820459, 0.07599164926931107, 0.07599164926931107, 0.10313152400835073, 0.07640918580375783, 0.07599164926931107, 0.07473903966597077, 0.07390396659707725, 0.07390396659707725, 0.07432150313152401, 0.07473903966597077, 0.07515657620041753, 0.07432150313152401, 0.07432150313152401, 0.07473903966597077, 0.07390396659707725, 0.07390396659707725, 0.07432150313152401, 0.07390396659707725, 0.07390396659707725, 0.07348643006263048, 0.07265135699373695, 0.07265135699373695, 0.07265135699373695, 0.07265135699373695, 0.0722338204592902, 0.07306889352818371, 0.07640918580375783, 0.07891440501043841, 0.07682672233820459, 0.07766179540709812, 0.07891440501043841, 0.08100208768267224, 0.08183716075156576, 0.07849686847599165, 0.0801670146137787, 0.08350730688935282, 0.13319415448851774, 0.10647181628392484, 0.1022964509394572, 0.09478079331941545, 0.09227557411273486, 0.11356993736951983, 0.10313152400835073, 0.10271398747390396, 0.17745302713987474, 0.16576200417536535, 0.16701461377870563, 0.15657620041753653, 0.15365344467640918, 0.11482254697286012, 0.11106471816283925, 0.11315240083507307, 0.11315240083507307, 0.11064718162839249, 0.11482254697286012, 0.11440501043841336, 0.1139874739039666, 0.11356993736951983, 0.1478079331941545, 0.1544885177453027, 0.1674321503131524, 0.2384133611691023, 0.22171189979123174, 0.26847599164926933, 0.6718162839248434, 0.6901878914405011, 0.704384133611691, 0.7336116910229645, 0.8346555323590814, 0.853027139874739, 0.8655532359081419, 0.8876826722338205, 0.9127348643006263, 0.9252609603340293, 0.9331941544885177, 0.9427974947807933, 0.9473903966597077, 0.9453027139874739, 0.9394572025052192, 0.9302713987473904, 0.9219206680584551, 0.9077244258872651, 0.8751565762004175, 0.8559498956158664, 0.8430062630480167, 0.7766179540709812, 0.7210855949895616, 0.695615866388309, 0.6768267223382046, 0.6643006263048017, 0.13277661795407097, 0.12025052192066805, 0.10772442588726514, 0.10688935281837161, 0.1022964509394572, 0.09937369519832985, 0.09812108559498957, 0.09895615866388309, 0.09812108559498957, 0.0977035490605428, 0.09728601252609603, 0.09728601252609603, 0.09728601252609603, 0.09728601252609603, 0.09728601252609603, 0.09728601252609603, 0.09728601252609603, 0.09728601252609603, 0.09812108559498957, 0.09812108559498957, 0.09937369519832985, 0.10020876826722339, 0.10187891440501044, 0.11315240083507307, 0.1315240083507307, 0.1453027139874739, 0.18538622129436325, 0.3219206680584551, 0.5277661795407098], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/IF3_C.gap.json b/pfam_gap_rates/IF3_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..27f2382ebbd9ad19233aaae221b17b37b016d2cb
--- /dev/null
+++ b/pfam_gap_rates/IF3_C.gap.json
@@ -0,0 +1 @@
+{"family": "IF3_C", "n_seqs": 2409, "length": 86, "gap_rates": [0.44209215442092153, 0.1012868410128684, 0.026151930261519303, 0.009547530095475302, 0.0091324200913242, 0.008717310087173101, 0.008302200083022002, 0.007056870070568701, 0.006641760066417601, 0.005811540058115401, 0.005811540058115401, 0.005811540058115401, 0.005811540058115401, 0.005811540058115401, 0.005811540058115401, 0.005811540058115401, 0.005811540058115401, 0.005811540058115401, 0.005396430053964301, 0.005396430053964301, 0.0049813200498132005, 0.0049813200498132005, 0.0049813200498132005, 0.0049813200498132005, 0.0045662100456621, 0.0045662100456621, 0.0045662100456621, 0.0049813200498132005, 0.005396430053964301, 0.0049813200498132005, 0.0049813200498132005, 0.0045662100456621, 0.004151100041511001, 0.0037359900373599006, 0.0037359900373599006, 0.0037359900373599006, 0.004151100041511001, 0.0029057700290577005, 0.0037359900373599006, 0.010792860107928601, 0.0091324200913242, 0.009547530095475302, 0.012868410128684102, 0.008717310087173101, 0.009962640099626401, 0.010792860107928601, 0.014528850145288501, 0.012453300124533, 0.011623080116230802, 0.012038190120381901, 0.0091324200913242, 0.009962640099626401, 0.0091324200913242, 0.0078870900788709, 0.0078870900788709, 0.0078870900788709, 0.0078870900788709, 0.008302200083022002, 0.008717310087173101, 0.008717310087173101, 0.0091324200913242, 0.009962640099626401, 0.0112079701120797, 0.0182648401826484, 0.021170610211706103, 0.026567040265670402, 0.030303030303030304, 0.030718140307181403, 0.028642590286425903, 0.0319634703196347, 0.034454130344541305, 0.042756330427563306, 0.0460772104607721, 0.053134080531340805, 0.057700290577002905, 0.05977584059775841, 0.06434205064342051, 0.0676629306766293, 0.0701535907015359, 0.07264425072644251, 0.07513491075134911, 0.07887090078870901, 0.08260689082606891, 0.10709838107098381, 0.14694894146948942, 0.49979244499792447], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/IGFBP.gap.json b/pfam_gap_rates/IGFBP.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d78a5aa6adcbbfc793403057f3ac233d63cf96f6
--- /dev/null
+++ b/pfam_gap_rates/IGFBP.gap.json
@@ -0,0 +1 @@
+{"family": "IGFBP", "n_seqs": 399, "length": 68, "gap_rates": [0.09273182957393483, 0.09523809523809523, 0.09022556390977443, 0.43107769423558895, 0.042606516290726815, 0.37844611528822053, 0.3609022556390977, 0.2756892230576441, 0.11027568922305764, 0.8245614035087719, 0.8245614035087719, 0.7844611528822055, 0.03007518796992481, 0.8822055137844611, 0.03508771929824561, 0.11027568922305764, 0.17293233082706766, 0.9398496240601504, 0.21804511278195488, 0.02506265664160401, 0.022556390977443608, 0.020050125313283207, 0.2631578947368421, 0.22807017543859648, 0.22055137844611528, 0.08270676691729323, 0.3383458646616541, 0.3007518796992481, 0.012531328320802004, 0.8546365914786967, 0.010025062656641603, 0.007518796992481203, 0.005012531328320802, 0.005012531328320802, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.6741854636591479, 0.8245614035087719, 0.8471177944862155, 0.6917293233082706, 0.6691729323308271, 0.0, 0.015037593984962405, 0.020050125313283207, 0.3358395989974937, 0.007518796992481203, 0.007518796992481203, 0.007518796992481203, 0.6165413533834586, 0.6165413533834586, 0.010025062656641603, 0.017543859649122806, 0.017543859649122806, 0.017543859649122806, 0.017543859649122806], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/ILEI.gap.json b/pfam_gap_rates/ILEI.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..3d2191e4aab008b4ba5abb886acc9d096e02a649
--- /dev/null
+++ b/pfam_gap_rates/ILEI.gap.json
@@ -0,0 +1 @@
+{"family": "ILEI", "n_seqs": 410, "length": 101, "gap_rates": [0.28780487804878047, 0.12439024390243902, 0.1073170731707317, 0.1073170731707317, 0.1073170731707317, 0.1073170731707317, 0.1024390243902439, 0.1, 0.0975609756097561, 0.1073170731707317, 0.12439024390243902, 0.10975609756097561, 0.1048780487804878, 0.08780487804878048, 0.08292682926829269, 0.08048780487804878, 0.06829268292682927, 0.06829268292682927, 0.06585365853658537, 0.07073170731707316, 0.05609756097560976, 0.05609756097560976, 0.05609756097560976, 0.17317073170731706, 0.6073170731707317, 0.9414634146341463, 0.36341463414634145, 0.13414634146341464, 0.848780487804878, 0.08780487804878048, 0.06341463414634146, 0.05365853658536585, 0.024390243902439025, 0.9292682926829269, 0.9390243902439024, 0.9243902439024391, 0.01951219512195122, 0.01951219512195122, 0.01951219512195122, 0.01951219512195122, 0.01707317073170732, 0.01707317073170732, 0.01707317073170732, 0.8829268292682927, 0.01707317073170732, 0.014634146341463415, 0.014634146341463415, 0.014634146341463415, 0.01707317073170732, 0.014634146341463415, 0.01707317073170732, 0.012195121951219513, 0.012195121951219513, 0.012195121951219513, 0.012195121951219513, 0.012195121951219513, 0.00975609756097561, 0.007317073170731708, 0.00975609756097561, 0.012195121951219513, 0.9292682926829269, 0.9463414634146341, 0.9097560975609756, 0.13902439024390245, 0.11951219512195121, 0.05121951219512195, 0.024390243902439025, 0.014634146341463415, 0.07317073170731707, 0.02926829268292683, 0.026829268292682926, 0.026829268292682926, 0.01951219512195122, 0.02195121951219512, 0.01707317073170732, 0.01707317073170732, 0.01707317073170732, 0.9024390243902439, 0.01707317073170732, 0.01707317073170732, 0.01707317073170732, 0.01951219512195122, 0.0975609756097561, 0.03902439024390244, 0.04390243902439024, 0.041463414634146344, 0.03902439024390244, 0.0951219512195122, 0.08536585365853659, 0.04390243902439024, 0.04390243902439024, 0.04390243902439024, 0.04390243902439024, 0.046341463414634146, 0.05121951219512195, 0.05365853658536585, 0.05853658536585366, 0.07317073170731707, 0.0951219512195122, 0.16097560975609757, 0.6829268292682927], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/ILVD_EDD.gap.json b/pfam_gap_rates/ILVD_EDD.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..99d3dd60fa82e09cff89264a88fae775e1669a07
--- /dev/null
+++ b/pfam_gap_rates/ILVD_EDD.gap.json
@@ -0,0 +1 @@
+{"family": "ILVD_EDD", "n_seqs": 3030, "length": 614, "gap_rates": [0.21023102310231023, 0.12277227722772277, 0.0900990099009901, 0.0834983498349835, 0.08316831683168317, 0.08316831683168317, 0.08283828382838283, 0.08283828382838283, 0.08217821782178218, 0.08184818481848184, 0.08118811881188119, 0.08085808580858085, 0.07524752475247524, 0.06501650165016502, 0.06369636963696369, 0.06303630363036304, 0.062376237623762376, 0.06072607260726073, 0.06006600660066007, 0.059735973597359736, 0.05907590759075908, 0.05841584158415842, 0.05841584158415842, 0.058085808580858087, 0.057755775577557754, 0.057755775577557754, 0.057755775577557754, 0.057755775577557754, 0.05841584158415842, 0.05841584158415842, 0.05841584158415842, 0.05841584158415842, 0.05841584158415842, 0.058745874587458745, 0.05841584158415842, 0.05841584158415842, 0.058745874587458745, 0.09174917491749175, 0.060396039603960394, 0.057095709570957096, 0.056105610561056105, 0.9217821782178218, 0.08745874587458746, 0.05577557755775578, 0.056105610561056105, 0.05577557755775578, 0.055445544554455446, 0.1768976897689769, 0.18052805280528053, 0.1910891089108911, 0.19075907590759075, 0.19900990099009902, 0.1900990099009901, 0.07425742574257425, 0.07161716171617162, 0.06633663366336634, 0.06303630363036304, 0.059735973597359736, 0.058085808580858087, 0.9462046204620462, 0.8821782178217822, 0.05577557755775578, 0.055445544554455446, 0.055115511551155114, 0.05478547854785479, 0.12739273927392739, 0.05478547854785479, 0.054455445544554455, 0.05412541254125412, 0.0537953795379538, 0.05412541254125412, 0.05412541254125412, 0.054455445544554455, 0.054455445544554455, 0.054455445544554455, 0.055445544554455446, 0.05577557755775578, 0.05577557755775578, 0.055115511551155114, 0.054455445544554455, 0.05478547854785479, 0.054455445544554455, 0.054455445544554455, 0.054455445544554455, 0.054455445544554455, 0.0537953795379538, 0.0537953795379538, 0.053465346534653464, 0.053465346534653464, 0.0537953795379538, 0.054455445544554455, 0.05478547854785479, 0.05478547854785479, 0.055115511551155114, 0.055115511551155114, 0.05478547854785479, 0.055115511551155114, 0.05478547854785479, 0.05478547854785479, 0.05412541254125412, 0.052805280528052806, 0.052805280528052806, 0.05313531353135314, 0.053465346534653464, 0.052805280528052806, 0.052805280528052806, 0.8696369636963697, 0.05313531353135314, 0.053465346534653464, 0.053465346534653464, 0.053465346534653464, 0.053465346534653464, 0.053465346534653464, 0.053465346534653464, 0.053465346534653464, 0.053465346534653464, 0.05412541254125412, 0.05412541254125412, 0.0537953795379538, 0.05412541254125412, 0.05412541254125412, 0.058085808580858087, 0.06864686468646865, 0.07425742574257425, 0.07062706270627063, 0.26798679867986797, 0.8, 0.9148514851485149, 0.9475247524752475, 0.8788778877887788, 0.6333333333333333, 0.265016501650165, 0.22211221122112212, 0.20033003300330032, 0.2066006600660066, 0.20957095709570958, 0.17392739273927393, 0.8960396039603961, 0.08547854785478548, 0.06501650165016502, 0.06435643564356436, 0.05643564356435644, 0.05676567656765676, 0.05643564356435644, 0.056105610561056105, 0.934983498349835, 0.057095709570957096, 0.056105610561056105, 0.05478547854785479, 0.055115511551155114, 0.05478547854785479, 0.055445544554455446, 0.05577557755775578, 0.054455445544554455, 0.0537953795379538, 0.053465346534653464, 0.053465346534653464, 0.0537953795379538, 0.053465346534653464, 0.053465346534653464, 0.053465346534653464, 0.053465346534653464, 0.053465346534653464, 0.053465346534653464, 0.053465346534653464, 0.05313531353135314, 0.05313531353135314, 0.0537953795379538, 0.054455445544554455, 0.05412541254125412, 0.05412541254125412, 0.054455445544554455, 0.054455445544554455, 0.05412541254125412, 0.053465346534653464, 0.054455445544554455, 0.054455445544554455, 0.05412541254125412, 0.05412541254125412, 0.05412541254125412, 0.05247524752475247, 0.05247524752475247, 0.05247524752475247, 0.05247524752475247, 0.05214521452145215, 0.05214521452145215, 0.051815181518151815, 0.051815181518151815, 0.05214521452145215, 0.05148514851485148, 0.05148514851485148, 0.051815181518151815, 0.051815181518151815, 0.051815181518151815, 0.051815181518151815, 0.05214521452145215, 0.051815181518151815, 0.051815181518151815, 0.05214521452145215, 0.05214521452145215, 0.05214521452145215, 0.05247524752475247, 0.05247524752475247, 0.05247524752475247, 0.05247524752475247, 0.052805280528052806, 0.052805280528052806, 0.05247524752475247, 0.05247524752475247, 0.05214521452145215, 0.052805280528052806, 0.052805280528052806, 0.052805280528052806, 0.052805280528052806, 0.05247524752475247, 0.05247524752475247, 0.052805280528052806, 0.052805280528052806, 0.052805280528052806, 0.05412541254125412, 0.7429042904290429, 0.8118811881188119, 0.8696369636963697, 0.8871287128712871, 0.8148514851485148, 0.80990099009901, 0.7303630363036303, 0.055115511551155114, 0.11221122112211221, 0.053465346534653464, 0.901980198019802, 0.8722772277227723, 0.053465346534653464, 0.05313531353135314, 0.05313531353135314, 0.898019801980198, 0.05313531353135314, 0.053465346534653464, 0.05676567656765676, 0.052805280528052806, 0.0537953795379538, 0.05247524752475247, 0.05247524752475247, 0.05247524752475247, 0.052805280528052806, 0.052805280528052806, 0.052805280528052806, 0.05313531353135314, 0.05313531353135314, 0.052805280528052806, 0.052805280528052806, 0.052805280528052806, 0.05148514851485148, 0.05148514851485148, 0.051815181518151815, 0.051815181518151815, 0.05247524752475247, 0.052805280528052806, 0.052805280528052806, 0.052805280528052806, 0.05247524752475247, 0.05247524752475247, 0.05214521452145215, 0.051815181518151815, 0.051815181518151815, 0.051815181518151815, 0.051815181518151815, 0.05148514851485148, 0.05115511551155116, 0.05148514851485148, 0.05148514851485148, 0.05115511551155116, 0.05148514851485148, 0.05148514851485148, 0.05148514851485148, 0.05214521452145215, 0.05148514851485148, 0.05148514851485148, 0.05148514851485148, 0.05148514851485148, 0.051815181518151815, 0.051815181518151815, 0.05313531353135314, 0.05247524752475247, 0.05148514851485148, 0.052805280528052806, 0.053465346534653464, 0.050825082508250824, 0.0504950495049505, 0.050825082508250824, 0.05115511551155116, 0.05115511551155116, 0.05115511551155116, 0.05148514851485148, 0.05148514851485148, 0.05115511551155116, 0.8247524752475247, 0.05247524752475247, 0.05313531353135314, 0.052805280528052806, 0.052805280528052806, 0.05412541254125412, 0.051815181518151815, 0.051815181518151815, 0.051815181518151815, 0.051815181518151815, 0.05247524752475247, 0.05214521452145215, 0.05214521452145215, 0.051815181518151815, 0.05214521452145215, 0.05214521452145215, 0.05214521452145215, 0.05313531353135314, 0.05313531353135314, 0.05115511551155116, 0.05148514851485148, 0.05148514851485148, 0.05115511551155116, 0.05115511551155116, 0.1485148514851485, 0.15016501650165018, 0.9396039603960396, 0.10528052805280529, 0.1033003300330033, 0.053465346534653464, 0.05841584158415842, 0.059735973597359736, 0.05115511551155116, 0.05115511551155116, 0.050165016501650166, 0.04983498349834983, 0.050165016501650166, 0.050165016501650166, 0.050165016501650166, 0.06864686468646865, 0.05214521452145215, 0.0504950495049505, 0.0504950495049505, 0.050825082508250824, 0.07194719471947195, 0.07392739273927393, 0.07788778877887789, 0.07590759075907591, 0.9429042904290429, 0.7267326732673267, 0.08283828382838283, 0.11716171617161716, 0.12805280528052806, 0.3537953795379538, 0.6250825082508251, 0.6541254125412541, 0.668976897689769, 0.6788778877887789, 0.6834983498349835, 0.6884488448844884, 0.7547854785478548, 0.7940594059405941, 0.8115511551155116, 0.8135313531353136, 0.8191419141914191, 0.8198019801980198, 0.8204620462046205, 0.8204620462046205, 0.8211221122112211, 0.8214521452145215, 0.8217821782178217, 0.8336633663366336, 0.9273927392739274, 0.8227722772277227, 0.8217821782178217, 0.8214521452145215, 0.8204620462046205, 0.8204620462046205, 0.8198019801980198, 0.8194719471947195, 0.8145214521452145, 0.8132013201320132, 0.8095709570957096, 0.7768976897689769, 0.699009900990099, 0.6877887788778878, 0.6811881188118812, 0.6745874587458746, 0.6574257425742575, 0.6415841584158416, 0.6181518151815182, 0.05412541254125412, 0.05313531353135314, 0.052805280528052806, 0.052805280528052806, 0.05313531353135314, 0.052805280528052806, 0.054455445544554455, 0.055115511551155114, 0.053465346534653464, 0.05313531353135314, 0.052805280528052806, 0.0537953795379538, 0.05412541254125412, 0.05214521452145215, 0.053465346534653464, 0.05148514851485148, 0.05115511551155116, 0.05148514851485148, 0.05148514851485148, 0.051815181518151815, 0.05247524752475247, 0.05247524752475247, 0.05247524752475247, 0.05247524752475247, 0.05247524752475247, 0.05247524752475247, 0.16666666666666666, 0.19966996699669967, 0.16105610561056105, 0.06831683168316832, 0.8910891089108911, 0.052805280528052806, 0.05313531353135314, 0.052805280528052806, 0.05313531353135314, 0.053465346534653464, 0.053465346534653464, 0.053465346534653464, 0.053465346534653464, 0.053465346534653464, 0.30264026402640265, 0.299009900990099, 0.05676567656765676, 0.05643564356435644, 0.05577557755775578, 0.9409240924092409, 0.9409240924092409, 0.9412541254125413, 0.9409240924092409, 0.9409240924092409, 0.9405940594059405, 0.0537953795379538, 0.05313531353135314, 0.052805280528052806, 0.05313531353135314, 0.052805280528052806, 0.052805280528052806, 0.05247524752475247, 0.05214521452145215, 0.051815181518151815, 0.05214521452145215, 0.051815181518151815, 0.051815181518151815, 0.05148514851485148, 0.05148514851485148, 0.05115511551155116, 0.05148514851485148, 0.05148514851485148, 0.05148514851485148, 0.05313531353135314, 0.052805280528052806, 0.8871287128712871, 0.05247524752475247, 0.8491749174917492, 0.05247524752475247, 0.052805280528052806, 0.052805280528052806, 0.052805280528052806, 0.052805280528052806, 0.05214521452145215, 0.9297029702970298, 0.9273927392739274, 0.05214521452145215, 0.05115511551155116, 0.050825082508250824, 0.050825082508250824, 0.0504950495049505, 0.050165016501650166, 0.050165016501650166, 0.0504950495049505, 0.050825082508250824, 0.05214521452145215, 0.17425742574257425, 0.05148514851485148, 0.0858085808580858, 0.05148514851485148, 0.04983498349834983, 0.04950495049504951, 0.04983498349834983, 0.050165016501650166, 0.7356435643564356, 0.7336633663366336, 0.0504950495049505, 0.0504950495049505, 0.0504950495049505, 0.0504950495049505, 0.050165016501650166, 0.050825082508250824, 0.051815181518151815, 0.05115511551155116, 0.05115511551155116, 0.05115511551155116, 0.16303630363036303, 0.056105610561056105, 0.2438943894389439, 0.0594059405940594, 0.051815181518151815, 0.050825082508250824, 0.050825082508250824, 0.050825082508250824, 0.050825082508250824, 0.05115511551155116, 0.05115511551155116, 0.05115511551155116, 0.05148514851485148, 0.05115511551155116, 0.05148514851485148, 0.05115511551155116, 0.05115511551155116, 0.05115511551155116, 0.8834983498349835, 0.05148514851485148, 0.050165016501650166, 0.050165016501650166, 0.04983498349834983, 0.04950495049504951, 0.049174917491749175, 0.04884488448844884, 0.04950495049504951, 0.049174917491749175, 0.049174917491749175, 0.04950495049504951, 0.04950495049504951, 0.049174917491749175, 0.049174917491749175, 0.049174917491749175, 0.049174917491749175, 0.049174917491749175, 0.04950495049504951, 0.04950495049504951, 0.04950495049504951, 0.04983498349834983, 0.04950495049504951, 0.04950495049504951, 0.04950495049504951, 0.04983498349834983, 0.04983498349834983, 0.04983498349834983, 0.04983498349834983, 0.04950495049504951, 0.04983498349834983, 0.04983498349834983, 0.04983498349834983, 0.04983498349834983, 0.04983498349834983, 0.04983498349834983, 0.04983498349834983, 0.04983498349834983, 0.05115511551155116, 0.0537953795379538, 0.0594059405940594, 0.06666666666666667, 0.0834983498349835, 0.08250825082508251, 0.07293729372937294, 0.06468646864686468, 0.06534653465346535, 0.066006600660066, 0.06633663366336634, 0.06666666666666667, 0.9231023102310231, 0.06699669966996699, 0.8864686468646865, 0.8887788778877888, 0.9297029702970298, 0.9386138613861386, 0.931023102310231, 0.8966996699669967, 0.8871287128712871, 0.8825082508250826, 0.07986798679867987, 0.07623762376237624, 0.07491749174917492, 0.0768976897689769, 0.6102310231023103, 0.8854785478547855, 0.7900990099009901, 0.1957095709570957, 0.09867986798679867, 0.1099009900990099, 0.7844884488448844, 0.8993399339933993, 0.9465346534653465, 0.9214521452145215, 0.8504950495049505, 0.6250825082508251, 0.07887788778877888, 0.07392739273927393, 0.5412541254125413, 0.07392739273927393, 0.07392739273927393, 0.0745874587458746, 0.07491749174917492, 0.07491749174917492, 0.07491749174917492, 0.07524752475247524, 0.07557755775577557, 0.07623762376237624, 0.07722772277227723, 0.07755775577557755, 0.07953795379537953, 0.0801980198019802, 0.08085808580858085, 0.08151815181518152, 0.08184818481848184, 0.08250825082508251, 0.19042904290429044], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/IQ_SEC7_PH.gap.json b/pfam_gap_rates/IQ_SEC7_PH.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b3b4c73eb039846afcbda892f0f7e41efea8e515
--- /dev/null
+++ b/pfam_gap_rates/IQ_SEC7_PH.gap.json
@@ -0,0 +1 @@
+{"family": "IQ_SEC7_PH", "n_seqs": 150, "length": 160, "gap_rates": [0.62, 0.38666666666666666, 0.16, 0.12666666666666668, 0.10666666666666667, 0.10666666666666667, 0.10666666666666667, 0.10666666666666667, 0.10666666666666667, 0.10666666666666667, 0.10666666666666667, 0.10666666666666667, 0.10666666666666667, 0.10666666666666667, 0.10666666666666667, 0.10666666666666667, 0.11333333333333333, 0.11333333333333333, 0.10666666666666667, 0.10666666666666667, 0.10666666666666667, 0.10666666666666667, 0.11333333333333333, 0.12, 0.11333333333333333, 0.10666666666666667, 0.10666666666666667, 0.10666666666666667, 0.09333333333333334, 0.09333333333333334, 0.12666666666666668, 0.11333333333333333, 0.08666666666666667, 0.08666666666666667, 0.08666666666666667, 0.08, 0.08, 0.08, 0.08, 0.08, 0.08, 0.07333333333333333, 0.07333333333333333, 0.07333333333333333, 0.07333333333333333, 0.08, 0.08, 0.1, 0.1, 0.07333333333333333, 0.08, 0.08, 0.08666666666666667, 0.08, 0.07333333333333333, 0.07333333333333333, 0.88, 0.9333333333333333, 0.88, 0.11333333333333333, 0.08666666666666667, 0.05333333333333334, 0.03333333333333333, 0.03333333333333333, 0.03333333333333333, 0.03333333333333333, 0.03333333333333333, 0.04, 0.04, 0.04, 0.04, 0.04, 0.04, 0.04, 0.04666666666666667, 0.06, 0.06, 0.04, 0.04, 0.04, 0.04666666666666667, 0.04666666666666667, 0.06, 0.07333333333333333, 0.07333333333333333, 0.07333333333333333, 0.08, 0.08, 0.08, 0.94, 0.94, 0.94, 0.94, 0.94, 0.94, 0.94, 0.9466666666666667, 0.9466666666666667, 0.9466666666666667, 0.9466666666666667, 0.94, 0.94, 0.94, 0.94, 0.94, 0.94, 0.94, 0.94, 0.11333333333333333, 0.12, 0.22666666666666666, 0.23333333333333334, 0.56, 0.54, 0.47333333333333333, 0.09333333333333334, 0.09333333333333334, 0.07333333333333333, 0.07333333333333333, 0.07333333333333333, 0.07333333333333333, 0.07333333333333333, 0.07333333333333333, 0.07333333333333333, 0.08, 0.08, 0.08, 0.08, 0.08, 0.08, 0.08, 0.08, 0.08666666666666667, 0.08666666666666667, 0.08666666666666667, 0.08666666666666667, 0.08666666666666667, 0.08666666666666667, 0.08666666666666667, 0.09333333333333334, 0.09333333333333334, 0.09333333333333334, 0.09333333333333334, 0.09333333333333334, 0.10666666666666667, 0.12666666666666668, 0.14, 0.13333333333333333, 0.16666666666666666, 0.16666666666666666, 0.18666666666666668, 0.21333333333333335, 0.22666666666666666, 0.22666666666666666, 0.23333333333333334, 0.24666666666666667, 0.26, 0.25333333333333335, 0.2866666666666667, 0.3333333333333333], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Ig_3.gap.json b/pfam_gap_rates/Ig_3.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..8199224aeefa3ca05104d577aa76d8ae86155ac3
--- /dev/null
+++ b/pfam_gap_rates/Ig_3.gap.json
@@ -0,0 +1 @@
+{"family": "Ig_3", "n_seqs": 5000, "length": 102, "gap_rates": [0.6456, 0.4356, 0.413, 0.3594, 0.3344, 0.9218, 0.3044, 0.2612, 0.22, 0.1924, 0.168, 0.1528, 0.1776, 0.9202, 0.784, 0.098, 0.0358, 0.0214, 0.0158, 0.0108, 0.0066, 0.0046, 0.0034, 0.0026, 0.0018, 0.0016, 0.0016, 0.0014, 0.8776, 0.0356, 0.0122, 0.004, 0.0044, 0.0052, 0.0046, 0.9286, 0.7278, 0.0042, 0.0016, 0.0002, 0.0, 0.0, 0.0, 0.0002, 0.0004, 0.0006, 0.146, 0.7566, 0.9058, 0.8398, 0.6262, 0.2826, 0.391, 0.199, 0.4434, 0.4488, 0.4476, 0.3566, 0.6006, 0.4232, 0.672, 0.7568, 0.8142, 0.8794, 0.9134, 0.9372, 0.9452, 0.927, 0.9002, 0.8484, 0.7826, 0.7172, 0.6272, 0.3166, 0.1874, 0.0792, 0.025, 0.0172, 0.0168, 0.0156, 0.015, 0.011, 0.0108, 0.0116, 0.0138, 0.0148, 0.0128, 0.0356, 0.028, 0.0138, 0.0132, 0.0136, 0.0134, 0.014, 0.0146, 0.015, 0.015, 0.016, 0.0202, 0.0704, 0.1544, 0.262], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Img2.gap.json b/pfam_gap_rates/Img2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f6444e0843a8795e72f29faeee84f9c40e881a08
--- /dev/null
+++ b/pfam_gap_rates/Img2.gap.json
@@ -0,0 +1 @@
+{"family": "Img2", "n_seqs": 242, "length": 106, "gap_rates": [0.4669421487603306, 0.06198347107438017, 0.02066115702479339, 0.008264462809917356, 0.008264462809917356, 0.008264462809917356, 0.008264462809917356, 0.008264462809917356, 0.008264462809917356, 0.008264462809917356, 0.9421487603305785, 0.008264462809917356, 0.008264462809917356, 0.008264462809917356, 0.008264462809917356, 0.008264462809917356, 0.008264462809917356, 0.008264462809917356, 0.008264462809917356, 0.004132231404958678, 0.004132231404958678, 0.024793388429752067, 0.18181818181818182, 0.871900826446281, 0.871900826446281, 0.8801652892561983, 0.9090909090909091, 0.9090909090909091, 0.8801652892561983, 0.8801652892561983, 0.871900826446281, 0.871900826446281, 0.07024793388429752, 0.02066115702479339, 0.01652892561983471, 0.01652892561983471, 0.01652892561983471, 0.008264462809917356, 0.008264462809917356, 0.008264462809917356, 0.008264462809917356, 0.008264462809917356, 0.004132231404958678, 0.004132231404958678, 0.004132231404958678, 0.008264462809917356, 0.008264462809917356, 0.01652892561983471, 0.045454545454545456, 0.049586776859504134, 0.049586776859504134, 0.045454545454545456, 0.04132231404958678, 0.04132231404958678, 0.04132231404958678, 0.04132231404958678, 0.04132231404958678, 0.04132231404958678, 0.04132231404958678, 0.19008264462809918, 0.3305785123966942, 0.5413223140495868, 0.6446280991735537, 0.8801652892561983, 0.6033057851239669, 0.34710743801652894, 0.2396694214876033, 0.10743801652892562, 0.8636363636363636, 0.8842975206611571, 0.9214876033057852, 0.9462809917355371, 0.9380165289256198, 0.9173553719008265, 0.8677685950413223, 0.8636363636363636, 0.049586776859504134, 0.05371900826446281, 0.05785123966942149, 0.06198347107438017, 0.05785123966942149, 0.9421487603305785, 0.049586776859504134, 0.045454545454545456, 0.045454545454545456, 0.045454545454545456, 0.045454545454545456, 0.049586776859504134, 0.049586776859504134, 0.049586776859504134, 0.07024793388429752, 0.07024793388429752, 0.07024793388429752, 0.0743801652892562, 0.08677685950413223, 0.08677685950413223, 0.08677685950413223, 0.08677685950413223, 0.08677685950413223, 0.09090909090909091, 0.09090909090909091, 0.10743801652892562, 0.12396694214876033, 0.16115702479338842, 0.19834710743801653, 0.24380165289256198], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Inhibitor_I69.gap.json b/pfam_gap_rates/Inhibitor_I69.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..42dd1beaf97b4d0902ab5de95674bd9904137616
--- /dev/null
+++ b/pfam_gap_rates/Inhibitor_I69.gap.json
@@ -0,0 +1 @@
+{"family": "Inhibitor_I69", "n_seqs": 116, "length": 116, "gap_rates": [0.4827586206896552, 0.3793103448275862, 0.25862068965517243, 0.1896551724137931, 0.1810344827586207, 0.1724137931034483, 0.16379310344827586, 0.16379310344827586, 0.16379310344827586, 0.15517241379310345, 0.14655172413793102, 0.14655172413793102, 0.14655172413793102, 0.14655172413793102, 0.14655172413793102, 0.14655172413793102, 0.14655172413793102, 0.13793103448275862, 0.13793103448275862, 0.13793103448275862, 0.13793103448275862, 0.13793103448275862, 0.14655172413793102, 0.15517241379310345, 0.14655172413793102, 0.3620689655172414, 0.39655172413793105, 0.4396551724137931, 0.46551724137931033, 0.47413793103448276, 0.5172413793103449, 0.5603448275862069, 0.6379310344827587, 0.5948275862068966, 0.6982758620689655, 0.7586206896551724, 0.8189655172413793, 0.8793103448275862, 0.9137931034482759, 0.9482758620689655, 0.9310344827586207, 0.8793103448275862, 0.8620689655172413, 0.7931034482758621, 0.7068965517241379, 0.646551724137931, 0.08620689655172414, 0.06896551724137931, 0.06896551724137931, 0.0603448275862069, 0.05172413793103448, 0.05172413793103448, 0.034482758620689655, 0.034482758620689655, 0.02586206896551724, 0.02586206896551724, 0.017241379310344827, 0.017241379310344827, 0.008620689655172414, 0.0, 0.0, 0.0, 0.008620689655172414, 0.0, 0.0, 0.0, 0.0, 0.0, 0.08620689655172414, 0.4482758620689655, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.008620689655172414, 0.008620689655172414, 0.008620689655172414, 0.9482758620689655, 0.008620689655172414, 0.008620689655172414, 0.008620689655172414, 0.008620689655172414, 0.008620689655172414, 0.008620689655172414, 0.008620689655172414, 0.008620689655172414, 0.008620689655172414, 0.008620689655172414, 0.04310344827586207, 0.008620689655172414, 0.10344827586206896, 0.08620689655172414, 0.9137931034482759, 0.08620689655172414, 0.06896551724137931, 0.0603448275862069, 0.07758620689655173, 0.853448275862069, 0.07758620689655173, 0.09482758620689655, 0.09482758620689655, 0.10344827586206896, 0.11206896551724138, 0.1206896551724138, 0.12931034482758622, 0.12931034482758622, 0.15517241379310345, 0.1896551724137931, 0.21551724137931033, 0.29310344827586204, 0.4482758620689655, 0.6551724137931034], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Ino80_Iec3.gap.json b/pfam_gap_rates/Ino80_Iec3.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d753aad89b01eb78d7c98464791353eb5f972375
--- /dev/null
+++ b/pfam_gap_rates/Ino80_Iec3.gap.json
@@ -0,0 +1 @@
+{"family": "Ino80_Iec3", "n_seqs": 102, "length": 286, "gap_rates": [0.4215686274509804, 0.4019607843137255, 0.4019607843137255, 0.38235294117647056, 0.3627450980392157, 0.3627450980392157, 0.3627450980392157, 0.3627450980392157, 0.3627450980392157, 0.3333333333333333, 0.3333333333333333, 0.3333333333333333, 0.3333333333333333, 0.3333333333333333, 0.3333333333333333, 0.3431372549019608, 0.3333333333333333, 0.3137254901960784, 0.3137254901960784, 0.3137254901960784, 0.3137254901960784, 0.3137254901960784, 0.3137254901960784, 0.3137254901960784, 0.3137254901960784, 0.3137254901960784, 0.3137254901960784, 0.3137254901960784, 0.3137254901960784, 0.3137254901960784, 0.3137254901960784, 0.3137254901960784, 0.3137254901960784, 0.3137254901960784, 0.3137254901960784, 0.3137254901960784, 0.3137254901960784, 0.3137254901960784, 0.3137254901960784, 0.3137254901960784, 0.3137254901960784, 0.3137254901960784, 0.3235294117647059, 0.3137254901960784, 0.3137254901960784, 0.3235294117647059, 0.3235294117647059, 0.3235294117647059, 0.3333333333333333, 0.3333333333333333, 0.3333333333333333, 0.3333333333333333, 0.3431372549019608, 0.3333333333333333, 0.3333333333333333, 0.3431372549019608, 0.3431372549019608, 0.3431372549019608, 0.3431372549019608, 0.3431372549019608, 0.3431372549019608, 0.3431372549019608, 0.3431372549019608, 0.3431372549019608, 0.3431372549019608, 0.3431372549019608, 0.3431372549019608, 0.3431372549019608, 0.3431372549019608, 0.35294117647058826, 0.7450980392156863, 0.8725490196078431, 0.9313725490196079, 0.7941176470588235, 0.7156862745098039, 0.6078431372549019, 0.6862745098039216, 0.6372549019607843, 0.6372549019607843, 0.6176470588235294, 0.5784313725490197, 0.5588235294117647, 0.5686274509803921, 0.5882352941176471, 0.6078431372549019, 0.6274509803921569, 0.6764705882352942, 0.6666666666666666, 0.6372549019607843, 0.6470588235294118, 0.6568627450980392, 0.6568627450980392, 0.6470588235294118, 0.6470588235294118, 0.6470588235294118, 0.6372549019607843, 0.6372549019607843, 0.6372549019607843, 0.8921568627450981, 0.8823529411764706, 0.6372549019607843, 0.6372549019607843, 0.6470588235294118, 0.6372549019607843, 0.6372549019607843, 0.6274509803921569, 0.6274509803921569, 0.6274509803921569, 0.6274509803921569, 0.6274509803921569, 0.6274509803921569, 0.6274509803921569, 0.6274509803921569, 0.6274509803921569, 0.6372549019607843, 0.6372549019607843, 0.6372549019607843, 0.7352941176470589, 0.7352941176470589, 0.7450980392156863, 0.7450980392156863, 0.7352941176470589, 0.7352941176470589, 0.7254901960784313, 0.7156862745098039, 0.7156862745098039, 0.7156862745098039, 0.7156862745098039, 0.696078431372549, 0.6666666666666666, 0.6176470588235294, 0.5686274509803921, 0.5098039215686274, 0.45098039215686275, 0.4019607843137255, 0.4019607843137255, 0.38235294117647056, 0.38235294117647056, 0.38235294117647056, 0.38235294117647056, 0.38235294117647056, 0.38235294117647056, 0.37254901960784315, 0.5, 0.38235294117647056, 0.3627450980392157, 0.3627450980392157, 0.38235294117647056, 0.4019607843137255, 0.43137254901960786, 0.4411764705882353, 0.49019607843137253, 0.5, 0.5882352941176471, 0.6274509803921569, 0.6862745098039216, 0.6176470588235294, 0.5784313725490197, 0.4215686274509804, 0.4019607843137255, 0.38235294117647056, 0.37254901960784315, 0.37254901960784315, 0.37254901960784315, 0.37254901960784315, 0.37254901960784315, 0.37254901960784315, 0.37254901960784315, 0.39215686274509803, 0.4019607843137255, 0.8333333333333334, 0.8627450980392157, 0.8823529411764706, 0.8823529411764706, 0.8823529411764706, 0.8725490196078431, 0.8627450980392157, 0.8137254901960784, 0.47058823529411764, 0.47058823529411764, 0.45098039215686275, 0.38235294117647056, 0.3627450980392157, 0.3627450980392157, 0.3627450980392157, 0.3627450980392157, 0.3627450980392157, 0.3627450980392157, 0.3627450980392157, 0.3627450980392157, 0.3627450980392157, 0.3627450980392157, 0.3627450980392157, 0.3627450980392157, 0.3627450980392157, 0.3627450980392157, 0.3627450980392157, 0.3627450980392157, 0.3627450980392157, 0.3627450980392157, 0.3627450980392157, 0.3627450980392157, 0.3627450980392157, 0.3627450980392157, 0.3627450980392157, 0.3627450980392157, 0.7745098039215687, 0.6666666666666666, 0.6470588235294118, 0.6176470588235294, 0.5980392156862745, 0.6078431372549019, 0.7843137254901961, 0.5490196078431373, 0.5196078431372549, 0.49019607843137253, 0.4411764705882353, 0.43137254901960786, 0.4411764705882353, 0.45098039215686275, 0.43137254901960786, 0.4215686274509804, 0.4117647058823529, 0.8529411764705882, 0.8529411764705882, 0.8529411764705882, 0.8529411764705882, 0.8725490196078431, 0.8823529411764706, 0.9117647058823529, 0.9215686274509803, 0.9313725490196079, 0.9411764705882353, 0.9411764705882353, 0.9411764705882353, 0.9411764705882353, 0.9411764705882353, 0.9411764705882353, 0.9411764705882353, 0.9411764705882353, 0.9313725490196079, 0.9313725490196079, 0.9215686274509803, 0.9019607843137255, 0.8725490196078431, 0.8627450980392157, 0.8529411764705882, 0.8529411764705882, 0.8529411764705882, 0.8529411764705882, 0.37254901960784315, 0.4117647058823529, 0.4411764705882353, 0.7450980392156863, 0.6470588235294118, 0.47058823529411764, 0.43137254901960786, 0.4019607843137255, 0.3627450980392157, 0.3627450980392157, 0.3627450980392157, 0.3627450980392157, 0.3627450980392157, 0.3627450980392157, 0.3627450980392157, 0.3627450980392157, 0.3627450980392157, 0.3627450980392157, 0.3627450980392157, 0.3627450980392157, 0.3627450980392157, 0.3627450980392157, 0.3627450980392157, 0.3627450980392157, 0.3627450980392157, 0.37254901960784315, 0.38235294117647056, 0.4019607843137255, 0.4117647058823529, 0.4215686274509804, 0.43137254901960786, 0.4215686274509804, 0.4215686274509804, 0.43137254901960786, 0.43137254901960786, 0.46078431372549017], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Inositol_P.gap.json b/pfam_gap_rates/Inositol_P.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..bf35cb47317056312e34a53cfb6225650062167b
--- /dev/null
+++ b/pfam_gap_rates/Inositol_P.gap.json
@@ -0,0 +1 @@
+{"family": "Inositol_P", "n_seqs": 5000, "length": 364, "gap_rates": [0.8724, 0.7484, 0.674, 0.6054, 0.5324, 0.4678, 0.4102, 0.356, 0.3118, 0.2658, 0.2368, 0.2246, 0.2162, 0.197, 0.1884, 0.185, 0.1786, 0.1682, 0.162, 0.159, 0.156, 0.1526, 0.1496, 0.1612, 0.8716, 0.627, 0.1926, 0.1502, 0.1404, 0.136, 0.1336, 0.1346, 0.17, 0.1894, 0.2096, 0.8986, 0.9448, 0.9304, 0.883, 0.7602, 0.5932, 0.395, 0.1092, 0.0958, 0.0876, 0.0802, 0.0782, 0.0776, 0.0724, 0.0706, 0.064, 0.0638, 0.0632, 0.0626, 0.0628, 0.0626, 0.0624, 0.0622, 0.0606, 0.0604, 0.0602, 0.0716, 0.0668, 0.0616, 0.062, 0.0626, 0.0936, 0.0776, 0.059, 0.0578, 0.0546, 0.0552, 0.054, 0.0568, 0.0564, 0.056, 0.0562, 0.056, 0.0566, 0.0568, 0.0546, 0.8048, 0.8692, 0.8788, 0.8938, 0.896, 0.8992, 0.901, 0.9024, 0.904, 0.9078, 0.9198, 0.932, 0.9378, 0.942, 0.9432, 0.946, 0.9452, 0.943, 0.9406, 0.9342, 0.9264, 0.9142, 0.9046, 0.9032, 0.9018, 0.9002, 0.898, 0.8942, 0.887, 0.8748, 0.8532, 0.7832, 0.686, 0.6314, 0.5058, 0.4322, 0.2344, 0.0744, 0.0632, 0.4566, 0.0632, 0.0476, 0.0452, 0.0458, 0.0456, 0.0454, 0.0454, 0.0452, 0.0456, 0.0458, 0.0454, 0.0448, 0.0442, 0.0442, 0.0446, 0.0444, 0.0436, 0.1162, 0.922, 0.0452, 0.0438, 0.044, 0.044, 0.0442, 0.0438, 0.0438, 0.0438, 0.0438, 0.0442, 0.044, 0.9382, 0.9218, 0.0442, 0.0442, 0.0444, 0.0454, 0.0466, 0.0452, 0.0446, 0.0446, 0.0446, 0.044, 0.0438, 0.044, 0.9332, 0.0492, 0.8886, 0.8942, 0.9034, 0.9186, 0.925, 0.9472, 0.9484, 0.9404, 0.9218, 0.9124, 0.8996, 0.8898, 0.8874, 0.0494, 0.0534, 0.0552, 0.06, 0.0586, 0.0632, 0.0724, 0.0762, 0.1106, 0.0824, 0.0812, 0.0804, 0.0754, 0.0956, 0.0868, 0.073, 0.0698, 0.7198, 0.7704, 0.8844, 0.932, 0.943, 0.9184, 0.8194, 0.7416, 0.6782, 0.1304, 0.1448, 0.11, 0.094, 0.0848, 0.0844, 0.0848, 0.0878, 0.0752, 0.8748, 0.9324, 0.9456, 0.9054, 0.8272, 0.2016, 0.1574, 0.1062, 0.0942, 0.0834, 0.1044, 0.0974, 0.1964, 0.182, 0.276, 0.2272, 0.17, 0.1382, 0.1102, 0.0946, 0.0836, 0.0746, 0.074, 0.0778, 0.0824, 0.095, 0.4986, 0.3828, 0.1968, 0.1482, 0.1238, 0.1, 0.0876, 0.1268, 0.103, 0.0872, 0.0822, 0.0858, 0.1006, 0.1194, 0.8284, 0.8896, 0.9106, 0.9194, 0.937, 0.949, 0.9412, 0.9312, 0.9164, 0.8998, 0.8786, 0.674, 0.5182, 0.3012, 0.1526, 0.108, 0.1556, 0.1366, 0.0672, 0.0612, 0.116, 0.0512, 0.0494, 0.0492, 0.0488, 0.0692, 0.0508, 0.0478, 0.0472, 0.0474, 0.0468, 0.0466, 0.0472, 0.0474, 0.048, 0.048, 0.049, 0.0502, 0.052, 0.8996, 0.9178, 0.9496, 0.9044, 0.8408, 0.6354, 0.0682, 0.0502, 0.0524, 0.0522, 0.0528, 0.0498, 0.0508, 0.0508, 0.0508, 0.0518, 0.0522, 0.0528, 0.0532, 0.0544, 0.0556, 0.0566, 0.0574, 0.06, 0.0624, 0.0662, 0.0708, 0.0764, 0.0808, 0.0834, 0.0866, 0.0926, 0.7462, 0.7826, 0.852, 0.9278, 0.8074, 0.767, 0.7036, 0.192, 0.198, 0.1816, 0.186, 0.9252, 0.2032, 0.2182, 0.2386, 0.2582, 0.2768, 0.2918, 0.304, 0.3212, 0.3398, 0.9484, 0.9296, 0.647, 0.4276, 0.4276, 0.4396, 0.4486, 0.4668, 0.491, 0.5184, 0.5508, 0.5948, 0.6536, 0.7056, 0.7738, 0.8496, 0.917], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Interfer-bind.gap.json b/pfam_gap_rates/Interfer-bind.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..24cb1c0284fa38208a683954c655dcd5c03860ef
--- /dev/null
+++ b/pfam_gap_rates/Interfer-bind.gap.json
@@ -0,0 +1 @@
+{"family": "Interfer-bind", "n_seqs": 201, "length": 115, "gap_rates": [0.5323383084577115, 0.3034825870646766, 0.22885572139303484, 0.19402985074626866, 0.1890547263681592, 0.1890547263681592, 0.18407960199004975, 0.9104477611940298, 0.16417910447761194, 0.16417910447761194, 0.14925373134328357, 0.8606965174129353, 0.14427860696517414, 0.13432835820895522, 0.13432835820895522, 0.12935323383084577, 0.12935323383084577, 0.12437810945273632, 0.11940298507462686, 0.11940298507462686, 0.11940298507462686, 0.10945273631840796, 0.11442786069651742, 0.11442786069651742, 0.11442786069651742, 0.11442786069651742, 0.11940298507462686, 0.48258706467661694, 0.472636815920398, 0.6417910447761194, 0.7512437810945274, 0.6268656716417911, 0.44776119402985076, 0.3333333333333333, 0.2736318407960199, 0.24875621890547264, 0.208955223880597, 0.14427860696517414, 0.07960199004975124, 0.06467661691542288, 0.03482587064676617, 0.029850746268656716, 0.029850746268656716, 0.03482587064676617, 0.03980099502487562, 0.7761194029850746, 0.29850746268656714, 0.04975124378109453, 0.029850746268656716, 0.024875621890547265, 0.024875621890547265, 0.024875621890547265, 0.01990049751243781, 0.024875621890547265, 0.014925373134328358, 0.01990049751243781, 0.01990049751243781, 0.01990049751243781, 0.024875621890547265, 0.01990049751243781, 0.7860696517412935, 0.9203980099502488, 0.7263681592039801, 0.4228855721393035, 0.07960199004975124, 0.03482587064676617, 0.024875621890547265, 0.029850746268656716, 0.029850746268656716, 0.029850746268656716, 0.024875621890547265, 0.024875621890547265, 0.024875621890547265, 0.024875621890547265, 0.024875621890547265, 0.24378109452736318, 0.1044776119402985, 0.024875621890547265, 0.024875621890547265, 0.024875621890547265, 0.024875621890547265, 0.024875621890547265, 0.029850746268656716, 0.024875621890547265, 0.024875621890547265, 0.024875621890547265, 0.024875621890547265, 0.05472636815920398, 0.05472636815920398, 0.05472636815920398, 0.05472636815920398, 0.05472636815920398, 0.05472636815920398, 0.8606965174129353, 0.8109452736318408, 0.24875621890547264, 0.14925373134328357, 0.09950248756218906, 0.11940298507462686, 0.1044776119402985, 0.0945273631840796, 0.0945273631840796, 0.1044776119402985, 0.1044776119402985, 0.1044776119402985, 0.10945273631840796, 0.11442786069651742, 0.11940298507462686, 0.13432835820895522, 0.14427860696517414, 0.15422885572139303, 0.15920398009950248, 0.2537313432835821, 0.44776119402985076, 0.8308457711442786], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/IspD.gap.json b/pfam_gap_rates/IspD.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ffd5d00869b3a7baa861dc61e2e21c56937d91dd
--- /dev/null
+++ b/pfam_gap_rates/IspD.gap.json
@@ -0,0 +1 @@
+{"family": "IspD", "n_seqs": 1885, "length": 240, "gap_rates": [0.7389920424403184, 0.423342175066313, 0.15649867374005305, 0.11671087533156499, 0.10291777188328913, 0.09920424403183024, 0.0960212201591512, 0.0960212201591512, 0.09549071618037135, 0.09549071618037135, 0.09442970822281167, 0.09442970822281167, 0.09336870026525199, 0.07745358090185676, 0.09389920424403184, 0.1220159151193634, 0.08806366047745358, 0.08116710875331565, 0.06896551724137931, 0.06737400530503979, 0.06684350132625995, 0.06737400530503979, 0.06684350132625995, 0.06472148541114059, 0.06419098143236074, 0.06259946949602122, 0.06259946949602122, 0.06206896551724138, 0.06206896551724138, 0.0610079575596817, 0.05782493368700265, 0.057294429708222815, 0.05782493368700265, 0.05782493368700265, 0.05782493368700265, 0.057294429708222815, 0.05676392572944297, 0.05676392572944297, 0.05676392572944297, 0.057294429708222815, 0.13580901856763924, 0.09442970822281167, 0.06631299734748011, 0.05411140583554377, 0.054641909814323604, 0.053580901856763924, 0.0519893899204244, 0.051458885941644564, 0.04986737400530504, 0.050397877984084884, 0.052519893899204244, 0.051458885941644564, 0.05092838196286472, 0.05092838196286472, 0.054641909814323604, 0.17984084880636605, 0.0779840848806366, 0.06578249336870026, 0.06153846153846154, 0.05994694960212202, 0.05623342175066313, 0.057294429708222815, 0.05623342175066313, 0.057294429708222815, 0.054641909814323604, 0.296551724137931, 0.5283819628647215, 0.9124668435013262, 0.9458885941644563, 0.8201591511936339, 0.42758620689655175, 0.23183023872679046, 0.09283819628647215, 0.08381962864721486, 0.058355437665782495, 0.04880636604774536, 0.04562334217506631, 0.042440318302387266, 0.042440318302387266, 0.041379310344827586, 0.041379310344827586, 0.04190981432360743, 0.041379310344827586, 0.041379310344827586, 0.04084880636604774, 0.040318302387267906, 0.040318302387267906, 0.04084880636604774, 0.040318302387267906, 0.03978779840848806, 0.03978779840848806, 0.03978779840848806, 0.040318302387267906, 0.039257294429708225, 0.08222811671087533, 0.052519893899204244, 0.04297082228116711, 0.052519893899204244, 0.18408488063660478, 0.7198938992042441, 0.8806366047745358, 0.9204244031830239, 0.7607427055702918, 0.6021220159151194, 0.08753315649867374, 0.030238726790450927, 0.028647214854111407, 0.028116710875331564, 0.027055702917771884, 0.027055702917771884, 0.027055702917771884, 0.027055702917771884, 0.027055702917771884, 0.026525198938992044, 0.053580901856763924, 0.026525198938992044, 0.027055702917771884, 0.026525198938992044, 0.027055702917771884, 0.0259946949602122, 0.026525198938992044, 0.02546419098143236, 0.027055702917771884, 0.026525198938992044, 0.0259946949602122, 0.027586206896551724, 0.027055702917771884, 0.027055702917771884, 0.027055702917771884, 0.027055702917771884, 0.05623342175066313, 0.6519893899204244, 0.039257294429708225, 0.03183023872679045, 0.027586206896551724, 0.028116710875331564, 0.029177718832891247, 0.029177718832891247, 0.029177718832891247, 0.027586206896551724, 0.027055702917771884, 0.027586206896551724, 0.027586206896551724, 0.027586206896551724, 0.027586206896551724, 0.026525198938992044, 0.026525198938992044, 0.027586206896551724, 0.027586206896551724, 0.027586206896551724, 0.34748010610079577, 0.0960212201591512, 0.0610079575596817, 0.9023872679045093, 0.9384615384615385, 0.916710875331565, 0.880106100795756, 0.07745358090185676, 0.08169761273209548, 0.053580901856763924, 0.03660477453580902, 0.033421750663129975, 0.027055702917771884, 0.026525198938992044, 0.027055702917771884, 0.0259946949602122, 0.02546419098143236, 0.0259946949602122, 0.0259946949602122, 0.0259946949602122, 0.0259946949602122, 0.026525198938992044, 0.0259946949602122, 0.0259946949602122, 0.0259946949602122, 0.02546419098143236, 0.02546419098143236, 0.02546419098143236, 0.02546419098143236, 0.0259946949602122, 0.02493368700265252, 0.02493368700265252, 0.0259946949602122, 0.0259946949602122, 0.027055702917771884, 0.027055702917771884, 0.027586206896551724, 0.029708222811671087, 0.03129973474801061, 0.9352785145888595, 0.8509283819628647, 0.18992042440318302, 0.17984084880636605, 0.14164456233421752, 0.20954907161803712, 0.11671087533156499, 0.047214854111405836, 0.034482758620689655, 0.034482758620689655, 0.034482758620689655, 0.0350132625994695, 0.035543766578249335, 0.034482758620689655, 0.03395225464190981, 0.03395225464190981, 0.03395225464190981, 0.03395225464190981, 0.035543766578249335, 0.9013262599469496, 0.03713527851458886, 0.034482758620689655, 0.034482758620689655, 0.034482758620689655, 0.034482758620689655, 0.0350132625994695, 0.0350132625994695, 0.035543766578249335, 0.03607427055702918, 0.03660477453580902, 0.03660477453580902, 0.03660477453580902, 0.03660477453580902, 0.03819628647214854, 0.03819628647214854, 0.039257294429708225, 0.040318302387267906, 0.041379310344827586, 0.041379310344827586, 0.041379310344827586, 0.041379310344827586, 0.04190981432360743, 0.06949602122015915, 0.10928381962864721, 0.1389920424403183, 0.14748010610079576, 0.17188328912466844, 0.22175066312997346, 0.2949602122015915, 0.47745358090185674, 0.9474801061007958], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Ist1.gap.json b/pfam_gap_rates/Ist1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..5538f643c1ed5a79f77a33880ffa7c559bf16541
--- /dev/null
+++ b/pfam_gap_rates/Ist1.gap.json
@@ -0,0 +1 @@
+{"family": "Ist1", "n_seqs": 640, "length": 169, "gap_rates": [0.3109375, 0.253125, 0.2125, 0.1921875, 0.1796875, 0.15, 0.15, 0.14375, 0.140625, 0.1375, 0.1359375, 0.134375, 0.13125, 0.13125, 0.1296875, 0.1265625, 0.1265625, 0.1265625, 0.125, 0.121875, 0.1140625, 0.1140625, 0.1140625, 0.1109375, 0.103125, 0.103125, 0.103125, 0.103125, 0.1, 0.1, 0.0984375, 0.096875, 0.0953125, 0.0953125, 0.090625, 0.090625, 0.0921875, 0.0890625, 0.0890625, 0.0875, 0.0875, 0.0859375, 0.0859375, 0.08125, 0.0796875, 0.08125, 0.08125, 0.08125, 0.0796875, 0.08125, 0.084375, 0.084375, 0.0859375, 0.0796875, 0.075, 0.0734375, 0.0734375, 0.0734375, 0.0734375, 0.0734375, 0.0734375, 0.0765625, 0.0765625, 0.0734375, 0.0734375, 0.075, 0.075, 0.0765625, 0.0765625, 0.0765625, 0.0765625, 0.0734375, 0.0703125, 0.0703125, 0.0671875, 0.065625, 0.1375, 0.95, 0.0859375, 0.065625, 0.0578125, 0.94375, 0.9359375, 0.0578125, 0.059375, 0.0578125, 0.059375, 0.0609375, 0.059375, 0.059375, 0.059375, 0.0578125, 0.0578125, 0.0578125, 0.0578125, 0.0546875, 0.0546875, 0.0546875, 0.05625, 0.05625, 0.053125, 0.0546875, 0.825, 0.3015625, 0.0578125, 0.05625, 0.05625, 0.0515625, 0.05, 0.05, 0.0484375, 0.0484375, 0.0515625, 0.05, 0.0453125, 0.0453125, 0.0453125, 0.046875, 0.046875, 0.0484375, 0.046875, 0.046875, 0.046875, 0.046875, 0.159375, 0.1609375, 0.1578125, 0.1609375, 0.1625, 0.1578125, 0.1671875, 0.640625, 0.171875, 0.0890625, 0.134375, 0.0734375, 0.0671875, 0.065625, 0.0625, 0.065625, 0.065625, 0.0671875, 0.06875, 0.06875, 0.06875, 0.0703125, 0.0703125, 0.075, 0.0734375, 0.0734375, 0.0734375, 0.075, 0.075, 0.075, 0.0765625, 0.08125, 0.0765625, 0.08125, 0.0828125, 0.084375, 0.0859375, 0.0890625, 0.0890625, 0.090625, 0.096875, 0.10625, 0.1296875, 0.1625, 0.546875], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/JAB.gap.json b/pfam_gap_rates/JAB.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..bef536841983c482f4246893ca30cc3e73e10826
--- /dev/null
+++ b/pfam_gap_rates/JAB.gap.json
@@ -0,0 +1 @@
+{"family": "JAB", "n_seqs": 2671, "length": 128, "gap_rates": [0.8494945713216024, 0.49831523773867464, 0.2804193186072632, 0.177836016473231, 0.13290902283788844, 0.11943092474728566, 0.10857356795207787, 0.10445526020217147, 0.09996256083863722, 0.0950954698614751, 0.0909771621115687, 0.08873081242980158, 0.08236615499812804, 0.08311493822538375, 0.07038562336203669, 0.06963684013478098, 0.06140022463496818, 0.06027704979408461, 0.05990265818045676, 0.06102583302134032, 0.05915387495320105, 0.05765630849868963, 0.057281916885061776, 0.058030700112317486, 0.06888805690752527, 0.5080494196929989, 0.8075627105952826, 0.9195058030700113, 0.9449644327967054, 0.8697117184575065, 0.7315612130288282, 0.49232497192062896, 0.10969674279296143, 0.08648446274803444, 0.0355672032946462, 0.03519281168101834, 0.03481842006739049, 0.03444402845376263, 0.03332085361287907, 0.03294646199925122, 0.03332085361287907, 0.03332085361287907, 0.03294646199925122, 0.03369524522650692, 0.03257207038562336, 0.5833021340321977, 0.8921752152751778, 0.8086858854361663, 0.037813552976413325, 0.03332085361287907, 0.031074503931111944, 0.028828154249344814, 0.026956196181205542, 0.026581804567577687, 0.02620741295394983, 0.025833021340321977, 0.025084238113066266, 0.02283788843129914, 0.02358667165855485, 0.025084238113066266, 0.02545862972669412, 0.02470984649943841, 0.02545862972669412, 0.026956196181205542, 0.026956196181205542, 0.028079371022089104, 0.2373642830400599, 0.21789591913141146, 0.2025458629726694, 0.07787345563459379, 0.07150879820292025, 0.04792212654436541, 0.057281916885061776, 0.054286783976038935, 0.05990265818045676, 0.4219393485585923, 0.4092100336952452, 0.21490078622238862, 0.1886933732684388, 0.17933358292774243, 0.10707600149756645, 0.08236615499812804, 0.06813927368026956, 0.0471733433171097, 0.04829651815799326, 0.05765630849868963, 0.11718457506551853, 0.3916136278547361, 0.9299887682515912, 0.9359790340696369, 0.9243728940471734, 0.12542119056533133, 0.08910520404342943, 0.6297266941220516, 0.03444402845376263, 0.027704979408461252, 0.024335454885810556, 0.022463496817671284, 0.02208910520404343, 0.024335454885810556, 0.02545862972669412, 0.025833021340321977, 0.03219767877199551, 0.03369524522650692, 0.03631598652190191, 0.040434294271808315, 0.04380381879445901, 0.4324223137401722, 0.3616622987645077, 0.35192811681018343, 0.3455634593785099, 0.07001123174840884, 0.07338075627105953, 0.08236615499812804, 0.09172594533882442, 0.09397229502059154, 0.09734181954324223, 0.10220891052040434, 0.10782478472482217, 0.12092849120179708, 0.1355297641332834, 0.15162860351928117, 0.18420067390490452, 0.22426057656308498, 0.2968925496068888, 0.3811306626731561, 0.49756645451141895, 0.9030325720703857], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Jag_N.gap.json b/pfam_gap_rates/Jag_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b58a812ff91ecbe3c11977e35d027d0fef1ec922
--- /dev/null
+++ b/pfam_gap_rates/Jag_N.gap.json
@@ -0,0 +1 @@
+{"family": "Jag_N", "n_seqs": 748, "length": 51, "gap_rates": [0.5106951871657754, 0.12433155080213903, 0.034759358288770054, 0.014705882352941176, 0.009358288770053475, 0.008021390374331552, 0.004010695187165776, 0.004010695187165776, 0.004010695187165776, 0.004010695187165776, 0.004010695187165776, 0.004010695187165776, 0.004010695187165776, 0.00267379679144385, 0.00267379679144385, 0.00267379679144385, 0.001336898395721925, 0.001336898395721925, 0.0, 0.0, 0.0, 0.001336898395721925, 0.012032085561497326, 0.001336898395721925, 0.0, 0.0, 0.0, 0.0, 0.0, 0.00267379679144385, 0.00267379679144385, 0.0053475935828877, 0.012032085561497326, 0.05080213903743316, 0.04679144385026738, 0.029411764705882353, 0.03074866310160428, 0.058823529411764705, 0.05748663101604278, 0.5989304812834224, 0.03342245989304813, 0.022727272727272728, 0.04144385026737968, 0.045454545454545456, 0.03342245989304813, 0.03609625668449198, 0.0374331550802139, 0.04411764705882353, 0.06283422459893048, 0.18716577540106952, 0.7713903743315508], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/KH_1.gap.json b/pfam_gap_rates/KH_1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..be1fd0362a8ee191ad4f16dca05d06d430615b8e
--- /dev/null
+++ b/pfam_gap_rates/KH_1.gap.json
@@ -0,0 +1 @@
+{"family": "KH_1", "n_seqs": 5000, "length": 79, "gap_rates": [0.8634, 0.5026, 0.2396, 0.1396, 0.1094, 0.098, 0.0926, 0.077, 0.0472, 0.902, 0.0342, 0.0204, 0.0138, 0.0088, 0.007, 0.0066, 0.0068, 0.0052, 0.0044, 0.0024, 0.0022, 0.0042, 0.001, 0.0008, 0.0006, 0.0002, 0.0, 0.0004, 0.019, 0.0024, 0.0026, 0.0026, 0.0036, 0.0042, 0.0046, 0.0238, 0.0132, 0.4728, 0.7292, 0.2648, 0.2936, 0.365, 0.5462, 0.5638, 0.7788, 0.8648, 0.9144, 0.9314, 0.943, 0.9394, 0.9234, 0.8958, 0.8272, 0.6312, 0.465, 0.1812, 0.0916, 0.0652, 0.0616, 0.0612, 0.0652, 0.0702, 0.0788, 0.0832, 0.6728, 0.097, 0.1044, 0.1148, 0.1408, 0.1344, 0.1408, 0.1466, 0.1538, 0.1676, 0.1918, 0.2098, 0.247, 0.4182, 0.8806], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/KH_4.gap.json b/pfam_gap_rates/KH_4.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..2e25545e23a5dc211f3498b18deda226d4cc4939
--- /dev/null
+++ b/pfam_gap_rates/KH_4.gap.json
@@ -0,0 +1 @@
+{"family": "KH_4", "n_seqs": 2279, "length": 78, "gap_rates": [0.5971917507678807, 0.3527863097849934, 0.23650724001755155, 0.1737604212373848, 0.11803422553751645, 0.08161474330846863, 0.06186924089512944, 0.051777095217200524, 0.0434401053093462, 0.0434401053093462, 0.040807371654234315, 0.05440982887231242, 0.19262834576568671, 0.08995173321632295, 0.04387889425186485, 0.03992979376919702, 0.9337428696796841, 0.025449758666081616, 0.020623080298376482, 0.017112768758227294, 0.016235190873189996, 0.01491882404563405, 0.017112768758227294, 0.02106186924089513, 0.9398859148749451, 0.8587099605089952, 0.08995173321632295, 0.06669591926283458, 0.03729706011408512, 0.02369460289600702, 0.007020623080298377, 0.005265467310223783, 0.0035103115401491883, 0.0026327336551118913, 0.0013163668275559457, 0.00043878894251864854, 0.0008775778850372971, 0.011408512505484861, 0.0013163668275559457, 0.0008775778850372971, 0.0008775778850372971, 0.0, 0.00043878894251864854, 0.00043878894251864854, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0008775778850372971, 0.0008775778850372971, 0.0008775778850372971, 0.0008775778850372971, 0.0008775778850372971, 0.0008775778850372971, 0.002193944712593243, 0.004387889425186486, 0.00614304519526108, 0.017112768758227294, 0.04168494953927161, 0.060114085125054846, 0.07985958753839403, 0.10179903466432647, 0.11584028082492322, 0.9144361562088635, 0.14436156208863538, 0.15884159719175076, 0.9455901711276876, 0.19789381307591047, 0.23826239578762615, 0.3418165862220272, 0.48705572619569987], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/K_trans.gap.json b/pfam_gap_rates/K_trans.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..9ebbdc2b725d353cccfc5714332eb432d649d3a4
--- /dev/null
+++ b/pfam_gap_rates/K_trans.gap.json
@@ -0,0 +1 @@
+{"family": "K_trans", "n_seqs": 1418, "length": 611, "gap_rates": [0.8222849083215797, 0.22073342736248236, 0.20380818053596614, 0.2009873060648801, 0.2002820874471086, 0.2002820874471086, 0.19887165021156558, 0.19887165021156558, 0.19887165021156558, 0.19887165021156558, 0.19816643159379407, 0.19605077574047955, 0.19605077574047955, 0.19464033850493653, 0.19393511988716503, 0.19464033850493653, 0.19393511988716503, 0.19393511988716503, 0.19393511988716503, 0.19322990126939352, 0.19322990126939352, 0.19322990126939352, 0.19322990126939352, 0.19322990126939352, 0.8610719322990127, 0.5952045133991537, 0.5310296191819464, 0.45627644569816644, 0.2616361071932299, 0.1918194640338505, 0.18970380818053598, 0.18970380818053598, 0.18688293370944992, 0.1854724964739069, 0.1861777150916784, 0.1861777150916784, 0.1854724964739069, 0.1854724964739069, 0.1854724964739069, 0.18758815232722145, 0.18758815232722145, 0.18758815232722145, 0.18688293370944992, 0.1861777150916784, 0.1861777150916784, 0.18688293370944992, 0.18970380818053598, 0.18970380818053598, 0.18829337094499296, 0.18758815232722145, 0.18688293370944992, 0.1847672778561354, 0.1847672778561354, 0.18335684062059238, 0.18194640338504936, 0.18194640338504936, 0.18194640338504936, 0.18124118476727785, 0.18194640338504936, 0.18194640338504936, 0.18265162200282087, 0.18194640338504936, 0.18124118476727785, 0.18124118476727785, 0.18124118476727785, 0.18124118476727785, 0.18194640338504936, 0.18053596614950634, 0.17842031029619182, 0.17983074753173484, 0.18194640338504936, 0.18053596614950634, 0.18124118476727785, 0.18194640338504936, 0.18194640338504936, 0.18194640338504936, 0.18194640338504936, 0.18194640338504936, 0.18124118476727785, 0.18124118476727785, 0.5599435825105783, 0.5648801128349789, 0.5648801128349789, 0.5648801128349789, 0.5662905500705219, 0.5684062059238364, 0.5691114245416079, 0.5705218617771509, 0.573342736248237, 0.5754583921015515, 0.5768688293370945, 0.580394922425952, 0.5839210155148096, 0.5909732016925247, 0.6001410437235543, 0.6043723554301833, 0.6170662905500706, 0.6833568406205924, 0.9188998589562765, 0.7813822284908322, 0.650916784203103, 0.6071932299012694, 0.6008462623413258, 0.5959097320169252, 0.5846262341325811, 0.5811001410437235, 0.5782792665726375, 0.5768688293370945, 0.5740479548660085, 0.5705218617771509, 0.5698166431593794, 0.5691114245416079, 0.5677009873060649, 0.5655853314527504, 0.5648801128349789, 0.5648801128349789, 0.5641748942172073, 0.5557122708039492, 0.3723554301833568, 0.4132581100141044, 0.36741889985895626, 0.33779971791255287, 0.3335684062059238, 0.3152327221438646, 0.2306064880112835, 0.23272214386459802, 0.23624823695345556, 0.23342736248236953, 0.22708039492242596, 0.192524682651622, 0.9301833568406206, 0.9386459802538787, 0.9393511988716502, 0.9414668547249647, 0.9421720733427362, 0.9400564174894217, 0.9393511988716502, 0.9358251057827927, 0.9273624823695346, 0.3342736248236953, 0.18124118476727785, 0.18124118476727785, 0.18124118476727785, 0.18194640338504936, 0.18194640338504936, 0.18053596614950634, 0.18053596614950634, 0.17983074753173484, 0.17983074753173484, 0.17207334273624825, 0.17207334273624825, 0.17207334273624825, 0.17277856135401976, 0.17418899858956277, 0.17489421720733428, 0.17418899858956277, 0.17418899858956277, 0.17489421720733428, 0.17489421720733428, 0.17348377997179126, 0.17066290550070523, 0.16995768688293372, 0.1763046544428773, 0.1763046544428773, 0.1763046544428773, 0.1763046544428773, 0.1763046544428773, 0.1770098730606488, 0.1763046544428773, 0.1755994358251058, 0.18053596614950634, 0.22214386459802538, 0.20451339915373765, 0.20380818053596614, 0.19605077574047955, 0.18899858956276447, 0.18688293370944992, 0.1755994358251058, 0.8519040902679831, 0.918194640338505, 0.9421720733427362, 0.9111424541607899, 0.5148095909732017, 0.21156558533145275, 0.2073342736248237, 0.17489421720733428, 0.17136812411847674, 0.16995768688293372, 0.16995768688293372, 0.16995768688293372, 0.16995768688293372, 0.16995768688293372, 0.17066290550070523, 0.17066290550070523, 0.17066290550070523, 0.17066290550070523, 0.17066290550070523, 0.17066290550070523, 0.16995768688293372, 0.1692524682651622, 0.1692524682651622, 0.16854724964739068, 0.16784203102961917, 0.16784203102961917, 0.16713681241184766, 0.16784203102961917, 0.16713681241184766, 0.16784203102961917, 0.16713681241184766, 0.16713681241184766, 0.16502115655853314, 0.16502115655853314, 0.16572637517630465, 0.16572637517630465, 0.16572637517630465, 0.16431593794076163, 0.16290550070521861, 0.1622002820874471, 0.1622002820874471, 0.1622002820874471, 0.1622002820874471, 0.1614950634696756, 0.1614950634696756, 0.1614950634696756, 0.16008462623413258, 0.15937940761636107, 0.15937940761636107, 0.1607898448519041, 0.1614950634696756, 0.1614950634696756, 0.1614950634696756, 0.1614950634696756, 0.16290550070521861, 0.16290550070521861, 0.5606488011283498, 0.16361071932299012, 0.16361071932299012, 0.16361071932299012, 0.16361071932299012, 0.16361071932299012, 0.16361071932299012, 0.16361071932299012, 0.16361071932299012, 0.16361071932299012, 0.16502115655853314, 0.16502115655853314, 0.16361071932299012, 0.16290550070521861, 0.16290550070521861, 0.16290550070521861, 0.16361071932299012, 0.16361071932299012, 0.16290550070521861, 0.9351198871650211, 0.18124118476727785, 0.1763046544428773, 0.1755994358251058, 0.20944992947813823, 0.17066290550070523, 0.16290550070521861, 0.16290550070521861, 0.1614950634696756, 0.1614950634696756, 0.1614950634696756, 0.16290550070521861, 0.16290550070521861, 0.16361071932299012, 0.16502115655853314, 0.16431593794076163, 0.1622002820874471, 0.15867418899858957, 0.15726375176304655, 0.16008462623413258, 0.1607898448519041, 0.16008462623413258, 0.15514809590973203, 0.15585331452750353, 0.15585331452750353, 0.15655853314527504, 0.15655853314527504, 0.15655853314527504, 0.15514809590973203, 0.15514809590973203, 0.15444287729196052, 0.153737658674189, 0.15444287729196052, 0.153737658674189, 0.15162200282087446, 0.14880112834978843, 0.15021156558533144, 0.15162200282087446, 0.15162200282087446, 0.15162200282087446, 0.15091678420310295, 0.27221438645980256, 0.15162200282087446, 0.152327221438646, 0.15162200282087446, 0.15162200282087446, 0.15162200282087446, 0.15162200282087446, 0.152327221438646, 0.15162200282087446, 0.15162200282087446, 0.14880112834978843, 0.14809590973201692, 0.14809590973201692, 0.1473906911142454, 0.14880112834978843, 0.14880112834978843, 0.14809590973201692, 0.14880112834978843, 0.14880112834978843, 0.14880112834978843, 0.14950634696755993, 0.9294781382228491, 0.9005641748942173, 0.16643159379407615, 0.16008462623413258, 0.15444287729196052, 0.8533145275035261, 0.9111424541607899, 0.9337094499294781, 0.9435825105782792, 0.9245416078984485, 0.8695345557122708, 0.8314527503526093, 0.1530324400564175, 0.1530324400564175, 0.1530324400564175, 0.15091678420310295, 0.15091678420310295, 0.15091678420310295, 0.15021156558533144, 0.14880112834978843, 0.14809590973201692, 0.14950634696755993, 0.9456981664315938, 0.15514809590973203, 0.15444287729196052, 0.15726375176304655, 0.15726375176304655, 0.15937940761636107, 0.15867418899858957, 0.15796897038081806, 0.15937940761636107, 0.15937940761636107, 0.15796897038081806, 0.15867418899858957, 0.15726375176304655, 0.15726375176304655, 0.15726375176304655, 0.15655853314527504, 0.15514809590973203, 0.15444287729196052, 0.15444287729196052, 0.15444287729196052, 0.15514809590973203, 0.153737658674189, 0.1530324400564175, 0.153737658674189, 0.1530324400564175, 0.1530324400564175, 0.1530324400564175, 0.1530324400564175, 0.15162200282087446, 0.152327221438646, 0.152327221438646, 0.152327221438646, 0.15162200282087446, 0.14950634696755993, 0.15091678420310295, 0.15091678420310295, 0.15091678420310295, 0.15091678420310295, 0.15021156558533144, 0.15091678420310295, 0.15091678420310295, 0.15091678420310295, 0.15021156558533144, 0.15021156558533144, 0.15021156558533144, 0.14950634696755993, 0.14950634696755993, 0.14950634696755993, 0.14950634696755993, 0.15091678420310295, 0.14950634696755993, 0.2552891396332863, 0.15021156558533144, 0.14950634696755993, 0.14950634696755993, 0.15021156558533144, 0.14950634696755993, 0.14950634696755993, 0.15021156558533144, 0.15091678420310295, 0.15091678420310295, 0.15091678420310295, 0.15162200282087446, 0.15021156558533144, 0.14527503526093088, 0.14527503526093088, 0.14527503526093088, 0.14527503526093088, 0.14456981664315938, 0.1459802538787024, 0.14527503526093088, 0.1459802538787024, 0.1459802538787024, 0.1459802538787024, 0.14527503526093088, 0.14527503526093088, 0.1459802538787024, 0.1459802538787024, 0.1459802538787024, 0.1459802538787024, 0.1459802538787024, 0.1466854724964739, 0.1466854724964739, 0.1473906911142454, 0.1459802538787024, 0.14245416078984485, 0.1473906911142454, 0.14880112834978843, 0.14809590973201692, 0.14950634696755993, 0.14950634696755993, 0.15021156558533144, 0.1473906911142454, 0.14809590973201692, 0.14809590973201692, 0.14880112834978843, 0.14880112834978843, 0.14880112834978843, 0.14880112834978843, 0.1466854724964739, 0.14880112834978843, 0.14880112834978843, 0.1473906911142454, 0.1466854724964739, 0.1473906911142454, 0.15655853314527504, 0.1607898448519041, 0.24118476727785615, 0.1763046544428773, 0.16361071932299012, 0.153737658674189, 0.1473906911142454, 0.1459802538787024, 0.1459802538787024, 0.1466854724964739, 0.1473906911142454, 0.14880112834978843, 0.1466854724964739, 0.1473906911142454, 0.14809590973201692, 0.14880112834978843, 0.14950634696755993, 0.14880112834978843, 0.14809590973201692, 0.15021156558533144, 0.15021156558533144, 0.14950634696755993, 0.15091678420310295, 0.15091678420310295, 0.15091678420310295, 0.15091678420310295, 0.15091678420310295, 0.15091678420310295, 0.14950634696755993, 0.14809590973201692, 0.14809590973201692, 0.1473906911142454, 0.14880112834978843, 0.14809590973201692, 0.14950634696755993, 0.1473906911142454, 0.1473906911142454, 0.1466854724964739, 0.1473906911142454, 0.14527503526093088, 0.1459802538787024, 0.1459802538787024, 0.14527503526093088, 0.1459802538787024, 0.1459802538787024, 0.1459802538787024, 0.14809590973201692, 0.14809590973201692, 0.14809590973201692, 0.14880112834978843, 0.14880112834978843, 0.14880112834978843, 0.14880112834978843, 0.14809590973201692, 0.14809590973201692, 0.1473906911142454, 0.14809590973201692, 0.15021156558533144, 0.15091678420310295, 0.15021156558533144, 0.15162200282087446, 0.153737658674189, 0.15514809590973203, 0.9464033850493653, 0.9421720733427362, 0.16008462623413258, 0.18124118476727785, 0.1755994358251058, 0.16713681241184766, 0.16502115655853314, 0.16502115655853314, 0.9456981664315938, 0.9400564174894217, 0.16502115655853314, 0.16431593794076163, 0.16502115655853314, 0.16643159379407615, 0.16784203102961917, 0.16713681241184766, 0.16854724964739068, 0.1692524682651622, 0.1692524682651622, 0.17136812411847674, 0.17348377997179126, 0.9351198871650211, 0.22566995768688294, 0.19675599435825106, 0.17418899858956277, 0.16431593794076163, 0.9400564174894217, 0.9492242595204513, 0.9421720733427362, 0.9386459802538787, 0.16502115655853314, 0.16502115655853314, 0.16502115655853314, 0.16361071932299012, 0.16361071932299012, 0.16361071932299012, 0.16361071932299012, 0.16431593794076163, 0.16572637517630465, 0.16572637517630465, 0.16643159379407615, 0.16643159379407615, 0.1861777150916784, 0.16995768688293372, 0.16713681241184766, 0.16643159379407615, 0.16854724964739068, 0.16502115655853314, 0.16572637517630465, 0.16572637517630465, 0.16643159379407615, 0.16713681241184766, 0.16784203102961917, 0.16713681241184766, 0.16643159379407615, 0.16572637517630465, 0.16643159379407615, 0.16572637517630465, 0.16572637517630465, 0.16572637517630465, 0.16572637517630465, 0.16572637517630465, 0.16572637517630465, 0.16572637517630465, 0.16713681241184766, 0.16713681241184766, 0.16784203102961917, 0.16784203102961917, 0.16854724964739068, 0.16854724964739068, 0.16854724964739068, 0.1692524682651622, 0.17418899858956277, 0.17418899858956277, 0.17489421720733428, 0.17489421720733428, 0.1763046544428773, 0.17983074753173484, 0.1777150916784203, 0.17489421720733428, 0.17348377997179126, 0.17418899858956277, 0.17489421720733428, 0.17418899858956277, 0.17348377997179126, 0.17348377997179126, 0.17348377997179126, 0.1755994358251058, 0.1755994358251058, 0.4153737658674189, 0.6248236953455572, 0.5881523272214386, 0.1763046544428773, 0.1755994358251058, 0.1755994358251058, 0.1763046544428773, 0.1763046544428773, 0.1770098730606488, 0.17912552891396333, 0.18053596614950634, 0.18194640338504936, 0.18194640338504936, 0.18335684062059238, 0.18406205923836388, 0.1847672778561354, 0.34062059238363895], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Kei1.gap.json b/pfam_gap_rates/Kei1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..68eed669f06d09d6bfcba7ca388afbc907c9c63e
--- /dev/null
+++ b/pfam_gap_rates/Kei1.gap.json
@@ -0,0 +1 @@
+{"family": "Kei1", "n_seqs": 127, "length": 238, "gap_rates": [0.29133858267716534, 0.1968503937007874, 0.1889763779527559, 0.18110236220472442, 0.18110236220472442, 0.15748031496062992, 0.13385826771653545, 0.13385826771653545, 0.13385826771653545, 0.11811023622047244, 0.11811023622047244, 0.11811023622047244, 0.11023622047244094, 0.10236220472440945, 0.10236220472440945, 0.10236220472440945, 0.10236220472440945, 0.10236220472440945, 0.09448818897637795, 0.09448818897637795, 0.09448818897637795, 0.09448818897637795, 0.09448818897637795, 0.08661417322834646, 0.08661417322834646, 0.08661417322834646, 0.08661417322834646, 0.08661417322834646, 0.08661417322834646, 0.08661417322834646, 0.08661417322834646, 0.08661417322834646, 0.08661417322834646, 0.08661417322834646, 0.08661417322834646, 0.08661417322834646, 0.25196850393700787, 0.2440944881889764, 0.10236220472440945, 0.07874015748031496, 0.07874015748031496, 0.07874015748031496, 0.07874015748031496, 0.07874015748031496, 0.07874015748031496, 0.07086614173228346, 0.07086614173228346, 0.07086614173228346, 0.07086614173228346, 0.07086614173228346, 0.07086614173228346, 0.06299212598425197, 0.06299212598425197, 0.06299212598425197, 0.06299212598425197, 0.06299212598425197, 0.06299212598425197, 0.06299212598425197, 0.06299212598425197, 0.06299212598425197, 0.06299212598425197, 0.06299212598425197, 0.05511811023622047, 0.06299212598425197, 0.06299212598425197, 0.06299212598425197, 0.06299212598425197, 0.06299212598425197, 0.12598425196850394, 0.937007874015748, 0.06299212598425197, 0.06299212598425197, 0.06299212598425197, 0.06299212598425197, 0.06299212598425197, 0.06299212598425197, 0.889763779527559, 0.06299212598425197, 0.06299212598425197, 0.06299212598425197, 0.06299212598425197, 0.06299212598425197, 0.06299212598425197, 0.06299212598425197, 0.05511811023622047, 0.05511811023622047, 0.05511811023622047, 0.05511811023622047, 0.05511811023622047, 0.05511811023622047, 0.05511811023622047, 0.05511811023622047, 0.05511811023622047, 0.05511811023622047, 0.05511811023622047, 0.05511811023622047, 0.05511811023622047, 0.05511811023622047, 0.05511811023622047, 0.05511811023622047, 0.07874015748031496, 0.12598425196850394, 0.11811023622047244, 0.10236220472440945, 0.10236220472440945, 0.7716535433070866, 0.8582677165354331, 0.9291338582677166, 0.937007874015748, 0.8818897637795275, 0.7795275590551181, 0.7480314960629921, 0.15748031496062992, 0.16535433070866143, 0.14173228346456693, 0.11023622047244094, 0.48031496062992124, 0.15748031496062992, 0.12598425196850394, 0.09448818897637795, 0.09448818897637795, 0.10236220472440945, 0.10236220472440945, 0.09448818897637795, 0.09448818897637795, 0.10236220472440945, 0.11023622047244094, 0.09448818897637795, 0.6614173228346457, 0.6771653543307087, 0.6850393700787402, 0.7007874015748031, 0.7086614173228346, 0.7086614173228346, 0.7244094488188977, 0.7480314960629921, 0.7952755905511811, 0.8188976377952756, 0.8661417322834646, 0.9212598425196851, 0.9448818897637795, 0.9448818897637795, 0.937007874015748, 0.8661417322834646, 0.8346456692913385, 0.8110236220472441, 0.7716535433070866, 0.7322834645669292, 0.7244094488188977, 0.7086614173228346, 0.7007874015748031, 0.6929133858267716, 0.6850393700787402, 0.6692913385826772, 0.6614173228346457, 0.5275590551181102, 0.5905511811023622, 0.5275590551181102, 0.5354330708661418, 0.48031496062992124, 0.3937007874015748, 0.3228346456692913, 0.2677165354330709, 0.30708661417322836, 0.33070866141732286, 0.3228346456692913, 0.28346456692913385, 0.2677165354330709, 0.30708661417322836, 0.31496062992125984, 0.29133858267716534, 0.2755905511811024, 0.31496062992125984, 0.29133858267716534, 0.2283464566929134, 0.7637795275590551, 0.5905511811023622, 0.15748031496062992, 0.13385826771653545, 0.07086614173228346, 0.9291338582677166, 0.937007874015748, 0.937007874015748, 0.937007874015748, 0.937007874015748, 0.937007874015748, 0.937007874015748, 0.9448818897637795, 0.9448818897637795, 0.9448818897637795, 0.937007874015748, 0.937007874015748, 0.937007874015748, 0.937007874015748, 0.937007874015748, 0.937007874015748, 0.9291338582677166, 0.9291338582677166, 0.06299212598425197, 0.05511811023622047, 0.03937007874015748, 0.03937007874015748, 0.03937007874015748, 0.031496062992125984, 0.031496062992125984, 0.031496062992125984, 0.031496062992125984, 0.031496062992125984, 0.031496062992125984, 0.031496062992125984, 0.031496062992125984, 0.031496062992125984, 0.031496062992125984, 0.031496062992125984, 0.031496062992125984, 0.031496062992125984, 0.031496062992125984, 0.031496062992125984, 0.031496062992125984, 0.031496062992125984, 0.031496062992125984, 0.031496062992125984, 0.031496062992125984, 0.031496062992125984, 0.031496062992125984, 0.031496062992125984, 0.031496062992125984, 0.031496062992125984, 0.031496062992125984, 0.031496062992125984, 0.031496062992125984, 0.031496062992125984, 0.031496062992125984, 0.031496062992125984, 0.05511811023622047, 0.09448818897637795, 0.25196850393700787, 0.7086614173228346], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Kelch_6.gap.json b/pfam_gap_rates/Kelch_6.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..73e7da5a9de0fe7028833a46730cacaf7da832ca
--- /dev/null
+++ b/pfam_gap_rates/Kelch_6.gap.json
@@ -0,0 +1 @@
+{"family": "Kelch_6", "n_seqs": 1255, "length": 55, "gap_rates": [0.7641434262948207, 0.42151394422310756, 0.29800796812749003, 0.1609561752988048, 0.08685258964143426, 0.055776892430278883, 0.034262948207171316, 0.02390438247011952, 0.0199203187250996, 0.009561752988047808, 0.004780876494023904, 0.0015936254980079682, 0.0007968127490039841, 0.0007968127490039841, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0031872509960159364, 0.008764940239043825, 0.3896414342629482, 0.7378486055776893, 0.8645418326693227, 0.9179282868525896, 0.8055776892430279, 0.5768924302788845, 0.14422310756972112, 0.10358565737051793, 0.09482071713147411, 0.05338645418326693, 0.0, 0.005577689243027889, 0.015139442231075698, 0.0, 0.0, 0.0, 0.0, 0.0, 0.002390438247011952, 0.0031872509960159364, 0.002390438247011952, 0.002390438247011952, 0.007171314741035857, 0.024701195219123506, 0.05976095617529881, 0.10438247011952191, 0.200796812749004, 0.30199203187250995, 0.4199203187250996, 0.4605577689243028, 0.5649402390438247, 0.6541832669322709, 0.7521912350597609], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Keratin_B2_2.gap.json b/pfam_gap_rates/Keratin_B2_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..54aaab0e73212310ba2a909f6d047fea4131bc72
--- /dev/null
+++ b/pfam_gap_rates/Keratin_B2_2.gap.json
@@ -0,0 +1 @@
+{"family": "Keratin_B2_2", "n_seqs": 591, "length": 48, "gap_rates": [0.43993231810490696, 0.23688663282571912, 0.19289340101522842, 0.14720812182741116, 0.15228426395939088, 0.0829103214890017, 0.0676818950930626, 0.07614213197969544, 0.05245346869712352, 0.043993231810490696, 0.018612521150592216, 0.011844331641285956, 0.011844331641285956, 0.00676818950930626, 0.06937394247038917, 0.001692047377326565, 0.00338409475465313, 0.00338409475465313, 0.001692047377326565, 0.0, 0.0727580372250423, 0.9424703891708968, 0.9458544839255499, 0.9407783417935702, 0.0, 0.0, 0.0, 0.01015228426395939, 0.0, 0.0, 0.0, 0.0, 0.018612521150592216, 0.021996615905245348, 0.011844331641285956, 0.00676818950930626, 0.01353637901861252, 0.018612521150592216, 0.02030456852791878, 0.03722504230118443, 0.047377326565143825, 0.05922165820642978, 0.09306260575296109, 0.1065989847715736, 0.1844331641285956, 0.311336717428088, 0.3824027072758037, 0.5752961082910322], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/L27.gap.json b/pfam_gap_rates/L27.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..6767449b7709fb2d90891a367413edd878f0d501
--- /dev/null
+++ b/pfam_gap_rates/L27.gap.json
@@ -0,0 +1 @@
+{"family": "L27", "n_seqs": 424, "length": 55, "gap_rates": [0.5306603773584906, 0.3632075471698113, 0.25707547169811323, 0.1957547169811321, 0.16745283018867924, 0.14150943396226415, 0.1179245283018868, 0.11084905660377359, 0.10141509433962265, 0.08962264150943396, 0.08254716981132075, 0.08018867924528301, 0.07547169811320754, 0.06839622641509434, 0.06839622641509434, 0.0589622641509434, 0.05188679245283019, 0.04481132075471698, 0.9363207547169812, 0.49764150943396224, 0.18160377358490565, 0.025943396226415096, 0.01179245283018868, 0.007075471698113208, 0.0047169811320754715, 0.0047169811320754715, 0.0047169811320754715, 0.0047169811320754715, 0.0047169811320754715, 0.0047169811320754715, 0.0047169811320754715, 0.0047169811320754715, 0.007075471698113208, 0.007075471698113208, 0.0047169811320754715, 0.0047169811320754715, 0.009433962264150943, 0.01179245283018868, 0.01179245283018868, 0.018867924528301886, 0.025943396226415096, 0.03537735849056604, 0.03773584905660377, 0.04009433962264151, 0.04481132075471698, 0.05188679245283019, 0.0589622641509434, 0.08018867924528301, 0.09198113207547169, 0.12735849056603774, 0.19103773584905662, 0.21933962264150944, 0.29245283018867924, 0.37735849056603776, 0.6226415094339622], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/LAB_N.gap.json b/pfam_gap_rates/LAB_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..1c1903d2f7ff08e9a61cffaed2f2286ed9fcd862
--- /dev/null
+++ b/pfam_gap_rates/LAB_N.gap.json
@@ -0,0 +1 @@
+{"family": "LAB_N", "n_seqs": 209, "length": 72, "gap_rates": [0.23923444976076555, 0.009569377990430622, 0.009569377990430622, 0.009569377990430622, 0.009569377990430622, 0.009569377990430622, 0.009569377990430622, 0.009569377990430622, 0.009569377990430622, 0.009569377990430622, 0.009569377990430622, 0.009569377990430622, 0.009569377990430622, 0.009569377990430622, 0.009569377990430622, 0.009569377990430622, 0.009569377990430622, 0.009569377990430622, 0.009569377990430622, 0.009569377990430622, 0.009569377990430622, 0.009569377990430622, 0.009569377990430622, 0.009569377990430622, 0.009569377990430622, 0.009569377990430622, 0.009569377990430622, 0.009569377990430622, 0.009569377990430622, 0.009569377990430622, 0.009569377990430622, 0.009569377990430622, 0.009569377990430622, 0.004784688995215311, 0.004784688995215311, 0.004784688995215311, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.9234449760765551, 0.0, 0.0, 0.0, 0.0, 0.0, 0.004784688995215311, 0.004784688995215311, 0.004784688995215311, 0.004784688995215311, 0.004784688995215311, 0.004784688995215311, 0.004784688995215311, 0.004784688995215311, 0.004784688995215311, 0.004784688995215311, 0.004784688995215311, 0.004784688995215311, 0.004784688995215311, 0.004784688995215311, 0.004784688995215311, 0.014354066985645933, 0.3923444976076555], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/LAGLIDADG_2.gap.json b/pfam_gap_rates/LAGLIDADG_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..bb251795d90b7eac7d26e96df3cf5210fd8948f1
--- /dev/null
+++ b/pfam_gap_rates/LAGLIDADG_2.gap.json
@@ -0,0 +1 @@
+{"family": "LAGLIDADG_2", "n_seqs": 170, "length": 204, "gap_rates": [0.5705882352941176, 0.21764705882352942, 0.16470588235294117, 0.12352941176470589, 0.12352941176470589, 0.12352941176470589, 0.11764705882352941, 0.11176470588235295, 0.10588235294117647, 0.1, 0.1, 0.1, 0.1, 0.1, 0.7411764705882353, 0.9235294117647059, 0.6588235294117647, 0.3352941176470588, 0.24705882352941178, 0.17058823529411765, 0.12941176470588237, 0.12352941176470589, 0.10588235294117647, 0.08235294117647059, 0.08235294117647059, 0.08235294117647059, 0.07647058823529412, 0.08235294117647059, 0.08235294117647059, 0.07647058823529412, 0.08235294117647059, 0.07647058823529412, 0.7764705882352941, 0.08823529411764706, 0.07647058823529412, 0.06470588235294118, 0.06470588235294118, 0.06470588235294118, 0.06470588235294118, 0.06470588235294118, 0.06470588235294118, 0.06470588235294118, 0.06470588235294118, 0.058823529411764705, 0.052941176470588235, 0.052941176470588235, 0.052941176470588235, 0.052941176470588235, 0.052941176470588235, 0.058823529411764705, 0.06470588235294118, 0.06470588235294118, 0.06470588235294118, 0.06470588235294118, 0.052941176470588235, 0.052941176470588235, 0.052941176470588235, 0.052941176470588235, 0.1588235294117647, 0.21176470588235294, 0.3, 0.3, 0.5294117647058824, 0.5411764705882353, 0.5117647058823529, 0.4823529411764706, 0.6764705882352942, 0.8705882352941177, 0.9470588235294117, 0.7647058823529411, 0.6470588235294118, 0.13529411764705881, 0.11176470588235295, 0.08823529411764706, 0.08235294117647059, 0.07647058823529412, 0.041176470588235294, 0.03529411764705882, 0.03529411764705882, 0.03529411764705882, 0.03529411764705882, 0.03529411764705882, 0.03529411764705882, 0.03529411764705882, 0.03529411764705882, 0.03529411764705882, 0.041176470588235294, 0.03529411764705882, 0.041176470588235294, 0.041176470588235294, 0.03529411764705882, 0.03529411764705882, 0.03529411764705882, 0.03529411764705882, 0.029411764705882353, 0.029411764705882353, 0.9176470588235294, 0.9294117647058824, 0.9235294117647059, 0.788235294117647, 0.058823529411764705, 0.03529411764705882, 0.03529411764705882, 0.03529411764705882, 0.041176470588235294, 0.03529411764705882, 0.041176470588235294, 0.052941176470588235, 0.888235294117647, 0.047058823529411764, 0.07647058823529412, 0.12352941176470589, 0.1, 0.041176470588235294, 0.888235294117647, 0.041176470588235294, 0.047058823529411764, 0.047058823529411764, 0.047058823529411764, 0.047058823529411764, 0.047058823529411764, 0.047058823529411764, 0.047058823529411764, 0.047058823529411764, 0.041176470588235294, 0.041176470588235294, 0.041176470588235294, 0.041176470588235294, 0.9176470588235294, 0.9352941176470588, 0.9235294117647059, 0.9176470588235294, 0.047058823529411764, 0.08235294117647059, 0.08235294117647059, 0.07647058823529412, 0.07647058823529412, 0.2647058823529412, 0.7411764705882353, 0.7705882352941177, 0.8588235294117647, 0.888235294117647, 0.9176470588235294, 0.9235294117647059, 0.9176470588235294, 0.9176470588235294, 0.8705882352941177, 0.8470588235294118, 0.7647058823529411, 0.5235294117647059, 0.058823529411764705, 0.047058823529411764, 0.047058823529411764, 0.047058823529411764, 0.047058823529411764, 0.052941176470588235, 0.052941176470588235, 0.16470588235294117, 0.052941176470588235, 0.052941176470588235, 0.058823529411764705, 0.058823529411764705, 0.058823529411764705, 0.058823529411764705, 0.058823529411764705, 0.058823529411764705, 0.058823529411764705, 0.06470588235294118, 0.07058823529411765, 0.07647058823529412, 0.07647058823529412, 0.08823529411764706, 0.08235294117647059, 0.08823529411764706, 0.3058823529411765, 0.08823529411764706, 0.09411764705882353, 0.09411764705882353, 0.1, 0.1, 0.1, 0.1, 0.1, 0.10588235294117647, 0.12352941176470589, 0.12352941176470589, 0.1411764705882353, 0.6411764705882353, 0.9117647058823529, 0.9235294117647059, 0.7352941176470589, 0.17058823529411765, 0.17058823529411765, 0.17647058823529413, 0.17647058823529413, 0.17647058823529413, 0.19411764705882353, 0.21764705882352942, 0.22941176470588234, 0.24705882352941178, 0.28823529411764703, 0.3235294117647059, 0.4176470588235294, 0.5470588235294118], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/LAGLIDADG_3.gap.json b/pfam_gap_rates/LAGLIDADG_3.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..110c72ba2549c2d160ae9a386b2831d84b77ec87
--- /dev/null
+++ b/pfam_gap_rates/LAGLIDADG_3.gap.json
@@ -0,0 +1 @@
+{"family": "LAGLIDADG_3", "n_seqs": 580, "length": 118, "gap_rates": [0.7379310344827587, 0.27586206896551724, 0.06551724137931035, 0.03793103448275862, 0.02586206896551724, 0.008620689655172414, 0.008620689655172414, 0.008620689655172414, 0.008620689655172414, 0.008620689655172414, 0.005172413793103448, 0.005172413793103448, 0.005172413793103448, 0.008620689655172414, 0.008620689655172414, 0.9224137931034483, 0.005172413793103448, 0.005172413793103448, 0.010344827586206896, 0.17413793103448275, 0.496551724137931, 0.8275862068965517, 0.8706896551724138, 0.9241379310344827, 0.946551724137931, 0.8913793103448275, 0.8448275862068966, 0.7637931034482759, 0.38275862068965516, 0.36724137931034484, 0.15, 0.02413793103448276, 0.005172413793103448, 0.0017241379310344827, 0.0017241379310344827, 0.0034482758620689655, 0.0, 0.0, 0.0017241379310344827, 0.0017241379310344827, 0.0017241379310344827, 0.0, 0.0, 0.0, 0.0017241379310344827, 0.0017241379310344827, 0.0, 0.0, 0.0, 0.0017241379310344827, 0.9482758620689655, 0.0034482758620689655, 0.020689655172413793, 0.015517241379310345, 0.015517241379310345, 0.01206896551724138, 0.01206896551724138, 0.9362068965517242, 0.02413793103448276, 0.01896551724137931, 0.017241379310344827, 0.1810344827586207, 0.16379310344827586, 0.12586206896551724, 0.6948275862068966, 0.7793103448275862, 0.8551724137931035, 0.8982758620689655, 0.9224137931034483, 0.9379310344827586, 0.906896551724138, 0.8793103448275862, 0.8120689655172414, 0.7413793103448276, 0.6758620689655173, 0.13620689655172413, 0.1103448275862069, 0.7586206896551724, 0.8206896551724138, 0.846551724137931, 0.8603448275862069, 0.8706896551724138, 0.8879310344827587, 0.9, 0.9051724137931034, 0.9258620689655173, 0.906896551724138, 0.903448275862069, 0.8913793103448275, 0.8793103448275862, 0.8655172413793103, 0.8551724137931035, 0.8310344827586207, 0.8, 0.753448275862069, 0.1, 0.0896551724137931, 0.09137931034482759, 0.9448275862068966, 0.08793103448275862, 0.0896551724137931, 0.08448275862068966, 0.0896551724137931, 0.0896551724137931, 0.10517241379310345, 0.11896551724137931, 0.6086206896551725, 0.15172413793103448, 0.16379310344827586, 0.1879310344827586, 0.20862068965517241, 0.2396551724137931, 0.25517241379310346, 0.28793103448275864, 0.3258620689655172, 0.3586206896551724, 0.3931034482758621, 0.5362068965517242], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/LAGLIDADG_WhiA.gap.json b/pfam_gap_rates/LAGLIDADG_WhiA.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..782136fc8b741aca0d4fb14e0325f22dcc9f498f
--- /dev/null
+++ b/pfam_gap_rates/LAGLIDADG_WhiA.gap.json
@@ -0,0 +1 @@
+{"family": "LAGLIDADG_WhiA", "n_seqs": 886, "length": 93, "gap_rates": [0.15011286681715574, 0.0417607223476298, 0.029345372460496615, 0.016930022573363433, 0.016930022573363433, 0.01580135440180587, 0.014672686230248307, 0.014672686230248307, 0.014672686230248307, 0.014672686230248307, 0.014672686230248307, 0.014672686230248307, 0.014672686230248307, 0.013544018058690745, 0.013544018058690745, 0.013544018058690745, 0.024830699774266364, 0.016930022573363433, 0.01580135440180587, 0.014672686230248307, 0.6681715575620768, 0.014672686230248307, 0.011286681715575621, 0.011286681715575621, 0.011286681715575621, 0.010158013544018058, 0.009029345372460496, 0.007900677200902935, 0.009029345372460496, 0.010158013544018058, 0.007900677200902935, 0.009029345372460496, 0.010158013544018058, 0.007900677200902935, 0.007900677200902935, 0.007900677200902935, 0.007900677200902935, 0.007900677200902935, 0.011286681715575621, 0.010158013544018058, 0.010158013544018058, 0.010158013544018058, 0.009029345372460496, 0.009029345372460496, 0.009029345372460496, 0.010158013544018058, 0.009029345372460496, 0.009029345372460496, 0.009029345372460496, 0.010158013544018058, 0.009029345372460496, 0.009029345372460496, 0.009029345372460496, 0.011286681715575621, 0.012415349887133182, 0.01580135440180587, 0.013544018058690745, 0.012415349887133182, 0.012415349887133182, 0.013544018058690745, 0.014672686230248307, 0.014672686230248307, 0.014672686230248307, 0.013544018058690745, 0.014672686230248307, 0.01580135440180587, 0.01580135440180587, 0.016930022573363433, 0.01805869074492099, 0.01805869074492099, 0.01805869074492099, 0.01805869074492099, 0.019187358916478554, 0.020316027088036117, 0.02144469525959368, 0.022573363431151242, 0.022573363431151242, 0.022573363431151242, 0.022573363431151242, 0.022573363431151242, 0.022573363431151242, 0.022573363431151242, 0.022573363431151242, 0.023702031602708805, 0.023702031602708805, 0.024830699774266364, 0.024830699774266364, 0.025959367945823927, 0.028216704288939052, 0.030474040632054177, 0.0417607223476298, 0.06659142212189616, 0.16478555304740405], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/LAMTOR.gap.json b/pfam_gap_rates/LAMTOR.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c9fe4ae3f7f844afc21392cb744a111a6aacbc23
--- /dev/null
+++ b/pfam_gap_rates/LAMTOR.gap.json
@@ -0,0 +1 @@
+{"family": "LAMTOR", "n_seqs": 125, "length": 79, "gap_rates": [0.336, 0.128, 0.128, 0.128, 0.112, 0.112, 0.112, 0.32, 0.168, 0.144, 0.152, 0.136, 0.112, 0.104, 0.104, 0.92, 0.936, 0.912, 0.768, 0.528, 0.288, 0.264, 0.256, 0.168, 0.16, 0.456, 0.152, 0.088, 0.072, 0.088, 0.04, 0.032, 0.024, 0.024, 0.024, 0.024, 0.024, 0.016, 0.016, 0.104, 0.032, 0.016, 0.016, 0.016, 0.008, 0.008, 0.008, 0.008, 0.008, 0.008, 0.008, 0.008, 0.008, 0.0, 0.0, 0.008, 0.008, 0.008, 0.008, 0.008, 0.72, 0.192, 0.192, 0.208, 0.272, 0.296, 0.296, 0.344, 0.784, 0.368, 0.376, 0.424, 0.44, 0.448, 0.48, 0.512, 0.576, 0.592, 0.8], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/LAMTOR5.gap.json b/pfam_gap_rates/LAMTOR5.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a86f592903e5b97457110942f92b71827b7ddd88
--- /dev/null
+++ b/pfam_gap_rates/LAMTOR5.gap.json
@@ -0,0 +1 @@
+{"family": "LAMTOR5", "n_seqs": 102, "length": 98, "gap_rates": [0.3137254901960784, 0.29411764705882354, 0.29411764705882354, 0.2647058823529412, 0.22549019607843138, 0.22549019607843138, 0.22549019607843138, 0.20588235294117646, 0.18627450980392157, 0.1568627450980392, 0.14705882352941177, 0.17647058823529413, 0.10784313725490197, 0.09803921568627451, 0.049019607843137254, 0.0392156862745098, 0.06862745098039216, 0.058823529411764705, 0.029411764705882353, 0.0392156862745098, 0.029411764705882353, 0.029411764705882353, 0.029411764705882353, 0.029411764705882353, 0.029411764705882353, 0.029411764705882353, 0.029411764705882353, 0.029411764705882353, 0.029411764705882353, 0.029411764705882353, 0.029411764705882353, 0.029411764705882353, 0.029411764705882353, 0.0196078431372549, 0.0196078431372549, 0.029411764705882353, 0.00980392156862745, 0.029411764705882353, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.00980392156862745, 0.00980392156862745, 0.0196078431372549, 0.0196078431372549, 0.0196078431372549, 0.029411764705882353, 0.029411764705882353, 0.0196078431372549, 0.0196078431372549, 0.8725490196078431, 0.9117647058823529, 0.7843137254901961, 0.37254901960784315, 0.10784313725490197, 0.06862745098039216, 0.029411764705882353, 0.8921568627450981, 0.9215686274509803, 0.9411764705882353, 0.9313725490196079, 0.9019607843137255, 0.8823529411764706, 0.049019607843137254, 0.029411764705882353, 0.0196078431372549, 0.0196078431372549, 0.0196078431372549, 0.0196078431372549, 0.0196078431372549, 0.0196078431372549, 0.029411764705882353, 0.0392156862745098, 0.06862745098039216, 0.06862745098039216, 0.08823529411764706, 0.9117647058823529, 0.10784313725490197, 0.11764705882352941, 0.11764705882352941, 0.17647058823529413, 0.16666666666666666, 0.19607843137254902, 0.17647058823529413, 0.20588235294117646, 0.23529411764705882, 0.22549019607843138, 0.22549019607843138, 0.23529411764705882, 0.24509803921568626, 0.30392156862745096, 0.4215686274509804], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/LBP_BPI_CETP.gap.json b/pfam_gap_rates/LBP_BPI_CETP.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..1123b254832cd654c93a0b1c1e27f00fd21eed80
--- /dev/null
+++ b/pfam_gap_rates/LBP_BPI_CETP.gap.json
@@ -0,0 +1 @@
+{"family": "LBP_BPI_CETP", "n_seqs": 385, "length": 213, "gap_rates": [0.6, 0.522077922077922, 0.4779220779220779, 0.45714285714285713, 0.43636363636363634, 0.42077922077922075, 0.412987012987013, 0.4103896103896104, 0.4, 0.37662337662337664, 0.4155844155844156, 0.3922077922077922, 0.35844155844155845, 0.34285714285714286, 0.3220779220779221, 0.3038961038961039, 0.23636363636363636, 0.23376623376623376, 0.2519480519480519, 0.22337662337662337, 0.21818181818181817, 0.21038961038961038, 0.2077922077922078, 0.2077922077922078, 0.18701298701298702, 0.18701298701298702, 0.18701298701298702, 0.18701298701298702, 0.18701298701298702, 0.17922077922077922, 0.37922077922077924, 0.37142857142857144, 0.5116883116883116, 0.43376623376623374, 0.37402597402597404, 0.812987012987013, 0.8779220779220779, 0.8857142857142857, 0.9012987012987013, 0.9090909090909091, 0.9376623376623376, 0.948051948051948, 0.9272727272727272, 0.9012987012987013, 0.8935064935064935, 0.8831168831168831, 0.8727272727272727, 0.7922077922077922, 0.19220779220779222, 0.18701298701298702, 0.17922077922077922, 0.17142857142857143, 0.13766233766233765, 0.13246753246753246, 0.11948051948051948, 0.10649350649350649, 0.09350649350649351, 0.09350649350649351, 0.09350649350649351, 0.09350649350649351, 0.09350649350649351, 0.09090909090909091, 0.08831168831168831, 0.08831168831168831, 0.08571428571428572, 0.08571428571428572, 0.8415584415584415, 0.08311688311688312, 0.08311688311688312, 0.08571428571428572, 0.08571428571428572, 0.08311688311688312, 0.08311688311688312, 0.08831168831168831, 0.08051948051948052, 0.08051948051948052, 0.08051948051948052, 0.24415584415584415, 0.8571428571428571, 0.08831168831168831, 0.09350649350649351, 0.08311688311688312, 0.08051948051948052, 0.07792207792207792, 0.9428571428571428, 0.948051948051948, 0.9454545454545454, 0.9298701298701298, 0.08571428571428572, 0.08051948051948052, 0.07532467532467532, 0.07272727272727272, 0.06753246753246753, 0.06233766233766234, 0.05974025974025974, 0.05714285714285714, 0.12207792207792208, 0.11948051948051948, 0.1012987012987013, 0.08831168831168831, 0.08311688311688312, 0.7584415584415585, 0.8337662337662337, 0.8467532467532467, 0.9428571428571428, 0.948051948051948, 0.8701298701298701, 0.8415584415584415, 0.812987012987013, 0.7558441558441559, 0.14805194805194805, 0.8077922077922078, 0.0987012987012987, 0.1012987012987013, 0.1038961038961039, 0.1012987012987013, 0.05194805194805195, 0.5064935064935064, 0.5168831168831168, 0.5246753246753246, 0.7272727272727273, 0.8831168831168831, 0.9090909090909091, 0.7480519480519481, 0.561038961038961, 0.5246753246753246, 0.509090909090909, 0.43636363636363634, 0.046753246753246755, 0.04155844155844156, 0.04155844155844156, 0.04155844155844156, 0.04155844155844156, 0.04155844155844156, 0.03896103896103896, 0.03896103896103896, 0.03116883116883117, 0.03116883116883117, 0.03116883116883117, 0.02857142857142857, 0.025974025974025976, 0.023376623376623377, 0.023376623376623377, 0.01818181818181818, 0.21558441558441557, 0.8415584415584415, 0.07272727272727272, 0.02857142857142857, 0.023376623376623377, 0.02077922077922078, 0.02077922077922078, 0.023376623376623377, 0.023376623376623377, 0.023376623376623377, 0.023376623376623377, 0.023376623376623377, 0.023376623376623377, 0.023376623376623377, 0.023376623376623377, 0.023376623376623377, 0.023376623376623377, 0.023376623376623377, 0.023376623376623377, 0.023376623376623377, 0.025974025974025976, 0.025974025974025976, 0.05974025974025974, 0.05974025974025974, 0.06233766233766234, 0.07012987012987013, 0.7402597402597403, 0.9012987012987013, 0.8805194805194805, 0.625974025974026, 0.22077922077922077, 0.16883116883116883, 0.06233766233766234, 0.05194805194805195, 0.05194805194805195, 0.04935064935064935, 0.046753246753246755, 0.05194805194805195, 0.05454545454545454, 0.05454545454545454, 0.05714285714285714, 0.05974025974025974, 0.06233766233766234, 0.06493506493506493, 0.06753246753246753, 0.06753246753246753, 0.06753246753246753, 0.07272727272727272, 0.07532467532467532, 0.07532467532467532, 0.08311688311688312, 0.08311688311688312, 0.08571428571428572, 0.0987012987012987, 0.10649350649350649, 0.11688311688311688, 0.12467532467532468, 0.13506493506493505, 0.8649350649350649, 0.9038961038961039, 0.8727272727272727, 0.8285714285714286, 0.2, 0.34025974025974026, 0.36883116883116884, 0.4623376623376623, 0.6155844155844156, 0.7974025974025974, 0.9012987012987013], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/LCAT.gap.json b/pfam_gap_rates/LCAT.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c90ac590d0c0354f250b8a382ea28864f2cbcc9c
--- /dev/null
+++ b/pfam_gap_rates/LCAT.gap.json
@@ -0,0 +1 @@
+{"family": "LCAT", "n_seqs": 1034, "length": 519, "gap_rates": [0.7872340425531915, 0.6789168278529981, 0.7988394584139265, 0.7495164410058027, 0.5638297872340425, 0.5454545454545454, 0.5425531914893617, 0.5415860735009671, 0.5415860735009671, 0.5415860735009671, 0.5386847195357833, 0.5367504835589942, 0.5512572533849129, 0.5367504835589942, 0.5299806576402321, 0.528046421663443, 0.5261121856866537, 0.5222437137330754, 0.5802707930367504, 0.8326885880077369, 0.7746615087040619, 0.5145067698259188, 0.5058027079303675, 0.504835589941973, 0.5067698259187621, 0.7591876208897486, 0.7562862669245648, 0.5029013539651838, 0.4912959381044487, 0.4874274661508704, 0.48065764023210833, 0.4796905222437137, 0.47775628626692457, 0.4758220502901354, 0.47775628626692457, 0.4787234042553192, 0.47678916827852996, 0.7437137330754352, 0.7253384912959381, 0.4787234042553192, 0.4661508704061896, 0.4632495164410058, 0.45938104448742745, 0.4584139264990329, 0.4584139264990329, 0.4574468085106383, 0.45357833655706, 0.44874274661508706, 0.43520309477756286, 0.6092843326885881, 0.42940038684719534, 0.42359767891682787, 0.8404255319148937, 0.8413926499032882, 0.8259187620889749, 0.42166344294003866, 0.4206963249516441, 0.4206963249516441, 0.41876208897485495, 0.4158607350096712, 0.4148936170212766, 0.6441005802707931, 0.6276595744680851, 0.625725338491296, 0.6247582205029013, 0.4197292069632495, 0.4090909090909091, 0.9390715667311412, 0.9477756286266924, 0.9235976789168279, 0.40038684719535783, 0.7214700193423598, 0.6711798839458414, 0.3839458413926499, 0.5029013539651838, 0.4622823984526112, 0.31431334622823986, 0.30754352030947774, 0.30464216634429403, 0.2978723404255319, 0.2940038684719536, 0.29206963249516443, 0.28916827852998067, 0.2872340425531915, 0.2872340425531915, 0.28336557059961315, 0.28336557059961315, 0.2852998065764023, 0.2804642166344294, 0.27176015473887816, 0.27079303675048355, 0.26499032882011603, 0.26305609284332687, 0.5367504835589942, 0.23984526112185686, 0.2263056092843327, 0.22147001934235977, 0.20889748549323017, 0.20406189555125726, 0.20212765957446807, 0.20212765957446807, 0.2011605415860735, 0.20019342359767892, 0.20212765957446807, 0.20019342359767892, 0.5880077369439072, 0.8800773694390716, 0.90715667311412, 0.9090909090909091, 0.8994197292069632, 0.6044487427466151, 0.5570599613152805, 0.20212765957446807, 0.21663442940038685, 0.21760154738878143, 0.20986460348162475, 0.2079303675048356, 0.21566731141199227, 0.22920696324951645, 0.38104448742746616, 0.32205029013539654, 0.28916827852998067, 0.19148936170212766, 0.18375241779497098, 0.18085106382978725, 0.1769825918762089, 0.1769825918762089, 0.1760154738878143, 0.17504835589941972, 0.18181818181818182, 0.18375241779497098, 0.1827852998065764, 0.5715667311411993, 0.17794970986460348, 0.172147001934236, 0.16924564796905223, 0.1702127659574468, 0.1653771760154739, 0.16634429400386846, 0.16731141199226304, 0.16731141199226304, 0.16731141199226304, 0.16731141199226304, 0.16731141199226304, 0.16731141199226304, 0.16150870406189555, 0.16150870406189555, 0.16054158607350097, 0.16344294003868473, 0.1644100580270793, 0.1653771760154739, 0.1653771760154739, 0.16827852998065765, 0.16924564796905223, 0.172147001934236, 0.1702127659574468, 0.1702127659574468, 0.44294003868471954, 0.2127659574468085, 0.20019342359767892, 0.20986460348162475, 0.2379110251450677, 0.7117988394584139, 0.7408123791102514, 0.7562862669245648, 0.8916827852998066, 0.8955512572533849, 0.7630560928433269, 0.7514506769825918, 0.7340425531914894, 0.7021276595744681, 0.4197292069632495, 0.3230174081237911, 0.2620889748549323, 0.195357833655706, 0.18471953578336556, 0.18085106382978725, 0.1769825918762089, 0.1769825918762089, 0.17794970986460348, 0.17794970986460348, 0.17891682785299806, 0.17891682785299806, 0.1769825918762089, 0.17891682785299806, 0.17891682785299806, 0.18085106382978725, 0.17891682785299806, 0.19245647969052224, 0.1895551257253385, 0.18375241779497098, 0.1885880077369439, 0.19342359767891681, 0.19439071566731142, 0.2059961315280464, 0.2127659574468085, 0.21663442940038685, 0.22437137330754353, 0.2369439071566731, 0.2437137330754352, 0.2495164410058027, 0.2678916827852998, 0.28239845261121854, 0.2804642166344294, 0.28336557059961315, 0.8558994197292069, 0.9294003868471954, 0.9381044487427466, 0.9013539651837524, 0.8249516441005803, 0.29206963249516443, 0.29206963249516443, 0.38878143133462284, 0.30754352030947774, 0.3036750483558994, 0.30077369439071566, 0.3056092843326886, 0.3036750483558994, 0.30464216634429403, 0.30464216634429403, 0.30754352030947774, 0.30851063829787234, 0.3065764023210832, 0.3056092843326886, 0.30851063829787234, 0.30851063829787234, 0.30851063829787234, 0.30851063829787234, 0.7649903288201161, 0.7717601547388782, 0.7756286266924565, 0.7794970986460348, 0.7804642166344294, 0.7823984526112185, 0.9294003868471954, 0.9429400386847195, 0.9313346228239845, 0.9264990328820116, 0.7823984526112185, 0.7804642166344294, 0.776595744680851, 0.7736943907156673, 0.7649903288201161, 0.7620889748549323, 0.30947775628626695, 0.3114119922630561, 0.31334622823984526, 0.31334622823984526, 0.31334622823984526, 0.902321083172147, 0.9148936170212766, 0.9187620889748549, 0.913926499032882, 0.8916827852998066, 0.6189555125725339, 0.5802707930367504, 0.5851063829787234, 0.5880077369439072, 0.6005802707930368, 0.5918762088974855, 0.5696324951644101, 0.42166344294003866, 0.4284332688588008, 0.437137330754352, 0.45551257253384914, 0.8984526112185687, 0.9003868471953579, 0.9042553191489362, 0.9052224371373307, 0.9100580270793037, 0.913926499032882, 0.9187620889748549, 0.9187620889748549, 0.9197292069632496, 0.9206963249516441, 0.9206963249516441, 0.9352030947775629, 0.9206963249516441, 0.9197292069632496, 0.9187620889748549, 0.9187620889748549, 0.9168278529980658, 0.9119922630560928, 0.9081237911025145, 0.9042553191489362, 0.9042553191489362, 0.8994197292069632, 0.8974854932301741, 0.4622823984526112, 0.4874274661508704, 0.4796905222437137, 0.4787234042553192, 0.48549323017408125, 0.5773694390715667, 0.5522243713733076, 0.5512572533849129, 0.5493230174081238, 0.5077369439071566, 0.5493230174081238, 0.539651837524178, 0.5793036750483559, 0.5551257253384912, 0.5386847195357833, 0.5183752417794971, 0.5058027079303675, 0.5067698259187621, 0.5067698259187621, 0.5125725338491296, 0.5135396518375241, 0.5174081237911026, 0.5096711798839458, 0.7911025145067698, 0.8017408123791102, 0.8230174081237911, 0.8829787234042553, 0.9264990328820116, 0.9381044487427466, 0.9448742746615088, 0.9342359767891683, 0.9187620889748549, 0.8346228239845261, 0.809477756286267, 0.7959381044487428, 0.7852998065764023, 0.5222437137330754, 0.5502901353965184, 0.5377176015473888, 0.7021276595744681, 0.6566731141199227, 0.6431334622823984, 0.6470019342359767, 0.6460348162475822, 0.6470019342359767, 0.6528046421663443, 0.6615087040618955, 0.6644100580270793, 0.660541586073501, 0.655705996131528, 0.5705996131528046, 0.5667311411992263, 0.5667311411992263, 0.5667311411992263, 0.5686653771760155, 0.5705996131528046, 0.5696324951644101, 0.5735009671179884, 0.5735009671179884, 0.5725338491295938, 0.5735009671179884, 0.574468085106383, 0.574468085106383, 0.5764023210831721, 0.5783365570599613, 0.5676982591876208, 0.5725338491295938, 0.5764023210831721, 0.5754352030947776, 0.5725338491295938, 0.5754352030947776, 0.706963249516441, 0.6943907156673114, 0.6914893617021277, 0.6750483558994197, 0.6615087040618955, 0.6566731141199227, 0.6566731141199227, 0.6518375241779497, 0.8491295938104448, 0.8365570599613152, 0.6431334622823984, 0.6421663442940039, 0.6411992263056093, 0.6431334622823984, 0.6450676982591876, 0.6441005802707931, 0.6392649903288201, 0.6421663442940039, 0.6402321083172147, 0.6363636363636364, 0.6315280464216635, 0.6315280464216635, 0.6286266924564797, 0.6218568665377177, 0.620889748549323, 0.5996131528046421, 0.5164410058027079, 0.5290135396518375, 0.5261121856866537, 0.504835589941973, 0.5009671179883946, 0.5, 0.5, 0.5009671179883946, 0.5, 0.5019342359767892, 0.5009671179883946, 0.5019342359767892, 0.5009671179883946, 0.5009671179883946, 0.5009671179883946, 0.5009671179883946, 0.5009671179883946, 0.5009671179883946, 0.5009671179883946, 0.5029013539651838, 0.5029013539651838, 0.5029013539651838, 0.5019342359767892, 0.5019342359767892, 0.5019342359767892, 0.7030947775628626, 0.6972920696324951, 0.6731141199226306, 0.6673114119922631, 0.6624758220502901, 0.660541586073501, 0.655705996131528, 0.660541586073501, 0.6576402321083172, 0.723404255319149, 0.7050290135396519, 0.6740812379110251, 0.558027079303675, 0.5319148936170213, 0.5135396518375241, 0.5203094777562862, 0.5145067698259188, 0.5135396518375241, 0.5174081237911026, 0.5154738878143134, 0.5087040618955513, 0.5096711798839458, 0.5125725338491296, 0.5164410058027079, 0.511605415860735, 0.8849129593810445, 0.8858800773694391, 0.8945841392649904, 0.8994197292069632, 0.8994197292069632, 0.9032882011605415, 0.937137330754352, 0.941972920696325, 0.9448742746615088, 0.9468085106382979, 0.9477756286266924, 0.9497098646034816, 0.9468085106382979, 0.9448742746615088, 0.9429400386847195, 0.937137330754352, 0.9332688588007737, 0.9032882011605415, 0.8994197292069632, 0.8984526112185687, 0.8858800773694391, 0.8858800773694391, 0.8839458413926499, 0.5154738878143134, 0.5154738878143134, 0.5164410058027079, 0.5164410058027079, 0.5145067698259188, 0.5145067698259188, 0.5145067698259188, 0.5174081237911026, 0.5183752417794971, 0.5222437137330754, 0.558027079303675, 0.5725338491295938, 0.7969052224371374, 0.574468085106383, 0.574468085106383, 0.574468085106383, 0.816247582205029, 0.5764023210831721, 0.5754352030947776, 0.7292069632495164, 0.7911025145067698, 0.8926499032882012, 0.7911025145067698, 0.7804642166344294, 0.6537717601547389, 0.6054158607350096, 0.6083172147001934, 0.6102514506769826, 0.6112185686653772, 0.6092843326885881, 0.6112185686653772, 0.6160541586073501, 0.6199226305609284, 0.6199226305609284, 0.6247582205029013, 0.625725338491296, 0.7350096711798839, 0.7379110251450677, 0.741779497098646, 0.7437137330754352, 0.793036750483559, 0.793036750483559, 0.7940038684719536, 0.7940038684719536, 0.9052224371373307, 0.7949709864603481, 0.7940038684719536, 0.793036750483559, 0.793036750483559, 0.793036750483559, 0.6547388781431335, 0.6595744680851063, 0.6595744680851063, 0.6624758220502901, 0.6615087040618955, 0.6663442940038685, 0.6673114119922631, 0.6702127659574468, 0.6769825918762089, 0.7001934235976789, 0.8752417794970987], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/LIP.gap.json b/pfam_gap_rates/LIP.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e3626f0c67c7795ca09964d8b113a03f3172b579
--- /dev/null
+++ b/pfam_gap_rates/LIP.gap.json
@@ -0,0 +1 @@
+{"family": "LIP", "n_seqs": 622, "length": 304, "gap_rates": [0.9485530546623794, 0.9260450160771704, 0.9083601286173634, 0.8971061093247589, 0.882636655948553, 0.860128617363344, 0.8360128617363344, 0.7942122186495176, 0.7556270096463023, 0.7122186495176849, 0.662379421221865, 0.6012861736334405, 0.5659163987138264, 0.5144694533762058, 0.4903536977491961, 0.46141479099678456, 0.3971061093247588, 0.3102893890675241, 0.2684887459807074, 0.21543408360128619, 0.17363344051446947, 0.15594855305466238, 0.13183279742765272, 0.11093247588424437, 0.1045016077170418, 0.10289389067524116, 0.10289389067524116, 0.1045016077170418, 0.09967845659163987, 0.09646302250803858, 0.0932475884244373, 0.0932475884244373, 0.0932475884244373, 0.09807073954983923, 0.09646302250803858, 0.0932475884244373, 0.0932475884244373, 0.0932475884244373, 0.5337620578778135, 0.5434083601286174, 0.9244372990353698, 0.8745980707395499, 0.5353697749196141, 0.5321543408360129, 0.0932475884244373, 0.09485530546623794, 0.1639871382636656, 0.09003215434083602, 0.09003215434083602, 0.09163987138263666, 0.09003215434083602, 0.09003215434083602, 0.08842443729903537, 0.08681672025723473, 0.08681672025723473, 0.08681672025723473, 0.08520900321543408, 0.08520900321543408, 0.08520900321543408, 0.08681672025723473, 0.08681672025723473, 0.08681672025723473, 0.08520900321543408, 0.08681672025723473, 0.3311897106109325, 0.2282958199356913, 0.22508038585209003, 0.1527331189710611, 0.15594855305466238, 0.36977491961414793, 0.18488745980707397, 0.2909967845659164, 0.2282958199356913, 0.1832797427652733, 0.15916398713826366, 0.11093247588424437, 0.09646302250803858, 0.09163987138263666, 0.09163987138263666, 0.1045016077170418, 0.08842443729903537, 0.08681672025723473, 0.08681672025723473, 0.08681672025723473, 0.08520900321543408, 0.08520900321543408, 0.08520900321543408, 0.08520900321543408, 0.08842443729903537, 0.08842443729903537, 0.08681672025723473, 0.08842443729903537, 0.09485530546623794, 0.0932475884244373, 0.10128617363344052, 0.1045016077170418, 0.09646302250803858, 0.10128617363344052, 0.09967845659163987, 0.10289389067524116, 0.09967845659163987, 0.09807073954983923, 0.09967845659163987, 0.09967845659163987, 0.1045016077170418, 0.842443729903537, 0.8231511254019293, 0.1045016077170418, 0.10289389067524116, 0.10289389067524116, 0.1045016077170418, 0.10610932475884244, 0.10610932475884244, 0.10771704180064309, 0.11093247588424437, 0.11414790996784566, 0.12861736334405144, 0.12540192926045016, 0.12861736334405144, 0.13504823151125403, 0.13665594855305466, 0.14469453376205788, 0.14630225080385853, 0.15112540192926044, 0.16881028938906753, 0.17845659163987138, 0.1864951768488746, 0.18810289389067525, 0.19131832797427653, 0.19131832797427653, 0.1977491961414791, 0.19614147909967847, 0.19614147909967847, 0.1977491961414791, 0.1945337620578778, 0.19614147909967847, 0.1977491961414791, 0.20257234726688103, 0.20257234726688103, 0.20418006430868169, 0.20418006430868169, 0.2090032154340836, 0.20418006430868169, 0.20739549839228297, 0.2090032154340836, 0.21382636655948553, 0.21543408360128619, 0.2315112540192926, 0.25562700964630225, 0.2797427652733119, 0.27491961414790994, 0.3553054662379421, 0.3617363344051447, 0.25562700964630225, 0.24115755627009647, 0.22990353697749197, 0.22508038585209003, 0.2202572347266881, 0.2170418006430868, 0.21864951768488747, 0.22347266881028938, 0.2491961414790997, 0.28135048231511256, 0.2540192926045016, 0.2379421221864952, 0.23311897106109325, 0.2347266881028939, 0.2347266881028939, 0.2315112540192926, 0.2266881028938907, 0.22347266881028938, 0.22186495176848875, 0.2202572347266881, 0.2282958199356913, 0.2347266881028939, 0.2347266881028939, 0.2491961414790997, 0.2620578778135048, 0.2459807073954984, 0.24758842443729903, 0.24758842443729903, 0.24758842443729903, 0.2427652733118971, 0.25562700964630225, 0.25241157556270094, 0.4212218649517685, 0.5691318327974276, 0.477491961414791, 0.43569131832797425, 0.5819935691318328, 0.5016077170418006, 0.4340836012861736, 0.36816720257234725, 0.39389067524115756, 0.3054662379421222, 0.26688102893890675, 0.2508038585209003, 0.25241157556270094, 0.25562700964630225, 0.2765273311897106, 0.27813504823151125, 0.26366559485530544, 0.2604501607717042, 0.2508038585209003, 0.887459807073955, 0.2491961414790997, 0.2459807073954984, 0.2427652733118971, 0.2459807073954984, 0.24758842443729903, 0.2427652733118971, 0.2459807073954984, 0.24758842443729903, 0.24758842443729903, 0.2427652733118971, 0.2459807073954984, 0.7845659163987139, 0.7202572347266881, 0.6527331189710611, 0.27491961414790994, 0.2540192926045016, 0.2508038585209003, 0.24437299035369775, 0.24115755627009647, 0.23311897106109325, 0.2170418006430868, 0.21221864951768488, 0.21221864951768488, 0.21221864951768488, 0.21221864951768488, 0.21221864951768488, 0.21221864951768488, 0.2057877813504823, 0.20739549839228297, 0.2090032154340836, 0.20418006430868169, 0.2057877813504823, 0.20739549839228297, 0.2057877813504823, 0.20418006430868169, 0.2057877813504823, 0.2057877813504823, 0.2057877813504823, 0.2057877813504823, 0.2057877813504823, 0.2090032154340836, 0.2090032154340836, 0.2090032154340836, 0.21061093247588425, 0.21061093247588425, 0.21382636655948553, 0.21221864951768488, 0.21221864951768488, 0.21061093247588425, 0.21382636655948553, 0.5707395498392283, 0.4871382636655949, 0.2395498392282958, 0.22990353697749197, 0.22508038585209003, 0.23311897106109325, 0.2347266881028939, 0.23633440514469453, 0.2459807073954984, 0.24758842443729903, 0.2572347266881029, 0.25562700964630225, 0.2604501607717042, 0.8987138263665595, 0.9083601286173634, 0.9228295819935691, 0.932475884244373, 0.9260450160771704, 0.9180064308681672, 0.9067524115755627, 0.8922829581993569, 0.26366559485530544, 0.27009646302250806, 0.2797427652733119, 0.28938906752411575, 0.2942122186495177, 0.297427652733119, 0.2942122186495177, 0.297427652733119, 0.297427652733119, 0.2958199356913183, 0.3022508038585209, 0.30385852090032156, 0.30385852090032156, 0.3022508038585209, 0.3022508038585209, 0.30385852090032156, 0.31189710610932475, 0.32636655948553056, 0.342443729903537, 0.34565916398713825, 0.35852090032154343, 0.3762057877813505, 0.40514469453376206, 0.4790996784565916, 0.5514469453376206, 0.7234726688102894, 0.8327974276527331, 0.9372990353697749], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/LPMO_10.gap.json b/pfam_gap_rates/LPMO_10.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a3b3692544f741610206a8240fac10d4bb0115aa
--- /dev/null
+++ b/pfam_gap_rates/LPMO_10.gap.json
@@ -0,0 +1 @@
+{"family": "LPMO_10", "n_seqs": 710, "length": 324, "gap_rates": [0.19859154929577466, 0.18873239436619718, 0.18873239436619718, 0.18028169014084508, 0.17464788732394365, 0.17464788732394365, 0.1732394366197183, 0.1732394366197183, 0.16901408450704225, 0.16901408450704225, 0.16901408450704225, 0.9084507042253521, 0.8943661971830986, 0.2830985915492958, 0.3267605633802817, 0.30422535211267604, 0.35774647887323946, 0.352112676056338, 0.719718309859155, 0.4014084507042254, 0.5380281690140845, 0.5985915492957746, 0.6859154929577465, 0.923943661971831, 0.643661971830986, 0.7338028169014085, 0.7112676056338029, 0.6929577464788732, 0.6774647887323944, 0.6154929577464788, 0.5887323943661972, 0.43380281690140843, 0.3, 0.2056338028169014, 0.2056338028169014, 0.20422535211267606, 0.5676056338028169, 0.5577464788732395, 0.5394366197183098, 0.5197183098591549, 0.1676056338028169, 0.7971830985915493, 0.8014084507042254, 0.8492957746478873, 0.9380281690140845, 0.9422535211267605, 0.9366197183098591, 0.8056338028169014, 0.7985915492957747, 0.795774647887324, 0.5225352112676056, 0.23943661971830985, 0.4802816901408451, 0.28169014084507044, 0.24929577464788732, 0.2577464788732394, 0.2676056338028169, 0.2661971830985915, 0.2704225352112676, 0.28169014084507044, 0.2802816901408451, 0.5112676056338028, 0.5352112676056338, 0.5408450704225352, 0.528169014084507, 0.4802816901408451, 0.7676056338028169, 0.9253521126760563, 0.9408450704225352, 0.9492957746478873, 0.9366197183098591, 0.9042253521126761, 0.7422535211267606, 0.5338028169014084, 0.4915492957746479, 0.4802816901408451, 0.4647887323943662, 0.45211267605633804, 0.428169014084507, 0.3647887323943662, 0.35774647887323946, 0.2887323943661972, 0.29295774647887324, 0.12535211267605634, 0.11690140845070422, 0.11830985915492957, 0.11690140845070422, 0.6746478873239437, 0.11690140845070422, 0.11690140845070422, 0.11690140845070422, 0.5661971830985916, 0.7394366197183099, 0.7704225352112676, 0.8492957746478873, 0.8211267605633803, 0.7591549295774648, 0.6957746478873239, 0.5676056338028169, 0.22253521126760564, 0.1591549295774648, 0.16056338028169015, 0.5873239436619718, 0.928169014084507, 0.5183098591549296, 0.49577464788732395, 0.4859154929577465, 0.15352112676056337, 0.16056338028169015, 0.4563380281690141, 0.4267605633802817, 0.4295774647887324, 0.8929577464788733, 0.9352112676056338, 0.9338028169014084, 0.7183098591549296, 0.3957746478873239, 0.3732394366197183, 0.35070422535211265, 0.8802816901408451, 0.7338028169014085, 0.26901408450704223, 0.05352112676056338, 0.057746478873239436, 0.46338028169014084, 0.4211267605633803, 0.3957746478873239, 0.09154929577464789, 0.08873239436619719, 0.023943661971830985, 0.022535211267605635, 0.028169014084507043, 0.03943661971830986, 0.2140845070422535, 0.02535211267605634, 0.01971830985915493, 0.015492957746478873, 0.015492957746478873, 0.015492957746478873, 0.015492957746478873, 0.015492957746478873, 0.015492957746478873, 0.015492957746478873, 0.015492957746478873, 0.015492957746478873, 0.015492957746478873, 0.5901408450704225, 0.015492957746478873, 0.014084507042253521, 0.014084507042253521, 0.015492957746478873, 0.015492957746478873, 0.016901408450704224, 0.016901408450704224, 0.016901408450704224, 0.01971830985915493, 0.6225352112676056, 0.6422535211267606, 0.6549295774647887, 0.6901408450704225, 0.719718309859155, 0.8985915492957747, 0.923943661971831, 0.9450704225352112, 0.9492957746478873, 0.9366197183098591, 0.9070422535211268, 0.8816901408450705, 0.6957746478873239, 0.6647887323943662, 0.6535211267605634, 0.6281690140845071, 0.6211267605633802, 0.02535211267605634, 0.029577464788732393, 0.038028169014084505, 0.0323943661971831, 0.035211267605633804, 0.036619718309859155, 0.9084507042253521, 0.8183098591549296, 0.476056338028169, 0.13802816901408452, 0.12112676056338029, 0.09436619718309859, 0.09718309859154929, 0.056338028169014086, 0.09295774647887324, 0.4619718309859155, 0.45211267605633804, 0.4042253521126761, 0.6915492957746479, 0.9070422535211268, 0.9267605633802817, 0.9464788732394366, 0.9436619718309859, 0.923943661971831, 0.8830985915492958, 0.6605633802816901, 0.37183098591549296, 0.4140845070422535, 0.4309859154929577, 0.3732394366197183, 0.8436619718309859, 0.9014084507042254, 0.9478873239436619, 0.9267605633802817, 0.8830985915492958, 0.6464788732394366, 0.17464788732394365, 0.24225352112676057, 0.2676056338028169, 0.24084507042253522, 0.28169014084507044, 0.38591549295774646, 0.38309859154929576, 0.6366197183098592, 0.7591549295774648, 0.8253521126760563, 0.8704225352112676, 0.8915492957746479, 0.9028169014084507, 0.9042253521126761, 0.9183098591549296, 0.9267605633802817, 0.9338028169014084, 0.9394366197183098, 0.9422535211267605, 0.9464788732394366, 0.9464788732394366, 0.9436619718309859, 0.9422535211267605, 0.9380281690140845, 0.928169014084507, 0.9183098591549296, 0.9084507042253521, 0.9042253521126761, 0.8971830985915493, 0.8802816901408451, 0.8605633802816901, 0.7971830985915493, 0.7225352112676057, 0.5549295774647888, 0.13661971830985917, 0.09718309859154929, 0.030985915492957747, 0.029577464788732393, 0.02535211267605634, 0.02535211267605634, 0.029577464788732393, 0.39436619718309857, 0.3732394366197183, 0.8154929577464789, 0.023943661971830985, 0.022535211267605635, 0.022535211267605635, 0.022535211267605635, 0.028169014084507043, 0.8633802816901408, 0.8661971830985915, 0.9323943661971831, 0.8718309859154929, 0.8633802816901408, 0.8619718309859155, 0.3211267605633803, 0.04507042253521127, 0.038028169014084505, 0.02676056338028169, 0.028169014084507043, 0.04929577464788732, 0.036619718309859155, 0.028169014084507043, 0.029577464788732393, 0.0323943661971831, 0.0323943661971831, 0.3436619718309859, 0.035211267605633804, 0.038028169014084505, 0.04647887323943662, 0.7464788732394366, 0.6408450704225352, 0.04647887323943662, 0.5394366197183098, 0.08591549295774648, 0.9464788732394366, 0.9464788732394366, 0.9478873239436619, 0.9478873239436619, 0.9492957746478873, 0.9492957746478873, 0.9492957746478873, 0.9492957746478873, 0.9492957746478873, 0.9492957746478873, 0.9478873239436619, 0.9464788732394366, 0.9464788732394366, 0.9464788732394366, 0.06338028169014084, 0.7295774647887324, 0.7591549295774648, 0.7661971830985915, 0.780281690140845, 0.780281690140845, 0.7859154929577464, 0.8098591549295775, 0.9464788732394366, 0.7873239436619718, 0.7830985915492957, 0.780281690140845, 0.7788732394366197, 0.7605633802816901, 0.7450704225352113, 0.7281690140845071, 0.06901408450704226, 0.057746478873239436, 0.057746478873239436, 0.057746478873239436, 0.057746478873239436, 0.057746478873239436, 0.059154929577464786, 0.06056338028169014, 0.07042253521126761, 0.1], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/LRAT.gap.json b/pfam_gap_rates/LRAT.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..efad4461f6e3e2f307c4b5777a57a05622765867
--- /dev/null
+++ b/pfam_gap_rates/LRAT.gap.json
@@ -0,0 +1 @@
+{"family": "LRAT", "n_seqs": 514, "length": 173, "gap_rates": [0.6108949416342413, 0.377431906614786, 0.27431906614785995, 0.23151750972762647, 0.22178988326848248, 0.22178988326848248, 0.2198443579766537, 0.21595330739299612, 0.2140077821011673, 0.22178988326848248, 0.21595330739299612, 0.20817120622568094, 0.5875486381322957, 0.8501945525291829, 0.9066147859922179, 0.8715953307392996, 0.8404669260700389, 0.5408560311284046, 0.20038910505836577, 0.1867704280155642, 0.1867704280155642, 0.18482490272373542, 0.17898832684824903, 0.17898832684824903, 0.1556420233463035, 0.1517509727626459, 0.15369649805447472, 0.1556420233463035, 0.1575875486381323, 0.9494163424124513, 0.9474708171206225, 0.15953307392996108, 0.15953307392996108, 0.16342412451361868, 0.1556420233463035, 0.1517509727626459, 0.1517509727626459, 0.1517509727626459, 0.15369649805447472, 0.1867704280155642, 0.20817120622568094, 0.2198443579766537, 0.6964980544747081, 0.7178988326848249, 0.830739299610895, 0.9357976653696498, 0.9494163424124513, 0.9416342412451362, 0.9221789883268483, 0.7879377431906615, 0.7062256809338522, 0.6828793774319066, 0.6264591439688716, 0.6595330739299611, 0.6400778210116731, 0.6284046692607004, 0.6108949416342413, 0.6050583657587548, 0.5933852140077821, 0.5038910505836576, 0.4785992217898833, 0.4688715953307393, 0.4649805447470817, 0.4649805447470817, 0.4688715953307393, 0.45330739299610895, 0.37937743190661477, 0.7392996108949417, 0.7665369649805448, 0.8443579766536965, 0.9221789883268483, 0.9455252918287937, 0.9299610894941635, 0.8988326848249028, 0.7840466926070039, 0.7529182879377432, 0.72568093385214, 0.33852140077821014, 0.32490272373540857, 0.3035019455252918, 0.2801556420233463, 0.26653696498054474, 0.2587548638132296, 0.2587548638132296, 0.23735408560311283, 0.24124513618677043, 0.1828793774319066, 0.15953307392996108, 0.13229571984435798, 0.1264591439688716, 0.1303501945525292, 0.12840466926070038, 0.12062256809338522, 0.11478599221789883, 0.11673151750972763, 0.11284046692607004, 0.11284046692607004, 0.12062256809338522, 0.11867704280155641, 0.11673151750972763, 0.11478599221789883, 0.11284046692607004, 0.10894941634241245, 0.12062256809338522, 0.11478599221789883, 0.11284046692607004, 0.11284046692607004, 0.11284046692607004, 0.11089494163424124, 0.11673151750972763, 0.914396887159533, 0.29377431906614787, 0.24708171206225682, 0.22568093385214008, 0.18093385214007782, 0.6789883268482491, 0.688715953307393, 0.7003891050583657, 0.7042801556420234, 0.7062256809338522, 0.708171206225681, 0.7529182879377432, 0.7178988326848249, 0.708171206225681, 0.7042801556420234, 0.7003891050583657, 0.7003891050583657, 0.6848249027237354, 0.6770428015564203, 0.11867704280155641, 0.11284046692607004, 0.09727626459143969, 0.0914396887159533, 0.0914396887159533, 0.0914396887159533, 0.0914396887159533, 0.0914396887159533, 0.0914396887159533, 0.0914396887159533, 0.0933852140077821, 0.0914396887159533, 0.09533073929961089, 0.7101167315175098, 0.943579766536965, 0.6926070038910506, 0.0933852140077821, 0.0933852140077821, 0.09533073929961089, 0.09727626459143969, 0.9124513618677043, 0.6964980544747081, 0.09922178988326848, 0.09727626459143969, 0.09727626459143969, 0.09727626459143969, 0.09727626459143969, 0.10116731517509728, 0.09922178988326848, 0.09922178988326848, 0.10116731517509728, 0.10505836575875487, 0.10311284046692606, 0.10311284046692606, 0.10311284046692606, 0.10311284046692606, 0.10311284046692606, 0.10311284046692606, 0.10505836575875487, 0.122568093385214, 0.1264591439688716, 0.13424124513618677, 0.1926070038910506, 0.4766536964980545], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/LRRNT.gap.json b/pfam_gap_rates/LRRNT.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..79c31c42530f89c6e8710f37e87cbe82d741f3d4
--- /dev/null
+++ b/pfam_gap_rates/LRRNT.gap.json
@@ -0,0 +1 @@
+{"family": "LRRNT", "n_seqs": 675, "length": 33, "gap_rates": [0.5481481481481482, 0.045925925925925926, 0.03851851851851852, 0.03111111111111111, 0.017777777777777778, 0.0, 0.0, 0.0, 0.0, 0.6637037037037037, 0.9051851851851852, 0.9407407407407408, 0.76, 0.64, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.008888888888888889, 0.16444444444444445, 0.06074074074074074, 0.14222222222222222], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/LSM14.gap.json b/pfam_gap_rates/LSM14.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e8539f39deddd06cb98a2f6a29eab33b6b1d8e54
--- /dev/null
+++ b/pfam_gap_rates/LSM14.gap.json
@@ -0,0 +1 @@
+{"family": "LSM14", "n_seqs": 415, "length": 79, "gap_rates": [0.4650602409638554, 0.17590361445783131, 0.10602409638554217, 0.09397590361445783, 0.07228915662650602, 0.06265060240963856, 0.05301204819277108, 0.05060240963855422, 0.05060240963855422, 0.05060240963855422, 0.05060240963855422, 0.043373493975903614, 0.043373493975903614, 0.043373493975903614, 0.03614457831325301, 0.9253012048192771, 0.03132530120481928, 0.03132530120481928, 0.03132530120481928, 0.02891566265060241, 0.02891566265060241, 0.02891566265060241, 0.03132530120481928, 0.02891566265060241, 0.02891566265060241, 0.02891566265060241, 0.05783132530120482, 0.05783132530120482, 0.02891566265060241, 0.02891566265060241, 0.02891566265060241, 0.03132530120481928, 0.03132530120481928, 0.02891566265060241, 0.02891566265060241, 0.016867469879518072, 0.016867469879518072, 0.014457831325301205, 0.014457831325301205, 0.014457831325301205, 0.016867469879518072, 0.014457831325301205, 0.00963855421686747, 0.00963855421686747, 0.7421686746987952, 0.08674698795180723, 0.09879518072289156, 0.9349397590361446, 0.06987951807228916, 0.021686746987951807, 0.02891566265060241, 0.024096385542168676, 0.9060240963855422, 0.6602409638554216, 0.10361445783132531, 0.10361445783132531, 0.10361445783132531, 0.10361445783132531, 0.10361445783132531, 0.10361445783132531, 0.10602409638554217, 0.10843373493975904, 0.0963855421686747, 0.0963855421686747, 0.024096385542168676, 0.024096385542168676, 0.024096385542168676, 0.02891566265060241, 0.03132530120481928, 0.03132530120481928, 0.033734939759036145, 0.033734939759036145, 0.033734939759036145, 0.03855421686746988, 0.03855421686746988, 0.04096385542168675, 0.05783132530120482, 0.07228915662650602, 0.17349397590361446], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/LepA_C.gap.json b/pfam_gap_rates/LepA_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..016a9cc665d3a3d2dd80b32383794c354e66ceab
--- /dev/null
+++ b/pfam_gap_rates/LepA_C.gap.json
@@ -0,0 +1 @@
+{"family": "LepA_C", "n_seqs": 2499, "length": 107, "gap_rates": [0.1916766706682673, 0.03441376550620248, 0.018807523009203683, 0.014005602240896359, 0.014005602240896359, 0.013605442176870748, 0.012404961984793917, 0.012404961984793917, 0.012404961984793917, 0.012404961984793917, 0.012004801920768308, 0.012004801920768308, 0.012004801920768308, 0.012004801920768308, 0.012004801920768308, 0.012004801920768308, 0.011604641856742696, 0.011604641856742696, 0.011604641856742696, 0.011604641856742696, 0.011604641856742696, 0.011604641856742696, 0.011604641856742696, 0.011604641856742696, 0.011604641856742696, 0.011604641856742696, 0.011604641856742696, 0.011204481792717087, 0.010404161664665866, 0.010404161664665866, 0.010404161664665866, 0.010804321728691477, 0.010804321728691477, 0.010404161664665866, 0.010404161664665866, 0.011204481792717087, 0.010804321728691477, 0.010804321728691477, 0.011604641856742696, 0.012004801920768308, 0.012404961984793917, 0.012404961984793917, 0.012404961984793917, 0.012404961984793917, 0.012805122048819529, 0.013605442176870748, 0.014005602240896359, 0.014005602240896359, 0.014405762304921969, 0.014005602240896359, 0.014005602240896359, 0.014005602240896359, 0.014405762304921969, 0.014405762304921969, 0.013605442176870748, 0.014405762304921969, 0.014405762304921969, 0.014005602240896359, 0.012805122048819529, 0.012404961984793917, 0.012004801920768308, 0.012404961984793917, 0.013205282112845138, 0.013205282112845138, 0.013205282112845138, 0.012805122048819529, 0.012004801920768308, 0.011604641856742696, 0.011204481792717087, 0.011204481792717087, 0.011604641856742696, 0.011604641856742696, 0.012004801920768308, 0.012004801920768308, 0.011204481792717087, 0.011604641856742696, 0.011604641856742696, 0.011604641856742696, 0.011604641856742696, 0.011604641856742696, 0.012404961984793917, 0.012805122048819529, 0.012805122048819529, 0.013605442176870748, 0.014005602240896359, 0.014005602240896359, 0.013605442176870748, 0.01520608243297319, 0.01520608243297319, 0.01600640256102441, 0.01800720288115246, 0.01920768307322929, 0.01800720288115246, 0.020008003201280513, 0.020008003201280513, 0.020008003201280513, 0.020008003201280513, 0.020008003201280513, 0.020008003201280513, 0.021208483393357343, 0.021208483393357343, 0.021608643457382955, 0.022008803521408563, 0.022809123649459785, 0.025610244097639057, 0.03241296518607443, 0.2777110844337735], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Lipase_GDSL_3.gap.json b/pfam_gap_rates/Lipase_GDSL_3.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f9563b62606bdc1cfe653d2ddbd5a84538947e61
--- /dev/null
+++ b/pfam_gap_rates/Lipase_GDSL_3.gap.json
@@ -0,0 +1 @@
+{"family": "Lipase_GDSL_3", "n_seqs": 173, "length": 185, "gap_rates": [0.7745664739884393, 0.5144508670520231, 0.4046242774566474, 0.3988439306358382, 0.24277456647398843, 0.2023121387283237, 0.028901734104046242, 0.028901734104046242, 0.028901734104046242, 0.028901734104046242, 0.028901734104046242, 0.028901734104046242, 0.028901734104046242, 0.03468208092485549, 0.028901734104046242, 0.028901734104046242, 0.028901734104046242, 0.023121387283236993, 0.023121387283236993, 0.023121387283236993, 0.023121387283236993, 0.023121387283236993, 0.023121387283236993, 0.023121387283236993, 0.023121387283236993, 0.023121387283236993, 0.028901734104046242, 0.028901734104046242, 0.023121387283236993, 0.023121387283236993, 0.023121387283236993, 0.023121387283236993, 0.023121387283236993, 0.023121387283236993, 0.023121387283236993, 0.023121387283236993, 0.023121387283236993, 0.023121387283236993, 0.023121387283236993, 0.023121387283236993, 0.023121387283236993, 0.023121387283236993, 0.023121387283236993, 0.023121387283236993, 0.023121387283236993, 0.023121387283236993, 0.023121387283236993, 0.023121387283236993, 0.023121387283236993, 0.023121387283236993, 0.023121387283236993, 0.023121387283236993, 0.023121387283236993, 0.023121387283236993, 0.023121387283236993, 0.023121387283236993, 0.023121387283236993, 0.023121387283236993, 0.023121387283236993, 0.028901734104046242, 0.8554913294797688, 0.028901734104046242, 0.028901734104046242, 0.028901734104046242, 0.028901734104046242, 0.028901734104046242, 0.028901734104046242, 0.028901734104046242, 0.028901734104046242, 0.028901734104046242, 0.028901734104046242, 0.43352601156069365, 0.5202312138728323, 0.6069364161849711, 0.5664739884393064, 0.44508670520231214, 0.30057803468208094, 0.028901734104046242, 0.028901734104046242, 0.028901734104046242, 0.028901734104046242, 0.028901734104046242, 0.028901734104046242, 0.028901734104046242, 0.028901734104046242, 0.028901734104046242, 0.023121387283236993, 0.023121387283236993, 0.023121387283236993, 0.023121387283236993, 0.023121387283236993, 0.023121387283236993, 0.023121387283236993, 0.023121387283236993, 0.028901734104046242, 0.023121387283236993, 0.017341040462427744, 0.017341040462427744, 0.10982658959537572, 0.03468208092485549, 0.023121387283236993, 0.023121387283236993, 0.023121387283236993, 0.023121387283236993, 0.023121387283236993, 0.023121387283236993, 0.046242774566473986, 0.30057803468208094, 0.31213872832369943, 0.3236994219653179, 0.3236994219653179, 0.35260115606936415, 0.3468208092485549, 0.3236994219653179, 0.3236994219653179, 0.32947976878612717, 0.31213872832369943, 0.32947976878612717, 0.37572254335260113, 0.3583815028901734, 0.3352601156069364, 0.32947976878612717, 0.31213872832369943, 0.30057803468208094, 0.31213872832369943, 0.2947976878612717, 0.30057803468208094, 0.30057803468208094, 0.28901734104046245, 0.28901734104046245, 0.28901734104046245, 0.28901734104046245, 0.28901734104046245, 0.28901734104046245, 0.2947976878612717, 0.28901734104046245, 0.28901734104046245, 0.28901734104046245, 0.4277456647398844, 0.32947976878612717, 0.32947976878612717, 0.28901734104046245, 0.28901734104046245, 0.2832369942196532, 0.28901734104046245, 0.2832369942196532, 0.2832369942196532, 0.2832369942196532, 0.2832369942196532, 0.2832369942196532, 0.2832369942196532, 0.2832369942196532, 0.2832369942196532, 0.4797687861271676, 0.2947976878612717, 0.2947976878612717, 0.2947976878612717, 0.30057803468208094, 0.2947976878612717, 0.28901734104046245, 0.30057803468208094, 0.30057803468208094, 0.28901734104046245, 0.28901734104046245, 0.28901734104046245, 0.2947976878612717, 0.2947976878612717, 0.2947976878612717, 0.2947976878612717, 0.2947976878612717, 0.2947976878612717, 0.2947976878612717, 0.2947976878612717, 0.2947976878612717, 0.3063583815028902, 0.31213872832369943, 0.3179190751445087, 0.3179190751445087, 0.3179190751445087, 0.3352601156069364, 0.35260115606936415, 0.36416184971098264, 0.3815028901734104, 0.4508670520231214, 0.7976878612716763], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Lipocalin_2.gap.json b/pfam_gap_rates/Lipocalin_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..9802776f551fc443bc92bf1035d85e94ed8ecda0
--- /dev/null
+++ b/pfam_gap_rates/Lipocalin_2.gap.json
@@ -0,0 +1 @@
+{"family": "Lipocalin_2", "n_seqs": 691, "length": 163, "gap_rates": [0.44283646888567296, 0.191027496382055, 0.13024602026049203, 0.07959479015918958, 0.059334298118668596, 0.05065123010130246, 0.04341534008683068, 0.04341534008683068, 0.041968162083936326, 0.041968162083936326, 0.04052098408104197, 0.04052098408104197, 0.04052098408104197, 0.041968162083936326, 0.04341534008683068, 0.04052098408104197, 0.04630969609261939, 0.041968162083936326, 0.03907380607814761, 0.03907380607814761, 0.03907380607814761, 0.7814761215629522, 0.04052098408104197, 0.041968162083936326, 0.04341534008683068, 0.0694645441389291, 0.05788712011577424, 0.04341534008683068, 0.03907380607814761, 0.0361794500723589, 0.0361794500723589, 0.0361794500723589, 0.0361794500723589, 0.03762662807525326, 0.04341534008683068, 0.05065123010130246, 0.04052098408104197, 0.04052098408104197, 0.8842257597684515, 0.0361794500723589, 0.03328509406657019, 0.03328509406657019, 0.03328509406657019, 0.03328509406657019, 0.03328509406657019, 0.03328509406657019, 0.03328509406657019, 0.0361794500723589, 0.18813314037626627, 0.8118668596237337, 0.4804630969609262, 0.04052098408104197, 0.0361794500723589, 0.03473227206946455, 0.9377713458755427, 0.05499276410998553, 0.0361794500723589, 0.03473227206946455, 0.03183791606367583, 0.030390738060781478, 0.03183791606367583, 0.03183791606367583, 0.030390738060781478, 0.030390738060781478, 0.03328509406657019, 0.03183791606367583, 0.03328509406657019, 0.03328509406657019, 0.1085383502170767, 0.10564399421128799, 0.16353111432706222, 0.9305354558610709, 0.8104196816208393, 0.08827785817655572, 0.06222865412445731, 0.03907380607814761, 0.03473227206946455, 0.03328509406657019, 0.03183791606367583, 0.03473227206946455, 0.03183791606367583, 0.03183791606367583, 0.03183791606367583, 0.573082489146165, 0.5455861070911722, 0.4515195369030391, 0.7062228654124457, 0.7771345875542692, 0.9435600578871202, 0.9479015918958031, 0.9261939218523878, 0.7467438494934877, 0.6714905933429812, 0.06222865412445731, 0.03473227206946455, 0.02894356005788712, 0.02604920405209841, 0.02170767004341534, 0.02170767004341534, 0.02170767004341534, 0.020260492040520984, 0.03183791606367583, 0.04052098408104197, 0.02604920405209841, 0.024602026049204053, 0.023154848046309694, 0.02604920405209841, 0.6903039073806078, 0.03183791606367583, 0.03762662807525326, 0.03473227206946455, 0.02894356005788712, 0.03183791606367583, 0.03328509406657019, 0.03762662807525326, 0.03762662807525326, 0.03907380607814761, 0.9088277858176556, 0.9131693198263386, 0.9421128798842258, 0.9088277858176556, 0.9088277858176556, 0.04486251808972504, 0.04052098408104197, 0.041968162083936326, 0.03907380607814761, 0.03907380607814761, 0.03907380607814761, 0.04052098408104197, 0.041968162083936326, 0.041968162083936326, 0.04341534008683068, 0.04341534008683068, 0.05065123010130246, 0.05788712011577424, 0.07525325615050651, 0.06512301013024602, 0.06657018813314038, 0.06657018813314038, 0.07380607814761216, 0.08104196816208394, 0.08972503617945007, 0.09840810419681621, 0.10274963820549927, 0.11287988422575977, 0.11866859623733719, 0.12156295224312591, 0.12590448625180897, 0.1345875542691751, 0.14327062228654125, 0.1548480463096961, 0.15918958031837915, 0.1678726483357453, 0.17945007235890015, 0.19247467438494936, 0.19971056439942114, 0.20549927641099855, 0.21128798842257598, 0.24312590448625182, 0.26049204052098407, 0.31982633863965265, 0.42981186685962375, 0.6439942112879884], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Lipocalin_9.gap.json b/pfam_gap_rates/Lipocalin_9.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..0998bd85fe6b46d16203379817e19a544316c094
--- /dev/null
+++ b/pfam_gap_rates/Lipocalin_9.gap.json
@@ -0,0 +1 @@
+{"family": "Lipocalin_9", "n_seqs": 275, "length": 143, "gap_rates": [0.5054545454545455, 0.3381818181818182, 0.24727272727272728, 0.17454545454545456, 0.12363636363636364, 0.08, 0.04363636363636364, 0.02909090909090909, 0.02181818181818182, 0.02181818181818182, 0.02181818181818182, 0.02181818181818182, 0.01818181818181818, 0.01818181818181818, 0.01818181818181818, 0.01818181818181818, 0.02909090909090909, 0.02181818181818182, 0.01818181818181818, 0.01818181818181818, 0.01818181818181818, 0.01818181818181818, 0.01818181818181818, 0.01818181818181818, 0.02181818181818182, 0.02181818181818182, 0.02181818181818182, 0.9418181818181818, 0.9490909090909091, 0.9418181818181818, 0.02181818181818182, 0.04, 0.04, 0.05454545454545454, 0.04727272727272727, 0.39636363636363636, 0.3418181818181818, 0.27636363636363637, 0.11272727272727273, 0.04, 0.49454545454545457, 0.3018181818181818, 0.014545454545454545, 0.007272727272727273, 0.01090909090909091, 0.007272727272727273, 0.02909090909090909, 0.01818181818181818, 0.014545454545454545, 0.014545454545454545, 0.01818181818181818, 0.03272727272727273, 0.02909090909090909, 0.02909090909090909, 0.02909090909090909, 0.05090909090909091, 0.04727272727272727, 0.03636363636363636, 0.025454545454545455, 0.02181818181818182, 0.014545454545454545, 0.007272727272727273, 0.007272727272727273, 0.01090909090909091, 0.01090909090909091, 0.01090909090909091, 0.22181818181818183, 0.09818181818181818, 0.06545454545454546, 0.22545454545454546, 0.05454545454545454, 0.08363636363636363, 0.02181818181818182, 0.01818181818181818, 0.01090909090909091, 0.01090909090909091, 0.01090909090909091, 0.01090909090909091, 0.01090909090909091, 0.014545454545454545, 0.014545454545454545, 0.014545454545454545, 0.014545454545454545, 0.014545454545454545, 0.014545454545454545, 0.01818181818181818, 0.22181818181818183, 0.2290909090909091, 0.04, 0.06545454545454546, 0.014545454545454545, 0.007272727272727273, 0.0036363636363636364, 0.0036363636363636364, 0.0036363636363636364, 0.0036363636363636364, 0.0036363636363636364, 0.0036363636363636364, 0.0036363636363636364, 0.0036363636363636364, 0.0036363636363636364, 0.0036363636363636364, 0.0036363636363636364, 0.025454545454545455, 0.5054545454545455, 0.610909090909091, 0.5236363636363637, 0.48, 0.02181818181818182, 0.025454545454545455, 0.007272727272727273, 0.01090909090909091, 0.014545454545454545, 0.01090909090909091, 0.007272727272727273, 0.007272727272727273, 0.01090909090909091, 0.01090909090909091, 0.01090909090909091, 0.01090909090909091, 0.68, 0.9309090909090909, 0.5454545454545454, 0.4, 0.4509090909090909, 0.11636363636363636, 0.09090909090909091, 0.03272727272727273, 0.8363636363636363, 0.8545454545454545, 0.6581818181818182, 0.014545454545454545, 0.02181818181818182, 0.02181818181818182, 0.02181818181818182, 0.02909090909090909, 0.04, 0.04363636363636364, 0.04727272727272727, 0.08727272727272728, 0.15272727272727274, 0.16727272727272727, 0.2109090909090909], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Lipoprotein_17.gap.json b/pfam_gap_rates/Lipoprotein_17.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..456558916a431d789012a5e9e1680f8d5def6651
--- /dev/null
+++ b/pfam_gap_rates/Lipoprotein_17.gap.json
@@ -0,0 +1 @@
+{"family": "Lipoprotein_17", "n_seqs": 403, "length": 139, "gap_rates": [0.8858560794044665, 0.7369727047146402, 0.6575682382133995, 0.5806451612903226, 0.5136476426799007, 0.9057071960297767, 0.8287841191066998, 0.5012406947890818, 0.4044665012406948, 0.33002481389578164, 0.2655086848635236, 0.2555831265508685, 0.22084367245657568, 0.20099255583126552, 0.20099255583126552, 0.19106699751861042, 0.1662531017369727, 0.8213399503722084, 0.9156327543424317, 0.8709677419354839, 0.6898263027295285, 0.08436724565756824, 0.052109181141439205, 0.04714640198511166, 0.04218362282878412, 0.03722084367245657, 0.03722084367245657, 0.04218362282878412, 0.034739454094292806, 0.03225806451612903, 0.9478908188585607, 0.02729528535980149, 0.02977667493796526, 0.03722084367245657, 0.03225806451612903, 0.10421836228287841, 0.9057071960297767, 0.5285359801488834, 0.5161290322580645, 0.6426799007444168, 0.7096774193548387, 0.8337468982630273, 0.9057071960297767, 0.9478908188585607, 0.9255583126550868, 0.8833746898263027, 0.7841191066997518, 0.6699751861042184, 0.5930521091811415, 0.15384615384615385, 0.1513647642679901, 0.141439205955335, 0.11166253101736973, 0.09429280397022333, 0.13895781637717122, 0.12655086848635236, 0.03970223325062035, 0.03722084367245657, 0.02729528535980149, 0.017369727047146403, 0.019851116625310174, 0.009925558312655087, 0.004962779156327543, 0.007444168734491315, 0.004962779156327543, 0.8039702233250621, 0.8858560794044665, 0.9305210918114144, 0.9354838709677419, 0.9330024813895782, 0.9106699751861043, 0.8486352357320099, 0.7642679900744417, 0.04218362282878412, 0.11910669975186104, 0.13647642679900746, 0.13895781637717122, 0.9081885856079405, 0.3200992555831266, 0.6054590570719603, 0.8684863523573201, 0.9205955334987593, 0.9454094292803971, 0.8982630272952854, 0.7791563275434243, 0.5186104218362283, 0.004962779156327543, 0.0024813895781637717, 0.0024813895781637717, 0.0024813895781637717, 0.0024813895781637717, 0.0024813895781637717, 0.0024813895781637717, 0.0024813895781637717, 0.007444168734491315, 0.007444168734491315, 0.007444168734491315, 0.009925558312655087, 0.01240694789081886, 0.007444168734491315, 0.5607940446650124, 0.7419354838709677, 0.8461538461538461, 0.9230769230769231, 0.9454094292803971, 0.8684863523573201, 0.8039702233250621, 0.6923076923076923, 0.5062034739454094, 0.02729528535980149, 0.09429280397022333, 0.10421836228287841, 0.11662531017369727, 0.9379652605459057, 0.18362282878411912, 0.08684863523573201, 0.6153846153846154, 0.7568238213399504, 0.8808933002481389, 0.913151364764268, 0.9354838709677419, 0.9478908188585607, 0.9205955334987593, 0.8982630272952854, 0.8312655086848635, 0.6724565756823822, 0.5781637717121588, 0.08436724565756824, 0.09925558312655088, 0.09925558312655088, 0.10421836228287841, 0.10669975186104218, 0.12158808933002481, 0.13895781637717122, 0.17369727047146402, 0.18610421836228289, 0.19106699751861042, 0.23821339950372208, 0.4739454094292804], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/LolA.gap.json b/pfam_gap_rates/LolA.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b27604c0052c5a9914380a492818018a9a430f2a
--- /dev/null
+++ b/pfam_gap_rates/LolA.gap.json
@@ -0,0 +1 @@
+{"family": "LolA", "n_seqs": 943, "length": 174, "gap_rates": [0.47720042417815484, 0.2608695652173913, 0.18875927889713678, 0.1420996818663839, 0.10922587486744433, 0.0975609756097561, 0.09331919406150584, 0.09013785790031813, 0.09013785790031813, 0.09013785790031813, 0.08907741251325557, 0.08695652173913043, 0.08589607635206786, 0.08377518557794274, 0.08271474019088017, 0.08059384941675504, 0.0816542948038176, 0.3796394485683987, 0.33828207847295866, 0.30116648992576883, 0.28525980911983034, 0.27465535524920465, 0.053022269353128315, 0.041357370095440084, 0.04029692470837752, 0.03923647932131495, 0.03711558854718982, 0.03711558854718982, 0.03817603393425239, 0.03711558854718982, 0.05408271474019088, 0.051961823966065745, 0.042417815482502653, 0.02863202545068929, 0.02863202545068929, 0.02545068928950159, 0.02545068928950159, 0.024390243902439025, 0.02545068928950159, 0.024390243902439025, 0.02332979851537646, 0.026511134676564158, 0.10922587486744433, 0.08377518557794274, 0.08377518557794274, 0.022269353128313893, 0.02014846235418876, 0.019088016967126194, 0.013785790031813362, 0.005302226935312832, 0.006362672322375398, 0.006362672322375398, 0.005302226935312832, 0.005302226935312832, 0.006362672322375398, 0.006362672322375398, 0.007423117709437964, 0.007423117709437964, 0.007423117709437964, 0.006362672322375398, 0.008483563096500531, 0.009544008483563097, 0.007423117709437964, 0.007423117709437964, 0.007423117709437964, 0.9427359490986215, 0.26935312831389185, 0.24284199363732767, 0.23966065747614, 0.18451749734888653, 0.9098621420996819, 0.8621420996818664, 0.016967126193001062, 0.012725344644750796, 0.014846235418875928, 0.015906680805938492, 0.014846235418875928, 0.02545068928950159, 0.032873806998939555, 0.036055143160127257, 0.030752916224814422, 0.027571580063626724, 0.027571580063626724, 0.026511134676564158, 0.029692470837751856, 0.032873806998939555, 0.9225874867444327, 0.897136797454931, 0.2757158006362672, 0.06362672322375397, 0.042417815482502653, 0.04029692470837752, 0.030752916224814422, 0.030752916224814422, 0.032873806998939555, 0.029692470837751856, 0.029692470837751856, 0.03817603393425239, 0.030752916224814422, 0.029692470837751856, 0.032873806998939555, 0.8907741251325557, 0.3955461293743372, 0.19724284199363734, 0.16861081654294804, 0.15164369034994699, 0.12089077412513255, 0.03499469777306469, 0.036055143160127257, 0.03817603393425239, 0.04029692470837752, 0.03817603393425239, 0.03711558854718982, 0.03711558854718982, 0.036055143160127257, 0.036055143160127257, 0.036055143160127257, 0.03923647932131495, 0.9289501590668081, 0.8663838812301167, 0.26299045599151644, 0.05620360551431601, 0.04559915164369035, 0.041357370095440084, 0.03817603393425239, 0.03817603393425239, 0.041357370095440084, 0.036055143160127257, 0.03711558854718982, 0.03817603393425239, 0.03499469777306469, 0.03711558854718982, 0.03711558854718982, 0.14634146341463414, 0.04665959703075292, 0.03923647932131495, 0.03923647932131495, 0.1728525980911983, 0.4867444326617179, 0.043478260869565216, 0.042417815482502653, 0.042417815482502653, 0.044538706256627786, 0.042417815482502653, 0.042417815482502653, 0.042417815482502653, 0.042417815482502653, 0.042417815482502653, 0.042417815482502653, 0.04665959703075292, 0.04559915164369035, 0.043478260869565216, 0.043478260869565216, 0.043478260869565216, 0.043478260869565216, 0.043478260869565216, 0.04559915164369035, 0.05090137857900318, 0.05514316012725345, 0.05832449628844114, 0.06574761399787911, 0.15058324496288442, 0.09013785790031813, 0.09437963944856839, 0.10180275715800637, 0.10922587486744433, 0.11664899257688228, 0.12513255567338283, 0.13361611876988336, 0.14952279957582185, 0.15164369034994699, 0.1728525980911983, 0.2735949098621421, 0.630965005302227], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Lon_C.gap.json b/pfam_gap_rates/Lon_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..edf6d6531894121d60c9026ac68632f62b922fbc
--- /dev/null
+++ b/pfam_gap_rates/Lon_C.gap.json
@@ -0,0 +1 @@
+{"family": "Lon_C", "n_seqs": 3920, "length": 218, "gap_rates": [0.48316326530612247, 0.45051020408163267, 0.4357142857142857, 0.42346938775510207, 0.4191326530612245, 0.4181122448979592, 0.4163265306122449, 0.4153061224489796, 0.41403061224489796, 0.41403061224489796, 0.4135204081632653, 0.4125, 0.41096938775510206, 0.40816326530612246, 0.4030612244897959, 0.4002551020408163, 0.3979591836734694, 0.38698979591836735, 0.3732142857142857, 0.3665816326530612, 0.3780612244897959, 0.363265306122449, 0.3479591836734694, 0.3433673469387755, 0.3410714285714286, 0.34030612244897956, 0.34005102040816326, 0.34005102040816326, 0.3392857142857143, 0.33903061224489794, 0.3385204081632653, 0.3380102040816326, 0.3380102040816326, 0.338265306122449, 0.3380102040816326, 0.3375, 0.3357142857142857, 0.33418367346938777, 0.9471938775510204, 0.33316326530612245, 0.33137755102040817, 0.3224489795918367, 0.3183673469387755, 0.3153061224489796, 0.31454081632653064, 0.31326530612244896, 0.31301020408163266, 0.3127551020408163, 0.3137755102040816, 0.31581632653061226, 0.3170918367346939, 0.8826530612244898, 0.9426020408163265, 0.8964285714285715, 0.8619897959183673, 0.3155612244897959, 0.3137755102040816, 0.3127551020408163, 0.31479591836734694, 0.3127551020408163, 0.3125, 0.3127551020408163, 0.3122448979591837, 0.3122448979591837, 0.31326530612244896, 0.3114795918367347, 0.31173469387755104, 0.3137755102040816, 0.3181122448979592, 0.31505102040816324, 0.3107142857142857, 0.3051020408163265, 0.3051020408163265, 0.30612244897959184, 0.3053571428571429, 0.30459183673469387, 0.3038265306122449, 0.30357142857142855, 0.30357142857142855, 0.30459183673469387, 0.30459183673469387, 0.3040816326530612, 0.30433673469387756, 0.30714285714285716, 0.3107142857142857, 0.3224489795918367, 0.3306122448979592, 0.3339285714285714, 0.32933673469387753, 0.32831632653061227, 0.32576530612244897, 0.3410714285714286, 0.3413265306122449, 0.32857142857142857, 0.3081632653061224, 0.3155612244897959, 0.2885204081632653, 0.2808673469387755, 0.275765306122449, 0.27372448979591835, 0.2724489795918367, 0.27040816326530615, 0.26964285714285713, 0.26913265306122447, 0.2714285714285714, 0.2938775510204082, 0.26607142857142857, 0.2556122448979592, 0.27066326530612245, 0.2558673469387755, 0.24642857142857144, 0.09846938775510204, 0.031377551020408165, 0.02857142857142857, 0.027551020408163266, 0.026020408163265306, 0.026020408163265306, 0.026275510204081632, 0.026020408163265306, 0.027551020408163266, 0.02729591836734694, 0.02576530612244898, 0.02576530612244898, 0.024489795918367346, 0.024744897959183672, 0.02423469387755102, 0.024489795918367346, 0.02423469387755102, 0.02423469387755102, 0.024489795918367346, 0.025, 0.025255102040816328, 0.024744897959183672, 0.025510204081632654, 0.9497448979591837, 0.024744897959183672, 0.025255102040816328, 0.02423469387755102, 0.02423469387755102, 0.023724489795918367, 0.02346938775510204, 0.023214285714285715, 0.023214285714285715, 0.023724489795918367, 0.023979591836734693, 0.024489795918367346, 0.023724489795918367, 0.023979591836734693, 0.02346938775510204, 0.02423469387755102, 0.026275510204081632, 0.026020408163265306, 0.026530612244897958, 0.026275510204081632, 0.026530612244897958, 0.02729591836734694, 0.027551020408163266, 0.02729591836734694, 0.02806122448979592, 0.02857142857142857, 0.9298469387755102, 0.9369897959183674, 0.9403061224489796, 0.9298469387755102, 0.9298469387755102, 0.029336734693877552, 0.03086734693877551, 0.03010204081632653, 0.030357142857142857, 0.030357142857142857, 0.03163265306122449, 0.031377551020408165, 0.03086734693877551, 0.03163265306122449, 0.03239795918367347, 0.03239795918367347, 0.03214285714285714, 0.0336734693877551, 0.0336734693877551, 0.03826530612244898, 0.042091836734693876, 0.048214285714285716, 0.0635204081632653, 0.07755102040816327, 0.08852040816326531, 0.10331632653061225, 0.898469387755102, 0.8997448979591837, 0.8484693877551021, 0.12346938775510204, 0.14974489795918366, 0.15025510204081632, 0.1405612244897959, 0.13954081632653062, 0.14744897959183673, 0.1471938775510204, 0.1510204081632653, 0.1357142857142857, 0.9418367346938775, 0.11683673469387755, 0.11530612244897959, 0.11658163265306122, 0.11811224489795918, 0.11836734693877551, 0.12091836734693878, 0.12244897959183673, 0.12627551020408162, 0.1278061224489796, 0.12908163265306122, 0.13316326530612244, 0.13801020408163264, 0.1576530612244898, 0.1704081632653061, 0.2135204081632653, 0.3022959183673469, 0.36147959183673467, 0.4301020408163265, 0.6441326530612245], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/LpxD.gap.json b/pfam_gap_rates/LpxD.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..bb3470453a557c3631a7ed6301379894c6399406
--- /dev/null
+++ b/pfam_gap_rates/LpxD.gap.json
@@ -0,0 +1 @@
+{"family": "LpxD", "n_seqs": 920, "length": 73, "gap_rates": [0.7304347826086957, 0.3239130434782609, 0.09347826086956522, 0.04565217391304348, 0.02391304347826087, 0.010869565217391304, 0.006521739130434782, 0.006521739130434782, 0.006521739130434782, 0.005434782608695652, 0.004347826086956522, 0.004347826086956522, 0.004347826086956522, 0.003260869565217391, 0.002173913043478261, 0.002173913043478261, 0.002173913043478261, 0.002173913043478261, 0.002173913043478261, 0.002173913043478261, 0.002173913043478261, 0.0010869565217391304, 0.02282608695652174, 0.0, 0.0010869565217391304, 0.003260869565217391, 0.007608695652173913, 0.004347826086956522, 0.002173913043478261, 0.0010869565217391304, 0.0010869565217391304, 0.0, 0.005434782608695652, 0.003260869565217391, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.011956521739130435, 0.002173913043478261, 0.0, 0.0010869565217391304, 0.010869565217391304, 0.016304347826086956, 0.042391304347826085, 0.04021739130434782, 0.05543478260869565, 0.05543478260869565, 0.0967391304347826, 0.3815217391304348, 0.33369565217391306, 0.8804347826086957, 0.9108695652173913, 0.866304347826087, 0.003260869565217391, 0.003260869565217391, 0.003260869565217391, 0.003260869565217391, 0.003260869565217391, 0.003260869565217391, 0.004347826086956522, 0.004347826086956522, 0.005434782608695652, 0.005434782608695652, 0.007608695652173913, 0.011956521739130435, 0.016304347826086956, 0.05326086956521739, 0.1641304347826087, 0.6663043478260869], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Lustrin_cystein.gap.json b/pfam_gap_rates/Lustrin_cystein.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..2720833663ad10d3f25940fff5aa8480fb764539
--- /dev/null
+++ b/pfam_gap_rates/Lustrin_cystein.gap.json
@@ -0,0 +1 @@
+{"family": "Lustrin_cystein", "n_seqs": 1654, "length": 54, "gap_rates": [0.6952841596130592, 0.094316807738815, 0.11003627569528417, 0.0912938331318017, 0.07920193470374849, 0.07194679564691657, 0.5888754534461911, 0.06892382103990327, 0.07557436517533253, 0.07376058041112454, 0.06650544135429262, 0.8851269649334945, 0.15900846432889965, 0.11064087061668681, 0.8833131801692866, 0.046553808948004836, 0.034461910519951636, 0.03325272067714631, 0.900241837968561, 0.009068923821039904, 0.006045949214026602, 0.005441354292623942, 0.005441354292623942, 0.005441354292623942, 0.24486094316807738, 0.8016928657799275, 0.9153567110036276, 0.49274486094316805, 0.04836759371221282, 0.003022974607013301, 0.0018137847642079807, 0.0, 0.0, 0.0, 0.0, 0.0006045949214026602, 0.0012091898428053204, 0.0018137847642079807, 0.939540507859734, 0.9244256348246674, 0.11185006045949214, 0.09975816203143893, 0.09008464328899637, 0.9165659008464329, 0.08887545344619105, 0.042926239419588876, 0.021160822249093107, 0.012696493349455865, 0.013905683192261185, 0.016324062877871828, 0.018137847642079808, 0.018742442563482467, 0.02176541717049577, 0.36275695284159615], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Ly-6_related.gap.json b/pfam_gap_rates/Ly-6_related.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..baefc5e705a1fdd72b6977ac4a3b3ae1a5b579fb
--- /dev/null
+++ b/pfam_gap_rates/Ly-6_related.gap.json
@@ -0,0 +1 @@
+{"family": "Ly-6_related", "n_seqs": 167, "length": 137, "gap_rates": [0.38323353293413176, 0.2754491017964072, 0.2754491017964072, 0.2754491017964072, 0.2694610778443114, 0.2694610778443114, 0.2694610778443114, 0.2694610778443114, 0.25748502994011974, 0.25748502994011974, 0.25748502994011974, 0.2634730538922156, 0.7784431137724551, 0.9341317365269461, 0.7305389221556886, 0.25149700598802394, 0.24550898203592814, 0.2215568862275449, 0.19161676646706588, 0.17964071856287425, 0.16167664670658682, 0.16766467065868262, 0.15568862275449102, 0.1437125748502994, 0.19760479041916168, 0.12574850299401197, 0.12574850299401197, 0.11976047904191617, 0.11377245508982035, 0.11377245508982035, 0.11377245508982035, 0.11377245508982035, 0.11377245508982035, 0.11377245508982035, 0.19161676646706588, 0.18562874251497005, 0.6047904191616766, 0.08383233532934131, 0.08383233532934131, 0.08383233532934131, 0.07784431137724551, 0.07784431137724551, 0.07784431137724551, 0.07784431137724551, 0.07784431137724551, 0.07784431137724551, 0.9221556886227545, 0.8203592814371258, 0.07784431137724551, 0.07784431137724551, 0.0718562874251497, 0.0718562874251497, 0.0718562874251497, 0.0718562874251497, 0.0718562874251497, 0.0718562874251497, 0.0718562874251497, 0.10179640718562874, 0.11976047904191617, 0.10778443113772455, 0.1317365269461078, 0.1317365269461078, 0.16167664670658682, 0.1377245508982036, 0.17964071856287425, 0.16766467065868262, 0.24550898203592814, 0.38323353293413176, 0.8922155688622755, 0.8922155688622755, 0.7784431137724551, 0.1497005988023952, 0.1497005988023952, 0.1497005988023952, 0.15568862275449102, 0.15568862275449102, 0.15568862275449102, 0.1497005988023952, 0.1497005988023952, 0.1497005988023952, 0.16766467065868262, 0.16766467065868262, 0.1497005988023952, 0.15568862275449102, 0.17964071856287425, 0.16766467065868262, 0.7245508982035929, 0.6706586826347305, 0.47305389221556887, 0.25748502994011974, 0.2275449101796407, 0.20359281437125748, 0.19161676646706588, 0.19161676646706588, 0.2874251497005988, 0.20359281437125748, 0.19161676646706588, 0.20359281437125748, 0.18562874251497005, 0.19760479041916168, 0.2994011976047904, 0.18562874251497005, 0.18562874251497005, 0.19760479041916168, 0.19161676646706588, 0.18562874251497005, 0.19161676646706588, 0.19760479041916168, 0.2215568862275449, 0.20359281437125748, 0.20359281437125748, 0.20958083832335328, 0.39520958083832336, 0.3652694610778443, 0.8143712574850299, 0.7125748502994012, 0.38922155688622756, 0.3772455089820359, 0.3592814371257485, 0.2874251497005988, 0.25748502994011974, 0.2634730538922156, 0.2694610778443114, 0.2754491017964072, 0.2754491017964072, 0.2694610778443114, 0.2694610778443114, 0.281437125748503, 0.2874251497005988, 0.2934131736526946, 0.2934131736526946, 0.2934131736526946, 0.2994011976047904, 0.2994011976047904, 0.31137724550898205, 0.31137724550898205, 0.874251497005988], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Lyase_8_C.gap.json b/pfam_gap_rates/Lyase_8_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..2b147ab3924c7f7dc3bc152fdc5deea208a23632
--- /dev/null
+++ b/pfam_gap_rates/Lyase_8_C.gap.json
@@ -0,0 +1 @@
+{"family": "Lyase_8_C", "n_seqs": 220, "length": 80, "gap_rates": [0.4590909090909091, 0.2818181818181818, 0.15, 0.1, 0.06818181818181818, 0.04090909090909091, 0.031818181818181815, 0.02727272727272727, 0.02727272727272727, 0.02727272727272727, 0.02727272727272727, 0.02727272727272727, 0.022727272727272728, 0.022727272727272728, 0.022727272727272728, 0.06363636363636363, 0.11363636363636363, 0.004545454545454545, 0.004545454545454545, 0.004545454545454545, 0.004545454545454545, 0.004545454545454545, 0.004545454545454545, 0.004545454545454545, 0.004545454545454545, 0.004545454545454545, 0.004545454545454545, 0.8, 0.7318181818181818, 0.05, 0.03636363636363636, 0.031818181818181815, 0.031818181818181815, 0.3409090909090909, 0.33181818181818185, 0.7272727272727273, 0.8545454545454545, 0.9227272727272727, 0.8863636363636364, 0.8409090909090909, 0.5409090909090909, 0.17272727272727273, 0.16363636363636364, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.004545454545454545, 0.004545454545454545, 0.0, 0.0, 0.0, 0.9045454545454545, 0.95, 0.65, 0.11818181818181818, 0.11363636363636363, 0.022727272727272728, 0.02727272727272727, 0.004545454545454545, 0.004545454545454545, 0.004545454545454545, 0.004545454545454545, 0.004545454545454545, 0.00909090909090909, 0.013636363636363636, 0.013636363636363636, 0.022727272727272728, 0.09545454545454546, 0.1590909090909091, 0.19545454545454546, 0.2590909090909091, 0.30454545454545456, 0.44545454545454544, 0.5681818181818182, 0.8454545454545455], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Lyase_aromatic.gap.json b/pfam_gap_rates/Lyase_aromatic.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..1ac51f403fa5760097e2d013d20fa6bd0c1306ab
--- /dev/null
+++ b/pfam_gap_rates/Lyase_aromatic.gap.json
@@ -0,0 +1 @@
+{"family": "Lyase_aromatic", "n_seqs": 1592, "length": 513, "gap_rates": [0.36683417085427134, 0.228643216080402, 0.18467336683417085, 0.1721105527638191, 0.16520100502512564, 0.16017587939698494, 0.15577889447236182, 0.15326633165829145, 0.1507537688442211, 0.14761306532663315, 0.15829145728643215, 0.15829145728643215, 0.8605527638190955, 0.7883165829145728, 0.1620603015075377, 0.146356783919598, 0.13881909547738694, 0.13756281407035176, 0.135678391959799, 0.1350502512562814, 0.13442211055276382, 0.13442211055276382, 0.1350502512562814, 0.13630653266331658, 0.13379396984924624, 0.13128140703517588, 0.13128140703517588, 0.13128140703517588, 0.1306532663316583, 0.1306532663316583, 0.1306532663316583, 0.1300251256281407, 0.1300251256281407, 0.12876884422110552, 0.12814070351758794, 0.12751256281407036, 0.12751256281407036, 0.12751256281407036, 0.1507537688442211, 0.12751256281407036, 0.12625628140703518, 0.12562814070351758, 0.12939698492462312, 0.13190954773869346, 0.12185929648241206, 0.12185929648241206, 0.12060301507537688, 0.12060301507537688, 0.12060301507537688, 0.12060301507537688, 0.12060301507537688, 0.12060301507537688, 0.1199748743718593, 0.1199748743718593, 0.12060301507537688, 0.12060301507537688, 0.12248743718592965, 0.12248743718592965, 0.12311557788944724, 0.12311557788944724, 0.3297738693467337, 0.32474874371859297, 0.12437185929648241, 0.12248743718592965, 0.12248743718592965, 0.12248743718592965, 0.12185929648241206, 0.12060301507537688, 0.12123115577889447, 0.12248743718592965, 0.11934673366834171, 0.11871859296482412, 0.11934673366834171, 0.11871859296482412, 0.12123115577889447, 0.12123115577889447, 0.12123115577889447, 0.12060301507537688, 0.12060301507537688, 0.12123115577889447, 0.11620603015075377, 0.803391959798995, 0.8203517587939698, 0.8272613065326633, 0.9340452261306532, 0.9378140703517588, 0.9403266331658291, 0.9409547738693468, 0.9453517587939698, 0.9415829145728644, 0.9403266331658291, 0.9390703517587939, 0.9371859296482412, 0.8787688442211056, 0.8209798994974874, 0.8121859296482412, 0.8021356783919598, 0.11557788944723618, 0.11494974874371859, 0.114321608040201, 0.114321608040201, 0.114321608040201, 0.114321608040201, 0.11494974874371859, 0.11494974874371859, 0.11494974874371859, 0.114321608040201, 0.11369346733668342, 0.10615577889447236, 0.10615577889447236, 0.10489949748743718, 0.10615577889447236, 0.10678391959798995, 0.10678391959798995, 0.10678391959798995, 0.10678391959798995, 0.10741206030150753, 0.11055276381909548, 0.1099246231155779, 0.10678391959798995, 0.10678391959798995, 0.10678391959798995, 0.10741206030150753, 0.10741206030150753, 0.10741206030150753, 0.10741206030150753, 0.10741206030150753, 0.10741206030150753, 0.10804020100502512, 0.1092964824120603, 0.10804020100502512, 0.10804020100502512, 0.10741206030150753, 0.10552763819095477, 0.10489949748743718, 0.10489949748743718, 0.10489949748743718, 0.10489949748743718, 0.10615577889447236, 0.10615577889447236, 0.10615577889447236, 0.10678391959798995, 0.10741206030150753, 0.10678391959798995, 0.10741206030150753, 0.10741206030150753, 0.10804020100502512, 0.10804020100502512, 0.10866834170854271, 0.10866834170854271, 0.1092964824120603, 0.19283919597989949, 0.13190954773869346, 0.13128140703517588, 0.1092964824120603, 0.1099246231155779, 0.1092964824120603, 0.1092964824120603, 0.1099246231155779, 0.1092964824120603, 0.10866834170854271, 0.11118090452261306, 0.11180904522613065, 0.11118090452261306, 0.11306532663316583, 0.11243718592964824, 0.11306532663316583, 0.11118090452261306, 0.11243718592964824, 0.11306532663316583, 0.12060301507537688, 0.12374371859296482, 0.9434673366834171, 0.14133165829145727, 0.13316582914572864, 0.7788944723618091, 0.9265075376884422, 0.9428391959798995, 0.9378140703517588, 0.7945979899497487, 0.6978643216080402, 0.12939698492462312, 0.12814070351758794, 0.1306532663316583, 0.12876884422110552, 0.12751256281407036, 0.12751256281407036, 0.12562814070351758, 0.125, 0.12625628140703518, 0.12248743718592965, 0.11871859296482412, 0.11494974874371859, 0.11055276381909548, 0.11055276381909548, 0.11180904522613065, 0.11118090452261306, 0.885678391959799, 0.8592964824120602, 0.1092964824120603, 0.10804020100502512, 0.10678391959798995, 0.10615577889447236, 0.10552763819095477, 0.10489949748743718, 0.10552763819095477, 0.10489949748743718, 0.10489949748743718, 0.10615577889447236, 0.10427135678391959, 0.10113065326633165, 0.10175879396984924, 0.10113065326633165, 0.10175879396984924, 0.10175879396984924, 0.10050251256281408, 0.09987437185929648, 0.0992462311557789, 0.09987437185929648, 0.09987437185929648, 0.0992462311557789, 0.0992462311557789, 0.0992462311557789, 0.09987437185929648, 0.09798994974874371, 0.0986180904522613, 0.0986180904522613, 0.09798994974874371, 0.09798994974874371, 0.09798994974874371, 0.09798994974874371, 0.09736180904522614, 0.09673366834170855, 0.09610552763819095, 0.09673366834170855, 0.09673366834170855, 0.09736180904522614, 0.09736180904522614, 0.09736180904522614, 0.09736180904522614, 0.09736180904522614, 0.09673366834170855, 0.09673366834170855, 0.09673366834170855, 0.09673366834170855, 0.09673366834170855, 0.09484924623115577, 0.09484924623115577, 0.09484924623115577, 0.09547738693467336, 0.09547738693467336, 0.09484924623115577, 0.0935929648241206, 0.09484924623115577, 0.0935929648241206, 0.0935929648241206, 0.09484924623115577, 0.0942211055276382, 0.0942211055276382, 0.09547738693467336, 0.9491206030150754, 0.09610552763819095, 0.09610552763819095, 0.0935929648241206, 0.09296482412060302, 0.09170854271356783, 0.09170854271356783, 0.09233668341708542, 0.09108040201005026, 0.09108040201005026, 0.09170854271356783, 0.09108040201005026, 0.09045226130653267, 0.09045226130653267, 0.08919597989949749, 0.08982412060301508, 0.08919597989949749, 0.08919597989949749, 0.08919597989949749, 0.08919597989949749, 0.08919597989949749, 0.9396984924623115, 0.10866834170854271, 0.10678391959798995, 0.10489949748743718, 0.10238693467336683, 0.26319095477386933, 0.2594221105527638, 0.24057788944723618, 0.7123115577889447, 0.7418341708542714, 0.8153266331658291, 0.9371859296482412, 0.9459798994974874, 0.9384422110552764, 0.9265075376884422, 0.7481155778894473, 0.7342964824120602, 0.6683417085427136, 0.4748743718592965, 0.2556532663316583, 0.10741206030150753, 0.16331658291457288, 0.09296482412060302, 0.09045226130653267, 0.7211055276381909, 0.0885678391959799, 0.0885678391959799, 0.08793969849246232, 0.08793969849246232, 0.08793969849246232, 0.08919597989949749, 0.08919597989949749, 0.09045226130653267, 0.09045226130653267, 0.09045226130653267, 0.08982412060301508, 0.08982412060301508, 0.08919597989949749, 0.09108040201005026, 0.09233668341708542, 0.09233668341708542, 0.09296482412060302, 0.09170854271356783, 0.09233668341708542, 0.09296482412060302, 0.09296482412060302, 0.09296482412060302, 0.09296482412060302, 0.09233668341708542, 0.09296482412060302, 0.09296482412060302, 0.0935929648241206, 0.09233668341708542, 0.09233668341708542, 0.09296482412060302, 0.0935929648241206, 0.0942211055276382, 0.0942211055276382, 0.0935929648241206, 0.09673366834170855, 0.10113065326633165, 0.10238693467336683, 0.10301507537688442, 0.10175879396984924, 0.10050251256281408, 0.10364321608040201, 0.9057788944723618, 0.9478643216080402, 0.9396984924623115, 0.8982412060301508, 0.10427135678391959, 0.2851758793969849, 0.13693467336683418, 0.10741206030150753, 0.10489949748743718, 0.10301507537688442, 0.10113065326633165, 0.0986180904522613, 0.0986180904522613, 0.09987437185929648, 0.09987437185929648, 0.0992462311557789, 0.0992462311557789, 0.0992462311557789, 0.09798994974874371, 0.0992462311557789, 0.0992462311557789, 0.09736180904522614, 0.09673366834170855, 0.09610552763819095, 0.09484924623115577, 0.09108040201005026, 0.09045226130653267, 0.09045226130653267, 0.09045226130653267, 0.09045226130653267, 0.09045226130653267, 0.09045226130653267, 0.09045226130653267, 0.09045226130653267, 0.09045226130653267, 0.08982412060301508, 0.08982412060301508, 0.08982412060301508, 0.08982412060301508, 0.09045226130653267, 0.09108040201005026, 0.09108040201005026, 0.09108040201005026, 0.09108040201005026, 0.09108040201005026, 0.09170854271356783, 0.09108040201005026, 0.09108040201005026, 0.09108040201005026, 0.09045226130653267, 0.09170854271356783, 0.08982412060301508, 0.09045226130653267, 0.48743718592964824, 0.16331658291457288, 0.09484924623115577, 0.09296482412060302, 0.09296482412060302, 0.09296482412060302, 0.09233668341708542, 0.8316582914572864, 0.09233668341708542, 0.6652010050251256, 0.0992462311557789, 0.09736180904522614, 0.09233668341708542, 0.09045226130653267, 0.10552763819095477, 0.09045226130653267, 0.08982412060301508, 0.08982412060301508, 0.09045226130653267, 0.08982412060301508, 0.09045226130653267, 0.08982412060301508, 0.08982412060301508, 0.08919597989949749, 0.08982412060301508, 0.08731155778894473, 0.08731155778894473, 0.08731155778894473, 0.08731155778894473, 0.08731155778894473, 0.08919597989949749, 0.08919597989949749, 0.08919597989949749, 0.08919597989949749, 0.08982412060301508, 0.09045226130653267, 0.08982412060301508, 0.09170854271356783, 0.08982412060301508, 0.09547738693467336, 0.0935929648241206, 0.0935929648241206, 0.09170854271356783, 0.09170854271356783, 0.09170854271356783, 0.09233668341708542, 0.09296482412060302, 0.09296482412060302, 0.0942211055276382, 0.09296482412060302, 0.0935929648241206, 0.09296482412060302, 0.09296482412060302, 0.09233668341708542, 0.09233668341708542, 0.09170854271356783, 0.09233668341708542, 0.09233668341708542, 0.0935929648241206, 0.0942211055276382, 0.09547738693467336, 0.09610552763819095, 0.09610552763819095, 0.09610552763819095, 0.09610552763819095, 0.09610552763819095, 0.09610552763819095, 0.09610552763819095, 0.09673366834170855, 0.09673366834170855, 0.09673366834170855, 0.09736180904522614, 0.09736180904522614, 0.09798994974874371, 0.0992462311557789, 0.09987437185929648, 0.10050251256281408, 0.10050251256281408, 0.10113065326633165, 0.10113065326633165, 0.10113065326633165, 0.10175879396984924, 0.10238693467336683, 0.10238693467336683, 0.10238693467336683, 0.10238693467336683, 0.10364321608040201, 0.10364321608040201, 0.10427135678391959, 0.10678391959798995, 0.10866834170854271, 0.19472361809045227, 0.9359296482412061, 0.7694723618090452, 0.18969849246231155, 0.31909547738693467, 0.20603015075376885, 0.9108040201005025, 0.9340452261306532, 0.7914572864321608, 0.20979899497487436, 0.21545226130653267, 0.22110552763819097, 0.2292713567839196, 0.24937185929648242, 0.2807788944723618, 0.3234924623115578, 0.3391959798994975, 0.353643216080402, 0.3706030150753769, 0.38756281407035176, 0.4202261306532663, 0.6915829145728644], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Lysine_decarbox.gap.json b/pfam_gap_rates/Lysine_decarbox.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f2069294efc04d77ebaec7a16d516b70f46a7ae0
--- /dev/null
+++ b/pfam_gap_rates/Lysine_decarbox.gap.json
@@ -0,0 +1 @@
+{"family": "Lysine_decarbox", "n_seqs": 2731, "length": 158, "gap_rates": [0.10179421457341634, 0.09337239106554375, 0.08861222995239838, 0.08275357012083485, 0.07689491028927133, 0.07323324789454412, 0.06993775173928964, 0.06847308678139875, 0.06590992310508971, 0.9428780666422556, 0.9337239106554376, 0.07140241669718052, 0.07067008421823508, 0.056023434639326256, 0.05272793848407177, 0.046136946173562794, 0.9051629439765654, 0.941047235444892, 0.9432442328817283, 0.9399487367264738, 0.8993042841450019, 0.040278286341999266, 0.039912120102526545, 0.039179787623581104, 0.03771512266569022, 0.3694617356279751, 0.36030757964115706, 0.04357378249725375, 0.04393994873672647, 0.04320761625778103, 0.04320761625778103, 0.05346027096301721, 0.644818747711461, 0.05126327352618089, 0.04357378249725375, 0.061515928231417064, 0.046869278652508235, 0.8853899670450385, 0.9201757597949469, 0.9355547418528012, 0.9498352251922373, 0.9381179055291102, 0.9293299157817649, 0.8989381179055291, 0.8787989747345295, 0.025631636763090444, 0.02929329915781765, 0.02929329915781765, 0.02892713291834493, 0.03149029659465397, 0.03588429146832662, 0.022702306847308677, 0.8934456243134383, 0.8883192969608202, 0.01904064445258147, 0.01904064445258147, 0.01867447821310875, 0.01867447821310875, 0.016843647015745148, 0.014646649578908825, 0.015012815818381545, 0.013914317099963384, 0.013181984621017943, 0.013181984621017943, 0.013181984621017943, 0.012083485902599781, 0.015745148297326986, 0.015012815818381545, 0.010984987184181618, 0.008787989747345295, 0.008421823507872574, 0.008421823507872574, 0.008055657268399853, 0.008055657268399853, 0.008055657268399853, 0.008055657268399853, 0.007323324789454412, 0.007323324789454412, 0.007323324789454412, 0.007689491028927133, 0.008055657268399853, 0.008055657268399853, 0.007689491028927133, 0.006957158549981692, 0.006957158549981692, 0.007323324789454412, 0.007323324789454412, 0.016111314536799707, 0.019772976931526912, 0.020139143170999633, 0.022336140607835956, 0.03185646283412669, 0.0889783961918711, 0.046869278652508235, 0.048700109849871845, 0.047967777370926404, 0.04723544489198096, 0.046503112413035515, 0.04247528377883559, 0.9293299157817649, 0.938484071768583, 0.8868546320029294, 0.04320761625778103, 0.04247528377883559, 0.5415598681801538, 0.04137678506041743, 0.04101061882094471, 0.04137678506041743, 0.04247528377883559, 0.04320761625778103, 0.04393994873672647, 0.19553277187843282, 0.07799340900768949, 0.24057121933357745, 0.906993775173929, 0.9465397290369828, 0.9036982790186745, 0.05236177224459905, 0.04467228121567191, 0.04503844745514463, 0.04760161113145368, 0.04760161113145368, 0.048700109849871845, 0.05053094104723545, 0.06664225558403515, 0.07799340900768949, 0.18051995606005125, 0.7645551080190407, 0.12852435005492494, 0.13291834492859758, 0.11277920175759795, 0.11021603808128891, 0.06444525814719883, 0.061882094470889784, 0.061515928231417064, 0.061515928231417064, 0.061515928231417064, 0.06298059318930795, 0.06481142438667155, 0.06554375686561699, 0.06554375686561699, 0.06590992310508971, 0.9315269132186013, 0.06774075430245331, 0.06883925302087147, 0.06993775173928964, 0.07323324789454412, 0.074697912852435, 0.07616257781032588, 0.07762724276821677, 0.08165507140241669, 0.0889783961918711, 0.09740021969974369, 0.1083852068839253, 0.14134016843647015, 0.2043207616257781, 0.40900768949102895, 0.775906261442695], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/LytR_cpsA_psr.gap.json b/pfam_gap_rates/LytR_cpsA_psr.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..af03464b1e2823d2eb97e32d0a35653c6e989e8a
--- /dev/null
+++ b/pfam_gap_rates/LytR_cpsA_psr.gap.json
@@ -0,0 +1 @@
+{"family": "LytR_cpsA_psr", "n_seqs": 2983, "length": 213, "gap_rates": [0.29332886356017435, 0.062018102581294, 0.05028494803888703, 0.048273550117331546, 0.04391552128729467, 0.039557492457257794, 0.037881327522628225, 0.0372108615487764, 0.03687562856185048, 0.035534696614146835, 0.034528997653369094, 0.034528997653369094, 0.10090512906469996, 0.05833053972510895, 0.0321823667448877, 0.03151190077103587, 0.03151190077103587, 0.030506201810258128, 0.02950050284948039, 0.029165269862554476, 0.029165269862554476, 0.028830036875628563, 0.028159570901776735, 0.02782433791485082, 0.02782433791485082, 0.028159570901776735, 0.02849480388870265, 0.03184713375796178, 0.028159570901776735, 0.08414347971840429, 0.07341602413677506, 0.8186389540730807, 0.8270197787462287, 0.8823332215890044, 0.926248742876299, 0.937981897418706, 0.946027489104928, 0.9356352665102247, 0.9098223265169293, 0.8427757291317466, 0.821656050955414, 0.8183037210861549, 0.04190412336573919, 0.1686221924237345, 0.9477036540395575, 0.7894736842105263, 0.7576265504525646, 0.717398592021455, 0.6728126047603085, 0.46195105598390884, 0.8830036875628562, 0.9175326852162253, 0.9403285283271874, 0.8960777740529668, 0.8716057660073752, 0.1391216895742541, 0.05129064699966477, 0.036205162587998656, 0.0321823667448877, 0.03184713375796178, 0.030170968823332214, 0.028159570901776735, 0.0248072410325176, 0.025812939993295342, 0.026148172980221252, 0.025477707006369428, 0.013744552463962454, 0.7234327857861214, 0.7348307073416024, 0.7914850821320818, 0.8501508548441167, 0.8923902111967817, 0.899430103922226, 0.9198793161247066, 0.9389875963794837, 0.9426751592356688, 0.9322829366409655, 0.9064699966476701, 0.8964130070398927, 0.8786456587328193, 0.8115990613476366, 0.7418706000670466, 0.7281260476030842, 0.7076768354006034, 0.07073416024136775, 0.0124036205162588, 0.0124036205162588, 0.011397921555481059, 0.011397921555481059, 0.011062688568555145, 0.009721756620851492, 0.009721756620851492, 0.009721756620851492, 0.009721756620851492, 0.010056989607777405, 0.010056989607777405, 0.008716057660073752, 0.008716057660073752, 0.009386523633925578, 0.010056989607777405, 0.010056989607777405, 0.01039222259470332, 0.01039222259470332, 0.010056989607777405, 0.009721756620851492, 0.009721756620851492, 0.010056989607777405, 0.009721756620851492, 0.009721756620851492, 0.01039222259470332, 0.01039222259470332, 0.01039222259470332, 0.010727455581629233, 0.010727455581629233, 0.01039222259470332, 0.010056989607777405, 0.01039222259470332, 0.010727455581629233, 0.010727455581629233, 0.011397921555481059, 0.012068387529332886, 0.013744552463962454, 0.013744552463962454, 0.014079785450888367, 0.014079785450888367, 0.015085484411666107, 0.01609118337244385, 0.01609118337244385, 0.016761649346295676, 0.016761649346295676, 0.019778746228628897, 0.10157559503855179, 0.1863895407308079, 0.8310425745893396, 0.8890378813275226, 0.805900100569896, 0.5688903788132752, 0.1813610459269192, 0.151190077103587, 0.028159570901776735, 0.589339591015756, 0.6402950050284948, 0.7267851156553805, 0.7951726449882669, 0.8226617499161918, 0.8384177003017097, 0.8856855514582634, 0.9168622192423734, 0.9366409654710024, 0.9493798189741871, 0.9466979550787797, 0.926248742876299, 0.9057995306738184, 0.8511565538048944, 0.8310425745893396, 0.8152866242038217, 0.7582970164264163, 0.6889037881327522, 0.6024136775058666, 0.5866577271203487, 0.0248072410325176, 0.02313107609788803, 0.019443513241702983, 0.01709688233322159, 0.017767348307073418, 0.01843781428092524, 0.017432115320147504, 0.016426416359369762, 0.016426416359369762, 0.015420717398592021, 0.015420717398592021, 0.015755950385517935, 0.015755950385517935, 0.016761649346295676, 0.017432115320147504, 0.017767348307073418, 0.017767348307073418, 0.018773047267851155, 0.019443513241702983, 0.02179014415018438, 0.022795843110962118, 0.024136775058665773, 0.024136775058665773, 0.024136775058665773, 0.027489104927924907, 0.03989272544418371, 0.41837076768354003, 0.18102581293999329, 0.8531679517264499, 0.9332886356017432, 0.945692256118002, 0.9135098893731143, 0.7475695608447871, 0.029835735836406304, 0.030841434797184042, 0.031176667784109956, 0.0321823667448877, 0.031176667784109956, 0.030841434797184042, 0.031176667784109956, 0.031176667784109956, 0.03151190077103587, 0.03151190077103587, 0.03184713375796178, 0.0321823667448877, 0.03318806570566544, 0.03419376466644318, 0.03687562856185048, 0.04022795843110962, 0.04626215219577606, 0.059336238685886694, 0.15051961112973516, 0.5467650016761649], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/MADF_DNA_bdg.gap.json b/pfam_gap_rates/MADF_DNA_bdg.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..2da7674691c4a0def4658db20c73f5cd2cebefef
--- /dev/null
+++ b/pfam_gap_rates/MADF_DNA_bdg.gap.json
@@ -0,0 +1 @@
+{"family": "MADF_DNA_bdg", "n_seqs": 1255, "length": 105, "gap_rates": [0.21593625498007968, 0.13386454183266933, 0.1147410358565737, 0.1051792828685259, 0.09800796812749003, 0.09083665338645418, 0.08924302788844622, 0.08525896414342629, 0.07888446215139443, 0.07729083665338646, 0.07569721115537849, 0.0749003984063745, 0.07410358565737052, 0.07330677290836653, 0.07091633466135458, 0.07250996015936255, 0.08764940239043825, 0.07808764940239044, 0.0749003984063745, 0.06932270916334661, 0.949003984063745, 0.06294820717131475, 0.06294820717131475, 0.06055776892430279, 0.07888446215139443, 0.05976095617529881, 0.05657370517928287, 0.054183266932270914, 0.05338645418326693, 0.05258964143426295, 0.05179282868525897, 0.05099601593625498, 0.05099601593625498, 0.04940239043824701, 0.050199203187251, 0.05099601593625498, 0.050199203187251, 0.8772908366533865, 0.8916334661354581, 0.847011952191235, 0.05338645418326693, 0.4653386454183267, 0.45338645418326695, 0.09641434262948208, 0.07808764940239044, 0.8231075697211155, 0.896414342629482, 0.9402390438247012, 0.8358565737051793, 0.8167330677290837, 0.09800796812749003, 0.1258964143426295, 0.08605577689243028, 0.9035856573705179, 0.9290836653386454, 0.9410358565737051, 0.9067729083665339, 0.8972111553784861, 0.0701195219123506, 0.07250996015936255, 0.07250996015936255, 0.07410358565737052, 0.0749003984063745, 0.0749003984063745, 0.07569721115537849, 0.07729083665338646, 0.07888446215139443, 0.08127490039840637, 0.08127490039840637, 0.08127490039840637, 0.08286852589641434, 0.08366533864541832, 0.09083665338645418, 0.09243027888446215, 0.09561752988047809, 0.09800796812749003, 0.10278884462151394, 0.10916334661354582, 0.5984063745019921, 0.7960159362549801, 0.9330677290836653, 0.8350597609561753, 0.7322709163346613, 0.48047808764940236, 0.4103585657370518, 0.3745019920318725, 0.31633466135458166, 0.26294820717131473, 0.21434262948207172, 0.19362549800796813, 0.1800796812749004, 0.1752988047808765, 0.17211155378486057, 0.16892430278884463, 0.16892430278884463, 0.1745019920318725, 0.17848605577689244, 0.18087649402390438, 0.18167330677290836, 0.18725099601593626, 0.19203187250996015, 0.199203187250996, 0.21832669322709164, 0.24382470119521912, 0.3569721115537849], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/MAP70.gap.json b/pfam_gap_rates/MAP70.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..93ec5f6ff777cd4ae95b4abb4b232b89d6e97e11
--- /dev/null
+++ b/pfam_gap_rates/MAP70.gap.json
@@ -0,0 +1 @@
+{"family": "MAP70", "n_seqs": 145, "length": 589, "gap_rates": [0.5241379310344828, 0.503448275862069, 0.496551724137931, 0.4896551724137931, 0.4896551724137931, 0.4896551724137931, 0.43448275862068964, 0.3931034482758621, 0.31724137931034485, 0.30344827586206896, 0.296551724137931, 0.296551724137931, 0.296551724137931, 0.296551724137931, 0.296551724137931, 0.296551724137931, 0.296551724137931, 0.296551724137931, 0.296551724137931, 0.296551724137931, 0.2896551724137931, 0.2896551724137931, 0.2896551724137931, 0.2896551724137931, 0.2827586206896552, 0.2827586206896552, 0.27586206896551724, 0.2689655172413793, 0.2689655172413793, 0.2689655172413793, 0.2689655172413793, 0.2689655172413793, 0.2689655172413793, 0.2689655172413793, 0.2689655172413793, 0.2689655172413793, 0.2689655172413793, 0.2689655172413793, 0.2689655172413793, 0.2689655172413793, 0.2689655172413793, 0.2689655172413793, 0.2689655172413793, 0.2689655172413793, 0.2689655172413793, 0.2689655172413793, 0.2689655172413793, 0.2620689655172414, 0.2620689655172414, 0.2620689655172414, 0.2482758620689655, 0.2482758620689655, 0.2482758620689655, 0.2482758620689655, 0.2620689655172414, 0.2689655172413793, 0.2689655172413793, 0.27586206896551724, 0.2896551724137931, 0.2896551724137931, 0.2896551724137931, 0.2482758620689655, 0.2482758620689655, 0.2482758620689655, 0.2482758620689655, 0.2482758620689655, 0.2482758620689655, 0.2482758620689655, 0.25517241379310346, 0.25517241379310346, 0.25517241379310346, 0.25517241379310346, 0.2482758620689655, 0.2482758620689655, 0.2482758620689655, 0.23448275862068965, 0.23448275862068965, 0.23448275862068965, 0.23448275862068965, 0.23448275862068965, 0.23448275862068965, 0.23448275862068965, 0.23448275862068965, 0.23448275862068965, 0.23448275862068965, 0.22758620689655173, 0.22758620689655173, 0.22758620689655173, 0.22758620689655173, 0.23448275862068965, 0.20689655172413793, 0.20689655172413793, 0.20689655172413793, 0.20689655172413793, 0.20689655172413793, 0.20689655172413793, 0.20689655172413793, 0.20689655172413793, 0.20689655172413793, 0.20689655172413793, 0.20689655172413793, 0.20689655172413793, 0.20689655172413793, 0.20689655172413793, 0.20689655172413793, 0.20689655172413793, 0.20689655172413793, 0.20689655172413793, 0.20689655172413793, 0.20689655172413793, 0.20689655172413793, 0.20689655172413793, 0.19310344827586207, 0.19310344827586207, 0.19310344827586207, 0.19310344827586207, 0.19310344827586207, 0.19310344827586207, 0.19310344827586207, 0.19310344827586207, 0.19310344827586207, 0.19310344827586207, 0.19310344827586207, 0.19310344827586207, 0.19310344827586207, 0.19310344827586207, 0.19310344827586207, 0.19310344827586207, 0.19310344827586207, 0.19310344827586207, 0.19310344827586207, 0.19310344827586207, 0.19310344827586207, 0.2, 0.2, 0.20689655172413793, 0.20689655172413793, 0.20689655172413793, 0.20689655172413793, 0.20689655172413793, 0.20689655172413793, 0.20689655172413793, 0.20689655172413793, 0.20689655172413793, 0.2, 0.2, 0.2, 0.2, 0.2, 0.2, 0.2, 0.2, 0.2, 0.2, 0.2, 0.2, 0.2, 0.2, 0.2, 0.2, 0.2, 0.2, 0.2, 0.2, 0.18620689655172415, 0.18620689655172415, 0.18620689655172415, 0.18620689655172415, 0.18620689655172415, 0.18620689655172415, 0.18620689655172415, 0.19310344827586207, 0.19310344827586207, 0.19310344827586207, 0.2, 0.2, 0.20689655172413793, 0.20689655172413793, 0.20689655172413793, 0.20689655172413793, 0.20689655172413793, 0.20689655172413793, 0.20689655172413793, 0.20689655172413793, 0.20689655172413793, 0.20689655172413793, 0.20689655172413793, 0.20689655172413793, 0.20689655172413793, 0.2, 0.18620689655172415, 0.18620689655172415, 0.18620689655172415, 0.18620689655172415, 0.18620689655172415, 0.18620689655172415, 0.18620689655172415, 0.18620689655172415, 0.1793103448275862, 0.1793103448275862, 0.1793103448275862, 0.1793103448275862, 0.1793103448275862, 0.1793103448275862, 0.1793103448275862, 0.1793103448275862, 0.1793103448275862, 0.1793103448275862, 0.1793103448275862, 0.1793103448275862, 0.1793103448275862, 0.1793103448275862, 0.1793103448275862, 0.1793103448275862, 0.1793103448275862, 0.1793103448275862, 0.1793103448275862, 0.1793103448275862, 0.1793103448275862, 0.1793103448275862, 0.1793103448275862, 0.1793103448275862, 0.1793103448275862, 0.1793103448275862, 0.1724137931034483, 0.1724137931034483, 0.1724137931034483, 0.1724137931034483, 0.1724137931034483, 0.1724137931034483, 0.1724137931034483, 0.1724137931034483, 0.1724137931034483, 0.1724137931034483, 0.1724137931034483, 0.1724137931034483, 0.1724137931034483, 0.1724137931034483, 0.16551724137931034, 0.16551724137931034, 0.15862068965517243, 0.15862068965517243, 0.1724137931034483, 0.1724137931034483, 0.1724137931034483, 0.1724137931034483, 0.1724137931034483, 0.1724137931034483, 0.1724137931034483, 0.1724137931034483, 0.1724137931034483, 0.1724137931034483, 0.1724137931034483, 0.1724137931034483, 0.1724137931034483, 0.1724137931034483, 0.1724137931034483, 0.1724137931034483, 0.1724137931034483, 0.1724137931034483, 0.1724137931034483, 0.1724137931034483, 0.1724137931034483, 0.1793103448275862, 0.1724137931034483, 0.1793103448275862, 0.1793103448275862, 0.1793103448275862, 0.1793103448275862, 0.18620689655172415, 0.18620689655172415, 0.18620689655172415, 0.2, 0.2, 0.18620689655172415, 0.1793103448275862, 0.19310344827586207, 0.18620689655172415, 0.18620689655172415, 0.18620689655172415, 0.18620689655172415, 0.1793103448275862, 0.1793103448275862, 0.1793103448275862, 0.18620689655172415, 0.1793103448275862, 0.1793103448275862, 0.1793103448275862, 0.15862068965517243, 0.15862068965517243, 0.15172413793103448, 0.15172413793103448, 0.16551724137931034, 0.15862068965517243, 0.15862068965517243, 0.15862068965517243, 0.15862068965517243, 0.15862068965517243, 0.15862068965517243, 0.15862068965517243, 0.15862068965517243, 0.15862068965517243, 0.15862068965517243, 0.16551724137931034, 0.16551724137931034, 0.16551724137931034, 0.16551724137931034, 0.16551724137931034, 0.16551724137931034, 0.16551724137931034, 0.16551724137931034, 0.16551724137931034, 0.16551724137931034, 0.16551724137931034, 0.16551724137931034, 0.1724137931034483, 0.1793103448275862, 0.18620689655172415, 0.18620689655172415, 0.1793103448275862, 0.1793103448275862, 0.1793103448275862, 0.1793103448275862, 0.1793103448275862, 0.1793103448275862, 0.1793103448275862, 0.18620689655172415, 0.18620689655172415, 0.18620689655172415, 0.18620689655172415, 0.20689655172413793, 0.2, 0.20689655172413793, 0.20689655172413793, 0.21379310344827587, 0.20689655172413793, 0.2413793103448276, 0.2482758620689655, 0.42758620689655175, 0.35172413793103446, 0.31724137931034485, 0.31724137931034485, 0.3103448275862069, 0.2827586206896552, 0.296551724137931, 0.2896551724137931, 0.27586206896551724, 0.2689655172413793, 0.2413793103448276, 0.2482758620689655, 0.23448275862068965, 0.9379310344827586, 0.8620689655172413, 0.2206896551724138, 0.22758620689655173, 0.23448275862068965, 0.2206896551724138, 0.23448275862068965, 0.2620689655172414, 0.35172413793103446, 0.31724137931034485, 0.3103448275862069, 0.32413793103448274, 0.30344827586206896, 0.2827586206896552, 0.22758620689655173, 0.33793103448275863, 0.296551724137931, 0.2206896551724138, 0.21379310344827587, 0.21379310344827587, 0.2413793103448276, 0.22758620689655173, 0.2413793103448276, 0.2206896551724138, 0.2206896551724138, 0.30344827586206896, 0.21379310344827587, 0.21379310344827587, 0.21379310344827587, 0.2206896551724138, 0.23448275862068965, 0.23448275862068965, 0.2206896551724138, 0.2413793103448276, 0.22758620689655173, 0.23448275862068965, 0.22758620689655173, 0.36551724137931035, 0.35172413793103446, 0.4413793103448276, 0.3793103448275862, 0.25517241379310346, 0.896551724137931, 0.9103448275862069, 0.9241379310344827, 0.9241379310344827, 0.9310344827586207, 0.9310344827586207, 0.9379310344827586, 0.9310344827586207, 0.9310344827586207, 0.9241379310344827, 0.9172413793103448, 0.9103448275862069, 0.8896551724137931, 0.22758620689655173, 0.22758620689655173, 0.22758620689655173, 0.22758620689655173, 0.22758620689655173, 0.2206896551724138, 0.22758620689655173, 0.21379310344827587, 0.21379310344827587, 0.21379310344827587, 0.21379310344827587, 0.21379310344827587, 0.21379310344827587, 0.2206896551724138, 0.30344827586206896, 0.9103448275862069, 0.9310344827586207, 0.903448275862069, 0.2206896551724138, 0.23448275862068965, 0.2206896551724138, 0.8068965517241379, 0.9172413793103448, 0.9310344827586207, 0.9310344827586207, 0.8482758620689655, 0.7931034482758621, 0.21379310344827587, 0.21379310344827587, 0.2206896551724138, 0.2206896551724138, 0.21379310344827587, 0.21379310344827587, 0.21379310344827587, 0.21379310344827587, 0.21379310344827587, 0.20689655172413793, 0.21379310344827587, 0.3931034482758621, 0.36551724137931035, 0.3310344827586207, 0.3448275862068966, 0.32413793103448274, 0.30344827586206896, 0.296551724137931, 0.23448275862068965, 0.2206896551724138, 0.2206896551724138, 0.2206896551724138, 0.20689655172413793, 0.8551724137931035, 0.8689655172413793, 0.8827586206896552, 0.9172413793103448, 0.9379310344827586, 0.896551724137931, 0.8758620689655172, 0.8689655172413793, 0.8482758620689655, 0.20689655172413793, 0.21379310344827587, 0.2482758620689655, 0.27586206896551724, 0.2827586206896552, 0.2689655172413793, 0.33793103448275863, 0.33793103448275863, 0.296551724137931, 0.296551724137931, 0.2896551724137931, 0.2620689655172414, 0.9241379310344827, 0.9241379310344827, 0.896551724137931, 0.2827586206896552, 0.2689655172413793, 0.2689655172413793, 0.2689655172413793, 0.25517241379310346, 0.2482758620689655, 0.2482758620689655, 0.2482758620689655, 0.2482758620689655, 0.25517241379310346, 0.25517241379310346, 0.2689655172413793, 0.2689655172413793, 0.2689655172413793, 0.2689655172413793, 0.2689655172413793, 0.2689655172413793, 0.2689655172413793, 0.2689655172413793, 0.2689655172413793, 0.2689655172413793, 0.2689655172413793, 0.2689655172413793, 0.2689655172413793, 0.27586206896551724, 0.27586206896551724, 0.2689655172413793, 0.2689655172413793, 0.2689655172413793, 0.2689655172413793, 0.2689655172413793, 0.2689655172413793, 0.2689655172413793, 0.2689655172413793, 0.2689655172413793, 0.2689655172413793, 0.2689655172413793, 0.2689655172413793, 0.2689655172413793, 0.2689655172413793, 0.2689655172413793, 0.2689655172413793, 0.2689655172413793, 0.2689655172413793, 0.2689655172413793, 0.2689655172413793, 0.2689655172413793, 0.2689655172413793, 0.27586206896551724, 0.2689655172413793, 0.2689655172413793, 0.27586206896551724, 0.27586206896551724, 0.27586206896551724, 0.27586206896551724, 0.27586206896551724, 0.27586206896551724, 0.27586206896551724, 0.27586206896551724, 0.27586206896551724, 0.27586206896551724, 0.27586206896551724, 0.27586206896551724, 0.27586206896551724, 0.27586206896551724, 0.27586206896551724, 0.27586206896551724, 0.27586206896551724, 0.27586206896551724, 0.27586206896551724, 0.27586206896551724, 0.27586206896551724, 0.2827586206896552, 0.2827586206896552, 0.2827586206896552, 0.2827586206896552, 0.2827586206896552, 0.2896551724137931, 0.2896551724137931, 0.2896551724137931, 0.2896551724137931, 0.2896551724137931, 0.2896551724137931, 0.2896551724137931, 0.2896551724137931, 0.296551724137931, 0.296551724137931, 0.296551724137931, 0.296551724137931, 0.30344827586206896, 0.3448275862068966, 0.33793103448275863, 0.32413793103448274, 0.31724137931034485, 0.31724137931034485, 0.32413793103448274, 0.3310344827586207, 0.35172413793103446, 0.3586206896551724, 0.3586206896551724, 0.36551724137931035, 0.3931034482758621, 0.42758620689655175, 0.45517241379310347, 0.503448275862069, 0.5655172413793104, 0.6206896551724138, 0.6689655172413793, 0.696551724137931], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/MBD.gap.json b/pfam_gap_rates/MBD.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d0f4941fb5ddd1c8f4316812a8100d7e5a22d1c9
--- /dev/null
+++ b/pfam_gap_rates/MBD.gap.json
@@ -0,0 +1 @@
+{"family": "MBD", "n_seqs": 803, "length": 78, "gap_rates": [0.937733499377335, 0.8866749688667497, 0.8181818181818182, 0.7471980074719801, 0.676214196762142, 0.5790784557907845, 0.49688667496886674, 0.43088418430884184, 0.33623910336239105, 0.2590286425902864, 0.12204234122042341, 0.074719800747198, 0.06973848069738481, 0.06351183063511831, 0.062266500622665005, 0.06102117061021171, 0.06102117061021171, 0.05977584059775841, 0.05977584059775841, 0.1432129514321295, 0.07721046077210461, 0.05977584059775841, 0.0958904109589041, 0.1232876712328767, 0.20672478206724781, 0.18057285180572852, 0.3138231631382316, 0.9178082191780822, 0.08468244084682441, 0.031133250311332503, 0.021170610211706103, 0.019925280199252802, 0.012453300124533, 0.008717310087173101, 0.0049813200498132005, 0.0012453300124533001, 0.0024906600249066002, 0.0012453300124533001, 0.7247820672478207, 0.0024906600249066002, 0.0024906600249066002, 0.0024906600249066002, 0.0024906600249066002, 0.0024906600249066002, 0.0049813200498132005, 0.0049813200498132005, 0.0049813200498132005, 0.0049813200498132005, 0.0062266500622665, 0.007471980074719801, 0.008717310087173101, 0.0186799501867995, 0.024906600249066, 0.028642590286425903, 0.0361145703611457, 0.053549190535491904, 0.0660024906600249, 0.11581569115815692, 0.34869240348692404, 0.9115815691158157, 0.8816936488169365, 0.6525529265255293, 0.5354919053549191, 0.35990037359900373, 0.34869240348692404, 0.3424657534246575, 0.29140722291407223, 0.298879202988792, 0.3038605230386052, 0.32254047322540474, 0.3287671232876712, 0.33374844333748444, 0.3686176836861768, 0.4396014943960149, 0.5404732254047323, 0.6587795765877957, 0.772104607721046, 0.8555417185554172], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/META.gap.json b/pfam_gap_rates/META.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..869f9f70bd22561a41609957b91b99a91ded227c
--- /dev/null
+++ b/pfam_gap_rates/META.gap.json
@@ -0,0 +1 @@
+{"family": "META", "n_seqs": 842, "length": 129, "gap_rates": [0.7980997624703088, 0.6092636579572447, 0.497624703087886, 0.44061757719714967, 0.3657957244655582, 0.20783847980997625, 0.16864608076009502, 0.15558194774346792, 0.1508313539192399, 0.14845605700712589, 0.1496437054631829, 0.9429928741092637, 0.15558194774346792, 0.1508313539192399, 0.14608076009501186, 0.9382422802850356, 0.1342042755344418, 0.12351543942992874, 0.11045130641330166, 0.10332541567695962, 0.09501187648456057, 0.08432304038004751, 0.0855106888361045, 0.07007125890736342, 0.0688836104513064, 0.12114014251781473, 0.12470308788598575, 0.44536817102137766, 0.5629453681710214, 0.8230403800475059, 0.9370546318289786, 0.9049881235154394, 0.7066508313539193, 0.505938242280285, 0.020190023752969122, 0.0166270783847981, 0.014251781472684086, 0.9489311163895487, 0.7921615201900237, 0.23634204275534443, 0.026128266033254157, 0.020190023752969122, 0.015439429928741092, 0.9429928741092637, 0.838479809976247, 0.009501187648456057, 0.009501187648456057, 0.010688836104513063, 0.007125890736342043, 0.027315914489311165, 0.007125890736342043, 0.007125890736342043, 0.007125890736342043, 0.0023752969121140144, 0.0023752969121140144, 0.0023752969121140144, 0.0023752969121140144, 0.0023752969121140144, 0.0023752969121140144, 0.0035629453681710215, 0.0059382422802850355, 0.0035629453681710215, 0.0059382422802850355, 0.8859857482185273, 0.9358669833729216, 0.7494061757719715, 0.0035629453681710215, 0.0035629453681710215, 0.004750593824228029, 0.0035629453681710215, 0.0023752969121140144, 0.03681710213776722, 0.9394299287410927, 0.009501187648456057, 0.0023752969121140144, 0.0011876484560570072, 0.0011876484560570072, 0.0023752969121140144, 0.0023752969121140144, 0.0023752969121140144, 0.0035629453681710215, 0.0035629453681710215, 0.0059382422802850355, 0.8491686460807601, 0.3752969121140142, 0.3004750593824228, 0.0831353919239905, 0.03800475059382423, 0.03800475059382423, 0.03681710213776722, 0.035629453681710214, 0.035629453681710214, 0.020190023752969122, 0.017814726840855107, 0.015439429928741092, 0.015439429928741092, 0.015439429928741092, 0.017814726840855107, 0.019002375296912115, 0.019002375296912115, 0.019002375296912115, 0.9441805225653207, 0.020190023752969122, 0.02494061757719715, 0.028503562945368172, 0.027315914489311165, 0.029691211401425176, 0.030878859857482184, 0.035629453681710214, 0.03681710213776722, 0.03800475059382423, 0.9038004750593824, 0.7660332541567696, 0.047505938242280284, 0.047505938242280284, 0.0510688836104513, 0.05938242280285035, 0.06769596199524941, 0.12114014251781473, 0.11995249406175772, 0.14726840855106887, 0.19833729216152018, 0.39429928741092635, 0.34085510688836107, 0.35391923990498814, 0.4477434679334917, 0.5629453681710214, 0.6769596199524941, 0.9358669833729216], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/MFS_MOT1.gap.json b/pfam_gap_rates/MFS_MOT1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d15e171edff70abaf1f95b87c1b72ea6646a6040
--- /dev/null
+++ b/pfam_gap_rates/MFS_MOT1.gap.json
@@ -0,0 +1 @@
+{"family": "MFS_MOT1", "n_seqs": 453, "length": 132, "gap_rates": [0.8189845474613686, 0.24724061810154527, 0.10154525386313466, 0.059602649006622516, 0.039735099337748346, 0.039735099337748346, 0.02869757174392936, 0.02869757174392936, 0.02869757174392936, 0.02869757174392936, 0.02869757174392936, 0.5099337748344371, 0.03090507726269316, 0.02869757174392936, 0.02869757174392936, 0.026490066225165563, 0.026490066225165563, 0.026490066225165563, 0.02207505518763797, 0.02207505518763797, 0.02207505518763797, 0.02207505518763797, 0.02207505518763797, 0.019867549668874173, 0.019867549668874173, 0.5055187637969095, 0.5077262693156733, 0.5121412803532008, 0.7130242825607064, 0.9205298013245033, 0.9470198675496688, 0.8300220750551877, 0.543046357615894, 0.5077262693156733, 0.5077262693156733, 0.5033112582781457, 0.017660044150110375, 0.052980132450331126, 0.046357615894039736, 0.017660044150110375, 0.017660044150110375, 0.017660044150110375, 0.017660044150110375, 0.01545253863134658, 0.01545253863134658, 0.01545253863134658, 0.017660044150110375, 0.017660044150110375, 0.017660044150110375, 0.017660044150110375, 0.017660044150110375, 0.017660044150110375, 0.013245033112582781, 0.013245033112582781, 0.013245033112582781, 0.013245033112582781, 0.013245033112582781, 0.013245033112582781, 0.013245033112582781, 0.013245033112582781, 0.013245033112582781, 0.006622516556291391, 0.006622516556291391, 0.5011037527593819, 0.5011037527593819, 0.5011037527593819, 0.49448123620309054, 0.4922737306843267, 0.002207505518763797, 0.002207505518763797, 0.002207505518763797, 0.002207505518763797, 0.002207505518763797, 0.002207505518763797, 0.004415011037527594, 0.006622516556291391, 0.011037527593818985, 0.34216335540838855, 0.3090507726269316, 0.2980132450331126, 0.6225165562913907, 0.5739514348785872, 0.5033112582781457, 0.019867549668874173, 0.017660044150110375, 0.017660044150110375, 0.017660044150110375, 0.017660044150110375, 0.019867549668874173, 0.019867549668874173, 0.019867549668874173, 0.017660044150110375, 0.019867549668874173, 0.019867549668874173, 0.02207505518763797, 0.02207505518763797, 0.02207505518763797, 0.02207505518763797, 0.02207505518763797, 0.02207505518763797, 0.026490066225165563, 0.026490066225165563, 0.026490066225165563, 0.026490066225165563, 0.03090507726269316, 0.5629139072847682, 0.5607064017660044, 0.04856512141280353, 0.039735099337748346, 0.03090507726269316, 0.03532008830022075, 0.03532008830022075, 0.039735099337748346, 0.04194260485651214, 0.04194260485651214, 0.04194260485651214, 0.04194260485651214, 0.04194260485651214, 0.04194260485651214, 0.04415011037527594, 0.046357615894039736, 0.046357615894039736, 0.046357615894039736, 0.046357615894039736, 0.04856512141280353, 0.04856512141280353, 0.05518763796909492, 0.05518763796909492, 0.05739514348785872, 0.06622516556291391, 0.0728476821192053, 0.152317880794702], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/MGS.gap.json b/pfam_gap_rates/MGS.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..795b49e8cd8ef56cd81a700c3cb7da9858191948
--- /dev/null
+++ b/pfam_gap_rates/MGS.gap.json
@@ -0,0 +1 @@
+{"family": "MGS", "n_seqs": 4706, "length": 122, "gap_rates": [0.612409689757756, 0.20951976200594985, 0.13153421164470888, 0.09859753506162346, 0.07139821504462389, 0.06204844878878028, 0.056523586910327245, 0.052486187845303865, 0.04844878878028049, 0.047386315342116445, 0.04504887377815554, 0.035061623459413514, 0.021886952826179345, 0.8839779005524862, 0.8746281342966425, 0.012537186570335741, 0.008287292817679558, 0.00786230344241394, 0.007224819379515512, 0.007224819379515512, 0.007224819379515512, 0.007224819379515512, 0.007224819379515512, 0.007224819379515512, 0.007224819379515512, 0.007224819379515512, 0.0070123246918827025, 0.006799830004249894, 0.006799830004249894, 0.8878028049298767, 0.008924776880577986, 0.008499787505312367, 0.007437314067148321, 0.007224819379515512, 0.007437314067148321, 0.4626009349766256, 0.16298342541436464, 0.1549086272843179, 0.1506587335316617, 0.011262218444538886, 0.010837229069273268, 0.008499787505312367, 0.009349766255843604, 0.008074798130046749, 0.008074798130046749, 0.008924776880577986, 0.504462388440289, 0.046323841903952404, 0.019337016574585635, 0.01806204844878878, 0.3718657033574161, 0.3584785380365491, 0.34509137271568213, 0.5699107522311943, 0.5796855078623034, 0.589035274118147, 0.5956226094347641, 0.5983850403739907, 0.6005099872503188, 0.6028474288142797, 0.6053973650658734, 0.7008074798130047, 0.6495962600934977, 0.6032724181895452, 0.6019974500637484, 0.6000849978750531, 0.5971100722481938, 0.5934976625584361, 0.5864853378665533, 0.5747981300467488, 0.5656608584785381, 0.33191670208244795, 0.008287292817679558, 0.006799830004249894, 0.005737356566085848, 0.004887377815554611, 0.004887377815554611, 0.0053123671908202295, 0.0053123671908202295, 0.006162345941351466, 0.0055248618784530384, 0.005099872503187421, 0.005099872503187421, 0.6245218869528262, 0.6255843603909902, 0.6240968975775606, 0.005099872503187421, 0.005099872503187421, 0.0055248618784530384, 0.005737356566085848, 0.005737356566085848, 0.005737356566085848, 0.005949851253718657, 0.006162345941351466, 0.006374840628984276, 0.006374840628984276, 0.0070123246918827025, 0.00764980875478113, 0.011899702507437314, 0.1944326391840204, 0.9432639184020399, 0.9498512537186571, 0.7868678283042924, 0.5159371015724606, 0.01296217594560136, 0.012324691882702932, 0.011899702507437314, 0.011687207819804505, 0.011899702507437314, 0.011474713132171696, 0.011474713132171696, 0.011474713132171696, 0.010624734381640459, 0.010837229069273268, 0.011899702507437314, 0.013387165320866978, 0.014874628134296642, 0.019549511262218443, 0.02379940501487463, 0.02804929876753081, 0.0371865703357416, 0.34785380365490864], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/MIF.gap.json b/pfam_gap_rates/MIF.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..6b989e79b37e445ee00e8458f35506ca163a0e79
--- /dev/null
+++ b/pfam_gap_rates/MIF.gap.json
@@ -0,0 +1 @@
+{"family": "MIF", "n_seqs": 532, "length": 117, "gap_rates": [0.34210526315789475, 0.29887218045112784, 0.2706766917293233, 0.25, 0.231203007518797, 0.22180451127819548, 0.22180451127819548, 0.21804511278195488, 0.22180451127819548, 0.943609022556391, 0.22932330827067668, 0.2274436090225564, 0.21052631578947367, 0.21428571428571427, 0.2800751879699248, 0.18233082706766918, 0.9041353383458647, 0.14473684210526316, 0.11842105263157894, 0.09774436090225563, 0.09210526315789473, 0.08834586466165413, 0.08646616541353383, 0.08458646616541353, 0.07894736842105263, 0.07330827067669173, 0.06766917293233082, 0.06390977443609022, 0.06578947368421052, 0.05451127819548872, 0.05451127819548872, 0.05075187969924812, 0.04887218045112782, 0.04887218045112782, 0.04887218045112782, 0.04887218045112782, 0.045112781954887216, 0.039473684210526314, 0.039473684210526314, 0.03759398496240601, 0.03571428571428571, 0.03571428571428571, 0.03383458646616541, 0.03007518796992481, 0.03571428571428571, 0.03007518796992481, 0.03195488721804511, 0.03759398496240601, 0.020676691729323307, 0.018796992481203006, 0.018796992481203006, 0.020676691729323307, 0.020676691729323307, 0.022556390977443608, 0.018796992481203006, 0.018796992481203006, 0.020676691729323307, 0.018796992481203006, 0.020676691729323307, 0.016917293233082706, 0.013157894736842105, 0.013157894736842105, 0.011278195488721804, 0.013157894736842105, 0.016917293233082706, 0.016917293233082706, 0.020676691729323307, 0.03383458646616541, 0.06390977443609022, 0.8740601503759399, 0.02631578947368421, 0.03195488721804511, 0.03007518796992481, 0.02443609022556391, 0.03759398496240601, 0.03383458646616541, 0.022556390977443608, 0.020676691729323307, 0.022556390977443608, 0.022556390977443608, 0.022556390977443608, 0.022556390977443608, 0.02443609022556391, 0.02443609022556391, 0.02631578947368421, 0.02819548872180451, 0.03007518796992481, 0.03383458646616541, 0.03571428571428571, 0.03383458646616541, 0.02819548872180451, 0.02819548872180451, 0.02819548872180451, 0.03007518796992481, 0.03195488721804511, 0.03007518796992481, 0.03759398496240601, 0.05263157894736842, 0.06390977443609022, 0.07142857142857142, 0.08270676691729323, 0.08458646616541353, 0.09210526315789473, 0.10714285714285714, 0.12030075187969924, 0.13721804511278196, 0.15601503759398497, 0.2631578947368421, 0.26879699248120303, 0.19924812030075187, 0.20676691729323307, 0.21428571428571427, 0.22180451127819548, 0.23684210526315788, 0.3026315789473684, 0.34210526315789475, 0.7218045112781954], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/MIG-14_Wnt-bd.gap.json b/pfam_gap_rates/MIG-14_Wnt-bd.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..9270edf6d10b5d12e8c73495419385f33317d1fb
--- /dev/null
+++ b/pfam_gap_rates/MIG-14_Wnt-bd.gap.json
@@ -0,0 +1 @@
+{"family": "MIG-14_Wnt-bd", "n_seqs": 253, "length": 340, "gap_rates": [0.4980237154150198, 0.308300395256917, 0.2845849802371542, 0.2766798418972332, 0.2766798418972332, 0.2766798418972332, 0.2727272727272727, 0.2727272727272727, 0.2727272727272727, 0.26877470355731226, 0.2648221343873518, 0.25691699604743085, 0.2490118577075099, 0.2450592885375494, 0.25296442687747034, 0.24110671936758893, 0.22924901185770752, 0.22924901185770752, 0.22924901185770752, 0.22529644268774704, 0.22134387351778656, 0.22134387351778656, 0.22134387351778656, 0.22134387351778656, 0.2134387351778656, 0.2134387351778656, 0.22924901185770752, 0.5968379446640316, 0.8893280632411067, 0.9090909090909091, 0.9169960474308301, 0.9090909090909091, 0.8972332015810277, 0.8695652173913043, 0.5612648221343873, 0.4901185770750988, 0.466403162055336, 0.33201581027667987, 0.2727272727272727, 0.25296442687747034, 0.233201581027668, 0.2134387351778656, 0.5731225296442688, 0.2015810276679842, 0.20948616600790515, 0.4743083003952569, 0.4624505928853755, 0.2015810276679842, 0.18181818181818182, 0.17391304347826086, 0.17391304347826086, 0.16600790513833993, 0.15810276679841898, 0.15810276679841898, 0.1541501976284585, 0.14624505928853754, 0.14624505928853754, 0.14624505928853754, 0.14624505928853754, 0.14624505928853754, 0.1422924901185771, 0.1422924901185771, 0.14624505928853754, 0.15019762845849802, 0.15019762845849802, 0.14624505928853754, 0.15019762845849802, 0.1541501976284585, 0.1541501976284585, 0.1541501976284585, 0.1541501976284585, 0.1541501976284585, 0.1541501976284585, 0.1541501976284585, 0.1541501976284585, 0.1541501976284585, 0.1541501976284585, 0.1541501976284585, 0.15810276679841898, 0.16600790513833993, 0.5296442687747036, 0.5296442687747036, 0.16996047430830039, 0.16600790513833993, 0.16600790513833993, 0.16205533596837945, 0.6442687747035574, 0.16600790513833993, 0.16600790513833993, 0.18181818181818182, 0.17786561264822134, 0.17786561264822134, 0.18972332015810275, 0.19367588932806323, 0.17786561264822134, 0.17391304347826086, 0.16996047430830039, 0.16996047430830039, 0.16996047430830039, 0.16996047430830039, 0.16996047430830039, 0.16996047430830039, 0.16996047430830039, 0.16996047430830039, 0.17391304347826086, 0.17391304347826086, 0.17391304347826086, 0.17391304347826086, 0.17391304347826086, 0.16996047430830039, 0.16600790513833993, 0.16996047430830039, 0.17391304347826086, 0.17786561264822134, 0.17391304347826086, 0.17786561264822134, 0.17391304347826086, 0.1857707509881423, 0.1857707509881423, 0.16996047430830039, 0.16996047430830039, 0.17391304347826086, 0.17786561264822134, 0.17786561264822134, 0.17786561264822134, 0.16996047430830039, 0.16600790513833993, 0.16600790513833993, 0.16600790513833993, 0.16600790513833993, 0.16600790513833993, 0.16600790513833993, 0.16205533596837945, 0.16205533596837945, 0.16600790513833993, 0.16205533596837945, 0.16205533596837945, 0.16205533596837945, 0.16600790513833993, 0.16205533596837945, 0.16205533596837945, 0.16205533596837945, 0.16600790513833993, 0.16600790513833993, 0.16205533596837945, 0.16205533596837945, 0.16205533596837945, 0.16205533596837945, 0.16205533596837945, 0.16600790513833993, 0.6284584980237155, 0.16996047430830039, 0.16996047430830039, 0.16996047430830039, 0.17391304347826086, 0.2924901185770751, 0.391304347826087, 0.2015810276679842, 0.2885375494071146, 0.20948616600790515, 0.3675889328063241, 0.9288537549407114, 0.1976284584980237, 0.1976284584980237, 0.19367588932806323, 0.19367588932806323, 0.2015810276679842, 0.932806324110672, 0.2015810276679842, 0.19367588932806323, 0.19367588932806323, 0.19367588932806323, 0.19367588932806323, 0.19367588932806323, 0.19367588932806323, 0.1976284584980237, 0.1976284584980237, 0.2015810276679842, 0.1976284584980237, 0.2015810276679842, 0.1976284584980237, 0.1976284584980237, 0.1976284584980237, 0.1976284584980237, 0.2015810276679842, 0.1976284584980237, 0.1976284584980237, 0.2015810276679842, 0.20553359683794467, 0.1976284584980237, 0.1976284584980237, 0.22134387351778656, 0.21739130434782608, 0.20553359683794467, 0.1976284584980237, 0.1976284584980237, 0.1976284584980237, 0.1976284584980237, 0.20553359683794467, 0.1976284584980237, 0.233201581027668, 0.2015810276679842, 0.20553359683794467, 0.2450592885375494, 0.25296442687747034, 0.3715415019762846, 0.6640316205533597, 0.7193675889328063, 0.6996047430830039, 0.4189723320158103, 0.33201581027667987, 0.24110671936758893, 0.24110671936758893, 0.9130434782608695, 0.9169960474308301, 0.8735177865612648, 0.18972332015810275, 0.18972332015810275, 0.18972332015810275, 0.18972332015810275, 0.1857707509881423, 0.1857707509881423, 0.1857707509881423, 0.1857707509881423, 0.1857707509881423, 0.1857707509881423, 0.1857707509881423, 0.1857707509881423, 0.1857707509881423, 0.1857707509881423, 0.1857707509881423, 0.18972332015810275, 0.1857707509881423, 0.1857707509881423, 0.1857707509881423, 0.18181818181818182, 0.18181818181818182, 0.1857707509881423, 0.1976284584980237, 0.19367588932806323, 0.18972332015810275, 0.18972332015810275, 0.18972332015810275, 0.18972332015810275, 0.18972332015810275, 0.18972332015810275, 0.4782608695652174, 0.4782608695652174, 0.22924901185770752, 0.2766798418972332, 0.6679841897233202, 0.6679841897233202, 0.6798418972332015, 0.691699604743083, 0.691699604743083, 0.6996047430830039, 0.9288537549407114, 0.691699604743083, 0.691699604743083, 0.6837944664031621, 0.6758893280632411, 0.6679841897233202, 0.6640316205533597, 0.25691699604743085, 0.3359683794466403, 0.3359683794466403, 0.33201581027667987, 0.6363636363636364, 0.20553359683794467, 0.2015810276679842, 0.2015810276679842, 0.2015810276679842, 0.4505928853754941, 0.43478260869565216, 0.4308300395256917, 0.22134387351778656, 0.2134387351778656, 0.20948616600790515, 0.2134387351778656, 0.21739130434782608, 0.2134387351778656, 0.2134387351778656, 0.2134387351778656, 0.2134387351778656, 0.2134387351778656, 0.2134387351778656, 0.2134387351778656, 0.2134387351778656, 0.2134387351778656, 0.2134387351778656, 0.2134387351778656, 0.2134387351778656, 0.391304347826087, 0.38735177865612647, 0.391304347826087, 0.49407114624505927, 0.4980237154150198, 0.5059288537549407, 0.6245059288537549, 0.6877470355731226, 0.7707509881422925, 0.7430830039525692, 0.6679841897233202, 0.549407114624506, 0.5019762845849802, 0.4980237154150198, 0.48616600790513836, 0.2648221343873518, 0.48616600790513836, 0.3557312252964427, 0.31225296442687744, 0.28063241106719367, 0.2490118577075099, 0.21739130434782608, 0.20553359683794467, 0.20553359683794467, 0.20553359683794467, 0.20553359683794467, 0.20553359683794467, 0.20553359683794467, 0.20553359683794467, 0.20553359683794467, 0.20553359683794467, 0.20948616600790515, 0.2134387351778656, 0.21739130434782608, 0.22529644268774704, 0.22924901185770752, 0.233201581027668, 0.22924901185770752, 0.22924901185770752, 0.22924901185770752, 0.233201581027668, 0.233201581027668, 0.233201581027668, 0.2450592885375494, 0.25296442687747034, 0.2608695652173913, 0.3359683794466403, 0.616600790513834], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/MIR.gap.json b/pfam_gap_rates/MIR.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..2ad30a44c2a87666c991ba88cea9c6e7e0d8d60f
--- /dev/null
+++ b/pfam_gap_rates/MIR.gap.json
@@ -0,0 +1 @@
+{"family": "MIR", "n_seqs": 1092, "length": 222, "gap_rates": [0.9056776556776557, 0.6181318681318682, 0.5732600732600732, 0.7307692307692307, 0.7243589743589743, 0.7023809523809523, 0.6868131868131868, 0.6831501831501832, 0.6593406593406593, 0.6456043956043956, 0.45604395604395603, 0.423992673992674, 0.1401098901098901, 0.1391941391941392, 0.1391941391941392, 0.17857142857142858, 0.1401098901098901, 0.13644688644688643, 0.1346153846153846, 0.1346153846153846, 0.13553113553113552, 0.14377289377289376, 0.14194139194139194, 0.14102564102564102, 0.1401098901098901, 0.1401098901098901, 0.14377289377289376, 0.6236263736263736, 0.6043956043956044, 0.5934065934065934, 0.9386446886446886, 0.9340659340659341, 0.5934065934065934, 0.5897435897435898, 0.575091575091575, 0.49725274725274726, 0.08699633699633699, 0.08424908424908426, 0.08241758241758242, 0.08058608058608059, 0.07692307692307693, 0.07326007326007326, 0.07142857142857142, 0.0695970695970696, 0.06684981684981685, 0.06593406593406594, 0.06868131868131869, 0.07417582417582418, 0.7481684981684982, 0.7243589743589743, 0.7124542124542125, 0.5695970695970696, 0.04120879120879121, 0.040293040293040296, 0.039377289377289376, 0.039377289377289376, 0.04120879120879121, 0.04120879120879121, 0.04120879120879121, 0.04120879120879121, 0.2032967032967033, 0.5659340659340659, 0.673992673992674, 0.8141025641025641, 0.8708791208791209, 0.9001831501831502, 0.9139194139194139, 0.9468864468864469, 0.9084249084249084, 0.8873626373626373, 0.8562271062271062, 0.7289377289377289, 0.6245421245421245, 0.4899267399267399, 0.08608058608058608, 0.03663003663003663, 0.9404761904761905, 0.9496336996336996, 0.8205128205128205, 0.031135531135531136, 0.03205128205128205, 0.031135531135531136, 0.029304029304029304, 0.027472527472527472, 0.027472527472527472, 0.028388278388278388, 0.027472527472527472, 0.027472527472527472, 0.02564102564102564, 0.02564102564102564, 0.02564102564102564, 0.026556776556776556, 0.02564102564102564, 0.02564102564102564, 0.026556776556776556, 0.023809523809523808, 0.023809523809523808, 0.023809523809523808, 0.023809523809523808, 0.022893772893772892, 0.024725274725274724, 0.02564102564102564, 0.02564102564102564, 0.024725274725274724, 0.027472527472527472, 0.031135531135531136, 0.7417582417582418, 0.8772893772893773, 0.8983516483516484, 0.902014652014652, 0.9139194139194139, 0.924908424908425, 0.9340659340659341, 0.9404761904761905, 0.9395604395604396, 0.9285714285714286, 0.9212454212454212, 0.9047619047619048, 0.8992673992673993, 0.8791208791208791, 0.8717948717948718, 0.0641025641025641, 0.06684981684981685, 0.05860805860805861, 0.0521978021978022, 0.045787545787545784, 0.3608058608058608, 0.38003663003663, 0.6391941391941391, 0.30128205128205127, 0.16025641025641027, 0.06868131868131869, 0.04945054945054945, 0.048534798534798536, 0.047619047619047616, 0.046703296703296704, 0.046703296703296704, 0.048534798534798536, 0.05402930402930403, 0.05860805860805861, 0.10347985347985347, 0.10347985347985347, 0.10256410256410256, 0.2664835164835165, 0.28296703296703296, 0.27014652014652013, 0.9496336996336996, 0.8104395604395604, 0.21886446886446886, 0.21703296703296704, 0.21153846153846154, 0.7042124542124543, 0.9432234432234432, 0.6492673992673993, 0.16666666666666666, 0.16758241758241757, 0.16483516483516483, 0.15934065934065933, 0.2316849816849817, 0.28296703296703296, 0.2454212454212454, 0.2216117216117216, 0.2042124542124542, 0.18864468864468864, 0.18315018315018314, 0.1684981684981685, 0.15934065934065933, 0.1510989010989011, 0.1510989010989011, 0.14743589743589744, 0.14743589743589744, 0.14926739926739926, 0.1446886446886447, 0.1446886446886447, 0.14743589743589744, 0.1510989010989011, 0.14652014652014653, 0.14743589743589744, 0.14652014652014653, 0.14926739926739926, 0.15018315018315018, 0.1510989010989011, 0.15018315018315018, 0.15567765567765568, 0.152014652014652, 0.15293040293040294, 0.15293040293040294, 0.15384615384615385, 0.15476190476190477, 0.1565934065934066, 0.1684981684981685, 0.17307692307692307, 0.17673992673992675, 0.18315018315018314, 0.18956043956043955, 0.19963369963369965, 0.2042124542124542, 0.2097069597069597, 0.21153846153846154, 0.21886446886446886, 0.22435897435897437, 0.23076923076923078, 0.7912087912087912, 0.7838827838827839, 0.24175824175824176, 0.23992673992673993, 0.23809523809523808, 0.24267399267399267, 0.27106227106227104, 0.28296703296703296, 0.2902930402930403, 0.3076923076923077, 0.336996336996337, 0.36538461538461536, 0.3791208791208791, 0.3983516483516483, 0.4175824175824176, 0.45695970695970695, 0.49725274725274726, 0.5393772893772893, 0.5686813186813187, 0.782967032967033], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/MORN.gap.json b/pfam_gap_rates/MORN.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ea87920796a4a8b7569ae31893317701964b7c28
--- /dev/null
+++ b/pfam_gap_rates/MORN.gap.json
@@ -0,0 +1 @@
+{"family": "MORN", "n_seqs": 5000, "length": 23, "gap_rates": [0.0788, 0.0536, 0.0384, 0.0328, 0.0294, 0.0254, 0.0204, 0.017, 0.01, 0.0164, 0.01, 0.0128, 0.0154, 0.0194, 0.0298, 0.0528, 0.102, 0.1432, 0.1872, 0.2248, 0.2772, 0.4548, 0.787], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/MOZART1.gap.json b/pfam_gap_rates/MOZART1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..387f0adc61e24ddbe89d5ab369b7716b98711029
--- /dev/null
+++ b/pfam_gap_rates/MOZART1.gap.json
@@ -0,0 +1 @@
+{"family": "MOZART1", "n_seqs": 228, "length": 47, "gap_rates": [0.3508771929824561, 0.18421052631578946, 0.11842105263157894, 0.08333333333333333, 0.039473684210526314, 0.039473684210526314, 0.02631578947368421, 0.02631578947368421, 0.02631578947368421, 0.013157894736842105, 0.0043859649122807015, 0.0043859649122807015, 0.0043859649122807015, 0.0043859649122807015, 0.0043859649122807015, 0.0043859649122807015, 0.0043859649122807015, 0.0043859649122807015, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0043859649122807015, 0.0043859649122807015, 0.0043859649122807015, 0.0043859649122807015, 0.008771929824561403, 0.017543859649122806, 0.017543859649122806, 0.017543859649122806, 0.017543859649122806, 0.021929824561403508, 0.03070175438596491, 0.03070175438596491, 0.043859649122807015, 0.05701754385964912, 0.06140350877192982, 0.08771929824561403, 0.10526315789473684, 0.10964912280701754, 0.2850877192982456], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/MRP-L27.gap.json b/pfam_gap_rates/MRP-L27.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..862c739308ac50ad065a480ee32effb9c16ff67d
--- /dev/null
+++ b/pfam_gap_rates/MRP-L27.gap.json
@@ -0,0 +1 @@
+{"family": "MRP-L27", "n_seqs": 268, "length": 130, "gap_rates": [0.7761194029850746, 0.7201492537313433, 0.664179104477612, 0.6305970149253731, 0.5, 0.3582089552238806, 0.35074626865671643, 0.27611940298507465, 0.16417910447761194, 0.14925373134328357, 0.1417910447761194, 0.12686567164179105, 0.11940298507462686, 0.11567164179104478, 0.11940298507462686, 0.1417910447761194, 0.1044776119402985, 0.10074626865671642, 0.09328358208955224, 0.09701492537313433, 0.08208955223880597, 0.7985074626865671, 0.8097014925373134, 0.8097014925373134, 0.8134328358208955, 0.8283582089552238, 0.917910447761194, 0.9328358208955224, 0.8395522388059702, 0.8208955223880597, 0.8134328358208955, 0.8097014925373134, 0.7985074626865671, 0.7985074626865671, 0.05223880597014925, 0.048507462686567165, 0.048507462686567165, 0.048507462686567165, 0.048507462686567165, 0.048507462686567165, 0.041044776119402986, 0.041044776119402986, 0.1044776119402985, 0.09328358208955224, 0.9402985074626866, 0.041044776119402986, 0.026119402985074626, 0.022388059701492536, 0.018656716417910446, 0.018656716417910446, 0.011194029850746268, 0.007462686567164179, 0.007462686567164179, 0.007462686567164179, 0.007462686567164179, 0.007462686567164179, 0.007462686567164179, 0.007462686567164179, 0.0, 0.0, 0.0, 0.007462686567164179, 0.007462686567164179, 0.014925373134328358, 0.914179104477612, 0.9291044776119403, 0.7014925373134329, 0.011194029850746268, 0.014925373134328358, 0.014925373134328358, 0.018656716417910446, 0.026119402985074626, 0.048507462686567165, 0.05223880597014925, 0.05970149253731343, 0.05970149253731343, 0.06343283582089553, 0.06343283582089553, 0.06716417910447761, 0.08955223880597014, 0.1044776119402985, 0.16791044776119404, 0.2126865671641791, 0.2873134328358209, 0.33955223880597013, 0.3694029850746269, 0.40671641791044777, 0.6940298507462687, 0.6977611940298507, 0.7126865671641791, 0.7201492537313433, 0.7313432835820896, 0.7425373134328358, 0.753731343283582, 0.7649253731343284, 0.7686567164179104, 0.7835820895522388, 0.7798507462686567, 0.7873134328358209, 0.7910447761194029, 0.7910447761194029, 0.7910447761194029, 0.8097014925373134, 0.7388059701492538, 0.7425373134328358, 0.7425373134328358, 0.7425373134328358, 0.7611940298507462, 0.746268656716418, 0.746268656716418, 0.75, 0.75, 0.7574626865671642, 0.7611940298507462, 0.7649253731343284, 0.7686567164179104, 0.7686567164179104, 0.8395522388059702, 0.8283582089552238, 0.832089552238806, 0.7910447761194029, 0.7985074626865671, 0.7985074626865671, 0.7947761194029851, 0.8171641791044776, 0.8171641791044776, 0.8171641791044776, 0.8246268656716418, 0.8470149253731343, 0.917910447761194], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/MTHFR.gap.json b/pfam_gap_rates/MTHFR.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d4b059f0eeb43bfe818654f614ab9eb33b692b75
--- /dev/null
+++ b/pfam_gap_rates/MTHFR.gap.json
@@ -0,0 +1 @@
+{"family": "MTHFR", "n_seqs": 2324, "length": 336, "gap_rates": [0.8993115318416524, 0.7633390705679862, 0.7117039586919105, 0.6635111876075731, 0.6092943201376936, 0.564974182444062, 0.4974182444061962, 0.3683304647160069, 0.2921686746987952, 0.2327882960413081, 0.18674698795180722, 0.15060240963855423, 0.1303786574870912, 0.12994836488812392, 0.12779690189328743, 0.12779690189328743, 0.12693631669535285, 0.12822719449225473, 0.12779690189328743, 0.12521514629948366, 0.12693631669535285, 0.12650602409638553, 0.13253012048192772, 0.13123924268502582, 0.14974182444061962, 0.14457831325301204, 0.14759036144578314, 0.1553356282271945, 0.12822719449225473, 0.1333907056798623, 0.12306368330464716, 0.12349397590361445, 0.12091222030981068, 0.11746987951807229, 0.11833046471600689, 0.10972461273666093, 0.10929432013769363, 0.1338209982788296, 0.11402753872633391, 0.1153184165232358, 0.9414802065404475, 0.18717728055077454, 0.14113597246127366, 0.09896729776247848, 0.09552495697074011, 0.0972461273666093, 0.09337349397590361, 0.09294320137693632, 0.09251290877796901, 0.09165232358003442, 0.09165232358003442, 0.09251290877796901, 0.09165232358003442, 0.9122203098106713, 0.9182444061962134, 0.9388984509466437, 0.9401893287435457, 0.9401893287435457, 0.9406196213425129, 0.9414802065404475, 0.9487951807228916, 0.9414802065404475, 0.9410499139414802, 0.9406196213425129, 0.9401893287435457, 0.9401893287435457, 0.9311531841652324, 0.9160929432013769, 0.8941480206540448, 0.22461273666092943, 0.09552495697074011, 0.08734939759036145, 0.08519793459552495, 0.08476764199655766, 0.08605851979345955, 0.08132530120481928, 0.07960413080895008, 0.07917383820998279, 0.07530120481927711, 0.07487091222030981, 0.07444061962134252, 0.07228915662650602, 0.0774526678141136, 0.096815834767642, 0.09552495697074011, 0.09853700516351119, 0.06411359724612736, 0.06239242685025818, 0.06196213425129088, 0.060671256454388985, 0.05636833046471601, 0.055507745266781414, 0.05464716006884682, 0.05378657487091222, 0.05335628227194492, 0.05421686746987952, 0.05378657487091222, 0.0572289156626506, 0.052925989672977625, 0.050774526678141134, 0.050344234079173836, 0.050344234079173836, 0.04991394148020654, 0.04905335628227195, 0.04948364888123924, 0.04862306368330465, 0.04948364888123924, 0.04948364888123924, 0.050774526678141134, 0.05120481927710843, 0.04905335628227195, 0.04862306368330465, 0.04647160068846816, 0.04604130808950086, 0.04561101549053356, 0.045180722891566265, 0.045180722891566265, 0.045180722891566265, 0.045180722891566265, 0.045180722891566265, 0.04561101549053356, 0.045180722891566265, 0.045180722891566265, 0.045180722891566265, 0.045180722891566265, 0.05378657487091222, 0.058519793459552494, 0.058089500860585196, 0.05981067125645439, 0.12435456110154905, 0.21514629948364888, 0.35111876075731496, 0.6854561101549054, 0.2749569707401033, 0.21729776247848537, 0.10413080895008606, 0.07314974182444062, 0.07142857142857142, 0.11790017211703958, 0.0972461273666093, 0.8743545611015491, 0.8679001721170396, 0.08864027538726334, 0.06927710843373494, 0.16910499139414803, 0.05679862306368331, 0.04948364888123924, 0.04561101549053356, 0.045180722891566265, 0.04561101549053356, 0.04388984509466437, 0.04475043029259897, 0.043029259896729774, 0.04345955249569707, 0.28657487091222034, 0.7336488812392427, 0.7865748709122203, 0.8158347676419966, 0.8407917383820999, 0.8562822719449226, 0.8924268502581756, 0.9225473321858864, 0.8855421686746988, 0.8476764199655766, 0.8274526678141136, 0.8093803786574871, 0.7697934595524957, 0.7190189328743546, 0.06196213425129088, 0.06325301204819277, 0.06411359724612736, 0.06454388984509467, 0.3644578313253012, 0.07099827882960413, 0.06110154905335628, 0.05421686746987952, 0.04905335628227195, 0.04604130808950086, 0.050774526678141134, 0.05679862306368331, 0.08562822719449226, 0.08519793459552495, 0.923407917383821, 0.8980206540447504, 0.0761617900172117, 0.07530120481927711, 0.06368330464716007, 0.055507745266781414, 0.8592943201376936, 0.8730636833046471, 0.9122203098106713, 0.9432013769363167, 0.9388984509466437, 0.8756454388984509, 0.8653184165232358, 0.8450946643717728, 0.05938037865748709, 0.06325301204819277, 0.06325301204819277, 0.05981067125645439, 0.05120481927710843, 0.05206540447504303, 0.04862306368330465, 0.04130808950086059, 0.037435456110154905, 0.03356282271944923, 0.030120481927710843, 0.028399311531841654, 0.02882960413080895, 0.027538726333907058, 0.02882960413080895, 0.029690189328743545, 0.032271944922547334, 0.03356282271944923, 0.03313253012048193, 0.02667814113597246, 0.025387263339070567, 0.02495697074010327, 0.025387263339070567, 0.02495697074010327, 0.02495697074010327, 0.02495697074010327, 0.02495697074010327, 0.025387263339070567, 0.026247848537005163, 0.026247848537005163, 0.02882960413080895, 0.03055077452667814, 0.03055077452667814, 0.031841652323580036, 0.03141135972461274, 0.03055077452667814, 0.03098106712564544, 0.03098106712564544, 0.03356282271944923, 0.035283993115318414, 0.03657487091222031, 0.039586919104991396, 0.04388984509466437, 0.055507745266781414, 0.06239242685025818, 0.06755593803786575, 0.8730636833046471, 0.9457831325301205, 0.8588640275387264, 0.12908777969018934, 0.0942340791738382, 0.032271944922547334, 0.032271944922547334, 0.03356282271944923, 0.03442340791738382, 0.034853700516351116, 0.03571428571428571, 0.040017211703958694, 0.04216867469879518, 0.04173838209982788, 0.04216867469879518, 0.04345955249569707, 0.04475043029259897, 0.04432013769363167, 0.04690189328743546, 0.047332185886402756, 0.04862306368330465, 0.04991394148020654, 0.050774526678141134, 0.05981067125645439, 0.05421686746987952, 0.05335628227194492, 0.055077452667814115, 0.7977624784853701, 0.055077452667814115, 0.055077452667814115, 0.060240963855421686, 0.06282271944922548, 0.06282271944922548, 0.06325301204819277, 0.06454388984509467, 0.06583476764199656, 0.06712564543889846, 0.06798623063683305, 0.06970740103270223, 0.07056798623063683, 0.0757314974182444, 0.20654044750430292, 0.1906196213425129, 0.12521514629948366, 0.11919104991394149, 0.11316695352839931, 0.12736660929432014, 0.12177280550774526, 0.12521514629948366, 0.12822719449225473, 0.11617900172117039, 0.11790017211703958, 0.11359724612736662, 0.0959552495697074, 0.09552495697074011, 0.0981067125645439, 0.10068846815834767, 0.10197934595524957, 0.10370051635111877, 0.10499139414802065, 0.10843373493975904, 0.10671256454388985, 0.11144578313253012, 0.1157487091222031, 0.12822719449225473, 0.14328743545611017, 0.1518932874354561, 0.15060240963855423, 0.15748709122203097, 0.9367469879518072, 0.8506884681583476, 0.2345094664371773, 0.18330464716006883, 0.18416523235800344, 0.15705679862306368, 0.1579173838209983, 0.15920826161790017, 0.16566265060240964, 0.1716867469879518, 0.18416523235800344, 0.18760757314974183, 0.1923407917383821, 0.1962134251290878, 0.19793459552495696, 0.20094664371772805, 0.20611015490533563, 0.20783132530120482, 0.2121342512908778, 0.21729776247848537, 0.22633390705679862, 0.24612736660929432, 0.3093803786574871, 0.42641996557659206, 0.6785714285714286], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Macro.gap.json b/pfam_gap_rates/Macro.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b80a4439f24e9457f9da906abff103a43e906aab
--- /dev/null
+++ b/pfam_gap_rates/Macro.gap.json
@@ -0,0 +1 @@
+{"family": "Macro", "n_seqs": 2310, "length": 129, "gap_rates": [0.20476190476190476, 0.16796536796536796, 0.15281385281385282, 0.14155844155844155, 0.12857142857142856, 0.12380952380952381, 0.12121212121212122, 0.11731601731601732, 0.11471861471861472, 0.10822510822510822, 0.9272727272727272, 0.9303030303030303, 0.9303030303030303, 0.9298701298701298, 0.8900432900432901, 0.09307359307359307, 0.08484848484848485, 0.07835497835497836, 0.09047619047619047, 0.07056277056277056, 0.06623376623376623, 0.06493506493506493, 0.06277056277056277, 0.06233766233766234, 0.06190476190476191, 0.06147186147186147, 0.06017316017316017, 0.06017316017316017, 0.05930735930735931, 0.0632034632034632, 0.0645021645021645, 0.06406926406926407, 0.06190476190476191, 0.06060606060606061, 0.05714285714285714, 0.05497835497835498, 0.05541125541125541, 0.05454545454545454, 0.5233766233766234, 0.5277056277056277, 0.5658008658008657, 0.5285714285714286, 0.09004329004329005, 0.07705627705627706, 0.8722943722943723, 0.8112554112554112, 0.05800865800865801, 0.05108225108225108, 0.047186147186147186, 0.03982683982683983, 0.03852813852813853, 0.03766233766233766, 0.0354978354978355, 0.0316017316017316, 0.03116883116883117, 0.032467532467532464, 0.03116883116883117, 0.02857142857142857, 0.02857142857142857, 0.04458874458874459, 0.04329004329004329, 0.932034632034632, 0.8696969696969697, 0.07575757575757576, 0.05108225108225108, 0.030735930735930735, 0.025108225108225107, 0.022943722943722943, 0.022510822510822513, 0.022943722943722943, 0.1722943722943723, 0.1683982683982684, 0.051515151515151514, 0.04935064935064935, 0.05800865800865801, 0.1329004329004329, 0.5662337662337662, 0.29783549783549784, 0.9251082251082251, 0.8813852813852814, 0.12467532467532468, 0.10173160173160173, 0.08138528138528138, 0.05627705627705628, 0.03506493506493506, 0.03116883116883117, 0.029004329004329005, 0.02813852813852814, 0.02857142857142857, 0.02813852813852814, 0.027705627705627706, 0.027705627705627706, 0.02813852813852814, 0.027705627705627706, 0.02813852813852814, 0.02987012987012987, 0.03766233766233766, 0.0380952380952381, 0.03852813852813853, 0.0367965367965368, 0.04242424242424243, 0.04329004329004329, 0.04112554112554113, 0.03982683982683983, 0.050216450216450215, 0.03896103896103896, 0.03506493506493506, 0.03593073593073593, 0.03636363636363636, 0.03722943722943723, 0.03852813852813853, 0.03982683982683983, 0.04199134199134199, 0.04588744588744589, 0.047619047619047616, 0.05108225108225108, 0.05367965367965368, 0.05670995670995671, 0.06147186147186147, 0.0670995670995671, 0.07272727272727272, 0.07575757575757576, 0.08181818181818182, 0.08961038961038961, 0.09437229437229437, 0.11298701298701298, 0.1683982683982684, 0.2584415584415584, 0.49956709956709955], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Mak16.gap.json b/pfam_gap_rates/Mak16.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..96c0ad2c3796217df2f532fc65a314208ceedc0f
--- /dev/null
+++ b/pfam_gap_rates/Mak16.gap.json
@@ -0,0 +1 @@
+{"family": "Mak16", "n_seqs": 343, "length": 133, "gap_rates": [0.5306122448979592, 0.07580174927113703, 0.043731778425655975, 0.029154518950437316, 0.023323615160349854, 0.02040816326530612, 0.02040816326530612, 0.02040816326530612, 0.02040816326530612, 0.014577259475218658, 0.014577259475218658, 0.011661807580174927, 0.011661807580174927, 0.011661807580174927, 0.008746355685131196, 0.008746355685131196, 0.008746355685131196, 0.008746355685131196, 0.008746355685131196, 0.008746355685131196, 0.008746355685131196, 0.008746355685131196, 0.0058309037900874635, 0.0058309037900874635, 0.0058309037900874635, 0.0058309037900874635, 0.0058309037900874635, 0.0058309037900874635, 0.0058309037900874635, 0.0029154518950437317, 0.0029154518950437317, 0.0029154518950437317, 0.0029154518950437317, 0.0029154518950437317, 0.0029154518950437317, 0.0029154518950437317, 0.0058309037900874635, 0.008746355685131196, 0.008746355685131196, 0.0058309037900874635, 0.565597667638484, 0.0058309037900874635, 0.0058309037900874635, 0.0058309037900874635, 0.008746355685131196, 0.03206997084548105, 0.03206997084548105, 0.01749271137026239, 0.02040816326530612, 0.026239067055393587, 0.03206997084548105, 0.029154518950437316, 0.023323615160349854, 0.026239067055393587, 0.03206997084548105, 0.052478134110787174, 0.05539358600583091, 0.0641399416909621, 0.5714285714285714, 0.6355685131195336, 0.6997084548104956, 0.7638483965014577, 0.8017492711370262, 0.8892128279883382, 0.9212827988338192, 0.9475218658892128, 0.9475218658892128, 0.9300291545189504, 0.9067055393586005, 0.8163265306122449, 0.7871720116618076, 0.717201166180758, 0.641399416909621, 0.597667638483965, 0.5364431486880467, 0.20699708454810495, 0.40524781341107874, 0.3323615160349854, 0.3032069970845481, 0.17784256559766765, 0.12536443148688048, 0.10495626822157435, 0.08746355685131195, 0.09037900874635568, 0.08163265306122448, 0.08454810495626822, 0.11370262390670553, 0.14285714285714285, 0.37900874635568516, 0.33819241982507287, 0.2886297376093295, 0.26822157434402333, 0.9067055393586005, 0.924198250728863, 0.9475218658892128, 0.9387755102040817, 0.9125364431486881, 0.8979591836734694, 0.25072886297376096, 0.2594752186588921, 0.2536443148688047, 0.2478134110787172, 0.14285714285714285, 0.7317784256559767, 0.9125364431486881, 0.9475218658892128, 0.8454810495626822, 0.6297376093294461, 0.09912536443148688, 0.09620991253644315, 0.09037900874635568, 0.09620991253644315, 0.10495626822157435, 0.11078717201166181, 0.11078717201166181, 0.8104956268221575, 0.13702623906705538, 0.21865889212827988, 0.8250728862973761, 0.16326530612244897, 0.8250728862973761, 0.924198250728863, 0.6530612244897959, 0.1282798833819242, 0.12536443148688048, 0.13119533527696792, 0.13119533527696792, 0.14868804664723032, 0.16326530612244897, 0.1836734693877551, 0.27696793002915454, 0.33819241982507287, 0.4314868804664723], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Malectin.gap.json b/pfam_gap_rates/Malectin.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..6245fd9239d71b3779fe75b520a877898aaee462
--- /dev/null
+++ b/pfam_gap_rates/Malectin.gap.json
@@ -0,0 +1 @@
+{"family": "Malectin", "n_seqs": 885, "length": 206, "gap_rates": [0.9491525423728814, 0.39096045197740115, 0.2135593220338983, 0.17853107344632768, 0.1638418079096045, 0.15480225988700566, 0.15254237288135594, 0.1480225988700565, 0.14576271186440679, 0.14124293785310735, 0.13898305084745763, 0.13220338983050847, 0.911864406779661, 0.6949152542372882, 0.4, 0.15480225988700566, 0.15028248587570622, 0.15028248587570622, 0.14124293785310735, 0.11412429378531073, 0.11299435028248588, 0.10734463276836158, 0.10734463276836158, 0.10621468926553672, 0.10621468926553672, 0.10621468926553672, 0.10621468926553672, 0.10847457627118644, 0.15706214689265538, 0.1096045197740113, 0.11186440677966102, 0.1152542372881356, 0.11864406779661017, 0.8723163841807909, 0.7785310734463277, 0.5446327683615819, 0.31751412429378534, 0.2824858757062147, 0.2734463276836158, 0.27796610169491526, 0.8531073446327684, 0.911864406779661, 0.7988700564971751, 0.3706214689265537, 0.4553672316384181, 0.4689265536723164, 0.48926553672316386, 0.5028248587570622, 0.5129943502824859, 0.536723163841808, 0.5536723163841808, 0.576271186440678, 0.6485875706214689, 0.8395480225988701, 0.9333333333333333, 0.7288135593220338, 0.5988700564971752, 0.5672316384180791, 0.5446327683615819, 0.5231638418079096, 0.5084745762711864, 0.496045197740113, 0.47909604519774013, 0.4598870056497175, 0.44745762711864406, 0.2903954802259887, 0.2384180790960452, 0.17853107344632768, 0.09491525423728814, 0.08587570621468926, 0.08361581920903954, 0.07796610169491526, 0.0711864406779661, 0.0711864406779661, 0.06779661016949153, 0.06892655367231638, 0.06666666666666667, 0.06892655367231638, 0.0576271186440678, 0.9242937853107345, 0.05649717514124294, 0.05536723163841808, 0.05423728813559322, 0.05310734463276836, 0.05310734463276836, 0.05084745762711865, 0.04632768361581921, 0.04632768361581921, 0.9491525423728814, 0.04745762711864407, 0.18418079096045198, 0.1638418079096045, 0.10734463276836158, 0.059887005649717516, 0.04180790960451977, 0.04180790960451977, 0.04180790960451977, 0.04180790960451977, 0.03954802259887006, 0.23615819209039549, 0.07005649717514124, 0.05875706214689266, 0.02824858757062147, 0.02824858757062147, 0.02711864406779661, 0.024858757062146894, 0.023728813559322035, 0.023728813559322035, 0.023728813559322035, 0.024858757062146894, 0.02824858757062147, 0.02824858757062147, 0.02824858757062147, 0.02824858757062147, 0.02937853107344633, 0.02824858757062147, 0.02824858757062147, 0.030508474576271188, 0.0327683615819209, 0.45310734463276836, 0.4847457627118644, 0.9367231638418079, 0.9073446327683616, 0.4542372881355932, 0.44745762711864406, 0.3423728813559322, 0.3220338983050847, 0.05310734463276836, 0.04067796610169491, 0.031638418079096044, 0.030508474576271188, 0.02937853107344633, 0.02937853107344633, 0.02824858757062147, 0.02937853107344633, 0.031638418079096044, 0.030508474576271188, 0.02824858757062147, 0.030508474576271188, 0.9446327683615819, 0.03954802259887006, 0.0327683615819209, 0.031638418079096044, 0.030508474576271188, 0.03502824858757062, 0.03389830508474576, 0.03389830508474576, 0.03502824858757062, 0.03728813559322034, 0.03615819209039548, 0.03502824858757062, 0.03615819209039548, 0.03954802259887006, 0.04858757062146893, 0.0384180790960452, 0.09152542372881356, 0.07344632768361582, 0.8949152542372881, 0.4327683615819209, 0.16610169491525423, 0.059887005649717516, 0.05875706214689266, 0.0576271186440678, 0.0576271186440678, 0.0576271186440678, 0.4655367231638418, 0.0711864406779661, 0.06440677966101695, 0.062146892655367235, 0.06327683615819209, 0.07457627118644068, 0.0655367231638418, 0.0655367231638418, 0.06779661016949153, 0.0711864406779661, 0.07344632768361582, 0.9333333333333333, 0.888135593220339, 0.0768361581920904, 0.08248587570621468, 0.08587570621468926, 0.08926553672316384, 0.31751412429378534, 0.34576271186440677, 0.33785310734463275, 0.34576271186440677, 0.3525423728813559, 0.3615819209039548, 0.36836158192090396, 0.3694915254237288, 0.37740112994350283, 0.37966101694915255, 0.384180790960452, 0.37740112994350283, 0.8870056497175142, 0.20112994350282487, 0.19096045197740114, 0.18531073446327684, 0.1864406779661017, 0.6576271186440678, 0.19548022598870057, 0.19661016949152543, 0.2, 0.207909604519774, 0.2135593220338983, 0.2497175141242938], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Malectin_like.gap.json b/pfam_gap_rates/Malectin_like.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..21504a77f8729514f70adae85ad4d1e86936a19c
--- /dev/null
+++ b/pfam_gap_rates/Malectin_like.gap.json
@@ -0,0 +1 @@
+{"family": "Malectin_like", "n_seqs": 1331, "length": 429, "gap_rates": [0.2975206611570248, 0.2599549211119459, 0.2434259954921112, 0.2434259954921112, 0.24267468069120962, 0.24492862509391436, 0.3148009015777611, 0.2997746055597295, 0.2870022539444027, 0.2832456799398948, 0.9338842975206612, 0.5154019534184824, 0.512396694214876, 0.3921863260706236, 0.6483846731780616, 0.3673929376408715, 0.33809166040571, 0.24192336589030805, 0.23065364387678436, 0.2299023290758828, 0.22839969947407965, 0.22839969947407965, 0.22839969947407965, 0.22764838467317805, 0.22764838467317805, 0.898572501878287, 0.8549962434259955, 0.22915101427498122, 0.22689706987227648, 0.22915101427498122, 0.2261457550713749, 0.8459804658151766, 0.9376408715251691, 0.8955672426746807, 0.8031555221637866, 0.26897069872276486, 0.23441021788129227, 0.23140495867768596, 0.24192336589030805, 0.22764838467317805, 0.22689706987227648, 0.22464312546957174, 0.8354620586025545, 0.6386175807663411, 0.8039068369646882, 0.459053343350864, 0.4380165289256198, 0.3711495116453794, 0.318557475582269, 0.2734785875281743, 0.24042073628850488, 0.22163786626596543, 0.21187077385424494, 0.21712997746055598, 0.20360631104432758, 0.20060105184072127, 0.1960931630353118, 0.1960931630353118, 0.1930879038317055, 0.18632607062359127, 0.18632607062359127, 0.18632607062359127, 0.1855747558226897, 0.18482344102178813, 0.2997746055597295, 0.9098422238918107, 0.8752817430503381, 0.49436513899323814, 0.3854244928625094, 0.20811419984973703, 0.18782870022539444, 0.18181818181818182, 0.17956423741547708, 0.1750563486100676, 0.17430503380916604, 0.17355371900826447, 0.17355371900826447, 0.1720510894064613, 0.17355371900826447, 0.9301277235161532, 0.7933884297520661, 0.17430503380916604, 0.21337340345604808, 0.19459053343350863, 0.17430503380916604, 0.2734785875281743, 0.1720510894064613, 0.16979714500375656, 0.169045830202855, 0.16829451540195342, 0.16604057099924868, 0.16453794139744554, 0.16078136739293764, 0.1615326821938392, 0.1615326821938392, 0.1622839969947408, 0.1750563486100676, 0.169045830202855, 0.9331329827197595, 0.9451540195341849, 0.9346356123215628, 0.9316303531179564, 0.1720510894064613, 0.20285499624342598, 0.9188580015026296, 0.22088655146506386, 0.873779113448535, 0.4154770848985725, 0.29601803155522166, 0.8099173553719008, 0.9211119459053343, 0.8700225394440271, 0.791885800150263, 0.6010518407212622, 0.23441021788129227, 0.1728024042073629, 0.29601803155522166, 0.1592787377911345, 0.16979714500375656, 0.169045830202855, 0.16078136739293764, 0.16303531179564237, 0.16829451540195342, 0.16378662659654394, 0.1615326821938392, 0.16303531179564237, 0.1622839969947408, 0.20285499624342598, 0.19459053343350863, 0.2336589030803907, 0.188580015026296, 0.17881292261457551, 0.20135236664162284, 0.21036814425244177, 0.29526671675432004, 0.24868519909842224, 0.27948910593538695, 0.24868519909842224, 0.9308790383170549, 0.8752817430503381, 0.5740045078888054, 0.4552967693463561, 0.1615326821938392, 0.15702479338842976, 0.15477084898572502, 0.15477084898572502, 0.5927873779113448, 0.15477084898572502, 0.15477084898572502, 0.15026296018031554, 0.14951164537941397, 0.15251690458302028, 0.41021788129226144, 0.15777610818933133, 0.14800901577761083, 0.14650638617580766, 0.1450037565740045, 0.14425244177310292, 0.14199849737039819, 0.14350112697220135, 0.14350112697220135, 0.14350112697220135, 0.14274981217129978, 0.14800901577761083, 0.14049586776859505, 0.1555221637866266, 0.8474830954169797, 0.941397445529677, 0.821938392186326, 0.1382419233658903, 0.13749060856498874, 0.8106686701728024, 0.13673929376408714, 0.1382419233658903, 0.13974455296769348, 0.13899323816679188, 0.13899323816679188, 0.13749060856498874, 0.13673929376408714, 0.13749060856498874, 0.13749060856498874, 0.13598797896318557, 0.1382419233658903, 0.13448534936138243, 0.13598797896318557, 0.15026296018031554, 0.13373403456048083, 0.13072877535687452, 0.32982719759579265, 0.24567993989481593, 0.6303531179564238, 0.6363636363636364, 0.6416228399699474, 0.642374154770849, 0.6694214876033058, 0.7520661157024794, 0.8670172802404207, 0.9286250939143501, 0.9068369646882044, 0.8174305033809166, 0.7212622088655146, 0.6528925619834711, 0.642374154770849, 0.6386175807663411, 0.6341096919609316, 0.6205860255447032, 0.18031555221637866, 0.20736288504883546, 0.1728024042073629, 0.16303531179564237, 0.2336589030803907, 0.19233658903080392, 0.45830202854996244, 0.38091660405709993, 0.13148009015777612, 0.13072877535687452, 0.12697220135236664, 0.12622088655146507, 0.12622088655146507, 0.12546957175056347, 0.12546957175056347, 0.12697220135236664, 0.12546957175056347, 0.12697220135236664, 0.12697220135236664, 0.1284748309541698, 0.1585274229902329, 0.5965439519158527, 0.5522163786626596, 0.9023290758827949, 0.6273478587528174, 0.14800901577761083, 0.14274981217129978, 0.13974455296769348, 0.13749060856498874, 0.13974455296769348, 0.13899323816679188, 0.14049586776859505, 0.7791134485349361, 0.14049586776859505, 0.14124718256949662, 0.14049586776859505, 0.13899323816679188, 0.13899323816679188, 0.13899323816679188, 0.5311795642374155, 0.8527422990232908, 0.8903080390683696, 0.9135987978963186, 0.8812922614575507, 0.5574755822689706, 0.5229151014274981, 0.1450037565740045, 0.24492862509391436, 0.8670172802404207, 0.66190833959429, 0.2359128474830954, 0.29451540195341847, 0.8700225394440271, 0.9113448534936138, 0.8963185574755823, 0.8632607062359129, 0.17129977460555973, 0.14800901577761083, 0.14650638617580766, 0.14350112697220135, 0.14124718256949662, 0.14049586776859505, 0.15026296018031554, 0.14650638617580766, 0.13899323816679188, 0.1457550713749061, 0.14274981217129978, 0.1382419233658903, 0.9368895567242674, 0.13974455296769348, 0.14951164537941397, 0.8527422990232908, 0.9226145755071374, 0.6919609316303531, 0.18482344102178813, 0.16979714500375656, 0.23065364387678436, 0.24793388429752067, 0.18707738542449287, 0.13072877535687452, 0.13148009015777612, 0.1322314049586777, 0.1322314049586777, 0.1322314049586777, 0.13148009015777612, 0.13072877535687452, 0.13072877535687452, 0.1217129977460556, 0.1217129977460556, 0.1217129977460556, 0.11870773854244929, 0.11945905334335086, 0.11870773854244929, 0.11870773854244929, 0.11870773854244929, 0.13072877535687452, 0.1277235161532682, 0.13899323816679188, 0.9278737791134485, 0.9361382419233659, 0.8061607813673929, 0.33809166040571, 0.23741547708489857, 0.7205108940646131, 0.9451540195341849, 0.8106686701728024, 0.7152516904583021, 0.13749060856498874, 0.12096168294515403, 0.11645379413974455, 0.11570247933884298, 0.1179564237415477, 0.8842975206611571, 0.9135987978963186, 0.8918106686701728, 0.8805409466566492, 0.1179564237415477, 0.13072877535687452, 0.4387678437265214, 0.1247182569496619, 0.12396694214876033, 0.1217129977460556, 0.12021036814425244, 0.13448534936138243, 0.11870773854244929, 0.1179564237415477, 0.11945905334335086, 0.11870773854244929, 0.1179564237415477, 0.11645379413974455, 0.11570247933884298, 0.11570247933884298, 0.1179564237415477, 0.1179564237415477, 0.11870773854244929, 0.11870773854244929, 0.11945905334335086, 0.135236664162284, 0.2096168294515402, 0.4147257700976709, 0.32231404958677684, 0.2299023290758828, 0.5274229902329076, 0.16003005259203607, 0.11720510894064613, 0.11645379413974455, 0.11570247933884298, 0.11570247933884298, 0.11645379413974455, 0.11645379413974455, 0.11645379413974455, 0.11645379413974455, 0.11645379413974455, 0.11645379413974455, 0.135236664162284, 0.12096168294515403, 0.1322314049586777, 0.8617580766341096, 0.17806160781367392, 0.7610818933132982, 0.5957926371149511, 0.12396694214876033, 0.12021036814425244, 0.1277235161532682, 0.14124718256949662, 0.8970698722764838, 0.26521412471825695, 0.15401953418482345, 0.14274981217129978, 0.13598797896318557, 0.1284748309541698, 0.13448534936138243, 0.1322314049586777, 0.13673929376408714, 0.4154770848985725, 0.39368895567242673, 0.20060105184072127, 0.17731029301277235, 0.20060105184072127, 0.17355371900826447, 0.16453794139744554, 0.16604057099924868, 0.16378662659654394, 0.2396694214876033, 0.31179564237415475, 0.3418482344102179, 0.21487603305785125, 0.15777610818933133, 0.8106686701728024, 0.9090909090909091, 0.9459053343350864, 0.8655146506386175, 0.7422990232907588, 0.18707738542449287, 0.14425244177310292, 0.14274981217129978, 0.22764838467317805, 0.1382419233658903, 0.1322314049586777, 0.13298271975957926, 0.13373403456048083, 0.1322314049586777, 0.13448534936138243, 0.13673929376408714, 0.1382419233658903, 0.786626596543952, 0.8655146506386175, 0.7145003756574004, 0.19759579263711496, 0.188580015026296, 0.8189331329827197, 0.1615326821938392, 0.1322314049586777, 0.13298271975957926, 0.1322314049586777, 0.13298271975957926, 0.13298271975957926, 0.13298271975957926, 0.13298271975957926, 0.13448534936138243, 0.15477084898572502, 0.20811419984973703, 0.6979714500375658], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/McrBC.gap.json b/pfam_gap_rates/McrBC.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..8c67714a49c921f067c49115e1e8b3336cbdb0c9
--- /dev/null
+++ b/pfam_gap_rates/McrBC.gap.json
@@ -0,0 +1 @@
+{"family": "McrBC", "n_seqs": 286, "length": 376, "gap_rates": [0.6853146853146853, 0.5699300699300699, 0.5, 0.4405594405594406, 0.43006993006993005, 0.4160839160839161, 0.40559440559440557, 0.40559440559440557, 0.40559440559440557, 0.40559440559440557, 0.40559440559440557, 0.40559440559440557, 0.40559440559440557, 0.48951048951048953, 0.3951048951048951, 0.6503496503496503, 0.3881118881118881, 0.3881118881118881, 0.3881118881118881, 0.38461538461538464, 0.38461538461538464, 0.38461538461538464, 0.38461538461538464, 0.38461538461538464, 0.38461538461538464, 0.3881118881118881, 0.3881118881118881, 0.3986013986013986, 0.45454545454545453, 0.7132867132867133, 0.9055944055944056, 0.8671328671328671, 0.6573426573426573, 0.7307692307692307, 0.7132867132867133, 0.6363636363636364, 0.8601398601398601, 0.8951048951048951, 0.9335664335664335, 0.9405594405594405, 0.9265734265734266, 0.8881118881118881, 0.8601398601398601, 0.5, 0.47202797202797203, 0.4370629370629371, 0.2937062937062937, 0.1993006993006993, 0.17832167832167833, 0.17132867132867133, 0.17132867132867133, 0.17132867132867133, 0.22727272727272727, 0.21328671328671328, 0.19230769230769232, 0.1888111888111888, 0.16783216783216784, 0.17482517482517482, 0.17132867132867133, 0.15384615384615385, 0.15034965034965034, 0.16783216783216784, 0.15734265734265734, 0.1853146853146853, 0.15034965034965034, 0.13286713286713286, 0.12237762237762238, 0.13636363636363635, 0.12237762237762238, 0.11888111888111888, 0.13636363636363635, 0.15734265734265734, 0.8531468531468531, 0.15034965034965034, 0.11538461538461539, 0.0979020979020979, 0.09090909090909091, 0.07692307692307693, 0.08391608391608392, 0.09090909090909091, 0.08391608391608392, 0.08041958041958042, 0.07342657342657342, 0.06993006993006994, 0.06993006993006994, 0.06993006993006994, 0.06993006993006994, 0.06643356643356643, 0.06643356643356643, 0.06643356643356643, 0.07342657342657342, 0.06643356643356643, 0.06993006993006994, 0.06293706293706294, 0.06643356643356643, 0.06643356643356643, 0.06293706293706294, 0.06293706293706294, 0.06293706293706294, 0.06293706293706294, 0.06293706293706294, 0.06293706293706294, 0.06293706293706294, 0.06293706293706294, 0.06293706293706294, 0.06293706293706294, 0.06293706293706294, 0.06293706293706294, 0.06293706293706294, 0.06293706293706294, 0.06293706293706294, 0.06293706293706294, 0.06293706293706294, 0.06293706293706294, 0.06293706293706294, 0.10139860139860139, 0.07692307692307693, 0.08041958041958042, 0.07692307692307693, 0.07342657342657342, 0.08041958041958042, 0.08741258741258741, 0.08391608391608392, 0.9405594405594405, 0.09090909090909091, 0.07342657342657342, 0.05944055944055944, 0.055944055944055944, 0.055944055944055944, 0.055944055944055944, 0.055944055944055944, 0.055944055944055944, 0.055944055944055944, 0.055944055944055944, 0.055944055944055944, 0.05944055944055944, 0.05944055944055944, 0.05944055944055944, 0.05944055944055944, 0.05944055944055944, 0.05944055944055944, 0.05944055944055944, 0.05944055944055944, 0.055944055944055944, 0.055944055944055944, 0.05244755244755245, 0.05244755244755245, 0.05244755244755245, 0.05244755244755245, 0.05244755244755245, 0.05244755244755245, 0.05244755244755245, 0.05244755244755245, 0.05244755244755245, 0.05944055944055944, 0.055944055944055944, 0.05944055944055944, 0.05244755244755245, 0.8426573426573427, 0.8461538461538461, 0.8706293706293706, 0.9195804195804196, 0.9440559440559441, 0.9335664335664335, 0.8776223776223776, 0.8566433566433567, 0.8461538461538461, 0.8251748251748252, 0.05244755244755245, 0.06993006993006994, 0.06643356643356643, 0.07692307692307693, 0.07692307692307693, 0.06993006993006994, 0.06993006993006994, 0.9405594405594405, 0.7062937062937062, 0.055944055944055944, 0.055944055944055944, 0.05244755244755245, 0.05244755244755245, 0.05244755244755245, 0.05244755244755245, 0.05244755244755245, 0.05244755244755245, 0.05244755244755245, 0.9475524475524476, 0.9055944055944056, 0.05944055944055944, 0.05944055944055944, 0.055944055944055944, 0.06293706293706294, 0.06293706293706294, 0.06643356643356643, 0.06993006993006994, 0.16783216783216784, 0.06993006993006994, 0.06993006993006994, 0.06643356643356643, 0.05944055944055944, 0.08041958041958042, 0.09090909090909091, 0.06643356643356643, 0.05944055944055944, 0.08391608391608392, 0.05244755244755245, 0.05244755244755245, 0.04895104895104895, 0.04895104895104895, 0.04895104895104895, 0.05244755244755245, 0.05244755244755245, 0.05244755244755245, 0.05244755244755245, 0.05244755244755245, 0.055944055944055944, 0.055944055944055944, 0.05244755244755245, 0.05244755244755245, 0.05244755244755245, 0.05244755244755245, 0.05244755244755245, 0.05244755244755245, 0.05244755244755245, 0.05244755244755245, 0.05244755244755245, 0.9300699300699301, 0.9230769230769231, 0.10139860139860139, 0.06993006993006994, 0.05944055944055944, 0.05244755244755245, 0.055944055944055944, 0.05244755244755245, 0.05244755244755245, 0.045454545454545456, 0.04895104895104895, 0.05244755244755245, 0.9370629370629371, 0.05244755244755245, 0.055944055944055944, 0.05244755244755245, 0.04895104895104895, 0.04895104895104895, 0.04895104895104895, 0.8811188811188811, 0.8776223776223776, 0.05244755244755245, 0.04895104895104895, 0.9265734265734266, 0.9230769230769231, 0.045454545454545456, 0.045454545454545456, 0.045454545454545456, 0.045454545454545456, 0.045454545454545456, 0.045454545454545456, 0.045454545454545456, 0.045454545454545456, 0.045454545454545456, 0.045454545454545456, 0.045454545454545456, 0.045454545454545456, 0.045454545454545456, 0.04895104895104895, 0.8706293706293706, 0.9230769230769231, 0.9335664335664335, 0.8881118881118881, 0.7412587412587412, 0.4020979020979021, 0.11888111888111888, 0.0979020979020979, 0.06643356643356643, 0.05944055944055944, 0.05944055944055944, 0.06993006993006994, 0.07342657342657342, 0.06993006993006994, 0.06643356643356643, 0.06643356643356643, 0.06643356643356643, 0.06643356643356643, 0.05944055944055944, 0.07692307692307693, 0.07692307692307693, 0.07692307692307693, 0.8986013986013986, 0.0944055944055944, 0.1048951048951049, 0.09090909090909091, 0.08741258741258741, 0.9475524475524476, 0.8741258741258742, 0.26573426573426573, 0.22727272727272727, 0.23076923076923078, 0.26223776223776224, 0.22377622377622378, 0.8251748251748252, 0.9230769230769231, 0.8881118881118881, 0.7762237762237763, 0.0979020979020979, 0.06643356643356643, 0.06643356643356643, 0.04895104895104895, 0.045454545454545456, 0.04895104895104895, 0.04895104895104895, 0.8111888111888111, 0.04895104895104895, 0.05244755244755245, 0.2202797202797203, 0.08041958041958042, 0.06993006993006994, 0.14685314685314685, 0.25524475524475526, 0.13636363636363635, 0.10139860139860139, 0.9125874125874126, 0.9405594405594405, 0.8986013986013986, 0.055944055944055944, 0.04895104895104895, 0.04195804195804196, 0.04195804195804196, 0.04195804195804196, 0.04195804195804196, 0.04195804195804196, 0.045454545454545456, 0.04195804195804196, 0.07692307692307693, 0.16783216783216784, 0.36013986013986016, 0.45104895104895104, 0.5174825174825175, 0.8671328671328671, 0.9020979020979021, 0.6538461538461539, 0.36013986013986016, 0.3111888111888112, 0.24125874125874125, 0.15034965034965034, 0.09090909090909091, 0.06993006993006994, 0.06293706293706294, 0.055944055944055944, 0.055944055944055944, 0.055944055944055944, 0.055944055944055944, 0.05944055944055944, 0.05944055944055944, 0.05944055944055944, 0.05944055944055944, 0.05944055944055944, 0.05944055944055944, 0.05944055944055944, 0.06993006993006994, 0.09090909090909091, 0.13286713286713286, 0.15034965034965034, 0.17132867132867133, 0.17832167832167833, 0.2202797202797203, 0.23426573426573427, 0.2517482517482518, 0.7692307692307693, 0.8706293706293706, 0.8881118881118881, 0.8531468531468531, 0.7482517482517482, 0.2727272727272727, 0.2762237762237762, 0.3041958041958042, 0.36363636363636365], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/MdoG.gap.json b/pfam_gap_rates/MdoG.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..fd0ed576abca1b70230e3c8c0638c05930c89ab6
--- /dev/null
+++ b/pfam_gap_rates/MdoG.gap.json
@@ -0,0 +1 @@
+{"family": "MdoG", "n_seqs": 317, "length": 508, "gap_rates": [0.15141955835962145, 0.11356466876971609, 0.06309148264984227, 0.03470031545741325, 0.025236593059936908, 0.022082018927444796, 0.01892744479495268, 0.01892744479495268, 0.01892744479495268, 0.01892744479495268, 0.01892744479495268, 0.01892744479495268, 0.01892744479495268, 0.01892744479495268, 0.01892744479495268, 0.01892744479495268, 0.01892744479495268, 0.01892744479495268, 0.01892744479495268, 0.01892744479495268, 0.01892744479495268, 0.015772870662460567, 0.21451104100946372, 0.03470031545741325, 0.025236593059936908, 0.022082018927444796, 0.01892744479495268, 0.015772870662460567, 0.012618296529968454, 0.012618296529968454, 0.015772870662460567, 0.025236593059936908, 0.012618296529968454, 0.012618296529968454, 0.012618296529968454, 0.012618296529968454, 0.012618296529968454, 0.012618296529968454, 0.012618296529968454, 0.012618296529968454, 0.012618296529968454, 0.015772870662460567, 0.015772870662460567, 0.012618296529968454, 0.015772870662460567, 0.012618296529968454, 0.012618296529968454, 0.012618296529968454, 0.012618296529968454, 0.9274447949526814, 0.012618296529968454, 0.015772870662460567, 0.031545741324921134, 0.05362776025236593, 0.15141955835962145, 0.03470031545741325, 0.028391167192429023, 0.028391167192429023, 0.012618296529968454, 0.012618296529968454, 0.012618296529968454, 0.012618296529968454, 0.012618296529968454, 0.012618296529968454, 0.012618296529968454, 0.012618296529968454, 0.022082018927444796, 0.012618296529968454, 0.012618296529968454, 0.012618296529968454, 0.012618296529968454, 0.012618296529968454, 0.012618296529968454, 0.012618296529968454, 0.012618296529968454, 0.012618296529968454, 0.012618296529968454, 0.9463722397476341, 0.8990536277602523, 0.012618296529968454, 0.012618296529968454, 0.012618296529968454, 0.015772870662460567, 0.015772870662460567, 0.015772870662460567, 0.015772870662460567, 0.015772870662460567, 0.015772870662460567, 0.015772870662460567, 0.015772870662460567, 0.015772870662460567, 0.015772870662460567, 0.015772870662460567, 0.015772870662460567, 0.015772870662460567, 0.015772870662460567, 0.01892744479495268, 0.01892744479495268, 0.01892744479495268, 0.8391167192429022, 0.9463722397476341, 0.7066246056782335, 0.0914826498422713, 0.11041009463722397, 0.04100946372239748, 0.03470031545741325, 0.028391167192429023, 0.028391167192429023, 0.028391167192429023, 0.028391167192429023, 0.031545741324921134, 0.9369085173501577, 0.01892744479495268, 0.015772870662460567, 0.015772870662460567, 0.015772870662460567, 0.015772870662460567, 0.015772870662460567, 0.015772870662460567, 0.015772870662460567, 0.015772870662460567, 0.031545741324921134, 0.031545741324921134, 0.03785488958990536, 0.03785488958990536, 0.1892744479495268, 0.21451104100946372, 0.167192429022082, 0.1167192429022082, 0.015772870662460567, 0.015772870662460567, 0.015772870662460567, 0.015772870662460567, 0.015772870662460567, 0.015772870662460567, 0.015772870662460567, 0.015772870662460567, 0.015772870662460567, 0.015772870662460567, 0.015772870662460567, 0.015772870662460567, 0.015772870662460567, 0.015772870662460567, 0.015772870662460567, 0.015772870662460567, 0.015772870662460567, 0.015772870662460567, 0.01892744479495268, 0.015772870662460567, 0.015772870662460567, 0.015772870662460567, 0.015772870662460567, 0.015772870662460567, 0.015772870662460567, 0.015772870662460567, 0.015772870662460567, 0.015772870662460567, 0.015772870662460567, 0.015772870662460567, 0.015772870662460567, 0.015772870662460567, 0.015772870662460567, 0.015772870662460567, 0.015772870662460567, 0.04416403785488959, 0.022082018927444796, 0.01892744479495268, 0.8832807570977917, 0.015772870662460567, 0.015772870662460567, 0.015772870662460567, 0.015772870662460567, 0.015772870662460567, 0.015772870662460567, 0.015772870662460567, 0.015772870662460567, 0.015772870662460567, 0.015772870662460567, 0.015772870662460567, 0.015772870662460567, 0.04416403785488959, 0.031545741324921134, 0.07570977917981073, 0.06624605678233439, 0.050473186119873815, 0.03785488958990536, 0.015772870662460567, 0.015772870662460567, 0.015772870662460567, 0.015772870662460567, 0.015772870662460567, 0.015772870662460567, 0.015772870662460567, 0.015772870662460567, 0.012618296529968454, 0.012618296529968454, 0.012618296529968454, 0.012618296529968454, 0.012618296529968454, 0.012618296529968454, 0.012618296529968454, 0.012618296529968454, 0.012618296529968454, 0.012618296529968454, 0.012618296529968454, 0.012618296529968454, 0.012618296529968454, 0.012618296529968454, 0.012618296529968454, 0.012618296529968454, 0.9116719242902208, 0.012618296529968454, 0.9400630914826499, 0.012618296529968454, 0.012618296529968454, 0.012618296529968454, 0.012618296529968454, 0.012618296529968454, 0.012618296529968454, 0.012618296529968454, 0.012618296529968454, 0.012618296529968454, 0.012618296529968454, 0.012618296529968454, 0.012618296529968454, 0.012618296529968454, 0.012618296529968454, 0.012618296529968454, 0.012618296529968454, 0.012618296529968454, 0.012618296529968454, 0.012618296529968454, 0.012618296529968454, 0.012618296529968454, 0.012618296529968454, 0.012618296529968454, 0.012618296529968454, 0.012618296529968454, 0.012618296529968454, 0.012618296529968454, 0.012618296529968454, 0.012618296529968454, 0.012618296529968454, 0.012618296529968454, 0.012618296529968454, 0.012618296529968454, 0.012618296529968454, 0.012618296529968454, 0.012618296529968454, 0.9463722397476341, 0.012618296529968454, 0.03785488958990536, 0.04100946372239748, 0.012618296529968454, 0.012618296529968454, 0.012618296529968454, 0.012618296529968454, 0.012618296529968454, 0.012618296529968454, 0.012618296529968454, 0.012618296529968454, 0.012618296529968454, 0.012618296529968454, 0.012618296529968454, 0.012618296529968454, 0.012618296529968454, 0.012618296529968454, 0.012618296529968454, 0.015772870662460567, 0.012618296529968454, 0.022082018927444796, 0.012618296529968454, 0.022082018927444796, 0.012618296529968454, 0.012618296529968454, 0.012618296529968454, 0.012618296529968454, 0.012618296529968454, 0.012618296529968454, 0.012618296529968454, 0.012618296529968454, 0.012618296529968454, 0.012618296529968454, 0.012618296529968454, 0.012618296529968454, 0.012618296529968454, 0.012618296529968454, 0.012618296529968454, 0.012618296529968454, 0.012618296529968454, 0.012618296529968454, 0.012618296529968454, 0.012618296529968454, 0.012618296529968454, 0.012618296529968454, 0.012618296529968454, 0.012618296529968454, 0.012618296529968454, 0.012618296529968454, 0.012618296529968454, 0.012618296529968454, 0.012618296529968454, 0.012618296529968454, 0.012618296529968454, 0.012618296529968454, 0.012618296529968454, 0.012618296529968454, 0.012618296529968454, 0.012618296529968454, 0.012618296529968454, 0.012618296529968454, 0.012618296529968454, 0.012618296529968454, 0.10094637223974763, 0.012618296529968454, 0.015772870662460567, 0.012618296529968454, 0.012618296529968454, 0.012618296529968454, 0.012618296529968454, 0.012618296529968454, 0.012618296529968454, 0.012618296529968454, 0.012618296529968454, 0.012618296529968454, 0.012618296529968454, 0.012618296529968454, 0.012618296529968454, 0.012618296529968454, 0.012618296529968454, 0.012618296529968454, 0.012618296529968454, 0.012618296529968454, 0.012618296529968454, 0.012618296529968454, 0.012618296529968454, 0.012618296529968454, 0.012618296529968454, 0.012618296529968454, 0.012618296529968454, 0.012618296529968454, 0.012618296529968454, 0.012618296529968454, 0.012618296529968454, 0.012618296529968454, 0.012618296529968454, 0.012618296529968454, 0.012618296529968454, 0.012618296529968454, 0.012618296529968454, 0.012618296529968454, 0.012618296529968454, 0.012618296529968454, 0.012618296529968454, 0.012618296529968454, 0.012618296529968454, 0.012618296529968454, 0.012618296529968454, 0.012618296529968454, 0.015772870662460567, 0.015772870662460567, 0.01892744479495268, 0.015772870662460567, 0.015772870662460567, 0.012618296529968454, 0.00946372239747634, 0.012618296529968454, 0.00946372239747634, 0.00946372239747634, 0.00946372239747634, 0.00946372239747634, 0.00946372239747634, 0.00946372239747634, 0.00946372239747634, 0.00946372239747634, 0.00946372239747634, 0.00946372239747634, 0.00946372239747634, 0.00946372239747634, 0.00946372239747634, 0.00946372239747634, 0.015772870662460567, 0.7160883280757098, 0.8990536277602523, 0.04416403785488959, 0.056782334384858045, 0.00946372239747634, 0.00946372239747634, 0.00946372239747634, 0.00946372239747634, 0.00946372239747634, 0.00946372239747634, 0.00946372239747634, 0.00946372239747634, 0.00946372239747634, 0.00946372239747634, 0.00946372239747634, 0.00946372239747634, 0.015772870662460567, 0.9053627760252366, 0.8958990536277602, 0.028391167192429023, 0.05993690851735016, 0.5299684542586751, 0.1861198738170347, 0.8422712933753943, 0.8958990536277602, 0.580441640378549, 0.23974763406940064, 0.28391167192429023, 0.26498422712933756, 0.14511041009463724, 0.807570977917981, 0.8580441640378549, 0.6782334384858044, 0.056782334384858045, 0.04100946372239748, 0.031545741324921134, 0.00946372239747634, 0.00946372239747634, 0.00946372239747634, 0.00946372239747634, 0.00946372239747634, 0.00946372239747634, 0.00946372239747634, 0.00946372239747634, 0.00946372239747634, 0.00946372239747634, 0.00946372239747634, 0.015772870662460567, 0.06309148264984227, 0.05993690851735016, 0.056782334384858045, 0.943217665615142, 0.7665615141955836, 0.06309148264984227, 0.04416403785488959, 0.01892744479495268, 0.416403785488959, 0.012618296529968454, 0.00946372239747634, 0.015772870662460567, 0.006309148264984227, 0.006309148264984227, 0.006309148264984227, 0.006309148264984227, 0.006309148264984227, 0.006309148264984227, 0.006309148264984227, 0.7350157728706624, 0.006309148264984227, 0.006309148264984227, 0.006309148264984227, 0.006309148264984227, 0.006309148264984227, 0.006309148264984227, 0.006309148264984227, 0.006309148264984227, 0.006309148264984227, 0.006309148264984227, 0.00946372239747634, 0.01892744479495268, 0.031545741324921134, 0.9337539432176656, 0.8927444794952681, 0.006309148264984227, 0.006309148264984227, 0.006309148264984227, 0.006309148264984227, 0.00946372239747634, 0.00946372239747634, 0.00946372239747634, 0.00946372239747634, 0.00946372239747634, 0.00946372239747634, 0.00946372239747634, 0.807570977917981, 0.00946372239747634, 0.031545741324921134, 0.03785488958990536, 0.8580441640378549, 0.9463722397476341, 0.943217665615142, 0.722397476340694, 0.00946372239747634, 0.00946372239747634, 0.00946372239747634, 0.00946372239747634, 0.00946372239747634, 0.00946372239747634, 0.00946372239747634, 0.00946372239747634, 0.00946372239747634, 0.00946372239747634, 0.00946372239747634, 0.012618296529968454, 0.01892744479495268, 0.015772870662460567, 0.015772870662460567, 0.015772870662460567, 0.015772870662460567, 0.015772870662460567, 0.01892744479495268, 0.01892744479495268, 0.031545741324921134, 0.0694006309148265, 0.13249211356466878, 0.24290220820189273], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Med12-LCEWAV.gap.json b/pfam_gap_rates/Med12-LCEWAV.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e99f89521bbd321c6dc0895e141f1fa11c865936
--- /dev/null
+++ b/pfam_gap_rates/Med12-LCEWAV.gap.json
@@ -0,0 +1 @@
+{"family": "Med12-LCEWAV", "n_seqs": 150, "length": 559, "gap_rates": [0.64, 0.58, 0.5733333333333334, 0.5666666666666667, 0.5666666666666667, 0.5666666666666667, 0.5666666666666667, 0.5666666666666667, 0.5666666666666667, 0.5666666666666667, 0.5666666666666667, 0.5666666666666667, 0.5666666666666667, 0.5666666666666667, 0.5666666666666667, 0.5666666666666667, 0.5666666666666667, 0.5666666666666667, 0.5666666666666667, 0.5666666666666667, 0.5666666666666667, 0.5666666666666667, 0.5666666666666667, 0.5666666666666667, 0.5933333333333334, 0.5933333333333334, 0.5933333333333334, 0.6066666666666667, 0.7266666666666667, 0.7733333333333333, 0.7533333333333333, 0.74, 0.7533333333333333, 0.7333333333333333, 0.7133333333333334, 0.7, 0.6666666666666666, 0.6466666666666666, 0.6466666666666666, 0.6333333333333333, 0.9333333333333333, 0.8333333333333334, 0.6333333333333333, 0.6266666666666667, 0.6066666666666667, 0.62, 0.6, 0.6, 0.6066666666666667, 0.6, 0.6066666666666667, 0.5933333333333334, 0.5866666666666667, 0.58, 0.5733333333333334, 0.5666666666666667, 0.56, 0.5866666666666667, 0.5733333333333334, 0.58, 0.5866666666666667, 0.5733333333333334, 0.5533333333333333, 0.5266666666666666, 0.48, 0.46, 0.43333333333333335, 0.43333333333333335, 0.42, 0.4, 0.44, 0.43333333333333335, 0.4, 0.3933333333333333, 0.3933333333333333, 0.3933333333333333, 0.38, 0.38, 0.38, 0.38, 0.38, 0.38, 0.37333333333333335, 0.37333333333333335, 0.37333333333333335, 0.36666666666666664, 0.36, 0.36, 0.36, 0.36, 0.38, 0.38, 0.38, 0.38, 0.38, 0.38, 0.38, 0.38, 0.38, 0.38, 0.38, 0.38, 0.9266666666666666, 0.7066666666666667, 0.38666666666666666, 0.38666666666666666, 0.38, 0.38, 0.3933333333333333, 0.4, 0.4, 0.41333333333333333, 0.44, 0.5666666666666667, 0.62, 0.62, 0.9066666666666666, 0.9066666666666666, 0.9066666666666666, 0.38, 0.38, 0.38, 0.38, 0.38, 0.38, 0.38, 0.38, 0.38, 0.38, 0.38, 0.38, 0.38, 0.38, 0.38, 0.38, 0.38, 0.38, 0.38, 0.37333333333333335, 0.6666666666666666, 0.66, 0.4066666666666667, 0.4066666666666667, 0.38, 0.3466666666666667, 0.35333333333333333, 0.35333333333333333, 0.3466666666666667, 0.3466666666666667, 0.3466666666666667, 0.3466666666666667, 0.3466666666666667, 0.34, 0.35333333333333333, 0.36, 0.35333333333333333, 0.35333333333333333, 0.35333333333333333, 0.35333333333333333, 0.35333333333333333, 0.35333333333333333, 0.35333333333333333, 0.35333333333333333, 0.35333333333333333, 0.35333333333333333, 0.35333333333333333, 0.35333333333333333, 0.35333333333333333, 0.35333333333333333, 0.36, 0.36666666666666664, 0.36666666666666664, 0.36666666666666664, 0.36, 0.4, 0.35333333333333333, 0.3466666666666667, 0.3466666666666667, 0.36, 0.36, 0.38, 0.36666666666666664, 0.35333333333333333, 0.35333333333333333, 0.35333333333333333, 0.35333333333333333, 0.3466666666666667, 0.34, 0.3333333333333333, 0.3333333333333333, 0.3333333333333333, 0.34, 0.34, 0.3466666666666667, 0.4, 0.3933333333333333, 0.41333333333333333, 0.36666666666666664, 0.36, 0.3333333333333333, 0.3333333333333333, 0.34, 0.34, 0.3333333333333333, 0.32, 0.32, 0.32, 0.32, 0.32, 0.32, 0.32, 0.32, 0.32, 0.32, 0.32, 0.32, 0.32666666666666666, 0.32666666666666666, 0.3333333333333333, 0.35333333333333333, 0.5533333333333333, 0.5533333333333333, 0.56, 0.5933333333333334, 0.54, 0.8733333333333333, 0.9133333333333333, 0.94, 0.9466666666666667, 0.9466666666666667, 0.9466666666666667, 0.92, 0.9066666666666666, 0.8733333333333333, 0.84, 0.7933333333333333, 0.7666666666666667, 0.7333333333333333, 0.6666666666666666, 0.3466666666666667, 0.32, 0.30666666666666664, 0.29333333333333333, 0.28, 0.26666666666666666, 0.26666666666666666, 0.9333333333333333, 0.26, 0.25333333333333335, 0.24666666666666667, 0.24666666666666667, 0.24666666666666667, 0.24666666666666667, 0.24666666666666667, 0.24666666666666667, 0.24666666666666667, 0.24666666666666667, 0.24666666666666667, 0.24666666666666667, 0.24666666666666667, 0.24666666666666667, 0.24666666666666667, 0.24666666666666667, 0.25333333333333335, 0.25333333333333335, 0.25333333333333335, 0.24666666666666667, 0.24666666666666667, 0.24666666666666667, 0.24666666666666667, 0.24666666666666667, 0.24666666666666667, 0.24666666666666667, 0.28, 0.3, 0.31333333333333335, 0.31333333333333335, 0.32666666666666666, 0.3466666666666667, 0.34, 0.35333333333333333, 0.36666666666666664, 0.38666666666666666, 0.41333333333333333, 0.5333333333333333, 0.52, 0.5133333333333333, 0.5133333333333333, 0.94, 0.94, 0.9466666666666667, 0.94, 0.9333333333333333, 0.46, 0.4666666666666667, 0.47333333333333333, 0.4866666666666667, 0.48, 0.46, 0.43333333333333335, 0.4066666666666667, 0.4066666666666667, 0.41333333333333333, 0.3933333333333333, 0.4, 0.9333333333333333, 0.5533333333333333, 0.52, 0.52, 0.44, 0.43333333333333335, 0.4066666666666667, 0.38, 0.35333333333333333, 0.9466666666666667, 0.35333333333333333, 0.2733333333333333, 0.2733333333333333, 0.2733333333333333, 0.2733333333333333, 0.2733333333333333, 0.2733333333333333, 0.2733333333333333, 0.2733333333333333, 0.2733333333333333, 0.2733333333333333, 0.28, 0.2733333333333333, 0.2866666666666667, 0.29333333333333333, 0.2866666666666667, 0.30666666666666664, 0.42, 0.38666666666666666, 0.8733333333333333, 0.4, 0.38, 0.36, 0.34, 0.3333333333333333, 0.32, 0.31333333333333335, 0.31333333333333335, 0.31333333333333335, 0.29333333333333333, 0.28, 0.2733333333333333, 0.2733333333333333, 0.2733333333333333, 0.26, 0.26, 0.26, 0.26, 0.26, 0.26, 0.26, 0.26, 0.26, 0.26, 0.26, 0.26, 0.26, 0.26666666666666666, 0.26666666666666666, 0.26666666666666666, 0.26666666666666666, 0.2733333333333333, 0.2733333333333333, 0.2866666666666667, 0.2866666666666667, 0.2866666666666667, 0.2866666666666667, 0.28, 0.28, 0.2866666666666667, 0.2866666666666667, 0.2866666666666667, 0.29333333333333333, 0.3, 0.30666666666666664, 0.31333333333333335, 0.32, 0.5533333333333333, 0.6666666666666666, 0.8533333333333334, 0.88, 0.9133333333333333, 0.94, 0.9466666666666667, 0.9466666666666667, 0.92, 0.8933333333333333, 0.8666666666666667, 0.8533333333333334, 0.5, 0.4666666666666667, 0.44666666666666666, 0.9133333333333333, 0.9466666666666667, 0.9333333333333333, 0.8933333333333333, 0.76, 0.7133333333333334, 0.4866666666666667, 0.4866666666666667, 0.4866666666666667, 0.47333333333333333, 0.43333333333333335, 0.4266666666666667, 0.42, 0.41333333333333333, 0.43333333333333335, 0.44, 0.44, 0.43333333333333335, 0.43333333333333335, 0.44666666666666666, 0.44666666666666666, 0.44666666666666666, 0.44666666666666666, 0.46, 0.4533333333333333, 0.48, 0.48, 0.5, 0.49333333333333335, 0.5, 0.5, 0.5066666666666667, 0.5, 0.5933333333333334, 0.5866666666666667, 0.5933333333333334, 0.6066666666666667, 0.9066666666666666, 0.9133333333333333, 0.9133333333333333, 0.9066666666666666, 0.8866666666666667, 0.5333333333333333, 0.4666666666666667, 0.46, 0.4533333333333333, 0.4533333333333333, 0.78, 0.7466666666666667, 0.44666666666666666, 0.44666666666666666, 0.44666666666666666, 0.44666666666666666, 0.44666666666666666, 0.44666666666666666, 0.46, 0.4866666666666667, 0.4866666666666667, 0.4866666666666667, 0.49333333333333335, 0.8466666666666667, 0.8466666666666667, 0.8466666666666667, 0.8933333333333333, 0.8933333333333333, 0.9, 0.9066666666666666, 0.9066666666666666, 0.9066666666666666, 0.9066666666666666, 0.8933333333333333, 0.8933333333333333, 0.8533333333333334, 0.8466666666666667, 0.8466666666666667, 0.8266666666666667, 0.5333333333333333, 0.5466666666666666, 0.5866666666666667, 0.5266666666666666, 0.52, 0.5266666666666666, 0.5066666666666667, 0.5, 0.49333333333333335, 0.5, 0.5133333333333333, 0.52, 0.5666666666666667, 0.5866666666666667, 0.56, 0.5466666666666666, 0.5533333333333333, 0.58, 0.6, 0.88, 0.9066666666666666, 0.9333333333333333, 0.8866666666666667, 0.8666666666666667, 0.6466666666666666, 0.6333333333333333, 0.5933333333333334, 0.58, 0.8266666666666667, 0.58, 0.5666666666666667, 0.54, 0.5066666666666667, 0.48, 0.49333333333333335, 0.52, 0.5133333333333333, 0.5333333333333333, 0.6066666666666667, 0.47333333333333333, 0.8333333333333334, 0.8533333333333334, 0.86, 0.9066666666666666, 0.9066666666666666, 0.9133333333333333, 0.9333333333333333, 0.9466666666666667, 0.9333333333333333, 0.9266666666666666, 0.9133333333333333, 0.9066666666666666, 0.8933333333333333, 0.8533333333333334, 0.8533333333333334, 0.8266666666666667, 0.46, 0.4533333333333333, 0.4533333333333333, 0.4533333333333333, 0.44666666666666666, 0.44666666666666666, 0.44666666666666666, 0.44666666666666666, 0.44666666666666666, 0.44666666666666666, 0.44666666666666666, 0.44666666666666666, 0.44666666666666666, 0.44666666666666666, 0.46, 0.46, 0.47333333333333333, 0.8866666666666667, 0.46, 0.46, 0.46, 0.46, 0.46, 0.4666666666666667, 0.4666666666666667, 0.4666666666666667, 0.4666666666666667, 0.47333333333333333, 0.47333333333333333, 0.5066666666666667], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Med18.gap.json b/pfam_gap_rates/Med18.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ecc9062fa48c8d152a0bbc1a18db8aac04281617
--- /dev/null
+++ b/pfam_gap_rates/Med18.gap.json
@@ -0,0 +1 @@
+{"family": "Med18", "n_seqs": 251, "length": 291, "gap_rates": [0.5577689243027888, 0.398406374501992, 0.398406374501992, 0.398406374501992, 0.398406374501992, 0.3944223107569721, 0.3904382470119522, 0.3904382470119522, 0.3904382470119522, 0.3904382470119522, 0.3904382470119522, 0.3904382470119522, 0.38645418326693226, 0.38645418326693226, 0.3904382470119522, 0.3904382470119522, 0.38645418326693226, 0.38645418326693226, 0.38645418326693226, 0.38645418326693226, 0.38645418326693226, 0.38645418326693226, 0.38645418326693226, 0.38645418326693226, 0.38645418326693226, 0.38247011952191234, 0.3784860557768924, 0.6932270916334662, 0.41832669322709165, 0.8645418326693227, 0.8605577689243028, 0.3784860557768924, 0.3784860557768924, 0.3784860557768924, 0.3784860557768924, 0.3784860557768924, 0.3784860557768924, 0.38645418326693226, 0.38247011952191234, 0.38247011952191234, 0.38645418326693226, 0.38247011952191234, 0.3904382470119522, 0.9482071713147411, 0.9043824701195219, 0.6135458167330677, 0.6095617529880478, 0.6175298804780877, 0.7529880478087649, 0.7529880478087649, 0.9123505976095617, 0.9362549800796812, 0.9243027888446215, 0.9043824701195219, 0.6812749003984063, 0.6573705179282868, 0.6533864541832669, 0.6414342629482072, 0.545816733067729, 0.545816733067729, 0.5298804780876494, 0.5219123505976095, 0.6055776892430279, 0.5856573705179283, 0.5338645418326693, 0.5258964143426295, 0.5298804780876494, 0.5378486055776892, 0.5418326693227091, 0.549800796812749, 0.545816733067729, 0.5537848605577689, 0.5577689243027888, 0.5577689243027888, 0.5617529880478087, 0.5657370517928287, 0.5776892430278885, 0.5856573705179283, 0.5896414342629482, 0.6215139442231076, 0.749003984063745, 0.796812749003984, 0.8565737051792829, 0.8406374501992032, 0.7250996015936255, 0.7330677290836654, 0.7171314741035857, 0.7131474103585658, 0.7051792828685259, 0.7051792828685259, 0.6932270916334662, 0.6892430278884463, 0.6932270916334662, 0.7569721115537849, 0.7569721115537849, 0.7768924302788844, 0.7609561752988048, 0.7370517928286853, 0.701195219123506, 0.6772908366533864, 0.6852589641434262, 0.6852589641434262, 0.6772908366533864, 0.6693227091633466, 0.6812749003984063, 0.701195219123506, 0.7211155378486056, 0.7529880478087649, 0.701195219123506, 0.6772908366533864, 0.6294820717131474, 0.5896414342629482, 0.6374501992031872, 0.5537848605577689, 0.8047808764940239, 0.852589641434263, 0.8804780876494024, 0.900398406374502, 0.9243027888446215, 0.9362549800796812, 0.9442231075697212, 0.9362549800796812, 0.9043824701195219, 0.8884462151394422, 0.8605577689243028, 0.8406374501992032, 0.7848605577689243, 0.3187250996015936, 0.2948207171314741, 0.2749003984063745, 0.2749003984063745, 0.2749003984063745, 0.2749003984063745, 0.26693227091633465, 0.27091633466135456, 0.27091633466135456, 0.27091633466135456, 0.26693227091633465, 0.26693227091633465, 0.26693227091633465, 0.26693227091633465, 0.2589641434262948, 0.2589641434262948, 0.7091633466135459, 0.3784860557768924, 0.26693227091633465, 0.2549800796812749, 0.2549800796812749, 0.250996015936255, 0.2350597609561753, 0.2350597609561753, 0.23107569721115537, 0.2350597609561753, 0.23904382470119523, 0.2350597609561753, 0.23107569721115537, 0.23107569721115537, 0.5537848605577689, 0.9203187250996016, 0.9402390438247012, 0.9442231075697212, 0.9402390438247012, 0.8446215139442231, 0.30278884462151395, 0.2151394422310757, 0.2151394422310757, 0.2151394422310757, 0.2151394422310757, 0.2151394422310757, 0.2151394422310757, 0.2151394422310757, 0.2151394422310757, 0.2151394422310757, 0.2151394422310757, 0.2151394422310757, 0.2151394422310757, 0.2151394422310757, 0.2151394422310757, 0.21912350597609562, 0.21912350597609562, 0.21912350597609562, 0.20717131474103587, 0.20717131474103587, 0.20717131474103587, 0.21115537848605578, 0.21115537848605578, 0.2151394422310757, 0.21115537848605578, 0.21115537848605578, 0.21115537848605578, 0.21115537848605578, 0.21115537848605578, 0.9282868525896414, 0.2151394422310757, 0.21912350597609562, 0.21912350597609562, 0.2151394422310757, 0.2151394422310757, 0.2151394422310757, 0.2151394422310757, 0.2151394422310757, 0.21115537848605578, 0.21115537848605578, 0.2151394422310757, 0.2151394422310757, 0.24701195219123506, 0.23904382470119523, 0.23904382470119523, 0.23904382470119523, 0.24302788844621515, 0.26693227091633465, 0.27091633466135456, 0.5936254980079682, 0.7529880478087649, 0.7808764940239044, 0.8326693227091634, 0.8884462151394422, 0.9123505976095617, 0.9362549800796812, 0.9442231075697212, 0.9362549800796812, 0.9282868525896414, 0.896414342629482, 0.8844621513944223, 0.8087649402390438, 0.7609561752988048, 0.7330677290836654, 0.6852589641434262, 0.6772908366533864, 0.6733067729083665, 0.6653386454183267, 0.5418326693227091, 0.4860557768924303, 0.398406374501992, 0.32270916334661354, 0.3147410358565737, 0.3107569721115538, 0.3107569721115538, 0.3107569721115538, 0.30278884462151395, 0.29880478087649404, 0.2948207171314741, 0.2948207171314741, 0.2948207171314741, 0.2948207171314741, 0.29880478087649404, 0.30278884462151395, 0.30278884462151395, 0.3187250996015936, 0.30677290836653387, 0.30677290836653387, 0.3107569721115538, 0.3147410358565737, 0.3107569721115538, 0.3187250996015936, 0.3346613545816733, 0.3426294820717131, 0.3426294820717131, 0.33067729083665337, 0.33067729083665337, 0.3386454183266932, 0.3386454183266932, 0.3346613545816733, 0.3466135458167331, 0.5219123505976095, 0.5179282868525896, 0.5976095617529881, 0.5896414342629482, 0.5856573705179283, 0.3386454183266932, 0.3386454183266932, 0.3386454183266932, 0.3386454183266932, 0.3426294820717131, 0.3426294820717131, 0.3466135458167331, 0.3545816733067729, 0.35856573705179284, 0.3745019920318725, 0.3745019920318725, 0.3745019920318725, 0.38645418326693226, 0.3904382470119522, 0.41832669322709165, 0.47808764940239046, 0.5179282868525896, 0.6055776892430279, 0.6454183266932271, 0.6972111553784861, 0.701195219123506, 0.7051792828685259], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Med25_VWA.gap.json b/pfam_gap_rates/Med25_VWA.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f403351a205410d6126c754f57067934e6a970ff
--- /dev/null
+++ b/pfam_gap_rates/Med25_VWA.gap.json
@@ -0,0 +1 @@
+{"family": "Med25_VWA", "n_seqs": 129, "length": 242, "gap_rates": [0.9457364341085271, 0.8449612403100775, 0.7364341085271318, 0.627906976744186, 0.3875968992248062, 0.2868217054263566, 0.23255813953488372, 0.21705426356589147, 0.21705426356589147, 0.1937984496124031, 0.1937984496124031, 0.1937984496124031, 0.1937984496124031, 0.18604651162790697, 0.1937984496124031, 0.18604651162790697, 0.18604651162790697, 0.18604651162790697, 0.1937984496124031, 0.17054263565891473, 0.16279069767441862, 0.17054263565891473, 0.16279069767441862, 0.16279069767441862, 0.16279069767441862, 0.17054263565891473, 0.17829457364341086, 0.16279069767441862, 0.16279069767441862, 0.16279069767441862, 0.16279069767441862, 0.16279069767441862, 0.16279069767441862, 0.16279069767441862, 0.16279069767441862, 0.16279069767441862, 0.17054263565891473, 0.17054263565891473, 0.17054263565891473, 0.4108527131782946, 0.43410852713178294, 0.3875968992248062, 0.9457364341085271, 0.3643410852713178, 0.37209302325581395, 0.3488372093023256, 0.3333333333333333, 0.5038759689922481, 0.43410852713178294, 0.8992248062015504, 0.26356589147286824, 0.24031007751937986, 0.16279069767441862, 0.13953488372093023, 0.13953488372093023, 0.13953488372093023, 0.13178294573643412, 0.13178294573643412, 0.13178294573643412, 0.13178294573643412, 0.13178294573643412, 0.13178294573643412, 0.13178294573643412, 0.13953488372093023, 0.13178294573643412, 0.13953488372093023, 0.14728682170542637, 0.13953488372093023, 0.13953488372093023, 0.14728682170542637, 0.13953488372093023, 0.12403100775193798, 0.11627906976744186, 0.10077519379844961, 0.10852713178294573, 0.09302325581395349, 0.10077519379844961, 0.10852713178294573, 0.10077519379844961, 0.09302325581395349, 0.09302325581395349, 0.09302325581395349, 0.09302325581395349, 0.09302325581395349, 0.07751937984496124, 0.07751937984496124, 0.07751937984496124, 0.06976744186046512, 0.06976744186046512, 0.06201550387596899, 0.06201550387596899, 0.06201550387596899, 0.06201550387596899, 0.046511627906976744, 0.046511627906976744, 0.05426356589147287, 0.046511627906976744, 0.05426356589147287, 0.05426356589147287, 0.046511627906976744, 0.046511627906976744, 0.05426356589147287, 0.05426356589147287, 0.05426356589147287, 0.49612403100775193, 0.06201550387596899, 0.05426356589147287, 0.05426356589147287, 0.05426356589147287, 0.05426356589147287, 0.046511627906976744, 0.046511627906976744, 0.05426356589147287, 0.05426356589147287, 0.05426356589147287, 0.07751937984496124, 0.08527131782945736, 0.09302325581395349, 0.08527131782945736, 0.11627906976744186, 0.12403100775193798, 0.13178294573643412, 0.13178294573643412, 0.21705426356589147, 0.2248062015503876, 0.8062015503875969, 0.937984496124031, 0.9457364341085271, 0.9224806201550387, 0.7131782945736435, 0.2868217054263566, 0.20930232558139536, 0.16279069767441862, 0.7286821705426356, 0.10852713178294573, 0.09302325581395349, 0.06976744186046512, 0.06976744186046512, 0.06976744186046512, 0.07751937984496124, 0.06976744186046512, 0.06976744186046512, 0.06976744186046512, 0.06976744186046512, 0.06976744186046512, 0.06976744186046512, 0.06976744186046512, 0.07751937984496124, 0.06976744186046512, 0.07751937984496124, 0.08527131782945736, 0.7984496124031008, 0.7751937984496124, 0.08527131782945736, 0.09302325581395349, 0.11627906976744186, 0.14728682170542637, 0.937984496124031, 0.12403100775193798, 0.14728682170542637, 0.17054263565891473, 0.18604651162790697, 0.17054263565891473, 0.15503875968992248, 0.6589147286821705, 0.6744186046511628, 0.689922480620155, 0.7054263565891473, 0.7131782945736435, 0.751937984496124, 0.7751937984496124, 0.8837209302325582, 0.7906976744186046, 0.7596899224806202, 0.7441860465116279, 0.7054263565891473, 0.689922480620155, 0.6821705426356589, 0.6666666666666666, 0.6589147286821705, 0.15503875968992248, 0.16279069767441862, 0.16279069767441862, 0.15503875968992248, 0.15503875968992248, 0.16279069767441862, 0.16279069767441862, 0.16279069767441862, 0.16279069767441862, 0.16279069767441862, 0.16279069767441862, 0.18604651162790697, 0.17829457364341086, 0.18604651162790697, 0.18604651162790697, 0.18604651162790697, 0.18604651162790697, 0.18604651162790697, 0.18604651162790697, 0.18604651162790697, 0.18604651162790697, 0.18604651162790697, 0.1937984496124031, 0.1937984496124031, 0.20155038759689922, 0.20155038759689922, 0.20155038759689922, 0.21705426356589147, 0.20155038759689922, 0.20930232558139536, 0.20930232558139536, 0.20930232558139536, 0.20930232558139536, 0.20930232558139536, 0.23255813953488372, 0.23255813953488372, 0.4573643410852713, 0.6124031007751938, 0.3178294573643411, 0.3798449612403101, 0.7054263565891473, 0.34108527131782945, 0.32558139534883723, 0.31007751937984496, 0.3178294573643411, 0.32558139534883723, 0.32558139534883723, 0.3488372093023256, 0.34108527131782945, 0.34108527131782945, 0.3488372093023256, 0.35658914728682173, 0.3643410852713178, 0.3643410852713178, 0.3643410852713178, 0.3643410852713178, 0.3643410852713178, 0.3643410852713178, 0.37209302325581395, 0.3798449612403101, 0.3875968992248062, 0.7209302325581395], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/MerR-DNA-bind.gap.json b/pfam_gap_rates/MerR-DNA-bind.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f8b14438ad99d30adeb1fe0cf7ab4aef586b199d
--- /dev/null
+++ b/pfam_gap_rates/MerR-DNA-bind.gap.json
@@ -0,0 +1 @@
+{"family": "MerR-DNA-bind", "n_seqs": 1243, "length": 69, "gap_rates": [0.34352373290426386, 0.12872083668543846, 0.06757843925985518, 0.030571198712791632, 0.0249396621078037, 0.02011263073209976, 0.019308125502815767, 0.017699115044247787, 0.016090104585679808, 0.013676588897827836, 0.013676588897827836, 0.012872083668543845, 0.012067578439259855, 0.011263073209975865, 0.008849557522123894, 0.008849557522123894, 0.008045052292839904, 0.008045052292839904, 0.008045052292839904, 0.006436041834271922, 0.004827031375703942, 0.004827031375703942, 0.004022526146419952, 0.004022526146419952, 0.8230088495575221, 0.035398230088495575, 0.032180209171359615, 0.07240547063555913, 0.07803700724054706, 0.06516492357200322, 0.8696701528559936, 0.04424778761061947, 0.019308125502815767, 0.004022526146419952, 0.0016090104585679806, 0.003218020917135961, 0.002413515687851971, 0.002413515687851971, 0.003218020917135961, 0.004022526146419952, 0.911504424778761, 0.9018503620273531, 0.011263073209975865, 0.003218020917135961, 0.002413515687851971, 0.002413515687851971, 0.002413515687851971, 0.003218020917135961, 0.004022526146419952, 0.004022526146419952, 0.004022526146419952, 0.004022526146419952, 0.004022526146419952, 0.004022526146419952, 0.004827031375703942, 0.004827031375703942, 0.004827031375703942, 0.0056315366049879325, 0.0056315366049879325, 0.0056315366049879325, 0.008045052292839904, 0.010458567980691875, 0.013676588897827836, 0.015285599356395816, 0.02172164119066774, 0.030571198712791632, 0.04344328238133548, 0.13596138374899436, 0.47948511665325827], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/MerR.gap.json b/pfam_gap_rates/MerR.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..5a38ba4c46ee5a0daa6fecd84ac9774c00331d96
--- /dev/null
+++ b/pfam_gap_rates/MerR.gap.json
@@ -0,0 +1 @@
+{"family": "MerR", "n_seqs": 1705, "length": 43, "gap_rates": [0.3096774193548387, 0.13958944281524927, 0.10029325513196481, 0.04926686217008798, 0.04281524926686217, 0.9442815249266863, 0.9442815249266863, 0.9442815249266863, 0.9442815249266863, 0.9395894428152493, 0.03636363636363636, 0.00997067448680352, 0.008211143695014663, 0.007038123167155425, 0.0064516129032258064, 0.005865102639296188, 0.002932551319648094, 0.002932551319648094, 0.0017595307917888563, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.45395894428152495, 0.004105571847507331, 0.0035190615835777126, 0.005278592375366569, 0.007038123167155425, 0.021114369501466276, 0.02932551319648094, 0.0187683284457478, 0.017595307917888565, 0.01994134897360704, 0.02463343108504399, 0.03401759530791789, 0.05513196480938416], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/MerR_1.gap.json b/pfam_gap_rates/MerR_1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..bba8203180c4c28aef1d56799c0e2c18e133c548
--- /dev/null
+++ b/pfam_gap_rates/MerR_1.gap.json
@@ -0,0 +1 @@
+{"family": "MerR_1", "n_seqs": 5000, "length": 72, "gap_rates": [0.427, 0.1586, 0.0788, 0.0562, 0.038, 0.03, 0.026, 0.0242, 0.022, 0.0188, 0.0154, 0.0106, 0.0092, 0.0076, 0.0072, 0.0066, 0.0046, 0.0044, 0.0038, 0.0032, 0.0032, 0.0032, 0.003, 0.0026, 0.0026, 0.8248, 0.0024, 0.0026, 0.0026, 0.0028, 0.0024, 0.8684, 0.5126, 0.0376, 0.006, 0.0036, 0.0024, 0.0288, 0.0034, 0.0032, 0.0028, 0.0028, 0.0038, 0.0048, 0.0058, 0.0066, 0.0076, 0.01, 0.0126, 0.0188, 0.0246, 0.0284, 0.0316, 0.0362, 0.0378, 0.0392, 0.0404, 0.834, 0.043, 0.0432, 0.0454, 0.0482, 0.05, 0.0532, 0.0582, 0.071, 0.09, 0.1044, 0.1428, 0.2086, 0.3814, 0.7778], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/MetW.gap.json b/pfam_gap_rates/MetW.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..93ef6e2db95d660486b240354f342af2970f1cf9
--- /dev/null
+++ b/pfam_gap_rates/MetW.gap.json
@@ -0,0 +1 @@
+{"family": "MetW", "n_seqs": 406, "length": 195, "gap_rates": [0.3103448275862069, 0.27832512315270935, 0.22660098522167488, 0.18472906403940886, 0.1330049261083744, 0.0960591133004926, 0.0812807881773399, 0.07635467980295567, 0.06403940886699508, 0.054187192118226604, 0.046798029556650245, 0.04187192118226601, 0.04187192118226601, 0.03694581280788178, 0.024630541871921183, 0.029556650246305417, 0.019704433497536946, 0.017241379310344827, 0.017241379310344827, 0.017241379310344827, 0.017241379310344827, 0.017241379310344827, 0.017241379310344827, 0.017241379310344827, 0.017241379310344827, 0.017241379310344827, 0.017241379310344827, 0.017241379310344827, 0.017241379310344827, 0.017241379310344827, 0.017241379310344827, 0.046798029556650245, 0.022167487684729065, 0.0812807881773399, 0.019704433497536946, 0.017241379310344827, 0.017241379310344827, 0.019704433497536946, 0.017241379310344827, 0.019704433497536946, 0.019704433497536946, 0.017241379310344827, 0.017241379310344827, 0.017241379310344827, 0.019704433497536946, 0.024630541871921183, 0.024630541871921183, 0.024630541871921183, 0.024630541871921183, 0.022167487684729065, 0.022167487684729065, 0.022167487684729065, 0.024630541871921183, 0.022167487684729065, 0.022167487684729065, 0.027093596059113302, 0.027093596059113302, 0.034482758620689655, 0.024630541871921183, 0.024630541871921183, 0.024630541871921183, 0.027093596059113302, 0.019704433497536946, 0.019704433497536946, 0.019704433497536946, 0.019704433497536946, 0.022167487684729065, 0.024630541871921183, 0.027093596059113302, 0.05172413793103448, 0.029556650246305417, 0.027093596059113302, 0.027093596059113302, 0.029556650246305417, 0.03694581280788178, 0.03201970443349754, 0.027093596059113302, 0.027093596059113302, 0.027093596059113302, 0.027093596059113302, 0.027093596059113302, 0.027093596059113302, 0.027093596059113302, 0.027093596059113302, 0.027093596059113302, 0.027093596059113302, 0.029556650246305417, 0.029556650246305417, 0.03201970443349754, 0.034482758620689655, 0.034482758620689655, 0.034482758620689655, 0.03694581280788178, 0.03694581280788178, 0.03694581280788178, 0.03694581280788178, 0.03694581280788178, 0.034482758620689655, 0.034482758620689655, 0.034482758620689655, 0.03694581280788178, 0.03694581280788178, 0.03940886699507389, 0.03694581280788178, 0.03694581280788178, 0.03940886699507389, 0.04187192118226601, 0.04433497536945813, 0.054187192118226604, 0.054187192118226604, 0.05665024630541872, 0.059113300492610835, 0.07389162561576355, 0.07389162561576355, 0.07635467980295567, 0.0812807881773399, 0.0812807881773399, 0.0812807881773399, 0.0812807881773399, 0.0812807881773399, 0.0812807881773399, 0.0812807881773399, 0.3645320197044335, 0.08866995073891626, 0.08620689655172414, 0.08620689655172414, 0.08620689655172414, 0.09359605911330049, 0.09852216748768473, 0.10591133004926108, 0.11822660098522167, 0.12315270935960591, 0.12807881773399016, 0.12315270935960591, 0.11576354679802955, 0.1206896551724138, 0.1206896551724138, 0.1206896551724138, 0.11822660098522167, 0.11576354679802955, 0.11576354679802955, 0.11576354679802955, 0.11576354679802955, 0.11576354679802955, 0.11576354679802955, 0.11576354679802955, 0.11576354679802955, 0.11576354679802955, 0.11576354679802955, 0.11576354679802955, 0.11576354679802955, 0.11576354679802955, 0.11576354679802955, 0.11576354679802955, 0.11576354679802955, 0.11576354679802955, 0.11576354679802955, 0.11576354679802955, 0.11576354679802955, 0.11576354679802955, 0.11576354679802955, 0.11576354679802955, 0.11822660098522167, 0.11822660098522167, 0.1206896551724138, 0.1206896551724138, 0.12315270935960591, 0.12561576354679804, 0.12315270935960591, 0.12315270935960591, 0.12561576354679804, 0.12807881773399016, 0.5049261083743842, 0.5049261083743842, 0.4753694581280788, 0.4064039408866995, 0.7857142857142857, 0.7463054187192119, 0.14285714285714285, 0.1330049261083744, 0.1330049261083744, 0.1330049261083744, 0.1330049261083744, 0.1330049261083744, 0.1330049261083744, 0.1354679802955665, 0.1354679802955665, 0.1354679802955665, 0.13793103448275862, 0.13793103448275862, 0.14039408866995073, 0.14285714285714285, 0.15517241379310345, 0.17733990147783252, 0.3694581280788177], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Met_synt_B12.gap.json b/pfam_gap_rates/Met_synt_B12.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..cfb23a43e9b4ab71d6416a76367dde84e59ef6d6
--- /dev/null
+++ b/pfam_gap_rates/Met_synt_B12.gap.json
@@ -0,0 +1 @@
+{"family": "Met_synt_B12", "n_seqs": 1199, "length": 291, "gap_rates": [0.8165137614678899, 0.3628023352793995, 0.3419516263552961, 0.32777314428690574, 0.3177648040033361, 0.31693077564637195, 0.31609674728940784, 0.3127606338615513, 0.3119266055045872, 0.3119266055045872, 0.3102585487906589, 0.3102585487906589, 0.30775646371976645, 0.30525437864887406, 0.3060884070058382, 0.9382819015846539, 0.3060884070058382, 0.30275229357798167, 0.29608006672226855, 0.2944120100083403, 0.29357798165137616, 0.29357798165137616, 0.292743953294412, 0.2919099249374479, 0.36363636363636365, 0.9190992493744787, 0.9224353628023353, 0.9232693911592994, 0.9216013344453712, 0.9157631359466222, 0.3311092577147623, 0.3177648040033361, 0.31693077564637195, 0.31442869057547956, 0.3094245204336947, 0.30775646371976645, 0.3085904920767306, 0.3761467889908257, 0.35446205170975814, 0.29524603836530444, 0.2885738115095913, 0.2718932443703086, 0.2702251876563803, 0.26688907422852376, 0.2618849040867389, 0.2618849040867389, 0.2627189324437031, 0.26438698915763137, 0.26855713094245204, 0.2652210175145955, 0.24770642201834864, 0.22518765638031693, 0.195162635529608, 0.18015012510425354, 0.17764804003336113, 0.1701417848206839, 0.1701417848206839, 0.17097581317764804, 0.16847372810675562, 0.16930775646371976, 0.16930775646371976, 0.1859883236030025, 0.176814011676397, 0.16180150125104253, 0.16180150125104253, 0.16263552960800667, 0.1634695579649708, 0.16263552960800667, 0.16263552960800667, 0.16263552960800667, 0.16263552960800667, 0.16263552960800667, 0.16263552960800667, 0.16263552960800667, 0.16263552960800667, 0.16430358632193495, 0.16680567139282734, 0.1651376146788991, 0.8899082568807339, 0.16430358632193495, 0.1634695579649708, 0.1634695579649708, 0.1634695579649708, 0.16430358632193495, 0.1701417848206839, 0.8690575479566305, 0.8915763135946623, 0.9224353628023353, 0.9374478732276897, 0.944954128440367, 0.9316096747289407, 0.9149291075896581, 0.8824020016680567, 0.5154295246038365, 0.24020016680567138, 0.28023352793994993, 0.27105921601334443, 0.9065888240200167, 0.27773144286905754, 0.24603836530442036, 0.23603002502085071, 0.19683069224353628, 0.16180150125104253, 0.16180150125104253, 0.16263552960800667, 0.1609674728940784, 0.16180150125104253, 0.16180150125104253, 0.1609674728940784, 0.1609674728940784, 0.1609674728940784, 0.16180150125104253, 0.33444537114261885, 0.34612176814011675, 0.21017514595496248, 0.4487072560467056, 0.8915763135946623, 0.9224353628023353, 0.5095913261050876, 0.4395329441201001, 0.22602168473728107, 0.2085070892410342, 0.17347789824854046, 0.15763135946622187, 0.15763135946622187, 0.15763135946622187, 0.1559633027522936, 0.15512927439532945, 0.1542952460383653, 0.15346121768140117, 0.15262718932443703, 0.1501251042535446, 0.18932443703085905, 0.237698081734779, 0.21684737281067556, 0.16430358632193495, 0.18098415346121768, 0.28607172643869894, 0.12010008340283569, 0.11092577147623019, 0.10842368640533778, 0.10341951626355296, 0.10008340283569642, 0.09591326105087573, 0.09591326105087573, 0.09591326105087573, 0.09674728940783987, 0.09591326105087573, 0.18098415346121768, 0.09674728940783987, 0.09591326105087573, 0.09591326105087573, 0.0950792326939116, 0.09591326105087573, 0.09674728940783987, 0.09591326105087573, 0.09924937447873228, 0.11926605504587157, 0.11843202668890743, 0.11509591326105087, 0.11426188490408674, 0.11509591326105087, 0.22351959966638865, 0.1134278565471226, 0.10258548790658882, 0.10008340283569642, 0.09674728940783987, 0.09257714762301918, 0.09257714762301918, 0.09174311926605505, 0.09090909090909091, 0.09090909090909091, 0.09257714762301918, 0.09007506255212677, 0.09007506255212677, 0.09007506255212677, 0.09090909090909091, 0.08924103419516263, 0.0884070058381985, 0.0884070058381985, 0.0884070058381985, 0.0884070058381985, 0.0884070058381985, 0.08673894912427023, 0.08423686405337781, 0.08423686405337781, 0.08673894912427023, 0.08673894912427023, 0.08924103419516263, 0.08757297748123437, 0.08673894912427023, 0.09591326105087573, 0.19766472060050042, 0.311092577147623, 0.17848206839032527, 0.17097581317764804, 0.1451209341117598, 0.15512927439532945, 0.15846538782318598, 0.1559633027522936, 0.1517931609674729, 0.14595496246872394, 0.13094245204336946, 0.12427022518765637, 0.13844870725604672, 0.14345287739783152, 0.14011676396997497, 0.1359466221851543, 0.12510425354462051, 0.11009174311926606, 0.10008340283569642, 0.09341117597998332, 0.08423686405337781, 0.0750625521267723, 0.057547956630525435, 0.05170975813177648, 0.04670558798999166, 0.045871559633027525, 0.045871559633027525, 0.045871559633027525, 0.045871559633027525, 0.045871559633027525, 0.0567139282735613, 0.061718098415346125, 0.04920767306088407, 0.05087572977481234, 0.06422018348623854, 0.058381984987489574, 0.05921601334445371, 0.043369474562135114, 0.03919933277731443, 0.04420350291909925, 0.03502919099249374, 0.03419516263552961, 0.03502919099249374, 0.03336113427856547, 0.03336113427856547, 0.03336113427856547, 0.03336113427856547, 0.03336113427856547, 0.03336113427856547, 0.03502919099249374, 0.44787322768974147, 0.03669724770642202, 0.03669724770642202, 0.03502919099249374, 0.03502919099249374, 0.03586321934945788, 0.03586321934945788, 0.03586321934945788, 0.03586321934945788, 0.03669724770642202, 0.03669724770642202, 0.03502919099249374, 0.03502919099249374, 0.03502919099249374, 0.03502919099249374, 0.03502919099249374, 0.03502919099249374, 0.03502919099249374, 0.03586321934945788, 0.03586321934945788, 0.03836530442035029, 0.040033361134278564, 0.08006672226855713, 0.09257714762301918, 0.11175979983319433, 0.12510425354462051, 0.1267723102585488, 0.13511259382819016, 0.14011676396997497, 0.14345287739783152, 0.14678899082568808, 0.1517931609674729, 0.2510425354462052, 0.3811509591326105, 0.3986655546288574, 0.41117597998331945, 0.42035029190992496, 0.42535446205170974, 0.427022518765638, 0.4303586321934946, 0.43202668890742285, 0.44036697247706424, 0.44370308590492075, 0.44370308590492075, 0.445371142618849, 0.44787322768974147, 0.45037531276063386, 0.4645537948290242, 0.5421184320266889], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Metallophos_2.gap.json b/pfam_gap_rates/Metallophos_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..5ed5ca2732d96f43b474930a9193f850ac8009b9
--- /dev/null
+++ b/pfam_gap_rates/Metallophos_2.gap.json
@@ -0,0 +1 @@
+{"family": "Metallophos_2", "n_seqs": 3764, "length": 343, "gap_rates": [0.5031880977683315, 0.28134962805526037, 0.13443145589798086, 0.07438894792773645, 0.05977683315621679, 0.05047821466524974, 0.04782146652497343, 0.0475557917109458, 0.04649309245483528, 0.04596174282678002, 0.6554197662061636, 0.8868225292242295, 0.910201912858661, 0.9280021253985122, 0.9306588735387885, 0.9473963868225292, 0.934643995749203, 0.9298618490967057, 0.9232199787460149, 0.8945270988310308, 0.7550478214665249, 0.6466524973432518, 0.14399574920297556, 0.1416046758767269, 0.056588735387885225, 0.04649309245483528, 0.039851222104144525, 0.036928799149840597, 0.03719447396386823, 0.036131774707757705, 0.03134962805526036, 0.03028692879914984, 0.02895855472901169, 0.03002125398512221, 0.05552603613177471, 0.04410201912858661, 0.036131774707757705, 0.032412327311370885, 0.38788522848034007, 0.30738575982996813, 0.020988310308182784, 0.01647183846971307, 0.01753453772582359, 0.017800212539851222, 0.015409139213602551, 0.01487778958554729, 0.014346439957492029, 0.0140807651434644, 0.8530818278427205, 0.8530818278427205, 0.8655685441020191, 0.8825717321997875, 0.9240170031880978, 0.9415515409139213, 0.8865568544102019, 0.8756641870350691, 0.8544102019128587, 0.8530818278427205, 0.8530818278427205, 0.08873538788522849, 0.6942082890541976, 0.9115302869287991, 0.5669500531349628, 0.4782146652497343, 0.4455366631243358, 0.11981934112646121, 0.1038788522848034, 0.0281615302869288, 0.8198724760892667, 0.834750265674814, 0.8751328374070139, 0.9226886291179596, 0.9383634431455898, 0.9011689691817216, 0.8482996811902231, 0.825451647183847, 0.8142933049946866, 0.07970244420828905, 0.8575982996811902, 0.03480340063761955, 0.02763018065887354, 0.020988310308182784, 0.017800212539851222, 0.024707757704569608, 0.03294367693942614, 0.03427205100956429, 0.12221041445270989, 0.12460148777895856, 0.7051009564293305, 0.8413921360255048, 0.9237513283740701, 0.8119022316684378, 0.468384697130712, 0.01567481402763018, 0.011955366631243358, 0.012221041445270989, 0.011424017003188097, 0.011689691817215728, 0.010626992561105207, 0.010361317747077577, 0.010626992561105207, 0.010626992561105207, 0.010626992561105207, 0.6344314558979809, 0.6405419766206164, 0.6564824654622742, 0.6809245483528161, 0.7053666312433581, 0.7215727948990436, 0.7404357066950054, 0.7723166843783209, 0.8034006376195537, 0.8243889479277364, 0.844048884165781, 0.879383634431456, 0.910201912858661, 0.9240170031880978, 0.9311902231668437, 0.9426142401700319, 0.9380977683315622, 0.9277364505844846, 0.9205632306057385, 0.8913390010626993, 0.864240170031881, 0.8342189160467588, 0.8134962805526036, 0.7882571732199788, 0.7635494155154091, 0.7290116896918172, 0.7130712008501594, 0.6920828905419766, 0.6657810839532412, 0.645855472901169, 0.6373538788522848, 0.6253985122210415, 0.582624867162593, 0.720510095642933, 0.6070669500531349, 0.9062167906482466, 0.7986184909670563, 0.5650903294367694, 0.5414452709883103, 0.5090329436769394, 0.48724760892667374, 0.4824654622741764, 0.4768862911795962, 0.4277364505844846, 0.41418703506907545, 0.3044633368756642, 0.28055260361317746, 0.23618490967056324, 0.09059511158342189, 0.08634431455897981, 0.07438894792773645, 0.07359192348565356, 0.04303931987247609, 0.8126992561105207, 0.8647715196599363, 0.8804463336875664, 0.8969181721572795, 0.9181721572794899, 0.9306588735387885, 0.9415515409139213, 0.946865037194474, 0.9375664187035069, 0.9234856535600425, 0.9096705632306057, 0.8900106269925611, 0.8722104144527099, 0.8304994686503719, 0.7994155154091392, 0.10015940488841658, 0.8950584484590861, 0.06907545164718384, 0.05526036131774708, 0.04436769394261424, 0.04303931987247609, 0.04543039319872476, 0.052072263549415514, 0.9465993623804463, 0.08262486716259299, 0.8730074388947928, 0.9213602550478215, 0.9476620616365569, 0.9357066950053134, 0.89798087141339, 0.8485653560042508, 0.05154091392136025, 0.06323060573857599, 0.056588735387885225, 0.022848034006376194, 0.9104675876726886, 0.9375664187035069, 0.927470775770457, 0.8897449521785334, 0.020191285866099893, 0.020191285866099893, 0.019925611052072262, 0.019659936238044632, 0.019925611052072262, 0.019925611052072262, 0.021519659936238045, 0.27098831030818277, 0.24920297555791712, 0.43623804463336874, 0.5839532412327312, 0.6153028692879915, 0.6615302869287991, 0.7372476089266737, 0.7895855472901169, 0.8140276301806588, 0.8336875664187035, 0.8506907545164718, 0.8602550478214666, 0.8655685441020191, 0.8722104144527099, 0.8780552603613178, 0.8852284803400637, 0.888682252922423, 0.8902763018065888, 0.8942614240170031, 0.8969181721572795, 0.9038257173219979, 0.9070138150903294, 0.9107332624867163, 0.9131243358129649, 0.9165781083953242, 0.9176408076514346, 0.9208289054197663, 0.9250797024442083, 0.9280021253985122, 0.9473963868225292, 0.9399574920297555, 0.9261424017003188, 0.922422954303932, 0.9189691817215728, 0.9165781083953242, 0.9141870350690755, 0.9125929861849097, 0.9070138150903294, 0.9062167906482466, 0.8977151965993624, 0.8955897980871413, 0.8910733262486716, 0.8897449521785334, 0.8870882040382572, 0.8841657810839533, 0.8761955366631243, 0.8676939426142402, 0.8634431455897981, 0.8560042507970245, 0.8379383634431455, 0.8243889479277364, 0.803931987247609, 0.7685972369819342, 0.6896918172157279, 0.6333687566418703, 0.5959086078639745, 0.48990435706695007, 0.41870350690754515, 0.11689691817215728, 0.14293304994686504, 0.11424017003188097, 0.08235919234856535, 0.06854410201912858, 0.05791710945802338, 0.05419766206163656, 0.052603613177470775, 0.053400637619553666, 0.06110520722635494, 0.07678002125398513, 0.07492029755579172, 0.905154091392136, 0.9407545164718385, 0.9476620616365569, 0.9306588735387885, 0.8671625929861849, 0.5738575982996812, 0.49229543039319873, 0.17056323060573858, 0.13230605738575982, 0.09670563230605739, 0.04729011689691817, 0.7725823591923485, 0.024707757704569608, 0.023379383634431455, 0.020722635494155154, 0.020988310308182784, 0.021519659936238045, 0.021785334750265676, 0.022051009564293306, 0.022582359192348564, 0.0475557917109458, 0.06296493092454836, 0.9327842720510096, 0.9458023379383634, 0.8844314558979809, 0.077577045696068, 0.10573857598299681, 0.11317747077577045, 0.11928799149840595, 0.11769394261424017, 0.9399574920297555, 0.895855472901169, 0.1381509032943677, 0.9083421891604676, 0.9420828905419766, 0.9487247608926673, 0.9450053134962806, 0.9386291179596175, 0.895855472901169, 0.13549415515409138, 0.1339001062699256, 0.13363443145589798, 0.13496280552603612, 0.1362911795961743, 0.13974495217853347, 0.15356004250797026, 0.15860786397449522, 0.18862911795961743, 0.21546227417640806, 0.2244952178533475, 0.2316684378320935, 0.2412327311370882, 0.31190223166843783, 0.3188097768331562, 0.3246546227417641, 0.3318278427205101, 0.34564293304994687, 0.39984059511158343, 0.8658342189160467, 0.9131243358129649, 0.890807651434644, 0.6955366631243358, 0.3379383634431456, 0.34564293304994687, 0.3517534537725824, 0.36291179596174283, 0.3751328374070138, 0.40621679064824656, 0.5114240170031881, 0.5791710945802337, 0.7260892667375133], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Metallophos_C.gap.json b/pfam_gap_rates/Metallophos_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..2343afe29cfcf2a54bb35212aa3d6d0ac444ae52
--- /dev/null
+++ b/pfam_gap_rates/Metallophos_C.gap.json
@@ -0,0 +1 @@
+{"family": "Metallophos_C", "n_seqs": 985, "length": 80, "gap_rates": [0.1736040609137056, 0.0751269035532995, 0.06091370558375635, 0.05279187817258883, 0.050761421319796954, 0.049746192893401014, 0.049746192893401014, 0.048730964467005075, 0.047715736040609136, 0.046700507614213196, 0.04263959390862944, 0.04365482233502538, 0.0416243654822335, 0.0416243654822335, 0.0416243654822335, 0.8507614213197969, 0.8923857868020305, 0.9025380710659898, 0.9390862944162437, 0.949238578680203, 0.9360406091370559, 0.8954314720812183, 0.8893401015228426, 0.6649746192893401, 0.2751269035532995, 0.2781725888324873, 0.35431472081218274, 0.27411167512690354, 0.1401015228426396, 0.8730964467005076, 0.9482233502538071, 0.934010152284264, 0.8131979695431472, 0.15126903553299492, 0.12588832487309645, 0.05583756345177665, 0.030456852791878174, 0.013197969543147208, 0.008121827411167513, 0.008121827411167513, 0.006091370558375634, 0.934010152284264, 0.006091370558375634, 0.0040609137055837565, 0.0040609137055837565, 0.8741116751269036, 0.0010152284263959391, 0.003045685279187817, 0.0040609137055837565, 0.003045685279187817, 0.003045685279187817, 0.003045685279187817, 0.003045685279187817, 0.0040609137055837565, 0.0040609137055837565, 0.0040609137055837565, 0.0040609137055837565, 0.20304568527918782, 0.007106598984771574, 0.007106598984771574, 0.007106598984771574, 0.009137055837563452, 0.012182741116751269, 0.013197969543147208, 0.013197969543147208, 0.013197969543147208, 0.018274111675126905, 0.02233502538071066, 0.026395939086294416, 0.03147208121827411, 0.07817258883248732, 0.9208121827411168, 0.08020304568527918, 0.1431472081218274, 0.8274111675126904, 0.2365482233502538, 0.34822335025380713, 0.4050761421319797, 0.41421319796954315, 0.6842639593908629], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Methyltrans_RNA.gap.json b/pfam_gap_rates/Methyltrans_RNA.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..468da6fab4d4218f55c498c0622ad73af451c7ff
--- /dev/null
+++ b/pfam_gap_rates/Methyltrans_RNA.gap.json
@@ -0,0 +1 @@
+{"family": "Methyltrans_RNA", "n_seqs": 2076, "length": 240, "gap_rates": [0.8545279383429673, 0.45857418111753373, 0.16955684007707128, 0.128131021194605, 0.09778420038535646, 0.07514450867052024, 0.06840077071290944, 0.06021194605009634, 0.057803468208092484, 0.05635838150289017, 0.05250481695568401, 0.12235067437379576, 0.05009633911368015, 0.049132947976878616, 0.04816955684007707, 0.04816955684007707, 0.044797687861271675, 0.04431599229287091, 0.04383429672447013, 0.04431599229287091, 0.04431599229287091, 0.04335260115606936, 0.04238921001926782, 0.04190751445086705, 0.04046242774566474, 0.03998073217726397, 0.04094412331406551, 0.10838150289017341, 0.04576107899807322, 0.04094412331406551, 0.0394990366088632, 0.0394990366088632, 0.03709055876685934, 0.03757225433526012, 0.03709055876685934, 0.03757225433526012, 0.03757225433526012, 0.04335260115606936, 0.041425818882466284, 0.03901734104046243, 0.0394990366088632, 0.0394990366088632, 0.041425818882466284, 0.04335260115606936, 0.04431599229287091, 0.13776493256262043, 0.09585741811175337, 0.07129094412331406, 0.06165703275529865, 0.052986512524084775, 0.09296724470134875, 0.06840077071290944, 0.04383429672447013, 0.041425818882466284, 0.04046242774566474, 0.038053949903660886, 0.038535645472061654, 0.05250481695568401, 0.042870905587668595, 0.04383429672447013, 0.04865125240847784, 0.2697495183044316, 0.028901734104046242, 0.02842003853564547, 0.02842003853564547, 0.027938342967244702, 0.02745664739884393, 0.02745664739884393, 0.02745664739884393, 0.02745664739884393, 0.02745664739884393, 0.03468208092485549, 0.9108863198458574, 0.02842003853564547, 0.02745664739884393, 0.02697495183044316, 0.02697495183044316, 0.02697495183044316, 0.026493256262042388, 0.026493256262042388, 0.026493256262042388, 0.026493256262042388, 0.02697495183044316, 0.02697495183044316, 0.026493256262042388, 0.02745664739884393, 0.02745664739884393, 0.02745664739884393, 0.02745664739884393, 0.02745664739884393, 0.02697495183044316, 0.02697495183044316, 0.02697495183044316, 0.02697495183044316, 0.02697495183044316, 0.02697495183044316, 0.02697495183044316, 0.026493256262042388, 0.026493256262042388, 0.3198458574181118, 0.2976878612716763, 0.29865125240847784, 0.2996146435452794, 0.3848747591522158, 0.2972061657032755, 0.10838150289017341, 0.06454720616570328, 0.03709055876685934, 0.031791907514450865, 0.030346820809248554, 0.030828516377649325, 0.03227360308285164, 0.0313102119460501, 0.029383429672447014, 0.029383429672447014, 0.029383429672447014, 0.029383429672447014, 0.029383429672447014, 0.029383429672447014, 0.029383429672447014, 0.029383429672447014, 0.028901734104046242, 0.029383429672447014, 0.029865125240847785, 0.029865125240847785, 0.029865125240847785, 0.030346820809248554, 0.030346820809248554, 0.030346820809248554, 0.030346820809248554, 0.030346820809248554, 0.030346820809248554, 0.030346820809248554, 0.030346820809248554, 0.03468208092485549, 0.03420038535645472, 0.038053949903660886, 0.03275529865125241, 0.0313102119460501, 0.029865125240847785, 0.031791907514450865, 0.03420038535645472, 0.03420038535645472, 0.03371868978805395, 0.041425818882466284, 0.0476878612716763, 0.038053949903660886, 0.03564547206165703, 0.03709055876685934, 0.06358381502890173, 0.1724470134874759, 0.13921001926782273, 0.8521194605009634, 0.8959537572254336, 0.8752408477842004, 0.8121387283236994, 0.2769749518304432, 0.046242774566473986, 0.038535645472061654, 0.03757225433526012, 0.036127167630057806, 0.036127167630057806, 0.036127167630057806, 0.16859344894026976, 0.13391136801541426, 0.09971098265895954, 0.08863198458574181, 0.19990366088631983, 0.12572254335260116, 0.08285163776493257, 0.07418111753371869, 0.05876685934489403, 0.04865125240847784, 0.06213872832369942, 0.051541425818882464, 0.11416184971098266, 0.21098265895953758, 0.39065510597302505, 0.43786127167630057, 0.46965317919075145, 0.5346820809248555, 0.7577071290944123, 0.8179190751445087, 0.9171483622350675, 0.9450867052023122, 0.9320809248554913, 0.9017341040462428, 0.7952793834296724, 0.6628131021194605, 0.03275529865125241, 0.030346820809248554, 0.02842003853564547, 0.02842003853564547, 0.027938342967244702, 0.027938342967244702, 0.027938342967244702, 0.027938342967244702, 0.027938342967244702, 0.027938342967244702, 0.02745664739884393, 0.027938342967244702, 0.02745664739884393, 0.027938342967244702, 0.028901734104046242, 0.028901734104046242, 0.028901734104046242, 0.02842003853564547, 0.030346820809248554, 0.030346820809248554, 0.031791907514450865, 0.03227360308285164, 0.8771676300578035, 0.05635838150289017, 0.042870905587668595, 0.03901734104046243, 0.03516377649325626, 0.030828516377649325, 0.0313102119460501, 0.03275529865125241, 0.03516377649325626, 0.03468208092485549, 0.03227360308285164, 0.033236994219653176, 0.03227360308285164, 0.03227360308285164, 0.03227360308285164, 0.03227360308285164, 0.03275529865125241, 0.033236994219653176, 0.03371868978805395, 0.03371868978805395, 0.03420038535645472, 0.03516377649325626, 0.0394990366088632, 0.04431599229287091, 0.06213872832369942, 0.08333333333333333, 0.12379576107899808, 0.3516377649325626, 0.7538535645472062], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/MethyltransfD12.gap.json b/pfam_gap_rates/MethyltransfD12.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a85734713467f4e3eb2fbfe708bef6f37359646e
--- /dev/null
+++ b/pfam_gap_rates/MethyltransfD12.gap.json
@@ -0,0 +1 @@
+{"family": "MethyltransfD12", "n_seqs": 1319, "length": 322, "gap_rates": [0.14859742228961334, 0.12509476876421532, 0.11448066717210008, 0.10993176648976498, 0.10993176648976498, 0.10917361637604246, 0.10765731614859743, 0.10538286580742987, 0.10386656557998483, 0.10310841546626232, 0.1023502653525398, 0.1023502653525398, 0.10159211523881728, 0.10007581501137225, 0.0978013646702047, 0.09552691432903715, 0.09401061410159212, 0.2714177407126611, 0.5830174374526156, 0.7445034116755117, 0.88855193328279, 0.8551933282789992, 0.6982562547384382, 0.12054586808188021, 0.08491281273692192, 0.07884761182714177, 0.07733131159969674, 0.0758150113722517, 0.07505686125852919, 0.07505686125852919, 0.07505686125852919, 0.07505686125852919, 0.07202426080363912, 0.07202426080363912, 0.07202426080363912, 0.07278241091736164, 0.07202426080363912, 0.07278241091736164, 0.07278241091736164, 0.07808946171341925, 0.07505686125852919, 0.07884761182714177, 0.4488248673237301, 0.4518574677786202, 0.77710386656558, 0.9476876421531463, 0.756633813495072, 0.08567096285064443, 0.07960576194086429, 0.07960576194086429, 0.07960576194086429, 0.07884761182714177, 0.07733131159969674, 0.07808946171341925, 0.07505686125852919, 0.07505686125852919, 0.07505686125852919, 0.0758150113722517, 0.07657316148597422, 0.07733131159969674, 0.07733131159969674, 0.07808946171341925, 0.07808946171341925, 0.07808946171341925, 0.07808946171341925, 0.0803639120545868, 0.5716451857467779, 0.08946171341925702, 0.0841546626231994, 0.08567096285064443, 0.1516300227445034, 0.8347232752084913, 0.8809704321455648, 0.913570887035633, 0.9378316906747536, 0.9294920394238059, 0.8976497346474602, 0.8574677786201668, 0.8142532221379833, 0.24791508718726307, 0.13570887035633056, 0.12130401819560273, 0.11675511751326763, 0.11372251705837756, 0.10993176648976498, 0.10917361637604246, 0.11220621683093253, 0.11599696739954511, 0.12130401819560273, 0.2789992418498863, 0.379833206974981, 0.8642911296436695, 0.9249431387414708, 0.8923426838514026, 0.824109173616376, 0.21910538286580744, 0.22441243366186506, 0.24715693707354056, 0.5610310841546626, 0.514783927217589, 0.5216072782410918, 0.6467020470053071, 0.25701288855193327, 0.1607278241091736, 0.12736921910538287, 0.12661106899166036, 0.12509476876421532, 0.1243366186504928, 0.1243366186504928, 0.12206216830932524, 0.12357846853677028, 0.12206216830932524, 0.7657316148597423, 0.7899924184988628, 0.8089461713419257, 0.846095526914329, 0.8597422289613343, 0.8824867323730099, 0.9120545868081881, 0.9203942380591357, 0.9499620924943138, 0.9385898407884761, 0.9166034874905231, 0.9006823351023503, 0.8733889310083397, 0.8536770280515542, 0.8271417740712661, 0.7975739196360879, 0.775587566338135, 0.7308567096285065, 0.1728582259287339, 0.18423047763457165, 0.17816527672479152, 0.18119787717968158, 0.7414708112206216, 0.6815769522365428, 0.6322971948445792, 0.5390447308567097, 0.3411675511751327, 0.24184988627748294, 0.21152388172858225, 0.177407126611069, 0.17816527672479152, 0.17361637604245642, 0.17816527672479152, 0.15238817285822592, 0.7793783169067475, 0.8278999241849886, 0.8612585291887794, 0.9408642911296436, 0.8506444275966641, 0.8089461713419257, 0.7232752084912812, 0.19332827899924185, 0.1561789234268385, 0.14556482183472327, 0.13040181956027294, 0.13570887035633056, 0.13419257012888552, 0.13191811978771797, 0.133434420015163, 0.13570887035633056, 0.13646702047005307, 0.1326762699014405, 0.13040181956027294, 0.13570887035633056, 0.1372251705837756, 0.13949962092494314, 0.13949962092494314, 0.14101592115238817, 0.14783927217589082, 0.14859742228961334, 0.14480667172100076, 0.1425322213798332, 0.14101592115238817, 0.19332827899924185, 0.15314632297194844, 0.14329037149355572, 0.13949962092494314, 0.1425322213798332, 0.14329037149355572, 0.12736921910538287, 0.1288855193328279, 0.12661106899166036, 0.12736921910538287, 0.1288855193328279, 0.13495072024260804, 0.8612585291887794, 0.9272175890826384, 0.9037149355572404, 0.7210007581501138, 0.41925701288855194, 0.22062168309325247, 0.17589082638362397, 0.1645185746777862, 0.1379833206974981, 0.12054586808188021, 0.11827141774071266, 0.11296436694465505, 0.11144806671721001, 0.11220621683093253, 0.11220621683093253, 0.11144806671721001, 0.11144806671721001, 0.11144806671721001, 0.11220621683093253, 0.11220621683093253, 0.10917361637604246, 0.7043214556482184, 0.9264594389689158, 0.9052312357846853, 0.6611068991660348, 0.1068991660348749, 0.10765731614859743, 0.10765731614859743, 0.10765731614859743, 0.1068991660348749, 0.1068991660348749, 0.1068991660348749, 0.1068991660348749, 0.10765731614859743, 0.10765731614859743, 0.10765731614859743, 0.10765731614859743, 0.10841546626231995, 0.10993176648976498, 0.1152388172858226, 0.8999241849886277, 0.38362395754359363, 0.14556482183472327, 0.12206216830932524, 0.10538286580742987, 0.22971948445792267, 0.10159211523881728, 0.10159211523881728, 0.10159211523881728, 0.1023502653525398, 0.10386656557998483, 0.10386656557998483, 0.10462471569370735, 0.10614101592115238, 0.1068991660348749, 0.11220621683093253, 0.5125094768764216, 0.4382107657316149, 0.379833206974981, 0.37149355572403336, 0.3237300985595148, 0.19484457922668688, 0.14783927217589082, 0.133434420015163, 0.13115996967399546, 0.13419257012888552, 0.13949962092494314, 0.1379833206974981, 0.18119787717968158, 0.15314632297194844, 0.15238817285822592, 0.15314632297194844, 0.1508718726307809, 0.15314632297194844, 0.155420773313116, 0.15769522365428354, 0.22365428354814254, 0.2001516300227445, 0.18726307808946172, 0.1865049279757392, 0.17589082638362397, 0.1683093252463988, 0.16906747536012132, 0.17437452615617893, 0.17816527672479152, 0.18347232752084913, 0.444275966641395, 0.9234268385140257, 0.9378316906747536, 0.8968915845337376, 0.5602729340409401, 0.44806671721000757, 0.43290371493555724, 0.39651250947687644, 0.21228203184230476, 0.2092494313874147, 0.20849128127369218, 0.21304018195602728, 0.21455648218347234, 0.21304018195602728, 0.21531463229719486, 0.21607278241091737, 0.7210007581501138, 0.7642153146322972, 0.775587566338135, 0.8870356330553449, 0.7687642153146323, 0.7558756633813495, 0.7240333586050038, 0.24639878695981804, 0.24336618650492797, 0.244882486732373, 0.35178165276724793, 0.24564063684609552, 0.24639878695981804, 0.25094768764215314, 0.25246398786959817, 0.25246398786959817, 0.2630780894617134, 0.2721758908263836, 0.7172100075815011, 0.7035633055344959, 0.7126611068991661, 0.4268385140257771, 0.46626231993934797, 0.48142532221379836, 0.5072024260803639, 0.5299469294920395, 0.5564821834723275, 0.574677786201668, 0.5943896891584534, 0.6194086429112965, 0.6702047005307051, 0.7323730098559514, 0.8256254738438211], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Methyltransf_15.gap.json b/pfam_gap_rates/Methyltransf_15.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..1636aa05802621e0d57a9053807924fc8b91d89f
--- /dev/null
+++ b/pfam_gap_rates/Methyltransf_15.gap.json
@@ -0,0 +1 @@
+{"family": "Methyltransf_15", "n_seqs": 486, "length": 200, "gap_rates": [0.5843621399176955, 0.18518518518518517, 0.10082304526748971, 0.08641975308641975, 0.08641975308641975, 0.08436213991769548, 0.08436213991769548, 0.0823045267489712, 0.0823045267489712, 0.07613168724279835, 0.07613168724279835, 0.07613168724279835, 0.07613168724279835, 0.07613168724279835, 0.07613168724279835, 0.07613168724279835, 0.0823045267489712, 0.0823045267489712, 0.0823045267489712, 0.08436213991769548, 0.8251028806584362, 0.8148148148148148, 0.07407407407407407, 0.11728395061728394, 0.08847736625514403, 0.0720164609053498, 0.06790123456790123, 0.06378600823045268, 0.06378600823045268, 0.06378600823045268, 0.06172839506172839, 0.05761316872427984, 0.05555555555555555, 0.05555555555555555, 0.053497942386831275, 0.053497942386831275, 0.053497942386831275, 0.051440329218107, 0.053497942386831275, 0.053497942386831275, 0.053497942386831275, 0.04938271604938271, 0.04938271604938271, 0.053497942386831275, 0.05761316872427984, 0.06172839506172839, 0.102880658436214, 0.10493827160493827, 0.9382716049382716, 0.06790123456790123, 0.0823045267489712, 0.06584362139917696, 0.06995884773662552, 0.06378600823045268, 0.06172839506172839, 0.059670781893004114, 0.059670781893004114, 0.059670781893004114, 0.06378600823045268, 0.06378600823045268, 0.06995884773662552, 0.07407407407407407, 0.757201646090535, 0.7654320987654321, 0.7860082304526749, 0.8127572016460906, 0.8251028806584362, 0.8827160493827161, 0.897119341563786, 0.911522633744856, 0.9259259259259259, 0.9382716049382716, 0.9403292181069959, 0.9444444444444444, 0.9423868312757202, 0.9403292181069959, 0.9320987654320988, 0.9176954732510288, 0.9053497942386831, 0.8930041152263375, 0.8353909465020576, 0.8168724279835391, 0.7962962962962963, 0.7757201646090535, 0.7633744855967078, 0.7551440329218106, 0.09053497942386832, 0.1440329218106996, 0.1440329218106996, 0.13991769547325103, 0.16872427983539096, 0.14814814814814814, 0.4506172839506173, 0.44238683127572015, 0.4382716049382716, 0.48148148148148145, 0.8847736625514403, 0.9300411522633745, 0.7818930041152263, 0.30246913580246915, 0.18724279835390947, 0.16872427983539096, 0.1440329218106996, 0.1337448559670782, 0.13580246913580246, 0.13786008230452676, 0.1440329218106996, 0.16049382716049382, 0.16049382716049382, 0.16666666666666666, 0.19135802469135801, 0.17695473251028807, 0.1748971193415638, 0.1831275720164609, 0.18724279835390947, 0.1831275720164609, 0.205761316872428, 0.20987654320987653, 0.19135802469135801, 0.205761316872428, 0.19753086419753085, 0.19547325102880658, 0.6646090534979424, 0.25102880658436216, 0.9259259259259259, 0.21193415637860083, 0.20987654320987653, 0.2139917695473251, 0.21193415637860083, 0.2777777777777778, 0.22839506172839505, 0.22633744855967078, 0.21810699588477367, 0.21604938271604937, 0.2139917695473251, 0.21193415637860083, 0.20781893004115226, 0.20987654320987653, 0.9362139917695473, 0.9465020576131687, 0.9300411522633745, 0.20987654320987653, 0.21193415637860083, 0.21193415637860083, 0.21193415637860083, 0.22839506172839505, 0.23868312757201646, 0.2654320987654321, 0.2613168724279835, 0.20987654320987653, 0.20987654320987653, 0.20987654320987653, 0.20987654320987653, 0.20987654320987653, 0.21193415637860083, 0.2139917695473251, 0.21604938271604937, 0.21604938271604937, 0.22016460905349794, 0.22633744855967078, 0.23251028806584362, 0.2345679012345679, 0.9423868312757202, 0.9444444444444444, 0.9444444444444444, 0.9423868312757202, 0.25308641975308643, 0.2880658436213992, 0.294238683127572, 0.6172839506172839, 0.6872427983539094, 0.6563786008230452, 0.6378600823045267, 0.39711934156378603, 0.37037037037037035, 0.3683127572016461, 0.37448559670781895, 0.3888888888888889, 0.4279835390946502, 0.3888888888888889, 0.38271604938271603, 0.38477366255144035, 0.39300411522633744, 0.39711934156378603, 0.4053497942386831, 0.411522633744856, 0.4156378600823045, 0.411522633744856, 0.411522633744856, 0.411522633744856, 0.4156378600823045, 0.411522633744856, 0.411522633744856, 0.411522633744856, 0.4176954732510288, 0.41975308641975306, 0.41975308641975306, 0.4279835390946502, 0.4403292181069959, 0.6255144032921811], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Methyltransf_30.gap.json b/pfam_gap_rates/Methyltransf_30.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..eba997267591cf9ec299413f1a8e5032b2d979fa
--- /dev/null
+++ b/pfam_gap_rates/Methyltransf_30.gap.json
@@ -0,0 +1 @@
+{"family": "Methyltransf_30", "n_seqs": 527, "length": 127, "gap_rates": [0.8975332068311196, 0.7533206831119544, 0.6679316888045541, 0.6280834914611005, 0.5977229601518027, 0.5597722960151803, 0.5351043643263758, 0.5256166982922201, 0.5123339658444023, 0.5009487666034156, 0.4857685009487666, 0.4819734345351044, 0.47248576850094876, 0.4667931688804554, 0.4629981024667932, 0.4857685009487666, 0.47058823529411764, 0.47058823529411764, 0.444022770398482, 0.4364326375711575, 0.4364326375711575, 0.4079696394686907, 0.38140417457305503, 0.3738140417457306, 0.3548387096774194, 0.33396584440227706, 0.3908918406072106, 0.476280834914611, 0.2922201138519924, 0.2314990512333966, 0.2144212523719165, 0.2049335863377609, 0.20113851992409867, 0.19734345351043645, 0.19165085388994307, 0.18785578747628084, 0.18216318785578747, 0.18026565464895636, 0.17267552182163187, 0.1650853889943074, 0.16698292220113853, 0.16129032258064516, 0.15180265654648956, 0.14041745730550284, 0.12144212523719165, 0.0967741935483871, 0.11195445920303605, 0.06261859582542695, 0.6375711574952562, 0.8311195445920304, 0.7172675521821632, 0.5502846299810247, 0.018975332068311195, 0.011385199240986717, 0.007590132827324478, 0.007590132827324478, 0.0056925996204933585, 0.0056925996204933585, 0.0056925996204933585, 0.0056925996204933585, 0.0056925996204933585, 0.007590132827324478, 0.009487666034155597, 0.007590132827324478, 0.009487666034155597, 0.011385199240986717, 0.011385199240986717, 0.009487666034155597, 0.009487666034155597, 0.007590132827324478, 0.007590132827324478, 0.0056925996204933585, 0.003795066413662239, 0.003795066413662239, 0.003795066413662239, 0.003795066413662239, 0.003795066413662239, 0.003795066413662239, 0.003795066413662239, 0.0018975332068311196, 0.0018975332068311196, 0.0018975332068311196, 0.0018975332068311196, 0.0018975332068311196, 0.0018975332068311196, 0.0018975332068311196, 0.0018975332068311196, 0.0018975332068311196, 0.0018975332068311196, 0.0018975332068311196, 0.0018975332068311196, 0.0056925996204933585, 0.009487666034155597, 0.009487666034155597, 0.009487666034155597, 0.020872865275142316, 0.022770398481973434, 0.022770398481973434, 0.022770398481973434, 0.024667931688804556, 0.024667931688804556, 0.024667931688804556, 0.026565464895635674, 0.026565464895635674, 0.026565464895635674, 0.026565464895635674, 0.026565464895635674, 0.026565464895635674, 0.03415559772296015, 0.04743833017077799, 0.051233396584440226, 0.06072106261859583, 0.08349146110056926, 0.0872865275142315, 0.09487666034155598, 0.10436432637571158, 0.11385199240986717, 0.11385199240986717, 0.11385199240986717, 0.1157495256166983, 0.11954459203036052, 0.1252371916508539, 0.1252371916508539, 0.12903225806451613, 0.1347248576850095, 0.17647058823529413, 0.5445920303605313], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Methyltransf_34.gap.json b/pfam_gap_rates/Methyltransf_34.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..877de46a356964b43293a5ebd329114f8a0b6214
--- /dev/null
+++ b/pfam_gap_rates/Methyltransf_34.gap.json
@@ -0,0 +1 @@
+{"family": "Methyltransf_34", "n_seqs": 108, "length": 447, "gap_rates": [0.5092592592592593, 0.4537037037037037, 0.37962962962962965, 0.37037037037037035, 0.37037037037037035, 0.37037037037037035, 0.3333333333333333, 0.3055555555555556, 0.28703703703703703, 0.25925925925925924, 0.23148148148148148, 0.2222222222222222, 0.2222222222222222, 0.9074074074074074, 0.9444444444444444, 0.9259259259259259, 0.8888888888888888, 0.1574074074074074, 0.1388888888888889, 0.12962962962962962, 0.12962962962962962, 0.12962962962962962, 0.12962962962962962, 0.12962962962962962, 0.12962962962962962, 0.12962962962962962, 0.12962962962962962, 0.12962962962962962, 0.12962962962962962, 0.12962962962962962, 0.12962962962962962, 0.12037037037037036, 0.12037037037037036, 0.12037037037037036, 0.12037037037037036, 0.12037037037037036, 0.12037037037037036, 0.12037037037037036, 0.12037037037037036, 0.12037037037037036, 0.6851851851851852, 0.6759259259259259, 0.12037037037037036, 0.12962962962962962, 0.14814814814814814, 0.26851851851851855, 0.25, 0.1111111111111111, 0.1111111111111111, 0.1111111111111111, 0.1111111111111111, 0.1111111111111111, 0.1111111111111111, 0.1111111111111111, 0.1111111111111111, 0.1111111111111111, 0.1111111111111111, 0.1111111111111111, 0.1111111111111111, 0.1111111111111111, 0.1111111111111111, 0.1111111111111111, 0.1111111111111111, 0.1111111111111111, 0.1111111111111111, 0.1111111111111111, 0.1111111111111111, 0.1111111111111111, 0.5648148148148148, 0.5370370370370371, 0.14814814814814814, 0.1388888888888889, 0.12962962962962962, 0.12962962962962962, 0.37037037037037035, 0.37962962962962965, 0.3425925925925926, 0.17592592592592593, 0.7592592592592593, 0.7870370370370371, 0.8518518518518519, 0.8796296296296297, 0.9074074074074074, 0.9074074074074074, 0.9074074074074074, 0.9259259259259259, 0.9351851851851852, 0.9351851851851852, 0.9351851851851852, 0.9259259259259259, 0.9074074074074074, 0.9074074074074074, 0.9074074074074074, 0.8796296296296297, 0.8796296296296297, 0.8148148148148148, 0.7685185185185185, 0.75, 0.25925925925925924, 0.5, 0.4537037037037037, 0.4166666666666667, 0.4351851851851852, 0.4351851851851852, 0.46296296296296297, 0.6388888888888888, 0.6388888888888888, 0.6018518518518519, 0.5462962962962963, 0.49074074074074076, 0.3333333333333333, 0.7222222222222222, 0.7314814814814815, 0.75, 0.7685185185185185, 0.8240740740740741, 0.8333333333333334, 0.8611111111111112, 0.8888888888888888, 0.9074074074074074, 0.9166666666666666, 0.9259259259259259, 0.9444444444444444, 0.9444444444444444, 0.9259259259259259, 0.9166666666666666, 0.8981481481481481, 0.8611111111111112, 0.8518518518518519, 0.8333333333333334, 0.8240740740740741, 0.7592592592592593, 0.7314814814814815, 0.7222222222222222, 0.7222222222222222, 0.19444444444444445, 0.1388888888888889, 0.08333333333333333, 0.06481481481481481, 0.06481481481481481, 0.06481481481481481, 0.06481481481481481, 0.06481481481481481, 0.06481481481481481, 0.06481481481481481, 0.06481481481481481, 0.06481481481481481, 0.4444444444444444, 0.06481481481481481, 0.06481481481481481, 0.06481481481481481, 0.06481481481481481, 0.06481481481481481, 0.06481481481481481, 0.05555555555555555, 0.05555555555555555, 0.05555555555555555, 0.05555555555555555, 0.05555555555555555, 0.7592592592592593, 0.7592592592592593, 0.7685185185185185, 0.8055555555555556, 0.8425925925925926, 0.8611111111111112, 0.8611111111111112, 0.8888888888888888, 0.9166666666666666, 0.9351851851851852, 0.9351851851851852, 0.9351851851851852, 0.9259259259259259, 0.8981481481481481, 0.8796296296296297, 0.8611111111111112, 0.8518518518518519, 0.8240740740740741, 0.7777777777777778, 0.7592592592592593, 0.7592592592592593, 0.7592592592592593, 0.48148148148148145, 0.6203703703703703, 0.7129629629629629, 0.7407407407407407, 0.8055555555555556, 0.8796296296296297, 0.8981481481481481, 0.9444444444444444, 0.8796296296296297, 0.8518518518518519, 0.75, 0.7314814814814815, 0.6574074074074074, 0.6018518518518519, 0.4537037037037037, 0.42592592592592593, 0.4166666666666667, 0.3333333333333333, 0.24074074074074073, 0.12962962962962962, 0.046296296296296294, 0.046296296296296294, 0.046296296296296294, 0.046296296296296294, 0.046296296296296294, 0.046296296296296294, 0.046296296296296294, 0.046296296296296294, 0.046296296296296294, 0.046296296296296294, 0.046296296296296294, 0.046296296296296294, 0.046296296296296294, 0.046296296296296294, 0.046296296296296294, 0.046296296296296294, 0.046296296296296294, 0.046296296296296294, 0.046296296296296294, 0.046296296296296294, 0.046296296296296294, 0.046296296296296294, 0.046296296296296294, 0.046296296296296294, 0.046296296296296294, 0.046296296296296294, 0.046296296296296294, 0.05555555555555555, 0.05555555555555555, 0.05555555555555555, 0.14814814814814814, 0.1574074074074074, 0.17592592592592593, 0.3333333333333333, 0.3055555555555556, 0.3425925925925926, 0.28703703703703703, 0.28703703703703703, 0.37037037037037035, 0.37037037037037035, 0.39814814814814814, 0.5185185185185185, 0.4351851851851852, 0.37037037037037035, 0.3611111111111111, 0.3611111111111111, 0.35185185185185186, 0.3333333333333333, 0.3055555555555556, 0.24074074074074073, 0.17592592592592593, 0.8981481481481481, 0.9351851851851852, 0.9166666666666666, 0.8425925925925926, 0.12962962962962962, 0.12962962962962962, 0.12037037037037036, 0.12037037037037036, 0.12037037037037036, 0.1111111111111111, 0.1111111111111111, 0.1111111111111111, 0.1111111111111111, 0.1111111111111111, 0.1111111111111111, 0.1111111111111111, 0.1111111111111111, 0.1111111111111111, 0.1111111111111111, 0.1388888888888889, 0.19444444444444445, 0.19444444444444445, 0.1574074074074074, 0.14814814814814814, 0.1574074074074074, 0.18518518518518517, 0.3055555555555556, 0.26851851851851855, 0.8518518518518519, 0.8981481481481481, 0.9166666666666666, 0.9351851851851852, 0.9444444444444444, 0.9444444444444444, 0.9444444444444444, 0.9444444444444444, 0.9444444444444444, 0.9166666666666666, 0.8981481481481481, 0.8611111111111112, 0.8240740740740741, 0.48148148148148145, 0.17592592592592593, 0.16666666666666666, 0.14814814814814814, 0.12962962962962962, 0.12962962962962962, 0.12962962962962962, 0.12962962962962962, 0.12962962962962962, 0.12962962962962962, 0.12962962962962962, 0.12962962962962962, 0.12962962962962962, 0.12962962962962962, 0.12962962962962962, 0.12037037037037036, 0.12037037037037036, 0.12037037037037036, 0.12037037037037036, 0.12037037037037036, 0.75, 0.1574074074074074, 0.12037037037037036, 0.12037037037037036, 0.12037037037037036, 0.12037037037037036, 0.12037037037037036, 0.12037037037037036, 0.1111111111111111, 0.1111111111111111, 0.1111111111111111, 0.1111111111111111, 0.1111111111111111, 0.12962962962962962, 0.12037037037037036, 0.1111111111111111, 0.1111111111111111, 0.1111111111111111, 0.1111111111111111, 0.1111111111111111, 0.1111111111111111, 0.1111111111111111, 0.1111111111111111, 0.12037037037037036, 0.12037037037037036, 0.12037037037037036, 0.12037037037037036, 0.12962962962962962, 0.1388888888888889, 0.1574074074074074, 0.14814814814814814, 0.1388888888888889, 0.12962962962962962, 0.12962962962962962, 0.12037037037037036, 0.12037037037037036, 0.9351851851851852, 0.9259259259259259, 0.12037037037037036, 0.12037037037037036, 0.8240740740740741, 0.8333333333333334, 0.8888888888888888, 0.8981481481481481, 0.9166666666666666, 0.9166666666666666, 0.9259259259259259, 0.9351851851851852, 0.9444444444444444, 0.9444444444444444, 0.9259259259259259, 0.9259259259259259, 0.9166666666666666, 0.8981481481481481, 0.8981481481481481, 0.8611111111111112, 0.8333333333333334, 0.8240740740740741, 0.3425925925925926, 0.35185185185185186, 0.12962962962962962, 0.12962962962962962, 0.12962962962962962, 0.12962962962962962, 0.12962962962962962, 0.12962962962962962, 0.12962962962962962, 0.12962962962962962, 0.12962962962962962, 0.12962962962962962, 0.12962962962962962, 0.12962962962962962, 0.1574074074074074, 0.1574074074074074, 0.17592592592592593, 0.17592592592592593, 0.17592592592592593, 0.4074074074074074, 0.6111111111111112, 0.7314814814814815, 0.8055555555555556, 0.8796296296296297, 0.9351851851851852, 0.9351851851851852, 0.9074074074074074, 0.8240740740740741, 0.75, 0.6666666666666666, 0.5092592592592593, 0.39814814814814814, 0.25, 0.18518518518518517, 0.14814814814814814, 0.14814814814814814, 0.1388888888888889, 0.1388888888888889, 0.1388888888888889, 0.1388888888888889, 0.1388888888888889, 0.1388888888888889, 0.1388888888888889, 0.1388888888888889, 0.1388888888888889, 0.1388888888888889, 0.1388888888888889, 0.1388888888888889, 0.1388888888888889, 0.1388888888888889, 0.1574074074074074, 0.9166666666666666, 0.7314814814814815, 0.14814814814814814, 0.14814814814814814, 0.1388888888888889, 0.1388888888888889, 0.1388888888888889, 0.1388888888888889, 0.8981481481481481, 0.8981481481481481, 0.8981481481481481, 0.8981481481481481, 0.1388888888888889, 0.1388888888888889, 0.1388888888888889, 0.1388888888888889, 0.1388888888888889, 0.1388888888888889, 0.14814814814814814, 0.14814814814814814, 0.14814814814814814, 0.1574074074074074, 0.1574074074074074, 0.16666666666666666, 0.23148148148148148], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Methyltrn_RNA_4.gap.json b/pfam_gap_rates/Methyltrn_RNA_4.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d0ca0d18887a64c468fc32d5c3138c5dd1838ca0
--- /dev/null
+++ b/pfam_gap_rates/Methyltrn_RNA_4.gap.json
@@ -0,0 +1 @@
+{"family": "Methyltrn_RNA_4", "n_seqs": 144, "length": 188, "gap_rates": [0.6319444444444444, 0.09027777777777778, 0.034722222222222224, 0.013888888888888888, 0.013888888888888888, 0.013888888888888888, 0.013888888888888888, 0.013888888888888888, 0.013888888888888888, 0.013888888888888888, 0.006944444444444444, 0.006944444444444444, 0.006944444444444444, 0.013888888888888888, 0.006944444444444444, 0.006944444444444444, 0.006944444444444444, 0.006944444444444444, 0.006944444444444444, 0.006944444444444444, 0.006944444444444444, 0.006944444444444444, 0.006944444444444444, 0.006944444444444444, 0.006944444444444444, 0.006944444444444444, 0.006944444444444444, 0.006944444444444444, 0.006944444444444444, 0.006944444444444444, 0.006944444444444444, 0.006944444444444444, 0.006944444444444444, 0.006944444444444444, 0.006944444444444444, 0.006944444444444444, 0.006944444444444444, 0.006944444444444444, 0.006944444444444444, 0.006944444444444444, 0.006944444444444444, 0.006944444444444444, 0.006944444444444444, 0.006944444444444444, 0.006944444444444444, 0.006944444444444444, 0.006944444444444444, 0.006944444444444444, 0.006944444444444444, 0.006944444444444444, 0.006944444444444444, 0.006944444444444444, 0.006944444444444444, 0.006944444444444444, 0.006944444444444444, 0.006944444444444444, 0.006944444444444444, 0.006944444444444444, 0.006944444444444444, 0.006944444444444444, 0.006944444444444444, 0.006944444444444444, 0.006944444444444444, 0.006944444444444444, 0.020833333333333332, 0.006944444444444444, 0.006944444444444444, 0.013888888888888888, 0.006944444444444444, 0.006944444444444444, 0.006944444444444444, 0.006944444444444444, 0.006944444444444444, 0.006944444444444444, 0.006944444444444444, 0.006944444444444444, 0.006944444444444444, 0.006944444444444444, 0.006944444444444444, 0.006944444444444444, 0.006944444444444444, 0.006944444444444444, 0.006944444444444444, 0.006944444444444444, 0.006944444444444444, 0.006944444444444444, 0.006944444444444444, 0.006944444444444444, 0.006944444444444444, 0.006944444444444444, 0.006944444444444444, 0.006944444444444444, 0.006944444444444444, 0.006944444444444444, 0.006944444444444444, 0.013888888888888888, 0.013888888888888888, 0.020833333333333332, 0.013888888888888888, 0.027777777777777776, 0.027777777777777776, 0.020833333333333332, 0.006944444444444444, 0.006944444444444444, 0.006944444444444444, 0.006944444444444444, 0.006944444444444444, 0.006944444444444444, 0.006944444444444444, 0.006944444444444444, 0.006944444444444444, 0.9097222222222222, 0.9444444444444444, 0.9444444444444444, 0.9444444444444444, 0.8888888888888888, 0.09027777777777778, 0.013888888888888888, 0.006944444444444444, 0.013888888888888888, 0.006944444444444444, 0.006944444444444444, 0.006944444444444444, 0.006944444444444444, 0.006944444444444444, 0.006944444444444444, 0.006944444444444444, 0.006944444444444444, 0.006944444444444444, 0.013888888888888888, 0.013888888888888888, 0.9166666666666666, 0.375, 0.1736111111111111, 0.020833333333333332, 0.006944444444444444, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.006944444444444444, 0.006944444444444444, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.027777777777777776, 0.3472222222222222], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Mfa_like_1.gap.json b/pfam_gap_rates/Mfa_like_1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..3e263e3803867788bb60d901f6b97772ee67a406
--- /dev/null
+++ b/pfam_gap_rates/Mfa_like_1.gap.json
@@ -0,0 +1 @@
+{"family": "Mfa_like_1", "n_seqs": 247, "length": 435, "gap_rates": [0.7449392712550608, 0.4089068825910931, 0.27125506072874495, 0.22672064777327935, 0.19838056680161945, 0.1902834008097166, 0.19433198380566802, 0.1902834008097166, 0.1902834008097166, 0.1862348178137652, 0.8016194331983806, 0.8947368421052632, 0.9433198380566802, 0.9311740890688259, 0.8340080971659919, 0.7813765182186235, 0.1862348178137652, 0.27530364372469635, 0.25101214574898784, 0.7975708502024291, 0.242914979757085, 0.22672064777327935, 0.24696356275303644, 0.41295546558704455, 0.23076923076923078, 0.20647773279352227, 0.15789473684210525, 0.9392712550607287, 0.9271255060728745, 0.15789473684210525, 0.14979757085020243, 0.145748987854251, 0.14979757085020243, 0.15384615384615385, 0.15789473684210525, 0.8825910931174089, 0.9473684210526315, 0.9271255060728745, 0.8421052631578947, 0.7368421052631579, 0.5668016194331984, 0.3765182186234818, 0.23481781376518218, 0.21052631578947367, 0.19838056680161945, 0.1417004048582996, 0.13765182186234817, 0.15789473684210525, 0.13360323886639677, 0.12550607287449392, 0.1214574898785425, 0.12550607287449392, 0.7489878542510121, 0.8178137651821862, 0.9109311740890689, 0.9352226720647774, 0.8421052631578947, 0.7935222672064778, 0.6761133603238867, 0.23076923076923078, 0.14979757085020243, 0.1417004048582996, 0.1214574898785425, 0.10121457489878542, 0.9392712550607287, 0.9271255060728745, 0.09716599190283401, 0.0931174089068826, 0.08906882591093117, 0.08906882591093117, 0.08906882591093117, 0.08906882591093117, 0.08906882591093117, 0.08906882591093117, 0.7327935222672065, 0.8178137651821862, 0.9068825910931174, 0.9392712550607287, 0.8704453441295547, 0.7732793522267206, 0.7004048582995951, 0.5951417004048583, 0.5425101214574899, 0.38866396761133604, 0.30364372469635625, 0.2550607287449393, 0.21862348178137653, 0.19433198380566802, 0.17813765182186234, 0.1700404858299595, 0.1659919028340081, 0.13765182186234817, 0.12550607287449392, 0.11336032388663968, 0.09716599190283401, 0.10121457489878542, 0.09716599190283401, 0.10121457489878542, 0.10526315789473684, 0.10526315789473684, 0.10526315789473684, 0.14979757085020243, 0.13765182186234817, 0.14979757085020243, 0.7813765182186235, 0.8623481781376519, 0.9109311740890689, 0.9473684210526315, 0.9311740890688259, 0.8906882591093117, 0.8137651821862348, 0.7449392712550608, 0.10526315789473684, 0.08906882591093117, 0.06882591093117409, 0.06477732793522267, 0.08502024291497975, 0.08502024291497975, 0.06072874493927125, 0.06072874493927125, 0.7004048582995951, 0.06477732793522267, 0.07692307692307693, 0.06882591093117409, 0.06882591093117409, 0.8380566801619433, 0.9068825910931174, 0.9109311740890689, 0.8906882591093117, 0.5141700404858299, 0.2793522267206478, 0.10121457489878542, 0.06882591093117409, 0.05668016194331984, 0.05668016194331984, 0.048582995951417005, 0.048582995951417005, 0.048582995951417005, 0.048582995951417005, 0.044534412955465584, 0.048582995951417005, 0.048582995951417005, 0.07692307692307693, 0.09716599190283401, 0.09716599190283401, 0.0728744939271255, 0.048582995951417005, 0.044534412955465584, 0.048582995951417005, 0.05263157894736842, 0.06072874493927125, 0.8987854251012146, 0.9149797570850202, 0.8744939271255061, 0.25101214574898784, 0.18218623481781376, 0.15384615384615385, 0.9473684210526315, 0.09716599190283401, 0.08097165991902834, 0.7894736842105263, 0.902834008097166, 0.8582995951417004, 0.6518218623481782, 0.07692307692307693, 0.10526315789473684, 0.1214574898785425, 0.11336032388663968, 0.08097165991902834, 0.854251012145749, 0.8663967611336032, 0.902834008097166, 0.9311740890688259, 0.9473684210526315, 0.9392712550607287, 0.9109311740890689, 0.8866396761133604, 0.8663967611336032, 0.8380566801619433, 0.15384615384615385, 0.22267206477732793, 0.19433198380566802, 0.17408906882591094, 0.17408906882591094, 0.2145748987854251, 0.3765182186234818, 0.3684210526315789, 0.8299595141700404, 0.9311740890688259, 0.9473684210526315, 0.9149797570850202, 0.7854251012145749, 0.22267206477732793, 0.020242914979757085, 0.020242914979757085, 0.016194331983805668, 0.016194331983805668, 0.016194331983805668, 0.016194331983805668, 0.016194331983805668, 0.016194331983805668, 0.020242914979757085, 0.6518218623481782, 0.8623481781376519, 0.9473684210526315, 0.9149797570850202, 0.8178137651821862, 0.4089068825910931, 0.03643724696356275, 0.05668016194331984, 0.044534412955465584, 0.03643724696356275, 0.032388663967611336, 0.02834008097165992, 0.032388663967611336, 0.016194331983805668, 0.8502024291497976, 0.9109311740890689, 0.9433198380566802, 0.9473684210526315, 0.9230769230769231, 0.8947368421052632, 0.7894736842105263, 0.044534412955465584, 0.8987854251012146, 0.7894736842105263, 0.024291497975708502, 0.008097165991902834, 0.008097165991902834, 0.008097165991902834, 0.008097165991902834, 0.008097165991902834, 0.012145748987854251, 0.012145748987854251, 0.012145748987854251, 0.012145748987854251, 0.012145748987854251, 0.016194331983805668, 0.016194331983805668, 0.020242914979757085, 0.7246963562753036, 0.020242914979757085, 0.024291497975708502, 0.02834008097165992, 0.020242914979757085, 0.020242914979757085, 0.020242914979757085, 0.020242914979757085, 0.02834008097165992, 0.6923076923076923, 0.8380566801619433, 0.9230769230769231, 0.8663967611336032, 0.7449392712550608, 0.562753036437247, 0.2874493927125506, 0.30364372469635625, 0.19433198380566802, 0.4534412955465587, 0.29959514170040485, 0.23481781376518218, 0.048582995951417005, 0.032388663967611336, 0.03643724696356275, 0.024291497975708502, 0.024291497975708502, 0.032388663967611336, 0.044534412955465584, 0.03643724696356275, 0.8744939271255061, 0.9230769230769231, 0.9352226720647774, 0.9109311740890689, 0.8502024291497976, 0.04048582995951417, 0.04048582995951417, 0.04048582995951417, 0.044534412955465584, 0.06477732793522267, 0.06072874493927125, 0.8380566801619433, 0.8947368421052632, 0.9190283400809717, 0.8623481781376519, 0.8259109311740891, 0.05263157894736842, 0.06477732793522267, 0.06477732793522267, 0.05668016194331984, 0.05263157894736842, 0.05263157894736842, 0.048582995951417005, 0.06477732793522267, 0.05668016194331984, 0.8340080971659919, 0.8744939271255061, 0.902834008097166, 0.9149797570850202, 0.9271255060728745, 0.9352226720647774, 0.9271255060728745, 0.9271255060728745, 0.9149797570850202, 0.8906882591093117, 0.8582995951417004, 0.7854251012145749, 0.728744939271255, 0.6963562753036437, 0.5991902834008097, 0.5060728744939271, 0.46558704453441296, 0.4331983805668016, 0.3522267206477733, 0.242914979757085, 0.15384615384615385, 0.0728744939271255, 0.06882591093117409, 0.0728744939271255, 0.0728744939271255, 0.06882591093117409, 0.06882591093117409, 0.10931174089068826, 0.1659919028340081, 0.13360323886639677, 0.11740890688259109, 0.10121457489878542, 0.0931174089068826, 0.145748987854251, 0.15789473684210525, 0.242914979757085, 0.17813765182186234, 0.6720647773279352, 0.7732793522267206, 0.8866396761133604, 0.9433198380566802, 0.9190283400809717, 0.8178137651821862, 0.7004048582995951, 0.6194331983805668, 0.05263157894736842, 0.048582995951417005, 0.048582995951417005, 0.048582995951417005, 0.06477732793522267, 0.7651821862348178, 0.8987854251012146, 0.9352226720647774, 0.8421052631578947, 0.659919028340081, 0.340080971659919, 0.20242914979757085, 0.19433198380566802, 0.15789473684210525, 0.10526315789473684, 0.10931174089068826, 0.06477732793522267, 0.8906882591093117, 0.9190283400809717, 0.9392712550607287, 0.9068825910931174, 0.8825910931174089, 0.06072874493927125, 0.05668016194331984, 0.05263157894736842, 0.048582995951417005, 0.048582995951417005, 0.048582995951417005, 0.05668016194331984, 0.06072874493927125, 0.05263157894736842, 0.0728744939271255, 0.9433198380566802, 0.9433198380566802, 0.9352226720647774, 0.06882591093117409, 0.1214574898785425, 0.08502024291497975, 0.07692307692307693, 0.08097165991902834, 0.07692307692307693, 0.10121457489878542, 0.0931174089068826, 0.08097165991902834, 0.07692307692307693, 0.13765182186234817, 0.12550607287449392, 0.1659919028340081, 0.3603238866396761, 0.5060728744939271, 0.5344129554655871, 0.6477732793522267, 0.728744939271255, 0.805668016194332, 0.8502024291497976, 0.9109311740890689, 0.9473684210526315, 0.8947368421052632, 0.8259109311740891, 0.7732793522267206, 0.6963562753036437, 0.6072874493927125, 0.07692307692307693, 0.07692307692307693, 0.07692307692307693, 0.07692307692307693, 0.08502024291497975, 0.08906882591093117, 0.08906882591093117, 0.0931174089068826, 0.10121457489878542, 0.11336032388663968, 0.11336032388663968, 0.13360323886639677, 0.14979757085020243, 0.16194331983805668, 0.7206477732793523, 0.8340080971659919, 0.9433198380566802, 0.9149797570850202, 0.7611336032388664, 0.6396761133603239, 0.3684210526315789, 0.3076923076923077, 0.3157894736842105, 0.32388663967611336, 0.32793522267206476, 0.340080971659919, 0.3481781376518219, 0.3603238866396761, 0.3643724696356275, 0.3724696356275304, 0.38866396761133604, 0.38866396761133604, 0.4817813765182186, 0.8502024291497976], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/MinE.gap.json b/pfam_gap_rates/MinE.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a616d404fd8a48cc8827ac79a486789c7aa4b97a
--- /dev/null
+++ b/pfam_gap_rates/MinE.gap.json
@@ -0,0 +1 @@
+{"family": "MinE", "n_seqs": 706, "length": 78, "gap_rates": [0.13172804532577903, 0.03541076487252125, 0.0169971671388102, 0.0084985835694051, 0.007082152974504249, 0.007082152974504249, 0.007082152974504249, 0.007082152974504249, 0.0056657223796034, 0.0056657223796034, 0.00424929178470255, 0.00424929178470255, 0.0028328611898017, 0.0028328611898017, 0.0028328611898017, 0.0028328611898017, 0.0028328611898017, 0.8229461756373938, 0.9362606232294618, 0.5821529745042493, 0.021246458923512748, 0.0056657223796034, 0.0028328611898017, 0.00141643059490085, 0.0028328611898017, 0.00141643059490085, 0.0, 0.0, 0.0, 0.00141643059490085, 0.00141643059490085, 0.00141643059490085, 0.00141643059490085, 0.00141643059490085, 0.00141643059490085, 0.00141643059490085, 0.00141643059490085, 0.00141643059490085, 0.00141643059490085, 0.00141643059490085, 0.00141643059490085, 0.00141643059490085, 0.00141643059490085, 0.00141643059490085, 0.019830028328611898, 0.0169971671388102, 0.0028328611898017, 0.9178470254957507, 0.014164305949008499, 0.0113314447592068, 0.0028328611898017, 0.0028328611898017, 0.0028328611898017, 0.0028328611898017, 0.0028328611898017, 0.0028328611898017, 0.8597733711048159, 0.014164305949008499, 0.014164305949008499, 0.4943342776203966, 0.2818696883852691, 0.29603399433427763, 0.839943342776204, 0.9164305949008499, 0.8682719546742209, 0.8257790368271954, 0.4178470254957507, 0.22521246458923513, 0.039660056657223795, 0.039660056657223795, 0.039660056657223795, 0.039660056657223795, 0.039660056657223795, 0.039660056657223795, 0.04107648725212465, 0.0453257790368272, 0.056657223796033995, 0.26912181303116145], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/MipZ.gap.json b/pfam_gap_rates/MipZ.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..4923485c7fbccd34920b16c30f0de6abd2134e44
--- /dev/null
+++ b/pfam_gap_rates/MipZ.gap.json
@@ -0,0 +1 @@
+{"family": "MipZ", "n_seqs": 155, "length": 266, "gap_rates": [0.25806451612903225, 0.07096774193548387, 0.05161290322580645, 0.04516129032258064, 0.025806451612903226, 0.025806451612903226, 0.025806451612903226, 0.025806451612903226, 0.025806451612903226, 0.025806451612903226, 0.025806451612903226, 0.01935483870967742, 0.01935483870967742, 0.01935483870967742, 0.01935483870967742, 0.01935483870967742, 0.01935483870967742, 0.01935483870967742, 0.01935483870967742, 0.01935483870967742, 0.01935483870967742, 0.01935483870967742, 0.01935483870967742, 0.01935483870967742, 0.01935483870967742, 0.01935483870967742, 0.01935483870967742, 0.01935483870967742, 0.01935483870967742, 0.025806451612903226, 0.01935483870967742, 0.01935483870967742, 0.01935483870967742, 0.01935483870967742, 0.012903225806451613, 0.012903225806451613, 0.012903225806451613, 0.012903225806451613, 0.025806451612903226, 0.06451612903225806, 0.01935483870967742, 0.01935483870967742, 0.012903225806451613, 0.012903225806451613, 0.012903225806451613, 0.012903225806451613, 0.01935483870967742, 0.01935483870967742, 0.025806451612903226, 0.01935483870967742, 0.012903225806451613, 0.012903225806451613, 0.012903225806451613, 0.03870967741935484, 0.03870967741935484, 0.04516129032258064, 0.05161290322580645, 0.05161290322580645, 0.04516129032258064, 0.05806451612903226, 0.03225806451612903, 0.025806451612903226, 0.025806451612903226, 0.01935483870967742, 0.01935483870967742, 0.01935483870967742, 0.01935483870967742, 0.2, 0.23225806451612904, 0.24516129032258063, 0.25161290322580643, 0.27741935483870966, 0.33548387096774196, 0.34838709677419355, 0.3419354838709677, 0.34838709677419355, 0.1935483870967742, 0.1870967741935484, 0.12903225806451613, 0.1032258064516129, 0.07741935483870968, 0.05806451612903226, 0.08387096774193549, 0.09032258064516129, 0.1032258064516129, 0.2838709677419355, 0.24516129032258063, 0.06451612903225806, 0.05161290322580645, 0.03870967741935484, 0.03870967741935484, 0.03225806451612903, 0.025806451612903226, 0.01935483870967742, 0.012903225806451613, 0.01935483870967742, 0.01935483870967742, 0.05161290322580645, 0.01935483870967742, 0.012903225806451613, 0.012903225806451613, 0.012903225806451613, 0.012903225806451613, 0.012903225806451613, 0.012903225806451613, 0.012903225806451613, 0.012903225806451613, 0.012903225806451613, 0.025806451612903226, 0.025806451612903226, 0.03225806451612903, 0.03870967741935484, 0.03870967741935484, 0.03870967741935484, 0.03870967741935484, 0.03870967741935484, 0.03870967741935484, 0.03870967741935484, 0.03870967741935484, 0.03870967741935484, 0.04516129032258064, 0.03225806451612903, 0.03225806451612903, 0.03870967741935484, 0.04516129032258064, 0.04516129032258064, 0.04516129032258064, 0.04516129032258064, 0.05161290322580645, 0.05806451612903226, 0.07741935483870968, 0.07741935483870968, 0.07741935483870968, 0.08387096774193549, 0.08387096774193549, 0.08387096774193549, 0.10967741935483871, 0.13548387096774195, 0.14193548387096774, 0.14193548387096774, 0.14838709677419354, 0.14838709677419354, 0.15483870967741936, 0.16129032258064516, 0.16129032258064516, 0.16129032258064516, 0.18064516129032257, 0.16129032258064516, 0.16129032258064516, 0.16129032258064516, 0.16129032258064516, 0.16129032258064516, 0.16774193548387098, 0.16774193548387098, 0.16774193548387098, 0.16774193548387098, 0.16774193548387098, 0.16774193548387098, 0.16774193548387098, 0.16774193548387098, 0.16774193548387098, 0.16774193548387098, 0.16774193548387098, 0.16774193548387098, 0.16774193548387098, 0.16774193548387098, 0.16774193548387098, 0.16774193548387098, 0.16774193548387098, 0.9419354838709677, 0.9483870967741935, 0.9483870967741935, 0.9161290322580645, 0.16774193548387098, 0.16774193548387098, 0.16774193548387098, 0.16774193548387098, 0.16774193548387098, 0.16774193548387098, 0.17419354838709677, 0.17419354838709677, 0.17419354838709677, 0.17419354838709677, 0.17419354838709677, 0.17419354838709677, 0.17419354838709677, 0.17419354838709677, 0.17419354838709677, 0.17419354838709677, 0.17419354838709677, 0.17419354838709677, 0.17419354838709677, 0.17419354838709677, 0.17419354838709677, 0.17419354838709677, 0.17419354838709677, 0.17419354838709677, 0.17419354838709677, 0.17419354838709677, 0.17419354838709677, 0.17419354838709677, 0.17419354838709677, 0.17419354838709677, 0.17419354838709677, 0.17419354838709677, 0.17419354838709677, 0.17419354838709677, 0.17419354838709677, 0.17419354838709677, 0.17419354838709677, 0.17419354838709677, 0.17419354838709677, 0.17419354838709677, 0.17419354838709677, 0.17419354838709677, 0.17419354838709677, 0.17419354838709677, 0.17419354838709677, 0.18064516129032257, 0.18064516129032257, 0.18064516129032257, 0.18064516129032257, 0.18064516129032257, 0.18064516129032257, 0.18064516129032257, 0.18064516129032257, 0.18064516129032257, 0.18064516129032257, 0.18064516129032257, 0.1870967741935484, 0.1870967741935484, 0.1870967741935484, 0.1870967741935484, 0.1870967741935484, 0.1870967741935484, 0.1870967741935484, 0.1870967741935484, 0.1870967741935484, 0.1870967741935484, 0.1870967741935484, 0.4, 0.36129032258064514, 0.6967741935483871, 0.2, 0.2, 0.1870967741935484, 0.1870967741935484, 0.1870967741935484, 0.1870967741935484, 0.1870967741935484, 0.1870967741935484, 0.1870967741935484, 0.1870967741935484, 0.1870967741935484, 0.1870967741935484, 0.1870967741935484, 0.1870967741935484, 0.1870967741935484, 0.1870967741935484, 0.1870967741935484, 0.1870967741935484, 0.2, 0.2, 0.2, 0.22580645161290322, 0.27741935483870966], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Mis12.gap.json b/pfam_gap_rates/Mis12.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..1a31de8bfcae697927d9eb6fe41218ff4776753b
--- /dev/null
+++ b/pfam_gap_rates/Mis12.gap.json
@@ -0,0 +1 @@
+{"family": "Mis12", "n_seqs": 234, "length": 201, "gap_rates": [0.3717948717948718, 0.3333333333333333, 0.2692307692307692, 0.18803418803418803, 0.1452991452991453, 0.13675213675213677, 0.13247863247863248, 0.11965811965811966, 0.11965811965811966, 0.11538461538461539, 0.10683760683760683, 0.10256410256410256, 0.08974358974358974, 0.08974358974358974, 0.08974358974358974, 0.08974358974358974, 0.08974358974358974, 0.08974358974358974, 0.08974358974358974, 0.0811965811965812, 0.0811965811965812, 0.07264957264957266, 0.07264957264957266, 0.07264957264957266, 0.06837606837606838, 0.0641025641025641, 0.0641025641025641, 0.0641025641025641, 0.06837606837606838, 0.06837606837606838, 0.06837606837606838, 0.06837606837606838, 0.06837606837606838, 0.0641025641025641, 0.14102564102564102, 0.13247863247863248, 0.6581196581196581, 0.6666666666666666, 0.6709401709401709, 0.6794871794871795, 0.7094017094017094, 0.7435897435897436, 0.7863247863247863, 0.8205128205128205, 0.9188034188034188, 0.9444444444444444, 0.9316239316239316, 0.8675213675213675, 0.8034188034188035, 0.7606837606837606, 0.7136752136752137, 0.6837606837606838, 0.6709401709401709, 0.6666666666666666, 0.6623931623931624, 0.6452991452991453, 0.20512820512820512, 0.5213675213675214, 0.49572649572649574, 0.44871794871794873, 0.44017094017094016, 0.41452991452991456, 0.3717948717948718, 0.3418803418803419, 0.21794871794871795, 0.9017094017094017, 0.905982905982906, 0.9102564102564102, 0.9316239316239316, 0.9358974358974359, 0.9145299145299145, 0.9102564102564102, 0.905982905982906, 0.8888888888888888, 0.2264957264957265, 0.15384615384615385, 0.14102564102564102, 0.11538461538461539, 0.05128205128205128, 0.05555555555555555, 0.038461538461538464, 0.038461538461538464, 0.038461538461538464, 0.038461538461538464, 0.03418803418803419, 0.03418803418803419, 0.03418803418803419, 0.029914529914529916, 0.02564102564102564, 0.021367521367521368, 0.017094017094017096, 0.017094017094017096, 0.017094017094017096, 0.017094017094017096, 0.017094017094017096, 0.017094017094017096, 0.017094017094017096, 0.017094017094017096, 0.017094017094017096, 0.017094017094017096, 0.017094017094017096, 0.017094017094017096, 0.017094017094017096, 0.017094017094017096, 0.004273504273504274, 0.004273504273504274, 0.004273504273504274, 0.004273504273504274, 0.004273504273504274, 0.004273504273504274, 0.004273504273504274, 0.008547008547008548, 0.004273504273504274, 0.004273504273504274, 0.004273504273504274, 0.008547008547008548, 0.008547008547008548, 0.008547008547008548, 0.008547008547008548, 0.008547008547008548, 0.01282051282051282, 0.3418803418803419, 0.34615384615384615, 0.36752136752136755, 0.46153846153846156, 0.8632478632478633, 0.9487179487179487, 0.811965811965812, 0.12393162393162394, 0.029914529914529916, 0.02564102564102564, 0.021367521367521368, 0.017094017094017096, 0.021367521367521368, 0.02564102564102564, 0.8717948717948718, 0.9316239316239316, 0.9487179487179487, 0.9401709401709402, 0.8846153846153846, 0.8504273504273504, 0.06837606837606838, 0.14102564102564102, 0.13247863247863248, 0.14102564102564102, 0.05128205128205128, 0.09401709401709402, 0.14957264957264957, 0.37606837606837606, 0.6282051282051282, 0.7435897435897436, 0.8205128205128205, 0.8760683760683761, 0.8803418803418803, 0.9145299145299145, 0.9316239316239316, 0.9401709401709402, 0.9444444444444444, 0.9487179487179487, 0.9401709401709402, 0.9401709401709402, 0.9188034188034188, 0.8931623931623932, 0.8760683760683761, 0.8504273504273504, 0.7735042735042735, 0.6495726495726496, 0.5854700854700855, 0.3076923076923077, 0.10683760683760683, 0.08547008547008547, 0.05982905982905983, 0.358974358974359, 0.10683760683760683, 0.8376068376068376, 0.9017094017094017, 0.6666666666666666, 0.07692307692307693, 0.07264957264957266, 0.07264957264957266, 0.07264957264957266, 0.07264957264957266, 0.07264957264957266, 0.07264957264957266, 0.07264957264957266, 0.07264957264957266, 0.07264957264957266, 0.07264957264957266, 0.07264957264957266, 0.09829059829059829, 0.10683760683760683, 0.11965811965811966, 0.1282051282051282, 0.13247863247863248, 0.13675213675213677, 0.15384615384615385, 0.16666666666666666, 0.21367521367521367, 0.24786324786324787, 0.42735042735042733, 0.9487179487179487], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/MitMem_reg.gap.json b/pfam_gap_rates/MitMem_reg.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..954b2b20c8273e23d1508a38913fbbc5f41f37a9
--- /dev/null
+++ b/pfam_gap_rates/MitMem_reg.gap.json
@@ -0,0 +1 @@
+{"family": "MitMem_reg", "n_seqs": 1228, "length": 175, "gap_rates": [0.17996742671009772, 0.13273615635179153, 0.11319218241042345, 0.10667752442996743, 0.10260586319218241, 0.7312703583061889, 0.7296416938110749, 0.09609120521172639, 0.09527687296416938, 0.09283387622149837, 0.09039087947882736, 0.09039087947882736, 0.08876221498371335, 0.08631921824104234, 0.4169381107491857, 0.10097719869706841, 0.10260586319218241, 0.1245928338762215, 0.44706840390879476, 0.39087947882736157, 0.43403908794788276, 0.8892508143322475, 0.9454397394136808, 0.8070032573289903, 0.4193811074918567, 0.3534201954397394, 0.033387622149837134, 0.029315960912052116, 0.02768729641693811, 0.025244299674267102, 0.023615635179153095, 0.023615635179153095, 0.02280130293159609, 0.021986970684039087, 0.018729641693811076, 0.011400651465798045, 0.010586319218241042, 0.010586319218241042, 0.009771986970684038, 0.008957654723127036, 0.006514657980456026, 0.7247557003257329, 0.7247557003257329, 0.7247557003257329, 0.7255700325732899, 0.7263843648208469, 0.7263843648208469, 0.7271986970684039, 0.7280130293159609, 0.7288273615635179, 0.7288273615635179, 0.7312703583061889, 0.7320846905537459, 0.7320846905537459, 0.7320846905537459, 0.7328990228013029, 0.7337133550488599, 0.7337133550488599, 0.7337133550488599, 0.7353420195439739, 0.737785016286645, 0.7345276872964169, 0.7337133550488599, 0.7337133550488599, 0.7328990228013029, 0.7328990228013029, 0.7320846905537459, 0.7320846905537459, 0.7312703583061889, 0.7288273615635179, 0.7288273615635179, 0.7280130293159609, 0.7271986970684039, 0.7263843648208469, 0.7263843648208469, 0.7255700325732899, 0.7255700325732899, 0.7247557003257329, 0.7247557003257329, 0.7247557003257329, 0.008143322475570033, 0.008957654723127036, 0.008957654723127036, 0.008143322475570033, 0.009771986970684038, 0.007328990228013029, 0.008143322475570033, 0.008143322475570033, 0.007328990228013029, 0.007328990228013029, 0.007328990228013029, 0.007328990228013029, 0.008143322475570033, 0.010586319218241042, 0.011400651465798045, 0.009771986970684038, 0.9462540716612378, 0.016286644951140065, 0.023615635179153095, 0.014657980456026058, 0.9030944625407166, 0.013843648208469055, 0.013029315960912053, 0.009771986970684038, 0.009771986970684038, 0.010586319218241042, 0.008143322475570033, 0.7923452768729642, 0.008957654723127036, 0.009771986970684038, 0.011400651465798045, 0.011400651465798045, 0.011400651465798045, 0.013029315960912053, 0.013843648208469055, 0.013843648208469055, 0.013843648208469055, 0.28338762214983715, 0.28664495114006516, 0.28583061889250816, 0.035830618892508145, 0.7247557003257329, 0.6913680781758957, 0.030944625407166124, 0.033387622149837134, 0.03175895765472313, 0.03175895765472313, 0.9112377850162866, 0.9201954397394136, 0.9258957654723127, 0.9291530944625407, 0.9397394136807817, 0.9446254071661238, 0.9478827361563518, 0.9438110749185668, 0.9348534201954397, 0.9267100977198697, 0.9234527687296417, 0.9136807817589576, 0.9071661237785016, 0.2752442996742671, 0.15879478827361562, 0.15065146579804561, 0.16449511400651465, 0.16856677524429967, 0.1767100977198697, 0.1986970684039088, 0.21335504885993486, 0.2263843648208469, 0.22231270358306188, 0.20846905537459284, 0.21498371335504887, 0.21579804560260588, 0.21905537459283386, 0.22149837133550487, 0.2263843648208469, 0.2304560260586319, 0.23452768729641693, 0.24348534201954397, 0.25732899022801303, 0.26140065146579805, 0.26384364820846906, 0.2671009771986971, 0.2899022801302932, 0.2931596091205212, 0.2939739413680782, 0.2980456026058632, 0.2996742671009772, 0.30130293159609123, 0.30456026058631924, 0.31677524429967424, 0.3330618892508143, 0.39006514657980457, 0.497557003257329, 0.6856677524429967], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Mlo.gap.json b/pfam_gap_rates/Mlo.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..4354b7a2c268d57f74afb42c655458d43e88f967
--- /dev/null
+++ b/pfam_gap_rates/Mlo.gap.json
@@ -0,0 +1 @@
+{"family": "Mlo", "n_seqs": 353, "length": 496, "gap_rates": [0.6515580736543909, 0.5779036827195467, 0.5722379603399433, 0.5552407932011332, 0.5524079320113314, 0.5495750708215298, 0.5495750708215298, 0.5269121813031161, 0.5155807365439093, 0.5155807365439093, 0.5127478753541076, 0.509915014164306, 0.5014164305949008, 0.5014164305949008, 0.5014164305949008, 0.5014164305949008, 0.5014164305949008, 0.4985835694050991, 0.4985835694050991, 0.4985835694050991, 0.4985835694050991, 0.4985835694050991, 0.4985835694050991, 0.49575070821529743, 0.49291784702549574, 0.49291784702549574, 0.49291784702549574, 0.49008498583569404, 0.49008498583569404, 0.49008498583569404, 0.48441926345609065, 0.48441926345609065, 0.48441926345609065, 0.48158640226628896, 0.48725212464589235, 0.49008498583569404, 0.49291784702549574, 0.48441926345609065, 0.48441926345609065, 0.5014164305949008, 0.48441926345609065, 0.49008498583569404, 0.49291784702549574, 0.49291784702549574, 0.49008498583569404, 0.47875354107648727, 0.47875354107648727, 0.4730878186968839, 0.4702549575070821, 0.4702549575070821, 0.46742209631728043, 0.46458923512747874, 0.45609065155807366, 0.46742209631728043, 0.4702549575070821, 0.45609065155807366, 0.45609065155807366, 0.45609065155807366, 0.45609065155807366, 0.45609065155807366, 0.45892351274787535, 0.45892351274787535, 0.45892351274787535, 0.45892351274787535, 0.45892351274787535, 0.45892351274787535, 0.45609065155807366, 0.46175637393767704, 0.47592067988668557, 0.48725212464589235, 0.49008498583569404, 0.49575070821529743, 0.49575070821529743, 0.49575070821529743, 0.49575070821529743, 0.49575070821529743, 0.49575070821529743, 0.49575070821529743, 0.49575070821529743, 0.49575070821529743, 0.5014164305949008, 0.886685552407932, 0.5155807365439093, 0.5184135977337111, 0.5184135977337111, 0.5127478753541076, 0.5127478753541076, 0.5155807365439093, 0.5184135977337111, 0.5184135977337111, 0.5184135977337111, 0.5240793201133145, 0.5240793201133145, 0.5269121813031161, 0.5269121813031161, 0.943342776203966, 0.5354107648725213, 0.5835694050991501, 0.603399433427762, 0.6175637393767706, 0.6515580736543909, 0.6912181303116147, 0.6827195467422096, 0.8611898016997167, 0.9008498583569405, 0.9461756373937678, 0.9348441926345609, 0.886685552407932, 0.8441926345609065, 0.660056657223796, 0.6798866855524079, 0.6543909348441926, 0.6430594900849859, 0.6430594900849859, 0.6345609065155807, 0.6288951841359773, 0.6685552407932012, 0.6827195467422096, 0.6770538243626062, 0.8838526912181303, 0.6685552407932012, 0.9490084985835694, 0.9376770538243626, 0.6430594900849859, 0.6062322946175638, 0.603399433427762, 0.603399433427762, 0.6005665722379604, 0.5949008498583569, 0.5864022662889519, 0.56657223796034, 0.5637393767705382, 0.8838526912181303, 0.7535410764872521, 0.5325779036827195, 0.5325779036827195, 0.5325779036827195, 0.5269121813031161, 0.5269121813031161, 0.5269121813031161, 0.7365439093484419, 0.5155807365439093, 0.5042492917847026, 0.5042492917847026, 0.509915014164306, 0.5127478753541076, 0.5127478753541076, 0.509915014164306, 0.509915014164306, 0.5070821529745042, 0.5042492917847026, 0.5042492917847026, 0.5014164305949008, 0.5042492917847026, 0.5042492917847026, 0.5042492917847026, 0.5042492917847026, 0.5014164305949008, 0.5014164305949008, 0.4985835694050991, 0.4985835694050991, 0.4985835694050991, 0.4985835694050991, 0.4985835694050991, 0.49575070821529743, 0.49575070821529743, 0.49575070821529743, 0.4985835694050991, 0.4985835694050991, 0.4985835694050991, 0.4985835694050991, 0.4985835694050991, 0.5014164305949008, 0.4985835694050991, 0.49575070821529743, 0.49575070821529743, 0.49575070821529743, 0.49575070821529743, 0.49575070821529743, 0.4985835694050991, 0.4985835694050991, 0.48725212464589235, 0.49008498583569404, 0.49575070821529743, 0.49575070821529743, 0.49291784702549574, 0.49575070821529743, 0.49575070821529743, 0.49575070821529743, 0.49575070821529743, 0.4985835694050991, 0.4985835694050991, 0.5042492917847026, 0.5155807365439093, 0.5184135977337111, 0.5410764872521246, 0.546742209631728, 0.5524079320113314, 0.546742209631728, 0.5240793201133145, 0.5240793201133145, 0.9348441926345609, 0.5354107648725213, 0.5127478753541076, 0.5155807365439093, 0.5127478753541076, 0.5212464589235127, 0.5184135977337111, 0.5184135977337111, 0.5184135977337111, 0.5155807365439093, 0.5127478753541076, 0.5127478753541076, 0.509915014164306, 0.509915014164306, 0.509915014164306, 0.5070821529745042, 0.5042492917847026, 0.5014164305949008, 0.5042492917847026, 0.773371104815864, 0.49291784702549574, 0.4985835694050991, 0.5325779036827195, 0.5014164305949008, 0.4985835694050991, 0.49575070821529743, 0.49575070821529743, 0.49008498583569404, 0.49008498583569404, 0.49008498583569404, 0.48441926345609065, 0.49008498583569404, 0.47875354107648727, 0.4730878186968839, 0.4730878186968839, 0.47875354107648727, 0.47875354107648727, 0.4730878186968839, 0.4730878186968839, 0.47592067988668557, 0.47592067988668557, 0.47875354107648727, 0.4730878186968839, 0.48158640226628896, 0.48441926345609065, 0.47875354107648727, 0.47592067988668557, 0.4730878186968839, 0.4730878186968839, 0.4702549575070821, 0.46742209631728043, 0.46742209631728043, 0.46742209631728043, 0.46742209631728043, 0.46742209631728043, 0.4730878186968839, 0.4730878186968839, 0.47875354107648727, 0.48441926345609065, 0.48441926345609065, 0.48725212464589235, 0.49008498583569404, 0.49291784702549574, 0.5014164305949008, 0.5864022662889519, 0.9263456090651558, 0.9263456090651558, 0.47875354107648727, 0.47875354107648727, 0.47875354107648727, 0.47875354107648727, 0.47592067988668557, 0.47592067988668557, 0.46742209631728043, 0.46742209631728043, 0.46458923512747874, 0.46458923512747874, 0.45892351274787535, 0.45892351274787535, 0.45892351274787535, 0.45892351274787535, 0.45892351274787535, 0.45892351274787535, 0.45892351274787535, 0.45892351274787535, 0.45892351274787535, 0.46175637393767704, 0.46458923512747874, 0.46175637393767704, 0.45892351274787535, 0.46175637393767704, 0.46458923512747874, 0.46458923512747874, 0.46458923512747874, 0.4702549575070821, 0.46742209631728043, 0.4702549575070821, 0.4730878186968839, 0.4730878186968839, 0.47592067988668557, 0.47592067988668557, 0.47592067988668557, 0.47592067988668557, 0.48158640226628896, 0.47592067988668557, 0.4730878186968839, 0.4730878186968839, 0.4730878186968839, 0.47592067988668557, 0.47592067988668557, 0.47592067988668557, 0.47875354107648727, 0.47592067988668557, 0.4730878186968839, 0.48158640226628896, 0.48725212464589235, 0.48725212464589235, 0.48158640226628896, 0.47875354107648727, 0.47875354107648727, 0.5014164305949008, 0.5014164305949008, 0.5042492917847026, 0.5014164305949008, 0.4985835694050991, 0.49575070821529743, 0.49291784702549574, 0.49008498583569404, 0.49291784702549574, 0.49008498583569404, 0.49008498583569404, 0.49008498583569404, 0.49575070821529743, 0.4985835694050991, 0.49291784702549574, 0.49575070821529743, 0.49575070821529743, 0.49575070821529743, 0.509915014164306, 0.5070821529745042, 0.509915014164306, 0.5014164305949008, 0.5354107648725213, 0.5269121813031161, 0.5240793201133145, 0.5184135977337111, 0.5014164305949008, 0.5184135977337111, 0.5042492917847026, 0.5070821529745042, 0.49008498583569404, 0.48441926345609065, 0.47875354107648727, 0.47592067988668557, 0.4730878186968839, 0.4702549575070821, 0.46742209631728043, 0.46742209631728043, 0.46742209631728043, 0.4730878186968839, 0.4730878186968839, 0.47592067988668557, 0.47592067988668557, 0.47875354107648727, 0.47875354107648727, 0.47875354107648727, 0.47875354107648727, 0.4730878186968839, 0.47592067988668557, 0.47875354107648727, 0.47875354107648727, 0.47875354107648727, 0.47875354107648727, 0.47875354107648727, 0.47592067988668557, 0.47592067988668557, 0.46458923512747874, 0.4730878186968839, 0.4730878186968839, 0.4730878186968839, 0.4730878186968839, 0.4702549575070821, 0.4730878186968839, 0.47592067988668557, 0.47592067988668557, 0.47875354107648727, 0.48158640226628896, 0.48158640226628896, 0.47875354107648727, 0.4702549575070821, 0.48158640226628896, 0.48725212464589235, 0.49008498583569404, 0.4985835694050991, 0.5014164305949008, 0.5070821529745042, 0.5042492917847026, 0.5070821529745042, 0.5070821529745042, 0.5042492917847026, 0.5070821529745042, 0.5042492917847026, 0.5070821529745042, 0.5070821529745042, 0.5042492917847026, 0.5042492917847026, 0.4985835694050991, 0.4985835694050991, 0.5014164305949008, 0.5014164305949008, 0.5014164305949008, 0.5042492917847026, 0.5070821529745042, 0.5070821529745042, 0.5070821529745042, 0.5042492917847026, 0.5042492917847026, 0.5042492917847026, 0.5042492917847026, 0.5070821529745042, 0.5070821529745042, 0.509915014164306, 0.5042492917847026, 0.5014164305949008, 0.5014164305949008, 0.5042492917847026, 0.5014164305949008, 0.5014164305949008, 0.5042492917847026, 0.509915014164306, 0.509915014164306, 0.509915014164306, 0.5042492917847026, 0.5269121813031161, 0.5325779036827195, 0.5325779036827195, 0.5354107648725213, 0.5354107648725213, 0.5382436260623229, 0.5382436260623229, 0.5410764872521246, 0.5439093484419264, 0.5439093484419264, 0.546742209631728, 0.546742209631728, 0.546742209631728, 0.546742209631728, 0.5609065155807366, 0.5609065155807366, 0.5637393767705382, 0.5637393767705382, 0.5609065155807366, 0.5609065155807366, 0.5609065155807366, 0.5609065155807366, 0.5609065155807366, 0.5609065155807366, 0.5637393767705382, 0.5637393767705382, 0.5694050991501416, 0.5779036827195467, 0.5779036827195467, 0.5920679886685553, 0.5977337110481586, 0.6288951841359773, 0.6430594900849859, 0.6543909348441926, 0.6543909348441926, 0.660056657223796, 0.6685552407932012, 0.943342776203966, 0.9320113314447592, 0.7138810198300283, 0.7252124645892352, 0.7620396600566572, 0.7422096317280453, 0.7422096317280453, 0.7705382436260623, 0.7875354107648725, 0.7932011331444759, 0.7960339943342776, 0.8130311614730878, 0.8243626062322946, 0.8470254957507082, 0.8555240793201133, 0.8583569405099151, 0.8611898016997167, 0.8640226628895185, 0.8753541076487252, 0.8753541076487252, 0.8838526912181303, 0.8923512747875354, 0.8923512747875354, 0.9036827195467422, 0.9320113314447592], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Mmp37.gap.json b/pfam_gap_rates/Mmp37.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..9602ae45eda5df1a625c2c33ff7a4fc5eb83b871
--- /dev/null
+++ b/pfam_gap_rates/Mmp37.gap.json
@@ -0,0 +1 @@
+{"family": "Mmp37", "n_seqs": 365, "length": 394, "gap_rates": [0.6356164383561644, 0.4958904109589041, 0.41643835616438357, 0.3561643835616438, 0.32602739726027397, 0.30684931506849317, 0.2876712328767123, 0.2876712328767123, 0.2876712328767123, 0.29041095890410956, 0.40821917808219177, 0.8931506849315068, 0.2493150684931507, 0.2493150684931507, 0.2465753424657534, 0.24383561643835616, 0.2410958904109589, 0.2410958904109589, 0.2410958904109589, 0.23835616438356164, 0.23835616438356164, 0.23835616438356164, 0.23835616438356164, 0.23835616438356164, 0.23835616438356164, 0.23835616438356164, 0.23835616438356164, 0.31232876712328766, 0.3178082191780822, 0.7561643835616438, 0.7726027397260274, 0.7808219178082192, 0.7972602739726027, 0.8027397260273973, 0.8027397260273973, 0.8054794520547945, 0.821917808219178, 0.8493150684931506, 0.873972602739726, 0.936986301369863, 0.8876712328767123, 0.863013698630137, 0.8328767123287671, 0.8136986301369863, 0.8027397260273973, 0.8027397260273973, 0.8, 0.7835616438356164, 0.7808219178082192, 0.7589041095890411, 0.736986301369863, 0.6821917808219178, 0.6027397260273972, 0.4876712328767123, 0.27123287671232876, 0.2219178082191781, 0.2136986301369863, 0.20821917808219179, 0.2054794520547945, 0.18082191780821918, 0.17534246575342466, 0.17534246575342466, 0.17534246575342466, 0.17534246575342466, 0.17534246575342466, 0.17534246575342466, 0.17534246575342466, 0.1780821917808219, 0.1780821917808219, 0.1780821917808219, 0.1780821917808219, 0.17534246575342466, 0.17534246575342466, 0.17534246575342466, 0.16986301369863013, 0.1643835616438356, 0.1643835616438356, 0.1589041095890411, 0.1589041095890411, 0.1589041095890411, 0.1589041095890411, 0.1589041095890411, 0.1589041095890411, 0.1589041095890411, 0.1589041095890411, 0.1589041095890411, 0.1589041095890411, 0.15616438356164383, 0.15616438356164383, 0.16712328767123288, 0.16712328767123288, 0.9342465753424658, 0.6876712328767123, 0.1726027397260274, 0.16986301369863013, 0.1643835616438356, 0.1589041095890411, 0.15616438356164383, 0.15616438356164383, 0.15342465753424658, 0.15342465753424658, 0.1506849315068493, 0.15616438356164383, 0.36712328767123287, 0.1506849315068493, 0.14794520547945206, 0.136986301369863, 0.136986301369863, 0.14246575342465753, 0.136986301369863, 0.136986301369863, 0.136986301369863, 0.136986301369863, 0.14794520547945206, 0.136986301369863, 0.136986301369863, 0.136986301369863, 0.136986301369863, 0.8438356164383561, 0.9095890410958904, 0.9452054794520548, 0.9178082191780822, 0.8931506849315068, 0.7945205479452054, 0.136986301369863, 0.136986301369863, 0.14246575342465753, 0.14520547945205478, 0.14520547945205478, 0.14246575342465753, 0.14246575342465753, 0.14246575342465753, 0.14246575342465753, 0.14246575342465753, 0.13972602739726028, 0.14246575342465753, 0.14246575342465753, 0.14246575342465753, 0.14246575342465753, 0.14246575342465753, 0.14246575342465753, 0.14246575342465753, 0.13972602739726028, 0.13972602739726028, 0.13972602739726028, 0.13972602739726028, 0.14246575342465753, 0.136986301369863, 0.136986301369863, 0.136986301369863, 0.136986301369863, 0.136986301369863, 0.136986301369863, 0.136986301369863, 0.136986301369863, 0.136986301369863, 0.136986301369863, 0.13972602739726028, 0.15616438356164383, 0.15616438356164383, 0.1589041095890411, 0.9452054794520548, 0.16986301369863013, 0.1726027397260274, 0.7726027397260274, 0.9424657534246575, 0.947945205479452, 0.8904109589041096, 0.7123287671232876, 0.17534246575342466, 0.1726027397260274, 0.16712328767123288, 0.16712328767123288, 0.1643835616438356, 0.1643835616438356, 0.16164383561643836, 0.1589041095890411, 0.15616438356164383, 0.15616438356164383, 0.15616438356164383, 0.15616438356164383, 0.15616438356164383, 0.15616438356164383, 0.15342465753424658, 0.14794520547945206, 0.1506849315068493, 0.15342465753424658, 0.1506849315068493, 0.1506849315068493, 0.1506849315068493, 0.1506849315068493, 0.14794520547945206, 0.9342465753424658, 0.14794520547945206, 0.14794520547945206, 0.14794520547945206, 0.1506849315068493, 0.14794520547945206, 0.14520547945205478, 0.14520547945205478, 0.13972602739726028, 0.13972602739726028, 0.13972602739726028, 0.13972602739726028, 0.13150684931506848, 0.13150684931506848, 0.13150684931506848, 0.13150684931506848, 0.13150684931506848, 0.13150684931506848, 0.13424657534246576, 0.12876712328767123, 0.12876712328767123, 0.12876712328767123, 0.12876712328767123, 0.12876712328767123, 0.12876712328767123, 0.13424657534246576, 0.13972602739726028, 0.6493150684931507, 0.16986301369863013, 0.1506849315068493, 0.14520547945205478, 0.14246575342465753, 0.14794520547945206, 0.14794520547945206, 0.14794520547945206, 0.14520547945205478, 0.14520547945205478, 0.14794520547945206, 0.14794520547945206, 0.14794520547945206, 0.14794520547945206, 0.14794520547945206, 0.1506849315068493, 0.1506849315068493, 0.1506849315068493, 0.14794520547945206, 0.14794520547945206, 0.1506849315068493, 0.1589041095890411, 0.1589041095890411, 0.1589041095890411, 0.16164383561643836, 0.1643835616438356, 0.1643835616438356, 0.16712328767123288, 0.16986301369863013, 0.16986301369863013, 0.1780821917808219, 0.1863013698630137, 0.19726027397260273, 0.2, 0.20273972602739726, 0.21095890410958903, 0.21643835616438356, 0.28493150684931506, 0.31232876712328766, 0.4575342465753425, 0.5342465753424658, 0.5424657534246575, 0.5780821917808219, 0.5506849315068493, 0.5041095890410959, 0.7287671232876712, 0.7726027397260274, 0.7917808219178082, 0.8931506849315068, 0.9424657534246575, 0.8082191780821918, 0.7835616438356164, 0.7616438356164383, 0.7123287671232876, 0.2465753424657534, 0.2219178082191781, 0.2219178082191781, 0.2191780821917808, 0.2191780821917808, 0.2191780821917808, 0.2219178082191781, 0.22465753424657534, 0.2273972602739726, 0.23013698630136986, 0.2273972602739726, 0.2328767123287671, 0.2328767123287671, 0.2328767123287671, 0.2328767123287671, 0.2328767123287671, 0.2328767123287671, 0.2328767123287671, 0.2328767123287671, 0.2328767123287671, 0.2328767123287671, 0.2328767123287671, 0.2356164383561644, 0.2328767123287671, 0.2328767123287671, 0.2328767123287671, 0.2356164383561644, 0.2410958904109589, 0.24383561643835616, 0.24383561643835616, 0.32054794520547947, 0.3095890410958904, 0.3095890410958904, 0.31232876712328766, 0.3287671232876712, 0.6520547945205479, 0.684931506849315, 0.7095890410958904, 0.736986301369863, 0.736986301369863, 0.7589041095890411, 0.7671232876712328, 0.7780821917808219, 0.7863013698630137, 0.8054794520547945, 0.9397260273972603, 0.8136986301369863, 0.7917808219178082, 0.7808219178082192, 0.7726027397260274, 0.7643835616438356, 0.7561643835616438, 0.736986301369863, 0.7342465753424657, 0.6958904109589041, 0.663013698630137, 0.6383561643835617, 0.4383561643835616, 0.3589041095890411, 0.35342465753424657, 0.3315068493150685, 0.3150684931506849, 0.29863013698630136, 0.2958904109589041, 0.2876712328767123, 0.2876712328767123, 0.2684931506849315, 0.26301369863013696, 0.2547945205479452, 0.24383561643835616, 0.2465753424657534, 0.2465753424657534, 0.24383561643835616, 0.2410958904109589, 0.9095890410958904, 0.8602739726027397, 0.25205479452054796, 0.936986301369863, 0.23013698630136986, 0.2273972602739726, 0.2219178082191781, 0.21095890410958903, 0.20821917808219179, 0.20821917808219179, 0.20821917808219179, 0.21095890410958903, 0.20821917808219179, 0.20821917808219179, 0.21095890410958903, 0.2136986301369863, 0.2136986301369863, 0.21643835616438356, 0.21643835616438356, 0.2191780821917808, 0.2191780821917808, 0.2191780821917808, 0.2191780821917808, 0.2191780821917808, 0.2191780821917808, 0.2191780821917808, 0.2191780821917808, 0.2219178082191781, 0.2219178082191781, 0.22465753424657534, 0.22465753424657534, 0.2219178082191781, 0.22465753424657534, 0.22465753424657534, 0.2356164383561644, 0.24383561643835616, 0.2493150684931507, 0.2547945205479452, 0.2547945205479452, 0.25753424657534246, 0.25753424657534246, 0.2602739726027397, 0.26301369863013696, 0.26301369863013696, 0.26575342465753427, 0.273972602739726, 0.31232876712328766], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Mntp.gap.json b/pfam_gap_rates/Mntp.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e00f7a715e813e0be1b7b0fc75c96da7f065c3d1
--- /dev/null
+++ b/pfam_gap_rates/Mntp.gap.json
@@ -0,0 +1 @@
+{"family": "Mntp", "n_seqs": 1157, "length": 183, "gap_rates": [0.7061365600691444, 0.5635263612791702, 0.47796024200518583, 0.4364736387208297, 0.41659464131374246, 0.3975799481417459, 0.3941227312013829, 0.38720829732065687, 0.3828867761452031, 0.3794295592048401, 0.37510803802938636, 0.3707865168539326, 0.36646499567847884, 0.3656006914433881, 0.3647363872082973, 0.36387208297320656, 0.36387208297320656, 0.36387208297320656, 0.36387208297320656, 0.3621434745030251, 0.3621434745030251, 0.3621434745030251, 0.3595505617977528, 0.35782195332757133, 0.34917891097666376, 0.34053586862575624, 0.3353500432152118, 0.33362143474503025, 0.33016421780466726, 0.33016421780466726, 0.3292999135695765, 0.32843560933448573, 0.32843560933448573, 0.32843560933448573, 0.32843560933448573, 0.3267070008643042, 0.9351771823681936, 0.32152117545375974, 0.31201382886776147, 0.30682800345721695, 0.2964563526361279, 0.28867761452031115, 0.2817631806395851, 0.28003457216940364, 0.28003457216940364, 0.28003457216940364, 0.2791702679343129, 0.2783059636992221, 0.27744165946413135, 0.27744165946413135, 0.2748487467588591, 0.2731201382886776, 0.2722558340535869, 0.26879861711322384, 0.26793431287813313, 0.2662057044079516, 0.26707000864304237, 0.2662057044079516, 0.26534140017286084, 0.27052722558340536, 0.2696629213483146, 0.27052722558340536, 0.2627484874675886, 0.25237683664649957, 0.24546240276577355, 0.24200518582541056, 0.24891961970613655, 0.2480553154710458, 0.2662057044079516, 0.4978392394122731, 0.8029386343993086, 0.8470181503889369, 0.867761452031115, 0.881590319792567, 0.8893690579083837, 0.8962834917891098, 0.9075194468452895, 0.9152981849611063, 0.9204840103716508, 0.9282627484874676, 0.9360414866032843, 0.9429559204840103, 0.9455488331892826, 0.9412273120138289, 0.9351771823681936, 0.9239412273120138, 0.9187554019014693, 0.9135695764909249, 0.902333621434745, 0.8928262748487468, 0.88504753673293, 0.8755401901469317, 0.8582541054451167, 0.8340535868625756, 0.7502160760587727, 0.4062229904926534, 0.2783059636992221, 0.22990492653414002, 0.14261019878997408, 0.07865168539325842, 0.04753673292999136, 0.024200518582541054, 0.013828867761452032, 0.00950734658599827, 0.00950734658599827, 0.00864304235090752, 0.00950734658599827, 0.007778738115816767, 0.007778738115816767, 0.007778738115816767, 0.006914433880726016, 0.006914433880726016, 0.007778738115816767, 0.006914433880726016, 0.006050129645635264, 0.006050129645635264, 0.006050129645635264, 0.006050129645635264, 0.006050129645635264, 0.006050129645635264, 0.006050129645635264, 0.006050129645635264, 0.006914433880726016, 0.006914433880726016, 0.9377700950734659, 0.006914433880726016, 0.006914433880726016, 0.9334485738980121, 0.010371650821089023, 0.00950734658599827, 0.9265341400172861, 0.00864304235090752, 0.00864304235090752, 0.006914433880726016, 0.006050129645635264, 0.006914433880726016, 0.006050129645635264, 0.006914433880726016, 0.007778738115816767, 0.007778738115816767, 0.006914433880726016, 0.006914433880726016, 0.006914433880726016, 0.010371650821089023, 0.010371650821089023, 0.00864304235090752, 0.005185825410544511, 0.005185825410544511, 0.006050129645635264, 0.006050129645635264, 0.006050129645635264, 0.006050129645635264, 0.006914433880726016, 0.006914433880726016, 0.006914433880726016, 0.006914433880726016, 0.00864304235090752, 0.00950734658599827, 0.9204840103716508, 0.7813310285220397, 0.01296456352636128, 0.011235955056179775, 0.012100259291270527, 0.9394987035436474, 0.015557476231633534, 0.013828867761452032, 0.013828867761452032, 0.01296456352636128, 0.012100259291270527, 0.012100259291270527, 0.012100259291270527, 0.012100259291270527, 0.012100259291270527, 0.012100259291270527, 0.012100259291270527, 0.012100259291270527, 0.012100259291270527, 0.01296456352636128, 0.013828867761452032, 0.02592912705272256, 0.2497839239412273, 0.3388072601555748, 0.41832324978392393], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/MobB.gap.json b/pfam_gap_rates/MobB.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b9cccabf38f5214344ea56cfd8f123da0685d53a
--- /dev/null
+++ b/pfam_gap_rates/MobB.gap.json
@@ -0,0 +1 @@
+{"family": "MobB", "n_seqs": 644, "length": 138, "gap_rates": [0.36490683229813664, 0.07608695652173914, 0.03881987577639751, 0.031055900621118012, 0.031055900621118012, 0.024844720496894408, 0.023291925465838508, 0.023291925465838508, 0.023291925465838508, 0.023291925465838508, 0.023291925465838508, 0.023291925465838508, 0.023291925465838508, 0.023291925465838508, 0.021739130434782608, 0.015527950310559006, 0.015527950310559006, 0.015527950310559006, 0.015527950310559006, 0.017080745341614908, 0.017080745341614908, 0.017080745341614908, 0.015527950310559006, 0.017080745341614908, 0.023291925465838508, 0.034161490683229816, 0.021739130434782608, 0.043478260869565216, 0.020186335403726708, 0.017080745341614908, 0.015527950310559006, 0.015527950310559006, 0.015527950310559006, 0.015527950310559006, 0.015527950310559006, 0.018633540372670808, 0.018633540372670808, 0.021739130434782608, 0.023291925465838508, 0.024844720496894408, 0.029503105590062112, 0.9192546583850931, 0.029503105590062112, 0.031055900621118012, 0.026397515527950312, 0.017080745341614908, 0.015527950310559006, 0.017080745341614908, 0.012422360248447204, 0.012422360248447204, 0.012422360248447204, 0.012422360248447204, 0.012422360248447204, 0.013975155279503106, 0.013975155279503106, 0.015527950310559006, 0.023291925465838508, 0.017080745341614908, 0.021739130434782608, 0.037267080745341616, 0.018633540372670808, 0.010869565217391304, 0.013975155279503106, 0.015527950310559006, 0.010869565217391304, 0.012422360248447204, 0.012422360248447204, 0.015527950310559006, 0.012422360248447204, 0.010869565217391304, 0.015527950310559006, 0.017080745341614908, 0.017080745341614908, 0.013975155279503106, 0.15683229813664595, 0.6475155279503105, 0.24378881987577639, 0.24378881987577639, 0.40683229813664595, 0.08540372670807453, 0.034161490683229816, 0.021739130434782608, 0.020186335403726708, 0.017080745341614908, 0.015527950310559006, 0.015527950310559006, 0.015527950310559006, 0.017080745341614908, 0.017080745341614908, 0.015527950310559006, 0.8136645962732919, 0.06987577639751552, 0.018633540372670808, 0.7701863354037267, 0.7313664596273292, 0.013975155279503106, 0.013975155279503106, 0.013975155279503106, 0.013975155279503106, 0.013975155279503106, 0.013975155279503106, 0.013975155279503106, 0.013975155279503106, 0.015527950310559006, 0.017080745341614908, 0.020186335403726708, 0.021739130434782608, 0.026397515527950312, 0.027950310559006212, 0.03260869565217391, 0.034161490683229816, 0.034161490683229816, 0.034161490683229816, 0.04192546583850932, 0.05434782608695652, 0.06521739130434782, 0.07142857142857142, 0.08850931677018634, 0.11180124223602485, 0.12577639751552794, 0.12111801242236025, 0.21428571428571427, 0.19254658385093168, 0.20341614906832298, 0.37577639751552794, 0.34316770186335405, 0.7267080745341615, 0.296583850931677, 0.2375776397515528, 0.23136645962732919, 0.2406832298136646, 0.24378881987577639, 0.2453416149068323, 0.2515527950310559, 0.265527950310559, 0.2795031055900621, 0.3307453416149068, 0.44565217391304346], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Molydop_binding.gap.json b/pfam_gap_rates/Molydop_binding.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..76a3466017d9da4178e7d20908c8967e64aaf92d
--- /dev/null
+++ b/pfam_gap_rates/Molydop_binding.gap.json
@@ -0,0 +1 @@
+{"family": "Molydop_binding", "n_seqs": 4750, "length": 129, "gap_rates": [0.45221052631578945, 0.24336842105263157, 0.18652631578947368, 0.14568421052631578, 0.1383157894736842, 0.1311578947368421, 0.12610526315789475, 0.12463157894736843, 0.12252631578947368, 0.12084210526315789, 0.11621052631578947, 0.10947368421052632, 0.10736842105263159, 0.10610526315789473, 0.1008421052631579, 0.09663157894736842, 0.9170526315789473, 0.09263157894736843, 0.08736842105263158, 0.08421052631578947, 0.07978947368421052, 0.07705263157894737, 0.07747368421052632, 0.06968421052631579, 0.06315789473684211, 0.056842105263157895, 0.05221052631578947, 0.059789473684210524, 0.03873684210526316, 0.06231578947368421, 0.484, 0.37894736842105264, 0.022105263157894735, 0.004842105263157895, 0.004421052631578947, 0.003368421052631579, 0.003157894736842105, 0.0029473684210526317, 0.003157894736842105, 0.0035789473684210526, 0.0035789473684210526, 0.0035789473684210526, 0.003368421052631579, 0.0029473684210526317, 0.004210526315789474, 0.007789473684210527, 0.007789473684210527, 0.0054736842105263155, 0.003789473684210526, 0.003368421052631579, 0.001894736842105263, 0.0016842105263157896, 0.0029473684210526317, 0.002105263157894737, 0.001894736842105263, 0.0029473684210526317, 0.0029473684210526317, 0.004210526315789474, 0.004842105263157895, 0.8949473684210526, 0.00568421052631579, 0.009473684210526316, 0.009894736842105263, 0.009894736842105263, 0.009473684210526316, 0.007368421052631579, 0.9421052631578948, 0.9357894736842105, 0.008210526315789474, 0.008, 0.007789473684210527, 0.007789473684210527, 0.051789473684210524, 0.008210526315789474, 0.008, 0.009473684210526316, 0.010947368421052631, 0.011789473684210527, 0.012210526315789474, 0.013894736842105264, 0.014526315789473684, 0.016, 0.018105263157894735, 0.017894736842105262, 0.019578947368421053, 0.08926315789473684, 0.09410526315789473, 0.6077894736842105, 0.6536842105263158, 0.7061052631578948, 0.7671578947368421, 0.8823157894736842, 0.9303157894736842, 0.9229473684210526, 0.7945263157894736, 0.7267368421052631, 0.6770526315789474, 0.6330526315789474, 0.5412631578947369, 0.456, 0.4726315789473684, 0.4612631578947368, 0.44, 0.3985263157894737, 0.21221052631578946, 0.20673684210526316, 0.12652631578947368, 0.11347368421052631, 0.11557894736842106, 0.11873684210526315, 0.1248421052631579, 0.7972631578947369, 0.1616842105263158, 0.15621052631578947, 0.16252631578947369, 0.1694736842105263, 0.1743157894736842, 0.18168421052631578, 0.19073684210526315, 0.20378947368421052, 0.2265263157894737, 0.24189473684210527, 0.26526315789473687, 0.29178947368421054, 0.31494736842105264, 0.36905263157894735, 0.4149473684210526, 0.5452631578947369, 0.8294736842105264], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/MreD.gap.json b/pfam_gap_rates/MreD.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..8c1ee9411041c9dfc41f0433caaedea72a467acf
--- /dev/null
+++ b/pfam_gap_rates/MreD.gap.json
@@ -0,0 +1 @@
+{"family": "MreD", "n_seqs": 1043, "length": 172, "gap_rates": [0.8859060402684564, 0.8274209012464045, 0.7583892617449665, 0.6548418024928092, 0.5493767976989453, 0.43815915627996166, 0.32406519654841803, 0.24256951102588686, 0.1975071907957814, 0.14669223394055608, 0.13998082454458294, 0.4448705656759348, 0.12559923298178333, 0.09491850431447747, 0.06903163950143816, 0.062320230105465, 0.05752636625119847, 0.05177372962607862, 0.04985618408437201, 0.05081495685522531, 0.053691275167785234, 0.6347075743048898, 0.052732502396931925, 0.06040268456375839, 0.05752636625119847, 0.06519654841802493, 0.07190795781399809, 0.045062320230105465, 0.8542665388302972, 0.9357622243528284, 0.9443911792905082, 0.9079578139980825, 0.7229146692233941, 0.037392138063279005, 0.031639501438159155, 0.023969319271332695, 0.02109300095877277, 0.01725790987535954, 0.01821668264621285, 0.011505273250239693, 0.010546500479386385, 0.007670182166826462, 0.00862895493767977, 0.007670182166826462, 0.007670182166826462, 0.007670182166826462, 0.007670182166826462, 0.00862895493767977, 0.007670182166826462, 0.00862895493767977, 0.00862895493767977, 0.00862895493767977, 0.007670182166826462, 0.006711409395973154, 0.007670182166826462, 0.006711409395973154, 0.006711409395973154, 0.006711409395973154, 0.005752636625119847, 0.006711409395973154, 0.004793863854266539, 0.004793863854266539, 0.003835091083413231, 0.003835091083413231, 0.004793863854266539, 0.003835091083413231, 0.003835091083413231, 0.003835091083413231, 0.0028763183125599234, 0.0028763183125599234, 0.0028763183125599234, 0.004793863854266539, 0.026845637583892617, 0.003835091083413231, 0.006711409395973154, 0.005752636625119847, 0.006711409395973154, 0.007670182166826462, 0.003835091083413231, 0.003835091083413231, 0.003835091083413231, 0.0028763183125599234, 0.0028763183125599234, 0.0028763183125599234, 0.005752636625119847, 0.005752636625119847, 0.004793863854266539, 0.004793863854266539, 0.0028763183125599234, 0.004793863854266539, 0.005752636625119847, 0.006711409395973154, 0.005752636625119847, 0.005752636625119847, 0.007670182166826462, 0.010546500479386385, 0.01725790987535954, 0.016299137104506232, 0.01725790987535954, 0.016299137104506232, 0.3710450623202301, 0.3144774688398849, 0.716203259827421, 0.87535953978907, 0.6558005752636625, 0.3068072866730585, 0.2962607861936721, 0.029721955896452542, 0.026845637583892617, 0.023969319271332695, 0.023969319271332695, 0.023010546500479387, 0.02205177372962608, 0.023969319271332695, 0.02588686481303931, 0.029721955896452542, 0.8657718120805369, 0.8897411313518696, 0.8331735378715245, 0.032598274209012464, 0.0364333652924257, 0.032598274209012464, 0.9280920421860019, 0.1965484180249281, 0.08245445829338446, 0.05177372962607862, 0.05177372962607862, 0.045062320230105465, 0.040268456375838924, 0.046021093000958774, 0.045062320230105465, 0.04314477468839885, 0.05177372962607862, 0.05656759348034516, 0.06519654841802493, 0.06807286673058485, 0.07190795781399809, 0.4247363374880153, 0.19463087248322147, 0.12943432406519656, 0.11025886864813039, 0.09971236816874401, 0.14956855225311602, 0.13135186960690318, 0.10642377756471716, 0.11505273250239693, 0.42953020134228187, 0.336529242569511, 0.15819750719079578, 0.17545541706615533, 0.12176414189837009, 0.947267497603068, 0.1112176414189837, 0.10450623202301054, 0.09971236816874401, 0.10354745925215723, 0.09395973154362416, 0.0977948226270374, 0.10546500479386385, 0.10930009587727708, 0.12176414189837009, 0.1342281879194631, 0.14477468839884947, 0.16586768935762225, 0.18312559923298177, 0.21572387344199426, 0.28954937679769893, 0.3451581975071908, 0.3969319271332694, 0.47459252157238735, 0.6356663470757431, 0.8149568552253116], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Mrr_cat.gap.json b/pfam_gap_rates/Mrr_cat.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b12b91bb5090081084559c7f56b15f9f90e79ec5
--- /dev/null
+++ b/pfam_gap_rates/Mrr_cat.gap.json
@@ -0,0 +1 @@
+{"family": "Mrr_cat", "n_seqs": 1369, "length": 144, "gap_rates": [0.8802045288531775, 0.618699780861943, 0.46822498173849525, 0.393718042366691, 0.2987582176771366, 0.19211102994886778, 0.15997078159240322, 0.12783053323593865, 0.1154127100073046, 0.1110299488677867, 0.10372534696859022, 0.09788166544923302, 0.09642074506939372, 0.09495982468955443, 0.09422936449963477, 0.09130752373995617, 0.08911614317019723, 0.08765522279035792, 0.08546384222059898, 0.08473338203067933, 0.07962016070124178, 0.07742878013148284, 0.07888970051132213, 0.7297297297297297, 0.8597516435354273, 0.9035792549306063, 0.7669831994156319, 0.6946676406135865, 0.4346238130021914, 0.10153396639883126, 0.08473338203067933, 0.06939371804236669, 0.06281957633308985, 0.0679327976625274, 0.09569028487947406, 0.07012417823228634, 0.056245434623813005, 0.04090577063550037, 0.03360116873630387, 0.03287070854638422, 0.029948867786705625, 0.030679327976625273, 0.027757487216946677, 0.028487947406866325, 0.9152666179693206, 0.8845872899926954, 0.028487947406866325, 0.03287070854638422, 0.04967129291453616, 0.14317019722425128, 0.1468224981738495, 0.4302410518626735, 0.3162892622352082, 0.3929875821767714, 0.052593133674214754, 0.860482103725347, 0.9371804236669101, 0.9466764061358656, 0.9181884587289992, 0.8035062089116143, 0.031409788166544925, 0.02191380569758948, 0.02191380569758948, 0.021183345507669833, 0.020452885317750184, 0.021183345507669833, 0.021183345507669833, 0.019722425127830533, 0.07888970051132213, 0.9152666179693206, 0.8736303871439006, 0.045288531775018265, 0.8246895544192842, 0.9211102994886778, 0.7443389335281227, 0.02337472607742878, 0.9386413440467495, 0.02337472607742878, 0.028487947406866325, 0.028487947406866325, 0.029218407596785977, 0.027757487216946677, 0.02702702702702703, 0.02556610664718773, 0.02702702702702703, 0.029218407596785977, 0.029218407596785977, 0.029218407596785977, 0.031409788166544925, 0.03360116873630387, 0.036523009495982466, 0.03725346968590212, 0.04163623082542001, 0.8780131482834186, 0.9181884587289992, 0.9379108838568299, 0.9452154857560263, 0.9335281227173119, 0.8933528122717312, 0.829072315558802, 0.04309715120525932, 0.17531044558071585, 0.10372534696859022, 0.045288531775018265, 0.04309715120525932, 0.04309715120525932, 0.04382761139517896, 0.04455807158509861, 0.04455807158509861, 0.04674945215485756, 0.04674945215485756, 0.04821037253469686, 0.04821037253469686, 0.04821037253469686, 0.050401753104455806, 0.050401753104455806, 0.05186267348429511, 0.05551497443389335, 0.056245434623813005, 0.05843681519357195, 0.0606281957633309, 0.07012417823228634, 0.08035062089116143, 0.09569028487947406, 0.9101533966398831, 0.587289992695398, 0.15047479912344777, 0.8363769174579986, 0.15339663988312638, 0.9444850255661067, 0.9247626004382761, 0.15777940102264426, 0.16216216216216217, 0.1658144631117604, 0.18845872899926955, 0.22425127830533237, 0.24616508400292184, 0.26223520818115414, 0.266617969320672, 0.2753834915997078, 0.30533235938641345, 0.3557341124908692, 0.44485025566106645, 0.6902848794740687], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Mrr_cat_2.gap.json b/pfam_gap_rates/Mrr_cat_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..2dd01846b54fdcd5f86f2ecc29b0cabbbe5ffdb5
--- /dev/null
+++ b/pfam_gap_rates/Mrr_cat_2.gap.json
@@ -0,0 +1 @@
+{"family": "Mrr_cat_2", "n_seqs": 106, "length": 143, "gap_rates": [0.7169811320754716, 0.27358490566037735, 0.22641509433962265, 0.19811320754716982, 0.18867924528301888, 0.1792452830188679, 0.16981132075471697, 0.12264150943396226, 0.11320754716981132, 0.11320754716981132, 0.10377358490566038, 0.09433962264150944, 0.09433962264150944, 0.09433962264150944, 0.09433962264150944, 0.09433962264150944, 0.09433962264150944, 0.09433962264150944, 0.08490566037735849, 0.09433962264150944, 0.24528301886792453, 0.2358490566037736, 0.8490566037735849, 0.9339622641509434, 0.8301886792452831, 0.09433962264150944, 0.2358490566037736, 0.19811320754716982, 0.11320754716981132, 0.9339622641509434, 0.9245283018867925, 0.05660377358490566, 0.03773584905660377, 0.03773584905660377, 0.03773584905660377, 0.03773584905660377, 0.03773584905660377, 0.03773584905660377, 0.03773584905660377, 0.04716981132075472, 0.04716981132075472, 0.04716981132075472, 0.04716981132075472, 0.9245283018867925, 0.46226415094339623, 0.09433962264150944, 0.04716981132075472, 0.04716981132075472, 0.05660377358490566, 0.05660377358490566, 0.05660377358490566, 0.0660377358490566, 0.05660377358490566, 0.04716981132075472, 0.05660377358490566, 0.05660377358490566, 0.07547169811320754, 0.05660377358490566, 0.05660377358490566, 0.16037735849056603, 0.16037735849056603, 0.0660377358490566, 0.05660377358490566, 0.05660377358490566, 0.05660377358490566, 0.05660377358490566, 0.05660377358490566, 0.05660377358490566, 0.05660377358490566, 0.05660377358490566, 0.05660377358490566, 0.05660377358490566, 0.05660377358490566, 0.04716981132075472, 0.04716981132075472, 0.04716981132075472, 0.04716981132075472, 0.07547169811320754, 0.08490566037735849, 0.6886792452830188, 0.7169811320754716, 0.7830188679245284, 0.8113207547169812, 0.9339622641509434, 0.9150943396226415, 0.7924528301886793, 0.7547169811320755, 0.7075471698113207, 0.6792452830188679, 0.0660377358490566, 0.07547169811320754, 0.0660377358490566, 0.07547169811320754, 0.0660377358490566, 0.0660377358490566, 0.07547169811320754, 0.07547169811320754, 0.0660377358490566, 0.05660377358490566, 0.05660377358490566, 0.05660377358490566, 0.08490566037735849, 0.8962264150943396, 0.07547169811320754, 0.07547169811320754, 0.09433962264150944, 0.11320754716981132, 0.12264150943396226, 0.12264150943396226, 0.12264150943396226, 0.12264150943396226, 0.1509433962264151, 0.16981132075471697, 0.16037735849056603, 0.16037735849056603, 0.1792452830188679, 0.20754716981132076, 0.20754716981132076, 0.16981132075471697, 0.16981132075471697, 0.16981132075471697, 0.1792452830188679, 0.1792452830188679, 0.1792452830188679, 0.1792452830188679, 0.1792452830188679, 0.1792452830188679, 0.18867924528301888, 0.19811320754716982, 0.19811320754716982, 0.20754716981132076, 0.20754716981132076, 0.20754716981132076, 0.20754716981132076, 0.20754716981132076, 0.2169811320754717, 0.2358490566037736, 0.25471698113207547, 0.2830188679245283, 0.3584905660377358, 0.5283018867924528, 0.5849056603773585, 0.9150943396226415], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Multi-haem_cyto.gap.json b/pfam_gap_rates/Multi-haem_cyto.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..07c37e57ad75b57da6a672ba4fa340e60351831b
--- /dev/null
+++ b/pfam_gap_rates/Multi-haem_cyto.gap.json
@@ -0,0 +1 @@
+{"family": "Multi-haem_cyto", "n_seqs": 192, "length": 293, "gap_rates": [0.90625, 0.8020833333333334, 0.7552083333333334, 0.7395833333333334, 0.71875, 0.7135416666666666, 0.7083333333333334, 0.703125, 0.7083333333333334, 0.7239583333333334, 0.7239583333333334, 0.7447916666666666, 0.7395833333333334, 0.7291666666666666, 0.9375, 0.734375, 0.71875, 0.6979166666666666, 0.6770833333333334, 0.6666666666666666, 0.6614583333333334, 0.65625, 0.65625, 0.6614583333333334, 0.6666666666666666, 0.6614583333333334, 0.6614583333333334, 0.65625, 0.65625, 0.65625, 0.65625, 0.65625, 0.65625, 0.65625, 0.65625, 0.65625, 0.671875, 0.671875, 0.671875, 0.671875, 0.6770833333333334, 0.6875, 0.6875, 0.6875, 0.6770833333333334, 0.6822916666666666, 0.6770833333333334, 0.6875, 0.6875, 0.78125, 0.7552083333333334, 0.734375, 0.734375, 0.7552083333333334, 0.734375, 0.7395833333333334, 0.9427083333333334, 0.9427083333333334, 0.8697916666666666, 0.7395833333333334, 0.7395833333333334, 0.7395833333333334, 0.6875, 0.6822916666666666, 0.9427083333333334, 0.9427083333333334, 0.6822916666666666, 0.6770833333333334, 0.671875, 0.6666666666666666, 0.6510416666666666, 0.6510416666666666, 0.6510416666666666, 0.65625, 0.65625, 0.65625, 0.65625, 0.65625, 0.6510416666666666, 0.6510416666666666, 0.6510416666666666, 0.6510416666666666, 0.6510416666666666, 0.65625, 0.6614583333333334, 0.6510416666666666, 0.65625, 0.6875, 0.6614583333333334, 0.6458333333333334, 0.6510416666666666, 0.6510416666666666, 0.640625, 0.640625, 0.640625, 0.640625, 0.640625, 0.640625, 0.640625, 0.6302083333333334, 0.5572916666666666, 0.3958333333333333, 0.16666666666666666, 0.16145833333333334, 0.16145833333333334, 0.16145833333333334, 0.16145833333333334, 0.16145833333333334, 0.16145833333333334, 0.16145833333333334, 0.16145833333333334, 0.16145833333333334, 0.16145833333333334, 0.16145833333333334, 0.16145833333333334, 0.16145833333333334, 0.16145833333333334, 0.16145833333333334, 0.16145833333333334, 0.16145833333333334, 0.16145833333333334, 0.16145833333333334, 0.16145833333333334, 0.16145833333333334, 0.16145833333333334, 0.16145833333333334, 0.16145833333333334, 0.16145833333333334, 0.16145833333333334, 0.16145833333333334, 0.16145833333333334, 0.16145833333333334, 0.16666666666666666, 0.16666666666666666, 0.16666666666666666, 0.16666666666666666, 0.16666666666666666, 0.16666666666666666, 0.16666666666666666, 0.16666666666666666, 0.16666666666666666, 0.16666666666666666, 0.16666666666666666, 0.16666666666666666, 0.16666666666666666, 0.16666666666666666, 0.16666666666666666, 0.16666666666666666, 0.16666666666666666, 0.16666666666666666, 0.17708333333333334, 0.18229166666666666, 0.21875, 0.25, 0.2708333333333333, 0.2916666666666667, 0.296875, 0.28125, 0.9427083333333334, 0.2916666666666667, 0.3229166666666667, 0.3958333333333333, 0.3802083333333333, 0.3802083333333333, 0.3802083333333333, 0.3958333333333333, 0.3385416666666667, 0.3020833333333333, 0.2760416666666667, 0.21354166666666666, 0.19791666666666666, 0.17708333333333334, 0.17708333333333334, 0.17708333333333334, 0.17708333333333334, 0.17708333333333334, 0.17708333333333334, 0.17708333333333334, 0.17708333333333334, 0.17708333333333334, 0.17708333333333334, 0.22916666666666666, 0.9479166666666666, 0.4322916666666667, 0.921875, 0.4166666666666667, 0.3802083333333333, 0.9375, 0.4114583333333333, 0.8958333333333334, 0.8802083333333334, 0.4583333333333333, 0.8541666666666666, 0.8541666666666666, 0.4166666666666667, 0.40625, 0.4114583333333333, 0.4270833333333333, 0.4114583333333333, 0.4375, 0.4375, 0.4375, 0.4479166666666667, 0.4479166666666667, 0.4479166666666667, 0.4479166666666667, 0.4635416666666667, 0.8958333333333334, 0.515625, 0.9166666666666666, 0.859375, 0.5520833333333334, 0.546875, 0.5416666666666666, 0.5052083333333334, 0.5052083333333334, 0.515625, 0.5052083333333334, 0.4947916666666667, 0.8802083333333334, 0.890625, 0.9010416666666666, 0.890625, 0.8697916666666666, 0.4895833333333333, 0.46875, 0.46875, 0.46875, 0.4635416666666667, 0.4270833333333333, 0.4114583333333333, 0.4322916666666667, 0.5104166666666666, 0.4479166666666667, 0.453125, 0.4114583333333333, 0.40625, 0.40625, 0.40625, 0.40625, 0.40625, 0.40625, 0.40625, 0.40625, 0.40625, 0.40625, 0.40625, 0.40625, 0.40625, 0.40625, 0.40625, 0.40625, 0.40625, 0.40625, 0.4114583333333333, 0.4166666666666667, 0.4166666666666667, 0.4375, 0.4375, 0.4375, 0.9427083333333334, 0.4375, 0.4479166666666667, 0.453125, 0.453125, 0.453125, 0.453125, 0.453125, 0.9479166666666666, 0.4583333333333333, 0.4583333333333333, 0.4583333333333333, 0.4583333333333333, 0.4583333333333333, 0.4583333333333333, 0.4583333333333333, 0.4583333333333333, 0.4583333333333333, 0.4583333333333333, 0.4635416666666667, 0.4739583333333333, 0.4739583333333333, 0.4739583333333333, 0.4791666666666667, 0.5104166666666666, 0.5885416666666666, 0.796875, 0.8541666666666666, 0.8802083333333334, 0.890625, 0.9010416666666666, 0.90625, 0.9114583333333334], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Mur_ligase.gap.json b/pfam_gap_rates/Mur_ligase.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f102cd6c0e4f35fe0496bf72afda38befb2b64b5
--- /dev/null
+++ b/pfam_gap_rates/Mur_ligase.gap.json
@@ -0,0 +1 @@
+{"family": "Mur_ligase", "n_seqs": 5000, "length": 106, "gap_rates": [0.6912, 0.2772, 0.1992, 0.1354, 0.0628, 0.0462, 0.0286, 0.022, 0.0206, 0.0196, 0.0186, 0.0092, 0.0082, 0.0058, 0.0048, 0.0042, 0.0036, 0.003, 0.0028, 0.0028, 0.0024, 0.0022, 0.0048, 0.0038, 0.005, 0.0202, 0.0018, 0.0012, 0.0012, 0.001, 0.0008, 0.0008, 0.0008, 0.0018, 0.5776, 0.581, 0.857, 0.5836, 0.5784, 0.5754, 0.002, 0.0032, 0.0028, 0.0026, 0.0032, 0.0032, 0.0038, 0.0034, 0.004, 0.0038, 0.0044, 0.0052, 0.0096, 0.013, 0.0192, 0.538, 0.5244, 0.5554, 0.5662, 0.6028, 0.9242, 0.9454, 0.9398, 0.804, 0.5726, 0.5594, 0.5482, 0.5382, 0.5478, 0.5464, 0.5396, 0.5626, 0.527, 0.5138, 0.4944, 0.4612, 0.937, 0.4018, 0.3582, 0.2752, 0.2348, 0.1862, 0.1538, 0.1486, 0.1442, 0.1458, 0.1486, 0.149, 0.149, 0.153, 0.1538, 0.1752, 0.174, 0.1606, 0.1632, 0.1652, 0.1674, 0.1722, 0.1796, 0.192, 0.208, 0.2376, 0.2898, 0.3816, 0.5322, 0.7838], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/MutH.gap.json b/pfam_gap_rates/MutH.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..4f76467361f3c14205e7d51f2146d12d197ce357
--- /dev/null
+++ b/pfam_gap_rates/MutH.gap.json
@@ -0,0 +1 @@
+{"family": "MutH", "n_seqs": 143, "length": 107, "gap_rates": [0.1958041958041958, 0.1958041958041958, 0.18181818181818182, 0.18181818181818182, 0.16083916083916083, 0.15384615384615385, 0.14685314685314685, 0.13986013986013987, 0.13986013986013987, 0.11888111888111888, 0.07692307692307693, 0.06993006993006994, 0.06993006993006994, 0.06993006993006994, 0.09090909090909091, 0.06293706293706294, 0.02097902097902098, 0.02097902097902098, 0.02097902097902098, 0.02097902097902098, 0.02097902097902098, 0.02097902097902098, 0.02097902097902098, 0.02097902097902098, 0.02097902097902098, 0.02097902097902098, 0.013986013986013986, 0.013986013986013986, 0.7202797202797203, 0.6643356643356644, 0.6573426573426573, 0.6643356643356644, 0.9440559440559441, 0.916083916083916, 0.02097902097902098, 0.02097902097902098, 0.02097902097902098, 0.02097902097902098, 0.02097902097902098, 0.02097902097902098, 0.02097902097902098, 0.013986013986013986, 0.013986013986013986, 0.013986013986013986, 0.013986013986013986, 0.013986013986013986, 0.013986013986013986, 0.013986013986013986, 0.013986013986013986, 0.02097902097902098, 0.013986013986013986, 0.04195804195804196, 0.027972027972027972, 0.027972027972027972, 0.02097902097902098, 0.02097902097902098, 0.02097902097902098, 0.027972027972027972, 0.027972027972027972, 0.027972027972027972, 0.027972027972027972, 0.027972027972027972, 0.027972027972027972, 0.027972027972027972, 0.027972027972027972, 0.027972027972027972, 0.027972027972027972, 0.027972027972027972, 0.027972027972027972, 0.02097902097902098, 0.027972027972027972, 0.02097902097902098, 0.02097902097902098, 0.02097902097902098, 0.027972027972027972, 0.03496503496503497, 0.06993006993006994, 0.06993006993006994, 0.055944055944055944, 0.06993006993006994, 0.06993006993006994, 0.07692307692307693, 0.06993006993006994, 0.06993006993006994, 0.07692307692307693, 0.07692307692307693, 0.07692307692307693, 0.07692307692307693, 0.07692307692307693, 0.07692307692307693, 0.07692307692307693, 0.08391608391608392, 0.08391608391608392, 0.08391608391608392, 0.08391608391608392, 0.9370629370629371, 0.9090909090909091, 0.0979020979020979, 0.11188811188811189, 0.1258741258741259, 0.14685314685314685, 0.16783216783216784, 0.1958041958041958, 0.20279720279720279, 0.21678321678321677, 0.22377622377622378, 0.23776223776223776], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/MutL_C.gap.json b/pfam_gap_rates/MutL_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..47ff5f5c3919e2ef8f21a3dc8cc951a2399dd283
--- /dev/null
+++ b/pfam_gap_rates/MutL_C.gap.json
@@ -0,0 +1 @@
+{"family": "MutL_C", "n_seqs": 2115, "length": 169, "gap_rates": [0.8174940898345153, 0.7725768321513002, 0.6709219858156028, 0.4803782505910166, 0.2756501182033097, 0.17494089834515367, 0.14609929078014183, 0.09408983451536643, 0.0851063829787234, 0.08037825059101655, 0.07565011820330969, 0.06950354609929078, 0.06761229314420804, 0.06666666666666667, 0.0657210401891253, 0.06288416075650118, 0.05626477541371158, 0.048699763593380616, 0.9234042553191489, 0.933806146572104, 0.948936170212766, 0.9451536643026005, 0.9309692671394799, 0.9163120567375886, 0.037825059101654845, 0.027895981087470448, 0.020803782505910164, 0.9479905437352246, 0.01702127659574468, 0.01607565011820331, 0.016548463356973995, 0.015130023640661938, 0.015130023640661938, 0.015130023640661938, 0.015130023640661938, 0.015130023640661938, 0.015130023640661938, 0.01607565011820331, 0.015602836879432624, 0.015130023640661938, 0.015130023640661938, 0.014184397163120567, 0.014184397163120567, 0.014184397163120567, 0.013711583924349883, 0.013711583924349883, 0.013711583924349883, 0.019858156028368795, 0.018912529550827423, 0.018912529550827423, 0.02269503546099291, 0.03309692671394799, 0.27470449172576833, 0.31347517730496455, 0.9361702127659575, 0.9432624113475178, 0.9073286052009456, 0.2723404255319149, 0.0491725768321513, 0.042080378250591015, 0.03971631205673759, 0.027423167848699765, 0.027423167848699765, 0.027423167848699765, 0.02458628841607565, 0.024113475177304965, 0.026004728132387706, 0.027895981087470448, 0.02695035460992908, 0.027895981087470448, 0.03546099290780142, 0.03640661938534279, 0.03593380614657211, 0.03735224586288416, 0.03971631205673759, 0.03971631205673759, 0.034988179669030735, 0.03687943262411347, 0.03404255319148936, 0.03309692671394799, 0.032624113475177303, 0.030260047281323876, 0.027895981087470448, 0.02364066193853428, 0.02269503546099291, 0.02269503546099291, 0.023167848699763592, 0.022222222222222223, 0.02269503546099291, 0.025059101654846337, 0.023167848699763592, 0.023167848699763592, 0.024113475177304965, 0.02553191489361702, 0.07281323877068557, 0.8293144208037825, 0.849645390070922, 0.9432624113475178, 0.9342789598108747, 0.8449172576832151, 0.8193853427895981, 0.0657210401891253, 0.050118203309692674, 0.054373522458628844, 0.05106382978723404, 0.050118203309692674, 0.04680851063829787, 0.046335697399527184, 0.046335697399527184, 0.04680851063829787, 0.04775413711583924, 0.0491725768321513, 0.050118203309692674, 0.04964539007092199, 0.04964539007092199, 0.05106382978723404, 0.05390070921985816, 0.05626477541371158, 0.05862884160756501, 0.08037825059101655, 0.10260047281323877, 0.0789598108747045, 0.0690307328605201, 0.06430260047281323, 0.06619385342789598, 0.06619385342789598, 0.06524822695035461, 0.06524822695035461, 0.06666666666666667, 0.07234042553191489, 0.07234042553191489, 0.08416075650118203, 0.0817966903073286, 0.0851063829787234, 0.0884160756501182, 0.0950354609929078, 0.1470449172576832, 0.8520094562647754, 0.9210401891252955, 0.9394799054373523, 0.8950354609929078, 0.6108747044917258, 0.19574468085106383, 0.19952718676122932, 0.8118203309692671, 0.20236406619385341, 0.1475177304964539, 0.1182033096926714, 0.09881796690307329, 0.0983451536643026, 0.0983451536643026, 0.10070921985815603, 0.10118203309692671, 0.10260047281323877, 0.10543735224586288, 0.10591016548463357, 0.10874704491725769, 0.10969267139479906, 0.11347517730496454, 0.11678486997635934, 0.12529550827423167, 0.12907801418439716, 0.13522458628841608, 0.14184397163120568, 0.14940898345153664, 0.1607565011820331, 0.1829787234042553, 0.2515366430260047, 0.3659574468085106], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/MutS_I.gap.json b/pfam_gap_rates/MutS_I.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..7d93c9ffd35f935b0e08c57ca69d6617241ea9cb
--- /dev/null
+++ b/pfam_gap_rates/MutS_I.gap.json
@@ -0,0 +1 @@
+{"family": "MutS_I", "n_seqs": 2696, "length": 130, "gap_rates": [0.3942878338278932, 0.24072700296735905, 0.15393175074183976, 0.12277448071216618, 0.1083086053412463, 0.09903560830860535, 0.09310089020771513, 0.081973293768546, 0.07640949554896143, 0.06973293768545995, 0.061943620178041545, 0.051557863501483676, 0.05192878338278932, 0.0322700296735905, 0.026706231454005934, 0.02559347181008902, 0.024851632047477746, 0.024851632047477746, 0.02410979228486647, 0.022626112759643918, 0.02188427299703264, 0.021513353115727003, 0.018916913946587538, 0.01817507418397626, 0.016320474777448073, 0.016320474777448073, 0.016320474777448073, 0.015207715133531157, 0.014465875370919881, 0.014094955489614243, 0.014094955489614243, 0.013353115727002967, 0.013353115727002967, 0.013353115727002967, 0.013724035608308606, 0.013353115727002967, 0.01298219584569733, 0.013353115727002967, 0.01298219584569733, 0.014094955489614243, 0.013724035608308606, 0.013724035608308606, 0.013724035608308606, 0.014094955489614243, 0.014094955489614243, 0.014094955489614243, 0.17025222551928784, 0.18620178041543026, 0.2470326409495549, 0.9083827893175074, 0.9425074183976261, 0.8805637982195845, 0.23961424332344214, 0.14169139465875372, 0.08160237388724036, 0.037833827893175076, 0.040059347181008904, 0.2704005934718101, 0.8694362017804155, 0.04710682492581603, 0.015578635014836795, 0.012611275964391691, 0.011498516320474777, 0.011498516320474777, 0.01112759643916914, 0.010756676557863502, 0.01112759643916914, 0.01112759643916914, 0.01112759643916914, 0.011869436201780416, 0.011498516320474777, 0.012240356083086053, 0.012240356083086053, 0.012240356083086053, 0.012240356083086053, 0.012611275964391691, 0.01298219584569733, 0.01483679525222552, 0.013724035608308606, 0.014094955489614243, 0.8794510385756676, 0.016320474777448073, 0.017062314540059347, 0.017433234421364987, 0.018916913946587538, 0.020029673590504452, 0.020771513353115726, 0.02188427299703264, 0.022997032640949554, 0.026706231454005934, 0.028560830860534125, 0.06231454005934718, 0.07270029673590504, 0.09458456973293769, 0.09235905044510385, 0.09421364985163205, 0.11832344213649852, 0.6787833827893175, 0.7080860534124629, 0.7911721068249258, 0.8690652818991098, 0.8813056379821959, 0.9198813056379822, 0.9328635014836796, 0.9094955489614244, 0.8753709198813057, 0.8646142433234422, 0.7173590504451038, 0.6910237388724035, 0.6695103857566765, 0.12129080118694362, 0.13056379821958458, 0.06676557863501484, 0.05823442136498516, 0.05341246290801187, 0.05415430267062315, 0.05749258160237389, 0.05823442136498516, 0.061201780415430264, 0.06342729970326409, 0.06528189910979229, 0.06676557863501484, 0.06676557863501484, 0.06787833827893175, 0.07010385756676558, 0.07789317507418397, 0.0897626112759644, 0.11832344213649852, 0.1795252225519288, 0.42136498516320475], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/MutS_III.gap.json b/pfam_gap_rates/MutS_III.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..8efce4a5145eeda0b904fcaca081f35bc9c101b4
--- /dev/null
+++ b/pfam_gap_rates/MutS_III.gap.json
@@ -0,0 +1 @@
+{"family": "MutS_III", "n_seqs": 3310, "length": 409, "gap_rates": [0.4981873111782477, 0.1661631419939577, 0.13081570996978853, 0.09788519637462235, 0.08791540785498489, 0.08489425981873112, 0.08398791540785498, 0.0836858006042296, 0.08398791540785498, 0.09003021148036254, 0.9395770392749244, 0.9483383685800604, 0.9341389728096676, 0.09728096676737161, 0.7755287009063444, 0.17371601208459214, 0.16283987915407855, 0.12054380664652568, 0.8610271903323263, 0.9102719033232628, 0.9422960725075529, 0.9259818731117825, 0.8912386706948641, 0.5628398791540785, 0.09063444108761329, 0.10996978851963746, 0.061933534743202415, 0.045317220543806644, 0.9371601208459215, 0.03141993957703928, 0.030211480362537766, 0.029003021148036254, 0.028700906344410877, 0.027794561933534745, 0.027492447129909364, 0.026586102719033233, 0.028700906344410877, 0.025981873111782478, 0.023564954682779457, 0.023564954682779457, 0.022658610271903322, 0.019637462235649546, 0.019637462235649546, 0.019637462235649546, 0.018731117824773415, 0.017522658610271902, 0.017522658610271902, 0.016918429003021148, 0.01570996978851964, 0.01661631419939577, 0.016314199395770394, 0.01419939577039275, 0.013897280966767372, 0.014501510574018127, 0.01661631419939577, 0.014803625377643504, 0.01540785498489426, 0.014803625377643504, 0.013897280966767372, 0.013595166163141994, 0.01419939577039275, 0.014803625377643504, 0.013293051359516616, 0.013293051359516616, 0.013595166163141994, 0.013897280966767372, 0.014501510574018127, 0.01419939577039275, 0.01570996978851964, 0.01661631419939577, 0.22416918429003022, 0.016918429003021148, 0.05528700906344411, 0.9190332326283988, 0.9006042296072507, 0.0634441087613293, 0.04380664652567976, 0.036858006042296075, 0.09667673716012085, 0.03836858006042296, 0.03172205438066465, 0.027794561933534745, 0.0256797583081571, 0.021148036253776436, 0.022960725075528703, 0.02326283987915408, 0.8939577039274924, 0.02447129909365559, 0.02688821752265861, 0.03262839879154079, 0.030211480362537766, 0.0256797583081571, 0.9386706948640483, 0.9123867069486404, 0.025377643504531724, 0.025075528700906343, 0.025075528700906343, 0.025075528700906343, 0.024773413897280966, 0.024773413897280966, 0.025377643504531724, 0.025981873111782478, 0.03413897280966768, 0.03746223564954683, 0.038066465256797584, 0.06253776435045318, 0.923262839879154, 0.9256797583081571, 0.9371601208459215, 0.9453172205438066, 0.947129909365559, 0.9410876132930514, 0.9305135951661632, 0.9244712990936556, 0.9220543806646526, 0.06858006042296072, 0.09667673716012085, 0.09365558912386707, 0.10241691842900302, 0.09546827794561934, 0.06948640483383686, 0.8845921450151057, 0.8987915407854985, 0.9181268882175226, 0.9338368580060423, 0.9459214501510574, 0.9395770392749244, 0.9253776435045318, 0.9132930513595167, 0.886404833836858, 0.8809667673716012, 0.06525679758308157, 0.08791540785498489, 0.04984894259818731, 0.8719033232628399, 0.8858006042296073, 0.8987915407854985, 0.9314199395770393, 0.9401812688821752, 0.9362537764350454, 0.9060422960725075, 0.8942598187311178, 0.8740181268882176, 0.8688821752265861, 0.04803625377643504, 0.04682779456193353, 0.04954682779456193, 0.04984894259818731, 0.04924471299093656, 0.04894259818731118, 0.06042296072507553, 0.08670694864048338, 0.08217522658610273, 0.09154078549848943, 0.09214501510574018, 0.09395770392749245, 0.09395770392749245, 0.09335347432024169, 0.09848942598187312, 0.12205438066465257, 0.13081570996978853, 0.12658610271903323, 0.14984894259818732, 0.20181268882175227, 0.24984894259818732, 0.10302114803625377, 0.13444108761329304, 0.15226586102719034, 0.19274924471299093, 0.23595166163141995, 0.5546827794561934, 0.6531722054380664, 0.7, 0.7374622356495468, 0.7906344410876133, 0.8199395770392749, 0.8383685800604229, 0.8580060422960725, 0.8700906344410876, 0.8824773413897281, 0.8936555891238671, 0.9, 0.9081570996978852, 0.9175226586102719, 0.9244712990936556, 0.9335347432024169, 0.9425981873111783, 0.9489425981873112, 0.9371601208459215, 0.9305135951661632, 0.9217522658610272, 0.9138972809667674, 0.9042296072507553, 0.897583081570997, 0.8882175226586103, 0.8773413897280967, 0.8634441087613293, 0.8501510574018127, 0.8299093655589124, 0.8036253776435045, 0.7640483383685801, 0.7229607250755287, 0.6770392749244712, 0.6241691842900302, 0.5045317220543807, 0.20785498489425983, 0.1634441087613293, 0.14441087613293052, 0.1299093655589124, 0.08519637462235649, 0.2552870090634441, 0.25770392749244714, 0.25891238670694866, 0.2335347432024169, 0.22900302114803625, 0.20060422960725074, 0.8709969788519637, 0.8915407854984895, 0.8459214501510574, 0.16314199395770393, 0.15438066465256797, 0.15498489425981873, 0.1540785498489426, 0.17220543806646527, 0.2836858006042296, 0.16283987915407855, 0.1595166163141994, 0.15861027190332327, 0.15770392749244713, 0.1564954682779456, 0.1564954682779456, 0.15709969788519637, 0.1564954682779456, 0.1564954682779456, 0.156797583081571, 0.15589123867069488, 0.1583081570996979, 0.1595166163141994, 0.16163141993957703, 0.16163141993957703, 0.1664652567975831, 0.055891238670694864, 0.06948640483383686, 0.06948640483383686, 0.07069486404833837, 0.07220543806646526, 0.07250755287009064, 0.07522658610271904, 0.07764350453172206, 0.07915407854984895, 0.08036253776435046, 0.08338368580060423, 0.08459214501510574, 0.086404833836858, 0.08791540785498489, 0.0891238670694864, 0.09003021148036254, 0.09063444108761329, 0.09244712990936556, 0.09365558912386707, 0.09546827794561934, 0.09728096676737161, 0.09848942598187312, 0.09939577039274924, 0.09939577039274924, 0.09969788519637462, 0.10030211480362537, 0.1015105740181269, 0.10181268882175226, 0.10453172205438066, 0.10845921450151057, 0.11178247734138973, 0.11450151057401813, 0.11812688821752265, 0.12054380664652568, 0.12265861027190332, 0.12598187311178247, 0.12870090634441086, 0.1323262839879154, 0.13746223564954682, 0.14138972809667674, 0.14229607250755286, 0.14531722054380664, 0.14833836858006041, 0.15498489425981873, 0.1646525679758308, 0.17129909365558912, 0.19244712990936555, 0.5876132930513596, 0.6815709969788519, 0.7435045317220543, 0.7728096676737161, 0.8069486404833837, 0.8308157099697885, 0.8528700906344411, 0.8652567975830816, 0.8785498489425981, 0.8957703927492447, 0.913595166163142, 0.9205438066465257, 0.929607250755287, 0.93595166163142, 0.9401812688821752, 0.943202416918429, 0.9483383685800604, 0.9489425981873112, 0.9474320241691843, 0.9413897280966768, 0.9380664652567976, 0.9323262839879154, 0.924773413897281, 0.9163141993957704, 0.9090634441087613, 0.8851963746223565, 0.8725075528700906, 0.8604229607250755, 0.8462235649546828, 0.8151057401812689, 0.7845921450151058, 0.7616314199395771, 0.704833836858006, 0.6247734138972809, 0.5096676737160121, 0.17613293051359516, 0.1664652567975831, 0.159214501510574, 0.15226586102719034, 0.14712990936555892, 0.14380664652567976, 0.1419939577039275, 0.13836858006042296, 0.1365558912386707, 0.1299093655589124, 0.1268882175226586, 0.1256797583081571, 0.12145015105740181, 0.11993957703927492, 0.11661631419939578, 0.11329305135951662, 0.11057401812688822, 0.10634441087613293, 0.10211480362537764, 0.10181268882175226, 0.10090634441087613, 0.1, 0.09969788519637462, 0.09939577039274924, 0.09909365558912386, 0.09728096676737161, 0.09607250755287008, 0.09486404833836858, 0.09305135951661632, 0.09154078549848943, 0.09063444108761329, 0.08942598187311178, 0.08821752265861027, 0.08761329305135952, 0.08519637462235649, 0.08398791540785498, 0.08217522658610273, 0.0797583081570997, 0.07854984894259819, 0.07734138972809668, 0.07371601208459215, 0.07250755287009064, 0.0716012084592145, 0.07039274924471299, 0.06948640483383686, 0.06918429003021148, 0.05558912386706949, 0.09244712990936556, 0.09909365558912386, 0.09758308157099697, 0.08066465256797584, 0.07220543806646526, 0.07099697885196375, 0.06918429003021148, 0.06767371601208459, 0.06737160120845921, 0.06555891238670696, 0.06525679758308157, 0.06465256797583081, 0.06797583081570997, 0.06586102719033232, 0.0661631419939577, 0.06797583081570997, 0.06858006042296072, 0.0755287009063444, 0.07280966767371601, 0.06797583081570997, 0.06797583081570997, 0.06767371601208459, 0.06827794561933535, 0.07009063444108761, 0.07039274924471299, 0.07099697885196375, 0.0716012084592145, 0.07190332326283988, 0.07250755287009064, 0.07311178247734139, 0.07341389728096677, 0.07341389728096677, 0.0743202416918429, 0.07643504531722055, 0.07764350453172206, 0.07915407854984895, 0.09063444108761329, 0.09909365558912386, 0.1661631419939577], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/MutS_IV.gap.json b/pfam_gap_rates/MutS_IV.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d38c770eb3d23958e36d4698fb039faa071d4776
--- /dev/null
+++ b/pfam_gap_rates/MutS_IV.gap.json
@@ -0,0 +1 @@
+{"family": "MutS_IV", "n_seqs": 2585, "length": 101, "gap_rates": [0.21818181818181817, 0.12572533849129594, 0.08897485493230174, 0.06576402321083172, 0.05299806576402321, 0.04680851063829787, 0.04332688588007737, 0.039845261121856865, 0.03442940038684719, 0.029400386847195356, 0.027079303675048357, 0.024758220502901353, 0.02011605415860735, 0.016634429400386848, 0.015473887814313346, 0.011218568665377175, 0.008897485493230174, 0.00851063829787234, 0.00851063829787234, 0.008123791102514507, 0.00851063829787234, 0.00851063829787234, 0.008123791102514507, 0.007736943907156673, 0.006963249516441006, 0.006963249516441006, 0.0065764023210831725, 0.0065764023210831725, 0.0065764023210831725, 0.006963249516441006, 0.006963249516441006, 0.006189555125725338, 0.005029013539651838, 0.8777562862669246, 0.8974854932301741, 0.8607350096711799, 0.07504835589941973, 0.003481624758220503, 0.003094777562862669, 0.0023210831721470018, 0.0023210831721470018, 0.0027079303675048355, 0.006963249516441006, 0.00425531914893617, 0.003481624758220503, 0.023597678916827854, 0.005415860735009671, 0.011218568665377175, 0.0007736943907156673, 0.00038684719535783365, 0.00038684719535783365, 0.0011605415860735009, 0.00038684719535783365, 0.00038684719535783365, 0.010831721470019342, 0.01160541586073501, 0.010831721470019342, 0.9481624758220503, 0.9160541586073501, 0.061895551257253385, 0.0390715667311412, 0.010058027079303675, 0.010058027079303675, 0.9079303675048356, 0.01160541586073501, 0.010058027079303675, 0.8104448742746615, 0.9187620889748549, 0.6947775628626692, 0.010831721470019342, 0.011218568665377175, 0.01160541586073501, 0.01160541586073501, 0.012379110251450677, 0.013152804642166345, 0.013539651837524178, 0.013539651837524178, 0.013926499032882012, 0.014313346228239845, 0.014700193423597678, 0.014700193423597678, 0.015087040618955513, 0.015087040618955513, 0.015473887814313346, 0.015473887814313346, 0.016634429400386848, 0.016634429400386848, 0.016634429400386848, 0.018568665377176014, 0.02011605415860735, 0.02127659574468085, 0.02243713733075435, 0.028239845261121856, 0.03288201160541586, 0.04294003868471954, 0.04912959381044488, 0.06073500967117988, 0.08317214700193423, 0.18220502901353966, 0.28781431334622826, 0.8328820116054159], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Myb_DNA-bind_5.gap.json b/pfam_gap_rates/Myb_DNA-bind_5.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..485a27c091714de69e7b1f4030233e1377ad1a93
--- /dev/null
+++ b/pfam_gap_rates/Myb_DNA-bind_5.gap.json
@@ -0,0 +1 @@
+{"family": "Myb_DNA-bind_5", "n_seqs": 458, "length": 83, "gap_rates": [0.4672489082969432, 0.3864628820960699, 0.31877729257641924, 0.26419213973799127, 0.21179039301310043, 0.17685589519650655, 0.15502183406113537, 0.14410480349344978, 0.13100436681222707, 0.12663755458515283, 0.12445414847161572, 0.11790393013100436, 0.11135371179039301, 0.1091703056768559, 0.1091703056768559, 0.10480349344978165, 0.09606986899563319, 0.08951965065502183, 0.08733624454148471, 0.08296943231441048, 0.09388646288209607, 0.07641921397379912, 0.07205240174672489, 0.07423580786026202, 0.06986899563318777, 0.06331877729257641, 0.1703056768558952, 0.14847161572052403, 0.09388646288209607, 0.07205240174672489, 0.06331877729257641, 0.056768558951965066, 0.05240174672489083, 0.9301310043668122, 0.048034934497816595, 0.039301310043668124, 0.03711790393013101, 0.03275109170305677, 0.021834061135371178, 0.024017467248908297, 0.015283842794759825, 0.015283842794759825, 0.013100436681222707, 0.013100436681222707, 0.013100436681222707, 0.015283842794759825, 0.015283842794759825, 0.019650655021834062, 0.021834061135371178, 0.039301310043668124, 0.039301310043668124, 0.868995633187773, 0.039301310043668124, 0.048034934497816595, 0.05458515283842795, 0.9432314410480349, 0.08078602620087336, 0.9344978165938864, 0.5436681222707423, 0.06550218340611354, 0.05895196506550218, 0.05895196506550218, 0.0611353711790393, 0.0611353711790393, 0.06331877729257641, 0.06331877729257641, 0.06331877729257641, 0.06768558951965066, 0.08078602620087336, 0.08078602620087336, 0.08078602620087336, 0.08733624454148471, 0.08951965065502183, 0.08951965065502183, 0.08951965065502183, 0.10043668122270742, 0.12445414847161572, 0.13755458515283842, 0.1615720524017467, 0.2554585152838428, 0.36899563318777295, 0.6069868995633187, 0.87117903930131], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Myb_DNA-binding.gap.json b/pfam_gap_rates/Myb_DNA-binding.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..53d05b0be988a542e0608f4b3f2ca77e582f3b24
--- /dev/null
+++ b/pfam_gap_rates/Myb_DNA-binding.gap.json
@@ -0,0 +1 @@
+{"family": "Myb_DNA-binding", "n_seqs": 5000, "length": 52, "gap_rates": [0.4062, 0.2846, 0.0578, 0.0238, 0.0176, 0.0148, 0.0134, 0.0114, 0.0106, 0.0098, 0.009, 0.0082, 0.0084, 0.008, 0.0076, 0.0102, 0.0092, 0.005, 0.0064, 0.0034, 0.0126, 0.004, 0.8164, 0.8454, 0.7942, 0.3968, 0.0004, 0.0004, 0.0006, 0.0012, 0.0016, 0.0022, 0.0036, 0.0044, 0.0066, 0.8506, 0.589, 0.0142, 0.007, 0.0076, 0.009, 0.0118, 0.0126, 0.0156, 0.022, 0.0238, 0.0246, 0.0342, 0.0614, 0.1382, 0.3166, 0.5694], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Mycobact_memb.gap.json b/pfam_gap_rates/Mycobact_memb.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..9f50b376ced913325763f6ce46e23e16b97cc48c
--- /dev/null
+++ b/pfam_gap_rates/Mycobact_memb.gap.json
@@ -0,0 +1 @@
+{"family": "Mycobact_memb", "n_seqs": 149, "length": 145, "gap_rates": [0.8456375838926175, 0.7248322147651006, 0.697986577181208, 0.6510067114093959, 0.6442953020134228, 0.610738255033557, 0.5570469798657718, 0.5369127516778524, 0.5302013422818792, 0.5302013422818792, 0.5033557046979866, 0.4966442953020134, 0.4966442953020134, 0.4966442953020134, 0.4899328859060403, 0.4899328859060403, 0.48322147651006714, 0.47651006711409394, 0.47651006711409394, 0.48322147651006714, 0.47651006711409394, 0.4697986577181208, 0.47651006711409394, 0.47651006711409394, 0.4697986577181208, 0.46308724832214765, 0.46308724832214765, 0.47651006711409394, 0.4899328859060403, 0.47651006711409394, 0.4563758389261745, 0.4429530201342282, 0.4563758389261745, 0.4429530201342282, 0.4429530201342282, 0.436241610738255, 0.436241610738255, 0.42953020134228187, 0.40939597315436244, 0.4161073825503356, 0.4899328859060403, 0.348993288590604, 0.30201342281879195, 0.2684563758389262, 0.24161073825503357, 0.2214765100671141, 0.21476510067114093, 0.18791946308724833, 0.1610738255033557, 0.12751677852348994, 0.087248322147651, 0.08053691275167785, 0.0738255033557047, 0.0738255033557047, 0.0738255033557047, 0.0738255033557047, 0.0738255033557047, 0.0738255033557047, 0.0738255033557047, 0.33557046979865773, 0.09395973154362416, 0.9463087248322147, 0.9463087248322147, 0.08053691275167785, 0.21476510067114093, 0.08053691275167785, 0.08053691275167785, 0.08053691275167785, 0.0738255033557047, 0.0738255033557047, 0.087248322147651, 0.087248322147651, 0.06711409395973154, 0.0738255033557047, 0.06711409395973154, 0.06711409395973154, 0.06711409395973154, 0.0738255033557047, 0.087248322147651, 0.087248322147651, 0.0738255033557047, 0.09395973154362416, 0.087248322147651, 0.087248322147651, 0.0738255033557047, 0.0738255033557047, 0.0738255033557047, 0.0738255033557047, 0.0738255033557047, 0.0738255033557047, 0.0738255033557047, 0.0738255033557047, 0.0738255033557047, 0.087248322147651, 0.08053691275167785, 0.08053691275167785, 0.08053691275167785, 0.08053691275167785, 0.0738255033557047, 0.0738255033557047, 0.08053691275167785, 0.0738255033557047, 0.06040268456375839, 0.06040268456375839, 0.053691275167785234, 0.06040268456375839, 0.9463087248322147, 0.912751677852349, 0.053691275167785234, 0.912751677852349, 0.053691275167785234, 0.0738255033557047, 0.9328859060402684, 0.053691275167785234, 0.04697986577181208, 0.04697986577181208, 0.04697986577181208, 0.04697986577181208, 0.04697986577181208, 0.04697986577181208, 0.06040268456375839, 0.08053691275167785, 0.08053691275167785, 0.087248322147651, 0.12751677852348994, 0.15436241610738255, 0.16778523489932887, 0.174496644295302, 0.174496644295302, 0.20134228187919462, 0.22818791946308725, 0.2483221476510067, 0.2751677852348993, 0.28187919463087246, 0.2953020134228188, 0.2953020134228188, 0.28859060402684567, 0.2953020134228188, 0.30201342281879195, 0.3087248322147651, 0.38926174496644295, 0.4563758389261745, 0.4966442953020134, 0.5167785234899329, 0.6174496644295302], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/N6_N4_Mtase.gap.json b/pfam_gap_rates/N6_N4_Mtase.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..6c5e25051bfab47a37ca61d08bc2ff4ccfea4be0
--- /dev/null
+++ b/pfam_gap_rates/N6_N4_Mtase.gap.json
@@ -0,0 +1 @@
+{"family": "N6_N4_Mtase", "n_seqs": 3583, "length": 453, "gap_rates": [0.4256209879988836, 0.2944459949762769, 0.26597823053307285, 0.25927993301702484, 0.2514652525816355, 0.2509070611219648, 0.24951158247278818, 0.24951158247278818, 0.24951158247278818, 0.24923248674295284, 0.24951158247278818, 0.24951158247278818, 0.24923248674295284, 0.24923248674295284, 0.2500697739324588, 0.461066145687971, 0.5629360870778677, 0.590845660061401, 0.6170806586659224, 0.6262908177504884, 0.6500139547864918, 0.7516048004465532, 0.7767234161317332, 0.8004465531677365, 0.8180295841473626, 0.8576611777839799, 0.8763605916829472, 0.8911526653642199, 0.930505163271002, 0.9441808540329333, 0.8961763885012559, 0.8811052190901479, 0.8663131454088753, 0.8400781468043539, 0.8096567122523025, 0.7926318727323471, 0.7680714485068378, 0.6890873569634385, 0.6433156572704437, 0.6195925202344404, 0.6128942227183924, 0.569913480323751, 0.527211833658945, 0.448506837845381, 0.46581077309517166, 0.3848730114429249, 0.37343008651967624, 0.3430086519676249, 0.3215182807703042, 0.3148199832542562, 0.3153781747139269, 0.3142617917945855, 0.3148199832542562, 0.2673737091822495, 0.9207368127267653, 0.9302260675411667, 0.9492045771699693, 0.9497627686296399, 0.9383198437063913, 0.9260396315936367, 0.9148758024002233, 0.2645827518838962, 0.2581635500976835, 0.2514652525816355, 0.24783700809377618, 0.24420876360591684, 0.24365057214624616, 0.2439296678760815, 0.23751046608986884, 0.23639408317052749, 0.23499860452135082, 0.2338822216020095, 0.2324867429528328, 0.2324867429528328, 0.2324867429528328, 0.2464415294445995, 0.24839519955344683, 0.23751046608986884, 0.23583589171085684, 0.23527770025118616, 0.23471950879151549, 0.23471950879151549, 0.23360312587217416, 0.23304493441250348, 0.23360312587217416, 0.23276583868266815, 0.2322076472229975, 0.2324867429528328, 0.23360312587217416, 0.24588333798492884, 0.2405805191180575, 0.23667317890036282, 0.23611498744069215, 0.23583589171085684, 0.24197599776723416, 0.25537259279933017, 0.4289701367569076, 0.8216578286352219, 0.8353335193971533, 0.8638012838403573, 0.921295004186436, 0.9310633547306726, 0.9472509070611219, 0.9427853753837566, 0.9257605358638012, 0.9031537817471392, 0.8559866034049679, 0.8238905944739046, 0.8144013396595032, 0.7923527770025118, 0.3206809935807982, 0.2615126988557075, 0.24951158247278818, 0.2430923806865755, 0.24113871057772815, 0.24337147641641083, 0.2422550934970695, 0.24365057214624616, 0.30923806865754955, 0.2810493999441809, 0.8224951158247279, 0.6374546469439017, 0.26262908177504884, 0.24755791236394084, 0.23778956181970415, 0.2405805191180575, 0.24030142338822216, 0.2422550934970695, 0.2430923806865755, 0.2422550934970695, 0.23834775327937482, 0.2472788166341055, 0.24504605079542283, 0.25202344404130617, 0.8967345799609266, 0.9112475579123639, 0.9299469718113312, 0.944739045492604, 0.9388780351660619, 0.922132291375942, 0.9067820262349986, 0.8917108568238906, 0.4755791236394083, 0.9430644711135919, 0.3611498744069216, 0.28356126151269884, 0.2609545073960368, 0.26207089031537817, 0.2883058889198995, 0.2849567401618755, 0.3737091822495116, 0.48590566564331567, 0.943901758303098, 0.9475300027909573, 0.930505163271002, 0.24783700809377618, 0.24616243371476415, 0.24504605079542283, 0.24420876360591684, 0.24420876360591684, 0.2439296678760815, 0.24281328495674015, 0.24197599776723416, 0.24169690203739883, 0.24113871057772815, 0.24169690203739883, 0.2439296678760815, 0.2456042422550935, 0.24923248674295284, 0.2673737091822495, 0.2777002511861569, 0.2804912084845102, 0.28272397432319285, 0.6572704437622104, 0.7906782026234999, 0.8004465531677365, 0.8135640524699972, 0.8205414457158805, 0.8275188389617639, 0.8328216578286353, 0.8392408596148478, 0.8439854870220486, 0.8518001674574379, 0.8551493162154619, 0.8638012838403573, 0.8679877197878872, 0.8718950600055819, 0.8741278258442646, 0.8760814959531119, 0.8774769746022886, 0.8813843148199833, 0.8841752721183366, 0.8883617080658666, 0.8919899525537259, 0.8945018141222439, 0.8984091543399386, 0.9042701646664806, 0.9092938878035166, 0.9157130895897293, 0.9268769187831426, 0.9374825565168853, 0.9411108010047446, 0.9452972369522746, 0.9497627686296399, 0.9461345241417807, 0.9436226625732627, 0.9391571308958973, 0.9321797376500139, 0.9229695785654479, 0.9120848451018699, 0.9056656433156572, 0.9009210159084566, 0.8956181970415853, 0.8936645269327379, 0.8905944739045493, 0.886128942227184, 0.8819425062796539, 0.8799888361708066, 0.876918783142618, 0.8749651130337706, 0.8730114429249233, 0.8699413898967345, 0.86603404967904, 0.8571029863243093, 0.8529165503767793, 0.8498464973485905, 0.8423109126430366, 0.8361708065866592, 0.8311470834496232, 0.8244487859335752, 0.8163550097683505, 0.8077030421434552, 0.7970974044097126, 0.7689087356963439, 0.5981021490371198, 0.5316773653363104, 0.5093497069494837, 0.4951158247278817, 0.4873011442924923, 0.4750209321797377, 0.46078704995813563, 0.451855986603405, 0.42757465810773093, 0.42422550934970693, 0.41027072285794025, 0.3938040747976556, 0.37175551214066427, 0.36673178900362824, 0.36924365057214625, 0.3723137036003349, 0.38012838403572424, 0.38012838403572424, 0.38626849009210157, 0.39631593636617357, 0.4856265699134803, 0.5051632710019537, 0.6717834217136478, 0.7156014512977952, 0.7404409712531398, 0.7856544794864638, 0.8149595311191739, 0.8386826681551772, 0.8573820820541446, 0.8850125593078426, 0.8998046329891153, 0.9257605358638012, 0.93720346078705, 0.946413619871616, 0.9402735138152386, 0.93301702483952, 0.9176667596985766, 0.8914317610940553, 0.8707786770862406, 0.850125593078426, 0.8275188389617639, 0.7957019257605359, 0.7750488417527212, 0.7273234719508791, 0.7072285794027351, 0.6435947530002791, 0.6505721462461624, 0.6195925202344404, 0.5888919899525538, 0.566564331565727, 0.5422830030700531, 0.519676248953391, 0.495394920457717, 0.47976555958693834, 0.46664806028467765, 0.4373430086519676, 0.40301423388222163, 0.3639408317052749, 0.2645827518838962, 0.8286352218811052, 0.8364499023164945, 0.8397990510745186, 0.8453809656712252, 0.8495674016187552, 0.8520792631872732, 0.8596148478928273, 0.8618476137315099, 0.8640803795701926, 0.8696622941668992, 0.8721741557354172, 0.8746860173039352, 0.8774769746022886, 0.8788724532514652, 0.8819425062796539, 0.8838961763885013, 0.8864080379570193, 0.890315378174714, 0.8931063354730673, 0.8978509628802679, 0.9028746860173039, 0.9073402176946693, 0.912922132291376, 0.9179458554284119, 0.9224113871057773, 0.926318727323472, 0.9307842590008373, 0.9338543120290259, 0.938040747976556, 0.9405526095450739, 0.944739045492604, 0.9475300027909573, 0.9452972369522746, 0.9436226625732627, 0.9394362266257327, 0.9358079821378733, 0.93301702483952, 0.9282723974323193, 0.923806865754954, 0.9201786212670946, 0.915433993859894, 0.9106893664526933, 0.9056656433156572, 0.9006419201786212, 0.8956181970415853, 0.8919899525537259, 0.8880826123360313, 0.886128942227184, 0.8827797934691599, 0.8805470276304772, 0.8777560703321239, 0.8758024002232766, 0.8732905386547586, 0.8713368685459113, 0.8674295283282166, 0.8624058051911806, 0.8607312308121686, 0.8573820820541446, 0.8506837845380966, 0.8487301144292493, 0.8434272955623779, 0.8384035724253419, 0.8342171364778119, 0.8157968183086799, 0.546469439017583, 0.5428411945297237, 0.492883058889199, 0.3215182807703042, 0.30505163271001956, 0.2910968462182529, 0.2832821657828635, 0.27211833658945017, 0.26904828356126154, 0.2704437622104382, 0.2779793469159922, 0.3170527490929389, 0.3605916829472509, 0.5286073123081216, 0.6475020932179738, 0.6114987440692158, 0.7652804912084845, 0.8130058610103266, 0.8704995813564053, 0.9056656433156572, 0.9469718113312866, 0.9369243650572147, 0.8891989952553726, 0.8370080937761653, 0.7853753837566285, 0.7460228858498466, 0.49092938878035164, 0.40273513815238626, 0.31509907898409156, 0.18029584147362546, 0.1440133965950321, 0.1415015350265141, 0.1389896734579961, 0.13591962042980743, 0.13452414178063077, 0.13452414178063077, 0.13089589729277143, 0.12922132291375943, 0.12810493999441808, 0.12754674853474743, 0.12698855707507675, 0.1272676528049121, 0.12782584426458274, 0.12977951437343008, 0.13117499302260677, 0.13536142897013675, 0.12838403572425341, 0.1272676528049121, 0.12531398269606475, 0.9366452693273792, 0.12336031258721741, 0.11945297236952275, 0.11749930226067541, 0.11526653642199275, 0.11498744069215741, 0.11554563215182807, 0.11554563215182807, 0.11638291934133407, 0.11610382361149875, 0.11638291934133407, 0.11666201507116941, 0.11722020653084007, 0.11722020653084007, 0.11722020653084007, 0.11777839799051075, 0.11805749372034607, 0.11861568518001675, 0.11861568518001675, 0.12029025955902875, 0.12308121685738208, 0.1255930784259001, 0.12754674853474743, 0.1356405246999721, 0.1431761094055261, 0.9143176109405526, 0.9143176109405526, 0.9201786212670946, 0.9190622383477532, 0.9143176109405526, 0.9137594194808819, 0.16466648060284678, 0.17303935249790678, 0.18113312866313144, 0.18922690482835614, 0.19508791515489812, 0.20429807423946414, 0.2207647222997488, 0.24197599776723416, 0.29695785654479484, 0.32514652525816357, 0.3614289701367569, 0.39268769187831426, 0.48255651688529166, 0.5459112475579123, 0.7019257605358638, 0.9179458554284119], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/NA37.gap.json b/pfam_gap_rates/NA37.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..9f60de44de52824c9a4fb125d1af71f9c95d7bb0
--- /dev/null
+++ b/pfam_gap_rates/NA37.gap.json
@@ -0,0 +1 @@
+{"family": "NA37", "n_seqs": 356, "length": 399, "gap_rates": [0.32303370786516855, 0.12640449438202248, 0.10112359550561797, 0.09831460674157304, 0.09550561797752809, 0.09269662921348315, 0.09269662921348315, 0.0898876404494382, 0.0898876404494382, 0.08707865168539326, 0.08426966292134831, 0.12359550561797752, 0.09269662921348315, 0.17134831460674158, 0.16853932584269662, 0.4353932584269663, 0.9382022471910112, 0.8820224719101124, 0.29213483146067415, 0.07865168539325842, 0.7556179775280899, 0.8960674157303371, 0.9044943820224719, 0.8342696629213483, 0.6966292134831461, 0.0702247191011236, 0.06179775280898876, 0.06179775280898876, 0.7724719101123596, 0.2247191011235955, 0.05337078651685393, 0.042134831460674156, 0.9241573033707865, 0.042134831460674156, 0.03932584269662921, 0.03932584269662921, 0.03932584269662921, 0.03932584269662921, 0.03932584269662921, 0.03932584269662921, 0.03932584269662921, 0.03932584269662921, 0.03932584269662921, 0.03932584269662921, 0.03932584269662921, 0.03932584269662921, 0.07303370786516854, 0.03651685393258427, 0.03932584269662921, 0.033707865168539325, 0.0449438202247191, 0.1853932584269663, 0.1151685393258427, 0.75, 0.07584269662921349, 0.03651685393258427, 0.033707865168539325, 0.033707865168539325, 0.25, 0.10112359550561797, 0.0702247191011236, 0.07303370786516854, 0.07865168539325842, 0.46629213483146065, 0.42134831460674155, 0.7359550561797753, 0.7724719101123596, 0.7584269662921348, 0.6601123595505618, 0.08426966292134831, 0.07303370786516854, 0.06460674157303371, 0.03932584269662921, 0.03089887640449438, 0.03089887640449438, 0.056179775280898875, 0.042134831460674156, 0.03932584269662921, 0.03651685393258427, 0.03089887640449438, 0.1601123595505618, 0.14325842696629212, 0.7865168539325843, 0.12078651685393259, 0.9325842696629213, 0.02247191011235955, 0.02247191011235955, 0.02247191011235955, 0.025280898876404494, 0.02247191011235955, 0.02247191011235955, 0.02247191011235955, 0.02247191011235955, 0.02247191011235955, 0.02247191011235955, 0.02247191011235955, 0.025280898876404494, 0.025280898876404494, 0.025280898876404494, 0.02247191011235955, 0.02247191011235955, 0.042134831460674156, 0.03089887640449438, 0.02247191011235955, 0.025280898876404494, 0.2556179775280899, 0.025280898876404494, 0.02247191011235955, 0.02247191011235955, 0.02247191011235955, 0.02247191011235955, 0.02247191011235955, 0.02247191011235955, 0.02247191011235955, 0.02247191011235955, 0.02247191011235955, 0.028089887640449437, 0.02247191011235955, 0.02247191011235955, 0.02247191011235955, 0.02247191011235955, 0.7471910112359551, 0.7949438202247191, 0.797752808988764, 0.7752808988764045, 0.7191011235955056, 0.025280898876404494, 0.025280898876404494, 0.02247191011235955, 0.6544943820224719, 0.6460674157303371, 0.02247191011235955, 0.02247191011235955, 0.02247191011235955, 0.02247191011235955, 0.02247191011235955, 0.02247191011235955, 0.02247191011235955, 0.02247191011235955, 0.025280898876404494, 0.025280898876404494, 0.02247191011235955, 0.02247191011235955, 0.02247191011235955, 0.028089887640449437, 0.7443820224719101, 0.7528089887640449, 0.7808988764044944, 0.949438202247191, 0.9382022471910112, 0.7528089887640449, 0.75, 0.7359550561797753, 0.03089887640449438, 0.03932584269662921, 0.03932584269662921, 0.03651685393258427, 0.03932584269662921, 0.03932584269662921, 0.03932584269662921, 0.042134831460674156, 0.1151685393258427, 0.0702247191011236, 0.03089887640449438, 0.5533707865168539, 0.5786516853932584, 0.5842696629213483, 0.5955056179775281, 0.6207865168539326, 0.6797752808988764, 0.9353932584269663, 0.6376404494382022, 0.6039325842696629, 0.5926966292134831, 0.5786516853932584, 0.5646067415730337, 0.5533707865168539, 0.03089887640449438, 0.03089887640449438, 0.028089887640449437, 0.028089887640449437, 0.028089887640449437, 0.028089887640449437, 0.8033707865168539, 0.03089887640449438, 0.03089887640449438, 0.03089887640449438, 0.028089887640449437, 0.028089887640449437, 0.033707865168539325, 0.3595505617977528, 0.35674157303370785, 0.3651685393258427, 0.7387640449438202, 0.6825842696629213, 0.6348314606741573, 0.6235955056179775, 0.5028089887640449, 0.03932584269662921, 0.03089887640449438, 0.025280898876404494, 0.025280898876404494, 0.025280898876404494, 0.025280898876404494, 0.03089887640449438, 0.028089887640449437, 0.028089887640449437, 0.028089887640449437, 0.025280898876404494, 0.13764044943820225, 0.14887640449438203, 0.6067415730337079, 0.898876404494382, 0.9353932584269663, 0.8848314606741573, 0.5702247191011236, 0.05337078651685393, 0.0449438202247191, 0.3960674157303371, 0.033707865168539325, 0.03089887640449438, 0.03089887640449438, 0.03089887640449438, 0.03089887640449438, 0.03089887640449438, 0.03089887640449438, 0.03089887640449438, 0.03089887640449438, 0.03089887640449438, 0.03089887640449438, 0.03089887640449438, 0.033707865168539325, 0.033707865168539325, 0.033707865168539325, 0.033707865168539325, 0.03089887640449438, 0.03089887640449438, 0.033707865168539325, 0.033707865168539325, 0.03089887640449438, 0.03089887640449438, 0.03089887640449438, 0.03089887640449438, 0.03089887640449438, 0.03089887640449438, 0.033707865168539325, 0.033707865168539325, 0.033707865168539325, 0.033707865168539325, 0.033707865168539325, 0.06741573033707865, 0.06179775280898876, 0.03651685393258427, 0.05898876404494382, 0.05056179775280899, 0.03932584269662921, 0.03651685393258427, 0.7837078651685393, 0.8876404494382022, 0.8904494382022472, 0.8174157303370787, 0.7724719101123596, 0.03651685393258427, 0.033707865168539325, 0.033707865168539325, 0.033707865168539325, 0.03651685393258427, 0.0449438202247191, 0.45224719101123595, 0.43258426966292135, 0.41292134831460675, 0.03932584269662921, 0.03089887640449438, 0.03089887640449438, 0.03089887640449438, 0.03089887640449438, 0.03089887640449438, 0.03089887640449438, 0.033707865168539325, 0.05337078651685393, 0.09550561797752809, 0.07303370786516854, 0.07303370786516854, 0.07303370786516854, 0.042134831460674156, 0.033707865168539325, 0.033707865168539325, 0.033707865168539325, 0.033707865168539325, 0.033707865168539325, 0.033707865168539325, 0.033707865168539325, 0.8398876404494382, 0.898876404494382, 0.9410112359550562, 0.9101123595505618, 0.8848314606741573, 0.8314606741573034, 0.033707865168539325, 0.042134831460674156, 0.042134831460674156, 0.042134831460674156, 0.0449438202247191, 0.05056179775280899, 0.11797752808988764, 0.10955056179775281, 0.10674157303370786, 0.2247191011235955, 0.11235955056179775, 0.7949438202247191, 0.8820224719101124, 0.9382022471910112, 0.9044943820224719, 0.8539325842696629, 0.5646067415730337, 0.03089887640449438, 0.033707865168539325, 0.033707865168539325, 0.03089887640449438, 0.03089887640449438, 0.033707865168539325, 0.42134831460674155, 0.5, 0.05056179775280899, 0.03089887640449438, 0.028089887640449437, 0.028089887640449437, 0.028089887640449437, 0.05056179775280899, 0.8342696629213483, 0.028089887640449437, 0.033707865168539325, 0.03651685393258427, 0.03651685393258427, 0.03651685393258427, 0.0449438202247191, 0.0449438202247191, 0.41853932584269665, 0.8904494382022472, 0.949438202247191, 0.9353932584269663, 0.43820224719101125, 0.40168539325842695, 0.3960674157303371, 0.047752808988764044, 0.047752808988764044, 0.047752808988764044, 0.05056179775280899, 0.047752808988764044, 0.047752808988764044, 0.05337078651685393, 0.05056179775280899, 0.05337078651685393, 0.056179775280898875, 0.056179775280898875, 0.05898876404494382, 0.05898876404494382, 0.05898876404494382, 0.05898876404494382, 0.05898876404494382, 0.05898876404494382, 0.05898876404494382, 0.06741573033707865, 0.0702247191011236, 0.06741573033707865, 0.36797752808988765, 0.23314606741573032, 0.4353932584269663, 0.9325842696629213, 0.5421348314606742, 0.24719101123595505, 0.24157303370786518, 0.2556179775280899, 0.5730337078651685, 0.6825842696629213, 0.7247191011235955, 0.5898876404494382, 0.5730337078651685, 0.1853932584269663, 0.16853932584269662, 0.17134831460674158, 0.17415730337078653, 0.18258426966292135, 0.16292134831460675, 0.16573033707865167, 0.16573033707865167, 0.17415730337078653, 0.1797752808988764, 0.1797752808988764, 0.1797752808988764, 0.19101123595505617, 0.20224719101123595, 0.949438202247191, 0.21348314606741572, 0.31741573033707865, 0.45224719101123595, 0.5870786516853933, 0.6151685393258427, 0.7865168539325843], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/NABP.gap.json b/pfam_gap_rates/NABP.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a92b3857367560b06bfae220618ffc5515245f7e
--- /dev/null
+++ b/pfam_gap_rates/NABP.gap.json
@@ -0,0 +1 @@
+{"family": "NABP", "n_seqs": 141, "length": 434, "gap_rates": [0.4397163120567376, 0.425531914893617, 0.41843971631205673, 0.41134751773049644, 0.40425531914893614, 0.40425531914893614, 0.41134751773049644, 0.41134751773049644, 0.3829787234042553, 0.3829787234042553, 0.375886524822695, 0.375886524822695, 0.7446808510638298, 0.375886524822695, 0.375886524822695, 0.375886524822695, 0.375886524822695, 0.375886524822695, 0.3900709219858156, 0.3829787234042553, 0.41843971631205673, 0.40425531914893614, 0.40425531914893614, 0.41134751773049644, 0.41134751773049644, 0.5035460992907801, 0.45390070921985815, 0.44680851063829785, 0.44680851063829785, 0.44680851063829785, 0.3829787234042553, 0.3829787234042553, 0.375886524822695, 0.3900709219858156, 0.375886524822695, 0.36879432624113473, 0.3546099290780142, 0.3475177304964539, 0.3475177304964539, 0.3546099290780142, 0.3475177304964539, 0.3475177304964539, 0.3546099290780142, 0.3546099290780142, 0.3546099290780142, 0.3546099290780142, 0.3475177304964539, 0.3475177304964539, 0.3475177304964539, 0.3475177304964539, 0.3475177304964539, 0.3475177304964539, 0.3475177304964539, 0.3829787234042553, 0.375886524822695, 0.41843971631205673, 0.375886524822695, 0.9078014184397163, 0.375886524822695, 0.3546099290780142, 0.375886524822695, 0.375886524822695, 0.375886524822695, 0.41843971631205673, 0.3617021276595745, 0.36879432624113473, 0.36879432624113473, 0.375886524822695, 0.3829787234042553, 0.36879432624113473, 0.3617021276595745, 0.3617021276595745, 0.3829787234042553, 0.3829787234042553, 0.36879432624113473, 0.3617021276595745, 0.3617021276595745, 0.41843971631205673, 0.3617021276595745, 0.36879432624113473, 0.3617021276595745, 0.3829787234042553, 0.375886524822695, 0.36879432624113473, 0.3546099290780142, 0.3546099290780142, 0.40425531914893614, 0.3971631205673759, 0.425531914893617, 0.36879432624113473, 0.36879432624113473, 0.375886524822695, 0.375886524822695, 0.36879432624113473, 0.36879432624113473, 0.375886524822695, 0.375886524822695, 0.41134751773049644, 0.3971631205673759, 0.3971631205673759, 0.41134751773049644, 0.40425531914893614, 0.4397163120567376, 0.45390070921985815, 0.45390070921985815, 0.425531914893617, 0.851063829787234, 0.900709219858156, 0.9078014184397163, 0.9078014184397163, 0.900709219858156, 0.8865248226950354, 0.851063829787234, 0.6524822695035462, 0.5319148936170213, 0.524822695035461, 0.5390070921985816, 0.574468085106383, 0.5602836879432624, 0.5177304964539007, 0.524822695035461, 0.5035460992907801, 0.48936170212765956, 0.48936170212765956, 0.49645390070921985, 0.5035460992907801, 0.49645390070921985, 0.49645390070921985, 0.5035460992907801, 0.9219858156028369, 0.5957446808510638, 0.5957446808510638, 0.5815602836879432, 0.5531914893617021, 0.5602836879432624, 0.6666666666666666, 0.6382978723404256, 0.5602836879432624, 0.5531914893617021, 0.5460992907801419, 0.5319148936170213, 0.524822695035461, 0.5319148936170213, 0.49645390070921985, 0.49645390070921985, 0.48936170212765956, 0.475177304964539, 0.5957446808510638, 0.49645390070921985, 0.48226950354609927, 0.48226950354609927, 0.475177304964539, 0.475177304964539, 0.475177304964539, 0.46808510638297873, 0.475177304964539, 0.475177304964539, 0.5460992907801419, 0.49645390070921985, 0.48226950354609927, 0.46099290780141844, 0.46099290780141844, 0.46099290780141844, 0.5531914893617021, 0.5531914893617021, 0.5319148936170213, 0.6028368794326241, 0.45390070921985815, 0.44680851063829785, 0.4397163120567376, 0.45390070921985815, 0.45390070921985815, 0.44680851063829785, 0.44680851063829785, 0.44680851063829785, 0.44680851063829785, 0.9361702127659575, 0.4397163120567376, 0.44680851063829785, 0.4397163120567376, 0.4397163120567376, 0.46808510638297873, 0.46808510638297873, 0.475177304964539, 0.475177304964539, 0.46808510638297873, 0.4397163120567376, 0.3829787234042553, 0.3404255319148936, 0.3333333333333333, 0.3262411347517731, 0.3262411347517731, 0.3262411347517731, 0.3333333333333333, 0.3333333333333333, 0.3262411347517731, 0.3475177304964539, 0.44680851063829785, 0.36879432624113473, 0.3475177304964539, 0.3333333333333333, 0.3262411347517731, 0.3262411347517731, 0.3475177304964539, 0.3475177304964539, 0.3829787234042553, 0.3829787234042553, 0.4326241134751773, 0.5390070921985816, 0.6595744680851063, 0.5177304964539007, 0.48936170212765956, 0.48936170212765956, 0.48226950354609927, 0.475177304964539, 0.46808510638297873, 0.48226950354609927, 0.5673758865248227, 0.49645390070921985, 0.48936170212765956, 0.48936170212765956, 0.475177304964539, 0.46808510638297873, 0.46808510638297873, 0.475177304964539, 0.48226950354609927, 0.48936170212765956, 0.48226950354609927, 0.48936170212765956, 0.48936170212765956, 0.48226950354609927, 0.48936170212765956, 0.48936170212765956, 0.48226950354609927, 0.46808510638297873, 0.475177304964539, 0.6312056737588653, 0.5390070921985816, 0.5460992907801419, 0.5177304964539007, 0.46099290780141844, 0.46099290780141844, 0.8014184397163121, 0.900709219858156, 0.7446808510638298, 0.49645390070921985, 0.46808510638297873, 0.4326241134751773, 0.3617021276595745, 0.3404255319148936, 0.3333333333333333, 0.3333333333333333, 0.3333333333333333, 0.3333333333333333, 0.3475177304964539, 0.3333333333333333, 0.3333333333333333, 0.3333333333333333, 0.3546099290780142, 0.36879432624113473, 0.375886524822695, 0.6808510638297872, 0.3475177304964539, 0.3475177304964539, 0.3333333333333333, 0.3262411347517731, 0.3262411347517731, 0.3120567375886525, 0.3829787234042553, 0.3191489361702128, 0.2978723404255319, 0.2978723404255319, 0.2978723404255319, 0.2978723404255319, 0.2978723404255319, 0.2978723404255319, 0.2978723404255319, 0.2978723404255319, 0.3120567375886525, 0.8014184397163121, 0.3900709219858156, 0.36879432624113473, 0.375886524822695, 0.3617021276595745, 0.3617021276595745, 0.3404255319148936, 0.3120567375886525, 0.41134751773049644, 0.3120567375886525, 0.3049645390070922, 0.2978723404255319, 0.3049645390070922, 0.3120567375886525, 0.48226950354609927, 0.3262411347517731, 0.3191489361702128, 0.3191489361702128, 0.3262411347517731, 0.3262411347517731, 0.3262411347517731, 0.3262411347517731, 0.3262411347517731, 0.3191489361702128, 0.3191489361702128, 0.3120567375886525, 0.3120567375886525, 0.3191489361702128, 0.3049645390070922, 0.2978723404255319, 0.2978723404255319, 0.3475177304964539, 0.3475177304964539, 0.2907801418439716, 0.28368794326241137, 0.28368794326241137, 0.28368794326241137, 0.28368794326241137, 0.2907801418439716, 0.28368794326241137, 0.3049645390070922, 0.2907801418439716, 0.3049645390070922, 0.3546099290780142, 0.28368794326241137, 0.28368794326241137, 0.2765957446808511, 0.475177304964539, 0.3120567375886525, 0.3120567375886525, 0.3191489361702128, 0.41134751773049644, 0.3971631205673759, 0.46808510638297873, 0.425531914893617, 0.41134751773049644, 0.3829787234042553, 0.3829787234042553, 0.3829787234042553, 0.3971631205673759, 0.3829787234042553, 0.3404255319148936, 0.8368794326241135, 0.3404255319148936, 0.3404255319148936, 0.2695035460992908, 0.2695035460992908, 0.2695035460992908, 0.2695035460992908, 0.2695035460992908, 0.8865248226950354, 0.3120567375886525, 0.3404255319148936, 0.3120567375886525, 0.3333333333333333, 0.2907801418439716, 0.3404255319148936, 0.3262411347517731, 0.28368794326241137, 0.2765957446808511, 0.2765957446808511, 0.2765957446808511, 0.2765957446808511, 0.2765957446808511, 0.2765957446808511, 0.2765957446808511, 0.2765957446808511, 0.3262411347517731, 0.3900709219858156, 0.375886524822695, 0.28368794326241137, 0.3546099290780142, 0.3617021276595745, 0.3404255319148936, 0.3404255319148936, 0.3475177304964539, 0.3333333333333333, 0.2695035460992908, 0.2978723404255319, 0.2907801418439716, 0.2765957446808511, 0.2695035460992908, 0.2695035460992908, 0.2695035460992908, 0.2765957446808511, 0.2978723404255319, 0.28368794326241137, 0.2695035460992908, 0.2695035460992908, 0.2695035460992908, 0.2695035460992908, 0.28368794326241137, 0.2765957446808511, 0.2765957446808511, 0.2765957446808511, 0.6028368794326241, 0.3900709219858156, 0.36879432624113473, 0.3546099290780142, 0.3404255319148936, 0.2695035460992908, 0.2695035460992908, 0.2695035460992908, 0.2695035460992908, 0.2695035460992908, 0.2695035460992908, 0.2695035460992908, 0.2907801418439716, 0.3120567375886525, 0.5106382978723404, 0.3333333333333333, 0.28368794326241137, 0.28368794326241137, 0.28368794326241137, 0.2695035460992908, 0.2695035460992908, 0.2695035460992908, 0.28368794326241137, 0.2695035460992908, 0.2765957446808511, 0.2765957446808511, 0.2765957446808511, 0.2765957446808511, 0.2765957446808511, 0.2765957446808511, 0.2765957446808511, 0.2765957446808511, 0.28368794326241137, 0.28368794326241137, 0.28368794326241137, 0.2978723404255319, 0.3049645390070922, 0.3049645390070922, 0.3049645390070922, 0.48936170212765956], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/NADPH_Ox.gap.json b/pfam_gap_rates/NADPH_Ox.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..5e2e5d31cff3994355e1296775c5d78015ab5b56
--- /dev/null
+++ b/pfam_gap_rates/NADPH_Ox.gap.json
@@ -0,0 +1 @@
+{"family": "NADPH_Ox", "n_seqs": 265, "length": 108, "gap_rates": [0.46037735849056605, 0.3169811320754717, 0.26037735849056604, 0.25660377358490566, 0.2528301886792453, 0.23773584905660378, 0.22641509433962265, 0.23018867924528302, 0.2188679245283019, 0.2188679245283019, 0.21132075471698114, 0.20754716981132076, 0.2, 0.19622641509433963, 0.1811320754716981, 0.1811320754716981, 0.1811320754716981, 0.1811320754716981, 0.1811320754716981, 0.1811320754716981, 0.1811320754716981, 0.18490566037735848, 0.8452830188679246, 0.9433962264150944, 0.7584905660377359, 0.3622641509433962, 0.2641509433962264, 0.2528301886792453, 0.4830188679245283, 0.4075471698113208, 0.16981132075471697, 0.1660377358490566, 0.1660377358490566, 0.1660377358490566, 0.16226415094339622, 0.16226415094339622, 0.16226415094339622, 0.16226415094339622, 0.16226415094339622, 0.15849056603773584, 0.15849056603773584, 0.15849056603773584, 0.15471698113207547, 0.1471698113207547, 0.1471698113207547, 0.8566037735849057, 0.7811320754716982, 0.1471698113207547, 0.1509433962264151, 0.14339622641509434, 0.13962264150943396, 0.13962264150943396, 0.13962264150943396, 0.13962264150943396, 0.13584905660377358, 0.12830188679245283, 0.12830188679245283, 0.1169811320754717, 0.10943396226415095, 0.09056603773584905, 0.09056603773584905, 0.018867924528301886, 0.8830188679245283, 0.1660377358490566, 0.03773584905660377, 0.033962264150943396, 0.03773584905660377, 0.03773584905660377, 0.03773584905660377, 0.03773584905660377, 0.03773584905660377, 0.03773584905660377, 0.03773584905660377, 0.03773584905660377, 0.03773584905660377, 0.03773584905660377, 0.03773584905660377, 0.03773584905660377, 0.03773584905660377, 0.03773584905660377, 0.03773584905660377, 0.7509433962264151, 0.04150943396226415, 0.03773584905660377, 0.052830188679245285, 0.04150943396226415, 0.03773584905660377, 0.033962264150943396, 0.033962264150943396, 0.033962264150943396, 0.033962264150943396, 0.033962264150943396, 0.033962264150943396, 0.033962264150943396, 0.03773584905660377, 0.03773584905660377, 0.03773584905660377, 0.03773584905660377, 0.03773584905660377, 0.03773584905660377, 0.04150943396226415, 0.045283018867924525, 0.045283018867924525, 0.052830188679245285, 0.06415094339622641, 0.07169811320754717, 0.0830188679245283, 0.2], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/NAD_binding_4.gap.json b/pfam_gap_rates/NAD_binding_4.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..8f79ce46b9bd64c50641ccd9264246f0868e74d9
--- /dev/null
+++ b/pfam_gap_rates/NAD_binding_4.gap.json
@@ -0,0 +1 @@
+{"family": "NAD_binding_4", "n_seqs": 2783, "length": 313, "gap_rates": [0.20625224577793747, 0.16888250089831117, 0.1537908731584621, 0.15127560186848724, 0.15127560186848724, 0.15019762845849802, 0.15019762845849802, 0.14768235716852318, 0.14768235716852318, 0.14624505928853754, 0.14516708587854832, 0.1437297879985627, 0.1437297879985627, 0.14480776140855192, 0.14660438375853396, 0.1422924901185771, 0.14193316564858066, 0.14049586776859505, 0.14049586776859505, 0.1440891124685591, 0.1652892561983471, 0.44376572044556234, 0.3011139058569889, 0.42867409270571327, 0.14085519223859144, 0.1390585698886094, 0.13690262306863096, 0.13582464965864174, 0.13546532518864535, 0.138699245418613, 0.1390585698886094, 0.13798059647862018, 0.13977721882860222, 0.17283507006827165, 0.17822493711821774, 0.28063241106719367, 0.2231404958677686, 0.20337765001796623, 0.17930291052820696, 0.15774344232842258, 0.1541501976284585, 0.14768235716852318, 0.4186130075458139, 0.2069708947179303, 0.2030183255479698, 0.2012217031979878, 0.1979877829680201, 0.1965504850880345, 0.18720804886812792, 0.17678763923823212, 0.16996047430830039, 0.1760689902982393, 0.18720804886812792, 0.18684872439813152, 0.19008264462809918, 0.3557312252964427, 0.5713259072942868, 0.6791232482932088, 0.8375853395616242, 0.8692058929213079, 0.8846568451311534, 0.8778296802012217, 0.859504132231405, 0.6924182536830759, 0.6600790513833992, 0.4937118217750629, 0.37369744879626304, 0.16349263384836507, 0.13582464965864174, 0.1318720804886813, 0.12540424002874595, 0.12324829320876751, 0.12217031979877829, 0.12001437297879985, 0.12001437297879985, 0.12073302191879266, 0.12109234638878907, 0.12073302191879266, 0.12145167085878548, 0.12540424002874595, 0.1318720804886813, 0.13438735177865613, 0.14013654329859865, 0.14085519223859144, 0.13510600071864895, 0.13007545813869925, 0.12935680919870643, 0.12899748472871003, 0.12145167085878548, 0.11893639956881064, 0.12468559108875314, 0.12324829320876751, 0.12037369744879627, 0.16313330937836867, 0.12001437297879985, 0.11570247933884298, 0.11031261228889687, 0.10887531440891125, 0.10815666546891843, 0.10564139417894358, 0.10564139417894358, 0.10528206970894718, 0.1063600431189364, 0.10743801652892562, 0.10743801652892562, 0.1067193675889328, 0.10600071864893999, 0.10600071864893999, 0.11067193675889328, 0.10887531440891125, 0.11031261228889687, 0.10923463887890765, 0.11103126122888969, 0.11462450592885376, 0.13977721882860222, 0.17175709665828243, 0.138699245418613, 0.12109234638878907, 0.11713977721882861, 0.12001437297879985, 0.10995328781890047, 0.11103126122888969, 0.1117499101688825, 0.11103126122888969, 0.11067193675889328, 0.10995328781890047, 0.10959396334890406, 0.10995328781890047, 0.11031261228889687, 0.10995328781890047, 0.10995328781890047, 0.11103126122888969, 0.9468199784405318, 0.9450233560905498, 0.13151275601868487, 0.12109234638878907, 0.14121451670858787, 0.12360761767876392, 0.14013654329859865, 0.9205892921307941, 0.9080129356809199, 0.42184692777578153, 0.15989938914840102, 0.117499101688825, 0.11713977721882861, 0.1167804527488322, 0.11642112827883579, 0.11570247933884298, 0.12217031979877829, 0.9475386273805246, 0.6097736255839022, 0.12073302191879266, 0.12468559108875314, 0.12109234638878907, 0.12145167085878548, 0.11857707509881422, 0.11857707509881422, 0.11929572403880705, 0.12073302191879266, 0.3467481135465325, 0.18253683075817465, 0.28781890046712183, 0.49407114624505927, 0.48293208767517065, 0.49047790154509524, 0.5429392741645707, 0.5522817103844772, 0.5799496945742005, 0.6248652533237513, 0.6187567373338124, 0.5975565936040245, 0.6870283866331297, 0.6960114983830399, 0.7006827164929932, 0.7078692058929213, 0.7150556952928494, 0.7215235357527847, 0.8713618397412863, 0.8907653611210924, 0.8936399568810636, 0.8983111749910169, 0.9022637441609773, 0.9040603665109594, 0.905497664390945, 0.905497664390945, 0.9076536112109235, 0.9087315846209126, 0.9119655048508803, 0.915199425080848, 0.9087315846209126, 0.9080129356809199, 0.9069349622709306, 0.905497664390945, 0.9047790154509522, 0.9029823931009702, 0.9004671218109953, 0.8954365792310456, 0.8929213079410708, 0.8868127919511318, 0.8559108875314408, 0.7172116421128278, 0.7093065037729069, 0.7049946101329501, 0.6974487962630255, 0.6927775781530722, 0.6830758174631693, 0.5601868487243982, 0.510600071864894, 0.4577793747754222, 0.3787279913762127, 0.19475386273805245, 0.1591807402084082, 0.1491196550485088, 0.14121451670858787, 0.138699245418613, 0.1333093783686669, 0.12935680919870643, 0.12288896873877111, 0.12073302191879266, 0.11642112827883579, 0.11210923463887891, 0.11139058569888609, 0.11067193675889328, 0.11103126122888969, 0.10959396334890406, 0.10995328781890047, 0.10959396334890406, 0.10815666546891843, 0.10887531440891125, 0.10887531440891125, 0.10779734099892202, 0.10600071864893999, 0.10528206970894718, 0.10564139417894358, 0.10492274523895077, 0.10384477182896155, 0.10384477182896155, 0.10384477182896155, 0.10456342076895436, 0.1067193675889328, 0.10995328781890047, 0.4753862738052461, 0.4771828961552282, 0.4200503054257995, 0.13402802730865973, 0.11426518145885735, 0.11139058569888609, 0.11282788357887172, 0.11067193675889328, 0.11031261228889687, 0.1117499101688825, 0.11246855910887532, 0.11318720804886813, 0.11642112827883579, 0.11534315486884657, 0.12324829320876751, 0.12360761767876392, 0.1218109953287819, 0.6579231045634207, 0.6751706791232482, 0.6205533596837944, 0.15810276679841898, 0.138699245418613, 0.1422924901185771, 0.1422924901185771, 0.15163492633848366, 0.14444843693855552, 0.14516708587854832, 0.14480776140855192, 0.14013654329859865, 0.14121451670858787, 0.1437297879985627, 0.5519223859144807, 0.15630614444843693, 0.15594681997844054, 0.1545095220984549, 0.15019762845849802, 0.15055695292849444, 0.15199425080848006, 0.15235357527847646, 0.1555874955084441, 0.15702479338842976, 0.15774344232842258, 0.15846209126841537, 0.1602587136183974, 0.1645706072583543, 0.16600790513833993, 0.1692418253683076, 0.22242184692777578, 0.20445562342795545, 0.20445562342795545, 0.20409629895795903, 0.1965504850880345, 0.4423284225655767, 0.4955084441250449, 0.46029464606539705, 0.4232842256557672, 0.9356809198706432, 0.9403521379805965, 0.9317283507006827, 0.2015810276679842, 0.19008264462809918, 0.19044196909809558, 0.19259791591807401, 0.19511318720804888, 0.19942508084800575, 0.2019403521379806, 0.2066115702479339, 0.21056413941789437, 0.2231404958677686, 0.2558390226374416, 0.3568091987064319, 0.6733740567732662], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/NAGLU.gap.json b/pfam_gap_rates/NAGLU.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..0c90fd0d938becdc24a98a4abe228f1c7647e58b
--- /dev/null
+++ b/pfam_gap_rates/NAGLU.gap.json
@@ -0,0 +1 @@
+{"family": "NAGLU", "n_seqs": 306, "length": 349, "gap_rates": [0.42810457516339867, 0.17320261437908496, 0.16013071895424835, 0.1568627450980392, 0.1568627450980392, 0.15359477124183007, 0.15359477124183007, 0.15359477124183007, 0.15359477124183007, 0.15359477124183007, 0.15359477124183007, 0.1437908496732026, 0.1437908496732026, 0.1437908496732026, 0.1437908496732026, 0.1437908496732026, 0.1437908496732026, 0.1437908496732026, 0.1437908496732026, 0.1437908496732026, 0.1437908496732026, 0.1437908496732026, 0.1437908496732026, 0.1437908496732026, 0.1437908496732026, 0.1437908496732026, 0.1437908496732026, 0.14052287581699346, 0.14052287581699346, 0.14052287581699346, 0.14052287581699346, 0.14052287581699346, 0.14052287581699346, 0.14052287581699346, 0.14052287581699346, 0.14052287581699346, 0.14052287581699346, 0.14052287581699346, 0.14052287581699346, 0.14052287581699346, 0.15359477124183007, 0.13725490196078433, 0.13725490196078433, 0.14052287581699346, 0.14052287581699346, 0.14052287581699346, 0.14052287581699346, 0.1437908496732026, 0.1503267973856209, 0.15359477124183007, 0.15359477124183007, 0.15359477124183007, 0.1568627450980392, 0.15359477124183007, 0.15359477124183007, 0.1568627450980392, 0.16013071895424835, 0.16013071895424835, 0.1568627450980392, 0.16013071895424835, 0.16013071895424835, 0.16013071895424835, 0.16013071895424835, 0.16013071895424835, 0.16013071895424835, 0.16013071895424835, 0.16013071895424835, 0.16013071895424835, 0.1568627450980392, 0.15359477124183007, 0.15359477124183007, 0.15359477124183007, 0.1568627450980392, 0.16013071895424835, 0.16013071895424835, 0.16013071895424835, 0.16013071895424835, 0.15359477124183007, 0.1568627450980392, 0.1568627450980392, 0.8529411764705882, 0.1568627450980392, 0.1568627450980392, 0.1568627450980392, 0.16339869281045752, 0.16013071895424835, 0.16013071895424835, 0.16013071895424835, 0.16013071895424835, 0.16339869281045752, 0.16339869281045752, 0.16339869281045752, 0.16339869281045752, 0.16339869281045752, 0.16339869281045752, 0.16339869281045752, 0.16339869281045752, 0.16339869281045752, 0.16339869281045752, 0.16339869281045752, 0.16339869281045752, 0.16339869281045752, 0.16339869281045752, 0.16339869281045752, 0.16339869281045752, 0.16339869281045752, 0.16339869281045752, 0.16666666666666666, 0.16339869281045752, 0.16666666666666666, 0.16666666666666666, 0.16666666666666666, 0.16993464052287582, 0.16666666666666666, 0.16666666666666666, 0.16666666666666666, 0.16666666666666666, 0.16666666666666666, 0.16666666666666666, 0.16666666666666666, 0.16993464052287582, 0.16993464052287582, 0.16993464052287582, 0.16993464052287582, 0.16666666666666666, 0.16666666666666666, 0.16993464052287582, 0.16666666666666666, 0.17973856209150327, 0.17320261437908496, 0.16993464052287582, 0.23529411764705882, 0.16666666666666666, 0.16666666666666666, 0.16666666666666666, 0.17320261437908496, 0.16993464052287582, 0.21895424836601307, 0.17320261437908496, 0.16339869281045752, 0.16993464052287582, 0.16993464052287582, 0.477124183006536, 0.5392156862745098, 0.8398692810457516, 0.8169934640522876, 0.48366013071895425, 0.43790849673202614, 0.17320261437908496, 0.17320261437908496, 0.17973856209150327, 0.16666666666666666, 0.16666666666666666, 0.16666666666666666, 0.16666666666666666, 0.16666666666666666, 0.16993464052287582, 0.16993464052287582, 0.16993464052287582, 0.16993464052287582, 0.16993464052287582, 0.16993464052287582, 0.17320261437908496, 0.16993464052287582, 0.16993464052287582, 0.16993464052287582, 0.16993464052287582, 0.16993464052287582, 0.16993464052287582, 0.16993464052287582, 0.16993464052287582, 0.16993464052287582, 0.16666666666666666, 0.16993464052287582, 0.16666666666666666, 0.16993464052287582, 0.17320261437908496, 0.17320261437908496, 0.6535947712418301, 0.17320261437908496, 0.16993464052287582, 0.16666666666666666, 0.16666666666666666, 0.16666666666666666, 0.16339869281045752, 0.16993464052287582, 0.16666666666666666, 0.16666666666666666, 0.16666666666666666, 0.16666666666666666, 0.16666666666666666, 0.16993464052287582, 0.16993464052287582, 0.3660130718954248, 0.3562091503267974, 0.17320261437908496, 0.16993464052287582, 0.16993464052287582, 0.16339869281045752, 0.16339869281045752, 0.16013071895424835, 0.16013071895424835, 0.16013071895424835, 0.16013071895424835, 0.16013071895424835, 0.16013071895424835, 0.16013071895424835, 0.16013071895424835, 0.16013071895424835, 0.16013071895424835, 0.16013071895424835, 0.16013071895424835, 0.16013071895424835, 0.1568627450980392, 0.1568627450980392, 0.1568627450980392, 0.1568627450980392, 0.1568627450980392, 0.1568627450980392, 0.1568627450980392, 0.1568627450980392, 0.1568627450980392, 0.1568627450980392, 0.1568627450980392, 0.1568627450980392, 0.16013071895424835, 0.16339869281045752, 0.16339869281045752, 0.16339869281045752, 0.477124183006536, 0.42483660130718953, 0.42810457516339867, 0.434640522875817, 0.38235294117647056, 0.37254901960784315, 0.369281045751634, 0.3660130718954248, 0.3627450980392157, 0.17973856209150327, 0.17973856209150327, 0.16339869281045752, 0.16339869281045752, 0.17320261437908496, 0.16993464052287582, 0.16993464052287582, 0.16993464052287582, 0.16993464052287582, 0.16993464052287582, 0.17320261437908496, 0.8823529411764706, 0.16666666666666666, 0.16339869281045752, 0.16339869281045752, 0.16339869281045752, 0.16013071895424835, 0.16013071895424835, 0.16013071895424835, 0.16013071895424835, 0.16013071895424835, 0.16339869281045752, 0.16339869281045752, 0.16339869281045752, 0.16666666666666666, 0.16993464052287582, 0.17647058823529413, 0.9019607843137255, 0.9084967320261438, 0.9084967320261438, 0.9248366013071896, 0.9084967320261438, 0.9052287581699346, 0.8562091503267973, 0.17647058823529413, 0.19934640522875818, 0.18627450980392157, 0.17320261437908496, 0.16339869281045752, 0.16339869281045752, 0.16666666666666666, 0.16666666666666666, 0.16339869281045752, 0.16339869281045752, 0.16339869281045752, 0.16339869281045752, 0.16339869281045752, 0.1568627450980392, 0.1503267973856209, 0.15359477124183007, 0.15359477124183007, 0.1568627450980392, 0.16013071895424835, 0.16013071895424835, 0.16339869281045752, 0.16339869281045752, 0.16339869281045752, 0.16339869281045752, 0.16013071895424835, 0.1568627450980392, 0.15359477124183007, 0.1503267973856209, 0.1503267973856209, 0.1503267973856209, 0.1503267973856209, 0.15359477124183007, 0.15359477124183007, 0.15359477124183007, 0.15359477124183007, 0.1568627450980392, 0.1568627450980392, 0.1568627450980392, 0.16013071895424835, 0.16013071895424835, 0.16013071895424835, 0.16339869281045752, 0.6372549019607843, 0.19281045751633988, 0.3300653594771242, 0.2973856209150327, 0.1895424836601307, 0.17320261437908496, 0.16339869281045752, 0.15359477124183007, 0.1503267973856209, 0.1503267973856209, 0.1503267973856209, 0.1503267973856209, 0.15359477124183007, 0.15359477124183007, 0.15359477124183007, 0.1568627450980392, 0.1568627450980392, 0.1568627450980392, 0.1568627450980392, 0.1568627450980392, 0.1568627450980392, 0.1568627450980392, 0.1568627450980392, 0.1568627450980392, 0.1568627450980392, 0.1568627450980392, 0.1568627450980392, 0.1568627450980392, 0.16013071895424835, 0.16013071895424835, 0.16013071895424835, 0.16339869281045752, 0.17647058823529413, 0.20915032679738563, 0.8986928104575164], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/NEP.gap.json b/pfam_gap_rates/NEP.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c30a54b05b03c2b9f6adf1199f9cb42114255be9
--- /dev/null
+++ b/pfam_gap_rates/NEP.gap.json
@@ -0,0 +1 @@
+{"family": "NEP", "n_seqs": 134, "length": 111, "gap_rates": [0.7761194029850746, 0.5447761194029851, 0.43283582089552236, 0.3805970149253731, 0.3582089552238806, 0.34328358208955223, 0.30597014925373134, 0.26865671641791045, 0.2462686567164179, 0.208955223880597, 0.12686567164179105, 0.11194029850746269, 0.1044776119402985, 0.1044776119402985, 0.1044776119402985, 0.1044776119402985, 0.1044776119402985, 0.08208955223880597, 0.06716417910447761, 0.06716417910447761, 0.05970149253731343, 0.05223880597014925, 0.05223880597014925, 0.05223880597014925, 0.05223880597014925, 0.05223880597014925, 0.05223880597014925, 0.05223880597014925, 0.05223880597014925, 0.05223880597014925, 0.05223880597014925, 0.04477611940298507, 0.04477611940298507, 0.04477611940298507, 0.029850746268656716, 0.029850746268656716, 0.029850746268656716, 0.03731343283582089, 0.03731343283582089, 0.03731343283582089, 0.03731343283582089, 0.029850746268656716, 0.029850746268656716, 0.029850746268656716, 0.029850746268656716, 0.05223880597014925, 0.04477611940298507, 0.04477611940298507, 0.05970149253731343, 0.05970149253731343, 0.05970149253731343, 0.05970149253731343, 0.06716417910447761, 0.07462686567164178, 0.07462686567164178, 0.08208955223880597, 0.08955223880597014, 0.08955223880597014, 0.08955223880597014, 0.08955223880597014, 0.08955223880597014, 0.08955223880597014, 0.08955223880597014, 0.08955223880597014, 0.09701492537313433, 0.11194029850746269, 0.1044776119402985, 0.09701492537313433, 0.1044776119402985, 0.1044776119402985, 0.1044776119402985, 0.09701492537313433, 0.09701492537313433, 0.09701492537313433, 0.09701492537313433, 0.09701492537313433, 0.09701492537313433, 0.09701492537313433, 0.09701492537313433, 0.1865671641791045, 0.08955223880597014, 0.09701492537313433, 0.7238805970149254, 0.09701492537313433, 0.09701492537313433, 0.09701492537313433, 0.09701492537313433, 0.1044776119402985, 0.1044776119402985, 0.11194029850746269, 0.12686567164179105, 0.11940298507462686, 0.11940298507462686, 0.11940298507462686, 0.12686567164179105, 0.13432835820895522, 0.14925373134328357, 0.14925373134328357, 0.14925373134328357, 0.15671641791044777, 0.17164179104477612, 0.208955223880597, 0.2537313432835821, 0.30597014925373134, 0.3283582089552239, 0.35074626865671643, 0.41044776119402987, 0.5149253731343284, 0.6343283582089553, 0.6865671641791045, 0.7910447761194029], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/NHL.gap.json b/pfam_gap_rates/NHL.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..9fcc3650843e16884d67373a633d387095e1269a
--- /dev/null
+++ b/pfam_gap_rates/NHL.gap.json
@@ -0,0 +1 @@
+{"family": "NHL", "n_seqs": 5000, "length": 29, "gap_rates": [0.2142, 0.152, 0.0702, 0.037, 0.02, 0.0112, 0.0054, 0.0046, 0.0028, 0.0284, 0.8772, 0.0128, 0.0006, 0.0002, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0002, 0.0014, 0.004, 0.0052, 0.009, 0.0152, 0.0192, 0.0658, 0.1668, 0.4416], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/NIDO.gap.json b/pfam_gap_rates/NIDO.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..1bd18ca5e9664e6b2cd0b20aabe33131d9d04523
--- /dev/null
+++ b/pfam_gap_rates/NIDO.gap.json
@@ -0,0 +1 @@
+{"family": "NIDO", "n_seqs": 469, "length": 108, "gap_rates": [0.605543710021322, 0.14925373134328357, 0.06823027718550106, 0.04051172707889126, 0.02771855010660981, 0.02771855010660981, 0.0255863539445629, 0.019189765458422176, 0.019189765458422176, 0.019189765458422176, 0.019189765458422176, 0.9019189765458422, 0.9466950959488273, 0.9253731343283582, 0.8997867803837953, 0.019189765458422176, 0.019189765458422176, 0.019189765458422176, 0.019189765458422176, 0.019189765458422176, 0.019189765458422176, 0.017057569296375266, 0.017057569296375266, 0.017057569296375266, 0.017057569296375266, 0.017057569296375266, 0.017057569296375266, 0.6950959488272921, 0.6865671641791045, 0.019189765458422176, 0.019189765458422176, 0.017057569296375266, 0.021321961620469083, 0.908315565031983, 0.0511727078891258, 0.326226012793177, 0.8699360341151386, 0.8017057569296375, 0.39445628997867804, 0.43710021321961623, 0.929637526652452, 0.4115138592750533, 0.37100213219616207, 0.3603411513859275, 0.3006396588486141, 0.6119402985074627, 0.6481876332622601, 0.7142857142857143, 0.7718550106609808, 0.6631130063965884, 0.6162046908315565, 0.6076759061833689, 0.17270788912579957, 0.042643923240938165, 0.021321961620469083, 0.01279317697228145, 0.014925373134328358, 0.01279317697228145, 0.014925373134328358, 0.021321961620469083, 0.021321961620469083, 0.031982942430703626, 0.03624733475479744, 0.9125799573560768, 0.9445628997867804, 0.9189765458422174, 0.908315565031983, 0.24307036247334754, 0.8486140724946695, 0.7803837953091685, 0.744136460554371, 0.1023454157782516, 0.04904051172707889, 0.05543710021321962, 0.05543710021321962, 0.06609808102345416, 0.9445628997867804, 0.11087420042643924, 0.08528784648187633, 0.13646055437100213, 0.1023454157782516, 0.1044776119402985, 0.09381663113006397, 0.07036247334754797, 0.07249466950959488, 0.06396588486140725, 0.06609808102345416, 0.9445628997867804, 0.05970149253731343, 0.057569296375266525, 0.06609808102345416, 0.07889125799573561, 0.08102345415778252, 0.08742004264392324, 0.08742004264392324, 0.08955223880597014, 0.929637526652452, 0.09168443496801706, 0.09808102345415778, 0.10021321961620469, 0.1023454157782516, 0.11513859275053305, 0.11513859275053305, 0.11513859275053305, 0.11940298507462686, 0.1257995735607676, 0.14072494669509594, 0.21748400852878466], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/NODP.gap.json b/pfam_gap_rates/NODP.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..bd9833341c8de6c87be3c20dcc44d6b254ab0d85
--- /dev/null
+++ b/pfam_gap_rates/NODP.gap.json
@@ -0,0 +1 @@
+{"family": "NODP", "n_seqs": 125, "length": 65, "gap_rates": [0.704, 0.152, 0.072, 0.056, 0.016, 0.008, 0.0, 0.0, 0.0, 0.0, 0.0, 0.048, 0.0, 0.0, 0.0, 0.0, 0.008, 0.008, 0.856, 0.816, 0.176, 0.752, 0.144, 0.088, 0.0, 0.936, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.128, 0.128, 0.856, 0.688, 0.008, 0.008, 0.008, 0.008, 0.016, 0.016, 0.016, 0.016, 0.024, 0.032, 0.032, 0.064, 0.112, 0.248, 0.416, 0.64, 0.944], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/NOP5NT.gap.json b/pfam_gap_rates/NOP5NT.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..96a4bbe88b3736bfc1a02aed6be0e459400f7fa0
--- /dev/null
+++ b/pfam_gap_rates/NOP5NT.gap.json
@@ -0,0 +1 @@
+{"family": "NOP5NT", "n_seqs": 702, "length": 71, "gap_rates": [0.0868945868945869, 0.037037037037037035, 0.03418803418803419, 0.03418803418803419, 0.03418803418803419, 0.03418803418803419, 0.03276353276353276, 0.03276353276353276, 0.03133903133903134, 0.03133903133903134, 0.03133903133903134, 0.02849002849002849, 0.027065527065527065, 0.02564102564102564, 0.02564102564102564, 0.027065527065527065, 0.019943019943019943, 0.019943019943019943, 0.6794871794871795, 0.6951566951566952, 0.905982905982906, 0.6866096866096866, 0.6538461538461539, 0.021367521367521368, 0.027065527065527065, 0.021367521367521368, 0.024216524216524215, 0.0584045584045584, 0.39316239316239315, 0.35185185185185186, 0.6495726495726496, 0.3076923076923077, 0.03133903133903134, 0.027065527065527065, 0.024216524216524215, 0.4131054131054131, 0.018518518518518517, 0.014245014245014245, 0.014245014245014245, 0.02849002849002849, 0.02564102564102564, 0.014245014245014245, 0.011396011396011397, 0.009971509971509971, 0.007122507122507123, 0.011396011396011397, 0.011396011396011397, 0.014245014245014245, 0.014245014245014245, 0.01566951566951567, 0.01282051282051282, 0.014245014245014245, 0.01566951566951567, 0.01566951566951567, 0.01566951566951567, 0.01566951566951567, 0.017094017094017096, 0.018518518518518517, 0.019943019943019943, 0.019943019943019943, 0.019943019943019943, 0.019943019943019943, 0.019943019943019943, 0.022792022792022793, 0.022792022792022793, 0.024216524216524215, 0.027065527065527065, 0.02849002849002849, 0.039886039886039885, 0.04415954415954416, 0.20085470085470086], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/NQR2_RnfD_RnfE.gap.json b/pfam_gap_rates/NQR2_RnfD_RnfE.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..0da1643298f45eedbbbd5cde92c7667a114e217a
--- /dev/null
+++ b/pfam_gap_rates/NQR2_RnfD_RnfE.gap.json
@@ -0,0 +1 @@
+{"family": "NQR2_RnfD_RnfE", "n_seqs": 1206, "length": 408, "gap_rates": [0.5281923714759535, 0.33250414593698174, 0.23714759535655058, 0.20315091210613598, 0.1998341625207297, 0.19734660033167495, 0.19485903814262023, 0.19071310116086235, 0.1890547263681592, 0.18822553897180763, 0.18490878938640132, 0.1791044776119403, 0.17412935323383086, 0.1625207296849088, 0.1583747927031509, 0.14925373134328357, 0.12603648424543948, 0.12106135986733002, 0.1111111111111111, 0.10696517412935323, 0.10281923714759536, 0.1011608623548922, 0.10033167495854063, 0.10033167495854063, 0.09867330016583747, 0.09701492537313433, 0.0945273631840796, 0.0945273631840796, 0.09286898839137644, 0.09286898839137644, 0.09286898839137644, 0.09286898839137644, 0.09286898839137644, 0.09286898839137644, 0.09286898839137644, 0.09369817578772803, 0.09369817578772803, 0.09369817578772803, 0.09286898839137644, 0.7429519071310116, 0.7429519071310116, 0.7454394693200663, 0.746268656716418, 0.7495854063018242, 0.7520729684908789, 0.7553897180762852, 0.7603648424543947, 0.7611940298507462, 0.7620232172470979, 0.8101160862354893, 0.8383084577114428, 0.8432835820895522, 0.8466003316749585, 0.8490878938640133, 0.8524046434494196, 0.8590381426202321, 0.8598673300165838, 0.8615257048092869, 0.8615257048092869, 0.8930348258706468, 0.9237147595356551, 0.8747927031509121, 0.8615257048092869, 0.8606965174129353, 0.8598673300165838, 0.8557213930348259, 0.8507462686567164, 0.8474295190713101, 0.8441127694859039, 0.8391376451077943, 0.8192371475953566, 0.7620232172470979, 0.7620232172470979, 0.7603648424543947, 0.7595356550580431, 0.753731343283582, 0.7512437810945274, 0.7479270315091211, 0.746268656716418, 0.7429519071310116, 0.7429519071310116, 0.7388059701492538, 0.09286898839137644, 0.09203980099502487, 0.09203980099502487, 0.0912106135986733, 0.0912106135986733, 0.09203980099502487, 0.09203980099502487, 0.0912106135986733, 0.0912106135986733, 0.09038142620232173, 0.09038142620232173, 0.09038142620232173, 0.09038142620232173, 0.09038142620232173, 0.09038142620232173, 0.08872305140961857, 0.08872305140961857, 0.08872305140961857, 0.09038142620232173, 0.09038142620232173, 0.0912106135986733, 0.0912106135986733, 0.0945273631840796, 0.09535655058043117, 0.09369817578772803, 0.09369817578772803, 0.3996683250414594, 0.37396351575456055, 0.3615257048092869, 0.8034825870646766, 0.7553897180762852, 0.0912106135986733, 0.09203980099502487, 0.09203980099502487, 0.0912106135986733, 0.0912106135986733, 0.09038142620232173, 0.09038142620232173, 0.09038142620232173, 0.08872305140961857, 0.08872305140961857, 0.08872305140961857, 0.08872305140961857, 0.08872305140961857, 0.08955223880597014, 0.08955223880597014, 0.08955223880597014, 0.08872305140961857, 0.08872305140961857, 0.09038142620232173, 0.0912106135986733, 0.08872305140961857, 0.08872305140961857, 0.08955223880597014, 0.08872305140961857, 0.08706467661691543, 0.08706467661691543, 0.08706467661691543, 0.08706467661691543, 0.08706467661691543, 0.08706467661691543, 0.08706467661691543, 0.087893864013267, 0.09950248756218906, 0.0945273631840796, 0.0945273631840796, 0.08872305140961857, 0.08955223880597014, 0.08872305140961857, 0.09203980099502487, 0.09369817578772803, 0.09369817578772803, 0.09369817578772803, 0.0912106135986733, 0.08955223880597014, 0.09038142620232173, 0.08955223880597014, 0.08955223880597014, 0.08955223880597014, 0.08955223880597014, 0.09038142620232173, 0.08955223880597014, 0.08955223880597014, 0.09038142620232173, 0.09038142620232173, 0.09038142620232173, 0.09038142620232173, 0.09038142620232173, 0.09286898839137644, 0.08872305140961857, 0.08955223880597014, 0.08955223880597014, 0.0912106135986733, 0.09369817578772803, 0.09618573797678276, 0.09701492537313433, 0.10530679933665009, 0.6417910447761194, 0.75787728026534, 0.7213930348258707, 0.1517412935323383, 0.12437810945273632, 0.1824212271973466, 0.1310116086235489, 0.36069651741293535, 0.4087893864013267, 0.4734660033167496, 0.5257048092868989, 0.6243781094527363, 0.6616915422885572, 0.7139303482587065, 0.7479270315091211, 0.7678275290215588, 0.7744610281923715, 0.7910447761194029, 0.8208955223880597, 0.8466003316749585, 0.8797678275290216, 0.9145936981757877, 0.9245439469320066, 0.9295190713101161, 0.9461028192371476, 0.9411276948590381, 0.927860696517413, 0.917910447761194, 0.8897180762852405, 0.8681592039800995, 0.8349917081260365, 0.8084577114427861, 0.7844112769485904, 0.7719734660033167, 0.7587064676616916, 0.724709784411277, 0.6907131011608624, 0.6475953565505804, 0.5787728026533997, 0.5016583747927031, 0.42703150912106136, 0.37728026533996684, 0.22388059701492538, 0.12023217247097844, 0.12437810945273632, 0.12271973466003316, 0.11940298507462686, 0.11940298507462686, 0.11525704809286899, 0.11940298507462686, 0.12023217247097844, 0.12106135986733002, 0.12354892205638475, 0.13598673300165837, 0.1310116086235489, 0.12023217247097844, 0.1791044776119403, 0.29767827529021557, 0.4311774461028192, 0.5207296849087893, 0.7064676616915423, 0.7794361525704809, 0.8665008291873963, 0.9253731343283582, 0.9411276948590381, 0.9485903814262023, 0.9369817578772802, 0.9096185737976783, 0.814262023217247, 0.7454394693200663, 0.6019900497512438, 0.4560530679933665, 0.3648424543946932, 0.2064676616915423, 0.17661691542288557, 0.12354892205638475, 0.7354892205638475, 0.5339966832504146, 0.14759535655058043, 0.11940298507462686, 0.11525704809286899, 0.11442786069651742, 0.11276948590381426, 0.10862354892205639, 0.10364842454394693, 0.10199004975124377, 0.10199004975124377, 0.10530679933665009, 0.11774461028192372, 0.10530679933665009, 0.09286898839137644, 0.09203980099502487, 0.08623548922056384, 0.0845771144278607, 0.07379767827529021, 0.07213930348258707, 0.06965174129353234, 0.06135986733001658, 0.05804311774461028, 0.05140961857379768, 0.04975124378109453, 0.04892205638474295, 0.0505804311774461, 0.04892205638474295, 0.04809286898839138, 0.05140961857379768, 0.04809286898839138, 0.04560530679933665, 0.04643449419568822, 0.04643449419568822, 0.0472636815920398, 0.0472636815920398, 0.04560530679933665, 0.04477611940298507, 0.04477611940298507, 0.04477611940298507, 0.04477611940298507, 0.04477611940298507, 0.0439469320066335, 0.0439469320066335, 0.0439469320066335, 0.04311774461028192, 0.04311774461028192, 0.04311774461028192, 0.0439469320066335, 0.04311774461028192, 0.04311774461028192, 0.04311774461028192, 0.0439469320066335, 0.0439469320066335, 0.0439469320066335, 0.04477611940298507, 0.04477611940298507, 0.0439469320066335, 0.1865671641791045, 0.32587064676616917, 0.6890547263681592, 0.7769485903814262, 0.9494195688225538, 0.9328358208955224, 0.74212271973466, 0.6517412935323383, 0.1998341625207297, 0.148424543946932, 0.06467661691542288, 0.13681592039800994, 0.13018242122719734, 0.1044776119402985, 0.0538971807628524, 0.04892205638474295, 0.0472636815920398, 0.04477611940298507, 0.04477611940298507, 0.0439469320066335, 0.0439469320066335, 0.0439469320066335, 0.04477611940298507, 0.0439469320066335, 0.04477611940298507, 0.04311774461028192, 0.04311774461028192, 0.04311774461028192, 0.0439469320066335, 0.0439469320066335, 0.0439469320066335, 0.04311774461028192, 0.04311774461028192, 0.04311774461028192, 0.04311774461028192, 0.04311774461028192, 0.04311774461028192, 0.0439469320066335, 0.04311774461028192, 0.04477611940298507, 0.04477611940298507, 0.04311774461028192, 0.04477611940298507, 0.04477611940298507, 0.0439469320066335, 0.04477611940298507, 0.04311774461028192, 0.0439469320066335, 0.04477611940298507, 0.04477611940298507, 0.04477611940298507, 0.04477611940298507, 0.04560530679933665, 0.04643449419568822, 0.04560530679933665, 0.04560530679933665, 0.04643449419568822, 0.04643449419568822, 0.04809286898839138, 0.04809286898839138, 0.0505804311774461, 0.05223880597014925, 0.05306799336650083, 0.05306799336650083, 0.746268656716418, 0.05804311774461028, 0.05472636815920398, 0.0538971807628524, 0.0538971807628524, 0.05472636815920398, 0.0538971807628524, 0.05555555555555555, 0.05555555555555555, 0.05638474295190713, 0.05721393034825871, 0.05804311774461028, 0.05887230514096186, 0.06053067993366501, 0.06218905472636816, 0.06218905472636816, 0.06467661691542288, 0.06799336650082918, 0.07131011608623548, 0.07545605306799337, 0.07628524046434494, 0.07960199004975124, 0.08291873963515754, 0.11194029850746269, 0.11442786069651742, 0.14262023217247097, 0.16417910447761194, 0.1890547263681592, 0.21641791044776118, 0.2537313432835821, 0.4925373134328358], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/NQRA.gap.json b/pfam_gap_rates/NQRA.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..40c44747bc3bfce22d7e77ddec82c5ec38fc1778
--- /dev/null
+++ b/pfam_gap_rates/NQRA.gap.json
@@ -0,0 +1 @@
+{"family": "NQRA", "n_seqs": 312, "length": 260, "gap_rates": [0.5128205128205128, 0.22756410256410256, 0.14102564102564102, 0.1282051282051282, 0.125, 0.125, 0.12179487179487179, 0.12179487179487179, 0.12179487179487179, 0.11538461538461539, 0.11538461538461539, 0.11538461538461539, 0.11538461538461539, 0.11538461538461539, 0.11217948717948718, 0.11217948717948718, 0.11538461538461539, 0.11538461538461539, 0.11217948717948718, 0.09615384615384616, 0.10897435897435898, 0.09615384615384616, 0.09615384615384616, 0.09294871794871795, 0.08974358974358974, 0.08974358974358974, 0.08333333333333333, 0.08333333333333333, 0.08012820512820513, 0.08012820512820513, 0.08012820512820513, 0.08012820512820513, 0.07692307692307693, 0.07692307692307693, 0.07692307692307693, 0.07371794871794872, 0.07371794871794872, 0.07371794871794872, 0.0673076923076923, 0.060897435897435896, 0.060897435897435896, 0.057692307692307696, 0.04807692307692308, 0.04807692307692308, 0.04807692307692308, 0.04807692307692308, 0.04807692307692308, 0.04807692307692308, 0.04807692307692308, 0.04807692307692308, 0.04807692307692308, 0.04807692307692308, 0.04807692307692308, 0.04807692307692308, 0.04807692307692308, 0.04807692307692308, 0.04807692307692308, 0.04807692307692308, 0.04807692307692308, 0.04807692307692308, 0.05128205128205128, 0.04807692307692308, 0.04807692307692308, 0.04807692307692308, 0.04807692307692308, 0.04807692307692308, 0.04807692307692308, 0.04487179487179487, 0.04487179487179487, 0.04487179487179487, 0.04487179487179487, 0.04487179487179487, 0.041666666666666664, 0.041666666666666664, 0.041666666666666664, 0.041666666666666664, 0.041666666666666664, 0.041666666666666664, 0.041666666666666664, 0.04487179487179487, 0.04487179487179487, 0.04487179487179487, 0.04487179487179487, 0.04487179487179487, 0.04487179487179487, 0.04807692307692308, 0.04487179487179487, 0.04487179487179487, 0.038461538461538464, 0.041666666666666664, 0.04487179487179487, 0.038461538461538464, 0.038461538461538464, 0.038461538461538464, 0.038461538461538464, 0.40384615384615385, 0.391025641025641, 0.8525641025641025, 0.04807692307692308, 0.04807692307692308, 0.04487179487179487, 0.041666666666666664, 0.041666666666666664, 0.05128205128205128, 0.04487179487179487, 0.04807692307692308, 0.05128205128205128, 0.07371794871794872, 0.11858974358974358, 0.09615384615384616, 0.08653846153846154, 0.0641025641025641, 0.057692307692307696, 0.05448717948717949, 0.04487179487179487, 0.041666666666666664, 0.038461538461538464, 0.038461538461538464, 0.03205128205128205, 0.03205128205128205, 0.03205128205128205, 0.03205128205128205, 0.03205128205128205, 0.03205128205128205, 0.03205128205128205, 0.03205128205128205, 0.03205128205128205, 0.03205128205128205, 0.035256410256410256, 0.035256410256410256, 0.03205128205128205, 0.03205128205128205, 0.038461538461538464, 0.038461538461538464, 0.041666666666666664, 0.04487179487179487, 0.04487179487179487, 0.04487179487179487, 0.04487179487179487, 0.038461538461538464, 0.038461538461538464, 0.038461538461538464, 0.038461538461538464, 0.038461538461538464, 0.038461538461538464, 0.041666666666666664, 0.041666666666666664, 0.041666666666666664, 0.041666666666666664, 0.041666666666666664, 0.041666666666666664, 0.041666666666666664, 0.041666666666666664, 0.041666666666666664, 0.041666666666666664, 0.041666666666666664, 0.041666666666666664, 0.041666666666666664, 0.041666666666666664, 0.041666666666666664, 0.041666666666666664, 0.041666666666666664, 0.04487179487179487, 0.04807692307692308, 0.04807692307692308, 0.04487179487179487, 0.04487179487179487, 0.041666666666666664, 0.035256410256410256, 0.038461538461538464, 0.038461538461538464, 0.035256410256410256, 0.035256410256410256, 0.035256410256410256, 0.035256410256410256, 0.035256410256410256, 0.035256410256410256, 0.035256410256410256, 0.035256410256410256, 0.035256410256410256, 0.035256410256410256, 0.035256410256410256, 0.035256410256410256, 0.035256410256410256, 0.035256410256410256, 0.035256410256410256, 0.035256410256410256, 0.10256410256410256, 0.1282051282051282, 0.04487179487179487, 0.03205128205128205, 0.03205128205128205, 0.035256410256410256, 0.035256410256410256, 0.035256410256410256, 0.057692307692307696, 0.0641025641025641, 0.0641025641025641, 0.14743589743589744, 0.07692307692307693, 0.07051282051282051, 0.1858974358974359, 0.16666666666666666, 0.9166666666666666, 0.8557692307692307, 0.10256410256410256, 0.060897435897435896, 0.04487179487179487, 0.03205128205128205, 0.038461538461538464, 0.038461538461538464, 0.03205128205128205, 0.028846153846153848, 0.028846153846153848, 0.028846153846153848, 0.028846153846153848, 0.028846153846153848, 0.03205128205128205, 0.03205128205128205, 0.035256410256410256, 0.038461538461538464, 0.03205128205128205, 0.03205128205128205, 0.03205128205128205, 0.03205128205128205, 0.035256410256410256, 0.035256410256410256, 0.035256410256410256, 0.035256410256410256, 0.035256410256410256, 0.035256410256410256, 0.035256410256410256, 0.035256410256410256, 0.035256410256410256, 0.035256410256410256, 0.035256410256410256, 0.035256410256410256, 0.035256410256410256, 0.035256410256410256, 0.03205128205128205, 0.03205128205128205, 0.03205128205128205, 0.03205128205128205, 0.03205128205128205, 0.03205128205128205, 0.035256410256410256, 0.035256410256410256, 0.035256410256410256, 0.035256410256410256, 0.035256410256410256, 0.035256410256410256, 0.035256410256410256, 0.035256410256410256, 0.035256410256410256, 0.035256410256410256, 0.035256410256410256, 0.04487179487179487, 0.05448717948717949, 0.07051282051282051, 0.22435897435897437], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/NTP_transf_2.gap.json b/pfam_gap_rates/NTP_transf_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..bc153e5cb511a9264eff64931983398193cd83a6
--- /dev/null
+++ b/pfam_gap_rates/NTP_transf_2.gap.json
@@ -0,0 +1 @@
+{"family": "NTP_transf_2", "n_seqs": 5000, "length": 119, "gap_rates": [0.9258, 0.8024, 0.6904, 0.5908, 0.5324, 0.479, 0.429, 0.3792, 0.3514, 0.3342, 0.3056, 0.2808, 0.2806, 0.832, 0.9254, 0.7362, 0.0948, 0.0652, 0.0404, 0.022, 0.0112, 0.003, 0.0018, 0.0018, 0.0014, 0.0028, 0.003, 0.0022, 0.002, 0.002, 0.01, 0.0028, 0.0036, 0.0012, 0.931, 0.0, 0.0002, 0.0002, 0.0004, 0.0006, 0.002, 0.0024, 0.005, 0.01, 0.0128, 0.0146, 0.0188, 0.2016, 0.3086, 0.5222, 0.5794, 0.7126, 0.7578, 0.784, 0.8084, 0.8296, 0.8496, 0.8704, 0.8936, 0.9246, 0.9416, 0.9052, 0.8812, 0.8628, 0.8436, 0.8192, 0.7982, 0.7702, 0.736, 0.6874, 0.6032, 0.6832, 0.6482, 0.4232, 0.3822, 0.337, 0.2896, 0.28, 0.2814, 0.2836, 0.2868, 0.2906, 0.2968, 0.3038, 0.3122, 0.3198, 0.3274, 0.3374, 0.4336, 0.3866, 0.3662, 0.3674, 0.3664, 0.372, 0.3774, 0.3854, 0.3956, 0.934, 0.9136, 0.4456, 0.488, 0.5002, 0.5202, 0.5398, 0.5562, 0.7692, 0.6564, 0.6676, 0.6758, 0.687, 0.7026, 0.7184, 0.7338, 0.752, 0.7774, 0.802, 0.8354, 0.8838, 0.9328], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/NTP_transf_4.gap.json b/pfam_gap_rates/NTP_transf_4.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a2d4af88fd5ac49e87ce4b99f9605d06c89e0499
--- /dev/null
+++ b/pfam_gap_rates/NTP_transf_4.gap.json
@@ -0,0 +1 @@
+{"family": "NTP_transf_4", "n_seqs": 124, "length": 184, "gap_rates": [0.20967741935483872, 0.07258064516129033, 0.03225806451612903, 0.03225806451612903, 0.03225806451612903, 0.03225806451612903, 0.03225806451612903, 0.03225806451612903, 0.6774193548387096, 0.04032258064516129, 0.024193548387096774, 0.024193548387096774, 0.024193548387096774, 0.024193548387096774, 0.016129032258064516, 0.016129032258064516, 0.016129032258064516, 0.016129032258064516, 0.016129032258064516, 0.016129032258064516, 0.016129032258064516, 0.016129032258064516, 0.016129032258064516, 0.016129032258064516, 0.016129032258064516, 0.016129032258064516, 0.016129032258064516, 0.016129032258064516, 0.016129032258064516, 0.016129032258064516, 0.016129032258064516, 0.016129032258064516, 0.016129032258064516, 0.016129032258064516, 0.04838709677419355, 0.016129032258064516, 0.016129032258064516, 0.024193548387096774, 0.008064516129032258, 0.008064516129032258, 0.008064516129032258, 0.008064516129032258, 0.9274193548387096, 0.9435483870967742, 0.9032258064516129, 0.5967741935483871, 0.024193548387096774, 0.016129032258064516, 0.016129032258064516, 0.024193548387096774, 0.024193548387096774, 0.024193548387096774, 0.024193548387096774, 0.03225806451612903, 0.03225806451612903, 0.024193548387096774, 0.6854838709677419, 0.6854838709677419, 0.6774193548387096, 0.6774193548387096, 0.03225806451612903, 0.03225806451612903, 0.04032258064516129, 0.03225806451612903, 0.024193548387096774, 0.03225806451612903, 0.7661290322580645, 0.9112903225806451, 0.9435483870967742, 0.7903225806451613, 0.7580645161290323, 0.6209677419354839, 0.0967741935483871, 0.024193548387096774, 0.024193548387096774, 0.024193548387096774, 0.04032258064516129, 0.6451612903225806, 0.7661290322580645, 0.056451612903225805, 0.024193548387096774, 0.016129032258064516, 0.016129032258064516, 0.016129032258064516, 0.016129032258064516, 0.016129032258064516, 0.016129032258064516, 0.016129032258064516, 0.016129032258064516, 0.016129032258064516, 0.04032258064516129, 0.04032258064516129, 0.024193548387096774, 0.056451612903225805, 0.056451612903225805, 0.03225806451612903, 0.03225806451612903, 0.024193548387096774, 0.04838709677419355, 0.07258064516129033, 0.9354838709677419, 0.016129032258064516, 0.024193548387096774, 0.024193548387096774, 0.024193548387096774, 0.03225806451612903, 0.03225806451612903, 0.03225806451612903, 0.03225806451612903, 0.9435483870967742, 0.8145161290322581, 0.03225806451612903, 0.03225806451612903, 0.03225806451612903, 0.03225806451612903, 0.03225806451612903, 0.03225806451612903, 0.04032258064516129, 0.04032258064516129, 0.04032258064516129, 0.04032258064516129, 0.04032258064516129, 0.1532258064516129, 0.12903225806451613, 0.16129032258064516, 0.1693548387096774, 0.16129032258064516, 0.12903225806451613, 0.13709677419354838, 0.0967741935483871, 0.12903225806451613, 0.20161290322580644, 0.4838709677419355, 0.47580645161290325, 0.5161290322580645, 0.6612903225806451, 0.7338709677419355, 0.7903225806451613, 0.8709677419354839, 0.9032258064516129, 0.8709677419354839, 0.8064516129032258, 0.75, 0.7258064516129032, 0.6048387096774194, 0.08870967741935484, 0.06451612903225806, 0.056451612903225805, 0.056451612903225805, 0.06451612903225806, 0.08064516129032258, 0.7016129032258065, 0.056451612903225805, 0.04838709677419355, 0.04838709677419355, 0.04838709677419355, 0.04838709677419355, 0.056451612903225805, 0.04838709677419355, 0.04838709677419355, 0.04838709677419355, 0.04838709677419355, 0.04838709677419355, 0.04838709677419355, 0.04838709677419355, 0.056451612903225805, 0.056451612903225805, 0.056451612903225805, 0.056451612903225805, 0.056451612903225805, 0.056451612903225805, 0.056451612903225805, 0.056451612903225805, 0.06451612903225806, 0.07258064516129033, 0.07258064516129033, 0.08870967741935484, 0.12903225806451613, 0.1693548387096774, 0.24193548387096775, 0.2903225806451613, 0.3387096774193548, 0.3790322580645161, 0.6935483870967742], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/NYN.gap.json b/pfam_gap_rates/NYN.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f269b63dc03fc7d039cd061b17fa03df8e26a10b
--- /dev/null
+++ b/pfam_gap_rates/NYN.gap.json
@@ -0,0 +1 @@
+{"family": "NYN", "n_seqs": 2589, "length": 199, "gap_rates": [0.4951718810351487, 0.28891463885670143, 0.22325222093472383, 0.19389725762842797, 0.13441483198146004, 0.12707609115488605, 0.12630359212050984, 0.12437234453456933, 0.12321359598300502, 0.12282734646581692, 0.1212823483970645, 0.1212823483970645, 0.11896485129393589, 0.29934337582078024, 0.30088837388953266, 0.19157976052529935, 0.511394360757049, 0.8234839706450366, 0.8570876786404017, 0.8864426419466975, 0.9258400926998841, 0.8980301274623407, 0.8717651602935497, 0.8377752027809965, 0.6921591348010815, 0.4951718810351487, 0.4283507145616068, 0.47779065276168403, 0.40401699497875626, 0.8937813827732716, 0.7887215140981074, 0.21475473155658556, 0.10776361529548088, 0.10235612205484743, 0.09733487833140209, 0.09656237929702588, 0.09540363074546157, 0.09385863267670916, 0.09308613364233295, 0.09269988412514485, 0.09231363460795675, 0.09154113557358054, 0.0880648899188876, 0.7632290459636926, 0.8045577443028196, 0.8609501738122828, 0.943993820007725, 0.8941676322904596, 0.8362302047122441, 0.7902665121668598, 0.7369640787949016, 0.08960988798764001, 0.10428736964078796, 0.09656237929702588, 0.9382000772499034, 0.0888373889532638, 0.17226728466589417, 0.08729239088451139, 0.08420239474700657, 0.08033989957512554, 0.07879490150637311, 0.0780224024719969, 0.0776361529548088, 0.07493240633449208, 0.7342603321745848, 0.8277327153341059, 0.9138663576670529, 0.9409038238702202, 0.9285438393202009, 0.9022788721514098, 0.7925840092699884, 0.5909617612977984, 0.23522595596755505, 0.2657396678254152, 0.23638470451911936, 0.20162224797219003, 0.1533410583236771, 0.9320200849748937, 0.9436075704905369, 0.9490150637311703, 0.9354963306295867, 0.9273850907686365, 0.09694862881421398, 0.07145616067979915, 0.06759366550791812, 0.06295867130166087, 0.06179992275009656, 0.918115102356122, 0.061027423715720355, 0.05948242564696794, 0.055619930475086905, 0.9466975666280417, 0.9185013518733102, 0.05368868288914639, 0.055619930475086905, 0.052916183854770184, 0.049053688682889146, 0.047508690614136734, 0.7095403630745462, 0.04828118964851294, 0.04866743916570104, 0.05948242564696794, 0.05639242950946311, 0.05909617612977984, 0.08111239860950174, 0.08304364619544226, 0.2190034762456547, 0.2854383932020085, 0.4916956353804558, 0.4843568945538818, 0.7435303205870992, 0.7802240247199691, 0.8895326380842024, 0.9378138277327154, 0.9451525685592893, 0.9258400926998841, 0.798764001544998, 0.7682502896871379, 0.5241405948242565, 0.42332947083816147, 0.22672846658941676, 0.04866743916570104, 0.034376207029741215, 0.028968713789107765, 0.02742371572035535, 0.023174971031286212, 0.022788721514098106, 0.023561220548474315, 0.023174971031286212, 0.022402471996910003, 0.023561220548474315, 0.024719969100038625, 0.023174971031286212, 0.01853997682502897, 0.02394747006566242, 0.019698725376593278, 0.01892622634221707, 0.019312475859405175, 0.3522595596755504, 0.3480108149864813, 0.020084974893781384, 0.04171494785631518, 0.01853997682502897, 0.7412128234839707, 0.016222479721900347, 0.01738122827346466, 0.016994978756276556, 0.016994978756276556, 0.01660872923908845, 0.01660872923908845, 0.016222479721900347, 0.01660872923908845, 0.01660872923908845, 0.016994978756276556, 0.018153727307840865, 0.018153727307840865, 0.01853997682502897, 0.019312475859405175, 0.019312475859405175, 0.020084974893781384, 0.020471224410969487, 0.021629972962533797, 0.0220162224797219, 0.02394747006566242, 0.8794901506373117, 0.026651216685979143, 0.036693704132869834, 0.03746620316724604, 0.043646195442255696, 0.13093858632676708, 0.11973735032831209, 0.0552336809578988, 0.059868675164156046, 0.06257242178447277, 0.07145616067979915, 0.8814213982232523, 0.30359212050984935, 0.8702201622247973, 0.9061413673232909, 0.7960602549246814, 0.2078022402471997, 0.1552723059096176, 0.1544998068752414, 0.16145229818462728, 0.1657010428736964, 0.17458478176902278, 0.18269602162997295, 0.19273850907686366, 0.20278099652375434, 0.21552723059096177, 0.23754345307068367, 0.2541521823097721, 0.309772112784859, 0.3511008111239861, 0.38856701429123214, 0.41058323677095404, 0.4646581691772885, 0.5998455001931248, 0.8717651602935497], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Na_Pi_cotrans.gap.json b/pfam_gap_rates/Na_Pi_cotrans.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a9aae009d0d3efadc21d58af0f4053c50b9528ff
--- /dev/null
+++ b/pfam_gap_rates/Na_Pi_cotrans.gap.json
@@ -0,0 +1 @@
+{"family": "Na_Pi_cotrans", "n_seqs": 2739, "length": 154, "gap_rates": [0.5074844833880978, 0.4198612632347572, 0.40124132895217235, 0.34866739686016796, 0.3081416575392479, 0.29609346476816356, 0.2909821102592187, 0.2767433369843008, 0.26213946695874407, 0.25812340270171596, 0.2552026286966046, 0.25301204819277107, 0.24790069368382622, 0.24607520993063162, 0.24497991967871485, 0.24278933917488135, 0.24096385542168675, 0.8273092369477911, 0.2322015334063527, 0.21431179262504563, 0.19715224534501644, 0.17451624680540342, 0.15954728002920773, 0.14530850675428988, 0.13873676524278933, 0.13326031398320554, 0.1569916027747353, 0.14092734574662286, 0.11573566995253742, 0.11391018619934283, 0.16429353778751368, 0.0982110259218693, 0.08032128514056225, 0.05805038335158817, 0.043446513326031395, 0.029937933552391383, 0.011683096020445418, 0.008032128514056224, 0.007667031763417305, 0.007667031763417305, 0.007667031763417305, 0.007667031763417305, 0.0065717415115005475, 0.0065717415115005475, 0.0065717415115005475, 0.006206644760861628, 0.005841548010222709, 0.005841548010222709, 0.005841548010222709, 0.0065717415115005475, 0.006206644760861628, 0.006206644760861628, 0.0065717415115005475, 0.0065717415115005475, 0.006206644760861628, 0.004746257758305951, 0.004746257758305951, 0.004746257758305951, 0.00511135450894487, 0.004381161007667032, 0.004746257758305951, 0.004746257758305951, 0.004746257758305951, 0.004746257758305951, 0.02628696604600219, 0.005841548010222709, 0.00547645125958379, 0.00547645125958379, 0.00547645125958379, 0.00547645125958379, 0.00547645125958379, 0.005841548010222709, 0.005841548010222709, 0.005841548010222709, 0.005841548010222709, 0.005841548010222709, 0.00547645125958379, 0.00547645125958379, 0.006206644760861628, 0.0065717415115005475, 0.0065717415115005475, 0.0065717415115005475, 0.0065717415115005475, 0.006206644760861628, 0.0065717415115005475, 0.006936838262139467, 0.006936838262139467, 0.007301935012778387, 0.008397225264695144, 0.2661555312157722, 0.2661555312157722, 0.2657904344651333, 0.32238043081416573, 0.4089083607155896, 0.6257758305951077, 0.6896677619569186, 0.74662285505659, 0.8411829134720701, 0.8437385907265426, 0.8324205914567361, 0.7400511135450895, 0.6721431179262505, 0.601679445052939, 0.38809784592917124, 0.28148959474260676, 0.013143483023001095, 0.10916392844103688, 0.10952902519167579, 0.09857612267250822, 0.08470244614822928, 0.08725812340270171, 0.08251186564439576, 0.08214676889375684, 0.07594012413289522, 0.07740051113545089, 0.07046367287331143, 0.07520993063161738, 0.08141657539247901, 0.08762322015334063, 0.10076670317634173, 0.10916392844103688, 0.12413289521723257, 0.913837166849215, 0.19970792259948886, 0.2289156626506024, 0.28258488499452356, 0.35706462212486306, 0.47535596933187296, 0.5596933187294633, 0.5666301569916028, 0.5359620299379335, 0.5151515151515151, 0.50675428988682, 0.5001825483753195, 0.49981745162468055, 0.4979919678714859, 0.49981745162468055, 0.5012778386272362, 0.5031033223804308, 0.5049288061336255, 0.5063891931361811, 0.50675428988682, 0.5111354508944871, 0.5180722891566265, 0.5242789339174881, 0.5286600949251552, 0.5392479006936838, 0.5542168674698795, 0.5578678349762687, 0.5618838992332968, 0.5728368017524644, 0.5808689302665206, 0.5936473165388828, 0.6385542168674698], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Ndc80_HEC.gap.json b/pfam_gap_rates/Ndc80_HEC.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f4a75fafb8a423df0b816c3aae29307a50314cab
--- /dev/null
+++ b/pfam_gap_rates/Ndc80_HEC.gap.json
@@ -0,0 +1 @@
+{"family": "Ndc80_HEC", "n_seqs": 317, "length": 169, "gap_rates": [0.9116719242902208, 0.7697160883280757, 0.7318611987381703, 0.7129337539432177, 0.6908517350157729, 0.6876971608832808, 0.6782334384858044, 0.6246056782334385, 0.7697160883280757, 0.7854889589905363, 0.7949526813880127, 0.8927444794952681, 0.9495268138801262, 0.8359621451104101, 0.7886435331230284, 0.7823343848580442, 0.7634069400630915, 0.5993690851735016, 0.5678233438485805, 0.5205047318611987, 0.49842271293375395, 0.48264984227129337, 0.4605678233438486, 0.45425867507886436, 0.4353312302839117, 0.4195583596214511, 0.416403785488959, 0.4069400630914827, 0.3722397476340694, 0.3659305993690852, 0.33753943217665616, 0.3501577287066246, 0.2996845425867508, 0.26813880126182965, 0.24921135646687698, 0.1861198738170347, 0.17981072555205047, 0.17350157728706625, 0.20504731861198738, 0.1861198738170347, 0.17981072555205047, 0.14826498422712933, 0.13249211356466878, 0.12933753943217666, 0.12933753943217666, 0.12618296529968454, 0.12302839116719243, 0.11041009463722397, 0.09779179810725552, 0.0914826498422713, 0.08517350157728706, 0.08517350157728706, 0.08517350157728706, 0.08201892744479496, 0.07255520504731862, 0.07255520504731862, 0.07255520504731862, 0.07255520504731862, 0.07570977917981073, 0.07570977917981073, 0.08832807570977919, 0.08517350157728706, 0.17665615141955837, 0.1829652996845426, 0.6876971608832808, 0.7192429022082019, 0.7097791798107256, 0.6529968454258676, 0.17350157728706625, 0.12618296529968454, 0.08832807570977919, 0.08832807570977919, 0.08517350157728706, 0.0914826498422713, 0.10725552050473186, 0.0914826498422713, 0.07570977917981073, 0.0694006309148265, 0.06309148264984227, 0.05993690851735016, 0.05362776025236593, 0.050473186119873815, 0.050473186119873815, 0.0473186119873817, 0.05362776025236593, 0.050473186119873815, 0.0473186119873817, 0.04416403785488959, 0.04100946372239748, 0.04100946372239748, 0.04100946372239748, 0.04100946372239748, 0.04100946372239748, 0.04100946372239748, 0.9148264984227129, 0.04100946372239748, 0.03785488958990536, 0.11041009463722397, 0.09779179810725552, 0.04416403785488959, 0.04100946372239748, 0.04100946372239748, 0.1608832807570978, 0.8454258675078864, 0.9085173501577287, 0.6309148264984227, 0.03470031545741325, 0.031545741324921134, 0.031545741324921134, 0.03470031545741325, 0.03470031545741325, 0.031545741324921134, 0.031545741324921134, 0.031545741324921134, 0.028391167192429023, 0.025236593059936908, 0.025236593059936908, 0.025236593059936908, 0.025236593059936908, 0.028391167192429023, 0.028391167192429023, 0.028391167192429023, 0.031545741324921134, 0.031545741324921134, 0.031545741324921134, 0.5488958990536278, 0.5362776025236593, 0.03470031545741325, 0.025236593059936908, 0.025236593059936908, 0.025236593059936908, 0.025236593059936908, 0.028391167192429023, 0.028391167192429023, 0.028391167192429023, 0.028391167192429023, 0.0694006309148265, 0.03470031545741325, 0.031545741324921134, 0.03470031545741325, 0.24921135646687698, 0.031545741324921134, 0.028391167192429023, 0.028391167192429023, 0.028391167192429023, 0.031545741324921134, 0.03470031545741325, 0.03470031545741325, 0.03470031545741325, 0.03785488958990536, 0.03785488958990536, 0.03785488958990536, 0.03785488958990536, 0.03785488958990536, 0.04100946372239748, 0.05993690851735016, 0.0914826498422713, 0.1167192429022082, 0.14511041009463724, 0.19873817034700317, 0.2586750788643533, 0.305993690851735, 0.35962145110410093, 0.4227129337539432, 0.5141955835962145, 0.5993690851735016, 0.694006309148265, 0.7381703470031545, 0.8107255520504731], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Ndufs5.gap.json b/pfam_gap_rates/Ndufs5.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..4ca95748b16cba141d71cfef5253641a823850b4
--- /dev/null
+++ b/pfam_gap_rates/Ndufs5.gap.json
@@ -0,0 +1 @@
+{"family": "Ndufs5", "n_seqs": 140, "length": 97, "gap_rates": [0.8714285714285714, 0.8714285714285714, 0.8714285714285714, 0.8714285714285714, 0.8714285714285714, 0.8714285714285714, 0.8714285714285714, 0.8714285714285714, 0.8642857142857143, 0.8642857142857143, 0.8642857142857143, 0.8642857142857143, 0.8642857142857143, 0.8571428571428571, 0.8571428571428571, 0.8571428571428571, 0.8571428571428571, 0.8571428571428571, 0.85, 0.85, 0.8428571428571429, 0.8357142857142857, 0.8285714285714286, 0.8142857142857143, 0.8, 0.7928571428571428, 0.6785714285714286, 0.6428571428571429, 0.5357142857142857, 0.32142857142857145, 0.12142857142857143, 0.07142857142857142, 0.06428571428571428, 0.05714285714285714, 0.04285714285714286, 0.04285714285714286, 0.21428571428571427, 0.20714285714285716, 0.19285714285714287, 0.007142857142857143, 0.014285714285714285, 0.007142857142857143, 0.014285714285714285, 0.05, 0.07142857142857142, 0.95, 0.06428571428571428, 0.05714285714285714, 0.04285714285714286, 0.02857142857142857, 0.014285714285714285, 0.007142857142857143, 0.007142857142857143, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.014285714285714285, 0.02142857142857143, 0.02142857142857143, 0.02857142857142857, 0.02857142857142857, 0.02857142857142857, 0.05714285714285714, 0.10714285714285714, 0.12142857142857143, 0.15714285714285714, 0.2, 0.2785714285714286, 0.32857142857142857, 0.4357142857142857, 0.5357142857142857, 0.55, 0.6, 0.65, 0.6714285714285714, 0.7285714285714285, 0.7571428571428571, 0.9071428571428571], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/NeuB.gap.json b/pfam_gap_rates/NeuB.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..105aebfaa9cd81bcb0f30e7247dd9e82bd94eed1
--- /dev/null
+++ b/pfam_gap_rates/NeuB.gap.json
@@ -0,0 +1 @@
+{"family": "NeuB", "n_seqs": 976, "length": 256, "gap_rates": [0.26741803278688525, 0.13012295081967212, 0.10758196721311475, 0.09528688524590163, 0.0932377049180328, 0.09221311475409837, 0.09016393442622951, 0.08913934426229508, 0.08709016393442623, 0.08401639344262295, 0.07889344262295082, 0.0625, 0.05942622950819672, 0.05430327868852459, 0.05327868852459016, 0.05327868852459016, 0.05327868852459016, 0.05430327868852459, 0.05430327868852459, 0.05225409836065574, 0.05225409836065574, 0.05225409836065574, 0.05430327868852459, 0.05430327868852459, 0.05430327868852459, 0.05430327868852459, 0.28790983606557374, 0.11782786885245902, 0.21209016393442623, 0.18135245901639344, 0.1362704918032787, 0.14344262295081966, 0.2520491803278688, 0.2182377049180328, 0.1711065573770492, 0.15778688524590165, 0.1567622950819672, 0.15368852459016394, 0.8125, 0.9129098360655737, 0.694672131147541, 0.1915983606557377, 0.09938524590163934, 0.08299180327868852, 0.11577868852459017, 0.05327868852459016, 0.04815573770491803, 0.04815573770491803, 0.04610655737704918, 0.04610655737704918, 0.045081967213114756, 0.0430327868852459, 0.042008196721311473, 0.0430327868852459, 0.0430327868852459, 0.042008196721311473, 0.042008196721311473, 0.042008196721311473, 0.042008196721311473, 0.039959016393442626, 0.039959016393442626, 0.039959016393442626, 0.039959016393442626, 0.0389344262295082, 0.0389344262295082, 0.0389344262295082, 0.0389344262295082, 0.0389344262295082, 0.0389344262295082, 0.0389344262295082, 0.039959016393442626, 0.039959016393442626, 0.039959016393442626, 0.039959016393442626, 0.0389344262295082, 0.0389344262295082, 0.039959016393442626, 0.0389344262295082, 0.0389344262295082, 0.0389344262295082, 0.0389344262295082, 0.0389344262295082, 0.03790983606557377, 0.036885245901639344, 0.036885245901639344, 0.036885245901639344, 0.036885245901639344, 0.036885245901639344, 0.9436475409836066, 0.060450819672131145, 0.03790983606557377, 0.0389344262295082, 0.08504098360655737, 0.036885245901639344, 0.036885245901639344, 0.036885245901639344, 0.036885245901639344, 0.036885245901639344, 0.035860655737704916, 0.036885245901639344, 0.03790983606557377, 0.036885245901639344, 0.036885245901639344, 0.036885245901639344, 0.036885245901639344, 0.036885245901639344, 0.035860655737704916, 0.03483606557377049, 0.03483606557377049, 0.03483606557377049, 0.03483606557377049, 0.03483606557377049, 0.03483606557377049, 0.03483606557377049, 0.035860655737704916, 0.035860655737704916, 0.03483606557377049, 0.03483606557377049, 0.03483606557377049, 0.035860655737704916, 0.035860655737704916, 0.035860655737704916, 0.035860655737704916, 0.035860655737704916, 0.036885245901639344, 0.035860655737704916, 0.035860655737704916, 0.035860655737704916, 0.035860655737704916, 0.035860655737704916, 0.035860655737704916, 0.036885245901639344, 0.03790983606557377, 0.03790983606557377, 0.0389344262295082, 0.03790983606557377, 0.036885245901639344, 0.03790983606557377, 0.03790983606557377, 0.9067622950819673, 0.9385245901639344, 0.9487704918032787, 0.9497950819672131, 0.9497950819672131, 0.9395491803278688, 0.9364754098360656, 0.8852459016393442, 0.4077868852459016, 0.1598360655737705, 0.13934426229508196, 0.03790983606557377, 0.035860655737704916, 0.03483606557377049, 0.03381147540983607, 0.03278688524590164, 0.03278688524590164, 0.031762295081967214, 0.030737704918032786, 0.030737704918032786, 0.030737704918032786, 0.030737704918032786, 0.031762295081967214, 0.031762295081967214, 0.03278688524590164, 0.03278688524590164, 0.03278688524590164, 0.03278688524590164, 0.03381147540983607, 0.03381147540983607, 0.03483606557377049, 0.03483606557377049, 0.03483606557377049, 0.03483606557377049, 0.035860655737704916, 0.035860655737704916, 0.03483606557377049, 0.03381147540983607, 0.03483606557377049, 0.036885245901639344, 0.035860655737704916, 0.04405737704918033, 0.039959016393442626, 0.03278688524590164, 0.03483606557377049, 0.7069672131147541, 0.036885245901639344, 0.03381147540983607, 0.03381147540983607, 0.03381147540983607, 0.03483606557377049, 0.035860655737704916, 0.035860655737704916, 0.035860655737704916, 0.035860655737704916, 0.036885245901639344, 0.9375, 0.8985655737704918, 0.036885245901639344, 0.03790983606557377, 0.0389344262295082, 0.03790983606557377, 0.0389344262295082, 0.03790983606557377, 0.03790983606557377, 0.03790983606557377, 0.03790983606557377, 0.036885245901639344, 0.03483606557377049, 0.035860655737704916, 0.035860655737704916, 0.035860655737704916, 0.035860655737704916, 0.035860655737704916, 0.035860655737704916, 0.036885245901639344, 0.036885245901639344, 0.035860655737704916, 0.03483606557377049, 0.035860655737704916, 0.035860655737704916, 0.035860655737704916, 0.035860655737704916, 0.039959016393442626, 0.0389344262295082, 0.040983606557377046, 0.040983606557377046, 0.04918032786885246, 0.042008196721311473, 0.0389344262295082, 0.039959016393442626, 0.040983606557377046, 0.040983606557377046, 0.045081967213114756, 0.0430327868852459, 0.0430327868852459, 0.0430327868852459, 0.04405737704918033, 0.04405737704918033, 0.04405737704918033, 0.04405737704918033, 0.045081967213114756, 0.0471311475409836, 0.04918032786885246, 0.04918032786885246, 0.04918032786885246, 0.05327868852459016, 0.05635245901639344, 0.06352459016393443, 0.06762295081967214, 0.08709016393442623, 0.10040983606557377, 0.11885245901639344, 0.1598360655737705, 0.2612704918032787, 0.5522540983606558, 0.701844262295082], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Neur_chan_LBD.gap.json b/pfam_gap_rates/Neur_chan_LBD.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..24b234bd7820129b4375af226f036268da668590
--- /dev/null
+++ b/pfam_gap_rates/Neur_chan_LBD.gap.json
@@ -0,0 +1 @@
+{"family": "Neur_chan_LBD", "n_seqs": 3906, "length": 228, "gap_rates": [0.8883768561187916, 0.6746031746031746, 0.5512032770097286, 0.48182283666154635, 0.460573476702509, 0.4441884280593958, 0.4336917562724014, 0.4211469534050179, 0.40757808499743986, 0.3824884792626728, 0.36533538146441374, 0.8942652329749103, 0.8666154633896569, 0.3579109062980031, 0.3548387096774194, 0.34997439836149513, 0.34459805427547363, 0.3358934971838198, 0.3305171530977983, 0.32309267793138763, 0.3545826932923707, 0.5453149001536098, 0.37992831541218636, 0.3573988735279058, 0.3118279569892473, 0.2859703020993344, 0.28008192524321557, 0.27291346646185355, 0.2670250896057348, 0.26344086021505375, 0.2613927291346646, 0.2590885816692268, 0.2572964669738863, 0.2524321556579621, 0.25140809011776755, 0.24807987711213517, 0.24833589349718382, 0.25960061443932414, 0.2570404505888377, 0.2519201228878648, 0.24551971326164876, 0.2411674347158218, 0.2345110087045571, 0.2339989759344598, 0.23323092677931387, 0.22836661546338966, 0.2107014848950333, 0.2060931899641577, 0.19329237071172556, 0.19226830517153098, 0.18381976446492576, 0.18202764976958524, 0.17613927291346645, 0.17076292882744495, 0.1651305683563748, 0.15873015873015872, 0.14618535586277523, 0.13645673323092677, 0.130568356374808, 0.130568356374808, 0.12980030721966207, 0.1295442908346134, 0.12928827444956478, 0.12724014336917563, 0.12698412698412698, 0.12724014336917563, 0.13287250384024576, 0.21428571428571427, 0.21249359959037378, 0.22043010752688172, 0.35560675883256526, 0.26088069636456734, 0.20686123911930362, 0.17588325652841783, 0.14797747055811572, 0.13645673323092677, 0.13236047107014848, 0.13287250384024576, 0.13287250384024576, 0.13645673323092677, 0.14234511008704556, 0.12493599590373784, 0.7071172555043522, 0.7301587301587301, 0.6525857654889913, 0.12237583205325141, 0.12186379928315412, 0.12186379928315412, 0.12135176651305683, 0.11981566820276497, 0.12135176651305683, 0.12186379928315412, 0.12160778289810548, 0.12263184843830005, 0.12263184843830005, 0.12211981566820276, 0.5929339477726574, 0.12135176651305683, 0.12672811059907835, 0.12493599590373784, 0.12544802867383512, 0.12621607782898106, 0.12724014336917563, 0.12724014336917563, 0.12775217613927292, 0.13389656938044034, 0.4672299027137737, 0.17895545314900155, 0.14106502816180236, 0.1259600614439324, 0.12135176651305683, 0.1169994879672299, 0.11392729134664618, 0.11418330773169483, 0.11495135688684076, 0.11367127496159754, 0.11392729134664618, 0.1134152585765489, 0.11367127496159754, 0.11495135688684076, 0.11367127496159754, 0.1134152585765489, 0.11495135688684076, 0.1152073732718894, 0.11776753712237584, 0.12314388120839734, 0.1246799795186892, 0.1264720942140297, 0.12698412698412698, 0.12928827444956478, 0.130568356374808, 0.1318484383000512, 0.13159242191500256, 0.12570404505888377, 0.12621607782898106, 0.12672811059907835, 0.12544802867383512, 0.12852022529441884, 0.12980030721966207, 0.12928827444956478, 0.12903225806451613, 0.12749615975422426, 0.12698412698412698, 0.12800819252432155, 0.12724014336917563, 0.12903225806451613, 0.12775217613927292, 0.12672811059907835, 0.1295442908346134, 0.13312852022529442, 0.14336917562724014, 0.15412186379928317, 0.15821812596006143, 0.1625704045058884, 0.16999487967229904, 0.17229902713773682, 0.1733230926779314, 0.17716333845366103, 0.1774193548387097, 0.17844342037890426, 0.18125960061443933, 0.18151561699948796, 0.1827956989247312, 0.1863799283154122, 0.18996415770609318, 0.19457245263696876, 0.4564772145417307, 0.49948796722990274, 0.5468509984639017, 0.8172043010752689, 0.9290834613415259, 0.9467485919098823, 0.9370199692780338, 0.8850486431131592, 0.7112135176651305, 0.547363031233999, 0.5284178187403994, 0.4969278033794163, 0.4429083461341526, 0.2698412698412698, 0.2465437788018433, 0.22606246799795188, 0.22478238607270865, 0.2263184843830005, 0.22785458269329237, 0.2291346646185356, 0.22964669738863286, 0.23323092677931387, 0.23860727086533537, 0.2403993855606759, 0.2470558115719406, 0.25320020481310807, 0.2667690732206861, 0.26497695852534564, 0.27060931899641577, 0.2721454173067076, 0.2767537122375832, 0.5207373271889401, 0.5094726062467998, 0.47235023041474655, 0.45980542754736303, 0.30440348182283666, 0.3307731694828469, 0.3251408090117768, 0.31771633384536613, 0.4147465437788018, 0.36072708653353813, 0.35176651305683565, 0.3735279057859703, 0.3673835125448029, 0.36226318484383, 0.36226318484383, 0.3835125448028674, 0.6321044546850998, 0.6093189964157706, 0.5852534562211982, 0.5660522273425499, 0.5542754736303124, 0.5409626216077829, 0.33384536610343063, 0.3343573988735279, 0.3361495135688684, 0.3384536610343062, 0.3397337429595494, 0.3433179723502304, 0.3497183819764465, 0.4019457245263697, 0.7265745007680492], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Neuro_bHLH.gap.json b/pfam_gap_rates/Neuro_bHLH.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..5247a33c38aa689c8261d766f242bdd9705969a2
--- /dev/null
+++ b/pfam_gap_rates/Neuro_bHLH.gap.json
@@ -0,0 +1 @@
+{"family": "Neuro_bHLH", "n_seqs": 119, "length": 143, "gap_rates": [0.13445378151260504, 0.07563025210084033, 0.05042016806722689, 0.04201680672268908, 0.03361344537815126, 0.03361344537815126, 0.03361344537815126, 0.03361344537815126, 0.03361344537815126, 0.025210084033613446, 0.025210084033613446, 0.01680672268907563, 0.01680672268907563, 0.01680672268907563, 0.01680672268907563, 0.01680672268907563, 0.01680672268907563, 0.01680672268907563, 0.01680672268907563, 0.008403361344537815, 0.008403361344537815, 0.008403361344537815, 0.008403361344537815, 0.008403361344537815, 0.01680672268907563, 0.01680672268907563, 0.01680672268907563, 0.01680672268907563, 0.01680672268907563, 0.01680672268907563, 0.01680672268907563, 0.03361344537815126, 0.058823529411764705, 0.058823529411764705, 0.058823529411764705, 0.058823529411764705, 0.058823529411764705, 0.058823529411764705, 0.058823529411764705, 0.07563025210084033, 0.8823529411764706, 0.9495798319327731, 0.8739495798319328, 0.10084033613445378, 0.11764705882352941, 0.11764705882352941, 0.12605042016806722, 0.13445378151260504, 0.14285714285714285, 0.8487394957983193, 0.9327731092436975, 0.8235294117647058, 0.18487394957983194, 0.17647058823529413, 0.2184873949579832, 0.6050420168067226, 0.3697478991596639, 0.33613445378151263, 0.25210084033613445, 0.3025210084033613, 0.9327731092436975, 0.42857142857142855, 0.36134453781512604, 0.3277310924369748, 0.17647058823529413, 0.17647058823529413, 0.19327731092436976, 0.18487394957983194, 0.7899159663865546, 0.17647058823529413, 0.17647058823529413, 0.17647058823529413, 0.17647058823529413, 0.21008403361344538, 0.21008403361344538, 0.9243697478991597, 0.9411764705882353, 0.7983193277310925, 0.24369747899159663, 0.226890756302521, 0.23529411764705882, 0.23529411764705882, 0.25210084033613445, 0.2605042016806723, 0.2857142857142857, 0.2857142857142857, 0.29411764705882354, 0.5546218487394958, 0.40336134453781514, 0.42016806722689076, 0.2857142857142857, 0.2773109243697479, 0.2773109243697479, 0.6050420168067226, 0.29411764705882354, 0.29411764705882354, 0.7142857142857143, 0.9243697478991597, 0.7142857142857143, 0.3025210084033613, 0.36134453781512604, 0.6638655462184874, 0.31092436974789917, 0.33613445378151263, 0.36134453781512604, 0.36134453781512604, 0.33613445378151263, 0.6554621848739496, 0.3277310924369748, 0.3277310924369748, 0.33613445378151263, 0.46218487394957986, 0.47058823529411764, 0.9327731092436975, 0.8739495798319328, 0.4957983193277311, 0.44537815126050423, 0.33613445378151263, 0.31932773109243695, 0.31932773109243695, 0.3445378151260504, 0.3277310924369748, 0.3277310924369748, 0.31932773109243695, 0.3277310924369748, 0.33613445378151263, 0.33613445378151263, 0.3445378151260504, 0.3697478991596639, 0.36134453781512604, 0.36134453781512604, 0.36134453781512604, 0.8487394957983193, 0.36134453781512604, 0.36134453781512604, 0.36134453781512604, 0.36134453781512604, 0.3697478991596639, 0.37815126050420167, 0.3865546218487395, 0.3865546218487395, 0.3865546218487395, 0.40336134453781514], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/NifU_N.gap.json b/pfam_gap_rates/NifU_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..72a967193b0947e84b498f8680cd777734601abc
--- /dev/null
+++ b/pfam_gap_rates/NifU_N.gap.json
@@ -0,0 +1 @@
+{"family": "NifU_N", "n_seqs": 2610, "length": 132, "gap_rates": [0.6854406130268199, 0.18773946360153257, 0.17164750957854405, 0.15478927203065135, 0.1409961685823755, 0.12681992337164752, 0.11532567049808429, 0.11264367816091954, 0.110727969348659, 0.10919540229885058, 0.10651340996168582, 0.10459770114942529, 0.10383141762452107, 0.10268199233716475, 0.10114942528735632, 0.10038314176245211, 0.1, 0.09923371647509578, 0.10038314176245211, 0.0950191570881226, 0.09272030651340996, 0.09195402298850575, 0.09195402298850575, 0.389272030651341, 0.6934865900383141, 0.946360153256705, 0.6743295019157088, 0.3831417624521073, 0.08505747126436781, 0.07203065134099616, 0.07049808429118774, 0.06934865900383141, 0.06704980842911877, 0.0685823754789272, 0.061685823754789273, 0.057088122605363986, 0.05478927203065134, 0.05517241379310345, 0.054022988505747126, 0.044444444444444446, 0.028735632183908046, 0.020689655172413793, 0.01992337164750958, 0.021455938697318006, 0.01992337164750958, 0.018773946360153258, 0.01992337164750958, 0.019157088122605363, 0.020306513409961684, 0.48659003831417624, 0.7425287356321839, 0.02950191570881226, 0.01839080459770115, 0.01839080459770115, 0.019157088122605363, 0.01839080459770115, 0.017241379310344827, 0.017241379310344827, 0.016475095785440614, 0.016475095785440614, 0.016475095785440614, 0.01685823754789272, 0.017241379310344827, 0.017241379310344827, 0.017241379310344827, 0.01800766283524904, 0.017241379310344827, 0.016475095785440614, 0.01685823754789272, 0.016475095785440614, 0.016475095785440614, 0.016475095785440614, 0.016475095785440614, 0.01685823754789272, 0.015708812260536397, 0.015708812260536397, 0.015708812260536397, 0.015708812260536397, 0.01532567049808429, 0.016475095785440614, 0.01685823754789272, 0.016475095785440614, 0.018773946360153258, 0.020306513409961684, 0.020689655172413793, 0.022988505747126436, 0.15938697318007664, 0.13908045977011493, 0.0524904214559387, 0.07279693486590039, 0.1053639846743295, 0.10114942528735632, 0.10651340996168582, 0.09616858237547893, 0.08199233716475096, 0.08199233716475096, 0.08275862068965517, 0.08275862068965517, 0.10842911877394636, 0.4126436781609195, 0.9371647509578545, 0.9467432950191571, 0.8528735632183908, 0.18773946360153257, 0.14482758620689656, 0.12911877394636015, 0.12911877394636015, 0.1314176245210728, 0.13448275862068965, 0.13295019157088123, 0.13448275862068965, 0.1360153256704981, 0.13984674329501914, 0.1421455938697318, 0.1425287356321839, 0.14482758620689656, 0.1475095785440613, 0.1475095785440613, 0.1475095785440613, 0.14980842911877396, 0.1524904214559387, 0.15900383141762453, 0.16283524904214558, 0.17662835249042147, 0.19655172413793104, 0.20919540229885059, 0.21455938697318008, 0.22413793103448276, 0.2628352490421456, 0.3099616858237548, 0.5432950191570881, 0.7590038314176245], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/NikR_C.gap.json b/pfam_gap_rates/NikR_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..1f795c1143f8841c53fa19ecd423a0fe273667ef
--- /dev/null
+++ b/pfam_gap_rates/NikR_C.gap.json
@@ -0,0 +1 @@
+{"family": "NikR_C", "n_seqs": 356, "length": 77, "gap_rates": [0.2893258426966292, 0.12078651685393259, 0.11235955056179775, 0.10112359550561797, 0.08146067415730338, 0.07584269662921349, 0.07303370786516854, 0.0702247191011236, 0.07303370786516854, 0.0702247191011236, 0.14887640449438203, 0.1151685393258427, 0.07303370786516854, 0.05337078651685393, 0.042134831460674156, 0.03089887640449438, 0.02247191011235955, 0.019662921348314606, 0.016853932584269662, 0.011235955056179775, 0.008426966292134831, 0.008426966292134831, 0.008426966292134831, 0.0056179775280898875, 0.0028089887640449437, 0.0028089887640449437, 0.008426966292134831, 0.0028089887640449437, 0.0028089887640449437, 0.0028089887640449437, 0.0028089887640449437, 0.0028089887640449437, 0.0028089887640449437, 0.0028089887640449437, 0.0028089887640449437, 0.0056179775280898875, 0.0056179775280898875, 0.025280898876404494, 0.008426966292134831, 0.0056179775280898875, 0.008426966292134831, 0.042134831460674156, 0.0056179775280898875, 0.0028089887640449437, 0.0028089887640449437, 0.0028089887640449437, 0.0028089887640449437, 0.0028089887640449437, 0.0028089887640449437, 0.0056179775280898875, 0.008426966292134831, 0.008426966292134831, 0.008426966292134831, 0.008426966292134831, 0.011235955056179775, 0.011235955056179775, 0.011235955056179775, 0.011235955056179775, 0.011235955056179775, 0.011235955056179775, 0.011235955056179775, 0.011235955056179775, 0.011235955056179775, 0.014044943820224719, 0.019662921348314606, 0.02247191011235955, 0.033707865168539325, 0.03651685393258427, 0.0449438202247191, 0.047752808988764044, 0.11797752808988764, 0.13202247191011235, 0.13764044943820225, 0.14606741573033707, 0.16853932584269662, 0.29775280898876405, 0.7219101123595506], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Nipped-B_C.gap.json b/pfam_gap_rates/Nipped-B_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..3e04b69cf6a3501c39ec3a5dc739593781dd7e03
--- /dev/null
+++ b/pfam_gap_rates/Nipped-B_C.gap.json
@@ -0,0 +1 @@
+{"family": "Nipped-B_C", "n_seqs": 305, "length": 217, "gap_rates": [0.419672131147541, 0.21967213114754097, 0.12459016393442623, 0.09836065573770492, 0.08524590163934426, 0.08196721311475409, 0.08196721311475409, 0.07868852459016394, 0.07868852459016394, 0.07868852459016394, 0.07868852459016394, 0.07213114754098361, 0.07213114754098361, 0.06885245901639345, 0.06885245901639345, 0.06557377049180328, 0.05901639344262295, 0.05245901639344262, 0.05901639344262295, 0.05245901639344262, 0.04590163934426229, 0.04590163934426229, 0.04262295081967213, 0.04262295081967213, 0.04590163934426229, 0.04918032786885246, 0.04918032786885246, 0.04918032786885246, 0.04918032786885246, 0.04918032786885246, 0.04918032786885246, 0.04590163934426229, 0.04262295081967213, 0.04262295081967213, 0.04918032786885246, 0.04590163934426229, 0.04590163934426229, 0.04590163934426229, 0.04590163934426229, 0.04590163934426229, 0.04590163934426229, 0.04590163934426229, 0.04590163934426229, 0.03934426229508197, 0.036065573770491806, 0.03934426229508197, 0.04262295081967213, 0.04262295081967213, 0.04262295081967213, 0.04590163934426229, 0.04590163934426229, 0.04262295081967213, 0.04262295081967213, 0.04262295081967213, 0.03934426229508197, 0.04262295081967213, 0.03934426229508197, 0.04262295081967213, 0.04590163934426229, 0.03934426229508197, 0.03934426229508197, 0.03934426229508197, 0.03934426229508197, 0.03934426229508197, 0.03934426229508197, 0.03934426229508197, 0.03934426229508197, 0.03934426229508197, 0.03934426229508197, 0.03934426229508197, 0.04262295081967213, 0.04262295081967213, 0.04590163934426229, 0.04590163934426229, 0.04590163934426229, 0.04918032786885246, 0.04918032786885246, 0.04918032786885246, 0.04918032786885246, 0.04590163934426229, 0.04590163934426229, 0.04590163934426229, 0.05245901639344262, 0.05573770491803279, 0.05573770491803279, 0.05573770491803279, 0.05573770491803279, 0.05573770491803279, 0.05245901639344262, 0.04918032786885246, 0.05245901639344262, 0.04918032786885246, 0.04918032786885246, 0.04918032786885246, 0.04918032786885246, 0.04918032786885246, 0.1901639344262295, 0.2098360655737705, 0.4721311475409836, 0.32786885245901637, 0.1180327868852459, 0.10819672131147541, 0.09180327868852459, 0.09508196721311475, 0.10163934426229508, 0.13442622950819672, 0.5081967213114754, 0.5442622950819672, 0.5704918032786885, 0.5278688524590164, 0.7934426229508197, 0.819672131147541, 0.8426229508196721, 0.8491803278688524, 0.8655737704918033, 0.8754098360655738, 0.9147540983606557, 0.9311475409836065, 0.940983606557377, 0.9475409836065574, 0.9344262295081968, 0.9278688524590164, 0.9016393442622951, 0.8721311475409836, 0.8524590163934426, 0.8491803278688524, 0.8360655737704918, 0.7967213114754098, 0.780327868852459, 0.43934426229508194, 0.380327868852459, 0.34098360655737703, 0.10491803278688525, 0.08852459016393442, 0.08524590163934426, 0.07868852459016394, 0.07213114754098361, 0.06557377049180328, 0.06557377049180328, 0.06885245901639345, 0.06885245901639345, 0.06557377049180328, 0.06557377049180328, 0.06557377049180328, 0.07868852459016394, 0.07213114754098361, 0.7573770491803279, 0.08196721311475409, 0.09180327868852459, 0.07540983606557378, 0.06885245901639345, 0.06885245901639345, 0.06885245901639345, 0.06885245901639345, 0.06885245901639345, 0.06885245901639345, 0.07213114754098361, 0.07213114754098361, 0.07213114754098361, 0.07213114754098361, 0.06885245901639345, 0.06885245901639345, 0.06885245901639345, 0.06885245901639345, 0.06885245901639345, 0.08196721311475409, 0.5704918032786885, 0.6754098360655738, 0.921311475409836, 0.9475409836065574, 0.940983606557377, 0.7213114754098361, 0.6459016393442623, 0.5606557377049181, 0.5540983606557377, 0.5409836065573771, 0.47540983606557374, 0.3442622950819672, 0.29508196721311475, 0.2262295081967213, 0.10163934426229508, 0.09180327868852459, 0.08524590163934426, 0.08196721311475409, 0.07868852459016394, 0.07868852459016394, 0.07868852459016394, 0.06885245901639345, 0.06885245901639345, 0.06885245901639345, 0.06885245901639345, 0.06885245901639345, 0.06885245901639345, 0.06885245901639345, 0.06885245901639345, 0.06885245901639345, 0.06885245901639345, 0.06885245901639345, 0.06885245901639345, 0.07213114754098361, 0.07213114754098361, 0.07213114754098361, 0.07868852459016394, 0.07540983606557378, 0.07540983606557378, 0.07540983606557378, 0.07540983606557378, 0.07868852459016394, 0.08196721311475409, 0.08196721311475409, 0.08524590163934426, 0.09180327868852459, 0.09180327868852459, 0.10819672131147541, 0.14426229508196722, 0.32131147540983607, 0.6950819672131148], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Nodulin-like.gap.json b/pfam_gap_rates/Nodulin-like.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..3e888c589eb48a4b9c25c977d8d70b2ffb12a2dc
--- /dev/null
+++ b/pfam_gap_rates/Nodulin-like.gap.json
@@ -0,0 +1 @@
+{"family": "Nodulin-like", "n_seqs": 668, "length": 259, "gap_rates": [0.32934131736526945, 0.3023952095808383, 0.2679640718562874, 0.23952095808383234, 0.20209580838323354, 0.19161676646706588, 0.18862275449101795, 0.18712574850299402, 0.18263473053892215, 0.1781437125748503, 0.17664670658682635, 0.17065868263473055, 0.17065868263473055, 0.1631736526946108, 0.15868263473053892, 0.1601796407185629, 0.15119760479041916, 0.1497005988023952, 0.14820359281437126, 0.14520958083832336, 0.14520958083832336, 0.14520958083832336, 0.1437125748502994, 0.1437125748502994, 0.1437125748502994, 0.1437125748502994, 0.1437125748502994, 0.1437125748502994, 0.14520958083832336, 0.1437125748502994, 0.1467065868263473, 0.14520958083832336, 0.14520958083832336, 0.1437125748502994, 0.1437125748502994, 0.1437125748502994, 0.14221556886227546, 0.14221556886227546, 0.14221556886227546, 0.1407185628742515, 0.1407185628742515, 0.1407185628742515, 0.14221556886227546, 0.14221556886227546, 0.13922155688622753, 0.13922155688622753, 0.1377245508982036, 0.1377245508982036, 0.1377245508982036, 0.13922155688622753, 0.1407185628742515, 0.13922155688622753, 0.13922155688622753, 0.1437125748502994, 0.14221556886227546, 0.14221556886227546, 0.13922155688622753, 0.13922155688622753, 0.1377245508982036, 0.13922155688622753, 0.13922155688622753, 0.1437125748502994, 0.14221556886227546, 0.14221556886227546, 0.1377245508982036, 0.1407185628742515, 0.13922155688622753, 0.13922155688622753, 0.14520958083832336, 0.1407185628742515, 0.13922155688622753, 0.1377245508982036, 0.13922155688622753, 0.13922155688622753, 0.13922155688622753, 0.13922155688622753, 0.13922155688622753, 0.1407185628742515, 0.1407185628742515, 0.1437125748502994, 0.14221556886227546, 0.14221556886227546, 0.1467065868263473, 0.1467065868263473, 0.1467065868263473, 0.14820359281437126, 0.15119760479041916, 0.15269461077844312, 0.15119760479041916, 0.14820359281437126, 0.1721556886227545, 0.1721556886227545, 0.3083832335329341, 0.15269461077844312, 0.13922155688622753, 0.1377245508982036, 0.1437125748502994, 0.13023952095808383, 0.11976047904191617, 0.11826347305389222, 0.12275449101796407, 0.12574850299401197, 0.11976047904191617, 0.11526946107784432, 0.11377245508982035, 0.11377245508982035, 0.11976047904191617, 0.11826347305389222, 0.11377245508982035, 0.11826347305389222, 0.11377245508982035, 0.11526946107784432, 0.11526946107784432, 0.11676646706586827, 0.1122754491017964, 0.11526946107784432, 0.11676646706586827, 0.1122754491017964, 0.1092814371257485, 0.1092814371257485, 0.11377245508982035, 0.10778443113772455, 0.1062874251497006, 0.1062874251497006, 0.1062874251497006, 0.1062874251497006, 0.10479041916167664, 0.10329341317365269, 0.10329341317365269, 0.10179640718562874, 0.10179640718562874, 0.10329341317365269, 0.10179640718562874, 0.10329341317365269, 0.10329341317365269, 0.10329341317365269, 0.10329341317365269, 0.10778443113772455, 0.10778443113772455, 0.1062874251497006, 0.1062874251497006, 0.10778443113772455, 0.10778443113772455, 0.10778443113772455, 0.10778443113772455, 0.10778443113772455, 0.1092814371257485, 0.1092814371257485, 0.1092814371257485, 0.1092814371257485, 0.1092814371257485, 0.11077844311377245, 0.11077844311377245, 0.11826347305389222, 0.12125748502994012, 0.12425149700598802, 0.12425149700598802, 0.8488023952095808, 0.9266467065868264, 0.8922155688622755, 0.8008982035928144, 0.12874251497005987, 0.13922155688622753, 0.12874251497005987, 0.12724550898203593, 0.12574850299401197, 0.12724550898203593, 0.12724550898203593, 0.12125748502994012, 0.12125748502994012, 0.11976047904191617, 0.12125748502994012, 0.12275449101796407, 0.12574850299401197, 0.12724550898203593, 0.12425149700598802, 0.12425149700598802, 0.12874251497005987, 0.12574850299401197, 0.12874251497005987, 0.13323353293413173, 0.13023952095808383, 0.1347305389221557, 0.13922155688622753, 0.1407185628742515, 0.14221556886227546, 0.1437125748502994, 0.14520958083832336, 0.27395209580838326, 0.5254491017964071, 0.6407185628742516, 0.8398203592814372, 0.9311377245508982, 0.9491017964071856, 0.8892215568862275, 0.812874251497006, 0.5149700598802395, 0.41317365269461076, 0.3083832335329341, 0.2634730538922156, 0.25449101796407186, 0.25149700598802394, 0.25, 0.25149700598802394, 0.24850299401197604, 0.25149700598802394, 0.25149700598802394, 0.25299401197604793, 0.25299401197604793, 0.25299401197604793, 0.25299401197604793, 0.25449101796407186, 0.25449101796407186, 0.25898203592814373, 0.2559880239520958, 0.2559880239520958, 0.2559880239520958, 0.25748502994011974, 0.25748502994011974, 0.25748502994011974, 0.25898203592814373, 0.25898203592814373, 0.25898203592814373, 0.25898203592814373, 0.2619760479041916, 0.2619760479041916, 0.2634730538922156, 0.344311377245509, 0.3338323353293413, 0.2934131736526946, 0.27994011976047906, 0.27245508982035926, 0.312874251497006, 0.30538922155688625, 0.3008982035928144, 0.28592814371257486, 0.2904191616766467, 0.2934131736526946, 0.2874251497005988, 0.28592814371257486, 0.29191616766467066, 0.29191616766467066, 0.2934131736526946, 0.2904191616766467, 0.28892215568862273, 0.2949101796407186, 0.4086826347305389, 0.38173652694610777, 0.3203592814371258, 0.2904191616766467, 0.29191616766467066, 0.2934131736526946, 0.3068862275449102, 0.3143712574850299, 0.32335329341317365, 0.3338323353293413, 0.35479041916167664, 0.3787425149700599, 0.6077844311377245], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Nop.gap.json b/pfam_gap_rates/Nop.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..1b706424e5ce8a26765303eb21a67a5b3d083ad8
--- /dev/null
+++ b/pfam_gap_rates/Nop.gap.json
@@ -0,0 +1 @@
+{"family": "Nop", "n_seqs": 1232, "length": 259, "gap_rates": [0.5016233766233766, 0.22077922077922077, 0.15665584415584416, 0.1444805194805195, 0.1387987012987013, 0.1266233766233766, 0.12175324675324675, 0.12175324675324675, 0.12012987012987013, 0.11525974025974026, 0.11363636363636363, 0.11282467532467533, 0.11282467532467533, 0.11201298701298701, 0.11201298701298701, 0.1112012987012987, 0.1112012987012987, 0.1112012987012987, 0.1112012987012987, 0.10957792207792208, 0.10876623376623376, 0.10795454545454546, 0.10795454545454546, 0.10795454545454546, 0.10714285714285714, 0.10714285714285714, 0.10876623376623376, 0.10795454545454546, 0.11038961038961038, 0.1112012987012987, 0.11363636363636363, 0.10714285714285714, 0.10795454545454546, 0.10795454545454546, 0.10714285714285714, 0.10633116883116883, 0.10470779220779221, 0.1038961038961039, 0.1038961038961039, 0.10146103896103896, 0.10146103896103896, 0.10227272727272728, 0.10227272727272728, 0.10308441558441558, 0.10308441558441558, 0.6704545454545454, 0.19074675324675325, 0.17857142857142858, 0.11444805194805195, 0.11444805194805195, 0.11525974025974026, 0.1387987012987013, 0.14204545454545456, 0.1452922077922078, 0.9318181818181818, 0.8993506493506493, 0.2840909090909091, 0.25892857142857145, 0.5332792207792207, 0.577922077922078, 0.6939935064935064, 0.7857142857142857, 0.9301948051948052, 0.8563311688311688, 0.7272727272727273, 0.6501623376623377, 0.5665584415584416, 0.49837662337662336, 0.23863636363636365, 0.24025974025974026, 0.14935064935064934, 0.7418831168831169, 0.6436688311688312, 0.11363636363636363, 0.10714285714285714, 0.10308441558441558, 0.10227272727272728, 0.10146103896103896, 0.10064935064935066, 0.09983766233766234, 0.10064935064935066, 0.10470779220779221, 0.10551948051948051, 0.10876623376623376, 0.4797077922077922, 0.46185064935064934, 0.4602272727272727, 0.45535714285714285, 0.09577922077922078, 0.09090909090909091, 0.08928571428571429, 0.08847402597402597, 0.08685064935064934, 0.08603896103896104, 0.08685064935064934, 0.08522727272727272, 0.0836038961038961, 0.08441558441558442, 0.08441558441558442, 0.08116883116883117, 0.07792207792207792, 0.07467532467532467, 0.07305194805194805, 0.07224025974025974, 0.0698051948051948, 0.0698051948051948, 0.0689935064935065, 0.07061688311688312, 0.07142857142857142, 0.0698051948051948, 0.06818181818181818, 0.06818181818181818, 0.06818181818181818, 0.06818181818181818, 0.06818181818181818, 0.06818181818181818, 0.0689935064935065, 0.06818181818181818, 0.07061688311688312, 0.07224025974025974, 0.07305194805194805, 0.07467532467532467, 0.07548701298701299, 0.07467532467532467, 0.07548701298701299, 0.07467532467532467, 0.07142857142857142, 0.07061688311688312, 0.07142857142857142, 0.0698051948051948, 0.06737012987012987, 0.06737012987012987, 0.06655844155844155, 0.06574675324675325, 0.06493506493506493, 0.06574675324675325, 0.06493506493506493, 0.06574675324675325, 0.06412337662337662, 0.06412337662337662, 0.060064935064935064, 0.0625, 0.06818181818181818, 0.0698051948051948, 0.0698051948051948, 0.07061688311688312, 0.07061688311688312, 0.0698051948051948, 0.07142857142857142, 0.07224025974025974, 0.07305194805194805, 0.07548701298701299, 0.07386363636363637, 0.07386363636363637, 0.07224025974025974, 0.07224025974025974, 0.07224025974025974, 0.07224025974025974, 0.07224025974025974, 0.07224025974025974, 0.07305194805194805, 0.07386363636363637, 0.07305194805194805, 0.07224025974025974, 0.07224025974025974, 0.07224025974025974, 0.07061688311688312, 0.0698051948051948, 0.0698051948051948, 0.0698051948051948, 0.0689935064935065, 0.11363636363636363, 0.14123376623376624, 0.12094155844155845, 0.10876623376623376, 0.08198051948051949, 0.08035714285714286, 0.07467532467532467, 0.23214285714285715, 0.08116883116883117, 0.0762987012987013, 0.8482142857142857, 0.0689935064935065, 0.9423701298701299, 0.9448051948051948, 0.9407467532467533, 0.06655844155844155, 0.07061688311688312, 0.0698051948051948, 0.07061688311688312, 0.06655844155844155, 0.06574675324675325, 0.06655844155844155, 0.06737012987012987, 0.06655844155844155, 0.06655844155844155, 0.06655844155844155, 0.06655844155844155, 0.06655844155844155, 0.06655844155844155, 0.39042207792207795, 0.06655844155844155, 0.6623376623376623, 0.0689935064935065, 0.06737012987012987, 0.0689935064935065, 0.0689935064935065, 0.0689935064935065, 0.06655844155844155, 0.06574675324675325, 0.0689935064935065, 0.07061688311688312, 0.0689935064935065, 0.0689935064935065, 0.0689935064935065, 0.0689935064935065, 0.06818181818181818, 0.06818181818181818, 0.0689935064935065, 0.07061688311688312, 0.07061688311688312, 0.07061688311688312, 0.07142857142857142, 0.07142857142857142, 0.07142857142857142, 0.07224025974025974, 0.875, 0.9034090909090909, 0.9163961038961039, 0.9326298701298701, 0.9123376623376623, 0.8839285714285714, 0.7516233766233766, 0.07224025974025974, 0.10633116883116883, 0.14366883116883117, 0.15097402597402598, 0.12175324675324675, 0.10064935064935066, 0.9090909090909091, 0.9488636363636364, 0.36363636363636365, 0.10470779220779221, 0.10551948051948051, 0.10633116883116883, 0.10714285714285714, 0.11363636363636363, 0.11525974025974026, 0.11688311688311688, 0.11688311688311688, 0.1185064935064935, 0.12337662337662338, 0.12824675324675325, 0.13392857142857142, 0.14123376623376624, 0.1599025974025974, 0.174512987012987, 0.288961038961039, 0.7832792207792207], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/NopRA1.gap.json b/pfam_gap_rates/NopRA1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f5b5f7e3b9c6ca22ed082255022f14dca19c60e6
--- /dev/null
+++ b/pfam_gap_rates/NopRA1.gap.json
@@ -0,0 +1 @@
+{"family": "NopRA1", "n_seqs": 301, "length": 241, "gap_rates": [0.48172757475083056, 0.31561461794019935, 0.2558139534883721, 0.12292358803986711, 0.11295681063122924, 0.10963455149501661, 0.10299003322259136, 0.10299003322259136, 0.10631229235880399, 0.11627906976744186, 0.11295681063122924, 0.10299003322259136, 0.09634551495016612, 0.09634551495016612, 0.09634551495016612, 0.08970099667774087, 0.08970099667774087, 0.08305647840531562, 0.07973421926910298, 0.07641196013289037, 0.07641196013289037, 0.07641196013289037, 0.07308970099667775, 0.07308970099667775, 0.07308970099667775, 0.07308970099667775, 0.07308970099667775, 0.07308970099667775, 0.07641196013289037, 0.07308970099667775, 0.07973421926910298, 0.09966777408637874, 0.09966777408637874, 0.09966777408637874, 0.5647840531561462, 0.8205980066445183, 0.8770764119601329, 0.9136212624584718, 0.9169435215946844, 0.9235880398671097, 0.9368770764119602, 0.9435215946843853, 0.9435215946843853, 0.9401993355481728, 0.9269102990033222, 0.9169435215946844, 0.9169435215946844, 0.8970099667774086, 0.867109634551495, 0.8073089700996677, 0.08637873754152824, 0.07641196013289037, 0.0664451827242525, 0.06312292358803986, 0.053156146179401995, 0.053156146179401995, 0.04983388704318937, 0.046511627906976744, 0.046511627906976744, 0.046511627906976744, 0.04318936877076412, 0.04318936877076412, 0.04318936877076412, 0.04318936877076412, 0.04318936877076412, 0.04318936877076412, 0.07973421926910298, 0.04983388704318937, 0.04983388704318937, 0.47840531561461797, 0.4684385382059801, 0.5116279069767442, 0.8538205980066446, 0.8737541528239202, 0.8837209302325582, 0.9069767441860465, 0.920265780730897, 0.9368770764119602, 0.9368770764119602, 0.9269102990033222, 0.920265780730897, 0.9003322259136213, 0.8770764119601329, 0.8637873754152824, 0.8239202657807309, 0.6245847176079734, 0.5647840531561462, 0.5116279069767442, 0.4717607973421927, 0.28903654485049834, 0.26578073089701, 0.24916943521594684, 0.24584717607973422, 0.23920265780730898, 0.04983388704318937, 0.04983388704318937, 0.04983388704318937, 0.046511627906976744, 0.046511627906976744, 0.046511627906976744, 0.046511627906976744, 0.046511627906976744, 0.046511627906976744, 0.046511627906976744, 0.046511627906976744, 0.046511627906976744, 0.046511627906976744, 0.046511627906976744, 0.046511627906976744, 0.046511627906976744, 0.046511627906976744, 0.046511627906976744, 0.04983388704318937, 0.046511627906976744, 0.046511627906976744, 0.046511627906976744, 0.046511627906976744, 0.046511627906976744, 0.046511627906976744, 0.046511627906976744, 0.046511627906976744, 0.04318936877076412, 0.04318936877076412, 0.04318936877076412, 0.04318936877076412, 0.04318936877076412, 0.046511627906976744, 0.046511627906976744, 0.03986710963455149, 0.03986710963455149, 0.03986710963455149, 0.03986710963455149, 0.03322259136212625, 0.03322259136212625, 0.046511627906976744, 0.053156146179401995, 0.053156146179401995, 0.04318936877076412, 0.0664451827242525, 0.9269102990033222, 0.9235880398671097, 0.04983388704318937, 0.04318936877076412, 0.04318936877076412, 0.04318936877076412, 0.04318936877076412, 0.04318936877076412, 0.04318936877076412, 0.04318936877076412, 0.04318936877076412, 0.0664451827242525, 0.6843853820598007, 0.9003322259136213, 0.9269102990033222, 0.9401993355481728, 0.946843853820598, 0.9435215946843853, 0.9335548172757475, 0.920265780730897, 0.8903654485049833, 0.6777408637873754, 0.5548172757475083, 0.06312292358803986, 0.053156146179401995, 0.046511627906976744, 0.036544850498338874, 0.036544850498338874, 0.03322259136212625, 0.03322259136212625, 0.03322259136212625, 0.029900332225913623, 0.029900332225913623, 0.029900332225913623, 0.029900332225913623, 0.03322259136212625, 0.03322259136212625, 0.03322259136212625, 0.029900332225913623, 0.029900332225913623, 0.03322259136212625, 0.029900332225913623, 0.029900332225913623, 0.026578073089700997, 0.026578073089700997, 0.026578073089700997, 0.026578073089700997, 0.026578073089700997, 0.026578073089700997, 0.026578073089700997, 0.026578073089700997, 0.036544850498338874, 0.03322259136212625, 0.036544850498338874, 0.03986710963455149, 0.03986710963455149, 0.03986710963455149, 0.03986710963455149, 0.03986710963455149, 0.03986710963455149, 0.03986710963455149, 0.04318936877076412, 0.04983388704318937, 0.09966777408637874, 0.07973421926910298, 0.0664451827242525, 0.946843853820598, 0.9368770764119602, 0.06312292358803986, 0.059800664451827246, 0.059800664451827246, 0.059800664451827246, 0.06976744186046512, 0.07973421926910298, 0.07973421926910298, 0.07973421926910298, 0.07973421926910298, 0.07973421926910298, 0.08637873754152824, 0.09634551495016612, 0.09966777408637874, 0.10963455149501661, 0.10963455149501661, 0.12292358803986711, 0.12624584717607973, 0.12956810631229235, 0.2026578073089701, 0.1461794019933555, 0.14950166112956811, 0.15946843853820597, 0.15614617940199335, 0.15614617940199335, 0.15614617940199335, 0.16611295681063123, 0.1760797342192691, 0.17275747508305647, 0.17275747508305647, 0.18272425249169436, 0.18604651162790697, 0.2026578073089701, 0.23255813953488372, 0.29900332225913623], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Notch.gap.json b/pfam_gap_rates/Notch.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..3d458857e9cbac95a8b6121e758ec432259ee0a8
--- /dev/null
+++ b/pfam_gap_rates/Notch.gap.json
@@ -0,0 +1 @@
+{"family": "Notch", "n_seqs": 821, "length": 39, "gap_rates": [0.8733252131546894, 0.5310596833130329, 0.27527405602923266, 0.14129110840438489, 0.13763702801461633, 0.9001218026796589, 0.8867235079171741, 0.48112058465286234, 0.4835566382460414, 0.28258221680876977, 0.058465286236297195, 0.0438489646772229, 0.0389768574908648, 0.012180267965895249, 0.0048721071863581, 0.0036540803897685747, 0.5980511571254568, 0.018270401948842874, 0.001218026796589525, 0.001218026796589525, 0.001218026796589525, 0.001218026796589525, 0.001218026796589525, 0.001218026796589525, 0.0, 0.0, 0.0, 0.0, 0.001218026796589525, 0.001218026796589525, 0.001218026796589525, 0.001218026796589525, 0.001218026796589525, 0.001218026796589525, 0.001218026796589525, 0.00243605359317905, 0.00243605359317905, 0.00243605359317905, 0.5408038976857491], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Nt_Gln_amidase.gap.json b/pfam_gap_rates/Nt_Gln_amidase.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..7f3bc404700a35dc88c5c10ed4783a8ea07306ae
--- /dev/null
+++ b/pfam_gap_rates/Nt_Gln_amidase.gap.json
@@ -0,0 +1 @@
+{"family": "Nt_Gln_amidase", "n_seqs": 191, "length": 232, "gap_rates": [0.387434554973822, 0.3769633507853403, 0.34554973821989526, 0.3298429319371728, 0.3193717277486911, 0.3036649214659686, 0.2670157068062827, 0.2670157068062827, 0.2670157068062827, 0.2670157068062827, 0.2670157068062827, 0.2670157068062827, 0.25654450261780104, 0.25654450261780104, 0.25654450261780104, 0.25654450261780104, 0.25654450261780104, 0.25654450261780104, 0.25654450261780104, 0.25654450261780104, 0.25654450261780104, 0.2670157068062827, 0.3089005235602094, 0.32460732984293195, 0.3717277486910995, 0.38219895287958117, 0.6544502617801047, 0.93717277486911, 0.9424083769633508, 0.7853403141361257, 0.24083769633507854, 0.23036649214659685, 0.23036649214659685, 0.23036649214659685, 0.2198952879581152, 0.2198952879581152, 0.2198952879581152, 0.2094240837696335, 0.2094240837696335, 0.20418848167539266, 0.20418848167539266, 0.20418848167539266, 0.18848167539267016, 0.18324607329842932, 0.18324607329842932, 0.18848167539267016, 0.18848167539267016, 0.18324607329842932, 0.17801047120418848, 0.17277486910994763, 0.17277486910994763, 0.17801047120418848, 0.3717277486910995, 0.9476439790575916, 0.8848167539267016, 0.24083769633507854, 0.20418848167539266, 0.17801047120418848, 0.16230366492146597, 0.16230366492146597, 0.16230366492146597, 0.1518324607329843, 0.1518324607329843, 0.1256544502617801, 0.13089005235602094, 0.1256544502617801, 0.13089005235602094, 0.13089005235602094, 0.13089005235602094, 0.13089005235602094, 0.1518324607329843, 0.34554973821989526, 0.6282722513089005, 0.6492146596858639, 0.8586387434554974, 0.8743455497382199, 0.8848167539267016, 0.9162303664921466, 0.9267015706806283, 0.93717277486911, 0.9476439790575916, 0.9267015706806283, 0.9162303664921466, 0.8952879581151832, 0.8848167539267016, 0.8638743455497382, 0.8481675392670157, 0.612565445026178, 0.31413612565445026, 0.19895287958115182, 0.16230366492146597, 0.1518324607329843, 0.14659685863874344, 0.14136125654450263, 0.13612565445026178, 0.13612565445026178, 0.13612565445026178, 0.13612565445026178, 0.13612565445026178, 0.14136125654450263, 0.14136125654450263, 0.13612565445026178, 0.13612565445026178, 0.13612565445026178, 0.9424083769633508, 0.13612565445026178, 0.13612565445026178, 0.13612565445026178, 0.13612565445026178, 0.14136125654450263, 0.14136125654450263, 0.1518324607329843, 0.1518324607329843, 0.1518324607329843, 0.1518324607329843, 0.15706806282722513, 0.15706806282722513, 0.15706806282722513, 0.1518324607329843, 0.9476439790575916, 0.8900523560209425, 0.16230366492146597, 0.17801047120418848, 0.17801047120418848, 0.23036649214659685, 0.19895287958115182, 0.17277486910994763, 0.17277486910994763, 0.16753926701570682, 0.15706806282722513, 0.16230366492146597, 0.16230366492146597, 0.17277486910994763, 0.18324607329842932, 0.18848167539267016, 0.193717277486911, 0.193717277486911, 0.193717277486911, 0.18848167539267016, 0.18848167539267016, 0.18848167539267016, 0.18848167539267016, 0.193717277486911, 0.193717277486911, 0.193717277486911, 0.193717277486911, 0.193717277486911, 0.193717277486911, 0.193717277486911, 0.193717277486911, 0.193717277486911, 0.193717277486911, 0.18324607329842932, 0.18324607329842932, 0.8638743455497382, 0.900523560209424, 0.9476439790575916, 0.93717277486911, 0.8900523560209425, 0.8534031413612565, 0.28272251308900526, 0.193717277486911, 0.193717277486911, 0.2094240837696335, 0.20418848167539266, 0.20418848167539266, 0.20418848167539266, 0.193717277486911, 0.193717277486911, 0.193717277486911, 0.193717277486911, 0.193717277486911, 0.193717277486911, 0.20418848167539266, 0.20418848167539266, 0.2094240837696335, 0.8848167539267016, 0.8952879581151832, 0.8900523560209425, 0.8167539267015707, 0.6178010471204188, 0.3089005235602094, 0.25654450261780104, 0.2617801047120419, 0.2513089005235602, 0.24083769633507854, 0.24607329842931938, 0.24607329842931938, 0.24607329842931938, 0.24607329842931938, 0.9057591623036649, 0.2513089005235602, 0.2513089005235602, 0.2513089005235602, 0.2513089005235602, 0.2513089005235602, 0.25654450261780104, 0.25654450261780104, 0.25654450261780104, 0.2617801047120419, 0.6230366492146597, 0.7486910994764397, 0.7958115183246073, 0.7958115183246073, 0.806282722513089, 0.8167539267015707, 0.8272251308900523, 0.9267015706806283, 0.900523560209424, 0.8272251308900523, 0.8115183246073299, 0.8010471204188482, 0.7958115183246073, 0.7696335078534031, 0.7225130890052356, 0.5863874345549738, 0.3036649214659686, 0.35602094240837695, 0.3298429319371728, 0.3298429319371728, 0.3298429319371728, 0.3298429319371728, 0.33507853403141363, 0.3403141361256545, 0.3612565445026178, 0.3769633507853403, 0.387434554973822, 0.39267015706806285, 0.418848167539267, 0.49214659685863876, 0.5602094240837696, 0.5863874345549738], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Nucleoside_tran.gap.json b/pfam_gap_rates/Nucleoside_tran.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..844adf3ef4a3b682aee97164a2cc9615af026efa
--- /dev/null
+++ b/pfam_gap_rates/Nucleoside_tran.gap.json
@@ -0,0 +1 @@
+{"family": "Nucleoside_tran", "n_seqs": 965, "length": 384, "gap_rates": [0.8787564766839379, 0.6963730569948187, 0.5782383419689119, 0.5036269430051813, 0.46735751295336786, 0.40207253886010363, 0.36787564766839376, 0.3139896373056995, 0.29430051813471503, 0.27461139896373055, 0.27150259067357513, 0.27150259067357513, 0.26735751295336785, 0.26424870466321243, 0.261139896373057, 0.2601036269430052, 0.25906735751295334, 0.25906735751295334, 0.25906735751295334, 0.25906735751295334, 0.25906735751295334, 0.25906735751295334, 0.25906735751295334, 0.261139896373057, 0.2601036269430052, 0.25803108808290154, 0.25906735751295334, 0.25803108808290154, 0.25803108808290154, 0.2528497409326425, 0.25181347150259065, 0.25077720207253884, 0.25077720207253884, 0.24455958549222798, 0.24352331606217617, 0.24352331606217617, 0.24145077720207253, 0.24041450777202072, 0.24041450777202072, 0.23937823834196892, 0.23937823834196892, 0.24041450777202072, 0.23730569948186528, 0.23937823834196892, 0.23937823834196892, 0.23937823834196892, 0.23937823834196892, 0.24041450777202072, 0.24041450777202072, 0.9202072538860103, 0.24041450777202072, 0.24145077720207253, 0.24145077720207253, 0.24041450777202072, 0.24455958549222798, 0.24663212435233162, 0.24766839378238342, 0.24663212435233162, 0.555440414507772, 0.6082901554404145, 0.8393782383419689, 0.8652849740932642, 0.8880829015544042, 0.910880829015544, 0.9430051813471503, 0.927461139896373, 0.8984455958549222, 0.8756476683937824, 0.8559585492227979, 0.8196891191709844, 0.5865284974093264, 0.5398963730569948, 0.24663212435233162, 0.24663212435233162, 0.24663212435233162, 0.24559585492227978, 0.24352331606217617, 0.24248704663212436, 0.24248704663212436, 0.24352331606217617, 0.24352331606217617, 0.24352331606217617, 0.24455958549222798, 0.24352331606217617, 0.24559585492227978, 0.24455958549222798, 0.24766839378238342, 0.24663212435233162, 0.24870466321243523, 0.24870466321243523, 0.24766839378238342, 0.24870466321243523, 0.25077720207253884, 0.25077720207253884, 0.24663212435233162, 0.24870466321243523, 0.2549222797927461, 0.25699481865284973, 0.2704663212435233, 0.27461139896373055, 0.28186528497409324, 0.28290155440414505, 0.28186528497409324, 0.2860103626943005, 0.2849740932642487, 0.28808290155440414, 0.2932642487046632, 0.29430051813471503, 0.2994818652849741, 0.30466321243523314, 0.31813471502590673, 0.9067357512953368, 0.9253886010362694, 0.9305699481865285, 0.9347150259067357, 0.9378238341968912, 0.944041450777202, 0.9481865284974094, 0.9492227979274611, 0.9450777202072539, 0.944041450777202, 0.9367875647668393, 0.933678756476684, 0.9264248704663213, 0.9150259067357513, 0.8891191709844559, 0.6880829015544041, 0.6870466321243524, 0.6528497409326425, 0.9378238341968912, 0.9481865284974094, 0.9129533678756476, 0.6383419689119171, 0.6082901554404145, 0.5761658031088083, 0.5481865284974093, 0.5202072538860104, 0.49015544041450776, 0.44974093264248705, 0.40207253886010363, 0.38341968911917096, 0.38341968911917096, 0.37409326424870465, 0.37409326424870465, 0.37927461139896373, 0.3927461139896373, 0.39378238341968913, 0.9088082901554404, 0.9316062176165804, 0.8756476683937824, 0.4, 0.42901554404145076, 0.5181347150259067, 0.5015544041450777, 0.9129533678756476, 0.6704663212435233, 0.5295336787564767, 0.49222797927461137, 0.4538860103626943, 0.4466321243523316, 0.44352331606217615, 0.43419689119170984, 0.4, 0.8829015544041451, 0.8901554404145078, 0.8932642487046633, 0.9025906735751296, 0.9046632124352332, 0.9119170984455959, 0.9191709844559586, 0.927461139896373, 0.9347150259067357, 0.9419689119170984, 0.944041450777202, 0.9461139896373058, 0.9430051813471503, 0.9398963730569948, 0.9326424870466321, 0.9222797927461139, 0.9129533678756476, 0.9077720207253887, 0.9046632124352332, 0.8974093264248705, 0.8911917098445595, 0.8860103626943006, 0.8797927461139896, 0.41139896373056994, 0.6362694300518135, 0.5937823834196891, 0.5564766839378238, 0.5274611398963731, 0.49948186528497407, 0.48911917098445595, 0.46839378238341967, 0.4466321243523316, 0.44145077720207254, 0.9398963730569948, 0.44870466321243524, 0.39896373056994816, 0.3233160621761658, 0.2994818652849741, 0.25181347150259065, 0.24041450777202072, 0.23523316062176167, 0.23212435233160622, 0.22797927461139897, 0.22590673575129533, 0.22694300518134716, 0.2559585492227979, 0.21968911917098446, 0.21658031088082902, 0.21347150259067357, 0.21243523316062177, 0.21243523316062177, 0.21450777202072538, 0.2155440414507772, 0.2155440414507772, 0.2704663212435233, 0.23005181347150258, 0.22072538860103627, 0.22590673575129533, 0.22487046632124352, 0.21658031088082902, 0.21658031088082902, 0.2155440414507772, 0.21450777202072538, 0.2155440414507772, 0.7989637305699482, 0.2922279792746114, 0.27979274611398963, 0.261139896373057, 0.2538860103626943, 0.23523316062176167, 0.23834196891191708, 0.24559585492227978, 0.4, 0.3150259067357513, 0.9233160621761658, 0.8870466321243523, 0.2683937823834197, 0.2549222797927461, 0.8642487046632125, 0.9316062176165804, 0.9461139896373058, 0.8953367875647669, 0.8331606217616581, 0.2528497409326425, 0.22590673575129533, 0.23730569948186528, 0.7544041450777202, 0.38963730569948185, 0.37305699481865284, 0.36683937823834195, 0.47875647668393784, 0.30466321243523314, 0.20932642487046632, 0.20103626943005182, 0.19481865284974093, 0.20518134715025907, 0.18549222797927462, 0.18341968911917098, 0.18341968911917098, 0.18341968911917098, 0.18341968911917098, 0.1844559585492228, 0.18341968911917098, 0.18341968911917098, 0.18341968911917098, 0.18341968911917098, 0.1844559585492228, 0.18963730569948187, 0.19481865284974093, 0.2, 0.19792746113989637, 0.19792746113989637, 0.20310880829015543, 0.19689119170984457, 0.19896373056994818, 0.550259067357513, 0.48082901554404145, 0.9492227979274611, 0.894300518134715, 0.24974093264248703, 0.19585492227979276, 0.19067357512953367, 0.18963730569948187, 0.18963730569948187, 0.19067357512953367, 0.18756476683937823, 0.1927461139896373, 0.22590673575129533, 0.2155440414507772, 0.18756476683937823, 0.18652849740932642, 0.18652849740932642, 0.18652849740932642, 0.18756476683937823, 0.18963730569948187, 0.18963730569948187, 0.18963730569948187, 0.18963730569948187, 0.18341968911917098, 0.1844559585492228, 0.18341968911917098, 0.32746113989637304, 0.20518134715025907, 0.21658031088082902, 0.5170984455958549, 0.5025906735751295, 0.9481865284974094, 0.9077720207253887, 0.6435233160621762, 0.6134715025906736, 0.6373056994818653, 0.5533678756476684, 0.3689119170984456, 0.33678756476683935, 0.30466321243523314, 0.20725388601036268, 0.20414507772020726, 0.19481865284974093, 0.19170984455958548, 0.19067357512953367, 0.18860103626943006, 0.1844559585492228, 0.19067357512953367, 0.19896373056994818, 0.18756476683937823, 0.18134715025906736, 0.18238341968911917, 0.18238341968911917, 0.18031088082901556, 0.18031088082901556, 0.18031088082901556, 0.18031088082901556, 0.18031088082901556, 0.19170984455958548, 0.18549222797927462, 0.18341968911917098, 0.18341968911917098, 0.18549222797927462, 0.18652849740932642, 0.18652849740932642, 0.18756476683937823, 0.18860103626943006, 0.19067357512953367, 0.19067357512953367, 0.19378238341968912, 0.19585492227979276, 0.20414507772020726, 0.21036269430051813, 0.21139896373056996, 0.9347150259067357, 0.8176165803108808, 0.21243523316062177, 0.21347150259067357, 0.21347150259067357, 0.21243523316062177, 0.21243523316062177, 0.21243523316062177, 0.2155440414507772, 0.21761658031088082, 0.21865284974093263, 0.22072538860103627, 0.22176165803108808, 0.22279792746113988, 0.22176165803108808, 0.22279792746113988, 0.22383419689119172, 0.22487046632124352, 0.22487046632124352, 0.22694300518134716, 0.23316062176165803, 0.23834196891191708, 0.24041450777202072, 0.24248704663212436, 0.24248704663212436, 0.2528497409326425, 0.2632124352331606, 0.28290155440414505, 0.33575129533678755, 0.3761658031088083, 0.49844559585492226, 0.7803108808290156], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Nudc_N.gap.json b/pfam_gap_rates/Nudc_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f1f60c23ab86a6d994cffa7a85c2c77a645a2d4d
--- /dev/null
+++ b/pfam_gap_rates/Nudc_N.gap.json
@@ -0,0 +1 @@
+{"family": "Nudc_N", "n_seqs": 204, "length": 70, "gap_rates": [0.25980392156862747, 0.0784313725490196, 0.029411764705882353, 0.029411764705882353, 0.024509803921568627, 0.024509803921568627, 0.024509803921568627, 0.024509803921568627, 0.0196078431372549, 0.014705882352941176, 0.014705882352941176, 0.6470588235294118, 0.014705882352941176, 0.00980392156862745, 0.00980392156862745, 0.00980392156862745, 0.00980392156862745, 0.004901960784313725, 0.004901960784313725, 0.004901960784313725, 0.004901960784313725, 0.004901960784313725, 0.004901960784313725, 0.004901960784313725, 0.004901960784313725, 0.004901960784313725, 0.004901960784313725, 0.004901960784313725, 0.004901960784313725, 0.0, 0.0, 0.0, 0.0, 0.0, 0.004901960784313725, 0.06372549019607843, 0.18137254901960784, 0.24019607843137256, 0.2696078431372549, 0.3235294117647059, 0.3872549019607843, 0.46568627450980393, 0.6862745098039216, 0.9215686274509803, 0.9313725490196079, 0.9411764705882353, 0.946078431372549, 0.946078431372549, 0.9411764705882353, 0.9313725490196079, 0.9264705882352942, 0.9215686274509803, 0.6127450980392157, 0.5735294117647058, 0.5147058823529411, 0.5196078431372549, 0.5098039215686274, 0.5098039215686274, 0.5049019607843137, 0.49019607843137253, 0.4803921568627451, 0.4852941176470588, 0.4852941176470588, 0.4950980392156863, 0.5147058823529411, 0.5196078431372549, 0.5245098039215687, 0.5343137254901961, 0.5588235294117647, 0.7598039215686274], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/NusA_N.gap.json b/pfam_gap_rates/NusA_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..9f2f2bd003994edbbcee6d8e949fd918432856db
--- /dev/null
+++ b/pfam_gap_rates/NusA_N.gap.json
@@ -0,0 +1 @@
+{"family": "NusA_N", "n_seqs": 2326, "length": 160, "gap_rates": [0.4591573516766982, 0.264402407566638, 0.23344797936371453, 0.1294067067927773, 0.11435941530524506, 0.1061908856405847, 0.10490111779879621, 0.10404127257093723, 0.10275150472914875, 0.10232158211521926, 0.09888220120378331, 0.09888220120378331, 0.09845227858985382, 0.09845227858985382, 0.09845227858985382, 0.09845227858985382, 0.09759243336199484, 0.09716251074806535, 0.09630266552020636, 0.09544282029234738, 0.09458297506448839, 0.09458297506448839, 0.09458297506448839, 0.09458297506448839, 0.09458297506448839, 0.09458297506448839, 0.09458297506448839, 0.09501289767841789, 0.09501289767841789, 0.09501289767841789, 0.09501289767841789, 0.09544282029234738, 0.09501289767841789, 0.09501289767841789, 0.09501289767841789, 0.09673258813413585, 0.11349957007738606, 0.9393809114359415, 0.9466895958727429, 0.9277730008598453, 0.10490111779879621, 0.11049011177987962, 0.8430782459157352, 0.10060189165950129, 0.09587274290627687, 0.945829750644884, 0.09587274290627687, 0.09544282029234738, 0.09501289767841789, 0.09501289767841789, 0.09501289767841789, 0.09544282029234738, 0.09544282029234738, 0.09888220120378331, 0.09716251074806535, 0.09888220120378331, 0.09845227858985382, 0.09587274290627687, 0.09673258813413585, 0.09802235597592433, 0.10189165950128977, 0.12295786758383491, 0.1534823731728289, 0.18142734307824593, 0.1934651762682717, 0.1999140154772141, 0.20077386070507308, 0.8404987102321582, 0.7764402407566638, 0.205932932072227, 0.23172828890799657, 0.8886500429922614, 0.8796216680997421, 0.23344797936371453, 0.23301805674978504, 0.9264832330180568, 0.9273430782459158, 0.9277730008598453, 0.9290627687016337, 0.9299226139294927, 0.9299226139294927, 0.9299226139294927, 0.9307824591573517, 0.9320722269991402, 0.9368013757523646, 0.9385210662080825, 0.9393809114359415, 0.944969905417025, 0.9488392089423904, 0.9475494411006019, 0.943250214961307, 0.938950988822012, 0.938091143594153, 0.9333619948409286, 0.9316423043852107, 0.9299226139294927, 0.9299226139294927, 0.9299226139294927, 0.9299226139294927, 0.9286328460877042, 0.9273430782459158, 0.9273430782459158, 0.9260533104041273, 0.22871883061049011, 0.2235597592433362, 0.22141014617368873, 0.21969045571797077, 0.2175408426483233, 0.21539122957867585, 0.21109200343938092, 0.2063628546861565, 0.205932932072227, 0.20851246775580395, 0.20722269991401548, 0.21496130696474636, 0.2235597592433362, 0.2239896818572657, 0.2123817712811694, 0.2055030094582975, 0.2003439380911436, 0.21969045571797077, 0.21410146173688735, 0.20249355116079107, 0.16938950988822013, 0.16294067067927773, 0.1590713671539123, 0.15735167669819433, 0.1461736887360275, 0.13112639724849526, 0.9264832330180568, 0.11607910576096303, 0.1182287188306105, 0.8907996560619088, 0.14058469475494412, 0.13112639724849526, 0.1113499570077386, 0.11006018916595013, 0.10963026655202064, 0.11006018916595013, 0.11006018916595013, 0.11006018916595013, 0.11006018916595013, 0.11006018916595013, 0.11049011177987962, 0.11092003439380911, 0.11306964746345657, 0.11521926053310404, 0.11521926053310404, 0.11521926053310404, 0.11564918314703354, 0.11607910576096303, 0.1173688736027515, 0.1173688736027515, 0.11908856405846947, 0.12080825451418745, 0.12596732588134135, 0.1294067067927773, 0.15563198624247634, 0.17325881341358557, 0.5283748925193466], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/NusB.gap.json b/pfam_gap_rates/NusB.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..de706c39d42c0cd0ab4dc1d0adf93a6a80e5b30b
--- /dev/null
+++ b/pfam_gap_rates/NusB.gap.json
@@ -0,0 +1 @@
+{"family": "NusB", "n_seqs": 3670, "length": 141, "gap_rates": [0.8542234332425068, 0.420708446866485, 0.22942779291553134, 0.19645776566757492, 0.19346049046321526, 0.1885558583106267, 0.18446866485013624, 0.17547683923705723, 0.17411444141689372, 0.17275204359673024, 0.17166212534059946, 0.17111716621253406, 0.17111716621253406, 0.17029972752043596, 0.6196185286103543, 0.6114441416893733, 0.6054495912806539, 0.6016348773841962, 0.6051771117166213, 0.6054495912806539, 0.9147138964577657, 0.7863760217983651, 0.6686648501362398, 0.28038147138964575, 0.21171662125340598, 0.1885558583106267, 0.1790190735694823, 0.17275204359673024, 0.1667574931880109, 0.15013623978201635, 0.15204359673024523, 0.15776566757493188, 0.1667574931880109, 0.17411444141689372, 0.17983651226158037, 0.9348773841961853, 0.9463215258855586, 0.8923705722070845, 0.5425068119891008, 0.47220708446866483, 0.3686648501362398, 0.3188010899182561, 0.24904632152588557, 0.20681198910081744, 0.1656675749318801, 0.10953678474114441, 0.06594005449591281, 0.05395095367847411, 0.04741144414168937, 0.043596730245231606, 0.03814713896457766, 0.0340599455040872, 0.03188010899182561, 0.029155313351498638, 0.026975476839237057, 0.02316076294277929, 0.0220708446866485, 0.01553133514986376, 0.014168937329700272, 0.012534059945504087, 0.009536784741144414, 0.009536784741144414, 0.009264305177111716, 0.008991825613079018, 0.008446866485013624, 0.008174386920980926, 0.007629427792915531, 0.007356948228882834, 0.007356948228882834, 0.007356948228882834, 0.007356948228882834, 0.007084468664850136, 0.007084468664850136, 0.006811989100817439, 0.8863760217983652, 0.010626702997275205, 0.00790190735694823, 0.45286103542234335, 0.1005449591280654, 0.05231607629427793, 0.04577656675749319, 0.01444141689373297, 0.01226158038147139, 0.04904632152588556, 0.05013623978201635, 0.022888283378746595, 0.009536784741144414, 0.005722070844686649, 0.005994550408719346, 0.005449591280653951, 0.0051771117166212535, 0.004904632152588556, 0.004359673024523161, 0.004087193460490463, 0.0038147138964577656, 0.0038147138964577656, 0.004359673024523161, 0.0038147138964577656, 0.004087193460490463, 0.004359673024523161, 0.004632152588555858, 0.004359673024523161, 0.004632152588555858, 0.3217983651226158, 0.017166212534059946, 0.007084468664850136, 0.0032697547683923707, 0.004087193460490463, 0.003542234332425068, 0.0038147138964577656, 0.0038147138964577656, 0.0038147138964577656, 0.004359673024523161, 0.006267029972752043, 0.006539509536784741, 0.007084468664850136, 0.00790190735694823, 0.008446866485013624, 0.009809264305177113, 0.010899182561307902, 0.01335149863760218, 0.012806539509536785, 0.9267029972752043, 0.06730245231607629, 0.026430517711171664, 0.02125340599455041, 0.018528610354223433, 0.013079019073569483, 0.01335149863760218, 0.01335149863760218, 0.01335149863760218, 0.013623978201634877, 0.014168937329700272, 0.014168937329700272, 0.014986376021798364, 0.01662125340599455, 0.016893732970027248, 0.01880108991825613, 0.027247956403269755, 0.16076294277929154, 0.5174386920980927], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/OAM_dimer.gap.json b/pfam_gap_rates/OAM_dimer.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c9814c7b827101b6851560cb574f169f29f77ca8
--- /dev/null
+++ b/pfam_gap_rates/OAM_dimer.gap.json
@@ -0,0 +1 @@
+{"family": "OAM_dimer", "n_seqs": 158, "length": 79, "gap_rates": [0.6772151898734177, 0.02531645569620253, 0.0189873417721519, 0.0189873417721519, 0.0189873417721519, 0.0189873417721519, 0.0189873417721519, 0.0189873417721519, 0.0189873417721519, 0.0189873417721519, 0.0189873417721519, 0.0189873417721519, 0.0189873417721519, 0.0189873417721519, 0.0189873417721519, 0.0189873417721519, 0.0189873417721519, 0.0189873417721519, 0.0189873417721519, 0.0189873417721519, 0.0189873417721519, 0.0189873417721519, 0.0189873417721519, 0.34810126582278483, 0.0189873417721519, 0.0189873417721519, 0.0189873417721519, 0.0189873417721519, 0.0189873417721519, 0.0189873417721519, 0.0189873417721519, 0.0189873417721519, 0.0189873417721519, 0.0189873417721519, 0.006329113924050633, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.012658227848101266, 0.6708860759493671, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.012658227848101266, 0.012658227848101266, 0.34810126582278483], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/OKR_DC_1_N.gap.json b/pfam_gap_rates/OKR_DC_1_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..2051bbef3da4ca90df88e4525328458fed07f596
--- /dev/null
+++ b/pfam_gap_rates/OKR_DC_1_N.gap.json
@@ -0,0 +1 @@
+{"family": "OKR_DC_1_N", "n_seqs": 233, "length": 129, "gap_rates": [0.8154506437768241, 0.22746781115879827, 0.13304721030042918, 0.08583690987124463, 0.06437768240343347, 0.060085836909871244, 0.055793991416309016, 0.05150214592274678, 0.05150214592274678, 0.05150214592274678, 0.05150214592274678, 0.04291845493562232, 0.04291845493562232, 0.03862660944206009, 0.16738197424892703, 0.02575107296137339, 0.017167381974248927, 0.017167381974248927, 0.012875536480686695, 0.012875536480686695, 0.012875536480686695, 0.012875536480686695, 0.012875536480686695, 0.012875536480686695, 0.012875536480686695, 0.008583690987124463, 0.008583690987124463, 0.1888412017167382, 0.1888412017167382, 0.1888412017167382, 0.18454935622317598, 0.18454935622317598, 0.18454935622317598, 0.18454935622317598, 0.17167381974248927, 0.008583690987124463, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.055793991416309016, 0.055793991416309016, 0.30042918454935624, 0.30042918454935624, 0.3776824034334764, 0.4334763948497854, 0.5107296137339056, 0.5150214592274678, 0.5579399141630901, 0.7682403433476395, 0.944206008583691, 0.7467811158798283, 0.5364806866952789, 0.5150214592274678, 0.43776824034334766, 0.38626609442060084, 0.3133047210300429, 0.30042918454935624, 0.30042918454935624, 0.008583690987124463, 0.0, 0.0, 0.017167381974248927, 0.008583690987124463, 0.004291845493562232, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.004291845493562232, 0.008583690987124463, 0.1888412017167382, 0.18025751072961374, 0.9484978540772532, 0.034334763948497854, 0.02145922746781116, 0.017167381974248927, 0.012875536480686695, 0.012875536480686695, 0.012875536480686695, 0.02145922746781116, 0.02575107296137339, 0.02575107296137339, 0.02145922746781116, 0.017167381974248927, 0.017167381974248927, 0.017167381974248927, 0.017167381974248927, 0.02575107296137339, 0.02575107296137339, 0.030042918454935622, 0.034334763948497854, 0.034334763948497854, 0.030042918454935622, 0.030042918454935622, 0.030042918454935622, 0.02575107296137339, 0.02575107296137339, 0.02575107296137339, 0.02575107296137339, 0.02575107296137339, 0.02575107296137339, 0.02575107296137339, 0.02575107296137339, 0.02575107296137339, 0.02575107296137339, 0.030042918454935622, 0.030042918454935622, 0.030042918454935622, 0.030042918454935622, 0.034334763948497854, 0.04291845493562232], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Oleosin.gap.json b/pfam_gap_rates/Oleosin.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..8f31095301582b6b1a3cd6a9af1f5998dfd5aaee
--- /dev/null
+++ b/pfam_gap_rates/Oleosin.gap.json
@@ -0,0 +1 @@
+{"family": "Oleosin", "n_seqs": 171, "length": 114, "gap_rates": [0.5087719298245614, 0.25146198830409355, 0.13450292397660818, 0.10526315789473684, 0.09941520467836257, 0.0935672514619883, 0.07602339181286549, 0.07017543859649122, 0.07017543859649122, 0.05847953216374269, 0.05263157894736842, 0.05263157894736842, 0.05263157894736842, 0.04678362573099415, 0.04678362573099415, 0.04093567251461988, 0.04093567251461988, 0.04093567251461988, 0.04093567251461988, 0.03508771929824561, 0.03508771929824561, 0.029239766081871343, 0.023391812865497075, 0.023391812865497075, 0.023391812865497075, 0.023391812865497075, 0.029239766081871343, 0.029239766081871343, 0.029239766081871343, 0.023391812865497075, 0.017543859649122806, 0.017543859649122806, 0.017543859649122806, 0.023391812865497075, 0.017543859649122806, 0.017543859649122806, 0.011695906432748537, 0.011695906432748537, 0.011695906432748537, 0.011695906432748537, 0.011695906432748537, 0.005847953216374269, 0.005847953216374269, 0.005847953216374269, 0.005847953216374269, 0.005847953216374269, 0.005847953216374269, 0.005847953216374269, 0.023391812865497075, 0.023391812865497075, 0.023391812865497075, 0.029239766081871343, 0.011695906432748537, 0.005847953216374269, 0.005847953216374269, 0.005847953216374269, 0.005847953216374269, 0.005847953216374269, 0.0, 0.011695906432748537, 0.011695906432748537, 0.017543859649122806, 0.017543859649122806, 0.011695906432748537, 0.011695906432748537, 0.005847953216374269, 0.023391812865497075, 0.029239766081871343, 0.029239766081871343, 0.029239766081871343, 0.005847953216374269, 0.005847953216374269, 0.005847953216374269, 0.023391812865497075, 0.023391812865497075, 0.023391812865497075, 0.023391812865497075, 0.023391812865497075, 0.023391812865497075, 0.029239766081871343, 0.04093567251461988, 0.04678362573099415, 0.05847953216374269, 0.9298245614035088, 0.11695906432748537, 0.15204678362573099, 0.11695906432748537, 0.11695906432748537, 0.14035087719298245, 0.14619883040935672, 0.14619883040935672, 0.14619883040935672, 0.15789473684210525, 0.16374269005847952, 0.1695906432748538, 0.16374269005847952, 0.1695906432748538, 0.17543859649122806, 0.19883040935672514, 0.2046783625730994, 0.21052631578947367, 0.21637426900584794, 0.21637426900584794, 0.2222222222222222, 0.2222222222222222, 0.2222222222222222, 0.2222222222222222, 0.22807017543859648, 0.24561403508771928, 0.2631578947368421, 0.29239766081871343, 0.34502923976608185, 0.4619883040935672, 0.5497076023391813], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/OmdA.gap.json b/pfam_gap_rates/OmdA.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a82b549f33cdc2c3d852e7d6e842710730f4b801
--- /dev/null
+++ b/pfam_gap_rates/OmdA.gap.json
@@ -0,0 +1 @@
+{"family": "OmdA", "n_seqs": 841, "length": 60, "gap_rates": [0.7942925089179548, 0.3816884661117717, 0.23543400713436385, 0.1581450653983353, 0.1367419738406659, 0.09988109393579073, 0.07015457788347206, 0.03210463733650416, 0.023781212841854936, 0.020214030915576695, 0.019024970273483946, 0.016646848989298454, 0.015457788347205707, 0.015457788347205707, 0.06658739595719382, 0.026159334126040427, 0.020214030915576695, 0.01070154577883472, 0.005945303210463734, 0.005945303210463734, 0.005945303210463734, 0.0047562425683709865, 0.0047562425683709865, 0.0035671819262782403, 0.0023781212841854932, 0.0011890606420927466, 0.0023781212841854932, 0.0023781212841854932, 0.0023781212841854932, 0.0023781212841854932, 0.0011890606420927466, 0.0011890606420927466, 0.0011890606420927466, 0.0011890606420927466, 0.0011890606420927466, 0.0011890606420927466, 0.0011890606420927466, 0.0023781212841854932, 0.0023781212841854932, 0.0047562425683709865, 0.009512485136741973, 0.0047562425683709865, 0.0047562425683709865, 0.005945303210463734, 0.005945303210463734, 0.005945303210463734, 0.007134363852556481, 0.009512485136741973, 0.009512485136741973, 0.011890606420927468, 0.013079667063020214, 0.014268727705112961, 0.015457788347205707, 0.0356718192627824, 0.04399524375743163, 0.06420927467300833, 0.07847800237812129, 0.16527942925089179, 0.2699167657550535, 0.4102259215219976], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/OmpA.gap.json b/pfam_gap_rates/OmpA.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..0b1a24587f0518753570f0a38912ea7ea6982a12
--- /dev/null
+++ b/pfam_gap_rates/OmpA.gap.json
@@ -0,0 +1 @@
+{"family": "OmpA", "n_seqs": 5000, "length": 112, "gap_rates": [0.3328, 0.0714, 0.0692, 0.0652, 0.0618, 0.0578, 0.0542, 0.0498, 0.0486, 0.0498, 0.041, 0.0384, 0.0344, 0.0302, 0.0254, 0.0214, 0.0172, 0.0152, 0.0152, 0.0138, 0.013, 0.0112, 0.0106, 0.0104, 0.0102, 0.8798, 0.9362, 0.3342, 0.0508, 0.0766, 0.0576, 0.0656, 0.0072, 0.8622, 0.9416, 0.8962, 0.7538, 0.0054, 0.0042, 0.004, 0.0036, 0.0032, 0.003, 0.0038, 0.0042, 0.005, 0.9454, 0.9486, 0.9366, 0.0164, 0.0212, 0.0172, 0.017, 0.0124, 0.0038, 0.758, 0.794, 0.9272, 0.7708, 0.7344, 0.0028, 0.0026, 0.002, 0.0018, 0.0012, 0.001, 0.0012, 0.0012, 0.0012, 0.0012, 0.0016, 0.002, 0.002, 0.0024, 0.0024, 0.004, 0.0044, 0.0054, 0.7596, 0.0156, 0.0118, 0.0122, 0.0174, 0.0166, 0.0162, 0.0286, 0.0206, 0.924, 0.0386, 0.0366, 0.0296, 0.0326, 0.0364, 0.0402, 0.0448, 0.0568, 0.067, 0.0748, 0.0836, 0.0954, 0.1068, 0.1212, 0.1348, 0.1566, 0.1808, 0.2036, 0.244, 0.2696, 0.3046, 0.3218, 0.3412, 0.371], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/OmpA_membrane.gap.json b/pfam_gap_rates/OmpA_membrane.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..6d99502d0eb9373925d7c700309b2b7e975d6617
--- /dev/null
+++ b/pfam_gap_rates/OmpA_membrane.gap.json
@@ -0,0 +1 @@
+{"family": "OmpA_membrane", "n_seqs": 146, "length": 219, "gap_rates": [0.8356164383561644, 0.7397260273972602, 0.6232876712328768, 0.5136986301369864, 0.3835616438356164, 0.3082191780821918, 0.2671232876712329, 0.2534246575342466, 0.2534246575342466, 0.2534246575342466, 0.2465753424657534, 0.23972602739726026, 0.23972602739726026, 0.23972602739726026, 0.23972602739726026, 0.23972602739726026, 0.23972602739726026, 0.23972602739726026, 0.2465753424657534, 0.23972602739726026, 0.23972602739726026, 0.23972602739726026, 0.3356164383561644, 0.4041095890410959, 0.9383561643835616, 0.6643835616438356, 0.541095890410959, 0.678082191780822, 0.7808219178082192, 0.8493150684931506, 0.9246575342465754, 0.8904109589041096, 0.7945205479452054, 0.7191780821917808, 0.6575342465753424, 0.3972602739726027, 0.3219178082191781, 0.2465753424657534, 0.1643835616438356, 0.15753424657534246, 0.15753424657534246, 0.1506849315068493, 0.136986301369863, 0.11643835616438356, 0.10273972602739725, 0.10273972602739725, 0.10273972602739725, 0.08904109589041095, 0.08904109589041095, 0.08904109589041095, 0.08904109589041095, 0.08904109589041095, 0.0821917808219178, 0.0821917808219178, 0.0821917808219178, 0.0821917808219178, 0.07534246575342465, 0.08904109589041095, 0.07534246575342465, 0.9178082191780822, 0.9383561643835616, 0.910958904109589, 0.07534246575342465, 0.07534246575342465, 0.0821917808219178, 0.0821917808219178, 0.07534246575342465, 0.0684931506849315, 0.07534246575342465, 0.0684931506849315, 0.0684931506849315, 0.0684931506849315, 0.0684931506849315, 0.0684931506849315, 0.07534246575342465, 0.07534246575342465, 0.0821917808219178, 0.0821917808219178, 0.10273972602739725, 0.2876712328767123, 0.2534246575342466, 0.1780821917808219, 0.5547945205479452, 0.5958904109589042, 0.7397260273972602, 0.7808219178082192, 0.821917808219178, 0.863013698630137, 0.8835616438356164, 0.8287671232876712, 0.821917808219178, 0.7602739726027398, 0.684931506849315, 0.5753424657534246, 0.5068493150684932, 0.136986301369863, 0.08904109589041095, 0.0684931506849315, 0.0684931506849315, 0.07534246575342465, 0.0684931506849315, 0.0547945205479452, 0.0547945205479452, 0.06164383561643835, 0.0547945205479452, 0.0547945205479452, 0.06164383561643835, 0.0547945205479452, 0.0410958904109589, 0.0410958904109589, 0.0410958904109589, 0.0410958904109589, 0.0410958904109589, 0.04794520547945205, 0.0410958904109589, 0.03424657534246575, 0.02054794520547945, 0.02054794520547945, 0.02054794520547945, 0.0136986301369863, 0.0136986301369863, 0.0136986301369863, 0.0136986301369863, 0.0136986301369863, 0.0136986301369863, 0.0136986301369863, 0.0136986301369863, 0.0136986301369863, 0.02054794520547945, 0.02054794520547945, 0.02054794520547945, 0.02054794520547945, 0.0273972602739726, 0.4246575342465753, 0.3972602739726027, 0.3835616438356164, 0.3904109589041096, 0.3698630136986301, 0.3493150684931507, 0.2876712328767123, 0.2808219178082192, 0.2328767123287671, 0.19863013698630136, 0.8082191780821918, 0.9041095890410958, 0.9246575342465754, 0.9383561643835616, 0.910958904109589, 0.8698630136986302, 0.7602739726027398, 0.1232876712328767, 0.0958904109589041, 0.08904109589041095, 0.0821917808219178, 0.04794520547945205, 0.04794520547945205, 0.0547945205479452, 0.0547945205479452, 0.04794520547945205, 0.0547945205479452, 0.0547945205479452, 0.0410958904109589, 0.04794520547945205, 0.04794520547945205, 0.04794520547945205, 0.0547945205479452, 0.06164383561643835, 0.0547945205479452, 0.06164383561643835, 0.0684931506849315, 0.0684931506849315, 0.0547945205479452, 0.06164383561643835, 0.0547945205479452, 0.06164383561643835, 0.0684931506849315, 0.07534246575342465, 0.0821917808219178, 0.0958904109589041, 0.1232876712328767, 0.14383561643835616, 0.17123287671232876, 0.22602739726027396, 0.2328767123287671, 0.2534246575342466, 0.2602739726027397, 0.2465753424657534, 0.2876712328767123, 0.2945205479452055, 0.3219178082191781, 0.363013698630137, 0.3767123287671233, 0.5068493150684932, 0.541095890410959, 0.9178082191780822, 0.9452054794520548, 0.9383561643835616, 0.9041095890410958, 0.8424657534246576, 0.8082191780821918, 0.5616438356164384, 0.4726027397260274, 0.4178082191780822, 0.4041095890410959, 0.4041095890410959, 0.3904109589041096, 0.3835616438356164, 0.3835616438356164, 0.3904109589041096, 0.3904109589041096, 0.3972602739726027, 0.4041095890410959, 0.4315068493150685, 0.4452054794520548, 0.4589041095890411, 0.547945205479452, 0.5821917808219178, 0.7123287671232876, 0.9452054794520548], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/OmpW.gap.json b/pfam_gap_rates/OmpW.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..1ef91098baa7aad7861519401c05a69b150e733c
--- /dev/null
+++ b/pfam_gap_rates/OmpW.gap.json
@@ -0,0 +1 @@
+{"family": "OmpW", "n_seqs": 366, "length": 231, "gap_rates": [0.7759562841530054, 0.3907103825136612, 0.319672131147541, 0.2540983606557377, 0.22950819672131148, 0.2185792349726776, 0.1994535519125683, 0.19672131147540983, 0.19398907103825136, 0.1912568306010929, 0.1912568306010929, 0.1912568306010929, 0.1912568306010929, 0.1885245901639344, 0.1885245901639344, 0.1885245901639344, 0.18579234972677597, 0.1830601092896175, 0.1830601092896175, 0.18579234972677597, 0.1885245901639344, 0.3333333333333333, 0.30601092896174864, 0.6502732240437158, 0.6256830601092896, 0.5300546448087432, 0.4890710382513661, 0.8306010928961749, 0.9153005464480874, 0.9480874316939891, 0.8852459016393442, 0.6967213114754098, 0.3224043715846995, 0.16666666666666666, 0.10382513661202186, 0.09289617486338798, 0.07377049180327869, 0.07103825136612021, 0.06557377049180328, 0.060109289617486336, 0.0546448087431694, 0.0546448087431694, 0.0546448087431694, 0.0546448087431694, 0.0546448087431694, 0.0546448087431694, 0.05191256830601093, 0.04918032786885246, 0.04644808743169399, 0.04371584699453552, 0.03825136612021858, 0.03551912568306011, 0.03278688524590164, 0.03278688524590164, 0.03278688524590164, 0.03278688524590164, 0.03278688524590164, 0.03278688524590164, 0.03278688524590164, 0.03278688524590164, 0.03278688524590164, 0.03278688524590164, 0.03278688524590164, 0.9426229508196722, 0.9426229508196722, 0.9453551912568307, 0.9453551912568307, 0.9453551912568307, 0.9453551912568307, 0.9426229508196722, 0.9398907103825137, 0.03278688524590164, 0.04644808743169399, 0.04918032786885246, 0.04371584699453552, 0.4016393442622951, 0.0546448087431694, 0.040983606557377046, 0.03278688524590164, 0.03278688524590164, 0.03551912568306011, 0.03551912568306011, 0.03551912568306011, 0.03825136612021858, 0.22950819672131148, 0.8524590163934426, 0.9316939890710383, 0.5601092896174863, 0.39344262295081966, 0.3524590163934426, 0.28415300546448086, 0.10655737704918032, 0.0273224043715847, 0.02459016393442623, 0.02185792349726776, 0.02185792349726776, 0.01639344262295082, 0.01639344262295082, 0.01639344262295082, 0.01639344262295082, 0.01366120218579235, 0.01366120218579235, 0.01366120218579235, 0.01366120218579235, 0.01366120218579235, 0.01092896174863388, 0.01092896174863388, 0.01092896174863388, 0.01092896174863388, 0.01092896174863388, 0.6229508196721312, 0.00819672131147541, 0.01912568306010929, 0.03551912568306011, 0.02185792349726776, 0.01092896174863388, 0.00819672131147541, 0.00819672131147541, 0.00819672131147541, 0.00819672131147541, 0.00819672131147541, 0.00819672131147541, 0.00819672131147541, 0.00819672131147541, 0.00819672131147541, 0.02459016393442623, 0.01639344262295082, 0.01092896174863388, 0.01092896174863388, 0.01639344262295082, 0.01912568306010929, 0.01366120218579235, 0.01366120218579235, 0.01092896174863388, 0.01639344262295082, 0.01639344262295082, 0.01639344262295082, 0.0273224043715847, 0.03551912568306011, 0.5300546448087432, 0.5792349726775956, 0.7704918032786885, 0.8360655737704918, 0.8743169398907104, 0.9207650273224044, 0.9316939890710383, 0.9480874316939891, 0.9289617486338798, 0.907103825136612, 0.8579234972677595, 0.8114754098360656, 0.7185792349726776, 0.5491803278688525, 0.43169398907103823, 0.31420765027322406, 0.2103825136612022, 0.07923497267759563, 0.040983606557377046, 0.02459016393442623, 0.01912568306010929, 0.0546448087431694, 0.9480874316939891, 0.01366120218579235, 0.01366120218579235, 0.01366120218579235, 0.01366120218579235, 0.01366120218579235, 0.01366120218579235, 0.01366120218579235, 0.01366120218579235, 0.01366120218579235, 0.01366120218579235, 0.01366120218579235, 0.01366120218579235, 0.01366120218579235, 0.01366120218579235, 0.01639344262295082, 0.01912568306010929, 0.02185792349726776, 0.0273224043715847, 0.02459016393442623, 0.02459016393442623, 0.02459016393442623, 0.0273224043715847, 0.0273224043715847, 0.030054644808743168, 0.030054644808743168, 0.030054644808743168, 0.030054644808743168, 0.03278688524590164, 0.03551912568306011, 0.03551912568306011, 0.03825136612021858, 0.03825136612021858, 0.04371584699453552, 0.04371584699453552, 0.04371584699453552, 0.04371584699453552, 0.04918032786885246, 0.04918032786885246, 0.8114754098360656, 0.9153005464480874, 0.9371584699453552, 0.8715846994535519, 0.7568306010928961, 0.5956284153005464, 0.4180327868852459, 0.40437158469945356, 0.31693989071038253, 0.08196721311475409, 0.06557377049180328, 0.06830601092896176, 0.07103825136612021, 0.05737704918032787, 0.05737704918032787, 0.05737704918032787, 0.05737704918032787, 0.05737704918032787, 0.05737704918032787, 0.060109289617486336, 0.060109289617486336, 0.060109289617486336, 0.060109289617486336, 0.060109289617486336, 0.060109289617486336, 0.060109289617486336, 0.06284153005464481, 0.06557377049180328, 0.06557377049180328, 0.07103825136612021, 0.08469945355191257], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Orn_DAP_Arg_deC.gap.json b/pfam_gap_rates/Orn_DAP_Arg_deC.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..9127d69a41f4b2ec6ebce52f6a7c22fc86a2f6cd
--- /dev/null
+++ b/pfam_gap_rates/Orn_DAP_Arg_deC.gap.json
@@ -0,0 +1 @@
+{"family": "Orn_DAP_Arg_deC", "n_seqs": 4072, "length": 175, "gap_rates": [0.6704322200392927, 0.5488703339882122, 0.5051571709233792, 0.4724950884086444, 0.45211198428290766, 0.4405697445972495, 0.43148330058939094, 0.41920432220039294, 0.41281925343811393, 0.5164538310412574, 0.5198919449901768, 0.5402750491159135, 0.5550098231827112, 0.6404715127701375, 0.681483300589391, 0.7298624754420432, 0.7315815324165029, 0.681483300589391, 0.6033889980353635, 0.24336935166994106, 0.7092337917485265, 0.7259332023575639, 0.7585952848722987, 0.8086935166994106, 0.8460216110019646, 0.8759823182711198, 0.8939096267190569, 0.9076620825147348, 0.918467583497053, 0.9292730844793713, 0.9359037328094303, 0.9405697445972495, 0.9447445972495089, 0.9494106090373281, 0.9474459724950884, 0.9427799607072691, 0.9383595284872298, 0.9319744597249509, 0.9255893909626719, 0.9120825147347741, 0.9029960707269156, 0.888015717092338, 0.8629666011787819, 0.8280943025540275, 0.7843811394891945, 0.7364931237721022, 0.7195481335952849, 0.6932711198428291, 0.112475442043222, 0.1043713163064833, 0.10044204322200392, 0.09774066797642436, 0.09430255402750491, 0.09135559921414538, 0.07662082514734773, 0.0756385068762279, 0.7740667976424361, 0.7929764243614931, 0.8013261296660118, 0.805992141453831, 0.8032907662082515, 0.793713163064833, 0.7861001964636543, 0.7703831041257367, 0.07146365422396857, 0.08865422396856582, 0.0837426326129666, 0.43222003929273084, 0.3607563850687623, 0.3148330058939096, 0.2951866404715128, 0.28388998035363455, 0.2630157170923379, 0.24263261296660119, 0.18983300589390964, 0.21463654223968565, 0.1780451866404715, 0.1456286836935167, 0.10707269155206287, 0.1019155206286837, 0.10265225933202357, 0.10609037328094302, 0.11026522593320236, 0.10093320235756385, 0.1156679764243615, 0.12622789783889982, 0.1512770137524558, 0.2905206286836935, 0.2932220039292731, 0.012278978388998035, 0.1156679764243615, 0.5103143418467584, 0.6969548133595285, 0.7799607072691552, 0.843811394891945, 0.8762278978388998, 0.9162573673870335, 0.93737721021611, 0.8993123772102161, 0.8614931237721022, 0.8082023575638507, 0.7431237721021611, 0.6296660117878192, 0.2175834970530452, 0.06925343811394892, 0.006630648330058939, 0.0068762278978389, 0.0068762278978389, 0.0068762278978389, 0.0063850687622789785, 0.0063850687622789785, 0.006630648330058939, 0.0068762278978389, 0.006139489194499017, 0.0063850687622789785, 0.02038310412573674, 0.006630648330058939, 0.006139489194499017, 0.005893909626719057, 0.20358546168958744, 0.007612966601178782, 0.009823182711198428, 0.008349705304518664, 0.8018172888015717, 0.8541257367387033, 0.8867878192534381, 0.912819253438114, 0.8916994106090373, 0.8570726915520629, 0.8452848722986247, 0.7983791748526523, 0.0063850687622789785, 0.021611001964636542, 0.03192534381139489, 0.24017681728880158, 0.587671905697446, 0.03880157170923379, 0.005157170923379175, 0.8850687622789783, 0.9056974459724951, 0.9182220039292731, 0.9025049115913556, 0.8823673870333988, 0.005157170923379175, 0.004911591355599214, 0.004911591355599214, 0.0054027504911591355, 0.005648330058939097, 0.005648330058939097, 0.005157170923379175, 0.004911591355599214, 0.005893909626719057, 0.005893909626719057, 0.006139489194499017, 0.0073673870333988214, 0.008104125736738703, 0.008349705304518664, 0.009823182711198428, 0.012278978388998035, 0.013506876227897839, 0.014980353634577602, 0.9221512770137524, 0.02455795677799607, 0.02480353634577603, 0.02480353634577603, 0.03413555992141454, 0.03855599214145383, 0.04223968565815324, 0.0481335952848723, 0.058202357563850685, 0.0768664047151277, 0.1181237721021611, 0.19400785854616895, 0.34037328094302555, 0.7239685658153242], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Otopetrin.gap.json b/pfam_gap_rates/Otopetrin.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e170e21035adf8ca8b9c98629a215bded8ba26bb
--- /dev/null
+++ b/pfam_gap_rates/Otopetrin.gap.json
@@ -0,0 +1 @@
+{"family": "Otopetrin", "n_seqs": 460, "length": 525, "gap_rates": [0.6456521739130435, 0.6152173913043478, 0.6, 0.591304347826087, 0.5760869565217391, 0.5630434782608695, 0.5565217391304348, 0.5456521739130434, 0.5456521739130434, 0.5456521739130434, 0.5456521739130434, 0.5456521739130434, 0.5456521739130434, 0.5413043478260869, 0.5413043478260869, 0.5391304347826087, 0.5369565217391304, 0.5369565217391304, 0.5369565217391304, 0.5369565217391304, 0.5369565217391304, 0.5369565217391304, 0.5739130434782609, 0.5673913043478261, 0.5456521739130434, 0.5630434782608695, 0.5695652173913044, 0.9282608695652174, 0.7369565217391304, 0.6804347826086956, 0.6391304347826087, 0.5521739130434783, 0.5347826086956522, 0.532608695652174, 0.5413043478260869, 0.5391304347826087, 0.5391304347826087, 0.5391304347826087, 0.5282608695652173, 0.5282608695652173, 0.5282608695652173, 0.5304347826086957, 0.5217391304347826, 0.5239130434782608, 0.5239130434782608, 0.5239130434782608, 0.5239130434782608, 0.5239130434782608, 0.5239130434782608, 0.5239130434782608, 0.5260869565217391, 0.5260869565217391, 0.5260869565217391, 0.5173913043478261, 0.5173913043478261, 0.5173913043478261, 0.5173913043478261, 0.5173913043478261, 0.5217391304347826, 0.5217391304347826, 0.5195652173913043, 0.5108695652173914, 0.8934782608695652, 0.5065217391304347, 0.5043478260869565, 0.5065217391304347, 0.508695652173913, 0.508695652173913, 0.5260869565217391, 0.5152173913043478, 0.5130434782608696, 0.5108695652173914, 0.508695652173913, 0.508695652173913, 0.5108695652173914, 0.508695652173913, 0.508695652173913, 0.5043478260869565, 0.5043478260869565, 0.5043478260869565, 0.5043478260869565, 0.5043478260869565, 0.5043478260869565, 0.5043478260869565, 0.5043478260869565, 0.5043478260869565, 0.5043478260869565, 0.5043478260869565, 0.5043478260869565, 0.5043478260869565, 0.5043478260869565, 0.5043478260869565, 0.5043478260869565, 0.5043478260869565, 0.5065217391304347, 0.5239130434782608, 0.5369565217391304, 0.5369565217391304, 0.5347826086956522, 0.6260869565217392, 0.6173913043478261, 0.6239130434782608, 0.6217391304347826, 0.6260869565217392, 0.6391304347826087, 0.6608695652173913, 0.6673913043478261, 0.8826086956521739, 0.7152173913043478, 0.7086956521739131, 0.6847826086956522, 0.6847826086956522, 0.6760869565217391, 0.6760869565217391, 0.6739130434782609, 0.6782608695652174, 0.6826086956521739, 0.6891304347826087, 0.6891304347826087, 0.6891304347826087, 0.6956521739130435, 0.6978260869565217, 0.7, 0.7086956521739131, 0.7065217391304348, 0.7108695652173913, 0.8043478260869565, 0.8326086956521739, 0.841304347826087, 0.8565217391304348, 0.8608695652173913, 0.8739130434782608, 0.8608695652173913, 0.9065217391304348, 0.908695652173913, 0.9130434782608695, 0.9152173913043479, 0.9195652173913044, 0.9217391304347826, 0.9304347826086956, 0.9347826086956522, 0.9347826086956522, 0.9369565217391305, 0.9391304347826087, 0.9391304347826087, 0.941304347826087, 0.9434782608695652, 0.9434782608695652, 0.9456521739130435, 0.95, 0.95, 0.95, 0.95, 0.9434782608695652, 0.9434782608695652, 0.9434782608695652, 0.941304347826087, 0.9391304347826087, 0.9391304347826087, 0.9369565217391305, 0.9347826086956522, 0.9326086956521739, 0.9239130434782609, 0.9217391304347826, 0.9173913043478261, 0.9152173913043479, 0.9130434782608695, 0.9065217391304348, 0.9043478260869565, 0.85, 0.8760869565217392, 0.8652173913043478, 0.8521739130434782, 0.8304347826086956, 0.7934782608695652, 0.7739130434782608, 0.741304347826087, 0.7260869565217392, 0.7195652173913043, 0.717391304347826, 0.7108695652173913, 0.7108695652173913, 0.7043478260869566, 0.7, 0.6956521739130435, 0.6847826086956522, 0.6826086956521739, 0.6760869565217391, 0.6695652173913044, 0.6565217391304348, 0.6543478260869565, 0.6478260869565218, 0.6347826086956522, 0.5891304347826087, 0.9391304347826087, 0.941304347826087, 0.941304347826087, 0.941304347826087, 0.941304347826087, 0.9434782608695652, 0.9434782608695652, 0.9434782608695652, 0.9456521739130435, 0.9456521739130435, 0.9478260869565217, 0.95, 0.9478260869565217, 0.9478260869565217, 0.9456521739130435, 0.9434782608695652, 0.9434782608695652, 0.9434782608695652, 0.9434782608695652, 0.941304347826087, 0.941304347826087, 0.941304347826087, 0.9391304347826087, 0.9391304347826087, 0.5782608695652174, 0.5565217391304348, 0.5456521739130434, 0.5391304347826087, 0.5369565217391304, 0.55, 0.5434782608695652, 0.6108695652173913, 0.5760869565217391, 0.5717391304347826, 0.5673913043478261, 0.55, 0.5391304347826087, 0.5065217391304347, 0.4934782608695652, 0.47608695652173916, 0.47391304347826085, 0.4717391304347826, 0.4717391304347826, 0.46956521739130436, 0.46956521739130436, 0.46956521739130436, 0.46956521739130436, 0.4673913043478261, 0.4673913043478261, 0.4673913043478261, 0.4673913043478261, 0.46956521739130436, 0.4652173913043478, 0.4652173913043478, 0.4652173913043478, 0.4652173913043478, 0.46304347826086956, 0.4652173913043478, 0.46304347826086956, 0.46304347826086956, 0.46304347826086956, 0.4608695652173913, 0.45869565217391306, 0.45869565217391306, 0.45869565217391306, 0.4652173913043478, 0.4673913043478261, 0.46956521739130436, 0.4717391304347826, 0.6065217391304348, 0.5847826086956521, 0.6086956521739131, 0.7065217391304348, 0.7043478260869566, 0.7217391304347827, 0.7043478260869566, 0.7021739130434783, 0.941304347826087, 0.9326086956521739, 0.75, 0.7630434782608696, 0.8130434782608695, 0.8369565217391305, 0.8195652173913044, 0.8369565217391305, 0.8391304347826087, 0.8260869565217391, 0.9217391304347826, 0.9195652173913044, 0.8130434782608695, 0.8, 0.758695652173913, 0.7130434782608696, 0.6673913043478261, 0.6543478260869565, 0.6695652173913044, 0.7065217391304348, 0.808695652173913, 0.7695652173913043, 0.7260869565217392, 0.6717391304347826, 0.6456521739130435, 0.6173913043478261, 0.5869565217391305, 0.55, 0.5043478260869565, 0.46304347826086956, 0.4608695652173913, 0.4608695652173913, 0.45652173913043476, 0.45652173913043476, 0.45869565217391306, 0.45869565217391306, 0.4608695652173913, 0.46304347826086956, 0.45869565217391306, 0.45652173913043476, 0.4543478260869565, 0.4543478260869565, 0.44782608695652176, 0.44782608695652176, 0.44782608695652176, 0.44782608695652176, 0.44782608695652176, 0.45, 0.45, 0.45, 0.4434782608695652, 0.44565217391304346, 0.44565217391304346, 0.44565217391304346, 0.4434782608695652, 0.4434782608695652, 0.4391304347826087, 0.4391304347826087, 0.44130434782608696, 0.45, 0.44565217391304346, 0.4434782608695652, 0.44130434782608696, 0.44130434782608696, 0.4369565217391304, 0.4543478260869565, 0.45, 0.508695652173913, 0.4717391304347826, 0.45652173913043476, 0.45, 0.49782608695652175, 0.44565217391304346, 0.44130434782608696, 0.44130434782608696, 0.4369565217391304, 0.4369565217391304, 0.44130434782608696, 0.4369565217391304, 0.95, 0.43043478260869567, 0.43043478260869567, 0.4326086956521739, 0.4326086956521739, 0.4326086956521739, 0.4326086956521739, 0.4326086956521739, 0.4326086956521739, 0.43043478260869567, 0.4326086956521739, 0.4326086956521739, 0.43478260869565216, 0.4369565217391304, 0.4369565217391304, 0.4369565217391304, 0.43478260869565216, 0.43478260869565216, 0.4369565217391304, 0.95, 0.9456521739130435, 0.43478260869565216, 0.43478260869565216, 0.4326086956521739, 0.4282608695652174, 0.4282608695652174, 0.4282608695652174, 0.4282608695652174, 0.43043478260869567, 0.4282608695652174, 0.4260869565217391, 0.9, 0.9108695652173913, 0.9456521739130435, 0.9260869565217391, 0.9021739130434783, 0.8282608695652174, 0.43478260869565216, 0.43478260869565216, 0.4326086956521739, 0.9239130434782609, 0.4369565217391304, 0.43478260869565216, 0.43478260869565216, 0.4326086956521739, 0.4326086956521739, 0.4326086956521739, 0.4326086956521739, 0.4326086956521739, 0.43043478260869567, 0.43043478260869567, 0.43043478260869567, 0.43043478260869567, 0.43043478260869567, 0.43043478260869567, 0.43043478260869567, 0.43043478260869567, 0.4326086956521739, 0.4326086956521739, 0.4326086956521739, 0.4326086956521739, 0.4326086956521739, 0.4326086956521739, 0.4326086956521739, 0.4326086956521739, 0.4326086956521739, 0.4326086956521739, 0.43478260869565216, 0.43478260869565216, 0.5108695652173914, 0.5043478260869565, 0.5, 0.5673913043478261, 0.9260869565217391, 0.9478260869565217, 0.8456521739130435, 0.5608695652173913, 0.45869565217391306, 0.45652173913043476, 0.45652173913043476, 0.45652173913043476, 0.45869565217391306, 0.45, 0.45, 0.44782608695652176, 0.44782608695652176, 0.44565217391304346, 0.44130434782608696, 0.44130434782608696, 0.44130434782608696, 0.4391304347826087, 0.43478260869565216, 0.4369565217391304, 0.4369565217391304, 0.4369565217391304, 0.4369565217391304, 0.4391304347826087, 0.44130434782608696, 0.4391304347826087, 0.4391304347826087, 0.4391304347826087, 0.4217391304347826, 0.41956521739130437, 0.40652173913043477, 0.4043478260869565, 0.4043478260869565, 0.4543478260869565, 0.5065217391304347, 0.48695652173913045, 0.47391304347826085, 0.4608695652173913, 0.45869565217391306, 0.44130434782608696, 0.43478260869565216, 0.43478260869565216, 0.43043478260869567, 0.4282608695652174, 0.4282608695652174, 0.4260869565217391, 0.42391304347826086, 0.42391304347826086, 0.42391304347826086, 0.4260869565217391, 0.43043478260869567, 0.4282608695652174, 0.4260869565217391, 0.4260869565217391, 0.4260869565217391, 0.4260869565217391, 0.4260869565217391, 0.4282608695652174, 0.4282608695652174, 0.43043478260869567, 0.4326086956521739, 0.4326086956521739, 0.4326086956521739, 0.4326086956521739, 0.4326086956521739, 0.43478260869565216, 0.43478260869565216, 0.43478260869565216, 0.4369565217391304, 0.4369565217391304, 0.45217391304347826, 0.4543478260869565, 0.4543478260869565, 0.45869565217391306, 0.4652173913043478, 0.46956521739130436, 0.4652173913043478, 0.45869565217391306, 0.45869565217391306, 0.45869565217391306, 0.4652173913043478, 0.48695652173913045, 0.4956521739130435, 0.48695652173913045, 0.48478260869565215, 0.48695652173913045, 0.46956521739130436, 0.4652173913043478, 0.4652173913043478, 0.46956521739130436, 0.4652173913043478, 0.4652173913043478, 0.4652173913043478, 0.4652173913043478, 0.4652173913043478, 0.4652173913043478, 0.4673913043478261, 0.4673913043478261, 0.4673913043478261, 0.4673913043478261, 0.4673913043478261, 0.5956521739130435], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/P5-ATPase.gap.json b/pfam_gap_rates/P5-ATPase.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a0dd0a1e3d299789286031f8b7906704fa8695b6
--- /dev/null
+++ b/pfam_gap_rates/P5-ATPase.gap.json
@@ -0,0 +1 @@
+{"family": "P5-ATPase", "n_seqs": 365, "length": 161, "gap_rates": [0.536986301369863, 0.3835616438356164, 0.3287671232876712, 0.2876712328767123, 0.25753424657534246, 0.2, 0.13424657534246576, 0.12054794520547946, 0.1095890410958904, 0.10136986301369863, 0.09315068493150686, 0.07945205479452055, 0.06575342465753424, 0.06301369863013699, 0.06301369863013699, 0.06027397260273973, 0.049315068493150684, 0.043835616438356165, 0.0410958904109589, 0.0410958904109589, 0.03561643835616438, 0.03287671232876712, 0.0273972602739726, 0.021917808219178082, 0.01643835616438356, 0.01643835616438356, 0.01643835616438356, 0.0136986301369863, 0.010958904109589041, 0.010958904109589041, 0.010958904109589041, 0.0136986301369863, 0.010958904109589041, 0.010958904109589041, 0.010958904109589041, 0.010958904109589041, 0.010958904109589041, 0.00821917808219178, 0.00821917808219178, 0.00821917808219178, 0.00821917808219178, 0.00821917808219178, 0.019178082191780823, 0.010958904109589041, 0.010958904109589041, 0.019178082191780823, 0.010958904109589041, 0.010958904109589041, 0.010958904109589041, 0.010958904109589041, 0.010958904109589041, 0.010958904109589041, 0.010958904109589041, 0.9452054794520548, 0.936986301369863, 0.010958904109589041, 0.010958904109589041, 0.01643835616438356, 0.01643835616438356, 0.01643835616438356, 0.01643835616438356, 0.019178082191780823, 0.024657534246575342, 0.7068493150684931, 0.8821917808219178, 0.873972602739726, 0.6931506849315069, 0.024657534246575342, 0.030136986301369864, 0.03287671232876712, 0.03287671232876712, 0.03561643835616438, 0.038356164383561646, 0.043835616438356165, 0.043835616438356165, 0.043835616438356165, 0.052054794520547946, 0.057534246575342465, 0.06027397260273973, 0.0684931506849315, 0.08493150684931507, 0.09315068493150686, 0.21643835616438356, 0.20273972602739726, 0.1643835616438356, 0.947945205479452, 0.2465753424657534, 0.947945205479452, 0.18904109589041096, 0.18356164383561643, 0.18356164383561643, 0.18082191780821918, 0.1917808219178082, 0.8794520547945206, 0.9424657534246575, 0.9123287671232877, 0.852054794520548, 0.5917808219178082, 0.6082191780821918, 0.6054794520547945, 0.5643835616438356, 0.5315068493150685, 0.4931506849315068, 0.36712328767123287, 0.33972602739726027, 0.9260273972602739, 0.29863013698630136, 0.29315068493150687, 0.30684931506849317, 0.32054794520547947, 0.36712328767123287, 0.3726027397260274, 0.36164383561643837, 0.4383561643835616, 0.4958904109589041, 0.3589041095890411, 0.6904109589041096, 0.7150684931506849, 0.7479452054794521, 0.7863013698630137, 0.8383561643835616, 0.8712328767123287, 0.8958904109589041, 0.8986301369863013, 0.915068493150685, 0.9342465753424658, 0.947945205479452, 0.9397260273972603, 0.9260273972602739, 0.9095890410958904, 0.8958904109589041, 0.8821917808219178, 0.8575342465753425, 0.8027397260273973, 0.7616438356164383, 0.736986301369863, 0.7013698630136986, 0.684931506849315, 0.32602739726027397, 0.3232876712328767, 0.3041095890410959, 0.2821917808219178, 0.27671232876712326, 0.9041095890410958, 0.3287671232876712, 0.26575342465753427, 0.2602739726027397, 0.2602739726027397, 0.2602739726027397, 0.26575342465753427, 0.26575342465753427, 0.26575342465753427, 0.2684931506849315, 0.2684931506849315, 0.2684931506849315, 0.2684931506849315, 0.2684931506849315, 0.2684931506849315, 0.27123287671232876, 0.28493150684931506, 0.4767123287671233], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PA14_2.gap.json b/pfam_gap_rates/PA14_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b8f3eeeb54cecfbc8e0d6e685631e9eb74f95f31
--- /dev/null
+++ b/pfam_gap_rates/PA14_2.gap.json
@@ -0,0 +1 @@
+{"family": "PA14_2", "n_seqs": 124, "length": 129, "gap_rates": [0.8387096774193549, 0.6129032258064516, 0.3548387096774194, 0.1693548387096774, 0.14516129032258066, 0.04032258064516129, 0.024193548387096774, 0.024193548387096774, 0.024193548387096774, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.08870967741935484, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.008064516129032258, 0.7580645161290323, 0.024193548387096774, 0.0, 0.0, 0.0, 0.008064516129032258, 0.0, 0.0, 0.008064516129032258, 0.0, 0.7016129032258065, 0.7580645161290323, 0.7903225806451613, 0.8467741935483871, 0.9354838709677419, 0.8064516129032258, 0.7903225806451613, 0.717741935483871, 0.6612903225806451, 0.008064516129032258, 0.0, 0.0, 0.008064516129032258, 0.008064516129032258, 0.008064516129032258, 0.016129032258064516, 0.0, 0.1935483870967742, 0.75, 0.8951612903225806, 0.9354838709677419, 0.8306451612903226, 0.6370967741935484, 0.13709677419354838, 0.10483870967741936, 0.06451612903225806, 0.056451612903225805, 0.06451612903225806, 0.056451612903225805, 0.056451612903225805, 0.07258064516129033, 0.06451612903225806, 0.03225806451612903, 0.008064516129032258, 0.008064516129032258, 0.008064516129032258, 0.008064516129032258, 0.016129032258064516, 0.016129032258064516, 0.016129032258064516, 0.016129032258064516, 0.016129032258064516, 0.016129032258064516, 0.016129032258064516, 0.016129032258064516, 0.016129032258064516, 0.016129032258064516, 0.016129032258064516, 0.024193548387096774, 0.04032258064516129, 0.04032258064516129, 0.04032258064516129, 0.04032258064516129, 0.04838709677419355, 0.04838709677419355, 0.056451612903225805, 0.056451612903225805, 0.056451612903225805, 0.07258064516129033, 0.07258064516129033, 0.07258064516129033, 0.08064516129032258, 0.08870967741935484, 0.0967741935483871, 0.12096774193548387, 0.14516129032258066, 0.20967741935483872, 0.25, 0.29838709677419356, 0.3225806451612903, 0.3951612903225806, 0.47580645161290325, 0.9193548387096774, 0.6935483870967742, 0.6612903225806451, 0.6048387096774194, 0.6290322580645161, 0.6532258064516129, 0.7016129032258065, 0.8467741935483871, 0.8870967741935484, 0.9032258064516129, 0.9032258064516129, 0.9354838709677419], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PAN_2.gap.json b/pfam_gap_rates/PAN_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..4ffe573a7c8e829aadadd91ab666a428f5c54251
--- /dev/null
+++ b/pfam_gap_rates/PAN_2.gap.json
@@ -0,0 +1 @@
+{"family": "PAN_2", "n_seqs": 1705, "length": 77, "gap_rates": [0.5782991202346041, 0.9284457478005865, 0.7677419354838709, 0.363049853372434, 0.18651026392961878, 0.1466275659824047, 0.13548387096774195, 0.1155425219941349, 0.10381231671554252, 0.10498533724340176, 0.1032258064516129, 0.0967741935483871, 0.09618768328445748, 0.09325513196480939, 0.0750733137829912, 0.07331378299120235, 0.07272727272727272, 0.06979472140762463, 0.0686217008797654, 0.06686217008797654, 0.16187683284457477, 0.08093841642228738, 0.06099706744868035, 0.05806451612903226, 0.35777126099706746, 0.41524926686217006, 0.15073313782991202, 0.0750733137829912, 0.9436950146627566, 0.015249266862170088, 0.010557184750733138, 0.00997067448680352, 0.008797653958944282, 0.007624633431085044, 0.007624633431085044, 0.007038123167155425, 0.005865102639296188, 0.00469208211143695, 0.004105571847507331, 0.002932551319648094, 0.0017595307917888563, 0.002346041055718475, 0.0035190615835777126, 0.0017595307917888563, 0.002932551319648094, 0.004105571847507331, 0.00469208211143695, 0.016422287390029325, 0.008211143695014663, 0.010557184750733138, 0.01407624633431085, 0.17302052785923755, 0.43636363636363634, 0.4410557184750733, 0.8991202346041056, 0.9390029325513196, 0.6199413489736071, 0.34545454545454546, 0.23225806451612904, 0.8340175953079179, 0.8897360703812317, 0.9073313782991203, 0.8750733137829912, 0.8246334310850439, 0.03577712609970674, 0.02873900293255132, 0.02873900293255132, 0.05102639296187683, 0.07155425219941348, 0.09325513196480939, 0.11671554252199413, 0.13020527859237538, 0.14604105571847506, 0.16363636363636364, 0.1724340175953079, 0.19706744868035192, 0.34310850439882695], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PARP.gap.json b/pfam_gap_rates/PARP.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..79d82550b513050adfe7a87565e5e1af13a6e1ec
--- /dev/null
+++ b/pfam_gap_rates/PARP.gap.json
@@ -0,0 +1 @@
+{"family": "PARP", "n_seqs": 1786, "length": 286, "gap_rates": [0.770996640537514, 0.7402015677491601, 0.7010078387458006, 0.6466965285554311, 0.5806270996640538, 0.561030235162374, 0.5307950727883539, 0.5016797312430011, 0.4888017917133259, 0.4731243001119821, 0.4552071668533035, 0.4417693169092945, 0.42665173572228443, 0.4148936170212766, 0.41097424412094063, 0.406494960806271, 0.39585666293393057, 0.3908174692049272, 0.38689809630459127, 0.38353863381858905, 0.3807390817469205, 0.37569988801791715, 0.37122060470324747, 0.3639417693169093, 0.36114221724524076, 0.36226203807390817, 0.3628219484882419, 0.5358342665173572, 0.5274356103023516, 0.5352743561030235, 0.561030235162374, 0.9120940649496081, 0.9288913773796192, 0.9204927211646137, 0.7318029115341546, 0.5548712206047033, 0.3370660694288914, 0.30011198208286677, 0.2883538633818589, 0.28163493840985443, 0.27547592385218367, 0.2726763717805151, 0.26763717805151177, 0.26595744680851063, 0.2648376259798432, 0.280515117581187, 0.27491601343784994, 0.2558790593505039, 0.2541993281075028, 0.24748040313549832, 0.24356103023516237, 0.2558790593505039, 0.21444568868980962, 0.2026875699888018, 0.1954087346024636, 0.19204927211646136, 0.1875699888017917, 0.2038073908174692, 0.27715565509518475, 0.24692049272116462, 0.578387458006719, 0.6388577827547592, 0.696528555431131, 0.7497200447928332, 0.883538633818589, 0.9227323628219485, 0.9288913773796192, 0.9440089585666294, 0.9462486002239642, 0.9473684210526315, 0.9496080627099664, 0.9490481522956327, 0.9462486002239642, 0.9451287793952967, 0.9400895856662934, 0.9277715565509519, 0.9053751399776035, 0.8421052631578947, 0.7144456886898096, 0.6819708846584547, 0.5923852183650616, 0.5335946248600224, 0.14949608062709965, 0.20772676371780516, 0.10974244120940649, 0.8236282194848824, 0.8544232922732363, 0.9042553191489362, 0.9434490481522956, 0.9232922732362822, 0.8734602463605823, 0.8393057110862262, 0.8157894736842105, 0.08230683090705487, 0.07334826427771557, 0.06438969764837627, 0.06550951847704367, 0.06215005599104143, 0.0593505039193729, 0.05711086226203808, 0.05431131019036954, 0.051511758118701005, 0.09854423292273236, 0.09742441209406495, 0.04703247480403135, 0.04311310190369541, 0.03471444568868981, 0.032474804031354984, 0.031914893617021274, 0.031914893617021274, 0.03135498320268757, 0.030795072788353865, 0.03135498320268757, 0.030235162374020158, 0.42833146696528557, 0.40257558790593506, 0.15565509518477044, 0.11254199328107503, 0.0929451287793953, 0.07950727883538634, 0.048152295632698766, 0.05655095184770437, 0.059910414333706606, 0.22172452407614782, 0.1433370660694289, 0.09910414333706608, 0.07334826427771557, 0.9165733482642777, 0.9238521836506159, 0.9479283314669653, 0.9294512877939529, 0.9204927211646137, 0.9120940649496081, 0.027995520716685332, 0.02631578947368421, 0.025195968645016796, 0.026875699888017916, 0.026875699888017916, 0.02855543113101904, 0.02855543113101904, 0.02855543113101904, 0.030795072788353865, 0.03135498320268757, 0.030235162374020158, 0.040873460246360585, 0.03303471444568869, 0.03303471444568869, 0.03303471444568869, 0.93505039193729, 0.9176931690929452, 0.03471444568868981, 0.03471444568868981, 0.03583426651735722, 0.036954087346024636, 0.07838745800671892, 0.41097424412094063, 0.18477043673012317, 0.13941769316909294, 0.9148936170212766, 0.9316909294512878, 0.944568868980963, 0.9333706606942889, 0.9260918253079508, 0.9036954087346024, 0.1360582306830907, 0.14949608062709965, 0.1534154535274356, 0.14725643896976484, 0.11926091825307951, 0.8594624860022396, 0.8964165733482643, 0.9092945128779395, 0.921612541993281, 0.9294512877939529, 0.9384098544232923, 0.9456886898096305, 0.9440089585666294, 0.9367301231802911, 0.9283314669652856, 0.9171332586786114, 0.9042553191489362, 0.8936170212765957, 0.8421052631578947, 0.11646136618141098, 0.11534154535274356, 0.11590145576707726, 0.1187010078387458, 0.11758118701007839, 0.12038073908174692, 0.12933930571108623, 0.13325867861142218, 0.1360582306830907, 0.13885778275475924, 0.9406494960806271, 0.4563269876819709, 0.4154535274356103, 0.3986562150055991, 0.3997760358342665, 0.41265397536394177, 0.4316909294512878, 0.4423292273236282, 0.4479283314669653, 0.45296752519596867, 0.6618141097424413, 0.4540873460246361, 0.9143337066069429, 0.9070548712206047, 0.43449048152295633, 0.43561030235162373, 0.43729003359462487, 0.44400895856662936, 0.44400895856662936, 0.42665173572228443, 0.4238521836506159, 0.4008958566629339, 0.30291153415453526, 0.30011198208286677, 0.3012318029115342, 0.3057110862262038, 0.31075027995520715, 0.34434490481522956, 0.35666293393057114, 0.3617021276595745, 0.364501679731243, 0.37569988801791715, 0.7284434490481523, 0.9154535274356103, 0.9406494960806271, 0.944568868980963, 0.9372900335946248, 0.7721164613661814, 0.7189249720044792, 0.6948488241881299, 0.6875699888017918, 0.6763717805151176, 0.6685330347144457, 0.64501679731243, 0.6399776035834267, 0.6382978723404256, 0.6013437849944009, 0.7161254199328108, 0.9288913773796192, 0.6914893617021277, 0.4731243001119821, 0.4568868980963046, 0.4496080627099664, 0.4473684210526316, 0.48040313549832026, 0.4798432250839866, 0.8213885778275476, 0.5123180291153415, 0.486562150055991, 0.4720044792833147, 0.4669652855543113, 0.4608062709966405, 0.45352743561030234, 0.4518477043673012, 0.45128779395296753, 0.44344904815229563, 0.8085106382978723, 0.8370660694288914, 0.7810750279955208, 0.38801791713325867, 0.387458006718925, 0.387458006718925, 0.387458006718925, 0.387458006718925, 0.3902575587905935, 0.393057110862262, 0.39361702127659576, 0.39361702127659576, 0.3964165733482643, 0.396976483762598, 0.3975363941769317, 0.3992161254199328, 0.4008958566629339, 0.4048152295632699, 0.40985442329227323, 0.41097424412094063, 0.4148936170212766, 0.41881298992161253, 0.4232922732362822, 0.4339305711086226, 0.4490481522956327, 0.6019036954087346, 0.9221724524076148], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PAS_10.gap.json b/pfam_gap_rates/PAS_10.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c94ae941e4a0c6233443857708e517db258c6a99
--- /dev/null
+++ b/pfam_gap_rates/PAS_10.gap.json
@@ -0,0 +1 @@
+{"family": "PAS_10", "n_seqs": 719, "length": 113, "gap_rates": [0.3866481223922114, 0.16133518776077885, 0.09457579972183588, 0.05146036161335188, 0.027816411682892908, 0.022253129346314324, 0.022253129346314324, 0.02086230876216968, 0.011126564673157162, 0.009735744089012517, 0.005563282336578581, 0.005563282336578581, 0.005563282336578581, 0.005563282336578581, 0.004172461752433936, 0.004172461752433936, 0.004172461752433936, 0.004172461752433936, 0.005563282336578581, 0.0027816411682892906, 0.0027816411682892906, 0.0027816411682892906, 0.0027816411682892906, 0.0027816411682892906, 0.0027816411682892906, 0.0027816411682892906, 0.933240611961057, 0.9346314325452016, 0.9207232267037552, 0.0027816411682892906, 0.059805285118219746, 0.006954102920723227, 0.004172461752433936, 0.004172461752433936, 0.0027816411682892906, 0.0027816411682892906, 0.006954102920723227, 0.004172461752433936, 0.0027816411682892906, 0.0013908205841446453, 0.0027816411682892906, 0.0013908205841446453, 0.004172461752433936, 0.004172461752433936, 0.004172461752433936, 0.0027816411682892906, 0.0013908205841446453, 0.0013908205841446453, 0.0013908205841446453, 0.008344923504867872, 0.008344923504867872, 0.009735744089012517, 0.885952712100139, 0.008344923504867872, 0.005563282336578581, 0.005563282336578581, 0.006954102920723227, 0.008344923504867872, 0.008344923504867872, 0.016689847009735744, 0.013908205841446454, 0.015299026425591099, 0.016689847009735744, 0.015299026425591099, 0.015299026425591099, 0.012517385257301807, 0.012517385257301807, 0.016689847009735744, 0.011126564673157162, 0.012517385257301807, 0.02642559109874826, 0.016689847009735744, 0.03894297635605007, 0.02642559109874826, 0.031988873435326845, 0.07093184979137691, 0.02642559109874826, 0.04033379694019471, 0.05006954102920723, 0.8817802503477051, 0.9485396383866481, 0.8108484005563282, 0.02642559109874826, 0.013908205841446454, 0.013908205841446454, 0.015299026425591099, 0.016689847009735744, 0.01808066759388039, 0.016689847009735744, 0.016689847009735744, 0.015299026425591099, 0.015299026425591099, 0.016689847009735744, 0.016689847009735744, 0.016689847009735744, 0.015299026425591099, 0.03894297635605007, 0.02086230876216968, 0.02086230876216968, 0.025034770514603615, 0.02642559109874826, 0.02642559109874826, 0.031988873435326845, 0.02920723226703755, 0.030598052851182198, 0.030598052851182198, 0.031988873435326845, 0.04033379694019471, 0.05702364394993046, 0.061196105702364396, 0.07927677329624479, 0.11404728789986092, 0.5368567454798331], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PAS_2.gap.json b/pfam_gap_rates/PAS_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..5aa5127fb3c76b3abb1e77f8d1d19e16675375d5
--- /dev/null
+++ b/pfam_gap_rates/PAS_2.gap.json
@@ -0,0 +1 @@
+{"family": "PAS_2", "n_seqs": 486, "length": 133, "gap_rates": [0.2037037037037037, 0.1522633744855967, 0.12345679012345678, 0.09670781893004116, 0.08024691358024691, 0.06995884773662552, 0.06584362139917696, 0.04938271604938271, 0.037037037037037035, 0.026748971193415638, 0.0205761316872428, 0.0205761316872428, 0.0205761316872428, 0.018518518518518517, 0.018518518518518517, 0.018518518518518517, 0.01646090534979424, 0.01646090534979424, 0.018518518518518517, 0.01646090534979424, 0.01646090534979424, 0.026748971193415638, 0.07613168724279835, 0.03909465020576132, 0.8127572016460906, 0.934156378600823, 0.8292181069958847, 0.808641975308642, 0.030864197530864196, 0.0205761316872428, 0.01646090534979424, 0.012345679012345678, 0.00823045267489712, 0.00823045267489712, 0.00823045267489712, 0.0102880658436214, 0.0102880658436214, 0.012345679012345678, 0.0102880658436214, 0.01646090534979424, 0.01440329218106996, 0.01646090534979424, 0.01646090534979424, 0.01646090534979424, 0.026748971193415638, 0.06995884773662552, 0.9094650205761317, 0.9135802469135802, 0.9176954732510288, 0.9238683127572016, 0.9135802469135802, 0.911522633744856, 0.9053497942386831, 0.06584362139917696, 0.102880658436214, 0.09465020576131687, 0.03497942386831276, 0.7510288065843621, 0.7962962962962963, 0.8353909465020576, 0.8436213991769548, 0.8539094650205762, 0.845679012345679, 0.8436213991769548, 0.8024691358024691, 0.7901234567901234, 0.7181069958847737, 0.053497942386831275, 0.06790123456790123, 0.0720164609053498, 0.07613168724279835, 0.06790123456790123, 0.06995884773662552, 0.07407407407407407, 0.06995884773662552, 0.0720164609053498, 0.09259259259259259, 0.08641975308641975, 0.09053497942386832, 0.13168724279835392, 0.10905349794238683, 0.102880658436214, 0.10082304526748971, 0.09876543209876543, 0.102880658436214, 0.1111111111111111, 0.12139917695473251, 0.13168724279835392, 0.14609053497942387, 0.16666666666666666, 0.18930041152263374, 0.1934156378600823, 0.1934156378600823, 0.19958847736625515, 0.25925925925925924, 0.26337448559670784, 0.24897119341563786, 0.2222222222222222, 0.22633744855967078, 0.24074074074074073, 0.23868312757201646, 0.24691358024691357, 0.8621399176954733, 0.3065843621399177, 0.2880658436213992, 0.23868312757201646, 0.7901234567901234, 0.9074074074074074, 0.7366255144032922, 0.23868312757201646, 0.23045267489711935, 0.2366255144032922, 0.23868312757201646, 0.23868312757201646, 0.2366255144032922, 0.2366255144032922, 0.2366255144032922, 0.2366255144032922, 0.2366255144032922, 0.2366255144032922, 0.8909465020576132, 0.23868312757201646, 0.24074074074074073, 0.24691358024691357, 0.2448559670781893, 0.2448559670781893, 0.2448559670781893, 0.2448559670781893, 0.2448559670781893, 0.24897119341563786, 0.2674897119341564, 0.3888888888888889, 0.6707818930041153], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PAS_3.gap.json b/pfam_gap_rates/PAS_3.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d675696098d4381542fc121e9cd837a468b11f8c
--- /dev/null
+++ b/pfam_gap_rates/PAS_3.gap.json
@@ -0,0 +1 @@
+{"family": "PAS_3", "n_seqs": 5000, "length": 91, "gap_rates": [0.4766, 0.218, 0.1362, 0.1082, 0.0918, 0.0832, 0.0744, 0.0714, 0.0644, 0.061, 0.0636, 0.0554, 0.054, 0.0572, 0.0582, 0.056, 0.0574, 0.0474, 0.044, 0.0396, 0.0398, 0.8896, 0.4912, 0.4146, 0.026, 0.0152, 0.0142, 0.0084, 0.0076, 0.0056, 0.0042, 0.0046, 0.0044, 0.0042, 0.009, 0.0056, 0.0044, 0.0042, 0.0036, 0.0032, 0.0036, 0.0026, 0.004, 0.0256, 0.0126, 0.0156, 0.0368, 0.0098, 0.007, 0.006, 0.7218, 0.0466, 0.019, 0.0086, 0.0042, 0.0022, 0.0024, 0.0056, 0.0064, 0.0052, 0.0076, 0.0076, 0.0056, 0.0092, 0.0096, 0.0082, 0.0092, 0.01, 0.01, 0.0114, 0.0148, 0.0182, 0.0222, 0.0284, 0.04, 0.0578, 0.8598, 0.1986, 0.1042, 0.1114, 0.1232, 0.1344, 0.1496, 0.1838, 0.2026, 0.2508, 0.249, 0.2812, 0.3136, 0.416, 0.7702], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PCAF_N.gap.json b/pfam_gap_rates/PCAF_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..96f93f28bfb134359878e2363e32e8cd1e4d28de
--- /dev/null
+++ b/pfam_gap_rates/PCAF_N.gap.json
@@ -0,0 +1 @@
+{"family": "PCAF_N", "n_seqs": 129, "length": 257, "gap_rates": [0.6434108527131783, 0.627906976744186, 0.6124031007751938, 0.5891472868217055, 0.5736434108527132, 0.5581395348837209, 0.5581395348837209, 0.5348837209302325, 0.5271317829457365, 0.5271317829457365, 0.4883720930232558, 0.4883720930232558, 0.4806201550387597, 0.4728682170542636, 0.4418604651162791, 0.4263565891472868, 0.4263565891472868, 0.4186046511627907, 0.40310077519379844, 0.3953488372093023, 0.3875968992248062, 0.37209302325581395, 0.37209302325581395, 0.37209302325581395, 0.3643410852713178, 0.3643410852713178, 0.3643410852713178, 0.3643410852713178, 0.4263565891472868, 0.3643410852713178, 0.29457364341085274, 0.7984496124031008, 0.29457364341085274, 0.2868217054263566, 0.2868217054263566, 0.2868217054263566, 0.2868217054263566, 0.2868217054263566, 0.2868217054263566, 0.5038759689922481, 0.9069767441860465, 0.5271317829457365, 0.4573643410852713, 0.5503875968992248, 0.4263565891472868, 0.4263565891472868, 0.9302325581395349, 0.9147286821705426, 0.4496124031007752, 0.40310077519379844, 0.4108527131782946, 0.3875968992248062, 0.37209302325581395, 0.3488372093023256, 0.32558139534883723, 0.29457364341085274, 0.29457364341085274, 0.27906976744186046, 0.27906976744186046, 0.27906976744186046, 0.27906976744186046, 0.27906976744186046, 0.2713178294573643, 0.2713178294573643, 0.2713178294573643, 0.2713178294573643, 0.26356589147286824, 0.8992248062015504, 0.8992248062015504, 0.27906976744186046, 0.26356589147286824, 0.26356589147286824, 0.26356589147286824, 0.31007751937984496, 0.29457364341085274, 0.29457364341085274, 0.2558139534883721, 0.2558139534883721, 0.2558139534883721, 0.24806201550387597, 0.24031007751937986, 0.24806201550387597, 0.24031007751937986, 0.2248062015503876, 0.2248062015503876, 0.2248062015503876, 0.23255813953488372, 0.23255813953488372, 0.23255813953488372, 0.20930232558139536, 0.20930232558139536, 0.20930232558139536, 0.20930232558139536, 0.20930232558139536, 0.20155038759689922, 0.18604651162790697, 0.18604651162790697, 0.18604651162790697, 0.18604651162790697, 0.18604651162790697, 0.18604651162790697, 0.18604651162790697, 0.18604651162790697, 0.18604651162790697, 0.18604651162790697, 0.18604651162790697, 0.18604651162790697, 0.18604651162790697, 0.18604651162790697, 0.18604651162790697, 0.18604651162790697, 0.1937984496124031, 0.1937984496124031, 0.1937984496124031, 0.20155038759689922, 0.20155038759689922, 0.1937984496124031, 0.1937984496124031, 0.1937984496124031, 0.1937984496124031, 0.1937984496124031, 0.20930232558139536, 0.20930232558139536, 0.1937984496124031, 0.20155038759689922, 0.20155038759689922, 0.20155038759689922, 0.20155038759689922, 0.20930232558139536, 0.20930232558139536, 0.23255813953488372, 0.21705426356589147, 0.1937984496124031, 0.1937984496124031, 0.1937984496124031, 0.1937984496124031, 0.1937984496124031, 0.1937984496124031, 0.20155038759689922, 0.20930232558139536, 0.23255813953488372, 0.2558139534883721, 0.2558139534883721, 0.24031007751937986, 0.1937984496124031, 0.1937984496124031, 0.1937984496124031, 0.1937984496124031, 0.18604651162790697, 0.18604651162790697, 0.1937984496124031, 0.17829457364341086, 0.17054263565891473, 0.14728682170542637, 0.13953488372093023, 0.13953488372093023, 0.13953488372093023, 0.13953488372093023, 0.13953488372093023, 0.14728682170542637, 0.14728682170542637, 0.16279069767441862, 0.15503875968992248, 0.16279069767441862, 0.16279069767441862, 0.24806201550387597, 0.2713178294573643, 0.15503875968992248, 0.16279069767441862, 0.14728682170542637, 0.14728682170542637, 0.14728682170542637, 0.14728682170542637, 0.14728682170542637, 0.14728682170542637, 0.14728682170542637, 0.14728682170542637, 0.14728682170542637, 0.14728682170542637, 0.14728682170542637, 0.14728682170542637, 0.14728682170542637, 0.14728682170542637, 0.14728682170542637, 0.14728682170542637, 0.14728682170542637, 0.14728682170542637, 0.14728682170542637, 0.14728682170542637, 0.14728682170542637, 0.14728682170542637, 0.14728682170542637, 0.15503875968992248, 0.14728682170542637, 0.14728682170542637, 0.16279069767441862, 0.15503875968992248, 0.14728682170542637, 0.15503875968992248, 0.27906976744186046, 0.24031007751937986, 0.17054263565891473, 0.14728682170542637, 0.14728682170542637, 0.13178294573643412, 0.13953488372093023, 0.13953488372093023, 0.13953488372093023, 0.13953488372093023, 0.13953488372093023, 0.13953488372093023, 0.13953488372093023, 0.13178294573643412, 0.13178294573643412, 0.13178294573643412, 0.13953488372093023, 0.13953488372093023, 0.14728682170542637, 0.14728682170542637, 0.14728682170542637, 0.16279069767441862, 0.17054263565891473, 0.16279069767441862, 0.16279069767441862, 0.16279069767441862, 0.15503875968992248, 0.15503875968992248, 0.15503875968992248, 0.15503875968992248, 0.15503875968992248, 0.15503875968992248, 0.15503875968992248, 0.15503875968992248, 0.15503875968992248, 0.15503875968992248, 0.15503875968992248, 0.15503875968992248, 0.15503875968992248, 0.16279069767441862, 0.16279069767441862, 0.16279069767441862, 0.16279069767441862, 0.16279069767441862, 0.16279069767441862, 0.16279069767441862, 0.17829457364341086, 0.18604651162790697, 0.1937984496124031, 0.21705426356589147, 0.24806201550387597, 0.27906976744186046, 0.29457364341085274, 0.29457364341085274, 0.29457364341085274, 0.32558139534883723, 0.3643410852713178, 0.46511627906976744], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PD40.gap.json b/pfam_gap_rates/PD40.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..40d21e06d49745a587add9124dab94565e0e750f
--- /dev/null
+++ b/pfam_gap_rates/PD40.gap.json
@@ -0,0 +1 @@
+{"family": "PD40", "n_seqs": 5000, "length": 41, "gap_rates": [0.9452, 0.7108, 0.6154, 0.5462, 0.4948, 0.4576, 0.4196, 0.3806, 0.3442, 0.3186, 0.2456, 0.179, 0.1074, 0.0628, 0.0324, 0.0082, 0.0064, 0.0074, 0.0066, 0.0036, 0.0316, 0.0036, 0.0026, 0.0064, 0.026, 0.068, 0.1422, 0.194, 0.2634, 0.278, 0.8564, 0.9446, 0.8002, 0.758, 0.3762, 0.4074, 0.4378, 0.4628, 0.485, 0.5198, 0.7138], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PEMT.gap.json b/pfam_gap_rates/PEMT.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..00cb32116c2cad0459d2a3f7163363f4998631cf
--- /dev/null
+++ b/pfam_gap_rates/PEMT.gap.json
@@ -0,0 +1 @@
+{"family": "PEMT", "n_seqs": 1643, "length": 109, "gap_rates": [0.8253195374315276, 0.6755934266585514, 0.44613511868533173, 0.34205721241631165, 0.27754108338405353, 0.2525867315885575, 0.23067559342665855, 0.2209373097991479, 0.21363359707851493, 0.209373097991479, 0.20450395617772368, 0.19963481436396835, 0.19476567255021301, 0.18867924528301888, 0.18807060255629945, 0.1856360316494218, 0.18381010346926355, 0.18259281801582472, 0.17589774802191113, 0.17163724893487523, 0.16859403530127814, 0.1667681071211199, 0.16129032258064516, 0.15824710894704808, 0.16007303712720633, 0.15824710894704808, 0.1704199634814364, 0.15763846622032868, 0.15824710894704808, 0.19598295800365187, 0.18746195982958003, 0.19841752891052952, 0.24589166159464396, 0.527084601339014, 0.4449178332318929, 0.14242239805234327, 0.0967741935483871, 0.05112598904443092, 0.021911138161898967, 0.9093122337188071, 0.9415702982349361, 0.8539257455873402, 0.010346926354230066, 0.005477784540474742, 0.005477784540474742, 0.004869141813755326, 0.002434570906877663, 0.002434570906877663, 0.002434570906877663, 0.002434570906877663, 0.0030432136335970784, 0.005477784540474742, 0.002434570906877663, 0.0030432136335970784, 0.002434570906877663, 0.0018259281801582471, 0.0018259281801582471, 0.00852099817407182, 0.002434570906877663, 0.0030432136335970784, 0.00426049908703591, 0.005477784540474742, 0.0018259281801582471, 0.0012172854534388314, 0.002434570906877663, 0.0036518563603164943, 0.0036518563603164943, 0.0030432136335970784, 0.005477784540474742, 0.006086427267194157, 0.007912355447352405, 0.01278149726110773, 0.012172854534388313, 0.013390139987827145, 0.01278149726110773, 0.015216068167985392, 0.11442483262325015, 0.9482653682288497, 0.03408399269628728, 0.023128423615337797, 0.02251978088861838, 0.02008520998174072, 0.019476567255021303, 0.02556299452221546, 0.02251978088861838, 0.02130249543517955, 0.024345709068776627, 0.02678027997565429, 0.026171637248934874, 0.028606208155812538, 0.02678027997565429, 0.0310407790626902, 0.032866707242848445, 0.04077906269020085, 0.33049300060864273, 0.044430919050517347, 0.03530127814972611, 0.041387705416920266, 0.0505173463177115, 0.057212416311625075, 0.06755934266585514, 0.08581862446743761, 0.11929397443700548, 0.1509433962264151, 0.1667681071211199, 0.18259281801582472, 0.2860620815581254, 0.5143031040779062, 0.780279975654291], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PEPCK.gap.json b/pfam_gap_rates/PEPCK.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..037f12e31fa8a1e4b29dbf9a4d277aaceac72ff1
--- /dev/null
+++ b/pfam_gap_rates/PEPCK.gap.json
@@ -0,0 +1 @@
+{"family": "PEPCK", "n_seqs": 763, "length": 629, "gap_rates": [0.5674967234600262, 0.20052424639580602, 0.17038007863695936, 0.16644823066841416, 0.16382699868938402, 0.16120576671035386, 0.16120576671035386, 0.16120576671035386, 0.1598951507208388, 0.15465268676277852, 0.15465268676277852, 0.15465268676277852, 0.15334207077326342, 0.15334207077326342, 0.15334207077326342, 0.15334207077326342, 0.15334207077326342, 0.15334207077326342, 0.15334207077326342, 0.15465268676277852, 0.1559633027522936, 0.1598951507208388, 0.1598951507208388, 0.15727391874180865, 0.1598951507208388, 0.15727391874180865, 0.15072083879423329, 0.14941022280471822, 0.14941022280471822, 0.14941022280471822, 0.14941022280471822, 0.14941022280471822, 0.14941022280471822, 0.14941022280471822, 0.14941022280471822, 0.14809960681520315, 0.14809960681520315, 0.14809960681520315, 0.14809960681520315, 0.14809960681520315, 0.145478374836173, 0.4954128440366973, 0.4875491480996068, 0.22804718217562253, 0.16644823066841416, 0.145478374836173, 0.145478374836173, 0.14416775884665792, 0.14678899082568808, 0.14678899082568808, 0.14678899082568808, 0.14678899082568808, 0.14678899082568808, 0.14678899082568808, 0.14678899082568808, 0.14941022280471822, 0.14941022280471822, 0.15072083879423329, 0.15203145478374835, 0.1559633027522936, 0.15465268676277852, 0.15072083879423329, 0.14941022280471822, 0.14941022280471822, 0.14941022280471822, 0.14941022280471822, 0.14941022280471822, 0.14941022280471822, 0.15072083879423329, 0.15072083879423329, 0.15072083879423329, 0.15072083879423329, 0.15072083879423329, 0.15203145478374835, 0.15203145478374835, 0.14941022280471822, 0.8073394495412844, 0.8086500655307994, 0.8086500655307994, 0.8112712975098296, 0.8374836173001311, 0.8086500655307994, 0.8086500655307994, 0.8073394495412844, 0.8060288335517694, 0.1598951507208388, 0.14941022280471822, 0.14941022280471822, 0.14678899082568808, 0.14678899082568808, 0.14678899082568808, 0.145478374836173, 0.145478374836173, 0.14678899082568808, 0.14678899082568808, 0.14809960681520315, 0.14678899082568808, 0.14678899082568808, 0.145478374836173, 0.14416775884665792, 0.14416775884665792, 0.14416775884665792, 0.14416775884665792, 0.14416775884665792, 0.14416775884665792, 0.14416775884665792, 0.14416775884665792, 0.145478374836173, 0.14285714285714285, 0.14285714285714285, 0.14285714285714285, 0.14285714285714285, 0.14416775884665792, 0.14154652686762778, 0.14285714285714285, 0.14285714285714285, 0.14285714285714285, 0.14285714285714285, 0.14416775884665792, 0.14416775884665792, 0.1402359108781127, 0.1402359108781127, 0.14154652686762778, 0.14154652686762778, 0.14154652686762778, 0.14285714285714285, 0.14285714285714285, 0.14285714285714285, 0.14285714285714285, 0.14285714285714285, 0.14285714285714285, 0.14285714285714285, 0.14285714285714285, 0.14285714285714285, 0.14154652686762778, 0.14154652686762778, 0.14154652686762778, 0.14154652686762778, 0.14154652686762778, 0.14154652686762778, 0.14154652686762778, 0.1402359108781127, 0.1402359108781127, 0.1402359108781127, 0.1349934469200524, 0.1349934469200524, 0.13368283093053734, 0.1310615989515072, 0.1310615989515072, 0.1310615989515072, 0.1310615989515072, 0.13237221494102228, 0.1310615989515072, 0.13237221494102228, 0.13237221494102228, 0.13368283093053734, 0.13368283093053734, 0.13368283093053734, 0.13368283093053734, 0.13368283093053734, 0.3289646133682831, 0.1651376146788991, 0.9331585845347313, 0.1402359108781127, 0.13237221494102228, 0.13237221494102228, 0.13237221494102228, 0.1310615989515072, 0.1310615989515072, 0.1310615989515072, 0.13237221494102228, 0.13237221494102228, 0.13237221494102228, 0.13237221494102228, 0.13237221494102228, 0.145478374836173, 0.14941022280471822, 0.9384010484927916, 0.4849279161205767, 0.2503276539973788, 0.2490170380078637, 0.23591087811271297, 0.22411533420707733, 0.22935779816513763, 0.817824377457405, 0.24770642201834864, 0.3053735255570118, 0.8505897771952818, 0.3040629095674967, 0.29357798165137616, 0.2529488859764089, 0.1874180865006553, 0.13761467889908258, 0.9475753604193972, 0.6238532110091743, 0.13368283093053734, 0.13368283093053734, 0.13368283093053734, 0.13368283093053734, 0.12975098296199214, 0.12844036697247707, 0.12844036697247707, 0.12844036697247707, 0.12844036697247707, 0.12844036697247707, 0.12844036697247707, 0.12844036697247707, 0.12844036697247707, 0.12844036697247707, 0.12844036697247707, 0.12844036697247707, 0.12844036697247707, 0.127129750982962, 0.127129750982962, 0.13761467889908258, 0.127129750982962, 0.127129750982962, 0.1258191349934469, 0.1258191349934469, 0.1258191349934469, 0.1258191349934469, 0.1258191349934469, 0.127129750982962, 0.127129750982962, 0.19528178243774574, 0.127129750982962, 0.127129750982962, 0.127129750982962, 0.127129750982962, 0.127129750982962, 0.127129750982962, 0.127129750982962, 0.12844036697247707, 0.12844036697247707, 0.12844036697247707, 0.12844036697247707, 0.12975098296199214, 0.12975098296199214, 0.12975098296199214, 0.12844036697247707, 0.12844036697247707, 0.12844036697247707, 0.12844036697247707, 0.12844036697247707, 0.1258191349934469, 0.1258191349934469, 0.12450851900393185, 0.12450851900393185, 0.12057667103538663, 0.12319790301441677, 0.12319790301441677, 0.12319790301441677, 0.127129750982962, 0.12975098296199214, 0.12975098296199214, 0.1310615989515072, 0.12975098296199214, 0.12975098296199214, 0.12975098296199214, 0.12975098296199214, 0.12975098296199214, 0.1310615989515072, 0.1310615989515072, 0.12975098296199214, 0.12975098296199214, 0.1310615989515072, 0.1310615989515072, 0.13237221494102228, 0.13237221494102228, 0.13237221494102228, 0.13237221494102228, 0.13237221494102228, 0.13237221494102228, 0.13237221494102228, 0.1310615989515072, 0.13237221494102228, 0.1349934469200524, 0.1349934469200524, 0.16382699868938402, 0.7352555701179554, 0.8990825688073395, 0.8872870249017037, 0.7352555701179554, 0.19790301441677588, 0.19790301441677588, 0.19790301441677588, 0.19790301441677588, 0.19790301441677588, 0.19921363040629095, 0.14416775884665792, 0.1349934469200524, 0.1349934469200524, 0.1349934469200524, 0.13368283093053734, 0.13368283093053734, 0.13368283093053734, 0.13368283093053734, 0.13368283093053734, 0.1310615989515072, 0.12975098296199214, 0.12975098296199214, 0.12975098296199214, 0.18086500655307994, 0.1310615989515072, 0.1310615989515072, 0.14154652686762778, 0.12975098296199214, 0.12975098296199214, 0.12975098296199214, 0.12975098296199214, 0.12975098296199214, 0.12975098296199214, 0.12975098296199214, 0.12975098296199214, 0.13237221494102228, 0.1349934469200524, 0.1363040629095675, 0.1363040629095675, 0.1363040629095675, 0.1363040629095675, 0.1363040629095675, 0.13892529488859764, 0.13761467889908258, 0.13761467889908258, 0.13761467889908258, 0.13761467889908258, 0.13761467889908258, 0.13761467889908258, 0.13761467889908258, 0.13761467889908258, 0.1402359108781127, 0.1363040629095675, 0.1363040629095675, 0.1363040629095675, 0.1363040629095675, 0.8283093053735255, 0.1363040629095675, 0.1402359108781127, 0.1363040629095675, 0.9384010484927916, 0.9174311926605505, 0.1363040629095675, 0.1363040629095675, 0.1363040629095675, 0.1363040629095675, 0.1363040629095675, 0.1363040629095675, 0.1363040629095675, 0.1349934469200524, 0.15072083879423329, 0.9187418086500655, 0.13761467889908258, 0.1349934469200524, 0.1349934469200524, 0.13368283093053734, 0.1363040629095675, 0.1363040629095675, 0.13761467889908258, 0.13761467889908258, 0.13761467889908258, 0.13761467889908258, 0.13761467889908258, 0.20052424639580602, 0.14285714285714285, 0.15858453473132372, 0.14154652686762778, 0.8243774574049804, 0.9226736566186108, 0.8007863695937091, 0.1651376146788991, 0.15334207077326342, 0.14678899082568808, 0.14678899082568808, 0.145478374836173, 0.145478374836173, 0.14416775884665792, 0.14416775884665792, 0.19921363040629095, 0.14285714285714285, 0.14285714285714285, 0.145478374836173, 0.14416775884665792, 0.21494102228047182, 0.8702490170380078, 0.7260812581913499, 0.21231979030144169, 0.2346002621231979, 0.25557011795543905, 0.8505897771952818, 0.9043250327653998, 0.9318479685452162, 0.8872870249017037, 0.7955439056356488, 0.54521625163827, 0.20445609436435125, 0.14809960681520315, 0.14678899082568808, 0.14678899082568808, 0.14678899082568808, 0.14678899082568808, 0.14678899082568808, 0.14678899082568808, 0.14678899082568808, 0.145478374836173, 0.145478374836173, 0.14416775884665792, 0.14416775884665792, 0.14416775884665792, 0.14285714285714285, 0.14154652686762778, 0.14154652686762778, 0.14154652686762778, 0.13892529488859764, 0.13892529488859764, 0.13892529488859764, 0.13892529488859764, 0.14154652686762778, 0.1402359108781127, 0.1402359108781127, 0.14285714285714285, 0.14285714285714285, 0.13892529488859764, 0.13892529488859764, 0.13761467889908258, 0.1363040629095675, 0.1363040629095675, 0.13761467889908258, 0.13892529488859764, 0.1402359108781127, 0.1402359108781127, 0.13892529488859764, 0.13892529488859764, 0.13892529488859764, 0.13761467889908258, 0.13761467889908258, 0.13761467889908258, 0.13761467889908258, 0.13892529488859764, 0.13892529488859764, 0.13892529488859764, 0.13892529488859764, 0.1402359108781127, 0.1402359108781127, 0.13892529488859764, 0.13892529488859764, 0.13892529488859764, 0.13892529488859764, 0.13892529488859764, 0.13892529488859764, 0.13892529488859764, 0.1402359108781127, 0.14154652686762778, 0.14154652686762778, 0.14154652686762778, 0.14154652686762778, 0.14154652686762778, 0.13892529488859764, 0.13892529488859764, 0.13892529488859764, 0.13892529488859764, 0.13892529488859764, 0.1402359108781127, 0.14154652686762778, 0.14285714285714285, 0.13892529488859764, 0.1402359108781127, 0.1402359108781127, 0.1402359108781127, 0.13761467889908258, 0.1363040629095675, 0.16120576671035386, 0.15727391874180865, 0.13368283093053734, 0.13368283093053734, 0.13368283093053734, 0.13368283093053734, 0.1310615989515072, 0.1310615989515072, 0.12844036697247707, 0.12844036697247707, 0.12844036697247707, 0.12844036697247707, 0.12975098296199214, 0.12975098296199214, 0.1310615989515072, 0.1310615989515072, 0.1310615989515072, 0.1310615989515072, 0.1310615989515072, 0.1310615989515072, 0.1310615989515072, 0.1310615989515072, 0.1310615989515072, 0.1310615989515072, 0.1310615989515072, 0.1310615989515072, 0.1310615989515072, 0.1310615989515072, 0.13761467889908258, 0.13761467889908258, 0.4534731323722149, 0.8715596330275229, 0.8977719528178244, 0.6802096985583224, 0.1598951507208388, 0.1363040629095675, 0.13368283093053734, 0.12975098296199214, 0.12844036697247707, 0.12844036697247707, 0.12844036697247707, 0.12844036697247707, 0.12844036697247707, 0.127129750982962, 0.127129750982962, 0.127129750982962, 0.127129750982962, 0.127129750982962, 0.12844036697247707, 0.12844036697247707, 0.13892529488859764, 0.1349934469200524, 0.1310615989515072, 0.13368283093053734, 0.1310615989515072, 0.12975098296199214, 0.1310615989515072, 0.19528178243774574, 0.15727391874180865, 0.15072083879423329, 0.15072083879423329, 0.15072083879423329, 0.15072083879423329, 0.15072083879423329, 0.15072083879423329, 0.15072083879423329, 0.1258191349934469, 0.1258191349934469, 0.1258191349934469, 0.1258191349934469, 0.1258191349934469, 0.1258191349934469, 0.1258191349934469, 0.1258191349934469, 0.1258191349934469, 0.12450851900393185, 0.8519003931847968, 0.1598951507208388, 0.127129750982962, 0.1310615989515072, 0.12844036697247707, 0.127129750982962, 0.127129750982962, 0.127129750982962, 0.127129750982962, 0.127129750982962, 0.127129750982962, 0.127129750982962, 0.127129750982962, 0.127129750982962, 0.127129750982962, 0.12844036697247707, 0.13761467889908258, 0.13892529488859764, 0.14678899082568808, 0.17038007863695936, 0.16644823066841416, 0.14809960681520315, 0.1363040629095675, 0.13237221494102228, 0.9056356487549148, 0.9318479685452162, 0.9357798165137615, 0.9436435124508519, 0.9331585845347313, 0.926605504587156, 0.8519003931847968, 0.33551769331585846, 0.28309305373525556, 0.16120576671035386, 0.1349934469200524, 0.13237221494102228, 0.13237221494102228, 0.13237221494102228, 0.13237221494102228, 0.13237221494102228, 0.13237221494102228, 0.13237221494102228, 0.13237221494102228, 0.13237221494102228, 0.13237221494102228, 0.13237221494102228, 0.13368283093053734, 0.13368283093053734, 0.13368283093053734, 0.1349934469200524, 0.1349934469200524, 0.1349934469200524, 0.1363040629095675, 0.1349934469200524, 0.1363040629095675, 0.1363040629095675, 0.1363040629095675, 0.1363040629095675, 0.1363040629095675, 0.1363040629095675, 0.7955439056356488, 0.1363040629095675, 0.13892529488859764, 0.17562254259501967, 0.16251638269986893, 0.1874180865006553, 0.14941022280471822, 0.14678899082568808, 0.14678899082568808, 0.14809960681520315, 0.14809960681520315, 0.14809960681520315, 0.14809960681520315, 0.14809960681520315, 0.15072083879423329, 0.15334207077326342, 0.16251638269986893, 0.1874180865006553, 0.1913499344692005, 0.21363040629095675, 0.2254259501965924, 0.2621231979030144, 0.3669724770642202], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PEP_hydrolase.gap.json b/pfam_gap_rates/PEP_hydrolase.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f70282a4bb233a18eeac66dcb6d74792d5378dfe
--- /dev/null
+++ b/pfam_gap_rates/PEP_hydrolase.gap.json
@@ -0,0 +1 @@
+{"family": "PEP_hydrolase", "n_seqs": 256, "length": 268, "gap_rates": [0.6171875, 0.234375, 0.140625, 0.12890625, 0.12890625, 0.125, 0.1171875, 0.1171875, 0.11328125, 0.1015625, 0.1015625, 0.09765625, 0.09765625, 0.09765625, 0.09765625, 0.09375, 0.09375, 0.0859375, 0.08203125, 0.078125, 0.078125, 0.07421875, 0.07421875, 0.07421875, 0.07421875, 0.07421875, 0.07421875, 0.07421875, 0.07421875, 0.07421875, 0.07421875, 0.07421875, 0.07421875, 0.07421875, 0.07421875, 0.07421875, 0.0703125, 0.0703125, 0.0703125, 0.0625, 0.0625, 0.0625, 0.0625, 0.0625, 0.0625, 0.0625, 0.0625, 0.05859375, 0.0546875, 0.0546875, 0.0546875, 0.05859375, 0.05859375, 0.0546875, 0.0546875, 0.0546875, 0.0546875, 0.0546875, 0.0546875, 0.05078125, 0.05078125, 0.05078125, 0.05078125, 0.05078125, 0.05078125, 0.0546875, 0.0546875, 0.0546875, 0.0546875, 0.05859375, 0.0546875, 0.0546875, 0.82421875, 0.0546875, 0.05078125, 0.05078125, 0.05078125, 0.05078125, 0.05078125, 0.05078125, 0.06640625, 0.05078125, 0.0546875, 0.05078125, 0.046875, 0.04296875, 0.04296875, 0.04296875, 0.04296875, 0.046875, 0.046875, 0.046875, 0.046875, 0.046875, 0.046875, 0.046875, 0.04296875, 0.04296875, 0.04296875, 0.05078125, 0.05078125, 0.05078125, 0.05078125, 0.05078125, 0.05078125, 0.05078125, 0.0546875, 0.0546875, 0.0546875, 0.05859375, 0.05859375, 0.05859375, 0.05078125, 0.05078125, 0.05078125, 0.05859375, 0.0546875, 0.0546875, 0.0546875, 0.0546875, 0.0546875, 0.0546875, 0.0546875, 0.0546875, 0.0546875, 0.046875, 0.046875, 0.05078125, 0.05078125, 0.05078125, 0.05078125, 0.05078125, 0.05078125, 0.05078125, 0.05078125, 0.0546875, 0.0546875, 0.05078125, 0.05078125, 0.05078125, 0.046875, 0.04296875, 0.04296875, 0.04296875, 0.04296875, 0.04296875, 0.04296875, 0.04296875, 0.04296875, 0.046875, 0.046875, 0.046875, 0.046875, 0.046875, 0.046875, 0.046875, 0.046875, 0.04296875, 0.04296875, 0.04296875, 0.04296875, 0.04296875, 0.04296875, 0.04296875, 0.04296875, 0.04296875, 0.04296875, 0.04296875, 0.04296875, 0.04296875, 0.04296875, 0.04296875, 0.04296875, 0.04296875, 0.04296875, 0.046875, 0.046875, 0.046875, 0.046875, 0.046875, 0.046875, 0.046875, 0.046875, 0.046875, 0.05078125, 0.046875, 0.05078125, 0.05078125, 0.05078125, 0.05078125, 0.0546875, 0.0546875, 0.0546875, 0.0546875, 0.0546875, 0.0546875, 0.05078125, 0.05078125, 0.0546875, 0.0546875, 0.0546875, 0.0546875, 0.05078125, 0.05078125, 0.0546875, 0.0546875, 0.0625, 0.0625, 0.0625, 0.05859375, 0.05859375, 0.0625, 0.0625, 0.0625, 0.0625, 0.06640625, 0.06640625, 0.06640625, 0.06640625, 0.06640625, 0.06640625, 0.06640625, 0.0703125, 0.0703125, 0.0703125, 0.078125, 0.078125, 0.078125, 0.078125, 0.078125, 0.078125, 0.08203125, 0.08203125, 0.08203125, 0.22265625, 0.08203125, 0.08984375, 0.08203125, 0.08203125, 0.08203125, 0.08203125, 0.08203125, 0.08203125, 0.08203125, 0.08203125, 0.08203125, 0.08203125, 0.08203125, 0.08203125, 0.08203125, 0.08203125, 0.08203125, 0.08203125, 0.08203125, 0.08203125, 0.08203125, 0.08203125, 0.08203125, 0.08203125, 0.08203125, 0.08203125, 0.08203125, 0.0859375, 0.0859375, 0.0859375, 0.08984375, 0.12890625, 0.5859375], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PH_2.gap.json b/pfam_gap_rates/PH_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e81e23f8de5b2f8a2e735c054e89846e29472d8b
--- /dev/null
+++ b/pfam_gap_rates/PH_2.gap.json
@@ -0,0 +1 @@
+{"family": "PH_2", "n_seqs": 197, "length": 109, "gap_rates": [0.3147208121827411, 0.10152284263959391, 0.10152284263959391, 0.10152284263959391, 0.10152284263959391, 0.09644670050761421, 0.09644670050761421, 0.09137055837563451, 0.09137055837563451, 0.08629441624365482, 0.09644670050761421, 0.08629441624365482, 0.08629441624365482, 0.08629441624365482, 0.08629441624365482, 0.08629441624365482, 0.08629441624365482, 0.08629441624365482, 0.08629441624365482, 0.08629441624365482, 0.08629441624365482, 0.08629441624365482, 0.08629441624365482, 0.14213197969543148, 0.08121827411167512, 0.08121827411167512, 0.07106598984771574, 0.07106598984771574, 0.07106598984771574, 0.06091370558375635, 0.05583756345177665, 0.05583756345177665, 0.06091370558375635, 0.06598984771573604, 0.116751269035533, 0.1218274111675127, 0.116751269035533, 0.050761421319796954, 0.050761421319796954, 0.050761421319796954, 0.050761421319796954, 0.050761421319796954, 0.050761421319796954, 0.050761421319796954, 0.04568527918781726, 0.06091370558375635, 0.06091370558375635, 0.06598984771573604, 0.06598984771573604, 0.06598984771573604, 0.06091370558375635, 0.08121827411167512, 0.08629441624365482, 0.09137055837563451, 0.06598984771573604, 0.1319796954314721, 0.16751269035532995, 0.19796954314720813, 0.38578680203045684, 0.233502538071066, 0.17258883248730963, 0.16243654822335024, 0.1218274111675127, 0.09644670050761421, 0.09644670050761421, 0.10152284263959391, 0.949238578680203, 0.06598984771573604, 0.10152284263959391, 0.116751269035533, 0.8274111675126904, 0.06598984771573604, 0.06091370558375635, 0.06091370558375635, 0.06091370558375635, 0.06091370558375635, 0.06091370558375635, 0.06091370558375635, 0.06598984771573604, 0.06091370558375635, 0.06091370558375635, 0.6446700507614214, 0.06091370558375635, 0.06091370558375635, 0.06091370558375635, 0.06091370558375635, 0.06091370558375635, 0.9137055837563451, 0.06091370558375635, 0.06091370558375635, 0.06598984771573604, 0.06091370558375635, 0.06091370558375635, 0.06091370558375635, 0.06091370558375635, 0.06091370558375635, 0.07614213197969544, 0.08121827411167512, 0.08121827411167512, 0.08121827411167512, 0.08121827411167512, 0.08629441624365482, 0.08629441624365482, 0.08629441624365482, 0.09137055837563451, 0.09137055837563451, 0.09137055837563451, 0.12690355329949238, 0.41624365482233505], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PH_5.gap.json b/pfam_gap_rates/PH_5.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..cb845615aa48955e0ecf53cda3753debe1b5e541
--- /dev/null
+++ b/pfam_gap_rates/PH_5.gap.json
@@ -0,0 +1 @@
+{"family": "PH_5", "n_seqs": 318, "length": 190, "gap_rates": [0.22012578616352202, 0.14779874213836477, 0.11635220125786164, 0.11320754716981132, 0.09433962264150944, 0.07861635220125786, 0.06918238993710692, 0.06289308176100629, 0.059748427672955975, 0.05660377358490566, 0.059748427672955975, 0.05660377358490566, 0.0880503144654088, 0.09119496855345911, 0.36477987421383645, 0.34591194968553457, 0.27044025157232704, 0.09748427672955975, 0.7955974842767296, 0.839622641509434, 0.7610062893081762, 0.009433962264150943, 0.009433962264150943, 0.009433962264150943, 0.009433962264150943, 0.009433962264150943, 0.009433962264150943, 0.009433962264150943, 0.009433962264150943, 0.009433962264150943, 0.009433962264150943, 0.009433962264150943, 0.009433962264150943, 0.009433962264150943, 0.009433962264150943, 0.009433962264150943, 0.009433962264150943, 0.949685534591195, 0.9339622641509434, 0.009433962264150943, 0.0660377358490566, 0.0660377358490566, 0.025157232704402517, 0.9276729559748428, 0.9433962264150944, 0.9465408805031447, 0.9339622641509434, 0.9182389937106918, 0.050314465408805034, 0.0440251572327044, 0.02830188679245283, 0.012578616352201259, 0.006289308176100629, 0.006289308176100629, 0.006289308176100629, 0.006289308176100629, 0.006289308176100629, 0.012578616352201259, 0.018867924528301886, 0.018867924528301886, 0.018867924528301886, 0.0220125786163522, 0.0220125786163522, 0.018867924528301886, 0.0220125786163522, 0.0220125786163522, 0.0220125786163522, 0.0220125786163522, 0.949685534591195, 0.050314465408805034, 0.031446540880503145, 0.02830188679245283, 0.02830188679245283, 0.02830188679245283, 0.02830188679245283, 0.02830188679245283, 0.02830188679245283, 0.14150943396226415, 0.1320754716981132, 0.16981132075471697, 0.6823899371069182, 0.7264150943396226, 0.7924528301886793, 0.8144654088050315, 0.8553459119496856, 0.9371069182389937, 0.9182389937106918, 0.8238993710691824, 0.8050314465408805, 0.7641509433962265, 0.7075471698113207, 0.6666666666666666, 0.22327044025157233, 0.449685534591195, 0.42138364779874216, 0.42138364779874216, 0.9339622641509434, 0.1540880503144654, 0.5534591194968553, 0.6257861635220126, 0.6635220125786163, 0.710691823899371, 0.7452830188679245, 0.7484276729559748, 0.7578616352201258, 0.7924528301886793, 0.8050314465408805, 0.8364779874213837, 0.8553459119496856, 0.8930817610062893, 0.9276729559748428, 0.9465408805031447, 0.9465408805031447, 0.940251572327044, 0.9119496855345912, 0.8773584905660378, 0.8459119496855346, 0.8207547169811321, 0.7987421383647799, 0.7672955974842768, 0.7547169811320755, 0.7484276729559748, 0.7232704402515723, 0.6981132075471698, 0.6477987421383647, 0.5691823899371069, 0.5314465408805031, 0.11320754716981132, 0.13836477987421383, 0.11320754716981132, 0.1069182389937107, 0.09119496855345911, 0.1069182389937107, 0.09119496855345911, 0.09119496855345911, 0.09748427672955975, 0.10062893081761007, 0.10377358490566038, 0.11006289308176101, 0.13522012578616352, 0.889937106918239, 0.31761006289308175, 0.4119496855345912, 0.3742138364779874, 0.33962264150943394, 0.3270440251572327, 0.2861635220125786, 0.22012578616352202, 0.09748427672955975, 0.08176100628930817, 0.07861635220125786, 0.06918238993710692, 0.06918238993710692, 0.06918238993710692, 0.06918238993710692, 0.06918238993710692, 0.06918238993710692, 0.06918238993710692, 0.07232704402515723, 0.07232704402515723, 0.07232704402515723, 0.06918238993710692, 0.06918238993710692, 0.07547169811320754, 0.07861635220125786, 0.07861635220125786, 0.22327044025157233, 0.8553459119496856, 0.1949685534591195, 0.08490566037735849, 0.07861635220125786, 0.07547169811320754, 0.07547169811320754, 0.08176100628930817, 0.07547169811320754, 0.07861635220125786, 0.07547169811320754, 0.07547169811320754, 0.07547169811320754, 0.08490566037735849, 0.07547169811320754, 0.07547169811320754, 0.07547169811320754, 0.07861635220125786, 0.08490566037735849, 0.09748427672955975, 0.14465408805031446, 0.22327044025157233, 0.449685534591195, 0.5440251572327044], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PH_8.gap.json b/pfam_gap_rates/PH_8.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a8a4b05e585b7073144a066bf56117977ac587c0
--- /dev/null
+++ b/pfam_gap_rates/PH_8.gap.json
@@ -0,0 +1 @@
+{"family": "PH_8", "n_seqs": 210, "length": 94, "gap_rates": [0.16666666666666666, 0.1380952380952381, 0.13333333333333333, 0.13333333333333333, 0.13333333333333333, 0.12857142857142856, 0.12857142857142856, 0.11428571428571428, 0.08095238095238096, 0.06190476190476191, 0.047619047619047616, 0.0380952380952381, 0.02857142857142857, 0.0380952380952381, 0.02857142857142857, 0.02857142857142857, 0.009523809523809525, 0.004761904761904762, 0.004761904761904762, 0.004761904761904762, 0.004761904761904762, 0.5095238095238095, 0.37142857142857144, 0.009523809523809525, 0.009523809523809525, 0.004761904761904762, 0.004761904761904762, 0.004761904761904762, 0.004761904761904762, 0.004761904761904762, 0.004761904761904762, 0.004761904761904762, 0.9285714285714286, 0.9285714285714286, 0.9285714285714286, 0.09047619047619047, 0.04285714285714286, 0.05714285714285714, 0.02857142857142857, 0.0380952380952381, 0.6904761904761905, 0.780952380952381, 0.680952380952381, 0.014285714285714285, 0.009523809523809525, 0.014285714285714285, 0.004761904761904762, 0.004761904761904762, 0.004761904761904762, 0.004761904761904762, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.004761904761904762, 0.004761904761904762, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.004761904761904762, 0.0, 0.0, 0.0, 0.0, 0.009523809523809525, 0.009523809523809525, 0.014285714285714285, 0.009523809523809525, 0.009523809523809525, 0.009523809523809525, 0.009523809523809525, 0.009523809523809525, 0.009523809523809525, 0.009523809523809525, 0.009523809523809525, 0.014285714285714285, 0.014285714285714285, 0.01904761904761905, 0.06666666666666667, 0.2523809523809524, 0.5857142857142857], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PI3K_P85_iSH2.gap.json b/pfam_gap_rates/PI3K_P85_iSH2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d3be0606a5188d27bcd171eab3207c6dae70f12a
--- /dev/null
+++ b/pfam_gap_rates/PI3K_P85_iSH2.gap.json
@@ -0,0 +1 @@
+{"family": "PI3K_P85_iSH2", "n_seqs": 114, "length": 169, "gap_rates": [0.4473684210526316, 0.32456140350877194, 0.30701754385964913, 0.30701754385964913, 0.30701754385964913, 0.2894736842105263, 0.2543859649122807, 0.22807017543859648, 0.21929824561403508, 0.20175438596491227, 0.14912280701754385, 0.14912280701754385, 0.11403508771929824, 0.11403508771929824, 0.11403508771929824, 0.11403508771929824, 0.11403508771929824, 0.11403508771929824, 0.11403508771929824, 0.11403508771929824, 0.11403508771929824, 0.11403508771929824, 0.11403508771929824, 0.11403508771929824, 0.11403508771929824, 0.11403508771929824, 0.10526315789473684, 0.09649122807017543, 0.09649122807017543, 0.09649122807017543, 0.09649122807017543, 0.09649122807017543, 0.09649122807017543, 0.09649122807017543, 0.09649122807017543, 0.09649122807017543, 0.10526315789473684, 0.10526315789473684, 0.10526315789473684, 0.10526315789473684, 0.09649122807017543, 0.09649122807017543, 0.09649122807017543, 0.09649122807017543, 0.09649122807017543, 0.08771929824561403, 0.08771929824561403, 0.08771929824561403, 0.07894736842105263, 0.07017543859649122, 0.07017543859649122, 0.043859649122807015, 0.043859649122807015, 0.043859649122807015, 0.043859649122807015, 0.043859649122807015, 0.043859649122807015, 0.043859649122807015, 0.043859649122807015, 0.043859649122807015, 0.043859649122807015, 0.043859649122807015, 0.043859649122807015, 0.043859649122807015, 0.043859649122807015, 0.043859649122807015, 0.043859649122807015, 0.043859649122807015, 0.043859649122807015, 0.043859649122807015, 0.043859649122807015, 0.043859649122807015, 0.043859649122807015, 0.043859649122807015, 0.043859649122807015, 0.043859649122807015, 0.043859649122807015, 0.05263157894736842, 0.4649122807017544, 0.49122807017543857, 0.49122807017543857, 0.5, 0.5, 0.49122807017543857, 0.47368421052631576, 0.42105263157894735, 0.043859649122807015, 0.05263157894736842, 0.05263157894736842, 0.043859649122807015, 0.043859649122807015, 0.05263157894736842, 0.06140350877192982, 0.07017543859649122, 0.07017543859649122, 0.07017543859649122, 0.07017543859649122, 0.06140350877192982, 0.05263157894736842, 0.05263157894736842, 0.05263157894736842, 0.05263157894736842, 0.05263157894736842, 0.05263157894736842, 0.06140350877192982, 0.06140350877192982, 0.06140350877192982, 0.06140350877192982, 0.06140350877192982, 0.06140350877192982, 0.06140350877192982, 0.06140350877192982, 0.06140350877192982, 0.06140350877192982, 0.05263157894736842, 0.05263157894736842, 0.05263157894736842, 0.05263157894736842, 0.05263157894736842, 0.05263157894736842, 0.05263157894736842, 0.05263157894736842, 0.05263157894736842, 0.05263157894736842, 0.05263157894736842, 0.05263157894736842, 0.05263157894736842, 0.05263157894736842, 0.06140350877192982, 0.06140350877192982, 0.06140350877192982, 0.06140350877192982, 0.06140350877192982, 0.06140350877192982, 0.06140350877192982, 0.06140350877192982, 0.06140350877192982, 0.07894736842105263, 0.06140350877192982, 0.06140350877192982, 0.06140350877192982, 0.06140350877192982, 0.06140350877192982, 0.06140350877192982, 0.06140350877192982, 0.08771929824561403, 0.08771929824561403, 0.08771929824561403, 0.09649122807017543, 0.11403508771929824, 0.11403508771929824, 0.14035087719298245, 0.14035087719298245, 0.14035087719298245, 0.14912280701754385, 0.14912280701754385, 0.14912280701754385, 0.14912280701754385, 0.15789473684210525, 0.17543859649122806, 0.20175438596491227, 0.20175438596491227, 0.20175438596491227, 0.23684210526315788, 0.23684210526315788, 0.23684210526315788, 0.24561403508771928, 0.2719298245614035, 0.8859649122807017], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PI3Ka.gap.json b/pfam_gap_rates/PI3Ka.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..037f60e3f425f847ac5fb09518ec8726b1e4f1f5
--- /dev/null
+++ b/pfam_gap_rates/PI3Ka.gap.json
@@ -0,0 +1 @@
+{"family": "PI3Ka", "n_seqs": 1061, "length": 252, "gap_rates": [0.9302544769085768, 0.7587181903864278, 0.7153628652214892, 0.6880301602262017, 0.65315739868049, 0.5758718190386428, 0.5362865221489161, 0.5089538171536286, 0.47973609802073514, 0.4590009425070688, 0.44957587181903863, 0.4354382657869934, 0.42601319509896324, 0.42601319509896324, 0.4222431668237512, 0.41658812441093307, 0.40904806786050896, 0.40245051837888784, 0.40245051837888784, 0.3986804901036758, 0.3892554194156456, 0.37794533459000945, 0.37229029217719134, 0.3685202639019793, 0.3581526861451461, 0.354382657869934, 0.34872761545711595, 0.34401508011310084, 0.3383600377002828, 0.3355325164938737, 0.3308199811498586, 0.32704995287464655, 0.3242224316682375, 0.3223374175306315, 0.3232799245994345, 0.32139491046182844, 0.32139491046182844, 0.9264844486333648, 0.31856738925541944, 0.31291234684260133, 0.30348727615457116, 0.2997172478793591, 0.2865221489161169, 0.2761545711592837, 0.27426955702167766, 0.26861451460885954, 0.26013195098963243, 0.24976437323279924, 0.2639019792648445, 0.22525918944392084, 0.2233741753063148, 0.22525918944392084, 0.235626767200754, 0.9217719132893497, 0.2648444863336475, 0.24599434495758718, 0.22620169651272384, 0.20169651272384542, 0.19321394910461828, 0.1885014137606032, 0.18001885014137606, 0.16305372290292178, 0.16682375117813383, 0.1347785108388313, 0.12441093308199812, 0.11498586239396795, 0.11027332704995288, 0.10367577756833177, 0.09707822808671066, 0.09236569274269557, 0.08765315739868049, 0.09048067860508954, 0.09048067860508954, 0.08765315739868049, 0.08388312912346843, 0.08105560791705937, 0.9236569274269557, 0.08105560791705937, 0.08011310084825636, 0.0763430725730443, 0.07445805843543826, 0.07351555136663525, 0.07257304429783223, 0.07163053722902922, 0.0706880301602262, 0.0706880301602262, 0.0706880301602262, 0.06880301602262016, 0.07540056550424128, 0.08011310084825636, 0.07822808671065033, 0.07257304429783223, 0.05937794533459001, 0.7097078228086711, 0.05372290292177191, 0.0527803958529689, 0.0527803958529689, 0.051837888784165884, 0.04995287464655985, 0.04995287464655985, 0.049010367577756835, 0.049010367577756835, 0.049010367577756835, 0.04806786050895382, 0.04806786050895382, 0.0471253534401508, 0.0471253534401508, 0.9283694627709708, 0.0471253534401508, 0.04429783223374175, 0.046182846371347785, 0.0471253534401508, 0.05372290292177191, 0.05372290292177191, 0.05466540999057493, 0.05560791705937795, 0.05560791705937795, 0.05466540999057493, 0.05560791705937795, 0.05560791705937795, 0.05466540999057493, 0.05466540999057493, 0.05466540999057493, 0.05655042412818096, 0.058435438265786996, 0.05655042412818096, 0.05466540999057493, 0.05372290292177191, 0.7869934024505184, 0.7973609802073516, 0.8049010367577757, 0.827521206409048, 0.8727615457115928, 0.8746465598491989, 0.8765315739868049, 0.8765315739868049, 0.8944392082940622, 0.8982092365692743, 0.9000942507068803, 0.9010367577756834, 0.9019792648444863, 0.9066918001885014, 0.9104618284637135, 0.9114043355325165, 0.9114043355325165, 0.9142318567389256, 0.9142318567389256, 0.9170593779453345, 0.9180018850141376, 0.9217719132893497, 0.9245994344957588, 0.9311969839773798, 0.9349670122525919, 0.939679547596607, 0.943449575871819, 0.9491046182846371, 0.9472196041470311, 0.941564561734213, 0.937794533459001, 0.9330819981149858, 0.9274269557021678, 0.9227144203581527, 0.9198868991517436, 0.9170593779453345, 0.9151743638077285, 0.9142318567389256, 0.9123468426013195, 0.9114043355325165, 0.9104618284637135, 0.9085768143261075, 0.9048067860508954, 0.9019792648444863, 0.9010367577756834, 0.8982092365692743, 0.8963242224316682, 0.8934967012252591, 0.8765315739868049, 0.8765315739868049, 0.8737040527803959, 0.8312912346842601, 0.8124410933081998, 0.8011310084825636, 0.7879359095193214, 0.7822808671065034, 0.3393025447690858, 0.3232799245994345, 0.06974552309142319, 0.06220546654099906, 0.06503298774740811, 0.0640904806786051, 0.06597549481621112, 0.06597549481621112, 0.06597549481621112, 0.06503298774740811, 0.06503298774740811, 0.0640904806786051, 0.06503298774740811, 0.06597549481621112, 0.06597549481621112, 0.06597549481621112, 0.06503298774740811, 0.06597549481621112, 0.06597549481621112, 0.8868991517436381, 0.06691800188501414, 0.06691800188501414, 0.06691800188501414, 0.06786050895381715, 0.06880301602262016, 0.06974552309142319, 0.06974552309142319, 0.0706880301602262, 0.0706880301602262, 0.07257304429783223, 0.07351555136663525, 0.07822808671065033, 0.07822808671065033, 0.08011310084825636, 0.6738925541941565, 0.8077285579641847, 0.8803016022620169, 0.8887841658812441, 0.8671065032987747, 0.7163053722902922, 0.6295947219604147, 0.09896324222431668, 0.1423185673892554, 0.14891611687087652, 0.16399622997172478, 0.177191328934967, 0.18661639962299717, 0.19792648444863337, 0.21394910461828465, 0.22620169651272384, 0.23468426013195098, 0.24505183788878418, 0.2525918944392083, 0.2582469368520264, 0.26578699340245054, 0.2780395852968897, 0.28934967012252594, 0.30348727615457116, 0.3242224316682375, 0.3459000942507069, 0.37983034872761545, 0.4467483506126296, 0.5070688030160226, 0.5664467483506126, 0.6352497643732328, 0.6823751178133836, 0.7558906691800189, 0.879359095193214], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PMM.gap.json b/pfam_gap_rates/PMM.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..19bee05bf9b6255ebc977d50a8470da27619c615
--- /dev/null
+++ b/pfam_gap_rates/PMM.gap.json
@@ -0,0 +1 @@
+{"family": "PMM", "n_seqs": 507, "length": 233, "gap_rates": [0.6410256410256411, 0.4240631163708087, 0.27613412228796846, 0.22879684418145957, 0.20710059171597633, 0.20315581854043394, 0.1992110453648915, 0.1913214990138067, 0.1913214990138067, 0.1854043392504931, 0.1834319526627219, 0.1834319526627219, 0.1834319526627219, 0.1834319526627219, 0.1834319526627219, 0.1814595660749507, 0.17751479289940827, 0.17751479289940827, 0.1755424063116371, 0.1755424063116371, 0.1755424063116371, 0.1755424063116371, 0.1755424063116371, 0.17751479289940827, 0.1755424063116371, 0.16962524654832348, 0.16765285996055226, 0.16568047337278108, 0.16568047337278108, 0.45759368836291914, 0.6824457593688363, 0.9408284023668639, 0.873767258382643, 0.6410256410256411, 0.2504930966469428, 0.1893491124260355, 0.17159763313609466, 0.15779092702169625, 0.15187376725838264, 0.15384615384615385, 0.15187376725838264, 0.15187376725838264, 0.15976331360946747, 0.9487179487179487, 0.9467455621301775, 0.15384615384615385, 0.14595660749506903, 0.14595660749506903, 0.14595660749506903, 0.14595660749506903, 0.14398422090729784, 0.14398422090729784, 0.14398422090729784, 0.14201183431952663, 0.14201183431952663, 0.14201183431952663, 0.14398422090729784, 0.14398422090729784, 0.14398422090729784, 0.14595660749506903, 0.14595660749506903, 0.14595660749506903, 0.14595660749506903, 0.14990138067061143, 0.15187376725838264, 0.15384615384615385, 0.15187376725838264, 0.15187376725838264, 0.15187376725838264, 0.15384615384615385, 0.15187376725838264, 0.15187376725838264, 0.14990138067061143, 0.15187376725838264, 0.15384615384615385, 0.15384615384615385, 0.15187376725838264, 0.16173570019723865, 0.16370808678500987, 0.16173570019723865, 0.16173570019723865, 0.16370808678500987, 0.16568047337278108, 0.16765285996055226, 0.16765285996055226, 0.17159763313609466, 0.16765285996055226, 0.16568047337278108, 0.16370808678500987, 0.16370808678500987, 0.16765285996055226, 0.16765285996055226, 0.16370808678500987, 0.16370808678500987, 0.15581854043392504, 0.14990138067061143, 0.126232741617357, 0.1222879684418146, 0.11834319526627218, 0.11439842209072978, 0.11439842209072978, 0.11637080867850098, 0.11637080867850098, 0.11045364891518737, 0.10453648915187377, 0.09861932938856016, 0.09861932938856016, 0.09861932938856016, 0.09861932938856016, 0.09861932938856016, 0.09861932938856016, 0.09861932938856016, 0.10256410256410256, 0.10256410256410256, 0.10059171597633136, 0.10059171597633136, 0.10059171597633136, 0.10256410256410256, 0.10059171597633136, 0.09861932938856016, 0.09664694280078895, 0.10256410256410256, 0.13214990138067062, 0.16765285996055226, 0.1913214990138067, 0.16765285996055226, 0.1282051282051282, 0.09861932938856016, 0.09072978303747535, 0.09664694280078895, 0.10059171597633136, 0.10453648915187377, 0.10848126232741617, 0.10650887573964497, 0.10256410256410256, 0.10848126232741617, 0.10650887573964497, 0.10256410256410256, 0.10650887573964497, 0.11045364891518737, 0.10848126232741617, 0.1301775147928994, 0.13806706114398423, 0.1341222879684418, 0.13609467455621302, 0.1301775147928994, 0.17357001972386588, 0.1913214990138067, 0.14201183431952663, 0.1222879684418146, 0.14003944773175542, 0.1341222879684418, 0.11637080867850098, 0.10453648915187377, 0.10059171597633136, 0.10059171597633136, 0.10059171597633136, 0.10256410256410256, 0.10256410256410256, 0.10059171597633136, 0.10059171597633136, 0.09664694280078895, 0.09861932938856016, 0.10059171597633136, 0.10059171597633136, 0.09861932938856016, 0.10453648915187377, 0.10453648915187377, 0.10256410256410256, 0.10256410256410256, 0.10059171597633136, 0.10059171597633136, 0.10059171597633136, 0.10059171597633136, 0.10059171597633136, 0.10059171597633136, 0.09861932938856016, 0.10256410256410256, 0.3057199211045365, 0.33925049309664695, 0.7297830374753451, 0.9151873767258383, 0.9191321499013807, 0.9467455621301775, 0.9151873767258383, 0.7534516765285996, 0.7140039447731755, 0.11045364891518737, 0.10256410256410256, 0.10453648915187377, 0.10256410256410256, 0.10256410256410256, 0.10256410256410256, 0.10256410256410256, 0.10453648915187377, 0.10453648915187377, 0.10453648915187377, 0.10256410256410256, 0.10256410256410256, 0.10059171597633136, 0.11242603550295859, 0.11242603550295859, 0.11242603550295859, 0.11637080867850098, 0.1222879684418146, 0.1242603550295858, 0.14398422090729784, 0.17357001972386588, 0.1794871794871795, 0.20907297830374755, 0.1992110453648915, 0.1932938856015779, 0.1755424063116371, 0.1755424063116371, 0.17751479289940827, 0.1814595660749507, 0.1755424063116371, 0.17751479289940827, 0.17751479289940827, 0.1814595660749507, 0.1814595660749507, 0.1814595660749507, 0.1814595660749507, 0.1834319526627219, 0.1854043392504931, 0.1893491124260355, 0.1913214990138067, 0.1913214990138067, 0.20512820512820512, 0.22090729783037474, 0.24260355029585798, 0.27218934911242604, 0.5798816568047337], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PNGaseA.gap.json b/pfam_gap_rates/PNGaseA.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..4508f5c08eee7ed4f4e2b85907a2deda78a6e57a
--- /dev/null
+++ b/pfam_gap_rates/PNGaseA.gap.json
@@ -0,0 +1 @@
+{"family": "PNGaseA", "n_seqs": 300, "length": 495, "gap_rates": [0.88, 0.8466666666666667, 0.7833333333333333, 0.7333333333333333, 0.69, 0.7133333333333334, 0.64, 0.5866666666666667, 0.5133333333333333, 0.51, 0.9433333333333334, 0.9066666666666666, 0.33, 0.30666666666666664, 0.3, 0.2866666666666667, 0.2866666666666667, 0.2833333333333333, 0.2733333333333333, 0.26666666666666666, 0.26, 0.26, 0.26, 0.2733333333333333, 0.26666666666666666, 0.27, 0.27, 0.27, 0.25333333333333335, 0.7833333333333333, 0.24666666666666667, 0.25, 0.25666666666666665, 0.24, 0.8966666666666666, 0.22333333333333333, 0.21333333333333335, 0.21, 0.21333333333333335, 0.21, 0.94, 0.5166666666666667, 0.21666666666666667, 0.21, 0.5066666666666667, 0.7766666666666666, 0.9366666666666666, 0.9433333333333334, 0.9466666666666667, 0.9366666666666666, 0.92, 0.6733333333333333, 0.49666666666666665, 0.21, 0.21, 0.21, 0.20666666666666667, 0.2, 0.2, 0.2, 0.2, 0.2, 0.2, 0.2, 0.2, 0.19666666666666666, 0.2, 0.2, 0.2, 0.2, 0.19666666666666666, 0.19666666666666666, 0.2, 0.2, 0.20333333333333334, 0.19666666666666666, 0.19666666666666666, 0.2, 0.19333333333333333, 0.19333333333333333, 0.19333333333333333, 0.19666666666666666, 0.19666666666666666, 0.19333333333333333, 0.2, 0.20666666666666667, 0.20666666666666667, 0.20333333333333334, 0.20333333333333334, 0.19333333333333333, 0.19333333333333333, 0.19666666666666666, 0.2, 0.2, 0.21, 0.8066666666666666, 0.20666666666666667, 0.2, 0.2, 0.18666666666666668, 0.18666666666666668, 0.19666666666666666, 0.19, 0.18666666666666668, 0.18333333333333332, 0.18, 0.18, 0.18, 0.18, 0.18, 0.17333333333333334, 0.16666666666666666, 0.16666666666666666, 0.17, 0.9, 0.7666666666666667, 0.17, 0.17333333333333334, 0.16666666666666666, 0.16666666666666666, 0.16666666666666666, 0.16, 0.15666666666666668, 0.16333333333333333, 0.16666666666666666, 0.16333333333333333, 0.15333333333333332, 0.15, 0.15666666666666668, 0.15333333333333332, 0.15, 0.16666666666666666, 0.9333333333333333, 0.93, 0.15333333333333332, 0.15, 0.15, 0.15, 0.15333333333333332, 0.15, 0.15, 0.14666666666666667, 0.15, 0.15, 0.14666666666666667, 0.14333333333333334, 0.15, 0.15, 0.15, 0.15, 0.15, 0.6, 0.6833333333333333, 0.75, 0.7733333333333333, 0.78, 0.7966666666666666, 0.83, 0.8533333333333334, 0.8766666666666667, 0.8966666666666666, 0.9066666666666666, 0.9133333333333333, 0.9466666666666667, 0.95, 0.95, 0.9333333333333333, 0.9066666666666666, 0.8966666666666666, 0.8833333333333333, 0.8766666666666667, 0.85, 0.8066666666666666, 0.7833333333333333, 0.7766666666666666, 0.76, 0.7333333333333333, 0.63, 0.5866666666666667, 0.2966666666666667, 0.28, 0.26, 0.16333333333333333, 0.14333333333333334, 0.13666666666666666, 0.13333333333333333, 0.13333333333333333, 0.13333333333333333, 0.13333333333333333, 0.13333333333333333, 0.13333333333333333, 0.13333333333333333, 0.13333333333333333, 0.13333333333333333, 0.13333333333333333, 0.34, 0.5666666666666667, 0.49, 0.2966666666666667, 0.22333333333333333, 0.20333333333333334, 0.17333333333333334, 0.17, 0.17, 0.16666666666666666, 0.17, 0.16666666666666666, 0.16666666666666666, 0.16666666666666666, 0.16, 0.16, 0.15666666666666668, 0.5466666666666666, 0.16666666666666666, 0.15666666666666668, 0.15333333333333332, 0.15333333333333332, 0.15666666666666668, 0.23, 0.23, 0.5833333333333334, 0.14666666666666667, 0.14333333333333334, 0.14, 0.13666666666666666, 0.13333333333333333, 0.13333333333333333, 0.13333333333333333, 0.13, 0.13, 0.13, 0.13, 0.13, 0.13, 0.12666666666666668, 0.12666666666666668, 0.12666666666666668, 0.13, 0.13, 0.13, 0.12666666666666668, 0.12666666666666668, 0.13666666666666666, 0.14, 0.13333333333333333, 0.13, 0.13666666666666666, 0.14333333333333334, 0.15333333333333332, 0.16, 0.18333333333333332, 0.24333333333333335, 0.25666666666666665, 0.26, 0.26, 0.25333333333333335, 0.25, 0.72, 0.6633333333333333, 0.32, 0.2966666666666667, 0.29333333333333333, 0.27, 0.23666666666666666, 0.20666666666666667, 0.15, 0.14666666666666667, 0.13666666666666666, 0.12666666666666668, 0.12, 0.12, 0.12, 0.12, 0.12, 0.12, 0.12, 0.12333333333333334, 0.12333333333333334, 0.12333333333333334, 0.12333333333333334, 0.12333333333333334, 0.12333333333333334, 0.12333333333333334, 0.12333333333333334, 0.12333333333333334, 0.12333333333333334, 0.12333333333333334, 0.12333333333333334, 0.12333333333333334, 0.12666666666666668, 0.13, 0.12666666666666668, 0.12666666666666668, 0.12666666666666668, 0.13333333333333333, 0.13333333333333333, 0.13333333333333333, 0.13333333333333333, 0.13333333333333333, 0.13333333333333333, 0.13, 0.12333333333333334, 0.12333333333333334, 0.12, 0.12, 0.12, 0.12, 0.12, 0.12333333333333334, 0.12333333333333334, 0.12333333333333334, 0.12333333333333334, 0.12333333333333334, 0.12, 0.12, 0.12, 0.12, 0.12, 0.12, 0.12, 0.12, 0.12, 0.12, 0.12666666666666668, 0.13333333333333333, 0.14333333333333334, 0.13, 0.13, 0.14666666666666667, 0.13333333333333333, 0.12333333333333334, 0.12, 0.12, 0.12, 0.12, 0.12666666666666668, 0.12666666666666668, 0.12666666666666668, 0.13, 0.13666666666666666, 0.13333333333333333, 0.14, 0.83, 0.8, 0.7933333333333333, 0.78, 0.7733333333333333, 0.7433333333333333, 0.7333333333333333, 0.73, 0.57, 0.5466666666666666, 0.54, 0.5233333333333333, 0.5233333333333333, 0.51, 0.14666666666666667, 0.14333333333333334, 0.14, 0.14333333333333334, 0.14333333333333334, 0.14333333333333334, 0.14333333333333334, 0.14333333333333334, 0.14333333333333334, 0.14333333333333334, 0.14666666666666667, 0.14666666666666667, 0.14666666666666667, 0.15, 0.15, 0.15, 0.3333333333333333, 0.32, 0.30333333333333334, 0.29333333333333333, 0.2866666666666667, 0.24333333333333335, 0.16333333333333333, 0.17, 0.18333333333333332, 0.18333333333333332, 0.18666666666666668, 0.18666666666666668, 0.18666666666666668, 0.3933333333333333, 0.37666666666666665, 0.3933333333333333, 0.3933333333333333, 0.37666666666666665, 0.36333333333333334, 0.3566666666666667, 0.36, 0.9366666666666666, 0.9166666666666666, 0.49333333333333335, 0.49333333333333335, 0.42, 0.42333333333333334, 0.4066666666666667, 0.4066666666666667, 0.41, 0.39666666666666667, 0.3933333333333333, 0.39666666666666667, 0.39, 0.67, 0.3933333333333333, 0.35, 0.2733333333333333, 0.25666666666666665, 0.23333333333333334, 0.24, 0.4766666666666667, 0.47, 0.24666666666666667, 0.23333333333333334, 0.23333333333333334, 0.22, 0.22666666666666666, 0.22333333333333333, 0.22333333333333333, 0.23, 0.22666666666666666, 0.23333333333333334, 0.23, 0.24333333333333335, 0.3233333333333333, 0.31333333333333335, 0.29, 0.3933333333333333, 0.4166666666666667, 0.42333333333333334, 0.44333333333333336, 0.83, 0.44, 0.42333333333333334, 0.41, 0.3933333333333333, 0.25, 0.24666666666666667, 0.24666666666666667, 0.24333333333333335, 0.24333333333333335, 0.24666666666666667, 0.24666666666666667, 0.25, 0.25, 0.25, 0.25, 0.25333333333333335, 0.25333333333333335, 0.25333333333333335, 0.25333333333333335, 0.25666666666666665, 0.25666666666666665, 0.25666666666666665, 0.2633333333333333, 0.27666666666666667, 0.25666666666666665, 0.26, 0.26666666666666666, 0.2633333333333333, 0.26, 0.27, 0.2733333333333333, 0.2733333333333333, 0.2833333333333333, 0.2833333333333333, 0.2833333333333333, 0.2866666666666667, 0.29333333333333333, 0.30333333333333334, 0.31333333333333335, 0.33, 0.3466666666666667, 0.3466666666666667, 0.38, 0.9466666666666667, 0.49, 0.5066666666666667, 0.49333333333333335, 0.49, 0.48333333333333334, 0.47, 0.48333333333333334, 0.6166666666666667, 0.5966666666666667, 0.5433333333333333, 0.53, 0.45, 0.4533333333333333, 0.4533333333333333, 0.4633333333333333, 0.5566666666666666], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PNK3P.gap.json b/pfam_gap_rates/PNK3P.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..5fca13ebafe9248c60274ec1d16f3f06976cc171
--- /dev/null
+++ b/pfam_gap_rates/PNK3P.gap.json
@@ -0,0 +1 @@
+{"family": "PNK3P", "n_seqs": 524, "length": 206, "gap_rates": [0.41030534351145037, 0.25, 0.23091603053435114, 0.21755725190839695, 0.1851145038167939, 0.16603053435114504, 0.16603053435114504, 0.15076335877862596, 0.14694656488549618, 0.14885496183206107, 0.15267175572519084, 0.1431297709923664, 0.13931297709923665, 0.13931297709923665, 0.13358778625954199, 0.13931297709923665, 0.16793893129770993, 0.15839694656488548, 0.14122137404580154, 0.2385496183206107, 0.22519083969465647, 0.21374045801526717, 0.20801526717557253, 0.11450381679389313, 0.09732824427480916, 0.0916030534351145, 0.08396946564885496, 0.08206106870229007, 0.07824427480916031, 0.07633587786259542, 0.09541984732824428, 0.16221374045801526, 0.1297709923664122, 0.9446564885496184, 0.06679389312977099, 0.06297709923664122, 0.0648854961832061, 0.061068702290076333, 0.05916030534351145, 0.05916030534351145, 0.05916030534351145, 0.05725190839694656, 0.8740458015267175, 0.061068702290076333, 0.05725190839694656, 0.0648854961832061, 0.05916030534351145, 0.05916030534351145, 0.05916030534351145, 0.061068702290076333, 0.06297709923664122, 0.061068702290076333, 0.061068702290076333, 0.061068702290076333, 0.061068702290076333, 0.061068702290076333, 0.061068702290076333, 0.06297709923664122, 0.06297709923664122, 0.0648854961832061, 0.09351145038167939, 0.4637404580152672, 0.7633587786259542, 0.8664122137404581, 0.8835877862595419, 0.9312977099236641, 0.9427480916030534, 0.898854961832061, 0.8797709923664122, 0.851145038167939, 0.5324427480916031, 0.4637404580152672, 0.16793893129770993, 0.12022900763358779, 0.08015267175572519, 0.06870229007633588, 0.06297709923664122, 0.06297709923664122, 0.061068702290076333, 0.05916030534351145, 0.05916030534351145, 0.061068702290076333, 0.05916030534351145, 0.061068702290076333, 0.0648854961832061, 0.06870229007633588, 0.0648854961832061, 0.0648854961832061, 0.06679389312977099, 0.06870229007633588, 0.07061068702290077, 0.9255725190839694, 0.8797709923664122, 0.07251908396946564, 0.07251908396946564, 0.06679389312977099, 0.8473282442748091, 0.8931297709923665, 0.9236641221374046, 0.8664122137404581, 0.7977099236641222, 0.06297709923664122, 0.07442748091603053, 0.07061068702290077, 0.06297709923664122, 0.05916030534351145, 0.061068702290076333, 0.061068702290076333, 0.06297709923664122, 0.06297709923664122, 0.799618320610687, 0.8263358778625954, 0.8435114503816794, 0.8625954198473282, 0.9083969465648855, 0.9465648854961832, 0.9198473282442748, 0.8969465648854962, 0.8606870229007634, 0.8377862595419847, 0.8148854961832062, 0.7843511450381679, 0.061068702290076333, 0.8187022900763359, 0.933206106870229, 0.8835877862595419, 0.7919847328244275, 0.061068702290076333, 0.0648854961832061, 0.0648854961832061, 0.0648854961832061, 0.0648854961832061, 0.06679389312977099, 0.06297709923664122, 0.06297709923664122, 0.06297709923664122, 0.06297709923664122, 0.06679389312977099, 0.07061068702290077, 0.07633587786259542, 0.08396946564885496, 0.08587786259541985, 0.10305343511450382, 0.1297709923664122, 0.16221374045801526, 0.22709923664122136, 0.898854961832061, 0.9484732824427481, 0.7538167938931297, 0.4580152671755725, 0.40076335877862596, 0.3282442748091603, 0.23282442748091603, 0.15267175572519084, 0.1450381679389313, 0.1450381679389313, 0.1431297709923664, 0.13549618320610687, 0.13549618320610687, 0.13931297709923665, 0.1431297709923664, 0.1450381679389313, 0.15076335877862596, 0.2480916030534351, 0.3244274809160305, 0.34541984732824427, 0.3530534351145038, 0.6087786259541985, 0.7118320610687023, 0.8759541984732825, 0.9312977099236641, 0.9427480916030534, 0.9408396946564885, 0.9064885496183206, 0.7576335877862596, 0.6412213740458015, 0.5992366412213741, 0.5916030534351145, 0.5820610687022901, 0.5801526717557252, 0.38549618320610685, 0.38549618320610685, 0.38549618320610685, 0.38740458015267176, 0.38740458015267176, 0.37786259541984735, 0.37786259541984735, 0.37786259541984735, 0.37786259541984735, 0.383587786259542, 0.38740458015267176, 0.38740458015267176, 0.39122137404580154, 0.3969465648854962, 0.3969465648854962, 0.40076335877862596, 0.4026717557251908, 0.40458015267175573, 0.4083969465648855, 0.41030534351145037, 0.4179389312977099, 0.4217557251908397, 0.4217557251908397, 0.42366412213740456, 0.4255725190839695, 0.44083969465648853], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PNPase.gap.json b/pfam_gap_rates/PNPase.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e8d992109477efa5ae57cd7af951f153d8b63523
--- /dev/null
+++ b/pfam_gap_rates/PNPase.gap.json
@@ -0,0 +1 @@
+{"family": "PNPase", "n_seqs": 2001, "length": 91, "gap_rates": [0.7976011994002998, 0.30334832583708143, 0.22138930534732634, 0.12993503248375812, 0.10344827586206896, 0.08495752123938032, 0.0769615192403798, 0.07146426786606697, 0.06796601699150424, 0.06096951524237881, 0.047976011994003, 0.03548225887056472, 0.030984507746126936, 0.02948525737131434, 0.02798600699650175, 0.02498750624687656, 0.022988505747126436, 0.022488755622188907, 0.02048975512243878, 0.017491254372813594, 0.8835582208895553, 0.8225887056471765, 0.014992503748125937, 0.013993003498250875, 0.013493253373313344, 0.012993503248375811, 0.010494752623688156, 0.011494252873563218, 0.009995002498750625, 0.009495252373813094, 0.00849575212393803, 0.00849575212393803, 0.0079960019990005, 0.0074962518740629685, 0.0069965017491254375, 0.0069965017491254375, 0.0069965017491254375, 0.006496751624187906, 0.005497251374312844, 0.004497751124437781, 0.004497751124437781, 0.004497751124437781, 0.004997501249375313, 0.004497751124437781, 0.4587706146926537, 0.44177911044477763, 0.39730134932533734, 0.3708145927036482, 0.33033483258370816, 0.36231884057971014, 0.2638680659670165, 0.8615692153923038, 0.9255372313843079, 0.9495252373813093, 0.9435282358820589, 0.9145427286356822, 0.8340829585207397, 0.008995502248875561, 0.00399800099950025, 0.0014992503748125937, 0.0004997501249375312, 0.0, 0.0004997501249375312, 0.0, 0.0024987506246876563, 0.0009995002498750624, 0.0014992503748125937, 0.0004997501249375312, 0.0004997501249375312, 0.0004997501249375312, 0.0004997501249375312, 0.0009995002498750624, 0.0004997501249375312, 0.0004997501249375312, 0.0004997501249375312, 0.0004997501249375312, 0.0004997501249375312, 0.0009995002498750624, 0.0009995002498750624, 0.004997501249375313, 0.0004997501249375312, 0.0004997501249375312, 0.005497251374312844, 0.008995502248875561, 0.0069965017491254375, 0.001999000499750125, 0.0024987506246876563, 0.0029985007496251873, 0.0034982508745627187, 0.0034982508745627187, 0.3523238380809595], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PPO1_DWL.gap.json b/pfam_gap_rates/PPO1_DWL.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..697edc641d78e2baebc68976aaf2fe7f272304ec
--- /dev/null
+++ b/pfam_gap_rates/PPO1_DWL.gap.json
@@ -0,0 +1 @@
+{"family": "PPO1_DWL", "n_seqs": 177, "length": 57, "gap_rates": [0.2711864406779661, 0.1694915254237288, 0.07344632768361582, 0.05084745762711865, 0.04519774011299435, 0.04519774011299435, 0.03389830508474576, 0.03389830508474576, 0.01694915254237288, 0.01694915254237288, 0.01694915254237288, 0.01694915254237288, 0.01694915254237288, 0.01694915254237288, 0.01694915254237288, 0.01694915254237288, 0.01694915254237288, 0.01694915254237288, 0.01694915254237288, 0.011299435028248588, 0.01694915254237288, 0.01694915254237288, 0.03954802259887006, 0.04519774011299435, 0.02824858757062147, 0.022598870056497175, 0.022598870056497175, 0.01694915254237288, 0.01694915254237288, 0.01694915254237288, 0.022598870056497175, 0.022598870056497175, 0.022598870056497175, 0.022598870056497175, 0.9209039548022598, 0.02824858757062147, 0.03389830508474576, 0.03389830508474576, 0.03389830508474576, 0.02824858757062147, 0.02824858757062147, 0.0903954802259887, 0.11864406779661017, 0.062146892655367235, 0.062146892655367235, 0.06779661016949153, 0.9491525423728814, 0.9491525423728814, 0.9491525423728814, 0.9491525423728814, 0.07909604519774012, 0.0903954802259887, 0.10734463276836158, 0.14689265536723164, 0.192090395480226, 0.2655367231638418, 0.5988700564971752], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PPO1_KFDV.gap.json b/pfam_gap_rates/PPO1_KFDV.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..0772a56f5d7b22f1557ef4723ae8ada7bc83444f
--- /dev/null
+++ b/pfam_gap_rates/PPO1_KFDV.gap.json
@@ -0,0 +1 @@
+{"family": "PPO1_KFDV", "n_seqs": 184, "length": 144, "gap_rates": [0.41304347826086957, 0.31521739130434784, 0.30434782608695654, 0.9130434782608695, 0.27717391304347827, 0.266304347826087, 0.2391304347826087, 0.23369565217391305, 0.22826086956521738, 0.23369565217391305, 0.22826086956521738, 0.1956521739130435, 0.17391304347826086, 0.16847826086956522, 0.1793478260869565, 0.17391304347826086, 0.15217391304347827, 0.15760869565217392, 0.9293478260869565, 0.1956521739130435, 0.19021739130434784, 0.1793478260869565, 0.16847826086956522, 0.1358695652173913, 0.14673913043478262, 0.15760869565217392, 0.9347826086956522, 0.08152173913043478, 0.07065217391304347, 0.059782608695652176, 0.05434782608695652, 0.043478260869565216, 0.043478260869565216, 0.043478260869565216, 0.043478260869565216, 0.04891304347826087, 0.03804347826086957, 0.03804347826086957, 0.15760869565217392, 0.05434782608695652, 0.05434782608695652, 0.05434782608695652, 0.043478260869565216, 0.03804347826086957, 0.03804347826086957, 0.043478260869565216, 0.06521739130434782, 0.9130434782608695, 0.043478260869565216, 0.043478260869565216, 0.03804347826086957, 0.03804347826086957, 0.03804347826086957, 0.043478260869565216, 0.03804347826086957, 0.03804347826086957, 0.46195652173913043, 0.07065217391304347, 0.06521739130434782, 0.059782608695652176, 0.06521739130434782, 0.05434782608695652, 0.059782608695652176, 0.2554347826086957, 0.875, 0.8260869565217391, 0.08695652173913043, 0.059782608695652176, 0.059782608695652176, 0.059782608695652176, 0.05434782608695652, 0.05434782608695652, 0.05434782608695652, 0.05434782608695652, 0.05434782608695652, 0.05434782608695652, 0.05434782608695652, 0.05434782608695652, 0.05434782608695652, 0.05434782608695652, 0.059782608695652176, 0.05434782608695652, 0.05434782608695652, 0.21739130434782608, 0.09239130434782608, 0.09239130434782608, 0.19021739130434784, 0.75, 0.9402173913043478, 0.8967391304347826, 0.717391304347826, 0.24456521739130435, 0.2554347826086957, 0.10869565217391304, 0.8369565217391305, 0.9293478260869565, 0.7282608695652174, 0.08152173913043478, 0.07608695652173914, 0.07608695652173914, 0.07065217391304347, 0.059782608695652176, 0.059782608695652176, 0.059782608695652176, 0.059782608695652176, 0.059782608695652176, 0.059782608695652176, 0.059782608695652176, 0.059782608695652176, 0.059782608695652176, 0.059782608695652176, 0.059782608695652176, 0.06521739130434782, 0.06521739130434782, 0.06521739130434782, 0.06521739130434782, 0.07065217391304347, 0.07608695652173914, 0.07608695652173914, 0.07608695652173914, 0.07065217391304347, 0.07608695652173914, 0.07608695652173914, 0.08152173913043478, 0.08152173913043478, 0.08152173913043478, 0.08152173913043478, 0.10869565217391304, 0.10869565217391304, 0.10869565217391304, 0.24456521739130435, 0.907608695652174, 0.2717391304347826, 0.22282608695652173, 0.15760869565217392, 0.15760869565217392, 0.15760869565217392, 0.15760869565217392, 0.16304347826086957, 0.16304347826086957, 0.17391304347826086, 0.19021739130434784, 0.24456521739130435, 0.4076086956521739], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PPR_1.gap.json b/pfam_gap_rates/PPR_1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..0397c810cf366e85417540341f1647a373fcd896
--- /dev/null
+++ b/pfam_gap_rates/PPR_1.gap.json
@@ -0,0 +1 @@
+{"family": "PPR_1", "n_seqs": 3565, "length": 34, "gap_rates": [0.7775596072931277, 0.391304347826087, 0.2776998597475456, 0.20196353436185133, 0.12314165497896214, 0.05974754558204769, 0.05049088359046283, 0.04207573632538569, 0.028611500701262272, 0.016269284712482467, 0.0036465638148667602, 0.002244039270687237, 0.0005610098176718093, 0.00028050490883590464, 0.0, 0.00028050490883590464, 0.0, 0.0, 0.00028050490883590464, 0.00028050490883590464, 0.0016830294530154279, 0.0016830294530154279, 0.004488078541374474, 0.0061711079943899015, 0.011220196353436185, 0.014305750350631136, 0.01767180925666199, 0.024964936886395513, 0.028050490883590462, 0.03955119214586255, 0.06255259467040673, 0.1267882187938289, 0.21093969144460029, 0.6650771388499299], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PP_kinase_N.gap.json b/pfam_gap_rates/PP_kinase_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..9edf74ce01792346cf9fd7e6e13d29de36ffd09b
--- /dev/null
+++ b/pfam_gap_rates/PP_kinase_N.gap.json
@@ -0,0 +1 @@
+{"family": "PP_kinase_N", "n_seqs": 1316, "length": 108, "gap_rates": [0.16489361702127658, 0.04179331306990881, 0.020516717325227963, 0.0182370820668693, 0.0182370820668693, 0.016717325227963525, 0.015957446808510637, 0.015197568389057751, 0.013677811550151976, 0.013677811550151976, 0.013677811550151976, 0.013677811550151976, 0.013677811550151976, 0.013677811550151976, 0.013677811550151976, 0.011398176291793313, 0.010638297872340425, 0.009878419452887538, 0.009878419452887538, 0.011398176291793313, 0.012917933130699088, 0.0121580547112462, 0.010638297872340425, 0.009878419452887538, 0.006838905775075988, 0.006838905775075988, 0.0060790273556231, 0.0060790273556231, 0.0060790273556231, 0.0060790273556231, 0.005319148936170213, 0.0060790273556231, 0.0060790273556231, 0.0060790273556231, 0.006838905775075988, 0.006838905775075988, 0.006838905775075988, 0.006838905775075988, 0.006838905775075988, 0.006838905775075988, 0.007598784194528876, 0.007598784194528876, 0.007598784194528876, 0.007598784194528876, 0.004559270516717325, 0.004559270516717325, 0.004559270516717325, 0.004559270516717325, 0.004559270516717325, 0.004559270516717325, 0.004559270516717325, 0.004559270516717325, 0.004559270516717325, 0.03951367781155015, 0.015957446808510637, 0.010638297872340425, 0.015197568389057751, 0.016717325227963525, 0.1094224924012158, 0.08662613981762918, 0.05167173252279635, 0.03951367781155015, 0.0243161094224924, 0.02507598784194529, 0.015197568389057751, 0.8829787234042553, 0.008358662613981762, 0.007598784194528876, 0.008358662613981762, 0.0060790273556231, 0.007598784194528876, 0.007598784194528876, 0.0060790273556231, 0.006838905775075988, 0.0060790273556231, 0.0060790273556231, 0.0060790273556231, 0.0060790273556231, 0.0060790273556231, 0.0060790273556231, 0.006838905775075988, 0.008358662613981762, 0.007598784194528876, 0.008358662613981762, 0.008358662613981762, 0.008358662613981762, 0.008358662613981762, 0.00911854103343465, 0.00911854103343465, 0.00911854103343465, 0.008358662613981762, 0.00911854103343465, 0.42021276595744683, 0.009878419452887538, 0.009878419452887538, 0.009878419452887538, 0.009878419452887538, 0.010638297872340425, 0.011398176291793313, 0.011398176291793313, 0.011398176291793313, 0.0121580547112462, 0.015957446808510637, 0.017477203647416412, 0.022796352583586626, 0.04939209726443769, 0.11550151975683891, 0.7978723404255319], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PQ-loop.gap.json b/pfam_gap_rates/PQ-loop.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..df8b40a1b8c234c5f9302275d96dd7627cb8f738
--- /dev/null
+++ b/pfam_gap_rates/PQ-loop.gap.json
@@ -0,0 +1 @@
+{"family": "PQ-loop", "n_seqs": 3365, "length": 60, "gap_rates": [0.7471025260029718, 0.3836552748885587, 0.2303120356612184, 0.13937592867756315, 0.11114413075780089, 0.10014858841010402, 0.09153046062407132, 0.08053491827637445, 0.07340267459138188, 0.06092124814264487, 0.05170876671619613, 0.05052005943536404, 0.049331352154531945, 0.04606240713224369, 0.044279346210995545, 0.041307578008915304, 0.038930163447251115, 0.03863298662704309, 0.03684992570579495, 0.018424962852897474, 0.010104011887072809, 0.008023774145616641, 0.005646359583952452, 0.00475482912332838, 0.004457652303120356, 0.003863298662704309, 0.003566121842496285, 0.003566121842496285, 0.012481426448737, 0.005349182763744428, 0.00713224368499257, 0.005052005943536404, 0.0062407132243685, 0.007726597325408618, 0.008023774145616641, 0.00861812778603269, 0.00861812778603269, 0.00861812778603269, 0.009212481426448737, 0.009806835066864784, 0.01099554234769688, 0.01188707280832095, 0.013075780089153046, 0.015156017830609212, 0.01723625557206538, 0.01901931649331352, 0.020802377414561663, 0.023476968796433878, 0.02674591381872214, 0.031203566121842496, 0.03536404160475483, 0.04398216939078752, 0.05943536404160475, 0.08172362555720654, 0.13789004457652304, 0.21901931649331352, 0.3096582466567608, 0.41783060921248144, 0.5720653789004457, 0.8106983655274889], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PRA1.gap.json b/pfam_gap_rates/PRA1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..72d6329322c858b20887de58cc2d0cf0dd1840d2
--- /dev/null
+++ b/pfam_gap_rates/PRA1.gap.json
@@ -0,0 +1 @@
+{"family": "PRA1", "n_seqs": 718, "length": 182, "gap_rates": [0.6044568245125348, 0.36908077994428967, 0.2799442896935933, 0.2298050139275766, 0.21309192200557103, 0.21030640668523676, 0.1977715877437326, 0.19080779944289694, 0.17548746518105848, 0.16434540389972144, 0.1532033426183844, 0.1532033426183844, 0.8454038997214485, 0.24651810584958217, 0.22701949860724233, 0.12813370473537605, 0.116991643454039, 0.09331476323119778, 0.0905292479108635, 0.08635097493036212, 0.07938718662952646, 0.8844011142061281, 0.871866295264624, 0.1309192200557103, 0.08635097493036212, 0.07520891364902507, 0.06963788300835655, 0.06545961002785515, 0.06545961002785515, 0.06406685236768803, 0.06267409470752089, 0.06128133704735376, 0.05988857938718663, 0.055710306406685235, 0.057103064066852366, 0.057103064066852366, 0.057103064066852366, 0.057103064066852366, 0.054317548746518104, 0.05153203342618384, 0.05013927576601671, 0.04456824512534819, 0.04178272980501393, 0.0403899721448468, 0.0403899721448468, 0.0403899721448468, 0.037604456824512536, 0.036211699164345405, 0.037604456824512536, 0.03899721448467967, 0.037604456824512536, 0.036211699164345405, 0.033426183844011144, 0.03203342618384401, 0.033426183844011144, 0.033426183844011144, 0.037604456824512536, 0.034818941504178275, 0.034818941504178275, 0.034818941504178275, 0.03899721448467967, 0.03899721448467967, 0.033426183844011144, 0.03203342618384401, 0.03064066852367688, 0.03064066852367688, 0.027855153203342618, 0.02924791086350975, 0.027855153203342618, 0.027855153203342618, 0.03203342618384401, 0.036211699164345405, 0.036211699164345405, 0.036211699164345405, 0.034818941504178275, 0.03203342618384401, 0.04317548746518106, 0.0403899721448468, 0.8844011142061281, 0.04317548746518106, 0.06406685236768803, 0.6671309192200557, 0.8802228412256268, 0.8231197771587744, 0.552924791086351, 0.055710306406685235, 0.05013927576601671, 0.04735376044568245, 0.04874651810584958, 0.15041782729805014, 0.1309192200557103, 0.10863509749303621, 0.10445682451253482, 0.057103064066852366, 0.052924791086350974, 0.057103064066852366, 0.9122562674094707, 0.057103064066852366, 0.05013927576601671, 0.04735376044568245, 0.8523676880222841, 0.9108635097493036, 0.9164345403899722, 0.9206128133704735, 0.924791086350975, 0.924791086350975, 0.9261838440111421, 0.9317548746518106, 0.9317548746518106, 0.9317548746518106, 0.9317548746518106, 0.9317548746518106, 0.9345403899721448, 0.9387186629526463, 0.9401114206128134, 0.9415041782729805, 0.9401114206128134, 0.9387186629526463, 0.9317548746518106, 0.9317548746518106, 0.9317548746518106, 0.9317548746518106, 0.9317548746518106, 0.9289693593314763, 0.924791086350975, 0.924791086350975, 0.9220055710306406, 0.9192200557103064, 0.9136490250696379, 0.8760445682451253, 0.841225626740947, 0.04317548746518106, 0.0403899721448468, 0.0403899721448468, 0.0403899721448468, 0.04178272980501393, 0.0403899721448468, 0.0403899721448468, 0.03899721448467967, 0.03899721448467967, 0.03899721448467967, 0.04317548746518106, 0.04317548746518106, 0.04317548746518106, 0.04456824512534819, 0.04456824512534819, 0.04456824512534819, 0.04456824512534819, 0.08495821727019498, 0.052924791086350974, 0.04317548746518106, 0.04317548746518106, 0.04317548746518106, 0.04317548746518106, 0.04456824512534819, 0.04456824512534819, 0.04456824512534819, 0.04456824512534819, 0.04456824512534819, 0.04596100278551532, 0.05013927576601671, 0.054317548746518104, 0.054317548746518104, 0.0584958217270195, 0.0584958217270195, 0.06267409470752089, 0.07103064066852367, 0.07103064066852367, 0.07242339832869081, 0.07242339832869081, 0.07242339832869081, 0.07799442896935933, 0.10027855153203342, 0.181058495821727, 0.23119777158774374, 0.2799442896935933, 0.3203342618384401, 0.4136490250696379, 0.4387186629526462, 0.49025069637883006, 0.637883008356546, 0.862116991643454], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PRO8NT.gap.json b/pfam_gap_rates/PRO8NT.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..4fe733ff47d12bcfc06fb8321ba37622671111a0
--- /dev/null
+++ b/pfam_gap_rates/PRO8NT.gap.json
@@ -0,0 +1 @@
+{"family": "PRO8NT", "n_seqs": 343, "length": 152, "gap_rates": [0.1749271137026239, 0.1661807580174927, 0.13702623906705538, 0.07580174927113703, 0.0728862973760933, 0.0728862973760933, 0.06997084548104957, 0.06997084548104957, 0.06705539358600583, 0.06705539358600583, 0.06705539358600583, 0.06705539358600583, 0.06705539358600583, 0.061224489795918366, 0.061224489795918366, 0.061224489795918366, 0.061224489795918366, 0.0641399416909621, 0.04956268221574344, 0.04956268221574344, 0.04956268221574344, 0.04956268221574344, 0.04664723032069971, 0.04664723032069971, 0.043731778425655975, 0.04081632653061224, 0.037900874635568516, 0.037900874635568516, 0.03498542274052478, 0.029154518950437316, 0.029154518950437316, 0.029154518950437316, 0.029154518950437316, 0.026239067055393587, 0.026239067055393587, 0.026239067055393587, 0.029154518950437316, 0.029154518950437316, 0.029154518950437316, 0.029154518950437316, 0.029154518950437316, 0.03206997084548105, 0.03206997084548105, 0.03206997084548105, 0.03206997084548105, 0.03206997084548105, 0.03206997084548105, 0.03206997084548105, 0.029154518950437316, 0.029154518950437316, 0.03206997084548105, 0.03206997084548105, 0.03206997084548105, 0.03206997084548105, 0.03206997084548105, 0.037900874635568516, 0.03206997084548105, 0.03206997084548105, 0.04081632653061224, 0.043731778425655975, 0.037900874635568516, 0.037900874635568516, 0.04081632653061224, 0.04081632653061224, 0.04081632653061224, 0.04081632653061224, 0.04081632653061224, 0.04081632653061224, 0.04081632653061224, 0.04081632653061224, 0.04081632653061224, 0.043731778425655975, 0.043731778425655975, 0.043731778425655975, 0.043731778425655975, 0.04664723032069971, 0.043731778425655975, 0.04956268221574344, 0.04956268221574344, 0.04956268221574344, 0.04664723032069971, 0.04664723032069971, 0.04664723032069971, 0.04664723032069971, 0.04664723032069971, 0.04664723032069971, 0.04956268221574344, 0.04956268221574344, 0.04956268221574344, 0.04664723032069971, 0.04956268221574344, 0.052478134110787174, 0.052478134110787174, 0.052478134110787174, 0.052478134110787174, 0.052478134110787174, 0.04956268221574344, 0.04956268221574344, 0.04664723032069971, 0.043731778425655975, 0.043731778425655975, 0.04956268221574344, 0.052478134110787174, 0.04956268221574344, 0.04664723032069971, 0.04664723032069971, 0.04664723032069971, 0.0641399416909621, 0.04664723032069971, 0.04664723032069971, 0.04664723032069971, 0.04956268221574344, 0.04956268221574344, 0.04956268221574344, 0.04956268221574344, 0.04956268221574344, 0.04956268221574344, 0.04956268221574344, 0.04956268221574344, 0.04956268221574344, 0.04956268221574344, 0.052478134110787174, 0.05539358600583091, 0.05539358600583091, 0.04956268221574344, 0.052478134110787174, 0.05539358600583091, 0.05539358600583091, 0.05539358600583091, 0.05539358600583091, 0.05539358600583091, 0.05539358600583091, 0.05539358600583091, 0.05539358600583091, 0.05539358600583091, 0.05539358600583091, 0.05539358600583091, 0.061224489795918366, 0.05539358600583091, 0.05830903790087463, 0.05830903790087463, 0.061224489795918366, 0.07871720116618076, 0.08454810495626822, 0.08454810495626822, 0.08454810495626822, 0.08746355685131195, 0.09037900874635568, 0.09329446064139942, 0.10204081632653061, 0.10204081632653061, 0.12244897959183673], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PROCT.gap.json b/pfam_gap_rates/PROCT.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..32fbfad8d4ebaf90a7cae1601c92a635142371b2
--- /dev/null
+++ b/pfam_gap_rates/PROCT.gap.json
@@ -0,0 +1 @@
+{"family": "PROCT", "n_seqs": 323, "length": 127, "gap_rates": [0.20123839009287925, 0.07430340557275542, 0.05263157894736842, 0.04024767801857585, 0.03715170278637771, 0.034055727554179564, 0.030959752321981424, 0.030959752321981424, 0.04024767801857585, 0.030959752321981424, 0.030959752321981424, 0.030959752321981424, 0.030959752321981424, 0.030959752321981424, 0.030959752321981424, 0.02786377708978328, 0.02786377708978328, 0.02786377708978328, 0.02786377708978328, 0.02786377708978328, 0.02786377708978328, 0.02786377708978328, 0.030959752321981424, 0.02786377708978328, 0.030959752321981424, 0.030959752321981424, 0.030959752321981424, 0.02786377708978328, 0.04643962848297214, 0.030959752321981424, 0.02786377708978328, 0.030959752321981424, 0.034055727554179564, 0.5727554179566563, 0.0804953560371517, 0.934984520123839, 0.04953560371517028, 0.043343653250773995, 0.03715170278637771, 0.03715170278637771, 0.03715170278637771, 0.03715170278637771, 0.034055727554179564, 0.034055727554179564, 0.034055727554179564, 0.030959752321981424, 0.030959752321981424, 0.034055727554179564, 0.030959752321981424, 0.034055727554179564, 0.034055727554179564, 0.034055727554179564, 0.034055727554179564, 0.034055727554179564, 0.034055727554179564, 0.034055727554179564, 0.034055727554179564, 0.034055727554179564, 0.02786377708978328, 0.02786377708978328, 0.02786377708978328, 0.02476780185758514, 0.02476780185758514, 0.02476780185758514, 0.02786377708978328, 0.02786377708978328, 0.043343653250773995, 0.02786377708978328, 0.02476780185758514, 0.02476780185758514, 0.02476780185758514, 0.02476780185758514, 0.02476780185758514, 0.02476780185758514, 0.8792569659442725, 0.021671826625386997, 0.030959752321981424, 0.04024767801857585, 0.034055727554179564, 0.034055727554179564, 0.034055727554179564, 0.8018575851393189, 0.7987616099071208, 0.034055727554179564, 0.034055727554179564, 0.030959752321981424, 0.030959752321981424, 0.034055727554179564, 0.034055727554179564, 0.034055727554179564, 0.03715170278637771, 0.03715170278637771, 0.04024767801857585, 0.04024767801857585, 0.04024767801857585, 0.04024767801857585, 0.04024767801857585, 0.04024767801857585, 0.04024767801857585, 0.04024767801857585, 0.04024767801857585, 0.043343653250773995, 0.043343653250773995, 0.043343653250773995, 0.043343653250773995, 0.043343653250773995, 0.043343653250773995, 0.043343653250773995, 0.043343653250773995, 0.05263157894736842, 0.05263157894736842, 0.05572755417956656, 0.05572755417956656, 0.05572755417956656, 0.23839009287925697, 0.28792569659442724, 0.8761609907120743, 0.5572755417956656, 0.1238390092879257, 0.12074303405572756, 0.11764705882352941, 0.12693498452012383, 0.13622291021671826, 0.15479876160990713, 0.17337461300309598, 0.21052631578947367, 0.2848297213622291], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PSI_integrin.gap.json b/pfam_gap_rates/PSI_integrin.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..07ff2f9ff80461c8cc5ab4c41038a394cde126f1
--- /dev/null
+++ b/pfam_gap_rates/PSI_integrin.gap.json
@@ -0,0 +1 @@
+{"family": "PSI_integrin", "n_seqs": 191, "length": 52, "gap_rates": [0.5287958115183246, 0.20418848167539266, 0.14136125654450263, 0.13612565445026178, 0.13612565445026178, 0.1099476439790576, 0.4712041884816754, 0.450261780104712, 0.005235602094240838, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.1256544502617801, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.005235602094240838, 0.06282722513089005, 0.07329842931937172, 0.3193717277486911, 0.4031413612565445, 0.7486910994764397, 0.5392670157068062, 0.3717277486910995, 0.2879581151832461, 0.07329842931937172, 0.07329842931937172, 0.07329842931937172, 0.07329842931937172, 0.07329842931937172, 0.07853403141361257, 0.08376963350785341, 0.08900523560209424, 0.09947643979057591, 0.12041884816753927, 0.13612565445026178, 0.14659685863874344, 0.18324607329842932, 0.21465968586387435, 0.193717277486911, 0.193717277486911, 0.4973821989528796], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PTPlike_phytase.gap.json b/pfam_gap_rates/PTPlike_phytase.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..353f2dd6492b2261c8dd3057f15a294699d462e1
--- /dev/null
+++ b/pfam_gap_rates/PTPlike_phytase.gap.json
@@ -0,0 +1 @@
+{"family": "PTPlike_phytase", "n_seqs": 444, "length": 183, "gap_rates": [0.3130630630630631, 0.13063063063063063, 0.11711711711711711, 0.11486486486486487, 0.11036036036036036, 0.10810810810810811, 0.10810810810810811, 0.10135135135135136, 0.10135135135135136, 0.9369369369369369, 0.9369369369369369, 0.9369369369369369, 0.9369369369369369, 0.10135135135135136, 0.10135135135135136, 0.0990990990990991, 0.0990990990990991, 0.10135135135135136, 0.0990990990990991, 0.0990990990990991, 0.0990990990990991, 0.0990990990990991, 0.0990990990990991, 0.0990990990990991, 0.0990990990990991, 0.09684684684684684, 0.0945945945945946, 0.09009009009009009, 0.09009009009009009, 0.09009009009009009, 0.09009009009009009, 0.12837837837837837, 0.668918918918919, 0.27702702702702703, 0.17792792792792791, 0.17567567567567569, 0.1554054054054054, 0.13288288288288289, 0.1036036036036036, 0.0945945945945946, 0.08558558558558559, 0.08558558558558559, 0.08108108108108109, 0.08333333333333333, 0.08783783783783784, 0.08783783783783784, 0.08783783783783784, 0.09234234234234234, 0.0990990990990991, 0.11036036036036036, 0.1036036036036036, 0.12837837837837837, 0.11711711711711711, 0.11261261261261261, 0.10135135135135136, 0.0990990990990991, 0.09009009009009009, 0.07882882882882883, 0.08783783783783784, 0.08333333333333333, 0.07882882882882883, 0.07432432432432433, 0.06981981981981981, 0.07207207207207207, 0.06981981981981981, 0.06981981981981981, 0.07882882882882883, 0.1036036036036036, 0.10135135135135136, 0.0945945945945946, 0.09009009009009009, 0.08333333333333333, 0.08783783783783784, 0.09009009009009009, 0.48423423423423423, 0.9391891891891891, 0.9481981981981982, 0.8536036036036037, 0.5495495495495496, 0.5225225225225225, 0.48423423423423423, 0.11036036036036036, 0.13288288288288289, 0.12162162162162163, 0.10585585585585586, 0.09009009009009009, 0.2725225225225225, 0.26576576576576577, 0.25675675675675674, 0.25, 0.19594594594594594, 0.2905405405405405, 0.4144144144144144, 0.8851351351351351, 0.9301801801801802, 0.9166666666666666, 0.4346846846846847, 0.36711711711711714, 0.2747747747747748, 0.17342342342342343, 0.15990990990990991, 0.14414414414414414, 0.13513513513513514, 0.09009009009009009, 0.038288288288288286, 0.036036036036036036, 0.9481981981981982, 0.036036036036036036, 0.038288288288288286, 0.038288288288288286, 0.04279279279279279, 0.038288288288288286, 0.033783783783783786, 0.03153153153153153, 0.033783783783783786, 0.036036036036036036, 0.04054054054054054, 0.036036036036036036, 0.02702702702702703, 0.02927927927927928, 0.02702702702702703, 0.02927927927927928, 0.03153153153153153, 0.03153153153153153, 0.033783783783783786, 0.02927927927927928, 0.03153153153153153, 0.03153153153153153, 0.033783783783783786, 0.02927927927927928, 0.02702702702702703, 0.02702702702702703, 0.02702702702702703, 0.02927927927927928, 0.02702702702702703, 0.02702702702702703, 0.024774774774774775, 0.02927927927927928, 0.07882882882882883, 0.036036036036036036, 0.03153153153153153, 0.03153153153153153, 0.038288288288288286, 0.04054054054054054, 0.6666666666666666, 0.060810810810810814, 0.13288288288288289, 0.7725225225225225, 0.8513513513513513, 0.8581081081081081, 0.9121621621621622, 0.9414414414414415, 0.9279279279279279, 0.9009009009009009, 0.8536036036036037, 0.8468468468468469, 0.7657657657657657, 0.06531531531531531, 0.04504504504504504, 0.04504504504504504, 0.04504504504504504, 0.0472972972972973, 0.0472972972972973, 0.0472972972972973, 0.0472972972972973, 0.0472972972972973, 0.04954954954954955, 0.05630630630630631, 0.05630630630630631, 0.05855855855855856, 0.060810810810810814, 0.060810810810810814, 0.06306306306306306, 0.06981981981981981, 0.06306306306306306, 0.06531531531531531, 0.06531531531531531, 0.06756756756756757, 0.06981981981981981, 0.07207207207207207, 0.08558558558558559, 0.18693693693693694, 0.6891891891891891], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PTSIIB_sorb.gap.json b/pfam_gap_rates/PTSIIB_sorb.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..49c931b854be2e316212838a13454f2f080a8bc2
--- /dev/null
+++ b/pfam_gap_rates/PTSIIB_sorb.gap.json
@@ -0,0 +1 @@
+{"family": "PTSIIB_sorb", "n_seqs": 825, "length": 151, "gap_rates": [0.2739393939393939, 0.10545454545454545, 0.04242424242424243, 0.030303030303030304, 0.030303030303030304, 0.02909090909090909, 0.027878787878787878, 0.027878787878787878, 0.027878787878787878, 0.027878787878787878, 0.02666666666666667, 0.02666666666666667, 0.02666666666666667, 0.02666666666666667, 0.048484848484848485, 0.027878787878787878, 0.02666666666666667, 0.025454545454545455, 0.025454545454545455, 0.025454545454545455, 0.025454545454545455, 0.025454545454545455, 0.025454545454545455, 0.025454545454545455, 0.025454545454545455, 0.025454545454545455, 0.025454545454545455, 0.025454545454545455, 0.02303030303030303, 0.024242424242424242, 0.024242424242424242, 0.024242424242424242, 0.024242424242424242, 0.024242424242424242, 0.024242424242424242, 0.02666666666666667, 0.02666666666666667, 0.025454545454545455, 0.025454545454545455, 0.025454545454545455, 0.025454545454545455, 0.025454545454545455, 0.025454545454545455, 0.02303030303030303, 0.02181818181818182, 0.02181818181818182, 0.020606060606060607, 0.020606060606060607, 0.019393939393939394, 0.04606060606060606, 0.07636363636363637, 0.04363636363636364, 0.019393939393939394, 0.019393939393939394, 0.020606060606060607, 0.020606060606060607, 0.020606060606060607, 0.020606060606060607, 0.020606060606060607, 0.020606060606060607, 0.019393939393939394, 0.020606060606060607, 0.02181818181818182, 0.02181818181818182, 0.02181818181818182, 0.02181818181818182, 0.02181818181818182, 0.02181818181818182, 0.020606060606060607, 0.06787878787878789, 0.07272727272727272, 0.1806060606060606, 0.024242424242424242, 0.019393939393939394, 0.019393939393939394, 0.019393939393939394, 0.01818181818181818, 0.014545454545454545, 0.01575757575757576, 0.01575757575757576, 0.01575757575757576, 0.01696969696969697, 0.01575757575757576, 0.014545454545454545, 0.01575757575757576, 0.01575757575757576, 0.01575757575757576, 0.01575757575757576, 0.01575757575757576, 0.01575757575757576, 0.014545454545454545, 0.01575757575757576, 0.01575757575757576, 0.02181818181818182, 0.020606060606060607, 0.9478787878787879, 0.9284848484848485, 0.01696969696969697, 0.01575757575757576, 0.01575757575757576, 0.01575757575757576, 0.01575757575757576, 0.01575757575757576, 0.01575757575757576, 0.01575757575757576, 0.01575757575757576, 0.01575757575757576, 0.01696969696969697, 0.01818181818181818, 0.020606060606060607, 0.02181818181818182, 0.019393939393939394, 0.019393939393939394, 0.019393939393939394, 0.019393939393939394, 0.019393939393939394, 0.019393939393939394, 0.024242424242424242, 0.02666666666666667, 0.02181818181818182, 0.02181818181818182, 0.02181818181818182, 0.02181818181818182, 0.02303030303030303, 0.024242424242424242, 0.024242424242424242, 0.024242424242424242, 0.024242424242424242, 0.024242424242424242, 0.024242424242424242, 0.024242424242424242, 0.024242424242424242, 0.024242424242424242, 0.024242424242424242, 0.024242424242424242, 0.02666666666666667, 0.9466666666666667, 0.02909090909090909, 0.025454545454545455, 0.024242424242424242, 0.025454545454545455, 0.025454545454545455, 0.02666666666666667, 0.02666666666666667, 0.02666666666666667, 0.02909090909090909, 0.03272727272727273, 0.04363636363636364, 0.09575757575757576, 0.24848484848484848, 0.7781818181818182], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PUCC.gap.json b/pfam_gap_rates/PUCC.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e75b396b93de8fa073fce316df051aae55273305
--- /dev/null
+++ b/pfam_gap_rates/PUCC.gap.json
@@ -0,0 +1 @@
+{"family": "PUCC", "n_seqs": 237, "length": 447, "gap_rates": [0.16877637130801687, 0.08860759493670886, 0.08860759493670886, 0.08860759493670886, 0.08860759493670886, 0.08860759493670886, 0.08860759493670886, 0.08860759493670886, 0.08860759493670886, 0.08860759493670886, 0.08860759493670886, 0.08860759493670886, 0.08860759493670886, 0.08860759493670886, 0.08860759493670886, 0.08860759493670886, 0.08860759493670886, 0.08438818565400844, 0.0759493670886076, 0.0759493670886076, 0.0759493670886076, 0.0759493670886076, 0.0759493670886076, 0.0759493670886076, 0.0759493670886076, 0.0759493670886076, 0.0759493670886076, 0.08016877637130802, 0.08016877637130802, 0.06751054852320675, 0.06751054852320675, 0.06751054852320675, 0.06329113924050633, 0.06329113924050633, 0.06329113924050633, 0.06329113924050633, 0.06329113924050633, 0.06329113924050633, 0.06329113924050633, 0.06329113924050633, 0.09282700421940929, 0.10126582278481013, 0.6455696202531646, 0.29535864978902954, 0.29535864978902954, 0.26582278481012656, 0.26582278481012656, 0.06329113924050633, 0.06329113924050633, 0.06751054852320675, 0.05907172995780591, 0.05907172995780591, 0.05907172995780591, 0.05907172995780591, 0.05907172995780591, 0.05907172995780591, 0.05907172995780591, 0.05907172995780591, 0.05907172995780591, 0.05907172995780591, 0.05907172995780591, 0.05907172995780591, 0.0759493670886076, 0.06329113924050633, 0.05907172995780591, 0.06329113924050633, 0.05907172995780591, 0.05907172995780591, 0.05485232067510549, 0.05485232067510549, 0.05485232067510549, 0.05485232067510549, 0.05485232067510549, 0.05485232067510549, 0.05485232067510549, 0.05485232067510549, 0.6582278481012658, 0.6540084388185654, 0.5822784810126582, 0.4092827004219409, 0.3881856540084388, 0.7848101265822784, 0.9240506329113924, 0.9324894514767933, 0.9113924050632911, 0.7552742616033755, 0.3670886075949367, 0.350210970464135, 0.05907172995780591, 0.05907172995780591, 0.06329113924050633, 0.05485232067510549, 0.05907172995780591, 0.05485232067510549, 0.05907172995780591, 0.05907172995780591, 0.05485232067510549, 0.05485232067510549, 0.05485232067510549, 0.05485232067510549, 0.05485232067510549, 0.05485232067510549, 0.05485232067510549, 0.05485232067510549, 0.05485232067510549, 0.05485232067510549, 0.05485232067510549, 0.05485232067510549, 0.05485232067510549, 0.05485232067510549, 0.05907172995780591, 0.05485232067510549, 0.05485232067510549, 0.05485232067510549, 0.05485232067510549, 0.05485232067510549, 0.05485232067510549, 0.05485232067510549, 0.05485232067510549, 0.05485232067510549, 0.05485232067510549, 0.05485232067510549, 0.05485232067510549, 0.05485232067510549, 0.05485232067510549, 0.05907172995780591, 0.05485232067510549, 0.05485232067510549, 0.05485232067510549, 0.05485232067510549, 0.05485232067510549, 0.05907172995780591, 0.05907172995780591, 0.05907172995780591, 0.05907172995780591, 0.05907172995780591, 0.05907172995780591, 0.05907172995780591, 0.05907172995780591, 0.05907172995780591, 0.05907172995780591, 0.05907172995780591, 0.05907172995780591, 0.05907172995780591, 0.05907172995780591, 0.06329113924050633, 0.06329113924050633, 0.06329113924050633, 0.06329113924050633, 0.06329113924050633, 0.06329113924050633, 0.06329113924050633, 0.06329113924050633, 0.06751054852320675, 0.07172995780590717, 0.07172995780590717, 0.7890295358649789, 0.7890295358649789, 0.8227848101265823, 0.8354430379746836, 0.8818565400843882, 0.9113924050632911, 0.9113924050632911, 0.9240506329113924, 0.9324894514767933, 0.9324894514767933, 0.9282700421940928, 0.919831223628692, 0.9113924050632911, 0.8945147679324894, 0.8734177215189873, 0.8312236286919831, 0.8227848101265823, 0.7890295358649789, 0.7890295358649789, 0.07172995780590717, 0.08438818565400844, 0.08016877637130802, 0.08016877637130802, 0.08016877637130802, 0.0759493670886076, 0.07172995780590717, 0.07172995780590717, 0.07172995780590717, 0.07172995780590717, 0.07172995780590717, 0.07172995780590717, 0.07172995780590717, 0.07172995780590717, 0.07172995780590717, 0.07172995780590717, 0.07172995780590717, 0.07172995780590717, 0.07172995780590717, 0.07172995780590717, 0.07172995780590717, 0.07172995780590717, 0.07172995780590717, 0.07172995780590717, 0.07172995780590717, 0.07172995780590717, 0.07172995780590717, 0.07172995780590717, 0.0759493670886076, 0.0759493670886076, 0.08016877637130802, 0.0759493670886076, 0.08016877637130802, 0.0759493670886076, 0.0759493670886076, 0.09282700421940929, 0.6877637130801688, 0.8481012658227848, 0.8987341772151899, 0.919831223628692, 0.8860759493670886, 0.7172995780590717, 0.6118143459915611, 0.4050632911392405, 0.2109704641350211, 0.1308016877637131, 0.08438818565400844, 0.0759493670886076, 0.0759493670886076, 0.0759493670886076, 0.08016877637130802, 0.10548523206751055, 0.08438818565400844, 0.08016877637130802, 0.08438818565400844, 0.08016877637130802, 0.08438818565400844, 0.08438818565400844, 0.08860759493670886, 0.08860759493670886, 0.08860759493670886, 0.7721518987341772, 0.08438818565400844, 0.08016877637130802, 0.08016877637130802, 0.08016877637130802, 0.08016877637130802, 0.08016877637130802, 0.08016877637130802, 0.08016877637130802, 0.08016877637130802, 0.08016877637130802, 0.08016877637130802, 0.08016877637130802, 0.08438818565400844, 0.08438818565400844, 0.08438818565400844, 0.08438818565400844, 0.08438818565400844, 0.08438818565400844, 0.08438818565400844, 0.08860759493670886, 0.08438818565400844, 0.08438818565400844, 0.08438818565400844, 0.08438818565400844, 0.08438818565400844, 0.08438818565400844, 0.08438818565400844, 0.08438818565400844, 0.08438818565400844, 0.08438818565400844, 0.08438818565400844, 0.08438818565400844, 0.08438818565400844, 0.08438818565400844, 0.08438818565400844, 0.08438818565400844, 0.08438818565400844, 0.08438818565400844, 0.06751054852320675, 0.05907172995780591, 0.05907172995780591, 0.05907172995780591, 0.05907172995780591, 0.05907172995780591, 0.05907172995780591, 0.05907172995780591, 0.05907172995780591, 0.05907172995780591, 0.05907172995780591, 0.05907172995780591, 0.05907172995780591, 0.05907172995780591, 0.05907172995780591, 0.05907172995780591, 0.06329113924050633, 0.05907172995780591, 0.06329113924050633, 0.05907172995780591, 0.06329113924050633, 0.05907172995780591, 0.05907172995780591, 0.06751054852320675, 0.06329113924050633, 0.06751054852320675, 0.15611814345991562, 0.06751054852320675, 0.05907172995780591, 0.05907172995780591, 0.05907172995780591, 0.05907172995780591, 0.06329113924050633, 0.05485232067510549, 0.06329113924050633, 0.05485232067510549, 0.05485232067510549, 0.05485232067510549, 0.05485232067510549, 0.05485232067510549, 0.05907172995780591, 0.05485232067510549, 0.05485232067510549, 0.05485232067510549, 0.05485232067510549, 0.05485232067510549, 0.05485232067510549, 0.05485232067510549, 0.05485232067510549, 0.05907172995780591, 0.05485232067510549, 0.05907172995780591, 0.06329113924050633, 0.06329113924050633, 0.05907172995780591, 0.05907172995780591, 0.05485232067510549, 0.8987341772151899, 0.9156118143459916, 0.8734177215189873, 0.05485232067510549, 0.05907172995780591, 0.05063291139240506, 0.05063291139240506, 0.05063291139240506, 0.05063291139240506, 0.05063291139240506, 0.05063291139240506, 0.05063291139240506, 0.05063291139240506, 0.05063291139240506, 0.05063291139240506, 0.05063291139240506, 0.05063291139240506, 0.05063291139240506, 0.05063291139240506, 0.05063291139240506, 0.05063291139240506, 0.05063291139240506, 0.05063291139240506, 0.05063291139240506, 0.05063291139240506, 0.05063291139240506, 0.05063291139240506, 0.05063291139240506, 0.05063291139240506, 0.05063291139240506, 0.05063291139240506, 0.05063291139240506, 0.05063291139240506, 0.06329113924050633, 0.05485232067510549, 0.06329113924050633, 0.05907172995780591, 0.05063291139240506, 0.05063291139240506, 0.759493670886076, 0.8227848101265823, 0.7552742616033755, 0.05063291139240506, 0.0759493670886076, 0.0759493670886076, 0.0759493670886076, 0.0759493670886076, 0.0759493670886076, 0.0759493670886076, 0.0759493670886076, 0.0759493670886076, 0.0759493670886076, 0.0759493670886076, 0.0759493670886076, 0.0759493670886076, 0.0759493670886076, 0.0759493670886076, 0.0759493670886076, 0.0759493670886076, 0.0759493670886076, 0.0759493670886076, 0.0759493670886076, 0.0759493670886076, 0.0759493670886076, 0.0759493670886076, 0.0759493670886076, 0.0759493670886076, 0.0759493670886076, 0.0759493670886076, 0.08016877637130802, 0.08016877637130802, 0.08016877637130802, 0.08016877637130802, 0.08016877637130802, 0.08016877637130802, 0.32489451476793246, 0.6244725738396625, 0.6708860759493671, 0.6835443037974683, 0.6962025316455697, 0.6835443037974683, 0.6751054852320675, 0.6286919831223629, 0.620253164556962, 0.4050632911392405, 0.08016877637130802, 0.08016877637130802, 0.08016877637130802, 0.08016877637130802, 0.08016877637130802, 0.08016877637130802, 0.08016877637130802, 0.08016877637130802, 0.08016877637130802, 0.08016877637130802, 0.08016877637130802, 0.08016877637130802, 0.08016877637130802, 0.08438818565400844, 0.08438818565400844, 0.08438818565400844, 0.08438818565400844, 0.08438818565400844, 0.08438818565400844, 0.08438818565400844, 0.08438818565400844, 0.08438818565400844, 0.0970464135021097, 0.10126582278481013, 0.12658227848101267, 0.13924050632911392, 0.1940928270042194, 0.270042194092827, 0.39662447257383965, 0.6666666666666666], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Paf1.gap.json b/pfam_gap_rates/Paf1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..6d274b207853999aaaa2e26eb182b0150cb835ce
--- /dev/null
+++ b/pfam_gap_rates/Paf1.gap.json
@@ -0,0 +1 @@
+{"family": "Paf1", "n_seqs": 349, "length": 579, "gap_rates": [0.4699140401146132, 0.25787965616045844, 0.25501432664756446, 0.2521489971346705, 0.24068767908309455, 0.2349570200573066, 0.23209169054441262, 0.22636103151862463, 0.22636103151862463, 0.22636103151862463, 0.2177650429799427, 0.2148997134670487, 0.21203438395415472, 0.20916905444126074, 0.20916905444126074, 0.20916905444126074, 0.20916905444126074, 0.20916905444126074, 0.20916905444126074, 0.20916905444126074, 0.20916905444126074, 0.20916905444126074, 0.20916905444126074, 0.20916905444126074, 0.20916905444126074, 0.20916905444126074, 0.20916905444126074, 0.20630372492836677, 0.839541547277937, 0.8481375358166189, 0.7392550143266475, 0.2034383954154728, 0.19197707736389685, 0.18911174785100288, 0.18911174785100288, 0.18911174785100288, 0.2148997134670487, 0.2148997134670487, 0.6848137535816619, 0.19197707736389685, 0.19197707736389685, 0.19197707736389685, 0.19484240687679083, 0.18911174785100288, 0.18624641833810887, 0.18624641833810887, 0.18624641833810887, 0.18624641833810887, 0.18624641833810887, 0.1833810888252149, 0.17765042979942694, 0.17478510028653296, 0.9484240687679083, 0.9426934097421203, 0.16905444126074498, 0.16905444126074498, 0.16905444126074498, 0.16905444126074498, 0.17191977077363896, 0.17765042979942694, 0.16332378223495703, 0.166189111747851, 0.16332378223495703, 0.16045845272206305, 0.16045845272206305, 0.16045845272206305, 0.16045845272206305, 0.16045845272206305, 0.16045845272206305, 0.16045845272206305, 0.16332378223495703, 0.166189111747851, 0.16905444126074498, 0.3954154727793696, 0.18624641833810887, 0.5386819484240688, 0.5243553008595988, 0.4498567335243553, 0.4326647564469914, 0.6217765042979942, 0.6475644699140402, 0.8796561604584527, 0.9025787965616046, 0.8510028653295129, 0.6361031518624641, 0.6131805157593123, 0.40114613180515757, 0.3209169054441261, 0.1977077363896848, 0.19197707736389685, 0.18624641833810887, 0.19197707736389685, 0.19197707736389685, 0.19197707736389685, 0.19197707736389685, 0.1833810888252149, 0.1833810888252149, 0.1833810888252149, 0.1833810888252149, 0.1833810888252149, 0.1833810888252149, 0.1833810888252149, 0.44412607449856734, 0.9398280802292264, 0.9426934097421203, 0.9426934097421203, 0.9426934097421203, 0.9369627507163324, 0.44412607449856734, 0.4269340974212034, 0.42406876790830944, 0.2148997134670487, 0.20057306590257878, 0.18911174785100288, 0.18624641833810887, 0.18911174785100288, 0.20057306590257878, 0.19197707736389685, 0.8538681948424068, 0.8681948424068768, 0.8739255014326648, 0.8939828080229226, 0.9111747851002865, 0.9426934097421203, 0.9484240687679083, 0.9369627507163324, 0.9054441260744985, 0.8796561604584527, 0.8681948424068768, 0.8653295128939829, 0.8510028653295129, 0.2607449856733524, 0.18911174785100288, 0.18624641833810887, 0.17765042979942694, 0.18051575931232092, 0.17765042979942694, 0.17191977077363896, 0.17191977077363896, 0.17191977077363896, 0.17191977077363896, 0.17191977077363896, 0.17191977077363896, 0.17765042979942694, 0.17191977077363896, 0.17191977077363896, 0.17478510028653296, 0.17478510028653296, 0.17765042979942694, 0.8194842406876791, 0.3467048710601719, 0.3209169054441261, 0.29512893982808025, 0.2922636103151863, 0.2722063037249284, 0.3151862464183381, 0.3209169054441261, 0.3982808022922636, 0.670487106017192, 0.8853868194842407, 0.2836676217765043, 0.22922636103151864, 0.20916905444126074, 0.1977077363896848, 0.18624641833810887, 0.18051575931232092, 0.18624641833810887, 0.1833810888252149, 0.2607449856733524, 0.21203438395415472, 0.20057306590257878, 0.20916905444126074, 0.22349570200573066, 0.9283667621776505, 0.9484240687679083, 0.8968481375358166, 0.36962750716332377, 0.27507163323782235, 0.2349570200573066, 0.18624641833810887, 0.17765042979942694, 0.17765042979942694, 0.19197707736389685, 0.17765042979942694, 0.16905444126074498, 0.15759312320916904, 0.1518624641833811, 0.15472779369627507, 0.1518624641833811, 0.1518624641833811, 0.1489971346704871, 0.1518624641833811, 0.1518624641833811, 0.8022922636103151, 0.1489971346704871, 0.1489971346704871, 0.1518624641833811, 0.1518624641833811, 0.15472779369627507, 0.15472779369627507, 0.9340974212034384, 0.9426934097421203, 0.9426934097421203, 0.9169054441260746, 0.1977077363896848, 0.18911174785100288, 0.18911174785100288, 0.19484240687679083, 0.1833810888252149, 0.16905444126074498, 0.18911174785100288, 0.6189111747851003, 0.5558739255014327, 0.7564469914040115, 0.8911174785100286, 0.9140401146131805, 0.9226361031518625, 0.9255014326647565, 0.9312320916905444, 0.9455587392550143, 0.9455587392550143, 0.9455587392550143, 0.9312320916905444, 0.9312320916905444, 0.9255014326647565, 0.9197707736389685, 0.9083094555873925, 0.7736389684813754, 0.7478510028653295, 0.27793696275071633, 0.16045845272206305, 0.16045845272206305, 0.1518624641833811, 0.1489971346704871, 0.1489971346704871, 0.1518624641833811, 0.16045845272206305, 0.1489971346704871, 0.14613180515759314, 0.1489971346704871, 0.14613180515759314, 0.14040114613180515, 0.14040114613180515, 0.14040114613180515, 0.14040114613180515, 0.14040114613180515, 0.14040114613180515, 0.14326647564469913, 0.14326647564469913, 0.14326647564469913, 0.14613180515759314, 0.1489971346704871, 0.14613180515759314, 0.1489971346704871, 0.14613180515759314, 0.8194842406876791, 0.8194842406876791, 0.14326647564469913, 0.14040114613180515, 0.14326647564469913, 0.14040114613180515, 0.14040114613180515, 0.14040114613180515, 0.14040114613180515, 0.14040114613180515, 0.14326647564469913, 0.14613180515759314, 0.1489971346704871, 0.1489971346704871, 0.49570200573065903, 0.4813753581661891, 0.4469914040114613, 0.4326647564469914, 0.2034383954154728, 0.22922636103151864, 0.5071633237822349, 0.4899713467048711, 0.47564469914040114, 0.4584527220630373, 0.4469914040114613, 0.41260744985673353, 0.9111747851002865, 0.9169054441260746, 0.9340974212034384, 0.9484240687679083, 0.9283667621776505, 0.9140401146131805, 0.8567335243553008, 0.2979942693409742, 0.16905444126074498, 0.16905444126074498, 0.16905444126074498, 0.166189111747851, 0.166189111747851, 0.166189111747851, 0.166189111747851, 0.16905444126074498, 0.16905444126074498, 0.16905444126074498, 0.2836676217765043, 0.7507163323782235, 0.2148997134670487, 0.2034383954154728, 0.2034383954154728, 0.21203438395415472, 0.2492836676217765, 0.18051575931232092, 0.6876790830945558, 0.7106017191977078, 0.7793696275071633, 0.8166189111747851, 0.8166189111747851, 0.8166189111747851, 0.8223495702005731, 0.8252148997134671, 0.8252148997134671, 0.8252148997134671, 0.8968481375358166, 0.9484240687679083, 0.9255014326647565, 0.839541547277937, 0.8252148997134671, 0.8252148997134671, 0.8252148997134671, 0.8166189111747851, 0.8166189111747851, 0.8166189111747851, 0.8137535816618912, 0.7650429799426934, 0.7077363896848138, 0.6876790830945558, 0.17478510028653296, 0.1833810888252149, 0.1833810888252149, 0.9025787965616046, 0.8452722063037249, 0.18051575931232092, 0.18051575931232092, 0.17478510028653296, 0.17478510028653296, 0.17765042979942694, 0.18624641833810887, 0.18624641833810887, 0.18911174785100288, 0.20057306590257878, 0.20057306590257878, 0.20916905444126074, 0.22922636103151864, 0.24068767908309455, 0.25501432664756446, 0.2607449856733524, 0.667621776504298, 0.6934097421203438, 0.7335243553008596, 0.7363896848137536, 0.7851002865329513, 0.7965616045845272, 0.9312320916905444, 0.9426934097421203, 0.8080229226361032, 0.7879656160458453, 0.7650429799426934, 0.7363896848137536, 0.7106017191977078, 0.670487106017192, 0.6561604584527221, 0.25787965616045844, 0.2664756446991404, 0.22922636103151864, 0.2177650429799427, 0.22922636103151864, 0.27793696275071633, 0.27793696275071633, 0.2922636103151863, 0.3037249283667622, 0.4326647564469914, 0.9255014326647565, 0.28653295128939826, 0.24068767908309455, 0.9255014326647565, 0.9426934097421203, 0.9255014326647565, 0.2034383954154728, 0.18911174785100288, 0.1833810888252149, 0.18051575931232092, 0.18051575931232092, 0.18051575931232092, 0.18051575931232092, 0.18051575931232092, 0.17765042979942694, 0.17765042979942694, 0.17765042979942694, 0.18051575931232092, 0.1833810888252149, 0.1833810888252149, 0.9054441260744985, 0.27507163323782235, 0.2664756446991404, 0.22063037249283668, 0.23782234957020057, 0.2693409742120344, 0.9111747851002865, 0.8739255014326648, 0.4269340974212034, 0.3467048710601719, 0.28653295128939826, 0.22922636103151864, 0.32951289398280803, 0.7621776504297995, 0.23209169054441262, 0.18624641833810887, 0.18624641833810887, 0.18624641833810887, 0.19197707736389685, 0.19197707736389685, 0.19197707736389685, 0.18911174785100288, 0.8223495702005731, 0.8223495702005731, 0.828080229226361, 0.833810888252149, 0.8624641833810889, 0.9025787965616046, 0.9226361031518625, 0.9484240687679083, 0.9340974212034384, 0.9197707736389685, 0.8767908309455588, 0.8538681948424068, 0.833810888252149, 0.8223495702005731, 0.8223495702005731, 0.8223495702005731, 0.25787965616045844, 0.7936962750716332, 0.8452722063037249, 0.6790830945558739, 0.5959885386819485, 0.5644699140401146, 0.4871060171919771, 0.20057306590257878, 0.20057306590257878, 0.20057306590257878, 0.1977077363896848, 0.19484240687679083, 0.19484240687679083, 0.1977077363896848, 0.1977077363896848, 0.19484240687679083, 0.19484240687679083, 0.1977077363896848, 0.1977077363896848, 0.20057306590257878, 0.20057306590257878, 0.20057306590257878, 0.20057306590257878, 0.20057306590257878, 0.20057306590257878, 0.20057306590257878, 0.44126074498567336, 0.5300859598853869, 0.6303724928366762, 0.7650429799426934, 0.8624641833810889, 0.9054441260744985, 0.9455587392550143, 0.8939828080229226, 0.7936962750716332, 0.7220630372492837, 0.5644699140401146, 0.5100286532951289, 0.42406876790830944, 0.23782234957020057, 0.4383954154727794, 0.33810888252148996, 0.2836676217765043, 0.8166189111747851, 0.27507163323782235, 0.2722063037249284, 0.2664756446991404, 0.2636103151862464, 0.2607449856733524, 0.2664756446991404, 0.2664756446991404, 0.2664756446991404, 0.2693409742120344, 0.2693409742120344, 0.27793696275071633, 0.29512893982808025, 0.2979942693409742, 0.3037249283667622, 0.3037249283667622, 0.30659025787965616, 0.3123209169054441, 0.30659025787965616, 0.3037249283667622, 0.30945558739255014, 0.3123209169054441, 0.31805157593123207, 0.3151862464183381, 0.3237822349570201, 0.32664756446991405, 0.332378223495702, 0.33810888252148996, 0.6074498567335244, 0.5931232091690545, 0.5702005730659025, 0.4068767908309456, 0.41260744985673353, 0.4183381088825215, 0.4297994269340974, 0.9111747851002865, 0.9340974212034384, 0.9283667621776505, 0.9054441260744985, 0.4785100286532951, 0.5100286532951289, 0.49570200573065903, 0.49283667621776506, 0.4899713467048711, 0.48424068767908307, 0.4813753581661891, 0.48424068767908307, 0.4899713467048711, 0.49570200573065903, 0.5071633237822349, 0.5214899713467048, 0.5358166189111748, 0.5300859598853869, 0.8194842406876791, 0.9083094555873925, 0.9455587392550143, 0.9340974212034384, 0.8739255014326648, 0.7965616045845272, 0.7163323782234957, 0.670487106017192, 0.6303724928366762, 0.6045845272206304, 0.5931232091690545, 0.5816618911174785, 0.5816618911174785, 0.5759312320916905, 0.5816618911174785, 0.5845272206303725, 0.5959885386819485, 0.5959885386819485, 0.5988538681948424, 0.6074498567335244, 0.6131805157593123, 0.6131805157593123, 0.6189111747851003, 0.6246418338108882, 0.6332378223495702, 0.6418338108882522, 0.6475644699140402, 0.6475644699140402, 0.6504297994269341, 0.6561604584527221, 0.667621776504298, 0.6819484240687679, 0.6876790830945558, 0.6934097421203438, 0.7048710601719198, 0.7134670487106017, 0.7249283667621776, 0.7507163323782235, 0.7593123209169055, 0.7707736389684814, 0.7793696275071633, 0.7908309455587392, 0.8051575931232091, 0.8223495702005731, 0.839541547277937, 0.8681948424068768, 0.8796561604584527, 0.8939828080229226, 0.9197707736389685], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Palm_thioest.gap.json b/pfam_gap_rates/Palm_thioest.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..183eab85977e6305fea7f95162b1afc8af912759
--- /dev/null
+++ b/pfam_gap_rates/Palm_thioest.gap.json
@@ -0,0 +1 @@
+{"family": "Palm_thioest", "n_seqs": 485, "length": 289, "gap_rates": [0.9443298969072165, 0.8948453608247423, 0.6804123711340206, 0.6309278350515464, 0.47216494845360824, 0.422680412371134, 0.42061855670103093, 0.41855670103092785, 0.41237113402061853, 0.41030927835051545, 0.4041237113402062, 0.4041237113402062, 0.38144329896907214, 0.3835051546391753, 0.37938144329896906, 0.38556701030927837, 0.4041237113402062, 0.4515463917525773, 0.4350515463917526, 0.44123711340206184, 0.4762886597938144, 0.41237113402061853, 0.34845360824742266, 0.35051546391752575, 0.3443298969072165, 0.3402061855670103, 0.3443298969072165, 0.3402061855670103, 0.334020618556701, 0.3463917525773196, 0.354639175257732, 0.3402061855670103, 0.334020618556701, 0.3319587628865979, 0.3443298969072165, 0.32783505154639175, 0.3134020618556701, 0.3154639175257732, 0.3154639175257732, 0.31752577319587627, 0.30927835051546393, 0.30515463917525776, 0.30721649484536084, 0.30721649484536084, 0.30927835051546393, 0.30721649484536084, 0.3216494845360825, 0.35876288659793815, 0.38556701030927837, 0.4288659793814433, 0.43711340206185567, 0.4, 0.36907216494845363, 0.30927835051546393, 0.2804123711340206, 0.27010309278350514, 0.26597938144329897, 0.2639175257731959, 0.2536082474226804, 0.24742268041237114, 0.24742268041237114, 0.23917525773195877, 0.2329896907216495, 0.2329896907216495, 0.22268041237113403, 0.22268041237113403, 0.21855670103092784, 0.22268041237113403, 0.22061855670103092, 0.21649484536082475, 0.21443298969072164, 0.21237113402061855, 0.21855670103092784, 0.21855670103092784, 0.21237113402061855, 0.22061855670103092, 0.20618556701030927, 0.18762886597938144, 0.15051546391752577, 0.8865979381443299, 0.8865979381443299, 0.1463917525773196, 0.14845360824742268, 0.14845360824742268, 0.14845360824742268, 0.15051546391752577, 0.15051546391752577, 0.15257731958762888, 0.15257731958762888, 0.15257731958762888, 0.15463917525773196, 0.15257731958762888, 0.15257731958762888, 0.15257731958762888, 0.15257731958762888, 0.15670103092783505, 0.15463917525773196, 0.15876288659793814, 0.16082474226804125, 0.16082474226804125, 0.16082474226804125, 0.16082474226804125, 0.16288659793814433, 0.8494845360824742, 0.16907216494845362, 0.1711340206185567, 0.16288659793814433, 0.15876288659793814, 0.15670103092783505, 0.15257731958762888, 0.15051546391752577, 0.15051546391752577, 0.15051546391752577, 0.15051546391752577, 0.15051546391752577, 0.14845360824742268, 0.14845360824742268, 0.14845360824742268, 0.14845360824742268, 0.14432989690721648, 0.14845360824742268, 0.14845360824742268, 0.16288659793814433, 0.17525773195876287, 0.177319587628866, 0.17525773195876287, 0.17938144329896907, 0.26597938144329897, 0.3958762886597938, 0.44329896907216493, 0.2845360824742268, 0.25773195876288657, 0.20824742268041238, 0.18144329896907216, 0.16907216494845362, 0.1731958762886598, 0.16494845360824742, 0.16907216494845362, 0.1670103092783505, 0.16907216494845362, 0.16494845360824742, 0.16288659793814433, 0.16907216494845362, 0.1670103092783505, 0.16907216494845362, 0.15670103092783505, 0.15670103092783505, 0.15876288659793814, 0.1670103092783505, 0.16288659793814433, 0.1670103092783505, 0.1670103092783505, 0.18556701030927836, 0.18762886597938144, 0.17525773195876287, 0.16494845360824742, 0.20618556701030927, 0.15051546391752577, 0.14845360824742268, 0.14845360824742268, 0.14845360824742268, 0.14845360824742268, 0.14845360824742268, 0.14432989690721648, 0.14432989690721648, 0.14845360824742268, 0.14845360824742268, 0.14845360824742268, 0.15051546391752577, 0.1422680412371134, 0.1402061855670103, 0.1402061855670103, 0.13814432989690723, 0.14432989690721648, 0.1422680412371134, 0.1360824742268041, 0.1360824742268041, 0.1360824742268041, 0.13814432989690723, 0.13402061855670103, 0.13402061855670103, 0.13814432989690723, 0.13402061855670103, 0.9381443298969072, 0.9278350515463918, 0.13814432989690723, 0.9402061855670103, 0.9154639175257732, 0.14432989690721648, 0.9030927835051547, 0.8412371134020619, 0.13814432989690723, 0.9195876288659793, 0.7917525773195876, 0.13195876288659794, 0.13195876288659794, 0.1360824742268041, 0.13402061855670103, 0.1360824742268041, 0.13402061855670103, 0.13402061855670103, 0.13402061855670103, 0.12989690721649486, 0.12989690721649486, 0.12989690721649486, 0.12989690721649486, 0.12989690721649486, 0.12989690721649486, 0.12783505154639174, 0.12577319587628866, 0.12783505154639174, 0.12577319587628866, 0.12577319587628866, 0.12577319587628866, 0.12371134020618557, 0.12371134020618557, 0.12371134020618557, 0.12783505154639174, 0.12783505154639174, 0.12783505154639174, 0.12783505154639174, 0.12783505154639174, 0.12577319587628866, 0.12783505154639174, 0.12577319587628866, 0.12783505154639174, 0.12783505154639174, 0.13402061855670103, 0.1402061855670103, 0.18144329896907216, 0.21443298969072164, 0.24123711340206186, 0.2721649484536082, 0.2618556701030928, 0.24742268041237114, 0.21443298969072164, 0.18144329896907216, 0.1670103092783505, 0.16494845360824742, 0.16494845360824742, 0.16288659793814433, 0.16082474226804125, 0.15876288659793814, 0.16082474226804125, 0.15876288659793814, 0.15876288659793814, 0.16288659793814433, 0.1670103092783505, 0.1711340206185567, 0.1711340206185567, 0.1731958762886598, 0.1670103092783505, 0.1670103092783505, 0.1670103092783505, 0.16494845360824742, 0.1711340206185567, 0.1711340206185567, 0.1711340206185567, 0.17525773195876287, 0.17525773195876287, 0.1731958762886598, 0.1731958762886598, 0.17525773195876287, 0.18144329896907216, 0.2020618556701031, 0.21649484536082475, 0.2309278350515464, 0.24329896907216494, 0.24536082474226803, 0.24742268041237114, 0.2618556701030928, 0.26804123711340205, 0.27835051546391754, 0.2865979381443299, 0.29896907216494845, 0.29896907216494845, 0.31752577319587627, 0.32989690721649484, 0.3649484536082474, 0.41855670103092785, 0.47010309278350515, 0.4845360824742268, 0.5195876288659794, 0.5381443298969072, 0.5525773195876289, 0.6020618556701031, 0.6474226804123712, 0.6721649484536083, 0.9010309278350516], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Pam17.gap.json b/pfam_gap_rates/Pam17.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..fe34e9b38381dd67c023c6f20014de6814f56271
--- /dev/null
+++ b/pfam_gap_rates/Pam17.gap.json
@@ -0,0 +1 @@
+{"family": "Pam17", "n_seqs": 140, "length": 165, "gap_rates": [0.9428571428571428, 0.7928571428571428, 0.6857142857142857, 0.5642857142857143, 0.4785714285714286, 0.40714285714285714, 0.32142857142857145, 0.29285714285714287, 0.2357142857142857, 0.19285714285714287, 0.15, 0.12142857142857143, 0.1, 0.09285714285714286, 0.07857142857142857, 0.07142857142857142, 0.07142857142857142, 0.04285714285714286, 0.04285714285714286, 0.04285714285714286, 0.04285714285714286, 0.04285714285714286, 0.04285714285714286, 0.03571428571428571, 0.03571428571428571, 0.03571428571428571, 0.03571428571428571, 0.03571428571428571, 0.03571428571428571, 0.03571428571428571, 0.03571428571428571, 0.03571428571428571, 0.03571428571428571, 0.03571428571428571, 0.03571428571428571, 0.03571428571428571, 0.03571428571428571, 0.02857142857142857, 0.02857142857142857, 0.02857142857142857, 0.02857142857142857, 0.02857142857142857, 0.02857142857142857, 0.02142857142857143, 0.02142857142857143, 0.02142857142857143, 0.02142857142857143, 0.02142857142857143, 0.02142857142857143, 0.02142857142857143, 0.02142857142857143, 0.02142857142857143, 0.02142857142857143, 0.02142857142857143, 0.02142857142857143, 0.05, 0.03571428571428571, 0.02857142857142857, 0.03571428571428571, 0.02142857142857143, 0.6428571428571429, 0.02142857142857143, 0.02857142857142857, 0.02142857142857143, 0.02142857142857143, 0.22857142857142856, 0.02142857142857143, 0.02142857142857143, 0.02142857142857143, 0.02142857142857143, 0.02142857142857143, 0.02142857142857143, 0.02142857142857143, 0.02142857142857143, 0.02857142857142857, 0.02857142857142857, 0.02142857142857143, 0.02142857142857143, 0.02142857142857143, 0.02142857142857143, 0.02857142857142857, 0.03571428571428571, 0.03571428571428571, 0.02857142857142857, 0.02857142857142857, 0.02857142857142857, 0.02857142857142857, 0.02857142857142857, 0.02857142857142857, 0.02857142857142857, 0.02857142857142857, 0.02857142857142857, 0.02857142857142857, 0.02857142857142857, 0.02857142857142857, 0.02857142857142857, 0.02857142857142857, 0.02857142857142857, 0.02857142857142857, 0.02857142857142857, 0.9357142857142857, 0.03571428571428571, 0.02857142857142857, 0.02857142857142857, 0.03571428571428571, 0.03571428571428571, 0.03571428571428571, 0.03571428571428571, 0.03571428571428571, 0.03571428571428571, 0.03571428571428571, 0.03571428571428571, 0.03571428571428571, 0.03571428571428571, 0.04285714285714286, 0.04285714285714286, 0.04285714285714286, 0.04285714285714286, 0.04285714285714286, 0.04285714285714286, 0.04285714285714286, 0.03571428571428571, 0.03571428571428571, 0.03571428571428571, 0.03571428571428571, 0.06428571428571428, 0.05714285714285714, 0.05, 0.04285714285714286, 0.03571428571428571, 0.04285714285714286, 0.04285714285714286, 0.04285714285714286, 0.04285714285714286, 0.05714285714285714, 0.05714285714285714, 0.05714285714285714, 0.05, 0.05, 0.05, 0.05, 0.05, 0.05, 0.05, 0.05, 0.05, 0.05, 0.05, 0.05, 0.05714285714285714, 0.05714285714285714, 0.05714285714285714, 0.05714285714285714, 0.05714285714285714, 0.05714285714285714, 0.05714285714285714, 0.05714285714285714, 0.05714285714285714, 0.05714285714285714, 0.06428571428571428, 0.06428571428571428, 0.06428571428571428, 0.08571428571428572, 0.16428571428571428, 0.45], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PapC_N.gap.json b/pfam_gap_rates/PapC_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d8c92d31da6d2f661cfc46cc853b50b4709b6285
--- /dev/null
+++ b/pfam_gap_rates/PapC_N.gap.json
@@ -0,0 +1 @@
+{"family": "PapC_N", "n_seqs": 161, "length": 166, "gap_rates": [0.35403726708074534, 0.10559006211180125, 0.09937888198757763, 0.09937888198757763, 0.09316770186335403, 0.09316770186335403, 0.09316770186335403, 0.09316770186335403, 0.09937888198757763, 0.32298136645962733, 0.9192546583850931, 0.8198757763975155, 0.15527950310559005, 0.12422360248447205, 0.09316770186335403, 0.09316770186335403, 0.09316770186335403, 0.09316770186335403, 0.08074534161490683, 0.07453416149068323, 0.07453416149068323, 0.07453416149068323, 0.07453416149068323, 0.07453416149068323, 0.12422360248447205, 0.062111801242236024, 0.049689440993788817, 0.055900621118012424, 0.049689440993788817, 0.049689440993788817, 0.049689440993788817, 0.049689440993788817, 0.049689440993788817, 0.049689440993788817, 0.049689440993788817, 0.049689440993788817, 0.049689440993788817, 0.049689440993788817, 0.049689440993788817, 0.049689440993788817, 0.049689440993788817, 0.049689440993788817, 0.049689440993788817, 0.049689440993788817, 0.043478260869565216, 0.043478260869565216, 0.043478260869565216, 0.9006211180124224, 0.043478260869565216, 0.043478260869565216, 0.043478260869565216, 0.9440993788819876, 0.043478260869565216, 0.08695652173913043, 0.08695652173913043, 0.2360248447204969, 0.42857142857142855, 0.8571428571428571, 0.9254658385093167, 0.9440993788819876, 0.8881987577639752, 0.8012422360248447, 0.11180124223602485, 0.08695652173913043, 0.062111801242236024, 0.055900621118012424, 0.055900621118012424, 0.055900621118012424, 0.055900621118012424, 0.055900621118012424, 0.049689440993788817, 0.049689440993788817, 0.049689440993788817, 0.049689440993788817, 0.049689440993788817, 0.049689440993788817, 0.049689440993788817, 0.049689440993788817, 0.049689440993788817, 0.049689440993788817, 0.043478260869565216, 0.043478260869565216, 0.8944099378881988, 0.9192546583850931, 0.8881987577639752, 0.11180124223602485, 0.13664596273291926, 0.12422360248447205, 0.07453416149068323, 0.055900621118012424, 0.049689440993788817, 0.049689440993788817, 0.049689440993788817, 0.062111801242236024, 0.10559006211180125, 0.14285714285714285, 0.2857142857142857, 0.30434782608695654, 0.8074534161490683, 0.8633540372670807, 0.9192546583850931, 0.9440993788819876, 0.9316770186335404, 0.8944099378881988, 0.8260869565217391, 0.7142857142857143, 0.13043478260869565, 0.055900621118012424, 0.043478260869565216, 0.043478260869565216, 0.049689440993788817, 0.043478260869565216, 0.06832298136645963, 0.32298136645962733, 0.062111801242236024, 0.049689440993788817, 0.055900621118012424, 0.055900621118012424, 0.055900621118012424, 0.055900621118012424, 0.055900621118012424, 0.062111801242236024, 0.07453416149068323, 0.07453416149068323, 0.06832298136645963, 0.06832298136645963, 0.062111801242236024, 0.062111801242236024, 0.055900621118012424, 0.055900621118012424, 0.055900621118012424, 0.055900621118012424, 0.055900621118012424, 0.055900621118012424, 0.055900621118012424, 0.055900621118012424, 0.055900621118012424, 0.055900621118012424, 0.055900621118012424, 0.12422360248447205, 0.11180124223602485, 0.09937888198757763, 0.08695652173913043, 0.07453416149068323, 0.08074534161490683, 0.08695652173913043, 0.08074534161490683, 0.08074534161490683, 0.06832298136645963, 0.06832298136645963, 0.06832298136645963, 0.06832298136645963, 0.06832298136645963, 0.06832298136645963, 0.06832298136645963, 0.06832298136645963, 0.06832298136645963, 0.06832298136645963, 0.06832298136645963, 0.07453416149068323, 0.07453416149068323, 0.07453416149068323, 0.07453416149068323, 0.09316770186335403, 0.17391304347826086, 0.6273291925465838], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/ParE_toxin.gap.json b/pfam_gap_rates/ParE_toxin.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..7bb3968eac8a3728e7f913bc9398decaab8aed16
--- /dev/null
+++ b/pfam_gap_rates/ParE_toxin.gap.json
@@ -0,0 +1 @@
+{"family": "ParE_toxin", "n_seqs": 2752, "length": 103, "gap_rates": [0.4171511627906977, 0.2612645348837209, 0.18313953488372092, 0.15734011627906977, 0.13662790697674418, 0.12390988372093023, 0.1159156976744186, 0.1119186046511628, 0.10501453488372094, 0.1002906976744186, 0.09593023255813954, 0.09156976744186046, 0.08866279069767442, 0.08611918604651163, 0.11119186046511628, 0.14534883720930233, 0.1973110465116279, 0.22093023255813954, 0.4022529069767442, 0.606468023255814, 0.39934593023255816, 0.3960755813953488, 0.39934593023255816, 0.8993459302325582, 0.3851744186046512, 0.4727470930232558, 0.3691860465116279, 0.13408430232558138, 0.09920058139534883, 0.05995639534883721, 0.05050872093023256, 0.03888081395348837, 0.03306686046511628, 0.030523255813953487, 0.02688953488372093, 0.046511627906976744, 0.04578488372093023, 0.05159883720930233, 0.041061046511627904, 0.03343023255813953, 0.023982558139534885, 0.020348837209302327, 0.01744186046511628, 0.02688953488372093, 0.020348837209302327, 0.015988372093023256, 0.013808139534883721, 0.014898255813953489, 0.015988372093023256, 0.018531976744186048, 0.018168604651162792, 0.9280523255813954, 0.8412063953488372, 0.3390261627906977, 0.32703488372093026, 0.3179505813953488, 0.28488372093023256, 0.08212209302325581, 0.6602470930232558, 0.924781976744186, 0.8088662790697675, 0.5806686046511628, 0.04905523255813953, 0.2394622093023256, 0.03488372093023256, 0.029069767441860465, 0.019622093023255814, 0.018531976744186048, 0.024709302325581394, 0.03924418604651163, 0.019622093023255814, 0.012354651162790697, 0.8077761627906976, 0.9494912790697675, 0.7449127906976745, 0.012718023255813954, 0.012354651162790697, 0.01308139534883721, 0.01308139534883721, 0.013444767441860465, 0.014898255813953489, 0.014898255813953489, 0.048328488372093026, 0.9414970930232558, 0.12718023255813954, 0.35065406976744184, 0.06577034883720931, 0.07340116279069768, 0.029069767441860465, 0.025436046511627907, 0.025799418604651164, 0.5181686046511628, 0.030159883720930234, 0.03561046511627907, 0.03997093023255814, 0.04251453488372093, 0.05559593023255814, 0.07921511627906977, 0.0912063953488372, 0.12136627906976744, 0.17296511627906977, 0.2754360465116279, 0.6006540697674418], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PcfJ.gap.json b/pfam_gap_rates/PcfJ.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d067e9cef4fb842db7bc48cab3006c5274bcb6dc
--- /dev/null
+++ b/pfam_gap_rates/PcfJ.gap.json
@@ -0,0 +1 @@
+{"family": "PcfJ", "n_seqs": 196, "length": 182, "gap_rates": [0.6326530612244898, 0.336734693877551, 0.3112244897959184, 0.29591836734693877, 0.29081632653061223, 0.2857142857142857, 0.28061224489795916, 0.28061224489795916, 0.29081632653061223, 0.29081632653061223, 0.2857142857142857, 0.28061224489795916, 0.2755102040816326, 0.2755102040816326, 0.2755102040816326, 0.29591836734693877, 0.28061224489795916, 0.29591836734693877, 0.336734693877551, 0.29081632653061223, 0.28061224489795916, 0.28061224489795916, 0.28061224489795916, 0.2755102040816326, 0.25510204081632654, 0.25, 0.25, 0.23979591836734693, 0.23469387755102042, 0.22959183673469388, 0.22448979591836735, 0.2193877551020408, 0.7448979591836735, 0.8877551020408163, 0.8928571428571429, 0.9438775510204082, 0.9438775510204082, 0.9336734693877551, 0.8928571428571429, 0.7602040816326531, 0.7397959183673469, 0.23469387755102042, 0.23469387755102042, 0.23469387755102042, 0.22959183673469388, 0.23979591836734693, 0.22448979591836735, 0.21428571428571427, 0.21428571428571427, 0.20918367346938777, 0.20918367346938777, 0.20408163265306123, 0.1989795918367347, 0.18877551020408162, 0.18877551020408162, 0.18877551020408162, 0.19387755102040816, 0.20918367346938777, 0.2602040816326531, 0.9030612244897959, 0.7908163265306123, 0.2653061224489796, 0.19387755102040816, 0.3877551020408163, 0.45408163265306123, 0.5051020408163265, 0.5459183673469388, 0.5969387755102041, 0.6122448979591837, 0.7244897959183674, 0.7908163265306123, 0.9387755102040817, 0.9438775510204082, 0.9438775510204082, 0.9438775510204082, 0.9438775510204082, 0.9387755102040817, 0.9336734693877551, 0.7346938775510204, 0.6479591836734694, 0.6071428571428571, 0.5816326530612245, 0.5306122448979592, 0.4744897959183674, 0.40816326530612246, 0.3826530612244898, 0.19387755102040816, 0.1683673469387755, 0.15816326530612246, 0.14795918367346939, 0.12755102040816327, 0.10714285714285714, 0.09693877551020408, 0.07653061224489796, 0.07653061224489796, 0.07653061224489796, 0.08163265306122448, 0.03571428571428571, 0.03571428571428571, 0.030612244897959183, 0.030612244897959183, 0.030612244897959183, 0.030612244897959183, 0.030612244897959183, 0.030612244897959183, 0.030612244897959183, 0.030612244897959183, 0.030612244897959183, 0.030612244897959183, 0.030612244897959183, 0.030612244897959183, 0.030612244897959183, 0.03571428571428571, 0.01020408163265306, 0.01020408163265306, 0.02040816326530612, 0.025510204081632654, 0.025510204081632654, 0.025510204081632654, 0.025510204081632654, 0.6020408163265306, 0.7040816326530612, 0.5663265306122449, 0.025510204081632654, 0.025510204081632654, 0.025510204081632654, 0.025510204081632654, 0.025510204081632654, 0.025510204081632654, 0.29591836734693877, 0.29591836734693877, 0.27040816326530615, 0.33163265306122447, 0.3112244897959184, 0.30612244897959184, 0.025510204081632654, 0.025510204081632654, 0.025510204081632654, 0.025510204081632654, 0.025510204081632654, 0.4744897959183674, 0.20918367346938777, 0.1836734693877551, 0.04081632653061224, 0.03571428571428571, 0.04081632653061224, 0.04591836734693878, 0.04081632653061224, 0.04081632653061224, 0.9336734693877551, 0.03571428571428571, 0.03571428571428571, 0.03571428571428571, 0.03571428571428571, 0.03571428571428571, 0.04081632653061224, 0.061224489795918366, 0.27040816326530615, 0.3826530612244898, 0.9183673469387755, 0.04081632653061224, 0.04081632653061224, 0.04081632653061224, 0.04591836734693878, 0.04591836734693878, 0.04591836734693878, 0.04591836734693878, 0.04591836734693878, 0.05102040816326531, 0.05102040816326531, 0.22448979591836735, 0.11734693877551021, 0.12244897959183673, 0.5816326530612245, 0.5357142857142857, 0.3010204081632653, 0.3622448979591837, 0.413265306122449, 0.45408163265306123, 0.5255102040816326, 0.5918367346938775, 0.7448979591836735], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Pec_lyase.gap.json b/pfam_gap_rates/Pec_lyase.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..13bcb61321ffbb26f0a0ba1f5b0dd7a202f4f342
--- /dev/null
+++ b/pfam_gap_rates/Pec_lyase.gap.json
@@ -0,0 +1 @@
+{"family": "Pec_lyase", "n_seqs": 133, "length": 340, "gap_rates": [0.37593984962406013, 0.37593984962406013, 0.37593984962406013, 0.37593984962406013, 0.37593984962406013, 0.37593984962406013, 0.3684210526315789, 0.3684210526315789, 0.3684210526315789, 0.3684210526315789, 0.7894736842105263, 0.8646616541353384, 0.9097744360902256, 0.9398496240601504, 0.9398496240601504, 0.9398496240601504, 0.9398496240601504, 0.924812030075188, 0.8796992481203008, 0.8421052631578947, 0.7669172932330827, 0.3684210526315789, 0.3684210526315789, 0.3684210526315789, 0.38345864661654133, 0.38345864661654133, 0.3684210526315789, 0.3684210526315789, 0.37593984962406013, 0.3684210526315789, 0.3609022556390977, 0.3533834586466165, 0.3609022556390977, 0.37593984962406013, 0.39849624060150374, 0.43609022556390975, 0.45112781954887216, 0.39097744360902253, 0.3533834586466165, 0.3082706766917293, 0.3082706766917293, 0.2706766917293233, 0.21804511278195488, 0.706766917293233, 0.13533834586466165, 0.13533834586466165, 0.13533834586466165, 0.13533834586466165, 0.13533834586466165, 0.13533834586466165, 0.13533834586466165, 0.14285714285714285, 0.12781954887218044, 0.12781954887218044, 0.12781954887218044, 0.12030075187969924, 0.11278195488721804, 0.10526315789473684, 0.09774436090225563, 0.09774436090225563, 0.09774436090225563, 0.09774436090225563, 0.09022556390977443, 0.09022556390977443, 0.09022556390977443, 0.09022556390977443, 0.9473684210526315, 0.9398496240601504, 0.09022556390977443, 0.09022556390977443, 0.09022556390977443, 0.09022556390977443, 0.09022556390977443, 0.09022556390977443, 0.09022556390977443, 0.09022556390977443, 0.09022556390977443, 0.09022556390977443, 0.09022556390977443, 0.09022556390977443, 0.09022556390977443, 0.09022556390977443, 0.09022556390977443, 0.09022556390977443, 0.09022556390977443, 0.09022556390977443, 0.09022556390977443, 0.08270676691729323, 0.08270676691729323, 0.08270676691729323, 0.09022556390977443, 0.09022556390977443, 0.09774436090225563, 0.09022556390977443, 0.09022556390977443, 0.09022556390977443, 0.09774436090225563, 0.09774436090225563, 0.12030075187969924, 0.13533834586466165, 0.14285714285714285, 0.13533834586466165, 0.12781954887218044, 0.12781954887218044, 0.7819548872180451, 0.849624060150376, 0.8646616541353384, 0.8872180451127819, 0.9398496240601504, 0.9398496240601504, 0.9398496240601504, 0.9398496240601504, 0.9398496240601504, 0.9398496240601504, 0.9398496240601504, 0.9473684210526315, 0.9398496240601504, 0.9398496240601504, 0.9398496240601504, 0.9398496240601504, 0.9398496240601504, 0.9398496240601504, 0.9323308270676691, 0.8721804511278195, 0.8646616541353384, 0.8345864661654135, 0.7669172932330827, 0.13533834586466165, 0.13533834586466165, 0.13533834586466165, 0.13533834586466165, 0.13533834586466165, 0.13533834586466165, 0.13533834586466165, 0.13533834586466165, 0.14285714285714285, 0.14285714285714285, 0.14285714285714285, 0.13533834586466165, 0.13533834586466165, 0.13533834586466165, 0.13533834586466165, 0.13533834586466165, 0.13533834586466165, 0.13533834586466165, 0.13533834586466165, 0.12781954887218044, 0.12781954887218044, 0.12781954887218044, 0.12781954887218044, 0.13533834586466165, 0.14285714285714285, 0.15037593984962405, 0.17293233082706766, 0.2631578947368421, 0.2631578947368421, 0.2556390977443609, 0.8120300751879699, 0.7744360902255639, 0.2781954887218045, 0.2781954887218045, 0.2706766917293233, 0.2631578947368421, 0.2556390977443609, 0.23308270676691728, 0.17293233082706766, 0.15037593984962405, 0.14285714285714285, 0.13533834586466165, 0.14285714285714285, 0.12781954887218044, 0.12781954887218044, 0.12030075187969924, 0.12781954887218044, 0.12030075187969924, 0.12781954887218044, 0.12781954887218044, 0.12781954887218044, 0.13533834586466165, 0.12781954887218044, 0.12030075187969924, 0.12030075187969924, 0.12030075187969924, 0.13533834586466165, 0.18045112781954886, 0.17293233082706766, 0.15037593984962405, 0.18796992481203006, 0.20300751879699247, 0.16541353383458646, 0.12030075187969924, 0.09774436090225563, 0.09774436090225563, 0.09774436090225563, 0.10526315789473684, 0.10526315789473684, 0.10526315789473684, 0.10526315789473684, 0.12030075187969924, 0.13533834586466165, 0.16541353383458646, 0.13533834586466165, 0.11278195488721804, 0.10526315789473684, 0.11278195488721804, 0.11278195488721804, 0.11278195488721804, 0.11278195488721804, 0.11278195488721804, 0.11278195488721804, 0.11278195488721804, 0.11278195488721804, 0.11278195488721804, 0.11278195488721804, 0.11278195488721804, 0.10526315789473684, 0.10526315789473684, 0.10526315789473684, 0.10526315789473684, 0.10526315789473684, 0.10526315789473684, 0.10526315789473684, 0.10526315789473684, 0.10526315789473684, 0.10526315789473684, 0.11278195488721804, 0.11278195488721804, 0.11278195488721804, 0.11278195488721804, 0.12781954887218044, 0.12781954887218044, 0.13533834586466165, 0.9473684210526315, 0.9473684210526315, 0.2556390977443609, 0.14285714285714285, 0.14285714285714285, 0.14285714285714285, 0.14285714285714285, 0.14285714285714285, 0.14285714285714285, 0.14285714285714285, 0.14285714285714285, 0.14285714285714285, 0.14285714285714285, 0.14285714285714285, 0.14285714285714285, 0.15037593984962405, 0.14285714285714285, 0.14285714285714285, 0.14285714285714285, 0.15037593984962405, 0.9473684210526315, 0.9473684210526315, 0.15789473684210525, 0.17293233082706766, 0.18796992481203006, 0.18796992481203006, 0.20300751879699247, 0.20300751879699247, 0.22556390977443608, 0.23308270676691728, 0.23308270676691728, 0.23308270676691728, 0.24060150375939848, 0.2556390977443609, 0.2556390977443609, 0.2556390977443609, 0.3609022556390977, 0.3684210526315789, 0.37593984962406013, 0.45112781954887216, 0.7368421052631579, 0.924812030075188, 0.9323308270676691, 0.9398496240601504, 0.9398496240601504, 0.9323308270676691, 0.8571428571428571, 0.5789473684210527, 0.5263157894736842, 0.49624060150375937, 0.3533834586466165, 0.3533834586466165, 0.3383458646616541, 0.3308270676691729, 0.3458646616541353, 0.3082706766917293, 0.3082706766917293, 0.2857142857142857, 0.2857142857142857, 0.3157894736842105, 0.2857142857142857, 0.2781954887218045, 0.2706766917293233, 0.2631578947368421, 0.2631578947368421, 0.2631578947368421, 0.2631578947368421, 0.2631578947368421, 0.2631578947368421, 0.2706766917293233, 0.2706766917293233, 0.2781954887218045, 0.2781954887218045, 0.2781954887218045, 0.2781954887218045, 0.2781954887218045, 0.2781954887218045, 0.2781954887218045, 0.2781954887218045, 0.2781954887218045, 0.2932330827067669, 0.3157894736842105, 0.3157894736842105, 0.3233082706766917, 0.3233082706766917, 0.3233082706766917, 0.3233082706766917, 0.3233082706766917, 0.3233082706766917, 0.3233082706766917, 0.3308270676691729, 0.3233082706766917, 0.3233082706766917, 0.3233082706766917, 0.3233082706766917, 0.3233082706766917, 0.3233082706766917, 0.3233082706766917, 0.3233082706766917, 0.3233082706766917, 0.3233082706766917, 0.3233082706766917, 0.3233082706766917, 0.3458646616541353, 0.3609022556390977, 0.38345864661654133, 0.41353383458646614, 0.706766917293233], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Pec_lyase_N.gap.json b/pfam_gap_rates/Pec_lyase_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..802fa2399c164c544c1b9cacff4bf138d29aa2ad
--- /dev/null
+++ b/pfam_gap_rates/Pec_lyase_N.gap.json
@@ -0,0 +1 @@
+{"family": "Pec_lyase_N", "n_seqs": 102, "length": 67, "gap_rates": [0.3431372549019608, 0.17647058823529413, 0.16666666666666666, 0.10784313725490197, 0.058823529411764705, 0.0392156862745098, 0.0392156862745098, 0.0196078431372549, 0.0196078431372549, 0.0196078431372549, 0.0196078431372549, 0.0196078431372549, 0.00980392156862745, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.00980392156862745, 0.00980392156862745, 0.00980392156862745, 0.9411764705882353, 0.058823529411764705, 0.0784313725490196, 0.10784313725490197, 0.16666666666666666, 0.1568627450980392, 0.7843137254901961, 0.8235294117647058, 0.9117647058823529, 0.9117647058823529, 0.9117647058823529, 0.9117647058823529, 0.9117647058823529, 0.8725490196078431, 0.803921568627451, 0.7843137254901961, 0.7156862745098039, 0.696078431372549, 0.6274509803921569, 0.17647058823529413, 0.1568627450980392, 0.14705882352941177, 0.14705882352941177, 0.14705882352941177, 0.17647058823529413, 0.21568627450980393], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Pectinesterase.gap.json b/pfam_gap_rates/Pectinesterase.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a1dfb09a90472a1f92091a4c9b9ce24cb37e789e
--- /dev/null
+++ b/pfam_gap_rates/Pectinesterase.gap.json
@@ -0,0 +1 @@
+{"family": "Pectinesterase", "n_seqs": 2242, "length": 312, "gap_rates": [0.7105263157894737, 0.49553969669937553, 0.4085637823371989, 0.37154326494201606, 0.3626226583407672, 0.34656556645851916, 0.3264942016057092, 0.29348795718108833, 0.27163247100802856, 0.24442462087421946, 0.23639607493309545, 0.2328278322925959, 0.23059768064228367, 0.22702943800178413, 0.22524531668153436, 0.22346119536128456, 0.2216770740410348, 0.22033898305084745, 0.21989295272078502, 0.21900089206066012, 0.21900089206066012, 0.21855486173059768, 0.21810883140053525, 0.23862622658340768, 0.24665477252453166, 0.243978590544157, 0.23951828724353255, 0.23461195361284568, 0.23996431757359502, 0.9495985727029438, 0.22212310437109722, 0.21721677074041035, 0.21052631578947367, 0.20829616413916147, 0.20829616413916147, 0.20785013380909903, 0.20606601248884923, 0.2047279214986619, 0.2047279214986619, 0.2056199821587868, 0.2033898305084746, 0.20026761819803746, 0.20071364852809992, 0.2016057091882248, 0.2024977698483497, 0.2047279214986619, 0.2065120428189117, 0.2056199821587868, 0.2836752899197145, 0.2752007136485281, 0.2065120428189117, 0.19937555753791258, 0.19892952720785012, 0.19714540588760035, 0.19402319357716324, 0.19179304192685104, 0.19134701159678857, 0.19090098126672614, 0.19223907225691347, 0.19313113291703835, 0.19090098126672614, 0.1873327386262266, 0.1855486173059768, 0.18465655664585193, 0.18465655664585193, 0.18510258697591436, 0.18777876895628903, 0.9094558429973238, 0.19536128456735058, 0.2711864406779661, 0.23907225691347012, 0.2310437109723461, 0.22658340767172166, 0.20115967885816236, 0.19714540588760035, 0.19848349687778769, 0.8920606601248885, 0.8073148974130241, 0.19090098126672614, 0.18777876895628903, 0.18376449598572703, 0.1784121320249777, 0.17662801070472792, 0.17618198037466548, 0.17662801070472792, 0.17528991971454058, 0.17796610169491525, 0.18064228367528992, 0.18064228367528992, 0.18287243532560213, 0.17707404103479035, 0.16592328278322926, 0.16280107047279216, 0.16190900981266726, 0.16190900981266726, 0.16146297948260482, 0.16057091882247992, 0.1592328278322926, 0.1592328278322926, 0.15967885816235505, 0.1592328278322926, 0.1632471008028546, 0.1641391614629795, 0.16503122212310437, 0.8777876895628903, 0.8938447814451382, 0.923728813559322, 0.8898305084745762, 0.8715432649420161, 0.1694915254237288, 0.17127564674397858, 0.936663693131133, 0.20695807314897413, 0.19669937555753791, 0.15521855486173058, 0.15075825156110614, 0.1512042818911686, 0.14942016057091884, 0.14897413024085637, 0.14763603925066904, 0.14897413024085637, 0.14897413024085637, 0.14942016057091884, 0.15075825156110614, 0.14986619090098127, 0.14897413024085637, 0.15298840321141838, 0.14942016057091884, 0.14897413024085637, 0.14852809991079394, 0.1480820695807315, 0.1480820695807315, 0.14897413024085637, 0.14897413024085637, 0.1480820695807315, 0.14852809991079394, 0.1503122212310437, 0.1512042818911686, 0.14986619090098127, 0.15075825156110614, 0.15165031222123104, 0.15388046387154328, 0.15744870651204282, 0.16815343443354147, 0.16681534344335414, 0.1592328278322926, 0.1641391614629795, 0.15655664585191792, 0.1543264942016057, 0.15388046387154328, 0.15744870651204282, 0.1543264942016057, 0.15388046387154328, 0.1543264942016057, 0.15521855486173058, 0.15477252453166815, 0.15477252453166815, 0.15566458519179305, 0.15878679750223015, 0.15700267618198038, 0.15789473684210525, 0.15744870651204282, 0.15834076717216772, 0.15789473684210525, 0.15744870651204282, 0.15744870651204282, 0.15834076717216772, 0.15967885816235505, 0.16057091882247992, 0.1632471008028546, 0.1726137377341659, 0.1735057983942908, 0.1784121320249777, 0.17662801070472792, 0.1726137377341659, 0.1726137377341659, 0.18153434433541482, 0.9375557537912578, 0.2149866190900981, 0.2796610169491525, 0.3394290811775201, 0.3559322033898305, 0.38269402319357715, 0.34611953612845675, 0.3015165031222123, 0.24620874219446923, 0.20383586083853703, 0.1726137377341659, 0.16770740410347904, 0.16904549509366637, 0.1672613737734166, 0.1735057983942908, 0.17752007136485282, 0.1904549509366637, 0.20428189116859946, 0.19491525423728814, 0.19669937555753791, 0.1801962533452275, 0.17618198037466548, 0.16770740410347904, 0.1735057983942908, 0.16681534344335414, 0.16503122212310437, 0.16458519179304193, 0.16458519179304193, 0.16503122212310437, 0.16503122212310437, 0.16547725245316683, 0.1663693131132917, 0.16770740410347904, 0.16904549509366637, 0.1694915254237288, 0.19580731489741302, 0.3264942016057092, 0.36529884032114185, 0.44201605709188224, 0.47368421052631576, 0.9420160570918823, 0.6400535236396075, 0.6195361284567351, 0.5744870651204282, 0.5294380017841214, 0.42283675289919714, 0.27564674397859057, 0.1975914362176628, 0.18465655664585193, 0.17752007136485282, 0.16458519179304193, 0.16458519179304193, 0.16503122212310437, 0.16592328278322926, 0.16815343443354147, 0.16993755575379127, 0.1735057983942908, 0.17618198037466548, 0.17573595004460305, 0.17618198037466548, 0.17707404103479035, 0.17796610169491525, 0.1784121320249777, 0.17752007136485282, 0.17752007136485282, 0.17707404103479035, 0.17662801070472792, 0.17528991971454058, 0.17573595004460305, 0.17573595004460305, 0.17752007136485282, 0.17662801070472792, 0.1784121320249777, 0.18108831400535236, 0.18064228367528992, 0.17796610169491525, 0.1784121320249777, 0.1784121320249777, 0.18421052631578946, 0.19000892060660124, 0.19491525423728814, 0.19580731489741302, 0.8577163247100803, 0.20740410347903657, 0.21097234611953614, 0.9464763603925067, 0.21409455842997324, 0.211864406779661, 0.2056199821587868, 0.20294380017841213, 0.20740410347903657, 0.20606601248884923, 0.2016057091882248, 0.20606601248884923, 0.20205173951828725, 0.2024977698483497, 0.20383586083853703, 0.2056199821587868, 0.20695807314897413, 0.20829616413916147, 0.21008028545941124, 0.211864406779661, 0.21231043710972347, 0.215878679750223, 0.227921498661909, 0.24174843889384479, 0.2569134701159679, 0.2662801070472792, 0.28099910793933985, 0.288135593220339, 0.30017841213202495, 0.3033006244424621, 0.3247100802854594, 0.5851917930419268, 0.6342551293487957, 0.6668153434433541, 0.40990187332738626, 0.3898305084745763, 0.3389830508474576, 0.34032114183764495, 0.3416592328278323, 0.3434433541480821, 0.3456735057983943, 0.34611953612845675, 0.3474576271186441, 0.34834968777876896, 0.35548617305976804, 0.3599464763603925, 0.36574487065120426, 0.3719892952720785, 0.37867975022301514, 0.39875111507582517, 0.43755575379125783, 0.49687778768956287, 0.8171275646743978], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Pentapeptide_4.gap.json b/pfam_gap_rates/Pentapeptide_4.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..08f4dce36e170d4d5d84d49fa2003d9271a5850e
--- /dev/null
+++ b/pfam_gap_rates/Pentapeptide_4.gap.json
@@ -0,0 +1 @@
+{"family": "Pentapeptide_4", "n_seqs": 2395, "length": 86, "gap_rates": [0.8292275574112735, 0.6434237995824634, 0.4868475991649269, 0.42379958246346555, 0.3607515657620042, 0.3048016701461378, 0.23674321503131524, 0.17160751565762003, 0.14572025052192067, 0.12108559498956159, 0.10020876826722339, 0.08100208768267224, 0.06597077244258873, 0.05762004175365344, 0.04509394572025052, 0.030480167014613778, 0.02254697286012526, 0.018789144050104383, 0.01837160751565762, 0.0162839248434238, 0.016701461377870562, 0.010438413361169102, 0.008350730688935281, 0.007933194154488519, 0.007098121085594989, 0.005427974947807933, 0.0037578288100208767, 0.003340292275574113, 0.0041753653444676405, 0.0037578288100208767, 0.0029227557411273487, 0.0020876826722338203, 0.0012526096033402922, 0.8588726513569938, 0.8655532359081419, 0.9444676409185804, 0.9494780793319415, 0.867223382045929, 0.8647181628392484, 0.8555323590814197, 0.0016701461377870565, 0.003340292275574113, 0.003340292275574113, 0.0016701461377870565, 0.0016701461377870565, 0.0020876826722338203, 0.0012526096033402922, 0.0025052192066805845, 0.0025052192066805845, 0.0029227557411273487, 0.0037578288100208767, 0.0041753653444676405, 0.005010438413361169, 0.005010438413361169, 0.005010438413361169, 0.005845511482254697, 0.007933194154488519, 0.009603340292275574, 0.012526096033402923, 0.015448851774530271, 0.018789144050104383, 0.022129436325678497, 0.023799582463465554, 0.030062630480167014, 0.03507306889352818, 0.04384133611691023, 0.055532359081419624, 0.0697286012526096, 0.08601252609603341, 0.10939457202505219, 0.12192066805845511, 0.13194154488517745, 0.14697286012526095, 0.169937369519833, 0.19123173277661795, 0.8822546972860126, 0.260125260960334, 0.33110647181628394, 0.592901878914405, 0.437160751565762, 0.4872651356993737, 0.5553235908141962, 0.6100208768267223, 0.6822546972860125, 0.7511482254697286, 0.8555323590814197], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Peptidase_C65.gap.json b/pfam_gap_rates/Peptidase_C65.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..060d37f505e8bf746c195dd1860f751633e4fa3e
--- /dev/null
+++ b/pfam_gap_rates/Peptidase_C65.gap.json
@@ -0,0 +1 @@
+{"family": "Peptidase_C65", "n_seqs": 505, "length": 292, "gap_rates": [0.902970297029703, 0.7683168316831683, 0.6415841584158416, 0.5465346534653466, 0.500990099009901, 0.47128712871287126, 0.4594059405940594, 0.4316831683168317, 0.42574257425742573, 0.4178217821782178, 0.39603960396039606, 0.38613861386138615, 0.3801980198019802, 0.3782178217821782, 0.37623762376237624, 0.3722772277227723, 0.3722772277227723, 0.36237623762376237, 0.3564356435643564, 0.35445544554455444, 0.3485148514851485, 0.3425742574257426, 0.38613861386138615, 0.9227722772277228, 0.6316831683168317, 0.33663366336633666, 0.33663366336633666, 0.3346534653465347, 0.3287128712871287, 0.3287128712871287, 0.32673267326732675, 0.31683168316831684, 0.3089108910891089, 0.29504950495049503, 0.2891089108910891, 0.2891089108910891, 0.2891089108910891, 0.24554455445544554, 0.2376237623762376, 0.9148514851485149, 0.2376237623762376, 0.22772277227722773, 0.22376237623762377, 0.21782178217821782, 0.21782178217821782, 0.21584158415841584, 0.21584158415841584, 0.21584158415841584, 0.21584158415841584, 0.21584158415841584, 0.21782178217821782, 0.21782178217821782, 0.21584158415841584, 0.21386138613861386, 0.21188118811881188, 0.21188118811881188, 0.20396039603960395, 0.201980198019802, 0.19603960396039605, 0.19405940594059407, 0.19405940594059407, 0.19405940594059407, 0.19207920792079208, 0.19801980198019803, 0.201980198019802, 0.201980198019802, 0.22574257425742575, 0.21584158415841584, 0.21386138613861386, 0.2079207920792079, 0.21188118811881188, 0.44752475247524753, 0.42574257425742573, 0.8455445544554455, 0.2, 0.2, 0.2, 0.19603960396039605, 0.19603960396039605, 0.19405940594059407, 0.19603960396039605, 0.19405940594059407, 0.19603960396039605, 0.19603960396039605, 0.19405940594059407, 0.19207920792079208, 0.19207920792079208, 0.19603960396039605, 0.19207920792079208, 0.19207920792079208, 0.1900990099009901, 0.8871287128712871, 0.9128712871287129, 0.9267326732673268, 0.9485148514851485, 0.9207920792079208, 0.900990099009901, 0.8316831683168316, 0.2297029702970297, 0.22772277227722773, 0.20594059405940593, 0.20396039603960395, 0.2, 0.21584158415841584, 0.2099009900990099, 0.21584158415841584, 0.21782178217821782, 0.20594059405940593, 0.2079207920792079, 0.20594059405940593, 0.19603960396039605, 0.19405940594059407, 0.201980198019802, 0.2, 0.201980198019802, 0.201980198019802, 0.2, 0.20594059405940593, 0.2079207920792079, 0.21584158415841584, 0.2079207920792079, 0.2079207920792079, 0.24356435643564356, 0.24752475247524752, 0.2376237623762376, 0.23366336633663368, 0.23366336633663368, 0.2514851485148515, 0.44356435643564357, 0.6158415841584158, 0.6059405940594059, 0.5782178217821782, 0.9108910891089109, 0.7980198019801981, 0.4594059405940594, 0.22376237623762377, 0.21584158415841584, 0.20396039603960395, 0.2, 0.19603960396039605, 0.19603960396039605, 0.19405940594059407, 0.2, 0.19603960396039605, 0.19801980198019803, 0.19207920792079208, 0.21386138613861386, 0.19405940594059407, 0.19405940594059407, 0.18613861386138614, 0.18217821782178217, 0.1782178217821782, 0.17425742574257425, 0.17227722772277226, 0.1702970297029703, 0.1702970297029703, 0.17227722772277226, 0.17623762376237623, 0.1702970297029703, 0.16831683168316833, 0.16633663366336635, 0.1702970297029703, 0.16831683168316833, 0.1702970297029703, 0.18217821782178217, 0.2079207920792079, 0.18415841584158416, 0.18415841584158416, 0.18217821782178217, 0.1782178217821782, 0.1801980198019802, 0.17425742574257425, 0.17425742574257425, 0.17623762376237623, 0.1801980198019802, 0.3287128712871287, 0.7168316831683168, 0.8950495049504951, 0.9128712871287129, 0.8257425742574257, 0.689108910891089, 0.2514851485148515, 0.18613861386138614, 0.1801980198019802, 0.1782178217821782, 0.16831683168316833, 0.1801980198019802, 0.17623762376237623, 0.17227722772277226, 0.17425742574257425, 0.17623762376237623, 0.19603960396039605, 0.18613861386138614, 0.17623762376237623, 0.17425742574257425, 0.17425742574257425, 0.17623762376237623, 0.17623762376237623, 0.17623762376237623, 0.1782178217821782, 0.1782178217821782, 0.18217821782178217, 0.18217821782178217, 0.17425742574257425, 0.17227722772277226, 0.17227722772277226, 0.17227722772277226, 0.17227722772277226, 0.16831683168316833, 0.16831683168316833, 0.16831683168316833, 0.8633663366336634, 0.8673267326732673, 0.8673267326732673, 0.8613861386138614, 0.16831683168316833, 0.16831683168316833, 0.16633663366336635, 0.16435643564356436, 0.16435643564356436, 0.16435643564356436, 0.16633663366336635, 0.1702970297029703, 0.1702970297029703, 0.17227722772277226, 0.21386138613861386, 0.2396039603960396, 0.8693069306930693, 0.9089108910891089, 0.8455445544554455, 0.6693069306930693, 0.3485148514851485, 0.26732673267326734, 0.25742574257425743, 0.2396039603960396, 0.23366336633663368, 0.201980198019802, 0.2079207920792079, 0.21188118811881188, 0.21188118811881188, 0.21584158415841584, 0.22772277227722773, 0.592079207920792, 0.601980198019802, 0.6693069306930693, 0.6851485148514852, 0.8415841584158416, 0.9326732673267327, 0.9465346534653465, 0.8891089108910891, 0.7683168316831683, 0.6257425742574257, 0.6059405940594059, 0.5405940594059406, 0.3702970297029703, 0.2811881188118812, 0.904950495049505, 0.9188118811881189, 0.9227722772277228, 0.9247524752475248, 0.9346534653465347, 0.9405940594059405, 0.9425742574257425, 0.9445544554455445, 0.9485148514851485, 0.9445544554455445, 0.9405940594059405, 0.9386138613861386, 0.9247524752475248, 0.9227722772277228, 0.9207920792079208, 0.9128712871287129, 0.902970297029703, 0.23564356435643563, 0.201980198019802, 0.2, 0.2, 0.2, 0.2, 0.2, 0.2, 0.201980198019802, 0.20396039603960395, 0.2079207920792079, 0.2099009900990099, 0.21188118811881188, 0.21188118811881188, 0.21584158415841584, 0.2198019801980198, 0.25544554455445545, 0.3188118811881188, 0.48514851485148514], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Peptidase_M11.gap.json b/pfam_gap_rates/Peptidase_M11.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..199b99fcdb265f7588bd9fa8692f9d9f9f1ca3cc
--- /dev/null
+++ b/pfam_gap_rates/Peptidase_M11.gap.json
@@ -0,0 +1 @@
+{"family": "Peptidase_M11", "n_seqs": 188, "length": 392, "gap_rates": [0.7180851063829787, 0.6542553191489362, 0.601063829787234, 0.5638297872340425, 0.5372340425531915, 0.5106382978723404, 0.5106382978723404, 0.5053191489361702, 0.48936170212765956, 0.4734042553191489, 0.46808510638297873, 0.4521276595744681, 0.43617021276595747, 0.44148936170212766, 0.9148936170212766, 0.8776595744680851, 0.4148936170212766, 0.40425531914893614, 0.40425531914893614, 0.39361702127659576, 0.3829787234042553, 0.3776595744680851, 0.3617021276595745, 0.3670212765957447, 0.3404255319148936, 0.3351063829787234, 0.3351063829787234, 0.3351063829787234, 0.32978723404255317, 0.32978723404255317, 0.3829787234042553, 0.3882978723404255, 0.3723404255319149, 0.3617021276595745, 0.3404255319148936, 0.3351063829787234, 0.324468085106383, 0.35638297872340424, 0.2765957446808511, 0.25, 0.24468085106382978, 0.23404255319148937, 0.22872340425531915, 0.22872340425531915, 0.22872340425531915, 0.22872340425531915, 0.22872340425531915, 0.22872340425531915, 0.22872340425531915, 0.22872340425531915, 0.22872340425531915, 0.2393617021276596, 0.2393617021276596, 0.23404255319148937, 0.25, 0.925531914893617, 0.24468085106382978, 0.2393617021276596, 0.2393617021276596, 0.2393617021276596, 0.22872340425531915, 0.24468085106382978, 0.25, 0.24468085106382978, 0.7446808510638298, 0.23404255319148937, 0.23404255319148937, 0.2393617021276596, 0.24468085106382978, 0.25, 0.25, 0.24468085106382978, 0.26063829787234044, 0.24468085106382978, 0.24468085106382978, 0.75, 0.7446808510638298, 0.723404255319149, 0.6914893617021277, 0.6382978723404256, 0.9095744680851063, 0.925531914893617, 0.9042553191489362, 0.5957446808510638, 0.6170212765957447, 0.601063829787234, 0.5797872340425532, 0.5531914893617021, 0.5372340425531915, 0.31382978723404253, 0.23404255319148937, 0.2393617021276596, 0.24468085106382978, 0.5957446808510638, 0.925531914893617, 0.526595744680851, 0.5212765957446809, 0.2712765957446808, 0.2712765957446808, 0.21808510638297873, 0.19680851063829788, 0.20212765957446807, 0.19148936170212766, 0.18085106382978725, 0.18085106382978725, 0.18617021276595744, 0.18085106382978725, 0.17553191489361702, 0.18085106382978725, 0.18085106382978725, 0.17553191489361702, 0.19148936170212766, 0.39361702127659576, 0.9202127659574468, 0.9095744680851063, 0.22872340425531915, 0.24468085106382978, 0.31382978723404253, 0.21808510638297873, 0.22340425531914893, 0.9468085106382979, 0.20212765957446807, 0.18617021276595744, 0.18085106382978725, 0.17553191489361702, 0.17553191489361702, 0.18085106382978725, 0.1595744680851064, 0.1595744680851064, 0.16489361702127658, 0.1595744680851064, 0.1595744680851064, 0.16489361702127658, 0.16489361702127658, 0.25, 0.2127659574468085, 0.6542553191489362, 0.9095744680851063, 0.925531914893617, 0.8882978723404256, 0.5957446808510638, 0.18085106382978725, 0.17553191489361702, 0.18617021276595744, 0.17553191489361702, 0.18085106382978725, 0.18085106382978725, 0.18085106382978725, 0.18085106382978725, 0.18617021276595744, 0.7287234042553191, 0.18085106382978725, 0.9148936170212766, 0.723404255319149, 0.30319148936170215, 0.25, 0.21808510638297873, 0.21808510638297873, 0.19148936170212766, 0.19148936170212766, 0.17553191489361702, 0.18617021276595744, 0.20212765957446807, 0.2074468085106383, 0.2074468085106383, 0.3723404255319149, 0.25, 0.2127659574468085, 0.18617021276595744, 0.1702127659574468, 0.14893617021276595, 0.7446808510638298, 0.8191489361702128, 0.851063829787234, 0.8617021276595744, 0.8829787234042553, 0.8936170212765957, 0.9095744680851063, 0.9148936170212766, 0.9095744680851063, 0.8829787234042553, 0.8776595744680851, 0.8617021276595744, 0.8457446808510638, 0.75, 0.7393617021276596, 0.14361702127659576, 0.14361702127659576, 0.1276595744680851, 0.1276595744680851, 0.1276595744680851, 0.1276595744680851, 0.1276595744680851, 0.1276595744680851, 0.1276595744680851, 0.1276595744680851, 0.1276595744680851, 0.13829787234042554, 0.14361702127659576, 0.14361702127659576, 0.13829787234042554, 0.14361702127659576, 0.9468085106382979, 0.9468085106382979, 0.8776595744680851, 0.14893617021276595, 0.8723404255319149, 0.8936170212765957, 0.9361702127659575, 0.9095744680851063, 0.8936170212765957, 0.8457446808510638, 0.15425531914893617, 0.1276595744680851, 0.9308510638297872, 0.9308510638297872, 0.12234042553191489, 0.1276595744680851, 0.12234042553191489, 0.11170212765957446, 0.11702127659574468, 0.11702127659574468, 0.11702127659574468, 0.12234042553191489, 0.12234042553191489, 0.12234042553191489, 0.8670212765957447, 0.8723404255319149, 0.9095744680851063, 0.925531914893617, 0.8936170212765957, 0.8670212765957447, 0.8670212765957447, 0.1276595744680851, 0.7127659574468085, 0.8457446808510638, 0.8670212765957447, 0.9202127659574468, 0.9095744680851063, 0.8457446808510638, 0.8404255319148937, 0.6702127659574468, 0.1276595744680851, 0.13297872340425532, 0.14361702127659576, 0.13829787234042554, 0.13829787234042554, 0.13829787234042554, 0.13829787234042554, 0.13829787234042554, 0.13829787234042554, 0.13829787234042554, 0.14893617021276595, 0.15425531914893617, 0.16489361702127658, 0.1702127659574468, 0.17553191489361702, 0.17553191489361702, 0.18617021276595744, 0.2127659574468085, 0.2127659574468085, 0.925531914893617, 0.925531914893617, 0.9361702127659575, 0.9468085106382979, 0.9468085106382979, 0.9308510638297872, 0.925531914893617, 0.9202127659574468, 0.21808510638297873, 0.26063829787234044, 0.5159574468085106, 0.5053191489361702, 0.9361702127659575, 0.4946808510638298, 0.28191489361702127, 0.2393617021276596, 0.2393617021276596, 0.23404255319148937, 0.24468085106382978, 0.24468085106382978, 0.25, 0.2712765957446808, 0.3191489361702128, 0.6063829787234043, 0.26063829787234044, 0.2553191489361702, 0.24468085106382978, 0.24468085106382978, 0.2553191489361702, 0.25, 0.25, 0.2553191489361702, 0.26595744680851063, 0.26063829787234044, 0.2712765957446808, 0.2712765957446808, 0.39893617021276595, 0.2872340425531915, 0.39361702127659576, 0.2978723404255319, 0.2925531914893617, 0.2765957446808511, 0.2765957446808511, 0.28191489361702127, 0.324468085106383, 0.2925531914893617, 0.9361702127659575, 0.9414893617021277, 0.9095744680851063, 0.30319148936170215, 0.324468085106383, 0.3191489361702128, 0.3191489361702128, 0.3191489361702128, 0.31382978723404253, 0.324468085106383, 0.4734042553191489, 0.48936170212765956, 0.4627659574468085, 0.44680851063829785, 0.4095744680851064, 0.40425531914893614, 0.31382978723404253, 0.30851063829787234, 0.30851063829787234, 0.30851063829787234, 0.30851063829787234, 0.30851063829787234, 0.30851063829787234, 0.30851063829787234, 0.30851063829787234, 0.31382978723404253, 0.3191489361702128, 0.31382978723404253, 0.3191489361702128, 0.324468085106383, 0.8936170212765957, 0.9148936170212766, 0.8723404255319149, 0.75, 0.3351063829787234, 0.34574468085106386, 0.3404255319148936, 0.3351063829787234, 0.3404255319148936, 0.3404255319148936, 0.35106382978723405, 0.3670212765957447, 0.34574468085106386, 0.34574468085106386, 0.34574468085106386, 0.35638297872340424, 0.3670212765957447, 0.3617021276595745, 0.3617021276595745, 0.3829787234042553, 0.4095744680851064, 0.4521276595744681, 0.4574468085106383, 0.7606382978723404, 0.8404255319148937, 0.7712765957446809, 0.7340425531914894, 0.5212765957446809, 0.5372340425531915, 0.5585106382978723, 0.5957446808510638, 0.601063829787234, 0.6117021276595744, 0.601063829787234, 0.6117021276595744, 0.6382978723404256, 0.648936170212766, 0.648936170212766, 0.6595744680851063, 0.6648936170212766, 0.6702127659574468, 0.675531914893617, 0.6968085106382979, 0.6968085106382979, 0.6968085106382979, 0.6968085106382979, 0.7074468085106383, 0.7074468085106383, 0.7127659574468085, 0.723404255319149, 0.7287234042553191, 0.7446808510638298, 0.75, 0.7553191489361702, 0.8351063829787234], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Peptidase_M15_2.gap.json b/pfam_gap_rates/Peptidase_M15_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a667f8265123f8ed534fa665a897658466c69180
--- /dev/null
+++ b/pfam_gap_rates/Peptidase_M15_2.gap.json
@@ -0,0 +1 @@
+{"family": "Peptidase_M15_2", "n_seqs": 303, "length": 153, "gap_rates": [0.8679867986798679, 0.6963696369636964, 0.48184818481848185, 0.29042904290429045, 0.18811881188118812, 0.1551155115511551, 0.12211221122112212, 0.11551155115511551, 0.10891089108910891, 0.10231023102310231, 0.0924092409240924, 0.0924092409240924, 0.08250825082508251, 0.07590759075907591, 0.07260726072607261, 0.066006600660066, 0.066006600660066, 0.066006600660066, 0.066006600660066, 0.066006600660066, 0.066006600660066, 0.066006600660066, 0.06930693069306931, 0.06930693069306931, 0.06930693069306931, 0.0627062706270627, 0.066006600660066, 0.0594059405940594, 0.0594059405940594, 0.056105610561056105, 0.056105610561056105, 0.056105610561056105, 0.056105610561056105, 0.056105610561056105, 0.052805280528052806, 0.052805280528052806, 0.052805280528052806, 0.04950495049504951, 0.04950495049504951, 0.04950495049504951, 0.04950495049504951, 0.04950495049504951, 0.04950495049504951, 0.04950495049504951, 0.04950495049504951, 0.0462046204620462, 0.052805280528052806, 0.04950495049504951, 0.0462046204620462, 0.04950495049504951, 0.0462046204620462, 0.0462046204620462, 0.0462046204620462, 0.0462046204620462, 0.0462046204620462, 0.0462046204620462, 0.0462046204620462, 0.0462046204620462, 0.0462046204620462, 0.0462046204620462, 0.0462046204620462, 0.0462046204620462, 0.0429042904290429, 0.0429042904290429, 0.0429042904290429, 0.0429042904290429, 0.0429042904290429, 0.039603960396039604, 0.0429042904290429, 0.052805280528052806, 0.0627062706270627, 0.052805280528052806, 0.9471947194719472, 0.0462046204620462, 0.0462046204620462, 0.0462046204620462, 0.0462046204620462, 0.0462046204620462, 0.0429042904290429, 0.0429042904290429, 0.0429042904290429, 0.04950495049504951, 0.0462046204620462, 0.0462046204620462, 0.0462046204620462, 0.052805280528052806, 0.056105610561056105, 0.066006600660066, 0.07260726072607261, 0.07920792079207921, 0.0924092409240924, 0.0858085808580858, 0.07590759075907591, 0.07260726072607261, 0.0594059405940594, 0.04950495049504951, 0.0429042904290429, 0.033003300330033, 0.026402640264026403, 0.026402640264026403, 0.026402640264026403, 0.026402640264026403, 0.0231023102310231, 0.0231023102310231, 0.0231023102310231, 0.0231023102310231, 0.0231023102310231, 0.0231023102310231, 0.0231023102310231, 0.0231023102310231, 0.0231023102310231, 0.0231023102310231, 0.0231023102310231, 0.0231023102310231, 0.0297029702970297, 0.0231023102310231, 0.0231023102310231, 0.0231023102310231, 0.0231023102310231, 0.0231023102310231, 0.0231023102310231, 0.0231023102310231, 0.0231023102310231, 0.0231023102310231, 0.0231023102310231, 0.0231023102310231, 0.0231023102310231, 0.0231023102310231, 0.0231023102310231, 0.0231023102310231, 0.0231023102310231, 0.0231023102310231, 0.0231023102310231, 0.0231023102310231, 0.0231023102310231, 0.026402640264026403, 0.026402640264026403, 0.066006600660066, 0.052805280528052806, 0.8217821782178217, 0.8052805280528053, 0.036303630363036306, 0.0231023102310231, 0.0231023102310231, 0.0231023102310231, 0.0231023102310231, 0.026402640264026403, 0.056105610561056105, 0.0594059405940594, 0.0627062706270627, 0.066006600660066, 0.06930693069306931, 0.06930693069306931], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Peptidase_M15_3.gap.json b/pfam_gap_rates/Peptidase_M15_3.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a35ceb6fdacd5234b047ce0b8d9eccee35ba2dad
--- /dev/null
+++ b/pfam_gap_rates/Peptidase_M15_3.gap.json
@@ -0,0 +1 @@
+{"family": "Peptidase_M15_3", "n_seqs": 334, "length": 128, "gap_rates": [0.7095808383233533, 0.4550898203592814, 0.4101796407185629, 0.40119760479041916, 0.38922155688622756, 0.38622754491017963, 0.38023952095808383, 0.3772455089820359, 0.3712574850299401, 0.3592814371257485, 0.3532934131736527, 0.344311377245509, 0.3323353293413174, 0.5359281437125748, 0.4251497005988024, 0.3772455089820359, 0.344311377245509, 0.31736526946107785, 0.30538922155688625, 0.3143712574850299, 0.6137724550898204, 0.592814371257485, 0.5958083832335329, 0.5658682634730539, 0.5838323353293413, 0.5479041916167665, 0.4880239520958084, 0.7634730538922155, 0.8622754491017964, 0.781437125748503, 0.6706586826347305, 0.30538922155688625, 0.12874251497005987, 0.10479041916167664, 0.09880239520958084, 0.08982035928143713, 0.08682634730538923, 0.0748502994011976, 0.0718562874251497, 0.06287425149700598, 0.059880239520958084, 0.05688622754491018, 0.05089820359281437, 0.04790419161676647, 0.05089820359281437, 0.041916167664670656, 0.03293413173652695, 0.1317365269461078, 0.9431137724550899, 0.7455089820359282, 0.023952095808383235, 0.014970059880239521, 0.0029940119760479044, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0029940119760479044, 0.005988023952095809, 0.011976047904191617, 0.014970059880239521, 0.011976047904191617, 0.011976047904191617, 0.041916167664670656, 0.041916167664670656, 0.038922155688622756, 0.023952095808383235, 0.011976047904191617, 0.005988023952095809, 0.005988023952095809, 0.005988023952095809, 0.005988023952095809, 0.005988023952095809, 0.011976047904191617, 0.008982035928143712, 0.005988023952095809, 0.005988023952095809, 0.005988023952095809, 0.005988023952095809, 0.005988023952095809, 0.005988023952095809, 0.008982035928143712, 0.017964071856287425, 0.029940119760479042, 0.09281437125748503, 0.9461077844311377, 0.7994011976047904, 0.08383233532934131, 0.07784431137724551, 0.09281437125748503, 0.11377245508982035, 0.1377245508982036, 0.1467065868263473, 0.1497005988023952, 0.1467065868263473, 0.1497005988023952, 0.16766467065868262, 0.17065868263473055, 0.18263473053892215, 0.18263473053892215, 0.18263473053892215, 0.20359281437125748, 0.2275449101796407, 0.2275449101796407, 0.844311377245509, 0.9491017964071856, 0.8652694610778443, 0.6946107784431138, 0.2275449101796407, 0.24550898203592814, 0.24850299401197604, 0.27844311377245506, 0.31736526946107785, 0.2964071856287425, 0.8952095808383234, 0.9161676646706587, 0.9461077844311377, 0.9011976047904192, 0.8682634730538922, 0.27245508982035926, 0.26646706586826346, 0.2694610778443114, 0.2694610778443114, 0.27245508982035926, 0.47904191616766467], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Peptidase_M16_M.gap.json b/pfam_gap_rates/Peptidase_M16_M.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..1354d77e2728ec8523a30a0bdc1a647372ecb62e
--- /dev/null
+++ b/pfam_gap_rates/Peptidase_M16_M.gap.json
@@ -0,0 +1 @@
+{"family": "Peptidase_M16_M", "n_seqs": 819, "length": 329, "gap_rates": [0.2515262515262515, 0.24664224664224665, 0.23687423687423687, 0.23076923076923078, 0.2222222222222222, 0.21367521367521367, 0.2026862026862027, 0.1916971916971917, 0.18803418803418803, 0.18437118437118438, 0.1794871794871795, 0.17704517704517705, 0.17582417582417584, 0.17216117216117216, 0.17216117216117216, 0.17338217338217338, 0.17216117216117216, 0.17216117216117216, 0.17216117216117216, 0.1684981684981685, 0.1684981684981685, 0.16483516483516483, 0.9365079365079365, 0.7643467643467643, 0.16361416361416362, 0.1623931623931624, 0.16117216117216118, 0.15995115995115994, 0.15995115995115994, 0.15873015873015872, 0.1575091575091575, 0.1562881562881563, 0.18437118437118438, 0.1684981684981685, 0.1575091575091575, 0.1562881562881563, 0.1623931623931624, 0.15995115995115994, 0.15262515262515264, 0.1514041514041514, 0.14652014652014653, 0.14407814407814407, 0.14407814407814407, 0.14285714285714285, 0.1452991452991453, 0.14652014652014653, 0.14407814407814407, 0.14285714285714285, 0.14285714285714285, 0.14285714285714285, 0.14407814407814407, 0.14285714285714285, 0.14285714285714285, 0.14407814407814407, 0.1391941391941392, 0.14041514041514042, 0.1391941391941392, 0.1391941391941392, 0.13675213675213677, 0.13553113553113552, 0.13675213675213677, 0.13797313797313798, 0.13675213675213677, 0.13553113553113552, 0.13675213675213677, 0.9426129426129426, 0.9474969474969475, 0.9462759462759462, 0.9365079365079365, 0.14774114774114774, 0.7557997557997558, 0.43345543345543347, 0.20634920634920634, 0.20757020757020758, 0.8363858363858364, 0.9316239316239316, 0.5531135531135531, 0.13186813186813187, 0.8351648351648352, 0.8827838827838828, 0.9120879120879121, 0.9365079365079365, 0.9487179487179487, 0.9413919413919414, 0.9304029304029304, 0.8937728937728938, 0.8620268620268621, 0.8144078144078144, 0.12576312576312576, 0.12454212454212454, 0.12332112332112333, 0.1221001221001221, 0.1221001221001221, 0.1221001221001221, 0.12332112332112333, 0.12454212454212454, 0.12332112332112333, 0.12332112332112333, 0.12332112332112333, 0.12454212454212454, 0.12698412698412698, 0.13186813186813187, 0.1330891330891331, 0.13064713064713065, 0.13553113553113552, 0.1343101343101343, 0.1391941391941392, 0.1343101343101343, 0.13675213675213677, 0.1855921855921856, 0.1684981684981685, 0.17094017094017094, 0.1916971916971917, 0.1807081807081807, 0.9352869352869353, 0.8021978021978022, 0.1794871794871795, 0.20512820512820512, 0.8253968253968254, 0.8705738705738706, 0.927960927960928, 0.884004884004884, 0.8461538461538461, 0.800976800976801, 0.1623931623931624, 0.1562881562881563, 0.14652014652014653, 0.14407814407814407, 0.14407814407814407, 0.1452991452991453, 0.14041514041514042, 0.1391941391941392, 0.14041514041514042, 0.1391941391941392, 0.1391941391941392, 0.14041514041514042, 0.13797313797313798, 0.13553113553113552, 0.13553113553113552, 0.1391941391941392, 0.1391941391941392, 0.14041514041514042, 0.14285714285714285, 0.14163614163614163, 0.8400488400488401, 0.8876678876678876, 0.9157509157509157, 0.9242979242979243, 0.9352869352869353, 0.9438339438339438, 0.9499389499389499, 0.9377289377289377, 0.9304029304029304, 0.9181929181929182, 0.905982905982906, 0.8681318681318682, 0.8217338217338217, 0.26373626373626374, 0.26495726495726496, 0.9365079365079365, 0.4249084249084249, 0.27594627594627597, 0.4126984126984127, 0.9047619047619048, 0.15873015873015872, 0.15018315018315018, 0.14407814407814407, 0.14407814407814407, 0.14285714285714285, 0.14163614163614163, 0.1391941391941392, 0.13797313797313798, 0.13675213675213677, 0.13553113553113552, 0.14407814407814407, 0.1452991452991453, 0.14407814407814407, 0.14407814407814407, 0.1452991452991453, 0.1391941391941392, 0.13553113553113552, 0.13797313797313798, 0.13797313797313798, 0.13675213675213677, 0.13797313797313798, 0.13797313797313798, 0.14163614163614163, 0.13797313797313798, 0.13675213675213677, 0.1330891330891331, 0.1343101343101343, 0.12942612942612944, 0.12942612942612944, 0.1282051282051282, 0.1282051282051282, 0.1282051282051282, 0.12698412698412698, 0.1282051282051282, 0.1282051282051282, 0.12698412698412698, 0.12576312576312576, 0.12454212454212454, 0.12454212454212454, 0.12698412698412698, 0.13064713064713065, 0.15506715506715507, 0.1343101343101343, 0.1282051282051282, 0.12698412698412698, 0.12698412698412698, 0.12576312576312576, 0.12576312576312576, 0.1221001221001221, 0.1221001221001221, 0.1221001221001221, 0.12087912087912088, 0.12087912087912088, 0.1221001221001221, 0.12332112332112333, 0.12454212454212454, 0.12087912087912088, 0.11965811965811966, 0.11965811965811966, 0.11843711843711843, 0.11843711843711843, 0.11721611721611722, 0.11721611721611722, 0.11477411477411477, 0.115995115995116, 0.11721611721611722, 0.11843711843711843, 0.11965811965811966, 0.11965811965811966, 0.1221001221001221, 0.1221001221001221, 0.12698412698412698, 0.12454212454212454, 0.12087912087912088, 0.11965811965811966, 0.11965811965811966, 0.11843711843711843, 0.11965811965811966, 0.11843711843711843, 0.1282051282051282, 0.1221001221001221, 0.12332112332112333, 0.15262515262515264, 0.12087912087912088, 0.11965811965811966, 0.1221001221001221, 0.12087912087912088, 0.1221001221001221, 0.12698412698412698, 0.12576312576312576, 0.12576312576312576, 0.12942612942612944, 0.12942612942612944, 0.12942612942612944, 0.12454212454212454, 0.12454212454212454, 0.12454212454212454, 0.12454212454212454, 0.12454212454212454, 0.12576312576312576, 0.12576312576312576, 0.12576312576312576, 0.1282051282051282, 0.12942612942612944, 0.12942612942612944, 0.13064713064713065, 0.12942612942612944, 0.13064713064713065, 0.16483516483516483, 0.14041514041514042, 0.8547008547008547, 0.9499389499389499, 0.9255189255189256, 0.8168498168498168, 0.13553113553113552, 0.13797313797313798, 0.14041514041514042, 0.14041514041514042, 0.14041514041514042, 0.13553113553113552, 0.1343101343101343, 0.1343101343101343, 0.1343101343101343, 0.1343101343101343, 0.1343101343101343, 0.13553113553113552, 0.1391941391941392, 0.13797313797313798, 0.13675213675213677, 0.13797313797313798, 0.13797313797313798, 0.13797313797313798, 0.13797313797313798, 0.14041514041514042, 0.2967032967032967, 0.14407814407814407, 0.14407814407814407, 0.1452991452991453, 0.14896214896214896, 0.15018315018315018, 0.15262515262515264, 0.15384615384615385, 0.15506715506715507, 0.15506715506715507, 0.1575091575091575, 0.1575091575091575, 0.16117216117216118, 0.1623931623931624, 0.16361416361416362, 0.16605616605616605, 0.1684981684981685, 0.1684981684981685, 0.1746031746031746, 0.18192918192918192, 0.1978021978021978, 0.18803418803418803, 0.19658119658119658, 0.2039072039072039, 0.21123321123321123, 0.221001221001221, 0.231990231990232, 0.2588522588522589, 0.3028083028083028, 0.398046398046398, 0.7557997557997558], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Peptidase_M17_N.gap.json b/pfam_gap_rates/Peptidase_M17_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..5734d6615f4159a6aacd61185af8d965537a9958
--- /dev/null
+++ b/pfam_gap_rates/Peptidase_M17_N.gap.json
@@ -0,0 +1 @@
+{"family": "Peptidase_M17_N", "n_seqs": 1399, "length": 149, "gap_rates": [0.6254467476769121, 0.5318084345961401, 0.501072194424589, 0.4839170836311651, 0.4710507505360972, 0.8927805575411007, 0.9485346676197284, 0.9099356683345247, 0.8591851322373124, 0.44603288062902074, 0.4260185847033595, 0.413867047891351, 0.4024303073624017, 0.3924231593995711, 0.3759828448892066, 0.365975696926376, 0.3509649749821301, 0.33523945675482486, 0.9235167977126519, 0.9456754824874911, 0.8341672623302359, 0.32237312365975695, 0.2873481057898499, 0.2573266619013581, 0.23874195854181557, 0.2444603288062902, 0.22301644031451037, 0.1908506075768406, 0.1887062187276626, 0.16940671908506075, 0.15582558970693353, 0.1343817012151537, 0.12294496068620443, 0.11222301644031452, 0.10578984989278056, 0.09506790564689063, 0.09077912794853467, 0.08791994281629735, 0.07862759113652609, 0.07005003573981415, 0.07147962830593281, 0.06576125804145819, 0.0864903502501787, 0.062187276626161546, 0.054324517512508934, 0.05075053609721229, 0.04860614724803431, 0.05003573981415296, 0.04932094353109364, 0.04860614724803431, 0.04860614724803431, 0.04860614724803431, 0.04789135096497498, 0.04789135096497498, 0.04932094353109364, 0.06647605432451752, 0.09506790564689063, 0.34453180843459613, 0.9449606862044317, 0.12008577555396711, 0.0943531093638313, 0.061472480343102216, 0.04431736954967834, 0.03788420300214439, 0.034310221586847746, 0.032880629020729094, 0.03359542530378842, 0.034310221586847746, 0.040028591851322376, 0.03716940671908506, 0.03002144388849178, 0.031451036454610434, 0.09792709077912795, 0.8184417441029307, 0.8770550393137956, 0.9156540385989993, 0.9242315939957112, 0.9292351679771265, 0.9228020014295926, 0.8992137240886348, 0.8448892065761258, 0.7891350964974982, 0.1529664045746962, 0.09220872051465333, 0.029306647605432452, 0.01143674052894925, 0.009292351679771264, 0.007862759113652609, 0.007147962830593281, 0.008577555396711936, 0.007862759113652609, 0.009292351679771264, 0.010721944245889922, 0.01143674052894925, 0.010721944245889922, 0.010721944245889922, 0.010721944245889922, 0.01501072194424589, 0.014295925661186561, 0.016440314510364547, 0.017869907076483203, 0.9292351679771265, 0.14224446032880628, 0.11508220157255182, 0.027877055039313797, 0.020729092208720514, 0.01501072194424589, 0.01501072194424589, 0.014295925661186561, 0.015725518227305217, 0.016440314510364547, 0.015725518227305217, 0.017155110793423873, 0.538241601143674, 0.46175839885632597, 0.39528234453180844, 0.3416726233023588, 0.268048606147248, 0.2416011436740529, 0.2008577555396712, 0.15082201572551823, 0.6197283774124375, 0.9463902787705504, 0.8970693352394568, 0.5260900643316655, 0.061472480343102216, 0.05146533238027162, 0.031451036454610434, 0.032165832737669764, 0.03359542530378842, 0.03359542530378842, 0.034310221586847746, 0.036454610436025735, 0.040028591851322376, 0.040028591851322376, 0.0407433881343817, 0.04288777698355969, 0.04360257326661901, 0.04717655468191565, 0.05003573981415296, 0.05075053609721229, 0.06862044317369549, 0.07862759113652609, 0.10078627591136526, 0.12580414581844174, 0.15082201572551823, 0.19156540385989992, 0.2909220872051465, 0.6740528949249464], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Peptidase_M48.gap.json b/pfam_gap_rates/Peptidase_M48.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..2605be3bc25f695576f6b2fed09da6945485f4de
--- /dev/null
+++ b/pfam_gap_rates/Peptidase_M48.gap.json
@@ -0,0 +1 @@
+{"family": "Peptidase_M48", "n_seqs": 5000, "length": 251, "gap_rates": [0.9124, 0.784, 0.6396, 0.52, 0.4318, 0.3774, 0.335, 0.3166, 0.294, 0.277, 0.2656, 0.2578, 0.2498, 0.2422, 0.234, 0.2296, 0.222, 0.2154, 0.2114, 0.2022, 0.7006, 0.6016, 0.1512, 0.1268, 0.1124, 0.1052, 0.098, 0.095, 0.092, 0.0894, 0.0874, 0.0852, 0.0842, 0.0966, 0.0998, 0.831, 0.856, 0.846, 0.7634, 0.075, 0.0742, 0.0696, 0.068, 0.0672, 0.0656, 0.0618, 0.059, 0.47, 0.432, 0.4412, 0.6828, 0.0586, 0.0454, 0.0448, 0.044, 0.0434, 0.0424, 0.0406, 0.0402, 0.0404, 0.9484, 0.93, 0.587, 0.0496, 0.0374, 0.036, 0.034, 0.0338, 0.0336, 0.0336, 0.0328, 0.033, 0.033, 0.0324, 0.0318, 0.032, 0.032, 0.0322, 0.0322, 0.0322, 0.033, 0.033, 0.0338, 0.036, 0.038, 0.039, 0.04, 0.0676, 0.0688, 0.0758, 0.9152, 0.935, 0.8234, 0.0866, 0.0848, 0.0872, 0.0906, 0.09, 0.091, 0.0956, 0.0978, 0.1014, 0.102, 0.1052, 0.107, 0.1068, 0.1088, 0.1124, 0.155, 0.2338, 0.2146, 0.2012, 0.1924, 0.1852, 0.1812, 0.1742, 0.168, 0.164, 0.1584, 0.155, 0.1522, 0.148, 0.1504, 0.1956, 0.267, 0.2302, 0.2126, 0.2028, 0.199, 0.2384, 0.296, 0.2816, 0.3192, 0.2892, 0.3072, 0.3144, 0.3258, 0.3928, 0.3546, 0.2548, 0.5756, 0.605, 0.6292, 0.6948, 0.7218, 0.8264, 0.9372, 0.8584, 0.7554, 0.7058, 0.6516, 0.6238, 0.5904, 0.568, 0.1006, 0.0996, 0.0988, 0.0986, 0.0984, 0.0976, 0.0974, 0.097, 0.0964, 0.0966, 0.097, 0.0968, 0.097, 0.0972, 0.0974, 0.0978, 0.0988, 0.0996, 0.0996, 0.2842, 0.1116, 0.1078, 0.1054, 0.1048, 0.104, 0.105, 0.1048, 0.1056, 0.1068, 0.1076, 0.1082, 0.1096, 0.112, 0.1142, 0.1144, 0.1188, 0.121, 0.937, 0.9416, 0.9478, 0.944, 0.9394, 0.926, 0.1256, 0.1612, 0.1646, 0.1658, 0.1676, 0.1698, 0.2028, 0.2492, 0.279, 0.5688, 0.6068, 0.6212, 0.6466, 0.6674, 0.696, 0.7304, 0.784, 0.8258, 0.9046, 0.9322, 0.9374, 0.9492, 0.9462, 0.9352, 0.9172, 0.8798, 0.8106, 0.7518, 0.714, 0.681, 0.6552, 0.6328, 0.6148, 0.5962, 0.508, 0.1534, 0.1302, 0.1278, 0.1266, 0.1262, 0.1256, 0.1256, 0.1256, 0.1266, 0.1272, 0.1274, 0.1276, 0.1334, 0.1378, 0.1502, 0.1692, 0.2336, 0.355, 0.6522], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Peptidase_M90.gap.json b/pfam_gap_rates/Peptidase_M90.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..6263c7398469e789f8128f14811473a6430140d5
--- /dev/null
+++ b/pfam_gap_rates/Peptidase_M90.gap.json
@@ -0,0 +1 @@
+{"family": "Peptidase_M90", "n_seqs": 294, "length": 263, "gap_rates": [0.7380952380952381, 0.6156462585034014, 0.5068027210884354, 0.4489795918367347, 0.41836734693877553, 0.4013605442176871, 0.41496598639455784, 0.9489795918367347, 0.5136054421768708, 0.32653061224489793, 0.2755102040816326, 0.23129251700680273, 0.19387755102040816, 0.16326530612244897, 0.1360544217687075, 0.11564625850340136, 0.10884353741496598, 0.10204081632653061, 0.0782312925170068, 0.07142857142857142, 0.061224489795918366, 0.061224489795918366, 0.05782312925170068, 0.08503401360544217, 0.08503401360544217, 0.05442176870748299, 0.05102040816326531, 0.05102040816326531, 0.05102040816326531, 0.05102040816326531, 0.05102040816326531, 0.047619047619047616, 0.05102040816326531, 0.047619047619047616, 0.047619047619047616, 0.04421768707482993, 0.04421768707482993, 0.04421768707482993, 0.04421768707482993, 0.04421768707482993, 0.04421768707482993, 0.04421768707482993, 0.04421768707482993, 0.04421768707482993, 0.04421768707482993, 0.04421768707482993, 0.04081632653061224, 0.04081632653061224, 0.04081632653061224, 0.03741496598639456, 0.03741496598639456, 0.03741496598639456, 0.03741496598639456, 0.03741496598639456, 0.03741496598639456, 0.03741496598639456, 0.04081632653061224, 0.04421768707482993, 0.22108843537414966, 0.04421768707482993, 0.04081632653061224, 0.03741496598639456, 0.03741496598639456, 0.03741496598639456, 0.03741496598639456, 0.034013605442176874, 0.034013605442176874, 0.034013605442176874, 0.034013605442176874, 0.034013605442176874, 0.034013605442176874, 0.034013605442176874, 0.034013605442176874, 0.034013605442176874, 0.034013605442176874, 0.034013605442176874, 0.034013605442176874, 0.034013605442176874, 0.03741496598639456, 0.03741496598639456, 0.03741496598639456, 0.03741496598639456, 0.9319727891156463, 0.04421768707482993, 0.03741496598639456, 0.03741496598639456, 0.03741496598639456, 0.03741496598639456, 0.03741496598639456, 0.034013605442176874, 0.034013605442176874, 0.03741496598639456, 0.03741496598639456, 0.03741496598639456, 0.03741496598639456, 0.03741496598639456, 0.03741496598639456, 0.03741496598639456, 0.03741496598639456, 0.03741496598639456, 0.03741496598639456, 0.21768707482993196, 0.2653061224489796, 0.24489795918367346, 0.24829931972789115, 0.22448979591836735, 0.22108843537414966, 0.16326530612244897, 0.1598639455782313, 0.13945578231292516, 0.10204081632653061, 0.12244897959183673, 0.1054421768707483, 0.16326530612244897, 0.11224489795918367, 0.09183673469387756, 0.06802721088435375, 0.047619047619047616, 0.05442176870748299, 0.05782312925170068, 0.05102040816326531, 0.05102040816326531, 0.05102040816326531, 0.05102040816326531, 0.047619047619047616, 0.047619047619047616, 0.9013605442176871, 0.9013605442176871, 0.8707482993197279, 0.061224489795918366, 0.04421768707482993, 0.05442176870748299, 0.04081632653061224, 0.04081632653061224, 0.04081632653061224, 0.04081632653061224, 0.04081632653061224, 0.04081632653061224, 0.04081632653061224, 0.04081632653061224, 0.05102040816326531, 0.05442176870748299, 0.07482993197278912, 0.11224489795918367, 0.09863945578231292, 0.1054421768707483, 0.0782312925170068, 0.06802721088435375, 0.2789115646258503, 0.23129251700680273, 0.05442176870748299, 0.04081632653061224, 0.04081632653061224, 0.04081632653061224, 0.04081632653061224, 0.04081632653061224, 0.04081632653061224, 0.04081632653061224, 0.04081632653061224, 0.04421768707482993, 0.04421768707482993, 0.04081632653061224, 0.04081632653061224, 0.03741496598639456, 0.03741496598639456, 0.04081632653061224, 0.03741496598639456, 0.935374149659864, 0.047619047619047616, 0.047619047619047616, 0.05102040816326531, 0.047619047619047616, 0.047619047619047616, 0.047619047619047616, 0.047619047619047616, 0.05102040816326531, 0.9387755102040817, 0.8027210884353742, 0.16666666666666666, 0.06802721088435375, 0.06462585034013606, 0.05442176870748299, 0.047619047619047616, 0.04421768707482993, 0.04421768707482993, 0.04421768707482993, 0.04421768707482993, 0.04421768707482993, 0.04421768707482993, 0.047619047619047616, 0.04421768707482993, 0.05102040816326531, 0.047619047619047616, 0.061224489795918366, 0.05782312925170068, 0.04081632653061224, 0.04081632653061224, 0.04081632653061224, 0.04421768707482993, 0.04081632653061224, 0.03741496598639456, 0.04081632653061224, 0.24489795918367346, 0.25510204081632654, 0.24829931972789115, 0.9421768707482994, 0.9421768707482994, 0.282312925170068, 0.23129251700680273, 0.8877551020408163, 0.891156462585034, 0.9285714285714286, 0.935374149659864, 0.9421768707482994, 0.9319727891156463, 0.8945578231292517, 0.891156462585034, 0.8877551020408163, 0.04421768707482993, 0.04421768707482993, 0.04081632653061224, 0.04081632653061224, 0.04081632653061224, 0.04081632653061224, 0.04081632653061224, 0.04081632653061224, 0.04081632653061224, 0.04081632653061224, 0.04081632653061224, 0.04081632653061224, 0.04421768707482993, 0.04421768707482993, 0.04421768707482993, 0.04421768707482993, 0.04421768707482993, 0.04421768707482993, 0.04421768707482993, 0.04421768707482993, 0.04421768707482993, 0.04421768707482993, 0.04421768707482993, 0.04421768707482993, 0.04421768707482993, 0.04421768707482993, 0.04421768707482993, 0.04421768707482993, 0.04421768707482993, 0.04421768707482993, 0.04421768707482993, 0.04421768707482993, 0.04421768707482993, 0.04421768707482993, 0.04421768707482993, 0.04421768707482993, 0.04421768707482993, 0.04421768707482993, 0.04421768707482993, 0.047619047619047616, 0.05442176870748299, 0.07482993197278912, 0.10884353741496598, 0.14965986394557823, 0.3945578231292517], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Peptidase_Prp.gap.json b/pfam_gap_rates/Peptidase_Prp.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..9faecbd018f2271f14ba90931b4218d38a794328
--- /dev/null
+++ b/pfam_gap_rates/Peptidase_Prp.gap.json
@@ -0,0 +1 @@
+{"family": "Peptidase_Prp", "n_seqs": 602, "length": 108, "gap_rates": [0.08139534883720931, 0.07475083056478406, 0.07308970099667775, 0.0681063122923588, 0.061461794019933555, 0.06478405315614617, 0.07308970099667775, 0.06312292358803986, 0.06312292358803986, 0.5132890365448505, 0.08305647840531562, 0.07807308970099668, 0.0681063122923588, 0.061461794019933555, 0.04817275747508306, 0.023255813953488372, 0.02159468438538206, 0.019933554817275746, 0.009966777408637873, 0.009966777408637873, 0.008305647840531562, 0.008305647840531562, 0.008305647840531562, 0.009966777408637873, 0.011627906976744186, 0.014950166112956811, 0.024916943521594685, 0.014950166112956811, 0.009966777408637873, 0.013289036544850499, 0.008305647840531562, 0.0033222591362126247, 0.0033222591362126247, 0.0016611295681063123, 0.0016611295681063123, 0.0016611295681063123, 0.0016611295681063123, 0.0016611295681063123, 0.0016611295681063123, 0.0016611295681063123, 0.0016611295681063123, 0.0016611295681063123, 0.0016611295681063123, 0.0016611295681063123, 0.0016611295681063123, 0.0016611295681063123, 0.0033222591362126247, 0.0033222591362126247, 0.0033222591362126247, 0.0049833887043189366, 0.9485049833887044, 0.024916943521594685, 0.02159468438538206, 0.019933554817275746, 0.018272425249169437, 0.019933554817275746, 0.016611295681063124, 0.03156146179401993, 0.016611295681063124, 0.02159468438538206, 0.0033222591362126247, 0.014950166112956811, 0.018272425249169437, 0.026578073089700997, 0.07308970099667775, 0.24916943521594684, 0.4568106312292359, 0.6644518272425249, 0.8737541528239202, 0.7508305647840532, 0.5581395348837209, 0.2857142857142857, 0.15448504983388706, 0.044850498338870434, 0.02159468438538206, 0.014950166112956811, 0.013289036544850499, 0.0049833887043189366, 0.006644518272425249, 0.0049833887043189366, 0.0049833887043189366, 0.0049833887043189366, 0.0049833887043189366, 0.0049833887043189366, 0.0049833887043189366, 0.0049833887043189366, 0.0049833887043189366, 0.0049833887043189366, 0.0049833887043189366, 0.0049833887043189366, 0.0049833887043189366, 0.0049833887043189366, 0.0049833887043189366, 0.0049833887043189366, 0.0049833887043189366, 0.0049833887043189366, 0.0049833887043189366, 0.0049833887043189366, 0.0049833887043189366, 0.006644518272425249, 0.009966777408637873, 0.013289036544850499, 0.024916943521594685, 0.029900332225913623, 0.04318936877076412, 0.07807308970099668, 0.16279069767441862, 0.6295681063122923], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Peptidase_S15.gap.json b/pfam_gap_rates/Peptidase_S15.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..5aba65360e929e01d7d828cb58e95feea290d0ee
--- /dev/null
+++ b/pfam_gap_rates/Peptidase_S15.gap.json
@@ -0,0 +1 @@
+{"family": "Peptidase_S15", "n_seqs": 1794, "length": 379, "gap_rates": [0.44704570791527315, 0.32887402452619846, 0.9292084726867336, 0.9253065774804905, 0.2931995540691193, 0.27034559643255296, 0.23411371237458195, 0.22519509476031216, 0.22129319955406912, 0.21850613154960982, 0.21181716833890746, 0.1794871794871795, 0.1750278706800446, 0.16833890746934224, 0.8835005574136009, 0.9292084726867336, 0.7324414715719063, 0.5819397993311036, 0.4319955406911929, 0.18450390189520624, 0.1588628762541806, 0.15496098104793757, 0.14715719063545152, 0.14102564102564102, 0.13935340022296544, 0.13712374581939799, 0.1326644370122631, 0.12931995540691194, 0.12931995540691194, 0.12931995540691194, 0.13154960981047936, 0.12764771460423635, 0.12597547380156077, 0.1254180602006689, 0.12597547380156077, 0.9214046822742475, 0.8756967670011149, 0.13656633221850614, 0.25808249721293197, 0.3411371237458194, 0.5490523968784838, 0.3216276477146042, 0.2508361204013378, 0.1878483835005574, 0.1605351170568562, 0.15105908584169453, 0.14938684503901895, 0.19453734671125975, 0.1633221850613155, 0.16443701226309923, 0.23244147157190637, 0.3088071348940914, 0.4531772575250836, 0.6744704570791528, 0.6978818283166109, 0.6806020066889632, 0.6666666666666666, 0.612597547380156, 0.4080267558528428, 0.7101449275362319, 0.7168338907469343, 0.7318840579710145, 0.7558528428093646, 0.7681159420289855, 0.7859531772575251, 0.8383500557413601, 0.8573021181716833, 0.8762541806020067, 0.8940914158305463, 0.9035674470457079, 0.9136008918617614, 0.9264214046822743, 0.9303232998885173, 0.9325529542920847, 0.9336677814938684, 0.935340022296544, 0.9442586399108138, 0.9481605351170569, 0.9492753623188406, 0.9459308807134894, 0.9370122630992196, 0.9342251950947603, 0.9336677814938684, 0.9319955406911928, 0.927536231884058, 0.9214046822742475, 0.9091415830546266, 0.8985507246376812, 0.8918617614269788, 0.8706800445930881, 0.8511705685618729, 0.8311036789297659, 0.7731326644370122, 0.7636566332218506, 0.7452619843924192, 0.7229654403567447, 0.7123745819397993, 0.70958751393534, 0.051839464882943144, 0.050724637681159424, 0.04793756967670011, 0.043478260869565216, 0.04403567447045708, 0.04292084726867335, 0.04180602006688963, 0.04124860646599777, 0.04013377926421405, 0.03901895206243032, 0.038461538461538464, 0.0379041248606466, 0.037346711259754736, 0.037346711259754736, 0.037346711259754736, 0.0379041248606466, 0.038461538461538464, 0.037346711259754736, 0.037346711259754736, 0.038461538461538464, 0.03678929765886288, 0.037346711259754736, 0.038461538461538464, 0.03901895206243032, 0.03901895206243032, 0.2931995540691193, 0.7976588628762542, 0.8996655518394648, 0.9108138238573021, 0.9163879598662207, 0.9230769230769231, 0.9180602006688964, 0.9113712374581939, 0.9063545150501672, 0.8913043478260869, 0.6360089186176142, 0.045707915273132664, 0.042363433667781496, 0.04124860646599777, 0.039576365663322184, 0.0379041248606466, 0.03678929765886288, 0.037346711259754736, 0.03678929765886288, 0.03678929765886288, 0.036231884057971016, 0.036231884057971016, 0.03567447045707915, 0.03678929765886288, 0.03678929765886288, 0.03678929765886288, 0.038461538461538464, 0.0379041248606466, 0.8645484949832776, 0.8729096989966555, 0.8840579710144928, 0.9096989966555183, 0.9108138238573021, 0.9124860646599777, 0.9253065774804905, 0.9175027870680045, 0.9113712374581939, 0.9108138238573021, 0.9080267558528428, 0.8740245261984393, 0.8690078037904125, 0.8617614269788183, 0.0451505016722408, 0.689520624303233, 0.05016722408026756, 0.048494983277591976, 0.05239687848383501, 0.052954292084726864, 0.051839464882943144, 0.044593088071348944, 0.04403567447045708, 0.043478260869565216, 0.042363433667781496, 0.04124860646599777, 0.04180602006688963, 0.04403567447045708, 0.04403567447045708, 0.044593088071348944, 0.04626532887402453, 0.04793756967670011, 0.049609810479375696, 0.05016722408026756, 0.051839464882943144, 0.056856187290969896, 0.059085841694537344, 0.06243032329988852, 0.06465997770345597, 0.06800445930880714, 0.3193979933110368, 0.09420289855072464, 0.08416945373467112, 0.08528428093645485, 0.08416945373467112, 0.08639910813823858, 0.08695652173913043, 0.0875139353400223, 0.0875139353400223, 0.08974358974358974, 0.09698996655518395, 0.10981047937569677, 0.10033444816053512, 0.10925306577480491, 0.12709030100334448, 0.11872909698996656, 0.11872909698996656, 0.120958751393534, 0.13099219620958752, 0.13600891861761427, 0.5128205128205128, 0.8193979933110368, 0.25195094760312153, 0.21181716833890746, 0.20958751393534003, 0.21850613154960982, 0.22240802675585283, 0.22742474916387959, 0.23076923076923078, 0.23522853957636566, 0.24303232998885171, 0.24860646599777034, 0.28818283166109254, 0.27647714604236345, 0.3132664437012263, 0.358974358974359, 0.2959866220735786, 0.2954292084726867, 0.9464882943143813, 0.9492753623188406, 0.9492753623188406, 0.9487179487179487, 0.9431438127090301, 0.6231884057971014, 0.5841694537346711, 0.5172798216276477, 0.38071348940914157, 0.36789297658862874, 0.3511705685618729, 0.34615384615384615, 0.3411371237458194, 0.3439241917502787, 0.34002229654403565, 0.3394648829431438, 0.34002229654403565, 0.34057971014492755, 0.342809364548495, 0.34782608695652173, 0.3500557413600892, 0.358974358974359, 0.36064659977703456, 0.4297658862876254, 0.40858416945373466, 0.3996655518394649, 0.4035674470457079, 0.45819397993311034, 0.44704570791527315, 0.4498327759197324, 0.4280936454849498, 0.7725752508361204, 0.7976588628762542, 0.8182831661092531, 0.8478260869565217, 0.8840579710144928, 0.9080267558528428, 0.9269788182831661, 0.9409141583054627, 0.9364548494983278, 0.9175027870680045, 0.8940914158305463, 0.8606465997770345, 0.8377926421404682, 0.8071348940914158, 0.7898550724637681, 0.7614269788182831, 0.5156075808249722, 0.5178372352285395, 0.5016722408026756, 0.4927536231884058, 0.4754738015607581, 0.3874024526198439, 0.3835005574136009, 0.37681159420289856, 0.3695652173913043, 0.3673355629877369, 0.3695652173913043, 0.36789297658862874, 0.37068004459308806, 0.3756967670011148, 0.37848383500557414, 0.8706800445930881, 0.8924191750278707, 0.9470457079152731, 0.9186176142697882, 0.8784838350055741, 0.8528428093645485, 0.6120401337792643, 0.5590858416945373, 0.5306577480490524, 0.49944258639910816, 0.48940914158305465, 0.48773690078037907, 0.4855072463768116, 0.47435897435897434, 0.4654403567447046, 0.3673355629877369, 0.3450390189520624, 0.34002229654403565, 0.3366778149386845, 0.3377926421404682, 0.3377926421404682, 0.3372352285395764, 0.3355629877369008, 0.3350055741360089, 0.3355629877369008, 0.33612040133779264, 0.3377926421404682, 0.3450390189520624, 0.3500557413600892, 0.43812709030100333, 0.4331103678929766, 0.3701226309921962, 0.9024526198439242, 0.9308807134894092, 0.8924191750278707, 0.3500557413600892, 0.34615384615384615, 0.3439241917502787, 0.3377926421404682, 0.33835005574136007, 0.3372352285395764, 0.3366778149386845, 0.3366778149386845, 0.3372352285395764, 0.3377926421404682, 0.33835005574136007, 0.33835005574136007, 0.34225195094760313, 0.3433667781493868, 0.3500557413600892, 0.6516164994425864, 0.36510590858416947, 0.36454849498327757, 0.3745819397993311, 0.7865105908584169, 0.37681159420289856, 0.37848383500557414, 0.3801560758082497, 0.38071348940914157, 0.3835005574136009, 0.3851727982162765, 0.3862876254180602, 0.38684503901895206, 0.3890746934225195, 0.3935340022296544, 0.3974358974358974, 0.40022296544035674, 0.4013377926421405, 0.4136008918617614, 0.5412486064659978, 0.6471571906354515, 0.8578595317725752, 0.9431438127090301, 0.9442586399108138, 0.9236343366778149, 0.8037904124860646, 0.6276477146042363, 0.4169453734671126, 0.4197324414715719, 0.42028985507246375, 0.42196209587513933, 0.4269788182831661, 0.43701226309921964, 0.4442586399108138, 0.45707915273132665, 0.4593088071348941, 0.5139353400222966, 0.8500557413600892], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Peptidase_U4.gap.json b/pfam_gap_rates/Peptidase_U4.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..443ba39711ca24a9f7d22839bef5d95b2f388b7a
--- /dev/null
+++ b/pfam_gap_rates/Peptidase_U4.gap.json
@@ -0,0 +1 @@
+{"family": "Peptidase_U4", "n_seqs": 387, "length": 315, "gap_rates": [0.5090439276485789, 0.13178294573643412, 0.1111111111111111, 0.10852713178294573, 0.10077519379844961, 0.10077519379844961, 0.09560723514211886, 0.09043927648578812, 0.08785529715762273, 0.08527131782945736, 0.08527131782945736, 0.08527131782945736, 0.08527131782945736, 0.07493540051679587, 0.07493540051679587, 0.07493540051679587, 0.07493540051679587, 0.07493540051679587, 0.07493540051679587, 0.07493540051679587, 0.07493540051679587, 0.07493540051679587, 0.07493540051679587, 0.07493540051679587, 0.07493540051679587, 0.07493540051679587, 0.07493540051679587, 0.07493540051679587, 0.07493540051679587, 0.07493540051679587, 0.07235142118863049, 0.07235142118863049, 0.07493540051679587, 0.07235142118863049, 0.06201550387596899, 0.06201550387596899, 0.059431524547803614, 0.059431524547803614, 0.059431524547803614, 0.059431524547803614, 0.059431524547803614, 0.059431524547803614, 0.059431524547803614, 0.059431524547803614, 0.059431524547803614, 0.5167958656330749, 0.06459948320413436, 0.05167958656330749, 0.1731266149870801, 0.07493540051679587, 0.06718346253229975, 0.06459948320413436, 0.09560723514211886, 0.4806201550387597, 0.21963824289405684, 0.1731266149870801, 0.5762273901808785, 0.08785529715762273, 0.06976744186046512, 0.05426356589147287, 0.05167958656330749, 0.05167958656330749, 0.04909560723514212, 0.04392764857881137, 0.04392764857881137, 0.046511627906976744, 0.04392764857881137, 0.04392764857881137, 0.04392764857881137, 0.04392764857881137, 0.04392764857881137, 0.03875968992248062, 0.03875968992248062, 0.03617571059431524, 0.041343669250646, 0.05167958656330749, 0.041343669250646, 0.041343669250646, 0.04909560723514212, 0.04392764857881137, 0.056847545219638244, 0.12144702842377261, 0.10077519379844961, 0.05167958656330749, 0.04392764857881137, 0.03875968992248062, 0.03359173126614987, 0.03359173126614987, 0.03359173126614987, 0.03359173126614987, 0.03359173126614987, 0.03359173126614987, 0.03617571059431524, 0.03617571059431524, 0.03617571059431524, 0.03617571059431524, 0.03359173126614987, 0.03359173126614987, 0.03359173126614987, 0.03359173126614987, 0.03359173126614987, 0.03359173126614987, 0.03359173126614987, 0.03359173126614987, 0.03875968992248062, 0.03875968992248062, 0.041343669250646, 0.03875968992248062, 0.4315245478036176, 0.05426356589147287, 0.6356589147286822, 0.7855297157622739, 0.8630490956072352, 0.9121447028423773, 0.9302325581395349, 0.8863049095607235, 0.834625322997416, 0.6744186046511628, 0.6098191214470284, 0.12403100775193798, 0.4496124031007752, 0.4625322997416021, 0.4599483204134367, 0.09819121447028424, 0.25064599483204136, 0.31007751937984496, 0.3488372093023256, 0.4108527131782946, 0.48320413436692505, 0.5788113695090439, 0.7390180878552972, 0.8010335917312662, 0.8423772609819121, 0.9483204134366925, 0.8682170542635659, 0.8217054263565892, 0.772609819121447, 0.6098191214470284, 0.524547803617571, 0.4496124031007752, 0.3772609819121447, 0.32558139534883723, 0.27648578811369506, 0.24031007751937986, 0.04392764857881137, 0.04909560723514212, 0.04392764857881137, 0.041343669250646, 0.03617571059431524, 0.03359173126614987, 0.03359173126614987, 0.03359173126614987, 0.03617571059431524, 0.03359173126614987, 0.031007751937984496, 0.031007751937984496, 0.03359173126614987, 0.03617571059431524, 0.03875968992248062, 0.046511627906976744, 0.1731266149870801, 0.11627906976744186, 0.12403100775193798, 0.09302325581395349, 0.07751937984496124, 0.06201550387596899, 0.07751937984496124, 0.059431524547803614, 0.041343669250646, 0.03617571059431524, 0.03875968992248062, 0.03359173126614987, 0.028423772609819122, 0.025839793281653745, 0.025839793281653745, 0.028423772609819122, 0.028423772609819122, 0.028423772609819122, 0.03359173126614987, 0.025839793281653745, 0.023255813953488372, 0.023255813953488372, 0.025839793281653745, 0.028423772609819122, 0.028423772609819122, 0.028423772609819122, 0.025839793281653745, 0.025839793281653745, 0.023255813953488372, 0.020671834625323, 0.023255813953488372, 0.023255813953488372, 0.020671834625323, 0.020671834625323, 0.020671834625323, 0.020671834625323, 0.020671834625323, 0.020671834625323, 0.020671834625323, 0.031007751937984496, 0.031007751937984496, 0.023255813953488372, 0.05426356589147287, 0.059431524547803614, 0.031007751937984496, 0.025839793281653745, 0.025839793281653745, 0.025839793281653745, 0.023255813953488372, 0.020671834625323, 0.020671834625323, 0.023255813953488372, 0.023255813953488372, 0.023255813953488372, 0.023255813953488372, 0.028423772609819122, 0.046511627906976744, 0.046511627906976744, 0.046511627906976744, 0.04392764857881137, 0.06459948320413436, 0.06459948320413436, 0.1937984496124031, 0.1731266149870801, 0.18087855297157623, 0.2041343669250646, 0.2041343669250646, 0.1937984496124031, 0.21963824289405684, 0.6873385012919897, 0.7390180878552972, 0.6666666666666666, 0.6511627906976745, 0.5762273901808785, 0.5167958656330749, 0.5012919896640827, 0.49612403100775193, 0.46511627906976744, 0.46511627906976744, 0.4599483204134367, 0.4470284237726098, 0.4702842377260982, 0.7803617571059431, 0.42377260981912146, 0.4160206718346253, 0.40310077519379844, 0.3953488372093023, 0.36175710594315247, 0.35400516795865633, 0.330749354005168, 0.2971576227390181, 0.26356589147286824, 0.2454780361757106, 0.2248062015503876, 0.21188630490956073, 0.10077519379844961, 0.06201550387596899, 0.059431524547803614, 0.059431524547803614, 0.059431524547803614, 0.059431524547803614, 0.059431524547803614, 0.06201550387596899, 0.06201550387596899, 0.06976744186046512, 0.34366925064599485, 0.06201550387596899, 0.06201550387596899, 0.059431524547803614, 0.059431524547803614, 0.059431524547803614, 0.059431524547803614, 0.06201550387596899, 0.06201550387596899, 0.06201550387596899, 0.06976744186046512, 0.06201550387596899, 0.06201550387596899, 0.06718346253229975, 0.06718346253229975, 0.06976744186046512, 0.12144702842377261, 0.9483204134366925, 0.3049095607235142, 0.26098191214470284, 0.22997416020671835, 0.2144702842377261, 0.1111111111111111, 0.08527131782945736, 0.08527131782945736, 0.08785529715762273, 0.08785529715762273, 0.08785529715762273, 0.08785529715762273, 0.09043927648578812, 0.09043927648578812, 0.09560723514211886, 0.09560723514211886, 0.1524547803617571, 0.1524547803617571, 0.15762273901808785, 0.14470284237726097, 0.25064599483204136, 0.21963824289405684, 0.17829457364341086, 0.16279069767441862, 0.165374677002584, 0.16279069767441862, 0.165374677002584, 0.16795865633074936, 0.18087855297157623, 0.18863049095607234, 0.24031007751937986, 0.32041343669250644, 0.5813953488372093], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Peroxin-3.gap.json b/pfam_gap_rates/Peroxin-3.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..48bc5840437ce07066f8006ba568d8e57c90cf3f
--- /dev/null
+++ b/pfam_gap_rates/Peroxin-3.gap.json
@@ -0,0 +1 @@
+{"family": "Peroxin-3", "n_seqs": 335, "length": 621, "gap_rates": [0.7761194029850746, 0.49850746268656715, 0.48955223880597015, 0.48656716417910445, 0.4835820895522388, 0.48059701492537316, 0.47761194029850745, 0.47761194029850745, 0.47761194029850745, 0.47761194029850745, 0.4746268656716418, 0.4746268656716418, 0.4746268656716418, 0.47761194029850745, 0.4746268656716418, 0.46865671641791046, 0.46865671641791046, 0.46567164179104475, 0.46567164179104475, 0.46567164179104475, 0.46865671641791046, 0.46567164179104475, 0.46567164179104475, 0.46865671641791046, 0.46865671641791046, 0.46567164179104475, 0.46567164179104475, 0.46865671641791046, 0.46567164179104475, 0.46567164179104475, 0.47761194029850745, 0.4746268656716418, 0.4746268656716418, 0.4746268656716418, 0.46567164179104475, 0.46567164179104475, 0.46567164179104475, 0.46567164179104475, 0.46567164179104475, 0.46567164179104475, 0.46567164179104475, 0.46865671641791046, 0.46865671641791046, 0.46865671641791046, 0.4716417910447761, 0.46865671641791046, 0.46567164179104475, 0.4626865671641791, 0.4626865671641791, 0.4626865671641791, 0.4626865671641791, 0.4626865671641791, 0.4626865671641791, 0.4597014925373134, 0.4597014925373134, 0.4597014925373134, 0.4597014925373134, 0.4597014925373134, 0.4597014925373134, 0.4597014925373134, 0.4597014925373134, 0.4597014925373134, 0.4597014925373134, 0.45671641791044776, 0.45671641791044776, 0.45671641791044776, 0.45671641791044776, 0.45671641791044776, 0.45671641791044776, 0.45671641791044776, 0.45671641791044776, 0.45671641791044776, 0.45671641791044776, 0.45671641791044776, 0.45671641791044776, 0.45671641791044776, 0.45671641791044776, 0.45671641791044776, 0.45671641791044776, 0.45671641791044776, 0.45671641791044776, 0.45671641791044776, 0.45671641791044776, 0.45671641791044776, 0.45671641791044776, 0.45671641791044776, 0.45671641791044776, 0.45671641791044776, 0.45671641791044776, 0.48059701492537316, 0.5253731343283582, 0.5402985074626866, 0.564179104477612, 0.573134328358209, 0.5940298507462687, 0.6059701492537314, 0.6208955223880597, 0.6417910447761194, 0.6567164179104478, 0.6686567164179105, 0.6686567164179105, 0.7044776119402985, 0.7074626865671642, 0.7522388059701492, 0.7492537313432835, 0.7402985074626866, 0.8955223880597015, 0.8985074626865671, 0.9104477611940298, 0.9194029850746268, 0.9253731343283582, 0.9313432835820895, 0.9432835820895522, 0.9462686567164179, 0.9462686567164179, 0.9462686567164179, 0.9432835820895522, 0.9313432835820895, 0.9223880597014925, 0.9164179104477612, 0.8985074626865671, 0.8985074626865671, 0.8776119402985074, 0.7582089552238805, 0.8059701492537313, 0.7820895522388059, 0.7791044776119403, 0.764179104477612, 0.764179104477612, 0.764179104477612, 0.764179104477612, 0.764179104477612, 0.6955223880597015, 0.8388059701492537, 0.844776119402985, 0.9014925373134328, 0.9044776119402985, 0.9074626865671642, 0.9074626865671642, 0.9074626865671642, 0.9104477611940298, 0.9104477611940298, 0.9134328358208955, 0.9164179104477612, 0.9223880597014925, 0.9223880597014925, 0.9253731343283582, 0.9253731343283582, 0.9253731343283582, 0.9253731343283582, 0.9283582089552239, 0.9313432835820895, 0.9343283582089552, 0.9373134328358209, 0.9402985074626866, 0.9402985074626866, 0.9462686567164179, 0.9432835820895522, 0.9402985074626866, 0.9373134328358209, 0.9373134328358209, 0.9313432835820895, 0.9283582089552239, 0.9253731343283582, 0.9253731343283582, 0.9253731343283582, 0.9253731343283582, 0.9223880597014925, 0.9223880597014925, 0.9164179104477612, 0.9134328358208955, 0.9134328358208955, 0.9104477611940298, 0.9074626865671642, 0.9074626865671642, 0.9074626865671642, 0.9074626865671642, 0.9044776119402985, 0.9014925373134328, 0.8417910447761194, 0.835820895522388, 0.7731343283582089, 0.7671641791044777, 0.7492537313432835, 0.7223880597014926, 0.7074626865671642, 0.6985074626865672, 0.6985074626865672, 0.6925373134328359, 0.8388059701492537, 0.8059701492537313, 0.8, 0.6835820895522388, 0.6776119402985075, 0.6716417910447762, 0.6656716417910448, 0.6626865671641791, 0.6626865671641791, 0.6656716417910448, 0.6746268656716418, 0.6746268656716418, 0.6626865671641791, 0.6626865671641791, 0.6626865671641791, 0.6686567164179105, 0.6686567164179105, 0.6686567164179105, 0.6716417910447762, 0.6746268656716418, 0.6835820895522388, 0.6955223880597015, 0.7074626865671642, 0.7253731343283583, 0.7283582089552239, 0.7582089552238805, 0.755223880597015, 0.7701492537313432, 0.7761194029850746, 0.835820895522388, 0.8328358208955224, 0.8298507462686567, 0.8388059701492537, 0.7492537313432835, 0.8716417910447761, 0.8805970149253731, 0.8895522388059701, 0.9104477611940298, 0.9194029850746268, 0.9253731343283582, 0.9283582089552239, 0.9313432835820895, 0.9402985074626866, 0.9432835820895522, 0.9432835820895522, 0.9462686567164179, 0.9492537313432836, 0.9492537313432836, 0.9462686567164179, 0.9432835820895522, 0.9432835820895522, 0.9402985074626866, 0.9343283582089552, 0.9313432835820895, 0.9283582089552239, 0.9223880597014925, 0.9134328358208955, 0.8985074626865671, 0.8835820895522388, 0.8746268656716418, 0.8656716417910447, 0.7044776119402985, 0.6477611940298508, 0.591044776119403, 0.5313432835820896, 0.5104477611940299, 0.4955223880597015, 0.48059701492537316, 0.4417910447761194, 0.3970149253731343, 0.34626865671641793, 0.3194029850746269, 0.3074626865671642, 0.3074626865671642, 0.3044776119402985, 0.3044776119402985, 0.30149253731343284, 0.30149253731343284, 0.3044776119402985, 0.3044776119402985, 0.30149253731343284, 0.30149253731343284, 0.30149253731343284, 0.30149253731343284, 0.30149253731343284, 0.30149253731343284, 0.30149253731343284, 0.30149253731343284, 0.30149253731343284, 0.30149253731343284, 0.30149253731343284, 0.30149253731343284, 0.30149253731343284, 0.30149253731343284, 0.30149253731343284, 0.3044776119402985, 0.30149253731343284, 0.30149253731343284, 0.30149253731343284, 0.30149253731343284, 0.30149253731343284, 0.30149253731343284, 0.30149253731343284, 0.30149253731343284, 0.30149253731343284, 0.30149253731343284, 0.30149253731343284, 0.29850746268656714, 0.30149253731343284, 0.3044776119402985, 0.3373134328358209, 0.3492537313432836, 0.34626865671641793, 0.34328358208955223, 0.3492537313432836, 0.34626865671641793, 0.35522388059701493, 0.3611940298507463, 0.3701492537313433, 0.37910447761194027, 0.3880597014925373, 0.3880597014925373, 0.3880597014925373, 0.3970149253731343, 0.4, 0.4, 0.4955223880597015, 0.6567164179104478, 0.7074626865671642, 0.817910447761194, 0.8417910447761194, 0.8417910447761194, 0.8567164179104477, 0.8567164179104477, 0.9313432835820895, 0.9432835820895522, 0.8955223880597015, 0.8597014925373134, 0.8835820895522388, 0.8776119402985074, 0.8477611940298507, 0.6686567164179105, 0.6746268656716418, 0.6507462686567164, 0.6477611940298508, 0.6447761194029851, 0.6358208955223881, 0.6537313432835821, 0.6537313432835821, 0.6835820895522388, 0.6776119402985075, 0.8925373134328358, 0.9104477611940298, 0.9253731343283582, 0.9313432835820895, 0.9402985074626866, 0.9492537313432836, 0.9402985074626866, 0.9283582089552239, 0.9134328358208955, 0.9014925373134328, 0.8776119402985074, 0.6149253731343284, 0.608955223880597, 0.591044776119403, 0.5611940298507463, 0.5194029850746269, 0.48955223880597015, 0.43582089552238806, 0.41194029850746267, 0.373134328358209, 0.36716417910447763, 0.3701492537313433, 0.36716417910447763, 0.3492537313432836, 0.34626865671641793, 0.34626865671641793, 0.34328358208955223, 0.34328358208955223, 0.34626865671641793, 0.3492537313432836, 0.3522388059701492, 0.3492537313432836, 0.3492537313432836, 0.34626865671641793, 0.34328358208955223, 0.34328358208955223, 0.34328358208955223, 0.34328358208955223, 0.3402985074626866, 0.3402985074626866, 0.3402985074626866, 0.3402985074626866, 0.3402985074626866, 0.3402985074626866, 0.3402985074626866, 0.3402985074626866, 0.3402985074626866, 0.3402985074626866, 0.3402985074626866, 0.3402985074626866, 0.3402985074626866, 0.3373134328358209, 0.3402985074626866, 0.3402985074626866, 0.3402985074626866, 0.3402985074626866, 0.3402985074626866, 0.3402985074626866, 0.3402985074626866, 0.3402985074626866, 0.3402985074626866, 0.3402985074626866, 0.3402985074626866, 0.34328358208955223, 0.34328358208955223, 0.34328358208955223, 0.34328358208955223, 0.34328358208955223, 0.34328358208955223, 0.34328358208955223, 0.34626865671641793, 0.34626865671641793, 0.34328358208955223, 0.34328358208955223, 0.34328358208955223, 0.34328358208955223, 0.34328358208955223, 0.34328358208955223, 0.34626865671641793, 0.3492537313432836, 0.3492537313432836, 0.3492537313432836, 0.3492537313432836, 0.3492537313432836, 0.4626865671641791, 0.4746268656716418, 0.5164179104477612, 0.6298507462686567, 0.8298507462686567, 0.9074626865671642, 0.9492537313432836, 0.9194029850746268, 0.9044776119402985, 0.8208955223880597, 0.5283582089552239, 0.42686567164179107, 0.373134328358209, 0.3582089552238806, 0.3492537313432836, 0.3522388059701492, 0.34626865671641793, 0.3492537313432836, 0.34626865671641793, 0.34626865671641793, 0.34626865671641793, 0.35522388059701493, 0.7970149253731343, 0.3850746268656716, 0.4507462686567164, 0.4388059701492537, 0.408955223880597, 0.4, 0.4298507462686567, 0.4208955223880597, 0.4298507462686567, 0.41492537313432837, 0.40298507462686567, 0.4, 0.3940298507462687, 0.4, 0.4, 0.41194029850746267, 0.7432835820895523, 0.808955223880597, 0.8567164179104477, 0.8955223880597015, 0.9074626865671642, 0.9164179104477612, 0.9313432835820895, 0.9402985074626866, 0.9462686567164179, 0.9373134328358209, 0.9194029850746268, 0.9104477611940298, 0.9014925373134328, 0.8865671641791045, 0.835820895522388, 0.7880597014925373, 0.7104477611940299, 0.6626865671641791, 0.591044776119403, 0.5134328358208955, 0.47761194029850745, 0.4417910447761194, 0.3880597014925373, 0.36716417910447763, 0.35522388059701493, 0.34626865671641793, 0.3402985074626866, 0.3402985074626866, 0.3402985074626866, 0.33432835820895523, 0.33134328358208953, 0.3283582089552239, 0.3283582089552239, 0.3283582089552239, 0.3283582089552239, 0.3283582089552239, 0.3283582089552239, 0.3283582089552239, 0.3283582089552239, 0.33134328358208953, 0.33134328358208953, 0.33432835820895523, 0.3373134328358209, 0.3402985074626866, 0.3402985074626866, 0.3373134328358209, 0.3373134328358209, 0.3373134328358209, 0.3373134328358209, 0.3373134328358209, 0.3373134328358209, 0.3373134328358209, 0.3373134328358209, 0.3373134328358209, 0.3373134328358209, 0.3373134328358209, 0.3373134328358209, 0.3373134328358209, 0.3373134328358209, 0.3373134328358209, 0.3373134328358209, 0.3402985074626866, 0.3402985074626866, 0.34328358208955223, 0.34626865671641793, 0.34626865671641793, 0.3492537313432836, 0.37910447761194027, 0.382089552238806, 0.3880597014925373, 0.3850746268656716, 0.4059701492537313, 0.4208955223880597, 0.45671641791044776, 0.573134328358209, 0.5880597014925373, 0.5880597014925373, 0.5850746268656717, 0.5880597014925373, 0.5761194029850746, 0.6298507462686567, 0.7373134328358208, 0.746268656716418, 0.7164179104477612, 0.6746268656716418, 0.8328358208955224, 0.8567164179104477, 0.8776119402985074, 0.9044776119402985, 0.9194029850746268, 0.9343283582089552, 0.9492537313432836, 0.9492537313432836, 0.9432835820895522, 0.9223880597014925, 0.9074626865671642, 0.8865671641791045, 0.8716417910447761, 0.8388059701492537, 0.8328358208955224, 0.591044776119403, 0.5343283582089552, 0.48955223880597015, 0.4716417910447761, 0.4507462686567164, 0.4059701492537313, 0.36716417910447763, 0.3641791044776119, 0.3641791044776119, 0.3641791044776119, 0.3641791044776119, 0.3641791044776119, 0.36716417910447763, 0.3641791044776119, 0.3641791044776119, 0.3641791044776119, 0.3641791044776119, 0.3641791044776119, 0.36716417910447763, 0.3701492537313433, 0.373134328358209, 0.37910447761194027, 0.37910447761194027, 0.3761194029850746, 0.373134328358209, 0.373134328358209, 0.3701492537313433, 0.3701492537313433, 0.9223880597014925, 0.9462686567164179, 0.9373134328358209, 0.8388059701492537, 0.3880597014925373, 0.9432835820895522, 0.9313432835820895, 0.4059701492537313, 0.3850746268656716, 0.373134328358209, 0.373134328358209, 0.373134328358209, 0.373134328358209, 0.37910447761194027, 0.382089552238806, 0.382089552238806, 0.382089552238806, 0.3850746268656716, 0.3880597014925373, 0.3880597014925373, 0.3880597014925373, 0.3880597014925373, 0.39104477611940297, 0.39104477611940297, 0.3940298507462687, 0.4, 0.40298507462686567, 0.40298507462686567, 0.4059701492537313, 0.5313432835820896, 0.6119402985074627], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Pet127.gap.json b/pfam_gap_rates/Pet127.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ecd8b7166a80b0dd513d703f745d6b9887f9c999
--- /dev/null
+++ b/pfam_gap_rates/Pet127.gap.json
@@ -0,0 +1 @@
+{"family": "Pet127", "n_seqs": 144, "length": 329, "gap_rates": [0.06944444444444445, 0.06944444444444445, 0.06944444444444445, 0.06944444444444445, 0.06944444444444445, 0.06944444444444445, 0.06944444444444445, 0.06944444444444445, 0.06944444444444445, 0.06944444444444445, 0.06944444444444445, 0.06944444444444445, 0.0625, 0.0625, 0.0625, 0.0625, 0.0625, 0.0625, 0.0625, 0.0625, 0.0625, 0.0625, 0.0625, 0.0625, 0.0625, 0.0625, 0.0625, 0.0625, 0.0625, 0.0625, 0.0625, 0.0625, 0.0625, 0.0625, 0.0625, 0.0625, 0.0625, 0.0625, 0.0625, 0.0625, 0.0625, 0.0625, 0.0625, 0.0625, 0.0625, 0.0625, 0.0625, 0.1111111111111111, 0.10416666666666667, 0.10416666666666667, 0.06944444444444445, 0.06944444444444445, 0.06944444444444445, 0.125, 0.125, 0.13194444444444445, 0.9444444444444444, 0.9305555555555556, 0.06944444444444445, 0.0625, 0.05555555555555555, 0.05555555555555555, 0.05555555555555555, 0.05555555555555555, 0.9375, 0.05555555555555555, 0.05555555555555555, 0.05555555555555555, 0.05555555555555555, 0.05555555555555555, 0.04861111111111111, 0.041666666666666664, 0.041666666666666664, 0.041666666666666664, 0.041666666666666664, 0.041666666666666664, 0.041666666666666664, 0.034722222222222224, 0.9097222222222222, 0.034722222222222224, 0.875, 0.034722222222222224, 0.9027777777777778, 0.9305555555555556, 0.9444444444444444, 0.9375, 0.9027777777777778, 0.9027777777777778, 0.034722222222222224, 0.034722222222222224, 0.034722222222222224, 0.041666666666666664, 0.041666666666666664, 0.041666666666666664, 0.041666666666666664, 0.041666666666666664, 0.041666666666666664, 0.8125, 0.9166666666666666, 0.8541666666666666, 0.7430555555555556, 0.041666666666666664, 0.04861111111111111, 0.041666666666666664, 0.041666666666666664, 0.8194444444444444, 0.041666666666666664, 0.041666666666666664, 0.041666666666666664, 0.041666666666666664, 0.041666666666666664, 0.041666666666666664, 0.041666666666666664, 0.04861111111111111, 0.041666666666666664, 0.041666666666666664, 0.041666666666666664, 0.041666666666666664, 0.041666666666666664, 0.041666666666666664, 0.041666666666666664, 0.041666666666666664, 0.041666666666666664, 0.041666666666666664, 0.041666666666666664, 0.020833333333333332, 0.020833333333333332, 0.020833333333333332, 0.020833333333333332, 0.9097222222222222, 0.027777777777777776, 0.027777777777777776, 0.027777777777777776, 0.041666666666666664, 0.041666666666666664, 0.034722222222222224, 0.1875, 0.20833333333333334, 0.0625, 0.04861111111111111, 0.9444444444444444, 0.9305555555555556, 0.041666666666666664, 0.1111111111111111, 0.09027777777777778, 0.06944444444444445, 0.09027777777777778, 0.09027777777777778, 0.06944444444444445, 0.5208333333333334, 0.9305555555555556, 0.9097222222222222, 0.3541666666666667, 0.020833333333333332, 0.020833333333333332, 0.020833333333333332, 0.020833333333333332, 0.020833333333333332, 0.020833333333333332, 0.027777777777777776, 0.027777777777777776, 0.027777777777777776, 0.027777777777777776, 0.027777777777777776, 0.027777777777777776, 0.027777777777777776, 0.027777777777777776, 0.027777777777777776, 0.020833333333333332, 0.020833333333333332, 0.020833333333333332, 0.020833333333333332, 0.027777777777777776, 0.034722222222222224, 0.034722222222222224, 0.027777777777777776, 0.020833333333333332, 0.027777777777777776, 0.1388888888888889, 0.041666666666666664, 0.020833333333333332, 0.020833333333333332, 0.020833333333333332, 0.020833333333333332, 0.020833333333333332, 0.020833333333333332, 0.020833333333333332, 0.020833333333333332, 0.020833333333333332, 0.020833333333333332, 0.020833333333333332, 0.020833333333333332, 0.020833333333333332, 0.020833333333333332, 0.020833333333333332, 0.020833333333333332, 0.020833333333333332, 0.020833333333333332, 0.020833333333333332, 0.020833333333333332, 0.027777777777777776, 0.027777777777777776, 0.034722222222222224, 0.9444444444444444, 0.875, 0.027777777777777776, 0.020833333333333332, 0.020833333333333332, 0.020833333333333332, 0.020833333333333332, 0.020833333333333332, 0.020833333333333332, 0.020833333333333332, 0.027777777777777776, 0.027777777777777776, 0.027777777777777776, 0.027777777777777776, 0.034722222222222224, 0.034722222222222224, 0.027777777777777776, 0.027777777777777776, 0.027777777777777776, 0.027777777777777776, 0.027777777777777776, 0.027777777777777776, 0.027777777777777776, 0.027777777777777776, 0.027777777777777776, 0.027777777777777776, 0.027777777777777776, 0.027777777777777776, 0.027777777777777776, 0.027777777777777776, 0.027777777777777776, 0.027777777777777776, 0.027777777777777776, 0.027777777777777776, 0.027777777777777776, 0.034722222222222224, 0.034722222222222224, 0.034722222222222224, 0.034722222222222224, 0.034722222222222224, 0.034722222222222224, 0.041666666666666664, 0.041666666666666664, 0.041666666666666664, 0.041666666666666664, 0.041666666666666664, 0.041666666666666664, 0.041666666666666664, 0.041666666666666664, 0.041666666666666664, 0.041666666666666664, 0.041666666666666664, 0.034722222222222224, 0.034722222222222224, 0.034722222222222224, 0.034722222222222224, 0.034722222222222224, 0.041666666666666664, 0.041666666666666664, 0.041666666666666664, 0.041666666666666664, 0.041666666666666664, 0.041666666666666664, 0.041666666666666664, 0.041666666666666664, 0.041666666666666664, 0.041666666666666664, 0.041666666666666664, 0.041666666666666664, 0.041666666666666664, 0.041666666666666664, 0.8888888888888888, 0.8888888888888888, 0.8888888888888888, 0.8888888888888888, 0.8888888888888888, 0.8888888888888888, 0.8888888888888888, 0.8888888888888888, 0.9027777777777778, 0.9166666666666666, 0.9305555555555556, 0.9375, 0.9444444444444444, 0.9444444444444444, 0.9444444444444444, 0.9444444444444444, 0.9444444444444444, 0.9375, 0.9375, 0.9236111111111112, 0.9166666666666666, 0.8958333333333334, 0.8888888888888888, 0.8888888888888888, 0.8888888888888888, 0.8888888888888888, 0.8888888888888888, 0.8888888888888888, 0.8888888888888888, 0.8888888888888888, 0.4166666666666667, 0.4236111111111111, 0.4166666666666667, 0.6666666666666666, 0.4444444444444444, 0.2152777777777778, 0.10416666666666667, 0.04861111111111111, 0.041666666666666664, 0.041666666666666664, 0.041666666666666664, 0.04861111111111111, 0.04861111111111111, 0.04861111111111111, 0.04861111111111111, 0.04861111111111111, 0.04861111111111111, 0.04861111111111111, 0.04861111111111111, 0.04861111111111111, 0.04861111111111111, 0.05555555555555555, 0.0625, 0.13194444444444445, 0.4097222222222222], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Pet191_N.gap.json b/pfam_gap_rates/Pet191_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c4653c27e356ac02d26bcaf0e701e9dbe60255bf
--- /dev/null
+++ b/pfam_gap_rates/Pet191_N.gap.json
@@ -0,0 +1 @@
+{"family": "Pet191_N", "n_seqs": 227, "length": 69, "gap_rates": [0.8986784140969163, 0.21145374449339208, 0.048458149779735685, 0.04405286343612335, 0.04405286343612335, 0.039647577092511016, 0.039647577092511016, 0.03524229074889868, 0.03524229074889868, 0.03524229074889868, 0.03524229074889868, 0.03524229074889868, 0.03524229074889868, 0.03524229074889868, 0.03524229074889868, 0.030837004405286344, 0.030837004405286344, 0.030837004405286344, 0.030837004405286344, 0.022026431718061675, 0.022026431718061675, 0.01762114537444934, 0.004405286343612335, 0.004405286343612335, 0.1013215859030837, 0.00881057268722467, 0.004405286343612335, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.004405286343612335, 0.9295154185022027, 0.6035242290748899, 0.21585903083700442, 0.19823788546255505, 0.11894273127753303, 0.1013215859030837, 0.10572687224669604, 0.08370044052863436, 0.013215859030837005, 0.013215859030837005, 0.00881057268722467, 0.00881057268722467, 0.00881057268722467, 0.00881057268722467, 0.00881057268722467, 0.00881057268722467, 0.00881057268722467, 0.00881057268722467, 0.00881057268722467, 0.013215859030837005, 0.013215859030837005, 0.01762114537444934, 0.022026431718061675, 0.022026431718061675, 0.06167400881057269, 0.08370044052863436, 0.0881057268722467, 0.0881057268722467, 0.0881057268722467, 0.09251101321585903, 0.1013215859030837, 0.11894273127753303, 0.13656387665198239, 0.2599118942731278], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PhaG_MnhG_YufB.gap.json b/pfam_gap_rates/PhaG_MnhG_YufB.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..fb4f743f622f4dde182dd94d2f8a86f0abf86f49
--- /dev/null
+++ b/pfam_gap_rates/PhaG_MnhG_YufB.gap.json
@@ -0,0 +1 @@
+{"family": "PhaG_MnhG_YufB", "n_seqs": 909, "length": 87, "gap_rates": [0.16611661166116612, 0.05500550055005501, 0.0176017601760176, 0.0121012101210121, 0.0121012101210121, 0.0121012101210121, 0.011001100110011002, 0.009900990099009901, 0.007700770077007701, 0.007700770077007701, 0.006600660066006601, 0.006600660066006601, 0.006600660066006601, 0.006600660066006601, 0.006600660066006601, 0.005500550055005501, 0.005500550055005501, 0.005500550055005501, 0.0033003300330033004, 0.0033003300330033004, 0.0033003300330033004, 0.0033003300330033004, 0.0033003300330033004, 0.0033003300330033004, 0.0033003300330033004, 0.0022002200220022, 0.0022002200220022, 0.0033003300330033004, 0.0033003300330033004, 0.0033003300330033004, 0.0033003300330033004, 0.0033003300330033004, 0.0022002200220022, 0.0022002200220022, 0.0022002200220022, 0.0022002200220022, 0.0022002200220022, 0.0022002200220022, 0.0022002200220022, 0.0022002200220022, 0.0022002200220022, 0.0033003300330033004, 0.0033003300330033004, 0.0033003300330033004, 0.0033003300330033004, 0.0011001100110011, 0.0121012101210121, 0.005500550055005501, 0.12981298129812982, 0.04400440044004401, 0.052805280528052806, 0.11331133113311331, 0.014301430143014302, 0.5907590759075908, 0.8998899889988999, 0.9207920792079208, 0.944994499449945, 0.9086908690869087, 0.7810781078107811, 0.5698569856985699, 0.045104510451045104, 0.0407040704070407, 0.0011001100110011, 0.0011001100110011, 0.0011001100110011, 0.0011001100110011, 0.0011001100110011, 0.0011001100110011, 0.0011001100110011, 0.0011001100110011, 0.0011001100110011, 0.0011001100110011, 0.0011001100110011, 0.0011001100110011, 0.0011001100110011, 0.0011001100110011, 0.0011001100110011, 0.0011001100110011, 0.0011001100110011, 0.0011001100110011, 0.0011001100110011, 0.0011001100110011, 0.0022002200220022, 0.013201320132013201, 0.033003300330033, 0.16721672167216722, 0.5159515951595159], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Phage_BR0599.gap.json b/pfam_gap_rates/Phage_BR0599.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..0531db3ce1d533f80f0885d254c2facac6365a75
--- /dev/null
+++ b/pfam_gap_rates/Phage_BR0599.gap.json
@@ -0,0 +1 @@
+{"family": "Phage_BR0599", "n_seqs": 186, "length": 84, "gap_rates": [0.45698924731182794, 0.1827956989247312, 0.13440860215053763, 0.08602150537634409, 0.06989247311827956, 0.06451612903225806, 0.06451612903225806, 0.05913978494623656, 0.05913978494623656, 0.05913978494623656, 0.07526881720430108, 0.0913978494623656, 0.0967741935483871, 0.08064516129032258, 0.08064516129032258, 0.06451612903225806, 0.10215053763440861, 0.10752688172043011, 0.11290322580645161, 0.10752688172043011, 0.06989247311827956, 0.043010752688172046, 0.03225806451612903, 0.026881720430107527, 0.026881720430107527, 0.026881720430107527, 0.3870967741935484, 0.46236559139784944, 0.9032258064516129, 0.489247311827957, 0.43548387096774194, 0.026881720430107527, 0.026881720430107527, 0.026881720430107527, 0.021505376344086023, 0.021505376344086023, 0.021505376344086023, 0.021505376344086023, 0.021505376344086023, 0.021505376344086023, 0.021505376344086023, 0.03763440860215054, 0.13440860215053763, 0.04838709677419355, 0.021505376344086023, 0.021505376344086023, 0.021505376344086023, 0.021505376344086023, 0.021505376344086023, 0.021505376344086023, 0.021505376344086023, 0.021505376344086023, 0.016129032258064516, 0.016129032258064516, 0.005376344086021506, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.021505376344086023, 0.021505376344086023, 0.005376344086021506, 0.005376344086021506, 0.005376344086021506, 0.005376344086021506, 0.005376344086021506, 0.005376344086021506, 0.005376344086021506, 0.005376344086021506, 0.005376344086021506, 0.005376344086021506, 0.005376344086021506, 0.010752688172043012, 0.010752688172043012, 0.03763440860215054, 0.15053763440860216, 0.27956989247311825], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Phage_TAC_11.gap.json b/pfam_gap_rates/Phage_TAC_11.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f13a808d7f64c9103bc9f2672fbc91bf3ede5473
--- /dev/null
+++ b/pfam_gap_rates/Phage_TAC_11.gap.json
@@ -0,0 +1 @@
+{"family": "Phage_TAC_11", "n_seqs": 126, "length": 99, "gap_rates": [0.35714285714285715, 0.1984126984126984, 0.15873015873015872, 0.12698412698412698, 0.10317460317460317, 0.10317460317460317, 0.07142857142857142, 0.05555555555555555, 0.05555555555555555, 0.05555555555555555, 0.05555555555555555, 0.05555555555555555, 0.05555555555555555, 0.05555555555555555, 0.031746031746031744, 0.023809523809523808, 0.023809523809523808, 0.023809523809523808, 0.023809523809523808, 0.023809523809523808, 0.023809523809523808, 0.015873015873015872, 0.007936507936507936, 0.007936507936507936, 0.007936507936507936, 0.007936507936507936, 0.007936507936507936, 0.007936507936507936, 0.007936507936507936, 0.007936507936507936, 0.007936507936507936, 0.16666666666666666, 0.373015873015873, 0.007936507936507936, 0.007936507936507936, 0.007936507936507936, 0.007936507936507936, 0.007936507936507936, 0.007936507936507936, 0.0, 0.007936507936507936, 0.007936507936507936, 0.007936507936507936, 0.015873015873015872, 0.031746031746031744, 0.015873015873015872, 0.0, 0.0, 0.0, 0.0, 0.007936507936507936, 0.007936507936507936, 0.007936507936507936, 0.007936507936507936, 0.007936507936507936, 0.007936507936507936, 0.007936507936507936, 0.007936507936507936, 0.007936507936507936, 0.007936507936507936, 0.007936507936507936, 0.007936507936507936, 0.007936507936507936, 0.07936507936507936, 0.015873015873015872, 0.015873015873015872, 0.015873015873015872, 0.007936507936507936, 0.015873015873015872, 0.015873015873015872, 0.015873015873015872, 0.023809523809523808, 0.023809523809523808, 0.023809523809523808, 0.023809523809523808, 0.015873015873015872, 0.015873015873015872, 0.015873015873015872, 0.023809523809523808, 0.7857142857142857, 0.7777777777777778, 0.03968253968253968, 0.031746031746031744, 0.031746031746031744, 0.031746031746031744, 0.047619047619047616, 0.047619047619047616, 0.047619047619047616, 0.047619047619047616, 0.05555555555555555, 0.05555555555555555, 0.05555555555555555, 0.05555555555555555, 0.05555555555555555, 0.05555555555555555, 0.05555555555555555, 0.05555555555555555, 0.1746031746031746, 0.5873015873015873], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Phage_holin_4_1.gap.json b/pfam_gap_rates/Phage_holin_4_1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ecdb9a4052cf9a419d9e683d229dfcb1fe6dc375
--- /dev/null
+++ b/pfam_gap_rates/Phage_holin_4_1.gap.json
@@ -0,0 +1 @@
+{"family": "Phage_holin_4_1", "n_seqs": 426, "length": 136, "gap_rates": [0.3755868544600939, 0.25586854460093894, 0.2323943661971831, 0.19248826291079812, 0.17370892018779344, 0.16666666666666666, 0.15023474178403756, 0.13380281690140844, 0.1267605633802817, 0.09624413145539906, 0.06338028169014084, 0.0539906103286385, 0.03990610328638498, 0.03755868544600939, 0.03286384976525822, 0.03286384976525822, 0.03286384976525822, 0.03286384976525822, 0.03286384976525822, 0.03051643192488263, 0.028169014084507043, 0.025821596244131457, 0.025821596244131457, 0.018779342723004695, 0.018779342723004695, 0.018779342723004695, 0.018779342723004695, 0.02112676056338028, 0.02112676056338028, 0.02112676056338028, 0.018779342723004695, 0.018779342723004695, 0.02112676056338028, 0.8896713615023474, 0.9107981220657277, 0.9178403755868545, 0.9342723004694836, 0.92018779342723, 0.9178403755868545, 0.9014084507042254, 0.8568075117370892, 0.02112676056338028, 0.035211267605633804, 0.018779342723004695, 0.8779342723004695, 0.018779342723004695, 0.018779342723004695, 0.018779342723004695, 0.018779342723004695, 0.02112676056338028, 0.02112676056338028, 0.023474178403755867, 0.023474178403755867, 0.02112676056338028, 0.02112676056338028, 0.02112676056338028, 0.023474178403755867, 0.02112676056338028, 0.023474178403755867, 0.02112676056338028, 0.02112676056338028, 0.023474178403755867, 0.023474178403755867, 0.023474178403755867, 0.028169014084507043, 0.025821596244131457, 0.028169014084507043, 0.03051643192488263, 0.028169014084507043, 0.028169014084507043, 0.028169014084507043, 0.028169014084507043, 0.025821596244131457, 0.025821596244131457, 0.025821596244131457, 0.025821596244131457, 0.03755868544600939, 0.0539906103286385, 0.10093896713615023, 0.13849765258215962, 0.7464788732394366, 0.7793427230046949, 0.8145539906103286, 0.823943661971831, 0.9014084507042254, 0.9460093896713615, 0.8497652582159625, 0.8169014084507042, 0.8075117370892019, 0.7652582159624414, 0.7347417840375586, 0.2535211267605634, 0.8427230046948356, 0.9436619718309859, 0.7511737089201878, 0.023474178403755867, 0.02112676056338028, 0.018779342723004695, 0.02112676056338028, 0.018779342723004695, 0.01643192488262911, 0.01643192488262911, 0.01643192488262911, 0.02112676056338028, 0.02112676056338028, 0.02112676056338028, 0.02112676056338028, 0.02112676056338028, 0.02112676056338028, 0.02112676056338028, 0.02112676056338028, 0.02112676056338028, 0.02112676056338028, 0.02112676056338028, 0.02112676056338028, 0.02112676056338028, 0.035211267605633804, 0.04225352112676056, 0.04460093896713615, 0.06807511737089202, 0.056338028169014086, 0.05868544600938967, 0.06338028169014084, 0.0892018779342723, 0.07511737089201878, 0.07511737089201878, 0.07746478873239436, 0.08215962441314555, 0.0892018779342723, 0.09859154929577464, 0.1056338028169014, 0.12441314553990611, 0.15258215962441316, 0.19718309859154928, 0.31220657276995306, 0.7488262910798122], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Phage_holin_5_2.gap.json b/pfam_gap_rates/Phage_holin_5_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e32337b309b56352f82a32000ab95e1b938fee07
--- /dev/null
+++ b/pfam_gap_rates/Phage_holin_5_2.gap.json
@@ -0,0 +1 @@
+{"family": "Phage_holin_5_2", "n_seqs": 134, "length": 88, "gap_rates": [0.13432835820895522, 0.09701492537313433, 0.05223880597014925, 0.022388059701492536, 0.022388059701492536, 0.022388059701492536, 0.014925373134328358, 0.014925373134328358, 0.014925373134328358, 0.014925373134328358, 0.014925373134328358, 0.007462686567164179, 0.007462686567164179, 0.007462686567164179, 0.007462686567164179, 0.9477611940298507, 0.03731343283582089, 0.1044776119402985, 0.007462686567164179, 0.007462686567164179, 0.007462686567164179, 0.8656716417910447, 0.8805970149253731, 0.8582089552238806, 0.007462686567164179, 0.007462686567164179, 0.007462686567164179, 0.007462686567164179, 0.007462686567164179, 0.007462686567164179, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.5447761194029851, 0.5522388059701493, 0.5447761194029851, 0.5746268656716418, 0.5671641791044776, 0.5597014925373134, 0.8432835820895522, 0.5522388059701493, 0.746268656716418, 0.7611940298507462, 0.582089552238806, 0.5149253731343284, 0.5149253731343284, 0.48507462686567165, 0.5074626865671642, 0.4925373134328358, 0.48507462686567165, 0.0, 0.0, 0.014925373134328358, 0.27611940298507465, 0.23134328358208955, 0.5373134328358209, 0.5447761194029851, 0.8880597014925373, 0.5447761194029851, 0.5149253731343284, 0.007462686567164179, 0.007462686567164179, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.014925373134328358, 0.014925373134328358, 0.014925373134328358, 0.022388059701492536, 0.022388059701492536, 0.022388059701492536, 0.03731343283582089, 0.03731343283582089, 0.05223880597014925, 0.06716417910447761, 0.08955223880597014, 0.39552238805970147], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Phage_int_SAM_4.gap.json b/pfam_gap_rates/Phage_int_SAM_4.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b2ecd54816e5c8c05e9b8e6ee420c6ffa8e3d88d
--- /dev/null
+++ b/pfam_gap_rates/Phage_int_SAM_4.gap.json
@@ -0,0 +1 @@
+{"family": "Phage_int_SAM_4", "n_seqs": 1210, "length": 104, "gap_rates": [0.6933884297520662, 0.5338842975206611, 0.4024793388429752, 0.2991735537190083, 0.22231404958677686, 0.19504132231404958, 0.171900826446281, 0.1537190082644628, 0.1347107438016529, 0.11900826446280992, 0.10165289256198347, 0.9495867768595041, 0.07355371900826446, 0.05950413223140496, 0.04462809917355372, 0.032231404958677684, 0.02231404958677686, 0.01652892561983471, 0.015702479338842976, 0.015702479338842976, 0.014049586776859505, 0.014049586776859505, 0.014049586776859505, 0.013223140495867768, 0.012396694214876033, 0.012396694214876033, 0.012396694214876033, 0.011570247933884297, 0.010743801652892562, 0.010743801652892562, 0.010743801652892562, 0.009917355371900827, 0.00909090909090909, 0.00909090909090909, 0.00909090909090909, 0.9487603305785124, 0.4388429752066116, 0.024793388429752067, 0.78099173553719, 0.8512396694214877, 0.9016528925619834, 0.9206611570247933, 0.9363636363636364, 0.9446280991735537, 0.9487603305785124, 0.9404958677685951, 0.9297520661157025, 0.9148760330578513, 0.8801652892561983, 0.8190082644628099, 0.7669421487603306, 0.024793388429752067, 0.019834710743801654, 0.019834710743801654, 0.014049586776859505, 0.008264462809917356, 0.008264462809917356, 0.009917355371900827, 0.00743801652892562, 0.005785123966942148, 0.005785123966942148, 0.008264462809917356, 0.00909090909090909, 0.00909090909090909, 0.010743801652892562, 0.013223140495867768, 0.014049586776859505, 0.030578512396694214, 0.03305785123966942, 0.35206611570247937, 0.09834710743801653, 0.047933884297520664, 0.02809917355371901, 0.9223140495867769, 0.9272727272727272, 0.9297520661157025, 0.9256198347107438, 0.9132231404958677, 0.11652892561983472, 0.02975206611570248, 0.023966942148760332, 0.024793388429752067, 0.026446280991735537, 0.02727272727272727, 0.02727272727272727, 0.02809917355371901, 0.028925619834710745, 0.03305785123966942, 0.03305785123966942, 0.03553719008264463, 0.03636363636363636, 0.03884297520661157, 0.04132231404958678, 0.047107438016528926, 0.07190082644628099, 0.08429752066115702, 0.10826446280991736, 0.1322314049586777, 0.17603305785123968, 0.21983471074380165, 0.32892561983471075, 0.41074380165289254, 0.5396694214876033, 0.8520661157024794], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Phe_tRNA-synt_N.gap.json b/pfam_gap_rates/Phe_tRNA-synt_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..3bf63b89df025e871caeb7149409310bea430a15
--- /dev/null
+++ b/pfam_gap_rates/Phe_tRNA-synt_N.gap.json
@@ -0,0 +1 @@
+{"family": "Phe_tRNA-synt_N", "n_seqs": 2007, "length": 69, "gap_rates": [0.7987045341305431, 0.17090184354758345, 0.07972097658196313, 0.038365719980069754, 0.025909317389138018, 0.02192326856003986, 0.016442451420029897, 0.013951170901843548, 0.013951170901843548, 0.012954658694569009, 0.012954658694569009, 0.01245640259093174, 0.01245640259093174, 0.01245640259093174, 0.012954658694569009, 0.01046337817638266, 0.008968609865470852, 0.009466865969108122, 0.0064773293472845045, 0.004484304932735426, 0.004484304932735426, 0.003986048829098156, 0.003487792725460887, 0.0029895366218236174, 0.003487792725460887, 0.004982561036372696, 0.003487792725460887, 0.0029895366218236174, 0.002491280518186348, 0.002491280518186348, 0.002491280518186348, 0.000996512207274539, 0.000996512207274539, 0.000996512207274539, 0.000996512207274539, 0.000996512207274539, 0.000996512207274539, 0.000996512207274539, 0.0014947683109118087, 0.0014947683109118087, 0.0014947683109118087, 0.0014947683109118087, 0.0014947683109118087, 0.001993024414549078, 0.002491280518186348, 0.002491280518186348, 0.002491280518186348, 0.002491280518186348, 0.0029895366218236174, 0.003487792725460887, 0.003487792725460887, 0.004484304932735426, 0.004484304932735426, 0.004484304932735426, 0.006975585450921774, 0.01046337817638266, 0.01195814648729447, 0.017438963627304436, 0.023418036870951668, 0.03288490284005979, 0.04484304932735426, 0.057299451918286, 0.0802192326856004, 0.1096163428001993, 0.14050822122571002, 0.1699053313403089, 0.20378674638764324, 0.2610861983059293, 0.36472346786248133], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Phenol_MetA_deg.gap.json b/pfam_gap_rates/Phenol_MetA_deg.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..396229b941033fc055d43b22a84fe2d3d6c03067
--- /dev/null
+++ b/pfam_gap_rates/Phenol_MetA_deg.gap.json
@@ -0,0 +1 @@
+{"family": "Phenol_MetA_deg", "n_seqs": 519, "length": 312, "gap_rates": [0.7996146435452793, 0.6936416184971098, 0.674373795761079, 0.6551059730250481, 0.6165703275529865, 0.5934489402697495, 0.558766859344894, 0.5260115606936416, 0.4932562620423892, 0.4836223506743738, 0.4662813102119461, 0.45664739884393063, 0.44701348747591524, 0.5028901734104047, 0.3853564547206166, 0.37957610789980734, 0.3699421965317919, 0.36416184971098264, 0.3583815028901734, 0.35452793834296725, 0.35260115606936415, 0.35067437379576105, 0.348747591522158, 0.3603082851637765, 0.34296724470134876, 0.33911368015414256, 0.3198458574181118, 0.3159922928709056, 0.31213872832369943, 0.31213872832369943, 0.31021194605009633, 0.8998073217726397, 0.9325626204238922, 0.9171483622350675, 0.8631984585741811, 0.41811175337186895, 0.4161849710982659, 0.325626204238921, 0.31021194605009633, 0.28901734104046245, 0.8246628131021194, 0.27167630057803466, 0.2658959537572254, 0.23699421965317918, 0.2254335260115607, 0.2350674373795761, 0.20809248554913296, 0.2023121387283237, 0.19845857418111754, 0.18689788053949905, 0.18882466281310212, 0.9460500963391136, 0.928709055876686, 0.18497109826589594, 0.1811175337186898, 0.17148362235067438, 0.1926782273603083, 0.1599229287090559, 0.15414258188824662, 0.15221579961464354, 0.15221579961464354, 0.15028901734104047, 0.14836223506743737, 0.19653179190751446, 0.19845857418111754, 0.2774566473988439, 0.3140655105973025, 0.43352601156069365, 0.5009633911368016, 0.4258188824662813, 0.5934489402697495, 0.6936416184971098, 0.7687861271676301, 0.8188824662813102, 0.8516377649325626, 0.8998073217726397, 0.9421965317919075, 0.9132947976878613, 0.8766859344894027, 0.8342967244701349, 0.7938342967244701, 0.7263969171483622, 0.6358381502890174, 0.5472061657032755, 0.325626204238921, 0.07129094412331406, 0.0674373795761079, 0.06551059730250482, 0.057803468208092484, 0.055876685934489405, 0.057803468208092484, 0.05394990366088632, 0.05394990366088632, 0.05009633911368015, 0.05009633911368015, 0.05009633911368015, 0.05009633911368015, 0.05009633911368015, 0.07321772639691715, 0.16184971098265896, 0.4007707129094412, 0.8689788053949904, 0.882466281310212, 0.9075144508670521, 0.9132947976878613, 0.9152215799614644, 0.9229287090558767, 0.9421965317919075, 0.9499036608863198, 0.9248554913294798, 0.9190751445086706, 0.9152215799614644, 0.9113680154142582, 0.882466281310212, 0.8747591522157996, 0.8670520231213873, 0.1599229287090559, 0.057803468208092484, 0.7321772639691715, 0.859344894026975, 0.9210019267822736, 0.905587668593449, 0.8073217726396917, 0.6358381502890174, 0.4238921001926782, 0.26204238921001927, 0.07321772639691715, 0.06551059730250482, 0.06551059730250482, 0.046242774566473986, 0.04238921001926782, 0.04238921001926782, 0.04046242774566474, 0.04046242774566474, 0.04046242774566474, 0.04046242774566474, 0.04046242774566474, 0.04046242774566474, 0.04046242774566474, 0.04046242774566474, 0.038535645472061654, 0.03468208092485549, 0.05009633911368015, 0.04431599229287091, 0.03468208092485549, 0.038535645472061654, 0.038535645472061654, 0.036608863198458574, 0.03468208092485549, 0.036608863198458574, 0.038535645472061654, 0.8998073217726397, 0.9479768786127167, 0.5028901734104047, 0.4605009633911368, 0.4123314065510597, 0.4007707129094412, 0.3468208092485549, 0.29865125240847784, 0.15606936416184972, 0.11560693641618497, 0.04238921001926782, 0.028901734104046242, 0.028901734104046242, 0.02697495183044316, 0.025048169556840076, 0.025048169556840076, 0.03468208092485549, 0.03468208092485549, 0.038535645472061654, 0.03275529865125241, 0.028901734104046242, 0.8246628131021194, 0.6782273603082851, 0.24855491329479767, 0.05394990366088632, 0.03275529865125241, 0.030828516377649325, 0.028901734104046242, 0.02697495183044316, 0.02697495183044316, 0.028901734104046242, 0.028901734104046242, 0.03275529865125241, 0.030828516377649325, 0.03275529865125241, 0.03468208092485549, 0.036608863198458574, 0.03468208092485549, 0.036608863198458574, 0.036608863198458574, 0.04046242774566474, 0.04046242774566474, 0.9460500963391136, 0.35645472061657035, 0.31213872832369943, 0.7186897880539499, 0.7842003853564548, 0.8631984585741811, 0.8901734104046243, 0.9383429672447013, 0.9094412331406551, 0.8670520231213873, 0.8304431599229287, 0.7533718689788054, 0.7052023121387283, 0.24470134874759153, 0.20809248554913296, 0.1811175337186898, 0.1599229287090559, 0.10982658959537572, 0.05202312138728324, 0.04431599229287091, 0.04431599229287091, 0.046242774566473986, 0.046242774566473986, 0.9479768786127167, 0.04431599229287091, 0.04431599229287091, 0.046242774566473986, 0.046242774566473986, 0.04816955684007707, 0.046242774566473986, 0.04816955684007707, 0.05394990366088632, 0.05394990366088632, 0.9441233140655106, 0.9171483622350675, 0.348747591522158, 0.26396917148362237, 0.07514450867052024, 0.47591522157996147, 0.16184971098265896, 0.17148362235067438, 0.11753371868978806, 0.1001926782273603, 0.10404624277456648, 0.14065510597302505, 0.12138728323699421, 0.13102119460500963, 0.9075144508670521, 0.15028901734104047, 0.11175337186897881, 0.09826589595375723, 0.09826589595375723, 0.10982658959537572, 0.9132947976878613, 0.43159922928709055, 0.3969171483622351, 0.3699421965317919, 0.36416184971098264, 0.3583815028901734, 0.4007707129094412, 0.4046242774566474, 0.36416184971098264, 0.6551059730250481, 0.8882466281310212, 0.9402697495183044, 0.8342967244701349, 0.4662813102119461, 0.16377649325626203, 0.15606936416184972, 0.15028901734104047, 0.13680154142581888, 0.11753371868978806, 0.11560693641618497, 0.1252408477842004, 0.9075144508670521, 0.14258188824662812, 0.12138728323699421, 0.1233140655105973, 0.1233140655105973, 0.16955684007707128, 0.14065510597302505, 0.12138728323699421, 0.12138728323699421, 0.12138728323699421, 0.12138728323699421, 0.12909441233140656, 0.1329479768786127, 0.1329479768786127, 0.22157996146435452, 0.1907514450867052, 0.2524084778420039, 0.8921001926782274, 0.15028901734104047, 0.14836223506743737, 0.15221579961464354, 0.15606936416184972, 0.1579961464354528, 0.17148362235067438, 0.18304431599229287, 0.5279383429672447, 0.5414258188824663, 0.2350674373795761, 0.2466281310211946, 0.2524084778420039, 0.2658959537572254, 0.27167630057803466, 0.27552986512524086, 0.2909441233140655, 0.3063583815028902, 0.3217726396917148, 0.33911368015414256, 0.3468208092485549, 0.3699421965317919, 0.3834296724470135, 0.9421965317919075, 0.41040462427745666, 0.4393063583815029, 0.5009633911368016, 0.6223506743737958], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Phosphonate-bd.gap.json b/pfam_gap_rates/Phosphonate-bd.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..598ca8e660b747204ccc5cfb8a89e2e211a600dc
--- /dev/null
+++ b/pfam_gap_rates/Phosphonate-bd.gap.json
@@ -0,0 +1 @@
+{"family": "Phosphonate-bd", "n_seqs": 1583, "length": 309, "gap_rates": [0.5818066961465572, 0.4295641187618446, 0.3720783322804801, 0.3543903979785218, 0.34112444725205304, 0.3297536323436513, 0.3215413771320278, 0.30132659507264686, 0.2798483891345546, 0.25963360707517374, 0.24573594440934934, 0.23752368919772585, 0.22488945041061276, 0.2229943145925458, 0.19583070120025267, 0.18130132659507264, 0.1724573594440935, 0.16424510423247, 0.15476942514213518, 0.15224257738471256, 0.14971572962728996, 0.14718888186986734, 0.14403032217308906, 0.14276689829437778, 0.14276689829437778, 0.13897662665824384, 0.1396083385975995, 0.9393556538218573, 0.9463044851547694, 0.8616550852811118, 0.12886923562855337, 0.12255211623499684, 0.12002526847757422, 0.9267214150347441, 0.11433986102337335, 0.10865445356917246, 0.10486418193303854, 0.10170562223626027, 0.09917877447883765, 0.09854706253948199, 0.16045483259633608, 0.12886923562855337, 0.11244472520530638, 0.09096651926721415, 0.08591282375236892, 0.08275426405559065, 0.08022741629816804, 0.07959570435881239, 0.07833228048010107, 0.07706885660138976, 0.07706885660138976, 0.07264687302590019, 0.07012002526847758, 0.06696146557169931, 0.06506632975363234, 0.06317119393556538, 0.06127605811749842, 0.060644346178142766, 0.05811749842072015, 0.056854074542008845, 0.05559065066329753, 0.05622236260265319, 0.05432722678458623, 0.054958938723941884, 0.053063802905874924, 0.05369551484523057, 0.05180037902716361, 0.05053695514845231, 0.051168667087807956, 0.08401768793430196, 0.0972836386607707, 0.9463044851547694, 0.0903348073278585, 0.8723941882501579, 0.051168667087807956, 0.043588123815540114, 0.04295641187618446, 0.041692987997473153, 0.04042956411876184, 0.03979785217940619, 0.03853442830069488, 0.03916614024005054, 0.043588123815540114, 0.08970309538850284, 0.9185091598231206, 0.9406190777005685, 0.8566013897662665, 0.5596967782691092, 0.30006317119393555, 0.26721415034744156, 0.9222994314592545, 0.8951358180669615, 0.1819330385344283, 0.08843967150979154, 0.8970309538850284, 0.9058749210360075, 0.9248262792166771, 0.9374605180037903, 0.9418825015792799, 0.9475679090334808, 0.9431459254579911, 0.9380922299431459, 0.932406822488945, 0.9102969046114971, 0.9020846493998737, 0.8963992419456728, 0.027163613392293114, 0.02337334175615919, 0.014529374605180037, 0.014529374605180037, 0.013897662665824383, 0.014529374605180037, 0.013897662665824383, 0.015792798483891344, 0.016424510423247, 0.016424510423247, 0.028427037271004423, 0.029058749210360075, 0.018951358180669616, 0.8654453569172458, 0.01958307012002527, 0.03790271636133923, 0.02021478205938092, 0.01831964624131396, 0.015792798483891344, 0.015792798483891344, 0.015792798483891344, 0.919772583701832, 0.9355653821857233, 0.9267214150347441, 0.8957675300063171, 0.017056222362602652, 0.016424510423247, 0.014529374605180037, 0.015161086544535692, 0.013265950726468731, 0.013265950726468731, 0.013265950726468731, 0.014529374605180037, 0.013897662665824383, 0.018951358180669616, 0.018951358180669616, 0.022109917877447885, 0.025900189513581806, 0.02147820593809223, 0.08970309538850284, 0.03979785217940619, 0.022109917877447885, 0.01831964624131396, 0.017687934301958308, 0.013897662665824383, 0.012634238787113077, 0.032849020846494, 0.016424510423247, 0.5470625394819962, 0.2406822488945041, 0.04611497157296273, 0.032217308907138344, 0.025268477574226154, 0.022741629816803537, 0.01831964624131396, 0.07770056854074542, 0.07706885660138976, 0.914087176247631, 0.9374605180037903, 0.9456727732154138, 0.9311433986102338, 0.9058749210360075, 0.10170562223626027, 0.09665192672141504, 0.06253948199620973, 0.02969046114971573, 0.01958307012002527, 0.027795325331648767, 0.5211623499684144, 0.024005053695514846, 0.01958307012002527, 0.025268477574226154, 0.9317751105495894, 0.03095388502842704, 0.02147820593809223, 0.016424510423247, 0.015792798483891344, 0.015792798483891344, 0.014529374605180037, 0.014529374605180037, 0.013897662665824383, 0.015161086544535692, 0.013897662665824383, 0.013897662665824383, 0.015161086544535692, 0.015161086544535692, 0.015161086544535692, 0.015161086544535692, 0.015161086544535692, 0.015792798483891344, 0.016424510423247, 0.9481996209728364, 0.9469361970941251, 0.020846493998736577, 0.024636765634870498, 0.02337334175615919, 0.024005053695514846, 0.02969046114971573, 0.025900189513581806, 0.026531901452937462, 0.027795325331648767, 0.030322173089071383, 0.03979785217940619, 0.948831332912192, 0.9418825015792799, 0.058749210360075806, 0.09286165508528112, 0.19709412507896398, 0.2337334175615919, 0.20151610865445357, 0.12760581174984206, 0.09602021478205938, 0.9235628553379659, 0.9399873657612129, 0.9450410612760581, 0.9431459254579911, 0.934301958307012, 0.9134554643082754, 0.07012002526847758, 0.05622236260265319, 0.036007580543272265, 0.036007580543272265, 0.036007580543272265, 0.035375868603916616, 0.03663929248262792, 0.9254579911560329, 0.9260897030953885, 0.9267214150347441, 0.9267214150347441, 0.9279848389134555, 0.932406822488945, 0.9267214150347441, 0.9267214150347441, 0.9260897030953885, 0.9254579911560329, 0.9229311433986103, 0.03853442830069488, 0.04042956411876184, 0.04232469993682881, 0.04042956411876184, 0.04232469993682881, 0.05622236260265319, 0.04232469993682881, 0.04421983575489577, 0.04232469993682881, 0.04232469993682881, 0.04232469993682881, 0.04232469993682881, 0.04232469993682881, 0.04295641187618446, 0.04421983575489577, 0.9235628553379659, 0.054958938723941884, 0.04864181933038535, 0.051168667087807956, 0.053063802905874924, 0.07075173720783323, 0.05559065066329753, 0.05811749842072015, 0.05622236260265319, 0.05622236260265319, 0.056854074542008845, 0.058749210360075806, 0.06001263423878711, 0.06253948199620973, 0.065698041692988, 0.07201516108654453, 0.07580543272267846, 0.082122552116235, 0.18382817435249527, 0.881238155401137, 0.31775110549589386, 0.9039797852179406, 0.9267214150347441, 0.9425142135186355, 0.9330385344283006, 0.9191408717624763, 0.881238155401137, 0.3379658875552748, 0.2874289324068225, 0.19898926089703095, 0.20467466835123183, 0.20593809222994314, 0.2122552116234997, 0.21857233101705623, 0.2229943145925458, 0.24573594440934934, 0.25015792798483893, 0.948831332912192, 0.8243840808591283, 0.25773847125710675, 0.2697409981048642, 0.2779532533164877, 0.2886923562855338, 0.29879974731522424, 0.312065698041693, 0.32912192040429566, 0.35249526216045485, 0.3746051800379027, 0.4068224889450411, 0.4396715097915351, 0.5034744156664561, 0.5938092229943146], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Phytochelatin.gap.json b/pfam_gap_rates/Phytochelatin.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..eb9b88ca2ecfd571c3660849e973d88f949eed4a
--- /dev/null
+++ b/pfam_gap_rates/Phytochelatin.gap.json
@@ -0,0 +1 @@
+{"family": "Phytochelatin", "n_seqs": 252, "length": 246, "gap_rates": [0.6865079365079365, 0.46825396825396826, 0.4166666666666667, 0.39285714285714285, 0.376984126984127, 0.373015873015873, 0.36507936507936506, 0.8214285714285714, 0.3412698412698413, 0.30952380952380953, 0.30158730158730157, 0.2857142857142857, 0.2857142857142857, 0.28174603174603174, 0.2777777777777778, 0.2698412698412698, 0.2619047619047619, 0.2619047619047619, 0.25396825396825395, 0.25396825396825395, 0.25396825396825395, 0.2619047619047619, 0.25396825396825395, 0.25396825396825395, 0.25, 0.25, 0.25396825396825395, 0.25396825396825395, 0.24603174603174602, 0.373015873015873, 0.35714285714285715, 0.32142857142857145, 0.23015873015873015, 0.21825396825396826, 0.20634920634920634, 0.20634920634920634, 0.20238095238095238, 0.19047619047619047, 0.18253968253968253, 0.17857142857142858, 0.1865079365079365, 0.17857142857142858, 0.1746031746031746, 0.16666666666666666, 0.16666666666666666, 0.1626984126984127, 0.15476190476190477, 0.15476190476190477, 0.15079365079365079, 0.15476190476190477, 0.1626984126984127, 0.15873015873015872, 0.15873015873015872, 0.15873015873015872, 0.15873015873015872, 0.15873015873015872, 0.15873015873015872, 0.15079365079365079, 0.15079365079365079, 0.15079365079365079, 0.15079365079365079, 0.15079365079365079, 0.15873015873015872, 0.17063492063492064, 0.16666666666666666, 0.1626984126984127, 0.9246031746031746, 0.9444444444444444, 0.9484126984126984, 0.9246031746031746, 0.8531746031746031, 0.19047619047619047, 0.19047619047619047, 0.1865079365079365, 0.19047619047619047, 0.19444444444444445, 0.1865079365079365, 0.19047619047619047, 0.1865079365079365, 0.19444444444444445, 0.18253968253968253, 0.17857142857142858, 0.16666666666666666, 0.17063492063492064, 0.1626984126984127, 0.16666666666666666, 0.1746031746031746, 0.15476190476190477, 0.7619047619047619, 0.19047619047619047, 0.18253968253968253, 0.15476190476190477, 0.8373015873015873, 0.8492063492063492, 0.9484126984126984, 0.9484126984126984, 0.9087301587301587, 0.8492063492063492, 0.8214285714285714, 0.14682539682539683, 0.15476190476190477, 0.14285714285714285, 0.1349206349206349, 0.1349206349206349, 0.1388888888888889, 0.1349206349206349, 0.13095238095238096, 0.1388888888888889, 0.11507936507936507, 0.11507936507936507, 0.11507936507936507, 0.11507936507936507, 0.1111111111111111, 0.1111111111111111, 0.1111111111111111, 0.10714285714285714, 0.10714285714285714, 0.10714285714285714, 0.10317460317460317, 0.0992063492063492, 0.0992063492063492, 0.0992063492063492, 0.15079365079365079, 0.10317460317460317, 0.10714285714285714, 0.10714285714285714, 0.10714285714285714, 0.10317460317460317, 0.1111111111111111, 0.10714285714285714, 0.10714285714285714, 0.7817460317460317, 0.8611111111111112, 0.8809523809523809, 0.8928571428571429, 0.9166666666666666, 0.9444444444444444, 0.9285714285714286, 0.9047619047619048, 0.8849206349206349, 0.876984126984127, 0.8531746031746031, 0.7380952380952381, 0.17063492063492064, 0.1626984126984127, 0.9404761904761905, 0.13095238095238096, 0.13095238095238096, 0.13095238095238096, 0.12698412698412698, 0.11904761904761904, 0.11904761904761904, 0.11904761904761904, 0.11904761904761904, 0.11904761904761904, 0.11904761904761904, 0.11904761904761904, 0.11507936507936507, 0.1111111111111111, 0.11507936507936507, 0.11507936507936507, 0.11507936507936507, 0.40476190476190477, 0.5912698412698413, 0.9365079365079365, 0.9325396825396826, 0.5833333333333334, 0.38492063492063494, 0.9404761904761905, 0.9444444444444444, 0.9444444444444444, 0.9404761904761905, 0.12301587301587301, 0.1111111111111111, 0.1111111111111111, 0.1111111111111111, 0.1111111111111111, 0.1111111111111111, 0.1111111111111111, 0.1111111111111111, 0.11507936507936507, 0.11904761904761904, 0.12698412698412698, 0.1111111111111111, 0.1111111111111111, 0.1111111111111111, 0.10714285714285714, 0.10317460317460317, 0.9285714285714286, 0.09523809523809523, 0.09126984126984126, 0.09126984126984126, 0.09126984126984126, 0.09126984126984126, 0.09126984126984126, 0.09126984126984126, 0.09126984126984126, 0.09126984126984126, 0.09523809523809523, 0.09523809523809523, 0.09523809523809523, 0.09523809523809523, 0.09523809523809523, 0.09523809523809523, 0.0873015873015873, 0.0873015873015873, 0.0873015873015873, 0.0873015873015873, 0.0873015873015873, 0.0873015873015873, 0.0873015873015873, 0.1388888888888889, 0.0873015873015873, 0.10317460317460317, 0.0992063492063492, 0.10714285714285714, 0.0992063492063492, 0.10317460317460317, 0.10317460317460317, 0.10317460317460317, 0.09523809523809523, 0.09523809523809523, 0.0992063492063492, 0.10714285714285714, 0.10714285714285714, 0.10714285714285714, 0.10714285714285714, 0.10714285714285714, 0.1111111111111111, 0.1111111111111111, 0.11507936507936507, 0.11904761904761904, 0.1388888888888889, 0.14682539682539683, 0.14285714285714285, 0.15079365079365079, 0.17063492063492064, 0.19047619047619047, 0.20238095238095238, 0.19444444444444445, 0.19444444444444445, 0.19444444444444445, 0.20238095238095238, 0.21031746031746032, 0.29365079365079366, 0.6071428571428571], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Pollen_allerg_1.gap.json b/pfam_gap_rates/Pollen_allerg_1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..0735417455e920cad3b8a773179d731e8f4b7058
--- /dev/null
+++ b/pfam_gap_rates/Pollen_allerg_1.gap.json
@@ -0,0 +1 @@
+{"family": "Pollen_allerg_1", "n_seqs": 1238, "length": 91, "gap_rates": [0.24151857835218093, 0.10904684975767366, 0.07835218093699516, 0.07189014539579967, 0.06623586429725363, 0.0630048465266559, 0.06058158319870759, 0.05815831987075929, 0.05492730210016155, 0.05088852988691438, 0.8990306946688207, 0.5864297253634895, 0.6090468497576736, 0.0420032310177706, 0.04038772213247173, 0.0395799676898223, 0.04038772213247173, 0.04281098546042003, 0.03796445880452343, 0.04281098546042003, 0.0420032310177706, 0.0395799676898223, 0.04119547657512116, 0.07350565428109855, 0.06865912762520193, 0.05896607431340872, 0.05331179321486268, 0.033117932148626815, 0.030694668820678513, 0.02988691437802908, 0.02827140549273021, 0.029079159935379646, 0.029079159935379646, 0.029079159935379646, 0.22051696284329564, 0.027463651050080775, 0.8998384491114702, 0.932956381260097, 0.9216478190630049, 0.8554119547657512, 0.2560581583198708, 0.09046849757673667, 0.05411954765751212, 0.0395799676898223, 0.03231017770597738, 0.03150242326332795, 0.03150242326332795, 0.02988691437802908, 0.02988691437802908, 0.030694668820678513, 0.02988691437802908, 0.0444264943457189, 0.030694668820678513, 0.03150242326332795, 0.034733441033925685, 0.03150242326332795, 0.033117932148626815, 0.033925686591276254, 0.03231017770597738, 0.036348949919224556, 0.9248788368336026, 0.15024232633279483, 0.7641357027463651, 0.045234248788368334, 0.034733441033925685, 0.033925686591276254, 0.033117932148626815, 0.033925686591276254, 0.033925686591276254, 0.034733441033925685, 0.035541195476575124, 0.03796445880452343, 0.0395799676898223, 0.0420032310177706, 0.04281098546042003, 0.8408723747980614, 0.045234248788368334, 0.046849757673667204, 0.04765751211631664, 0.9434571890145396, 0.9281098546042004, 0.05250403877221325, 0.05977382875605816, 0.062197092084006464, 0.07350565428109855, 0.07996768982229402, 0.08966074313408724, 0.09450726978998385, 0.09935379644588045, 0.11631663974151858, 0.1752827140549273], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PolyA_pol_arg_C.gap.json b/pfam_gap_rates/PolyA_pol_arg_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..38668f21ebd9d4a4f2946d3489d76d9483474ff0
--- /dev/null
+++ b/pfam_gap_rates/PolyA_pol_arg_C.gap.json
@@ -0,0 +1 @@
+{"family": "PolyA_pol_arg_C", "n_seqs": 314, "length": 136, "gap_rates": [0.8312101910828026, 0.23885350318471338, 0.14968152866242038, 0.11464968152866242, 0.09235668789808917, 0.0732484076433121, 0.06369426751592357, 0.054140127388535034, 0.04777070063694268, 0.044585987261146494, 0.044585987261146494, 0.041401273885350316, 0.022292993630573247, 0.01910828025477707, 0.01910828025477707, 0.01910828025477707, 0.01910828025477707, 0.01910828025477707, 0.01910828025477707, 0.01910828025477707, 0.022292993630573247, 0.022292993630573247, 0.01910828025477707, 0.01592356687898089, 0.006369426751592357, 0.0031847133757961785, 0.0031847133757961785, 0.0031847133757961785, 0.0031847133757961785, 0.0031847133757961785, 0.0031847133757961785, 0.0031847133757961785, 0.0031847133757961785, 0.0031847133757961785, 0.0031847133757961785, 0.0031847133757961785, 0.0031847133757961785, 0.0031847133757961785, 0.0031847133757961785, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0031847133757961785, 0.0031847133757961785, 0.0031847133757961785, 0.012738853503184714, 0.006369426751592357, 0.009554140127388535, 0.0031847133757961785, 0.0031847133757961785, 0.0031847133757961785, 0.0031847133757961785, 0.0031847133757961785, 0.0031847133757961785, 0.0031847133757961785, 0.0031847133757961785, 0.0031847133757961785, 0.0031847133757961785, 0.0031847133757961785, 0.0031847133757961785, 0.0031847133757961785, 0.0031847133757961785, 0.0031847133757961785, 0.0031847133757961785, 0.0031847133757961785, 0.0031847133757961785, 0.0031847133757961785, 0.0031847133757961785, 0.0031847133757961785, 0.0031847133757961785, 0.8662420382165605, 0.8312101910828026, 0.0031847133757961785, 0.012738853503184714, 0.006369426751592357, 0.009554140127388535, 0.022292993630573247, 0.9267515923566879, 0.054140127388535034, 0.006369426751592357, 0.006369426751592357, 0.006369426751592357, 0.006369426751592357, 0.006369426751592357, 0.006369426751592357, 0.006369426751592357, 0.006369426751592357, 0.009554140127388535, 0.01592356687898089, 0.01592356687898089, 0.01592356687898089, 0.025477707006369428, 0.022292993630573247, 0.028662420382165606, 0.028662420382165606, 0.9363057324840764, 0.03503184713375796, 0.03821656050955414, 0.03821656050955414, 0.041401273885350316, 0.041401273885350316, 0.041401273885350316, 0.044585987261146494, 0.044585987261146494, 0.054140127388535034, 0.054140127388535034, 0.06050955414012739, 0.06050955414012739, 0.0732484076433121, 0.16878980891719744, 0.19745222929936307, 0.321656050955414, 0.6910828025477707, 0.7993630573248408, 0.8980891719745223, 0.9299363057324841, 0.9394904458598726, 0.9490445859872612, 0.945859872611465, 0.9363057324840764, 0.9171974522292994, 0.8662420382165605, 0.7579617834394905, 0.6114649681528662, 0.14968152866242038, 0.2070063694267516, 0.14012738853503184, 0.1305732484076433, 0.14331210191082802, 0.1751592356687898, 0.28343949044585987, 0.3630573248407643, 0.5318471337579618, 0.8885350318471338], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Poly_export.gap.json b/pfam_gap_rates/Poly_export.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..3bb12e087e22c30771575b53084b2fba771ca698
--- /dev/null
+++ b/pfam_gap_rates/Poly_export.gap.json
@@ -0,0 +1 @@
+{"family": "Poly_export", "n_seqs": 1722, "length": 105, "gap_rates": [0.667828106852497, 0.4186991869918699, 0.22415795586527293, 0.140534262485482, 0.11033681765389082, 0.047038327526132406, 0.03077816492450639, 0.028455284552845527, 0.024390243902439025, 0.023809523809523808, 0.023809523809523808, 0.023809523809523808, 0.02264808362369338, 0.020905923344947737, 0.01916376306620209, 0.01916376306620209, 0.018583042973286876, 0.025551684088269456, 0.022067363530778164, 0.13879210220673635, 0.8699186991869918, 0.18699186991869918, 0.194541231126597, 0.19337979094076654, 0.12427409988385599, 0.6451800232288037, 0.6515679442508711, 0.6724738675958188, 0.7357723577235772, 0.7624854819976771, 0.7938443670150988, 0.8083623693379791, 0.8344947735191638, 0.8710801393728222, 0.9163763066202091, 0.9494773519163763, 0.9326364692218351, 0.8850174216027874, 0.8559814169570267, 0.8222996515679443, 0.8013937282229965, 0.7874564459930313, 0.7479674796747967, 0.7166085946573751, 0.6573751451800233, 0.6475029036004646, 0.632404181184669, 0.49361207897793263, 0.5360046457607434, 0.5249709639953543, 0.5052264808362369, 0.46747967479674796, 0.03716608594657375, 0.005226480836236934, 0.0029036004645760743, 0.0017421602787456446, 0.0017421602787456446, 0.0011614401858304297, 0.004645760743321719, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0005807200929152149, 0.0005807200929152149, 0.0011614401858304297, 0.0005807200929152149, 0.0011614401858304297, 0.0011614401858304297, 0.0017421602787456446, 0.0017421602787456446, 0.0017421602787456446, 0.0017421602787456446, 0.0017421602787456446, 0.0017421602787456446, 0.0017421602787456446, 0.0023228803716608595, 0.0023228803716608595, 0.0029036004645760743, 0.0029036004645760743, 0.0029036004645760743, 0.0029036004645760743, 0.0029036004645760743, 0.0029036004645760743, 0.003484320557491289, 0.003484320557491289, 0.003484320557491289, 0.9006968641114983, 0.7723577235772358, 0.005807200929152149, 0.018583042973286876, 0.7584204413472706, 0.078397212543554, 0.10452961672473868, 0.07375145180023229, 0.08013937282229965, 0.09465737514518002, 0.10336817653890824, 0.10511033681765389, 0.1173054587688734, 0.13240418118466898, 0.1835075493612079, 0.289198606271777], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Polysacc_synt.gap.json b/pfam_gap_rates/Polysacc_synt.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..2c6ab0a7ce8bfc3014e155758deed952f2915363
--- /dev/null
+++ b/pfam_gap_rates/Polysacc_synt.gap.json
@@ -0,0 +1 @@
+{"family": "Polysacc_synt", "n_seqs": 3544, "length": 329, "gap_rates": [0.8180022573363431, 0.46303611738148986, 0.327313769751693, 0.22488713318284426, 0.18397291196388263, 0.14080135440180586, 0.12669300225733635, 0.11202031602708803, 0.09452595936794582, 0.08493227990970655, 0.07703160270880362, 0.07110609480812641, 0.06405191873589165, 0.06235891647855531, 0.058408577878103836, 0.0595372460496614, 0.04966139954853273, 0.04542889390519187, 0.040067720090293454, 0.037528216704288936, 0.0358352144469526, 0.033860045146726865, 0.0327313769751693, 0.031038374717832957, 0.030474040632054177, 0.02878103837471783, 0.027934537246049662, 0.02708803611738149, 0.02708803611738149, 0.025395033860045147, 0.023984198645598195, 0.023137697516930022, 0.023137697516930022, 0.02172686230248307, 0.02172686230248307, 0.020598194130925507, 0.020033860045146727, 0.019469525959367944, 0.018340857787810385, 0.019469525959367944, 0.018340857787810385, 0.017494356659142212, 0.017776523702031602, 0.017494356659142212, 0.01805869074492099, 0.018623024830699775, 0.018340857787810385, 0.020033860045146727, 0.024548532731376974, 0.0358352144469526, 0.0268058690744921, 0.03527088036117382, 0.02341986455981941, 0.01664785553047404, 0.02116252821670429, 0.015237020316027089, 0.014954853273137697, 0.015237020316027089, 0.015519187358916478, 0.01608352144469526, 0.017212189616252822, 0.016930022573363433, 0.01580135440180587, 0.01580135440180587, 0.015519187358916478, 0.015519187358916478, 0.015519187358916478, 0.014954853273137697, 0.019751693002257337, 0.21585778781038376, 0.49802483069977427, 0.7793453724604966, 0.8481941309255079, 0.9020880361173815, 0.8064334085778782, 0.6746613995485328, 0.42776523702031605, 0.2516930022573363, 0.15857787810383747, 0.050225733634311515, 0.034988713318284424, 0.022573363431151242, 0.020033860045146727, 0.016930022573363433, 0.01580135440180587, 0.017212189616252822, 0.018340857787810385, 0.020316027088036117, 0.01805869074492099, 0.017212189616252822, 0.014954853273137697, 0.015237020316027089, 0.01636568848758465, 0.014390519187358916, 0.014390519187358916, 0.01636568848758465, 0.014954853273137697, 0.015519187358916478, 0.01580135440180587, 0.017776523702031602, 0.01664785553047404, 0.01805869074492099, 0.019751693002257337, 0.02200902934537246, 0.025959367945823927, 0.19836343115124153, 0.09085778781038374, 0.6055304740406321, 0.698645598194131, 0.8433972911963883, 0.9257900677200903, 0.9390519187358917, 0.9077313769751693, 0.7773702031602708, 0.6540632054176072, 0.48955981941309257, 0.06010158013544018, 0.044582392776523705, 0.04034988713318285, 0.0358352144469526, 0.03160270880361174, 0.029909706546275394, 0.03301354401805869, 0.03357787810383747, 0.031038374717832957, 0.027934537246049662, 0.024830699774266364, 0.020598194130925507, 0.02144469525959368, 0.018623024830699775, 0.017212189616252822, 0.018905191873589165, 0.02116252821670429, 0.030474040632054177, 0.048250564334085776, 0.9280474040632054, 0.6980812641083521, 0.3778216704288939, 0.09170428893905191, 0.05558690744920993, 0.029909706546275394, 0.023137697516930022, 0.019469525959367944, 0.019751693002257337, 0.018905191873589165, 0.018340857787810385, 0.019751693002257337, 0.020033860045146727, 0.018623024830699775, 0.020033860045146727, 0.017776523702031602, 0.019469525959367944, 0.0208803611738149, 0.020598194130925507, 0.022855530474040632, 0.02200902934537246, 0.022573363431151242, 0.0208803611738149, 0.018905191873589165, 0.019751693002257337, 0.02116252821670429, 0.02172686230248307, 0.02200902934537246, 0.022291196388261852, 0.0208803611738149, 0.022573363431151242, 0.02116252821670429, 0.019469525959367944, 0.019751693002257337, 0.0208803611738149, 0.02144469525959368, 0.06574492099322798, 0.030756207674943567, 0.024548532731376974, 0.020598194130925507, 0.0208803611738149, 0.0208803611738149, 0.0208803611738149, 0.022855530474040632, 0.024266365688487584, 0.025677200902934537, 0.025395033860045147, 0.13374717832957111, 0.573645598194131, 0.7457674943566591, 0.8882618510158014, 0.9280474040632054, 0.9483634311512416, 0.9367945823927766, 0.9187358916478555, 0.8103837471783296, 0.707392776523702, 0.47150112866817157, 0.0536117381489842, 0.047121896162528217, 0.0358352144469526, 0.030191873589164784, 0.02878103837471783, 0.025112866817155757, 0.023984198645598195, 0.02737020316027088, 0.025395033860045147, 0.02624153498871332, 0.025112866817155757, 0.025112866817155757, 0.02341986455981941, 0.024266365688487584, 0.025959367945823927, 0.06433408577878104, 0.03978555304740406, 0.034988713318284424, 0.029345372460496615, 0.023984198645598195, 0.025677200902934537, 0.02708803611738149, 0.027652370203160272, 0.03216704288939052, 0.18510158013544017, 0.13628668171557562, 0.07364559819413093, 0.9413092550790068, 0.7474604966139955, 0.0567155756207675, 0.5, 0.5922686230248307, 0.6749435665914221, 0.7220654627539503, 0.7759593679458239, 0.8335214446952596, 0.9128103837471784, 0.9404627539503386, 0.8614559819413092, 0.8086907449209932, 0.7460496613995485, 0.6975169300225733, 0.6345936794582393, 0.5499435665914221, 0.4376410835214447, 0.03922121896162528, 0.061512415349887134, 0.050790067720090294, 0.047686230248306996, 0.05107223476297968, 0.07195259593679458, 0.34142212189616256, 0.7364559819413092, 0.14418735891647855, 0.09791196388261851, 0.044582392776523705, 0.040632054176072234, 0.035553047404063204, 0.03470654627539503, 0.03668171557562077, 0.03611738148984198, 0.0386568848758465, 0.040632054176072234, 0.040067720090293454, 0.0386568848758465, 0.03893905191873589, 0.03724604966139955, 0.037528216704288936, 0.035553047404063204, 0.035553047404063204, 0.0358352144469526, 0.03611738148984198, 0.03611738148984198, 0.03639954853273138, 0.03724604966139955, 0.03724604966139955, 0.036963882618510156, 0.03724604966139955, 0.03639954853273138, 0.03639954853273138, 0.03668171557562077, 0.03639954853273138, 0.03724604966139955, 0.7849887133182845, 0.03837471783295711, 0.041196388261851014, 0.04401805869074492, 0.044582392776523705, 0.047686230248306996, 0.04966139954853273, 0.05163656884875847, 0.05304740406320542, 0.05474040632054176, 0.0536117381489842, 0.6537810383747178, 0.6664785553047404, 0.6969525959367946, 0.7353273137697517, 0.8891083521444695, 0.7116252821670429, 0.6853837471783296, 0.6594243792325056, 0.6320541760722348, 0.05417607223476298, 0.05558690744920993, 0.055304740406320545, 0.0567155756207675, 0.058408577878103836, 0.05812641083521445, 0.058408577878103836, 0.061512415349887134, 0.06376975169300225, 0.06489841986455983, 0.06659142212189616, 0.077313769751693, 0.08098194130925508, 0.08831828442437924, 0.10214446952595936, 0.11230248306997742, 0.11540632054176073, 0.1309255079006772, 0.13487584650112866, 0.1458803611738149, 0.15688487584650113, 0.17071106094808128, 0.18256207674943567, 0.6862302483069977, 0.22404063205417607, 0.23899548532731377, 0.24548532731376976, 0.25, 0.27200902934537247, 0.3007900677200903, 0.3544018058690745, 0.49520316027088035, 0.7423814898419865], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Polysacc_synt_2.gap.json b/pfam_gap_rates/Polysacc_synt_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..0619797cf5f7b7e124dec6850c9eef6625bacee2
--- /dev/null
+++ b/pfam_gap_rates/Polysacc_synt_2.gap.json
@@ -0,0 +1 @@
+{"family": "Polysacc_synt_2", "n_seqs": 1750, "length": 303, "gap_rates": [0.08857142857142856, 0.05028571428571429, 0.05028571428571429, 0.05028571428571429, 0.04971428571428571, 0.04914285714285714, 0.04857142857142857, 0.04857142857142857, 0.04742857142857143, 0.04742857142857143, 0.046857142857142854, 0.046857142857142854, 0.046857142857142854, 0.046285714285714284, 0.046285714285714284, 0.046285714285714284, 0.046285714285714284, 0.046285714285714284, 0.04742857142857143, 0.048, 0.046285714285714284, 0.836, 0.046857142857142854, 0.04742857142857143, 0.046857142857142854, 0.045714285714285714, 0.045714285714285714, 0.045142857142857144, 0.044, 0.044, 0.044, 0.044, 0.044, 0.045142857142857144, 0.044571428571428574, 0.044, 0.045142857142857144, 0.045142857142857144, 0.044571428571428574, 0.044571428571428574, 0.044, 0.04342857142857143, 0.04342857142857143, 0.044, 0.25485714285714284, 0.35942857142857143, 0.33885714285714286, 0.3028571428571429, 0.12114285714285715, 0.09714285714285714, 0.39714285714285713, 0.336, 0.15885714285714286, 0.3902857142857143, 0.3697142857142857, 0.16914285714285715, 0.4857142857142857, 0.41714285714285715, 0.3377142857142857, 0.3171428571428571, 0.038857142857142854, 0.038857142857142854, 0.038857142857142854, 0.038857142857142854, 0.04114285714285714, 0.03942857142857143, 0.04, 0.04228571428571429, 0.04, 0.038857142857142854, 0.038857142857142854, 0.038285714285714284, 0.03942857142857143, 0.03942857142857143, 0.04171428571428572, 0.3737142857142857, 0.3697142857142857, 0.036571428571428574, 0.03542857142857143, 0.03542857142857143, 0.03542857142857143, 0.03542857142857143, 0.03542857142857143, 0.03542857142857143, 0.03542857142857143, 0.036, 0.036, 0.037142857142857144, 0.037714285714285714, 0.037714285714285714, 0.037714285714285714, 0.037714285714285714, 0.037714285714285714, 0.037142857142857144, 0.037714285714285714, 0.037714285714285714, 0.037714285714285714, 0.037714285714285714, 0.037142857142857144, 0.036571428571428574, 0.036571428571428574, 0.036571428571428574, 0.037142857142857144, 0.037142857142857144, 0.037714285714285714, 0.037714285714285714, 0.037714285714285714, 0.038285714285714284, 0.038285714285714284, 0.038857142857142854, 0.038857142857142854, 0.038285714285714284, 0.038285714285714284, 0.038285714285714284, 0.038285714285714284, 0.038285714285714284, 0.038857142857142854, 0.04114285714285714, 0.04114285714285714, 0.04114285714285714, 0.04, 0.04, 0.03942857142857143, 0.04, 0.04057142857142857, 0.04, 0.04, 0.04, 0.04057142857142857, 0.04057142857142857, 0.04171428571428572, 0.04171428571428572, 0.04114285714285714, 0.04114285714285714, 0.04114285714285714, 0.04114285714285714, 0.04114285714285714, 0.04114285714285714, 0.038857142857142854, 0.03942857142857143, 0.03942857142857143, 0.038857142857142854, 0.03942857142857143, 0.03942857142857143, 0.038857142857142854, 0.03942857142857143, 0.03942857142857143, 0.03942857142857143, 0.03942857142857143, 0.03942857142857143, 0.03942857142857143, 0.03942857142857143, 0.03942857142857143, 0.04057142857142857, 0.04171428571428572, 0.04228571428571429, 0.044571428571428574, 0.6017142857142858, 0.5388571428571428, 0.36914285714285716, 0.09942857142857142, 0.8891428571428571, 0.932, 0.9182857142857143, 0.8674285714285714, 0.06857142857142857, 0.04114285714285714, 0.04114285714285714, 0.04114285714285714, 0.04057142857142857, 0.04057142857142857, 0.04, 0.04, 0.04, 0.03942857142857143, 0.03942857142857143, 0.04, 0.04, 0.04285714285714286, 0.04171428571428572, 0.04171428571428572, 0.04057142857142857, 0.04, 0.04, 0.04, 0.04, 0.04, 0.04, 0.04171428571428572, 0.05942857142857143, 0.045714285714285714, 0.04171428571428572, 0.044, 0.045714285714285714, 0.9262857142857143, 0.07828571428571429, 0.04171428571428572, 0.04171428571428572, 0.05142857142857143, 0.04228571428571429, 0.05714285714285714, 0.04171428571428572, 0.04228571428571429, 0.04228571428571429, 0.044, 0.044, 0.04171428571428572, 0.04228571428571429, 0.04228571428571429, 0.037714285714285714, 0.037714285714285714, 0.037714285714285714, 0.038285714285714284, 0.038285714285714284, 0.038285714285714284, 0.038285714285714284, 0.038285714285714284, 0.037714285714285714, 0.037714285714285714, 0.037714285714285714, 0.037714285714285714, 0.037714285714285714, 0.037714285714285714, 0.037714285714285714, 0.038857142857142854, 0.04, 0.037714285714285714, 0.038857142857142854, 0.038857142857142854, 0.03942857142857143, 0.04057142857142857, 0.04057142857142857, 0.04057142857142857, 0.04057142857142857, 0.04057142857142857, 0.038285714285714284, 0.36914285714285716, 0.038857142857142854, 0.038857142857142854, 0.04, 0.04, 0.04, 0.04, 0.04, 0.03942857142857143, 0.03942857142857143, 0.04057142857142857, 0.04114285714285714, 0.04114285714285714, 0.1977142857142857, 0.2, 0.19485714285714287, 0.19257142857142856, 0.224, 0.36, 0.404, 0.4142857142857143, 0.4268571428571429, 0.4857142857142857, 0.8834285714285715, 0.8902857142857142, 0.8851428571428571, 0.8714285714285714, 0.6028571428571429, 0.5074285714285715, 0.07314285714285715, 0.05942857142857143, 0.05828571428571429, 0.056, 0.054857142857142854, 0.054285714285714284, 0.054285714285714284, 0.05542857142857143, 0.056, 0.05657142857142857, 0.05714285714285714, 0.05771428571428571, 0.05942857142857143, 0.05942857142857143, 0.060571428571428575, 0.061142857142857145, 0.061142857142857145, 0.061142857142857145, 0.061714285714285715, 0.061714285714285715, 0.061714285714285715, 0.16057142857142856, 0.06342857142857143, 0.06285714285714286, 0.06742857142857143, 0.06971428571428571, 0.06971428571428571, 0.07714285714285714, 0.08285714285714285, 0.08742857142857142, 0.09314285714285714, 0.09885714285714285, 0.10914285714285714, 0.11657142857142858, 0.14457142857142857, 0.19542857142857142, 0.3251428571428571, 0.7885714285714286], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Polysacc_synt_3.gap.json b/pfam_gap_rates/Polysacc_synt_3.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ee7e7c30b3927c82a94f8fab752f77ff91bcaa51
--- /dev/null
+++ b/pfam_gap_rates/Polysacc_synt_3.gap.json
@@ -0,0 +1 @@
+{"family": "Polysacc_synt_3", "n_seqs": 1575, "length": 309, "gap_rates": [0.4768253968253968, 0.3053968253968254, 0.23047619047619047, 0.20761904761904762, 0.17206349206349206, 0.14857142857142858, 0.1403174603174603, 0.13587301587301587, 0.12825396825396826, 0.12507936507936507, 0.1180952380952381, 0.11365079365079366, 0.11301587301587301, 0.11174603174603175, 0.10984126984126984, 0.10793650793650794, 0.10603174603174603, 0.10539682539682539, 0.10412698412698412, 0.10285714285714286, 0.10285714285714286, 0.1034920634920635, 0.1034920634920635, 0.10222222222222223, 0.10222222222222223, 0.10539682539682539, 0.1073015873015873, 0.1111111111111111, 0.10095238095238095, 0.09841269841269841, 0.10031746031746032, 0.09714285714285714, 0.09650793650793651, 0.09650793650793651, 0.09650793650793651, 0.09523809523809523, 0.09650793650793651, 0.09523809523809523, 0.0946031746031746, 0.09777777777777778, 0.7390476190476191, 0.09650793650793651, 0.09523809523809523, 0.09396825396825396, 0.09206349206349207, 0.08952380952380952, 0.8482539682539683, 0.9060317460317461, 0.9498412698412698, 0.932063492063492, 0.8882539682539683, 0.8171428571428572, 0.11238095238095239, 0.09079365079365079, 0.08126984126984127, 0.07492063492063492, 0.07365079365079365, 0.07238095238095238, 0.06857142857142857, 0.0673015873015873, 0.06984126984126984, 0.0653968253968254, 0.061587301587301586, 0.06031746031746032, 0.06349206349206349, 0.06031746031746032, 0.058412698412698416, 0.06095238095238095, 0.05904761904761905, 0.059682539682539684, 0.05904761904761905, 0.059682539682539684, 0.06031746031746032, 0.06031746031746032, 0.06222222222222222, 0.061587301587301586, 0.06793650793650793, 0.06857142857142857, 0.0692063492063492, 0.07555555555555556, 0.07365079365079365, 0.8946031746031746, 0.07174603174603175, 0.06666666666666667, 0.06349206349206349, 0.06285714285714286, 0.06857142857142857, 0.06793650793650793, 0.0653968253968254, 0.06476190476190476, 0.06412698412698413, 0.06222222222222222, 0.05904761904761905, 0.06222222222222222, 0.059682539682539684, 0.058412698412698416, 0.058412698412698416, 0.05714285714285714, 0.05523809523809524, 0.05523809523809524, 0.05714285714285714, 0.05587301587301587, 0.05714285714285714, 0.05587301587301587, 0.05523809523809524, 0.05714285714285714, 0.05650793650793651, 0.05396825396825397, 0.054603174603174605, 0.05523809523809524, 0.054603174603174605, 0.052698412698412696, 0.052698412698412696, 0.057777777777777775, 0.05650793650793651, 0.05650793650793651, 0.05650793650793651, 0.050793650793650794, 0.04888888888888889, 0.049523809523809526, 0.04825396825396826, 0.04888888888888889, 0.047619047619047616, 0.05015873015873016, 0.049523809523809526, 0.047619047619047616, 0.047619047619047616, 0.047619047619047616, 0.049523809523809526, 0.04825396825396826, 0.045714285714285714, 0.04698412698412698, 0.044444444444444446, 0.9466666666666667, 0.05015873015873016, 0.044444444444444446, 0.04380952380952381, 0.04380952380952381, 0.045714285714285714, 0.04888888888888889, 0.049523809523809526, 0.054603174603174605, 0.04634920634920635, 0.049523809523809526, 0.050793650793650794, 0.04253968253968254, 0.045714285714285714, 0.047619047619047616, 0.049523809523809526, 0.049523809523809526, 0.044444444444444446, 0.04380952380952381, 0.04380952380952381, 0.04380952380952381, 0.045714285714285714, 0.04317460317460318, 0.04253968253968254, 0.04317460317460318, 0.04253968253968254, 0.0419047619047619, 0.03936507936507937, 0.04, 0.04126984126984127, 0.04126984126984127, 0.04126984126984127, 0.03873015873015873, 0.04126984126984127, 0.04, 0.040634920634920635, 0.040634920634920635, 0.03873015873015873, 0.040634920634920635, 0.03873015873015873, 0.8361904761904762, 0.8946031746031746, 0.9434920634920635, 0.9225396825396825, 0.8653968253968254, 0.8012698412698412, 0.03746031746031746, 0.03936507936507937, 0.03873015873015873, 0.09333333333333334, 0.06666666666666667, 0.04317460317460318, 0.04698412698412698, 0.03873015873015873, 0.03428571428571429, 0.031746031746031744, 0.03492063492063492, 0.03365079365079365, 0.03301587301587302, 0.030476190476190476, 0.029841269841269842, 0.029841269841269842, 0.030476190476190476, 0.029841269841269842, 0.030476190476190476, 0.029841269841269842, 0.029206349206349208, 0.029841269841269842, 0.027936507936507936, 0.027936507936507936, 0.027301587301587302, 0.027936507936507936, 0.027936507936507936, 0.027936507936507936, 0.029206349206349208, 0.029841269841269842, 0.02857142857142857, 0.02603174603174603, 0.025396825396825397, 0.02603174603174603, 0.024761904761904763, 0.02412698412698413, 0.025396825396825397, 0.02412698412698413, 0.024761904761904763, 0.025396825396825397, 0.02857142857142857, 0.027936507936507936, 0.02349206349206349, 0.02349206349206349, 0.02412698412698413, 0.022857142857142857, 0.022857142857142857, 0.022857142857142857, 0.022857142857142857, 0.022857142857142857, 0.022857142857142857, 0.03238095238095238, 0.025396825396825397, 0.024761904761904763, 0.03301587301587302, 0.029841269841269842, 0.02666666666666667, 0.03619047619047619, 0.044444444444444446, 0.0692063492063492, 0.06349206349206349, 0.07111111111111111, 0.05396825396825397, 0.040634920634920635, 0.045714285714285714, 0.049523809523809526, 0.044444444444444446, 0.04, 0.04253968253968254, 0.04126984126984127, 0.040634920634920635, 0.0380952380952381, 0.040634920634920635, 0.0380952380952381, 0.03746031746031746, 0.03936507936507937, 0.04380952380952381, 0.04507936507936508, 0.05396825396825397, 0.9307936507936508, 0.06285714285714286, 0.061587301587301586, 0.06095238095238095, 0.12571428571428572, 0.08952380952380952, 0.061587301587301586, 0.06476190476190476, 0.06349206349206349, 0.061587301587301586, 0.061587301587301586, 0.06095238095238095, 0.061587301587301586, 0.06095238095238095, 0.061587301587301586, 0.06285714285714286, 0.06412698412698413, 0.06603174603174604, 0.06603174603174604, 0.06666666666666667, 0.0673015873015873, 0.06603174603174604, 0.07047619047619047, 0.06857142857142857, 0.07936507936507936, 0.07238095238095238, 0.07174603174603175, 0.0761904761904762, 0.08634920634920636, 0.08, 0.07492063492063492, 0.07682539682539682, 0.07746031746031747, 0.07936507936507936, 0.08, 0.08444444444444445, 0.08507936507936507, 0.08634920634920636, 0.09523809523809523, 0.09650793650793651, 0.10539682539682539, 0.1403174603174603, 0.15047619047619049, 0.1568253968253968, 0.16952380952380952, 0.17714285714285713, 0.20825396825396825, 0.2673015873015873, 0.37777777777777777, 0.5580952380952381, 0.7885714285714286], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PorP_SprF.gap.json b/pfam_gap_rates/PorP_SprF.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..07092a7e1ba070ad1d229016e9474e343ab79af0
--- /dev/null
+++ b/pfam_gap_rates/PorP_SprF.gap.json
@@ -0,0 +1 @@
+{"family": "PorP_SprF", "n_seqs": 688, "length": 370, "gap_rates": [0.938953488372093, 0.49273255813953487, 0.2601744186046512, 0.1569767441860465, 0.14534883720930233, 0.125, 0.11773255813953488, 0.11337209302325581, 0.10319767441860465, 0.09738372093023256, 0.09738372093023256, 0.09447674418604651, 0.0755813953488372, 0.06686046511627906, 0.936046511627907, 0.06540697674418605, 0.0625, 0.05813953488372093, 0.055232558139534885, 0.04941860465116279, 0.04941860465116279, 0.04941860465116279, 0.04941860465116279, 0.04796511627906977, 0.04796511627906977, 0.04796511627906977, 0.04941860465116279, 0.04796511627906977, 0.046511627906976744, 0.046511627906976744, 0.8459302325581395, 0.05813953488372093, 0.05377906976744186, 0.0436046511627907, 0.0436046511627907, 0.0436046511627907, 0.0436046511627907, 0.04215116279069767, 0.0436046511627907, 0.04505813953488372, 0.0436046511627907, 0.0436046511627907, 0.04505813953488372, 0.04215116279069767, 0.0436046511627907, 0.04215116279069767, 0.06395348837209303, 0.04215116279069767, 0.040697674418604654, 0.04215116279069767, 0.04215116279069767, 0.04215116279069767, 0.04215116279069767, 0.04215116279069767, 0.0436046511627907, 0.0436046511627907, 0.04215116279069767, 0.0436046511627907, 0.0436046511627907, 0.0436046511627907, 0.0436046511627907, 0.04505813953488372, 0.9186046511627907, 0.8488372093023255, 0.05232558139534884, 0.05377906976744186, 0.7936046511627907, 0.8531976744186046, 0.8953488372093024, 0.9200581395348837, 0.9273255813953488, 0.9433139534883721, 0.9447674418604651, 0.936046511627907, 0.9244186046511628, 0.9113372093023255, 0.8706395348837209, 0.8183139534883721, 0.7747093023255814, 0.2747093023255814, 0.040697674418604654, 0.040697674418604654, 0.03924418604651163, 0.03924418604651163, 0.040697674418604654, 0.03924418604651163, 0.03924418604651163, 0.03924418604651163, 0.0377906976744186, 0.0377906976744186, 0.036337209302325583, 0.036337209302325583, 0.036337209302325583, 0.7543604651162791, 0.7194767441860465, 0.03924418604651163, 0.03488372093023256, 0.03197674418604651, 0.03197674418604651, 0.03197674418604651, 0.03197674418604651, 0.029069767441860465, 0.029069767441860465, 0.029069767441860465, 0.027616279069767442, 0.027616279069767442, 0.027616279069767442, 0.027616279069767442, 0.027616279069767442, 0.02616279069767442, 0.02616279069767442, 0.8357558139534884, 0.9491279069767442, 0.9433139534883721, 0.8008720930232558, 0.19767441860465115, 0.03924418604651163, 0.03343023255813953, 0.03197674418604651, 0.02616279069767442, 0.02616279069767442, 0.02616279069767442, 0.02616279069767442, 0.02616279069767442, 0.02616279069767442, 0.02616279069767442, 0.02616279069767442, 0.027616279069767442, 0.02616279069767442, 0.02616279069767442, 0.02616279069767442, 0.02616279069767442, 0.040697674418604654, 0.040697674418604654, 0.9229651162790697, 0.9011627906976745, 0.03924418604651163, 0.040697674418604654, 0.0377906976744186, 0.03924418604651163, 0.0377906976744186, 0.0872093023255814, 0.13226744186046513, 0.22819767441860464, 0.7034883720930233, 0.7703488372093024, 0.8401162790697675, 0.9084302325581395, 0.9287790697674418, 0.8793604651162791, 0.7936046511627907, 0.7398255813953488, 0.6598837209302325, 0.08284883720930232, 0.08284883720930232, 0.06540697674418605, 0.06540697674418605, 0.0625, 0.059593023255813955, 0.046511627906976744, 0.046511627906976744, 0.06976744186046512, 0.07412790697674419, 0.26744186046511625, 0.6133720930232558, 0.7412790697674418, 0.8328488372093024, 0.9171511627906976, 0.9447674418604651, 0.8953488372093024, 0.7863372093023255, 0.2703488372093023, 0.029069767441860465, 0.02616279069767442, 0.02616279069767442, 0.02616279069767442, 0.02616279069767442, 0.02616279069767442, 0.02616279069767442, 0.02616279069767442, 0.027616279069767442, 0.027616279069767442, 0.027616279069767442, 0.024709302325581394, 0.024709302325581394, 0.023255813953488372, 0.024709302325581394, 0.934593023255814, 0.9476744186046512, 0.9069767441860465, 0.023255813953488372, 0.9215116279069767, 0.9229651162790697, 0.9418604651162791, 0.9302325581395349, 0.9229651162790697, 0.9171511627906976, 0.023255813953488372, 0.023255813953488372, 0.023255813953488372, 0.023255813953488372, 0.023255813953488372, 0.023255813953488372, 0.023255813953488372, 0.023255813953488372, 0.023255813953488372, 0.024709302325581394, 0.024709302325581394, 0.024709302325581394, 0.8052325581395349, 0.9476744186046512, 0.6162790697674418, 0.023255813953488372, 0.036337209302325583, 0.03197674418604651, 0.030523255813953487, 0.0377906976744186, 0.03488372093023256, 0.03343023255813953, 0.04215116279069767, 0.16715116279069767, 0.16715116279069767, 0.7252906976744186, 0.8546511627906976, 0.9215116279069767, 0.940406976744186, 0.9011627906976745, 0.7936046511627907, 0.622093023255814, 0.22819767441860464, 0.06831395348837209, 0.0436046511627907, 0.03343023255813953, 0.03197674418604651, 0.03197674418604651, 0.027616279069767442, 0.027616279069767442, 0.027616279069767442, 0.027616279069767442, 0.027616279069767442, 0.02616279069767442, 0.027616279069767442, 0.027616279069767442, 0.029069767441860465, 0.030523255813953487, 0.03197674418604651, 0.07267441860465117, 0.036337209302325583, 0.6526162790697675, 0.8357558139534884, 0.872093023255814, 0.9055232558139535, 0.940406976744186, 0.9476744186046512, 0.9258720930232558, 0.8808139534883721, 0.8619186046511628, 0.7819767441860465, 0.08139534883720931, 0.03488372093023256, 0.040697674418604654, 0.036337209302325583, 0.030523255813953487, 0.029069767441860465, 0.029069767441860465, 0.027616279069767442, 0.027616279069767442, 0.029069767441860465, 0.029069767441860465, 0.030523255813953487, 0.027616279069767442, 0.029069767441860465, 0.029069767441860465, 0.029069767441860465, 0.029069767441860465, 0.03197674418604651, 0.027616279069767442, 0.8793604651162791, 0.3430232558139535, 0.029069767441860465, 0.02616279069767442, 0.02616279069767442, 0.02616279069767442, 0.03197674418604651, 0.03343023255813953, 0.03343023255813953, 0.03197674418604651, 0.040697674418604654, 0.03197674418604651, 0.14825581395348839, 0.7790697674418605, 0.875, 0.9316860465116279, 0.9142441860465116, 0.7921511627906976, 0.7558139534883721, 0.027616279069767442, 0.027616279069767442, 0.027616279069767442, 0.029069767441860465, 0.029069767441860465, 0.027616279069767442, 0.027616279069767442, 0.027616279069767442, 0.029069767441860465, 0.6729651162790697, 0.6816860465116279, 0.7078488372093024, 0.748546511627907, 0.8037790697674418, 0.8372093023255814, 0.8880813953488372, 0.9200581395348837, 0.8953488372093024, 0.876453488372093, 0.8168604651162791, 0.7674418604651163, 0.7180232558139535, 0.6918604651162791, 0.6744186046511628, 0.6715116279069767, 0.029069767441860465, 0.03197674418604651, 0.029069767441860465, 0.029069767441860465, 0.027616279069767442, 0.027616279069767442, 0.027616279069767442, 0.027616279069767442, 0.027616279069767442, 0.027616279069767442, 0.027616279069767442, 0.02616279069767442, 0.02616279069767442, 0.02616279069767442, 0.40843023255813954, 0.9258720930232558, 0.8997093023255814, 0.027616279069767442, 0.029069767441860465, 0.029069767441860465, 0.029069767441860465, 0.029069767441860465, 0.029069767441860465, 0.030523255813953487, 0.03197674418604651, 0.036337209302325583, 0.0377906976744186, 0.0377906976744186, 0.05377906976744186, 0.050872093023255814, 0.04941860465116279, 0.9186046511627907, 0.05377906976744186, 0.061046511627906974, 0.059593023255813955, 0.8822674418604651, 0.8313953488372093, 0.13517441860465115, 0.07412790697674419, 0.061046511627906974, 0.0625, 0.07122093023255814, 0.07122093023255814, 0.07267441860465117, 0.07848837209302326, 0.08430232558139535, 0.09156976744186046, 0.13372093023255813, 0.30959302325581395], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Porin_1.gap.json b/pfam_gap_rates/Porin_1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..4c27987c2b9597e5156108a707fa7f0732dce4ab
--- /dev/null
+++ b/pfam_gap_rates/Porin_1.gap.json
@@ -0,0 +1 @@
+{"family": "Porin_1", "n_seqs": 105, "length": 386, "gap_rates": [0.38095238095238093, 0.34285714285714286, 0.2761904761904762, 0.2761904761904762, 0.2761904761904762, 0.26666666666666666, 0.26666666666666666, 0.2571428571428571, 0.24761904761904763, 0.24761904761904763, 0.24761904761904763, 0.24761904761904763, 0.24761904761904763, 0.24761904761904763, 0.23809523809523808, 0.23809523809523808, 0.23809523809523808, 0.21904761904761905, 0.20952380952380953, 0.18095238095238095, 0.8571428571428571, 0.17142857142857143, 0.18095238095238095, 0.18095238095238095, 0.18095238095238095, 0.1523809523809524, 0.12380952380952381, 0.12380952380952381, 0.11428571428571428, 0.11428571428571428, 0.10476190476190476, 0.09523809523809523, 0.09523809523809523, 0.09523809523809523, 0.10476190476190476, 0.10476190476190476, 0.09523809523809523, 0.09523809523809523, 0.09523809523809523, 0.08571428571428572, 0.08571428571428572, 0.08571428571428572, 0.08571428571428572, 0.08571428571428572, 0.08571428571428572, 0.08571428571428572, 0.08571428571428572, 0.08571428571428572, 0.08571428571428572, 0.08571428571428572, 0.08571428571428572, 0.08571428571428572, 0.08571428571428572, 0.08571428571428572, 0.08571428571428572, 0.08571428571428572, 0.09523809523809523, 0.08571428571428572, 0.0761904761904762, 0.0761904761904762, 0.0761904761904762, 0.0761904761904762, 0.24761904761904763, 0.23809523809523808, 0.8857142857142857, 0.6666666666666666, 0.22857142857142856, 0.12380952380952381, 0.14285714285714285, 0.11428571428571428, 0.9238095238095239, 0.9333333333333333, 0.9142857142857143, 0.08571428571428572, 0.08571428571428572, 0.08571428571428572, 0.08571428571428572, 0.08571428571428572, 0.08571428571428572, 0.08571428571428572, 0.08571428571428572, 0.08571428571428572, 0.08571428571428572, 0.17142857142857143, 0.09523809523809523, 0.09523809523809523, 0.09523809523809523, 0.09523809523809523, 0.10476190476190476, 0.10476190476190476, 0.10476190476190476, 0.10476190476190476, 0.10476190476190476, 0.10476190476190476, 0.10476190476190476, 0.10476190476190476, 0.10476190476190476, 0.10476190476190476, 0.10476190476190476, 0.10476190476190476, 0.10476190476190476, 0.11428571428571428, 0.12380952380952381, 0.12380952380952381, 0.13333333333333333, 0.12380952380952381, 0.12380952380952381, 0.18095238095238095, 0.1619047619047619, 0.11428571428571428, 0.11428571428571428, 0.11428571428571428, 0.11428571428571428, 0.11428571428571428, 0.11428571428571428, 0.11428571428571428, 0.20952380952380953, 0.9142857142857143, 0.9428571428571428, 0.9238095238095239, 0.7904761904761904, 0.29523809523809524, 0.13333333333333333, 0.11428571428571428, 0.10476190476190476, 0.10476190476190476, 0.11428571428571428, 0.12380952380952381, 0.10476190476190476, 0.11428571428571428, 0.11428571428571428, 0.10476190476190476, 0.10476190476190476, 0.11428571428571428, 0.11428571428571428, 0.11428571428571428, 0.11428571428571428, 0.9428571428571428, 0.11428571428571428, 0.11428571428571428, 0.11428571428571428, 0.11428571428571428, 0.18095238095238095, 0.11428571428571428, 0.11428571428571428, 0.11428571428571428, 0.12380952380952381, 0.14285714285714285, 0.1523809523809524, 0.12380952380952381, 0.11428571428571428, 0.11428571428571428, 0.12380952380952381, 0.13333333333333333, 0.13333333333333333, 0.13333333333333333, 0.12380952380952381, 0.11428571428571428, 0.12380952380952381, 0.12380952380952381, 0.1619047619047619, 0.1619047619047619, 0.1619047619047619, 0.3619047619047619, 0.5523809523809524, 0.7619047619047619, 0.8095238095238095, 0.8380952380952381, 0.8952380952380953, 0.9333333333333333, 0.8761904761904762, 0.8285714285714286, 0.7904761904761904, 0.6857142857142857, 0.5428571428571428, 0.5047619047619047, 0.44761904761904764, 0.3904761904761905, 0.2761904761904762, 0.20952380952380953, 0.21904761904761905, 0.19047619047619047, 0.17142857142857143, 0.17142857142857143, 0.1619047619047619, 0.1619047619047619, 0.1619047619047619, 0.1619047619047619, 0.1523809523809524, 0.1523809523809524, 0.1523809523809524, 0.1523809523809524, 0.1619047619047619, 0.1619047619047619, 0.1619047619047619, 0.1619047619047619, 0.1619047619047619, 0.1619047619047619, 0.7238095238095238, 0.26666666666666666, 0.24761904761904763, 0.1619047619047619, 0.1619047619047619, 0.1619047619047619, 0.17142857142857143, 0.17142857142857143, 0.17142857142857143, 0.17142857142857143, 0.17142857142857143, 0.17142857142857143, 0.17142857142857143, 0.17142857142857143, 0.17142857142857143, 0.19047619047619047, 0.17142857142857143, 0.18095238095238095, 0.21904761904761905, 0.21904761904761905, 0.6190476190476191, 0.8285714285714286, 0.8, 0.8095238095238095, 0.9428571428571428, 0.7428571428571429, 0.6857142857142857, 0.49523809523809526, 0.37142857142857144, 0.22857142857142856, 0.22857142857142856, 0.20952380952380953, 0.2, 0.19047619047619047, 0.18095238095238095, 0.18095238095238095, 0.18095238095238095, 0.18095238095238095, 0.18095238095238095, 0.19047619047619047, 0.18095238095238095, 0.17142857142857143, 0.1619047619047619, 0.1619047619047619, 0.1619047619047619, 0.1619047619047619, 0.1619047619047619, 0.1619047619047619, 0.9428571428571428, 0.9333333333333333, 0.1619047619047619, 0.1619047619047619, 0.1619047619047619, 0.1619047619047619, 0.1619047619047619, 0.1619047619047619, 0.1619047619047619, 0.1619047619047619, 0.18095238095238095, 0.17142857142857143, 0.17142857142857143, 0.17142857142857143, 0.17142857142857143, 0.17142857142857143, 0.17142857142857143, 0.17142857142857143, 0.20952380952380953, 0.20952380952380953, 0.20952380952380953, 0.5142857142857142, 0.6285714285714286, 0.7428571428571429, 0.8095238095238095, 0.8476190476190476, 0.9333333333333333, 0.9428571428571428, 0.9047619047619048, 0.819047619047619, 0.7523809523809524, 0.6666666666666666, 0.580952380952381, 0.4666666666666667, 0.3047619047619048, 0.19047619047619047, 0.18095238095238095, 0.18095238095238095, 0.18095238095238095, 0.17142857142857143, 0.17142857142857143, 0.17142857142857143, 0.19047619047619047, 0.19047619047619047, 0.18095238095238095, 0.18095238095238095, 0.1619047619047619, 0.1619047619047619, 0.1619047619047619, 0.17142857142857143, 0.17142857142857143, 0.17142857142857143, 0.19047619047619047, 0.18095238095238095, 0.18095238095238095, 0.17142857142857143, 0.8857142857142857, 0.17142857142857143, 0.17142857142857143, 0.17142857142857143, 0.17142857142857143, 0.17142857142857143, 0.17142857142857143, 0.17142857142857143, 0.17142857142857143, 0.18095238095238095, 0.19047619047619047, 0.18095238095238095, 0.19047619047619047, 0.18095238095238095, 0.18095238095238095, 0.17142857142857143, 0.17142857142857143, 0.17142857142857143, 0.7333333333333333, 0.8380952380952381, 0.9333333333333333, 0.8761904761904762, 0.819047619047619, 0.6952380952380952, 0.49523809523809526, 0.23809523809523808, 0.20952380952380953, 0.19047619047619047, 0.19047619047619047, 0.20952380952380953, 0.20952380952380953, 0.20952380952380953, 0.2, 0.2, 0.2, 0.18095238095238095, 0.18095238095238095, 0.18095238095238095, 0.18095238095238095, 0.18095238095238095, 0.18095238095238095, 0.18095238095238095, 0.19047619047619047, 0.19047619047619047, 0.19047619047619047, 0.19047619047619047, 0.19047619047619047, 0.2, 0.2, 0.2, 0.2, 0.2, 0.2, 0.2, 0.2, 0.2, 0.20952380952380953, 0.20952380952380953, 0.20952380952380953, 0.20952380952380953, 0.20952380952380953, 0.20952380952380953, 0.41904761904761906, 0.4095238095238095, 0.8952380952380953, 0.5523809523809524, 0.3523809523809524, 0.3142857142857143, 0.2857142857142857, 0.2571428571428571, 0.23809523809523808, 0.23809523809523808, 0.24761904761904763, 0.24761904761904763, 0.23809523809523808, 0.23809523809523808, 0.23809523809523808, 0.23809523809523808, 0.23809523809523808, 0.24761904761904763, 0.24761904761904763, 0.26666666666666666, 0.2761904761904762, 0.29523809523809524], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Porin_2.gap.json b/pfam_gap_rates/Porin_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..0561eec6ff2a7202dfe6a74ff69c4074f83abc75
--- /dev/null
+++ b/pfam_gap_rates/Porin_2.gap.json
@@ -0,0 +1 @@
+{"family": "Porin_2", "n_seqs": 174, "length": 534, "gap_rates": [0.5689655172413793, 0.5517241379310345, 0.5402298850574713, 0.5344827586206896, 0.5517241379310345, 0.4942528735632184, 0.4942528735632184, 0.6206896551724138, 0.5919540229885057, 0.4367816091954023, 0.4367816091954023, 0.43103448275862066, 0.43103448275862066, 0.42528735632183906, 0.41379310344827586, 0.40229885057471265, 0.3735632183908046, 0.3735632183908046, 0.3793103448275862, 0.3793103448275862, 0.3735632183908046, 0.3735632183908046, 0.3218390804597701, 0.3103448275862069, 0.3103448275862069, 0.3103448275862069, 0.27011494252873564, 0.26436781609195403, 0.25287356321839083, 0.25862068965517243, 0.22988505747126436, 0.22988505747126436, 0.22413793103448276, 0.21264367816091953, 0.21264367816091953, 0.1839080459770115, 0.1781609195402299, 0.1724137931034483, 0.1724137931034483, 0.1724137931034483, 0.1781609195402299, 0.1781609195402299, 0.1724137931034483, 0.1724137931034483, 0.1724137931034483, 0.1781609195402299, 0.1839080459770115, 0.1896551724137931, 0.5402298850574713, 0.5632183908045977, 0.6494252873563219, 0.7298850574712644, 0.7931034482758621, 0.8218390804597702, 0.8448275862068966, 0.8620689655172413, 0.9022988505747126, 0.9425287356321839, 0.8735632183908046, 0.8505747126436781, 0.8275862068965517, 0.8045977011494253, 0.764367816091954, 0.6896551724137931, 0.5977011494252874, 0.5517241379310345, 0.5402298850574713, 0.39080459770114945, 0.46551724137931033, 0.4942528735632184, 0.9482758620689655, 0.46551724137931033, 0.42528735632183906, 0.41379310344827586, 0.3620689655172414, 0.3333333333333333, 0.3045977011494253, 0.23563218390804597, 0.2413793103448276, 0.21264367816091953, 0.20114942528735633, 0.1896551724137931, 0.1724137931034483, 0.1724137931034483, 0.16091954022988506, 0.1724137931034483, 0.1724137931034483, 0.16666666666666666, 0.13793103448275862, 0.14367816091954022, 0.15517241379310345, 0.16666666666666666, 0.14367816091954022, 0.1206896551724138, 0.13218390804597702, 0.11494252873563218, 0.10344827586206896, 0.10344827586206896, 0.10344827586206896, 0.10344827586206896, 0.10344827586206896, 0.10344827586206896, 0.09770114942528736, 0.14942528735632185, 0.1206896551724138, 0.09770114942528736, 0.09770114942528736, 0.09770114942528736, 0.09770114942528736, 0.09770114942528736, 0.09770114942528736, 0.10344827586206896, 0.10344827586206896, 0.12643678160919541, 0.11494252873563218, 0.11494252873563218, 0.10919540229885058, 0.1781609195402299, 0.1896551724137931, 0.1896551724137931, 0.3793103448275862, 0.3793103448275862, 0.3448275862068966, 0.3850574712643678, 0.3448275862068966, 0.5574712643678161, 0.8390804597701149, 0.6494252873563219, 0.735632183908046, 0.6379310344827587, 0.7873563218390804, 0.8103448275862069, 0.8275862068965517, 0.8505747126436781, 0.8735632183908046, 0.8908045977011494, 0.9195402298850575, 0.9195402298850575, 0.9080459770114943, 0.8850574712643678, 0.867816091954023, 0.8448275862068966, 0.8275862068965517, 0.7988505747126436, 0.7873563218390804, 0.4942528735632184, 0.367816091954023, 0.22988505747126436, 0.14942528735632185, 0.1206896551724138, 0.10344827586206896, 0.10344827586206896, 0.09770114942528736, 0.09770114942528736, 0.09770114942528736, 0.09770114942528736, 0.09770114942528736, 0.09770114942528736, 0.09770114942528736, 0.09770114942528736, 0.09770114942528736, 0.09770114942528736, 0.09770114942528736, 0.09770114942528736, 0.10344827586206896, 0.10344827586206896, 0.10344827586206896, 0.09770114942528736, 0.09770114942528736, 0.09770114942528736, 0.09770114942528736, 0.10344827586206896, 0.1206896551724138, 0.735632183908046, 0.13793103448275862, 0.14367816091954022, 0.15517241379310345, 0.13218390804597702, 0.14367816091954022, 0.20114942528735633, 0.13218390804597702, 0.10919540229885058, 0.11494252873563218, 0.11494252873563218, 0.13218390804597702, 0.8103448275862069, 0.47126436781609193, 0.3620689655172414, 0.27586206896551724, 0.27586206896551724, 0.26436781609195403, 0.23563218390804597, 0.13793103448275862, 0.10344827586206896, 0.09770114942528736, 0.09770114942528736, 0.09770114942528736, 0.09770114942528736, 0.09770114942528736, 0.09770114942528736, 0.09770114942528736, 0.09770114942528736, 0.10344827586206896, 0.1206896551724138, 0.10919540229885058, 0.10919540229885058, 0.10344827586206896, 0.3218390804597701, 0.1724137931034483, 0.13793103448275862, 0.11494252873563218, 0.10919540229885058, 0.10344827586206896, 0.10344827586206896, 0.10344827586206896, 0.10344827586206896, 0.10344827586206896, 0.10344827586206896, 0.10344827586206896, 0.10344827586206896, 0.10344827586206896, 0.10919540229885058, 0.1206896551724138, 0.9367816091954023, 0.8390804597701149, 0.6724137931034483, 0.6436781609195402, 0.6609195402298851, 0.6666666666666666, 0.603448275862069, 0.8218390804597702, 0.8563218390804598, 0.9022988505747126, 0.9252873563218391, 0.9310344827586207, 0.9367816091954023, 0.9425287356321839, 0.9482758620689655, 0.9482758620689655, 0.9482758620689655, 0.9367816091954023, 0.9367816091954023, 0.9252873563218391, 0.9137931034482759, 0.8793103448275862, 0.8505747126436781, 0.7988505747126436, 0.6091954022988506, 0.6091954022988506, 0.5689655172413793, 0.5172413793103449, 0.4482758620689655, 0.4367816091954023, 0.4425287356321839, 0.40229885057471265, 0.367816091954023, 0.3390804597701149, 0.3218390804597701, 0.29310344827586204, 0.27586206896551724, 0.28735632183908044, 0.5402298850574713, 0.22988505747126436, 0.1896551724137931, 0.13793103448275862, 0.10344827586206896, 0.10344827586206896, 0.10344827586206896, 0.10344827586206896, 0.10344827586206896, 0.10344827586206896, 0.10919540229885058, 0.10919540229885058, 0.10344827586206896, 0.10344827586206896, 0.10919540229885058, 0.11494252873563218, 0.12643678160919541, 0.15517241379310345, 0.13793103448275862, 0.13793103448275862, 0.13218390804597702, 0.13218390804597702, 0.13218390804597702, 0.16091954022988506, 0.13793103448275862, 0.13218390804597702, 0.1206896551724138, 0.41954022988505746, 0.4425287356321839, 0.4482758620689655, 0.46551724137931033, 0.5402298850574713, 0.6149425287356322, 0.6839080459770115, 0.7413793103448276, 0.8333333333333334, 0.8505747126436781, 0.8735632183908046, 0.9310344827586207, 0.9367816091954023, 0.8850574712643678, 0.8620689655172413, 0.8505747126436781, 0.7816091954022989, 0.7241379310344828, 0.6436781609195402, 0.5977011494252874, 0.5057471264367817, 0.45977011494252873, 0.4482758620689655, 0.41954022988505746, 0.41379310344827586, 0.11494252873563218, 0.13218390804597702, 0.13218390804597702, 0.13218390804597702, 0.13793103448275862, 0.13218390804597702, 0.13218390804597702, 0.13218390804597702, 0.13218390804597702, 0.13218390804597702, 0.13218390804597702, 0.13218390804597702, 0.13218390804597702, 0.13218390804597702, 0.13218390804597702, 0.13218390804597702, 0.13793103448275862, 0.6609195402298851, 0.7298850574712644, 0.6436781609195402, 0.13793103448275862, 0.13793103448275862, 0.13793103448275862, 0.13218390804597702, 0.27011494252873564, 0.13218390804597702, 0.13218390804597702, 0.13218390804597702, 0.12643678160919541, 0.12643678160919541, 0.12643678160919541, 0.12643678160919541, 0.12643678160919541, 0.12643678160919541, 0.12643678160919541, 0.13218390804597702, 0.15517241379310345, 0.22988505747126436, 0.20114942528735633, 0.19540229885057472, 0.5114942528735632, 0.5114942528735632, 0.5287356321839081, 0.5287356321839081, 0.5344827586206896, 0.5862068965517241, 0.6551724137931034, 0.6954022988505747, 0.7241379310344828, 0.7586206896551724, 0.7988505747126436, 0.8103448275862069, 0.8160919540229885, 0.8218390804597702, 0.8275862068965517, 0.8448275862068966, 0.867816091954023, 0.9022988505747126, 0.9252873563218391, 0.8908045977011494, 0.8448275862068966, 0.8390804597701149, 0.8275862068965517, 0.8160919540229885, 0.8103448275862069, 0.8103448275862069, 0.7873563218390804, 0.7413793103448276, 0.7183908045977011, 0.6724137931034483, 0.6206896551724138, 0.5459770114942529, 0.5344827586206896, 0.5287356321839081, 0.5287356321839081, 0.5114942528735632, 0.5114942528735632, 0.16666666666666666, 0.3103448275862069, 0.3045977011494253, 0.25862068965517243, 0.26436781609195403, 0.5, 0.40804597701149425, 0.40804597701149425, 0.40229885057471265, 0.3563218390804598, 0.6264367816091954, 0.8793103448275862, 0.5229885057471264, 0.3448275862068966, 0.3275862068965517, 0.3103448275862069, 0.3045977011494253, 0.3045977011494253, 0.28160919540229884, 0.29310344827586204, 0.29310344827586204, 0.3275862068965517, 0.3045977011494253, 0.28735632183908044, 0.28735632183908044, 0.1781609195402299, 0.1839080459770115, 0.1724137931034483, 0.7241379310344828, 0.7701149425287356, 0.9482758620689655, 0.7701149425287356, 0.7413793103448276, 0.7183908045977011, 0.19540229885057472, 0.20689655172413793, 0.20114942528735633, 0.21264367816091953, 0.21264367816091953, 0.20114942528735633, 0.1896551724137931, 0.19540229885057472, 0.20689655172413793, 0.20689655172413793, 0.22413793103448276, 0.22413793103448276, 0.21264367816091953, 0.20689655172413793, 0.20114942528735633, 0.20689655172413793, 0.20689655172413793, 0.22988505747126436, 0.3505747126436782, 0.3448275862068966, 0.7931034482758621, 0.9367816091954023, 0.6781609195402298, 0.5574712643678161, 0.5229885057471264, 0.5172413793103449, 0.5517241379310345, 0.5517241379310345, 0.4540229885057471, 0.6896551724137931, 0.7931034482758621, 0.8620689655172413, 0.8908045977011494, 0.9195402298850575, 0.9310344827586207, 0.9482758620689655, 0.9252873563218391, 0.9195402298850575, 0.867816091954023, 0.8275862068965517, 0.7298850574712644, 0.6436781609195402, 0.40229885057471265, 0.3735632183908046, 0.3563218390804598, 0.21839080459770116, 0.21839080459770116, 0.21264367816091953, 0.21264367816091953, 0.21264367816091953, 0.21264367816091953, 0.21264367816091953, 0.21839080459770116, 0.21839080459770116, 0.21839080459770116, 0.21264367816091953, 0.21839080459770116, 0.21839080459770116, 0.21839080459770116, 0.21839080459770116, 0.21839080459770116, 0.21839080459770116, 0.21839080459770116, 0.21839080459770116, 0.22988505747126436, 0.22988505747126436, 0.22988505747126436, 0.23563218390804597, 0.2471264367816092, 0.2471264367816092, 0.2471264367816092, 0.25862068965517243, 0.28735632183908044, 0.29310344827586204, 0.29310344827586204, 0.367816091954023, 0.41379310344827586, 0.46551724137931033, 0.5517241379310345, 0.603448275862069, 0.6896551724137931, 0.867816091954023, 0.8850574712643678, 0.8908045977011494, 0.9252873563218391, 0.9022988505747126, 0.8908045977011494, 0.867816091954023, 0.8563218390804598, 0.7758620689655172, 0.7816091954022989, 0.7873563218390804, 0.7931034482758621, 0.8160919540229885, 0.8390804597701149, 0.8563218390804598, 0.8563218390804598, 0.8620689655172413, 0.8620689655172413, 0.867816091954023, 0.867816091954023, 0.867816091954023, 0.867816091954023, 0.867816091954023, 0.867816091954023, 0.867816091954023, 0.867816091954023, 0.8793103448275862, 0.9022988505747126, 0.9367816091954023], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Porin_O_P.gap.json b/pfam_gap_rates/Porin_O_P.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ee67c11c4276bfcbe9b2243160ad75ac03102048
--- /dev/null
+++ b/pfam_gap_rates/Porin_O_P.gap.json
@@ -0,0 +1 @@
+{"family": "Porin_O_P", "n_seqs": 615, "length": 462, "gap_rates": [0.8861788617886179, 0.7902439024390244, 0.7138211382113822, 0.6585365853658537, 0.6032520325203252, 0.5804878048780487, 0.5495934959349593, 0.5349593495934959, 0.5235772357723577, 0.5073170731707317, 0.4894308943089431, 0.6211382113821138, 0.4715447154471545, 0.44715447154471544, 0.424390243902439, 0.9333333333333333, 0.8682926829268293, 0.3723577235772358, 0.35609756097560974, 0.3154471544715447, 0.4959349593495935, 0.27967479674796747, 0.22439024390243903, 0.2032520325203252, 0.191869918699187, 0.18048780487804877, 0.21138211382113822, 0.16260162601626016, 0.14471544715447154, 0.926829268292683, 0.8813008130081301, 0.13333333333333333, 0.13333333333333333, 0.13333333333333333, 0.13333333333333333, 0.13170731707317074, 0.13170731707317074, 0.13170731707317074, 0.12845528455284552, 0.12520325203252033, 0.12357723577235773, 0.12357723577235773, 0.12032520325203253, 0.12357723577235773, 0.12032520325203253, 0.11869918699186992, 0.8813008130081301, 0.2016260162601626, 0.13008130081300814, 0.13008130081300814, 0.11707317073170732, 0.11869918699186992, 0.11869918699186992, 0.11869918699186992, 0.11544715447154472, 0.11056910569105691, 0.1073170731707317, 0.10569105691056911, 0.1024390243902439, 0.1008130081300813, 0.1040650406504065, 0.23252032520325203, 0.21951219512195122, 0.41300813008130083, 0.5040650406504065, 0.4878048780487805, 0.6796747967479675, 0.6048780487804878, 0.6699186991869919, 0.6471544715447154, 0.6926829268292682, 0.6813008130081301, 0.8796747967479674, 0.9252032520325203, 0.9495934959349593, 0.9317073170731708, 0.9170731707317074, 0.8666666666666667, 0.5398373983739837, 0.0910569105691057, 0.08130081300813008, 0.08130081300813008, 0.08292682926829269, 0.08292682926829269, 0.08130081300813008, 0.07804878048780488, 0.07804878048780488, 0.07804878048780488, 0.07804878048780488, 0.9186991869918699, 0.9024390243902439, 0.14146341463414633, 0.08617886178861789, 0.08130081300813008, 0.9300813008130081, 0.8699186991869918, 0.07804878048780488, 0.07804878048780488, 0.07642276422764227, 0.07642276422764227, 0.07642276422764227, 0.07642276422764227, 0.07804878048780488, 0.07804878048780488, 0.07804878048780488, 0.07967479674796749, 0.08292682926829269, 0.08130081300813008, 0.08617886178861789, 0.08617886178861789, 0.08617886178861789, 0.08943089430894309, 0.1024390243902439, 0.21951219512195122, 0.13008130081300814, 0.13008130081300814, 0.12520325203252033, 0.12357723577235773, 0.13170731707317074, 0.13495934959349593, 0.13333333333333333, 0.13008130081300814, 0.13170731707317074, 0.13170731707317074, 0.13333333333333333, 0.8634146341463415, 0.926829268292683, 0.8813008130081301, 0.8065040650406504, 0.4926829268292683, 0.383739837398374, 0.3463414634146341, 0.16910569105691056, 0.9186991869918699, 0.926829268292683, 0.9333333333333333, 0.9365853658536586, 0.9398373983739837, 0.9414634146341463, 0.9463414634146341, 0.9463414634146341, 0.9495934959349593, 0.9463414634146341, 0.943089430894309, 0.9414634146341463, 0.9365853658536586, 0.9349593495934959, 0.9300813008130081, 0.9219512195121952, 0.9138211382113821, 0.15934959349593497, 0.17235772357723578, 0.5300813008130081, 0.39186991869918697, 0.17560975609756097, 0.15934959349593497, 0.15772357723577235, 0.15772357723577235, 0.16097560975609757, 0.16260162601626016, 0.16422764227642275, 0.16585365853658537, 0.16585365853658537, 0.16585365853658537, 0.17073170731707318, 0.17235772357723578, 0.21788617886178863, 0.21300813008130082, 0.19349593495934958, 0.1983739837398374, 0.1902439024390244, 0.19349593495934958, 0.4211382113821138, 0.22276422764227644, 0.19349593495934958, 0.1886178861788618, 0.18699186991869918, 0.19349593495934958, 0.1902439024390244, 0.6130081300813008, 0.7219512195121951, 0.8292682926829268, 0.8991869918699187, 0.9252032520325203, 0.943089430894309, 0.9073170731707317, 0.8829268292682927, 0.7691056910569106, 0.6682926829268293, 0.5121951219512195, 0.4, 0.35772357723577236, 0.24552845528455283, 0.23577235772357724, 0.3934959349593496, 0.35121951219512193, 0.22601626016260162, 0.22601626016260162, 0.23414634146341465, 0.23577235772357724, 0.23902439024390243, 0.24065040650406505, 0.24390243902439024, 0.24715447154471545, 0.25040650406504067, 0.2552845528455285, 0.25203252032520324, 0.26178861788617885, 0.3983739837398374, 0.38699186991869916, 0.3772357723577236, 0.3853658536585366, 0.3804878048780488, 0.4715447154471545, 0.4585365853658537, 0.46504065040650405, 0.4292682926829268, 0.46178861788617886, 0.8634146341463415, 0.943089430894309, 0.808130081300813, 0.383739837398374, 0.37398373983739835, 0.3544715447154472, 0.3463414634146341, 0.33983739837398375, 0.3284552845528455, 0.31869918699186994, 0.3170731707317073, 0.3170731707317073, 0.3121951219512195, 0.3105691056910569, 0.3105691056910569, 0.3105691056910569, 0.3089430894308943, 0.3105691056910569, 0.3154471544715447, 0.34471544715447155, 0.45365853658536587, 0.41788617886178864, 0.4146341463414634, 0.4764227642276423, 0.4715447154471545, 0.4991869918699187, 0.8959349593495934, 0.6926829268292682, 0.7089430894308943, 0.6211382113821138, 0.591869918699187, 0.551219512195122, 0.5138211382113821, 0.3886178861788618, 0.359349593495935, 0.34959349593495936, 0.3934959349593496, 0.375609756097561, 0.37073170731707317, 0.36097560975609755, 0.35284552845528455, 0.3382113821138211, 0.33495934959349594, 0.33495934959349594, 0.33495934959349594, 0.3382113821138211, 0.33658536585365856, 0.3333333333333333, 0.3544715447154472, 0.5593495934959349, 0.4894308943089431, 0.46504065040650405, 0.4292682926829268, 0.4097560975609756, 0.3886178861788618, 0.3821138211382114, 0.3804878048780488, 0.4097560975609756, 0.3967479674796748, 0.4097560975609756, 0.7073170731707317, 0.9203252032520325, 0.9447154471544715, 0.9382113821138212, 0.8747967479674796, 0.567479674796748, 0.4764227642276423, 0.3105691056910569, 0.3073170731707317, 0.2991869918699187, 0.2959349593495935, 0.2959349593495935, 0.2959349593495935, 0.2926829268292683, 0.2894308943089431, 0.2910569105691057, 0.2926829268292683, 0.2910569105691057, 0.28780487804878047, 0.2894308943089431, 0.28780487804878047, 0.2894308943089431, 0.28780487804878047, 0.28292682926829266, 0.2845528455284553, 0.2861788617886179, 0.28780487804878047, 0.28780487804878047, 0.28780487804878047, 0.28780487804878047, 0.2861788617886179, 0.28780487804878047, 0.28780487804878047, 0.7073170731707317, 0.8308943089430895, 0.8780487804878049, 0.9235772357723577, 0.943089430894309, 0.9121951219512195, 0.8601626016260162, 0.7495934959349594, 0.6520325203252032, 0.5869918699186992, 0.45203252032520325, 0.3300813008130081, 0.3105691056910569, 0.3056910569105691, 0.3008130081300813, 0.3008130081300813, 0.2845528455284553, 0.2845528455284553, 0.2780487804878049, 0.27479674796747966, 0.27479674796747966, 0.27479674796747966, 0.2780487804878049, 0.2780487804878049, 0.2731707317073171, 0.2731707317073171, 0.2731707317073171, 0.2731707317073171, 0.27479674796747966, 0.2731707317073171, 0.2764227642276423, 0.2780487804878049, 0.32682926829268294, 0.45365853658536587, 0.45203252032520325, 0.44715447154471544, 0.42276422764227645, 0.6211382113821138, 0.6308943089430894, 0.6373983739837399, 0.640650406504065, 0.6666666666666666, 0.7121951219512195, 0.7886178861788617, 0.8130081300813008, 0.8504065040650407, 0.9235772357723577, 0.9040650406504065, 0.8455284552845529, 0.8113821138211382, 0.7333333333333333, 0.6796747967479675, 0.6455284552845528, 0.6373983739837399, 0.6325203252032521, 0.624390243902439, 0.6178861788617886, 0.5365853658536586, 0.42276422764227645, 0.41788617886178864, 0.4195121951219512, 0.36585365853658536, 0.2943089430894309, 0.2910569105691057, 0.2861788617886179, 0.27967479674796747, 0.27967479674796747, 0.27479674796747966, 0.2764227642276423, 0.2780487804878049, 0.2780487804878049, 0.2764227642276423, 0.2764227642276423, 0.2764227642276423, 0.2764227642276423, 0.2926829268292683, 0.3056910569105691, 0.5154471544715448, 0.7544715447154472, 0.8260162601626017, 0.848780487804878, 0.8715447154471545, 0.9203252032520325, 0.9495934959349593, 0.9317073170731708, 0.8910569105691057, 0.8634146341463415, 0.8292682926829268, 0.808130081300813, 0.7040650406504065, 0.3951219512195122, 0.37398373983739835, 0.2959349593495935, 0.2861788617886179, 0.2861788617886179, 0.2861788617886179, 0.2845528455284553, 0.2845528455284553, 0.2845528455284553, 0.2845528455284553, 0.2845528455284553, 0.2845528455284553, 0.2845528455284553, 0.28780487804878047, 0.28780487804878047, 0.28780487804878047, 0.28780487804878047, 0.28780487804878047, 0.8894308943089431, 0.7609756097560976, 0.2910569105691057, 0.2959349593495935, 0.2959349593495935, 0.2975609756097561, 0.2991869918699187, 0.2991869918699187, 0.3008130081300813, 0.3105691056910569, 0.32195121951219513, 0.33495934959349594, 0.3463414634146341, 0.36097560975609755, 0.383739837398374, 0.39186991869918697, 0.4016260162601626, 0.41300813008130083, 0.4292682926829268, 0.43089430894308944, 0.47479674796747967, 0.4943089430894309, 0.5089430894308943, 0.6195121951219512, 0.6292682926829268, 0.6097560975609756, 0.6536585365853659, 0.8455284552845529, 0.8894308943089431, 0.7869918699186992, 0.5284552845528455, 0.5252032520325203, 0.5203252032520326, 0.5219512195121951, 0.5235772357723577, 0.5284552845528455, 0.5284552845528455, 0.5300813008130081, 0.5349593495934959, 0.5447154471544715, 0.5788617886178862, 0.6113821138211382, 0.6699186991869919], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Porph_ging.gap.json b/pfam_gap_rates/Porph_ging.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..df79a5131e58aebfd45e1907ce6c25b387aee087
--- /dev/null
+++ b/pfam_gap_rates/Porph_ging.gap.json
@@ -0,0 +1 @@
+{"family": "Porph_ging", "n_seqs": 241, "length": 97, "gap_rates": [0.8464730290456431, 0.8464730290456431, 0.8423236514522822, 0.8381742738589212, 0.8381742738589212, 0.8381742738589212, 0.8381742738589212, 0.8381742738589212, 0.8381742738589212, 0.8381742738589212, 0.8381742738589212, 0.8381742738589212, 0.8340248962655602, 0.8340248962655602, 0.8340248962655602, 0.8340248962655602, 0.8340248962655602, 0.8340248962655602, 0.8340248962655602, 0.8340248962655602, 0.8340248962655602, 0.8340248962655602, 0.8340248962655602, 0.8340248962655602, 0.8340248962655602, 0.8298755186721992, 0.8257261410788381, 0.8257261410788381, 0.8174273858921162, 0.8174273858921162, 0.8174273858921162, 0.8215767634854771, 0.8215767634854771, 0.8340248962655602, 0.8464730290456431, 0.8589211618257261, 0.8796680497925311, 0.8755186721991701, 0.8713692946058091, 0.8713692946058091, 0.8713692946058091, 0.8713692946058091, 0.8713692946058091, 0.8796680497925311, 0.8838174273858921, 0.8464730290456431, 0.9128630705394191, 0.9128630705394191, 0.921161825726141, 0.9336099585062241, 0.9336099585062241, 0.946058091286307, 0.946058091286307, 0.946058091286307, 0.941908713692946, 0.9336099585062241, 0.9294605809128631, 0.921161825726141, 0.9128630705394191, 0.9128630705394191, 0.7800829875518672, 0.7717842323651453, 0.7634854771784232, 0.7385892116182573, 0.7012448132780082, 0.6390041493775933, 0.5394190871369294, 0.4854771784232365, 0.4190871369294606, 0.3817427385892116, 0.2821576763485477, 0.024896265560165973, 0.004149377593360996, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.004149377593360996, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.4605809128630705], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Pou.gap.json b/pfam_gap_rates/Pou.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f7dc5a296cc2d9351c040cd8e4f8543729d7bf2f
--- /dev/null
+++ b/pfam_gap_rates/Pou.gap.json
@@ -0,0 +1 @@
+{"family": "Pou", "n_seqs": 560, "length": 74, "gap_rates": [0.6660714285714285, 0.24107142857142858, 0.1125, 0.10535714285714286, 0.1, 0.09821428571428571, 0.09642857142857143, 0.09285714285714286, 0.09107142857142857, 0.08928571428571429, 0.0875, 0.0875, 0.08571428571428572, 0.08571428571428572, 0.08214285714285714, 0.08035714285714286, 0.07857142857142857, 0.07857142857142857, 0.07678571428571429, 0.075, 0.07142857142857142, 0.06964285714285715, 0.06785714285714285, 0.06607142857142857, 0.06428571428571428, 0.06428571428571428, 0.06428571428571428, 0.06607142857142857, 0.06607142857142857, 0.060714285714285714, 0.060714285714285714, 0.0625, 0.06428571428571428, 0.06785714285714285, 0.06428571428571428, 0.060714285714285714, 0.060714285714285714, 0.060714285714285714, 0.7785714285714286, 0.7803571428571429, 0.7785714285714286, 0.060714285714285714, 0.05714285714285714, 0.055357142857142855, 0.055357142857142855, 0.04642857142857143, 0.017857142857142856, 0.03214285714285714, 0.06607142857142857, 0.06607142857142857, 0.06428571428571428, 0.06428571428571428, 0.0625, 0.0625, 0.0625, 0.0625, 0.06428571428571428, 0.06428571428571428, 0.06428571428571428, 0.06428571428571428, 0.06428571428571428, 0.06428571428571428, 0.06428571428571428, 0.06428571428571428, 0.06428571428571428, 0.06428571428571428, 0.06428571428571428, 0.06607142857142857, 0.06607142857142857, 0.06607142857142857, 0.06607142857142857, 0.07321428571428572, 0.09107142857142857, 0.10892857142857143], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Ppx-GppA.gap.json b/pfam_gap_rates/Ppx-GppA.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f089575adb21755f96736197b8e5844834e5f0f7
--- /dev/null
+++ b/pfam_gap_rates/Ppx-GppA.gap.json
@@ -0,0 +1 @@
+{"family": "Ppx-GppA", "n_seqs": 2183, "length": 320, "gap_rates": [0.8405863490609253, 0.613834173156207, 0.5748969308291342, 0.5336692624828218, 0.5006871278057718, 0.4493815849748053, 0.38662391204764085, 0.34310581768208886, 0.30737517178195145, 0.9436555199267064, 0.8259276225377921, 0.21988089784699955, 0.19926706367384334, 0.1749885478699038, 0.15666513971598717, 0.13559322033898305, 0.12139257901969766, 0.10902427851580394, 0.08932661475034356, 0.07650022904260192, 0.06596426935409987, 0.05863490609253321, 0.0554283096655978, 0.053595968850206135, 0.05313788364635822, 0.054970224461749886, 0.05634448007329363, 0.9427393495190105, 0.0554283096655978, 0.06275767292716446, 0.05451213925790197, 0.0467246907924874, 0.04535043518094366, 0.9486944571690334, 0.03985341273476867, 0.038021071919377, 0.03710490151168117, 0.03710490151168117, 0.03710490151168117, 0.03573064590013743, 0.03527256069628951, 0.03527256069628951, 0.03389830508474576, 0.03435639028859368, 0.03435639028859368, 0.03389830508474576, 0.03344021988089785, 0.03298213467704993, 0.03252404947320202, 0.03160787906550618, 0.03252404947320202, 0.03252404947320202, 0.03344021988089785, 0.03160787906550618, 0.031149793861658268, 0.03252404947320202, 0.03160787906550618, 0.031149793861658268, 0.03160787906550618, 0.03664681630783326, 0.912963811268896, 0.9070087036188731, 0.03389830508474576, 0.03160787906550618, 0.03344021988089785, 0.031149793861658268, 0.029317453046266605, 0.02885936784241869, 0.028401282638570773, 0.027943197434722858, 0.027943197434722858, 0.027943197434722858, 0.027943197434722858, 0.027485112230874943, 0.028401282638570773, 0.027485112230874943, 0.027485112230874943, 0.027943197434722858, 0.027485112230874943, 0.027485112230874943, 0.027943197434722858, 0.027485112230874943, 0.027485112230874943, 0.02702702702702703, 0.028401282638570773, 0.029317453046266605, 0.03389830508474576, 0.038021071919377, 0.03618873110398534, 0.030691708657810353, 0.02702702702702703, 0.027943197434722858, 0.02656894182317911, 0.026110856619331196, 0.02656894182317911, 0.02656894182317911, 0.02565277141548328, 0.02565277141548328, 0.02656894182317911, 0.026110856619331196, 0.02656894182317911, 0.026110856619331196, 0.026110856619331196, 0.02565277141548328, 0.025194686211635363, 0.02565277141548328, 0.03389830508474576, 0.028401282638570773, 0.027485112230874943, 0.02885936784241869, 0.029317453046266605, 0.02977553825011452, 0.029317453046266605, 0.030691708657810353, 0.9317453046266606, 0.451213925790197, 0.2927164452588181, 0.03985341273476867, 0.02977553825011452, 0.030691708657810353, 0.031149793861658268, 0.052679798442510306, 0.0320659642693541, 0.025194686211635363, 0.025194686211635363, 0.023820430600091615, 0.024278515803939534, 0.023820430600091615, 0.024278515803939534, 0.024278515803939534, 0.025194686211635363, 0.025194686211635363, 0.025194686211635363, 0.025194686211635363, 0.026110856619331196, 0.02656894182317911, 0.027485112230874943, 0.09161704076958314, 0.03573064590013743, 0.8497480531378836, 0.858909757214842, 0.9010535959688502, 0.9322033898305084, 0.9409070087036189, 0.9207512597343106, 0.8813559322033898, 0.8552450755840586, 0.8236371965185525, 0.03664681630783326, 0.03710490151168117, 0.03893724232707284, 0.03618873110398534, 0.03481447549244159, 0.03298213467704993, 0.031149793861658268, 0.03160787906550618, 0.03160787906550618, 0.0320659642693541, 0.031149793861658268, 0.031149793861658268, 0.03160787906550618, 0.03160787906550618, 0.03160787906550618, 0.03435639028859368, 0.03847915712322492, 0.04214383875400825, 0.055886394869445716, 0.06917086578103528, 0.09024278515803939, 0.076042143838754, 0.07329363261566652, 0.07054512139257901, 0.9262482821804856, 0.9464040311497939, 0.8863948694457169, 0.07787448465414568, 0.07466788822721027, 0.07237746220797069, 0.06596426935409987, 0.06275767292716446, 0.05863490609253321, 0.055886394869445716, 0.05130554283096656, 0.05130554283096656, 0.04855703160787907, 0.04901511681172698, 0.0467246907924874, 0.08291342189647274, 0.07054512139257901, 0.07146129180027486, 0.06825469537333945, 0.0700870361887311, 0.9317453046266606, 0.907924874026569, 0.059092991296381125, 0.05451213925790197, 0.053595968850206135, 0.0554283096655978, 0.06459001374255612, 0.06184150251946862, 0.062299587723316535, 0.053595968850206135, 0.05726065048098947, 0.0641319285387082, 0.06825469537333945, 0.07146129180027486, 0.7416399450297756, 0.9051763628034815, 0.9340357306459002, 0.9234997709573981, 0.8483737975263399, 0.674301420064132, 0.4718277599633532, 0.13192853870819973, 0.08382959230416857, 0.06825469537333945, 0.053595968850206135, 0.05130554283096656, 0.04993128721942281, 0.06000916170407696, 0.06367384333486029, 0.052679798442510306, 0.050389372423270726, 0.050389372423270726, 0.050389372423270726, 0.04993128721942281, 0.04901511681172698, 0.04993128721942281, 0.05084745762711865, 0.05313788364635822, 0.053595968850206135, 0.05313788364635822, 0.053595968850206135, 0.053595968850206135, 0.060467246907924876, 0.33394411360513054, 0.2679798442510307, 0.4800732936326157, 0.6491067338524965, 0.7759963353183692, 0.9102153000458085, 0.6706367384333486, 0.5098488318827302, 0.45991754466330736, 0.22721026110856618, 0.0641319285387082, 0.05955107650022904, 0.05222171323866239, 0.05176362803481448, 0.052679798442510306, 0.05084745762711865, 0.05084745762711865, 0.049473202015574896, 0.04993128721942281, 0.049473202015574896, 0.054970224461749886, 0.055886394869445716, 0.053595968850206135, 0.05130554283096656, 0.05176362803481448, 0.05222171323866239, 0.05176362803481448, 0.053595968850206135, 0.05405405405405406, 0.09528172240036646, 0.06550618415025194, 0.05726065048098947, 0.0554283096655978, 0.05634448007329363, 0.054970224461749886, 0.055886394869445716, 0.05634448007329363, 0.054970224461749886, 0.054970224461749886, 0.0554283096655978, 0.05634448007329363, 0.05405405405405406, 0.05451213925790197, 0.05313788364635822, 0.05405405405405406, 0.05405405405405406, 0.05313788364635822, 0.052679798442510306, 0.053595968850206135, 0.053595968850206135, 0.053595968850206135, 0.05405405405405406, 0.05405405405405406, 0.05405405405405406, 0.05405405405405406, 0.053595968850206135, 0.05405405405405406, 0.054970224461749886, 0.05634448007329363, 0.06459001374255612, 0.06917086578103528, 0.07191937700412276, 0.07466788822721027, 0.08108108108108109, 0.0842876775080165, 0.08566193311956023, 0.08886852954649564, 0.08886852954649564, 0.09207512597343105, 0.09528172240036646, 0.1016949152542373, 0.11039853412734768, 0.11223087494273935, 0.11589555657352267, 0.11818598259276225, 0.12185066422354558, 0.12643151626202473, 0.13925790196976637, 0.16720109940448924, 0.19422812643151627, 0.24644983967017867, 0.3298213467704993, 0.5061841502519469, 0.7924874026568942, 0.9395327530920752], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Prenylcys_lyase.gap.json b/pfam_gap_rates/Prenylcys_lyase.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..257ac2757eb55ca174c8e66a3e8b170d7f280cdf
--- /dev/null
+++ b/pfam_gap_rates/Prenylcys_lyase.gap.json
@@ -0,0 +1 @@
+{"family": "Prenylcys_lyase", "n_seqs": 297, "length": 440, "gap_rates": [0.7845117845117845, 0.7407407407407407, 0.6498316498316499, 0.5858585858585859, 0.5252525252525253, 0.4781144781144781, 0.37373737373737376, 0.265993265993266, 0.24915824915824916, 0.24579124579124578, 0.2356902356902357, 0.2255892255892256, 0.2255892255892256, 0.2255892255892256, 0.2222222222222222, 0.21885521885521886, 0.21885521885521886, 0.21885521885521886, 0.21885521885521886, 0.21885521885521886, 0.8787878787878788, 0.21885521885521886, 0.21548821548821548, 0.21548821548821548, 0.21212121212121213, 0.20875420875420875, 0.20875420875420875, 0.20875420875420875, 0.21212121212121213, 0.21212121212121213, 0.2053872053872054, 0.20875420875420875, 0.2053872053872054, 0.19865319865319866, 0.19528619528619529, 0.19528619528619529, 0.1919191919191919, 0.19528619528619529, 0.17845117845117844, 0.1750841750841751, 0.1750841750841751, 0.1717171717171717, 0.5757575757575758, 0.5555555555555556, 0.2222222222222222, 0.16498316498316498, 0.16161616161616163, 0.15488215488215487, 0.15151515151515152, 0.15151515151515152, 0.15488215488215487, 0.15151515151515152, 0.15151515151515152, 0.15488215488215487, 0.15488215488215487, 0.15151515151515152, 0.15151515151515152, 0.15488215488215487, 0.15488215488215487, 0.15824915824915825, 0.15824915824915825, 0.8282828282828283, 0.7508417508417509, 0.734006734006734, 0.16161616161616163, 0.16161616161616163, 0.15824915824915825, 0.15151515151515152, 0.15151515151515152, 0.14814814814814814, 0.14814814814814814, 0.14814814814814814, 0.14814814814814814, 0.14814814814814814, 0.1414141414141414, 0.1414141414141414, 0.1414141414141414, 0.1414141414141414, 0.1447811447811448, 0.14814814814814814, 0.8956228956228957, 0.1447811447811448, 0.14814814814814814, 0.1414141414141414, 0.13804713804713806, 0.13804713804713806, 0.13804713804713806, 0.13804713804713806, 0.13468013468013468, 0.13468013468013468, 0.12794612794612795, 0.12794612794612795, 0.12457912457912458, 0.12794612794612795, 0.12794612794612795, 0.13131313131313133, 0.13131313131313133, 0.12794612794612795, 0.13131313131313133, 0.13804713804713806, 0.13131313131313133, 0.6161616161616161, 0.12794612794612795, 0.12794612794612795, 0.12121212121212122, 0.9292929292929293, 0.12121212121212122, 0.12121212121212122, 0.12121212121212122, 0.12121212121212122, 0.12457912457912458, 0.12121212121212122, 0.12121212121212122, 0.12121212121212122, 0.13131313131313133, 0.13468013468013468, 0.13468013468013468, 0.13468013468013468, 0.5488215488215489, 0.5218855218855218, 0.13131313131313133, 0.13468013468013468, 0.12794612794612795, 0.12121212121212122, 0.12121212121212122, 0.12121212121212122, 0.12121212121212122, 0.12121212121212122, 0.12121212121212122, 0.12121212121212122, 0.12121212121212122, 0.12121212121212122, 0.12121212121212122, 0.12457912457912458, 0.12457912457912458, 0.12457912457912458, 0.12794612794612795, 0.12457912457912458, 0.12457912457912458, 0.12457912457912458, 0.12457912457912458, 0.12457912457912458, 0.9461279461279462, 0.9461279461279462, 0.12457912457912458, 0.3367003367003367, 0.12794612794612795, 0.13131313131313133, 0.12794612794612795, 0.12457912457912458, 0.12794612794612795, 0.12794612794612795, 0.12794612794612795, 0.12794612794612795, 0.12794612794612795, 0.12794612794612795, 0.12794612794612795, 0.12794612794612795, 0.12794612794612795, 0.5016835016835017, 0.8181818181818182, 0.9023569023569024, 0.8518518518518519, 0.7744107744107744, 0.32996632996632996, 0.25925925925925924, 0.24242424242424243, 0.24242424242424243, 0.2962962962962963, 0.3265993265993266, 0.2895622895622896, 0.2222222222222222, 0.16161616161616163, 0.15488215488215487, 0.15824915824915825, 0.9292929292929293, 0.9427609427609428, 0.9494949494949495, 0.9326599326599326, 0.9225589225589226, 0.5252525252525253, 0.5016835016835017, 0.835016835016835, 0.9124579124579124, 0.9259259259259259, 0.8956228956228957, 0.7912457912457912, 0.3939393939393939, 0.21885521885521886, 0.13804713804713806, 0.13468013468013468, 0.13131313131313133, 0.12794612794612795, 0.12457912457912458, 0.12457912457912458, 0.12457912457912458, 0.12457912457912458, 0.12457912457912458, 0.12457912457912458, 0.12457912457912458, 0.12457912457912458, 0.12457912457912458, 0.12457912457912458, 0.12457912457912458, 0.12457912457912458, 0.12457912457912458, 0.12457912457912458, 0.12457912457912458, 0.9191919191919192, 0.7171717171717171, 0.6936026936026936, 0.13131313131313133, 0.13131313131313133, 0.13131313131313133, 0.13468013468013468, 0.13804713804713806, 0.5925925925925926, 0.5589225589225589, 0.5420875420875421, 0.15151515151515152, 0.15824915824915825, 0.15151515151515152, 0.15151515151515152, 0.19528619528619529, 0.7609427609427609, 0.20875420875420875, 0.16498316498316498, 0.13804713804713806, 0.13468013468013468, 0.13468013468013468, 0.13468013468013468, 0.7441077441077442, 0.6026936026936027, 0.12457912457912458, 0.12457912457912458, 0.12457912457912458, 0.12794612794612795, 0.12794612794612795, 0.12794612794612795, 0.13131313131313133, 0.13131313131313133, 0.13131313131313133, 0.13131313131313133, 0.13131313131313133, 0.6026936026936027, 0.835016835016835, 0.5589225589225589, 0.13131313131313133, 0.13131313131313133, 0.13131313131313133, 0.13131313131313133, 0.13131313131313133, 0.12794612794612795, 0.12794612794612795, 0.12794612794612795, 0.12794612794612795, 0.8148148148148148, 0.2828282828282828, 0.2053872053872054, 0.1750841750841751, 0.14814814814814814, 0.1447811447811448, 0.1414141414141414, 0.13131313131313133, 0.13131313131313133, 0.13131313131313133, 0.13131313131313133, 0.13131313131313133, 0.13131313131313133, 0.13468013468013468, 0.13468013468013468, 0.13468013468013468, 0.13804713804713806, 0.18181818181818182, 0.7104377104377104, 0.7508417508417509, 0.898989898989899, 0.9326599326599326, 0.9494949494949495, 0.9124579124579124, 0.8922558922558923, 0.7407407407407407, 0.6801346801346801, 0.19528619528619529, 0.16835016835016836, 0.16835016835016836, 0.1717171717171717, 0.14814814814814814, 0.15824915824915825, 0.15488215488215487, 0.1414141414141414, 0.7777777777777778, 0.7474747474747475, 0.26262626262626265, 0.27946127946127947, 0.28619528619528617, 0.26262626262626265, 0.25252525252525254, 0.9494949494949495, 0.797979797979798, 0.4074074074074074, 0.4006734006734007, 0.3468013468013468, 0.31313131313131315, 0.30303030303030304, 0.2962962962962963, 0.25252525252525254, 0.265993265993266, 0.5353535353535354, 0.3569023569023569, 0.28619528619528617, 0.23232323232323232, 0.20202020202020202, 0.1717171717171717, 0.265993265993266, 0.12794612794612795, 0.12457912457912458, 0.12457912457912458, 0.12457912457912458, 0.12121212121212122, 0.12121212121212122, 0.12121212121212122, 0.12121212121212122, 0.12121212121212122, 0.12794612794612795, 0.12794612794612795, 0.13804713804713806, 0.13131313131313133, 0.13131313131313133, 0.12457912457912458, 0.12457912457912458, 0.12457912457912458, 0.12121212121212122, 0.12794612794612795, 0.12794612794612795, 0.12794612794612795, 0.12794612794612795, 0.8114478114478114, 0.7104377104377104, 0.1447811447811448, 0.18518518518518517, 0.18181818181818182, 0.15488215488215487, 0.15488215488215487, 0.15824915824915825, 0.13468013468013468, 0.7609427609427609, 0.7676767676767676, 0.7676767676767676, 0.7845117845117845, 0.7946127946127947, 0.8047138047138047, 0.8249158249158249, 0.8720538720538721, 0.8855218855218855, 0.936026936026936, 0.9124579124579124, 0.8754208754208754, 0.8451178451178452, 0.8181818181818182, 0.8013468013468014, 0.7912457912457912, 0.7811447811447811, 0.7676767676767676, 0.7609427609427609, 0.7575757575757576, 0.13804713804713806, 0.13468013468013468, 0.13468013468013468, 0.13804713804713806, 0.13468013468013468, 0.8518518518518519, 0.15151515151515152, 0.13131313131313133, 0.38047138047138046, 0.37373737373737376, 0.9191919191919192, 0.9057239057239057, 0.1414141414141414, 0.13804713804713806, 0.1414141414141414, 0.5185185185185185, 0.13468013468013468, 0.13131313131313133, 0.13131313131313133, 0.13468013468013468, 0.13131313131313133, 0.13131313131313133, 0.12794612794612795, 0.13131313131313133, 0.13131313131313133, 0.8787878787878788, 0.13468013468013468, 0.13468013468013468, 0.13468013468013468, 0.13468013468013468, 0.13468013468013468, 0.13468013468013468, 0.13468013468013468, 0.13468013468013468, 0.13468013468013468, 0.13468013468013468, 0.13468013468013468, 0.13468013468013468, 0.13131313131313133, 0.13468013468013468, 0.13468013468013468, 0.13468013468013468, 0.13468013468013468, 0.13468013468013468, 0.13468013468013468, 0.13804713804713806, 0.13804713804713806, 0.1447811447811448, 0.1447811447811448, 0.14814814814814814, 0.14814814814814814, 0.15488215488215487, 0.16498316498316498, 0.17845117845117844, 0.1919191919191919, 0.19865319865319866, 0.23905723905723905, 0.3602693602693603, 0.4006734006734007, 0.468013468013468, 0.5117845117845118, 0.5589225589225589, 0.6531986531986532, 0.6868686868686869, 0.7542087542087542, 0.7643097643097643, 0.7878787878787878, 0.8047138047138047, 0.8249158249158249, 0.8552188552188552, 0.8720538720538721, 0.8754208754208754, 0.8787878787878788, 0.8821548821548821], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Prenyltransf.gap.json b/pfam_gap_rates/Prenyltransf.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..82fefe9154aa080395867a2d4d62f4d2ef8a7765
--- /dev/null
+++ b/pfam_gap_rates/Prenyltransf.gap.json
@@ -0,0 +1 @@
+{"family": "Prenyltransf", "n_seqs": 3131, "length": 235, "gap_rates": [0.16767805812839348, 0.09230277866496327, 0.09038645800063877, 0.09038645800063877, 0.08974768444586394, 0.08974768444586394, 0.08974768444586394, 0.08942829766847653, 0.08942829766847653, 0.08942829766847653, 0.08942829766847653, 0.0891089108910891, 0.0891089108910891, 0.7901628872564675, 0.0910252315554136, 0.09198339188757586, 0.08655381667198978, 0.09038645800063877, 0.221015649952092, 0.08367933567550304, 0.0830405621207282, 0.0830405621207282, 0.08208240178856595, 0.08176301501117854, 0.08176301501117854, 0.08144362823379112, 0.0811242414564037, 0.08048546790162887, 0.07920792079207921, 0.07824976045991695, 0.07856914723730438, 0.07888853401469179, 0.07952730756946662, 0.07824976045991695, 0.07824976045991695, 0.07856914723730438, 0.07697221335036729, 0.07601405301820505, 0.07537527946343021, 0.07505589268604279, 0.07473650590865538, 0.07473650590865538, 0.07409773235388055, 0.07409773235388055, 0.07345895879910572, 0.07345895879910572, 0.07377834557649314, 0.07473650590865538, 0.07473650590865538, 0.07505589268604279, 0.07377834557649314, 0.07377834557649314, 0.07345895879910572, 0.07345895879910572, 0.07345895879910572, 0.07377834557649314, 0.07345895879910572, 0.07345895879910572, 0.07345895879910572, 0.07345895879910572, 0.07409773235388055, 0.07377834557649314, 0.07313957202171831, 0.07026509102523155, 0.07026509102523155, 0.06994570424784415, 0.06994570424784415, 0.26541041200894283, 0.8827850526988182, 0.8894921750239541, 0.8808687320344938, 0.23794314915362505, 0.458958799105717, 0.0929415522197381, 0.09198339188757586, 0.13126796550622805, 0.10986905142127117, 0.11561801341424464, 0.26988182689236667, 0.21686362184605557, 0.09358032577451293, 0.07090386458000639, 0.06930693069306931, 0.06802938358351965, 0.06675183647396998, 0.8997125519003514, 0.06611306291919515, 0.0651549025870329, 0.06579367614180773, 0.06579367614180773, 0.06611306291919515, 0.06579367614180773, 0.06643244969658256, 0.06643244969658256, 0.06643244969658256, 0.06739061002874482, 0.06770999680613222, 0.07058447780261898, 0.06994570424784415, 0.06739061002874482, 0.06611306291919515, 0.06611306291919515, 0.06643244969658256, 0.06611306291919515, 0.06770999680613222, 0.06802938358351965, 0.06834877036090706, 0.06739061002874482, 0.06707122325135739, 0.06675183647396998, 0.06802938358351965, 0.06802938358351965, 0.06611306291919515, 0.06419674225487065, 0.06355796870009582, 0.6537847333120409, 0.07761098690514212, 0.11434046630469498, 0.09645480677099968, 0.27786649632705207, 0.04950495049504951, 0.04663046949856276, 0.04599169594378793, 0.045352922389013096, 0.045352922389013096, 0.044714148834238264, 0.04407537527946343, 0.04407537527946343, 0.04407537527946343, 0.04311721494730118, 0.04247844139252635, 0.04279782816991377, 0.04279782816991377, 0.04311721494730118, 0.04279782816991377, 0.046311082721175345, 0.04822740338549984, 0.04918556371766209, 0.05078249760459917, 0.050463110827211756, 0.047908016608112426, 0.04758862983072501, 0.047908016608112426, 0.07633343979559246, 0.06643244969658256, 0.20824017885659535, 0.19610348131587352, 0.1564995209198339, 0.10731395720217184, 0.19227083998722452, 0.14500159693388695, 0.1485148514851485, 0.18524433088470138, 0.9188757585435963, 0.9262216544235069, 0.9227083998722453, 0.914084956882785, 0.1402107952730757, 0.11785372085595656, 0.0891089108910891, 0.07569466624081762, 0.05078249760459917, 0.046311082721175345, 0.044714148834238264, 0.04439476205685085, 0.044714148834238264, 0.043755988502076015, 0.043755988502076015, 0.043755988502076015, 0.0434366017246886, 0.04694985627595018, 0.42574257425742573, 0.1481954647077611, 0.21814116895560523, 0.8977962312360268, 0.32864899393165126, 0.0415202810603641, 0.04088150750558927, 0.04056212072820185, 0.04088150750558927, 0.04088150750558927, 0.04024273395081444, 0.04056212072820185, 0.04024273395081444, 0.04024273395081444, 0.03992334717342702, 0.04567230916640051, 0.042159054615138934, 0.0415202810603641, 0.0434366017246886, 0.04024273395081444, 0.03992334717342702, 0.04056212072820185, 0.04088150750558927, 0.04088150750558927, 0.04088150750558927, 0.0415202810603641, 0.04088150750558927, 0.05876716703928457, 0.04407537527946343, 0.047269243053337594, 0.04694985627595018, 0.04758862983072501, 0.931651229639093, 0.04854679016288726, 0.049824337272436924, 0.049824337272436924, 0.050463110827211756, 0.05014372404982434, 0.05078249760459917, 0.05237943149153625, 0.05780900670712232, 0.055253912488023, 0.05110188438198659, 0.051421271159374005, 0.05206004471414884, 0.05237943149153625, 0.053018205046311086, 0.053018205046311086, 0.0533375918236985, 0.05429575215586075, 0.05461513893324817, 0.055892686042797825, 0.055892686042797825, 0.05685084637496007, 0.05780900670712232, 0.058447780261897155, 0.05972532737144682, 0.06611306291919515, 0.08240178856595337, 0.12296390929415522, 0.1481954647077611, 0.1778984350047908, 0.19674225487064836, 0.20983711274353242], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/ProQ.gap.json b/pfam_gap_rates/ProQ.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..bcd28be47057e92055c257add26f4864048a668b
--- /dev/null
+++ b/pfam_gap_rates/ProQ.gap.json
@@ -0,0 +1 @@
+{"family": "ProQ", "n_seqs": 191, "length": 112, "gap_rates": [0.6335078534031413, 0.5130890052356021, 0.3769633507853403, 0.2670157068062827, 0.2094240837696335, 0.19895287958115182, 0.17277486910994763, 0.16753926701570682, 0.15706806282722513, 0.14136125654450263, 0.14136125654450263, 0.14136125654450263, 0.13612565445026178, 0.13612565445026178, 0.13089005235602094, 0.21465968586387435, 0.1256544502617801, 0.1256544502617801, 0.11518324607329843, 0.10471204188481675, 0.18324607329842932, 0.2879581151832461, 0.4397905759162304, 0.837696335078534, 0.08900523560209424, 0.06806282722513089, 0.06282722513089005, 0.06282722513089005, 0.05759162303664921, 0.05759162303664921, 0.05759162303664921, 0.05759162303664921, 0.05759162303664921, 0.05759162303664921, 0.05759162303664921, 0.05759162303664921, 0.05759162303664921, 0.05759162303664921, 0.9057591623036649, 0.8481675392670157, 0.518324607329843, 0.41361256544502617, 0.2879581151832461, 0.13612565445026178, 0.05759162303664921, 0.05235602094240838, 0.041884816753926704, 0.03664921465968586, 0.031413612565445025, 0.03664921465968586, 0.031413612565445025, 0.031413612565445025, 0.015706806282722512, 0.015706806282722512, 0.010471204188481676, 0.010471204188481676, 0.010471204188481676, 0.010471204188481676, 0.010471204188481676, 0.005235602094240838, 0.005235602094240838, 0.005235602094240838, 0.005235602094240838, 0.005235602094240838, 0.005235602094240838, 0.005235602094240838, 0.005235602094240838, 0.005235602094240838, 0.005235602094240838, 0.0, 0.0, 0.0, 0.010471204188481676, 0.010471204188481676, 0.010471204188481676, 0.010471204188481676, 0.010471204188481676, 0.010471204188481676, 0.010471204188481676, 0.010471204188481676, 0.010471204188481676, 0.010471204188481676, 0.010471204188481676, 0.010471204188481676, 0.010471204188481676, 0.010471204188481676, 0.010471204188481676, 0.010471204188481676, 0.010471204188481676, 0.015706806282722512, 0.015706806282722512, 0.015706806282722512, 0.015706806282722512, 0.015706806282722512, 0.015706806282722512, 0.020942408376963352, 0.020942408376963352, 0.031413612565445025, 0.031413612565445025, 0.03664921465968586, 0.05759162303664921, 0.07853403141361257, 0.08900523560209424, 0.09424083769633508, 0.1099476439790576, 0.1256544502617801, 0.1518324607329843, 0.20418848167539266, 0.24607329842931938, 0.33507853403141363, 0.47643979057591623, 0.93717277486911], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Pro_racemase.gap.json b/pfam_gap_rates/Pro_racemase.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..2a047be9fdd7323fca1bae5549ccd8034ff0bb20
--- /dev/null
+++ b/pfam_gap_rates/Pro_racemase.gap.json
@@ -0,0 +1 @@
+{"family": "Pro_racemase", "n_seqs": 586, "length": 340, "gap_rates": [0.5631399317406144, 0.16382252559726962, 0.11433447098976109, 0.08873720136518772, 0.08873720136518772, 0.09897610921501707, 0.08873720136518772, 0.08703071672354949, 0.08703071672354949, 0.08703071672354949, 0.08703071672354949, 0.08703071672354949, 0.08532423208191127, 0.08532423208191127, 0.08532423208191127, 0.09215017064846416, 0.09044368600682594, 0.08873720136518772, 0.08703071672354949, 0.08532423208191127, 0.08532423208191127, 0.08532423208191127, 0.08361774744027303, 0.10238907849829351, 0.08532423208191127, 0.07849829351535836, 0.07679180887372014, 0.07508532423208192, 0.07679180887372014, 0.07679180887372014, 0.07679180887372014, 0.07679180887372014, 0.07508532423208192, 0.07508532423208192, 0.07679180887372014, 0.07508532423208192, 0.13310580204778158, 0.07337883959044368, 0.07337883959044368, 0.07337883959044368, 0.07337883959044368, 0.07508532423208192, 0.07337883959044368, 0.07337883959044368, 0.07167235494880546, 0.07167235494880546, 0.07167235494880546, 0.07337883959044368, 0.07337883959044368, 0.07337883959044368, 0.07337883959044368, 0.07337883959044368, 0.07508532423208192, 0.06996587030716724, 0.06996587030716724, 0.06825938566552901, 0.06996587030716724, 0.06996587030716724, 0.06825938566552901, 0.06655290102389079, 0.06484641638225255, 0.06655290102389079, 0.06996587030716724, 0.07167235494880546, 0.07337883959044368, 0.06825938566552901, 0.06825938566552901, 0.06655290102389079, 0.06655290102389079, 0.06655290102389079, 0.06655290102389079, 0.06655290102389079, 0.06655290102389079, 0.06484641638225255, 0.06484641638225255, 0.06484641638225255, 0.06484641638225255, 0.06313993174061433, 0.06313993174061433, 0.06313993174061433, 0.06484641638225255, 0.06143344709897611, 0.06143344709897611, 0.06313993174061433, 0.06313993174061433, 0.06313993174061433, 0.06313993174061433, 0.06313993174061433, 0.06313993174061433, 0.06313993174061433, 0.06313993174061433, 0.06143344709897611, 0.06143344709897611, 0.06143344709897611, 0.06313993174061433, 0.06313993174061433, 0.06313993174061433, 0.06484641638225255, 0.06484641638225255, 0.06825938566552901, 0.06825938566552901, 0.06996587030716724, 0.06825938566552901, 0.9027303754266212, 0.9351535836177475, 0.9436860068259386, 0.9488054607508533, 0.9368600682593856, 0.9180887372013652, 0.8617747440273038, 0.06825938566552901, 0.06996587030716724, 0.07167235494880546, 0.3430034129692833, 0.15017064846416384, 0.1416382252559727, 0.1348122866894198, 0.06313993174061433, 0.06313993174061433, 0.06313993174061433, 0.06313993174061433, 0.059726962457337884, 0.059726962457337884, 0.059726962457337884, 0.059726962457337884, 0.059726962457337884, 0.059726962457337884, 0.059726962457337884, 0.059726962457337884, 0.06143344709897611, 0.06143344709897611, 0.059726962457337884, 0.059726962457337884, 0.06143344709897611, 0.9351535836177475, 0.9488054607508533, 0.9402730375426621, 0.8993174061433447, 0.15358361774744028, 0.15187713310580206, 0.15017064846416384, 0.14505119453924914, 0.06313993174061433, 0.06313993174061433, 0.06313993174061433, 0.06313993174061433, 0.06484641638225255, 0.06484641638225255, 0.06313993174061433, 0.06143344709897611, 0.06143344709897611, 0.06143344709897611, 0.05802047781569966, 0.059726962457337884, 0.06825938566552901, 0.06996587030716724, 0.06143344709897611, 0.05802047781569966, 0.059726962457337884, 0.06313993174061433, 0.06655290102389079, 0.08020477815699659, 0.08873720136518772, 0.06655290102389079, 0.09897610921501707, 0.06313993174061433, 0.06484641638225255, 0.06143344709897611, 0.059726962457337884, 0.059726962457337884, 0.06143344709897611, 0.06143344709897611, 0.06313993174061433, 0.06313993174061433, 0.06313993174061433, 0.059726962457337884, 0.059726962457337884, 0.059726962457337884, 0.059726962457337884, 0.059726962457337884, 0.06143344709897611, 0.06143344709897611, 0.06143344709897611, 0.06143344709897611, 0.1348122866894198, 0.1416382252559727, 0.07337883959044368, 0.06825938566552901, 0.06825938566552901, 0.06825938566552901, 0.06825938566552901, 0.07167235494880546, 0.06996587030716724, 0.06996587030716724, 0.06996587030716724, 0.06996587030716724, 0.06996587030716724, 0.06996587030716724, 0.06996587030716724, 0.07167235494880546, 0.07167235494880546, 0.07337883959044368, 0.07337883959044368, 0.07167235494880546, 0.07167235494880546, 0.06996587030716724, 0.06996587030716724, 0.06996587030716724, 0.06996587030716724, 0.07167235494880546, 0.07167235494880546, 0.06996587030716724, 0.17406143344709898, 0.16723549488054607, 0.16552901023890784, 0.1621160409556314, 0.08191126279863481, 0.07679180887372014, 0.08020477815699659, 0.12116040955631399, 0.08361774744027303, 0.07679180887372014, 0.07849829351535836, 0.09215017064846416, 0.07167235494880546, 0.06655290102389079, 0.06484641638225255, 0.06655290102389079, 0.06655290102389079, 0.06484641638225255, 0.06313993174061433, 0.06313993174061433, 0.06313993174061433, 0.06143344709897611, 0.06143344709897611, 0.059726962457337884, 0.06143344709897611, 0.06484641638225255, 0.22184300341296928, 0.13651877133105803, 0.773037542662116, 0.9419795221843004, 0.89419795221843, 0.6723549488054608, 0.06996587030716724, 0.06313993174061433, 0.059726962457337884, 0.059726962457337884, 0.059726962457337884, 0.059726962457337884, 0.059726962457337884, 0.05631399317406143, 0.05802047781569966, 0.05460750853242321, 0.052901023890784986, 0.05802047781569966, 0.06313993174061433, 0.06143344709897611, 0.06143344709897611, 0.06143344709897611, 0.06143344709897611, 0.06143344709897611, 0.06143344709897611, 0.06143344709897611, 0.06143344709897611, 0.06143344709897611, 0.06143344709897611, 0.06143344709897611, 0.06143344709897611, 0.059726962457337884, 0.059726962457337884, 0.059726962457337884, 0.059726962457337884, 0.059726962457337884, 0.06313993174061433, 0.06484641638225255, 0.06313993174061433, 0.06313993174061433, 0.06484641638225255, 0.06825938566552901, 0.06825938566552901, 0.06484641638225255, 0.06313993174061433, 0.06484641638225255, 0.06484641638225255, 0.06484641638225255, 0.06484641638225255, 0.06484641638225255, 0.06484641638225255, 0.06484641638225255, 0.06484641638225255, 0.06655290102389079, 0.06825938566552901, 0.06825938566552901, 0.06825938566552901, 0.06825938566552901, 0.06825938566552901, 0.06825938566552901, 0.06825938566552901, 0.11774744027303755, 0.1296928327645051, 0.1296928327645051, 0.13822525597269625, 0.11433447098976109, 0.1075085324232082, 0.10238907849829351, 0.09726962457337884, 0.09556313993174062, 0.08703071672354949, 0.10238907849829351, 0.08020477815699659, 0.07679180887372014, 0.07337883959044368, 0.06825938566552901, 0.06825938566552901, 0.06825938566552901, 0.06825938566552901, 0.06996587030716724, 0.07167235494880546, 0.07167235494880546, 0.07167235494880546, 0.07167235494880546, 0.07167235494880546, 0.07167235494880546, 0.07167235494880546, 0.07167235494880546, 0.07167235494880546, 0.07337883959044368, 0.07508532423208192, 0.07508532423208192, 0.07679180887372014, 0.07849829351535836, 0.08191126279863481, 0.10068259385665529, 0.11262798634812286, 0.12798634812286688, 0.13993174061433447, 0.14505119453924914, 0.15017064846416384, 0.6416382252559727], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PsiF_repeat.gap.json b/pfam_gap_rates/PsiF_repeat.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..88d770b530abf3d4295cd048e9ec6e1e682d7e25
--- /dev/null
+++ b/pfam_gap_rates/PsiF_repeat.gap.json
@@ -0,0 +1 @@
+{"family": "PsiF_repeat", "n_seqs": 156, "length": 34, "gap_rates": [0.782051282051282, 0.23717948717948717, 0.1282051282051282, 0.11538461538461539, 0.10897435897435898, 0.10897435897435898, 0.08333333333333333, 0.07051282051282051, 0.05128205128205128, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.00641025641025641, 0.3974358974358974, 0.391025641025641, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.00641025641025641, 0.07692307692307693, 0.17307692307692307], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PspA_IM30.gap.json b/pfam_gap_rates/PspA_IM30.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..5254a61dbae30acf072b722993591d2eebe8c718
--- /dev/null
+++ b/pfam_gap_rates/PspA_IM30.gap.json
@@ -0,0 +1 @@
+{"family": "PspA_IM30", "n_seqs": 1104, "length": 255, "gap_rates": [0.3432971014492754, 0.19384057971014493, 0.13677536231884058, 0.09601449275362318, 0.0806159420289855, 0.07336956521739131, 0.07155797101449275, 0.07065217391304347, 0.0625, 0.0625, 0.06068840579710145, 0.057971014492753624, 0.057971014492753624, 0.057065217391304345, 0.057971014492753624, 0.05615942028985507, 0.05434782608695652, 0.05253623188405797, 0.050724637681159424, 0.050724637681159424, 0.04800724637681159, 0.04710144927536232, 0.04528985507246377, 0.044384057971014496, 0.043478260869565216, 0.9121376811594203, 0.9103260869565217, 0.03894927536231884, 0.03713768115942029, 0.036231884057971016, 0.03260869565217391, 0.03260869565217391, 0.03170289855072464, 0.029891304347826088, 0.02717391304347826, 0.026268115942028984, 0.022644927536231884, 0.020833333333333332, 0.019021739130434784, 0.017210144927536232, 0.017210144927536232, 0.017210144927536232, 0.015398550724637682, 0.015398550724637682, 0.01358695652173913, 0.01358695652173913, 0.01358695652173913, 0.01358695652173913, 0.01358695652173913, 0.012681159420289856, 0.01177536231884058, 0.01177536231884058, 0.01177536231884058, 0.01177536231884058, 0.01177536231884058, 0.010869565217391304, 0.009963768115942028, 0.009963768115942028, 0.010869565217391304, 0.010869565217391304, 0.010869565217391304, 0.01177536231884058, 0.012681159420289856, 0.012681159420289856, 0.012681159420289856, 0.01177536231884058, 0.01177536231884058, 0.01177536231884058, 0.01177536231884058, 0.01177536231884058, 0.01177536231884058, 0.009963768115942028, 0.009963768115942028, 0.009963768115942028, 0.009963768115942028, 0.009963768115942028, 0.009963768115942028, 0.009963768115942028, 0.010869565217391304, 0.01177536231884058, 0.009963768115942028, 0.010869565217391304, 0.012681159420289856, 0.8297101449275363, 0.8306159420289855, 0.8315217391304348, 0.8315217391304348, 0.8577898550724637, 0.8623188405797102, 0.8641304347826086, 0.8623188405797102, 0.8577898550724637, 0.832427536231884, 0.8315217391304348, 0.8315217391304348, 0.8306159420289855, 0.8288043478260869, 0.016304347826086956, 0.010869565217391304, 0.010869565217391304, 0.01177536231884058, 0.01177536231884058, 0.01177536231884058, 0.01177536231884058, 0.01177536231884058, 0.012681159420289856, 0.012681159420289856, 0.01358695652173913, 0.01358695652173913, 0.01358695652173913, 0.01358695652173913, 0.01358695652173913, 0.012681159420289856, 0.01358695652173913, 0.01358695652173913, 0.01358695652173913, 0.01358695652173913, 0.01358695652173913, 0.01358695652173913, 0.01358695652173913, 0.01358695652173913, 0.01358695652173913, 0.01358695652173913, 0.01358695652173913, 0.014492753623188406, 0.014492753623188406, 0.014492753623188406, 0.01358695652173913, 0.01358695652173913, 0.015398550724637682, 0.015398550724637682, 0.015398550724637682, 0.016304347826086956, 0.021739130434782608, 0.020833333333333332, 0.022644927536231884, 0.02355072463768116, 0.02355072463768116, 0.025362318840579712, 0.02355072463768116, 0.025362318840579712, 0.026268115942028984, 0.025362318840579712, 0.026268115942028984, 0.026268115942028984, 0.026268115942028984, 0.02717391304347826, 0.028985507246376812, 0.028985507246376812, 0.03170289855072464, 0.03351449275362319, 0.03351449275362319, 0.034420289855072464, 0.036231884057971016, 0.034420289855072464, 0.036231884057971016, 0.036231884057971016, 0.03894927536231884, 0.041666666666666664, 0.04076086956521739, 0.04076086956521739, 0.03894927536231884, 0.04076086956521739, 0.041666666666666664, 0.04710144927536232, 0.04710144927536232, 0.04891304347826087, 0.04710144927536232, 0.05253623188405797, 0.0552536231884058, 0.05344202898550725, 0.0552536231884058, 0.05615942028985507, 0.057065217391304345, 0.058876811594202896, 0.7282608695652174, 0.9130434782608695, 0.6557971014492754, 0.059782608695652176, 0.05434782608695652, 0.051630434782608696, 0.05344202898550725, 0.0552536231884058, 0.05344202898550725, 0.05253623188405797, 0.05253623188405797, 0.05253623188405797, 0.05344202898550725, 0.0552536231884058, 0.05615942028985507, 0.0552536231884058, 0.057971014492753624, 0.06068840579710145, 0.059782608695652176, 0.059782608695652176, 0.06068840579710145, 0.06068840579710145, 0.06068840579710145, 0.06068840579710145, 0.06068840579710145, 0.06068840579710145, 0.0625, 0.06431159420289854, 0.07246376811594203, 0.08605072463768115, 0.07608695652173914, 0.08152173913043478, 0.4230072463768116, 0.8097826086956522, 0.8677536231884058, 0.8985507246376812, 0.927536231884058, 0.9411231884057971, 0.9085144927536232, 0.8858695652173914, 0.8577898550724637, 0.6983695652173914, 0.3432971014492754, 0.20923913043478262, 0.18568840579710144, 0.1403985507246377, 0.8632246376811594, 0.9393115942028986, 0.9030797101449275, 0.7853260869565217, 0.11322463768115942, 0.1105072463768116, 0.11141304347826086, 0.11141304347826086, 0.11141304347826086, 0.11865942028985507, 0.12681159420289856, 0.125, 0.13134057971014493, 0.1431159420289855, 0.151268115942029, 0.14855072463768115, 0.161231884057971, 0.16576086956521738, 0.8269927536231884, 0.720108695652174, 0.8641304347826086, 0.7472826086956522, 0.18115942028985507, 0.18297101449275363, 0.18659420289855072, 0.18931159420289856, 0.19202898550724637, 0.1956521739130435, 0.21014492753623187, 0.22010869565217392, 0.2509057971014493, 0.48188405797101447, 0.7934782608695652, 0.9483695652173914], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/QueF_N.gap.json b/pfam_gap_rates/QueF_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..63ea40ea8efa64dbe125166cc724997fcfa5d4b6
--- /dev/null
+++ b/pfam_gap_rates/QueF_N.gap.json
@@ -0,0 +1 @@
+{"family": "QueF_N", "n_seqs": 228, "length": 112, "gap_rates": [0.09210526315789473, 0.08771929824561403, 0.03508771929824561, 0.02631578947368421, 0.02631578947368421, 0.021929824561403508, 0.021929824561403508, 0.021929824561403508, 0.021929824561403508, 0.021929824561403508, 0.017543859649122806, 0.017543859649122806, 0.017543859649122806, 0.017543859649122806, 0.017543859649122806, 0.017543859649122806, 0.017543859649122806, 0.021929824561403508, 0.021929824561403508, 0.021929824561403508, 0.021929824561403508, 0.021929824561403508, 0.02631578947368421, 0.021929824561403508, 0.021929824561403508, 0.043859649122807015, 0.9385964912280702, 0.5219298245614035, 0.10964912280701754, 0.04824561403508772, 0.03070175438596491, 0.008771929824561403, 0.008771929824561403, 0.008771929824561403, 0.008771929824561403, 0.008771929824561403, 0.008771929824561403, 0.008771929824561403, 0.008771929824561403, 0.008771929824561403, 0.008771929824561403, 0.008771929824561403, 0.008771929824561403, 0.008771929824561403, 0.008771929824561403, 0.008771929824561403, 0.008771929824561403, 0.008771929824561403, 0.008771929824561403, 0.008771929824561403, 0.008771929824561403, 0.0043859649122807015, 0.0043859649122807015, 0.0043859649122807015, 0.0043859649122807015, 0.0043859649122807015, 0.0043859649122807015, 0.0043859649122807015, 0.0043859649122807015, 0.0043859649122807015, 0.0043859649122807015, 0.0043859649122807015, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0043859649122807015, 0.0, 0.008771929824561403, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0043859649122807015, 0.06578947368421052, 0.07456140350877193, 0.07894736842105263, 0.08333333333333333, 0.08333333333333333, 0.09210526315789473, 0.12719298245614036, 0.3815789473684211], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/RAI1.gap.json b/pfam_gap_rates/RAI1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..60a4cb731624d01497404493f7b40350b23d73a3
--- /dev/null
+++ b/pfam_gap_rates/RAI1.gap.json
@@ -0,0 +1 @@
+{"family": "RAI1", "n_seqs": 265, "length": 79, "gap_rates": [0.3320754716981132, 0.2981132075471698, 0.2943396226415094, 0.28679245283018867, 0.2830188679245283, 0.8716981132075472, 0.27547169811320754, 0.2792452830188679, 0.32452830188679244, 0.5094339622641509, 0.5169811320754717, 0.5056603773584906, 0.43018867924528303, 0.8641509433962264, 0.9056603773584906, 0.909433962264151, 0.9471698113207547, 0.9471698113207547, 0.9207547169811321, 0.9056603773584906, 0.8943396226415095, 0.8188679245283019, 0.12452830188679245, 0.08679245283018867, 0.07169811320754717, 0.06415094339622641, 0.052830188679245285, 0.052830188679245285, 0.04905660377358491, 0.04905660377358491, 0.04905660377358491, 0.04905660377358491, 0.04905660377358491, 0.04905660377358491, 0.04905660377358491, 0.04905660377358491, 0.04905660377358491, 0.27547169811320754, 0.15849056603773584, 0.13584905660377358, 0.12075471698113208, 0.05660377358490566, 0.03773584905660377, 0.026415094339622643, 0.022641509433962263, 0.022641509433962263, 0.022641509433962263, 0.47547169811320755, 0.01509433962264151, 0.011320754716981131, 0.011320754716981131, 0.007547169811320755, 0.0037735849056603774, 0.0037735849056603774, 0.0037735849056603774, 0.0, 0.0037735849056603774, 0.0037735849056603774, 0.0037735849056603774, 0.0037735849056603774, 0.0037735849056603774, 0.007547169811320755, 0.011320754716981131, 0.011320754716981131, 0.01509433962264151, 0.01509433962264151, 0.01509433962264151, 0.01509433962264151, 0.01509433962264151, 0.01509433962264151, 0.01509433962264151, 0.022641509433962263, 0.022641509433962263, 0.033962264150943396, 0.06415094339622641, 0.07169811320754717, 0.09433962264150944, 0.2981132075471698, 0.939622641509434], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/RBD.gap.json b/pfam_gap_rates/RBD.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..6ef19bb55991ea5e107b722f24355455ba8787c4
--- /dev/null
+++ b/pfam_gap_rates/RBD.gap.json
@@ -0,0 +1 @@
+{"family": "RBD", "n_seqs": 250, "length": 77, "gap_rates": [0.544, 0.104, 0.096, 0.088, 0.088, 0.088, 0.932, 0.08, 0.076, 0.072, 0.072, 0.068, 0.076, 0.052, 0.02, 0.02, 0.008, 0.008, 0.008, 0.008, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.004, 0.288, 0.688, 0.752, 0.816, 0.724, 0.548, 0.032, 0.044, 0.18, 0.048, 0.044, 0.048, 0.048, 0.064, 0.064, 0.064, 0.064, 0.064, 0.884, 0.88, 0.072, 0.076, 0.08, 0.084, 0.088, 0.1, 0.12, 0.112, 0.188, 0.44], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/RES.gap.json b/pfam_gap_rates/RES.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..eaf3252aa26c6e02ddde1574acfae9b587e78004
--- /dev/null
+++ b/pfam_gap_rates/RES.gap.json
@@ -0,0 +1 @@
+{"family": "RES", "n_seqs": 640, "length": 222, "gap_rates": [0.865625, 0.5671875, 0.4984375, 0.425, 0.396875, 0.890625, 0.85, 0.3921875, 0.3546875, 0.3046875, 0.375, 0.365625, 0.6859375, 0.9171875, 0.94375, 0.8546875, 0.209375, 0.171875, 0.1390625, 0.1328125, 0.1296875, 0.13125, 0.1234375, 0.8734375, 0.9484375, 0.93125, 0.8328125, 0.46875, 0.30625, 0.1171875, 0.0765625, 0.0640625, 0.0546875, 0.0421875, 0.0375, 0.0359375, 0.0328125, 0.03125, 0.034375, 0.93125, 0.9359375, 0.9453125, 0.9375, 0.934375, 0.93125, 0.0296875, 0.8921875, 0.7953125, 0.0296875, 0.0296875, 0.03125, 0.028125, 0.028125, 0.028125, 0.028125, 0.028125, 0.0296875, 0.0296875, 0.028125, 0.0265625, 0.0265625, 0.028125, 0.0265625, 0.0265625, 0.025, 0.025, 0.0265625, 0.0265625, 0.2890625, 0.171875, 0.10625, 0.09375, 0.0703125, 0.0921875, 0.321875, 0.3390625, 0.3375, 0.34375, 0.321875, 0.3140625, 0.35625, 0.5328125, 0.64375, 0.840625, 0.9265625, 0.8953125, 0.7296875, 0.04375, 0.040625, 0.0328125, 0.0328125, 0.0265625, 0.0234375, 0.025, 0.0265625, 0.0265625, 0.0265625, 0.03125, 0.890625, 0.1890625, 0.4671875, 0.909375, 0.9125, 0.9203125, 0.93125, 0.9359375, 0.9421875, 0.9328125, 0.928125, 0.915625, 0.909375, 0.88125, 0.0453125, 0.04375, 0.05625, 0.0578125, 0.046875, 0.040625, 0.0484375, 0.8375, 0.55, 0.715625, 0.51875, 0.9359375, 0.946875, 0.9234375, 0.1109375, 0.09375, 0.040625, 0.0390625, 0.0328125, 0.0375, 0.0390625, 0.040625, 0.840625, 0.946875, 0.89375, 0.671875, 0.5625, 0.8234375, 0.93125, 0.95, 0.8875, 0.7203125, 0.153125, 0.134375, 0.1015625, 0.1171875, 0.5203125, 0.1359375, 0.7484375, 0.934375, 0.8578125, 0.70625, 0.059375, 0.0453125, 0.0359375, 0.0109375, 0.0078125, 0.0078125, 0.009375, 0.009375, 0.009375, 0.0125, 0.009375, 0.009375, 0.0078125, 0.0078125, 0.825, 0.91875, 0.7109375, 0.0171875, 0.0125, 0.946875, 0.7984375, 0.0234375, 0.009375, 0.009375, 0.009375, 0.0109375, 0.0109375, 0.0109375, 0.0109375, 0.0109375, 0.1625, 0.1015625, 0.6421875, 0.034375, 0.04375, 0.928125, 0.0234375, 0.1609375, 0.9328125, 0.0171875, 0.01875, 0.025, 0.025, 0.0328125, 0.0375, 0.66875, 0.4734375, 0.48125, 0.1328125, 0.15625, 0.184375, 0.2484375, 0.2625, 0.3, 0.3328125, 0.3890625, 0.509375, 0.9484375, 0.9109375, 0.5046875, 0.5296875, 0.559375, 0.590625, 0.6109375, 0.628125, 0.6765625, 0.7265625, 0.8390625], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/RGP.gap.json b/pfam_gap_rates/RGP.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..54ca74360d9375dca0f97d0932bd85128052e2e9
--- /dev/null
+++ b/pfam_gap_rates/RGP.gap.json
@@ -0,0 +1 @@
+{"family": "RGP", "n_seqs": 186, "length": 346, "gap_rates": [0.9193548387096774, 0.5161290322580645, 0.3548387096774194, 0.3172043010752688, 0.3172043010752688, 0.3118279569892473, 0.3118279569892473, 0.3010752688172043, 0.2956989247311828, 0.2956989247311828, 0.2956989247311828, 0.2956989247311828, 0.2956989247311828, 0.2903225806451613, 0.8548387096774194, 0.2903225806451613, 0.2903225806451613, 0.2903225806451613, 0.8494623655913979, 0.2956989247311828, 0.2903225806451613, 0.2903225806451613, 0.27956989247311825, 0.27956989247311825, 0.27956989247311825, 0.27956989247311825, 0.27956989247311825, 0.27956989247311825, 0.27956989247311825, 0.27956989247311825, 0.27956989247311825, 0.27956989247311825, 0.27956989247311825, 0.27956989247311825, 0.27419354838709675, 0.27419354838709675, 0.27419354838709675, 0.27419354838709675, 0.27419354838709675, 0.27419354838709675, 0.27419354838709675, 0.27956989247311825, 0.27956989247311825, 0.27956989247311825, 0.27419354838709675, 0.27956989247311825, 0.27419354838709675, 0.27419354838709675, 0.26881720430107525, 0.26881720430107525, 0.26344086021505375, 0.26344086021505375, 0.26344086021505375, 0.26344086021505375, 0.26344086021505375, 0.26344086021505375, 0.26344086021505375, 0.26344086021505375, 0.25806451612903225, 0.25806451612903225, 0.25806451612903225, 0.26881720430107525, 0.25806451612903225, 0.25806451612903225, 0.25806451612903225, 0.25806451612903225, 0.25806451612903225, 0.25806451612903225, 0.3709677419354839, 0.2903225806451613, 0.23655913978494625, 0.22580645161290322, 0.22580645161290322, 0.22580645161290322, 0.22580645161290322, 0.22580645161290322, 0.22043010752688172, 0.22043010752688172, 0.22043010752688172, 0.22043010752688172, 0.21505376344086022, 0.21505376344086022, 0.21505376344086022, 0.20967741935483872, 0.1774193548387097, 0.1774193548387097, 0.17204301075268819, 0.17204301075268819, 0.17204301075268819, 0.15591397849462366, 0.14516129032258066, 0.14516129032258066, 0.14516129032258066, 0.14516129032258066, 0.14516129032258066, 0.15053763440860216, 0.14516129032258066, 0.14516129032258066, 0.14516129032258066, 0.14516129032258066, 0.12903225806451613, 0.12903225806451613, 0.12903225806451613, 0.13440860215053763, 0.13440860215053763, 0.13978494623655913, 0.13978494623655913, 0.13978494623655913, 0.13440860215053763, 0.13440860215053763, 0.14516129032258066, 0.13978494623655913, 0.13440860215053763, 0.13440860215053763, 0.13440860215053763, 0.12903225806451613, 0.12903225806451613, 0.13440860215053763, 0.13440860215053763, 0.13440860215053763, 0.12903225806451613, 0.12903225806451613, 0.13440860215053763, 0.13440860215053763, 0.13440860215053763, 0.13440860215053763, 0.13978494623655913, 0.13440860215053763, 0.13440860215053763, 0.13440860215053763, 0.13978494623655913, 0.13978494623655913, 0.14516129032258066, 0.13978494623655913, 0.15053763440860216, 0.16129032258064516, 0.14516129032258066, 0.14516129032258066, 0.13440860215053763, 0.12903225806451613, 0.12903225806451613, 0.12903225806451613, 0.12903225806451613, 0.12903225806451613, 0.12903225806451613, 0.12903225806451613, 0.12903225806451613, 0.12903225806451613, 0.12365591397849462, 0.12903225806451613, 0.12365591397849462, 0.12365591397849462, 0.12365591397849462, 0.11827956989247312, 0.11827956989247312, 0.11827956989247312, 0.11827956989247312, 0.11827956989247312, 0.11827956989247312, 0.11827956989247312, 0.12365591397849462, 0.12365591397849462, 0.12365591397849462, 0.12365591397849462, 0.12365591397849462, 0.12903225806451613, 0.12903225806451613, 0.13978494623655913, 0.13978494623655913, 0.13978494623655913, 0.12903225806451613, 0.12903225806451613, 0.12903225806451613, 0.12903225806451613, 0.12903225806451613, 0.13440860215053763, 0.13440860215053763, 0.9408602150537635, 0.9408602150537635, 0.9408602150537635, 0.13440860215053763, 0.13440860215053763, 0.12903225806451613, 0.12903225806451613, 0.12903225806451613, 0.11827956989247312, 0.11290322580645161, 0.11290322580645161, 0.11827956989247312, 0.11827956989247312, 0.11827956989247312, 0.11827956989247312, 0.10752688172043011, 0.11827956989247312, 0.10752688172043011, 0.10752688172043011, 0.10752688172043011, 0.10752688172043011, 0.10752688172043011, 0.10752688172043011, 0.10752688172043011, 0.10752688172043011, 0.11290322580645161, 0.11290322580645161, 0.11290322580645161, 0.10752688172043011, 0.10752688172043011, 0.10752688172043011, 0.10752688172043011, 0.10752688172043011, 0.10752688172043011, 0.10752688172043011, 0.10752688172043011, 0.10752688172043011, 0.10752688172043011, 0.11827956989247312, 0.11827956989247312, 0.10752688172043011, 0.10215053763440861, 0.10215053763440861, 0.10215053763440861, 0.10215053763440861, 0.12365591397849462, 0.11827956989247312, 0.11827956989247312, 0.14516129032258066, 0.13978494623655913, 0.13440860215053763, 0.13978494623655913, 0.14516129032258066, 0.14516129032258066, 0.13978494623655913, 0.13440860215053763, 0.12903225806451613, 0.8172043010752689, 0.8118279569892473, 0.8010752688172043, 0.10752688172043011, 0.10215053763440861, 0.10215053763440861, 0.10215053763440861, 0.10215053763440861, 0.10215053763440861, 0.10215053763440861, 0.10215053763440861, 0.10215053763440861, 0.10215053763440861, 0.10752688172043011, 0.10752688172043011, 0.10752688172043011, 0.10752688172043011, 0.10752688172043011, 0.10752688172043011, 0.10752688172043011, 0.10752688172043011, 0.10752688172043011, 0.10752688172043011, 0.10752688172043011, 0.10752688172043011, 0.10752688172043011, 0.10752688172043011, 0.10752688172043011, 0.10752688172043011, 0.10752688172043011, 0.10215053763440861, 0.0913978494623656, 0.9354838709677419, 0.8817204301075269, 0.0913978494623656, 0.0913978494623656, 0.0913978494623656, 0.0967741935483871, 0.10752688172043011, 0.10752688172043011, 0.10752688172043011, 0.10752688172043011, 0.10752688172043011, 0.16666666666666666, 0.10752688172043011, 0.0967741935483871, 0.0967741935483871, 0.0967741935483871, 0.0967741935483871, 0.0967741935483871, 0.0967741935483871, 0.0967741935483871, 0.10215053763440861, 0.0967741935483871, 0.10215053763440861, 0.10752688172043011, 0.10752688172043011, 0.10752688172043011, 0.10215053763440861, 0.10752688172043011, 0.12365591397849462, 0.12365591397849462, 0.13440860215053763, 0.14516129032258066, 0.16129032258064516, 0.15591397849462366, 0.15591397849462366, 0.16666666666666666, 0.16666666666666666, 0.16666666666666666, 0.16129032258064516, 0.16129032258064516, 0.17204301075268819, 0.15591397849462366, 0.15591397849462366, 0.15591397849462366, 0.15591397849462366, 0.15591397849462366, 0.15591397849462366, 0.15591397849462366, 0.15591397849462366, 0.15053763440860216, 0.15053763440860216, 0.15053763440860216, 0.15053763440860216, 0.15053763440860216, 0.15053763440860216, 0.15591397849462366, 0.15591397849462366, 0.16129032258064516, 0.17204301075268819, 0.17204301075268819, 0.1774193548387097, 0.1774193548387097, 0.1774193548387097, 0.1881720430107527, 0.1881720430107527, 0.1774193548387097, 0.1774193548387097, 0.1774193548387097, 0.1774193548387097, 0.1774193548387097, 0.1827956989247312, 0.1827956989247312, 0.1827956989247312, 0.1881720430107527, 0.1935483870967742, 0.20967741935483872, 0.22043010752688172, 0.22580645161290322, 0.24731182795698925, 0.2849462365591398], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/RIH_assoc.gap.json b/pfam_gap_rates/RIH_assoc.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..37b26a53f20e7732d200cdf109408ef41a02e878
--- /dev/null
+++ b/pfam_gap_rates/RIH_assoc.gap.json
@@ -0,0 +1 @@
+{"family": "RIH_assoc", "n_seqs": 425, "length": 125, "gap_rates": [0.8682352941176471, 0.6305882352941177, 0.3976470588235294, 0.26588235294117646, 0.1976470588235294, 0.13411764705882354, 0.11294117647058824, 0.0988235294117647, 0.06588235294117648, 0.0611764705882353, 0.05647058823529412, 0.05647058823529412, 0.05647058823529412, 0.05647058823529412, 0.05411764705882353, 0.05411764705882353, 0.047058823529411764, 0.047058823529411764, 0.047058823529411764, 0.04941176470588235, 0.04470588235294118, 0.042352941176470586, 0.03294117647058824, 0.03058823529411765, 0.03294117647058824, 0.03058823529411765, 0.03058823529411765, 0.03294117647058824, 0.03294117647058824, 0.03294117647058824, 0.05647058823529412, 0.2376470588235294, 0.09411764705882353, 0.04470588235294118, 0.04941176470588235, 0.9035294117647059, 0.92, 0.9388235294117647, 0.9035294117647059, 0.9011764705882352, 0.06352941176470588, 0.04941176470588235, 0.042352941176470586, 0.03764705882352941, 0.02823529411764706, 0.02823529411764706, 0.03058823529411765, 0.02588235294117647, 0.02588235294117647, 0.02588235294117647, 0.02823529411764706, 0.02823529411764706, 0.018823529411764704, 0.018823529411764704, 0.018823529411764704, 0.021176470588235293, 0.02588235294117647, 0.05411764705882353, 0.05411764705882353, 0.31529411764705884, 0.38588235294117645, 0.3952941176470588, 0.4047058823529412, 0.4188235294117647, 0.7247058823529412, 0.7270588235294118, 0.7294117647058823, 0.731764705882353, 0.731764705882353, 0.731764705882353, 0.731764705882353, 0.7270588235294118, 0.7270588235294118, 0.4611764705882353, 0.40941176470588236, 0.4, 0.38823529411764707, 0.36941176470588233, 0.2635294117647059, 0.04470588235294118, 0.03529411764705882, 0.023529411764705882, 0.01647058823529412, 0.01647058823529412, 0.01411764705882353, 0.018823529411764704, 0.018823529411764704, 0.018823529411764704, 0.018823529411764704, 0.01647058823529412, 0.023529411764705882, 0.023529411764705882, 0.023529411764705882, 0.023529411764705882, 0.023529411764705882, 0.023529411764705882, 0.023529411764705882, 0.02588235294117647, 0.02588235294117647, 0.02823529411764706, 0.03058823529411765, 0.05647058823529412, 0.1223529411764706, 0.042352941176470586, 0.042352941176470586, 0.047058823529411764, 0.047058823529411764, 0.047058823529411764, 0.04941176470588235, 0.05647058823529412, 0.7411764705882353, 0.7011764705882353, 0.05647058823529412, 0.058823529411764705, 0.06588235294117648, 0.07294117647058823, 0.07764705882352942, 0.08705882352941176, 0.08941176470588236, 0.09411764705882353, 0.10588235294117647, 0.12705882352941175, 0.15294117647058825, 0.20470588235294118, 0.6564705882352941], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/RIO1.gap.json b/pfam_gap_rates/RIO1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..96f7a4dfbeffc5327193073bd619b4d60bba6713
--- /dev/null
+++ b/pfam_gap_rates/RIO1.gap.json
@@ -0,0 +1 @@
+{"family": "RIO1", "n_seqs": 1366, "length": 203, "gap_rates": [0.5746705710102489, 0.41874084919472915, 0.39824304538799415, 0.38433382137628114, 0.37774524158125916, 0.3814055636896047, 0.369692532942899, 0.3814055636896047, 0.363103953147877, 0.349194729136164, 0.3008784773060029, 0.8411420204978038, 0.8601756954612005, 0.8975109809663251, 0.8740849194729137, 0.849194729136164, 0.8338213762811127, 0.3169838945827233, 0.28111273792093705, 0.2745241581259151, 0.2745241581259151, 0.27232796486090777, 0.26939970717423134, 0.2679355783308931, 0.26720351390922403, 0.2664714494875549, 0.2664714494875549, 0.26061493411420206, 0.2547584187408492, 0.25329428989751096, 0.24743777452415813, 0.246705710102489, 0.24377745241581258, 0.9004392386530015, 0.22840409956076135, 0.22547584187408493, 0.2247437774524158, 0.2247437774524158, 0.2247437774524158, 0.2240117130307467, 0.2225475841874085, 0.22035139092240116, 0.21815519765739386, 0.21669106881405564, 0.493411420204978, 0.4882869692532943, 0.5197657393850659, 0.5007320644216691, 0.31112737920937045, 0.2891654465592972, 0.23133235724743778, 0.22547584187408493, 0.2042459736456808, 0.19765739385065886, 0.1903367496339678, 0.18594436310395315, 0.17496339677891654, 0.17496339677891654, 0.1720351390922401, 0.16544655929721816, 0.15592972181551976, 0.1493411420204978, 0.14714494875549047, 0.14128843338213762, 0.14128843338213762, 0.1398243045387994, 0.14055636896046853, 0.1398243045387994, 0.1383601756954612, 0.13616398243045388, 0.13616398243045388, 0.13689604685212298, 0.13543191800878476, 0.13616398243045388, 0.13616398243045388, 0.17276720351390923, 0.14421669106881405, 0.1376281112737921, 0.13250366032210834, 0.13323572474377746, 0.13323572474377746, 0.13323572474377746, 0.13177159590043924, 0.13177159590043924, 0.1281112737920937, 0.12225475841874085, 0.12225475841874085, 0.12079062957540264, 0.11786237188872621, 0.116398243045388, 0.11493411420204978, 0.11127379209370425, 0.11054172767203514, 0.11127379209370425, 0.11127379209370425, 0.11127379209370425, 0.7906295754026355, 0.49487554904831627, 0.46193265007320644, 0.12371888726207907, 0.12664714494875548, 0.12005856515373353, 0.12079062957540264, 0.12079062957540264, 0.12152269399707175, 0.11786237188872621, 0.116398243045388, 0.11273792093704246, 0.11200585651537336, 0.11786237188872621, 0.568081991215227, 0.49267935578330896, 0.9011713030746705, 0.9399707174231332, 0.9260614934114202, 0.8272327964860908, 0.41947291361639827, 0.3931185944363104, 0.15373352855051245, 0.1273792093704246, 0.11786237188872621, 0.11346998535871157, 0.10834553440702782, 0.10468521229868229, 0.10468521229868229, 0.10395314787701318, 0.10468521229868229, 0.1054172767203514, 0.10322108345534407, 0.2957540263543192, 0.1376281112737921, 0.11493411420204978, 0.116398243045388, 0.1061493411420205, 0.1171303074670571, 0.3206442166910688, 0.09809663250366032, 0.09736456808199122, 0.09809663250366032, 0.09809663250366032, 0.09809663250366032, 0.09736456808199122, 0.09809663250366032, 0.09882869692532943, 0.09809663250366032, 0.09882869692532943, 0.10029282576866765, 0.10175695461200586, 0.10322108345534407, 0.1061493411420205, 0.10175695461200586, 0.09882869692532943, 0.09956076134699854, 0.10175695461200586, 0.11200585651537336, 0.945095168374817, 0.739385065885798, 0.11493411420204978, 0.10102489019033675, 0.10468521229868229, 0.10468521229868229, 0.1054172767203514, 0.1054172767203514, 0.10688140556368961, 0.11932650073206442, 0.1603221083455344, 0.16617862371888725, 0.1800878477306003, 0.18521229868228403, 0.1910688140556369, 0.19765739385065886, 0.8792093704245973, 0.20497803806734993, 0.20717423133235724, 0.21010248901903367, 0.21376281112737922, 0.21595900439238652, 0.21888726207906295, 0.2232796486090776, 0.22620790629575402, 0.22767203513909223, 0.22693997071742314, 0.22693997071742314, 0.22693997071742314, 0.22693997071742314, 0.22693997071742314, 0.22693997071742314, 0.22693997071742314, 0.22986822840409957, 0.23133235724743778, 0.232796486090776, 0.232796486090776, 0.23938506588579794, 0.24597364568081992, 0.25768667642752563, 0.2759882869692533, 0.3323572474377745, 0.6244509516837482, 0.6625183016105417, 0.7210834553440703, 0.7898975109809663, 0.8462664714494875, 0.9194729136163983], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/RMI1_C.gap.json b/pfam_gap_rates/RMI1_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..fc4507afa0fec9054c43aa6a53d81225e95273dd
--- /dev/null
+++ b/pfam_gap_rates/RMI1_C.gap.json
@@ -0,0 +1 @@
+{"family": "RMI1_C", "n_seqs": 109, "length": 150, "gap_rates": [0.5045871559633027, 0.3944954128440367, 0.3669724770642202, 0.3577981651376147, 0.3486238532110092, 0.3486238532110092, 0.3394495412844037, 0.3394495412844037, 0.3394495412844037, 0.3302752293577982, 0.3302752293577982, 0.5504587155963303, 0.5779816513761468, 0.5596330275229358, 0.7339449541284404, 0.3486238532110092, 0.28440366972477066, 0.24770642201834864, 0.24770642201834864, 0.22018348623853212, 0.21100917431192662, 0.27522935779816515, 0.2018348623853211, 0.24770642201834864, 0.08256880733944955, 0.08256880733944955, 0.08256880733944955, 0.08256880733944955, 0.05504587155963303, 0.045871559633027525, 0.05504587155963303, 0.045871559633027525, 0.045871559633027525, 0.07339449541284404, 0.05504587155963303, 0.03669724770642202, 0.03669724770642202, 0.03669724770642202, 0.03669724770642202, 0.07339449541284404, 0.03669724770642202, 0.01834862385321101, 0.027522935779816515, 0.01834862385321101, 0.8623853211009175, 0.01834862385321101, 0.009174311926605505, 0.009174311926605505, 0.009174311926605505, 0.009174311926605505, 0.009174311926605505, 0.009174311926605505, 0.009174311926605505, 0.009174311926605505, 0.009174311926605505, 0.009174311926605505, 0.926605504587156, 0.009174311926605505, 0.009174311926605505, 0.009174311926605505, 0.009174311926605505, 0.01834862385321101, 0.01834862385321101, 0.009174311926605505, 0.009174311926605505, 0.009174311926605505, 0.009174311926605505, 0.009174311926605505, 0.01834862385321101, 0.01834862385321101, 0.01834862385321101, 0.01834862385321101, 0.01834862385321101, 0.01834862385321101, 0.01834862385321101, 0.01834862385321101, 0.01834862385321101, 0.01834862385321101, 0.1743119266055046, 0.27522935779816515, 0.28440366972477066, 0.08256880733944955, 0.05504587155963303, 0.03669724770642202, 0.03669724770642202, 0.03669724770642202, 0.11009174311926606, 0.4036697247706422, 0.21100917431192662, 0.1743119266055046, 0.14678899082568808, 0.09174311926605505, 0.06422018348623854, 0.07339449541284404, 0.07339449541284404, 0.08256880733944955, 0.11926605504587157, 0.09174311926605505, 0.08256880733944955, 0.06422018348623854, 0.06422018348623854, 0.06422018348623854, 0.06422018348623854, 0.06422018348623854, 0.06422018348623854, 0.06422018348623854, 0.06422018348623854, 0.06422018348623854, 0.06422018348623854, 0.06422018348623854, 0.06422018348623854, 0.08256880733944955, 0.08256880733944955, 0.08256880733944955, 0.08256880733944955, 0.08256880733944955, 0.08256880733944955, 0.08256880733944955, 0.10091743119266056, 0.10091743119266056, 0.10091743119266056, 0.9174311926605505, 0.944954128440367, 0.9357798165137615, 0.8532110091743119, 0.27522935779816515, 0.1926605504587156, 0.1834862385321101, 0.1743119266055046, 0.1743119266055046, 0.1743119266055046, 0.1743119266055046, 0.1834862385321101, 0.2018348623853211, 0.7798165137614679, 0.25688073394495414, 0.28440366972477066, 0.30275229357798167, 0.3394495412844037, 0.3486238532110092, 0.3853211009174312, 0.4036697247706422, 0.41284403669724773, 0.42201834862385323, 0.42201834862385323, 0.42201834862385323, 0.43119266055045874, 0.44954128440366975, 0.44036697247706424, 0.5045871559633027], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/RNA_polI_A34.gap.json b/pfam_gap_rates/RNA_polI_A34.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..9042d91258c3b08104a53db06dc1983851d7be93
--- /dev/null
+++ b/pfam_gap_rates/RNA_polI_A34.gap.json
@@ -0,0 +1 @@
+{"family": "RNA_polI_A34", "n_seqs": 164, "length": 313, "gap_rates": [0.8414634146341463, 0.27439024390243905, 0.10365853658536585, 0.09146341463414634, 0.07317073170731707, 0.06097560975609756, 0.06097560975609756, 0.06097560975609756, 0.06097560975609756, 0.06097560975609756, 0.06097560975609756, 0.06097560975609756, 0.06097560975609756, 0.06097560975609756, 0.054878048780487805, 0.054878048780487805, 0.054878048780487805, 0.054878048780487805, 0.054878048780487805, 0.054878048780487805, 0.06097560975609756, 0.3902439024390244, 0.3719512195121951, 0.07317073170731707, 0.06097560975609756, 0.9207317073170732, 0.9451219512195121, 0.9207317073170732, 0.06707317073170732, 0.06707317073170732, 0.06097560975609756, 0.06097560975609756, 0.8841463414634146, 0.9207317073170732, 0.8719512195121951, 0.13414634146341464, 0.12804878048780488, 0.12195121951219512, 0.10975609756097561, 0.06707317073170732, 0.06707317073170732, 0.07317073170731707, 0.9329268292682927, 0.12195121951219512, 0.9329268292682927, 0.9451219512195121, 0.9329268292682927, 0.9207317073170732, 0.054878048780487805, 0.054878048780487805, 0.04878048780487805, 0.04878048780487805, 0.04878048780487805, 0.04878048780487805, 0.04878048780487805, 0.04878048780487805, 0.04878048780487805, 0.04878048780487805, 0.042682926829268296, 0.042682926829268296, 0.07317073170731707, 0.08536585365853659, 0.6463414634146342, 0.7621951219512195, 0.8170731707317073, 0.8658536585365854, 0.926829268292683, 0.8902439024390244, 0.8597560975609756, 0.7865853658536586, 0.7195121951219512, 0.5975609756097561, 0.20121951219512196, 0.2865853658536585, 0.06707317073170732, 0.06097560975609756, 0.06097560975609756, 0.06097560975609756, 0.06097560975609756, 0.04878048780487805, 0.9085365853658537, 0.9207317073170732, 0.926829268292683, 0.9146341463414634, 0.9024390243902439, 0.04878048780487805, 0.04878048780487805, 0.054878048780487805, 0.04878048780487805, 0.04878048780487805, 0.04878048780487805, 0.15853658536585366, 0.1524390243902439, 0.9451219512195121, 0.9451219512195121, 0.9146341463414634, 0.12195121951219512, 0.09146341463414634, 0.08536585365853659, 0.07926829268292683, 0.06707317073170732, 0.14634146341463414, 0.7195121951219512, 0.07317073170731707, 0.06707317073170732, 0.06707317073170732, 0.06097560975609756, 0.06097560975609756, 0.06707317073170732, 0.06097560975609756, 0.06097560975609756, 0.06097560975609756, 0.054878048780487805, 0.07317073170731707, 0.07317073170731707, 0.054878048780487805, 0.054878048780487805, 0.054878048780487805, 0.054878048780487805, 0.06097560975609756, 0.06097560975609756, 0.06707317073170732, 0.7987804878048781, 0.8414634146341463, 0.8780487804878049, 0.9146341463414634, 0.9146341463414634, 0.8963414634146342, 0.8597560975609756, 0.8292682926829268, 0.7865853658536586, 0.07926829268292683, 0.17073170731707318, 0.18292682926829268, 0.20121951219512196, 0.5304878048780488, 0.45121951219512196, 0.6036585365853658, 0.774390243902439, 0.8780487804878049, 0.9329268292682927, 0.9024390243902439, 0.7987804878048781, 0.676829268292683, 0.5304878048780488, 0.10365853658536585, 0.07317073170731707, 0.054878048780487805, 0.07317073170731707, 0.07317073170731707, 0.07317073170731707, 0.07926829268292683, 0.07317073170731707, 0.07317073170731707, 0.774390243902439, 0.07317073170731707, 0.07317073170731707, 0.07317073170731707, 0.8414634146341463, 0.07317073170731707, 0.07317073170731707, 0.07317073170731707, 0.07317073170731707, 0.07317073170731707, 0.07317073170731707, 0.07317073170731707, 0.07317073170731707, 0.07317073170731707, 0.07317073170731707, 0.07317073170731707, 0.14634146341463414, 0.7865853658536586, 0.8963414634146342, 0.9390243902439024, 0.9329268292682927, 0.8292682926829268, 0.6829268292682927, 0.18902439024390244, 0.18292682926829268, 0.18292682926829268, 0.17682926829268292, 0.23170731707317074, 0.2865853658536585, 0.2073170731707317, 0.18292682926829268, 0.17682926829268292, 0.17073170731707318, 0.18292682926829268, 0.17682926829268292, 0.9451219512195121, 0.9207317073170732, 0.3475609756097561, 0.25, 0.24390243902439024, 0.22560975609756098, 0.22560975609756098, 0.23170731707317074, 0.21951219512195122, 0.23170731707317074, 0.23170731707317074, 0.1951219512195122, 0.725609756097561, 0.8048780487804879, 0.8475609756097561, 0.8658536585365854, 0.926829268292683, 0.9451219512195121, 0.9329268292682927, 0.9146341463414634, 0.8658536585365854, 0.8414634146341463, 0.7621951219512195, 0.7012195121951219, 0.15853658536585366, 0.2073170731707317, 0.1951219512195122, 0.18292682926829268, 0.17682926829268292, 0.17073170731707318, 0.15853658536585366, 0.14634146341463414, 0.14634146341463414, 0.1402439024390244, 0.1402439024390244, 0.14634146341463414, 0.14634146341463414, 0.1524390243902439, 0.17682926829268292, 0.1951219512195122, 0.1951219512195122, 0.2073170731707317, 0.17073170731707318, 0.6097560975609756, 0.6951219512195121, 0.7560975609756098, 0.8170731707317073, 0.823170731707317, 0.8597560975609756, 0.9146341463414634, 0.9329268292682927, 0.9390243902439024, 0.926829268292683, 0.8902439024390244, 0.8414634146341463, 0.8170731707317073, 0.7804878048780488, 0.7195121951219512, 0.6463414634146342, 0.5609756097560976, 0.18292682926829268, 0.21951219512195122, 0.21341463414634146, 0.2073170731707317, 0.20121951219512196, 0.20121951219512196, 0.20121951219512196, 0.2073170731707317, 0.20121951219512196, 0.20121951219512196, 0.21951219512195122, 0.23780487804878048, 0.2621951219512195, 0.27439024390243905, 0.31097560975609756, 0.32926829268292684, 0.3597560975609756, 0.38414634146341464, 0.4451219512195122, 0.5670731707317073, 0.5670731707317073, 0.6890243902439024, 0.7378048780487805, 0.774390243902439, 0.8109756097560976, 0.8353658536585366, 0.8414634146341463, 0.8841463414634146, 0.8963414634146342, 0.9024390243902439, 0.9085365853658537, 0.9146341463414634, 0.9390243902439024, 0.9451219512195121, 0.9207317073170732, 0.9085365853658537, 0.9085365853658537, 0.8963414634146342, 0.8841463414634146, 0.8658536585365854, 0.8414634146341463, 0.823170731707317, 0.7865853658536586, 0.7621951219512195, 0.7012195121951219, 0.6829268292682927, 0.5, 0.5792682926829268, 0.5365853658536586, 0.5426829268292683, 0.524390243902439, 0.5182926829268293, 0.5792682926829268, 0.5853658536585366, 0.5914634146341463, 0.573170731707317, 0.5609756097560976, 0.5548780487804879, 0.5487804878048781, 0.5487804878048781, 0.5792682926829268, 0.6158536585365854, 0.7012195121951219, 0.8597560975609756], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/RNA_pol_I_A49.gap.json b/pfam_gap_rates/RNA_pol_I_A49.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..83162e209ef1ed921d14a4b1c00592d987b72243
--- /dev/null
+++ b/pfam_gap_rates/RNA_pol_I_A49.gap.json
@@ -0,0 +1 @@
+{"family": "RNA_pol_I_A49", "n_seqs": 313, "length": 468, "gap_rates": [0.8306709265175719, 0.6869009584664537, 0.610223642172524, 0.5623003194888179, 0.536741214057508, 0.5175718849840255, 0.476038338658147, 0.4536741214057508, 0.43769968051118213, 0.43130990415335463, 0.8083067092651757, 0.8466453674121406, 0.8785942492012779, 0.9488817891373802, 0.9201277955271565, 0.8626198083067093, 0.8210862619808307, 0.7955271565495208, 0.7028753993610224, 0.6741214057507987, 0.6421725239616614, 0.5814696485623003, 0.5015974440894568, 0.476038338658147, 0.3610223642172524, 0.3258785942492013, 0.30670926517571884, 0.3003194888178914, 0.2939297124600639, 0.29073482428115016, 0.28753993610223644, 0.28115015974440893, 0.2715654952076677, 0.26198083067092653, 0.25878594249201275, 0.25878594249201275, 0.25559105431309903, 0.731629392971246, 0.24920127795527156, 0.24920127795527156, 0.24600638977635783, 0.23961661341853036, 0.23322683706070288, 0.23322683706070288, 0.22364217252396165, 0.22044728434504793, 0.21405750798722045, 0.2108626198083067, 0.20766773162939298, 0.21405750798722045, 0.22044728434504793, 0.2268370607028754, 0.23961661341853036, 0.3354632587859425, 0.38338658146964855, 0.6006389776357828, 0.48881789137380194, 0.3993610223642173, 0.939297124600639, 0.8466453674121406, 0.16293929712460065, 0.1597444089456869, 0.1597444089456869, 0.16293929712460065, 0.16293929712460065, 0.1597444089456869, 0.1597444089456869, 0.1597444089456869, 0.16613418530351437, 0.16293929712460065, 0.15654952076677317, 0.15654952076677317, 0.15654952076677317, 0.15654952076677317, 0.15654952076677317, 0.15654952076677317, 0.15654952076677317, 0.15654952076677317, 0.9169329073482428, 0.9201277955271565, 0.8306709265175719, 0.1597444089456869, 0.16613418530351437, 0.16293929712460065, 0.9456869009584664, 0.1597444089456869, 0.1597444089456869, 0.1597444089456869, 0.1597444089456869, 0.16293929712460065, 0.16293929712460065, 0.15335463258785942, 0.15335463258785942, 0.1853035143769968, 0.1853035143769968, 0.1853035143769968, 0.1853035143769968, 0.19169329073482427, 0.18849840255591055, 0.18849840255591055, 0.18849840255591055, 0.19169329073482427, 0.16932907348242812, 0.7476038338658147, 0.8210862619808307, 0.9009584664536742, 0.9265175718849841, 0.9361022364217252, 0.9233226837060703, 0.8690095846645367, 0.7731629392971247, 0.6485623003194888, 0.4504792332268371, 0.3514376996805112, 0.24920127795527156, 0.2108626198083067, 0.2012779552715655, 0.18849840255591055, 0.1597444089456869, 0.15335463258785942, 0.13738019169329074, 0.939297124600639, 0.9201277955271565, 0.13099041533546327, 0.12779552715654952, 0.12140575079872204, 0.12140575079872204, 0.12140575079872204, 0.12140575079872204, 0.12140575079872204, 0.1182108626198083, 0.1182108626198083, 0.1182108626198083, 0.1182108626198083, 0.1182108626198083, 0.1182108626198083, 0.12140575079872204, 0.12460063897763578, 0.12779552715654952, 0.13099041533546327, 0.13099041533546327, 0.13099041533546327, 0.13099041533546327, 0.13099041533546327, 0.13099041533546327, 0.13738019169329074, 0.134185303514377, 0.13099041533546327, 0.14696485623003194, 0.14376996805111822, 0.8722044728434505, 0.9137380191693291, 0.9297124600638977, 0.9488817891373802, 0.9169329073482428, 0.8945686900958466, 0.8594249201277955, 0.19169329073482427, 0.17252396166134185, 0.8402555910543131, 0.8626198083067093, 0.9169329073482428, 0.9361022364217252, 0.9297124600638977, 0.8977635782747604, 0.8498402555910544, 0.8338658146964856, 0.1597444089456869, 0.15654952076677317, 0.14057507987220447, 0.13738019169329074, 0.134185303514377, 0.134185303514377, 0.13099041533546327, 0.12779552715654952, 0.13099041533546327, 0.13099041533546327, 0.12460063897763578, 0.12460063897763578, 0.12460063897763578, 0.12460063897763578, 0.12460063897763578, 0.12779552715654952, 0.13099041533546327, 0.2012779552715655, 0.21405750798722045, 0.9456869009584664, 0.8178913738019169, 0.23961661341853036, 0.23003194888178913, 0.21725239616613418, 0.21725239616613418, 0.19808306709265175, 0.8977635782747604, 0.9424920127795527, 0.9488817891373802, 0.9456869009584664, 0.9169329073482428, 0.8466453674121406, 0.17252396166134185, 0.16932907348242812, 0.1597444089456869, 0.14376996805111822, 0.1501597444089457, 0.16613418530351437, 0.20766773162939298, 0.939297124600639, 0.853035143769968, 0.268370607028754, 0.24281150159744408, 0.13738019169329074, 0.134185303514377, 0.12779552715654952, 0.13099041533546327, 0.134185303514377, 0.13738019169329074, 0.16293929712460065, 0.134185303514377, 0.13099041533546327, 0.12140575079872204, 0.12140575079872204, 0.12140575079872204, 0.12140575079872204, 0.12140575079872204, 0.12140575079872204, 0.12140575079872204, 0.12460063897763578, 0.12460063897763578, 0.12779552715654952, 0.12779552715654952, 0.12460063897763578, 0.12779552715654952, 0.12779552715654952, 0.12779552715654952, 0.12779552715654952, 0.12779552715654952, 0.12779552715654952, 0.12779552715654952, 0.12779552715654952, 0.16293929712460065, 0.16293929712460065, 0.16613418530351437, 0.17252396166134185, 0.1757188498402556, 0.14057507987220447, 0.13738019169329074, 0.13738019169329074, 0.13738019169329074, 0.14057507987220447, 0.14696485623003194, 0.8466453674121406, 0.2012779552715655, 0.19488817891373802, 0.17891373801916932, 0.16613418530351437, 0.15654952076677317, 0.15335463258785942, 0.49201277955271566, 0.48242811501597443, 0.46325878594249204, 0.43450479233226835, 0.5143769968051118, 0.865814696485623, 0.43450479233226835, 0.20447284345047922, 0.19169329073482427, 0.16932907348242812, 0.15654952076677317, 0.13738019169329074, 0.14057507987220447, 0.14057507987220447, 0.14376996805111822, 0.14376996805111822, 0.14376996805111822, 0.14696485623003194, 0.14376996805111822, 0.1501597444089457, 0.14696485623003194, 0.1501597444089457, 0.1853035143769968, 0.1853035143769968, 0.17252396166134185, 0.8370607028753994, 0.8753993610223643, 0.9041533546325878, 0.9233226837060703, 0.939297124600639, 0.939297124600639, 0.9201277955271565, 0.8817891373801917, 0.8626198083067093, 0.744408945686901, 0.6166134185303515, 0.44089456869009586, 0.33226837060702874, 0.1501597444089457, 0.13738019169329074, 0.13099041533546327, 0.134185303514377, 0.12779552715654952, 0.12779552715654952, 0.13099041533546327, 0.12779552715654952, 0.12779552715654952, 0.12779552715654952, 0.12779552715654952, 0.12779552715654952, 0.12779552715654952, 0.12779552715654952, 0.13099041533546327, 0.13099041533546327, 0.134185303514377, 0.134185303514377, 0.134185303514377, 0.134185303514377, 0.134185303514377, 0.1597444089456869, 0.13738019169329074, 0.17891373801916932, 0.1757188498402556, 0.3610223642172524, 0.38977635782747605, 0.5271565495207667, 0.5143769968051118, 0.7763578274760383, 0.853035143769968, 0.8146964856230032, 0.744408945686901, 0.4472843450479233, 0.4440894568690096, 0.40894568690095845, 0.3769968051118211, 0.36741214057507987, 0.2971246006389776, 0.29073482428115016, 0.2971246006389776, 0.8594249201277955, 0.939297124600639, 0.9233226837060703, 0.7667731629392971, 0.16613418530351437, 0.12460063897763578, 0.12460063897763578, 0.12460063897763578, 0.12460063897763578, 0.12779552715654952, 0.12779552715654952, 0.12460063897763578, 0.12460063897763578, 0.12140575079872204, 0.12140575079872204, 0.12140575079872204, 0.12140575079872204, 0.12140575079872204, 0.12140575079872204, 0.12140575079872204, 0.12140575079872204, 0.12140575079872204, 0.12140575079872204, 0.12140575079872204, 0.3003194888178914, 0.4057507987220447, 0.46006389776357826, 0.4440894568690096, 0.46006389776357826, 0.4792332268370607, 0.5942492012779552, 0.5399361022364217, 0.7795527156549521, 0.8466453674121406, 0.9233226837060703, 0.8146964856230032, 0.7124600638977636, 0.13099041533546327, 0.12460063897763578, 0.12140575079872204, 0.12140575079872204, 0.1182108626198083, 0.1182108626198083, 0.1182108626198083, 0.1182108626198083, 0.12140575079872204, 0.12140575079872204, 0.12140575079872204, 0.12779552715654952, 0.12779552715654952, 0.12779552715654952, 0.12779552715654952, 0.12779552715654952, 0.12779552715654952, 0.12779552715654952, 0.12779552715654952, 0.13099041533546327, 0.13099041533546327, 0.13738019169329074, 0.13738019169329074, 0.13738019169329074, 0.9361022364217252, 0.14057507987220447, 0.13738019169329074, 0.13738019169329074, 0.13738019169329074, 0.134185303514377, 0.134185303514377, 0.13738019169329074, 0.14376996805111822, 0.14057507987220447, 0.13738019169329074, 0.14057507987220447, 0.14376996805111822, 0.14057507987220447, 0.14057507987220447, 0.14057507987220447, 0.14057507987220447, 0.13738019169329074, 0.14057507987220447, 0.14376996805111822, 0.14376996805111822, 0.14376996805111822, 0.14376996805111822, 0.1501597444089457, 0.14696485623003194, 0.1501597444089457, 0.1501597444089457, 0.1501597444089457, 0.1501597444089457, 0.1501597444089457, 0.1501597444089457, 0.15335463258785942, 0.15335463258785942, 0.2715654952076677, 0.28115015974440893, 0.3226837060702875, 0.3961661341853035, 0.45686900958466453, 0.4440894568690096, 0.476038338658147, 0.5047923322683706, 0.5175718849840255, 0.5782747603833865, 0.5718849840255591, 0.6805111821086262, 0.7667731629392971, 0.9169329073482428, 0.9009584664536742, 0.7060702875399361, 0.6549520766773163, 0.3194888178913738, 0.2523961661341853, 0.2364217252396166, 0.23322683706070288, 0.2268370607028754, 0.2268370607028754, 0.2268370607028754, 0.23322683706070288, 0.23322683706070288, 0.23003194888178913, 0.2715654952076677, 0.2779552715654952, 0.28434504792332266, 0.2747603833865815, 0.29073482428115016, 0.3194888178913738, 0.3450479233226837, 0.3993610223642173, 0.48881789137380194, 0.6038338658146964, 0.8753993610223643], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/RNA_pol_Rpb1_2.gap.json b/pfam_gap_rates/RNA_pol_Rpb1_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..4bf6e47ce8c66980feabf933327f8a0183e3fb91
--- /dev/null
+++ b/pfam_gap_rates/RNA_pol_Rpb1_2.gap.json
@@ -0,0 +1 @@
+{"family": "RNA_pol_Rpb1_2", "n_seqs": 5000, "length": 179, "gap_rates": [0.356, 0.349, 0.3476, 0.3476, 0.342, 0.342, 0.342, 0.3416, 0.3418, 0.3418, 0.3418, 0.3418, 0.3418, 0.3416, 0.3416, 0.3416, 0.3416, 0.3416, 0.3414, 0.3406, 0.3402, 0.3402, 0.3404, 0.3406, 0.3406, 0.3408, 0.341, 0.341, 0.3412, 0.3412, 0.341, 0.3408, 0.3408, 0.3408, 0.3408, 0.3408, 0.3418, 0.3434, 0.3476, 0.3572, 0.3658, 0.384, 0.4054, 0.4202, 0.4348, 0.4548, 0.4652, 0.469, 0.511, 0.5292, 0.539, 0.561, 0.6148, 0.6426, 0.6614, 0.7232, 0.7422, 0.7566, 0.7816, 0.7766, 0.7672, 0.7606, 0.7594, 0.7408, 0.7234, 0.7, 0.6812, 0.6548, 0.616, 0.5952, 0.5682, 0.5112, 0.4812, 0.464, 0.4508, 0.44, 0.4386, 0.5446, 0.5488, 0.9182, 0.555, 0.5248, 0.4394, 0.421, 0.4106, 0.4014, 0.4044, 0.5036, 0.4946, 0.4684, 0.9288, 0.929, 0.9394, 0.9422, 0.9468, 0.9482, 0.9442, 0.9408, 0.9382, 0.929, 0.9248, 0.3582, 0.3522, 0.351, 0.3442, 0.339, 0.3372, 0.336, 0.3354, 0.3346, 0.3348, 0.3342, 0.3336, 0.3334, 0.3334, 0.3334, 0.3334, 0.3336, 0.3334, 0.3334, 0.3332, 0.3332, 0.3332, 0.3328, 0.3326, 0.3326, 0.3324, 0.3326, 0.3324, 0.3318, 0.3318, 0.3318, 0.3318, 0.33, 0.33, 0.3302, 0.9304, 0.33, 0.3302, 0.3302, 0.3304, 0.3296, 0.3296, 0.33, 0.3298, 0.3294, 0.3298, 0.33, 0.3304, 0.33, 0.33, 0.3304, 0.3304, 0.3304, 0.3304, 0.3304, 0.3302, 0.33, 0.3302, 0.3302, 0.3304, 0.3306, 0.3308, 0.3316, 0.3322, 0.3322, 0.3326, 0.3328, 0.333, 0.3334, 0.3338, 0.3338, 0.3342, 0.3344, 0.3358, 0.341, 0.3494, 0.4276, 0.881], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/RNA_pol_Rpb2_4.gap.json b/pfam_gap_rates/RNA_pol_Rpb2_4.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..49abe4f7c4b2bc6a3e04cdd2d2fac07b31b67624
--- /dev/null
+++ b/pfam_gap_rates/RNA_pol_Rpb2_4.gap.json
@@ -0,0 +1 @@
+{"family": "RNA_pol_Rpb2_4", "n_seqs": 821, "length": 63, "gap_rates": [0.05481120584652863, 0.030450669914738125, 0.014616321559074299, 0.013398294762484775, 0.013398294762484775, 0.013398294762484775, 0.0097442143727162, 0.0097442143727162, 0.0097442143727162, 0.0097442143727162, 0.0097442143727162, 0.0097442143727162, 0.008526187576126675, 0.012180267965895249, 0.008526187576126675, 0.007308160779537149, 0.007308160779537149, 0.007308160779537149, 0.007308160779537149, 0.007308160779537149, 0.007308160779537149, 0.007308160779537149, 0.007308160779537149, 0.0060901339829476245, 0.0060901339829476245, 0.0060901339829476245, 0.007308160779537149, 0.0048721071863581, 0.0048721071863581, 0.9062119366626066, 0.007308160779537149, 0.007308160779537149, 0.0048721071863581, 0.0060901339829476245, 0.0048721071863581, 0.0048721071863581, 0.0060901339829476245, 0.0060901339829476245, 0.0097442143727162, 0.0097442143727162, 0.010962241169305725, 0.031668696711327646, 0.020706455542021926, 0.010962241169305725, 0.0097442143727162, 0.0097442143727162, 0.0097442143727162, 0.008526187576126675, 0.008526187576126675, 0.008526187576126675, 0.008526187576126675, 0.008526187576126675, 0.008526187576126675, 0.008526187576126675, 0.008526187576126675, 0.0097442143727162, 0.013398294762484775, 0.013398294762484775, 0.013398294762484775, 0.013398294762484775, 0.018270401948842874, 0.06577344701583435, 0.20706455542021923], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/RNA_pol_Rpb2_5.gap.json b/pfam_gap_rates/RNA_pol_Rpb2_5.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e185d4b4cfe92a26cd903d75c19e19926b7346aa
--- /dev/null
+++ b/pfam_gap_rates/RNA_pol_Rpb2_5.gap.json
@@ -0,0 +1 @@
+{"family": "RNA_pol_Rpb2_5", "n_seqs": 811, "length": 75, "gap_rates": [0.059186189889025895, 0.036991368680641186, 0.011097410604192354, 0.007398273736128237, 0.004932182490752158, 0.004932182490752158, 0.004932182490752158, 0.004932182490752158, 0.0036991368680641184, 0.0036991368680641184, 0.0036991368680641184, 0.002466091245376079, 0.002466091245376079, 0.002466091245376079, 0.002466091245376079, 0.002466091245376079, 0.0012330456226880395, 0.002466091245376079, 0.0012330456226880395, 0.0012330456226880395, 0.0012330456226880395, 0.0012330456226880395, 0.0012330456226880395, 0.0012330456226880395, 0.0036991368680641184, 0.0036991368680641184, 0.004932182490752158, 0.004932182490752158, 0.006165228113440197, 0.006165228113440197, 0.009864364981504316, 0.007398273736128237, 0.05425400739827373, 0.9087546239210851, 0.5462392108508015, 0.594327990135635, 0.6140567200986436, 0.6374845869297164, 0.7842170160295932, 0.8027127003699137, 0.8039457459926017, 0.8027127003699137, 0.7916152897657214, 0.8051787916152897, 0.8051787916152897, 0.8064118372379778, 0.812577065351418, 0.8199753390875463, 0.8298397040690506, 0.8902589395807645, 0.9494451294697904, 0.9346485819975339, 0.8483353884093712, 0.8212083847102343, 0.8162762022194822, 0.8076448828606658, 0.8064118372379778, 0.8051787916152897, 0.8039457459926017, 0.7866831072749692, 0.7459926017262639, 0.6806411837237978, 0.6313193588162762, 0.5548705302096177, 0.4956843403205919, 0.5141800246609125, 0.374845869297164, 0.040690505548705305, 0.036991368680641186, 0.03945745992601726, 0.04932182490752158, 0.05425400739827373, 0.06288532675709001, 0.08384710234278668, 0.12453760789149199], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/RNA_pol_Rpb2_6.gap.json b/pfam_gap_rates/RNA_pol_Rpb2_6.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..fcc4503fb5673ff339356558afb4a23c7fde641e
--- /dev/null
+++ b/pfam_gap_rates/RNA_pol_Rpb2_6.gap.json
@@ -0,0 +1 @@
+{"family": "RNA_pol_Rpb2_6", "n_seqs": 3769, "length": 598, "gap_rates": [0.5086229769169541, 0.18731759087291058, 0.13902892013796764, 0.12125232157070841, 0.11674184133722473, 0.11541522950384718, 0.11461926240382064, 0.11063942690368798, 0.11063942690368798, 0.11010878217033696, 0.1087821703369594, 0.10904749270363491, 0.10931281507031043, 0.10825152560360839, 0.10825152560360839, 0.10745555850358185, 0.10719023613690634, 0.10692491377023083, 0.10745555850358185, 0.10745555850358185, 0.22791191297426372, 0.2175643406739188, 0.12682409127089414, 0.1233749005041125, 0.1209869992040329, 0.15202971610506766, 0.30565136641018836, 0.21119660387370656, 0.7182276465906076, 0.7360042451578668, 0.8792783231626426, 0.9209339347306978, 0.9087291058636243, 0.7808437251260282, 0.7248607057574954, 0.7155744229238524, 0.10161846643672061, 0.0939241178031308, 0.09339347306977978, 0.09286282833642875, 0.09365879543645529, 0.09339347306977978, 0.09339347306977978, 0.09312815070310428, 0.09286282833642875, 0.09259750596975325, 0.09233218360307774, 0.09206686123640223, 0.09206686123640223, 0.09233218360307774, 0.6970018572565667, 0.6911647651897055, 0.6882462191562748, 0.0912708941363757, 0.09074024940302468, 0.09047492703634917, 0.09020960466967365, 0.09020960466967365, 0.08994428230299814, 0.08994428230299814, 0.08994428230299814, 0.08994428230299814, 0.08941363756964713, 0.0891483152029716, 0.39426903687980897, 0.09180153886972672, 0.0912708941363757, 0.09100557176970019, 0.08967895993632263, 0.08994428230299814, 0.08994428230299814, 0.38710533297957017, 0.3868400106128947, 0.39373839214645795, 0.38710533297957017, 0.3863093658795436, 0.38604404351286814, 0.3857787211461926, 0.3852480764128416, 0.3831254974794375, 0.0912708941363757, 0.09100557176970019, 0.0891483152029716, 0.08676041390289202, 0.08596444680286548, 0.08516847970283895, 0.08490315733616344, 0.08516847970283895, 0.08357654550278588, 0.08331122313611038, 0.08384186786946139, 0.08357654550278588, 0.08384186786946139, 0.08357654550278588, 0.08039267710267975, 0.08092332183603078, 0.0814539665693818, 0.08092332183603078, 0.08198461130273282, 0.08198461130273282, 0.08224993366940833, 0.0814539665693818, 0.08171928893605732, 0.0814539665693818, 0.08198461130273282, 0.08198461130273282, 0.08198461130273282, 0.08171928893605732, 0.0814539665693818, 0.08118864420270629, 0.08171928893605732, 0.08198461130273282, 0.0814539665693818, 0.08118864420270629, 0.08251525603608384, 0.08357654550278588, 0.08463783496948793, 0.0841071902361369, 0.08357654550278588, 0.08278057840275935, 0.08304590076943487, 0.08278057840275935, 0.08304590076943487, 0.08331122313611038, 0.08331122313611038, 0.10904749270363491, 0.10719023613690634, 0.09339347306977978, 0.0891483152029716, 0.0888829928362961, 0.9453435924648448, 0.09551605200318387, 0.10825152560360839, 0.10108782170336959, 0.09816927566993898, 0.09790395330326347, 0.09710798620323693, 0.09737330856991244, 0.8386840010612895, 0.0939241178031308, 0.0939241178031308, 0.11435394003714514, 0.09710798620323693, 0.10241443353674715, 0.10108782170336959, 0.09869992040329, 0.11329265057044309, 0.11461926240382064, 0.0963120191032104, 0.7763332448925444, 0.8049880604934996, 0.8546033430618201, 0.78959936322632, 0.767842929158928, 0.1013531440700451, 0.09737330856991244, 0.09472008490315734, 0.09312815070310428, 0.09339347306977978, 0.09047492703634917, 0.08967895993632263, 0.0891483152029716, 0.08994428230299814, 0.08861767046962059, 0.08835234810294508, 0.08782170336959405, 0.08702573626956753, 0.08729105863624304, 0.08702573626956753, 0.08676041390289202, 0.0864950915362165, 0.08676041390289202, 0.08729105863624304, 0.08702573626956753, 0.0864950915362165, 0.08702573626956753, 0.08755638100291854, 0.08755638100291854, 0.08808702573626957, 0.08835234810294508, 0.08861767046962059, 0.08782170336959405, 0.08835234810294508, 0.09100557176970019, 0.2844255770761475, 0.35871583974529053, 0.3282037675776068, 0.2536481825417883, 0.24303528787476783, 0.2608118864420271, 0.24383125497479438, 0.23268771557442292, 0.2318917484743964, 0.26797559034226587, 0.2594852746086495, 0.2470151233749005, 0.2366675510745556, 0.2276465906075882, 0.21915627487397188, 0.20695144600689838, 0.19421597240647387, 0.18466436720615548, 0.1756434067391881, 0.15123374900504113, 0.14751923587158397, 0.12655876890421863, 0.14858052533828603, 0.17378615017245955, 0.16211196603873707, 0.11170071637039003, 0.09525072963650835, 0.09472008490315734, 0.09472008490315734, 0.0939241178031308, 0.09286282833642875, 0.09206686123640223, 0.09180153886972672, 0.09100557176970019, 0.09074024940302468, 0.0915362165030512, 0.09525072963650835, 0.0915362165030512, 0.09074024940302468, 0.0912708941363757, 0.09180153886972672, 0.0915362165030512, 0.0912708941363757, 0.0912708941363757, 0.09100557176970019, 0.09206686123640223, 0.3730432475457681, 0.39188113557972937, 0.39081984611302734, 0.7476784292915892, 0.751127620058371, 0.7564340673918811, 0.7577606792252587, 0.7585566463252852, 0.7588219686919607, 0.7590872910586363, 0.7593526134253118, 0.7596179357919872, 0.7596179357919872, 0.7601485805253383, 0.7604139028920138, 0.7606792252586894, 0.7609445476253648, 0.7609445476253648, 0.7609445476253648, 0.7620058370920668, 0.7620058370920668, 0.7622711594587424, 0.7625364818254179, 0.7625364818254179, 0.7625364818254179, 0.7625364818254179, 0.7625364818254179, 0.7625364818254179, 0.7625364818254179, 0.7628018041920934, 0.7630671265587688, 0.7633324489254444, 0.7633324489254444, 0.7635977712921199, 0.7635977712921199, 0.7635977712921199, 0.7635977712921199, 0.764128416025471, 0.764128416025471, 0.764128416025471, 0.7643937383921464, 0.7643937383921464, 0.764659060758822, 0.764659060758822, 0.7649243831254975, 0.7649243831254975, 0.7654550278588484, 0.7654550278588484, 0.7654550278588484, 0.7659856725921995, 0.766250994958875, 0.7665163173255506, 0.7670469620589015, 0.7853542053595118, 0.7858848500928628, 0.7858848500928628, 0.7874767842929159, 0.7885380737596179, 0.790660652693022, 0.9015654019633855, 0.9119129742637304, 0.9326081188644203, 0.9148315202971611, 0.9068718492968957, 0.814539665693818, 0.7898646855929955, 0.7874767842929159, 0.7869461395595648, 0.7858848500928628, 0.7856195277261874, 0.7845582382594852, 0.7665163173255506, 0.766250994958875, 0.766250994958875, 0.7659856725921995, 0.7654550278588484, 0.7654550278588484, 0.7649243831254975, 0.7649243831254975, 0.764659060758822, 0.764659060758822, 0.7643937383921464, 0.7643937383921464, 0.764128416025471, 0.764128416025471, 0.764128416025471, 0.7638630936587955, 0.7635977712921199, 0.7635977712921199, 0.7635977712921199, 0.7635977712921199, 0.7633324489254444, 0.7630671265587688, 0.7630671265587688, 0.7628018041920934, 0.7625364818254179, 0.7625364818254179, 0.7625364818254179, 0.7625364818254179, 0.7625364818254179, 0.7625364818254179, 0.7625364818254179, 0.7620058370920668, 0.7620058370920668, 0.7620058370920668, 0.7609445476253648, 0.7609445476253648, 0.7606792252586894, 0.7606792252586894, 0.7604139028920138, 0.7596179357919872, 0.7596179357919872, 0.7593526134253118, 0.7590872910586363, 0.7590872910586363, 0.7588219686919607, 0.7582913239586098, 0.7577606792252587, 0.7540461660918015, 0.7492703634916423, 0.7436985937914566, 0.3892279119129743, 0.3510214911117007, 0.3358981162111966, 0.3260811886442027, 0.11461926240382064, 0.09816927566993898, 0.09737330856991244, 0.09339347306977978, 0.09551605200318387, 0.09737330856991244, 0.0963120191032104, 0.08994428230299814, 0.08967895993632263, 0.08967895993632263, 0.08941363756964713, 0.08967895993632263, 0.08941363756964713, 0.08808702573626957, 0.08729105863624304, 0.08622976916954099, 0.08569912443618997, 0.08543380206951447, 0.08516847970283895, 0.08569912443618997, 0.08516847970283895, 0.08463783496948793, 0.08490315733616344, 0.08543380206951447, 0.08569912443618997, 0.08490315733616344, 0.08463783496948793, 0.08463783496948793, 0.08543380206951447, 0.08543380206951447, 0.08596444680286548, 0.08622976916954099, 0.08622976916954099, 0.0864950915362165, 0.08755638100291854, 0.08782170336959405, 0.0888829928362961, 0.08835234810294508, 0.08782170336959405, 0.08835234810294508, 0.08782170336959405, 0.08729105863624304, 0.08729105863624304, 0.0864950915362165, 0.08357654550278588, 0.08357654550278588, 0.08357654550278588, 0.08384186786946139, 0.08384186786946139, 0.08384186786946139, 0.0841071902361369, 0.08437251260281242, 0.08463783496948793, 0.08463783496948793, 0.08490315733616344, 0.08437251260281242, 0.08304590076943487, 0.08251525603608384, 0.08251525603608384, 0.08251525603608384, 0.08278057840275935, 0.0841071902361369, 0.08437251260281242, 0.08463783496948793, 0.08437251260281242, 0.08437251260281242, 0.08304590076943487, 0.08251525603608384, 0.08331122313611038, 0.08384186786946139, 0.08304590076943487, 0.08331122313611038, 0.08331122313611038, 0.08304590076943487, 0.08331122313611038, 0.08384186786946139, 0.08384186786946139, 0.08437251260281242, 0.08490315733616344, 0.08516847970283895, 0.08516847970283895, 0.08516847970283895, 0.08437251260281242, 0.7442292385248076, 0.7458211727248607, 0.7471477845582383, 0.7482090740249403, 0.7487397187582914, 0.7495356858583179, 0.7519235871583975, 0.7545768108251526, 0.7561687450252056, 0.7574953568585832, 0.7614751923587159, 0.7832316264261078, 0.8007429026266915, 0.8158662775271955, 0.8190501459273016, 0.8190501459273016, 0.8230299814274343, 0.8230299814274343, 0.8230299814274343, 0.8235606261607854, 0.8235606261607854, 0.8235606261607854, 0.8235606261607854, 0.8240912708941364, 0.8262138498275404, 0.8845847704961528, 0.9211992570973733, 0.9028920137967631, 0.8362960997612099, 0.8248872379941629, 0.8238259485274608, 0.8235606261607854, 0.8235606261607854, 0.8235606261607854, 0.8230299814274343, 0.8230299814274343, 0.8230299814274343, 0.8193154682939772, 0.8190501459273016, 0.8187848235606262, 0.8134783762271159, 0.7957017776598567, 0.7803130803926771, 0.7582913239586098, 0.7572300344919076, 0.7545768108251526, 0.7545768108251526, 0.7498010082249934, 0.7487397187582914, 0.7484743963916158, 0.7474131069249138, 0.7468824621915627, 0.7452905279915096, 0.7434332714247811, 0.08437251260281242, 0.08543380206951447, 0.08569912443618997, 0.08569912443618997, 0.08596444680286548, 0.08516847970283895, 0.08516847970283895, 0.08516847970283895, 0.08516847970283895, 0.08516847970283895, 0.08516847970283895, 0.08755638100291854, 0.08676041390289202, 0.09365879543645529, 0.08569912443618997, 0.9172194215972407, 0.9294242504643141, 0.925709737330857, 0.8699920403289997, 0.08437251260281242, 0.08437251260281242, 0.0841071902361369, 0.0841071902361369, 0.08384186786946139, 0.08384186786946139, 0.08384186786946139, 0.08437251260281242, 0.08463783496948793, 0.08941363756964713, 0.08967895993632263, 0.09233218360307774, 0.11435394003714514, 0.08729105863624304, 0.8198461130273282, 0.8227646590607588, 0.8254178827275139, 0.8293977182276466, 0.8906871849296896, 0.926240382064208, 0.9331387635977713, 0.9477314937649244, 0.9320774741310692, 0.9230565136641019, 0.8869726717962324, 0.8288670734942956, 0.8230299814274343, 0.8201114353940037, 0.8198461130273282, 0.08543380206951447, 0.08490315733616344, 0.08490315733616344, 0.08437251260281242, 0.08437251260281242, 0.08278057840275935, 0.08278057840275935, 0.08304590076943487, 0.08331122313611038, 0.08331122313611038, 0.08331122313611038, 0.08357654550278588, 0.08304590076943487, 0.08357654550278588, 0.08384186786946139, 0.08384186786946139, 0.08357654550278588, 0.08357654550278588, 0.08357654550278588, 0.08331122313611038, 0.08224993366940833, 0.08224993366940833, 0.08251525603608384, 0.08198461130273282, 0.08198461130273282, 0.08092332183603078, 0.08065799946935527, 0.08092332183603078, 0.08092332183603078, 0.08012735473600424, 0.08039267710267975, 0.08012735473600424, 0.07986203236932873, 0.08039267710267975, 0.08065799946935527, 0.08118864420270629, 0.08118864420270629, 0.08171928893605732, 0.08224993366940833, 0.08304590076943487, 0.08304590076943487, 0.08357654550278588, 0.08463783496948793, 0.08490315733616344, 0.08516847970283895, 0.08543380206951447, 0.08622976916954099, 0.08622976916954099, 0.08676041390289202, 0.08702573626956753, 0.08729105863624304, 0.08729105863624304, 0.08729105863624304, 0.08755638100291854, 0.08782170336959405, 0.08861767046962059, 0.08994428230299814, 0.13796763067126558], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/RNA_pol_Rpb4.gap.json b/pfam_gap_rates/RNA_pol_Rpb4.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..1bc25bc27787ebfb4245172d91d351a607b1ccc9
--- /dev/null
+++ b/pfam_gap_rates/RNA_pol_Rpb4.gap.json
@@ -0,0 +1 @@
+{"family": "RNA_pol_Rpb4", "n_seqs": 718, "length": 154, "gap_rates": [0.6504178272980501, 0.28551532033426186, 0.266016713091922, 0.2604456824512535, 0.25487465181058494, 0.2479108635097493, 0.24233983286908078, 0.24094707520891365, 0.2381615598885794, 0.23537604456824512, 0.233983286908078, 0.23537604456824512, 0.5194986072423399, 0.24233983286908078, 0.24512534818941503, 0.24373259052924792, 0.2520891364902507, 0.25487465181058494, 0.3384401114206128, 0.2924791086350975, 0.2966573816155989, 0.5682451253481894, 0.7256267409470752, 0.8342618384401114, 0.8676880222841226, 0.8857938718662952, 0.871866295264624, 0.9011142061281338, 0.9052924791086351, 0.9331476323119777, 0.9498607242339833, 0.9456824512534819, 0.9206128133704735, 0.9025069637883009, 0.8969359331476323, 0.862116991643454, 0.9345403899721448, 0.8467966573816156, 0.9066852367688022, 0.9401114206128134, 0.9498607242339833, 0.9233983286908078, 0.8955431754874652, 0.7896935933147632, 0.733983286908078, 0.6434540389972145, 0.5668523676880223, 0.4610027855153203, 0.24373259052924792, 0.18245125348189414, 0.12952646239554316, 0.09749303621169916, 0.08356545961002786, 0.07938718662952646, 0.07799442896935933, 0.07381615598885793, 0.06824512534818941, 0.06545961002785515, 0.06128133704735376, 0.055710306406685235, 0.057103064066852366, 0.05013927576601671, 0.04735376044568245, 0.04456824512534819, 0.04178272980501393, 0.04178272980501393, 0.04178272980501393, 0.9275766016713092, 0.9066852367688022, 0.628133704735376, 0.05153203342618384, 0.04735376044568245, 0.04596100278551532, 0.04735376044568245, 0.04317548746518106, 0.12395543175487465, 0.04317548746518106, 0.04456824512534819, 0.034818941504178275, 0.8788300835654597, 0.9080779944289693, 0.9164345403899722, 0.9122562674094707, 0.8983286908077994, 0.8746518105849582, 0.033426183844011144, 0.03064066852367688, 0.02924791086350975, 0.027855153203342618, 0.02924791086350975, 0.025069637883008356, 0.025069637883008356, 0.025069637883008356, 0.025069637883008356, 0.9206128133704735, 0.018105849582172703, 0.03064066852367688, 0.020891364902506964, 0.8774373259052924, 0.9345403899721448, 0.947075208913649, 0.9094707520891365, 0.713091922005571, 0.013927576601671309, 0.012534818941504178, 0.011142061281337047, 0.013927576601671309, 0.012534818941504178, 0.009749303621169917, 0.009749303621169917, 0.011142061281337047, 0.011142061281337047, 0.012534818941504178, 0.012534818941504178, 0.013927576601671309, 0.016713091922005572, 0.016713091922005572, 0.016713091922005572, 0.018105849582172703, 0.018105849582172703, 0.018105849582172703, 0.016713091922005572, 0.020891364902506964, 0.022284122562674095, 0.025069637883008356, 0.03064066852367688, 0.03899721448467967, 0.04456824512534819, 0.05013927576601671, 0.054317548746518104, 0.05988857938718663, 0.16434540389972144, 0.9484679665738162, 0.9345403899721448, 0.07520891364902507, 0.09331476323119778, 0.9387186629526463, 0.9442896935933147, 0.9122562674094707, 0.08495821727019498, 0.08774373259052924, 0.09749303621169916, 0.09610027855153204, 0.09192200557103064, 0.09331476323119778, 0.09610027855153204, 0.09749303621169916, 0.10445682451253482, 0.11559888579387187, 0.11977715877437325, 0.12952646239554316, 0.1796657381615599, 0.34958217270194986, 0.5835654596100278], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/RNA_pol_Rpc34.gap.json b/pfam_gap_rates/RNA_pol_Rpc34.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..140961fa3e82b22548cb888e54df1af431ff9356
--- /dev/null
+++ b/pfam_gap_rates/RNA_pol_Rpc34.gap.json
@@ -0,0 +1 @@
+{"family": "RNA_pol_Rpc34", "n_seqs": 454, "length": 405, "gap_rates": [0.9427312775330396, 0.9074889867841409, 0.7951541850220264, 0.7004405286343612, 0.6585903083700441, 0.6299559471365639, 0.5859030837004405, 0.5594713656387665, 0.539647577092511, 0.5352422907488987, 0.5176211453744494, 0.5154185022026432, 0.5154185022026432, 0.513215859030837, 0.5066079295154186, 0.5022026431718062, 0.5, 0.4889867841409692, 0.5, 0.8898678414096917, 0.8303964757709251, 0.6740088105726872, 0.44933920704845814, 0.44493392070484583, 0.43392070484581496, 0.42290748898678415, 0.42070484581497797, 0.4185022026431718, 0.41629955947136565, 0.4185022026431718, 0.41629955947136565, 0.41409691629955947, 0.41409691629955947, 0.4118942731277533, 0.8832599118942731, 0.8656387665198237, 0.5044052863436124, 0.44052863436123346, 0.41409691629955947, 0.40308370044052866, 0.3876651982378855, 0.3854625550660793, 0.3876651982378855, 0.381057268722467, 0.3788546255506608, 0.3722466960352423, 0.36784140969163, 0.3634361233480176, 0.3634361233480176, 0.36123348017621143, 0.3634361233480176, 0.36123348017621143, 0.36784140969163, 0.36123348017621143, 0.3634361233480176, 0.3634361233480176, 0.3634361233480176, 0.36123348017621143, 0.36123348017621143, 0.3568281938325991, 0.3524229074889868, 0.3568281938325991, 0.9185022026431718, 0.6740088105726872, 0.3656387665198238, 0.3458149779735683, 0.3458149779735683, 0.3458149779735683, 0.3832599118942731, 0.3436123348017621, 0.3436123348017621, 0.34140969162995594, 0.34140969162995594, 0.3392070484581498, 0.44273127753303965, 0.41629955947136565, 0.3964757709251101, 0.3722466960352423, 0.3656387665198238, 0.3524229074889868, 0.3524229074889868, 0.31497797356828194, 0.28854625550660795, 0.28193832599118945, 0.2665198237885463, 0.2643171806167401, 0.2621145374449339, 0.2621145374449339, 0.2621145374449339, 0.2621145374449339, 0.9251101321585903, 0.2621145374449339, 0.2621145374449339, 0.2643171806167401, 0.2643171806167401, 0.2643171806167401, 0.2643171806167401, 0.2599118942731278, 0.2599118942731278, 0.2599118942731278, 0.2599118942731278, 0.2577092511013216, 0.2555066079295154, 0.2555066079295154, 0.2555066079295154, 0.2577092511013216, 0.2577092511013216, 0.2555066079295154, 0.2555066079295154, 0.2555066079295154, 0.2533039647577093, 0.2511013215859031, 0.2621145374449339, 0.2533039647577093, 0.2533039647577093, 0.2533039647577093, 0.2511013215859031, 0.2511013215859031, 0.24669603524229075, 0.24669603524229075, 0.2444933920704846, 0.2444933920704846, 0.24669603524229075, 0.24669603524229075, 0.2422907488986784, 0.2422907488986784, 0.2444933920704846, 0.2444933920704846, 0.2444933920704846, 0.2444933920704846, 0.2422907488986784, 0.2422907488986784, 0.2422907488986784, 0.2422907488986784, 0.2422907488986784, 0.24008810572687225, 0.24008810572687225, 0.23788546255506607, 0.24008810572687225, 0.2444933920704846, 0.24669603524229075, 0.27312775330396477, 0.2687224669603524, 0.2422907488986784, 0.24669603524229075, 0.2444933920704846, 0.24669603524229075, 0.2444933920704846, 0.2422907488986784, 0.2422907488986784, 0.2422907488986784, 0.2422907488986784, 0.2422907488986784, 0.2422907488986784, 0.2422907488986784, 0.2422907488986784, 0.2422907488986784, 0.2422907488986784, 0.24669603524229075, 0.2488986784140969, 0.2488986784140969, 0.2488986784140969, 0.2488986784140969, 0.2533039647577093, 0.2533039647577093, 0.2488986784140969, 0.2533039647577093, 0.2533039647577093, 0.2511013215859031, 0.2511013215859031, 0.2511013215859031, 0.2511013215859031, 0.2511013215859031, 0.2511013215859031, 0.2511013215859031, 0.2511013215859031, 0.2533039647577093, 0.2555066079295154, 0.2555066079295154, 0.2555066079295154, 0.2555066079295154, 0.2577092511013216, 0.2577092511013216, 0.2577092511013216, 0.2599118942731278, 0.2665198237885463, 0.27973568281938327, 0.3039647577092511, 0.34801762114537443, 0.3700440528634361, 0.3898678414096916, 0.40969162995594716, 0.4185022026431718, 0.460352422907489, 0.5748898678414097, 0.7907488986784141, 0.8039647577092511, 0.8061674008810573, 0.8083700440528634, 0.8656387665198237, 0.8678414096916299, 0.8766519823788547, 0.8810572687224669, 0.8832599118942731, 0.8854625550660793, 0.8876651982378855, 0.8876651982378855, 0.8920704845814978, 0.8964757709251101, 0.8964757709251101, 0.9008810572687225, 0.9074889867841409, 0.9074889867841409, 0.9140969162995595, 0.9185022026431718, 0.9405286343612335, 0.947136563876652, 0.9273127753303965, 0.9140969162995595, 0.9118942731277533, 0.9074889867841409, 0.9052863436123348, 0.8964757709251101, 0.8964757709251101, 0.8964757709251101, 0.8898678414096917, 0.8876651982378855, 0.8876651982378855, 0.8854625550660793, 0.8832599118942731, 0.8788546255506607, 0.8722466960352423, 0.8678414096916299, 0.8590308370044053, 0.8414096916299559, 0.8546255506607929, 0.8480176211453745, 0.8392070484581498, 0.8325991189427313, 0.8303964757709251, 0.8370044052863436, 0.7995594713656388, 0.7775330396475771, 0.7422907488986784, 0.711453744493392, 0.6784140969162996, 0.526431718061674, 0.4977973568281938, 0.486784140969163, 0.486784140969163, 0.4801762114537445, 0.47577092511013214, 0.47577092511013214, 0.473568281938326, 0.46916299559471364, 0.46255506607929514, 0.45594713656387664, 0.42731277533039647, 0.4052863436123348, 0.3722466960352423, 0.3590308370044053, 0.3458149779735683, 0.3392070484581498, 0.33480176211453744, 0.3303964757709251, 0.3303964757709251, 0.3303964757709251, 0.3303964757709251, 0.3303964757709251, 0.32599118942731276, 0.3237885462555066, 0.3237885462555066, 0.32599118942731276, 0.3237885462555066, 0.3370044052863436, 0.32819383259911894, 0.31718061674008813, 0.8832599118942731, 0.31057268722466963, 0.31057268722466963, 0.30837004405286345, 0.30837004405286345, 0.3039647577092511, 0.3039647577092511, 0.2973568281938326, 0.2973568281938326, 0.2973568281938326, 0.2973568281938326, 0.2973568281938326, 0.2973568281938326, 0.2973568281938326, 0.2973568281938326, 0.2973568281938326, 0.2973568281938326, 0.2973568281938326, 0.2973568281938326, 0.2973568281938326, 0.2973568281938326, 0.2973568281938326, 0.2973568281938326, 0.2973568281938326, 0.29955947136563876, 0.3039647577092511, 0.31057268722466963, 0.31277533039647576, 0.8788546255506607, 0.8039647577092511, 0.5550660792951542, 0.4581497797356828, 0.44933920704845814, 0.460352422907489, 0.3964757709251101, 0.3920704845814978, 0.3964757709251101, 0.3832599118942731, 0.3964757709251101, 0.3964757709251101, 0.3986784140969163, 0.40748898678414097, 0.4185022026431718, 0.4779735682819383, 0.4911894273127753, 0.5242290748898678, 0.7599118942731278, 0.7444933920704846, 0.7687224669603524, 0.762114537444934, 0.762114537444934, 0.7533039647577092, 0.8546255506607929, 0.8744493392070485, 0.8854625550660793, 0.8920704845814978, 0.9096916299559471, 0.9162995594713657, 0.9251101321585903, 0.9273127753303965, 0.9295154185022027, 0.933920704845815, 0.9361233480176211, 0.9361233480176211, 0.9405286343612335, 0.9493392070484582, 0.9493392070484582, 0.9449339207048458, 0.9405286343612335, 0.9361233480176211, 0.933920704845815, 0.9317180616740088, 0.9295154185022027, 0.9251101321585903, 0.9185022026431718, 0.9140969162995595, 0.8986784140969163, 0.8876651982378855, 0.8766519823788547, 0.8612334801762115, 0.8524229074889867, 0.7224669603524229, 0.6277533039647577, 0.6013215859030837, 0.5748898678414097, 0.5462555066079295, 0.5176211453744494, 0.4955947136563877, 0.4779735682819383, 0.46916299559471364, 0.44273127753303965, 0.42070484581497797, 0.4052863436123348, 0.3898678414096916, 0.381057268722467, 0.3700440528634361, 0.3722466960352423, 0.3722466960352423, 0.3722466960352423, 0.3744493392070485, 0.3744493392070485, 0.3766519823788546, 0.3788546255506608, 0.3788546255506608, 0.3832599118942731, 0.3920704845814978, 0.3920704845814978, 0.394273127753304, 0.3964757709251101, 0.3986784140969163, 0.3964757709251101, 0.3964757709251101, 0.3964757709251101, 0.3986784140969163, 0.40748898678414097, 0.4118942731277533, 0.40748898678414097, 0.40748898678414097, 0.40969162995594716, 0.4118942731277533, 0.4118942731277533, 0.4118942731277533, 0.41409691629955947, 0.4185022026431718, 0.42070484581497797, 0.4251101321585903, 0.44493392070484583, 0.6894273127753304], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/RNB.gap.json b/pfam_gap_rates/RNB.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..8ae07ea3e3578c6545c7ec36c09565cef3c93fa0
--- /dev/null
+++ b/pfam_gap_rates/RNB.gap.json
@@ -0,0 +1 @@
+{"family": "RNB", "n_seqs": 3344, "length": 386, "gap_rates": [0.24551435406698566, 0.22099282296650719, 0.20125598086124402, 0.19108851674641147, 0.17972488038277512, 0.16507177033492823, 0.15101674641148324, 0.13516746411483255, 0.12350478468899521, 0.11602870813397129, 0.11602870813397129, 0.11513157894736842, 0.11483253588516747, 0.11513157894736842, 0.1139354066985646, 0.11273923444976076, 0.11244019138755981, 0.1118421052631579, 0.11124401913875598, 0.11064593301435406, 0.10586124401913875, 0.10436602870813397, 0.1034688995215311, 0.1034688995215311, 0.1034688995215311, 0.1034688995215311, 0.1276913875598086, 0.16088516746411483, 0.1438397129186603, 0.11931818181818182, 0.8947368421052632, 0.9240430622009569, 0.9141746411483254, 0.8741028708133971, 0.11273923444976076, 0.12888755980861244, 0.9270334928229665, 0.22188995215311005, 0.10197368421052631, 0.1007775119617225, 0.1007775119617225, 0.1007775119617225, 0.1007775119617225, 0.10017942583732058, 0.09988038277511961, 0.10107655502392345, 0.10107655502392345, 0.10107655502392345, 0.1013755980861244, 0.10227272727272728, 0.10197368421052631, 0.10257177033492823, 0.1013755980861244, 0.10107655502392345, 0.10047846889952153, 0.1007775119617225, 0.10047846889952153, 0.10017942583732058, 0.10047846889952153, 0.10047846889952153, 0.09988038277511961, 0.10017942583732058, 0.09988038277511961, 0.09958133971291866, 0.09898325358851674, 0.1007775119617225, 0.10167464114832536, 0.10197368421052631, 0.10287081339712918, 0.10316985645933015, 0.10406698564593302, 0.10316985645933015, 0.10257177033492823, 0.10197368421052631, 0.10017942583732058, 0.10017942583732058, 0.10047846889952153, 0.09898325358851674, 0.09928229665071771, 0.09898325358851674, 0.09898325358851674, 0.09838516746411484, 0.09808612440191387, 0.09838516746411484, 0.09868421052631579, 0.1255980861244019, 0.16208133971291866, 0.11483253588516747, 0.1007775119617225, 0.09838516746411484, 0.09838516746411484, 0.09838516746411484, 0.09688995215311005, 0.09688995215311005, 0.09659090909090909, 0.09629186602870814, 0.09599282296650717, 0.09599282296650717, 0.09599282296650717, 0.09629186602870814, 0.09659090909090909, 0.09629186602870814, 0.09599282296650717, 0.097188995215311, 0.09868421052631579, 0.09928229665071771, 0.11632775119617225, 0.11094497607655503, 0.8968301435406698, 0.097188995215311, 0.09659090909090909, 0.09659090909090909, 0.9342105263157895, 0.09838516746411484, 0.09778708133971292, 0.097188995215311, 0.09688995215311005, 0.09659090909090909, 0.09659090909090909, 0.097188995215311, 0.097188995215311, 0.097188995215311, 0.09778708133971292, 0.09838516746411484, 0.09958133971291866, 0.10406698564593302, 0.097188995215311, 0.09629186602870814, 0.09599282296650717, 0.09629186602870814, 0.09629186602870814, 0.09659090909090909, 0.09659090909090909, 0.09629186602870814, 0.097188995215311, 0.09778708133971292, 0.09808612440191387, 0.09778708133971292, 0.1297846889952153, 0.16507177033492823, 0.16895933014354067, 0.20663875598086123, 0.24850478468899523, 0.35825358851674644, 0.37948564593301437, 0.6028708133971292, 0.29814593301435405, 0.3833732057416268, 0.13247607655502391, 0.555622009569378, 0.7239832535885168, 0.7837918660287081, 0.8172846889952153, 0.8364234449760766, 0.854066985645933, 0.8932416267942583, 0.9075956937799043, 0.9201555023923444, 0.9327153110047847, 0.944677033492823, 0.9497607655502392, 0.9383971291866029, 0.9282296650717703, 0.9153708133971292, 0.9019138755980861, 0.8705143540669856, 0.8447966507177034, 0.8280502392344498, 0.7936602870813397, 0.756877990430622, 0.6088516746411483, 0.5188397129186603, 0.10645933014354067, 0.1055622009569378, 0.10526315789473684, 0.10406698564593302, 0.10287081339712918, 0.1013755980861244, 0.10107655502392345, 0.1007775119617225, 0.09958133971291866, 0.10017942583732058, 0.10017942583732058, 0.09958133971291866, 0.10047846889952153, 0.09988038277511961, 0.09958133971291866, 0.10017942583732058, 0.10017942583732058, 0.10107655502392345, 0.1007775119617225, 0.1076555023923445, 0.10795454545454546, 0.10855263157894737, 0.1270933014354067, 0.10705741626794259, 0.1187200956937799, 0.10855263157894737, 0.10915071770334928, 0.9294258373205742, 0.1312799043062201, 0.12739234449760767, 0.1229066985645933, 0.12081339712918661, 0.11812200956937799, 0.11692583732057417, 0.11602870813397129, 0.1139354066985646, 0.11303827751196172, 0.10944976076555024, 0.11064593301435406, 0.7598684210526315, 0.20663875598086123, 0.1686602870813397, 0.9037081339712919, 0.9315191387559809, 0.9398923444976076, 0.9491626794258373, 0.9476674641148325, 0.9351076555023924, 0.9210526315789473, 0.8860645933014354, 0.14413875598086123, 0.14623205741626794, 0.13666267942583732, 0.13247607655502391, 0.12619617224880383, 0.1223086124401914, 0.12320574162679426, 0.1223086124401914, 0.11752392344497607, 0.11572966507177034, 0.11303827751196172, 0.11124401913875598, 0.9123803827751196, 0.10795454545454546, 0.1076555023923445, 0.10735645933014354, 0.10735645933014354, 0.10705741626794259, 0.10705741626794259, 0.10735645933014354, 0.1076555023923445, 0.10645933014354067, 0.10645933014354067, 0.10645933014354067, 0.10675837320574162, 0.10645933014354067, 0.10675837320574162, 0.10645933014354067, 0.10645933014354067, 0.10645933014354067, 0.10705741626794259, 0.10735645933014354, 0.1076555023923445, 0.930322966507177, 0.9494617224880383, 0.9395933014354066, 0.715311004784689, 0.11931818181818182, 0.1187200956937799, 0.1187200956937799, 0.11632775119617225, 0.11572966507177034, 0.12440191387559808, 0.10944976076555024, 0.10915071770334928, 0.10885167464114832, 0.10885167464114832, 0.11064593301435406, 0.11244019138755981, 0.12200956937799043, 0.13456937799043062, 0.13636363636363635, 0.145933014354067, 0.18391148325358853, 0.1749401913875598, 0.16357655502392343, 0.16507177033492823, 0.16417464114832536, 0.1653708133971292, 0.1653708133971292, 0.1659688995215311, 0.1674641148325359, 0.16776315789473684, 0.16776315789473684, 0.16895933014354067, 0.2703349282296651, 0.2658492822966507, 0.26016746411483255, 0.2631578947368421, 0.25299043062200954, 0.5466507177033493, 0.8920454545454546, 0.9425837320574163, 0.7398325358851675, 0.5170454545454546, 0.2825956937799043, 0.270633971291866, 0.26764354066985646, 0.25239234449760767, 0.24820574162679426, 0.24491626794258373, 0.24700956937799043, 0.39683014354066987, 0.23385167464114834, 0.2305622009569378, 0.22547846889952153, 0.22278708133971292, 0.21740430622009568, 0.21620813397129188, 0.21351674641148324, 0.2132177033492823, 0.2138157894736842, 0.22188995215311005, 0.22757177033492823, 0.2284688995215311, 0.23145933014354067, 0.8238636363636364, 0.9473684210526315, 0.8519736842105263, 0.7954545454545454, 0.27811004784689, 0.2452153110047847, 0.21919856459330145, 0.208433014354067, 0.19497607655502391, 0.18510765550239233, 0.17643540669856458, 0.16686602870813397, 0.16148325358851676, 0.15938995215311005, 0.15311004784688995, 0.1486244019138756, 0.14324162679425836, 0.14144736842105263, 0.13696172248803828, 0.13367224880382775, 0.12619617224880383, 0.12440191387559808, 0.11961722488038277, 0.11991626794258373, 0.12081339712918661, 0.1145334928229665, 0.7398325358851675, 0.7467105263157895, 0.7766148325358851, 0.9401913875598086, 0.7613636363636364, 0.743122009569378, 0.7281698564593302, 0.11363636363636363, 0.11363636363636363, 0.1139354066985646, 0.11423444976076555, 0.1139354066985646, 0.11333732057416268, 0.11303827751196172, 0.11423444976076555, 0.12260765550239235, 0.13008373205741627, 0.11124401913875598, 0.11124401913875598, 0.11154306220095694, 0.11154306220095694, 0.11154306220095694, 0.1118421052631579, 0.1118421052631579, 0.11214114832535885, 0.11214114832535885, 0.11214114832535885, 0.11244019138755981, 0.11303827751196172, 0.1145334928229665, 0.12799043062200957, 0.13217703349282298, 0.13696172248803828, 0.1444377990430622, 0.1471291866028708, 0.14892344497607657, 0.14982057416267944, 0.17045454545454544, 0.1928827751196172, 0.24551435406698566, 0.33223684210526316, 0.5864234449760766], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/RNaseH_like.gap.json b/pfam_gap_rates/RNaseH_like.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..704ffc39db944a6a34a2093efd739374841614fc
--- /dev/null
+++ b/pfam_gap_rates/RNaseH_like.gap.json
@@ -0,0 +1 @@
+{"family": "RNaseH_like", "n_seqs": 219, "length": 162, "gap_rates": [0.54337899543379, 0.2602739726027397, 0.1963470319634703, 0.1780821917808219, 0.1324200913242009, 0.1187214611872146, 0.1187214611872146, 0.1187214611872146, 0.1141552511415525, 0.1050228310502283, 0.0821917808219178, 0.0502283105022831, 0.0821917808219178, 0.0593607305936073, 0.0365296803652968, 0.0319634703196347, 0.0273972602739726, 0.0273972602739726, 0.0273972602739726, 0.0273972602739726, 0.0273972602739726, 0.0273972602739726, 0.0273972602739726, 0.0273972602739726, 0.0273972602739726, 0.0273972602739726, 0.0273972602739726, 0.9360730593607306, 0.8264840182648402, 0.2785388127853881, 0.0273972602739726, 0.0273972602739726, 0.9452054794520548, 0.0273972602739726, 0.0273972602739726, 0.0273972602739726, 0.0228310502283105, 0.0228310502283105, 0.0228310502283105, 0.0228310502283105, 0.0228310502283105, 0.0228310502283105, 0.0228310502283105, 0.0228310502283105, 0.0228310502283105, 0.0228310502283105, 0.0228310502283105, 0.0228310502283105, 0.0228310502283105, 0.0228310502283105, 0.0228310502283105, 0.0228310502283105, 0.0228310502283105, 0.0228310502283105, 0.0228310502283105, 0.0228310502283105, 0.0228310502283105, 0.0228310502283105, 0.0228310502283105, 0.0228310502283105, 0.9360730593607306, 0.730593607305936, 0.0228310502283105, 0.0228310502283105, 0.0273972602739726, 0.0228310502283105, 0.0228310502283105, 0.0228310502283105, 0.0228310502283105, 0.0228310502283105, 0.0136986301369863, 0.0136986301369863, 0.0136986301369863, 0.0136986301369863, 0.0136986301369863, 0.0136986301369863, 0.0136986301369863, 0.0182648401826484, 0.0182648401826484, 0.0136986301369863, 0.0136986301369863, 0.0136986301369863, 0.0136986301369863, 0.0136986301369863, 0.0136986301369863, 0.0136986301369863, 0.0182648401826484, 0.0182648401826484, 0.7671232876712328, 0.7671232876712328, 0.7853881278538812, 0.8082191780821918, 0.7945205479452054, 0.7808219178082192, 0.7671232876712328, 0.7625570776255708, 0.0228310502283105, 0.0365296803652968, 0.0730593607305936, 0.1095890410958904, 0.1461187214611872, 0.9452054794520548, 0.8995433789954338, 0.5981735159817352, 0.4657534246575342, 0.2054794520547945, 0.1415525114155251, 0.1187214611872146, 0.0639269406392694, 0.0593607305936073, 0.0273972602739726, 0.0228310502283105, 0.0228310502283105, 0.0228310502283105, 0.0182648401826484, 0.0182648401826484, 0.0182648401826484, 0.0182648401826484, 0.0182648401826484, 0.0182648401826484, 0.0182648401826484, 0.726027397260274, 0.726027397260274, 0.0182648401826484, 0.0182648401826484, 0.0182648401826484, 0.0182648401826484, 0.0182648401826484, 0.0182648401826484, 0.0182648401826484, 0.0182648401826484, 0.0182648401826484, 0.0182648401826484, 0.0182648401826484, 0.0182648401826484, 0.0228310502283105, 0.0228310502283105, 0.0228310502283105, 0.0228310502283105, 0.0228310502283105, 0.0228310502283105, 0.0228310502283105, 0.0273972602739726, 0.0273972602739726, 0.0273972602739726, 0.0273972602739726, 0.0273972602739726, 0.0273972602739726, 0.0273972602739726, 0.0319634703196347, 0.0319634703196347, 0.0365296803652968, 0.0319634703196347, 0.0365296803652968, 0.0319634703196347, 0.0319634703196347, 0.0319634703196347, 0.0319634703196347, 0.0319634703196347, 0.045662100456621, 0.2374429223744292, 0.5616438356164384], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/RNase_H.gap.json b/pfam_gap_rates/RNase_H.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ca668228e2a47589b819247c756c90cec0456610
--- /dev/null
+++ b/pfam_gap_rates/RNase_H.gap.json
@@ -0,0 +1 @@
+{"family": "RNase_H", "n_seqs": 3018, "length": 170, "gap_rates": [0.7992047713717694, 0.572233267064281, 0.33929754804506296, 0.19715043074884028, 0.15606361829025844, 0.13552021206096754, 0.1172962226640159, 0.11563949635520213, 0.11365142478462557, 0.11298873426110007, 0.14678595096090125, 0.14446653412856197, 0.19814446653412857, 0.16964877402253148, 0.9294234592445328, 0.9459907223326707, 0.8416169648774022, 0.13452617627567925, 0.13320079522862824, 0.1172962226640159, 0.10801855533465872, 0.8631544068919814, 0.10404241219350563, 0.10106030483764082, 0.09807819748177601, 0.09741550695825049, 0.8074884029158383, 0.09840954274353876, 0.09807819748177601, 0.6819085487077535, 0.09874088800530152, 0.11133200795228629, 0.10834990059642147, 0.32538104705102716, 0.7862823061630219, 0.8870112657388999, 0.9188204108681246, 0.8479125248508946, 0.6792577866136514, 0.2276341948310139, 0.1358515573227303, 0.8631544068919814, 0.7299536116633533, 0.09940357852882704, 0.09609012591119948, 0.09973492379058979, 0.09476474486414845, 0.10569913850231942, 0.10106030483764082, 0.170311464546057, 0.8943008614976806, 0.7611000662690524, 0.31146454605699136, 0.09211398277004638, 0.073558648111332, 0.06527501656726309, 0.06394963552021206, 0.06262425447316103, 0.05798542080848244, 0.05467196819085487, 0.051027170311464545, 0.050033134526176276, 0.04705102717031146, 0.04440026507620941, 0.044068919814446654, 0.04241219350563287, 0.042080848243870116, 0.0414181577203446, 0.040755467196819085, 0.04009277667329357, 0.7422133863485753, 0.04108681245858184, 0.09675281643472498, 0.949635520212061, 0.923790589794566, 0.09178263750828364, 0.07223326706428099, 0.04009277667329357, 0.7375745526838966, 0.8545394300861497, 0.9280980781974818, 0.9493041749502982, 0.8949635520212061, 0.7992047713717694, 0.6176275679257787, 0.03711066931742876, 0.03512259774685222, 0.03412856196156395, 0.03346587143803843, 0.03313452617627568, 0.03445990722332671, 0.03777335984095427, 0.039761431411530816, 0.05798542080848244, 0.07886017229953611, 0.08548707753479125, 0.08482438701126574, 0.0659377070907886, 0.039761431411530816, 0.10901259111994699, 0.06726308813783963, 0.06626905235255136, 0.06991385023194169, 0.8565275016567263, 0.2263088137839629, 0.18919814446653413, 0.18223989396951623, 0.18422796554009277, 0.21305500331345262, 0.21901921802518223, 0.18654738237243207, 0.15772034459907222, 0.09774685222001325, 0.08018555334658714, 0.20212060967528164, 0.13485752153744202, 0.1143141153081511, 0.14280980781974817, 0.10337972166998012, 0.11696487740225314, 0.7047713717693836, 0.31245858184227965, 0.1597084161696488, 0.1050364479787939, 0.09708416169648774, 0.9449966865473823, 0.22962226640159045, 0.09575878064943671, 0.06494367130550033, 0.05765407554671968, 0.05467196819085487, 0.05467196819085487, 0.06328694499668655, 0.22597746852220013, 0.21371769383697814, 0.14512922465208747, 0.08416169648774023, 0.0758780649436713, 0.9224652087475149, 0.8277004638833665, 0.0775347912524851, 0.0752153744201458, 0.07322730284956926, 0.07554671968190854, 0.07786613651424784, 0.07852882703777336, 0.08250497017892644, 0.0851557322730285, 0.08780649436713055, 0.09145129224652088, 0.10006626905235255, 0.09940357852882704, 0.10106030483764082, 0.10669317428760769, 0.10371106693174288, 0.5738899933730948, 0.5006626905235255, 0.10768721007289596, 0.10669317428760769, 0.10801855533465872, 0.11066931742876077, 0.1096752816434725, 0.11000662690523526, 0.11100066269052353, 0.11464546056991386, 0.12226640159045726, 0.1295559973492379, 0.1550695825049702, 0.22133863485752153, 0.4377070907886017], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/ROS_MUCR.gap.json b/pfam_gap_rates/ROS_MUCR.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d63619e25b2d6d36a59032098e20f3a8d91273b5
--- /dev/null
+++ b/pfam_gap_rates/ROS_MUCR.gap.json
@@ -0,0 +1 @@
+{"family": "ROS_MUCR", "n_seqs": 436, "length": 136, "gap_rates": [0.8692660550458715, 0.24770642201834864, 0.13761467889908258, 0.11009174311926606, 0.07568807339449542, 0.06880733944954129, 0.06880733944954129, 0.06880733944954129, 0.06880733944954129, 0.06880733944954129, 0.06422018348623854, 0.06422018348623854, 0.06422018348623854, 0.06422018348623854, 0.06192660550458716, 0.06422018348623854, 0.06651376146788991, 0.06422018348623854, 0.05963302752293578, 0.05963302752293578, 0.05963302752293578, 0.05963302752293578, 0.05963302752293578, 0.05733944954128441, 0.05733944954128441, 0.05733944954128441, 0.05504587155963303, 0.05504587155963303, 0.05504587155963303, 0.05504587155963303, 0.05504587155963303, 0.05504587155963303, 0.05504587155963303, 0.052752293577981654, 0.052752293577981654, 0.05504587155963303, 0.05504587155963303, 0.05504587155963303, 0.052752293577981654, 0.05504587155963303, 0.06422018348623854, 0.06880733944954129, 0.06422018348623854, 0.06422018348623854, 0.07568807339449542, 0.10779816513761468, 0.7270642201834863, 0.823394495412844, 0.8967889908256881, 0.9220183486238532, 0.9426605504587156, 0.9495412844036697, 0.9288990825688074, 0.9151376146788991, 0.8715596330275229, 0.8004587155963303, 0.591743119266055, 0.3394495412844037, 0.10550458715596331, 0.045871559633027525, 0.0389908256880734, 0.034403669724770644, 0.03211009174311927, 0.03211009174311927, 0.027522935779816515, 0.02522935779816514, 0.02522935779816514, 0.02522935779816514, 0.022935779816513763, 0.022935779816513763, 0.020642201834862386, 0.9197247706422018, 0.01834862385321101, 0.016055045871559634, 0.011467889908256881, 0.006880733944954129, 0.006880733944954129, 0.006880733944954129, 0.006880733944954129, 0.009174311926605505, 0.009174311926605505, 0.009174311926605505, 0.009174311926605505, 0.009174311926605505, 0.009174311926605505, 0.009174311926605505, 0.009174311926605505, 0.009174311926605505, 0.009174311926605505, 0.8142201834862385, 0.009174311926605505, 0.006880733944954129, 0.006880733944954129, 0.006880733944954129, 0.36926605504587157, 0.006880733944954129, 0.006880733944954129, 0.006880733944954129, 0.006880733944954129, 0.006880733944954129, 0.006880733944954129, 0.006880733944954129, 0.006880733944954129, 0.009174311926605505, 0.009174311926605505, 0.011467889908256881, 0.011467889908256881, 0.011467889908256881, 0.011467889908256881, 0.011467889908256881, 0.013761467889908258, 0.013761467889908258, 0.013761467889908258, 0.013761467889908258, 0.01834862385321101, 0.01834862385321101, 0.01834862385321101, 0.020642201834862386, 0.020642201834862386, 0.020642201834862386, 0.020642201834862386, 0.022935779816513763, 0.022935779816513763, 0.022935779816513763, 0.02522935779816514, 0.027522935779816515, 0.027522935779816515, 0.03211009174311927, 0.0389908256880734, 0.04357798165137615, 0.045871559633027525, 0.052752293577981654, 0.06192660550458716, 0.10321100917431193, 0.11009174311926606, 0.15825688073394495], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/RRM_4.gap.json b/pfam_gap_rates/RRM_4.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c0250b4dc9c1f8fe1af772600e6edbfc61dad2a6
--- /dev/null
+++ b/pfam_gap_rates/RRM_4.gap.json
@@ -0,0 +1 @@
+{"family": "RRM_4", "n_seqs": 349, "length": 91, "gap_rates": [0.06303724928366762, 0.04871060171919771, 0.034383954154727794, 0.034383954154727794, 0.03151862464183381, 0.03151862464183381, 0.02865329512893983, 0.02865329512893983, 0.025787965616045846, 0.025787965616045846, 0.025787965616045846, 0.025787965616045846, 0.025787965616045846, 0.025787965616045846, 0.025787965616045846, 0.025787965616045846, 0.025787965616045846, 0.02865329512893983, 0.025787965616045846, 0.025787965616045846, 0.025787965616045846, 0.025787965616045846, 0.025787965616045846, 0.02005730659025788, 0.02005730659025788, 0.02005730659025788, 0.02005730659025788, 0.02005730659025788, 0.022922636103151862, 0.02865329512893983, 0.025787965616045846, 0.025787965616045846, 0.025787965616045846, 0.025787965616045846, 0.025787965616045846, 0.02865329512893983, 0.022922636103151862, 0.022922636103151862, 0.022922636103151862, 0.022922636103151862, 0.025787965616045846, 0.022922636103151862, 0.025787965616045846, 0.025787965616045846, 0.025787965616045846, 0.025787965616045846, 0.025787965616045846, 0.02865329512893983, 0.025787965616045846, 0.025787965616045846, 0.025787965616045846, 0.02865329512893983, 0.025787965616045846, 0.025787965616045846, 0.025787965616045846, 0.022922636103151862, 0.025787965616045846, 0.02005730659025788, 0.02005730659025788, 0.022922636103151862, 0.022922636103151862, 0.022922636103151862, 0.022922636103151862, 0.022922636103151862, 0.022922636103151862, 0.03151862464183381, 0.034383954154727794, 0.034383954154727794, 0.03724928366762178, 0.04011461318051576, 0.04871060171919771, 0.04871060171919771, 0.05157593123209169, 0.05157593123209169, 0.05157593123209169, 0.05157593123209169, 0.05157593123209169, 0.05157593123209169, 0.05157593123209169, 0.054441260744985676, 0.054441260744985676, 0.05730659025787966, 0.05730659025787966, 0.05730659025787966, 0.05730659025787966, 0.05730659025787966, 0.06017191977077364, 0.06017191977077364, 0.06303724928366762, 0.06303724928366762, 0.09455587392550144], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/RRP7.gap.json b/pfam_gap_rates/RRP7.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..9020fcad589dec0c307e8e223f77c4ef76eabb54
--- /dev/null
+++ b/pfam_gap_rates/RRP7.gap.json
@@ -0,0 +1 @@
+{"family": "RRP7", "n_seqs": 308, "length": 166, "gap_rates": [0.37012987012987014, 0.30194805194805197, 0.237012987012987, 0.19480519480519481, 0.18181818181818182, 0.16883116883116883, 0.16558441558441558, 0.16233766233766234, 0.1590909090909091, 0.1525974025974026, 0.14285714285714285, 0.14285714285714285, 0.12987012987012986, 0.12012987012987013, 0.11363636363636363, 0.11038961038961038, 0.1038961038961039, 0.1038961038961039, 0.10064935064935066, 0.10064935064935066, 0.09740259740259741, 0.08441558441558442, 0.08116883116883117, 0.08116883116883117, 0.08116883116883117, 0.07792207792207792, 0.048701298701298704, 0.048701298701298704, 0.048701298701298704, 0.048701298701298704, 0.045454545454545456, 0.03571428571428571, 0.03571428571428571, 0.032467532467532464, 0.032467532467532464, 0.02922077922077922, 0.03571428571428571, 0.032467532467532464, 0.032467532467532464, 0.025974025974025976, 0.02922077922077922, 0.025974025974025976, 0.05844155844155844, 0.06493506493506493, 0.8798701298701299, 0.9383116883116883, 0.8733766233766234, 0.25, 0.18831168831168832, 0.13636363636363635, 0.01948051948051948, 0.012987012987012988, 0.012987012987012988, 0.012987012987012988, 0.00974025974025974, 0.00974025974025974, 0.00974025974025974, 0.00974025974025974, 0.012987012987012988, 0.012987012987012988, 0.012987012987012988, 0.7857142857142857, 0.801948051948052, 0.814935064935065, 0.8344155844155844, 0.9188311688311688, 0.9415584415584416, 0.935064935064935, 0.8474025974025974, 0.8181818181818182, 0.8051948051948052, 0.7922077922077922, 0.7272727272727273, 0.06168831168831169, 0.1461038961038961, 0.8636363636363636, 0.5714285714285714, 0.18831168831168832, 0.18506493506493507, 0.12987012987012986, 0.1590909090909091, 0.2662337662337662, 0.17857142857142858, 0.17857142857142858, 0.2077922077922078, 0.29545454545454547, 0.14935064935064934, 0.6038961038961039, 0.6493506493506493, 0.6818181818181818, 0.7337662337662337, 0.8766233766233766, 0.9058441558441559, 0.9318181818181818, 0.9383116883116883, 0.9415584415584416, 0.9383116883116883, 0.9253246753246753, 0.8928571428571429, 0.8636363636363636, 0.6948051948051948, 0.6590909090909091, 0.6233766233766234, 0.5876623376623377, 0.1038961038961039, 0.10064935064935066, 0.06168831168831169, 0.04220779220779221, 0.032467532467532464, 0.025974025974025976, 0.032467532467532464, 0.032467532467532464, 0.032467532467532464, 0.03571428571428571, 0.03571428571428571, 0.04220779220779221, 0.06168831168831169, 0.1396103896103896, 0.07792207792207792, 0.06168831168831169, 0.06818181818181818, 0.05519480519480519, 0.9285714285714286, 0.7207792207792207, 0.03571428571428571, 0.02922077922077922, 0.02922077922077922, 0.032467532467532464, 0.032467532467532464, 0.032467532467532464, 0.032467532467532464, 0.03571428571428571, 0.03896103896103896, 0.03896103896103896, 0.045454545454545456, 0.045454545454545456, 0.05194805194805195, 0.06493506493506493, 0.06493506493506493, 0.07142857142857142, 0.07142857142857142, 0.07467532467532467, 0.07792207792207792, 0.08116883116883117, 0.08116883116883117, 0.08441558441558442, 0.08441558441558442, 0.08766233766233766, 0.08766233766233766, 0.08766233766233766, 0.08766233766233766, 0.08766233766233766, 0.09090909090909091, 0.09090909090909091, 0.09415584415584416, 0.09740259740259741, 0.09415584415584416, 0.09740259740259741, 0.10064935064935066, 0.11038961038961038, 0.8246753246753247, 0.12012987012987013, 0.1396103896103896, 0.16558441558441558, 0.19155844155844157, 0.34415584415584416], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/RVP_2.gap.json b/pfam_gap_rates/RVP_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..47863c82023ba16044987272511fe65cb5f7af68
--- /dev/null
+++ b/pfam_gap_rates/RVP_2.gap.json
@@ -0,0 +1 @@
+{"family": "RVP_2", "n_seqs": 757, "length": 137, "gap_rates": [0.9418758256274768, 0.6169088507265522, 0.5957727873183619, 0.5561426684280053, 0.5535006605019815, 0.5508586525759577, 0.5495376486129459, 0.5468956406869221, 0.5429326287978864, 0.5416116248348745, 0.5389696169088507, 0.535006605019815, 0.5310435931307794, 0.5165125495376486, 0.512549537648613, 0.5059445178335535, 0.5006605019815059, 0.4900924702774108, 0.48745046235138706, 0.48745046235138706, 0.4861294583883752, 0.4861294583883752, 0.48348745046235136, 0.4848084544253633, 0.48745046235138706, 0.4914134742404227, 0.4821664464993395, 0.4663143989431968, 0.44914134742404227, 0.4134742404227213, 0.3527080581241744, 0.30250990752972257, 0.2813738441215324, 0.2747688243064729, 0.2311756935270806, 0.18229854689564068, 0.16248348745046234, 0.15984147952443858, 0.15587846763540292, 0.1571994715984148, 0.15323645970937913, 0.15587846763540292, 0.15587846763540292, 0.154557463672391, 0.15323645970937913, 0.15323645970937913, 0.15191545574636725, 0.15191545574636725, 0.15059445178335534, 0.154557463672391, 0.15323645970937913, 0.14795244385733158, 0.15059445178335534, 0.15587846763540292, 0.14927344782034346, 0.14927344782034346, 0.142668428005284, 0.1453104359313078, 0.14398943196829592, 0.142668428005284, 0.15191545574636725, 0.1453104359313078, 0.12417437252311757, 0.1215323645970938, 0.11624834874504623, 0.11096433289299867, 0.1096433289299868, 0.11492734478203434, 0.10700132100396301, 0.9392338177014531, 0.1096433289299868, 0.10039630118890357, 0.10303830911492734, 0.1083223249669749, 0.10568031704095113, 0.10303830911492734, 0.10700132100396301, 0.10171730515191546, 0.10700132100396301, 0.10435931307793923, 0.10700132100396301, 0.10039630118890357, 0.095112285336856, 0.08850726552179657, 0.08982826948480846, 0.08718626155878467, 0.09114927344782034, 0.08982826948480846, 0.09114927344782034, 0.09114927344782034, 0.08850726552179657, 0.08850726552179657, 0.08850726552179657, 0.08718626155878467, 0.08718626155878467, 0.08718626155878467, 0.08718626155878467, 0.083223249669749, 0.08190224570673713, 0.08190224570673713, 0.0845442536327609, 0.08718626155878467, 0.083223249669749, 0.07926023778071334, 0.9365918097754293, 0.08190224570673713, 0.07661822985468957, 0.07661822985468957, 0.07397622192866579, 0.07397622192866579, 0.071334214002642, 0.07001321003963012, 0.0726552179656539, 0.07397622192866579, 0.07661822985468957, 0.0845442536327609, 0.09379128137384413, 0.10435931307793923, 0.11360634081902246, 0.1334214002642008, 0.15059445178335534, 0.15587846763540292, 0.178335535006605, 0.21003963011889035, 0.22721268163804492, 0.2404227212681638, 0.24702774108322326, 0.2575957727873184, 0.26420079260237783, 0.30647291941875826, 0.3857331571994716, 0.4332892998678996, 0.4676354029062087, 0.5006605019815059, 0.5402906208718626, 0.5587846763540291, 0.7767503302509907], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/RVT_2.gap.json b/pfam_gap_rates/RVT_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..11aa01336448665b66d8734a8d90e871003d2aea
--- /dev/null
+++ b/pfam_gap_rates/RVT_2.gap.json
@@ -0,0 +1 @@
+{"family": "RVT_2", "n_seqs": 2998, "length": 248, "gap_rates": [0.7244829886591061, 0.6541027351567712, 0.6120747164776518, 0.5990660440293529, 0.5943962641761175, 0.5883922615076718, 0.5810540360240161, 0.561707805203469, 0.5456971314209473, 0.537358238825884, 0.5333555703802535, 0.5140093395597065, 0.5010006671114076, 0.4923282188125417, 0.4903268845897265, 0.4879919946631087, 0.4836557705136758, 0.48065376917945296, 0.47765176784523017, 0.47531687791861243, 0.4686457638425617, 0.46597731821214144, 0.46497665110073383, 0.4599733155436958, 0.45697131420947296, 0.4639759839893262, 0.4829886591060707, 0.4866577718478986, 0.5016677785190127, 0.5250166777851901, 0.49399599733155436, 0.48465643762508337, 0.4599733155436958, 0.43395597064709807, 0.4296197464976651, 0.4276184122748499, 0.4266177451634423, 0.42895263509006004, 0.4269513008672448, 0.4286190793862575, 0.428285523682455, 0.428285523682455, 0.4279519679786524, 0.4322881921280854, 0.4312875250166778, 0.42995330220146766, 0.4346230820547031, 0.442628418945964, 0.43929286190793865, 0.4399599733155437, 0.44229486324216144, 0.4482988659106071, 0.4419613075383589, 0.4306204136090727, 0.4276184122748499, 0.4269513008672448, 0.42595063375583725, 0.42628418945963975, 0.4296197464976651, 0.43162108072048033, 0.43162108072048033, 0.4279519679786524, 0.4286190793862575, 0.4276184122748499, 0.42895263509006004, 0.42995330220146766, 0.4276184122748499, 0.4269513008672448, 0.4226150767178119, 0.4212808539026017, 0.42061374249499667, 0.4202801867911941, 0.4136090727151434, 0.4162775183455637, 0.4142761841227485, 0.41194129419613074, 0.4106070713809206, 0.4082721814543029, 0.4042695130086724, 0.4016010673782522, 0.3979319546364243, 0.38225483655770515, 0.38125416944629753, 0.3802535023348899, 0.37825216811207474, 0.3695797198132088, 0.3672448298865911, 0.36490993995997334, 0.3655770513675784, 0.36490993995997334, 0.36791194129419613, 0.3682454969979987, 0.36791194129419613, 0.36624416277518346, 0.3675783855903936, 0.36524349566377584, 0.36791194129419613, 0.3672448298865911, 0.3599066044029353, 0.3602401601067378, 0.3639092728485657, 0.36324216144096066, 0.3739159439626418, 0.36891260840560375, 0.3722481654436291, 0.3735823882588392, 0.37691794529686456, 0.38258839226150765, 0.5980653769179453, 0.5740493662441628, 0.47798532354903267, 0.39392928619079387, 0.3949299533022015, 0.39192795196797864, 0.3935957304869913, 0.39459639759839893, 0.395263509006004, 0.3932621747831888, 0.39392928619079387, 0.3935957304869913, 0.39426284189459637, 0.39826551034022684, 0.3989326217478319, 0.39859906604402934, 0.400266844563042, 0.40093395597064707, 0.3979319546364243, 0.4019346230820547, 0.40326884589726486, 0.409606404269513, 0.4149432955303536, 0.4142761841227485, 0.41661107404936626, 0.41961307538358905, 0.4209472981987992, 0.42328218812541696, 0.4219479653102068, 0.4256170780520347, 0.4216144096064043, 0.42061374249499667, 0.41927951967978655, 0.414609739826551, 0.4132755170113409, 0.41194129419613074, 0.4132755170113409, 0.4149432955303536, 0.414609739826551, 0.4149432955303536, 0.4136090727151434, 0.41194129419613074, 0.4136090727151434, 0.4142761841227485, 0.414609739826551, 0.4152768512341561, 0.41694462975316876, 0.41827885256837893, 0.43395597064709807, 0.49666444296197465, 0.5020013342228152, 0.5123415610406938, 0.4769846564376251, 0.4279519679786524, 0.9266177451634423, 0.4229486324216144, 0.41827885256837893, 0.41260840560373585, 0.4082721814543029, 0.4016010673782522, 0.40093395597064707, 0.4019346230820547, 0.39959973315543695, 0.3972648432288192, 0.3935957304869913, 0.3989326217478319, 0.40093395597064707, 0.4029352901934623, 0.4019346230820547, 0.40226817878585724, 0.4069379586390927, 0.4082721814543029, 0.4152768512341561, 0.4683122081387592, 0.4446297531687792, 0.43962641761174115, 0.4306204136090727, 0.40226817878585724, 0.40226817878585724, 0.40060040026684457, 0.39959973315543695, 0.39593062041360905, 0.39859906604402934, 0.40126751167444963, 0.40093395597064707, 0.40060040026684457, 0.40093395597064707, 0.3912608405603736, 0.390927284856571, 0.40527018012008004, 0.41194129419613074, 0.40060040026684457, 0.40060040026684457, 0.40126751167444963, 0.40360240160106736, 0.40493662441627754, 0.4066044029352902, 0.4069379586390927, 0.4106070713809206, 0.4112741827885257, 0.4122748498999333, 0.41561040693795864, 0.4179452968645764, 0.4219479653102068, 0.8042028018679119, 0.7211474316210807, 0.42728485657104737, 0.4296197464976651, 0.43262174783188795, 0.4349566377585057, 0.437625083388926, 0.4546364242828552, 0.4559706470980654, 0.45697131420947296, 0.4603068712474983, 0.4626417611741161, 0.46597731821214144, 0.466977985323549, 0.466977985323549, 0.4683122081387592, 0.4703135423615744, 0.47298198799199465, 0.4749833222148099, 0.47665110073382255, 0.48198799199466313, 0.49132755170113407, 0.5063375583722481, 0.5176784523015343, 0.5200133422281521, 0.5253502334889927, 0.5280186791194129, 0.5320213475650434, 0.5436957971981321, 0.5500333555703802, 0.552368245496998, 0.5567044696464309, 0.5620413609072715, 0.576050700466978, 0.6340893929286191, 0.9226150767178118], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/RabGAP-TBC.gap.json b/pfam_gap_rates/RabGAP-TBC.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d940057af7c001f9bf70e9ce087c3400054d7757
--- /dev/null
+++ b/pfam_gap_rates/RabGAP-TBC.gap.json
@@ -0,0 +1 @@
+{"family": "RabGAP-TBC", "n_seqs": 5000, "length": 288, "gap_rates": [0.9378, 0.5842, 0.4572, 0.4286, 0.4268, 0.4222, 0.4198, 0.418, 0.4178, 0.4178, 0.4174, 0.4174, 0.4174, 0.4174, 0.46, 0.567, 0.801, 0.8144, 0.8396, 0.853, 0.8588, 0.8918, 0.9434, 0.9454, 0.9068, 0.8818, 0.855, 0.8436, 0.822, 0.8066, 0.7964, 0.7642, 0.7598, 0.74, 0.7132, 0.6978, 0.671, 0.66, 0.6336, 0.576, 0.541, 0.5076, 0.4728, 0.429, 0.4014, 0.3848, 0.377, 0.3854, 0.3772, 0.3642, 0.3578, 0.3562, 0.3486, 0.3426, 0.3372, 0.3384, 0.3264, 0.3468, 0.3052, 0.2856, 0.2652, 0.879, 0.2466, 0.2426, 0.2382, 0.2352, 0.233, 0.229, 0.2274, 0.2272, 0.226, 0.2256, 0.2252, 0.2262, 0.2262, 0.8694, 0.9328, 0.9174, 0.69, 0.3, 0.273, 0.8474, 0.9314, 0.6612, 0.2592, 0.2352, 0.2264, 0.2154, 0.2016, 0.1932, 0.1854, 0.1814, 0.1756, 0.1626, 0.1474, 0.1444, 0.143, 0.1434, 0.1426, 0.1418, 0.141, 0.1408, 0.1398, 0.1398, 0.1394, 0.1384, 0.1374, 0.1358, 0.1612, 0.1508, 0.1356, 0.1272, 0.1266, 0.125, 0.1202, 0.1148, 0.1142, 0.1136, 0.1106, 0.1092, 0.1088, 0.1072, 0.1064, 0.1056, 0.9076, 0.9112, 0.9158, 0.927, 0.931, 0.9402, 0.943, 0.9442, 0.9472, 0.9498, 0.9452, 0.943, 0.9422, 0.939, 0.9282, 0.92, 0.9138, 0.91, 0.8904, 0.4528, 0.1428, 0.1436, 0.1482, 0.9338, 0.1396, 0.1358, 0.1374, 0.1314, 0.8672, 0.875, 0.8822, 0.8952, 0.913, 0.9334, 0.9428, 0.9458, 0.9486, 0.948, 0.9442, 0.9382, 0.9274, 0.8986, 0.8872, 0.8788, 0.8698, 0.8634, 0.1034, 0.1028, 0.1024, 0.1026, 0.1016, 0.1018, 0.1024, 0.1008, 0.1012, 0.9228, 0.9026, 0.5966, 0.3752, 0.1174, 0.1178, 0.1148, 0.1106, 0.1068, 0.1072, 0.1076, 0.1074, 0.1082, 0.1194, 0.1508, 0.1474, 0.1328, 0.9208, 0.9494, 0.8794, 0.1212, 0.1148, 0.1108, 0.1054, 0.1072, 0.0998, 0.0976, 0.0928, 0.093, 0.0934, 0.0918, 0.0922, 0.0982, 0.0936, 0.0934, 0.0936, 0.0926, 0.0938, 0.0928, 0.0934, 0.0936, 0.0942, 0.0964, 0.1008, 0.1028, 0.9484, 0.9338, 0.1204, 0.1106, 0.109, 0.1622, 0.1102, 0.1064, 0.109, 0.1002, 0.1002, 0.1006, 0.1006, 0.1, 0.1008, 0.1014, 0.1022, 0.1018, 0.1018, 0.1196, 0.1032, 0.103, 0.1032, 0.1042, 0.1058, 0.1066, 0.107, 0.1078, 0.109, 0.1092, 0.109, 0.1096, 0.111, 0.403, 0.1128, 0.1146, 0.1158, 0.879, 0.1494, 0.1762, 0.1828, 0.8384, 0.9028, 0.8034, 0.2492, 0.2016, 0.6614, 0.2046, 0.2046, 0.205, 0.2086, 0.21, 0.2108, 0.2146, 0.2202, 0.2228, 0.2504, 0.2636, 0.2892, 0.3222, 0.3558, 0.4192, 0.4776, 0.687], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Radial_spoke_3.gap.json b/pfam_gap_rates/Radial_spoke_3.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..023eac8e273e662fac5a834287cc17c45803a7de
--- /dev/null
+++ b/pfam_gap_rates/Radial_spoke_3.gap.json
@@ -0,0 +1 @@
+{"family": "Radial_spoke_3", "n_seqs": 175, "length": 305, "gap_rates": [0.6971428571428572, 0.4, 0.37714285714285717, 0.36, 0.32, 0.32, 0.32, 0.32, 0.32, 0.3028571428571429, 0.3028571428571429, 0.3028571428571429, 0.3028571428571429, 0.3028571428571429, 0.3028571428571429, 0.3028571428571429, 0.3028571428571429, 0.3028571428571429, 0.3028571428571429, 0.3028571428571429, 0.30857142857142855, 0.30857142857142855, 0.30857142857142855, 0.9371428571428572, 0.9485714285714286, 0.9257142857142857, 0.5657142857142857, 0.5314285714285715, 0.44571428571428573, 0.4228571428571429, 0.4057142857142857, 0.4057142857142857, 0.4057142857142857, 0.4057142857142857, 0.3942857142857143, 0.37714285714285717, 0.33714285714285713, 0.33714285714285713, 0.3028571428571429, 0.29714285714285715, 0.9428571428571428, 0.2857142857142857, 0.26857142857142857, 0.2742857142857143, 0.26857142857142857, 0.26285714285714284, 0.2571428571428571, 0.9142857142857143, 0.9485714285714286, 0.9371428571428572, 0.8914285714285715, 0.26857142857142857, 0.2857142857142857, 0.2857142857142857, 0.2914285714285714, 0.29714285714285715, 0.2914285714285714, 0.29714285714285715, 0.2914285714285714, 0.2914285714285714, 0.3142857142857143, 0.3314285714285714, 0.5828571428571429, 0.6914285714285714, 0.7714285714285715, 0.8457142857142858, 0.8742857142857143, 0.9257142857142857, 0.9485714285714286, 0.9428571428571428, 0.9257142857142857, 0.8628571428571429, 0.7714285714285715, 0.7371428571428571, 0.64, 0.28, 0.26285714285714284, 0.25142857142857145, 0.25142857142857145, 0.2342857142857143, 0.21142857142857144, 0.2, 0.2, 0.19428571428571428, 0.2, 0.2, 0.18857142857142858, 0.18857142857142858, 0.18857142857142858, 0.18285714285714286, 0.21142857142857144, 0.21142857142857144, 0.17714285714285713, 0.16, 0.16, 0.16, 0.14857142857142858, 0.14857142857142858, 0.17142857142857143, 0.15428571428571428, 0.16, 0.14857142857142858, 0.16, 0.9257142857142857, 0.14857142857142858, 0.14285714285714285, 0.14285714285714285, 0.14857142857142858, 0.14857142857142858, 0.14857142857142858, 0.14857142857142858, 0.14285714285714285, 0.14857142857142858, 0.14285714285714285, 0.13714285714285715, 0.12571428571428572, 0.13142857142857142, 0.13142857142857142, 0.13142857142857142, 0.12571428571428572, 0.12571428571428572, 0.12, 0.12, 0.13714285714285715, 0.12571428571428572, 0.12, 0.12, 0.12, 0.12, 0.12, 0.12, 0.11428571428571428, 0.10857142857142857, 0.10857142857142857, 0.10857142857142857, 0.10285714285714286, 0.10285714285714286, 0.10857142857142857, 0.9142857142857143, 0.10857142857142857, 0.11428571428571428, 0.09714285714285714, 0.08571428571428572, 0.08, 0.07428571428571429, 0.07428571428571429, 0.07428571428571429, 0.08571428571428572, 0.08, 0.07428571428571429, 0.08, 0.08, 0.08, 0.08, 0.08, 0.08, 0.08, 0.08571428571428572, 0.08571428571428572, 0.08571428571428572, 0.08571428571428572, 0.08, 0.08, 0.08, 0.08, 0.08, 0.08, 0.08, 0.08, 0.08, 0.08, 0.08, 0.08, 0.08, 0.08, 0.08, 0.08, 0.08, 0.08, 0.08, 0.08571428571428572, 0.08571428571428572, 0.08571428571428572, 0.08571428571428572, 0.09142857142857143, 0.08571428571428572, 0.08571428571428572, 0.08571428571428572, 0.08571428571428572, 0.08571428571428572, 0.08, 0.08, 0.08, 0.08, 0.08, 0.11428571428571428, 0.11428571428571428, 0.12571428571428572, 0.09142857142857143, 0.09142857142857143, 0.08, 0.08, 0.08, 0.08, 0.08, 0.08, 0.09714285714285714, 0.10285714285714286, 0.10285714285714286, 0.10857142857142857, 0.10857142857142857, 0.11428571428571428, 0.12, 0.12, 0.12, 0.12, 0.12, 0.12, 0.12571428571428572, 0.13142857142857142, 0.13714285714285715, 0.13714285714285715, 0.13142857142857142, 0.12571428571428572, 0.12571428571428572, 0.13142857142857142, 0.13142857142857142, 0.13142857142857142, 0.13142857142857142, 0.13142857142857142, 0.13714285714285715, 0.13714285714285715, 0.13714285714285715, 0.13714285714285715, 0.13714285714285715, 0.13714285714285715, 0.13714285714285715, 0.13714285714285715, 0.13714285714285715, 0.13714285714285715, 0.13714285714285715, 0.13714285714285715, 0.13714285714285715, 0.13714285714285715, 0.13714285714285715, 0.13714285714285715, 0.13714285714285715, 0.13714285714285715, 0.13714285714285715, 0.13714285714285715, 0.13714285714285715, 0.13714285714285715, 0.13714285714285715, 0.14285714285714285, 0.14857142857142858, 0.14857142857142858, 0.1657142857142857, 0.16, 0.15428571428571428, 0.14857142857142858, 0.14857142857142858, 0.1657142857142857, 0.17714285714285713, 0.21714285714285714, 0.1657142857142857, 0.16, 0.17142857142857143, 0.1657142857142857, 0.17142857142857143, 0.17142857142857143, 0.17714285714285713, 0.17714285714285713, 0.17142857142857143, 0.17142857142857143, 0.17142857142857143, 0.17142857142857143, 0.17142857142857143, 0.17142857142857143, 0.17142857142857143, 0.17142857142857143, 0.17142857142857143, 0.17142857142857143, 0.17142857142857143, 0.18285714285714286, 0.18285714285714286, 0.18857142857142858, 0.18285714285714286, 0.18857142857142858, 0.18857142857142858, 0.19428571428571428, 0.2057142857142857, 0.21714285714285714, 0.24571428571428572, 0.2857142857142857, 0.2857142857142857, 0.2857142857142857, 0.2914285714285714, 0.3028571428571429, 0.30857142857142855, 0.3142857142857143, 0.3657142857142857, 0.41714285714285715, 0.49714285714285716, 0.6, 0.84], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Rap_GAP.gap.json b/pfam_gap_rates/Rap_GAP.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f4680d5e1b6b5104865aea3c3af78de674d23579
--- /dev/null
+++ b/pfam_gap_rates/Rap_GAP.gap.json
@@ -0,0 +1 @@
+{"family": "Rap_GAP", "n_seqs": 847, "length": 226, "gap_rates": [0.3282172373081464, 0.1511216056670602, 0.14639905548996457, 0.1357733175914994, 0.12987012987012986, 0.6103896103896104, 0.10861865407319952, 0.43565525383707204, 0.07674144037780402, 0.07319952774498228, 0.07319952774498228, 0.07201889020070838, 0.06965761511216056, 0.06965761511216056, 0.06965761511216056, 0.07083825265643448, 0.06965761511216056, 0.06965761511216056, 0.06965761511216056, 0.06729634002361275, 0.06611570247933884, 0.06729634002361275, 0.06611570247933884, 0.06493506493506493, 0.06493506493506493, 0.06493506493506493, 0.06611570247933884, 0.06375442739079103, 0.9409681227863046, 0.859504132231405, 0.06375442739079103, 0.06965761511216056, 0.06847697756788666, 0.06729634002361275, 0.06375442739079103, 0.0602125147579693, 0.0602125147579693, 0.06139315230224321, 0.06965761511216056, 0.06729634002361275, 0.1180637544273908, 0.33293978748524206, 0.18890200708382526, 0.08146399055489964, 0.0755608028335301, 0.06493506493506493, 0.05785123966942149, 0.06257378984651712, 0.0602125147579693, 0.0590318772136954, 0.05785123966942149, 0.05785123966942149, 0.05785123966942149, 0.0602125147579693, 0.0590318772136954, 0.0602125147579693, 0.0602125147579693, 0.0590318772136954, 0.05430932703659976, 0.05430932703659976, 0.05430932703659976, 0.05548996458087367, 0.05430932703659976, 0.05548996458087367, 0.05430932703659976, 0.05076741440377804, 0.05076741440377804, 0.053128689492325853, 0.9090909090909091, 0.21841794569067297, 0.12396694214876033, 0.1050767414403778, 0.08736717827626919, 0.08146399055489964, 0.07319952774498228, 0.06139315230224321, 0.05667060212514758, 0.0590318772136954, 0.05785123966942149, 0.05785123966942149, 0.05667060212514758, 0.047225501770956316, 0.047225501770956316, 0.04604486422668241, 0.047225501770956316, 0.043683589138134596, 0.043683589138134596, 0.043683589138134596, 0.043683589138134596, 0.043683589138134596, 0.043683589138134596, 0.043683589138134596, 0.043683589138134596, 0.04604486422668241, 0.05076741440377804, 0.09681227863046045, 0.628099173553719, 0.05667060212514758, 0.047225501770956316, 0.8866587957497049, 0.935064935064935, 0.8748524203069658, 0.047225501770956316, 0.048406139315230225, 0.048406139315230225, 0.0590318772136954, 0.05194805194805195, 0.049586776859504134, 0.049586776859504134, 0.048406139315230225, 0.047225501770956316, 0.05194805194805195, 0.048406139315230225, 0.053128689492325853, 0.053128689492325853, 0.05785123966942149, 0.05548996458087367, 0.05667060212514758, 0.05667060212514758, 0.05785123966942149, 0.1511216056670602, 0.9031877213695395, 0.9043683589138135, 0.910271546635183, 0.9327036599763873, 0.9456906729634003, 0.948051948051948, 0.9456906729634003, 0.9386068476977568, 0.9173553719008265, 0.9055489964580874, 0.9043683589138135, 0.9031877213695395, 0.17001180637544275, 0.4935064935064935, 0.8051948051948052, 0.8500590318772137, 0.8996458087367178, 0.9315230224321134, 0.9397874852420307, 0.9161747343565525, 0.8760330578512396, 0.8288075560802833, 0.7744982290436836, 0.3789846517119244, 0.34710743801652894, 0.3364817001180638, 0.07910271546635184, 0.06965761511216056, 0.06847697756788666, 0.06729634002361275, 0.06375442739079103, 0.06493506493506493, 0.06493506493506493, 0.06375442739079103, 0.06375442739079103, 0.06493506493506493, 0.06729634002361275, 0.06729634002361275, 0.06729634002361275, 0.06611570247933884, 0.07792207792207792, 0.06611570247933884, 0.06847697756788666, 0.07083825265643448, 0.06847697756788666, 0.06965761511216056, 0.07083825265643448, 0.47107438016528924, 0.15702479338842976, 0.08500590318772137, 0.07792207792207792, 0.0755608028335301, 0.07674144037780402, 0.07674144037780402, 0.07674144037780402, 0.07910271546635184, 0.08146399055489964, 0.5454545454545454, 0.5395513577331759, 0.10035419126328217, 0.08028335301062574, 0.08028335301062574, 0.08028335301062574, 0.08264462809917356, 0.08618654073199528, 0.08618654073199528, 0.5171192443919717, 0.5171192443919717, 0.5182998819362455, 0.09681227863046045, 0.09681227863046045, 0.09681227863046045, 0.09681227863046045, 0.09799291617473435, 0.1038961038961039, 0.10979929161747344, 0.11097992916174734, 0.11688311688311688, 0.717827626918536, 0.7260920897284534, 0.7898465171192444, 0.820543093270366, 0.9090909090909091, 0.9492325855962219, 0.9244391971664699, 0.8524203069657615, 0.8028335301062574, 0.7615112160566706, 0.71900826446281, 0.7131050767414404, 0.14167650531286896, 0.8406139315230224, 0.20306965761511217, 0.21369539551357733, 0.2243211334120425, 0.2396694214876033, 0.2597402597402597, 0.2845336481700118, 0.3152302243211334, 0.33884297520661155, 0.3612750885478158, 0.3919716646989374, 0.4132231404958678, 0.5312868949232585, 0.8536009445100354], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/RcnB.gap.json b/pfam_gap_rates/RcnB.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..1e0d7d20326db9e50466695270381f712300a1ad
--- /dev/null
+++ b/pfam_gap_rates/RcnB.gap.json
@@ -0,0 +1 @@
+{"family": "RcnB", "n_seqs": 167, "length": 52, "gap_rates": [0.33532934131736525, 0.32335329341317365, 0.2994011976047904, 0.2634730538922156, 0.24550898203592814, 0.20359281437125748, 0.19760479041916168, 0.17964071856287425, 0.15568862275449102, 0.19161676646706588, 0.17365269461077845, 0.18562874251497005, 0.16167664670658682, 0.08982035928143713, 0.08383233532934131, 0.10778443113772455, 0.0718562874251497, 0.0718562874251497, 0.0658682634730539, 0.059880239520958084, 0.05389221556886228, 0.029940119760479042, 0.011976047904191617, 0.011976047904191617, 0.005988023952095809, 0.0658682634730539, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.9281437125748503, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.07784431137724551, 0.005988023952095809, 0.005988023952095809, 0.005988023952095809, 0.005988023952095809, 0.017964071856287425, 0.11377245508982035, 0.49101796407185627], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/RdgC.gap.json b/pfam_gap_rates/RdgC.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d9383711c0c7b6c6eb74c653669c7a928232bcbf
--- /dev/null
+++ b/pfam_gap_rates/RdgC.gap.json
@@ -0,0 +1 @@
+{"family": "RdgC", "n_seqs": 313, "length": 305, "gap_rates": [0.36421725239616615, 0.3514376996805112, 0.23003194888178913, 0.2268370607028754, 0.22364217252396165, 0.21405750798722045, 0.17891373801916932, 0.17891373801916932, 0.15654952076677317, 0.15335463258785942, 0.15335463258785942, 0.15335463258785942, 0.15335463258785942, 0.15654952076677317, 0.22044728434504793, 0.21725239616613418, 0.17891373801916932, 0.9297124600638977, 0.15335463258785942, 0.13738019169329074, 0.12140575079872204, 0.11182108626198083, 0.09584664536741214, 0.08626198083067092, 0.07667731629392971, 0.0670926517571885, 0.0670926517571885, 0.0670926517571885, 0.0670926517571885, 0.06389776357827476, 0.06389776357827476, 0.06389776357827476, 0.06389776357827476, 0.06389776357827476, 0.06389776357827476, 0.06389776357827476, 0.06070287539936102, 0.06070287539936102, 0.05750798722044728, 0.054313099041533544, 0.054313099041533544, 0.054313099041533544, 0.054313099041533544, 0.054313099041533544, 0.054313099041533544, 0.054313099041533544, 0.054313099041533544, 0.054313099041533544, 0.054313099041533544, 0.051118210862619806, 0.04792332268370607, 0.04792332268370607, 0.06389776357827476, 0.16932907348242812, 0.8146964856230032, 0.9201277955271565, 0.8945686900958466, 0.29073482428115016, 0.04792332268370607, 0.04472843450479233, 0.04472843450479233, 0.04472843450479233, 0.04153354632587859, 0.038338658146964855, 0.038338658146964855, 0.038338658146964855, 0.038338658146964855, 0.038338658146964855, 0.038338658146964855, 0.038338658146964855, 0.038338658146964855, 0.038338658146964855, 0.038338658146964855, 0.038338658146964855, 0.038338658146964855, 0.038338658146964855, 0.038338658146964855, 0.038338658146964855, 0.038338658146964855, 0.038338658146964855, 0.038338658146964855, 0.038338658146964855, 0.038338658146964855, 0.038338658146964855, 0.038338658146964855, 0.038338658146964855, 0.038338658146964855, 0.038338658146964855, 0.038338658146964855, 0.038338658146964855, 0.038338658146964855, 0.04153354632587859, 0.04472843450479233, 0.04792332268370607, 0.04472843450479233, 0.04792332268370607, 0.04792332268370607, 0.054313099041533544, 0.04792332268370607, 0.04472843450479233, 0.9329073482428115, 0.04153354632587859, 0.04153354632587859, 0.04153354632587859, 0.04153354632587859, 0.04153354632587859, 0.04153354632587859, 0.04153354632587859, 0.04153354632587859, 0.04153354632587859, 0.04153354632587859, 0.04153354632587859, 0.04153354632587859, 0.04153354632587859, 0.04153354632587859, 0.04153354632587859, 0.04153354632587859, 0.04153354632587859, 0.04153354632587859, 0.038338658146964855, 0.038338658146964855, 0.038338658146964855, 0.038338658146964855, 0.04153354632587859, 0.04153354632587859, 0.04472843450479233, 0.04472843450479233, 0.04472843450479233, 0.04472843450479233, 0.04472843450479233, 0.04472843450479233, 0.04153354632587859, 0.04153354632587859, 0.038338658146964855, 0.038338658146964855, 0.04153354632587859, 0.04153354632587859, 0.038338658146964855, 0.038338658146964855, 0.038338658146964855, 0.038338658146964855, 0.038338658146964855, 0.038338658146964855, 0.038338658146964855, 0.038338658146964855, 0.04153354632587859, 0.038338658146964855, 0.04792332268370607, 0.038338658146964855, 0.04153354632587859, 0.04472843450479233, 0.04472843450479233, 0.04472843450479233, 0.04472843450479233, 0.04153354632587859, 0.04153354632587859, 0.04153354632587859, 0.04472843450479233, 0.04472843450479233, 0.04792332268370607, 0.051118210862619806, 0.054313099041533544, 0.08945686900958466, 0.14057507987220447, 0.12779552715654952, 0.12779552715654952, 0.14057507987220447, 0.14376996805111822, 0.14057507987220447, 0.15654952076677317, 0.1853035143769968, 0.17252396166134185, 0.18210862619808307, 0.1853035143769968, 0.1853035143769968, 0.18849840255591055, 0.18849840255591055, 0.19169329073482427, 0.19169329073482427, 0.19488817891373802, 0.19808306709265175, 0.19808306709265175, 0.19488817891373802, 0.19488817891373802, 0.19488817891373802, 0.19488817891373802, 0.19488817891373802, 0.8977635782747604, 0.2268370607028754, 0.18849840255591055, 0.19488817891373802, 0.18849840255591055, 0.19169329073482427, 0.19488817891373802, 0.19488817891373802, 0.19488817891373802, 0.19488817891373802, 0.19488817891373802, 0.19808306709265175, 0.19808306709265175, 0.19808306709265175, 0.19488817891373802, 0.19488817891373802, 0.19488817891373802, 0.19488817891373802, 0.21725239616613418, 0.21725239616613418, 0.20766773162939298, 0.24281150159744408, 0.19488817891373802, 0.19488817891373802, 0.19488817891373802, 0.19488817891373802, 0.19488817891373802, 0.19488817891373802, 0.19488817891373802, 0.19488817891373802, 0.19808306709265175, 0.19488817891373802, 0.19488817891373802, 0.19488817891373802, 0.19488817891373802, 0.19488817891373802, 0.19488817891373802, 0.19488817891373802, 0.19488817891373802, 0.19488817891373802, 0.19488817891373802, 0.19169329073482427, 0.19169329073482427, 0.2012779552715655, 0.19169329073482427, 0.19169329073482427, 0.19169329073482427, 0.19169329073482427, 0.19169329073482427, 0.19169329073482427, 0.19169329073482427, 0.19169329073482427, 0.19169329073482427, 0.19169329073482427, 0.19169329073482427, 0.19488817891373802, 0.19488817891373802, 0.19488817891373802, 0.19488817891373802, 0.19488817891373802, 0.19488817891373802, 0.19488817891373802, 0.19488817891373802, 0.19488817891373802, 0.19488817891373802, 0.19488817891373802, 0.19488817891373802, 0.19488817891373802, 0.19488817891373802, 0.19488817891373802, 0.19488817891373802, 0.19488817891373802, 0.19488817891373802, 0.19488817891373802, 0.19808306709265175, 0.19808306709265175, 0.2012779552715655, 0.19808306709265175, 0.19808306709265175, 0.19808306709265175, 0.19808306709265175, 0.21725239616613418, 0.24920127795527156, 0.31309904153354634, 0.4952076677316294, 0.34824281150159747, 0.25878594249201275, 0.23003194888178913, 0.2012779552715655, 0.2012779552715655, 0.19808306709265175, 0.19808306709265175, 0.19808306709265175, 0.19808306709265175, 0.19808306709265175, 0.19808306709265175, 0.19808306709265175, 0.19808306709265175, 0.19808306709265175, 0.19808306709265175, 0.19808306709265175, 0.19808306709265175, 0.19808306709265175, 0.19808306709265175, 0.19808306709265175, 0.19808306709265175, 0.19808306709265175, 0.19808306709265175, 0.19808306709265175, 0.20447284345047922, 0.20447284345047922, 0.20447284345047922, 0.21405750798722045, 0.21725239616613418, 0.22044728434504793, 0.24600638977635783, 0.38338658146964855, 0.5782747603833865], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/RecA.gap.json b/pfam_gap_rates/RecA.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..6e043bd430e1758f43d2d5e455ab32cd4fb542d7
--- /dev/null
+++ b/pfam_gap_rates/RecA.gap.json
@@ -0,0 +1 @@
+{"family": "RecA", "n_seqs": 2463, "length": 264, "gap_rates": [0.32561916362159965, 0.13844904587900933, 0.09460008120178644, 0.09013398294762484, 0.08566788469346326, 0.08485586682907025, 0.08201380430369468, 0.08160779537149818, 0.08160779537149818, 0.08120178643930166, 0.08079577750710516, 0.08079577750710516, 0.07998375964271214, 0.07917174177831912, 0.07917174177831912, 0.07876573284612262, 0.07876573284612262, 0.07917174177831912, 0.07835972391392611, 0.07226958993097848, 0.07064555420219244, 0.06983353633779943, 0.07348761672756801, 0.0682095006090134, 0.0686155095412099, 0.0682095006090134, 0.6837190418189201, 0.06942752740560293, 0.06293138449045879, 0.057247259439707675, 0.05602923264311815, 0.0535931790499391, 0.04912708079577751, 0.04709703613479497, 0.04709703613479497, 0.046691027202598455, 0.046691027202598455, 0.04628501827040195, 0.04587900933820544, 0.04506699147381242, 0.0438489646772229, 0.0438489646772229, 0.0438489646772229, 0.04425497360941941, 0.04425497360941941, 0.04425497360941941, 0.10353227771010962, 0.0438489646772229, 0.04303694681282988, 0.04303694681282988, 0.04263093788063337, 0.04141291108404385, 0.04100690215184734, 0.04141291108404385, 0.04100690215184734, 0.04141291108404385, 0.04141291108404385, 0.040194884287454324, 0.04060089321965083, 0.04100690215184734, 0.04100690215184734, 0.04181892001624036, 0.042224928948436866, 0.04181892001624036, 0.04141291108404385, 0.04181892001624036, 0.04181892001624036, 0.042224928948436866, 0.04303694681282988, 0.04344295574502639, 0.04344295574502639, 0.04344295574502639, 0.0438489646772229, 0.04344295574502639, 0.04303694681282988, 0.04303694681282988, 0.04344295574502639, 0.04425497360941941, 0.0438489646772229, 0.04263093788063337, 0.04181892001624036, 0.04263093788063337, 0.04263093788063337, 0.04263093788063337, 0.042224928948436866, 0.04303694681282988, 0.04303694681282988, 0.04303694681282988, 0.04344295574502639, 0.04425497360941941, 0.04425497360941941, 0.04425497360941941, 0.04263093788063337, 0.04344295574502639, 0.044660982541615914, 0.04587900933820544, 0.04506699147381242, 0.045473000406008934, 0.04587900933820544, 0.04587900933820544, 0.04628501827040195, 0.045473000406008934, 0.045473000406008934, 0.044660982541615914, 0.045473000406008934, 0.04587900933820544, 0.045473000406008934, 0.044660982541615914, 0.04506699147381242, 0.04628501827040195, 0.04790905399918798, 0.046691027202598455, 0.04709703613479497, 0.04831506293138449, 0.048721071863580996, 0.049939098660170524, 0.04831506293138449, 0.04912708079577751, 0.049939098660170524, 0.05034510759236703, 0.049939098660170524, 0.049939098660170524, 0.05034510759236703, 0.05034510759236703, 0.049939098660170524, 0.04912708079577751, 0.04912708079577751, 0.05318717011774259, 0.04953308972797402, 0.05034510759236703, 0.04953308972797402, 0.049939098660170524, 0.05034510759236703, 0.05115712545676005, 0.05237515225334957, 0.0535931790499391, 0.05440519691433211, 0.05602923264311815, 0.058465286236297195, 0.059277304100690216, 0.06008932196508323, 0.061713357693869264, 0.061713357693869264, 0.06252537555826228, 0.06293138449045879, 0.06293138449045879, 0.06293138449045879, 0.06414941128704832, 0.06414941128704832, 0.0637434023548518, 0.06496142915144133, 0.06699147381242387, 0.06496142915144133, 0.06414941128704832, 0.06414941128704832, 0.0637434023548518, 0.0637434023548518, 0.06293138449045879, 0.06293138449045879, 0.06293138449045879, 0.06293138449045879, 0.06333739342265529, 0.06211936662606577, 0.06211936662606577, 0.06090133982947625, 0.06130734876167276, 0.06130734876167276, 0.06130734876167276, 0.06130734876167276, 0.06130734876167276, 0.06211936662606577, 0.06130734876167276, 0.06090133982947625, 0.06090133982947625, 0.060495330897279743, 0.060495330897279743, 0.06090133982947625, 0.06090133982947625, 0.06090133982947625, 0.06090133982947625, 0.060495330897279743, 0.06090133982947625, 0.06090133982947625, 0.060495330897279743, 0.06130734876167276, 0.061713357693869264, 0.061713357693869264, 0.061713357693869264, 0.06130734876167276, 0.061713357693869264, 0.06211936662606577, 0.06293138449045879, 0.06293138449045879, 0.06008932196508323, 0.06414941128704832, 0.058465286236297195, 0.05805927730410069, 0.05765326837190418, 0.05805927730410069, 0.06252537555826228, 0.06293138449045879, 0.06414941128704832, 0.06333739342265529, 0.06293138449045879, 0.06293138449045879, 0.06293138449045879, 0.06293138449045879, 0.06252537555826228, 0.06211936662606577, 0.061713357693869264, 0.061713357693869264, 0.061713357693869264, 0.061713357693869264, 0.061713357693869264, 0.06130734876167276, 0.06130734876167276, 0.060495330897279743, 0.06090133982947625, 0.060495330897279743, 0.060495330897279743, 0.061713357693869264, 0.061713357693869264, 0.06211936662606577, 0.061713357693869264, 0.061713357693869264, 0.06130734876167276, 0.061713357693869264, 0.06252537555826228, 0.0637434023548518, 0.9200162403572879, 0.06252537555826228, 0.06252537555826228, 0.06130734876167276, 0.061713357693869264, 0.061713357693869264, 0.061713357693869264, 0.061713357693869264, 0.06211936662606577, 0.06333739342265529, 0.06293138449045879, 0.06293138449045879, 0.06333739342265529, 0.06333739342265529, 0.06333739342265529, 0.06293138449045879, 0.06333739342265529, 0.06414941128704832, 0.06496142915144133, 0.06496142915144133, 0.06496142915144133, 0.06536743808363785, 0.06577344701583435, 0.06699147381242387, 0.06739748274462039, 0.0682095006090134, 0.06902151847340642, 0.06902151847340642, 0.0730816077953715, 0.07551766138855055, 0.07714169711733658, 0.07714169711733658, 0.07835972391392611, 0.08160779537149818, 0.16483962647178238], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/RecG_wedge.gap.json b/pfam_gap_rates/RecG_wedge.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d8f3fb4209a678f9a5ce16ba9f7bbb569a0bb355
--- /dev/null
+++ b/pfam_gap_rates/RecG_wedge.gap.json
@@ -0,0 +1 @@
+{"family": "RecG_wedge", "n_seqs": 1807, "length": 180, "gap_rates": [0.8633093525179856, 0.6912008854454897, 0.6546762589928058, 0.5893746541228556, 0.375207526286663, 0.2927504150525733, 0.22966242390702823, 0.19037078029883786, 0.1671278361925844, 0.13890426120641947, 0.11898173768677366, 0.1079136690647482, 0.07581627006087438, 0.05644714997232983, 0.043718871057000556, 0.03818483674598783, 0.03154399557277255, 0.030437188710570006, 0.028223574986164915, 0.027116768123962368, 0.026009961261759824, 0.024349750968456003, 0.02158273381294964, 0.01936912008854455, 0.016602102933038185, 0.014388489208633094, 0.014388489208633094, 0.01383508577753182, 0.012728278915329275, 0.01162147205312673, 0.01162147205312673, 0.01162147205312673, 0.012174875484228001, 0.01162147205312673, 0.01162147205312673, 0.01715550636413946, 0.013281682346430549, 0.02324294410625346, 0.059767570558937465, 0.05921416712783619, 0.04316546762589928, 0.018815716657443277, 0.01770890979524073, 0.01549529607083564, 0.010514665190924184, 0.012728278915329275, 0.010514665190924184, 0.01162147205312673, 0.011068068622025456, 0.012174875484228001, 0.011068068622025456, 0.01162147205312673, 0.010514665190924184, 0.008854454897620365, 0.008301051466519093, 0.008301051466519093, 0.00996126175982291, 0.010514665190924184, 0.008301051466519093, 0.008854454897620365, 0.014388489208633094, 0.935251798561151, 0.9070282235749861, 0.023796347537354733, 0.016048699501936912, 0.02767017155506364, 0.02324294410625346, 0.9435528500276702, 0.024903154399557276, 0.9125622578859989, 0.01549529607083564, 0.9346983951300498, 0.8909795240730493, 0.016602102933038185, 0.018262313226342003, 0.027116768123962368, 0.021029330381848368, 0.028223574986164915, 0.027116768123962368, 0.03763143331488655, 0.04316546762589928, 0.033757609297177645, 0.01715550636413946, 0.016602102933038185, 0.014941892639734366, 0.014388489208633094, 0.01936912008854455, 0.024903154399557276, 0.028223574986164915, 0.010514665190924184, 0.016048699501936912, 0.9286109573879358, 0.01715550636413946, 0.01549529607083564, 0.013281682346430549, 0.008854454897620365, 0.013281682346430549, 0.9319313779745434, 0.042058660763696736, 0.9302711676812396, 0.05921416712783619, 0.018815716657443277, 0.016048699501936912, 0.01162147205312673, 0.01549529607083564, 0.013281682346430549, 0.014388489208633094, 0.014941892639734366, 0.8500276701715551, 0.8179302711676812, 0.021029330381848368, 0.01715550636413946, 0.014941892639734366, 0.014941892639734366, 0.014388489208633094, 0.01549529607083564, 0.01549529607083564, 0.01549529607083564, 0.014941892639734366, 0.01715550636413946, 0.02158273381294964, 0.5511898173768678, 0.1710016602102933, 0.10957387935805202, 0.08190370780298838, 0.09850581073602656, 0.0774764803541782, 0.16104039845047038, 0.08190370780298838, 0.03597122302158273, 0.02545655783065855, 0.02877697841726619, 0.0387382401770891, 0.03541781959048146, 0.03597122302158273, 0.03320420586607637, 0.03320420586607637, 0.11234089651355839, 0.06862202545655784, 0.05921416712783619, 0.06087437742114001, 0.07083563918096292, 0.0752628666297731, 0.08079690094078583, 0.07581627006087438, 0.07083563918096292, 0.5096845600442723, 0.7753182069728832, 0.8915329275041505, 0.9441062534587714, 0.9241837299391257, 0.8594355285002767, 0.6956281128942999, 0.4443829551743221, 0.07360265633646929, 0.07249584947426674, 0.06862202545655784, 0.06917542888765911, 0.06917542888765911, 0.07028223574986164, 0.07194244604316546, 0.07581627006087438, 0.07636967349197565, 0.08024349750968456, 0.08467072495849474, 0.08743774211400111, 0.0957387935805202, 0.10348644161593802, 0.11732152739346983, 0.12894299944659657, 0.15384615384615385, 0.16325401217487548, 0.18815716657443277, 0.2058660763696735, 0.25345877144438295, 0.32872163807415605, 0.4139457664637521, 0.4914222468179303, 0.7315993359158827, 0.9014941892639734], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Recep_L_domain.gap.json b/pfam_gap_rates/Recep_L_domain.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..5bf88ed1dbeeda72d7130035238f6dbac2e0f5c5
--- /dev/null
+++ b/pfam_gap_rates/Recep_L_domain.gap.json
@@ -0,0 +1 @@
+{"family": "Recep_L_domain", "n_seqs": 832, "length": 145, "gap_rates": [0.2620192307692308, 0.15865384615384615, 0.13822115384615385, 0.12740384615384615, 0.11538461538461539, 0.11538461538461539, 0.11057692307692307, 0.109375, 0.10576923076923077, 0.10336538461538461, 0.10096153846153846, 0.09735576923076923, 0.09495192307692307, 0.09375, 0.0889423076923077, 0.09014423076923077, 0.09495192307692307, 0.41225961538461536, 0.39783653846153844, 0.7103365384615384, 0.7944711538461539, 0.8161057692307693, 0.8293269230769231, 0.9399038461538461, 0.9435096153846154, 0.9459134615384616, 0.9447115384615384, 0.9411057692307693, 0.8377403846153846, 0.8269230769230769, 0.8040865384615384, 0.7584134615384616, 0.5036057692307693, 0.2848557692307692, 0.13341346153846154, 0.0673076923076923, 0.04326923076923077, 0.03365384615384615, 0.03125, 0.027644230769230768, 0.028846153846153848, 0.020432692307692308, 0.020432692307692308, 0.020432692307692308, 0.018028846153846152, 0.018028846153846152, 0.027644230769230768, 0.016826923076923076, 0.015625, 0.016826923076923076, 0.018028846153846152, 0.018028846153846152, 0.018028846153846152, 0.018028846153846152, 0.018028846153846152, 0.6971153846153846, 0.42427884615384615, 0.17307692307692307, 0.019230769230769232, 0.015625, 0.016826923076923076, 0.015625, 0.020432692307692308, 0.028846153846153848, 0.015625, 0.010817307692307692, 0.009615384615384616, 0.013221153846153846, 0.014423076923076924, 0.013221153846153846, 0.013221153846153846, 0.01201923076923077, 0.013221153846153846, 0.038461538461538464, 0.04447115384615385, 0.1201923076923077, 0.140625, 0.13221153846153846, 0.3125, 0.8497596153846154, 0.8858173076923077, 0.9387019230769231, 0.8978365384615384, 0.859375, 0.7896634615384616, 0.06850961538461539, 0.054086538461538464, 0.040865384615384616, 0.03125, 0.036057692307692304, 0.038461538461538464, 0.039663461538461536, 0.038461538461538464, 0.039663461538461536, 0.042067307692307696, 0.17067307692307693, 0.8653846153846154, 0.8677884615384616, 0.9002403846153846, 0.8822115384615384, 0.8665865384615384, 0.859375, 0.03485576923076923, 0.057692307692307696, 0.042067307692307696, 0.04326923076923077, 0.038461538461538464, 0.042067307692307696, 0.04567307692307692, 0.054086538461538464, 0.9254807692307693, 0.055288461538461536, 0.056490384615384616, 0.08653846153846154, 0.07692307692307693, 0.07932692307692307, 0.09134615384615384, 0.7608173076923077, 0.9146634615384616, 0.9423076923076923, 0.8557692307692307, 0.7355769230769231, 0.12139423076923077, 0.11538461538461539, 0.109375, 0.11057692307692307, 0.11057692307692307, 0.11298076923076923, 0.12139423076923077, 0.125, 0.12980769230769232, 0.14182692307692307, 0.14783653846153846, 0.17067307692307693, 0.1935096153846154, 0.20673076923076922, 0.22716346153846154, 0.2548076923076923, 0.7956730769230769, 0.359375, 0.43028846153846156, 0.47115384615384615, 0.49759615384615385, 0.5300480769230769, 0.6382211538461539], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Rep-A_N.gap.json b/pfam_gap_rates/Rep-A_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e0c629797e629193f38a064159abec92053522b4
--- /dev/null
+++ b/pfam_gap_rates/Rep-A_N.gap.json
@@ -0,0 +1 @@
+{"family": "Rep-A_N", "n_seqs": 393, "length": 117, "gap_rates": [0.356234096692112, 0.30279898218829515, 0.272264631043257, 0.2544529262086514, 0.23918575063613232, 0.22900763358778625, 0.22900763358778625, 0.22900763358778625, 0.22900763358778625, 0.22646310432569974, 0.21882951653944022, 0.7633587786259542, 0.8371501272264631, 0.648854961832061, 0.49363867684478374, 0.24681933842239187, 0.2366412213740458, 0.23918575063613232, 0.2366412213740458, 0.1628498727735369, 0.72264631043257, 0.9185750636132316, 0.8015267175572519, 0.6463104325699746, 0.13231552162849872, 0.11704834605597965, 0.10941475826972011, 0.10432569974554708, 0.10432569974554708, 0.10178117048346055, 0.10178117048346055, 0.09923664122137404, 0.09414758269720101, 0.0916030534351145, 0.0916030534351145, 0.15012722646310434, 0.1475826972010178, 0.17048346055979643, 0.6030534351145038, 0.8295165394402035, 0.9287531806615776, 0.8982188295165394, 0.7531806615776081, 0.39185750636132316, 0.28498727735368956, 0.20865139949109415, 0.12213740458015267, 0.10687022900763359, 0.09414758269720101, 0.06870229007633588, 0.06615776081424936, 0.061068702290076333, 0.061068702290076333, 0.05597964376590331, 0.05089058524173028, 0.05089058524173028, 0.05089058524173028, 0.05089058524173028, 0.05343511450381679, 0.05343511450381679, 0.05343511450381679, 0.8931297709923665, 0.05089058524173028, 0.04580152671755725, 0.03816793893129771, 0.9083969465648855, 0.010178117048346057, 0.010178117048346057, 0.010178117048346057, 0.010178117048346057, 0.005089058524173028, 0.007633587786259542, 0.005089058524173028, 0.007633587786259542, 0.015267175572519083, 0.015267175572519083, 0.017811704834605598, 0.022900763358778626, 0.015267175572519083, 0.005089058524173028, 0.007633587786259542, 0.007633587786259542, 0.007633587786259542, 0.005089058524173028, 0.005089058524173028, 0.005089058524173028, 0.005089058524173028, 0.005089058524173028, 0.005089058524173028, 0.005089058524173028, 0.017811704834605598, 0.015267175572519083, 0.015267175572519083, 0.020356234096692113, 0.035623409669211195, 0.04580152671755725, 0.05343511450381679, 0.05343511450381679, 0.6513994910941476, 0.9083969465648855, 0.9236641221374046, 0.8091603053435115, 0.09923664122137404, 0.06361323155216285, 0.07633587786259542, 0.08396946564885496, 0.089058524173028, 0.0916030534351145, 0.10178117048346055, 0.10687022900763359, 0.11959287531806616, 0.1297709923664122, 0.14249363867684478, 0.16539440203562342, 0.22137404580152673, 0.42748091603053434, 0.9338422391857506], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/RepA_N.gap.json b/pfam_gap_rates/RepA_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..9210dfe0f5e68e60ef4fc59a7c36dd3e29919153
--- /dev/null
+++ b/pfam_gap_rates/RepA_N.gap.json
@@ -0,0 +1 @@
+{"family": "RepA_N", "n_seqs": 257, "length": 75, "gap_rates": [0.2840466926070039, 0.11284046692607004, 0.07392996108949416, 0.07003891050583658, 0.05058365758754864, 0.05058365758754864, 0.05058365758754864, 0.05058365758754864, 0.05058365758754864, 0.05058365758754864, 0.042801556420233464, 0.25680933852140075, 0.23735408560311283, 0.24124513618677043, 0.24124513618677043, 0.042801556420233464, 0.0311284046692607, 0.027237354085603113, 0.023346303501945526, 0.019455252918287938, 0.01556420233463035, 0.01556420233463035, 0.01556420233463035, 0.01556420233463035, 0.01556420233463035, 0.01556420233463035, 0.011673151750972763, 0.011673151750972763, 0.0038910505836575876, 0.0038910505836575876, 0.0038910505836575876, 0.0038910505836575876, 0.0038910505836575876, 0.0038910505836575876, 0.0038910505836575876, 0.0038910505836575876, 0.0, 0.0, 0.0, 0.007782101167315175, 0.011673151750972763, 0.011673151750972763, 0.007782101167315175, 0.007782101167315175, 0.007782101167315175, 0.007782101167315175, 0.007782101167315175, 0.011673151750972763, 0.007782101167315175, 0.007782101167315175, 0.007782101167315175, 0.007782101167315175, 0.007782101167315175, 0.011673151750972763, 0.011673151750972763, 0.011673151750972763, 0.011673151750972763, 0.011673151750972763, 0.01556420233463035, 0.01556420233463035, 0.01556420233463035, 0.019455252918287938, 0.019455252918287938, 0.019455252918287938, 0.019455252918287938, 0.027237354085603113, 0.027237354085603113, 0.027237354085603113, 0.0311284046692607, 0.0311284046692607, 0.03501945525291829, 0.038910505836575876, 0.042801556420233464, 0.054474708171206226, 0.10505836575875487], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Rep_3.gap.json b/pfam_gap_rates/Rep_3.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d6c650a94d3da80a61c9eced74339ab476a9afd8
--- /dev/null
+++ b/pfam_gap_rates/Rep_3.gap.json
@@ -0,0 +1 @@
+{"family": "Rep_3", "n_seqs": 394, "length": 287, "gap_rates": [0.934010152284264, 0.700507614213198, 0.5482233502538071, 0.44923857868020306, 0.41624365482233505, 0.383248730964467, 0.3680203045685279, 0.35786802030456855, 0.3477157360406091, 0.3299492385786802, 0.3147208121827411, 0.28426395939086296, 0.26903553299492383, 0.25380710659898476, 0.24873096446700507, 0.26649746192893403, 0.19543147208121828, 0.9263959390862944, 0.7563451776649747, 0.16751269035532995, 0.15228426395939088, 0.14974619289340102, 0.14720812182741116, 0.14720812182741116, 0.1446700507614213, 0.13959390862944163, 0.13705583756345177, 0.13705583756345177, 0.13705583756345177, 0.13705583756345177, 0.13451776649746192, 0.13451776649746192, 0.1319796954314721, 0.1319796954314721, 0.12944162436548223, 0.12690355329949238, 0.12436548223350254, 0.12690355329949238, 0.9137055837563451, 0.949238578680203, 0.8629441624365483, 0.12690355329949238, 0.17258883248730963, 0.17766497461928935, 0.19543147208121828, 0.24873096446700507, 0.2868020304568528, 0.8096446700507615, 0.8730964467005076, 0.9238578680203046, 0.9441624365482234, 0.9390862944162437, 0.9086294416243654, 0.8401015228426396, 0.7766497461928934, 0.2436548223350254, 0.20812182741116753, 0.19543147208121828, 0.11421319796954314, 0.10913705583756345, 0.1116751269035533, 0.1116751269035533, 0.1218274111675127, 0.1218274111675127, 0.5101522842639594, 0.22588832487309646, 0.2182741116751269, 0.5862944162436549, 0.9238578680203046, 0.949238578680203, 0.9010152284263959, 0.13959390862944163, 0.116751269035533, 0.10406091370558376, 0.09898477157360407, 0.10913705583756345, 0.13959390862944163, 0.9467005076142132, 0.434010152284264, 0.8045685279187818, 0.08629441624365482, 0.07868020304568528, 0.07360406091370558, 0.07106598984771574, 0.07106598984771574, 0.07106598984771574, 0.07106598984771574, 0.07106598984771574, 0.06598984771573604, 0.06598984771573604, 0.06598984771573604, 0.07106598984771574, 0.9441624365482234, 0.06598984771573604, 0.06598984771573604, 0.06852791878172589, 0.9289340101522843, 0.06852791878172589, 0.07106598984771574, 0.07360406091370558, 0.6776649746192893, 0.8096446700507615, 0.9289340101522843, 0.8959390862944162, 0.7106598984771574, 0.5228426395939086, 0.44416243654822335, 0.37817258883248733, 0.30710659898477155, 0.23096446700507614, 0.13959390862944163, 0.1065989847715736, 0.09644670050761421, 0.09644670050761421, 0.8324873096446701, 0.07868020304568528, 0.07868020304568528, 0.07614213197969544, 0.07614213197969544, 0.07614213197969544, 0.07614213197969544, 0.06598984771573604, 0.06345177664974619, 0.06598984771573604, 0.3197969543147208, 0.46954314720812185, 0.4796954314720812, 0.5050761421319797, 0.44416243654822335, 0.3680203045685279, 0.2563451776649746, 0.6218274111675127, 0.9111675126903553, 0.9467005076142132, 0.8756345177664975, 0.5126903553299492, 0.1802030456852792, 0.15228426395939088, 0.0583756345177665, 0.0583756345177665, 0.0532994923857868, 0.050761421319796954, 0.050761421319796954, 0.06345177664974619, 0.0532994923857868, 0.0532994923857868, 0.0532994923857868, 0.0532994923857868, 0.06091370558375635, 0.0583756345177665, 0.05583756345177665, 0.0583756345177665, 0.050761421319796954, 0.048223350253807105, 0.050761421319796954, 0.050761421319796954, 0.050761421319796954, 0.050761421319796954, 0.45685279187817257, 0.06852791878172589, 0.0532994923857868, 0.050761421319796954, 0.0532994923857868, 0.0532994923857868, 0.050761421319796954, 0.048223350253807105, 0.04568527918781726, 0.04568527918781726, 0.04568527918781726, 0.050761421319796954, 0.04568527918781726, 0.048223350253807105, 0.048223350253807105, 0.04314720812182741, 0.04314720812182741, 0.04314720812182741, 0.04314720812182741, 0.04314720812182741, 0.04060913705583756, 0.04314720812182741, 0.04314720812182741, 0.04314720812182741, 0.04314720812182741, 0.9263959390862944, 0.9060913705583756, 0.0583756345177665, 0.06598984771573604, 0.048223350253807105, 0.7893401015228426, 0.8629441624365483, 0.8934010152284264, 0.9263959390862944, 0.9365482233502538, 0.9441624365482234, 0.9314720812182741, 0.916243654822335, 0.8908629441624365, 0.817258883248731, 0.7309644670050761, 0.05583756345177665, 0.07360406091370558, 0.06852791878172589, 0.0583756345177665, 0.0583756345177665, 0.9467005076142132, 0.817258883248731, 0.0583756345177665, 0.0532994923857868, 0.0532994923857868, 0.0532994923857868, 0.05583756345177665, 0.0532994923857868, 0.05583756345177665, 0.05583756345177665, 0.05583756345177665, 0.05583756345177665, 0.05583756345177665, 0.05583756345177665, 0.05583756345177665, 0.06852791878172589, 0.07106598984771574, 0.8578680203045685, 0.8934010152284264, 0.9060913705583756, 0.9390862944162437, 0.949238578680203, 0.9467005076142132, 0.9365482233502538, 0.9010152284263959, 0.8781725888324873, 0.7944162436548223, 0.3604060913705584, 0.06852791878172589, 0.06091370558375635, 0.13959390862944163, 0.13959390862944163, 0.05583756345177665, 0.06852791878172589, 0.06091370558375635, 0.0532994923857868, 0.05583756345177665, 0.05583756345177665, 0.05583756345177665, 0.050761421319796954, 0.05583756345177665, 0.05583756345177665, 0.0532994923857868, 0.0532994923857868, 0.0532994923857868, 0.0532994923857868, 0.0532994923857868, 0.0532994923857868, 0.05583756345177665, 0.14720812182741116, 0.1446700507614213, 0.9441624365482234, 0.9314720812182741, 0.06852791878172589, 0.06852791878172589, 0.06345177664974619, 0.06091370558375635, 0.8350253807106599, 0.06091370558375635, 0.06091370558375635, 0.06598984771573604, 0.06598984771573604, 0.06598984771573604, 0.06598984771573604, 0.06598984771573604, 0.8553299492385786, 0.07106598984771574, 0.7969543147208121, 0.9467005076142132, 0.8984771573604061, 0.7715736040609137, 0.07868020304568528, 0.07868020304568528, 0.09137055837563451, 0.09898477157360407, 0.1116751269035533, 0.11421319796954314, 0.116751269035533, 0.116751269035533, 0.12436548223350254, 0.13959390862944163, 0.20558375634517767, 0.4949238578680203], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Retrotran_gag_2.gap.json b/pfam_gap_rates/Retrotran_gag_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..5b3025defdcefff182927812e8cf6fc36e04d911
--- /dev/null
+++ b/pfam_gap_rates/Retrotran_gag_2.gap.json
@@ -0,0 +1 @@
+{"family": "Retrotran_gag_2", "n_seqs": 2921, "length": 149, "gap_rates": [0.6925710373159877, 0.5932899691886341, 0.4659363231769942, 0.40842177336528585, 0.3793221499486477, 0.3611776788770969, 0.34440260184868193, 0.33036631290653884, 0.3207805546045875, 0.312221841834988, 0.3033207805546046, 0.2978432043820609, 0.2957891133173571, 0.29168093118794935, 0.2687435809654228, 0.25984251968503935, 0.2543649435124957, 0.25265320095857585, 0.250256761383088, 0.2471756247860322, 0.2420403971242725, 0.2314275932899692, 0.22115713796644984, 0.218760698390962, 0.20985963711057856, 0.9421431016775077, 0.9438548442314276, 0.8781239301609038, 0.19274221157137966, 0.187264635398836, 0.1766518315645327, 0.16672372475179734, 0.1626155426223896, 0.15645326942827797, 0.15371448134200616, 0.13865114686751112, 0.13830879835672716, 0.1342006162273194, 0.13317357069496746, 0.1311194796302636, 0.13009243409791169, 0.12769599452242383, 0.12564190345771997, 0.12221841834988018, 0.12153372132831222, 0.12221841834988018, 0.12153372132831222, 0.11982197877439234, 0.12598425196850394, 0.12084902430674427, 0.11776788770968846, 0.11605614515576858, 0.11639849366655255, 0.905169462512838, 0.9079082505991098, 0.8859979459089353, 0.1109209174940089, 0.10749743238616911, 0.10818212940773708, 0.1061280383430332, 0.1061280383430332, 0.10544334132146525, 0.1126326600479288, 0.11023622047244094, 0.10886682642930504, 0.11126326600479287, 0.10030811365970559, 0.09962341663813762, 0.11742553919890449, 0.11365970558028073, 0.2951044162957891, 0.10647038685381718, 0.09380349195481, 0.09414584046559397, 0.09414584046559397, 0.09380349195481, 0.09483053748716193, 0.09551523450872988, 0.09380349195481, 0.09277644642245807, 0.09346114344402602, 0.09277644642245807, 0.09311879493324204, 0.09722697706264978, 0.09928106812735364, 0.10030811365970559, 0.09791167408421773, 0.09962341663813762, 0.10236220472440945, 0.1061280383430332, 0.11811023622047244, 0.12153372132831222, 0.9079082505991098, 0.9479630263608353, 0.9315302978432044, 0.8794933242040397, 0.13180417665183156, 0.13009243409791169, 0.13214652516261555, 0.13625470729202327, 0.14002054091064703, 0.14173228346456693, 0.1454981170831907, 0.14652516261554263, 0.1516603902773023, 0.15371448134200616, 0.15645326942827797, 0.15953440602533378, 0.1626155426223896, 0.16672372475179734, 0.17083190688120506, 0.1735706949674769, 0.17528243752139677, 0.17904827114002053, 0.18794933242040396, 0.1903457719958918, 0.19308456008216365, 0.19616569667921946, 0.20095857583019514, 0.20575145498117084, 0.21054433413214652, 0.21636425881547416, 0.2235535775419377, 0.2262923656282095, 0.6549127011297501, 0.671687778158165, 0.484080794248545, 0.265662444368367, 0.2622389592605272, 0.26121191372817526, 0.26326600479287915, 0.26600479287915096, 0.2701129750085587, 0.2718247175624786, 0.27867168777815815, 0.2824375213967819, 0.2858610065046217, 0.2906538856555974, 0.29407737076343715, 0.3064019171516604, 0.31804176651831567, 0.3348168435467306, 0.3700787401574803, 0.40191715166039027, 0.4344402601848682, 0.47175624786032183, 0.5491270112975009, 0.6579938377268059, 0.8144471071550838], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/RhaT.gap.json b/pfam_gap_rates/RhaT.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..1c086b8a05bc8b3837dc95043d89565540ca3e4a
--- /dev/null
+++ b/pfam_gap_rates/RhaT.gap.json
@@ -0,0 +1 @@
+{"family": "RhaT", "n_seqs": 120, "length": 388, "gap_rates": [0.925, 0.9083333333333333, 0.9, 0.8583333333333333, 0.6333333333333333, 0.2916666666666667, 0.2, 0.19166666666666668, 0.18333333333333332, 0.175, 0.16666666666666666, 0.15833333333333333, 0.15833333333333333, 0.15833333333333333, 0.15833333333333333, 0.15833333333333333, 0.15833333333333333, 0.16666666666666666, 0.15833333333333333, 0.15, 0.13333333333333333, 0.11666666666666667, 0.11666666666666667, 0.11666666666666667, 0.10833333333333334, 0.10833333333333334, 0.10833333333333334, 0.10833333333333334, 0.10833333333333334, 0.09166666666666666, 0.08333333333333333, 0.08333333333333333, 0.08333333333333333, 0.08333333333333333, 0.08333333333333333, 0.08333333333333333, 0.08333333333333333, 0.08333333333333333, 0.08333333333333333, 0.08333333333333333, 0.08333333333333333, 0.08333333333333333, 0.08333333333333333, 0.08333333333333333, 0.08333333333333333, 0.08333333333333333, 0.08333333333333333, 0.08333333333333333, 0.08333333333333333, 0.08333333333333333, 0.08333333333333333, 0.08333333333333333, 0.08333333333333333, 0.08333333333333333, 0.075, 0.075, 0.075, 0.075, 0.075, 0.075, 0.075, 0.075, 0.075, 0.075, 0.075, 0.075, 0.075, 0.09166666666666666, 0.09166666666666666, 0.1, 0.09166666666666666, 0.075, 0.075, 0.075, 0.075, 0.08333333333333333, 0.075, 0.1, 0.075, 0.075, 0.075, 0.075, 0.075, 0.075, 0.075, 0.075, 0.075, 0.075, 0.075, 0.075, 0.075, 0.075, 0.075, 0.075, 0.075, 0.075, 0.075, 0.075, 0.075, 0.075, 0.075, 0.075, 0.075, 0.075, 0.075, 0.075, 0.075, 0.075, 0.075, 0.075, 0.075, 0.075, 0.075, 0.075, 0.075, 0.09166666666666666, 0.08333333333333333, 0.125, 0.075, 0.075, 0.075, 0.8666666666666667, 0.8666666666666667, 0.8666666666666667, 0.9166666666666666, 0.9166666666666666, 0.8666666666666667, 0.8666666666666667, 0.85, 0.09166666666666666, 0.11666666666666667, 0.14166666666666666, 0.9333333333333333, 0.9333333333333333, 0.175, 0.95, 0.16666666666666666, 0.2, 0.95, 0.175, 0.125, 0.13333333333333333, 0.10833333333333334, 0.09166666666666666, 0.11666666666666667, 0.10833333333333334, 0.09166666666666666, 0.08333333333333333, 0.075, 0.075, 0.075, 0.075, 0.075, 0.075, 0.075, 0.075, 0.075, 0.08333333333333333, 0.08333333333333333, 0.08333333333333333, 0.08333333333333333, 0.08333333333333333, 0.08333333333333333, 0.08333333333333333, 0.075, 0.075, 0.075, 0.075, 0.075, 0.075, 0.075, 0.08333333333333333, 0.08333333333333333, 0.1, 0.9333333333333333, 0.9416666666666667, 0.925, 0.10833333333333334, 0.7833333333333333, 0.825, 0.825, 0.825, 0.7666666666666667, 0.11666666666666667, 0.9333333333333333, 0.9166666666666666, 0.10833333333333334, 0.8333333333333334, 0.8583333333333333, 0.8666666666666667, 0.8416666666666667, 0.8166666666666667, 0.10833333333333334, 0.9, 0.9166666666666666, 0.9416666666666667, 0.9166666666666666, 0.8916666666666667, 0.10833333333333334, 0.875, 0.925, 0.8833333333333333, 0.8666666666666667, 0.10833333333333334, 0.11666666666666667, 0.11666666666666667, 0.10833333333333334, 0.10833333333333334, 0.1, 0.1, 0.1, 0.1, 0.1, 0.1, 0.1, 0.1, 0.10833333333333334, 0.10833333333333334, 0.10833333333333334, 0.10833333333333334, 0.10833333333333334, 0.10833333333333334, 0.10833333333333334, 0.10833333333333334, 0.10833333333333334, 0.10833333333333334, 0.10833333333333334, 0.10833333333333334, 0.10833333333333334, 0.10833333333333334, 0.10833333333333334, 0.10833333333333334, 0.11666666666666667, 0.11666666666666667, 0.11666666666666667, 0.11666666666666667, 0.10833333333333334, 0.10833333333333334, 0.125, 0.15, 0.175, 0.925, 0.9333333333333333, 0.9333333333333333, 0.9333333333333333, 0.9333333333333333, 0.9083333333333333, 0.19166666666666668, 0.15833333333333333, 0.14166666666666666, 0.10833333333333334, 0.11666666666666667, 0.10833333333333334, 0.10833333333333334, 0.125, 0.11666666666666667, 0.13333333333333333, 0.125, 0.125, 0.125, 0.125, 0.10833333333333334, 0.1, 0.1, 0.1, 0.1, 0.1, 0.1, 0.1, 0.1, 0.1, 0.10833333333333334, 0.10833333333333334, 0.11666666666666667, 0.10833333333333334, 0.10833333333333334, 0.21666666666666667, 0.2916666666666667, 0.20833333333333334, 0.18333333333333332, 0.2, 0.19166666666666668, 0.19166666666666668, 0.225, 0.325, 0.39166666666666666, 0.38333333333333336, 0.25833333333333336, 0.175, 0.16666666666666666, 0.15833333333333333, 0.20833333333333334, 0.15833333333333333, 0.14166666666666666, 0.14166666666666666, 0.14166666666666666, 0.14166666666666666, 0.14166666666666666, 0.13333333333333333, 0.11666666666666667, 0.1, 0.1, 0.09166666666666666, 0.10833333333333334, 0.10833333333333334, 0.10833333333333334, 0.09166666666666666, 0.09166666666666666, 0.09166666666666666, 0.09166666666666666, 0.1, 0.1, 0.1, 0.1, 0.1, 0.09166666666666666, 0.09166666666666666, 0.09166666666666666, 0.09166666666666666, 0.09166666666666666, 0.09166666666666666, 0.09166666666666666, 0.09166666666666666, 0.09166666666666666, 0.09166666666666666, 0.10833333333333334, 0.2916666666666667, 0.14166666666666666, 0.875, 0.875, 0.2833333333333333, 0.2833333333333333, 0.09166666666666666, 0.09166666666666666, 0.09166666666666666, 0.09166666666666666, 0.09166666666666666, 0.09166666666666666, 0.09166666666666666, 0.09166666666666666, 0.09166666666666666, 0.09166666666666666, 0.09166666666666666, 0.09166666666666666, 0.09166666666666666, 0.09166666666666666, 0.09166666666666666, 0.09166666666666666, 0.09166666666666666, 0.09166666666666666, 0.09166666666666666, 0.09166666666666666, 0.09166666666666666, 0.09166666666666666, 0.09166666666666666, 0.09166666666666666, 0.09166666666666666, 0.09166666666666666, 0.09166666666666666, 0.1, 0.11666666666666667, 0.1, 0.09166666666666666, 0.1, 0.1, 0.09166666666666666, 0.09166666666666666, 0.09166666666666666, 0.09166666666666666, 0.09166666666666666, 0.09166666666666666, 0.1, 0.1, 0.1, 0.11666666666666667, 0.11666666666666667, 0.11666666666666667, 0.13333333333333333, 0.2, 0.2916666666666667, 0.3, 0.31666666666666665, 0.35, 0.38333333333333336, 0.4583333333333333, 0.85, 0.875, 0.95], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Rib_5-P_isom_A.gap.json b/pfam_gap_rates/Rib_5-P_isom_A.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..da616194f0af3b7535d733a4708c8129f6648a4c
--- /dev/null
+++ b/pfam_gap_rates/Rib_5-P_isom_A.gap.json
@@ -0,0 +1 @@
+{"family": "Rib_5-P_isom_A", "n_seqs": 1327, "length": 191, "gap_rates": [0.8711379050489827, 0.07309721175584025, 0.06028636021100226, 0.05275056518462698, 0.05199698568198945, 0.05124340617935192, 0.05124340617935192, 0.04973624717407687, 0.048982667671439335, 0.04672192916352675, 0.0452147701582517, 0.044461190655614165, 0.04370761115297664, 0.04295403165033911, 0.04144687264506405, 0.04144687264506405, 0.04069329314242653, 0.04069329314242653, 0.04144687264506405, 0.039939713639788994, 0.039939713639788994, 0.039939713639788994, 0.03918613413715147, 0.03918613413715147, 0.03843255463451394, 0.03617181612660136, 0.07234363225320271, 0.9404672192916352, 0.9427279577995479, 0.9291635267520724, 0.037678975131876416, 0.03617181612660136, 0.03391107761868877, 0.03391107761868877, 0.03391107761868877, 0.03391107761868877, 0.0346646571213263, 0.0346646571213263, 0.0346646571213263, 0.0346646571213263, 0.03391107761868877, 0.03240391861341371, 0.031650339110776186, 0.03240391861341371, 0.03692539562923888, 0.03089675960813866, 0.03089675960813866, 0.0293896006028636, 0.0293896006028636, 0.0293896006028636, 0.0293896006028636, 0.03014318010550113, 0.03014318010550113, 0.0293896006028636, 0.03014318010550113, 0.03089675960813866, 0.03089675960813866, 0.03089675960813866, 0.03089675960813866, 0.031650339110776186, 0.031650339110776186, 0.03014318010550113, 0.0293896006028636, 0.028636021100226075, 0.028636021100226075, 0.0293896006028636, 0.027882441597588545, 0.027882441597588545, 0.02637528259231349, 0.02637528259231349, 0.02562170308967596, 0.02562170308967596, 0.02637528259231349, 0.02637528259231349, 0.02562170308967596, 0.02637528259231349, 0.02562170308967596, 0.024868123587038434, 0.024868123587038434, 0.02637528259231349, 0.02637528259231349, 0.027128862094951016, 0.027882441597588545, 0.60060286360211, 0.07987942727957799, 0.8688771665410701, 0.7558402411454408, 0.023360964581763375, 0.023360964581763375, 0.023360964581763375, 0.023360964581763375, 0.024868123587038434, 0.02562170308967596, 0.02637528259231349, 0.02637528259231349, 0.027128862094951016, 0.02637528259231349, 0.02562170308967596, 0.024868123587038434, 0.024868123587038434, 0.024868123587038434, 0.024114544084400905, 0.024114544084400905, 0.024868123587038434, 0.024114544084400905, 0.02185380557648832, 0.02185380557648832, 0.05199698568198945, 0.4325546345139412, 0.8289374529012811, 0.908816880180859, 0.9171062547098718, 0.8311981914091937, 0.8003014318010551, 0.19894498869630747, 0.031650339110776186, 0.03089675960813866, 0.03089675960813866, 0.03014318010550113, 0.02637528259231349, 0.02562170308967596, 0.02562170308967596, 0.027882441597588545, 0.5553880934438583, 0.9389600602863603, 0.9495101733232856, 0.9464958553127355, 0.8553127354935945, 0.41823662396382816, 0.048982667671439335, 0.23360964581763377, 0.22682743029389602, 0.22456669178598343, 0.21778447626224567, 0.023360964581763375, 0.02260738507912585, 0.02260738507912585, 0.02260738507912585, 0.02260738507912585, 0.02260738507912585, 0.024114544084400905, 0.023360964581763375, 0.02260738507912585, 0.02260738507912585, 0.02260738507912585, 0.02260738507912585, 0.024114544084400905, 0.02260738507912585, 0.1974378296910324, 0.26525998492840996, 0.12132629992464206, 0.045968349660889224, 0.2162773172569706, 0.9359457422758101, 0.8990203466465713, 0.03918613413715147, 0.03240391861341371, 0.03391107761868877, 0.027128862094951016, 0.027128862094951016, 0.027128862094951016, 0.027128862094951016, 0.027128862094951016, 0.027128862094951016, 0.027128862094951016, 0.02562170308967596, 0.02562170308967596, 0.027128862094951016, 0.027128862094951016, 0.027882441597588545, 0.027882441597588545, 0.027882441597588545, 0.028636021100226075, 0.028636021100226075, 0.028636021100226075, 0.028636021100226075, 0.03014318010550113, 0.031650339110776186, 0.7950263752825923, 0.04822908816880181, 0.08741522230595328, 0.08364732479276564, 0.08741522230595328, 0.09269027882441598, 0.09570459683496609, 0.09570459683496609, 0.10700828937452901, 0.12057272042200452, 0.1785983421250942, 0.2690278824415976, 0.36096458176337604], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Ribonuc_P_40.gap.json b/pfam_gap_rates/Ribonuc_P_40.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e690e8c3336c458832f37f71ac26980e0929a21f
--- /dev/null
+++ b/pfam_gap_rates/Ribonuc_P_40.gap.json
@@ -0,0 +1 @@
+{"family": "Ribonuc_P_40", "n_seqs": 191, "length": 329, "gap_rates": [0.8638743455497382, 0.4869109947643979, 0.4083769633507853, 0.4083769633507853, 0.4083769633507853, 0.4031413612565445, 0.39267015706806285, 0.387434554973822, 0.38219895287958117, 0.38219895287958117, 0.387434554973822, 0.3769633507853403, 0.36649214659685864, 0.36649214659685864, 0.35602094240837695, 0.93717277486911, 0.3403141361256545, 0.3298429319371728, 0.3036649214659686, 0.3036649214659686, 0.28272251308900526, 0.2670157068062827, 0.27225130890052357, 0.5968586387434555, 0.2879581151832461, 0.2774869109947644, 0.2617801047120419, 0.2617801047120419, 0.25654450261780104, 0.24607329842931938, 0.24607329842931938, 0.2513089005235602, 0.25654450261780104, 0.24083769633507854, 0.23036649214659685, 0.225130890052356, 0.21465968586387435, 0.2094240837696335, 0.518324607329843, 0.193717277486911, 0.18324607329842932, 0.18324607329842932, 0.18848167539267016, 0.18324607329842932, 0.193717277486911, 0.193717277486911, 0.193717277486911, 0.193717277486911, 0.193717277486911, 0.193717277486911, 0.193717277486911, 0.19895287958115182, 0.19895287958115182, 0.193717277486911, 0.193717277486911, 0.193717277486911, 0.193717277486911, 0.193717277486911, 0.19895287958115182, 0.2094240837696335, 0.2198952879581152, 0.2094240837696335, 0.2198952879581152, 0.2198952879581152, 0.24083769633507854, 0.9476439790575916, 0.4397905759162304, 0.32460732984293195, 0.7068062827225131, 0.675392670157068, 0.27225130890052357, 0.23036649214659685, 0.2094240837696335, 0.19895287958115182, 0.20418848167539266, 0.20418848167539266, 0.19895287958115182, 0.19895287958115182, 0.20418848167539266, 0.20418848167539266, 0.19895287958115182, 0.2670157068062827, 0.2670157068062827, 0.23036649214659685, 0.2356020942408377, 0.2670157068062827, 0.2513089005235602, 0.2094240837696335, 0.2094240837696335, 0.20418848167539266, 0.20418848167539266, 0.9476439790575916, 0.19895287958115182, 0.19895287958115182, 0.21465968586387435, 0.21465968586387435, 0.2094240837696335, 0.2094240837696335, 0.2094240837696335, 0.2094240837696335, 0.2198952879581152, 0.20418848167539266, 0.21465968586387435, 0.2670157068062827, 0.2774869109947644, 0.93717277486911, 0.225130890052356, 0.225130890052356, 0.2198952879581152, 0.21465968586387435, 0.21465968586387435, 0.21465968586387435, 0.2198952879581152, 0.5026178010471204, 0.23036649214659685, 0.23036649214659685, 0.23036649214659685, 0.4293193717277487, 0.4293193717277487, 0.4083769633507853, 0.33507853403141363, 0.33507853403141363, 0.3403141361256545, 0.900523560209424, 0.9162303664921466, 0.8638743455497382, 0.41361256544502617, 0.4397905759162304, 0.45549738219895286, 0.5968586387434555, 0.5340314136125655, 0.4973821989528796, 0.39790575916230364, 0.28272251308900526, 0.2670157068062827, 0.2617801047120419, 0.2670157068062827, 0.5759162303664922, 0.5445026178010471, 0.4816753926701571, 0.7068062827225131, 0.387434554973822, 0.3507853403141361, 0.29842931937172773, 0.29842931937172773, 0.2617801047120419, 0.25654450261780104, 0.24083769633507854, 0.2356020942408377, 0.2617801047120419, 0.2513089005235602, 0.9057591623036649, 0.9214659685863874, 0.8795811518324608, 0.3507853403141361, 0.41361256544502617, 0.2879581151832461, 0.21465968586387435, 0.2094240837696335, 0.19895287958115182, 0.193717277486911, 0.193717277486911, 0.193717277486911, 0.18848167539267016, 0.18848167539267016, 0.193717277486911, 0.2670157068062827, 0.44502617801047123, 0.450261780104712, 0.8272251308900523, 0.8586387434554974, 0.8952879581151832, 0.9109947643979057, 0.9319371727748691, 0.9476439790575916, 0.9476439790575916, 0.9109947643979057, 0.9057591623036649, 0.8795811518324608, 0.8534031413612565, 0.774869109947644, 0.4397905759162304, 0.49214659685863876, 0.42408376963350786, 0.38219895287958117, 0.387434554973822, 0.39790575916230364, 0.3612565445026178, 0.4293193717277487, 0.3717277486910995, 0.36649214659685864, 0.4397905759162304, 0.6230366492146597, 0.39267015706806285, 0.2774869109947644, 0.2617801047120419, 0.24607329842931938, 0.2198952879581152, 0.18848167539267016, 0.17277486910994763, 0.17277486910994763, 0.17277486910994763, 0.17277486910994763, 0.17277486910994763, 0.17277486910994763, 0.17277486910994763, 0.17277486910994763, 0.17277486910994763, 0.17277486910994763, 0.17277486910994763, 0.17277486910994763, 0.2356020942408377, 0.2356020942408377, 0.19895287958115182, 0.19895287958115182, 0.2198952879581152, 0.21465968586387435, 0.9424083769633508, 0.9162303664921466, 0.33507853403141363, 0.4397905759162304, 0.3507853403141361, 0.3298429319371728, 0.20418848167539266, 0.20418848167539266, 0.19895287958115182, 0.19895287958115182, 0.193717277486911, 0.193717277486911, 0.193717277486911, 0.225130890052356, 0.225130890052356, 0.9319371727748691, 0.19895287958115182, 0.193717277486911, 0.24607329842931938, 0.23036649214659685, 0.19895287958115182, 0.39267015706806285, 0.2931937172774869, 0.2670157068062827, 0.2198952879581152, 0.7486910994764397, 0.9319371727748691, 0.9476439790575916, 0.9476439790575916, 0.8848167539267016, 0.6492146596858639, 0.19895287958115182, 0.19895287958115182, 0.19895287958115182, 0.193717277486911, 0.193717277486911, 0.193717277486911, 0.193717277486911, 0.18848167539267016, 0.18848167539267016, 0.18848167539267016, 0.193717277486911, 0.193717277486911, 0.193717277486911, 0.193717277486911, 0.19895287958115182, 0.19895287958115182, 0.193717277486911, 0.193717277486911, 0.18848167539267016, 0.18848167539267016, 0.193717277486911, 0.19895287958115182, 0.19895287958115182, 0.2094240837696335, 0.2094240837696335, 0.2198952879581152, 0.2356020942408377, 0.2513089005235602, 0.3403141361256545, 0.35602094240837695, 0.35602094240837695, 0.32460732984293195, 0.42408376963350786, 0.8481675392670157, 0.9109947643979057, 0.9214659685863874, 0.8952879581151832, 0.8010471204188482, 0.2670157068062827, 0.2513089005235602, 0.24607329842931938, 0.2513089005235602, 0.2513089005235602, 0.2513089005235602, 0.2513089005235602, 0.2513089005235602, 0.2513089005235602, 0.2617801047120419, 0.25654450261780104, 0.29842931937172773, 0.34554973821989526, 0.39790575916230364, 0.4083769633507853, 0.4607329842931937, 0.5026178010471204, 0.5235602094240838, 0.5445026178010471, 0.9424083769633508, 0.9476439790575916, 0.9476439790575916, 0.9319371727748691, 0.5706806282722513, 0.5916230366492147, 0.5916230366492147, 0.5968586387434555, 0.5968586387434555, 0.5968586387434555, 0.5968586387434555, 0.6020942408376964, 0.5706806282722513, 0.5706806282722513, 0.5706806282722513, 0.581151832460733, 0.5863874345549738, 0.5863874345549738, 0.5863874345549738, 0.5863874345549738, 0.5916230366492147, 0.6387434554973822, 0.6963350785340314, 0.8586387434554974], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Ribonucleas_3_3.gap.json b/pfam_gap_rates/Ribonucleas_3_3.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..4aceba4d44a0c27412dd67fa3601d64b61064ae8
--- /dev/null
+++ b/pfam_gap_rates/Ribonucleas_3_3.gap.json
@@ -0,0 +1 @@
+{"family": "Ribonucleas_3_3", "n_seqs": 2441, "length": 139, "gap_rates": [0.6444080294961082, 0.36911102007374025, 0.1753379762392462, 0.11183941007783695, 0.07496927488734126, 0.06349856616140925, 0.058992216304793114, 0.05776321179844326, 0.05694387546087669, 0.05694387546087669, 0.05612453912331012, 0.05612453912331012, 0.05571487095452683, 0.07210159770585825, 0.9180663662433429, 0.9463334698893896, 0.9127406800491602, 0.08562064727570667, 0.2261368291683736, 0.2154854567800082, 0.16755428103236378, 0.03727980335927898, 0.4723473986071282, 0.680049160180254, 0.9426464563703401, 0.5960671855796804, 0.4362965997541991, 0.014748054076198279, 0.010651372388365424, 0.009012699713232281, 0.009012699713232281, 0.009012699713232281, 0.009012699713232281, 0.009012699713232281, 0.009012699713232281, 0.008603031544448997, 0.00819336337566571, 0.00819336337566571, 0.00819336337566571, 0.0077836952068824255, 0.007374027038099139, 0.006964358869315854, 0.006554690700532569, 0.006964358869315854, 0.006964358869315854, 0.0061450225317492835, 0.005735354362965997, 0.0061450225317492835, 0.005735354362965997, 0.9270790659565752, 0.005325686194182712, 0.005735354362965997, 0.005735354362965997, 0.7169192953707497, 0.005735354362965997, 0.027857435477263416, 0.025399426464563703, 0.4514543219991807, 0.025399426464563703, 0.024580090126997134, 0.024580090126997134, 0.0061450225317492835, 0.004916018025399427, 0.005325686194182712, 0.005325686194182712, 0.0061450225317492835, 0.006554690700532569, 0.011470708725931995, 0.0061450225317492835, 0.005735354362965997, 0.005735354362965997, 0.005735354362965997, 0.004506349856616141, 0.0032773453502662844, 0.0032773453502662844, 0.0032773453502662844, 0.0032773453502662844, 0.0032773453502662844, 0.0032773453502662844, 0.0036870135190495697, 0.0036870135190495697, 0.0032773453502662844, 0.0036870135190495697, 0.004506349856616141, 0.004506349856616141, 0.005735354362965997, 0.006964358869315854, 0.006964358869315854, 0.006554690700532569, 0.0061450225317492835, 0.006554690700532569, 0.9418271200327735, 0.039328144203195414, 0.04014748054076198, 0.11224907824662024, 0.0823433019254404, 0.06063088897992626, 0.04588283490372798, 0.035231462515362556, 0.02662843097091356, 0.020483408439164276, 0.021712412945514133, 0.022531749283080705, 0.017615731257681278, 0.014338385907414994, 0.01188037689471528, 0.011470708725931995, 0.010241704219582138, 0.010241704219582138, 0.010651372388365424, 0.010241704219582138, 0.010241704219582138, 0.010241704219582138, 0.010651372388365424, 0.01106104055714871, 0.01106104055714871, 0.011470708725931995, 0.01188037689471528, 0.01188037689471528, 0.012699713232281851, 0.013519049569848422, 0.014338385907414994, 0.018844735764031135, 0.02498975829578042, 0.032363785333879555, 0.039328144203195414, 0.05325686194182712, 0.05612453912331012, 0.058172879967226546, 0.0594018844735764, 0.06390823433019255, 0.06595657517410897, 0.07783695206882425, 0.12044244162228594, 0.30397378123719787, 0.3088897992625973, 0.48586644817697666, 0.6239246210569439, 0.8058172879967227], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Ribophorin_II.gap.json b/pfam_gap_rates/Ribophorin_II.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..3406978d3430555f421f1d63ffc24177ac43e074
--- /dev/null
+++ b/pfam_gap_rates/Ribophorin_II.gap.json
@@ -0,0 +1 @@
+{"family": "Ribophorin_II", "n_seqs": 318, "length": 699, "gap_rates": [0.8742138364779874, 0.7735849056603774, 0.7295597484276729, 0.7075471698113207, 0.6981132075471698, 0.6886792452830188, 0.6823899371069182, 0.6823899371069182, 0.6761006289308176, 0.6761006289308176, 0.6729559748427673, 0.6698113207547169, 0.6698113207547169, 0.6635220125786163, 0.6666666666666666, 0.6698113207547169, 0.6666666666666666, 0.6729559748427673, 0.6572327044025157, 0.9371069182389937, 0.9308176100628931, 0.6572327044025157, 0.6572327044025157, 0.6572327044025157, 0.6509433962264151, 0.6509433962264151, 0.6509433962264151, 0.6509433962264151, 0.6509433962264151, 0.6509433962264151, 0.6446540880503144, 0.6446540880503144, 0.6415094339622641, 0.6415094339622641, 0.6415094339622641, 0.9025157232704403, 0.7578616352201258, 0.7295597484276729, 0.6446540880503144, 0.6446540880503144, 0.6446540880503144, 0.6415094339622641, 0.6352201257861635, 0.6289308176100629, 0.6289308176100629, 0.6320754716981132, 0.6320754716981132, 0.6289308176100629, 0.6289308176100629, 0.6289308176100629, 0.6289308176100629, 0.6289308176100629, 0.6289308176100629, 0.6289308176100629, 0.6289308176100629, 0.6289308176100629, 0.6289308176100629, 0.6289308176100629, 0.6289308176100629, 0.6289308176100629, 0.8867924528301887, 0.889937106918239, 0.889937106918239, 0.8679245283018868, 0.6446540880503144, 0.6446540880503144, 0.6446540880503144, 0.6572327044025157, 0.6289308176100629, 0.8553459119496856, 0.839622641509434, 0.6257861635220126, 0.6320754716981132, 0.6289308176100629, 0.6257861635220126, 0.7232704402515723, 0.720125786163522, 0.720125786163522, 0.6477987421383647, 0.6289308176100629, 0.6289308176100629, 0.6446540880503144, 0.6477987421383647, 0.7861635220125787, 0.6886792452830188, 0.6572327044025157, 0.6226415094339622, 0.6226415094339622, 0.6194968553459119, 0.6194968553459119, 0.6194968553459119, 0.6194968553459119, 0.6194968553459119, 0.6194968553459119, 0.6194968553459119, 0.6194968553459119, 0.6226415094339622, 0.6194968553459119, 0.6226415094339622, 0.6194968553459119, 0.6194968553459119, 0.779874213836478, 0.6163522012578616, 0.6226415094339622, 0.6194968553459119, 0.6226415094339622, 0.6320754716981132, 0.8836477987421384, 0.8647798742138365, 0.7075471698113207, 0.6540880503144654, 0.6289308176100629, 0.6257861635220126, 0.6226415094339622, 0.6289308176100629, 0.6289308176100629, 0.6289308176100629, 0.6289308176100629, 0.6320754716981132, 0.6257861635220126, 0.6257861635220126, 0.8050314465408805, 0.6792452830188679, 0.6415094339622641, 0.6226415094339622, 0.6226415094339622, 0.6194968553459119, 0.6194968553459119, 0.6194968553459119, 0.6194968553459119, 0.6194968553459119, 0.6194968553459119, 0.6194968553459119, 0.6194968553459119, 0.6226415094339622, 0.6194968553459119, 0.6194968553459119, 0.6226415094339622, 0.6226415094339622, 0.6226415094339622, 0.6226415094339622, 0.6194968553459119, 0.6194968553459119, 0.6226415094339622, 0.6289308176100629, 0.6289308176100629, 0.6320754716981132, 0.6289308176100629, 0.839622641509434, 0.8805031446540881, 0.889937106918239, 0.9371069182389937, 0.9308176100628931, 0.8836477987421384, 0.8490566037735849, 0.8176100628930818, 0.6226415094339622, 0.6194968553459119, 0.6194968553459119, 0.6194968553459119, 0.6194968553459119, 0.6194968553459119, 0.6194968553459119, 0.6194968553459119, 0.6194968553459119, 0.6194968553459119, 0.6289308176100629, 0.6257861635220126, 0.6194968553459119, 0.8679245283018868, 0.8742138364779874, 0.8742138364779874, 0.8773584905660378, 0.8742138364779874, 0.8710691823899371, 0.8616352201257862, 0.6194968553459119, 0.6320754716981132, 0.6257861635220126, 0.6289308176100629, 0.6226415094339622, 0.6257861635220126, 0.6257861635220126, 0.6226415094339622, 0.6194968553459119, 0.6194968553459119, 0.6194968553459119, 0.6194968553459119, 0.6163522012578616, 0.8773584905660378, 0.8805031446540881, 0.8867924528301887, 0.889937106918239, 0.889937106918239, 0.889937106918239, 0.889937106918239, 0.889937106918239, 0.889937106918239, 0.8867924528301887, 0.8773584905660378, 0.8773584905660378, 0.6163522012578616, 0.6257861635220126, 0.6257861635220126, 0.6981132075471698, 0.6918238993710691, 0.6320754716981132, 0.6666666666666666, 0.8836477987421384, 0.8490566037735849, 0.6226415094339622, 0.6163522012578616, 0.610062893081761, 0.6069182389937107, 0.6069182389937107, 0.6069182389937107, 0.6069182389937107, 0.6069182389937107, 0.6069182389937107, 0.6069182389937107, 0.610062893081761, 0.610062893081761, 0.6069182389937107, 0.6069182389937107, 0.6037735849056604, 0.6037735849056604, 0.6069182389937107, 0.6069182389937107, 0.9056603773584906, 0.9056603773584906, 0.9056603773584906, 0.9056603773584906, 0.610062893081761, 0.60062893081761, 0.60062893081761, 0.6037735849056604, 0.6132075471698113, 0.6163522012578616, 0.89937106918239, 0.89937106918239, 0.889937106918239, 0.6069182389937107, 0.610062893081761, 0.6069182389937107, 0.6163522012578616, 0.6069182389937107, 0.6069182389937107, 0.610062893081761, 0.6132075471698113, 0.610062893081761, 0.610062893081761, 0.610062893081761, 0.610062893081761, 0.610062893081761, 0.6132075471698113, 0.610062893081761, 0.6069182389937107, 0.6069182389937107, 0.6069182389937107, 0.6069182389937107, 0.6069182389937107, 0.6069182389937107, 0.610062893081761, 0.6226415094339622, 0.6257861635220126, 0.6226415094339622, 0.6194968553459119, 0.6194968553459119, 0.6163522012578616, 0.6163522012578616, 0.6163522012578616, 0.610062893081761, 0.610062893081761, 0.610062893081761, 0.6132075471698113, 0.6132075471698113, 0.6132075471698113, 0.6132075471698113, 0.6132075471698113, 0.6132075471698113, 0.6132075471698113, 0.6132075471698113, 0.6132075471698113, 0.6132075471698113, 0.6132075471698113, 0.6132075471698113, 0.6194968553459119, 0.6163522012578616, 0.6163522012578616, 0.6163522012578616, 0.6163522012578616, 0.610062893081761, 0.6132075471698113, 0.6132075471698113, 0.6132075471698113, 0.6163522012578616, 0.6163522012578616, 0.6163522012578616, 0.6132075471698113, 0.6132075471698113, 0.6132075471698113, 0.6132075471698113, 0.6132075471698113, 0.6132075471698113, 0.610062893081761, 0.610062893081761, 0.6132075471698113, 0.6289308176100629, 0.6132075471698113, 0.6132075471698113, 0.610062893081761, 0.6132075471698113, 0.6069182389937107, 0.6069182389937107, 0.6194968553459119, 0.6163522012578616, 0.6132075471698113, 0.6132075471698113, 0.6132075471698113, 0.6132075471698113, 0.6163522012578616, 0.9433962264150944, 0.6194968553459119, 0.610062893081761, 0.6069182389937107, 0.610062893081761, 0.610062893081761, 0.6132075471698113, 0.6069182389937107, 0.6037735849056604, 0.6069182389937107, 0.6069182389937107, 0.60062893081761, 0.6037735849056604, 0.6037735849056604, 0.6037735849056604, 0.60062893081761, 0.5943396226415094, 0.5943396226415094, 0.5943396226415094, 0.5943396226415094, 0.5943396226415094, 0.5943396226415094, 0.5943396226415094, 0.8616352201257862, 0.6352201257861635, 0.60062893081761, 0.5974842767295597, 0.6037735849056604, 0.6037735849056604, 0.60062893081761, 0.6037735849056604, 0.6037735849056604, 0.610062893081761, 0.8930817610062893, 0.6194968553459119, 0.6132075471698113, 0.6194968553459119, 0.60062893081761, 0.60062893081761, 0.60062893081761, 0.5880503144654088, 0.5849056603773585, 0.5849056603773585, 0.5974842767295597, 0.5880503144654088, 0.5974842767295597, 0.5849056603773585, 0.5849056603773585, 0.5849056603773585, 0.5911949685534591, 0.6572327044025157, 0.6666666666666666, 0.6163522012578616, 0.60062893081761, 0.5943396226415094, 0.6069182389937107, 0.6132075471698113, 0.9182389937106918, 0.9245283018867925, 0.8238993710691824, 0.5880503144654088, 0.5880503144654088, 0.5880503144654088, 0.5880503144654088, 0.5817610062893082, 0.5880503144654088, 0.5817610062893082, 0.5817610062893082, 0.5817610062893082, 0.6069182389937107, 0.6226415094339622, 0.5911949685534591, 0.5849056603773585, 0.5849056603773585, 0.5817610062893082, 0.5817610062893082, 0.5817610062893082, 0.5817610062893082, 0.5817610062893082, 0.5817610062893082, 0.5817610062893082, 0.8144654088050315, 0.7987421383647799, 0.8773584905660378, 0.8647798742138365, 0.7232704402515723, 0.6572327044025157, 0.6446540880503144, 0.6446540880503144, 0.6446540880503144, 0.6352201257861635, 0.6352201257861635, 0.6194968553459119, 0.5723270440251572, 0.6289308176100629, 0.5786163522012578, 0.5817610062893082, 0.5754716981132075, 0.5723270440251572, 0.5660377358490566, 0.5566037735849056, 0.550314465408805, 0.5440251572327044, 0.5377358490566038, 0.5314465408805031, 0.5062893081761006, 0.49056603773584906, 0.48742138364779874, 0.4748427672955975, 0.46855345911949686, 0.46226415094339623, 0.4528301886792453, 0.44654088050314467, 0.42452830188679247, 0.41509433962264153, 0.4119496855345912, 0.41823899371069184, 0.41823899371069184, 0.41823899371069184, 0.42138364779874216, 0.42452830188679247, 0.42138364779874216, 0.4119496855345912, 0.42138364779874216, 0.4937106918238994, 0.9213836477987422, 0.4025157232704403, 0.39308176100628933, 0.3710691823899371, 0.36477987421383645, 0.36477987421383645, 0.36163522012578614, 0.3836477987421384, 0.36163522012578614, 0.34591194968553457, 0.34591194968553457, 0.3490566037735849, 0.3490566037735849, 0.36477987421383645, 0.34276729559748426, 0.3270440251572327, 0.3238993710691824, 0.3238993710691824, 0.31761006289308175, 0.31761006289308175, 0.31761006289308175, 0.3113207547169811, 0.29874213836477986, 0.29245283018867924, 0.3018867924528302, 0.29245283018867924, 0.22012578616352202, 0.2169811320754717, 0.21069182389937108, 0.21069182389937108, 0.2138364779874214, 0.2138364779874214, 0.2138364779874214, 0.24842767295597484, 0.48742138364779874, 0.29559748427672955, 0.24528301886792453, 0.24528301886792453, 0.24842767295597484, 0.2358490566037736, 0.2169811320754717, 0.2138364779874214, 0.21069182389937108, 0.20754716981132076, 0.20440251572327045, 0.20440251572327045, 0.20440251572327045, 0.20440251572327045, 0.20440251572327045, 0.20125786163522014, 0.20754716981132076, 0.4276729559748428, 0.22955974842767296, 0.20440251572327045, 0.20125786163522014, 0.20440251572327045, 0.20125786163522014, 0.20125786163522014, 0.20125786163522014, 0.20125786163522014, 0.20440251572327045, 0.20440251572327045, 0.20440251572327045, 0.20754716981132076, 0.20440251572327045, 0.20440251572327045, 0.3553459119496855, 0.9245283018867925, 0.22327044025157233, 0.21069182389937108, 0.20440251572327045, 0.20125786163522014, 0.20440251572327045, 0.20125786163522014, 0.1949685534591195, 0.20125786163522014, 0.19811320754716982, 0.9371069182389937, 0.1918238993710692, 0.18867924528301888, 0.18553459119496854, 0.18553459119496854, 0.18553459119496854, 0.19811320754716982, 0.1918238993710692, 0.1949685534591195, 0.18553459119496854, 0.22641509433962265, 0.18238993710691823, 0.1761006289308176, 0.17295597484276728, 0.17295597484276728, 0.1761006289308176, 0.16666666666666666, 0.16666666666666666, 0.16666666666666666, 0.16666666666666666, 0.16666666666666666, 0.1761006289308176, 0.1949685534591195, 0.1761006289308176, 0.17295597484276728, 0.18553459119496854, 0.16981132075471697, 0.22955974842767296, 0.16352201257861634, 0.16981132075471697, 0.17295597484276728, 0.16352201257861634, 0.16352201257861634, 0.16666666666666666, 0.17295597484276728, 0.1761006289308176, 0.1792452830188679, 0.18553459119496854, 0.18553459119496854, 0.20440251572327045, 0.20754716981132076, 0.18553459119496854, 0.17295597484276728, 0.17295597484276728, 0.16981132075471697, 0.17295597484276728, 0.31761006289308175, 0.27672955974842767, 0.22012578616352202, 0.4591194968553459, 0.34591194968553457, 0.29245283018867924, 0.7515723270440252, 0.7861635220125787, 0.9056603773584906, 0.9371069182389937, 0.9308176100628931, 0.7924528301886793, 0.7704402515723271, 0.6918238993710691, 0.16981132075471697, 0.16037735849056603, 0.15723270440251572, 0.14779874213836477, 0.14779874213836477, 0.14779874213836477, 0.14465408805031446, 0.16037735849056603, 0.1509433962264151, 0.1509433962264151, 0.13836477987421383, 0.13836477987421383, 0.13836477987421383, 0.13836477987421383, 0.13836477987421383, 0.14150943396226415, 0.13836477987421383, 0.13522012578616352, 0.13522012578616352, 0.13522012578616352, 0.13522012578616352, 0.13522012578616352, 0.13522012578616352, 0.13522012578616352, 0.13522012578616352, 0.13522012578616352, 0.13522012578616352, 0.13522012578616352, 0.13522012578616352, 0.13522012578616352, 0.13522012578616352, 0.14150943396226415, 0.14150943396226415, 0.14150943396226415, 0.14150943396226415, 0.14150943396226415, 0.14150943396226415, 0.14150943396226415, 0.14150943396226415, 0.14465408805031446, 0.1509433962264151, 0.1509433962264151, 0.16037735849056603, 0.16666666666666666, 0.16037735849056603, 0.16037735849056603, 0.16037735849056603, 0.15723270440251572, 0.16352201257861634, 0.16037735849056603, 0.16666666666666666, 0.16666666666666666, 0.16666666666666666, 0.16666666666666666, 0.1761006289308176, 0.2389937106918239, 0.1918238993710692, 0.16666666666666666, 0.559748427672956, 0.6289308176100629, 0.7830188679245284, 0.5817610062893082, 0.5283018867924528, 0.16037735849056603, 0.16666666666666666, 0.16352201257861634, 0.16037735849056603, 0.16037735849056603, 0.16037735849056603, 0.16037735849056603, 0.16666666666666666, 0.16352201257861634, 0.16352201257861634, 0.15723270440251572, 0.1540880503144654, 0.1540880503144654, 0.1540880503144654, 0.16037735849056603, 0.16037735849056603, 0.16037735849056603, 0.16037735849056603, 0.16037735849056603, 0.16037735849056603, 0.16037735849056603, 0.15723270440251572, 0.15723270440251572, 0.16352201257861634, 0.16037735849056603, 0.16352201257861634, 0.16352201257861634, 0.16352201257861634, 0.16666666666666666, 0.16666666666666666, 0.16666666666666666, 0.16666666666666666, 0.16981132075471697, 0.16981132075471697, 0.16981132075471697, 0.16981132075471697, 0.16981132075471697, 0.16981132075471697, 0.16981132075471697, 0.16981132075471697, 0.17295597484276728, 0.1792452830188679, 0.18238993710691823, 0.18238993710691823, 0.18553459119496854, 0.18553459119496854, 0.18553459119496854, 0.1918238993710692, 0.20754716981132076, 0.22955974842767296, 0.2830188679245283, 0.5440251572327044, 0.6540880503144654], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Ribosom_S30AE_C.gap.json b/pfam_gap_rates/Ribosom_S30AE_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..51d7dd94d54069accdf0bf7120c2cebf4b7a782e
--- /dev/null
+++ b/pfam_gap_rates/Ribosom_S30AE_C.gap.json
@@ -0,0 +1 @@
+{"family": "Ribosom_S30AE_C", "n_seqs": 1318, "length": 57, "gap_rates": [0.9203338391502276, 0.6820940819423369, 0.3520485584218513, 0.1646433990895296, 0.09028831562974203, 0.08042488619119878, 0.0417298937784522, 0.03490136570561457, 0.03338391502276176, 0.028072837632776935, 0.022003034901365705, 0.0204855842185129, 0.018209408194233688, 0.014415781487101669, 0.011380880121396054, 0.00834597875569044, 0.004552352048558422, 0.004552352048558422, 0.004552352048558422, 0.004552352048558422, 0.004552352048558422, 0.0037936267071320183, 0.0037936267071320183, 0.0037936267071320183, 0.0037936267071320183, 0.0015174506828528073, 0.0015174506828528073, 0.0030349013657056147, 0.0007587253414264037, 0.0007587253414264037, 0.0007587253414264037, 0.0007587253414264037, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.013657056145675266, 0.00834597875569044, 0.0007587253414264037, 0.0007587253414264037, 0.0015174506828528073, 0.002276176024279211, 0.002276176024279211, 0.0030349013657056147, 0.0037936267071320183, 0.007587253414264037, 0.011380880121396054, 0.011380880121396054, 0.014415781487101669, 0.018209408194233688, 0.021244309559939303, 0.03490136570561457, 0.19271623672230653], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Ribosomal_L18_c.gap.json b/pfam_gap_rates/Ribosomal_L18_c.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..fbcaf9095b1a7ad938ae57ef82eca99c67cdce70
--- /dev/null
+++ b/pfam_gap_rates/Ribosomal_L18_c.gap.json
@@ -0,0 +1 @@
+{"family": "Ribosomal_L18_c", "n_seqs": 500, "length": 106, "gap_rates": [0.322, 0.12, 0.108, 0.104, 0.082, 0.044, 0.036, 0.034, 0.028, 0.028, 0.028, 0.028, 0.03, 0.03, 0.028, 0.028, 0.016, 0.016, 0.014, 0.014, 0.014, 0.016, 0.024, 0.016, 0.018, 0.024, 0.022, 0.022, 0.018, 0.016, 0.02, 0.02, 0.022, 0.024, 0.022, 0.022, 0.022, 0.028, 0.024, 0.032, 0.034, 0.034, 0.03, 0.042, 0.03, 0.032, 0.038, 0.036, 0.04, 0.042, 0.042, 0.046, 0.048, 0.05, 0.052, 0.056, 0.066, 0.074, 0.1, 0.108, 0.108, 0.112, 0.686, 0.806, 0.87, 0.89, 0.824, 0.772, 0.518, 0.142, 0.872, 0.152, 0.132, 0.132, 0.128, 0.144, 0.146, 0.142, 0.146, 0.934, 0.946, 0.948, 0.944, 0.916, 0.23, 0.284, 0.23, 0.158, 0.16, 0.162, 0.166, 0.168, 0.17, 0.172, 0.172, 0.174, 0.176, 0.176, 0.178, 0.178, 0.18, 0.186, 0.198, 0.324, 0.366, 0.434], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Ribosomal_L27.gap.json b/pfam_gap_rates/Ribosomal_L27.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..15e76edc457304faa7732e5690861045cffe2de2
--- /dev/null
+++ b/pfam_gap_rates/Ribosomal_L27.gap.json
@@ -0,0 +1 @@
+{"family": "Ribosomal_L27", "n_seqs": 2527, "length": 83, "gap_rates": [0.09497427779976256, 0.04115552037989711, 0.03759398496240601, 0.03442817570241393, 0.0332409972299169, 0.032845271072417886, 0.03126236644242184, 0.02928373565492679, 0.02888800949742778, 0.02888800949742778, 0.0296794618124258, 0.026513652552433715, 0.024139295607439652, 0.024139295607439652, 0.02295211713494262, 0.021369212504946576, 0.02176493866244559, 0.022556390977443608, 0.020577760189948554, 0.01187178472497032, 0.01147605856747131, 0.009893153937475268, 0.009101701622477245, 0.009101701622477245, 0.007518796992481203, 0.007123070834982192, 0.007518796992481203, 0.007123070834982192, 0.007123070834982192, 0.007518796992481203, 0.007123070834982192, 0.006727344677483181, 0.007123070834982192, 0.007123070834982192, 0.007123070834982192, 0.006331618519984171, 0.00593589236248516, 0.00593589236248516, 0.00593589236248516, 0.00554016620498615, 0.006331618519984171, 0.00554016620498615, 0.00554016620498615, 0.004352987732489117, 0.004748713889988128, 0.004748713889988128, 0.004748713889988128, 0.004748713889988128, 0.004352987732489117, 0.004352987732489117, 0.003957261574990107, 0.0031658092599920855, 0.0031658092599920855, 0.002770083102493075, 0.002770083102493075, 0.002770083102493075, 0.0031658092599920855, 0.003561535417491096, 0.003561535417491096, 0.003561535417491096, 0.003561535417491096, 0.003957261574990107, 0.003957261574990107, 0.003957261574990107, 0.003957261574990107, 0.00554016620498615, 0.006727344677483181, 0.007914523149980214, 0.008705975464978234, 0.8286505738029284, 0.9366838148001583, 0.5809259992085477, 0.0221606648199446, 0.7214087851206965, 0.04115552037989711, 0.06608626830233479, 0.06371191135734072, 0.07914523149980214, 0.09774436090225563, 0.12346656113969133, 0.14681440443213298, 0.1768895924020578, 0.24020577760189948], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Ribosomal_L32p.gap.json b/pfam_gap_rates/Ribosomal_L32p.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..5e1d45f6a7b86a4a91ed2b1a58f5acd493cbad7a
--- /dev/null
+++ b/pfam_gap_rates/Ribosomal_L32p.gap.json
@@ -0,0 +1 @@
+{"family": "Ribosomal_L32p", "n_seqs": 2102, "length": 60, "gap_rates": [0.17649857278782113, 0.06422454804947669, 0.047573739295908656, 0.04519505233111323, 0.04471931493815414, 0.027117031398667935, 0.023786869647954328, 0.023311132254995242, 0.022835394862036156, 0.022835394862036156, 0.020456707897240724, 0.019980970504281638, 0.020456707897240724, 0.010941960038058992, 0.010466222645099905, 0.009039010466222646, 0.009039010466222646, 0.008563273073263558, 0.9381541389153187, 0.008087535680304472, 0.89581351094196, 0.006184586108468126, 0.005708848715509039, 0.004281636536631779, 0.004281636536631779, 0.005233111322549952, 0.8634633682207421, 0.008087535680304472, 0.008087535680304472, 0.039961941008563276, 0.037107516650808754, 0.03663177925784967, 0.03853472882968601, 0.05708848715509039, 0.011417697431018078, 0.011417697431018078, 0.9457659372026641, 0.011417697431018078, 0.011893434823977164, 0.012844909609895337, 0.012844909609895337, 0.014747859181731684, 0.014747859181731684, 0.016175071360608945, 0.019029495718363463, 0.038058991436726926, 0.04995242626070409, 0.05233111322549953, 0.26831588962892483, 0.1807802093244529, 0.1313035204567079, 0.13368220742150333, 0.14081826831588962, 0.15746907706945765, 0.16888677450047573, 0.19029495718363462, 0.21693625118934348, 0.2588011417697431, 0.38106565176022833, 0.8991436726926736], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Ribosomal_L37.gap.json b/pfam_gap_rates/Ribosomal_L37.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a411c2e0dbfab44045b41db4275f3aaff1da6958
--- /dev/null
+++ b/pfam_gap_rates/Ribosomal_L37.gap.json
@@ -0,0 +1 @@
+{"family": "Ribosomal_L37", "n_seqs": 287, "length": 143, "gap_rates": [0.7491289198606271, 0.5679442508710801, 0.45993031358885017, 0.4425087108013937, 0.4146341463414634, 0.397212543554007, 0.36585365853658536, 0.30313588850174217, 0.24041811846689895, 0.21602787456445993, 0.1289198606271777, 0.10104529616724739, 0.17421602787456447, 0.04878048780487805, 0.05226480836236934, 0.041811846689895474, 0.03832752613240418, 0.0313588850174216, 0.027874564459930314, 0.020905923344947737, 0.013937282229965157, 0.013937282229965157, 0.013937282229965157, 0.013937282229965157, 0.017421602787456445, 0.013937282229965157, 0.013937282229965157, 0.010452961672473868, 0.010452961672473868, 0.010452961672473868, 0.013937282229965157, 0.013937282229965157, 0.013937282229965157, 0.017421602787456445, 0.020905923344947737, 0.020905923344947737, 0.020905923344947737, 0.024390243902439025, 0.10801393728222997, 0.10104529616724739, 0.2578397212543554, 0.3240418118466899, 0.7456445993031359, 0.4250871080139373, 0.47735191637630664, 0.5052264808362369, 0.47735191637630664, 0.6341463414634146, 0.6829268292682927, 0.7700348432055749, 0.8850174216027874, 0.818815331010453, 0.7317073170731707, 0.6655052264808362, 0.627177700348432, 0.4843205574912892, 0.5400696864111498, 0.5679442508710801, 0.578397212543554, 0.5435540069686411, 0.5470383275261324, 0.5609756097560976, 0.5679442508710801, 0.5749128919860628, 0.5853658536585366, 0.5923344947735192, 0.5923344947735192, 0.6062717770034843, 0.6027874564459931, 0.6202090592334495, 0.627177700348432, 0.6655052264808362, 0.6689895470383276, 0.7003484320557491, 0.7038327526132404, 0.7038327526132404, 0.710801393728223, 0.7177700348432056, 0.8048780487804879, 0.818815331010453, 0.867595818815331, 0.8780487804878049, 0.8815331010452961, 0.8710801393728222, 0.8606271777003485, 0.8153310104529616, 0.8048780487804879, 0.735191637630662, 0.7491289198606271, 0.7560975609756098, 0.7560975609756098, 0.7526132404181185, 0.7560975609756098, 0.7526132404181185, 0.7526132404181185, 0.7491289198606271, 0.7491289198606271, 0.7491289198606271, 0.7526132404181185, 0.7526132404181185, 0.7560975609756098, 0.7560975609756098, 0.8292682926829268, 0.7560975609756098, 0.7735191637630662, 0.7526132404181185, 0.7630662020905923, 0.8048780487804879, 0.8362369337979094, 0.9477351916376306, 0.9163763066202091, 0.8048780487804879, 0.8048780487804879, 0.7526132404181185, 0.7421602787456446, 0.7073170731707317, 0.7073170731707317, 0.7073170731707317, 0.7073170731707317, 0.7073170731707317, 0.7073170731707317, 0.7073170731707317, 0.7073170731707317, 0.7073170731707317, 0.7073170731707317, 0.7073170731707317, 0.7073170731707317, 0.710801393728223, 0.710801393728223, 0.710801393728223, 0.7073170731707317, 0.710801393728223, 0.710801393728223, 0.710801393728223, 0.710801393728223, 0.710801393728223, 0.710801393728223, 0.710801393728223, 0.7142857142857143, 0.7142857142857143, 0.7142857142857143, 0.7177700348432056, 0.7421602787456446], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Ribosomal_S13_N.gap.json b/pfam_gap_rates/Ribosomal_S13_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..da8307759020be75c0476c7b73ad1c269bae6ac6
--- /dev/null
+++ b/pfam_gap_rates/Ribosomal_S13_N.gap.json
@@ -0,0 +1 @@
+{"family": "Ribosomal_S13_N", "n_seqs": 468, "length": 60, "gap_rates": [0.13247863247863248, 0.13034188034188035, 0.13034188034188035, 0.1047008547008547, 0.07264957264957266, 0.06837606837606838, 0.06196581196581197, 0.05128205128205128, 0.042735042735042736, 0.0405982905982906, 0.03418803418803419, 0.03418803418803419, 0.03205128205128205, 0.03205128205128205, 0.029914529914529916, 0.029914529914529916, 0.029914529914529916, 0.029914529914529916, 0.029914529914529916, 0.029914529914529916, 0.023504273504273504, 0.023504273504273504, 0.019230769230769232, 0.017094017094017096, 0.017094017094017096, 0.017094017094017096, 0.017094017094017096, 0.019230769230769232, 0.017094017094017096, 0.017094017094017096, 0.017094017094017096, 0.01282051282051282, 0.010683760683760684, 0.010683760683760684, 0.017094017094017096, 0.01282051282051282, 0.01282051282051282, 0.01282051282051282, 0.01282051282051282, 0.010683760683760684, 0.010683760683760684, 0.010683760683760684, 0.010683760683760684, 0.010683760683760684, 0.010683760683760684, 0.010683760683760684, 0.010683760683760684, 0.01282051282051282, 0.01282051282051282, 0.014957264957264958, 0.014957264957264958, 0.017094017094017096, 0.021367521367521368, 0.021367521367521368, 0.021367521367521368, 0.021367521367521368, 0.021367521367521368, 0.04700854700854701, 0.05128205128205128, 0.057692307692307696], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Ribosomal_S4e.gap.json b/pfam_gap_rates/Ribosomal_S4e.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f81c3725474fd16cf4ef5953217f1547627ae561
--- /dev/null
+++ b/pfam_gap_rates/Ribosomal_S4e.gap.json
@@ -0,0 +1 @@
+{"family": "Ribosomal_S4e", "n_seqs": 571, "length": 77, "gap_rates": [0.3239929947460595, 0.11033274956217162, 0.08756567425569177, 0.08581436077057793, 0.0840630472854641, 0.08231173380035026, 0.08056042031523643, 0.08056042031523643, 0.08056042031523643, 0.08056042031523643, 0.07355516637478109, 0.07180385288966724, 0.07180385288966724, 0.07530647985989491, 0.06830122591943957, 0.07005253940455342, 0.07005253940455342, 0.07005253940455342, 0.07005253940455342, 0.05779334500875657, 0.07705779334500876, 0.07005253940455342, 0.0542907180385289, 0.043782837127845885, 0.04203152364273205, 0.02276707530647986, 0.03152364273204904, 0.02626970227670753, 0.024518388791593695, 0.024518388791593695, 0.02276707530647986, 0.02276707530647986, 0.02276707530647986, 0.02276707530647986, 0.017513134851138354, 0.01576182136602452, 0.01576182136602452, 0.017513134851138354, 0.01576182136602452, 0.01926444833625219, 0.014010507880910683, 0.014010507880910683, 0.01576182136602452, 0.01576182136602452, 0.01576182136602452, 0.01576182136602452, 0.01576182136602452, 0.01576182136602452, 0.017513134851138354, 0.01576182136602452, 0.01576182136602452, 0.014010507880910683, 0.017513134851138354, 0.017513134851138354, 0.017513134851138354, 0.021015761821366025, 0.9492119089316988, 0.9334500875656743, 0.021015761821366025, 0.03327495621716287, 0.08056042031523643, 0.02626970227670753, 0.024518388791593695, 0.02626970227670753, 0.03152364273204904, 0.03152364273204904, 0.03152364273204904, 0.03152364273204904, 0.03502626970227671, 0.03327495621716287, 0.03327495621716287, 0.03327495621716287, 0.03677758318739054, 0.050788091068301226, 0.0595446584938704, 0.0647985989492119, 0.138353765323993], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Ribosomal_S5.gap.json b/pfam_gap_rates/Ribosomal_S5.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..79149ea7105af9b6a37af48cdcbae51b6316f58b
--- /dev/null
+++ b/pfam_gap_rates/Ribosomal_S5.gap.json
@@ -0,0 +1 @@
+{"family": "Ribosomal_S5", "n_seqs": 3124, "length": 65, "gap_rates": [0.29961587708066584, 0.15140845070422534, 0.0528169014084507, 0.03841229193341869, 0.03265044814340589, 0.023687580025608196, 0.02176696542893726, 0.019206145966709345, 0.013444302176696543, 0.012163892445582587, 0.011523687580025609, 0.01120358514724712, 0.01056338028169014, 0.009923175416133162, 0.009603072983354673, 0.008642765685019206, 0.00736235595390525, 0.007042253521126761, 0.006722151088348271, 0.006722151088348271, 0.005441741357234315, 0.005441741357234315, 0.004481434058898848, 0.0038412291933418692, 0.003201024327784891, 0.004161331626120359, 0.004481434058898848, 0.004481434058898848, 0.004801536491677336, 0.004801536491677336, 0.005441741357234315, 0.005121638924455826, 0.005761843790012804, 0.005441741357234315, 0.004801536491677336, 0.004481434058898848, 0.004801536491677336, 0.005121638924455826, 0.005121638924455826, 0.004801536491677336, 0.005121638924455826, 0.005121638924455826, 0.005441741357234315, 0.005761843790012804, 0.005441741357234315, 0.006081946222791294, 0.006402048655569782, 0.006722151088348271, 0.006722151088348271, 0.00736235595390525, 0.008002560819462228, 0.008962868117797696, 0.01088348271446863, 0.01056338028169014, 0.011843790012804098, 0.011843790012804098, 0.011843790012804098, 0.012163892445582587, 0.012163892445582587, 0.012163892445582587, 0.013444302176696543, 0.01792573623559539, 0.029449423815621, 0.05921895006402049, 0.2967349551856594], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Ribosomal_S5_C.gap.json b/pfam_gap_rates/Ribosomal_S5_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..1437de08f92b079943d100b4542c903e1a5b9304
--- /dev/null
+++ b/pfam_gap_rates/Ribosomal_S5_C.gap.json
@@ -0,0 +1 @@
+{"family": "Ribosomal_S5_C", "n_seqs": 3158, "length": 73, "gap_rates": [0.7881570614312856, 0.1488283723875871, 0.051931602279924, 0.037365421152628246, 0.030398986700443317, 0.029449018366054465, 0.025965801139962, 0.024382520582647244, 0.023749208359721344, 0.021849271690943636, 0.02058264724509183, 0.019316022799240027, 0.01773274224192527, 0.026599113362887904, 0.019949335022165927, 0.016466117796073463, 0.019632678910702975, 0.015199493350221659, 0.012349588347055098, 0.009816339455351488, 0.009816339455351488, 0.009183027232425586, 0.008549715009499683, 0.008549715009499683, 0.008233058898036731, 0.006333122229259025, 0.006016466117796073, 0.006016466117796073, 0.005699810006333122, 0.00506649778340722, 0.00506649778340722, 0.002216592780240659, 0.002216592780240659, 0.00253324889170361, 0.002216592780240659, 0.002849905003166561, 0.00253324889170361, 0.00253324889170361, 0.0031665611146295125, 0.002849905003166561, 0.002849905003166561, 0.0031665611146295125, 0.0034832172260924636, 0.0034832172260924636, 0.7628245725142495, 0.004116529449018366, 0.0037998733375554147, 0.0037998733375554147, 0.004116529449018366, 0.00506649778340722, 0.005383153894870171, 0.005699810006333122, 0.007283090563647878, 0.008233058898036731, 0.009499683343888538, 0.009816339455351488, 0.010766307789740342, 0.012349588347055098, 0.015199493350221659, 0.017099430018999367, 0.02026599113362888, 0.023749208359721344, 0.028499050031665613, 0.04369854338188727, 0.08074730842305257, 0.10766307789740343, 0.12887903736542114, 0.2963901203293224, 0.16909436352121596, 0.19506016466117795, 0.20487650411652944, 0.22894236858771375, 0.2615579480683977], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Ribosomal_S7.gap.json b/pfam_gap_rates/Ribosomal_S7.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..767078b0cae26d17980d7fbb5d294638415d3ca5
--- /dev/null
+++ b/pfam_gap_rates/Ribosomal_S7.gap.json
@@ -0,0 +1 @@
+{"family": "Ribosomal_S7", "n_seqs": 3129, "length": 162, "gap_rates": [0.4627676573985299, 0.44838606583573026, 0.33716842441674655, 0.33301374240971554, 0.32566315116650685, 0.3218280600830936, 0.3147970597635027, 0.3119207414509428, 0.3100031959092362, 0.3055289229785874, 0.29594119527005436, 0.28859060402684567, 0.2566315116650687, 0.2412911473314158, 0.22083732821987856, 0.1559603707254714, 0.12432086928731224, 0.10706295941195271, 0.09108341323106424, 0.08053691275167785, 0.07925854905720678, 0.07574304889741132, 0.07478427612655801, 0.07318632150846915, 0.07254713966123362, 0.06775327580696708, 0.06615532118887824, 0.06615532118887824, 0.06487695749440715, 0.06391818472355384, 0.05113454777884308, 0.050175775007989774, 0.850431447746884, 0.850431447746884, 0.850431447746884, 0.850431447746884, 0.045062320230105465, 0.045062320230105465, 0.044423138382869924, 0.043464365612016616, 0.043464365612016616, 0.04314477468839885, 0.04282518376478108, 0.04282518376478108, 0.04218600191754554, 0.04186641099392777, 0.04186641099392777, 0.040907638223074465, 0.0405880472994567, 0.0405880472994567, 0.03803131991051454, 0.03803131991051454, 0.037392138063279005, 0.037392138063279005, 0.037392138063279005, 0.037392138063279005, 0.03867050175775008, 0.9258549057206775, 0.929370405880473, 0.9165867689357622, 0.070629594119527, 0.07350591243208693, 0.04122722914669223, 0.9360818152764462, 0.03803131991051454, 0.03611377436880792, 0.03515500159795462, 0.03547459252157239, 0.03483541067433685, 0.03547459252157239, 0.03515500159795462, 0.03515500159795462, 0.03483541067433685, 0.03387663790348354, 0.03419622882710131, 0.03195909236177692, 0.03036113774368808, 0.03131991051454139, 0.031639501438159155, 0.03131991051454139, 0.030680728667305847, 0.031000319590923617, 0.03131991051454139, 0.031000319590923617, 0.03131991051454139, 0.03131991051454139, 0.03131991051454139, 0.031639501438159155, 0.030680728667305847, 0.03131991051454139, 0.03131991051454139, 0.03131991051454139, 0.031639501438159155, 0.03291786513263023, 0.03291786513263023, 0.03195909236177692, 0.031000319590923617, 0.030680728667305847, 0.03004154682007031, 0.03004154682007031, 0.028443592201981463, 0.027804410354745925, 0.027484819431128155, 0.027484819431128155, 0.027804410354745925, 0.027484819431128155, 0.027165228507510387, 0.02652604666027485, 0.02524768296580377, 0.024928092042186004, 0.024928092042186004, 0.024608501118568233, 0.024928092042186004, 0.02524768296580377, 0.023330137424097154, 0.022690955576861616, 0.8322147651006712, 0.8344519015659956, 0.8277404921700223, 0.023969319271332695, 0.02524768296580377, 0.02556727388942154, 0.026845637583892617, 0.027165228507510387, 0.02940236497283477, 0.028443592201981463, 0.02652604666027485, 0.026845637583892617, 0.027165228507510387, 0.027165228507510387, 0.027484819431128155, 0.027484819431128155, 0.027804410354745925, 0.027804410354745925, 0.027804410354745925, 0.028124001278363696, 0.028443592201981463, 0.028443592201981463, 0.029082774049217, 0.029082774049217, 0.029082774049217, 0.03036113774368808, 0.8392457654202621, 0.8392457654202621, 0.03131991051454139, 0.032278683285394696, 0.03291786513263023, 0.03483541067433685, 0.03515500159795462, 0.03547459252157239, 0.03547459252157239, 0.036752956216043464, 0.03867050175775008, 0.039948865452221156, 0.04122722914669223, 0.04186641099392777, 0.04218600191754554, 0.04378395653563439, 0.04538191115372323, 0.049217002237136466, 0.05145413870246085, 0.06807286673058485], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Ring_hydroxyl_A.gap.json b/pfam_gap_rates/Ring_hydroxyl_A.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..59e67a6295efaa012c1f49abfa35b459aaee227c
--- /dev/null
+++ b/pfam_gap_rates/Ring_hydroxyl_A.gap.json
@@ -0,0 +1 @@
+{"family": "Ring_hydroxyl_A", "n_seqs": 1350, "length": 323, "gap_rates": [0.8414814814814815, 0.6807407407407408, 0.5807407407407408, 0.5192592592592593, 0.49407407407407405, 0.47333333333333333, 0.43925925925925924, 0.38592592592592595, 0.3237037037037037, 0.277037037037037, 0.2348148148148148, 0.2162962962962963, 0.14666666666666667, 0.9007407407407407, 0.9044444444444445, 0.9133333333333333, 0.9207407407407407, 0.9288888888888889, 0.9318518518518518, 0.9325925925925926, 0.9325925925925926, 0.9325925925925926, 0.9481481481481482, 0.9355555555555556, 0.9325925925925926, 0.9325925925925926, 0.9325925925925926, 0.9296296296296296, 0.9259259259259259, 0.9177777777777778, 0.9088888888888889, 0.902962962962963, 0.8918518518518519, 0.14, 0.1, 0.09851851851851852, 0.0962962962962963, 0.09481481481481481, 0.09333333333333334, 0.09259259259259259, 0.09259259259259259, 0.09111111111111111, 0.09111111111111111, 0.09185185185185185, 0.09851851851851852, 0.09777777777777778, 0.09111111111111111, 0.8933333333333333, 0.09111111111111111, 0.09111111111111111, 0.09111111111111111, 0.09555555555555556, 0.09185185185185185, 0.10296296296296296, 0.09259259259259259, 0.09259259259259259, 0.09259259259259259, 0.09259259259259259, 0.09259259259259259, 0.18592592592592594, 0.15703703703703703, 0.14962962962962964, 0.15185185185185185, 0.1474074074074074, 0.12074074074074075, 0.1162962962962963, 0.13185185185185186, 0.1474074074074074, 0.1511111111111111, 0.58, 0.6711111111111111, 0.7333333333333333, 0.76, 0.7770370370370371, 0.7896296296296297, 0.8022222222222222, 0.8140740740740741, 0.8244444444444444, 0.8466666666666667, 0.8770370370370371, 0.8962962962962963, 0.914074074074074, 0.9333333333333333, 0.9488888888888889, 0.9466666666666667, 0.9162962962962963, 0.9044444444444445, 0.8925925925925926, 0.8644444444444445, 0.8355555555555556, 0.8177777777777778, 0.8074074074074075, 0.7977777777777778, 0.7866666666666666, 0.7718518518518519, 0.7474074074074074, 0.72, 0.6518518518518519, 0.5688888888888889, 0.5014814814814815, 0.4725925925925926, 0.44074074074074077, 0.40814814814814815, 0.3888888888888889, 0.3244444444444444, 0.28444444444444444, 0.2607407407407407, 0.24296296296296296, 0.23407407407407407, 0.2288888888888889, 0.22, 0.21851851851851853, 0.20666666666666667, 0.19185185185185186, 0.2074074074074074, 0.21407407407407408, 0.7274074074074074, 0.6955555555555556, 0.6622222222222223, 0.5777777777777777, 0.5488888888888889, 0.5177777777777778, 0.5, 0.4748148148148148, 0.4474074074074074, 0.43037037037037035, 0.3888888888888889, 0.38222222222222224, 0.29777777777777775, 0.25851851851851854, 0.2288888888888889, 0.21407407407407408, 0.23333333333333334, 0.1948148148148148, 0.19111111111111112, 0.18814814814814815, 0.18962962962962962, 0.19333333333333333, 0.7325925925925926, 0.21259259259259258, 0.18814814814814815, 0.18222222222222223, 0.18222222222222223, 0.20962962962962964, 0.18814814814814815, 0.18074074074074073, 0.9066666666666666, 0.9318518518518518, 0.8888888888888888, 0.19777777777777777, 0.18666666666666668, 0.1748148148148148, 0.17333333333333334, 0.1711111111111111, 0.1711111111111111, 0.16962962962962963, 0.1688888888888889, 0.1637037037037037, 0.17037037037037037, 0.13037037037037036, 0.7948148148148149, 0.8474074074074074, 0.8666666666666667, 0.8792592592592593, 0.9014814814814814, 0.9288888888888889, 0.9348148148148148, 0.9496296296296296, 0.9392592592592592, 0.9325925925925926, 0.9148148148148149, 0.8851851851851852, 0.8740740740740741, 0.8503703703703703, 0.8288888888888889, 0.7822222222222223, 0.1259259259259259, 0.10962962962962963, 0.10666666666666667, 0.09555555555555556, 0.09407407407407407, 0.09851851851851852, 0.09555555555555556, 0.09259259259259259, 0.09481481481481481, 0.09259259259259259, 0.09407407407407407, 0.9444444444444444, 0.25555555555555554, 0.19037037037037038, 0.12962962962962962, 0.1274074074074074, 0.09407407407407407, 0.09481481481481481, 0.09037037037037036, 0.08888888888888889, 0.08666666666666667, 0.09037037037037036, 0.08962962962962963, 0.08666666666666667, 0.0874074074074074, 0.9318518518518518, 0.902962962962963, 0.08666666666666667, 0.08666666666666667, 0.08592592592592592, 0.08592592592592592, 0.08592592592592592, 0.08592592592592592, 0.08592592592592592, 0.08592592592592592, 0.0874074074074074, 0.08666666666666667, 0.08888888888888889, 0.08888888888888889, 0.08814814814814814, 0.0874074074074074, 0.0874074074074074, 0.0874074074074074, 0.0874074074074074, 0.36444444444444446, 0.4111111111111111, 0.9348148148148148, 0.8533333333333334, 0.14444444444444443, 0.12074074074074075, 0.10962962962962963, 0.10592592592592592, 0.12148148148148148, 0.9237037037037037, 0.7888888888888889, 0.1037037037037037, 0.09925925925925926, 0.09703703703703703, 0.0962962962962963, 0.09703703703703703, 0.09777777777777778, 0.09777777777777778, 0.0962962962962963, 0.10074074074074074, 0.1259259259259259, 0.502962962962963, 0.6066666666666667, 0.5311111111111111, 0.7770370370370371, 0.9414814814814815, 0.8148148148148148, 0.7222222222222222, 0.5718518518518518, 0.09481481481481481, 0.09407407407407407, 0.09407407407407407, 0.09111111111111111, 0.09111111111111111, 0.09111111111111111, 0.09111111111111111, 0.09185185185185185, 0.09185185185185185, 0.09259259259259259, 0.09259259259259259, 0.09185185185185185, 0.09185185185185185, 0.09555555555555556, 0.1, 0.1, 0.10444444444444445, 0.10888888888888888, 0.7748148148148148, 0.7874074074074074, 0.8125925925925926, 0.8214814814814815, 0.8340740740740741, 0.8562962962962963, 0.88, 0.8962962962962963, 0.9059259259259259, 0.9214814814814815, 0.9488888888888889, 0.9118518518518518, 0.9007407407407407, 0.8844444444444445, 0.8733333333333333, 0.8474074074074074, 0.8214814814814815, 0.8162962962962963, 0.8103703703703704, 0.7755555555555556, 0.7748148148148148, 0.11481481481481481, 0.18296296296296297, 0.1814814814814815, 0.945925925925926, 0.40074074074074073, 0.21407407407407408, 0.2111111111111111, 0.2288888888888889, 0.25407407407407406, 0.2859259259259259, 0.8955555555555555, 0.9288888888888889, 0.942962962962963, 0.9385185185185185, 0.9177777777777778, 0.8703703703703703, 0.19111111111111112, 0.16444444444444445, 0.16444444444444445, 0.16444444444444445, 0.16666666666666666, 0.16814814814814816, 0.16814814814814816, 0.17555555555555555, 0.18, 0.1837037037037037, 0.1837037037037037, 0.1874074074074074, 0.2, 0.20444444444444446, 0.21777777777777776, 0.24222222222222223, 0.2851851851851852, 0.3488888888888889, 0.6555555555555556], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Rit1_C.gap.json b/pfam_gap_rates/Rit1_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..32a0caa0c840f562cc9a73339f2df6e239894fd3
--- /dev/null
+++ b/pfam_gap_rates/Rit1_C.gap.json
@@ -0,0 +1 @@
+{"family": "Rit1_C", "n_seqs": 202, "length": 331, "gap_rates": [0.3415841584158416, 0.30198019801980197, 0.2871287128712871, 0.2623762376237624, 0.24257425742574257, 0.22772277227722773, 0.22277227722772278, 0.22277227722772278, 0.21782178217821782, 0.21782178217821782, 0.21782178217821782, 0.21782178217821782, 0.21782178217821782, 0.21782178217821782, 0.21782178217821782, 0.21782178217821782, 0.21782178217821782, 0.21782178217821782, 0.21782178217821782, 0.21782178217821782, 0.21782178217821782, 0.21287128712871287, 0.22277227722772278, 0.22277227722772278, 0.23267326732673269, 0.21782178217821782, 0.21782178217821782, 0.21782178217821782, 0.22277227722772278, 0.48514851485148514, 0.21287128712871287, 0.9306930693069307, 0.9405940594059405, 0.9356435643564357, 0.9306930693069307, 0.21287128712871287, 0.2079207920792079, 0.20297029702970298, 0.20297029702970298, 0.19801980198019803, 0.19801980198019803, 0.20297029702970298, 0.20297029702970298, 0.20297029702970298, 0.20297029702970298, 0.19801980198019803, 0.2079207920792079, 0.2079207920792079, 0.20297029702970298, 0.22277227722772278, 0.2524752475247525, 0.2722772277227723, 0.28217821782178215, 0.9158415841584159, 0.2871287128712871, 0.22277227722772278, 0.900990099009901, 0.19306930693069307, 0.18811881188118812, 0.18811881188118812, 0.18811881188118812, 0.18811881188118812, 0.18811881188118812, 0.19306930693069307, 0.19306930693069307, 0.19306930693069307, 0.19306930693069307, 0.19306930693069307, 0.19306930693069307, 0.18811881188118812, 0.18316831683168316, 0.18316831683168316, 0.1782178217821782, 0.1782178217821782, 0.17326732673267325, 0.17326732673267325, 0.1782178217821782, 0.1782178217821782, 0.17326732673267325, 0.17326732673267325, 0.1782178217821782, 0.1782178217821782, 0.1782178217821782, 0.1782178217821782, 0.1782178217821782, 0.17326732673267325, 0.17326732673267325, 0.1782178217821782, 0.1782178217821782, 0.16831683168316833, 0.16336633663366337, 0.16831683168316833, 0.19306930693069307, 0.19801980198019803, 0.19801980198019803, 0.20297029702970298, 0.20297029702970298, 0.20297029702970298, 0.20297029702970298, 0.20297029702970298, 0.20297029702970298, 0.22277227722772278, 0.19801980198019803, 0.19801980198019803, 0.16336633663366337, 0.16336633663366337, 0.16336633663366337, 0.16336633663366337, 0.1188118811881188, 0.1188118811881188, 0.1188118811881188, 0.1188118811881188, 0.1188118811881188, 0.1188118811881188, 0.1188118811881188, 0.1188118811881188, 0.1188118811881188, 0.1188118811881188, 0.1188118811881188, 0.1188118811881188, 0.12376237623762376, 0.12376237623762376, 0.12376237623762376, 0.12376237623762376, 0.12376237623762376, 0.12871287128712872, 0.4405940594059406, 0.48514851485148514, 0.49504950495049505, 0.5198019801980198, 0.8514851485148515, 0.5544554455445545, 0.8465346534653465, 0.9108910891089109, 0.9405940594059405, 0.9257425742574258, 0.8960396039603961, 0.7574257425742574, 0.3465346534653465, 0.504950495049505, 0.22277227722772278, 0.7227722772277227, 0.7277227722772277, 0.7425742574257426, 0.7871287128712872, 0.806930693069307, 0.8267326732673267, 0.8366336633663366, 0.8712871287128713, 0.9108910891089109, 0.9207920792079208, 0.9405940594059405, 0.9306930693069307, 0.9207920792079208, 0.900990099009901, 0.8613861386138614, 0.8316831683168316, 0.8118811881188119, 0.806930693069307, 0.7623762376237624, 0.7425742574257426, 0.7227722772277227, 0.7227722772277227, 0.16336633663366337, 0.12871287128712872, 0.12376237623762376, 0.13366336633663367, 0.12871287128712872, 0.12376237623762376, 0.14356435643564355, 0.5396039603960396, 0.3564356435643564, 0.21782178217821782, 0.11386138613861387, 0.10891089108910891, 0.16831683168316833, 0.10891089108910891, 0.11386138613861387, 0.10891089108910891, 0.10891089108910891, 0.10891089108910891, 0.10891089108910891, 0.10891089108910891, 0.10891089108910891, 0.10891089108910891, 0.10891089108910891, 0.10891089108910891, 0.10891089108910891, 0.10891089108910891, 0.10396039603960396, 0.10396039603960396, 0.10396039603960396, 0.10396039603960396, 0.10396039603960396, 0.10396039603960396, 0.10396039603960396, 0.11386138613861387, 0.1188118811881188, 0.1188118811881188, 0.12376237623762376, 0.12376237623762376, 0.9257425742574258, 0.8712871287128713, 0.1188118811881188, 0.12871287128712872, 0.12871287128712872, 0.13861386138613863, 0.3316831683168317, 0.3316831683168317, 0.3118811881188119, 0.297029702970297, 0.12376237623762376, 0.12376237623762376, 0.9405940594059405, 0.12376237623762376, 0.12376237623762376, 0.12376237623762376, 0.12376237623762376, 0.12376237623762376, 0.12376237623762376, 0.12376237623762376, 0.12376237623762376, 0.12376237623762376, 0.12871287128712872, 0.9455445544554455, 0.13366336633663367, 0.14356435643564355, 0.1485148514851485, 0.1485148514851485, 0.1485148514851485, 0.1485148514851485, 0.1485148514851485, 0.1485148514851485, 0.14356435643564355, 0.15346534653465346, 0.20297029702970298, 0.49504950495049505, 0.7871287128712872, 0.8712871287128713, 0.8960396039603961, 0.9158415841584159, 0.9356435643564357, 0.9455445544554455, 0.9356435643564357, 0.9306930693069307, 0.905940594059406, 0.8861386138613861, 0.8465346534653465, 0.5594059405940595, 0.4603960396039604, 0.18811881188118812, 0.13861386138613863, 0.14356435643564355, 0.13861386138613863, 0.13861386138613863, 0.13861386138613863, 0.13366336633663367, 0.13366336633663367, 0.13366336633663367, 0.13366336633663367, 0.13366336633663367, 0.13366336633663367, 0.13366336633663367, 0.27722772277227725, 0.9207920792079208, 0.9207920792079208, 0.504950495049505, 0.5742574257425742, 0.6435643564356436, 0.5099009900990099, 0.6138613861386139, 0.594059405940594, 0.9455445544554455, 0.6485148514851485, 0.4801980198019802, 0.2871287128712871, 0.19306930693069307, 0.18316831683168316, 0.16831683168316833, 0.16336633663366337, 0.15841584158415842, 0.13861386138613863, 0.16336633663366337, 0.4306930693069307, 0.3811881188118812, 0.13366336633663367, 0.13366336633663367, 0.1188118811881188, 0.1188118811881188, 0.1188118811881188, 0.1188118811881188, 0.1188118811881188, 0.1188118811881188, 0.12376237623762376, 0.12376237623762376, 0.12376237623762376, 0.12376237623762376, 0.12376237623762376, 0.12376237623762376, 0.12376237623762376, 0.12376237623762376, 0.12376237623762376, 0.12871287128712872, 0.12871287128712872, 0.12871287128712872, 0.12871287128712872, 0.12871287128712872, 0.12871287128712872, 0.12871287128712872, 0.13366336633663367, 0.13366336633663367, 0.13861386138613863, 0.13861386138613863, 0.14356435643564355, 0.15346534653465346, 0.1782178217821782, 0.16336633663366337, 0.9306930693069307, 0.16831683168316833, 0.1782178217821782, 0.19306930693069307, 0.19306930693069307, 0.19801980198019803, 0.19801980198019803, 0.20297029702970298, 0.21287128712871287, 0.21782178217821782, 0.22277227722772278, 0.23267326732673269, 0.28217821782178215, 0.7673267326732673], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Robl_LC7.gap.json b/pfam_gap_rates/Robl_LC7.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b68378625428de04e6adb9aff7255632bdb3eb09
--- /dev/null
+++ b/pfam_gap_rates/Robl_LC7.gap.json
@@ -0,0 +1 @@
+{"family": "Robl_LC7", "n_seqs": 1282, "length": 95, "gap_rates": [0.8861154446177847, 0.5522620904836193, 0.4173166926677067, 0.3330733229329173, 0.26833073322932915, 0.21996879875195008, 0.19110764430577223, 0.16614664586583464, 0.15288611544461778, 0.13260530421216848, 0.12324492979719189, 0.10140405616224649, 0.08658346333853355, 0.07566302652106084, 0.07254290171606864, 0.06942277691107644, 0.06708268330733229, 0.06474258970358815, 0.06162246489859594, 0.056162246489859596, 0.05382215288611544, 0.05538221528861154, 0.0530421216848674, 0.05382215288611544, 0.046801872074883, 0.0452418096723869, 0.0421216848673947, 0.041341653666146644, 0.0405616224648986, 0.039781591263650544, 0.9274570982839313, 0.5655226209048362, 0.25585023400936036, 0.05538221528861154, 0.04758190327613104, 0.033541341653666144, 0.028861154446177848, 0.0265210608424337, 0.02262090483619345, 0.01950078003120125, 0.01170046801872075, 0.0078003120124804995, 0.0070202808112324495, 0.0070202808112324495, 0.0070202808112324495, 0.00858034321372855, 0.0109204368174727, 0.0109204368174727, 0.01014040561622465, 0.0124804992199688, 0.0124804992199688, 0.0109204368174727, 0.01170046801872075, 0.0124804992199688, 0.015600624024960999, 0.0171606864274571, 0.01638065522620905, 0.0171606864274571, 0.01638065522620905, 0.0171606864274571, 0.01638065522620905, 0.0171606864274571, 0.8970358814352574, 0.5865834633385335, 0.030421216848673948, 0.02106084243369735, 0.01950078003120125, 0.01950078003120125, 0.01950078003120125, 0.01950078003120125, 0.0202808112324493, 0.0202808112324493, 0.0202808112324493, 0.0202808112324493, 0.02106084243369735, 0.02262090483619345, 0.0249609984399376, 0.02574102964118565, 0.027301092043681748, 0.028861154446177848, 0.031201248049921998, 0.031981279251170044, 0.0358814352574103, 0.041341653666146644, 0.0530421216848674, 0.06162246489859594, 0.06630265210608424, 0.22620904836193448, 0.08034321372854915, 0.08268330733229329, 0.0873634945397816, 0.10218408736349453, 0.12792511700468018, 0.21996879875195008, 0.5670826833073322], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Rrp44_S1.gap.json b/pfam_gap_rates/Rrp44_S1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..24d126975d5f099e6d2dad235473e147fb47a96e
--- /dev/null
+++ b/pfam_gap_rates/Rrp44_S1.gap.json
@@ -0,0 +1 @@
+{"family": "Rrp44_S1", "n_seqs": 297, "length": 104, "gap_rates": [0.9023569023569024, 0.27946127946127947, 0.08417508417508418, 0.03367003367003367, 0.026936026936026935, 0.02356902356902357, 0.016835016835016835, 0.016835016835016835, 0.013468013468013467, 0.013468013468013467, 0.013468013468013467, 0.013468013468013467, 0.013468013468013467, 0.010101010101010102, 0.003367003367003367, 0.003367003367003367, 0.0, 0.003367003367003367, 0.003367003367003367, 0.003367003367003367, 0.003367003367003367, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.003367003367003367, 0.003367003367003367, 0.006734006734006734, 0.14814814814814814, 0.16161616161616163, 0.25925925925925924, 0.3569023569023569, 0.2996632996632997, 0.40404040404040403, 0.4511784511784512, 0.4478114478114478, 0.8383838383838383, 0.8585858585858586, 0.8821548821548821, 0.8922558922558923, 0.9259259259259259, 0.9393939393939394, 0.9326599326599326, 0.9023569023569024, 0.8855218855218855, 0.8787878787878788, 0.8451178451178452, 0.8215488215488216, 0.37037037037037035, 0.1919191919191919, 0.07744107744107744, 0.08080808080808081, 0.07744107744107744, 0.07407407407407407, 0.0707070707070707, 0.06397306397306397, 0.0707070707070707, 0.08754208754208755, 0.08080808080808081, 0.09427609427609428, 0.09427609427609428, 0.10101010101010101, 0.08754208754208755, 0.08754208754208755, 0.12794612794612795, 0.4511784511784512, 0.3838383838383838, 0.622895622895623, 0.5858585858585859, 0.4208754208754209, 0.9057239057239057, 0.9292929292929293, 0.8686868686868687, 0.19865319865319866, 0.07744107744107744, 0.07744107744107744, 0.07744107744107744, 0.07744107744107744, 0.07744107744107744, 0.07744107744107744, 0.07744107744107744, 0.07744107744107744, 0.07744107744107744, 0.08080808080808081, 0.08080808080808081, 0.08417508417508418, 0.08417508417508418, 0.09090909090909091, 0.10437710437710437, 0.16835016835016836, 0.23232323232323232, 0.29292929292929293, 0.3434343434343434, 0.4074074074074074, 0.4511784511784512, 0.5218855218855218, 0.5723905723905723, 0.5959595959595959, 0.6060606060606061, 0.6161616161616161, 0.734006734006734], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/RusA.gap.json b/pfam_gap_rates/RusA.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a07497c892b54f3b568589df58026eb63a1540e0
--- /dev/null
+++ b/pfam_gap_rates/RusA.gap.json
@@ -0,0 +1 @@
+{"family": "RusA", "n_seqs": 315, "length": 152, "gap_rates": [0.7111111111111111, 0.47619047619047616, 0.41904761904761906, 0.3682539682539683, 0.4603174603174603, 0.4444444444444444, 0.32063492063492066, 0.31746031746031744, 0.30793650793650795, 0.2984126984126984, 0.29523809523809524, 0.2857142857142857, 0.28253968253968254, 0.2761904761904762, 0.27936507936507937, 0.273015873015873, 0.26031746031746034, 0.7047619047619048, 0.9206349206349206, 0.8412698412698413, 0.6761904761904762, 0.346031746031746, 0.28888888888888886, 0.2, 0.1746031746031746, 0.16507936507936508, 0.14603174603174604, 0.1365079365079365, 0.8825396825396825, 0.8888888888888888, 0.9174603174603174, 0.9174603174603174, 0.8920634920634921, 0.8825396825396825, 0.8793650793650793, 0.1365079365079365, 0.13015873015873017, 0.13015873015873017, 0.11746031746031746, 0.11428571428571428, 0.12698412698412698, 0.12380952380952381, 0.11746031746031746, 0.11746031746031746, 0.11428571428571428, 0.11428571428571428, 0.11746031746031746, 0.11746031746031746, 0.11428571428571428, 0.1111111111111111, 0.11428571428571428, 0.3238095238095238, 0.6349206349206349, 0.5714285714285714, 0.926984126984127, 0.11746031746031746, 0.11428571428571428, 0.1111111111111111, 0.10476190476190476, 0.10158730158730159, 0.9206349206349206, 0.9015873015873016, 0.09206349206349207, 0.08888888888888889, 0.08571428571428572, 0.09206349206349207, 0.07301587301587302, 0.06666666666666667, 0.06349206349206349, 0.06349206349206349, 0.06349206349206349, 0.06031746031746032, 0.06031746031746032, 0.06031746031746032, 0.06349206349206349, 0.3047619047619048, 0.3333333333333333, 0.5619047619047619, 0.5746031746031746, 0.9396825396825397, 0.5873015873015873, 0.5873015873015873, 0.5746031746031746, 0.5714285714285714, 0.6349206349206349, 0.6222222222222222, 0.6095238095238096, 0.5904761904761905, 0.5936507936507937, 0.5904761904761905, 0.5428571428571428, 0.6730158730158731, 0.7365079365079366, 0.9492063492063492, 0.9365079365079365, 0.7047619047619048, 0.6634920634920635, 0.2, 0.050793650793650794, 0.01904761904761905, 0.0031746031746031746, 0.0031746031746031746, 0.006349206349206349, 0.006349206349206349, 0.006349206349206349, 0.009523809523809525, 0.015873015873015872, 0.012698412698412698, 0.009523809523809525, 0.009523809523809525, 0.009523809523809525, 0.009523809523809525, 0.009523809523809525, 0.009523809523809525, 0.9492063492063492, 0.5365079365079365, 0.022222222222222223, 0.025396825396825397, 0.02857142857142857, 0.025396825396825397, 0.015873015873015872, 0.012698412698412698, 0.012698412698412698, 0.012698412698412698, 0.012698412698412698, 0.01904761904761905, 0.9301587301587302, 0.9206349206349206, 0.022222222222222223, 0.022222222222222223, 0.025396825396825397, 0.02857142857142857, 0.031746031746031744, 0.0380952380952381, 0.06031746031746032, 0.9365079365079365, 0.9047619047619048, 0.07936507936507936, 0.10476190476190476, 0.12380952380952381, 0.14603174603174604, 0.16507936507936508, 0.19365079365079366, 0.6825396825396826, 0.20952380952380953, 0.23174603174603176, 0.23492063492063492, 0.24126984126984127, 0.2571428571428571, 0.2761904761904762, 0.4095238095238095, 0.7174603174603175], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/RuvC.gap.json b/pfam_gap_rates/RuvC.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..502b668fc13a42ed7754cd3ca4683e12c1bd98f2
--- /dev/null
+++ b/pfam_gap_rates/RuvC.gap.json
@@ -0,0 +1 @@
+{"family": "RuvC", "n_seqs": 1772, "length": 150, "gap_rates": [0.12641083521444696, 0.04853273137697517, 0.04740406320541761, 0.04401805869074492, 0.04345372460496614, 0.04345372460496614, 0.045146726862302484, 0.04288939051918736, 0.041196388261851014, 0.041196388261851014, 0.040067720090293454, 0.03611738148984198, 0.03611738148984198, 0.034988713318284424, 0.034988713318284424, 0.034424379232505645, 0.034424379232505645, 0.03724604966139955, 0.8053047404063205, 0.03837471783295711, 0.040632054176072234, 0.040067720090293454, 0.03781038374717833, 0.03668171557562077, 0.029909706546275394, 0.025959367945823927, 0.024266365688487584, 0.023137697516930022, 0.023137697516930022, 0.02200902934537246, 0.022573363431151242, 0.022573363431151242, 0.022573363431151242, 0.023137697516930022, 0.022573363431151242, 0.022573363431151242, 0.022573363431151242, 0.2229119638826185, 0.022573363431151242, 0.02144469525959368, 0.019751693002257337, 0.01805869074492099, 0.017494356659142212, 0.016930022573363433, 0.016930022573363433, 0.017494356659142212, 0.016930022573363433, 0.016930022573363433, 0.01636568848758465, 0.01636568848758465, 0.01636568848758465, 0.01636568848758465, 0.015237020316027089, 0.014108352144469526, 0.014108352144469526, 0.014672686230248307, 0.015237020316027089, 0.014672686230248307, 0.014672686230248307, 0.013544018058690745, 0.013544018058690745, 0.013544018058690745, 0.012415349887133182, 0.012415349887133182, 0.012415349887133182, 0.012415349887133182, 0.011851015801354402, 0.011286681715575621, 0.011286681715575621, 0.01072234762979684, 0.011851015801354402, 0.014108352144469526, 0.019187358916478554, 0.015237020316027089, 0.014672686230248307, 0.018623024830699775, 0.015237020316027089, 0.013544018058690745, 0.016930022573363433, 0.012979683972911963, 0.012415349887133182, 0.012979683972911963, 0.012415349887133182, 0.012415349887133182, 0.012415349887133182, 0.012415349887133182, 0.012415349887133182, 0.014108352144469526, 0.012415349887133182, 0.011851015801354402, 0.011851015801354402, 0.011851015801354402, 0.011851015801354402, 0.011286681715575621, 0.011286681715575621, 0.011851015801354402, 0.011851015801354402, 0.011851015801354402, 0.011851015801354402, 0.011851015801354402, 0.011286681715575621, 0.011851015801354402, 0.011851015801354402, 0.012415349887133182, 0.013544018058690745, 0.013544018058690745, 0.012979683972911963, 0.014108352144469526, 0.012979683972911963, 0.011286681715575621, 0.012979683972911963, 0.011286681715575621, 0.01072234762979684, 0.01072234762979684, 0.011286681715575621, 0.010158013544018058, 0.01072234762979684, 0.011286681715575621, 0.011286681715575621, 0.011286681715575621, 0.013544018058690745, 0.014108352144469526, 0.014672686230248307, 0.013544018058690745, 0.014108352144469526, 0.014672686230248307, 0.016930022573363433, 0.017494356659142212, 0.017494356659142212, 0.0208803611738149, 0.04740406320541761, 0.025959367945823927, 0.029909706546275394, 0.029345372460496615, 0.025395033860045147, 0.033860045146726865, 0.2618510158013544, 0.04683972911963882, 0.020316027088036117, 0.020316027088036117, 0.020316027088036117, 0.020316027088036117, 0.020316027088036117, 0.02144469525959368, 0.02200902934537246, 0.022573363431151242, 0.024266365688487584, 0.03611738148984198, 0.05474040632054176, 0.24492099322799096], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/S1-like.gap.json b/pfam_gap_rates/S1-like.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..fe14465f9f90c156c51d7d2f3dfbcc72a086d02d
--- /dev/null
+++ b/pfam_gap_rates/S1-like.gap.json
@@ -0,0 +1 @@
+{"family": "S1-like", "n_seqs": 117, "length": 64, "gap_rates": [0.4358974358974359, 0.38461538461538464, 0.3247863247863248, 0.2564102564102564, 0.15384615384615385, 0.11965811965811966, 0.06837606837606838, 0.03418803418803419, 0.03418803418803419, 0.03418803418803419, 0.9487179487179487, 0.9316239316239316, 0.02564102564102564, 0.017094017094017096, 0.017094017094017096, 0.008547008547008548, 0.008547008547008548, 0.008547008547008548, 0.008547008547008548, 0.008547008547008548, 0.008547008547008548, 0.008547008547008548, 0.008547008547008548, 0.008547008547008548, 0.0, 0.0, 0.0, 0.008547008547008548, 0.008547008547008548, 0.0, 0.9401709401709402, 0.9401709401709402, 0.6068376068376068, 0.008547008547008548, 0.008547008547008548, 0.017094017094017096, 0.017094017094017096, 0.017094017094017096, 0.017094017094017096, 0.9316239316239316, 0.017094017094017096, 0.017094017094017096, 0.017094017094017096, 0.017094017094017096, 0.017094017094017096, 0.017094017094017096, 0.017094017094017096, 0.042735042735042736, 0.06837606837606838, 0.07692307692307693, 0.07692307692307693, 0.08547008547008547, 0.1111111111111111, 0.1282051282051282, 0.13675213675213677, 0.1623931623931624, 0.17094017094017094, 0.15384615384615385, 0.15384615384615385, 0.15384615384615385, 0.1623931623931624, 0.1794871794871795, 0.3076923076923077, 0.3504273504273504], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/S1.gap.json b/pfam_gap_rates/S1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a5c2b35c4ce9e1e0ea71e33f0fdc12b8d4d9a370
--- /dev/null
+++ b/pfam_gap_rates/S1.gap.json
@@ -0,0 +1 @@
+{"family": "S1", "n_seqs": 5000, "length": 87, "gap_rates": [0.912, 0.5614, 0.2504, 0.1054, 0.0606, 0.0442, 0.0328, 0.0248, 0.0204, 0.0148, 0.0136, 0.0116, 0.0108, 0.0104, 0.0098, 0.0098, 0.009, 0.941, 0.0076, 0.0044, 0.0044, 0.0044, 0.0042, 0.004, 0.0036, 0.0034, 0.8782, 0.27, 0.028, 0.0008, 0.0004, 0.0004, 0.0006, 0.0006, 0.0008, 0.001, 0.0012, 0.001, 0.0016, 0.002, 0.058, 0.071, 0.8606, 0.8776, 0.8828, 0.8952, 0.9126, 0.9024, 0.886, 0.8802, 0.8668, 0.853, 0.7346, 0.228, 0.2166, 0.126, 0.0976, 0.0306, 0.0262, 0.0158, 0.0148, 0.0076, 0.008, 0.0076, 0.008, 0.009, 0.009, 0.0106, 0.0108, 0.0116, 0.012, 0.0134, 0.0146, 0.018, 0.0324, 0.039, 0.0442, 0.05, 0.0844, 0.0986, 0.2098, 0.0946, 0.1164, 0.1428, 0.2074, 0.2922, 0.4096], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/S36_mt.gap.json b/pfam_gap_rates/S36_mt.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..fb2304678f119ce99a7eeecfc4820102552d712e
--- /dev/null
+++ b/pfam_gap_rates/S36_mt.gap.json
@@ -0,0 +1 @@
+{"family": "S36_mt", "n_seqs": 163, "length": 135, "gap_rates": [0.4601226993865031, 0.3558282208588957, 0.3496932515337423, 0.3496932515337423, 0.3496932515337423, 0.3496932515337423, 0.3496932515337423, 0.3496932515337423, 0.3496932515337423, 0.3496932515337423, 0.3558282208588957, 0.4294478527607362, 0.4110429447852761, 0.36809815950920244, 0.36809815950920244, 0.4049079754601227, 0.3496932515337423, 0.34355828220858897, 0.4110429447852761, 0.3312883435582822, 0.32515337423312884, 0.31901840490797545, 0.31901840490797545, 0.31901840490797545, 0.31901840490797545, 0.31901840490797545, 0.31901840490797545, 0.32515337423312884, 0.36809815950920244, 0.3619631901840491, 0.39263803680981596, 0.4171779141104294, 0.3987730061349693, 0.7607361963190185, 0.7975460122699386, 0.8098159509202454, 0.8834355828220859, 0.9079754601226994, 0.9386503067484663, 0.9447852760736196, 0.9202453987730062, 0.901840490797546, 0.8466257668711656, 0.803680981595092, 0.7975460122699386, 0.754601226993865, 0.6257668711656442, 0.6257668711656442, 0.3619631901840491, 0.3619631901840491, 0.3496932515337423, 0.34355828220858897, 0.3312883435582822, 0.3312883435582822, 0.3312883435582822, 0.32515337423312884, 0.3312883435582822, 0.3374233128834356, 0.3558282208588957, 0.36809815950920244, 0.36809815950920244, 0.36809815950920244, 0.36809815950920244, 0.37423312883435583, 0.37423312883435583, 0.36809815950920244, 0.3987730061349693, 0.4110429447852761, 0.44171779141104295, 0.7852760736196319, 0.7852760736196319, 0.803680981595092, 0.7914110429447853, 0.7791411042944786, 0.7607361963190185, 0.803680981595092, 0.6932515337423313, 0.5828220858895705, 0.44785276073619634, 0.4049079754601227, 0.37423312883435583, 0.3496932515337423, 0.3312883435582822, 0.31901840490797545, 0.2822085889570552, 0.25153374233128833, 0.25766871165644173, 0.25766871165644173, 0.25766871165644173, 0.25153374233128833, 0.2331288343558282, 0.2085889570552147, 0.22085889570552147, 0.2085889570552147, 0.1901840490797546, 0.17791411042944785, 0.18404907975460122, 0.15337423312883436, 0.13496932515337423, 0.12883435582822086, 0.12269938650306748, 0.12883435582822086, 0.13496932515337423, 0.11042944785276074, 0.9079754601226994, 0.9263803680981595, 0.9447852760736196, 0.9447852760736196, 0.9386503067484663, 0.9202453987730062, 0.8957055214723927, 0.09202453987730061, 0.09202453987730061, 0.09202453987730061, 0.09202453987730061, 0.09202453987730061, 0.09202453987730061, 0.09815950920245399, 0.09815950920245399, 0.10429447852760736, 0.10429447852760736, 0.09202453987730061, 0.09202453987730061, 0.09202453987730061, 0.09202453987730061, 0.09202453987730061, 0.09202453987730061, 0.09202453987730061, 0.09202453987730061, 0.09202453987730061, 0.10429447852760736, 0.11042944785276074, 0.11042944785276074, 0.15337423312883436, 0.22699386503067484], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/S8_pro-domain.gap.json b/pfam_gap_rates/S8_pro-domain.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..3300aa86f689a1c3428d6a0a743ee5a24299c0be
--- /dev/null
+++ b/pfam_gap_rates/S8_pro-domain.gap.json
@@ -0,0 +1 @@
+{"family": "S8_pro-domain", "n_seqs": 328, "length": 90, "gap_rates": [0.32926829268292684, 0.24085365853658536, 0.20121951219512196, 0.1951219512195122, 0.17682926829268292, 0.17378048780487804, 0.5762195121951219, 0.21646341463414634, 0.1798780487804878, 0.16463414634146342, 0.9054878048780488, 0.9146341463414634, 0.9359756097560976, 0.9420731707317073, 0.926829268292683, 0.9085365853658537, 0.8963414634146342, 0.15853658536585366, 0.15548780487804878, 0.13719512195121952, 0.8841463414634146, 0.13414634146341464, 0.13414634146341464, 0.13414634146341464, 0.13414634146341464, 0.13414634146341464, 0.13109756097560976, 0.13109756097560976, 0.13109756097560976, 0.12804878048780488, 0.12195121951219512, 0.11890243902439024, 0.10670731707317073, 0.10060975609756098, 0.09146341463414634, 0.08231707317073171, 0.04573170731707317, 0.039634146341463415, 0.25, 0.20121951219512196, 0.03048780487804878, 0.021341463414634148, 0.018292682926829267, 0.018292682926829267, 0.021341463414634148, 0.024390243902439025, 0.024390243902439025, 0.024390243902439025, 0.7042682926829268, 0.0975609756097561, 0.06097560975609756, 0.051829268292682924, 0.06097560975609756, 0.04878048780487805, 0.042682926829268296, 0.04573170731707317, 0.039634146341463415, 0.06402439024390244, 0.042682926829268296, 0.042682926829268296, 0.9420731707317073, 0.08536585365853659, 0.10365853658536585, 0.10975609756097561, 0.7042682926829268, 0.9420731707317073, 0.2774390243902439, 0.22560975609756098, 0.03353658536585366, 0.03353658536585366, 0.03353658536585366, 0.03353658536585366, 0.036585365853658534, 0.036585365853658534, 0.036585365853658534, 0.04573170731707317, 0.04573170731707317, 0.054878048780487805, 0.054878048780487805, 0.054878048780487805, 0.054878048780487805, 0.054878048780487805, 0.054878048780487805, 0.06097560975609756, 0.06402439024390244, 0.06402439024390244, 0.06707317073170732, 0.07926829268292683, 0.09451219512195122, 0.10365853658536585], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/SAM_MT.gap.json b/pfam_gap_rates/SAM_MT.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..535344a3fc066daec86c4c2b9a7b8f81dfa2838c
--- /dev/null
+++ b/pfam_gap_rates/SAM_MT.gap.json
@@ -0,0 +1 @@
+{"family": "SAM_MT", "n_seqs": 390, "length": 243, "gap_rates": [0.8717948717948718, 0.8666666666666667, 0.8538461538461538, 0.8435897435897436, 0.8358974358974359, 0.8256410256410256, 0.8153846153846154, 0.7769230769230769, 0.7333333333333333, 0.6641025641025641, 0.6076923076923076, 0.5615384615384615, 0.5282051282051282, 0.4897435897435897, 0.45897435897435895, 0.44871794871794873, 0.441025641025641, 0.43846153846153846, 0.4358974358974359, 0.4358974358974359, 0.43846153846153846, 0.4307692307692308, 0.4256410256410256, 0.4256410256410256, 0.4256410256410256, 0.4256410256410256, 0.4256410256410256, 0.43333333333333335, 0.43333333333333335, 0.43333333333333335, 0.43333333333333335, 0.4205128205128205, 0.46923076923076923, 0.5307692307692308, 0.48717948717948717, 0.3769230769230769, 0.36923076923076925, 0.3641025641025641, 0.3717948717948718, 0.36923076923076925, 0.33589743589743587, 0.32564102564102565, 0.32564102564102565, 0.3384615384615385, 0.3, 0.28974358974358977, 0.27692307692307694, 0.2641025641025641, 0.2564102564102564, 0.2128205128205128, 0.2743589743589744, 0.19743589743589743, 0.15384615384615385, 0.12564102564102564, 0.12307692307692308, 0.1358974358974359, 0.11794871794871795, 0.08974358974358974, 0.08461538461538462, 0.08205128205128205, 0.07948717948717948, 0.07948717948717948, 0.06923076923076923, 0.06923076923076923, 0.06923076923076923, 0.06666666666666667, 0.06923076923076923, 0.06923076923076923, 0.13076923076923078, 0.14102564102564102, 0.4282051282051282, 0.36153846153846153, 0.023076923076923078, 0.020512820512820513, 0.020512820512820513, 0.020512820512820513, 0.020512820512820513, 0.020512820512820513, 0.020512820512820513, 0.020512820512820513, 0.017948717948717947, 0.017948717948717947, 0.017948717948717947, 0.017948717948717947, 0.017948717948717947, 0.020512820512820513, 0.020512820512820513, 0.023076923076923078, 0.020512820512820513, 0.9051282051282051, 0.017948717948717947, 0.017948717948717947, 0.8307692307692308, 0.017948717948717947, 0.8615384615384616, 0.8564102564102564, 0.017948717948717947, 0.8717948717948718, 0.8589743589743589, 0.017948717948717947, 0.015384615384615385, 0.015384615384615385, 0.015384615384615385, 0.015384615384615385, 0.015384615384615385, 0.015384615384615385, 0.015384615384615385, 0.015384615384615385, 0.017948717948717947, 0.015384615384615385, 0.015384615384615385, 0.015384615384615385, 0.015384615384615385, 0.015384615384615385, 0.015384615384615385, 0.015384615384615385, 0.015384615384615385, 0.017948717948717947, 0.020512820512820513, 0.020512820512820513, 0.017948717948717947, 0.017948717948717947, 0.020512820512820513, 0.020512820512820513, 0.02564102564102564, 0.046153846153846156, 0.07435897435897436, 0.08205128205128205, 0.07948717948717948, 0.3923076923076923, 0.05128205128205128, 0.04358974358974359, 0.02564102564102564, 0.02564102564102564, 0.023076923076923078, 0.023076923076923078, 0.023076923076923078, 0.023076923076923078, 0.023076923076923078, 0.023076923076923078, 0.023076923076923078, 0.02564102564102564, 0.028205128205128206, 0.041025641025641026, 0.046153846153846156, 0.041025641025641026, 0.038461538461538464, 0.03333333333333333, 0.03076923076923077, 0.03076923076923077, 0.04871794871794872, 0.7589743589743589, 0.8846153846153846, 0.9102564102564102, 0.8461538461538461, 0.32051282051282054, 0.08717948717948718, 0.05128205128205128, 0.023076923076923078, 0.023076923076923078, 0.023076923076923078, 0.023076923076923078, 0.023076923076923078, 0.023076923076923078, 0.023076923076923078, 0.020512820512820513, 0.020512820512820513, 0.035897435897435895, 0.05641025641025641, 0.9487179487179487, 0.882051282051282, 0.06153846153846154, 0.06666666666666667, 0.06666666666666667, 0.06923076923076923, 0.07179487179487179, 0.15128205128205127, 0.2153846153846154, 0.2564102564102564, 0.19230769230769232, 0.12307692307692308, 0.08717948717948718, 0.06923076923076923, 0.0641025641025641, 0.07179487179487179, 0.0641025641025641, 0.06923076923076923, 0.07692307692307693, 0.07948717948717948, 0.07435897435897436, 0.06153846153846154, 0.05641025641025641, 0.05897435897435897, 0.9487179487179487, 0.05641025641025641, 0.06666666666666667, 0.06666666666666667, 0.0641025641025641, 0.07179487179487179, 0.05897435897435897, 0.05641025641025641, 0.05641025641025641, 0.05897435897435897, 0.05641025641025641, 0.05897435897435897, 0.05641025641025641, 0.05897435897435897, 0.07179487179487179, 0.05384615384615385, 0.05384615384615385, 0.05384615384615385, 0.05384615384615385, 0.05384615384615385, 0.05384615384615385, 0.08205128205128205, 0.15128205128205127, 0.18205128205128204, 0.20256410256410257, 0.23333333333333334, 0.25384615384615383, 0.28717948717948716, 0.29743589743589743, 0.37948717948717947, 0.36666666666666664, 0.36923076923076925, 0.3717948717948718, 0.3717948717948718, 0.37948717948717947, 0.38461538461538464, 0.38461538461538464, 0.38461538461538464, 0.38461538461538464, 0.38461538461538464, 0.38461538461538464, 0.3923076923076923, 0.39487179487179486, 0.4, 0.40512820512820513, 0.41025641025641024, 0.41025641025641024, 0.4358974358974359, 0.4666666666666667, 0.9358974358974359], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/SBF_like.gap.json b/pfam_gap_rates/SBF_like.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..63a54fde648e198e9946933bb603ecafd82582b0
--- /dev/null
+++ b/pfam_gap_rates/SBF_like.gap.json
@@ -0,0 +1 @@
+{"family": "SBF_like", "n_seqs": 584, "length": 373, "gap_rates": [0.5068493150684932, 0.2551369863013699, 0.16095890410958905, 0.1506849315068493, 0.1404109589041096, 0.136986301369863, 0.13184931506849315, 0.1284246575342466, 0.1267123287671233, 0.1267123287671233, 0.1284246575342466, 0.1267123287671233, 0.1267123287671233, 0.1267123287671233, 0.1267123287671233, 0.125, 0.125, 0.125, 0.125, 0.125, 0.125, 0.1232876712328767, 0.15924657534246575, 0.1695205479452055, 0.1695205479452055, 0.1404109589041096, 0.1284246575342466, 0.1695205479452055, 0.410958904109589, 0.559931506849315, 0.3373287671232877, 0.13356164383561644, 0.11815068493150685, 0.11986301369863013, 0.1113013698630137, 0.1095890410958904, 0.7842465753424658, 0.10787671232876712, 0.10102739726027397, 0.10102739726027397, 0.09417808219178082, 0.09417808219178082, 0.09246575342465753, 0.09417808219178082, 0.0958904109589041, 0.0958904109589041, 0.08732876712328767, 0.0821917808219178, 0.0839041095890411, 0.08047945205479452, 0.0821917808219178, 0.0821917808219178, 0.0821917808219178, 0.0821917808219178, 0.0821917808219178, 0.08047945205479452, 0.08047945205479452, 0.07876712328767123, 0.07705479452054795, 0.07363013698630137, 0.07363013698630137, 0.07363013698630137, 0.07191780821917808, 0.07191780821917808, 0.07191780821917808, 0.07191780821917808, 0.0702054794520548, 0.0702054794520548, 0.06678082191780822, 0.06506849315068493, 0.06506849315068493, 0.06335616438356165, 0.06335616438356165, 0.06335616438356165, 0.06335616438356165, 0.06335616438356165, 0.06335616438356165, 0.06335616438356165, 0.06678082191780822, 0.06335616438356165, 0.06335616438356165, 0.06335616438356165, 0.06506849315068493, 0.06506849315068493, 0.0702054794520548, 0.0684931506849315, 0.1695205479452055, 0.9383561643835616, 0.21575342465753425, 0.20034246575342465, 0.10102739726027397, 0.07363013698630137, 0.9315068493150684, 0.9434931506849316, 0.934931506849315, 0.9315068493150684, 0.0684931506849315, 0.06678082191780822, 0.9092465753424658, 0.9332191780821918, 0.8972602739726028, 0.06678082191780822, 0.06506849315068493, 0.06506849315068493, 0.06506849315068493, 0.06164383561643835, 0.06506849315068493, 0.06506849315068493, 0.059931506849315065, 0.05821917808219178, 0.05821917808219178, 0.05821917808219178, 0.05821917808219178, 0.05821917808219178, 0.06335616438356165, 0.06335616438356165, 0.06164383561643835, 0.06164383561643835, 0.0684931506849315, 0.07191780821917808, 0.07191780821917808, 0.06506849315068493, 0.06506849315068493, 0.06164383561643835, 0.06164383561643835, 0.059931506849315065, 0.05821917808219178, 0.05821917808219178, 0.05821917808219178, 0.05821917808219178, 0.06335616438356165, 0.06335616438356165, 0.06335616438356165, 0.06506849315068493, 0.06506849315068493, 0.06506849315068493, 0.06678082191780822, 0.06678082191780822, 0.06678082191780822, 0.06678082191780822, 0.06678082191780822, 0.06678082191780822, 0.06506849315068493, 0.06506849315068493, 0.06335616438356165, 0.06335616438356165, 0.06506849315068493, 0.06335616438356165, 0.06506849315068493, 0.06506849315068493, 0.06506849315068493, 0.06335616438356165, 0.06506849315068493, 0.06506849315068493, 0.06506849315068493, 0.06335616438356165, 0.8373287671232876, 0.8647260273972602, 0.886986301369863, 0.8921232876712328, 0.9092465753424658, 0.9486301369863014, 0.9212328767123288, 0.9075342465753424, 0.8904109589041096, 0.8801369863013698, 0.8561643835616438, 0.7534246575342466, 0.20034246575342465, 0.0958904109589041, 0.0684931506849315, 0.9092465753424658, 0.940068493150685, 0.946917808219178, 0.9417808219178082, 0.9315068493150684, 0.863013698630137, 0.06678082191780822, 0.0684931506849315, 0.08561643835616438, 0.07363013698630137, 0.0684931506849315, 0.07534246575342465, 0.09246575342465753, 0.0702054794520548, 0.1421232876712329, 0.0976027397260274, 0.11815068493150685, 0.06506849315068493, 0.06164383561643835, 0.06164383561643835, 0.06164383561643835, 0.06164383561643835, 0.06164383561643835, 0.06164383561643835, 0.06164383561643835, 0.06164383561643835, 0.06164383561643835, 0.059931506849315065, 0.059931506849315065, 0.06164383561643835, 0.06164383561643835, 0.06335616438356165, 0.0684931506849315, 0.07191780821917808, 0.07534246575342465, 0.07363013698630137, 0.07534246575342465, 0.07705479452054795, 0.9452054794520548, 0.07876712328767123, 0.08047945205479452, 0.11472602739726027, 0.10102739726027397, 0.08732876712328767, 0.10616438356164383, 0.910958904109589, 0.0958904109589041, 0.0839041095890411, 0.09246575342465753, 0.8681506849315068, 0.07876712328767123, 0.07876712328767123, 0.07876712328767123, 0.07705479452054795, 0.07705479452054795, 0.07705479452054795, 0.07705479452054795, 0.07705479452054795, 0.07705479452054795, 0.07363013698630137, 0.07363013698630137, 0.07363013698630137, 0.08047945205479452, 0.0821917808219178, 0.08561643835616438, 0.08904109589041095, 0.08561643835616438, 0.09075342465753425, 0.09417808219178082, 0.09075342465753425, 0.18835616438356165, 0.1797945205479452, 0.0958904109589041, 0.09246575342465753, 0.09417808219178082, 0.09417808219178082, 0.13184931506849315, 0.10616438356164383, 0.09075342465753425, 0.09246575342465753, 0.0976027397260274, 0.9297945205479452, 0.9092465753424658, 0.0976027397260274, 0.11815068493150685, 0.10273972602739725, 0.09246575342465753, 0.09417808219178082, 0.0976027397260274, 0.0976027397260274, 0.10616438356164383, 0.0958904109589041, 0.0958904109589041, 0.0976027397260274, 0.10445205479452055, 0.09417808219178082, 0.09417808219178082, 0.09417808219178082, 0.0976027397260274, 0.0976027397260274, 0.11815068493150685, 0.136986301369863, 0.12157534246575342, 0.10787671232876712, 0.11986301369863013, 0.1095890410958904, 0.10616438356164383, 0.10273972602739725, 0.10616438356164383, 0.10787671232876712, 0.1095890410958904, 0.10445205479452055, 0.827054794520548, 0.839041095890411, 0.8441780821917808, 0.8493150684931506, 0.8527397260273972, 0.886986301369863, 0.9006849315068494, 0.9246575342465754, 0.9263698630136986, 0.928082191780822, 0.928082191780822, 0.9366438356164384, 0.9383561643835616, 0.9366438356164384, 0.9315068493150684, 0.928082191780822, 0.9263698630136986, 0.9263698630136986, 0.9195205479452054, 0.8921232876712328, 0.886986301369863, 0.8493150684931506, 0.8441780821917808, 0.839041095890411, 0.8356164383561644, 0.8253424657534246, 0.0976027397260274, 0.09931506849315068, 0.0976027397260274, 0.0958904109589041, 0.0958904109589041, 0.09931506849315068, 0.09931506849315068, 0.09931506849315068, 0.09931506849315068, 0.0958904109589041, 0.10102739726027397, 0.10102739726027397, 0.10102739726027397, 0.10102739726027397, 0.10102739726027397, 0.10102739726027397, 0.09931506849315068, 0.09931506849315068, 0.09931506849315068, 0.0976027397260274, 0.09931506849315068, 0.0976027397260274, 0.10102739726027397, 0.09931506849315068, 0.09931506849315068, 0.09931506849315068, 0.10273972602739725, 0.10616438356164383, 0.10787671232876712, 0.11986301369863013, 0.11815068493150685, 0.2517123287671233, 0.4332191780821918, 0.9092465753424658, 0.8561643835616438, 0.1815068493150685, 0.12157534246575342, 0.11643835616438356, 0.10787671232876712, 0.10616438356164383, 0.10787671232876712, 0.10787671232876712, 0.11301369863013698, 0.1113013698630137, 0.1113013698630137, 0.1113013698630137, 0.11472602739726027, 0.11472602739726027, 0.11643835616438356, 0.11643835616438356, 0.11986301369863013, 0.1232876712328767, 0.1232876712328767, 0.1267123287671233, 0.13013698630136986, 0.13527397260273974, 0.136986301369863, 0.1404109589041096, 0.14897260273972604, 0.15753424657534246, 0.17123287671232876, 0.1917808219178082, 0.3424657534246575, 0.6883561643835616], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/SCFA_trans.gap.json b/pfam_gap_rates/SCFA_trans.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..7484bb22dc75790700bf9c14a3c1536812073a59
--- /dev/null
+++ b/pfam_gap_rates/SCFA_trans.gap.json
@@ -0,0 +1 @@
+{"family": "SCFA_trans", "n_seqs": 256, "length": 471, "gap_rates": [0.6953125, 0.46484375, 0.31640625, 0.24609375, 0.203125, 0.1875, 0.171875, 0.15234375, 0.12890625, 0.11328125, 0.109375, 0.10546875, 0.10546875, 0.09765625, 0.09765625, 0.09375, 0.0859375, 0.0859375, 0.0859375, 0.0859375, 0.0859375, 0.0859375, 0.0859375, 0.0859375, 0.0859375, 0.09375, 0.09375, 0.10546875, 0.109375, 0.08984375, 0.09375, 0.09765625, 0.09375, 0.09375, 0.0859375, 0.08984375, 0.1015625, 0.08984375, 0.08984375, 0.08984375, 0.08984375, 0.1015625, 0.0859375, 0.08203125, 0.078125, 0.9375, 0.9453125, 0.94921875, 0.9453125, 0.9375, 0.92578125, 0.078125, 0.078125, 0.078125, 0.078125, 0.078125, 0.078125, 0.078125, 0.078125, 0.078125, 0.078125, 0.07421875, 0.078125, 0.078125, 0.078125, 0.08203125, 0.08203125, 0.078125, 0.078125, 0.07421875, 0.07421875, 0.07421875, 0.07421875, 0.07421875, 0.07421875, 0.07421875, 0.078125, 0.078125, 0.078125, 0.078125, 0.078125, 0.078125, 0.078125, 0.078125, 0.078125, 0.078125, 0.078125, 0.078125, 0.078125, 0.078125, 0.078125, 0.078125, 0.078125, 0.078125, 0.078125, 0.078125, 0.078125, 0.078125, 0.078125, 0.078125, 0.078125, 0.078125, 0.078125, 0.078125, 0.078125, 0.078125, 0.078125, 0.078125, 0.078125, 0.078125, 0.078125, 0.078125, 0.078125, 0.078125, 0.078125, 0.078125, 0.078125, 0.078125, 0.078125, 0.078125, 0.078125, 0.08203125, 0.078125, 0.078125, 0.08203125, 0.078125, 0.08203125, 0.08203125, 0.08203125, 0.08203125, 0.08203125, 0.9453125, 0.9453125, 0.9453125, 0.08203125, 0.08203125, 0.08203125, 0.08203125, 0.08203125, 0.0859375, 0.1015625, 0.8359375, 0.16796875, 0.08984375, 0.08984375, 0.08984375, 0.08984375, 0.08984375, 0.08984375, 0.08984375, 0.08984375, 0.08984375, 0.08984375, 0.08984375, 0.08984375, 0.08984375, 0.0859375, 0.8046875, 0.0859375, 0.0859375, 0.09765625, 0.09765625, 0.0859375, 0.0859375, 0.0859375, 0.0859375, 0.0859375, 0.0859375, 0.0859375, 0.0859375, 0.0859375, 0.0859375, 0.0859375, 0.0859375, 0.0859375, 0.08984375, 0.08984375, 0.08984375, 0.1015625, 0.08984375, 0.09375, 0.08984375, 0.09765625, 0.1015625, 0.13671875, 0.71875, 0.88671875, 0.75390625, 0.61328125, 0.60546875, 0.53515625, 0.08984375, 0.08203125, 0.078125, 0.078125, 0.078125, 0.078125, 0.078125, 0.078125, 0.078125, 0.078125, 0.078125, 0.078125, 0.078125, 0.078125, 0.078125, 0.078125, 0.078125, 0.078125, 0.07421875, 0.078125, 0.08203125, 0.07421875, 0.07421875, 0.07421875, 0.07421875, 0.078125, 0.08203125, 0.07421875, 0.078125, 0.078125, 0.078125, 0.0859375, 0.09765625, 0.0859375, 0.1015625, 0.109375, 0.10546875, 0.12890625, 0.11328125, 0.1171875, 0.12109375, 0.125, 0.13671875, 0.94140625, 0.9453125, 0.92578125, 0.125, 0.12109375, 0.12109375, 0.13671875, 0.1484375, 0.13671875, 0.125, 0.1484375, 0.15625, 0.171875, 0.1640625, 0.1640625, 0.15625, 0.19140625, 0.66796875, 0.5078125, 0.296875, 0.22265625, 0.16015625, 0.08984375, 0.09375, 0.09375, 0.09375, 0.09375, 0.09375, 0.09765625, 0.09375, 0.08984375, 0.08203125, 0.078125, 0.08203125, 0.078125, 0.078125, 0.08203125, 0.08203125, 0.0859375, 0.08984375, 0.08984375, 0.08984375, 0.0859375, 0.0859375, 0.09375, 0.1015625, 0.109375, 0.09765625, 0.08984375, 0.08203125, 0.08203125, 0.0859375, 0.08203125, 0.07421875, 0.078125, 0.21875, 0.8203125, 0.87890625, 0.76953125, 0.0703125, 0.0703125, 0.0703125, 0.0703125, 0.0703125, 0.0703125, 0.0703125, 0.0703125, 0.0703125, 0.07421875, 0.07421875, 0.06640625, 0.06640625, 0.0703125, 0.0703125, 0.0703125, 0.0703125, 0.0703125, 0.0703125, 0.07421875, 0.07421875, 0.07421875, 0.07421875, 0.07421875, 0.07421875, 0.078125, 0.078125, 0.078125, 0.078125, 0.078125, 0.078125, 0.078125, 0.078125, 0.078125, 0.078125, 0.078125, 0.078125, 0.078125, 0.078125, 0.078125, 0.078125, 0.078125, 0.078125, 0.078125, 0.078125, 0.078125, 0.078125, 0.078125, 0.078125, 0.078125, 0.078125, 0.078125, 0.078125, 0.08984375, 0.10546875, 0.16015625, 0.8984375, 0.3046875, 0.40234375, 0.37890625, 0.66796875, 0.6328125, 0.44921875, 0.3515625, 0.3359375, 0.07421875, 0.0703125, 0.0703125, 0.0703125, 0.07421875, 0.0703125, 0.07421875, 0.07421875, 0.078125, 0.078125, 0.07421875, 0.07421875, 0.07421875, 0.07421875, 0.07421875, 0.0703125, 0.0703125, 0.0703125, 0.0703125, 0.0703125, 0.0703125, 0.0703125, 0.0703125, 0.0703125, 0.06640625, 0.06640625, 0.06640625, 0.06640625, 0.06640625, 0.06640625, 0.06640625, 0.06640625, 0.06640625, 0.06640625, 0.06640625, 0.06640625, 0.06640625, 0.06640625, 0.06640625, 0.06640625, 0.06640625, 0.0625, 0.06640625, 0.06640625, 0.06640625, 0.06640625, 0.06640625, 0.06640625, 0.06640625, 0.06640625, 0.06640625, 0.0703125, 0.0703125, 0.0703125, 0.0703125, 0.06640625, 0.06640625, 0.06640625, 0.06640625, 0.06640625, 0.06640625, 0.06640625, 0.06640625, 0.06640625, 0.06640625, 0.0703125, 0.06640625, 0.06640625, 0.06640625, 0.06640625, 0.06640625, 0.06640625, 0.06640625, 0.06640625, 0.06640625, 0.06640625, 0.06640625, 0.06640625, 0.06640625, 0.06640625, 0.06640625, 0.06640625, 0.06640625, 0.06640625, 0.06640625, 0.06640625, 0.06640625, 0.06640625, 0.06640625, 0.06640625, 0.06640625, 0.06640625, 0.06640625, 0.06640625, 0.06640625, 0.06640625, 0.06640625, 0.06640625, 0.06640625, 0.06640625, 0.07421875, 0.078125, 0.0703125, 0.08203125, 0.0859375, 0.08984375, 0.09765625, 0.10546875, 0.1484375, 0.20703125, 0.28125, 0.37109375, 0.640625], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/SCIFF.gap.json b/pfam_gap_rates/SCIFF.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..eeeec0fccfcf6299b8462748f6be5c4cba7a5e07
--- /dev/null
+++ b/pfam_gap_rates/SCIFF.gap.json
@@ -0,0 +1 @@
+{"family": "SCIFF", "n_seqs": 246, "length": 44, "gap_rates": [0.06097560975609756, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0040650406504065045, 0.0040650406504065045, 0.008130081300813009, 0.0040650406504065045, 0.0040650406504065045, 0.032520325203252036, 0.008130081300813009, 0.008130081300813009, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0040650406504065045, 0.2926829268292683], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/SCO1-SenC.gap.json b/pfam_gap_rates/SCO1-SenC.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..0ae089a70b7bb8f6f1fe29d48f9ca5f3b7563092
--- /dev/null
+++ b/pfam_gap_rates/SCO1-SenC.gap.json
@@ -0,0 +1 @@
+{"family": "SCO1-SenC", "n_seqs": 1818, "length": 185, "gap_rates": [0.9235423542354235, 0.9053905390539054, 0.88998899889989, 0.8811881188118812, 0.8668866886688669, 0.856985698569857, 0.8437843784378438, 0.8311331133113311, 0.8195819581958196, 0.8063806380638063, 0.7970297029702971, 0.7865786578657866, 0.7739273927392739, 0.8954895489548955, 0.9092409240924092, 0.9295929592959296, 0.9185918591859186, 0.9031903190319032, 0.8833883388338833, 0.7425742574257426, 0.7370737073707371, 0.724972497249725, 0.7090209020902091, 0.698019801980198, 0.6908690869086909, 0.6837183718371838, 0.6716171617161716, 0.6600660066006601, 0.647964796479648, 0.6303630363036303, 0.5764576457645765, 0.7975797579757976, 0.9004400440044005, 0.9460946094609461, 0.9295929592959296, 0.8674367436743674, 0.764026402640264, 0.47799779977997797, 0.43784378437843785, 0.3998899889988999, 0.35918591859185917, 0.30913091309130913, 0.24257425742574257, 0.16061606160616063, 0.12981298129812982, 0.11166116611661166, 0.0924092409240924, 0.08635863586358636, 0.08415841584158416, 0.08250825082508251, 0.07425742574257425, 0.0704070407040704, 0.07150715071507151, 0.07260726072607261, 0.06655665566556655, 0.06545654565456546, 0.061606160616061605, 0.058305830583058306, 0.0748074807480748, 0.06050605060506051, 0.04565456545654566, 0.040154015401540157, 0.03135313531353135, 0.030253025302530254, 0.025302530253025302, 0.022002200220022004, 0.020902090209020903, 0.020902090209020903, 0.02035203520352035, 0.02035203520352035, 0.019801980198019802, 0.019801980198019802, 0.019251925192519254, 0.019251925192519254, 0.019801980198019802, 0.0187018701870187, 0.0187018701870187, 0.019251925192519254, 0.0187018701870187, 0.02035203520352035, 0.019801980198019802, 0.019801980198019802, 0.0187018701870187, 0.018151815181518153, 0.0187018701870187, 0.019251925192519254, 0.020902090209020903, 0.020902090209020903, 0.02035203520352035, 0.019801980198019802, 0.02035203520352035, 0.0231023102310231, 0.026402640264026403, 0.033003300330033, 0.05555555555555555, 0.8080308030803081, 0.9257425742574258, 0.49064906490649063, 0.07975797579757976, 0.0517051705170517, 0.026402640264026403, 0.020902090209020903, 0.019251925192519254, 0.018151815181518153, 0.0176017601760176, 0.0176017601760176, 0.0176017601760176, 0.0176017601760176, 0.019251925192519254, 0.019251925192519254, 0.0242024202420242, 0.0242024202420242, 0.025302530253025302, 0.022552255225522552, 0.02145214521452145, 0.022552255225522552, 0.022002200220022004, 0.020902090209020903, 0.02145214521452145, 0.02145214521452145, 0.022002200220022004, 0.0231023102310231, 0.023652365236523653, 0.025302530253025302, 0.029152915291529153, 0.02585258525852585, 0.033003300330033, 0.035753575357535754, 0.0374037403740374, 0.0484048404840484, 0.04235423542354235, 0.040154015401540157, 0.0407040704070407, 0.0429042904290429, 0.0429042904290429, 0.046754675467546754, 0.0484048404840484, 0.0539053905390539, 0.05555555555555555, 0.057755775577557754, 0.05885588558855886, 0.05885588558855886, 0.061606160616061605, 0.0704070407040704, 0.07205720572057206, 0.07975797579757976, 0.09570957095709572, 0.10121012101210121, 0.09735973597359736, 0.0924092409240924, 0.09625962596259625, 0.10396039603960396, 0.10726072607260725, 0.11331133113311331, 0.12046204620462046, 0.1342134213421342, 0.5616061606160616, 0.3542354235423542, 0.20242024202420242, 0.17436743674367436, 0.15951595159515952, 0.15016501650165018, 0.13916391639163916, 0.13641364136413642, 0.13696369636963696, 0.13091309130913092, 0.12046204620462046, 0.12321232123212321, 0.1254125412541254, 0.12816281628162815, 0.12871287128712872, 0.13146314631463146, 0.1331133113311331, 0.13366336633663367, 0.13696369636963696, 0.14026402640264027, 0.15236523652365236, 0.16666666666666666, 0.17491749174917492, 0.21287128712871287, 0.3173817381738174, 0.39383938393839385, 0.4757975797579758, 0.5269526952695269, 0.8344334433443344], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/SDF.gap.json b/pfam_gap_rates/SDF.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..808cdaf59e08b7112c34316ee64d09e7944d7368
--- /dev/null
+++ b/pfam_gap_rates/SDF.gap.json
@@ -0,0 +1 @@
+{"family": "SDF", "n_seqs": 3532, "length": 479, "gap_rates": [0.48272933182332955, 0.35617214043035106, 0.24575311438278596, 0.19026047565118911, 0.16024915062287656, 0.14665911664779163, 0.14099660249150622, 0.1367497168742922, 0.1327859569648924, 0.13221970554926388, 0.1310872027180068, 0.1293884484711212, 0.1291053227633069, 0.12882219705549264, 0.1282559456398641, 0.12768969422423557, 0.12797281993204984, 0.5266138165345413, 0.5789920724801813, 0.6186296715741789, 0.739524348810872, 0.818233295583239, 0.921291053227633, 0.9464892412231031, 0.8541902604756512, 0.7885050962627407, 0.7114949037372593, 0.5988108720271801, 0.5404869762174406, 0.5067950169875425, 0.13250283125707815, 0.12372593431483579, 0.12315968289920724, 0.12372593431483579, 0.12315968289920724, 0.12231030577576443, 0.12004530011325028, 0.1180634201585504, 0.11778029445073612, 0.11749716874292186, 0.11749716874292186, 0.11579841449603624, 0.11579841449603624, 0.11551528878822197, 0.11494903737259343, 0.11466591166477916, 0.11325028312570781, 0.11325028312570781, 0.112400906002265, 0.112400906002265, 0.11268403171007928, 0.11211778029445074, 0.11041902604756512, 0.11013590033975085, 0.10985277463193659, 0.10928652321630804, 0.10900339750849378, 0.9139297848244621, 0.10843714609286523, 0.10702151755379388, 0.10645526613816535, 0.10588901472253681, 0.105039637599094, 0.10390713476783692, 0.10447338618346545, 0.10334088335220838, 0.10305775764439411, 0.10192525481313704, 0.10107587768969423, 0.10107587768969423, 0.22112117780294452, 0.39184597961494905, 0.1347678369195923, 0.10419026047565119, 0.10135900339750849, 0.10164212910532276, 0.10305775764439411, 0.10362400906002266, 0.10192525481313704, 0.10107587768969423, 0.10192525481313704, 0.10135900339750849, 0.10050962627406569, 0.10050962627406569, 0.10022650056625142, 0.09994337485843714, 0.09937712344280861, 0.09909399773499433, 0.09909399773499433, 0.09966024915062288, 0.09937712344280861, 0.09881087202718007, 0.09881087202718007, 0.09796149490373726, 0.09824462061155152, 0.09767836919592299, 0.09711211778029445, 0.09739524348810873, 0.09796149490373726, 0.09824462061155152, 0.09796149490373726, 0.0985277463193658, 0.09881087202718007, 0.09881087202718007, 0.09881087202718007, 0.09909399773499433, 0.11155152887882219, 0.10730464326160816, 0.5523782559456398, 0.6585503963759909, 0.7313137032842583, 0.8533408833522084, 0.9221404303510758, 0.9456398640996603, 0.9300679501698754, 0.8975084937712344, 0.7927519818799547, 0.6947904869762175, 0.6194790486976217, 0.5198187995469988, 0.4051528878822197, 0.3558890147225368, 0.24518686296715742, 0.14807474518686298, 0.12599093997734995, 0.12202718006795017, 0.12400906002265005, 0.11494903737259343, 0.1152321630804077, 0.11353340883352209, 0.11325028312570781, 0.11353340883352209, 0.11636466591166478, 0.11834654586636467, 0.12004530011325028, 0.15826727066817667, 0.1384484711211778, 0.13023782559456398, 0.12627406568516422, 0.12231030577576443, 0.10758776896942242, 0.10475651189127973, 0.10390713476783692, 0.10419026047565119, 0.10447338618346545, 0.10334088335220838, 0.10249150622876557, 0.10135900339750849, 0.10050962627406569, 0.11579841449603624, 0.10050962627406569, 0.10135900339750849, 0.10107587768969423, 0.19733861834654587, 0.1970554926387316, 0.19592298980747452, 0.19309173272933183, 0.19280860702151756, 0.9473386183465459, 0.9498867497168743, 0.9184597961494904, 0.192242355605889, 0.18799546998867497, 0.8672140430351076, 0.8691959229898075, 0.8700453001132503, 0.8703284258210645, 0.8731596828992072, 0.8759909399773499, 0.8825028312570782, 0.888731596828992, 0.8921291053227633, 0.8938278595696489, 0.8952434881087202, 0.8983578708946772, 0.8997734994337486, 0.9108154020385051, 0.9153454133635334, 0.9241223103057757, 0.9292185730464326, 0.9331823329558324, 0.9388448471121178, 0.9436579841449604, 0.9450736126840317, 0.9445073612684032, 0.9411098527746319, 0.9351642129105323, 0.9326160815402038, 0.9261041902604756, 0.9187429218573047, 0.912797281993205, 0.9077010192525481, 0.8986409966024915, 0.8983578708946772, 0.8938278595696489, 0.8935447338618346, 0.8890147225368064, 0.8881653454133636, 0.8765571913929785, 0.8751415628539071, 0.8708946772366931, 0.8700453001132503, 0.8691959229898075, 0.8680634201585504, 0.8657984144960362, 0.10135900339750849, 0.09796149490373726, 0.09711211778029445, 0.09541336353340883, 0.09371460928652321, 0.0928652321630804, 0.0928652321630804, 0.09314835787089468, 0.0928652321630804, 0.0928652321630804, 0.09258210645526614, 0.0928652321630804, 0.09229898074745187, 0.09258210645526614, 0.09201585503963759, 0.09229898074745187, 0.0928652321630804, 0.09343148357870895, 0.0928652321630804, 0.22140430351075877, 0.22366930917327293, 0.1514722536806342, 0.11749716874292186, 0.8686296715741789, 0.9091166477916195, 0.9011891279728199, 0.765855039637599, 0.10079275198187995, 0.09626274065685164, 0.09173272933182333, 0.09173272933182333, 0.09173272933182333, 0.09088335220838052, 0.09088335220838052, 0.09088335220838052, 0.09144960362400906, 0.0911664779161948, 0.09144960362400906, 0.09173272933182333, 0.09144960362400906, 0.09088335220838052, 0.09031710079275199, 0.09060022650056625, 0.09031710079275199, 0.08946772366930918, 0.08861834654586637, 0.08833522083805209, 0.08833522083805209, 0.08748584371460928, 0.08720271800679502, 0.9014722536806342, 0.09003397508493771, 0.09031710079275199, 0.09088335220838052, 0.0911664779161948, 0.0911664779161948, 0.0911664779161948, 0.09088335220838052, 0.0911664779161948, 0.0911664779161948, 0.09060022650056625, 0.09003397508493771, 0.09060022650056625, 0.0911664779161948, 0.09088335220838052, 0.09201585503963759, 0.09229898074745187, 0.8343714609286523, 0.09371460928652321, 0.09371460928652321, 0.9088335220838052, 0.8808040770101925, 0.09229898074745187, 0.09144960362400906, 0.0911664779161948, 0.09060022650056625, 0.08946772366930918, 0.9450736126840317, 0.08833522083805209, 0.08805209513023783, 0.08833522083805209, 0.08861834654586637, 0.08805209513023783, 0.08805209513023783, 0.08833522083805209, 0.08861834654586637, 0.08833522083805209, 0.08833522083805209, 0.08833522083805209, 0.08833522083805209, 0.08833522083805209, 0.08805209513023783, 0.08805209513023783, 0.1755379388448471, 0.1291053227633069, 0.09343148357870895, 0.08975084937712344, 0.08833522083805209, 0.08890147225368063, 0.08890147225368063, 0.08890147225368063, 0.09031710079275199, 0.11325028312570781, 0.10787089467723669, 0.3734428086070215, 0.09060022650056625, 0.08946772366930918, 0.09654586636466592, 0.11551528878822197, 0.08833522083805209, 0.08833522083805209, 0.08805209513023783, 0.08861834654586637, 0.08833522083805209, 0.9178935447338619, 0.08890147225368063, 0.08946772366930918, 0.08946772366930918, 0.08946772366930918, 0.08975084937712344, 0.09003397508493771, 0.09031710079275199, 0.09003397508493771, 0.09003397508493771, 0.08975084937712344, 0.09060022650056625, 0.0911664779161948, 0.09173272933182333, 0.09144960362400906, 0.0911664779161948, 0.09088335220838052, 0.09513023782559456, 0.09314835787089468, 0.09229898074745187, 0.09201585503963759, 0.09003397508493771, 0.09060022650056625, 0.0911664779161948, 0.09144960362400906, 0.0911664779161948, 0.09144960362400906, 0.09144960362400906, 0.09144960362400906, 0.09060022650056625, 0.09031710079275199, 0.4951868629671574, 0.1599660249150623, 0.08975084937712344, 0.0911664779161948, 0.08946772366930918, 0.09031710079275199, 0.08975084937712344, 0.08975084937712344, 0.0891845979614949, 0.08946772366930918, 0.09003397508493771, 0.09003397508493771, 0.08946772366930918, 0.09060022650056625, 0.09144960362400906, 0.09088335220838052, 0.09060022650056625, 0.08946772366930918, 0.08946772366930918, 0.08946772366930918, 0.08663646659116647, 0.08748584371460928, 0.08776896942242356, 0.08833522083805209, 0.8969422423556059, 0.09428086070215176, 0.0891845979614949, 0.0891845979614949, 0.09088335220838052, 0.09003397508493771, 0.09003397508493771, 0.09003397508493771, 0.09031710079275199, 0.09060022650056625, 0.09003397508493771, 0.09003397508493771, 0.08975084937712344, 0.0891845979614949, 0.09003397508493771, 0.08975084937712344, 0.08975084937712344, 0.08890147225368063, 0.08946772366930918, 0.9388448471121178, 0.08805209513023783, 0.08833522083805209, 0.9357304643261608, 0.08861834654586637, 0.08861834654586637, 0.08861834654586637, 0.08890147225368063, 0.0891845979614949, 0.08975084937712344, 0.08975084937712344, 0.09399773499433749, 0.09428086070215176, 0.09428086070215176, 0.09343148357870895, 0.09314835787089468, 0.09314835787089468, 0.09314835787089468, 0.09371460928652321, 0.09371460928652321, 0.09314835787089468, 0.0928652321630804, 0.09371460928652321, 0.09711211778029445, 0.09654586636466592, 0.09796149490373726, 0.13986409966024915, 0.10050962627406569, 0.09994337485843714, 0.09881087202718007, 0.09881087202718007, 0.09937712344280861, 0.9082672706681767, 0.09343148357870895, 0.09314835787089468, 0.09314835787089468, 0.09314835787089468, 0.09229898074745187, 0.09881087202718007, 0.09314835787089468, 0.0928652321630804, 0.1022083805209513, 0.9003397508493771, 0.09456398640996602, 0.09541336353340883, 0.9156285390713477, 0.9292185730464326, 0.9224235560588901, 0.888731596828992, 0.09456398640996602, 0.09711211778029445, 0.09399773499433749, 0.9388448471121178, 0.09428086070215176, 0.09428086070215176, 0.09428086070215176, 0.09428086070215176, 0.09456398640996602, 0.09513023782559456, 0.09541336353340883, 0.0956964892412231, 0.09541336353340883, 0.09597961494903737, 0.09711211778029445, 0.10419026047565119, 0.10532276330690826, 0.105039637599094, 0.105039637599094, 0.10447338618346545, 0.10447338618346545, 0.10588901472253681, 0.10617214043035107, 0.10730464326160816, 0.10843714609286523, 0.10985277463193659, 0.11041902604756512, 0.11070215175537938, 0.11126840317100793, 0.11296715741789354, 0.1143827859569649, 0.11778029445073612, 0.13052095130237826, 0.1664779161947905, 0.20469988674971687, 0.30266138165345413, 0.8221970554926388], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/SDH_alpha.gap.json b/pfam_gap_rates/SDH_alpha.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ea8ce91e140621cedffaf5da08ac34be7ab4317f
--- /dev/null
+++ b/pfam_gap_rates/SDH_alpha.gap.json
@@ -0,0 +1 @@
+{"family": "SDH_alpha", "n_seqs": 1747, "length": 401, "gap_rates": [0.9261591299370349, 0.53921007441328, 0.3714939896966228, 0.3354321694333143, 0.3016599885518031, 0.2867773325701202, 0.27819118488838007, 0.27361190612478536, 0.2701774470520893, 0.2678878076702919, 0.2621637092157985, 0.2610188895248998, 0.32054951345163135, 0.25987406983400113, 0.6393817973669147, 0.9267315397824842, 0.2879221522610189, 0.2661705781339439, 0.2650257584430452, 0.5598168288494562, 0.28334287349742415, 0.8019461934745278, 0.8775042930738409, 0.8918145392100744, 0.9061247853463079, 0.9107040641099027, 0.9181453921007441, 0.934745277618775, 0.9267315397824842, 0.9164281625643961, 0.9089868345735547, 0.9026903262736119, 0.8786491127647396, 0.8763594733829422, 0.17515741270749857, 0.8374356038923869, 0.8374356038923869, 0.8374356038923869, 0.8385804235832857, 0.840870062965083, 0.8431597023468803, 0.8460217515741271, 0.8517458500286205, 0.8557527189467659, 0.8620492272467086, 0.8666285060103034, 0.8689181453921008, 0.8723526044647968, 0.8763594733829422, 0.8815111619919863, 0.884373211219233, 0.886090440755581, 0.8872352604464797, 0.887807670291929, 0.8900973096737264, 0.8952489982827705, 0.8963938179736691, 0.8981110475100171, 0.8992558672009159, 0.9009730967372639, 0.9032627361190613, 0.9072696050372067, 0.9118488838008014, 0.9135661133371494, 0.9170005724098454, 0.9244419004006869, 0.9398969662278192, 0.9301659988551803, 0.9198626216370922, 0.9158557527189468, 0.9124212936462507, 0.9089868345735547, 0.9044075558099599, 0.9021179164281625, 0.8992558672009159, 0.8986834573554665, 0.8963938179736691, 0.8958214081282198, 0.8923869490555237, 0.8889524899828277, 0.8872352604464797, 0.8866628506010303, 0.8855180309101317, 0.8832283915283343, 0.8792215226101889, 0.8746422438465942, 0.8700629650829994, 0.8689181453921008, 0.8637664567830566, 0.8586147681740126, 0.8540354894104178, 0.8488838008013738, 0.8448769318832284, 0.8431597023468803, 0.8391528334287349, 0.8374356038923869, 0.8374356038923869, 0.8374356038923869, 0.8374356038923869, 0.10875787063537493, 0.09788208357183743, 0.08929593589009731, 0.08528906697195192, 0.08586147681740126, 0.24098454493417287, 0.23239839725243275, 0.07498568975386377, 0.06983400114481969, 0.06926159129937035, 0.06754436176302232, 0.06410990269032628, 0.15741270749856898, 0.057813394390383514, 0.05552375500858615, 0.05609616485403549, 0.05437893531768746, 0.05437893531768746, 0.053806525472238124, 0.053806525472238124, 0.2564396107613051, 0.25300515168860904, 0.25357756153405836, 0.07326846021751574, 0.5781339439038351, 0.5117344018317115, 0.5077275329135661, 0.49456210646823123, 0.18030910131654265, 0.35718374356038923, 0.05151688609044076, 0.05266170578133944, 0.053806525472238124, 0.227819118488838, 0.14882655981682885, 0.14710933028048082, 0.14882655981682885, 0.15855752718946767, 0.1551230681167716, 0.15970234688036633, 0.1511161991986262, 0.9267315397824842, 0.9473382942186606, 0.9089868345735547, 0.0835718374356039, 0.3983972524327418, 0.09673726388093876, 0.9232970807097882, 0.7859187178019462, 0.5512306811677161, 0.6433886662850601, 0.06754436176302232, 0.06067544361763022, 0.053806525472238124, 0.05037206639954207, 0.05037206639954207, 0.05037206639954207, 0.04579278763594734, 0.6422438465941614, 0.6428162564396107, 0.654836863194047, 0.659988551803091, 0.6880366342301087, 0.7366914710933028, 0.8088151116199198, 0.907842014882656, 0.9187178019461935, 0.9210074413279908, 0.9244419004006869, 0.9290211791642816, 0.933028048082427, 0.9301659988551803, 0.9267315397824842, 0.9227246708643388, 0.9187178019461935, 0.9170005724098454, 0.8923869490555237, 0.7756153405838581, 0.7183743560389239, 0.681740125930166, 0.654836863194047, 0.6525472238122496, 0.6428162564396107, 0.6410990269032627, 0.04636519748139668, 0.7218088151116199, 0.7727532913566113, 0.8494562106468231, 0.8958214081282198, 0.9152833428734974, 0.9370349170005724, 0.9353176874642244, 0.9032627361190613, 0.8803663423010876, 0.8088151116199198, 0.7458500286204923, 0.6863194046937607, 0.044647967945048654, 0.6754436176302232, 0.7435603892386949, 0.8654836863194046, 0.929593589009731, 0.7842014882655982, 0.705208929593589, 0.6708643388666286, 0.04293073840870063, 0.04178591871780195, 0.0412135088723526, 0.040641099026903264, 0.04006868918145392, 0.04006868918145392, 0.03949627933600458, 0.03949627933600458, 0.04006868918145392, 0.04006868918145392, 0.04006868918145392, 0.03949627933600458, 0.038923869490555235, 0.038923869490555235, 0.040641099026903264, 0.038923869490555235, 0.0383514596451059, 0.038923869490555235, 0.038923869490555235, 0.038923869490555235, 0.0383514596451059, 0.0383514596451059, 0.0383514596451059, 0.0383514596451059, 0.0383514596451059, 0.0383514596451059, 0.0383514596451059, 0.04006868918145392, 0.038923869490555235, 0.03949627933600458, 0.7910704064109902, 0.7910704064109902, 0.7882083571837436, 0.03949627933600458, 0.04006868918145392, 0.04006868918145392, 0.04006868918145392, 0.040641099026903264, 0.040641099026903264, 0.0412135088723526, 0.24613623354321695, 0.23239839725243275, 0.04293073840870063, 0.2140812821980538, 0.17172295363480253, 0.1797366914710933, 0.21236405266170577, 0.04178591871780195, 0.6101888952489983, 0.8145392100744133, 0.8551803091013166, 0.8443045220377791, 0.7601602747567258, 0.057240984544934176, 0.04178591871780195, 0.04235832856325129, 0.04235832856325129, 0.04178591871780195, 0.04178591871780195, 0.04178591871780195, 0.0412135088723526, 0.040641099026903264, 0.04006868918145392, 0.03949627933600458, 0.04006868918145392, 0.04006868918145392, 0.040641099026903264, 0.0412135088723526, 0.040641099026903264, 0.040641099026903264, 0.0412135088723526, 0.040641099026903264, 0.040641099026903264, 0.0412135088723526, 0.04178591871780195, 0.04235832856325129, 0.0412135088723526, 0.04293073840870063, 0.04350314825414997, 0.04350314825414997, 0.04293073840870063, 0.04579278763594734, 0.04178591871780195, 0.04178591871780195, 0.04178591871780195, 0.04235832856325129, 0.04293073840870063, 0.19232970807097882, 0.0412135088723526, 0.040641099026903264, 0.04178591871780195, 0.2621637092157985, 0.2615912993703492, 0.2564396107613051, 0.03663423010875787, 0.03720663995420721, 0.03606182026330853, 0.03606182026330853, 0.035489410417859184, 0.03606182026330853, 0.03606182026330853, 0.035489410417859184, 0.034917000572409845, 0.03434459072696051, 0.03606182026330853, 0.03606182026330853, 0.03663423010875787, 0.03606182026330853, 0.034917000572409845, 0.034917000572409845, 0.034917000572409845, 0.035489410417859184, 0.03434459072696051, 0.034917000572409845, 0.035489410417859184, 0.034917000572409845, 0.034917000572409845, 0.031482541499713794, 0.03205495134516314, 0.03262736119061248, 0.03205495134516314, 0.03205495134516314, 0.03262736119061248, 0.031482541499713794, 0.031482541499713794, 0.030910131654264452, 0.030910131654264452, 0.030910131654264452, 0.2552947910704064, 0.25300515168860904, 0.2524327418431597, 0.2524327418431597, 0.031482541499713794, 0.029765311963365768, 0.028620492272467088, 0.028620492272467088, 0.028620492272467088, 0.028620492272467088, 0.028048082427017746, 0.028048082427017746, 0.027475672581568404, 0.027475672581568404, 0.027475672581568404, 0.026903262736119062, 0.027475672581568404, 0.028048082427017746, 0.028048082427017746, 0.028620492272467088, 0.028620492272467088, 0.028620492272467088, 0.028620492272467088, 0.028620492272467088, 0.028620492272467088, 0.028620492272467088, 0.028620492272467088, 0.028620492272467088, 0.028620492272467088, 0.028620492272467088, 0.7796222095020034, 0.7847738981110475, 0.7693188322839153, 0.3005151688609044, 0.3039496279336005, 0.45506582713222665, 0.03205495134516314, 0.030910131654264452, 0.030910131654264452, 0.030910131654264452, 0.030910131654264452, 0.2467086433886663, 0.031482541499713794, 0.031482541499713794, 0.031482541499713794, 0.031482541499713794, 0.031482541499713794, 0.03205495134516314, 0.03205495134516314, 0.03205495134516314, 0.03319977103606182, 0.03434459072696051, 0.03434459072696051, 0.034917000572409845, 0.035489410417859184, 0.03606182026330853, 0.03606182026330853, 0.03663423010875787, 0.03663423010875787, 0.038923869490555235, 0.040641099026903264, 0.040641099026903264, 0.040641099026903264, 0.04350314825414997, 0.044075558099599316, 0.04693760732684602, 0.05037206639954207, 0.05495134516313681, 0.22610188895248998], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/SDH_beta.gap.json b/pfam_gap_rates/SDH_beta.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..236e6bb1ca91fc0fc8fc405a6c1ac36e3fbecb00
--- /dev/null
+++ b/pfam_gap_rates/SDH_beta.gap.json
@@ -0,0 +1 @@
+{"family": "SDH_beta", "n_seqs": 1412, "length": 155, "gap_rates": [0.33640226628895187, 0.28257790368271957, 0.24787535410764872, 0.23512747875354106, 0.22875354107648727, 0.22875354107648727, 0.8151558073654391, 0.21742209631728046, 0.14660056657223797, 0.13385269121813032, 0.10339943342776203, 0.10269121813031161, 0.10269121813031161, 0.10269121813031161, 0.10269121813031161, 0.10198300283286119, 0.10198300283286119, 0.10198300283286119, 0.09985835694050992, 0.09985835694050992, 0.09915014164305949, 0.09206798866855524, 0.09206798866855524, 0.09206798866855524, 0.09206798866855524, 0.09844192634560907, 0.10056657223796034, 0.11402266288951841, 0.10198300283286119, 0.10127478753541076, 0.10056657223796034, 0.09985835694050992, 0.11331444759206799, 0.2131728045325779, 0.5524079320113314, 0.5658640226628895, 0.5311614730878187, 0.4702549575070821, 0.3895184135977337, 0.2075070821529745, 0.12110481586402266, 0.10835694050991501, 0.09915014164305949, 0.09631728045325778, 0.09490084985835694, 0.09419263456090651, 0.09419263456090651, 0.09490084985835694, 0.09490084985835694, 0.09560906515580736, 0.09560906515580736, 0.09702549575070822, 0.09560906515580736, 0.09490084985835694, 0.09419263456090651, 0.09419263456090651, 0.09348441926345609, 0.09419263456090651, 0.09348441926345609, 0.09348441926345609, 0.09348441926345609, 0.09490084985835694, 0.09773371104815864, 0.10835694050991501, 0.11118980169971672, 0.1274787535410765, 0.1395184135977337, 0.14660056657223797, 0.14801699716713881, 0.1565155807365439, 0.16572237960339944, 0.1678470254957507, 0.17492917847025496, 0.19971671388101983, 0.21954674220963172, 0.24079320113314448, 0.28895184135977336, 0.30807365439093487, 0.3236543909348442, 0.3413597733711048, 0.3562322946175637, 0.37322946175637395, 0.38526912181303113, 0.39943342776203966, 0.4086402266288952, 0.415014164305949, 0.4206798866855524, 0.4213881019830028, 0.4426345609065156, 0.4447592067988669, 0.448300283286119, 0.45963172804532576, 0.45892351274787535, 0.45396600566572237, 0.45396600566572237, 0.4631728045325779, 0.4681303116147309, 0.46671388101983, 0.4794617563739377, 0.4943342776203966, 0.509915014164306, 0.4830028328611898, 0.471671388101983, 0.4702549575070821, 0.4695467422096317, 0.4688385269121813, 0.46458923512747874, 0.4468838526912181, 0.5084985835694051, 0.4228045325779037, 0.4157223796033994, 0.4143059490084986, 0.40722379603399433, 0.4065155807365439, 0.3973087818696884, 0.3944759206798867, 0.5007082152974505, 0.37960339943342775, 0.37747875354107646, 0.37747875354107646, 0.37677053824362605, 0.37606232294617564, 0.37606232294617564, 0.37606232294617564, 0.37606232294617564, 0.37464589235127477, 0.37535410764872523, 0.37677053824362605, 0.37889518413597734, 0.37960339943342775, 0.3810198300283286, 0.38526912181303113, 0.386685552407932, 0.3881019830028329, 0.3951841359773371, 0.5630311614730878, 0.42776203966005666, 0.40084985835694054, 0.3881019830028329, 0.3881019830028329, 0.3881019830028329, 0.3873937677053824, 0.3873937677053824, 0.3873937677053824, 0.3873937677053824, 0.3873937677053824, 0.3873937677053824, 0.3873937677053824, 0.3873937677053824, 0.3937677053824363, 0.3951841359773371, 0.415014164305949, 0.4518413597733711, 0.5042492917847026, 0.6628895184135978], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/SEA.gap.json b/pfam_gap_rates/SEA.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..978b66174ba3952ae3ccf76b1bfab94a32926e89
--- /dev/null
+++ b/pfam_gap_rates/SEA.gap.json
@@ -0,0 +1 @@
+{"family": "SEA", "n_seqs": 751, "length": 118, "gap_rates": [0.8788282290279628, 0.5525965379494008, 0.374167776298269, 0.28761651131824234, 0.17842876165113183, 0.15978695073235685, 0.1478029294274301, 0.14247669773635152, 0.13049267643142476, 0.1278295605858855, 0.9280958721704394, 0.118508655126498, 0.9267643142476698, 0.05725699067909454, 0.03861517976031957, 0.023968042609853527, 0.022636484687083888, 0.019973368841544607, 0.02130492676431425, 0.018641810918774968, 0.017310252996005325, 0.013315579227696404, 0.018641810918774968, 0.013315579227696404, 0.011984021304926764, 0.011984021304926764, 0.010652463382157125, 0.010652463382157125, 0.010652463382157125, 0.011984021304926764, 0.011984021304926764, 0.010652463382157125, 0.009320905459387484, 0.009320905459387484, 0.010652463382157125, 0.011984021304926764, 0.009320905459387484, 0.006657789613848202, 0.005326231691078562, 0.0039946737683089215, 0.007989347536617843, 0.0039946737683089215, 0.0013315579227696406, 0.0013315579227696406, 0.9414114513981359, 0.19307589880159787, 0.16245006657789615, 0.17177097203728361, 0.8948069241011984, 0.09986684420772303, 0.19573901464713714, 0.037283621837549935, 0.015978695073235686, 0.007989347536617843, 0.009320905459387484, 0.007989347536617843, 0.005326231691078562, 0.005326231691078562, 0.005326231691078562, 0.006657789613848202, 0.006657789613848202, 0.006657789613848202, 0.009320905459387484, 0.9267643142476698, 0.017310252996005325, 0.02529960053262317, 0.02529960053262317, 0.748335552596538, 0.9387483355525965, 0.9494007989347537, 0.933422103861518, 0.6830892143808256, 0.5352862849533955, 0.5099866844207723, 0.0426098535286285, 0.03994673768308921, 0.03195739014647137, 0.03195739014647137, 0.03195739014647137, 0.03462050599201065, 0.03462050599201065, 0.037283621837549935, 0.041278295605858856, 0.045272969374167776, 0.05725699067909454, 0.05992010652463382, 0.07723035952063914, 0.09320905459387484, 0.5392809587217043, 0.2929427430093209, 0.2623169107856192, 0.2197070572569907, 0.22769640479360853, 0.2237017310252996, 0.22636484687083888, 0.23568575233022637, 0.2436750998668442, 0.255659121171771, 0.27163781624500666, 0.2969374167776298, 0.3155792276964048, 0.3382157123834887, 0.796271637816245, 0.7816245006657789, 0.42609853528628494, 0.43275632490013316, 0.44607190412782954, 0.46604527296937415, 0.47536617842876167, 0.49533954727030627, 0.5233022636484687, 0.5525965379494008, 0.5778961384820239, 0.6031957390146472, 0.6324900133155792, 0.6617842876165113, 0.7350199733688415, 0.7802929427430093], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/SEN1_N.gap.json b/pfam_gap_rates/SEN1_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..71390709a37bf6bb71511b7661bdd8b575aa3963
--- /dev/null
+++ b/pfam_gap_rates/SEN1_N.gap.json
@@ -0,0 +1 @@
+{"family": "SEN1_N", "n_seqs": 182, "length": 892, "gap_rates": [0.6758241758241759, 0.3901098901098901, 0.2802197802197802, 0.23076923076923078, 0.21428571428571427, 0.2032967032967033, 0.1978021978021978, 0.1978021978021978, 0.19230769230769232, 0.19230769230769232, 0.1813186813186813, 0.17582417582417584, 0.17582417582417584, 0.17582417582417584, 0.17582417582417584, 0.17032967032967034, 0.17032967032967034, 0.15934065934065933, 0.15934065934065933, 0.15934065934065933, 0.15934065934065933, 0.15934065934065933, 0.15934065934065933, 0.16483516483516483, 0.17032967032967034, 0.17582417582417584, 0.1813186813186813, 0.17582417582417584, 0.1813186813186813, 0.17032967032967034, 0.17032967032967034, 0.8846153846153846, 0.2087912087912088, 0.24175824175824176, 0.22527472527472528, 0.8956043956043956, 0.22527472527472528, 0.2032967032967033, 0.17032967032967034, 0.16483516483516483, 0.15934065934065933, 0.15384615384615385, 0.15384615384615385, 0.15384615384615385, 0.15384615384615385, 0.15384615384615385, 0.15384615384615385, 0.14835164835164835, 0.14835164835164835, 0.14835164835164835, 0.14835164835164835, 0.14835164835164835, 0.14835164835164835, 0.14835164835164835, 0.14835164835164835, 0.14835164835164835, 0.14835164835164835, 0.14835164835164835, 0.15384615384615385, 0.15934065934065933, 0.15934065934065933, 0.15384615384615385, 0.4725274725274725, 0.4835164835164835, 0.4945054945054945, 0.489010989010989, 0.41208791208791207, 0.7362637362637363, 0.7912087912087912, 0.8791208791208791, 0.7912087912087912, 0.6923076923076923, 0.41208791208791207, 0.44505494505494503, 0.46703296703296704, 0.36813186813186816, 0.32967032967032966, 0.47802197802197804, 0.4065934065934066, 0.3901098901098901, 0.2802197802197802, 0.25274725274725274, 0.24725274725274726, 0.2802197802197802, 0.24175824175824176, 0.22527472527472528, 0.15384615384615385, 0.14285714285714285, 0.14285714285714285, 0.14285714285714285, 0.13186813186813187, 0.13186813186813187, 0.13186813186813187, 0.13186813186813187, 0.13186813186813187, 0.13186813186813187, 0.13186813186813187, 0.13186813186813187, 0.13186813186813187, 0.13186813186813187, 0.13186813186813187, 0.13186813186813187, 0.13186813186813187, 0.13186813186813187, 0.5659340659340659, 0.13736263736263737, 0.14285714285714285, 0.14835164835164835, 0.14835164835164835, 0.14835164835164835, 0.15384615384615385, 0.15384615384615385, 0.15384615384615385, 0.15384615384615385, 0.15384615384615385, 0.15384615384615385, 0.15384615384615385, 0.15384615384615385, 0.17582417582417584, 0.17582417582417584, 0.17582417582417584, 0.17032967032967034, 0.16483516483516483, 0.41208791208791207, 0.16483516483516483, 0.16483516483516483, 0.32967032967032966, 0.17582417582417584, 0.21428571428571427, 0.21428571428571427, 0.3021978021978022, 0.2802197802197802, 0.7252747252747253, 0.9175824175824175, 0.6098901098901099, 0.15934065934065933, 0.15384615384615385, 0.14835164835164835, 0.14835164835164835, 0.14285714285714285, 0.14285714285714285, 0.14285714285714285, 0.14285714285714285, 0.14285714285714285, 0.14285714285714285, 0.14285714285714285, 0.14285714285714285, 0.14285714285714285, 0.1813186813186813, 0.21428571428571427, 0.19230769230769232, 0.16483516483516483, 0.15934065934065933, 0.8956043956043956, 0.8076923076923077, 0.15934065934065933, 0.15934065934065933, 0.15934065934065933, 0.16483516483516483, 0.16483516483516483, 0.15934065934065933, 0.17582417582417584, 0.17582417582417584, 0.7802197802197802, 0.2032967032967033, 0.17582417582417584, 0.17582417582417584, 0.18681318681318682, 0.18681318681318682, 0.1813186813186813, 0.17582417582417584, 0.21428571428571427, 0.1978021978021978, 0.19230769230769232, 0.18681318681318682, 0.19230769230769232, 0.1978021978021978, 0.18681318681318682, 0.19230769230769232, 0.19230769230769232, 0.18681318681318682, 0.17582417582417584, 0.17582417582417584, 0.17582417582417584, 0.1813186813186813, 0.17582417582417584, 0.21978021978021978, 0.18681318681318682, 0.19230769230769232, 0.19230769230769232, 0.19230769230769232, 0.2857142857142857, 0.23076923076923078, 0.6318681318681318, 0.8241758241758241, 0.9285714285714286, 0.8956043956043956, 0.7417582417582418, 0.43956043956043955, 0.21978021978021978, 0.41208791208791207, 0.4010989010989011, 0.43956043956043955, 0.4725274725274725, 0.5439560439560439, 0.6593406593406593, 0.7087912087912088, 0.7912087912087912, 0.8296703296703297, 0.8571428571428571, 0.8791208791208791, 0.8901098901098901, 0.9065934065934066, 0.9285714285714286, 0.945054945054945, 0.9285714285714286, 0.9230769230769231, 0.8956043956043956, 0.8846153846153846, 0.8791208791208791, 0.8406593406593407, 0.8186813186813187, 0.7527472527472527, 0.6923076923076923, 0.5659340659340659, 0.5, 0.41208791208791207, 0.19230769230769232, 0.19230769230769232, 0.19230769230769232, 0.18681318681318682, 0.18681318681318682, 0.18681318681318682, 0.18681318681318682, 0.1813186813186813, 0.1813186813186813, 0.1813186813186813, 0.1813186813186813, 0.1813186813186813, 0.1813186813186813, 0.18681318681318682, 0.2032967032967033, 0.1978021978021978, 0.2032967032967033, 0.2087912087912088, 0.2032967032967033, 0.19230769230769232, 0.2032967032967033, 0.21978021978021978, 0.21978021978021978, 0.21978021978021978, 0.22527472527472528, 0.23626373626373626, 0.8406593406593407, 0.8571428571428571, 0.9010989010989011, 0.9065934065934066, 0.9010989010989011, 0.8901098901098901, 0.8406593406593407, 0.8186813186813187, 0.26373626373626374, 0.32967032967032966, 0.3021978021978022, 0.6373626373626373, 0.5879120879120879, 0.7417582417582418, 0.7032967032967034, 0.6538461538461539, 0.2032967032967033, 0.1813186813186813, 0.1813186813186813, 0.1813186813186813, 0.1813186813186813, 0.17582417582417584, 0.17582417582417584, 0.17582417582417584, 0.17582417582417584, 0.18681318681318682, 0.1813186813186813, 0.1813186813186813, 0.1813186813186813, 0.5879120879120879, 0.8241758241758241, 0.1813186813186813, 0.1813186813186813, 0.1813186813186813, 0.1813186813186813, 0.1813186813186813, 0.1813186813186813, 0.1813186813186813, 0.1813186813186813, 0.1813186813186813, 0.1813186813186813, 0.1813186813186813, 0.1813186813186813, 0.1813186813186813, 0.1813186813186813, 0.1813186813186813, 0.17582417582417584, 0.18681318681318682, 0.17582417582417584, 0.17582417582417584, 0.1813186813186813, 0.19230769230769232, 0.1978021978021978, 0.1978021978021978, 0.1978021978021978, 0.26373626373626374, 0.2967032967032967, 0.21428571428571427, 0.23076923076923078, 0.22527472527472528, 0.24725274725274726, 0.23076923076923078, 0.21978021978021978, 0.21428571428571427, 0.2087912087912088, 0.2032967032967033, 0.1978021978021978, 0.1978021978021978, 0.1978021978021978, 0.1978021978021978, 0.1978021978021978, 0.21428571428571427, 0.23076923076923078, 0.23076923076923078, 0.22527472527472528, 0.23076923076923078, 0.23076923076923078, 0.23076923076923078, 0.22527472527472528, 0.22527472527472528, 0.22527472527472528, 0.22527472527472528, 0.26373626373626374, 0.2692307692307692, 0.24175824175824176, 0.34615384615384615, 0.33516483516483514, 0.31868131868131866, 0.34065934065934067, 0.3791208791208791, 0.4230769230769231, 0.4835164835164835, 0.9285714285714286, 0.5604395604395604, 0.6978021978021978, 0.6428571428571429, 0.6648351648351648, 0.8131868131868132, 0.8626373626373627, 0.8846153846153846, 0.9120879120879121, 0.9285714285714286, 0.945054945054945, 0.945054945054945, 0.9395604395604396, 0.9175824175824175, 0.9065934065934066, 0.8791208791208791, 0.8461538461538461, 0.7582417582417582, 0.41208791208791207, 0.35714285714285715, 0.25274725274725274, 0.25274725274725274, 0.25274725274725274, 0.25274725274725274, 0.25274725274725274, 0.25274725274725274, 0.25824175824175827, 0.25824175824175827, 0.25824175824175827, 0.25824175824175827, 0.25824175824175827, 0.25824175824175827, 0.8901098901098901, 0.9395604395604396, 0.7197802197802198, 0.26373626373626374, 0.2802197802197802, 0.2802197802197802, 0.2802197802197802, 0.2802197802197802, 0.2802197802197802, 0.2802197802197802, 0.2802197802197802, 0.2802197802197802, 0.2802197802197802, 0.2802197802197802, 0.2802197802197802, 0.2802197802197802, 0.2802197802197802, 0.29120879120879123, 0.2802197802197802, 0.2857142857142857, 0.2802197802197802, 0.2857142857142857, 0.2857142857142857, 0.2857142857142857, 0.2857142857142857, 0.3076923076923077, 0.3076923076923077, 0.3076923076923077, 0.5164835164835165, 0.532967032967033, 0.7197802197802198, 0.6098901098901099, 0.6043956043956044, 0.34615384615384615, 0.31868131868131866, 0.3021978021978022, 0.2967032967032967, 0.2967032967032967, 0.2967032967032967, 0.3021978021978022, 0.2967032967032967, 0.29120879120879123, 0.29120879120879123, 0.29120879120879123, 0.2967032967032967, 0.2967032967032967, 0.2967032967032967, 0.2967032967032967, 0.3021978021978022, 0.4835164835164835, 0.4835164835164835, 0.46153846153846156, 0.45054945054945056, 0.43956043956043955, 0.42857142857142855, 0.42857142857142855, 0.42857142857142855, 0.4175824175824176, 0.6318681318681318, 0.4835164835164835, 0.4835164835164835, 0.5769230769230769, 0.521978021978022, 0.5054945054945055, 0.45054945054945056, 0.42857142857142855, 0.4175824175824176, 0.3241758241758242, 0.3241758241758242, 0.31868131868131866, 0.31868131868131866, 0.3076923076923077, 0.3076923076923077, 0.3076923076923077, 0.3131868131868132, 0.3131868131868132, 0.6978021978021978, 0.6868131868131868, 0.6923076923076923, 0.9285714285714286, 0.9065934065934066, 0.5164835164835165, 0.4835164835164835, 0.4725274725274725, 0.8241758241758241, 0.3076923076923077, 0.3076923076923077, 0.2967032967032967, 0.2967032967032967, 0.2967032967032967, 0.2967032967032967, 0.6593406593406593, 0.3131868131868132, 0.3076923076923077, 0.34615384615384615, 0.9340659340659341, 0.9340659340659341, 0.9230769230769231, 0.37362637362637363, 0.3901098901098901, 0.38461538461538464, 0.41208791208791207, 0.9230769230769231, 0.46703296703296704, 0.9120879120879121, 0.9230769230769231, 0.8901098901098901, 0.4230769230769231, 0.3901098901098901, 0.3021978021978022, 0.2857142857142857, 0.2802197802197802, 0.2802197802197802, 0.2802197802197802, 0.2802197802197802, 0.2802197802197802, 0.27472527472527475, 0.27472527472527475, 0.27472527472527475, 0.27472527472527475, 0.27472527472527475, 0.27472527472527475, 0.27472527472527475, 0.2692307692307692, 0.2692307692307692, 0.2692307692307692, 0.2692307692307692, 0.2692307692307692, 0.2692307692307692, 0.2692307692307692, 0.2692307692307692, 0.2692307692307692, 0.2692307692307692, 0.2692307692307692, 0.2692307692307692, 0.2692307692307692, 0.2692307692307692, 0.2692307692307692, 0.2692307692307692, 0.2692307692307692, 0.2692307692307692, 0.2692307692307692, 0.2692307692307692, 0.2857142857142857, 0.2692307692307692, 0.6813186813186813, 0.8076923076923077, 0.8241758241758241, 0.8461538461538461, 0.8626373626373627, 0.9285714285714286, 0.945054945054945, 0.945054945054945, 0.9340659340659341, 0.9065934065934066, 0.8516483516483516, 0.8406593406593407, 0.8186813186813187, 0.7802197802197802, 0.7032967032967034, 0.3901098901098901, 0.3626373626373626, 0.3516483516483517, 0.35714285714285715, 0.36813186813186816, 0.36813186813186816, 0.9395604395604396, 0.47802197802197804, 0.38461538461538464, 0.9010989010989011, 0.9065934065934066, 0.9340659340659341, 0.9395604395604396, 0.9065934065934066, 0.9065934065934066, 0.9010989010989011, 0.26373626373626374, 0.26373626373626374, 0.26373626373626374, 0.26373626373626374, 0.26373626373626374, 0.26373626373626374, 0.2692307692307692, 0.2692307692307692, 0.26373626373626374, 0.26373626373626374, 0.9175824175824175, 0.9175824175824175, 0.26373626373626374, 0.2692307692307692, 0.2692307692307692, 0.2967032967032967, 0.2692307692307692, 0.26373626373626374, 0.8956043956043956, 0.945054945054945, 0.8846153846153846, 0.2857142857142857, 0.2692307692307692, 0.2692307692307692, 0.26373626373626374, 0.8736263736263736, 0.26373626373626374, 0.26373626373626374, 0.26373626373626374, 0.26373626373626374, 0.26373626373626374, 0.26373626373626374, 0.26373626373626374, 0.26373626373626374, 0.26373626373626374, 0.26373626373626374, 0.26373626373626374, 0.26373626373626374, 0.26373626373626374, 0.26373626373626374, 0.26373626373626374, 0.8846153846153846, 0.9065934065934066, 0.9120879120879121, 0.945054945054945, 0.9285714285714286, 0.9065934065934066, 0.9065934065934066, 0.8791208791208791, 0.2692307692307692, 0.3076923076923077, 0.3076923076923077, 0.34065934065934067, 0.5384615384615384, 0.42857142857142855, 0.38461538461538464, 0.8956043956043956, 0.6098901098901099, 0.6208791208791209, 0.510989010989011, 0.8186813186813187, 0.8571428571428571, 0.8846153846153846, 0.9120879120879121, 0.9395604395604396, 0.9010989010989011, 0.8736263736263736, 0.8461538461538461, 0.8186813186813187, 0.3626373626373626, 0.34615384615384615, 0.3241758241758242, 0.31868131868131866, 0.3021978021978022, 0.2967032967032967, 0.2967032967032967, 0.2967032967032967, 0.2857142857142857, 0.2857142857142857, 0.2857142857142857, 0.2857142857142857, 0.2857142857142857, 0.2857142857142857, 0.2857142857142857, 0.2857142857142857, 0.2857142857142857, 0.2857142857142857, 0.2857142857142857, 0.2857142857142857, 0.2857142857142857, 0.2857142857142857, 0.2857142857142857, 0.2857142857142857, 0.2857142857142857, 0.2857142857142857, 0.2857142857142857, 0.2857142857142857, 0.2857142857142857, 0.41208791208791207, 0.2857142857142857, 0.6538461538461539, 0.29120879120879123, 0.2857142857142857, 0.2857142857142857, 0.2802197802197802, 0.2802197802197802, 0.29120879120879123, 0.29120879120879123, 0.29120879120879123, 0.3131868131868132, 0.3076923076923077, 0.945054945054945, 0.2802197802197802, 0.2802197802197802, 0.2857142857142857, 0.2857142857142857, 0.2857142857142857, 0.2857142857142857, 0.2802197802197802, 0.2802197802197802, 0.2802197802197802, 0.2802197802197802, 0.2802197802197802, 0.2802197802197802, 0.2802197802197802, 0.2802197802197802, 0.2802197802197802, 0.2802197802197802, 0.2802197802197802, 0.3021978021978022, 0.3021978021978022, 0.2802197802197802, 0.2802197802197802, 0.2802197802197802, 0.2857142857142857, 0.29120879120879123, 0.2802197802197802, 0.29120879120879123, 0.29120879120879123, 0.2967032967032967, 0.2967032967032967, 0.2857142857142857, 0.27472527472527475, 0.2802197802197802, 0.2857142857142857, 0.2857142857142857, 0.2857142857142857, 0.2857142857142857, 0.2857142857142857, 0.2857142857142857, 0.2857142857142857, 0.2857142857142857, 0.2857142857142857, 0.2857142857142857, 0.2857142857142857, 0.2857142857142857, 0.2857142857142857, 0.2857142857142857, 0.2857142857142857, 0.29120879120879123, 0.2857142857142857, 0.2857142857142857, 0.2857142857142857, 0.2857142857142857, 0.2857142857142857, 0.2857142857142857, 0.2857142857142857, 0.2857142857142857, 0.2857142857142857, 0.2857142857142857, 0.2857142857142857, 0.2857142857142857, 0.2857142857142857, 0.29120879120879123, 0.29120879120879123, 0.29120879120879123, 0.2967032967032967, 0.2967032967032967, 0.6758241758241759, 0.6868131868131868, 0.945054945054945, 0.7307692307692307, 0.6868131868131868, 0.6043956043956044, 0.2967032967032967, 0.2967032967032967, 0.2967032967032967, 0.2967032967032967, 0.2967032967032967, 0.3021978021978022, 0.3021978021978022, 0.3021978021978022, 0.3021978021978022, 0.3021978021978022, 0.3021978021978022, 0.3021978021978022, 0.3021978021978022, 0.3021978021978022, 0.3021978021978022, 0.3021978021978022, 0.3021978021978022, 0.3021978021978022, 0.3021978021978022, 0.3021978021978022, 0.3516483516483517, 0.3131868131868132, 0.3131868131868132, 0.3241758241758242, 0.3241758241758242, 0.3131868131868132, 0.3076923076923077, 0.3131868131868132, 0.34615384615384615, 0.33516483516483514, 0.3241758241758242, 0.8131868131868132, 0.8681318681318682, 0.8461538461538461, 0.7472527472527473, 0.3241758241758242, 0.35714285714285715, 0.34065934065934067, 0.6098901098901099, 0.3076923076923077, 0.3076923076923077, 0.3076923076923077, 0.3076923076923077, 0.3076923076923077, 0.3076923076923077, 0.3076923076923077, 0.3076923076923077, 0.3076923076923077, 0.3076923076923077, 0.3076923076923077, 0.3076923076923077, 0.3076923076923077, 0.3076923076923077, 0.3076923076923077, 0.3076923076923077, 0.3076923076923077, 0.3076923076923077, 0.3131868131868132, 0.3131868131868132, 0.3131868131868132, 0.3131868131868132, 0.3131868131868132, 0.3131868131868132, 0.3131868131868132, 0.3131868131868132, 0.3131868131868132, 0.3131868131868132, 0.31868131868131866, 0.8461538461538461, 0.3131868131868132, 0.3131868131868132, 0.3131868131868132, 0.3131868131868132, 0.3076923076923077, 0.3076923076923077, 0.3076923076923077, 0.3076923076923077, 0.3076923076923077, 0.3076923076923077, 0.3076923076923077, 0.3076923076923077, 0.3076923076923077, 0.3076923076923077, 0.3076923076923077, 0.3076923076923077, 0.3076923076923077, 0.3076923076923077, 0.3076923076923077, 0.3131868131868132, 0.3131868131868132, 0.3131868131868132, 0.3131868131868132, 0.3131868131868132, 0.3131868131868132, 0.3131868131868132, 0.31868131868131866, 0.31868131868131866, 0.31868131868131866, 0.31868131868131866, 0.31868131868131866, 0.34065934065934067, 0.42857142857142855, 0.46703296703296704, 0.46153846153846156, 0.4835164835164835, 0.5274725274725275, 0.5934065934065934, 0.7802197802197802, 0.7362637362637363, 0.7197802197802198, 0.7362637362637363, 0.6373626373626373, 0.8516483516483516, 0.9230769230769231, 0.945054945054945, 0.8791208791208791, 0.8131868131868132, 0.5604395604395604, 0.47802197802197804, 0.4340659340659341, 0.3956043956043956, 0.34065934065934067, 0.33516483516483514, 0.33516483516483514, 0.33516483516483514, 0.33516483516483514, 0.33516483516483514, 0.33516483516483514, 0.33516483516483514, 0.33516483516483514, 0.33516483516483514, 0.33516483516483514, 0.33516483516483514, 0.33516483516483514, 0.33516483516483514, 0.33516483516483514, 0.33516483516483514, 0.33516483516483514, 0.33516483516483514, 0.33516483516483514, 0.33516483516483514, 0.34065934065934067, 0.34065934065934067, 0.34065934065934067, 0.34065934065934067, 0.34615384615384615, 0.3516483516483517, 0.3516483516483517, 0.3516483516483517, 0.35714285714285715, 0.3626373626373626, 0.3791208791208791, 0.4010989010989011, 0.4945054945054945, 0.7582417582417582], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/SF3A2.gap.json b/pfam_gap_rates/SF3A2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..dc49e2dee9e59e9f2f6a7a1500b06746d34584eb
--- /dev/null
+++ b/pfam_gap_rates/SF3A2.gap.json
@@ -0,0 +1 @@
+{"family": "SF3A2", "n_seqs": 338, "length": 105, "gap_rates": [0.08875739644970414, 0.0650887573964497, 0.047337278106508875, 0.04142011834319527, 0.04142011834319527, 0.04142011834319527, 0.04142011834319527, 0.038461538461538464, 0.038461538461538464, 0.038461538461538464, 0.038461538461538464, 0.038461538461538464, 0.03550295857988166, 0.04437869822485207, 0.047337278106508875, 0.05029585798816568, 0.03254437869822485, 0.03254437869822485, 0.03254437869822485, 0.029585798816568046, 0.026627218934911243, 0.026627218934911243, 0.026627218934911243, 0.020710059171597635, 0.020710059171597635, 0.020710059171597635, 0.023668639053254437, 0.020710059171597635, 0.023668639053254437, 0.03550295857988166, 0.03254437869822485, 0.029585798816568046, 0.9408284023668639, 0.03550295857988166, 0.07692307692307693, 0.05325443786982249, 0.026627218934911243, 0.026627218934911243, 0.026627218934911243, 0.026627218934911243, 0.023668639053254437, 0.014792899408284023, 0.014792899408284023, 0.014792899408284023, 0.011834319526627219, 0.011834319526627219, 0.026627218934911243, 0.03254437869822485, 0.014792899408284023, 0.01775147928994083, 0.44970414201183434, 0.3757396449704142, 0.008875739644970414, 0.008875739644970414, 0.008875739644970414, 0.008875739644970414, 0.011834319526627219, 0.011834319526627219, 0.014792899408284023, 0.014792899408284023, 0.014792899408284023, 0.01775147928994083, 0.01775147928994083, 0.020710059171597635, 0.020710059171597635, 0.020710059171597635, 0.020710059171597635, 0.020710059171597635, 0.020710059171597635, 0.023668639053254437, 0.023668639053254437, 0.023668639053254437, 0.029585798816568046, 0.029585798816568046, 0.03254437869822485, 0.04142011834319527, 0.038461538461538464, 0.04142011834319527, 0.04437869822485207, 0.9497041420118343, 0.04142011834319527, 0.04142011834319527, 0.04142011834319527, 0.9437869822485208, 0.9437869822485208, 0.9437869822485208, 0.10355029585798817, 0.05917159763313609, 0.047337278106508875, 0.047337278106508875, 0.9437869822485208, 0.9467455621301775, 0.9437869822485208, 0.9378698224852071, 0.04142011834319527, 0.04437869822485207, 0.04437869822485207, 0.04437869822485207, 0.04437869822485207, 0.05029585798816568, 0.05029585798816568, 0.05917159763313609, 0.07100591715976332, 0.08875739644970414, 0.12721893491124261], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/SF3A3.gap.json b/pfam_gap_rates/SF3A3.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..bfb33260eeb98c4d4d76f9e0d765d985727767c1
--- /dev/null
+++ b/pfam_gap_rates/SF3A3.gap.json
@@ -0,0 +1 @@
+{"family": "SF3A3", "n_seqs": 321, "length": 113, "gap_rates": [0.2897196261682243, 0.037383177570093455, 0.03426791277258567, 0.03115264797507788, 0.03115264797507788, 0.028037383177570093, 0.028037383177570093, 0.024922118380062305, 0.024922118380062305, 0.021806853582554516, 0.01557632398753894, 0.01557632398753894, 0.01557632398753894, 0.01557632398753894, 0.01557632398753894, 0.01557632398753894, 0.01557632398753894, 0.01557632398753894, 0.01557632398753894, 0.01557632398753894, 0.01557632398753894, 0.01557632398753894, 0.01557632398753894, 0.01557632398753894, 0.01557632398753894, 0.04672897196261682, 0.8286604361370716, 0.9376947040498442, 0.9127725856697819, 0.14330218068535824, 0.037383177570093455, 0.021806853582554516, 0.7757009345794392, 0.8442367601246106, 0.8691588785046729, 0.8940809968847352, 0.9096573208722741, 0.9252336448598131, 0.9252336448598131, 0.9283489096573209, 0.9376947040498442, 0.9439252336448598, 0.9439252336448598, 0.9439252336448598, 0.9376947040498442, 0.9283489096573209, 0.9252336448598131, 0.9127725856697819, 0.9034267912772586, 0.881619937694704, 0.8566978193146417, 0.8068535825545171, 0.7133956386292835, 0.024922118380062305, 0.01557632398753894, 0.01557632398753894, 0.012461059190031152, 0.012461059190031152, 0.012461059190031152, 0.012461059190031152, 0.009345794392523364, 0.009345794392523364, 0.009345794392523364, 0.009345794392523364, 0.01557632398753894, 0.009345794392523364, 0.7009345794392523, 0.7320872274143302, 0.9252336448598131, 0.9158878504672897, 0.7258566978193146, 0.67601246105919, 0.04672897196261682, 0.040498442367601244, 0.03115264797507788, 0.024922118380062305, 0.9470404984423676, 0.9065420560747663, 0.01557632398753894, 0.01557632398753894, 0.18691588785046728, 0.021806853582554516, 0.028037383177570093, 0.9034267912772586, 0.06542056074766354, 0.018691588785046728, 0.018691588785046728, 0.018691588785046728, 0.021806853582554516, 0.028037383177570093, 0.028037383177570093, 0.028037383177570093, 0.028037383177570093, 0.028037383177570093, 0.028037383177570093, 0.024922118380062305, 0.024922118380062305, 0.024922118380062305, 0.024922118380062305, 0.024922118380062305, 0.024922118380062305, 0.024922118380062305, 0.024922118380062305, 0.024922118380062305, 0.024922118380062305, 0.024922118380062305, 0.024922118380062305, 0.024922118380062305, 0.03115264797507788, 0.04984423676012461, 0.08722741433021806, 0.22429906542056074, 0.5763239875389408], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/SLC12.gap.json b/pfam_gap_rates/SLC12.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..50deafa0f07d5423586db36d0987a048094a0bb8
--- /dev/null
+++ b/pfam_gap_rates/SLC12.gap.json
@@ -0,0 +1 @@
+{"family": "SLC12", "n_seqs": 1246, "length": 446, "gap_rates": [0.8290529695024077, 0.7046548956661316, 0.5818619582664526, 0.5040128410914928, 0.49357945425361155, 0.48796147672552165, 0.485553772070626, 0.485553772070626, 0.48475120385232745, 0.48475120385232745, 0.48475120385232745, 0.6139646869983949, 0.478330658105939, 0.47592295345104335, 0.4751203852327448, 0.4751203852327448, 0.4751203852327448, 0.4751203852327448, 0.4751203852327448, 0.4727126805778491, 0.47351524879614765, 0.4727126805778491, 0.47351524879614765, 0.47191011235955055, 0.471107544141252, 0.471107544141252, 0.4695024077046549, 0.4695024077046549, 0.471107544141252, 0.47030497592295345, 0.47191011235955055, 0.47191011235955055, 0.47592295345104335, 0.4967897271268058, 0.47351524879614765, 0.47191011235955055, 0.6942215088282504, 0.9085072231139647, 0.6725521669341894, 0.4678972712680578, 0.4678972712680578, 0.46709470304975925, 0.46709470304975925, 0.4654895666131621, 0.4654895666131621, 0.4654895666131621, 0.46468699839486355, 0.46468699839486355, 0.46468699839486355, 0.46308186195826645, 0.9221508828250401, 0.9221508828250401, 0.9141252006420546, 0.46147672552166935, 0.46147672552166935, 0.46147672552166935, 0.4622792937399679, 0.463884430176565, 0.463884430176565, 0.463884430176565, 0.463884430176565, 0.463884430176565, 0.4654895666131621, 0.46468699839486355, 0.463884430176565, 0.463884430176565, 0.463884430176565, 0.463884430176565, 0.463884430176565, 0.4654895666131621, 0.463884430176565, 0.4622792937399679, 0.4622792937399679, 0.46147672552166935, 0.4590690208667737, 0.45746388443017655, 0.45585874799357945, 0.456661316211878, 0.4582664526484751, 0.4582664526484751, 0.4590690208667737, 0.4606741573033708, 0.45987158908507225, 0.45987158908507225, 0.45987158908507225, 0.45987158908507225, 0.45987158908507225, 0.45987158908507225, 0.4606741573033708, 0.4606741573033708, 0.47351524879614765, 0.48635634028892455, 0.514446227929374, 0.5529695024077047, 0.5850722311396469, 0.6139646869983949, 0.608346709470305, 0.6043338683788122, 0.6324237560192616, 0.6243980738362761, 0.6195826645264848, 0.9269662921348315, 0.6187800963081862, 0.6147672552166934, 0.615569823434992, 0.6187800963081862, 0.6195826645264848, 0.6195826645264848, 0.6203852327447833, 0.6211878009630819, 0.6203852327447833, 0.6195826645264848, 0.6203852327447833, 0.6252006420545746, 0.6260032102728732, 0.630016051364366, 0.6324237560192616, 0.6332263242375602, 0.6332263242375602, 0.6332263242375602, 0.6340288924558587, 0.6356340288924559, 0.6388443017656501, 0.6492776886035313, 0.7255216693418941, 0.7351524879614767, 0.7792937399678973, 0.7865168539325843, 0.7969502407704655, 0.8065810593900482, 0.8146067415730337, 0.8226324237560193, 0.8258426966292135, 0.8322632423756019, 0.8418940609951846, 0.8434991974317817, 0.8426966292134831, 0.8426966292134831, 0.8418940609951846, 0.8418940609951846, 0.8499197431781701, 0.8531300160513644, 0.8547351524879615, 0.8563402889245586, 0.8603531300160514, 0.8747993579454254, 0.8739967897271268, 0.8739967897271268, 0.8764044943820225, 0.8764044943820225, 0.8780096308186196, 0.8812199036918138, 0.877207062600321, 0.8828250401284109, 0.8868378812199037, 0.8908507223113965, 0.898876404494382, 0.9044943820224719, 0.9165329052969502, 0.9357945425361156, 0.9325842696629213, 0.9245585874799358, 0.9261637239165329, 0.9245585874799358, 0.9020866773675762, 0.8900481540930979, 0.9125200642054575, 0.9085072231139647, 0.9052969502407705, 0.9052969502407705, 0.9012841091492777, 0.9012841091492777, 0.9036918138041734, 0.9052969502407705, 0.9012841091492777, 0.8980738362760835, 0.8964686998394864, 0.9004815409309791, 0.9004815409309791, 0.9012841091492777, 0.9036918138041734, 0.8868378812199037, 0.9141252006420546, 0.9253611556982343, 0.9165329052969502, 0.9077046548956661, 0.9036918138041734, 0.8996789727126806, 0.8908507223113965, 0.8884430176565008, 0.8868378812199037, 0.8852327447833066, 0.8852327447833066, 0.8892455858747994, 0.8876404494382022, 0.884430176565008, 0.8828250401284109, 0.884430176565008, 0.884430176565008, 0.884430176565008, 0.8884430176565008, 0.8884430176565008, 0.8908507223113965, 0.9044943820224719, 0.898876404494382, 0.8964686998394864, 0.8892455858747994, 0.8884430176565008, 0.8892455858747994, 0.8908507223113965, 0.891653290529695, 0.8892455858747994, 0.8868378812199037, 0.891653290529695, 0.8908507223113965, 0.8964686998394864, 0.8948635634028892, 0.8723916532905297, 0.9438202247191011, 0.942215088282504, 0.8595505617977528, 0.8531300160513644, 0.8443017656500803, 0.8370786516853933, 0.8282504012841091, 0.8210272873194222, 0.8146067415730337, 0.8105939004815409, 0.8073836276083467, 0.7913322632423756, 0.7817014446227929, 0.7720706260032103, 0.7391653290529695, 0.6677367576243981, 0.637239165329053, 0.6027287319422151, 0.5858747993579454, 0.5834670947030498, 0.5826645264847512, 0.5826645264847512, 0.5826645264847512, 0.5826645264847512, 0.5826645264847512, 0.5826645264847512, 0.5826645264847512, 0.5810593900481541, 0.5802568218298555, 0.5786516853932584, 0.5770465489566613, 0.5778491171749599, 0.5770465489566613, 0.5754414125200642, 0.5754414125200642, 0.5754414125200642, 0.5754414125200642, 0.5754414125200642, 0.5754414125200642, 0.5754414125200642, 0.5754414125200642, 0.5778491171749599, 0.5778491171749599, 0.5762439807383628, 0.5778491171749599, 0.5778491171749599, 0.5770465489566613, 0.5778491171749599, 0.5834670947030498, 0.5826645264847512, 0.5826645264847512, 0.5834670947030498, 0.5842696629213483, 0.5842696629213483, 0.5850722311396469, 0.5850722311396469, 0.5850722311396469, 0.5882825040128411, 0.6099518459069021, 0.586677367576244, 0.637239165329053, 0.5914927768860353, 0.586677367576244, 0.5818619582664526, 0.5802568218298555, 0.5810593900481541, 0.5802568218298555, 0.5810593900481541, 0.5810593900481541, 0.5826645264847512, 0.5826645264847512, 0.5858747993579454, 0.586677367576244, 0.586677367576244, 0.5874799357945425, 0.5874799357945425, 0.5874799357945425, 0.5882825040128411, 0.5898876404494382, 0.5922953451043339, 0.5979133226324238, 0.6829855537720706, 0.637239165329053, 0.6147672552166934, 0.6171749598715891, 0.6171749598715891, 0.6284109149277689, 0.6308186195826645, 0.9301765650080257, 0.9390048154093098, 0.9365971107544141, 0.9293739967897271, 0.6508828250401284, 0.6484751203852327, 0.6500802568218299, 0.651685393258427, 0.6524879614767255, 0.6500802568218299, 0.651685393258427, 0.6468699839486356, 0.6468699839486356, 0.6476725521669342, 0.9269662921348315, 0.9253611556982343, 0.651685393258427, 0.6532905296950241, 0.6556982343499197, 0.6565008025682183, 0.6556982343499197, 0.6524879614767255, 0.6548956661316212, 0.6548956661316212, 0.6621187800963082, 0.6605136436597111, 0.6613162118780096, 0.6629213483146067, 0.6637239165329053, 0.6637239165329053, 0.6637239165329053, 0.6629213483146067, 0.7150882825040128, 0.71669341894061, 0.7207062600321027, 0.7303370786516854, 0.7945425361155698, 0.8017656500802568, 0.8258426966292135, 0.8041733547351525, 0.7969502407704655, 0.7825040128410915, 0.7174959871589085, 0.8258426966292135, 0.8394863563402889, 0.848314606741573, 0.9109149277688604, 0.913322632423756, 0.9245585874799358, 0.934991974317817, 0.9406099518459069, 0.9462279293739968, 0.9414125200642055, 0.9382022471910112, 0.9269662921348315, 0.9197431781701445, 0.9117174959871589, 0.8996789727126806, 0.8426966292134831, 0.833868378812199, 0.8210272873194222, 0.6757624398073836, 0.6773675762439807, 0.6725521669341894, 0.6717495987158909, 0.6725521669341894, 0.6765650080256822, 0.6685393258426966, 0.6629213483146067, 0.6573033707865169, 0.651685393258427, 0.6340288924558587, 0.6243980738362761, 0.6187800963081862, 0.6131621187800963, 0.5955056179775281, 0.5963081861958266, 0.5971107544141252, 0.5963081861958266, 0.5930979133226324, 0.5955056179775281, 0.6027287319422151, 0.6027287319422151, 0.6027287319422151, 0.6027287319422151, 0.6027287319422151, 0.6027287319422151, 0.6027287319422151, 0.6035313001605136, 0.6035313001605136, 0.6035313001605136, 0.6035313001605136, 0.6043338683788122, 0.6051364365971108, 0.6051364365971108, 0.6051364365971108, 0.6099518459069021, 0.6115569823434992, 0.6123595505617978, 0.6131621187800963, 0.6123595505617978, 0.6123595505617978, 0.6131621187800963, 0.6211878009630819, 0.6926163723916533, 0.6171749598715891, 0.6179775280898876, 0.6171749598715891, 0.6163723916532905, 0.6139646869983949, 0.6139646869983949, 0.6147672552166934, 0.6147672552166934, 0.6163723916532905, 0.6147672552166934, 0.615569823434992, 0.615569823434992, 0.615569823434992, 0.615569823434992, 0.615569823434992, 0.615569823434992, 0.615569823434992, 0.615569823434992, 0.615569823434992, 0.615569823434992, 0.6163723916532905, 0.6179775280898876, 0.6187800963081862, 0.6195826645264848, 0.6203852327447833, 0.6243980738362761, 0.630016051364366, 0.6340288924558587, 0.6348314606741573, 0.6356340288924559, 0.6621187800963082, 0.6637239165329053, 0.687800963081862, 0.7030497592295345, 0.7608346709470305], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/SLD3.gap.json b/pfam_gap_rates/SLD3.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c2308ae3d605be1ad1b9ff058a16dfe349dbded1
--- /dev/null
+++ b/pfam_gap_rates/SLD3.gap.json
@@ -0,0 +1 @@
+{"family": "SLD3", "n_seqs": 121, "length": 716, "gap_rates": [0.6033057851239669, 0.45454545454545453, 0.4214876033057851, 0.4049586776859504, 0.4049586776859504, 0.39669421487603307, 0.39669421487603307, 0.3884297520661157, 0.3884297520661157, 0.3884297520661157, 0.38016528925619836, 0.371900826446281, 0.371900826446281, 0.371900826446281, 0.371900826446281, 0.371900826446281, 0.371900826446281, 0.371900826446281, 0.371900826446281, 0.371900826446281, 0.371900826446281, 0.371900826446281, 0.371900826446281, 0.371900826446281, 0.371900826446281, 0.371900826446281, 0.3884297520661157, 0.371900826446281, 0.371900826446281, 0.371900826446281, 0.36363636363636365, 0.36363636363636365, 0.36363636363636365, 0.36363636363636365, 0.35537190082644626, 0.35537190082644626, 0.34710743801652894, 0.9173553719008265, 0.5206611570247934, 0.47107438016528924, 0.4462809917355372, 0.4380165289256198, 0.4214876033057851, 0.39669421487603307, 0.34710743801652894, 0.3305785123966942, 0.3140495867768595, 0.32231404958677684, 0.32231404958677684, 0.3140495867768595, 0.2975206611570248, 0.2975206611570248, 0.2975206611570248, 0.2975206611570248, 0.2975206611570248, 0.2892561983471074, 0.2975206611570248, 0.2892561983471074, 0.2892561983471074, 0.2892561983471074, 0.2975206611570248, 0.2892561983471074, 0.2809917355371901, 0.2727272727272727, 0.2727272727272727, 0.2727272727272727, 0.2644628099173554, 0.2727272727272727, 0.9421487603305785, 0.2809917355371901, 0.2892561983471074, 0.2892561983471074, 0.2892561983471074, 0.2892561983471074, 0.2892561983471074, 0.2892561983471074, 0.2975206611570248, 0.2975206611570248, 0.2975206611570248, 0.30578512396694213, 0.36363636363636365, 0.34710743801652894, 0.33884297520661155, 0.3305785123966942, 0.32231404958677684, 0.32231404958677684, 0.39669421487603307, 0.3884297520661157, 0.36363636363636365, 0.371900826446281, 0.8264462809917356, 0.8925619834710744, 0.7272727272727273, 0.6446280991735537, 0.6115702479338843, 0.4462809917355372, 0.4297520661157025, 0.628099173553719, 0.371900826446281, 0.36363636363636365, 0.35537190082644626, 0.34710743801652894, 0.33884297520661155, 0.33884297520661155, 0.34710743801652894, 0.33884297520661155, 0.33884297520661155, 0.3140495867768595, 0.3140495867768595, 0.2975206611570248, 0.2892561983471074, 0.2892561983471074, 0.2892561983471074, 0.2892561983471074, 0.2892561983471074, 0.2809917355371901, 0.30578512396694213, 0.30578512396694213, 0.4132231404958678, 0.4049586776859504, 0.3884297520661157, 0.38016528925619836, 0.34710743801652894, 0.35537190082644626, 0.35537190082644626, 0.36363636363636365, 0.35537190082644626, 0.859504132231405, 0.8925619834710744, 0.9338842975206612, 0.9090909090909091, 0.8842975206611571, 0.7768595041322314, 0.371900826446281, 0.3884297520661157, 0.3884297520661157, 0.38016528925619836, 0.35537190082644626, 0.36363636363636365, 0.4462809917355372, 0.7355371900826446, 0.36363636363636365, 0.3140495867768595, 0.2892561983471074, 0.2644628099173554, 0.2231404958677686, 0.2066115702479339, 0.19008264462809918, 0.19008264462809918, 0.17355371900826447, 0.1652892561983471, 0.17355371900826447, 0.1487603305785124, 0.1487603305785124, 0.1487603305785124, 0.1487603305785124, 0.1487603305785124, 0.1487603305785124, 0.1487603305785124, 0.1487603305785124, 0.1487603305785124, 0.1487603305785124, 0.1487603305785124, 0.1487603305785124, 0.1487603305785124, 0.14049586776859505, 0.14049586776859505, 0.14049586776859505, 0.14049586776859505, 0.14049586776859505, 0.14049586776859505, 0.14049586776859505, 0.14049586776859505, 0.9421487603305785, 0.1487603305785124, 0.14049586776859505, 0.14049586776859505, 0.5950413223140496, 0.6859504132231405, 0.9008264462809917, 0.7520661157024794, 0.6611570247933884, 0.5867768595041323, 0.3884297520661157, 0.4049586776859504, 0.4132231404958678, 0.35537190082644626, 0.45454545454545453, 0.39669421487603307, 0.371900826446281, 0.36363636363636365, 0.3305785123966942, 0.2644628099173554, 0.2396694214876033, 0.2231404958677686, 0.2231404958677686, 0.19834710743801653, 0.17355371900826447, 0.1652892561983471, 0.18181818181818182, 0.18181818181818182, 0.18181818181818182, 0.9421487603305785, 0.2066115702479339, 0.21487603305785125, 0.2231404958677686, 0.23140495867768596, 0.24793388429752067, 0.256198347107438, 0.33884297520661155, 0.7272727272727273, 0.6942148760330579, 0.6611570247933884, 0.6033057851239669, 0.5206611570247934, 0.5041322314049587, 0.45454545454545453, 0.4380165289256198, 0.3884297520661157, 0.36363636363636365, 0.2892561983471074, 0.8677685950413223, 0.8099173553719008, 0.17355371900826447, 0.1322314049586777, 0.1487603305785124, 0.15702479338842976, 0.15702479338842976, 0.15702479338842976, 0.09917355371900827, 0.7768595041322314, 0.7768595041322314, 0.7851239669421488, 0.8099173553719008, 0.8347107438016529, 0.8512396694214877, 0.859504132231405, 0.8677685950413223, 0.8842975206611571, 0.8842975206611571, 0.8925619834710744, 0.8925619834710744, 0.8925619834710744, 0.8925619834710744, 0.9090909090909091, 0.9173553719008265, 0.9421487603305785, 0.9338842975206612, 0.9090909090909091, 0.9008264462809917, 0.8925619834710744, 0.8925619834710744, 0.8925619834710744, 0.8842975206611571, 0.8842975206611571, 0.8760330578512396, 0.859504132231405, 0.859504132231405, 0.8512396694214877, 0.8181818181818182, 0.7933884297520661, 0.7851239669421488, 0.7768595041322314, 0.7768595041322314, 0.09917355371900827, 0.09917355371900827, 0.09917355371900827, 0.09917355371900827, 0.09917355371900827, 0.09917355371900827, 0.09917355371900827, 0.09917355371900827, 0.09917355371900827, 0.09917355371900827, 0.09917355371900827, 0.09917355371900827, 0.09917355371900827, 0.09917355371900827, 0.09917355371900827, 0.09917355371900827, 0.09917355371900827, 0.09917355371900827, 0.12396694214876033, 0.1322314049586777, 0.10743801652892562, 0.10743801652892562, 0.49586776859504134, 0.371900826446281, 0.34710743801652894, 0.2727272727272727, 0.2644628099173554, 0.24793388429752067, 0.24793388429752067, 0.256198347107438, 0.2975206611570248, 0.4214876033057851, 0.39669421487603307, 0.39669421487603307, 0.371900826446281, 0.4462809917355372, 0.4628099173553719, 0.4214876033057851, 0.859504132231405, 0.9421487603305785, 0.9173553719008265, 0.8181818181818182, 0.36363636363636365, 0.2892561983471074, 0.2644628099173554, 0.19834710743801653, 0.15702479338842976, 0.1487603305785124, 0.12396694214876033, 0.10743801652892562, 0.10743801652892562, 0.10743801652892562, 0.10743801652892562, 0.10743801652892562, 0.10743801652892562, 0.10743801652892562, 0.10743801652892562, 0.10743801652892562, 0.10743801652892562, 0.10743801652892562, 0.10743801652892562, 0.11570247933884298, 0.11570247933884298, 0.11570247933884298, 0.11570247933884298, 0.11570247933884298, 0.11570247933884298, 0.12396694214876033, 0.12396694214876033, 0.12396694214876033, 0.12396694214876033, 0.12396694214876033, 0.12396694214876033, 0.12396694214876033, 0.12396694214876033, 0.12396694214876033, 0.12396694214876033, 0.12396694214876033, 0.12396694214876033, 0.12396694214876033, 0.12396694214876033, 0.1322314049586777, 0.12396694214876033, 0.2066115702479339, 0.1652892561983471, 0.17355371900826447, 0.1322314049586777, 0.17355371900826447, 0.8760330578512396, 0.1487603305785124, 0.1322314049586777, 0.1487603305785124, 0.23140495867768596, 0.21487603305785125, 0.24793388429752067, 0.256198347107438, 0.2892561983471074, 0.7024793388429752, 0.8760330578512396, 0.9090909090909091, 0.9421487603305785, 0.9256198347107438, 0.8925619834710744, 0.8181818181818182, 0.5537190082644629, 0.2892561983471074, 0.23140495867768596, 0.17355371900826447, 0.1487603305785124, 0.1487603305785124, 0.1487603305785124, 0.14049586776859505, 0.14049586776859505, 0.1322314049586777, 0.19008264462809918, 0.17355371900826447, 0.8842975206611571, 0.9173553719008265, 0.9338842975206612, 0.9421487603305785, 0.9421487603305785, 0.9421487603305785, 0.9421487603305785, 0.9338842975206612, 0.9173553719008265, 0.9008264462809917, 0.8677685950413223, 0.2231404958677686, 0.2396694214876033, 0.2231404958677686, 0.2231404958677686, 0.2396694214876033, 0.4132231404958678, 0.8016528925619835, 0.9008264462809917, 0.9173553719008265, 0.8429752066115702, 0.7520661157024794, 0.15702479338842976, 0.1487603305785124, 0.1322314049586777, 0.14049586776859505, 0.1322314049586777, 0.1322314049586777, 0.1322314049586777, 0.1322314049586777, 0.1322314049586777, 0.1322314049586777, 0.1322314049586777, 0.9090909090909091, 0.9256198347107438, 0.9256198347107438, 0.9421487603305785, 0.9421487603305785, 0.9256198347107438, 0.9173553719008265, 0.9008264462809917, 0.14049586776859505, 0.17355371900826447, 0.17355371900826447, 0.17355371900826447, 0.4049586776859504, 0.4132231404958678, 0.4049586776859504, 0.2727272727272727, 0.2644628099173554, 0.9421487603305785, 0.9338842975206612, 0.2727272727272727, 0.24793388429752067, 0.21487603305785125, 0.19008264462809918, 0.18181818181818182, 0.9173553719008265, 0.9338842975206612, 0.9421487603305785, 0.9421487603305785, 0.9421487603305785, 0.9421487603305785, 0.9338842975206612, 0.9256198347107438, 0.9173553719008265, 0.19834710743801653, 0.30578512396694213, 0.3884297520661157, 0.4049586776859504, 0.9173553719008265, 0.8925619834710744, 0.2644628099173554, 0.2231404958677686, 0.1652892561983471, 0.1652892561983471, 0.1652892561983471, 0.1652892561983471, 0.1652892561983471, 0.1652892561983471, 0.18181818181818182, 0.9008264462809917, 0.9338842975206612, 0.8677685950413223, 0.2396694214876033, 0.2396694214876033, 0.23140495867768596, 0.2231404958677686, 0.9338842975206612, 0.8099173553719008, 0.2066115702479339, 0.21487603305785125, 0.2066115702479339, 0.2066115702479339, 0.2066115702479339, 0.2231404958677686, 0.24793388429752067, 0.2644628099173554, 0.2727272727272727, 0.33884297520661155, 0.3140495867768595, 0.3305785123966942, 0.30578512396694213, 0.3140495867768595, 0.32231404958677684, 0.9338842975206612, 0.371900826446281, 0.47107438016528924, 0.47107438016528924, 0.5289256198347108, 0.5867768595041323, 0.7933884297520661, 0.8181818181818182, 0.8842975206611571, 0.9090909090909091, 0.8925619834710744, 0.8347107438016529, 0.8181818181818182, 0.7603305785123967, 0.512396694214876, 0.45454545454545453, 0.4214876033057851, 0.39669421487603307, 0.2892561983471074, 0.2892561983471074, 0.2809917355371901, 0.2727272727272727, 0.2727272727272727, 0.2727272727272727, 0.2644628099173554, 0.2809917355371901, 0.2809917355371901, 0.2892561983471074, 0.859504132231405, 0.3140495867768595, 0.2975206611570248, 0.3140495867768595, 0.32231404958677684, 0.34710743801652894, 0.32231404958677684, 0.743801652892562, 0.8842975206611571, 0.9338842975206612, 0.7768595041322314, 0.743801652892562, 0.39669421487603307, 0.38016528925619836, 0.35537190082644626, 0.35537190082644626, 0.33884297520661155, 0.33884297520661155, 0.35537190082644626, 0.34710743801652894, 0.35537190082644626, 0.34710743801652894, 0.36363636363636365, 0.371900826446281, 0.8677685950413223, 0.8677685950413223, 0.8512396694214877, 0.38016528925619836, 0.38016528925619836, 0.3884297520661157, 0.4297520661157025, 0.4132231404958678, 0.38016528925619836, 0.371900826446281, 0.38016528925619836, 0.371900826446281, 0.36363636363636365, 0.36363636363636365, 0.36363636363636365, 0.371900826446281, 0.371900826446281, 0.38016528925619836, 0.38016528925619836, 0.38016528925619836, 0.371900826446281, 0.371900826446281, 0.4462809917355372, 0.4380165289256198, 0.4380165289256198, 0.4049586776859504, 0.39669421487603307, 0.3884297520661157, 0.38016528925619836, 0.38016528925619836, 0.38016528925619836, 0.3884297520661157, 0.3884297520661157, 0.3884297520661157, 0.3884297520661157, 0.512396694214876, 0.5041322314049587, 0.6033057851239669, 0.5702479338842975, 0.5289256198347108, 0.9421487603305785, 0.4214876033057851, 0.4214876033057851, 0.4049586776859504, 0.4049586776859504, 0.4380165289256198, 0.4049586776859504, 0.4049586776859504, 0.4049586776859504, 0.4049586776859504, 0.4049586776859504, 0.4132231404958678, 0.5619834710743802, 0.9338842975206612, 0.9421487603305785, 0.9090909090909091, 0.49586776859504134, 0.45454545454545453, 0.4132231404958678, 0.9421487603305785, 0.371900826446281, 0.371900826446281, 0.371900826446281, 0.371900826446281, 0.371900826446281, 0.371900826446281, 0.371900826446281, 0.8760330578512396, 0.371900826446281, 0.38016528925619836, 0.371900826446281, 0.371900826446281, 0.45454545454545453, 0.4380165289256198, 0.4297520661157025, 0.4214876033057851, 0.4380165289256198, 0.4462809917355372, 0.7024793388429752, 0.7768595041322314, 0.8099173553719008, 0.8347107438016529, 0.8512396694214877, 0.8760330578512396, 0.9008264462809917, 0.9256198347107438, 0.9421487603305785, 0.9338842975206612, 0.9256198347107438, 0.8925619834710744, 0.8677685950413223, 0.8429752066115702, 0.8181818181818182, 0.7933884297520661, 0.7272727272727273, 0.6776859504132231, 0.47107438016528924, 0.5785123966942148, 0.5454545454545454, 0.5619834710743802, 0.5371900826446281, 0.512396694214876, 0.5454545454545454, 0.512396694214876, 0.48760330578512395, 0.47107438016528924, 0.4628099173553719, 0.4628099173553719, 0.45454545454545453, 0.4462809917355372, 0.4462809917355372, 0.4462809917355372, 0.4462809917355372, 0.4380165289256198, 0.5867768595041323, 0.6363636363636364, 0.47107438016528924, 0.4297520661157025, 0.4214876033057851, 0.4214876033057851, 0.4214876033057851, 0.4214876033057851, 0.4380165289256198, 0.4380165289256198, 0.4380165289256198, 0.4462809917355372, 0.4628099173553719, 0.4628099173553719, 0.4628099173553719, 0.5206611570247934, 0.5206611570247934, 0.5289256198347108, 0.5371900826446281, 0.5206611570247934, 0.512396694214876, 0.5206611570247934, 0.6115702479338843, 0.6198347107438017, 0.628099173553719, 0.6363636363636364, 0.6694214876033058, 0.6776859504132231, 0.6363636363636364, 0.7520661157024794, 0.768595041322314, 0.8099173553719008, 0.8429752066115702, 0.8429752066115702, 0.8429752066115702, 0.8760330578512396, 0.9008264462809917, 0.9008264462809917, 0.9173553719008265, 0.9421487603305785, 0.9421487603305785, 0.9421487603305785, 0.9256198347107438, 0.9008264462809917, 0.9008264462809917, 0.8925619834710744, 0.8512396694214877, 0.8429752066115702, 0.8429752066115702, 0.8429752066115702, 0.7851239669421488, 0.7603305785123967, 0.7520661157024794, 0.6115702479338843, 0.5785123966942148, 0.5619834710743802, 0.5289256198347108, 0.5206611570247934, 0.5289256198347108, 0.5289256198347108, 0.5289256198347108, 0.5289256198347108, 0.5289256198347108, 0.5619834710743802, 0.6115702479338843], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/SLD5_C.gap.json b/pfam_gap_rates/SLD5_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..8094c5155077274485fededd67cad44364241ee2
--- /dev/null
+++ b/pfam_gap_rates/SLD5_C.gap.json
@@ -0,0 +1 @@
+{"family": "SLD5_C", "n_seqs": 252, "length": 63, "gap_rates": [0.07936507936507936, 0.07142857142857142, 0.06746031746031746, 0.05555555555555555, 0.047619047619047616, 0.04365079365079365, 0.023809523809523808, 0.023809523809523808, 0.023809523809523808, 0.01984126984126984, 0.01984126984126984, 0.9444444444444444, 0.8650793650793651, 0.015873015873015872, 0.023809523809523808, 0.023809523809523808, 0.027777777777777776, 0.2222222222222222, 0.1626984126984127, 0.14682539682539683, 0.015873015873015872, 0.007936507936507936, 0.007936507936507936, 0.011904761904761904, 0.011904761904761904, 0.007936507936507936, 0.015873015873015872, 0.01984126984126984, 0.3968253968253968, 0.5119047619047619, 0.5833333333333334, 0.9246031746031746, 0.9484126984126984, 0.7698412698412699, 0.5476190476190477, 0.1865079365079365, 0.01984126984126984, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.003968253968253968, 0.003968253968253968, 0.003968253968253968, 0.003968253968253968, 0.003968253968253968, 0.003968253968253968, 0.003968253968253968, 0.007936507936507936, 0.007936507936507936, 0.007936507936507936, 0.007936507936507936, 0.007936507936507936, 0.007936507936507936, 0.015873015873015872, 0.01984126984126984, 0.023809523809523808, 0.03571428571428571, 0.05555555555555555, 0.1388888888888889], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/SLT_L.gap.json b/pfam_gap_rates/SLT_L.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e6e32d93ba12c9f365d7f2549b457789d191a8ad
--- /dev/null
+++ b/pfam_gap_rates/SLT_L.gap.json
@@ -0,0 +1 @@
+{"family": "SLT_L", "n_seqs": 219, "length": 67, "gap_rates": [0.6118721461187214, 0.319634703196347, 0.182648401826484, 0.0821917808219178, 0.045662100456621, 0.0319634703196347, 0.0273972602739726, 0.0273972602739726, 0.0273972602739726, 0.0273972602739726, 0.0273972602739726, 0.0273972602739726, 0.0273972602739726, 0.0273972602739726, 0.0273972602739726, 0.0182648401826484, 0.0273972602739726, 0.0182648401826484, 0.0091324200913242, 0.0045662100456621, 0.0045662100456621, 0.0045662100456621, 0.0045662100456621, 0.0045662100456621, 0.0045662100456621, 0.0045662100456621, 0.0045662100456621, 0.0045662100456621, 0.0045662100456621, 0.0045662100456621, 0.0045662100456621, 0.0045662100456621, 0.0136986301369863, 0.0091324200913242, 0.0091324200913242, 0.0091324200913242, 0.0091324200913242, 0.0091324200913242, 0.0045662100456621, 0.0045662100456621, 0.0045662100456621, 0.0045662100456621, 0.0045662100456621, 0.0045662100456621, 0.0045662100456621, 0.0045662100456621, 0.0045662100456621, 0.0045662100456621, 0.0045662100456621, 0.0045662100456621, 0.0045662100456621, 0.0045662100456621, 0.0091324200913242, 0.0091324200913242, 0.0091324200913242, 0.0091324200913242, 0.0091324200913242, 0.0593607305936073, 0.1141552511415525, 0.1506849315068493, 0.1872146118721461, 0.2420091324200913, 0.3470319634703196, 0.3607305936073059, 0.365296803652968, 0.3835616438356164, 0.4429223744292237], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/SLX9.gap.json b/pfam_gap_rates/SLX9.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..836b1ab6d9f15b943cc8f383c763a5f4e5f3de0a
--- /dev/null
+++ b/pfam_gap_rates/SLX9.gap.json
@@ -0,0 +1 @@
+{"family": "SLX9", "n_seqs": 213, "length": 208, "gap_rates": [0.9389671361502347, 0.6244131455399061, 0.4131455399061033, 0.24882629107981222, 0.20187793427230047, 0.18309859154929578, 0.1596244131455399, 0.14084507042253522, 0.92018779342723, 0.11737089201877934, 0.10328638497652583, 0.09859154929577464, 0.0892018779342723, 0.0892018779342723, 0.0892018779342723, 0.0892018779342723, 0.08450704225352113, 0.07981220657276995, 0.07981220657276995, 0.07981220657276995, 0.07981220657276995, 0.07042253521126761, 0.07042253521126761, 0.07511737089201878, 0.6103286384976526, 0.6854460093896714, 0.8591549295774648, 0.9342723004694836, 0.9483568075117371, 0.9107981220657277, 0.8075117370892019, 0.6338028169014085, 0.5915492957746479, 0.539906103286385, 0.29577464788732394, 0.2112676056338028, 0.18779342723004694, 0.06103286384976526, 0.04225352112676056, 0.046948356807511735, 0.03755868544600939, 0.03755868544600939, 0.023474178403755867, 0.028169014084507043, 0.046948356807511735, 0.39906103286384975, 0.07042253521126761, 0.24882629107981222, 0.22535211267605634, 0.19718309859154928, 0.018779342723004695, 0.023474178403755867, 0.028169014084507043, 0.028169014084507043, 0.892018779342723, 0.028169014084507043, 0.018779342723004695, 0.014084507042253521, 0.014084507042253521, 0.014084507042253521, 0.014084507042253521, 0.014084507042253521, 0.018779342723004695, 0.018779342723004695, 0.018779342723004695, 0.018779342723004695, 0.5164319248826291, 0.6244131455399061, 0.6713615023474179, 0.7511737089201878, 0.7934272300469484, 0.8075117370892019, 0.8450704225352113, 0.892018779342723, 0.9295774647887324, 0.9483568075117371, 0.9483568075117371, 0.9483568075117371, 0.9389671361502347, 0.9061032863849765, 0.8685446009389671, 0.8215962441314554, 0.7981220657276995, 0.7652582159624414, 0.7417840375586855, 0.6431924882629108, 0.5915492957746479, 0.5023474178403756, 0.25821596244131456, 0.6150234741784038, 0.4788732394366197, 0.4272300469483568, 0.36619718309859156, 0.29107981220657275, 0.24413145539906103, 0.20657276995305165, 0.14553990610328638, 0.15023474178403756, 0.12206572769953052, 0.11737089201877934, 0.107981220657277, 0.07981220657276995, 0.07981220657276995, 0.07981220657276995, 0.07511737089201878, 0.0892018779342723, 0.1267605633802817, 0.6197183098591549, 0.5868544600938967, 0.8450704225352113, 0.8779342723004695, 0.9154929577464789, 0.9389671361502347, 0.8967136150234741, 0.863849765258216, 0.8356807511737089, 0.24882629107981222, 0.8873239436619719, 0.13145539906103287, 0.12206572769953052, 0.08450704225352113, 0.06103286384976526, 0.04225352112676056, 0.04225352112676056, 0.04225352112676056, 0.028169014084507043, 0.023474178403755867, 0.018779342723004695, 0.018779342723004695, 0.023474178403755867, 0.023474178403755867, 0.03755868544600939, 0.03286384976525822, 0.3380281690140845, 0.03755868544600939, 0.03286384976525822, 0.03286384976525822, 0.03286384976525822, 0.03286384976525822, 0.03286384976525822, 0.03755868544600939, 0.03755868544600939, 0.03755868544600939, 0.03755868544600939, 0.03755868544600939, 0.03755868544600939, 0.7183098591549296, 0.7183098591549296, 0.7183098591549296, 0.7370892018779343, 0.7417840375586855, 0.7511737089201878, 0.7511737089201878, 0.7605633802816901, 0.7793427230046949, 0.7934272300469484, 0.8169014084507042, 0.8403755868544601, 0.8497652582159625, 0.8497652582159625, 0.8591549295774648, 0.8685446009389671, 0.8779342723004695, 0.9014084507042254, 0.9248826291079812, 0.9389671361502347, 0.9389671361502347, 0.9436619718309859, 0.9389671361502347, 0.9342723004694836, 0.9107981220657277, 0.9014084507042254, 0.8732394366197183, 0.863849765258216, 0.8591549295774648, 0.8497652582159625, 0.8497652582159625, 0.8262910798122066, 0.8169014084507042, 0.7887323943661971, 0.7746478873239436, 0.755868544600939, 0.7511737089201878, 0.7511737089201878, 0.7370892018779343, 0.7276995305164319, 0.7183098591549296, 0.7183098591549296, 0.7183098591549296, 0.03755868544600939, 0.03755868544600939, 0.03755868544600939, 0.03755868544600939, 0.03755868544600939, 0.03755868544600939, 0.03755868544600939, 0.03755868544600939, 0.03755868544600939, 0.03755868544600939, 0.03755868544600939, 0.03755868544600939, 0.03755868544600939, 0.03755868544600939, 0.04225352112676056, 0.046948356807511735, 0.07042253521126761, 0.09389671361502347, 0.4225352112676056], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/SMC_ScpA.gap.json b/pfam_gap_rates/SMC_ScpA.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..32aba3017ea65658e9eb5fddb51a2c5defcf3299
--- /dev/null
+++ b/pfam_gap_rates/SMC_ScpA.gap.json
@@ -0,0 +1 @@
+{"family": "SMC_ScpA", "n_seqs": 1793, "length": 255, "gap_rates": [0.14389291689905187, 0.08812046848856665, 0.0769659788064696, 0.046848856664807585, 0.04517568321249303, 0.04517568321249303, 0.044617958728388175, 0.044617958728388175, 0.044617958728388175, 0.044617958728388175, 0.044617958728388175, 0.044617958728388175, 0.044617958728388175, 0.044617958728388175, 0.044617958728388175, 0.044617958728388175, 0.044617958728388175, 0.044617958728388175, 0.044617958728388175, 0.044617958728388175, 0.044617958728388175, 0.044617958728388175, 0.044060234244283326, 0.044060234244283326, 0.044060234244283326, 0.044617958728388175, 0.044617958728388175, 0.04517568321249303, 0.8594534300055773, 0.08142777467930842, 0.06079196876742889, 0.053541550474065815, 0.046291132180702736, 0.04517568321249303, 0.042387060791968766, 0.04350250976017847, 0.042387060791968766, 0.04182933630786392, 0.04182933630786392, 0.04127161182375906, 0.04127161182375906, 0.04127161182375906, 0.04071388733965421, 0.04071388733965421, 0.04071388733965421, 0.04071388733965421, 0.04071388733965421, 0.04071388733965421, 0.04071388733965421, 0.04071388733965421, 0.04071388733965421, 0.04071388733965421, 0.04071388733965421, 0.04127161182375906, 0.04127161182375906, 0.04182933630786392, 0.04127161182375906, 0.044617958728388175, 0.05075292805354155, 0.05800334634690463, 0.05967651979921919, 0.05800334634690463, 0.06134969325153374, 0.44394868934746234, 0.3898494143892917, 0.3045175683212493, 0.3067484662576687, 0.3218070273284997, 0.6586726157278304, 0.5348577802565533, 0.271611823759063, 0.22030117122141663, 0.16397099832682654, 0.14891243725599554, 0.12994980479643056, 0.12046848856664807, 0.12214166201896264, 0.09871723368655884, 0.09983268265476855, 0.09481316229782487, 0.09313998884551032, 0.09202453987730061, 0.09481316229782487, 0.14668153931957614, 0.1399888455103179, 0.1293920803123257, 0.12437255995538204, 0.10429447852760736, 0.09871723368655884, 0.09760178471834914, 0.09815950920245399, 0.10373675404350251, 0.10708310094813163, 0.10875627440044618, 0.11098717233686559, 0.11489124372559956, 0.12325711098717233, 0.12883435582822086, 0.13664249860568878, 0.32515337423312884, 0.28165086447295035, 0.1946458449525934, 0.1762409369771333, 0.9336307863915226, 0.18237590630228667, 0.177356385945343, 0.27941996653653095, 0.21862799776910205, 0.16062465142219742, 0.15672058003346348, 0.34076965978806467, 0.2649191299498048, 0.23703290574456218, 0.21639709983268265, 0.19910764082543222, 0.19576129392080313, 0.20691578360290017, 0.20747350808700502, 0.19520356943669828, 0.19185722253206916, 0.20133853876185165, 0.19185722253206916, 0.18962632459564974, 0.939765755716676, 0.8817624093697713, 0.192414947016174, 0.1890686001115449, 0.18237590630228667, 0.18516452872281094, 0.18962632459564974, 0.17568321249302846, 0.1890686001115449, 0.9353039598438372, 0.9492470719464584, 0.8929168990518683, 0.19799219185722253, 0.42610150585610707, 0.38315672058003347, 0.22085889570552147, 0.2102621305075293, 0.17902955939765755, 0.16675962074735082, 0.1611823759063023, 0.15727830451756833, 0.15839375348577803, 0.15560513106525375, 0.1550474065811489, 0.1528165086447295, 0.14891243725599554, 0.15225878416062466, 0.1539319576129392, 0.3943112102621305, 0.2916899051868377, 0.2242052426101506, 0.19520356943669828, 0.18739542665923034, 0.16787506971556052, 0.18516452872281094, 0.3602900167317345, 0.486893474623536, 0.3725599553820413, 0.9347462353597323, 0.9447852760736196, 0.912994980479643, 0.22197434467373117, 0.2476296709425544, 0.22922476296709426, 0.27830451756832125, 0.2147239263803681, 0.1689905186837702, 0.15337423312883436, 0.15448968209704406, 0.15560513106525375, 0.15448968209704406, 0.16006692693809257, 0.1645287228109314, 0.16620189626324597, 0.16174010039040715, 0.1634132738427217, 0.3257110987172337, 0.7891801450083659, 0.7635248187395427, 0.7451199107640826, 0.6726157278304518, 0.5409927495817066, 0.5331846068042387, 0.4935861684327942, 0.47796988287785835, 0.37423312883435583, 0.40323480200780815, 0.4171779141104294, 0.8070273284997211, 0.7596207473508088, 0.7144450641383157, 0.6525376464026771, 0.5778025655326269, 0.5716675962074735, 0.947016174010039, 0.8895705521472392, 0.54712771890686, 0.35861684327941995, 0.9163413273842722, 0.2487451199107641, 0.1701059676519799, 0.14389291689905187, 0.1316229782487451, 0.13106525376464026, 0.1293920803123257, 0.12771890686001117, 0.1238148354712772, 0.12325711098717233, 0.1249302844394869, 0.8912437255995538, 0.9185722253206916, 0.9341885108756275, 0.912994980479643, 0.8594534300055773, 0.2660345789180145, 0.13218070273284996, 0.12771890686001117, 0.12102621305075292, 0.11991076408254323, 0.11879531511433351, 0.11823759063022866, 0.11823759063022866, 0.11879531511433351, 0.11879531511433351, 0.11823759063022866, 0.11823759063022866, 0.11823759063022866, 0.11879531511433351, 0.11879531511433351, 0.11879531511433351, 0.11991076408254323, 0.11991076408254323, 0.11991076408254323, 0.12548800892359174, 0.1271611823759063, 0.12827663134411602, 0.12994980479643056, 0.13273842721695484, 0.13496932515337423, 0.1483547127718907, 0.15672058003346348, 0.1634132738427217, 0.17568321249302846, 0.18460680423870607, 0.19185722253206916, 0.1996653653095371, 0.2085889570552147, 0.21416620189626326, 0.2587841606246514, 0.3100948131622978, 0.5214723926380368, 0.7718906860011154], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/SNAP-25.gap.json b/pfam_gap_rates/SNAP-25.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..4daceecdf6213957760b8a4428f30e34967b7a18
--- /dev/null
+++ b/pfam_gap_rates/SNAP-25.gap.json
@@ -0,0 +1 @@
+{"family": "SNAP-25", "n_seqs": 116, "length": 62, "gap_rates": [0.16379310344827586, 0.14655172413793102, 0.12931034482758622, 0.06896551724137931, 0.05172413793103448, 0.04310344827586207, 0.19827586206896552, 0.1724137931034483, 0.14655172413793102, 0.008620689655172414, 0.008620689655172414, 0.28448275862068967, 0.27586206896551724, 0.25862068965517243, 0.008620689655172414, 0.0, 0.0, 0.0, 0.0, 0.008620689655172414, 0.8362068965517241, 0.8620689655172413, 0.8275862068965517, 0.2672413793103448, 0.008620689655172414, 0.0, 0.0, 0.0, 0.008620689655172414, 0.008620689655172414, 0.0, 0.0, 0.0, 0.0, 0.017241379310344827, 0.017241379310344827, 0.0, 0.0, 0.008620689655172414, 0.017241379310344827, 0.14655172413793102, 0.8275862068965517, 0.9051724137931034, 0.8879310344827587, 0.8017241379310345, 0.16379310344827586, 0.017241379310344827, 0.017241379310344827, 0.017241379310344827, 0.008620689655172414, 0.008620689655172414, 0.008620689655172414, 0.008620689655172414, 0.008620689655172414, 0.008620689655172414, 0.017241379310344827, 0.017241379310344827, 0.02586206896551724, 0.02586206896551724, 0.02586206896551724, 0.02586206896551724, 0.08620689655172414], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/SNAPc_SNAP43.gap.json b/pfam_gap_rates/SNAPc_SNAP43.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..dd7600c55322fe7d44a970c77486840bc2031c2e
--- /dev/null
+++ b/pfam_gap_rates/SNAPc_SNAP43.gap.json
@@ -0,0 +1 @@
+{"family": "SNAPc_SNAP43", "n_seqs": 198, "length": 234, "gap_rates": [0.5555555555555556, 0.35353535353535354, 0.2474747474747475, 0.21212121212121213, 0.20202020202020202, 0.20202020202020202, 0.19696969696969696, 0.19696969696969696, 0.19696969696969696, 0.19696969696969696, 0.19696969696969696, 0.1919191919191919, 0.1919191919191919, 0.18686868686868688, 0.8737373737373737, 0.9040404040404041, 0.9343434343434344, 0.9141414141414141, 0.8838383838383839, 0.8636363636363636, 0.17676767676767677, 0.1717171717171717, 0.1717171717171717, 0.16666666666666666, 0.16161616161616163, 0.15656565656565657, 0.14646464646464646, 0.1414141414141414, 0.1414141414141414, 0.1414141414141414, 0.1414141414141414, 0.1414141414141414, 0.1414141414141414, 0.13636363636363635, 0.13636363636363635, 0.13636363636363635, 0.13636363636363635, 0.13636363636363635, 0.13636363636363635, 0.13131313131313133, 0.13131313131313133, 0.12626262626262627, 0.12626262626262627, 0.13131313131313133, 0.12121212121212122, 0.12121212121212122, 0.12121212121212122, 0.12121212121212122, 0.2777777777777778, 0.13131313131313133, 0.12626262626262627, 0.12121212121212122, 0.13131313131313133, 0.13131313131313133, 0.16666666666666666, 0.16161616161616163, 0.15656565656565657, 0.13131313131313133, 0.12626262626262627, 0.12626262626262627, 0.12626262626262627, 0.12626262626262627, 0.13131313131313133, 0.13636363636363635, 0.14646464646464646, 0.14646464646464646, 0.13636363636363635, 0.9191919191919192, 0.1414141414141414, 0.8131313131313131, 0.8333333333333334, 0.8383838383838383, 0.8737373737373737, 0.8787878787878788, 0.9191919191919192, 0.9292929292929293, 0.9393939393939394, 0.9393939393939394, 0.9393939393939394, 0.9393939393939394, 0.9444444444444444, 0.9494949494949495, 0.9393939393939394, 0.9393939393939394, 0.9393939393939394, 0.9393939393939394, 0.9343434343434344, 0.9242424242424242, 0.9141414141414141, 0.8787878787878788, 0.8686868686868687, 0.8333333333333334, 0.8232323232323232, 0.803030303030303, 0.16161616161616163, 0.12121212121212122, 0.9494949494949495, 0.12121212121212122, 0.09595959595959595, 0.10606060606060606, 0.09595959595959595, 0.10101010101010101, 0.09595959595959595, 0.09595959595959595, 0.10101010101010101, 0.10101010101010101, 0.10101010101010101, 0.10101010101010101, 0.10101010101010101, 0.10101010101010101, 0.10101010101010101, 0.10101010101010101, 0.10101010101010101, 0.10101010101010101, 0.09090909090909091, 0.09090909090909091, 0.09090909090909091, 0.09595959595959595, 0.10101010101010101, 0.9292929292929293, 0.8787878787878788, 0.10101010101010101, 0.08080808080808081, 0.08080808080808081, 0.08080808080808081, 0.09090909090909091, 0.09090909090909091, 0.09595959595959595, 0.10101010101010101, 0.09595959595959595, 0.09090909090909091, 0.09595959595959595, 0.09595959595959595, 0.09595959595959595, 0.09595959595959595, 0.10101010101010101, 0.10606060606060606, 0.10606060606060606, 0.1111111111111111, 0.1111111111111111, 0.11616161616161616, 0.12626262626262627, 0.12121212121212122, 0.11616161616161616, 0.11616161616161616, 0.13131313131313133, 0.1414141414141414, 0.13636363636363635, 0.1414141414141414, 0.7777777777777778, 0.15151515151515152, 0.14646464646464646, 0.15656565656565657, 0.15151515151515152, 0.15656565656565657, 0.15656565656565657, 0.15656565656565657, 0.15656565656565657, 0.15656565656565657, 0.15656565656565657, 0.16666666666666666, 0.16666666666666666, 0.1717171717171717, 0.1717171717171717, 0.17676767676767677, 0.17676767676767677, 0.18686868686868688, 0.1919191919191919, 0.2222222222222222, 0.22727272727272727, 0.5454545454545454, 0.5808080808080808, 0.5050505050505051, 0.4898989898989899, 0.51010101010101, 0.36363636363636365, 0.36363636363636365, 0.37373737373737376, 0.3686868686868687, 0.37373737373737376, 0.37373737373737376, 0.37373737373737376, 0.37373737373737376, 0.3838383838383838, 0.3888888888888889, 0.3888888888888889, 0.398989898989899, 0.5959595959595959, 0.4696969696969697, 0.43434343434343436, 0.4292929292929293, 0.4292929292929293, 0.803030303030303, 0.7474747474747475, 0.43434343434343436, 0.43434343434343436, 0.43434343434343436, 0.4292929292929293, 0.42424242424242425, 0.4292929292929293, 0.9494949494949495, 0.5, 0.4797979797979798, 0.48484848484848486, 0.4797979797979798, 0.46464646464646464, 0.8131313131313131, 0.8282828282828283, 0.7828282828282829, 0.45454545454545453, 0.47474747474747475, 0.46464646464646464, 0.46464646464646464, 0.4494949494949495, 0.46464646464646464, 0.45454545454545453, 0.4696969696969697, 0.7878787878787878, 0.4696969696969697, 0.4595959595959596, 0.4595959595959596, 0.46464646464646464, 0.4696969696969697, 0.47474747474747475, 0.4797979797979798, 0.48484848484848486, 0.48484848484848486, 0.48484848484848486, 0.5, 0.5050505050505051, 0.5252525252525253, 0.5505050505050505, 0.5606060606060606, 0.5757575757575758], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/SNO.gap.json b/pfam_gap_rates/SNO.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..7807546b20066441fda8f2da658698baedb32145
--- /dev/null
+++ b/pfam_gap_rates/SNO.gap.json
@@ -0,0 +1 @@
+{"family": "SNO", "n_seqs": 936, "length": 233, "gap_rates": [0.14102564102564102, 0.11645299145299146, 0.11217948717948718, 0.11004273504273504, 0.11004273504273504, 0.11004273504273504, 0.11004273504273504, 0.11004273504273504, 0.10576923076923077, 0.10576923076923077, 0.10576923076923077, 0.10576923076923077, 0.10576923076923077, 0.10363247863247864, 0.10363247863247864, 0.10363247863247864, 0.1014957264957265, 0.10256410256410256, 0.09935897435897435, 0.09935897435897435, 0.10042735042735043, 0.09935897435897435, 0.8002136752136753, 0.8173076923076923, 0.8450854700854701, 0.9134615384615384, 0.938034188034188, 0.9326923076923077, 0.8985042735042735, 0.8354700854700855, 0.8108974358974359, 0.7938034188034188, 0.09615384615384616, 0.09508547008547008, 0.09401709401709402, 0.09401709401709402, 0.09401709401709402, 0.09401709401709402, 0.09401709401709402, 0.09401709401709402, 0.09401709401709402, 0.09508547008547008, 0.09401709401709402, 0.9294871794871795, 0.09401709401709402, 0.09401709401709402, 0.09401709401709402, 0.09401709401709402, 0.09294871794871795, 0.09294871794871795, 0.09294871794871795, 0.09294871794871795, 0.09294871794871795, 0.09294871794871795, 0.09401709401709402, 0.09401709401709402, 0.09508547008547008, 0.09188034188034189, 0.09188034188034189, 0.09188034188034189, 0.09081196581196581, 0.08867521367521368, 0.08867521367521368, 0.08974358974358974, 0.09081196581196581, 0.08974358974358974, 0.10042735042735043, 0.09935897435897435, 0.09615384615384616, 0.09615384615384616, 0.08974358974358974, 0.09081196581196581, 0.08974358974358974, 0.08974358974358974, 0.09294871794871795, 0.09722222222222222, 0.10790598290598291, 0.1485042735042735, 0.8408119658119658, 0.11004273504273504, 0.08653846153846154, 0.08440170940170941, 0.08440170940170941, 0.08333333333333333, 0.08333333333333333, 0.08333333333333333, 0.08333333333333333, 0.08440170940170941, 0.08440170940170941, 0.08440170940170941, 0.08333333333333333, 0.08333333333333333, 0.08440170940170941, 0.08547008547008547, 0.09294871794871795, 0.09829059829059829, 0.10042735042735043, 0.10363247863247864, 0.1047008547008547, 0.5395299145299145, 0.9177350427350427, 0.9348290598290598, 0.7446581196581197, 0.5010683760683761, 0.10683760683760683, 0.1111111111111111, 0.10683760683760683, 0.14102564102564102, 0.08867521367521368, 0.09081196581196581, 0.08974358974358974, 0.08547008547008547, 0.0876068376068376, 0.08653846153846154, 0.08547008547008547, 0.08547008547008547, 0.08547008547008547, 0.08547008547008547, 0.08333333333333333, 0.08333333333333333, 0.08333333333333333, 0.08333333333333333, 0.08333333333333333, 0.08333333333333333, 0.08333333333333333, 0.08440170940170941, 0.08547008547008547, 0.08547008547008547, 0.08547008547008547, 0.08547008547008547, 0.08653846153846154, 0.08547008547008547, 0.08547008547008547, 0.08974358974358974, 0.09294871794871795, 0.09401709401709402, 0.09615384615384616, 0.09829059829059829, 0.7275641025641025, 0.8354700854700855, 0.8782051282051282, 0.9401709401709402, 0.9316239316239316, 0.8611111111111112, 0.7574786324786325, 0.48824786324786323, 0.2168803418803419, 0.09294871794871795, 0.08653846153846154, 0.08653846153846154, 0.08440170940170941, 0.0811965811965812, 0.0811965811965812, 0.08226495726495726, 0.08226495726495726, 0.0811965811965812, 0.08012820512820513, 0.0811965811965812, 0.0811965811965812, 0.08333333333333333, 0.08653846153846154, 0.08333333333333333, 0.08226495726495726, 0.6944444444444444, 0.6292735042735043, 0.14636752136752137, 0.12606837606837606, 0.09615384615384616, 0.09615384615384616, 0.09615384615384616, 0.09188034188034189, 0.08333333333333333, 0.08653846153846154, 0.08333333333333333, 0.07158119658119658, 0.7339743589743589, 0.7863247863247863, 0.8408119658119658, 0.8579059829059829, 0.8760683760683761, 0.8931623931623932, 0.9091880341880342, 0.9198717948717948, 0.9305555555555556, 0.9487179487179487, 0.9326923076923077, 0.9262820512820513, 0.9166666666666666, 0.8995726495726496, 0.8846153846153846, 0.8653846153846154, 0.8482905982905983, 0.7959401709401709, 0.7596153846153846, 0.6794871794871795, 0.09935897435897435, 0.9326923076923077, 0.875, 0.07799145299145299, 0.07371794871794872, 0.07264957264957266, 0.07905982905982906, 0.08333333333333333, 0.0876068376068376, 0.9444444444444444, 0.08867521367521368, 0.08867521367521368, 0.08974358974358974, 0.09081196581196581, 0.09081196581196581, 0.09188034188034189, 0.09188034188034189, 0.09294871794871795, 0.09294871794871795, 0.09294871794871795, 0.09294871794871795, 0.09294871794871795, 0.09401709401709402, 0.09401709401709402, 0.09508547008547008, 0.09615384615384616, 0.11217948717948718, 0.10363247863247864, 0.10363247863247864, 0.10683760683760683, 0.11324786324786325, 0.11431623931623931, 0.13141025641025642, 0.13675213675213677, 0.16987179487179488, 0.23717948717948717, 0.3504273504273504, 0.7019230769230769], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/SOG2.gap.json b/pfam_gap_rates/SOG2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d10fbfb45a68488411e950ab359cd5a000e6f253
--- /dev/null
+++ b/pfam_gap_rates/SOG2.gap.json
@@ -0,0 +1 @@
+{"family": "SOG2", "n_seqs": 197, "length": 582, "gap_rates": [0.5329949238578681, 0.5076142131979695, 0.49238578680203043, 0.49238578680203043, 0.4873096446700508, 0.4873096446700508, 0.4873096446700508, 0.4873096446700508, 0.4873096446700508, 0.4873096446700508, 0.4873096446700508, 0.5126903553299492, 0.5126903553299492, 0.47715736040609136, 0.4517766497461929, 0.4365482233502538, 0.4365482233502538, 0.43147208121827413, 0.4263959390862944, 0.43147208121827413, 0.4365482233502538, 0.4213197969543147, 0.7258883248730964, 0.7106598984771574, 0.6954314720812182, 0.4010152284263959, 0.4010152284263959, 0.4010152284263959, 0.4010152284263959, 0.4010152284263959, 0.4010152284263959, 0.4010152284263959, 0.4010152284263959, 0.4010152284263959, 0.4010152284263959, 0.4010152284263959, 0.4010152284263959, 0.4010152284263959, 0.4010152284263959, 0.4010152284263959, 0.4010152284263959, 0.4010152284263959, 0.4010152284263959, 0.4010152284263959, 0.4010152284263959, 0.4010152284263959, 0.4010152284263959, 0.4010152284263959, 0.4010152284263959, 0.40609137055837563, 0.4010152284263959, 0.4010152284263959, 0.4010152284263959, 0.4010152284263959, 0.40609137055837563, 0.7106598984771574, 0.40609137055837563, 0.40609137055837563, 0.4010152284263959, 0.4010152284263959, 0.4010152284263959, 0.4010152284263959, 0.4010152284263959, 0.4010152284263959, 0.4010152284263959, 0.4010152284263959, 0.4010152284263959, 0.4010152284263959, 0.4010152284263959, 0.4010152284263959, 0.4010152284263959, 0.4010152284263959, 0.4010152284263959, 0.4010152284263959, 0.4010152284263959, 0.4010152284263959, 0.4010152284263959, 0.4010152284263959, 0.4010152284263959, 0.4010152284263959, 0.4010152284263959, 0.4010152284263959, 0.4010152284263959, 0.7309644670050761, 0.40609137055837563, 0.5583756345177665, 0.5431472081218274, 0.5431472081218274, 0.5177664974619289, 0.49746192893401014, 0.49238578680203043, 0.47715736040609136, 0.43147208121827413, 0.40609137055837563, 0.41116751269035534, 0.41116751269035534, 0.41116751269035534, 0.41116751269035534, 0.41116751269035534, 0.41116751269035534, 0.41624365482233505, 0.41116751269035534, 0.41116751269035534, 0.40609137055837563, 0.40609137055837563, 0.40609137055837563, 0.40609137055837563, 0.40609137055837563, 0.40609137055837563, 0.40609137055837563, 0.40609137055837563, 0.40609137055837563, 0.40609137055837563, 0.40609137055837563, 0.40609137055837563, 0.40609137055837563, 0.40609137055837563, 0.40609137055837563, 0.40609137055837563, 0.40609137055837563, 0.40609137055837563, 0.40609137055837563, 0.40609137055837563, 0.40609137055837563, 0.40609137055837563, 0.41116751269035534, 0.4517766497461929, 0.40609137055837563, 0.40609137055837563, 0.40609137055837563, 0.40609137055837563, 0.40609137055837563, 0.40609137055837563, 0.40609137055837563, 0.40609137055837563, 0.40609137055837563, 0.40609137055837563, 0.40609137055837563, 0.40609137055837563, 0.41116751269035534, 0.41116751269035534, 0.41116751269035534, 0.41116751269035534, 0.41116751269035534, 0.41116751269035534, 0.41116751269035534, 0.41116751269035534, 0.41116751269035534, 0.41116751269035534, 0.41116751269035534, 0.41624365482233505, 0.4213197969543147, 0.4365482233502538, 0.43147208121827413, 0.4213197969543147, 0.4263959390862944, 0.4263959390862944, 0.5126903553299492, 0.5177664974619289, 0.5177664974619289, 0.5431472081218274, 0.5482233502538071, 0.7563451776649747, 0.7715736040609137, 0.8071065989847716, 0.8629441624365483, 0.9086294416243654, 0.9289340101522843, 0.934010152284264, 0.9238578680203046, 0.8883248730964467, 0.8324873096446701, 0.7918781725888325, 0.7715736040609137, 0.7157360406091371, 0.6598984771573604, 0.7461928934010152, 0.7208121827411168, 0.6802030456852792, 0.6446700507614214, 0.6345177664974619, 0.6192893401015228, 0.5685279187817259, 0.5380710659898477, 0.5279187817258884, 0.5279187817258884, 0.5431472081218274, 0.5532994923857868, 0.5685279187817259, 0.5736040609137056, 0.5786802030456852, 0.583756345177665, 0.5888324873096447, 0.5888324873096447, 0.6040609137055838, 0.6192893401015228, 0.6446700507614214, 0.6395939086294417, 0.6294416243654822, 0.6548223350253807, 0.6802030456852792, 0.8020304568527918, 0.7918781725888325, 0.766497461928934, 0.7461928934010152, 0.7360406091370558, 0.7360406091370558, 0.7258883248730964, 0.7106598984771574, 0.6954314720812182, 0.6802030456852792, 0.6954314720812182, 0.7055837563451777, 0.700507614213198, 0.6954314720812182, 0.700507614213198, 0.6954314720812182, 0.700507614213198, 0.7106598984771574, 0.7258883248730964, 0.7157360406091371, 0.700507614213198, 0.9390862944162437, 0.9390862944162437, 0.9441624365482234, 0.949238578680203, 0.949238578680203, 0.949238578680203, 0.9441624365482234, 0.9390862944162437, 0.9390862944162437, 0.9390862944162437, 0.7157360406091371, 0.8578680203045685, 0.6954314720812182, 0.7258883248730964, 0.6954314720812182, 0.700507614213198, 0.700507614213198, 0.700507614213198, 0.7055837563451777, 0.7969543147208121, 0.8121827411167513, 0.8071065989847716, 0.8020304568527918, 0.7969543147208121, 0.7918781725888325, 0.7868020304568528, 0.7868020304568528, 0.7868020304568528, 0.766497461928934, 0.7563451776649747, 0.9137055837563451, 0.9390862944162437, 0.9289340101522843, 0.8730964467005076, 0.8071065989847716, 0.8223350253807107, 0.8121827411167513, 0.8121827411167513, 0.8121827411167513, 0.7969543147208121, 0.7868020304568528, 0.8020304568527918, 0.7918781725888325, 0.883248730964467, 0.8781725888324873, 0.8730964467005076, 0.8730964467005076, 0.8375634517766497, 0.8223350253807107, 0.8223350253807107, 0.7969543147208121, 0.8020304568527918, 0.7817258883248731, 0.7715736040609137, 0.7715736040609137, 0.7715736040609137, 0.751269035532995, 0.751269035532995, 0.751269035532995, 0.7461928934010152, 0.7461928934010152, 0.7563451776649747, 0.7461928934010152, 0.7868020304568528, 0.766497461928934, 0.7715736040609137, 0.766497461928934, 0.7614213197969543, 0.7614213197969543, 0.7969543147208121, 0.8121827411167513, 0.817258883248731, 0.8121827411167513, 0.8121827411167513, 0.8324873096446701, 0.8324873096446701, 0.8426395939086294, 0.8223350253807107, 0.8071065989847716, 0.7766497461928934, 0.766497461928934, 0.766497461928934, 0.7614213197969543, 0.7563451776649747, 0.7766497461928934, 0.7360406091370558, 0.7309644670050761, 0.7309644670050761, 0.7360406091370558, 0.7258883248730964, 0.7055837563451777, 0.700507614213198, 0.700507614213198, 0.700507614213198, 0.883248730964467, 0.9187817258883249, 0.7868020304568528, 0.7309644670050761, 0.7055837563451777, 0.6903553299492385, 0.6802030456852792, 0.6852791878172588, 0.6954314720812182, 0.7106598984771574, 0.7106598984771574, 0.6852791878172588, 0.6700507614213198, 0.6751269035532995, 0.6649746192893401, 0.6345177664974619, 0.649746192893401, 0.6192893401015228, 0.6142131979695431, 0.6040609137055838, 0.6040609137055838, 0.6040609137055838, 0.5989847715736041, 0.5939086294416244, 0.5989847715736041, 0.5989847715736041, 0.583756345177665, 0.8527918781725888, 0.868020304568528, 0.8984771573604061, 0.9137055837563451, 0.934010152284264, 0.9441624365482234, 0.9390862944162437, 0.9238578680203046, 0.9035532994923858, 0.8781725888324873, 0.8629441624365483, 0.8527918781725888, 0.8223350253807107, 0.8375634517766497, 0.6751269035532995, 0.6751269035532995, 0.6649746192893401, 0.6649746192893401, 0.7208121827411168, 0.7461928934010152, 0.9086294416243654, 0.9238578680203046, 0.8730964467005076, 0.6548223350253807, 0.6395939086294417, 0.6649746192893401, 0.5888324873096447, 0.583756345177665, 0.5685279187817259, 0.5583756345177665, 0.5279187817258884, 0.5126903553299492, 0.49238578680203043, 0.4873096446700508, 0.5279187817258884, 0.48223350253807107, 0.49746192893401014, 0.4873096446700508, 0.934010152284264, 0.9390862944162437, 0.9086294416243654, 0.6649746192893401, 0.6395939086294417, 0.6040609137055838, 0.48223350253807107, 0.48223350253807107, 0.48223350253807107, 0.49746192893401014, 0.5634517766497462, 0.8578680203045685, 0.9390862944162437, 0.7868020304568528, 0.6192893401015228, 0.5532994923857868, 0.5431472081218274, 0.5329949238578681, 0.5279187817258884, 0.6345177664974619, 0.5380710659898477, 0.5076142131979695, 0.48223350253807107, 0.48223350253807107, 0.4720812182741117, 0.4720812182741117, 0.467005076142132, 0.4517766497461929, 0.4213197969543147, 0.8274111675126904, 0.883248730964467, 0.9390862944162437, 0.949238578680203, 0.9238578680203046, 0.8426395939086294, 0.8121827411167513, 0.40609137055837563, 0.41116751269035534, 0.4213197969543147, 0.37055837563451777, 0.7360406091370558, 0.8375634517766497, 0.8984771573604061, 0.934010152284264, 0.9187817258883249, 0.8527918781725888, 0.7461928934010152, 0.7258883248730964, 0.37055837563451777, 0.36548223350253806, 0.36548223350253806, 0.36548223350253806, 0.36548223350253806, 0.36548223350253806, 0.36548223350253806, 0.36548223350253806, 0.36548223350253806, 0.36548223350253806, 0.36548223350253806, 0.36548223350253806, 0.36548223350253806, 0.36548223350253806, 0.36548223350253806, 0.36548223350253806, 0.36548223350253806, 0.36548223350253806, 0.36548223350253806, 0.36548223350253806, 0.37055837563451777, 0.37055837563451777, 0.37055837563451777, 0.38071065989847713, 0.38071065989847713, 0.38071065989847713, 0.38071065989847713, 0.39593908629441626, 0.7106598984771574, 0.7208121827411168, 0.9238578680203046, 0.934010152284264, 0.9441624365482234, 0.9441624365482234, 0.9390862944162437, 0.934010152284264, 0.9086294416243654, 0.5076142131979695, 0.583756345177665, 0.5380710659898477, 0.5228426395939086, 0.49746192893401014, 0.4873096446700508, 0.45685279187817257, 0.4619289340101523, 0.467005076142132, 0.45685279187817257, 0.45685279187817257, 0.4517766497461929, 0.4517766497461929, 0.4517766497461929, 0.4467005076142132, 0.4263959390862944, 0.38071065989847713, 0.38071065989847713, 0.3756345177664975, 0.3756345177664975, 0.3756345177664975, 0.3756345177664975, 0.3756345177664975, 0.3756345177664975, 0.3756345177664975, 0.3756345177664975, 0.3756345177664975, 0.3756345177664975, 0.3756345177664975, 0.3756345177664975, 0.3756345177664975, 0.38071065989847713, 0.38071065989847713, 0.38071065989847713, 0.3756345177664975, 0.3756345177664975, 0.3756345177664975, 0.3756345177664975, 0.3756345177664975, 0.5888324873096447, 0.6294416243654822, 0.6091370558375635, 0.6192893401015228, 0.8984771573604061, 0.9187817258883249, 0.9137055837563451, 0.8934010152284264, 0.6954314720812182, 0.5939086294416244, 0.583756345177665, 0.39086294416243655, 0.3756345177664975, 0.3756345177664975, 0.3756345177664975, 0.38071065989847713, 0.38071065989847713, 0.3756345177664975, 0.3756345177664975, 0.3756345177664975, 0.3756345177664975, 0.3756345177664975, 0.3756345177664975, 0.3756345177664975, 0.3756345177664975, 0.3756345177664975, 0.3756345177664975, 0.3756345177664975, 0.3756345177664975, 0.39086294416243655, 0.39593908629441626, 0.39593908629441626, 0.39593908629441626, 0.39593908629441626, 0.39593908629441626, 0.39086294416243655, 0.39086294416243655, 0.39086294416243655, 0.39086294416243655, 0.5076142131979695, 0.49746192893401014, 0.39593908629441626, 0.39593908629441626, 0.39593908629441626, 0.39593908629441626, 0.4010152284263959, 0.39593908629441626, 0.39593908629441626, 0.8629441624365483, 0.8477157360406091, 0.39593908629441626, 0.39593908629441626, 0.39593908629441626, 0.39593908629441626, 0.39593908629441626, 0.39593908629441626, 0.39593908629441626, 0.39593908629441626, 0.39593908629441626, 0.39593908629441626, 0.39593908629441626, 0.39593908629441626, 0.39593908629441626, 0.39593908629441626, 0.39593908629441626, 0.39593908629441626, 0.39593908629441626, 0.39593908629441626, 0.39593908629441626, 0.4010152284263959, 0.4213197969543147, 0.4263959390862944, 0.4365482233502538, 0.4517766497461929, 0.467005076142132, 0.49746192893401014, 0.7208121827411168], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/SOUL.gap.json b/pfam_gap_rates/SOUL.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..1cbe70aef7ff4d998b6e1046d5b3743dd175d2e2
--- /dev/null
+++ b/pfam_gap_rates/SOUL.gap.json
@@ -0,0 +1 @@
+{"family": "SOUL", "n_seqs": 674, "length": 224, "gap_rates": [0.6350148367952523, 0.37091988130563797, 0.31305637982195844, 0.2789317507418398, 0.2685459940652819, 0.2655786350148368, 0.2596439169139466, 0.2522255192878338, 0.24777448071216618, 0.26112759643916916, 0.2522255192878338, 0.9362017804154302, 0.7166172106824926, 0.24777448071216618, 0.2922848664688427, 0.3323442136498516, 0.9272997032640949, 0.9332344213649851, 0.9065281899109793, 0.1884272997032641, 0.18694362017804153, 0.18545994065281898, 0.18545994065281898, 0.1884272997032641, 0.18397626112759644, 0.17804154302670624, 0.1795252225519288, 0.17655786350148367, 0.1661721068249258, 0.16468842729970326, 0.1632047477744807, 0.16172106824925817, 0.16172106824925817, 0.16023738872403562, 0.9332344213649851, 0.16913946587537093, 0.93026706231454, 0.1943620178041543, 0.3397626112759644, 0.2774480712166172, 0.2522255192878338, 0.26409495548961426, 0.20178041543026706, 0.2062314540059347, 0.17507418397626112, 0.15875370919881307, 0.2551928783382789, 0.16172106824925817, 0.14094955489614244, 0.9065281899109793, 0.13649851632047477, 0.13501483679525222, 0.13649851632047477, 0.13649851632047477, 0.13649851632047477, 0.13204747774480713, 0.129080118694362, 0.129080118694362, 0.12759643916913946, 0.12314540059347182, 0.9287833827893175, 0.93026706231454, 0.9287833827893175, 0.9287833827893175, 0.14836795252225518, 0.11572700296735905, 0.142433234421365, 0.9495548961424333, 0.129080118694362, 0.12314540059347182, 0.13056379821958458, 0.09940652818991098, 0.08160237388724036, 0.07863501483679525, 0.06528189910979229, 0.06973293768545995, 0.06528189910979229, 0.06676557863501484, 0.06676557863501484, 0.5385756676557863, 0.755192878338279, 0.7893175074183977, 0.8249258160237388, 0.8545994065281899, 0.8857566765578635, 0.9183976261127597, 0.9406528189910979, 0.9272997032640949, 0.9020771513353115, 0.8724035608308606, 0.8427299703264095, 0.8071216617210683, 0.7700296735905044, 0.7537091988130564, 0.6409495548961425, 0.8397626112759644, 0.4599406528189911, 0.37388724035608306, 0.4658753709198813, 0.43471810089020774, 0.4287833827893175, 0.14540059347181009, 0.2818991097922849, 0.37537091988130566, 0.4599406528189911, 0.7270029673590505, 0.8353115727002968, 0.8991097922848664, 0.9465875370919882, 0.9213649851632048, 0.8798219584569733, 0.7774480712166172, 0.516320474777448, 0.41097922848664686, 0.3367952522255193, 0.24183976261127596, 0.129080118694362, 0.12759643916913946, 0.12462908011869436, 0.12462908011869436, 0.11572700296735905, 0.1172106824925816, 0.1172106824925816, 0.11869436201780416, 0.11869436201780416, 0.11869436201780416, 0.11869436201780416, 0.12166172106824925, 0.16765578635014836, 0.2789317507418398, 0.8768545994065282, 0.3086053412462908, 0.142433234421365, 0.22997032640949555, 0.13501483679525222, 0.12462908011869436, 0.1572700296735905, 0.12759643916913946, 0.6958456973293768, 0.1394658753709199, 0.1513353115727003, 0.3293768545994065, 0.11869436201780416, 0.11869436201780416, 0.1201780415430267, 0.11869436201780416, 0.1172106824925816, 0.1172106824925816, 0.11572700296735905, 0.11275964391691394, 0.11275964391691394, 0.11275964391691394, 0.11275964391691394, 0.1142433234421365, 0.11275964391691394, 0.11275964391691394, 0.1142433234421365, 0.1172106824925816, 0.1172106824925816, 0.11869436201780416, 0.11869436201780416, 0.8649851632047477, 0.12314540059347182, 0.2195845697329377, 0.142433234421365, 0.13204747774480713, 0.13204747774480713, 0.13056379821958458, 0.129080118694362, 0.13056379821958458, 0.13204747774480713, 0.129080118694362, 0.129080118694362, 0.129080118694362, 0.129080118694362, 0.129080118694362, 0.129080118694362, 0.129080118694362, 0.129080118694362, 0.129080118694362, 0.14094955489614244, 0.1513353115727003, 0.9495548961424333, 0.9495548961424333, 0.16023738872403562, 0.16468842729970326, 0.658753709198813, 0.7893175074183977, 0.9495548961424333, 0.9154302670623146, 0.7418397626112759, 0.44807121661721067, 0.19881305637982197, 0.4495548961424332, 0.4910979228486647, 0.900593471810089, 0.8501483679525222, 0.3367952522255193, 0.16913946587537093, 0.25667655786350146, 0.24777448071216618, 0.24777448071216618, 0.15281899109792285, 0.1543026706231454, 0.1572700296735905, 0.15578635014836795, 0.1572700296735905, 0.1632047477744807, 0.16468842729970326, 0.16913946587537093, 0.21364985163204747, 0.5563798219584569, 0.20474777448071216, 0.19287833827893175, 0.19732937685459942, 0.19732937685459942, 0.19881305637982197, 0.20474777448071216, 0.20474777448071216, 0.2062314540059347, 0.20919881305637983, 0.2166172106824926, 0.24925816023738873, 0.8456973293768546], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/SPC25.gap.json b/pfam_gap_rates/SPC25.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..af276ed0efd7ea5ab732011d610e23a96a3f692a
--- /dev/null
+++ b/pfam_gap_rates/SPC25.gap.json
@@ -0,0 +1 @@
+{"family": "SPC25", "n_seqs": 332, "length": 180, "gap_rates": [0.4879518072289157, 0.16566265060240964, 0.1536144578313253, 0.13855421686746988, 0.13855421686746988, 0.13253012048192772, 0.12951807228915663, 0.12349397590361445, 0.11746987951807229, 0.10843373493975904, 0.10843373493975904, 0.10240963855421686, 0.09939759036144578, 0.08433734939759036, 0.08132530120481928, 0.08734939759036145, 0.07530120481927711, 0.8945783132530121, 0.9367469879518072, 0.5240963855421686, 0.06927710843373494, 0.06325301204819277, 0.060240963855421686, 0.060240963855421686, 0.060240963855421686, 0.060240963855421686, 0.06325301204819277, 0.06626506024096386, 0.06325301204819277, 0.06325301204819277, 0.05421686746987952, 0.05421686746987952, 0.05421686746987952, 0.05421686746987952, 0.060240963855421686, 0.060240963855421686, 0.0572289156626506, 0.05421686746987952, 0.05421686746987952, 0.05120481927710843, 0.05120481927710843, 0.05120481927710843, 0.05120481927710843, 0.05120481927710843, 0.04819277108433735, 0.04819277108433735, 0.05120481927710843, 0.05120481927710843, 0.0572289156626506, 0.05421686746987952, 0.07530120481927711, 0.2560240963855422, 0.25903614457831325, 0.08734939759036145, 0.08433734939759036, 0.06325301204819277, 0.060240963855421686, 0.060240963855421686, 0.06325301204819277, 0.06325301204819277, 0.06325301204819277, 0.06927710843373494, 0.06927710843373494, 0.0783132530120482, 0.07530120481927711, 0.08433734939759036, 0.09337349397590361, 0.09337349397590361, 0.09036144578313253, 0.09036144578313253, 0.08734939759036145, 0.08734939759036145, 0.08132530120481928, 0.08132530120481928, 0.0783132530120482, 0.0783132530120482, 0.07530120481927711, 0.07228915662650602, 0.07228915662650602, 0.06927710843373494, 0.08734939759036145, 0.07228915662650602, 0.06626506024096386, 0.06325301204819277, 0.06325301204819277, 0.060240963855421686, 0.060240963855421686, 0.060240963855421686, 0.0572289156626506, 0.0572289156626506, 0.0572289156626506, 0.06927710843373494, 0.08433734939759036, 0.08433734939759036, 0.0963855421686747, 0.0963855421686747, 0.1927710843373494, 0.33433734939759036, 0.48493975903614456, 0.4397590361445783, 0.41566265060240964, 0.6204819277108434, 0.9307228915662651, 0.9487951807228916, 0.9397590361445783, 0.9246987951807228, 0.6114457831325302, 0.08433734939759036, 0.08132530120481928, 0.0783132530120482, 0.06626506024096386, 0.06927710843373494, 0.06927710843373494, 0.08734939759036145, 0.08132530120481928, 0.07530120481927711, 0.06927710843373494, 0.07530120481927711, 0.06626506024096386, 0.8945783132530121, 0.9036144578313253, 0.9457831325301205, 0.9397590361445783, 0.8945783132530121, 0.8825301204819277, 0.06626506024096386, 0.06325301204819277, 0.06325301204819277, 0.06325301204819277, 0.06325301204819277, 0.06325301204819277, 0.06325301204819277, 0.06325301204819277, 0.06325301204819277, 0.18072289156626506, 0.1746987951807229, 0.13253012048192772, 0.12349397590361445, 0.1716867469879518, 0.20783132530120482, 0.39759036144578314, 0.24096385542168675, 0.1897590361445783, 0.1716867469879518, 0.1927710843373494, 0.21084337349397592, 0.2620481927710843, 0.8463855421686747, 0.9487951807228916, 0.858433734939759, 0.8132530120481928, 0.5271084337349398, 0.14457831325301204, 0.1144578313253012, 0.08734939759036145, 0.08132530120481928, 0.08132530120481928, 0.08132530120481928, 0.08132530120481928, 0.08132530120481928, 0.08132530120481928, 0.08132530120481928, 0.08433734939759036, 0.08433734939759036, 0.08734939759036145, 0.08734939759036145, 0.08734939759036145, 0.08734939759036145, 0.08734939759036145, 0.09036144578313253, 0.09036144578313253, 0.09036144578313253, 0.09036144578313253, 0.09337349397590361, 0.10240963855421686, 0.10240963855421686, 0.1144578313253012, 0.13253012048192772, 0.1897590361445783, 0.33433734939759036], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/SPO22.gap.json b/pfam_gap_rates/SPO22.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..20a844eb52079623d89acdd2e0534c4f8daa4846
--- /dev/null
+++ b/pfam_gap_rates/SPO22.gap.json
@@ -0,0 +1 @@
+{"family": "SPO22", "n_seqs": 167, "length": 339, "gap_rates": [0.5209580838323353, 0.3413173652694611, 0.31137724550898205, 0.30538922155688625, 0.2934131736526946, 0.281437125748503, 0.2754491017964072, 0.2634730538922156, 0.2634730538922156, 0.25149700598802394, 0.25748502994011974, 0.25748502994011974, 0.25748502994011974, 0.25149700598802394, 0.24550898203592814, 0.24550898203592814, 0.24550898203592814, 0.6287425149700598, 0.6467065868263473, 0.4311377245508982, 0.41916167664670656, 0.41916167664670656, 0.23353293413173654, 0.2215568862275449, 0.20958083832335328, 0.20958083832335328, 0.2155688622754491, 0.3652694610778443, 0.2155688622754491, 0.19760479041916168, 0.18562874251497005, 0.18562874251497005, 0.18562874251497005, 0.17964071856287425, 0.17964071856287425, 0.17365269461077845, 0.17365269461077845, 0.17365269461077845, 0.17365269461077845, 0.17365269461077845, 0.17365269461077845, 0.17365269461077845, 0.17365269461077845, 0.17365269461077845, 0.17365269461077845, 0.17365269461077845, 0.17365269461077845, 0.7664670658682635, 0.844311377245509, 0.8922155688622755, 0.9401197604790419, 0.9461077844311377, 0.9281437125748503, 0.8862275449101796, 0.7724550898203593, 0.7305389221556886, 0.19161676646706588, 0.17964071856287425, 0.17964071856287425, 0.17964071856287425, 0.17964071856287425, 0.17964071856287425, 0.17365269461077845, 0.17365269461077845, 0.19161676646706588, 0.9101796407185628, 0.9101796407185628, 0.9101796407185628, 0.17365269461077845, 0.17365269461077845, 0.16766467065868262, 0.16766467065868262, 0.16766467065868262, 0.17365269461077845, 0.17365269461077845, 0.17365269461077845, 0.17365269461077845, 0.17365269461077845, 0.17365269461077845, 0.30538922155688625, 0.2934131736526946, 0.281437125748503, 0.281437125748503, 0.17964071856287425, 0.19161676646706588, 0.18562874251497005, 0.18562874251497005, 0.2215568862275449, 0.7904191616766467, 0.8862275449101796, 0.9221556886227545, 0.9461077844311377, 0.9461077844311377, 0.9461077844311377, 0.9281437125748503, 0.8982035928143712, 0.7964071856287425, 0.7724550898203593, 0.6646706586826348, 0.32934131736526945, 0.19161676646706588, 0.16167664670658682, 0.15568862275449102, 0.1377245508982036, 0.11377245508982035, 0.11377245508982035, 0.11377245508982035, 0.11377245508982035, 0.10778443113772455, 0.10778443113772455, 0.10778443113772455, 0.10778443113772455, 0.10778443113772455, 0.11976047904191617, 0.11976047904191617, 0.11976047904191617, 0.1317365269461078, 0.33532934131736525, 0.9041916167664671, 0.8922155688622755, 0.4491017964071856, 0.4491017964071856, 0.23952095808383234, 0.1317365269461078, 0.1317365269461078, 0.1317365269461078, 0.1317365269461078, 0.1317365269461078, 0.1317365269461078, 0.1317365269461078, 0.1317365269461078, 0.1317365269461078, 0.1317365269461078, 0.1317365269461078, 0.1317365269461078, 0.11976047904191617, 0.12574850299401197, 0.8083832335329342, 0.8622754491017964, 0.9041916167664671, 0.874251497005988, 0.8263473053892215, 0.7485029940119761, 0.12574850299401197, 0.19760479041916168, 0.17964071856287425, 0.18562874251497005, 0.2155688622754491, 0.6646706586826348, 0.6047904191616766, 0.2874251497005988, 0.1437125748502994, 0.1437125748502994, 0.1437125748502994, 0.1437125748502994, 0.1437125748502994, 0.1377245508982036, 0.1377245508982036, 0.1377245508982036, 0.1377245508982036, 0.1377245508982036, 0.1437125748502994, 0.1497005988023952, 0.19161676646706588, 0.6047904191616766, 0.7964071856287425, 0.8023952095808383, 0.8083832335329342, 0.8143712574850299, 0.8143712574850299, 0.8143712574850299, 0.8143712574850299, 0.8143712574850299, 0.8143712574850299, 0.8143712574850299, 0.8143712574850299, 0.8083832335329342, 0.8083832335329342, 0.8023952095808383, 0.6167664670658682, 0.5089820359281437, 0.17964071856287425, 0.1437125748502994, 0.1497005988023952, 0.1437125748502994, 0.1377245508982036, 0.1377245508982036, 0.1377245508982036, 0.1377245508982036, 0.1377245508982036, 0.1317365269461078, 0.1317365269461078, 0.1377245508982036, 0.16766467065868262, 0.1317365269461078, 0.1317365269461078, 0.1317365269461078, 0.1317365269461078, 0.23353293413173654, 0.2634730538922156, 0.25748502994011974, 0.2934131736526946, 0.9041916167664671, 0.8862275449101796, 0.2275449101796407, 0.1437125748502994, 0.1377245508982036, 0.1377245508982036, 0.1377245508982036, 0.1377245508982036, 0.1377245508982036, 0.1377245508982036, 0.1497005988023952, 0.1497005988023952, 0.1437125748502994, 0.1497005988023952, 0.1497005988023952, 0.1497005988023952, 0.1497005988023952, 0.15568862275449102, 0.25748502994011974, 0.8023952095808383, 0.2155688622754491, 0.2934131736526946, 0.1497005988023952, 0.1317365269461078, 0.1317365269461078, 0.12574850299401197, 0.12574850299401197, 0.12574850299401197, 0.11976047904191617, 0.11976047904191617, 0.11976047904191617, 0.11976047904191617, 0.11976047904191617, 0.11976047904191617, 0.11976047904191617, 0.12574850299401197, 0.8203592814371258, 0.8682634730538922, 0.8982035928143712, 0.8682634730538922, 0.6467065868263473, 0.33532934131736525, 0.3772455089820359, 0.3532934131736527, 0.18562874251497005, 0.3473053892215569, 0.16766467065868262, 0.17365269461077845, 0.17964071856287425, 0.19161676646706588, 0.16167664670658682, 0.7005988023952096, 0.7904191616766467, 0.7784431137724551, 0.6826347305389222, 0.31137724550898205, 0.17365269461077845, 0.15568862275449102, 0.1377245508982036, 0.1377245508982036, 0.1377245508982036, 0.1377245508982036, 0.1377245508982036, 0.1377245508982036, 0.1377245508982036, 0.1377245508982036, 0.1377245508982036, 0.1377245508982036, 0.1377245508982036, 0.1437125748502994, 0.4311377245508982, 0.40119760479041916, 0.39520958083832336, 0.3473053892215569, 0.3413173652694611, 0.31736526946107785, 0.874251497005988, 0.8143712574850299, 0.32934131736526945, 0.32934131736526945, 0.32934131736526945, 0.32934131736526945, 0.31736526946107785, 0.31736526946107785, 0.32335329341317365, 0.32335329341317365, 0.32335329341317365, 0.32934131736526945, 0.3532934131736527, 0.5029940119760479, 0.5269461077844312, 0.38323353293413176, 0.38323353293413176, 0.33532934131736525, 0.32934131736526945, 0.32934131736526945, 0.32335329341317365, 0.32335329341317365, 0.30538922155688625, 0.9161676646706587, 0.8922155688622755, 0.16167664670658682, 0.15568862275449102, 0.15568862275449102, 0.15568862275449102, 0.16167664670658682, 0.16167664670658682, 0.15568862275449102, 0.15568862275449102, 0.1377245508982036, 0.1377245508982036, 0.15568862275449102, 0.15568862275449102, 0.1497005988023952, 0.16167664670658682, 0.16766467065868262, 0.17365269461077845, 0.17964071856287425, 0.17365269461077845, 0.17365269461077845, 0.17365269461077845, 0.18562874251497005, 0.19161676646706588, 0.19161676646706588, 0.20359281437125748, 0.20359281437125748, 0.20359281437125748, 0.20359281437125748, 0.20359281437125748, 0.20359281437125748, 0.20359281437125748, 0.20359281437125748, 0.20359281437125748, 0.20958083832335328, 0.2155688622754491, 0.2994011976047904, 0.6287425149700598], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/SRCR.gap.json b/pfam_gap_rates/SRCR.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..cb6f7da758ec317749c241f45184cc1b70a4bf92
--- /dev/null
+++ b/pfam_gap_rates/SRCR.gap.json
@@ -0,0 +1 @@
+{"family": "SRCR", "n_seqs": 5000, "length": 108, "gap_rates": [0.6738, 0.3276, 0.2592, 0.2158, 0.1674, 0.12, 0.0748, 0.061, 0.0552, 0.0492, 0.0474, 0.0464, 0.046, 0.0688, 0.0434, 0.9408, 0.907, 0.0388, 0.0372, 0.0364, 0.0356, 0.0338, 0.0322, 0.0316, 0.0316, 0.0318, 0.0384, 0.0388, 0.031, 0.0298, 0.029, 0.0278, 0.0266, 0.0258, 0.0252, 0.0242, 0.0262, 0.0274, 0.0276, 0.0242, 0.0232, 0.0234, 0.0312, 0.029, 0.0304, 0.0368, 0.0392, 0.0428, 0.0444, 0.0902, 0.0594, 0.0706, 0.0706, 0.0784, 0.076, 0.92, 0.9476, 0.8734, 0.6458, 0.2178, 0.1644, 0.1158, 0.7072, 0.068, 0.0602, 0.054, 0.0578, 0.0578, 0.0544, 0.059, 0.0544, 0.0536, 0.0526, 0.0532, 0.0536, 0.0546, 0.062, 0.0618, 0.0638, 0.0634, 0.0634, 0.064, 0.0646, 0.0652, 0.1318, 0.1118, 0.0864, 0.0842, 0.107, 0.1182, 0.1094, 0.9194, 0.1116, 0.0936, 0.945, 0.9244, 0.091, 0.0968, 0.1014, 0.1388, 0.126, 0.1102, 0.1086, 0.1114, 0.1152, 0.1196, 0.1226, 0.6158], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/SRF-TF.gap.json b/pfam_gap_rates/SRF-TF.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..70bcd1fc66f9cb0390307418f411cd2208bf2781
--- /dev/null
+++ b/pfam_gap_rates/SRF-TF.gap.json
@@ -0,0 +1 @@
+{"family": "SRF-TF", "n_seqs": 2540, "length": 48, "gap_rates": [0.3838582677165354, 0.13188976377952755, 0.10196850393700788, 0.08661417322834646, 0.07952755905511812, 0.0673228346456693, 0.06181102362204725, 0.05826771653543307, 0.047637795275590554, 0.04251968503937008, 0.03976377952755906, 0.03700787401574803, 0.031496062992125984, 0.02716535433070866, 0.022440944881889763, 0.021653543307086614, 0.02047244094488189, 0.02047244094488189, 0.018503937007874015, 0.01062992125984252, 0.010236220472440945, 0.00905511811023622, 0.005511811023622047, 0.0066929133858267716, 0.007874015748031496, 0.00826771653543307, 0.008661417322834646, 0.00905511811023622, 0.008661417322834646, 0.010236220472440945, 0.011023622047244094, 0.01141732283464567, 0.012992125984251968, 0.014960629921259842, 0.017716535433070866, 0.01811023622047244, 0.02047244094488189, 0.02283464566929134, 0.025984251968503937, 0.03622047244094488, 0.048818897637795275, 0.07322834645669292, 0.11338582677165354, 0.13858267716535433, 0.15275590551181104, 0.17519685039370078, 0.2078740157480315, 0.2377952755905512], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/SRP19.gap.json b/pfam_gap_rates/SRP19.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..391ab3a09293810c4ffe443197b4d3d20c4a874f
--- /dev/null
+++ b/pfam_gap_rates/SRP19.gap.json
@@ -0,0 +1 @@
+{"family": "SRP19", "n_seqs": 405, "length": 108, "gap_rates": [0.19753086419753085, 0.04691358024691358, 0.03950617283950617, 0.03950617283950617, 0.037037037037037035, 0.0345679012345679, 0.0345679012345679, 0.0345679012345679, 0.0345679012345679, 0.037037037037037035, 0.0345679012345679, 0.0345679012345679, 0.0345679012345679, 0.0345679012345679, 0.0345679012345679, 0.037037037037037035, 0.9185185185185185, 0.02962962962962963, 0.02962962962962963, 0.03209876543209877, 0.02962962962962963, 0.02962962962962963, 0.03209876543209877, 0.027160493827160494, 0.0345679012345679, 0.0345679012345679, 0.03950617283950617, 0.02962962962962963, 0.02962962962962963, 0.02962962962962963, 0.02962962962962963, 0.02962962962962963, 0.02962962962962963, 0.02962962962962963, 0.03209876543209877, 0.02962962962962963, 0.027160493827160494, 0.027160493827160494, 0.027160493827160494, 0.024691358024691357, 0.024691358024691357, 0.024691358024691357, 0.024691358024691357, 0.022222222222222223, 0.019753086419753086, 0.019753086419753086, 0.022222222222222223, 0.022222222222222223, 0.2518518518518518, 0.02962962962962963, 0.027160493827160494, 0.027160493827160494, 0.024691358024691357, 0.024691358024691357, 0.022222222222222223, 0.022222222222222223, 0.8518518518518519, 0.8617283950617284, 0.8592592592592593, 0.8123456790123457, 0.024691358024691357, 0.02962962962962963, 0.02962962962962963, 0.027160493827160494, 0.8938271604938272, 0.908641975308642, 0.9012345679012346, 0.8074074074074075, 0.027160493827160494, 0.0345679012345679, 0.03209876543209877, 0.03209876543209877, 0.03209876543209877, 0.0345679012345679, 0.0345679012345679, 0.9382716049382716, 0.9481481481481482, 0.945679012345679, 0.9333333333333333, 0.08888888888888889, 0.508641975308642, 0.291358024691358, 0.2938271604938272, 0.28888888888888886, 0.2716049382716049, 0.25679012345679014, 0.2518518518518518, 0.24938271604938272, 0.24938271604938272, 0.20246913580246914, 0.16296296296296298, 0.11358024691358025, 0.1111111111111111, 0.11604938271604938, 0.11604938271604938, 0.12345679012345678, 0.1308641975308642, 0.1308641975308642, 0.1382716049382716, 0.1382716049382716, 0.1506172839506173, 0.15555555555555556, 0.16049382716049382, 0.17037037037037037, 0.18024691358024691, 0.2271604938271605, 0.39753086419753086, 0.8345679012345679], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/SSDP.gap.json b/pfam_gap_rates/SSDP.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e49feeb51fbd55dc866f5e153341940b1831341d
--- /dev/null
+++ b/pfam_gap_rates/SSDP.gap.json
@@ -0,0 +1 @@
+{"family": "SSDP", "n_seqs": 107, "length": 346, "gap_rates": [0.4672897196261682, 0.4672897196261682, 0.4672897196261682, 0.4672897196261682, 0.4672897196261682, 0.45794392523364486, 0.45794392523364486, 0.45794392523364486, 0.4485981308411215, 0.4485981308411215, 0.4485981308411215, 0.4485981308411215, 0.4485981308411215, 0.4392523364485981, 0.7850467289719626, 0.7757009345794392, 0.7289719626168224, 0.8037383177570093, 0.8037383177570093, 0.8037383177570093, 0.8317757009345794, 0.8317757009345794, 0.8691588785046729, 0.8317757009345794, 0.8130841121495327, 0.8037383177570093, 0.8037383177570093, 0.8037383177570093, 0.411214953271028, 0.40186915887850466, 0.3925233644859813, 0.411214953271028, 0.411214953271028, 0.411214953271028, 0.6261682242990654, 0.4205607476635514, 0.3925233644859813, 0.3925233644859813, 0.38317757009345793, 0.37383177570093457, 0.35514018691588783, 0.3644859813084112, 0.35514018691588783, 0.35514018691588783, 0.34579439252336447, 0.3644859813084112, 0.3644859813084112, 0.3644859813084112, 0.34579439252336447, 0.34579439252336447, 0.34579439252336447, 0.34579439252336447, 0.9439252336448598, 0.37383177570093457, 0.34579439252336447, 0.3364485981308411, 0.3364485981308411, 0.8317757009345794, 0.8317757009345794, 0.8411214953271028, 0.9439252336448598, 0.8317757009345794, 0.8317757009345794, 0.8037383177570093, 0.5514018691588785, 0.5607476635514018, 0.5233644859813084, 0.5233644859813084, 0.7289719626168224, 0.7102803738317757, 0.7383177570093458, 0.5514018691588785, 0.5981308411214953, 0.5794392523364486, 0.5700934579439252, 0.5700934579439252, 0.9158878504672897, 0.5700934579439252, 0.5607476635514018, 0.5607476635514018, 0.5327102803738317, 0.5327102803738317, 0.5700934579439252, 0.7289719626168224, 0.6542056074766355, 0.9065420560747663, 0.5700934579439252, 0.5700934579439252, 0.5420560747663551, 0.514018691588785, 0.514018691588785, 0.4953271028037383, 0.4953271028037383, 0.7009345794392523, 0.5514018691588785, 0.34579439252336447, 0.3364485981308411, 0.35514018691588783, 0.35514018691588783, 0.9439252336448598, 0.35514018691588783, 0.35514018691588783, 0.35514018691588783, 0.35514018691588783, 0.35514018691588783, 0.3644859813084112, 0.35514018691588783, 0.35514018691588783, 0.35514018691588783, 0.3644859813084112, 0.3644859813084112, 0.3644859813084112, 0.3644859813084112, 0.35514018691588783, 0.38317757009345793, 0.3644859813084112, 0.3925233644859813, 0.7663551401869159, 0.7383177570093458, 0.6074766355140186, 0.5887850467289719, 0.5887850467289719, 0.3925233644859813, 0.38317757009345793, 0.7102803738317757, 0.7476635514018691, 0.7476635514018691, 0.40186915887850466, 0.3925233644859813, 0.5700934579439252, 0.37383177570093457, 0.37383177570093457, 0.3644859813084112, 0.37383177570093457, 0.37383177570093457, 0.37383177570093457, 0.4392523364485981, 0.37383177570093457, 0.3644859813084112, 0.3644859813084112, 0.40186915887850466, 0.38317757009345793, 0.38317757009345793, 0.9065420560747663, 0.9345794392523364, 0.9439252336448598, 0.9439252336448598, 0.9439252336448598, 0.9439252336448598, 0.9439252336448598, 0.9065420560747663, 0.9065420560747663, 0.40186915887850466, 0.411214953271028, 0.6355140186915887, 0.5233644859813084, 0.3925233644859813, 0.38317757009345793, 0.411214953271028, 0.38317757009345793, 0.38317757009345793, 0.37383177570093457, 0.40186915887850466, 0.3644859813084112, 0.37383177570093457, 0.3644859813084112, 0.3644859813084112, 0.37383177570093457, 0.3644859813084112, 0.38317757009345793, 0.7570093457943925, 0.7570093457943925, 0.411214953271028, 0.40186915887850466, 0.37383177570093457, 0.37383177570093457, 0.3925233644859813, 0.38317757009345793, 0.8598130841121495, 0.8411214953271028, 0.35514018691588783, 0.35514018691588783, 0.34579439252336447, 0.35514018691588783, 0.38317757009345793, 0.9345794392523364, 0.34579439252336447, 0.32710280373831774, 0.32710280373831774, 0.7850467289719626, 0.34579439252336447, 0.32710280373831774, 0.32710280373831774, 0.35514018691588783, 0.3925233644859813, 0.38317757009345793, 0.5514018691588785, 0.3644859813084112, 0.35514018691588783, 0.34579439252336447, 0.7570093457943925, 0.794392523364486, 0.9158878504672897, 0.9345794392523364, 0.9252336448598131, 0.897196261682243, 0.3644859813084112, 0.35514018691588783, 0.37383177570093457, 0.35514018691588783, 0.3644859813084112, 0.37383177570093457, 0.8504672897196262, 0.4205607476635514, 0.38317757009345793, 0.35514018691588783, 0.35514018691588783, 0.34579439252336447, 0.514018691588785, 0.38317757009345793, 0.35514018691588783, 0.35514018691588783, 0.34579439252336447, 0.35514018691588783, 0.42990654205607476, 0.35514018691588783, 0.45794392523364486, 0.38317757009345793, 0.37383177570093457, 0.37383177570093457, 0.37383177570093457, 0.3925233644859813, 0.3925233644859813, 0.3925233644859813, 0.3925233644859813, 0.38317757009345793, 0.38317757009345793, 0.38317757009345793, 0.37383177570093457, 0.3644859813084112, 0.35514018691588783, 0.35514018691588783, 0.3644859813084112, 0.35514018691588783, 0.40186915887850466, 0.37383177570093457, 0.3644859813084112, 0.3644859813084112, 0.34579439252336447, 0.34579439252336447, 0.35514018691588783, 0.7663551401869159, 0.794392523364486, 0.34579439252336447, 0.34579439252336447, 0.35514018691588783, 0.34579439252336447, 0.34579439252336447, 0.34579439252336447, 0.34579439252336447, 0.3364485981308411, 0.3364485981308411, 0.3364485981308411, 0.34579439252336447, 0.34579439252336447, 0.34579439252336447, 0.822429906542056, 0.34579439252336447, 0.35514018691588783, 0.35514018691588783, 0.35514018691588783, 0.38317757009345793, 0.38317757009345793, 0.3644859813084112, 0.3644859813084112, 0.3644859813084112, 0.3644859813084112, 0.4672897196261682, 0.4672897196261682, 0.4766355140186916, 0.514018691588785, 0.48598130841121495, 0.4672897196261682, 0.4672897196261682, 0.4672897196261682, 0.3925233644859813, 0.38317757009345793, 0.37383177570093457, 0.3644859813084112, 0.8785046728971962, 0.9439252336448598, 0.8785046728971962, 0.37383177570093457, 0.37383177570093457, 0.4672897196261682, 0.38317757009345793, 0.38317757009345793, 0.40186915887850466, 0.38317757009345793, 0.3644859813084112, 0.9345794392523364, 0.3644859813084112, 0.40186915887850466, 0.4392523364485981, 0.4392523364485981, 0.6261682242990654, 0.48598130841121495, 0.4766355140186916, 0.38317757009345793, 0.37383177570093457, 0.37383177570093457, 0.37383177570093457, 0.37383177570093457, 0.38317757009345793, 0.37383177570093457, 0.37383177570093457, 0.37383177570093457, 0.37383177570093457, 0.37383177570093457, 0.37383177570093457, 0.38317757009345793, 0.38317757009345793, 0.38317757009345793, 0.40186915887850466, 0.5981308411214953, 0.38317757009345793, 0.38317757009345793, 0.3925233644859813, 0.3925233644859813, 0.3925233644859813, 0.5514018691588785, 0.5887850467289719, 0.7383177570093458, 0.6074766355140186, 0.5887850467289719, 0.4672897196261682, 0.40186915887850466, 0.40186915887850466, 0.40186915887850466, 0.411214953271028, 0.411214953271028, 0.411214953271028, 0.411214953271028, 0.411214953271028, 0.42990654205607476, 0.45794392523364486], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/STE3.gap.json b/pfam_gap_rates/STE3.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..581f3756a750ec7a8e0d7829a99fee8af0283e1b
--- /dev/null
+++ b/pfam_gap_rates/STE3.gap.json
@@ -0,0 +1 @@
+{"family": "STE3", "n_seqs": 303, "length": 303, "gap_rates": [0.6600660066006601, 0.23432343234323433, 0.1716171617161716, 0.15841584158415842, 0.1485148514851485, 0.1419141914191419, 0.1419141914191419, 0.1419141914191419, 0.1419141914191419, 0.1419141914191419, 0.1419141914191419, 0.1419141914191419, 0.1419141914191419, 0.13861386138613863, 0.1353135313531353, 0.1353135313531353, 0.1353135313531353, 0.132013201320132, 0.132013201320132, 0.12871287128712872, 0.1254125412541254, 0.12211221122112212, 0.1188118811881188, 0.11551155115511551, 0.11551155115511551, 0.11221122112211221, 0.10891089108910891, 0.10891089108910891, 0.10561056105610561, 0.10561056105610561, 0.10561056105610561, 0.10561056105610561, 0.10561056105610561, 0.10561056105610561, 0.10231023102310231, 0.10231023102310231, 0.10231023102310231, 0.10231023102310231, 0.10231023102310231, 0.09900990099009901, 0.09900990099009901, 0.09570957095709572, 0.09900990099009901, 0.10561056105610561, 0.10561056105610561, 0.10891089108910891, 0.10561056105610561, 0.10231023102310231, 0.09900990099009901, 0.09570957095709572, 0.10561056105610561, 0.10231023102310231, 0.09900990099009901, 0.09900990099009901, 0.09900990099009901, 0.09900990099009901, 0.7425742574257426, 0.7524752475247525, 0.7392739273927392, 0.09900990099009901, 0.10231023102310231, 0.10231023102310231, 0.09900990099009901, 0.09570957095709572, 0.09570957095709572, 0.09570957095709572, 0.09900990099009901, 0.09570957095709572, 0.09570957095709572, 0.09570957095709572, 0.09570957095709572, 0.0891089108910891, 0.0891089108910891, 0.0924092409240924, 0.09570957095709572, 0.09570957095709572, 0.09570957095709572, 0.09570957095709572, 0.09570957095709572, 0.09570957095709572, 0.09570957095709572, 0.09570957095709572, 0.0924092409240924, 0.0924092409240924, 0.0924092409240924, 0.0924092409240924, 0.0924092409240924, 0.0924092409240924, 0.0924092409240924, 0.0924092409240924, 0.09570957095709572, 0.13861386138613863, 0.1254125412541254, 0.759075907590759, 0.1188118811881188, 0.11551155115511551, 0.11221122112211221, 0.1188118811881188, 0.10891089108910891, 0.10231023102310231, 0.10231023102310231, 0.09900990099009901, 0.12871287128712872, 0.8679867986798679, 0.0924092409240924, 0.0924092409240924, 0.09570957095709572, 0.0924092409240924, 0.09900990099009901, 0.09900990099009901, 0.09570957095709572, 0.09570957095709572, 0.0924092409240924, 0.0924092409240924, 0.0924092409240924, 0.09570957095709572, 0.10231023102310231, 0.09900990099009901, 0.09570957095709572, 0.0924092409240924, 0.09570957095709572, 0.09570957095709572, 0.09570957095709572, 0.08250825082508251, 0.08250825082508251, 0.0858085808580858, 0.0891089108910891, 0.09570957095709572, 0.0858085808580858, 0.0924092409240924, 0.0924092409240924, 0.0924092409240924, 0.0924092409240924, 0.0924092409240924, 0.0924092409240924, 0.0924092409240924, 0.0924092409240924, 0.09570957095709572, 0.09570957095709572, 0.09570957095709572, 0.09570957095709572, 0.09900990099009901, 0.09900990099009901, 0.09900990099009901, 0.09900990099009901, 0.09900990099009901, 0.09900990099009901, 0.09900990099009901, 0.09900990099009901, 0.09900990099009901, 0.09900990099009901, 0.10231023102310231, 0.10231023102310231, 0.10231023102310231, 0.10231023102310231, 0.10561056105610561, 0.10231023102310231, 0.09900990099009901, 0.09900990099009901, 0.09900990099009901, 0.10561056105610561, 0.10231023102310231, 0.10231023102310231, 0.09900990099009901, 0.09900990099009901, 0.09900990099009901, 0.09900990099009901, 0.09900990099009901, 0.09900990099009901, 0.09570957095709572, 0.0891089108910891, 0.0924092409240924, 0.10561056105610561, 0.10561056105610561, 0.10891089108910891, 0.10891089108910891, 0.10891089108910891, 0.10891089108910891, 0.10891089108910891, 0.11221122112211221, 0.11221122112211221, 0.10561056105610561, 0.10561056105610561, 0.10891089108910891, 0.10891089108910891, 0.10891089108910891, 0.10891089108910891, 0.12871287128712872, 0.1188118811881188, 0.11551155115511551, 0.11221122112211221, 0.1254125412541254, 0.9405940594059405, 0.9042904290429042, 0.5445544554455446, 0.19801980198019803, 0.14521452145214522, 0.1419141914191419, 0.1419141914191419, 0.1353135313531353, 0.10231023102310231, 0.09900990099009901, 0.09900990099009901, 0.09900990099009901, 0.09900990099009901, 0.10231023102310231, 0.10231023102310231, 0.10231023102310231, 0.09900990099009901, 0.09900990099009901, 0.09900990099009901, 0.09900990099009901, 0.09900990099009901, 0.09900990099009901, 0.09900990099009901, 0.10231023102310231, 0.09900990099009901, 0.10231023102310231, 0.09900990099009901, 0.09900990099009901, 0.09900990099009901, 0.10231023102310231, 0.09900990099009901, 0.09900990099009901, 0.09900990099009901, 0.09900990099009901, 0.09900990099009901, 0.10561056105610561, 0.09900990099009901, 0.132013201320132, 0.1353135313531353, 0.16831683168316833, 0.25412541254125415, 0.858085808580858, 0.23102310231023102, 0.20132013201320131, 0.2145214521452145, 0.11551155115511551, 0.11221122112211221, 0.11551155115511551, 0.11221122112211221, 0.11221122112211221, 0.10561056105610561, 0.10561056105610561, 0.10561056105610561, 0.10561056105610561, 0.8547854785478548, 0.9306930693069307, 0.9207920792079208, 0.7755775577557755, 0.10891089108910891, 0.10891089108910891, 0.10891089108910891, 0.10891089108910891, 0.10891089108910891, 0.10891089108910891, 0.10891089108910891, 0.10891089108910891, 0.18151815181518152, 0.2145214521452145, 0.21122112211221122, 0.9141914191419142, 0.22442244224422442, 0.22772277227722773, 0.27722772277227725, 0.3102310231023102, 0.44554455445544555, 0.41254125412541254, 0.3795379537953795, 0.35313531353135313, 0.3432343234323432, 0.32673267326732675, 0.29372937293729373, 0.2508250825082508, 0.22772277227722773, 0.1848184818481848, 0.9438943894389439, 0.11551155115511551, 0.11551155115511551, 0.11551155115511551, 0.1188118811881188, 0.1188118811881188, 0.1188118811881188, 0.1188118811881188, 0.11551155115511551, 0.11551155115511551, 0.11551155115511551, 0.11551155115511551, 0.1188118811881188, 0.1188118811881188, 0.12211221122112212, 0.132013201320132, 0.132013201320132, 0.1353135313531353, 0.1353135313531353, 0.1353135313531353, 0.13861386138613863, 0.1419141914191419, 0.1485148514851485, 0.1551155115511551, 0.1617161716171617, 0.1617161716171617, 0.16831683168316833], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/STPPase_N.gap.json b/pfam_gap_rates/STPPase_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f768e105250ca20be4d6ae1d5191539817de3716
--- /dev/null
+++ b/pfam_gap_rates/STPPase_N.gap.json
@@ -0,0 +1 @@
+{"family": "STPPase_N", "n_seqs": 1026, "length": 50, "gap_rates": [0.13742690058479531, 0.11695906432748537, 0.09259259259259259, 0.07992202729044834, 0.07797270955165692, 0.07212475633528265, 0.07017543859649122, 0.06627680311890838, 0.06530214424951267, 0.0594541910331384, 0.09551656920077972, 0.08674463937621832, 0.07504873294346978, 0.9259259259259259, 0.6910331384015594, 0.050682261208576995, 0.05263157894736842, 0.04093567251461988, 0.26900584795321636, 0.028265107212475632, 0.023391812865497075, 0.01949317738791423, 0.01949317738791423, 0.003898635477582846, 0.003898635477582846, 0.0029239766081871343, 0.001949317738791423, 0.001949317738791423, 0.001949317738791423, 0.001949317738791423, 0.001949317738791423, 0.0, 0.0, 0.0009746588693957114, 0.0009746588693957114, 0.0009746588693957114, 0.0, 0.0, 0.0, 0.001949317738791423, 0.001949317738791423, 0.001949317738791423, 0.001949317738791423, 0.0029239766081871343, 0.003898635477582846, 0.005847953216374269, 0.005847953216374269, 0.008771929824561403, 0.017543859649122806, 0.2709551656920078], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/SUKH_6.gap.json b/pfam_gap_rates/SUKH_6.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..797acf117e4a887ad3c4836ed44b38a4efdb871d
--- /dev/null
+++ b/pfam_gap_rates/SUKH_6.gap.json
@@ -0,0 +1 @@
+{"family": "SUKH_6", "n_seqs": 302, "length": 149, "gap_rates": [0.6258278145695364, 0.3509933774834437, 0.2052980132450331, 0.1423841059602649, 0.1291390728476821, 0.11589403973509933, 0.11258278145695365, 0.11258278145695365, 0.10264900662251655, 0.09271523178807947, 0.09271523178807947, 0.08609271523178808, 0.07947019867549669, 0.0695364238410596, 0.046357615894039736, 0.039735099337748346, 0.03642384105960265, 0.03642384105960265, 0.033112582781456956, 0.033112582781456956, 0.033112582781456956, 0.033112582781456956, 0.033112582781456956, 0.033112582781456956, 0.033112582781456956, 0.033112582781456956, 0.033112582781456956, 0.033112582781456956, 0.03642384105960265, 0.03642384105960265, 0.9337748344370861, 0.9139072847682119, 0.04304635761589404, 0.039735099337748346, 0.03642384105960265, 0.03642384105960265, 0.039735099337748346, 0.03642384105960265, 0.046357615894039736, 0.07947019867549669, 0.056291390728476824, 0.07947019867549669, 0.056291390728476824, 0.046357615894039736, 0.052980132450331126, 0.059602649006622516, 0.052980132450331126, 0.04966887417218543, 0.059602649006622516, 0.052980132450331126, 0.052980132450331126, 0.076158940397351, 0.06622516556291391, 0.06622516556291391, 0.0728476821192053, 0.07947019867549669, 0.076158940397351, 0.1390728476821192, 0.152317880794702, 0.2185430463576159, 0.2052980132450331, 0.3079470198675497, 0.31125827814569534, 0.3443708609271523, 0.3576158940397351, 0.3576158940397351, 0.34105960264900664, 0.5496688741721855, 0.6026490066225165, 0.6754966887417219, 0.7417218543046358, 0.890728476821192, 0.9105960264900662, 0.9172185430463576, 0.9006622516556292, 0.7516556291390728, 0.7185430463576159, 0.6556291390728477, 0.5728476821192053, 0.5165562913907285, 0.17218543046357615, 0.16556291390728478, 0.1423841059602649, 0.1291390728476821, 0.10927152317880795, 0.10264900662251655, 0.07947019867549669, 0.033112582781456956, 0.033112582781456956, 0.033112582781456956, 0.029801324503311258, 0.029801324503311258, 0.029801324503311258, 0.029801324503311258, 0.033112582781456956, 0.033112582781456956, 0.09933774834437085, 0.8973509933774835, 0.8377483443708609, 0.039735099337748346, 0.033112582781456956, 0.9337748344370861, 0.04966887417218543, 0.039735099337748346, 0.039735099337748346, 0.03642384105960265, 0.03642384105960265, 0.03642384105960265, 0.04304635761589404, 0.6390728476821192, 0.7218543046357616, 0.44370860927152317, 0.23509933774834438, 0.17549668874172186, 0.1390728476821192, 0.056291390728476824, 0.04304635761589404, 0.04304635761589404, 0.052980132450331126, 0.04966887417218543, 0.04966887417218543, 0.04966887417218543, 0.056291390728476824, 0.7284768211920529, 0.8410596026490066, 0.9205298013245033, 0.9238410596026491, 0.9039735099337748, 0.8013245033112583, 0.6854304635761589, 0.4470198675496689, 0.1456953642384106, 0.1291390728476821, 0.10927152317880795, 0.10927152317880795, 0.12251655629139073, 0.1291390728476821, 0.11258278145695365, 0.11920529801324503, 0.11920529801324503, 0.1291390728476821, 0.1423841059602649, 0.1456953642384106, 0.152317880794702, 0.1490066225165563, 0.15562913907284767, 0.17880794701986755, 0.2119205298013245, 0.30132450331125826], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/SURF6.gap.json b/pfam_gap_rates/SURF6.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..324c31363c35f953c77bf04db3f1d6f0d65942b5
--- /dev/null
+++ b/pfam_gap_rates/SURF6.gap.json
@@ -0,0 +1 @@
+{"family": "SURF6", "n_seqs": 316, "length": 261, "gap_rates": [0.7468354430379747, 0.6107594936708861, 0.5537974683544303, 0.509493670886076, 0.47468354430379744, 0.43670886075949367, 0.4208860759493671, 0.39556962025316456, 0.3575949367088608, 0.33860759493670883, 0.31962025316455694, 0.870253164556962, 0.29430379746835444, 0.2879746835443038, 0.27848101265822783, 0.2626582278481013, 0.2563291139240506, 0.24050632911392406, 0.23417721518987342, 0.2310126582278481, 0.21518987341772153, 0.21518987341772153, 0.19936708860759494, 0.189873417721519, 0.18354430379746836, 0.18670886075949367, 0.18670886075949367, 0.18670886075949367, 0.18670886075949367, 0.189873417721519, 0.1930379746835443, 0.1930379746835443, 0.20569620253164558, 0.2088607594936709, 0.1962025316455696, 0.7943037974683544, 0.8259493670886076, 0.8575949367088608, 0.8924050632911392, 0.9113924050632911, 0.9240506329113924, 0.9367088607594937, 0.9430379746835443, 0.9493670886075949, 0.9367088607594937, 0.9335443037974683, 0.9177215189873418, 0.8955696202531646, 0.879746835443038, 0.8417721518987342, 0.8006329113924051, 0.7848101265822784, 0.5854430379746836, 0.6582278481012658, 0.6613924050632911, 0.6772151898734177, 0.7025316455696202, 0.8829113924050633, 0.7310126582278481, 0.8829113924050633, 0.4651898734177215, 0.7025316455696202, 0.7468354430379747, 0.8006329113924051, 0.8386075949367089, 0.8892405063291139, 0.9177215189873418, 0.9367088607594937, 0.9493670886075949, 0.9335443037974683, 0.8987341772151899, 0.870253164556962, 0.8291139240506329, 0.7753164556962026, 0.7183544303797469, 0.6772151898734177, 0.36075949367088606, 0.34810126582278483, 0.2879746835443038, 0.25, 0.20569620253164558, 0.1930379746835443, 0.16772151898734178, 0.14873417721518986, 0.14556962025316456, 0.13924050632911392, 0.1360759493670886, 0.12974683544303797, 0.12341772151898735, 0.11708860759493671, 0.11708860759493671, 0.11392405063291139, 0.11392405063291139, 0.11075949367088607, 0.11075949367088607, 0.11075949367088607, 0.11075949367088607, 0.11075949367088607, 0.10759493670886076, 0.10126582278481013, 0.09177215189873418, 0.08860759493670886, 0.08544303797468354, 0.08860759493670886, 0.08544303797468354, 0.08227848101265822, 0.08227848101265822, 0.08544303797468354, 0.08227848101265822, 0.08544303797468354, 0.08544303797468354, 0.08544303797468354, 0.08544303797468354, 0.6075949367088608, 0.6518987341772152, 0.8354430379746836, 0.9240506329113924, 0.9493670886075949, 0.870253164556962, 0.6867088607594937, 0.6360759493670886, 0.5822784810126582, 0.18354430379746836, 0.33860759493670883, 0.45569620253164556, 0.40822784810126583, 0.39556962025316456, 0.3449367088607595, 0.2310126582278481, 0.1518987341772152, 0.12974683544303797, 0.13291139240506328, 0.12025316455696203, 0.8829113924050633, 0.9018987341772152, 0.9240506329113924, 0.9335443037974683, 0.9082278481012658, 0.8860759493670886, 0.8765822784810127, 0.2911392405063291, 0.25, 0.22468354430379747, 0.21835443037974683, 0.47151898734177217, 0.3860759493670886, 0.11392405063291139, 0.08544303797468354, 0.06962025316455696, 0.06962025316455696, 0.07278481012658228, 0.06962025316455696, 0.06962025316455696, 0.07278481012658228, 0.06645569620253164, 0.06329113924050633, 0.08544303797468354, 0.06962025316455696, 0.060126582278481014, 0.06329113924050633, 0.056962025316455694, 0.056962025316455694, 0.056962025316455694, 0.08227848101265822, 0.08227848101265822, 0.6677215189873418, 0.9240506329113924, 0.6993670886075949, 0.5822784810126582, 0.056962025316455694, 0.056962025316455694, 0.056962025316455694, 0.05063291139240506, 0.06645569620253164, 0.06962025316455696, 0.06645569620253164, 0.06962025316455696, 0.05063291139240506, 0.05063291139240506, 0.04746835443037975, 0.04430379746835443, 0.04430379746835443, 0.04746835443037975, 0.04430379746835443, 0.04430379746835443, 0.04430379746835443, 0.0379746835443038, 0.03481012658227848, 0.03481012658227848, 0.03481012658227848, 0.03481012658227848, 0.03481012658227848, 0.03481012658227848, 0.0379746835443038, 0.03481012658227848, 0.028481012658227847, 0.03164556962025317, 0.03481012658227848, 0.028481012658227847, 0.028481012658227847, 0.03164556962025317, 0.03164556962025317, 0.03164556962025317, 0.03164556962025317, 0.03164556962025317, 0.03164556962025317, 0.028481012658227847, 0.028481012658227847, 0.028481012658227847, 0.028481012658227847, 0.028481012658227847, 0.028481012658227847, 0.028481012658227847, 0.03164556962025317, 0.03164556962025317, 0.03164556962025317, 0.03164556962025317, 0.03164556962025317, 0.028481012658227847, 0.028481012658227847, 0.028481012658227847, 0.03164556962025317, 0.03164556962025317, 0.0379746835443038, 0.04113924050632911, 0.04430379746835443, 0.04430379746835443, 0.04430379746835443, 0.04430379746835443, 0.04746835443037975, 0.04746835443037975, 0.04430379746835443, 0.04430379746835443, 0.04430379746835443, 0.04430379746835443, 0.04430379746835443, 0.04746835443037975, 0.05063291139240506, 0.060126582278481014, 0.060126582278481014, 0.060126582278481014, 0.060126582278481014, 0.060126582278481014, 0.060126582278481014, 0.06329113924050633, 0.06329113924050633, 0.06962025316455696, 0.08544303797468354, 0.08544303797468354, 0.08860759493670886, 0.08860759493670886, 0.09177215189873418, 0.09177215189873418, 0.0949367088607595, 0.0949367088607595, 0.10759493670886076, 0.12974683544303797, 0.16139240506329114, 0.27848101265822783, 0.4430379746835443, 0.7563291139240507], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Sad1_UNC.gap.json b/pfam_gap_rates/Sad1_UNC.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..896c0a2f2617f51b9dd5b8a956819403cd13b821
--- /dev/null
+++ b/pfam_gap_rates/Sad1_UNC.gap.json
@@ -0,0 +1 @@
+{"family": "Sad1_UNC", "n_seqs": 949, "length": 157, "gap_rates": [0.7123287671232876, 0.6259220231822972, 0.5426765015806112, 0.45626975763962063, 0.3993677555321391, 0.3424657534246575, 0.3013698630136986, 0.2845100105374078, 0.2760800842992624, 0.2665964172813488, 0.25500526870389884, 0.24973656480505796, 0.24446786090621708, 0.24025289778714437, 0.6280295047418335, 0.6048472075869337, 0.5763962065331928, 0.19915700737618547, 0.1791359325605901, 0.16754478398314016, 0.15489989462592202, 0.15384615384615385, 0.15279241306638566, 0.47418335089567965, 0.3203371970495258, 0.3171759747102213, 0.25500526870389884, 0.1464699683877766, 0.1422550052687039, 0.2971548998946259, 0.2697576396206533, 0.12539515279241306, 0.11907270811380401, 0.11801896733403583, 0.11696522655426765, 0.11696522655426765, 0.11696522655426765, 0.11696522655426765, 0.11591148577449947, 0.1148577449947313, 0.11169652265542676, 0.11169652265542676, 0.11169652265542676, 0.11064278187565858, 0.11064278187565858, 0.11064278187565858, 0.1095890410958904, 0.11064278187565858, 0.1095890410958904, 0.10748155953635406, 0.10748155953635406, 0.1053740779768177, 0.1053740779768177, 0.5626975763962065, 0.5553213909378293, 0.5563751317175974, 0.5447839831401475, 0.7534246575342466, 0.7997892518440464, 0.5763962065331928, 0.11064278187565858, 0.9409905163329821, 0.11064278187565858, 0.11064278187565858, 0.11169652265542676, 0.10853530031612224, 0.10642781875658588, 0.1053740779768177, 0.10432033719704953, 0.10432033719704953, 0.1053740779768177, 0.10221285563751317, 0.1053740779768177, 0.10642781875658588, 0.11169652265542676, 0.11169652265542676, 0.1148577449947313, 0.11801896733403583, 0.14014752370916755, 0.14120126448893572, 0.2191780821917808, 0.6533192834562698, 0.863013698630137, 0.8935721812434141, 0.9241306638566913, 0.9420442571127503, 0.9483667017913593, 0.9494204425711275, 0.946259220231823, 0.9399367755532139, 0.8977871443624869, 0.8872497365648051, 0.8440463645943098, 0.5911485774499473, 0.12118018967334036, 0.1095890410958904, 0.09799789251844046, 0.09694415173867228, 0.10010537407797682, 0.09272918861959958, 0.09483667017913593, 0.09483667017913593, 0.4488935721812434, 0.8998946259220232, 0.13487881981032665, 0.10326659641728135, 0.10432033719704953, 0.10748155953635406, 0.11064278187565858, 0.11064278187565858, 0.11064278187565858, 0.1833508956796628, 0.1095890410958904, 0.10642781875658588, 0.10642781875658588, 0.10642781875658588, 0.10853530031612224, 0.1095890410958904, 0.11275026343519494, 0.12644889357218125, 0.4910432033719705, 0.32982086406743943, 0.7934668071654373, 0.9325605900948367, 0.8556375131717597, 0.6996838777660696, 0.1285563751317176, 0.1232876712328767, 0.11801896733403583, 0.11696522655426765, 0.12012644889357219, 0.1601685985247629, 0.15700737618545837, 0.12223393045310854, 0.12434141201264488, 0.1232876712328767, 0.12223393045310854, 0.12223393045310854, 0.1232876712328767, 0.9093782929399368, 0.9020021074815595, 0.1232876712328767, 0.1232876712328767, 0.12434141201264488, 0.2297154899894626, 0.1285563751317176, 0.12961011591148577, 0.13066385669125394, 0.13066385669125394, 0.1327713382507903, 0.1327713382507903, 0.13487881981032665, 0.1380400421496312, 0.1422550052687039, 0.1506849315068493, 0.1601685985247629, 0.30979978925184404], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Sec62.gap.json b/pfam_gap_rates/Sec62.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..68765275a3b4205dcb5233e2c7044805ee365d0f
--- /dev/null
+++ b/pfam_gap_rates/Sec62.gap.json
@@ -0,0 +1 @@
+{"family": "Sec62", "n_seqs": 314, "length": 237, "gap_rates": [0.6910828025477707, 0.5700636942675159, 0.5286624203821656, 0.47770700636942676, 0.46178343949044587, 0.4554140127388535, 0.44904458598726116, 0.4394904458598726, 0.4394904458598726, 0.4394904458598726, 0.4394904458598726, 0.43630573248407645, 0.43630573248407645, 0.4299363057324841, 0.42356687898089174, 0.42356687898089174, 0.42038216560509556, 0.4171974522292994, 0.4171974522292994, 0.4171974522292994, 0.4171974522292994, 0.42038216560509556, 0.4171974522292994, 0.4140127388535032, 0.4171974522292994, 0.44904458598726116, 0.4681528662420382, 0.4840764331210191, 0.6878980891719745, 0.49044585987261147, 0.4299363057324841, 0.4012738853503185, 0.39171974522292996, 0.37579617834394907, 0.36942675159235666, 0.35987261146496813, 0.35987261146496813, 0.3471337579617834, 0.3535031847133758, 0.42038216560509556, 0.37579617834394907, 0.3662420382165605, 0.3535031847133758, 0.34076433121019106, 0.33121019108280253, 0.32802547770700635, 0.33121019108280253, 0.32802547770700635, 0.31528662420382164, 0.321656050955414, 0.3503184713375796, 0.3503184713375796, 0.34394904458598724, 0.32802547770700635, 0.3184713375796178, 0.321656050955414, 0.30254777070063693, 0.30254777070063693, 0.29936305732484075, 0.30254777070063693, 0.30254777070063693, 0.3089171974522293, 0.321656050955414, 0.33121019108280253, 0.3503184713375796, 0.36942675159235666, 0.45222929936305734, 0.7070063694267515, 0.7420382165605095, 0.60828025477707, 0.8407643312101911, 0.8726114649681529, 0.89171974522293, 0.910828025477707, 0.9235668789808917, 0.9331210191082803, 0.9363057324840764, 0.9426751592356688, 0.9363057324840764, 0.9299363057324841, 0.9171974522292994, 0.9012738853503185, 0.8885350318471338, 0.8662420382165605, 0.8312101910828026, 0.4585987261146497, 0.3471337579617834, 0.2484076433121019, 0.2229299363057325, 0.1942675159235669, 0.17197452229299362, 0.1592356687898089, 0.14012738853503184, 0.1178343949044586, 0.11146496815286625, 0.10191082802547771, 0.09554140127388536, 0.07643312101910828, 0.07643312101910828, 0.07006369426751592, 0.05732484076433121, 0.06369426751592357, 0.050955414012738856, 0.044585987261146494, 0.044585987261146494, 0.044585987261146494, 0.589171974522293, 0.9490445859872612, 0.03503184713375796, 0.03503184713375796, 0.03503184713375796, 0.03184713375796178, 0.03184713375796178, 0.03184713375796178, 0.03184713375796178, 0.03184713375796178, 0.03184713375796178, 0.03184713375796178, 0.03184713375796178, 0.03184713375796178, 0.8503184713375797, 0.03184713375796178, 0.028662420382165606, 0.025477707006369428, 0.025477707006369428, 0.022292993630573247, 0.022292993630573247, 0.022292993630573247, 0.022292993630573247, 0.022292993630573247, 0.025477707006369428, 0.025477707006369428, 0.01910828025477707, 0.022292993630573247, 0.022292993630573247, 0.022292993630573247, 0.01910828025477707, 0.01910828025477707, 0.01910828025477707, 0.01910828025477707, 0.025477707006369428, 0.025477707006369428, 0.025477707006369428, 0.028662420382165606, 0.028662420382165606, 0.028662420382165606, 0.028662420382165606, 0.028662420382165606, 0.028662420382165606, 0.03184713375796178, 0.03184713375796178, 0.03821656050955414, 0.03821656050955414, 0.03821656050955414, 0.03821656050955414, 0.03821656050955414, 0.08280254777070063, 0.09872611464968153, 0.10509554140127389, 0.09235668789808917, 0.10828025477707007, 0.10191082802547771, 0.07006369426751592, 0.03821656050955414, 0.03821656050955414, 0.03503184713375796, 0.044585987261146494, 0.041401273885350316, 0.050955414012738856, 0.09872611464968153, 0.11146496815286625, 0.10191082802547771, 0.054140127388535034, 0.03821656050955414, 0.03503184713375796, 0.041401273885350316, 0.041401273885350316, 0.041401273885350316, 0.041401273885350316, 0.044585987261146494, 0.044585987261146494, 0.044585987261146494, 0.044585987261146494, 0.044585987261146494, 0.04777070063694268, 0.07643312101910828, 0.10191082802547771, 0.09872611464968153, 0.08917197452229299, 0.6592356687898089, 0.6496815286624203, 0.054140127388535034, 0.03821656050955414, 0.03821656050955414, 0.03821656050955414, 0.03821656050955414, 0.041401273885350316, 0.044585987261146494, 0.04777070063694268, 0.9267515923566879, 0.04777070063694268, 0.09235668789808917, 0.12738853503184713, 0.1337579617834395, 0.13694267515923567, 0.13694267515923567, 0.15605095541401273, 0.1592356687898089, 0.16560509554140126, 0.16560509554140126, 0.16560509554140126, 0.16878980891719744, 0.16560509554140126, 0.16878980891719744, 0.17197452229299362, 0.18152866242038215, 0.7707006369426752, 0.21656050955414013, 0.321656050955414, 0.28662420382165604, 0.9235668789808917, 0.8248407643312102, 0.3375796178343949, 0.35668789808917195, 0.3503184713375796, 0.3503184713375796, 0.3630573248407643, 0.37579617834394907, 0.39171974522292996, 0.42038216560509556, 0.44904458598726116, 0.5031847133757962, 0.5382165605095541, 0.5955414012738853, 0.6942675159235668, 0.7961783439490446, 0.9140127388535032], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/SecE.gap.json b/pfam_gap_rates/SecE.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c9e1a4684f0004df64455b51bcb4c0e0f84282f5
--- /dev/null
+++ b/pfam_gap_rates/SecE.gap.json
@@ -0,0 +1 @@
+{"family": "SecE", "n_seqs": 2444, "length": 55, "gap_rates": [0.8306055646481179, 0.19476268412438624, 0.08019639934533551, 0.03968903436988543, 0.02823240589198036, 0.019230769230769232, 0.011865793780687398, 0.010229132569558102, 0.008183306055646482, 0.006955810147299509, 0.0028641571194762683, 0.0028641571194762683, 0.9451718494271686, 0.0024549918166939444, 0.0024549918166939444, 0.0020458265139116204, 0.0020458265139116204, 0.0020458265139116204, 0.0012274959083469722, 0.0016366612111292963, 0.0016366612111292963, 0.0008183306055646482, 0.0004091653027823241, 0.0004091653027823241, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0004091653027823241, 0.0004091653027823241, 0.0004091653027823241, 0.0004091653027823241, 0.0004091653027823241, 0.0008183306055646482, 0.0008183306055646482, 0.0016366612111292963, 0.0024549918166939444, 0.0028641571194762683, 0.0032733224222585926, 0.0036824877250409165, 0.004909983633387889, 0.007364975450081833, 0.008183306055646482, 0.009819967266775777, 0.011456628477905073, 0.014320785597381341, 0.023322422258592473, 0.030278232405891982, 0.060147299509001634, 0.16775777414075285, 0.31382978723404253, 0.513911620294599], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Secretin_N.gap.json b/pfam_gap_rates/Secretin_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..238cb5bd4ac55c24913744bf8ec963b76c59e874
--- /dev/null
+++ b/pfam_gap_rates/Secretin_N.gap.json
@@ -0,0 +1 @@
+{"family": "Secretin_N", "n_seqs": 1701, "length": 131, "gap_rates": [0.540270429159318, 0.21457965902410348, 0.07172251616696061, 0.03233392122281011, 0.025279247501469725, 0.021164021164021163, 0.019988242210464434, 0.017048794826572605, 0.015873015873015872, 0.015285126396237508, 0.015285126396237508, 0.015285126396237508, 0.014697236919459141, 0.014697236919459141, 0.015285126396237508, 0.015285126396237508, 0.015285126396237508, 0.015873015873015872, 0.015873015873015872, 0.01646090534979424, 0.015873015873015872, 0.017048794826572605, 0.40152851263962375, 0.4432686654908877, 0.47619047619047616, 0.5161669606114051, 0.562610229276896, 0.5914168136390359, 0.6278659611992945, 0.6625514403292181, 0.6437389770723104, 0.6872427983539094, 0.7048794826572604, 0.7248677248677249, 0.7401528512639624, 0.7530864197530864, 0.7648442092886537, 0.7730746619635509, 0.7865961199294532, 0.7977660199882423, 0.8083480305702528, 0.8148148148148148, 0.8283362727807172, 0.8377425044091711, 0.8500881834215167, 0.8700764256319812, 0.8853615520282186, 0.8947677836566725, 0.9065255731922398, 0.9129923574368018, 0.921222810111699, 0.9265138154027043, 0.9329805996472663, 0.9382716049382716, 0.9435626102292769, 0.9447383891828336, 0.940623162845385, 0.9347442680776014, 0.9312169312169312, 0.9223985890652557, 0.9188712522045855, 0.9094650205761317, 0.8994708994708994, 0.8918283362727807, 0.8747795414462081, 0.8589065255731922, 0.842445620223398, 0.8330393885949442, 0.823045267489712, 0.811875367430923, 0.8036449147560258, 0.7924750146972369, 0.781305114638448, 0.7683715461493239, 0.7601410934744268, 0.746031746031746, 0.7366255144032922, 0.7142857142857143, 0.6931216931216931, 0.6778365667254557, 0.6102292768959435, 0.5584950029394474, 0.4991181657848324, 0.46678424456202233, 0.4332745443856555, 0.4056437389770723, 0.37272192827748385, 0.31452087007642565, 0.28336272780717225, 0.2292768959435626, 0.2087007642563198, 0.026455026455026454, 0.007054673721340388, 0.00411522633744856, 0.0029394473838918285, 0.001763668430335097, 0.0, 0.0, 0.0, 0.0, 0.0005878894767783657, 0.01352145796590241, 0.012345679012345678, 0.0011757789535567313, 0.0005878894767783657, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0005878894767783657, 0.0011757789535567313, 0.0011757789535567313, 0.001763668430335097, 0.001763668430335097, 0.001763668430335097, 0.001763668430335097, 0.001763668430335097, 0.0023515579071134627, 0.0023515579071134627, 0.0023515579071134627, 0.0023515579071134627, 0.0029394473838918285, 0.005291005291005291, 0.006466784244562022, 0.00823045267489712, 0.0205761316872428, 0.078777189888301, 0.20458553791887124, 0.35390946502057613, 0.4897119341563786], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/SelA.gap.json b/pfam_gap_rates/SelA.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..57d1b2b857611dc47eb0fd2d750145423ffa2b65
--- /dev/null
+++ b/pfam_gap_rates/SelA.gap.json
@@ -0,0 +1 @@
+{"family": "SelA", "n_seqs": 565, "length": 373, "gap_rates": [0.23893805309734514, 0.17345132743362832, 0.17345132743362832, 0.17345132743362832, 0.17345132743362832, 0.17345132743362832, 0.17345132743362832, 0.17876106194690267, 0.23008849557522124, 0.2247787610619469, 0.16991150442477876, 0.16991150442477876, 0.16991150442477876, 0.16991150442477876, 0.16991150442477876, 0.168141592920354, 0.168141592920354, 0.168141592920354, 0.16991150442477876, 0.17345132743362832, 0.18053097345132743, 0.17876106194690267, 0.17876106194690267, 0.18053097345132743, 0.18230088495575222, 0.18230088495575222, 0.1752212389380531, 0.18053097345132743, 0.184070796460177, 0.19646017699115045, 0.20530973451327433, 0.17168141592920355, 0.16991150442477876, 0.168141592920354, 0.1663716814159292, 0.1663716814159292, 0.17168141592920355, 0.19469026548672566, 0.17168141592920355, 0.18053097345132743, 0.1752212389380531, 0.18053097345132743, 0.18230088495575222, 0.18584070796460178, 0.18584070796460178, 0.1911504424778761, 0.18761061946902655, 0.18761061946902655, 0.18761061946902655, 0.1752212389380531, 0.168141592920354, 0.1592920353982301, 0.15752212389380532, 0.13274336283185842, 0.11504424778761062, 0.1168141592920354, 0.10973451327433628, 0.10973451327433628, 0.11150442477876106, 0.1079646017699115, 0.10619469026548672, 0.10619469026548672, 0.10442477876106195, 0.10442477876106195, 0.10265486725663717, 0.10265486725663717, 0.10265486725663717, 0.10265486725663717, 0.10442477876106195, 0.10619469026548672, 0.10265486725663717, 0.10442477876106195, 0.10442477876106195, 0.10619469026548672, 0.10265486725663717, 0.10265486725663717, 0.10442477876106195, 0.10442477876106195, 0.10265486725663717, 0.10265486725663717, 0.09911504424778761, 0.09911504424778761, 0.09911504424778761, 0.0831858407079646, 0.07610619469026549, 0.07610619469026549, 0.07256637168141593, 0.07079646017699115, 0.07079646017699115, 0.07256637168141593, 0.07079646017699115, 0.07079646017699115, 0.07079646017699115, 0.07079646017699115, 0.07079646017699115, 0.07256637168141593, 0.07256637168141593, 0.07256637168141593, 0.07079646017699115, 0.07256637168141593, 0.07964601769911504, 0.15221238938053097, 0.1433628318584071, 0.07256637168141593, 0.10619469026548672, 0.10088495575221239, 0.06548672566371681, 0.0584070796460177, 0.0584070796460177, 0.0584070796460177, 0.05486725663716814, 0.05309734513274336, 0.05309734513274336, 0.05309734513274336, 0.05309734513274336, 0.05486725663716814, 0.05486725663716814, 0.05486725663716814, 0.05486725663716814, 0.05486725663716814, 0.05486725663716814, 0.06017699115044248, 0.06371681415929203, 0.06371681415929203, 0.061946902654867256, 0.0584070796460177, 0.05486725663716814, 0.05309734513274336, 0.05309734513274336, 0.05309734513274336, 0.05309734513274336, 0.05309734513274336, 0.05486725663716814, 0.05486725663716814, 0.05486725663716814, 0.05309734513274336, 0.05309734513274336, 0.05486725663716814, 0.05486725663716814, 0.0584070796460177, 0.0584070796460177, 0.06371681415929203, 0.07079646017699115, 0.15221238938053097, 0.09380530973451327, 0.07610619469026549, 0.07079646017699115, 0.07079646017699115, 0.06902654867256637, 0.06725663716814159, 0.06902654867256637, 0.13805309734513274, 0.16460176991150444, 0.0920353982300885, 0.07787610619469026, 0.06371681415929203, 0.06017699115044248, 0.06371681415929203, 0.05663716814159292, 0.049557522123893805, 0.05132743362831858, 0.05132743362831858, 0.047787610619469026, 0.047787610619469026, 0.05309734513274336, 0.07079646017699115, 0.08495575221238938, 0.09026548672566372, 0.08141592920353982, 0.06548672566371681, 0.05132743362831858, 0.04601769911504425, 0.04601769911504425, 0.04601769911504425, 0.04601769911504425, 0.04601769911504425, 0.04601769911504425, 0.047787610619469026, 0.09380530973451327, 0.18584070796460178, 0.21415929203539824, 0.1663716814159292, 0.168141592920354, 0.2088495575221239, 0.25486725663716814, 0.23008849557522124, 0.1911504424778761, 0.168141592920354, 0.18584070796460178, 0.1929203539823009, 0.1929203539823009, 0.16460176991150444, 0.11858407079646018, 0.11858407079646018, 0.11327433628318584, 0.11150442477876106, 0.10442477876106195, 0.09911504424778761, 0.0920353982300885, 0.06725663716814159, 0.05486725663716814, 0.05309734513274336, 0.0831858407079646, 0.04601769911504425, 0.04070796460176991, 0.04070796460176991, 0.04070796460176991, 0.04247787610619469, 0.04070796460176991, 0.04070796460176991, 0.04070796460176991, 0.04070796460176991, 0.04070796460176991, 0.04070796460176991, 0.04070796460176991, 0.04070796460176991, 0.04070796460176991, 0.04070796460176991, 0.04070796460176991, 0.04070796460176991, 0.03893805309734513, 0.03893805309734513, 0.03893805309734513, 0.03893805309734513, 0.03893805309734513, 0.03893805309734513, 0.03893805309734513, 0.03893805309734513, 0.03893805309734513, 0.03893805309734513, 0.03893805309734513, 0.9221238938053097, 0.9221238938053097, 0.04247787610619469, 0.04601769911504425, 0.047787610619469026, 0.047787610619469026, 0.047787610619469026, 0.047787610619469026, 0.049557522123893805, 0.05132743362831858, 0.05132743362831858, 0.05132743362831858, 0.047787610619469026, 0.047787610619469026, 0.047787610619469026, 0.047787610619469026, 0.049557522123893805, 0.05132743362831858, 0.05132743362831858, 0.05132743362831858, 0.049557522123893805, 0.05132743362831858, 0.05309734513274336, 0.05486725663716814, 0.05486725663716814, 0.05486725663716814, 0.05486725663716814, 0.05663716814159292, 0.06548672566371681, 0.0743362831858407, 0.07964601769911504, 0.30796460176991153, 0.25663716814159293, 0.17168141592920355, 0.18230088495575222, 0.20176991150442478, 0.20707964601769913, 0.215929203539823, 0.2176991150442478, 0.17876106194690267, 0.17168141592920355, 0.1663716814159292, 0.17345132743362832, 0.16460176991150444, 0.168141592920354, 0.1663716814159292, 0.168141592920354, 0.17345132743362832, 0.18230088495575222, 0.18584070796460178, 0.18938053097345134, 0.19823008849557522, 0.2, 0.2, 0.20353982300884957, 0.20530973451327433, 0.20707964601769913, 0.20707964601769913, 0.20707964601769913, 0.20707964601769913, 0.21061946902654868, 0.22654867256637168, 0.22831858407079647, 0.2336283185840708, 0.23008849557522124, 0.24778761061946902, 0.2991150442477876, 0.30265486725663715, 0.31150442477876106, 0.5699115044247788, 0.44424778761061945, 0.3486725663716814, 0.32212389380530976, 0.2867256637168142, 0.23539823008849559, 0.2176991150442478, 0.2176991150442478, 0.21061946902654868, 0.21238938053097345, 0.22123893805309736, 0.21946902654867256, 0.215929203539823, 0.2176991150442478, 0.2176991150442478, 0.21946902654867256, 0.22123893805309736, 0.21946902654867256, 0.21946902654867256, 0.22300884955752212, 0.2247787610619469, 0.22831858407079647, 0.22654867256637168, 0.22123893805309736, 0.22123893805309736, 0.22300884955752212, 0.22300884955752212, 0.22300884955752212, 0.22300884955752212, 0.22300884955752212, 0.2247787610619469, 0.2247787610619469, 0.2247787610619469, 0.4, 0.3752212389380531, 0.3345132743362832, 0.8584070796460177, 0.9362831858407079, 0.9486725663716814, 0.8831858407079646, 0.8212389380530973, 0.31327433628318585, 0.30619469026548674, 0.2973451327433628, 0.22831858407079647, 0.22831858407079647, 0.23008849557522124, 0.22654867256637168, 0.22654867256637168, 0.22831858407079647, 0.22654867256637168, 0.23539823008849559, 0.24955752212389382, 0.24778761061946902, 0.23185840707964603, 0.22654867256637168, 0.22654867256637168, 0.22654867256637168, 0.22654867256637168, 0.22654867256637168, 0.22654867256637168, 0.22654867256637168, 0.22654867256637168, 0.22654867256637168, 0.22654867256637168, 0.22654867256637168, 0.22654867256637168, 0.22831858407079647, 0.23008849557522124, 0.2336283185840708, 0.2336283185840708, 0.23539823008849559, 0.24424778761061947], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/ShK.gap.json b/pfam_gap_rates/ShK.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..866949cddbbed3ca2a78f25a90dea3167d4bc8ab
--- /dev/null
+++ b/pfam_gap_rates/ShK.gap.json
@@ -0,0 +1 @@
+{"family": "ShK", "n_seqs": 3398, "length": 47, "gap_rates": [0.5435550323719835, 0.1927604473219541, 0.18658034137728075, 0.9487934078869924, 0.9246615656268393, 0.1618599175985874, 0.1718658034137728, 0.13743378457916422, 0.8705120659211301, 0.9217186580341378, 0.9278987639788111, 0.9052383755150089, 0.826074161271336, 0.11477339611536198, 0.10005885815185403, 0.09417304296645085, 0.0938787522071807, 0.10859329017068864, 0.10359034726309593, 0.08269570335491466, 0.07327839905826956, 0.06562683931724544, 0.39846968805179517, 0.9493819894055326, 0.39287816362566214, 0.047675103001765744, 0.06621542083578576, 0.08681577398469688, 0.10594467333725721, 0.1274278987639788, 0.8875809299587993, 0.4532077692760447, 0.4125956444967628, 0.07945850500294291, 0.059152442613301943, 0.03207769276044732, 0.028840494408475574, 0.023543260741612712, 0.01912889935256033, 0.017363154796939378, 0.01942319011183049, 0.01971748087110065, 0.02118893466745144, 0.023837551500882872, 0.05473808122424956, 0.10771041789287816, 0.12271924661565627], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Skp1.gap.json b/pfam_gap_rates/Skp1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c4ccf1ec0823421592145abe4b1ee5646c439e11
--- /dev/null
+++ b/pfam_gap_rates/Skp1.gap.json
@@ -0,0 +1 @@
+{"family": "Skp1", "n_seqs": 867, "length": 48, "gap_rates": [0.2779700115340254, 0.08304498269896193, 0.04152249134948097, 0.03344867358708189, 0.0265282583621684, 0.02422145328719723, 0.020761245674740483, 0.01730103806228374, 0.016147635524798153, 0.014994232987312572, 0.01384083044982699, 0.01384083044982699, 0.01384083044982699, 0.00922722029988466, 0.00922722029988466, 0.006920415224913495, 0.006920415224913495, 0.008073817762399077, 0.006920415224913495, 0.0011534025374855825, 0.0034602076124567475, 0.00461361014994233, 0.00461361014994233, 0.00461361014994233, 0.00461361014994233, 0.006920415224913495, 0.008073817762399077, 0.011534025374855825, 0.01384083044982699, 0.020761245674740483, 0.02768166089965398, 0.03460207612456748, 0.05190311418685121, 0.05074971164936563, 0.04498269896193772, 0.04844290657439446, 0.05190311418685121, 0.06228373702422145, 0.13494809688581316, 0.15340253748558247, 0.16493656286043828, 0.18223760092272204, 0.1903114186851211, 0.19607843137254902, 0.2122260668973472, 0.24106113033448673, 0.2664359861591695, 0.3344867358708189], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/SlyX.gap.json b/pfam_gap_rates/SlyX.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..5a6e83526ed951232089ea095a527866190b7db5
--- /dev/null
+++ b/pfam_gap_rates/SlyX.gap.json
@@ -0,0 +1 @@
+{"family": "SlyX", "n_seqs": 387, "length": 69, "gap_rates": [0.6511627906976745, 0.2661498708010336, 0.12144702842377261, 0.09302325581395349, 0.07235142118863049, 0.03617571059431524, 0.023255813953488372, 0.020671834625323, 0.015503875968992248, 0.0103359173126615, 0.007751937984496124, 0.007751937984496124, 0.007751937984496124, 0.007751937984496124, 0.007751937984496124, 0.00516795865633075, 0.00516795865633075, 0.00516795865633075, 0.00516795865633075, 0.00516795865633075, 0.00516795865633075, 0.00516795865633075, 0.00516795865633075, 0.00516795865633075, 0.002583979328165375, 0.002583979328165375, 0.002583979328165375, 0.00516795865633075, 0.00516795865633075, 0.00516795865633075, 0.00516795865633075, 0.00516795865633075, 0.002583979328165375, 0.002583979328165375, 0.002583979328165375, 0.002583979328165375, 0.00516795865633075, 0.00516795865633075, 0.002583979328165375, 0.002583979328165375, 0.002583979328165375, 0.002583979328165375, 0.002583979328165375, 0.002583979328165375, 0.00516795865633075, 0.00516795865633075, 0.00516795865633075, 0.01808785529715762, 0.0103359173126615, 0.012919896640826873, 0.007751937984496124, 0.0103359173126615, 0.0103359173126615, 0.025839793281653745, 0.03617571059431524, 0.1111111111111111, 0.09560723514211886, 0.07235142118863049, 0.19121447028423771, 0.896640826873385, 0.710594315245478, 0.01808785529715762, 0.020671834625323, 0.020671834625323, 0.020671834625323, 0.020671834625323, 0.023255813953488372, 0.023255813953488372, 0.025839793281653745], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Sm_multidrug_ex.gap.json b/pfam_gap_rates/Sm_multidrug_ex.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b368107e22624fdfc12c1ff334b95d35510b4c88
--- /dev/null
+++ b/pfam_gap_rates/Sm_multidrug_ex.gap.json
@@ -0,0 +1 @@
+{"family": "Sm_multidrug_ex", "n_seqs": 463, "length": 130, "gap_rates": [0.15550755939524838, 0.1447084233261339, 0.14038876889848811, 0.11447084233261338, 0.07991360691144708, 0.06047516198704104, 0.05399568034557235, 0.05183585313174946, 0.05183585313174946, 0.04967602591792657, 0.8077753779697624, 0.04967602591792657, 0.04535637149028078, 0.04103671706263499, 0.0367170626349892, 0.04319654427645788, 0.038876889848812095, 0.0367170626349892, 0.0367170626349892, 0.0367170626349892, 0.0367170626349892, 0.03023758099352052, 0.03023758099352052, 0.03023758099352052, 0.03023758099352052, 0.03023758099352052, 0.03023758099352052, 0.03023758099352052, 0.02159827213822894, 0.02159827213822894, 0.02159827213822894, 0.02159827213822894, 0.02159827213822894, 0.02159827213822894, 0.019438444924406047, 0.019438444924406047, 0.019438444924406047, 0.02159827213822894, 0.02591792656587473, 0.02159827213822894, 0.019438444924406047, 0.02591792656587473, 0.023758099352051837, 0.023758099352051837, 0.8444924406047516, 0.10151187904967603, 0.12958963282937366, 0.11663066954643629, 0.11447084233261338, 0.1101511879049676, 0.13606911447084233, 0.12742980561555076, 0.9092872570194385, 0.09071274298056156, 0.058315334773218146, 0.038876889848812095, 0.02159827213822894, 0.03023758099352052, 0.023758099352051837, 0.02159827213822894, 0.017278617710583154, 0.017278617710583154, 0.012958963282937365, 0.01079913606911447, 0.008639308855291577, 0.01079913606911447, 0.019438444924406047, 0.8423326133909287, 0.028077753779697623, 0.023758099352051837, 0.012958963282937365, 0.012958963282937365, 0.008639308855291577, 0.8056155507559395, 0.8293736501079914, 0.816414686825054, 0.6954643628509719, 0.01079913606911447, 0.9352051835853131, 0.004319654427645789, 0.004319654427645789, 0.004319654427645789, 0.004319654427645789, 0.004319654427645789, 0.004319654427645789, 0.004319654427645789, 0.0, 0.0021598272138228943, 0.004319654427645789, 0.004319654427645789, 0.008639308855291577, 0.008639308855291577, 0.1511879049676026, 0.1468682505399568, 0.13822894168466524, 0.017278617710583154, 0.0021598272138228943, 0.0021598272138228943, 0.0021598272138228943, 0.0021598272138228943, 0.0021598272138228943, 0.0021598272138228943, 0.0021598272138228943, 0.0021598272138228943, 0.0021598272138228943, 0.004319654427645789, 0.0021598272138228943, 0.0021598272138228943, 0.0021598272138228943, 0.0021598272138228943, 0.004319654427645789, 0.0021598272138228943, 0.0021598272138228943, 0.0021598272138228943, 0.0021598272138228943, 0.004319654427645789, 0.004319654427645789, 0.0064794816414686825, 0.0064794816414686825, 0.004319654427645789, 0.004319654427645789, 0.004319654427645789, 0.004319654427645789, 0.004319654427645789, 0.004319654427645789, 0.004319654427645789, 0.004319654427645789, 0.019438444924406047, 0.09503239740820735, 0.3282937365010799], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/SnoaL_4.gap.json b/pfam_gap_rates/SnoaL_4.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b1afb6207312b3cad0f757bc05b105b0e20beaca
--- /dev/null
+++ b/pfam_gap_rates/SnoaL_4.gap.json
@@ -0,0 +1 @@
+{"family": "SnoaL_4", "n_seqs": 1257, "length": 157, "gap_rates": [0.8464598249801114, 0.5576770087509945, 0.411296738265712, 0.2951471758154336, 0.2100238663484487, 0.1583134447096261, 0.11376292760540971, 0.08591885441527446, 0.06682577565632458, 0.057279236276849645, 0.049323786793953855, 0.0477326968973747, 0.04455051710421639, 0.03659506762132061, 0.03420843277645187, 0.03420843277645187, 0.035003977724741446, 0.03341288782816229, 0.03420843277645187, 0.03261734287987271, 0.031026252983293555, 0.02784407319013524, 0.9466984884645983, 0.02784407319013524, 0.031026252983293555, 0.027048528241845664, 0.027048528241845664, 0.02545743834526651, 0.02386634844868735, 0.022275258552108195, 0.022275258552108195, 0.021479713603818614, 0.020684168655529037, 0.022275258552108195, 0.021479713603818614, 0.9291964996022275, 0.01988862370723946, 0.02386634844868735, 0.020684168655529037, 0.02784407319013524, 0.026252983293556086, 0.02386634844868735, 0.024661893396976928, 0.13046937151949084, 0.26650755767700873, 0.6531424025457438, 0.7836117740652346, 0.8798727128082736, 0.9299920445505171, 0.9085123309466985, 0.8400954653937948, 0.7287191726332538, 0.47653142402545745, 0.1877486077963405, 0.11376292760540971, 0.07398568019093078, 0.07637231503579953, 0.028639618138424822, 0.92442322991249, 0.023070803500397773, 0.020684168655529037, 0.022275258552108195, 0.015910898965791568, 0.015115354017501989, 0.012728719172633254, 0.017501988862370723, 0.015115354017501989, 0.014319809069212411, 0.013524264120922832, 0.01909307875894988, 0.11933174224343675, 0.11853619729514718, 0.050119331742243436, 0.046141607000795545, 0.0294351630867144, 0.7549721559268099, 0.8456642800318218, 0.9315831344470963, 0.8997613365155132, 0.7915672235481305, 0.6865552903739062, 0.024661893396976928, 0.02386634844868735, 0.020684168655529037, 0.021479713603818614, 0.021479713603818614, 0.02386634844868735, 0.022275258552108195, 0.021479713603818614, 0.022275258552108195, 0.021479713603818614, 0.020684168655529037, 0.020684168655529037, 0.020684168655529037, 0.843277645186953, 0.6682577565632458, 0.021479713603818614, 0.020684168655529037, 0.8687350835322196, 0.023070803500397773, 0.9069212410501193, 0.023070803500397773, 0.023070803500397773, 0.022275258552108195, 0.027048528241845664, 0.02545743834526651, 0.026252983293556086, 0.026252983293556086, 0.026252983293556086, 0.0294351630867144, 0.028639618138424822, 0.028639618138424822, 0.14876690533015116, 0.1758154335719968, 0.08989657915672236, 0.07398568019093078, 0.11137629276054097, 0.8743038981702467, 0.9069212410501193, 0.9323786793953859, 0.9379474940334129, 0.9236276849642004, 0.8933969769291965, 0.7844073190135242, 0.14478918058870327, 0.12171837708830549, 0.9403341288782816, 0.8496420047732697, 0.16308671439936356, 0.17024661893396978, 0.10819411296738266, 0.08671439936356404, 0.06205250596658711, 0.8894192521877486, 0.057279236276849645, 0.05091487669053302, 0.05171042163882259, 0.05171042163882259, 0.05171042163882259, 0.05250596658711217, 0.053301511535401754, 0.05250596658711217, 0.05250596658711217, 0.05409705648369133, 0.056483691328560064, 0.05568814638027048, 0.8933969769291965, 0.057279236276849645, 0.059665871121718374, 0.06205250596658711, 0.06921241050119331, 0.07875894988066826, 0.09069212410501193, 0.10342084327764518, 0.1575178997613365, 0.284805091487669, 0.7398568019093079], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Sod_Fe_C.gap.json b/pfam_gap_rates/Sod_Fe_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ebdc92b36f88b2250825ac05622b289346812f25
--- /dev/null
+++ b/pfam_gap_rates/Sod_Fe_C.gap.json
@@ -0,0 +1 @@
+{"family": "Sod_Fe_C", "n_seqs": 2906, "length": 109, "gap_rates": [0.37026841018582246, 0.32312456985547144, 0.19064005505849965, 0.09325533379215416, 0.06572608396421198, 0.05918788713007571, 0.055746730901582935, 0.05299380591878871, 0.05196145905024088, 0.051617343427391604, 0.05024088093599449, 0.049896765313145214, 0.049896765313145214, 0.048864418444597386, 0.047143840330350996, 0.04542326221610461, 0.0440467997247075, 0.04301445285615967, 0.042326221610461116, 0.04163799036476256, 0.03922918100481762, 0.0395732966276669, 0.03888506538196834, 0.038196834136269786, 0.03750860289057123, 0.03750860289057123, 0.03785271851342051, 0.03682037164487268, 0.038540949759119064, 0.0956641431520991, 0.06159669649002065, 0.034067446662078456, 0.034067446662078456, 0.034411562284927734, 0.03475567790777701, 0.03475567790777701, 0.03509979353062629, 0.03509979353062629, 0.035788024776324846, 0.035788024776324846, 0.03509979353062629, 0.03785271851342051, 0.049208534067446665, 0.6180316586373021, 0.22229869236063318, 0.038540949759119064, 0.038540949759119064, 0.03991741225051618, 0.03922918100481762, 0.0395732966276669, 0.03888506538196834, 0.0395732966276669, 0.0395732966276669, 0.038196834136269786, 0.040605643496214726, 0.04163799036476256, 0.07501720578114246, 0.07088781830695114, 0.04679972470750172, 0.05058499655884377, 0.08671713695801789, 0.07570543702684102, 0.04611149346180317, 0.038540949759119064, 0.8513420509291122, 0.8905712319339298, 0.9480385409497591, 0.8836889194769443, 0.7931865106675843, 0.038540949759119064, 0.03888506538196834, 0.038540949759119064, 0.03888506538196834, 0.03888506538196834, 0.03888506538196834, 0.038540949759119064, 0.038540949759119064, 0.038540949759119064, 0.040949759119064004, 0.04198210598761184, 0.04198210598761184, 0.042670337233310394, 0.042670337233310394, 0.04198210598761184, 0.042670337233310394, 0.042670337233310394, 0.043358568479008944, 0.042670337233310394, 0.042670337233310394, 0.042670337233310394, 0.042670337233310394, 0.043358568479008944, 0.043358568479008944, 0.043358568479008944, 0.045079146593255334, 0.04576737783895389, 0.04645560908465245, 0.04817618719889883, 0.8444597384721266, 0.048864418444597386, 0.049896765313145214, 0.054026152787336544, 0.05505849965588438, 0.056090846524432206, 0.05884377150722643, 0.060220233998623536, 0.08293186510667584, 0.16139022711631107, 0.5010323468685478], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Sod_Ni.gap.json b/pfam_gap_rates/Sod_Ni.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..971875635834b5d71e09adbac5d735b2c30c6b0d
--- /dev/null
+++ b/pfam_gap_rates/Sod_Ni.gap.json
@@ -0,0 +1 @@
+{"family": "Sod_Ni", "n_seqs": 168, "length": 150, "gap_rates": [0.2976190476190476, 0.10714285714285714, 0.08928571428571429, 0.05952380952380952, 0.023809523809523808, 0.023809523809523808, 0.023809523809523808, 0.023809523809523808, 0.023809523809523808, 0.023809523809523808, 0.023809523809523808, 0.017857142857142856, 0.017857142857142856, 0.017857142857142856, 0.011904761904761904, 0.20238095238095238, 0.017857142857142856, 0.011904761904761904, 0.011904761904761904, 0.011904761904761904, 0.011904761904761904, 0.005952380952380952, 0.005952380952380952, 0.7976190476190477, 0.8154761904761905, 0.8214285714285714, 0.8154761904761905, 0.7976190476190477, 0.005952380952380952, 0.005952380952380952, 0.005952380952380952, 0.005952380952380952, 0.005952380952380952, 0.005952380952380952, 0.005952380952380952, 0.005952380952380952, 0.005952380952380952, 0.005952380952380952, 0.005952380952380952, 0.005952380952380952, 0.005952380952380952, 0.005952380952380952, 0.005952380952380952, 0.15476190476190477, 0.06547619047619048, 0.05952380952380952, 0.7797619047619048, 0.8154761904761905, 0.9464285714285714, 0.8452380952380952, 0.8035714285714286, 0.6904761904761905, 0.5, 0.48214285714285715, 0.47619047619047616, 0.47619047619047616, 0.47023809523809523, 0.44047619047619047, 0.44047619047619047, 0.0, 0.0, 0.0, 0.005952380952380952, 0.005952380952380952, 0.005952380952380952, 0.005952380952380952, 0.005952380952380952, 0.005952380952380952, 0.005952380952380952, 0.005952380952380952, 0.005952380952380952, 0.005952380952380952, 0.005952380952380952, 0.005952380952380952, 0.005952380952380952, 0.005952380952380952, 0.005952380952380952, 0.21428571428571427, 0.21428571428571427, 0.21428571428571427, 0.21428571428571427, 0.005952380952380952, 0.005952380952380952, 0.005952380952380952, 0.005952380952380952, 0.005952380952380952, 0.005952380952380952, 0.005952380952380952, 0.005952380952380952, 0.005952380952380952, 0.7916666666666666, 0.7916666666666666, 0.8690476190476191, 0.875, 0.9345238095238095, 0.9464285714285714, 0.9285714285714286, 0.8690476190476191, 0.8690476190476191, 0.7916666666666666, 0.7916666666666666, 0.005952380952380952, 0.023809523809523808, 0.023809523809523808, 0.005952380952380952, 0.005952380952380952, 0.005952380952380952, 0.005952380952380952, 0.005952380952380952, 0.005952380952380952, 0.005952380952380952, 0.005952380952380952, 0.005952380952380952, 0.005952380952380952, 0.011904761904761904, 0.011904761904761904, 0.011904761904761904, 0.011904761904761904, 0.011904761904761904, 0.011904761904761904, 0.011904761904761904, 0.7321428571428571, 0.7321428571428571, 0.011904761904761904, 0.011904761904761904, 0.011904761904761904, 0.011904761904761904, 0.011904761904761904, 0.011904761904761904, 0.011904761904761904, 0.011904761904761904, 0.011904761904761904, 0.011904761904761904, 0.011904761904761904, 0.011904761904761904, 0.011904761904761904, 0.011904761904761904, 0.011904761904761904, 0.011904761904761904, 0.011904761904761904, 0.011904761904761904, 0.011904761904761904, 0.011904761904761904, 0.011904761904761904, 0.011904761904761904, 0.017857142857142856, 0.05952380952380952, 0.15476190476190477, 0.2261904761904762, 0.25], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Somatomedin_B.gap.json b/pfam_gap_rates/Somatomedin_B.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..3395c507b74762e7eceb230ddb18c75f1435ceba
--- /dev/null
+++ b/pfam_gap_rates/Somatomedin_B.gap.json
@@ -0,0 +1 @@
+{"family": "Somatomedin_B", "n_seqs": 406, "length": 52, "gap_rates": [0.6206896551724138, 0.14532019704433496, 0.11083743842364532, 0.11083743842364532, 0.8669950738916257, 0.10591133004926108, 0.0960591133004926, 0.9187192118226601, 0.9261083743842364, 0.8990147783251231, 0.09359605911330049, 0.16748768472906403, 0.1330049261083744, 0.14039408866995073, 0.11083743842364532, 0.2733990147783251, 0.16995073891625614, 0.13793103448275862, 0.054187192118226604, 0.046798029556650245, 0.4408866995073892, 0.8423645320197044, 0.8793103448275862, 0.896551724137931, 0.9187192118226601, 0.9088669950738916, 0.8891625615763546, 0.8472906403940886, 0.8349753694581281, 0.0, 0.0, 0.0, 0.0, 0.0024630541871921183, 0.0, 0.0, 0.0, 0.0024630541871921183, 0.0024630541871921183, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0024630541871921183, 0.007389162561576354, 0.007389162561576354, 0.009852216748768473, 0.06403940886699508, 0.3817733990147783], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Sortilin-Vps10.gap.json b/pfam_gap_rates/Sortilin-Vps10.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..9a8208f3948d0cb49b1e7b92948cedbce308e7d7
--- /dev/null
+++ b/pfam_gap_rates/Sortilin-Vps10.gap.json
@@ -0,0 +1 @@
+{"family": "Sortilin-Vps10", "n_seqs": 1120, "length": 518, "gap_rates": [0.6357142857142857, 0.2294642857142857, 0.20267857142857143, 0.19732142857142856, 0.19375, 0.19375, 0.19107142857142856, 0.18660714285714286, 0.18660714285714286, 0.18571428571428572, 0.18571428571428572, 0.18571428571428572, 0.18482142857142858, 0.18482142857142858, 0.18482142857142858, 0.19107142857142856, 0.44107142857142856, 0.3982142857142857, 0.2580357142857143, 0.19196428571428573, 0.20535714285714285, 0.20089285714285715, 0.20892857142857144, 0.1982142857142857, 0.2794642857142857, 0.8214285714285714, 0.8705357142857143, 0.9169642857142857, 0.9482142857142857, 0.9276785714285715, 0.8991071428571429, 0.8375, 0.7741071428571429, 0.2330357142857143, 0.18035714285714285, 0.1767857142857143, 0.17232142857142857, 0.1732142857142857, 0.1732142857142857, 0.17232142857142857, 0.16964285714285715, 0.17589285714285716, 0.16785714285714284, 0.17142857142857143, 0.16517857142857142, 0.16339285714285715, 0.1625, 0.18571428571428572, 0.16607142857142856, 0.18571428571428572, 0.6392857142857142, 0.6732142857142858, 0.6964285714285714, 0.7410714285714286, 0.9410714285714286, 0.9383928571428571, 0.7205357142857143, 0.6821428571428572, 0.6491071428571429, 0.5785714285714286, 0.17857142857142858, 0.15625, 0.15535714285714286, 0.15535714285714286, 0.15446428571428572, 0.15446428571428572, 0.15267857142857144, 0.15267857142857144, 0.15178571428571427, 0.15357142857142858, 0.15357142857142858, 0.15089285714285713, 0.15089285714285713, 0.15089285714285713, 0.15, 0.15, 0.14910714285714285, 0.15357142857142858, 0.15089285714285713, 0.14821428571428572, 0.14910714285714285, 0.14910714285714285, 0.15, 0.15625, 0.6464285714285715, 0.9133928571428571, 0.7875, 0.4080357142857143, 0.3357142857142857, 0.2892857142857143, 0.15714285714285714, 0.14732142857142858, 0.14642857142857144, 0.1455357142857143, 0.14642857142857144, 0.1455357142857143, 0.14732142857142858, 0.15535714285714286, 0.15, 0.14642857142857144, 0.14821428571428572, 0.14732142857142858, 0.15089285714285713, 0.15089285714285713, 0.15625, 0.3794642857142857, 0.40089285714285716, 0.39285714285714285, 0.5875, 0.6517857142857143, 0.7491071428571429, 0.78125, 0.7276785714285714, 0.6107142857142858, 0.4982142857142857, 0.3794642857142857, 0.35535714285714287, 0.3482142857142857, 0.32767857142857143, 0.24642857142857144, 0.19910714285714284, 0.19285714285714287, 0.19375, 0.17410714285714285, 0.17410714285714285, 0.175, 0.17589285714285716, 0.175, 0.175, 0.17410714285714285, 0.1767857142857143, 0.175, 0.175, 0.175, 0.9178571428571428, 0.17589285714285716, 0.1767857142857143, 0.18214285714285713, 0.2017857142857143, 0.2357142857142857, 0.2830357142857143, 0.35625, 0.42232142857142857, 0.44642857142857145, 0.45982142857142855, 0.46875, 0.475, 0.4785714285714286, 0.49107142857142855, 0.5125, 0.5598214285714286, 0.5598214285714286, 0.6866071428571429, 0.8142857142857143, 0.90625, 0.9294642857142857, 0.9214285714285714, 0.8553571428571428, 0.7589285714285714, 0.6651785714285714, 0.5651785714285714, 0.55, 0.5428571428571428, 0.5151785714285714, 0.5133928571428571, 0.5125, 0.51875, 0.5205357142857143, 0.5205357142857143, 0.5241071428571429, 0.5276785714285714, 0.5321428571428571, 0.5383928571428571, 0.5482142857142858, 0.5571428571428572, 0.5910714285714286, 0.7803571428571429, 0.7428571428571429, 0.6598214285714286, 0.9214285714285714, 0.9428571428571428, 0.925, 0.9178571428571428, 0.6098214285714286, 0.5848214285714286, 0.55625, 0.5508928571428572, 0.5464285714285714, 0.5455357142857142, 0.5455357142857142, 0.5446428571428571, 0.5446428571428571, 0.5446428571428571, 0.5455357142857142, 0.5455357142857142, 0.54375, 0.54375, 0.54375, 0.5446428571428571, 0.5464285714285714, 0.5482142857142858, 0.5535714285714286, 0.5517857142857143, 0.5526785714285715, 0.7392857142857143, 0.8321428571428572, 0.8616071428571429, 0.8875, 0.94375, 0.9107142857142857, 0.8705357142857143, 0.8580357142857142, 0.8285714285714286, 0.5482142857142858, 0.5482142857142858, 0.5491071428571429, 0.5491071428571429, 0.5482142857142858, 0.5473214285714286, 0.5464285714285714, 0.5464285714285714, 0.5464285714285714, 0.5473214285714286, 0.5455357142857142, 0.5446428571428571, 0.5455357142857142, 0.5455357142857142, 0.5464285714285714, 0.5464285714285714, 0.5473214285714286, 0.5482142857142858, 0.5491071428571429, 0.9071428571428571, 0.9491071428571428, 0.9196428571428571, 0.8526785714285714, 0.5482142857142858, 0.5526785714285715, 0.5830357142857143, 0.6223214285714286, 0.5928571428571429, 0.5482142857142858, 0.5419642857142857, 0.5419642857142857, 0.5419642857142857, 0.5428571428571428, 0.54375, 0.54375, 0.5455357142857142, 0.9196428571428571, 0.54375, 0.5455357142857142, 0.54375, 0.5428571428571428, 0.5455357142857142, 0.5464285714285714, 0.5455357142857142, 0.5455357142857142, 0.5446428571428571, 0.5446428571428571, 0.7830357142857143, 0.9455357142857143, 0.8678571428571429, 0.7464285714285714, 0.5446428571428571, 0.5473214285714286, 0.5446428571428571, 0.5428571428571428, 0.54375, 0.54375, 0.5428571428571428, 0.5410714285714285, 0.5401785714285714, 0.5401785714285714, 0.5410714285714285, 0.5401785714285714, 0.5392857142857143, 0.5383928571428571, 0.5428571428571428, 0.5392857142857143, 0.5392857142857143, 0.5375, 0.5375, 0.5383928571428571, 0.5392857142857143, 0.5392857142857143, 0.5375, 0.5375, 0.5375, 0.5383928571428571, 0.9383928571428571, 0.5955357142857143, 0.5928571428571429, 0.8803571428571428, 0.8178571428571428, 0.54375, 0.9428571428571428, 0.5383928571428571, 0.5375, 0.5366071428571428, 0.5366071428571428, 0.5375, 0.5375, 0.5375, 0.5383928571428571, 0.5383928571428571, 0.5375, 0.5375, 0.5401785714285714, 0.5357142857142857, 0.5339285714285714, 0.5330357142857143, 0.5357142857142857, 0.5383928571428571, 0.5339285714285714, 0.5339285714285714, 0.5348214285714286, 0.9491071428571428, 0.5330357142857143, 0.5330357142857143, 0.54375, 0.5517857142857143, 0.5473214285714286, 0.5410714285714285, 0.5401785714285714, 0.5428571428571428, 0.5401785714285714, 0.5348214285714286, 0.5321428571428571, 0.5321428571428571, 0.5321428571428571, 0.5303571428571429, 0.5321428571428571, 0.5285714285714286, 0.5241071428571429, 0.5232142857142857, 0.5232142857142857, 0.5232142857142857, 0.5232142857142857, 0.5223214285714286, 0.5214285714285715, 0.5205357142857143, 0.5196428571428572, 0.5241071428571429, 0.5258928571428572, 0.5678571428571428, 0.6696428571428571, 0.6705357142857142, 0.6732142857142858, 0.70625, 0.8946428571428572, 0.95, 0.81875, 0.6866071428571429, 0.65625, 0.6428571428571429, 0.6375, 0.5428571428571428, 0.5348214285714286, 0.5178571428571429, 0.5142857142857142, 0.5133928571428571, 0.5133928571428571, 0.5125, 0.5125, 0.5133928571428571, 0.5116071428571428, 0.5116071428571428, 0.5116071428571428, 0.5125, 0.5116071428571428, 0.5116071428571428, 0.5125, 0.5125, 0.5116071428571428, 0.5098214285714285, 0.5089285714285714, 0.5089285714285714, 0.5071428571428571, 0.50625, 0.5392857142857143, 0.6017857142857143, 0.8883928571428571, 0.9017857142857143, 0.8919642857142858, 0.8803571428571428, 0.64375, 0.6392857142857142, 0.6330357142857143, 0.9419642857142857, 0.8178571428571428, 0.6116071428571429, 0.5875, 0.5785714285714286, 0.5767857142857142, 0.5732142857142857, 0.5732142857142857, 0.5705357142857143, 0.5651785714285714, 0.5383928571428571, 0.5178571428571429, 0.5098214285714285, 0.5107142857142857, 0.5107142857142857, 0.5098214285714285, 0.5089285714285714, 0.5116071428571428, 0.5160714285714286, 0.5178571428571429, 0.83125, 0.8366071428571429, 0.825, 0.5580357142857143, 0.5321428571428571, 0.5241071428571429, 0.6571428571428571, 0.6714285714285714, 0.5455357142857142, 0.6428571428571429, 0.5116071428571428, 0.5125, 0.5116071428571428, 0.5133928571428571, 0.5133928571428571, 0.6508928571428572, 0.525, 0.5232142857142857, 0.5116071428571428, 0.5098214285714285, 0.50625, 0.5017857142857143, 0.5026785714285714, 0.5, 0.49910714285714286, 0.4973214285714286, 0.5, 0.5026785714285714, 0.5026785714285714, 0.5, 0.5026785714285714, 0.5026785714285714, 0.5026785714285714, 0.5642857142857143, 0.9169642857142857, 0.6625, 0.5107142857142857, 0.5053571428571428, 0.5, 0.49910714285714286, 0.4982142857142857, 0.4982142857142857, 0.4982142857142857, 0.4982142857142857, 0.49910714285714286, 0.49910714285714286, 0.49910714285714286, 0.49910714285714286, 0.5, 0.5017857142857143, 0.5017857142857143, 0.5017857142857143, 0.5026785714285714, 0.5026785714285714, 0.5044642857142857, 0.5044642857142857, 0.5044642857142857, 0.5044642857142857, 0.5035714285714286, 0.5026785714285714, 0.5044642857142857, 0.5044642857142857, 0.5053571428571428, 0.5053571428571428, 0.5044642857142857, 0.5053571428571428, 0.5053571428571428, 0.5053571428571428, 0.5044642857142857, 0.5044642857142857, 0.50625, 0.50625, 0.5044642857142857, 0.5044642857142857, 0.9357142857142857, 0.9169642857142857, 0.50625, 0.5535714285714286, 0.8142857142857143, 0.5330357142857143, 0.5196428571428572, 0.5116071428571428, 0.5080357142857143, 0.5080357142857143, 0.5071428571428571, 0.5098214285714285, 0.5107142857142857, 0.5107142857142857, 0.5116071428571428, 0.5133928571428571, 0.5151785714285714, 0.5142857142857142, 0.5151785714285714, 0.5160714285714286, 0.5196428571428572, 0.5241071428571429, 0.5276785714285714, 0.5321428571428571, 0.5339285714285714, 0.5357142857142857, 0.6616071428571428, 0.5616071428571429, 0.5785714285714286, 0.5848214285714286, 0.6, 0.6089285714285714, 0.64375, 0.7071428571428572, 0.7892857142857143], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Sortilin_C.gap.json b/pfam_gap_rates/Sortilin_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..49c112492f4d82db027fc63b1f86963bd1a60586
--- /dev/null
+++ b/pfam_gap_rates/Sortilin_C.gap.json
@@ -0,0 +1 @@
+{"family": "Sortilin_C", "n_seqs": 639, "length": 194, "gap_rates": [0.486697965571205, 0.29577464788732394, 0.2597809076682316, 0.23630672926447574, 0.2081377151799687, 0.19405320813771518, 0.18309859154929578, 0.17370892018779344, 0.1674491392801252, 0.162754303599374, 0.15492957746478872, 0.15179968701095461, 0.14710485133020346, 0.14397496087636932, 0.14084507042253522, 0.13928012519561817, 0.13928012519561817, 0.13771517996870108, 0.14397496087636932, 0.6025039123630673, 0.8826291079812206, 0.9374021909233177, 0.9061032863849765, 0.8497652582159625, 0.4757433489827856, 0.41158059467918623, 0.25508607198748046, 0.10954616588419405, 0.10485133020344288, 0.12050078247261346, 0.15805946791862285, 0.09702660406885759, 0.09702660406885759, 0.09389671361502347, 0.08607198748043818, 0.08607198748043818, 0.08607198748043818, 0.0594679186228482, 0.050078247261345854, 0.053208137715179966, 0.9405320813771518, 0.04538341158059468, 0.0406885758998435, 0.0406885758998435, 0.04381846635367762, 0.6134585289514867, 0.6588419405320813, 0.6651017214397497, 0.6885758998435054, 0.8857589984350548, 0.676056338028169, 0.6619718309859155, 0.6572769953051644, 0.0406885758998435, 0.04381846635367762, 0.03286384976525822, 0.03129890453834116, 0.03442879499217527, 0.03286384976525822, 0.03286384976525822, 0.03286384976525822, 0.03286384976525822, 0.03286384976525822, 0.04538341158059468, 0.9154929577464789, 0.945226917057903, 0.8951486697965572, 0.37089201877934275, 0.38967136150234744, 0.20970266040688576, 0.7762128325508607, 0.06572769953051644, 0.04538341158059468, 0.04381846635367762, 0.03599374021909233, 0.03286384976525822, 0.03286384976525822, 0.0297339593114241, 0.026604068857589983, 0.028169014084507043, 0.028169014084507043, 0.0297339593114241, 0.0297339593114241, 0.0297339593114241, 0.0297339593114241, 0.03129890453834116, 0.03129890453834116, 0.04381846635367762, 0.0297339593114241, 0.03129890453834116, 0.0297339593114241, 0.026604068857589983, 0.028169014084507043, 0.028169014084507043, 0.028169014084507043, 0.03442879499217527, 0.051643192488262914, 0.09859154929577464, 0.03129890453834116, 0.03286384976525822, 0.8888888888888888, 0.03912363067292645, 0.0297339593114241, 0.0406885758998435, 0.6588419405320813, 0.09076682316118936, 0.025039123630672927, 0.025039123630672927, 0.025039123630672927, 0.0297339593114241, 0.028169014084507043, 0.028169014084507043, 0.025039123630672927, 0.025039123630672927, 0.028169014084507043, 0.028169014084507043, 0.06103286384976526, 0.09076682316118936, 0.09389671361502347, 0.09233176838810642, 0.09233176838810642, 0.09233176838810642, 0.09546165884194054, 0.09546165884194054, 0.10015649452269171, 0.1298904538341158, 0.1643192488262911, 0.9107981220657277, 0.9499217527386542, 0.892018779342723, 0.6181533646322379, 0.23943661971830985, 0.09233176838810642, 0.09233176838810642, 0.1189358372456964, 0.11737089201877934, 0.10954616588419405, 0.107981220657277, 0.107981220657277, 0.10172143974960876, 0.10015649452269171, 0.107981220657277, 0.107981220657277, 0.11424100156494522, 0.4647887323943662, 0.5633802816901409, 0.6181533646322379, 0.5023474178403756, 0.945226917057903, 0.3755868544600939, 0.3129890453834116, 0.10485133020344288, 0.24256651017214398, 0.40375586854460094, 0.7636932707355243, 0.5868544600938967, 0.4209702660406886, 0.41158059467918623, 0.18622848200312989, 0.2237871674491393, 0.9436619718309859, 0.4569640062597809, 0.2081377151799687, 0.16118935837245696, 0.24413145539906103, 0.1564945226917058, 0.15492957746478872, 0.15492957746478872, 0.15492957746478872, 0.1596244131455399, 0.1596244131455399, 0.1564945226917058, 0.1596244131455399, 0.16118935837245696, 0.162754303599374, 0.162754303599374, 0.162754303599374, 0.1674491392801252, 0.17370892018779344, 0.17996870109546165, 0.9123630672926447, 0.5164319248826291, 0.40219092331768386, 0.3145539906103286, 0.3568075117370892, 0.325508607198748, 0.28012519561815336, 0.3427230046948357, 0.3208137715179969, 0.29107981220657275, 0.2942097026604069, 0.30359937402190923, 0.3082942097026604, 0.325508607198748], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/SoxG.gap.json b/pfam_gap_rates/SoxG.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ad474045e13a4a8e7d66eb34cf5bcbc4965831be
--- /dev/null
+++ b/pfam_gap_rates/SoxG.gap.json
@@ -0,0 +1 @@
+{"family": "SoxG", "n_seqs": 292, "length": 158, "gap_rates": [0.8561643835616438, 0.7945205479452054, 0.7636986301369864, 0.7328767123287672, 0.6917808219178082, 0.6746575342465754, 0.6301369863013698, 0.5068493150684932, 0.4349315068493151, 0.386986301369863, 0.2979452054794521, 0.2465753424657534, 0.2328767123287671, 0.21232876712328766, 0.18835616438356165, 0.17123287671232876, 0.1678082191780822, 0.1541095890410959, 0.14383561643835616, 0.1506849315068493, 0.136986301369863, 0.11643835616438356, 0.11301369863013698, 0.11301369863013698, 0.10616438356164383, 0.09931506849315068, 0.0821917808219178, 0.07876712328767123, 0.0821917808219178, 0.07534246575342465, 0.06506849315068493, 0.06164383561643835, 0.5856164383561644, 0.9315068493150684, 0.11986301369863013, 0.06506849315068493, 0.04794520547945205, 0.04794520547945205, 0.04794520547945205, 0.0410958904109589, 0.0410958904109589, 0.0410958904109589, 0.0410958904109589, 0.0410958904109589, 0.0410958904109589, 0.0410958904109589, 0.0410958904109589, 0.0410958904109589, 0.0410958904109589, 0.5102739726027398, 0.9417808219178082, 0.3972602739726027, 0.1917808219178082, 0.1267123287671233, 0.11643835616438356, 0.11301369863013698, 0.10616438356164383, 0.1095890410958904, 0.9417808219178082, 0.8801369863013698, 0.10616438356164383, 0.08561643835616438, 0.0684931506849315, 0.06506849315068493, 0.05821917808219178, 0.04794520547945205, 0.0410958904109589, 0.030821917808219176, 0.030821917808219176, 0.07876712328767123, 0.6506849315068494, 0.02054794520547945, 0.02054794520547945, 0.797945205479452, 0.02054794520547945, 0.02054794520547945, 0.0136986301369863, 0.0136986301369863, 0.0136986301369863, 0.0136986301369863, 0.0136986301369863, 0.0136986301369863, 0.02054794520547945, 0.023972602739726026, 0.017123287671232876, 0.0136986301369863, 0.0136986301369863, 0.0136986301369863, 0.0136986301369863, 0.0136986301369863, 0.0136986301369863, 0.017123287671232876, 0.017123287671232876, 0.017123287671232876, 0.0136986301369863, 0.0136986301369863, 0.017123287671232876, 0.017123287671232876, 0.017123287671232876, 0.017123287671232876, 0.017123287671232876, 0.02054794520547945, 0.023972602739726026, 0.023972602739726026, 0.030821917808219176, 0.0684931506849315, 0.136986301369863, 0.14726027397260275, 0.08561643835616438, 0.030821917808219176, 0.023972602739726026, 0.023972602739726026, 0.0136986301369863, 0.010273972602739725, 0.0136986301369863, 0.010273972602739725, 0.010273972602739725, 0.010273972602739725, 0.010273972602739725, 0.010273972602739725, 0.010273972602739725, 0.010273972602739725, 0.010273972602739725, 0.010273972602739725, 0.010273972602739725, 0.010273972602739725, 0.010273972602739725, 0.010273972602739725, 0.9143835616438356, 0.010273972602739725, 0.010273972602739725, 0.04794520547945205, 0.023972602739726026, 0.04452054794520548, 0.0136986301369863, 0.02054794520547945, 0.017123287671232876, 0.017123287671232876, 0.017123287671232876, 0.017123287671232876, 0.017123287671232876, 0.017123287671232876, 0.017123287671232876, 0.017123287671232876, 0.017123287671232876, 0.017123287671232876, 0.017123287671232876, 0.02054794520547945, 0.023972602739726026, 0.0273972602739726, 0.0273972602739726, 0.030821917808219176, 0.03424657534246575, 0.04452054794520548, 0.0958904109589041, 0.21575342465753425, 0.3732876712328767, 0.6267123287671232], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/SoxZ.gap.json b/pfam_gap_rates/SoxZ.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f95029d2e0705dc3cabad5f48ac04578982f783c
--- /dev/null
+++ b/pfam_gap_rates/SoxZ.gap.json
@@ -0,0 +1 @@
+{"family": "SoxZ", "n_seqs": 330, "length": 95, "gap_rates": [0.7757575757575758, 0.7303030303030303, 0.4666666666666667, 0.31212121212121213, 0.2545454545454545, 0.20909090909090908, 0.17272727272727273, 0.15454545454545454, 0.12424242424242424, 0.08787878787878788, 0.051515151515151514, 0.030303030303030304, 0.015151515151515152, 0.015151515151515152, 0.015151515151515152, 0.015151515151515152, 0.015151515151515152, 0.015151515151515152, 0.015151515151515152, 0.006060606060606061, 0.01818181818181818, 0.015151515151515152, 0.01818181818181818, 0.00909090909090909, 0.00909090909090909, 0.024242424242424242, 0.06060606060606061, 0.07272727272727272, 0.49696969696969695, 0.20606060606060606, 0.1303030303030303, 0.12424242424242424, 0.07575757575757576, 0.03939393939393939, 0.00909090909090909, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.4909090909090909, 0.16363636363636364, 0.08787878787878788, 0.06666666666666667, 0.0030303030303030303, 0.0030303030303030303, 0.0030303030303030303, 0.0030303030303030303, 0.0030303030303030303, 0.0030303030303030303, 0.0030303030303030303, 0.0030303030303030303, 0.0030303030303030303, 0.0030303030303030303, 0.0030303030303030303, 0.0030303030303030303, 0.00909090909090909, 0.00909090909090909, 0.01818181818181818, 0.030303030303030304, 0.048484848484848485, 0.10606060606060606, 0.21515151515151515, 0.5303030303030303], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Spin-Ssty.gap.json b/pfam_gap_rates/Spin-Ssty.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a602b4d62d6dda8d2b99da6bfdb4387802b791a5
--- /dev/null
+++ b/pfam_gap_rates/Spin-Ssty.gap.json
@@ -0,0 +1 @@
+{"family": "Spin-Ssty", "n_seqs": 371, "length": 50, "gap_rates": [0.07277628032345014, 0.05390835579514825, 0.029649595687331536, 0.029649595687331536, 0.026954177897574125, 0.0215633423180593, 0.018867924528301886, 0.018867924528301886, 0.018867924528301886, 0.008086253369272238, 0.008086253369272238, 0.008086253369272238, 0.3423180592991914, 0.33423180592991913, 0.33153638814016173, 0.33153638814016173, 0.0026954177897574125, 0.0026954177897574125, 0.0026954177897574125, 0.005390835579514825, 0.005390835579514825, 0.005390835579514825, 0.005390835579514825, 0.0026954177897574125, 0.005390835579514825, 0.005390835579514825, 0.005390835579514825, 0.005390835579514825, 0.005390835579514825, 0.0026954177897574125, 0.0026954177897574125, 0.0026954177897574125, 0.0026954177897574125, 0.0026954177897574125, 0.0026954177897574125, 0.013477088948787063, 0.01078167115902965, 0.01078167115902965, 0.01078167115902965, 0.01078167115902965, 0.01078167115902965, 0.01078167115902965, 0.01078167115902965, 0.01078167115902965, 0.01078167115902965, 0.01078167115902965, 0.01078167115902965, 0.01078167115902965, 0.013477088948787063, 0.0889487870619946], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/SpoIID.gap.json b/pfam_gap_rates/SpoIID.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..0b35133abe092c74e44d692a9616f3999dca949b
--- /dev/null
+++ b/pfam_gap_rates/SpoIID.gap.json
@@ -0,0 +1 @@
+{"family": "SpoIID", "n_seqs": 1255, "length": 133, "gap_rates": [0.8143426294820717, 0.5426294820717131, 0.398406374501992, 0.3298804780876494, 0.2621513944223108, 0.20239043824701194, 0.17609561752988048, 0.14661354581673305, 0.10438247011952191, 0.07569721115537849, 0.06055776892430279, 0.05657370517928287, 0.04780876494023904, 0.03266932270916335, 0.027091633466135457, 0.022310756972111555, 0.020717131474103586, 0.019123505976095617, 0.0199203187250996, 0.11075697211155379, 0.11075697211155379, 0.009561752988047808, 0.008764940239043825, 0.006374501992031873, 0.00796812749003984, 0.007171314741035857, 0.00796812749003984, 0.011155378486055778, 0.00398406374501992, 0.007171314741035857, 0.0031872509960159364, 0.0031872509960159364, 0.00398406374501992, 0.00398406374501992, 0.004780876494023904, 0.004780876494023904, 0.004780876494023904, 0.004780876494023904, 0.00398406374501992, 0.00398406374501992, 0.00398406374501992, 0.00398406374501992, 0.00398406374501992, 0.00398406374501992, 0.004780876494023904, 0.8900398406374502, 0.9091633466135458, 0.8772908366533865, 0.005577689243027889, 0.05258964143426295, 0.6900398406374502, 0.7960159362549801, 0.8669322709163346, 0.9155378486055777, 0.9266932270916335, 0.9322709163346613, 0.9394422310756972, 0.9426294820717132, 0.9458167330677291, 0.9482071713147411, 0.949800796812749, 0.949800796812749, 0.9466135458167331, 0.9442231075697212, 0.9402390438247012, 0.9378486055776892, 0.9306772908366534, 0.9195219123505977, 0.9067729083665339, 0.8302788844621514, 0.750597609561753, 0.6621513944223107, 0.2358565737051793, 0.31235059760956174, 0.2095617529880478, 0.149800796812749, 0.08127490039840637, 0.055776892430278883, 0.05338645418326693, 0.03904382470119522, 0.6892430278884463, 0.02948207171314741, 0.8613545816733068, 0.02390438247011952, 0.023107569721115537, 0.02549800796812749, 0.024701195219123506, 0.02549800796812749, 0.8342629482071713, 0.03824701195219123, 0.034262948207171316, 0.028685258964143426, 0.027888446215139442, 0.02948207171314741, 0.031075697211155377, 0.031075697211155377, 0.03266932270916335, 0.7250996015936255, 0.749800796812749, 0.7633466135458168, 0.7737051792828685, 0.900398406374502, 0.7856573705179283, 0.7689243027888446, 0.7537848605577689, 0.7370517928286853, 0.7155378486055777, 0.08366533864541832, 0.2788844621513944, 0.24063745019920318, 0.24143426294820716, 0.2446215139442231, 0.9458167330677291, 0.9243027888446215, 0.4581673306772908, 0.2940239043824701, 0.1394422310756972, 0.062151394422310755, 0.0549800796812749, 0.054183266932270914, 0.05179282868525897, 0.05179282868525897, 0.05338645418326693, 0.05657370517928287, 0.05896414342629482, 0.06454183266932272, 0.06772908366533864, 0.07171314741035857, 0.07330677290836653, 0.07729083665338646, 0.09322709163346614, 0.22231075697211156, 0.4], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/SpoIIE.gap.json b/pfam_gap_rates/SpoIIE.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..30914c70232715aa1c385cf97dc36a4884be9765
--- /dev/null
+++ b/pfam_gap_rates/SpoIIE.gap.json
@@ -0,0 +1 @@
+{"family": "SpoIIE", "n_seqs": 4855, "length": 258, "gap_rates": [0.8780638516992791, 0.4710607621009269, 0.2889804325437693, 0.2148300720906282, 0.16889804325437693, 0.11369721936148301, 0.0737384140061792, 0.06632337796086508, 0.06385169927909372, 0.06282183316168898, 0.06240988671472709, 0.06220391349124614, 0.0615859938208033, 0.060556127703398556, 0.9085478887744594, 0.9122554067971164, 0.909783728115345, 0.9085478887744594, 0.06014418125643666, 0.05787847579814624, 0.0572605561277034, 0.056848609680741506, 0.056230690010298665, 0.05602471678681771, 0.05520082389289392, 0.05540679711637487, 0.054170957775489186, 0.0533470648815654, 0.05314109165808445, 0.052729145211122555, 0.05231719876416066, 0.052729145211122555, 0.05211122554067971, 0.051287332646755925, 0.054994850669412974, 0.056230690010298665, 0.05643666323377961, 0.056848609680741506, 0.8564366632337796, 0.05540679711637487, 0.054170957775489186, 0.05314109165808445, 0.08321318228630278, 0.0650875386199794, 0.8028836251287332, 0.8780638516992791, 0.9151390319258497, 0.9388259526261586, 0.929557157569516, 0.8990731204943357, 0.8525231719876416, 0.760659114315139, 0.045108135942327494, 0.04098867147270855, 0.04037075180226571, 0.03954685890834191, 0.03810504634397528, 0.03810504634397528, 0.037281153450051494, 0.03769309989701339, 0.037281153450051494, 0.037281153450051494, 0.037281153450051494, 0.03769309989701339, 0.32028836251287335, 0.10072090628218332, 0.08959835221421215, 0.08362512873326468, 0.04181256436663234, 0.04407826982492276, 0.05211122554067971, 0.8041194644696189, 0.8539649845520082, 0.9054582904222451, 0.945417095777549, 0.8930998970133882, 0.8319258496395469, 0.768692070030896, 0.564778578784758, 0.07744593202883625, 0.037075180226570546, 0.030895983522142123, 0.029042224510813595, 0.027806385169927908, 0.027188465499485066, 0.027806385169927908, 0.028218331616889806, 0.029042224510813595, 0.9499485066941298, 0.9458290422245108, 0.11987641606591143, 0.07579814624098867, 0.03748712667353244, 0.03192584963954686, 0.0286302780638517, 0.028836251287332648, 0.0572605561277034, 0.028012358393408855, 0.027394438722966014, 0.024922760041194644, 0.026570545829042225, 0.02760041194644696, 0.026364572605561278, 0.07703398558187435, 0.032131822863027806, 0.025746652935118436, 0.025746652935118436, 0.024922760041194644, 0.024098867147270855, 0.02451081359423275, 0.02451081359423275, 0.024098867147270855, 0.024098867147270855, 0.45478887744593205, 0.21956745623069002, 0.8381050463439753, 0.9406797116374871, 0.8527291452111225, 0.7917610710607621, 0.04737384140061792, 0.03192584963954686, 0.03007209062821833, 0.028218331616889806, 0.028836251287332648, 0.02760041194644696, 0.03110195674562307, 0.029042224510813595, 0.027394438722966014, 0.02760041194644696, 0.029042224510813595, 0.027394438722966014, 0.8867147270854789, 0.862615859938208, 0.058496395468589084, 0.04963954685890834, 0.04490216271884655, 0.1635427394438723, 0.06467559217301751, 0.028836251287332648, 0.7033985581874357, 0.8580844490216272, 0.9064881565396499, 0.9256436663233779, 0.9351184346035015, 0.940885684860968, 0.9326467559217302, 0.921318228630278, 0.8968074150360453, 0.8028836251287332, 0.6669412976313079, 0.024922760041194644, 0.02121524201853759, 0.019979402677651904, 0.017713697219361484, 0.01812564366632338, 0.017713697219361484, 0.017507723995880537, 0.016477857878475798, 0.015859938208032956, 0.015859938208032956, 0.01565396498455201, 0.01709577754891864, 0.015447991761071062, 0.016065911431513903, 0.016889804325437692, 0.01627188465499485, 0.015447991761071062, 0.015447991761071062, 0.015859938208032956, 0.01565396498455201, 0.016477857878475798, 0.016477857878475798, 0.016683831101956745, 0.02121524201853759, 0.03316168898043254, 0.03419155509783728, 0.03542739443872297, 0.7761071060762101, 0.9437693099897013, 0.9188465499485067, 0.6366632337796087, 0.14994850669412976, 0.07785787847579814, 0.06920700308959835, 0.06735324407826983, 0.0698249227600412, 0.07971163748712667, 0.33903192584963954, 0.2654994850669413, 0.24263645726055613, 0.15303810504634396, 0.101956745623069, 0.09680741503604531, 0.08465499485066941, 0.9328527291452111, 0.09309989701338826, 0.08877445932028837, 0.08753861997940268, 0.08609680741503604, 0.22883625128733265, 0.22492276004119466, 0.913697219361483, 0.8720906282183316, 0.22945417095777548, 0.23110195674562306, 0.19258496395468588, 0.16601441812564366, 0.08856848609680741, 0.08486096807415036, 0.08403707518022657, 0.08218331616889804, 0.08218331616889804, 0.08218331616889804, 0.08218331616889804, 0.08280123583934089, 0.08321318228630278, 0.0850669412976313, 0.08527291452111226, 0.0867147270854789, 0.08856848609680741, 0.08959835221421215, 0.8562306900102986, 0.893923789907312, 0.9040164778578785, 0.9081359423274974, 0.9132852729145211, 0.917610710607621, 0.9229660144181256, 0.9248197734294542, 0.9373841400617919, 0.9425334706488157, 0.9406797116374871, 0.933470648815654, 0.9233779608650875, 0.9202883625128734, 0.9167868177136972, 0.9114315139031925, 0.9054582904222451, 0.8992790937178167, 0.886302780638517, 0.5555097837281153, 0.2539649845520082, 0.2619979402677652, 0.30010298661174045, 0.2121524201853759, 0.12255406797116375, 0.09557157569515963, 0.09412976313079299, 0.09392378990731205, 0.09433573635427395, 0.09495365602471678, 0.09536560247167868, 0.09701338825952627, 0.10010298661174047, 0.1145211122554068, 0.15262615859938208, 0.24963954685890835, 0.47147270854788875], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/SpoVG.gap.json b/pfam_gap_rates/SpoVG.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..755592c31b5d86ee84c812eafa7eede95d732562
--- /dev/null
+++ b/pfam_gap_rates/SpoVG.gap.json
@@ -0,0 +1 @@
+{"family": "SpoVG", "n_seqs": 590, "length": 87, "gap_rates": [0.21525423728813559, 0.18983050847457628, 0.17966101694915254, 0.09661016949152543, 0.05423728813559322, 0.04745762711864407, 0.03389830508474576, 0.03389830508474576, 0.02711864406779661, 0.030508474576271188, 0.025423728813559324, 0.03220338983050847, 0.9474576271186441, 0.05593220338983051, 0.020338983050847456, 0.013559322033898305, 0.8576271186440678, 0.013559322033898305, 0.001694915254237288, 0.001694915254237288, 0.001694915254237288, 0.001694915254237288, 0.001694915254237288, 0.001694915254237288, 0.001694915254237288, 0.001694915254237288, 0.001694915254237288, 0.001694915254237288, 0.001694915254237288, 0.023728813559322035, 0.003389830508474576, 0.003389830508474576, 0.001694915254237288, 0.001694915254237288, 0.003389830508474576, 0.003389830508474576, 0.001694915254237288, 0.001694915254237288, 0.001694915254237288, 0.001694915254237288, 0.001694915254237288, 0.003389830508474576, 0.001694915254237288, 0.003389830508474576, 0.9491525423728814, 0.001694915254237288, 0.001694915254237288, 0.001694915254237288, 0.001694915254237288, 0.0, 0.0, 0.0, 0.0, 0.001694915254237288, 0.0, 0.010169491525423728, 0.010169491525423728, 0.011864406779661017, 0.022033898305084745, 0.9440677966101695, 0.9440677966101695, 0.025423728813559324, 0.001694915254237288, 0.0, 0.0, 0.0, 0.003389830508474576, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.003389830508474576, 0.003389830508474576, 0.006779661016949152, 0.023728813559322035, 0.05084745762711865, 0.5677966101694916], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/SpoVS.gap.json b/pfam_gap_rates/SpoVS.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..91edf14c6f39b4cbb120a76305b3deaff5fbb364
--- /dev/null
+++ b/pfam_gap_rates/SpoVS.gap.json
@@ -0,0 +1 @@
+{"family": "SpoVS", "n_seqs": 446, "length": 83, "gap_rates": [0.2040358744394619, 0.08744394618834081, 0.03139013452914798, 0.020179372197309416, 0.013452914798206279, 0.011210762331838564, 0.011210762331838564, 0.011210762331838564, 0.011210762331838564, 0.011210762331838564, 0.011210762331838564, 0.008968609865470852, 0.006726457399103139, 0.006726457399103139, 0.004484304932735426, 0.002242152466367713, 0.004484304932735426, 0.004484304932735426, 0.002242152466367713, 0.002242152466367713, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.002242152466367713, 0.002242152466367713, 0.002242152466367713, 0.002242152466367713, 0.002242152466367713, 0.002242152466367713, 0.002242152466367713, 0.002242152466367713, 0.002242152466367713, 0.004484304932735426, 0.004484304932735426, 0.004484304932735426, 0.004484304932735426, 0.004484304932735426, 0.004484304932735426, 0.006726457399103139, 0.013452914798206279, 0.013452914798206279, 0.01569506726457399, 0.020179372197309416, 0.02242152466367713, 0.02242152466367713, 0.026905829596412557, 0.03139013452914798, 0.03139013452914798, 0.03139013452914798, 0.03139013452914798, 0.03587443946188341, 0.03811659192825112, 0.03811659192825112, 0.04035874439461883, 0.04035874439461883, 0.04035874439461883, 0.04484304932735426, 0.05829596412556054, 0.06726457399103139, 0.07623318385650224, 0.08071748878923767, 0.08295964125560538, 0.08295964125560538, 0.08520179372197309, 0.08968609865470852, 0.08968609865470852, 0.09641255605381166, 0.09865470852017937, 0.1031390134529148, 0.10538116591928251, 0.10762331838565023, 0.1210762331838565, 0.40582959641255606], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/SpoVT_C.gap.json b/pfam_gap_rates/SpoVT_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..78e3455e01c3c646da6cadaf170c71676fd54577
--- /dev/null
+++ b/pfam_gap_rates/SpoVT_C.gap.json
@@ -0,0 +1 @@
+{"family": "SpoVT_C", "n_seqs": 433, "length": 135, "gap_rates": [0.20323325635103925, 0.14318706697459585, 0.11778290993071594, 0.06466512702078522, 0.04387990762124711, 0.03002309468822171, 0.020785219399538105, 0.018475750577367205, 0.016166281755196306, 0.016166281755196306, 0.016166281755196306, 0.016166281755196306, 0.013856812933025405, 0.013856812933025405, 0.013856812933025405, 0.013856812933025405, 0.013856812933025405, 0.013856812933025405, 0.013856812933025405, 0.9491916859122402, 0.013856812933025405, 0.013856812933025405, 0.013856812933025405, 0.013856812933025405, 0.013856812933025405, 0.013856812933025405, 0.013856812933025405, 0.018475750577367205, 0.016166281755196306, 0.011547344110854504, 0.011547344110854504, 0.011547344110854504, 0.011547344110854504, 0.011547344110854504, 0.023094688221709007, 0.020785219399538105, 0.020785219399538105, 0.03926096997690531, 0.9422632794457275, 0.018475750577367205, 0.011547344110854504, 0.011547344110854504, 0.009237875288683603, 0.006928406466512702, 0.006928406466512702, 0.006928406466512702, 0.006928406466512702, 0.006928406466512702, 0.006928406466512702, 0.006928406466512702, 0.006928406466512702, 0.009237875288683603, 0.009237875288683603, 0.009237875288683603, 0.004618937644341801, 0.004618937644341801, 0.004618937644341801, 0.004618937644341801, 0.004618937644341801, 0.004618937644341801, 0.011547344110854504, 0.009237875288683603, 0.006928406466512702, 0.009237875288683603, 0.04157043879907621, 0.7875288683602771, 0.03233256351039261, 0.06235565819861432, 0.02771362586605081, 0.02771362586605081, 0.025404157043879907, 0.023094688221709007, 0.6212471131639723, 0.9191685912240185, 0.8244803695150116, 0.5127020785219399, 0.15473441108545036, 0.9168591224018475, 0.8545034642032333, 0.025404157043879907, 0.006928406466512702, 0.004618937644341801, 0.011547344110854504, 0.10392609699769054, 0.006928406466512702, 0.006928406466512702, 0.006928406466512702, 0.006928406466512702, 0.0023094688221709007, 0.0023094688221709007, 0.0023094688221709007, 0.0023094688221709007, 0.0023094688221709007, 0.0023094688221709007, 0.0023094688221709007, 0.0023094688221709007, 0.0023094688221709007, 0.0023094688221709007, 0.0023094688221709007, 0.0023094688221709007, 0.0, 0.0023094688221709007, 0.0023094688221709007, 0.0023094688221709007, 0.0023094688221709007, 0.0023094688221709007, 0.0023094688221709007, 0.004618937644341801, 0.004618937644341801, 0.0023094688221709007, 0.016166281755196306, 0.025404157043879907, 0.046189376443418015, 0.3371824480369515, 0.18706697459584296, 0.03002309468822171, 0.03002309468822171, 0.02771362586605081, 0.02771362586605081, 0.02771362586605081, 0.03233256351039261, 0.03464203233256351, 0.03464203233256351, 0.03695150115473441, 0.03695150115473441, 0.04387990762124711, 0.046189376443418015, 0.04849884526558892, 0.050808314087759814, 0.050808314087759814, 0.05542725173210162, 0.057736720554272515, 0.06697459584295612, 0.07390300230946882, 0.16166281755196305], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/SprB.gap.json b/pfam_gap_rates/SprB.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..8d093f9042f63c6fe6f9a5c16e7b4b97b789d15c
--- /dev/null
+++ b/pfam_gap_rates/SprB.gap.json
@@ -0,0 +1 @@
+{"family": "SprB", "n_seqs": 1551, "length": 38, "gap_rates": [0.8794326241134752, 0.627337201805287, 0.3965183752417795, 0.27724049000644746, 0.19987105093488072, 0.1650548033526757, 0.10896196002578981, 0.07930367504835589, 0.06060606060606061, 0.15344938749194068, 0.1283043197936815, 0.039974210186976146, 0.030947775628626693, 0.019987105093488073, 0.013539651837524178, 0.006447453255963894, 0.0051579626047711154, 0.0038684719535783366, 0.0019342359767891683, 0.9245647969052224, 0.0, 0.0006447453255963894, 0.0006447453255963894, 0.0006447453255963894, 0.0038684719535783366, 0.0025789813023855577, 0.0038684719535783366, 0.0025789813023855577, 0.003223726627981947, 0.008381689232753063, 0.018697614442295292, 0.026434558349451968, 0.07414571244358478, 0.10444874274661509, 0.16247582205029013, 0.24242424242424243, 0.40554480980012897, 0.7350096711798839], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/SsgA.gap.json b/pfam_gap_rates/SsgA.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..be66cca213c39ecf92eadbae12daa8267961ed8f
--- /dev/null
+++ b/pfam_gap_rates/SsgA.gap.json
@@ -0,0 +1 @@
+{"family": "SsgA", "n_seqs": 182, "length": 102, "gap_rates": [0.2032967032967033, 0.0989010989010989, 0.03296703296703297, 0.005494505494505495, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.8021978021978022, 0.8406593406593407, 0.7967032967032966, 0.10989010989010989, 0.06593406593406594, 0.027472527472527472, 0.01098901098901099, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.01098901098901099, 0.3901098901098901, 0.3131868131868132, 0.25274725274725274, 0.9175824175824175, 0.005494505494505495, 0.005494505494505495, 0.005494505494505495, 0.005494505494505495, 0.005494505494505495, 0.005494505494505495, 0.005494505494505495, 0.005494505494505495, 0.005494505494505495, 0.005494505494505495, 0.005494505494505495, 0.005494505494505495, 0.005494505494505495, 0.005494505494505495, 0.005494505494505495, 0.005494505494505495, 0.005494505494505495, 0.005494505494505495, 0.005494505494505495, 0.005494505494505495, 0.005494505494505495, 0.005494505494505495, 0.005494505494505495, 0.005494505494505495, 0.005494505494505495, 0.005494505494505495, 0.005494505494505495, 0.005494505494505495, 0.005494505494505495, 0.005494505494505495, 0.005494505494505495, 0.01098901098901099, 0.01098901098901099, 0.016483516483516484, 0.03296703296703297, 0.038461538461538464, 0.04945054945054945, 0.04945054945054945, 0.06043956043956044], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Stathmin.gap.json b/pfam_gap_rates/Stathmin.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b09f91449be1a9a0871c500529863eb155925ca8
--- /dev/null
+++ b/pfam_gap_rates/Stathmin.gap.json
@@ -0,0 +1 @@
+{"family": "Stathmin", "n_seqs": 170, "length": 142, "gap_rates": [0.48823529411764705, 0.40588235294117647, 0.40588235294117647, 0.3941176470588235, 0.38823529411764707, 0.38235294117647056, 0.37058823529411766, 0.3588235294117647, 0.3352941176470588, 0.29411764705882354, 0.2823529411764706, 0.23529411764705882, 0.21764705882352942, 0.20588235294117646, 0.19411764705882353, 0.18823529411764706, 0.18823529411764706, 0.18235294117647058, 0.18235294117647058, 0.18235294117647058, 0.18235294117647058, 0.17647058823529413, 0.17647058823529413, 0.17647058823529413, 0.17058823529411765, 0.19411764705882353, 0.20588235294117646, 0.8588235294117647, 0.9117647058823529, 0.9470588235294117, 0.8941176470588236, 0.7176470588235294, 0.28823529411764703, 0.21176470588235294, 0.20588235294117646, 0.17058823529411765, 0.15294117647058825, 0.14705882352941177, 0.1411764705882353, 0.14705882352941177, 0.12352941176470589, 0.11764705882352941, 0.11764705882352941, 0.11764705882352941, 0.11764705882352941, 0.18823529411764706, 0.11176470588235295, 0.11764705882352941, 0.11176470588235295, 0.9411764705882353, 0.10588235294117647, 0.1, 0.09411764705882353, 0.09411764705882353, 0.09411764705882353, 0.09411764705882353, 0.09411764705882353, 0.09411764705882353, 0.09411764705882353, 0.09411764705882353, 0.09411764705882353, 0.09411764705882353, 0.09411764705882353, 0.07647058823529412, 0.06470588235294118, 0.07058823529411765, 0.08235294117647059, 0.08823529411764706, 0.09411764705882353, 0.10588235294117647, 0.1, 0.1, 0.09411764705882353, 0.1, 0.10588235294117647, 0.1, 0.10588235294117647, 0.10588235294117647, 0.11176470588235295, 0.11176470588235295, 0.11764705882352941, 0.13529411764705881, 0.1411764705882353, 0.1411764705882353, 0.1411764705882353, 0.15294117647058825, 0.1411764705882353, 0.13529411764705881, 0.12352941176470589, 0.12941176470588237, 0.13529411764705881, 0.1411764705882353, 0.16470588235294117, 0.17058823529411765, 0.1588235294117647, 0.12352941176470589, 0.12352941176470589, 0.12352941176470589, 0.12352941176470589, 0.12941176470588237, 0.13529411764705881, 0.13529411764705881, 0.12941176470588237, 0.12941176470588237, 0.13529411764705881, 0.12941176470588237, 0.12941176470588237, 0.12941176470588237, 0.12941176470588237, 0.12941176470588237, 0.12941176470588237, 0.12941176470588237, 0.12941176470588237, 0.12941176470588237, 0.12941176470588237, 0.12941176470588237, 0.12941176470588237, 0.12941176470588237, 0.12941176470588237, 0.12941176470588237, 0.12941176470588237, 0.12941176470588237, 0.12941176470588237, 0.12941176470588237, 0.12941176470588237, 0.12941176470588237, 0.13529411764705881, 0.13529411764705881, 0.16470588235294117, 0.17058823529411765, 0.18823529411764706, 0.18823529411764706, 0.2235294117647059, 0.21764705882352942, 0.21764705882352942, 0.22941176470588234, 0.2411764705882353, 0.24705882352941178, 0.2647058823529412, 0.3176470588235294, 0.4294117647058823, 0.7764705882352941], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Staygreen.gap.json b/pfam_gap_rates/Staygreen.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..62687abe29f7855b8777660b69f09e30056b04e4
--- /dev/null
+++ b/pfam_gap_rates/Staygreen.gap.json
@@ -0,0 +1 @@
+{"family": "Staygreen", "n_seqs": 127, "length": 156, "gap_rates": [0.6299212598425197, 0.18110236220472442, 0.16535433070866143, 0.14960629921259844, 0.11811023622047244, 0.11811023622047244, 0.11811023622047244, 0.11811023622047244, 0.11811023622047244, 0.11811023622047244, 0.11811023622047244, 0.11811023622047244, 0.11023622047244094, 0.12598425196850394, 0.11023622047244094, 0.905511811023622, 0.5511811023622047, 0.09448818897637795, 0.09448818897637795, 0.07086614173228346, 0.06299212598425197, 0.06299212598425197, 0.06299212598425197, 0.06299212598425197, 0.05511811023622047, 0.05511811023622047, 0.05511811023622047, 0.047244094488188976, 0.047244094488188976, 0.047244094488188976, 0.047244094488188976, 0.047244094488188976, 0.047244094488188976, 0.047244094488188976, 0.047244094488188976, 0.05511811023622047, 0.047244094488188976, 0.047244094488188976, 0.05511811023622047, 0.047244094488188976, 0.047244094488188976, 0.047244094488188976, 0.047244094488188976, 0.047244094488188976, 0.047244094488188976, 0.047244094488188976, 0.047244094488188976, 0.047244094488188976, 0.047244094488188976, 0.047244094488188976, 0.047244094488188976, 0.07086614173228346, 0.06299212598425197, 0.25196850393700787, 0.5511811023622047, 0.5748031496062992, 0.5669291338582677, 0.4330708661417323, 0.07874015748031496, 0.06299212598425197, 0.06299212598425197, 0.06299212598425197, 0.06299212598425197, 0.06299212598425197, 0.06299212598425197, 0.06299212598425197, 0.06299212598425197, 0.06299212598425197, 0.9212598425196851, 0.06299212598425197, 0.06299212598425197, 0.06299212598425197, 0.07086614173228346, 0.9291338582677166, 0.11023622047244094, 0.08661417322834646, 0.07874015748031496, 0.07086614173228346, 0.047244094488188976, 0.047244094488188976, 0.047244094488188976, 0.047244094488188976, 0.05511811023622047, 0.05511811023622047, 0.05511811023622047, 0.11023622047244094, 0.2047244094488189, 0.08661417322834646, 0.06299212598425197, 0.07086614173228346, 0.07874015748031496, 0.06299212598425197, 0.07874015748031496, 0.44881889763779526, 0.15748031496062992, 0.07874015748031496, 0.06299212598425197, 0.06299212598425197, 0.06299212598425197, 0.06299212598425197, 0.06299212598425197, 0.06299212598425197, 0.06299212598425197, 0.06299212598425197, 0.06299212598425197, 0.06299212598425197, 0.06299212598425197, 0.06299212598425197, 0.06299212598425197, 0.047244094488188976, 0.06299212598425197, 0.06299212598425197, 0.06299212598425197, 0.06299212598425197, 0.06299212598425197, 0.06299212598425197, 0.06299212598425197, 0.06299212598425197, 0.06299212598425197, 0.06299212598425197, 0.06299212598425197, 0.06299212598425197, 0.06299212598425197, 0.06299212598425197, 0.06299212598425197, 0.06299212598425197, 0.06299212598425197, 0.06299212598425197, 0.06299212598425197, 0.06299212598425197, 0.06299212598425197, 0.06299212598425197, 0.07086614173228346, 0.07086614173228346, 0.07086614173228346, 0.07086614173228346, 0.07086614173228346, 0.07086614173228346, 0.07086614173228346, 0.07086614173228346, 0.07086614173228346, 0.07086614173228346, 0.07086614173228346, 0.07086614173228346, 0.07086614173228346, 0.07874015748031496, 0.07086614173228346, 0.07874015748031496, 0.07874015748031496, 0.08661417322834646, 0.08661417322834646, 0.08661417322834646, 0.09448818897637795, 0.11811023622047244, 0.14960629921259844, 0.3464566929133858], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Stealth_CR2.gap.json b/pfam_gap_rates/Stealth_CR2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c129c82fe069f86cb7923183f9a8758743191a57
--- /dev/null
+++ b/pfam_gap_rates/Stealth_CR2.gap.json
@@ -0,0 +1 @@
+{"family": "Stealth_CR2", "n_seqs": 381, "length": 122, "gap_rates": [0.2650918635170604, 0.2335958005249344, 0.2178477690288714, 0.2099737532808399, 0.2047244094488189, 0.1994750656167979, 0.1889763779527559, 0.1889763779527559, 0.1889763779527559, 0.1889763779527559, 0.1889763779527559, 0.1889763779527559, 0.1889763779527559, 0.1889763779527559, 0.1889763779527559, 0.1889763779527559, 0.1889763779527559, 0.1889763779527559, 0.1732283464566929, 0.1732283464566929, 0.1732283464566929, 0.17060367454068243, 0.17060367454068243, 0.9396325459317585, 0.17060367454068243, 0.17060367454068243, 0.17060367454068243, 0.16535433070866143, 0.1679790026246719, 0.1679790026246719, 0.16010498687664043, 0.11548556430446194, 0.11023622047244094, 0.10761154855643044, 0.10236220472440945, 0.10236220472440945, 0.10236220472440945, 0.09973753280839895, 0.1784776902887139, 0.12860892388451445, 0.09186351706036745, 0.08136482939632546, 0.8188976377952756, 0.847769028871391, 0.8871391076115486, 0.910761154855643, 0.9212598425196851, 0.9186351706036745, 0.8923884514435696, 0.8556430446194225, 0.8241469816272966, 0.8031496062992126, 0.06299212598425197, 0.9343832020997376, 0.05249343832020997, 0.049868766404199474, 0.05249343832020997, 0.049868766404199474, 0.049868766404199474, 0.049868766404199474, 0.04199475065616798, 0.04199475065616798, 0.04461942257217848, 0.04199475065616798, 0.04199475065616798, 0.04461942257217848, 0.05249343832020997, 0.9291338582677166, 0.04199475065616798, 0.03412073490813648, 0.35170603674540685, 0.9291338582677166, 0.03412073490813648, 0.031496062992125984, 0.028871391076115485, 0.028871391076115485, 0.028871391076115485, 0.028871391076115485, 0.028871391076115485, 0.026246719160104987, 0.026246719160104987, 0.026246719160104987, 0.026246719160104987, 0.028871391076115485, 0.026246719160104987, 0.026246719160104987, 0.028871391076115485, 0.031496062992125984, 0.04461942257217848, 0.9396325459317585, 0.031496062992125984, 0.03412073490813648, 0.031496062992125984, 0.031496062992125984, 0.031496062992125984, 0.031496062992125984, 0.031496062992125984, 0.031496062992125984, 0.031496062992125984, 0.031496062992125984, 0.031496062992125984, 0.031496062992125984, 0.031496062992125984, 0.031496062992125984, 0.031496062992125984, 0.031496062992125984, 0.03412073490813648, 0.03674540682414698, 0.04199475065616798, 0.04461942257217848, 0.04461942257217848, 0.047244094488188976, 0.05511811023622047, 0.06036745406824147, 0.07086614173228346, 0.07086614173228346, 0.2099737532808399, 0.2073490813648294, 0.3123359580052493, 0.45144356955380577, 0.6194225721784777, 0.868766404199475], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Stig1.gap.json b/pfam_gap_rates/Stig1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..0f2b4e5fe0a1196192d672dae88393a0d0d2e660
--- /dev/null
+++ b/pfam_gap_rates/Stig1.gap.json
@@ -0,0 +1 @@
+{"family": "Stig1", "n_seqs": 288, "length": 152, "gap_rates": [0.9305555555555556, 0.9270833333333334, 0.9236111111111112, 0.9131944444444444, 0.9097222222222222, 0.9097222222222222, 0.9097222222222222, 0.9027777777777778, 0.8923611111111112, 0.8923611111111112, 0.8854166666666666, 0.8819444444444444, 0.8784722222222222, 0.8784722222222222, 0.8680555555555556, 0.8645833333333334, 0.8541666666666666, 0.8645833333333334, 0.8506944444444444, 0.8506944444444444, 0.8368055555555556, 0.8368055555555556, 0.8368055555555556, 0.9305555555555556, 0.8333333333333334, 0.8194444444444444, 0.8055555555555556, 0.7916666666666666, 0.7986111111111112, 0.7986111111111112, 0.7986111111111112, 0.7118055555555556, 0.9027777777777778, 0.9097222222222222, 0.9270833333333334, 0.9409722222222222, 0.9201388888888888, 0.9027777777777778, 0.9027777777777778, 0.6736111111111112, 0.6666666666666666, 0.6493055555555556, 0.6284722222222222, 0.6145833333333334, 0.5902777777777778, 0.5833333333333334, 0.5798611111111112, 0.5763888888888888, 0.5694444444444444, 0.5659722222222222, 0.5625, 0.5590277777777778, 0.5798611111111112, 0.9097222222222222, 0.8854166666666666, 0.7638888888888888, 0.7118055555555556, 0.6180555555555556, 0.5451388888888888, 0.5243055555555556, 0.5034722222222222, 0.5034722222222222, 0.4965277777777778, 0.4895833333333333, 0.4826388888888889, 0.4861111111111111, 0.4861111111111111, 0.4826388888888889, 0.4826388888888889, 0.875, 0.4861111111111111, 0.4826388888888889, 0.4791666666666667, 0.4791666666666667, 0.4791666666666667, 0.5243055555555556, 0.9166666666666666, 0.5208333333333334, 0.5173611111111112, 0.4722222222222222, 0.4097222222222222, 0.3958333333333333, 0.3854166666666667, 0.8680555555555556, 0.9375, 0.90625, 0.8229166666666666, 0.3506944444444444, 0.3402777777777778, 0.3368055555555556, 0.34375, 0.3298611111111111, 0.3229166666666667, 0.3263888888888889, 0.3159722222222222, 0.3125, 0.3090277777777778, 0.2986111111111111, 0.3020833333333333, 0.2916666666666667, 0.2881944444444444, 0.2847222222222222, 0.2743055555555556, 0.14583333333333334, 0.13541666666666666, 0.13541666666666666, 0.1284722222222222, 0.11458333333333333, 0.0763888888888889, 0.020833333333333332, 0.020833333333333332, 0.020833333333333332, 0.020833333333333332, 0.020833333333333332, 0.010416666666666666, 0.006944444444444444, 0.006944444444444444, 0.003472222222222222, 0.003472222222222222, 0.003472222222222222, 0.003472222222222222, 0.003472222222222222, 0.010416666666666666, 0.013888888888888888, 0.020833333333333332, 0.027777777777777776, 0.034722222222222224, 0.03125, 0.034722222222222224, 0.03125, 0.03125, 0.03125, 0.03125, 0.03125, 0.03125, 0.03125, 0.034722222222222224, 0.034722222222222224, 0.09722222222222222, 0.1076388888888889, 0.0763888888888889, 0.06944444444444445, 0.09375, 0.06944444444444445, 0.0763888888888889, 0.0798611111111111, 0.08333333333333333, 0.08680555555555555, 0.09027777777777778, 0.2222222222222222, 0.4409722222222222, 0.5520833333333334], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Suc_Fer-like.gap.json b/pfam_gap_rates/Suc_Fer-like.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..9a395e482c7774b2765f1f878ac2fb2f35a03743
--- /dev/null
+++ b/pfam_gap_rates/Suc_Fer-like.gap.json
@@ -0,0 +1 @@
+{"family": "Suc_Fer-like", "n_seqs": 540, "length": 381, "gap_rates": [0.512962962962963, 0.37777777777777777, 0.3277777777777778, 0.3111111111111111, 0.29444444444444445, 0.28888888888888886, 0.2796296296296296, 0.2722222222222222, 0.25555555555555554, 0.24444444444444444, 0.2388888888888889, 0.23333333333333334, 0.22962962962962963, 0.22962962962962963, 0.22777777777777777, 0.22777777777777777, 0.22592592592592592, 0.38333333333333336, 0.8962962962962963, 0.7759259259259259, 0.22592592592592592, 0.22592592592592592, 0.22592592592592592, 0.22592592592592592, 0.22592592592592592, 0.22592592592592592, 0.774074074074074, 0.22592592592592592, 0.22777777777777777, 0.22592592592592592, 0.22777777777777777, 0.2574074074074074, 0.2759259259259259, 0.7203703703703703, 0.8944444444444445, 0.9314814814814815, 0.837037037037037, 0.6796296296296296, 0.23333333333333334, 0.22777777777777777, 0.22777777777777777, 0.22777777777777777, 0.22777777777777777, 0.22592592592592592, 0.23148148148148148, 0.2351851851851852, 0.3055555555555556, 0.7555555555555555, 0.2759259259259259, 0.3814814814814815, 0.4148148148148148, 0.4925925925925926, 0.6444444444444445, 0.7129629629629629, 0.8351851851851851, 0.8666666666666667, 0.8962962962962963, 0.912962962962963, 0.9185185185185185, 0.9203703703703704, 0.9333333333333333, 0.9407407407407408, 0.9462962962962963, 0.95, 0.9444444444444444, 0.937037037037037, 0.924074074074074, 0.9203703703703704, 0.9148148148148149, 0.9074074074074074, 0.8796296296296297, 0.8537037037037037, 0.7425925925925926, 0.6796296296296296, 0.562962962962963, 0.4648148148148148, 0.39814814814814814, 0.37222222222222223, 0.24814814814814815, 0.337037037037037, 0.3296296296296296, 0.32407407407407407, 0.32037037037037036, 0.3277777777777778, 0.32592592592592595, 0.32037037037037036, 0.21666666666666667, 0.4388888888888889, 0.5981481481481481, 0.6666666666666666, 0.7685185185185185, 0.8074074074074075, 0.8907407407407407, 0.9148148148148149, 0.9296296296296296, 0.9388888888888889, 0.9425925925925925, 0.937037037037037, 0.924074074074074, 0.9037037037037037, 0.8796296296296297, 0.7962962962962963, 0.7351851851851852, 0.6222222222222222, 0.4740740740740741, 0.39814814814814814, 0.25, 0.3611111111111111, 0.3037037037037037, 0.2611111111111111, 0.23333333333333334, 0.21666666666666667, 0.21296296296296297, 0.2111111111111111, 0.20925925925925926, 0.2074074074074074, 0.20555555555555555, 0.2037037037037037, 0.20185185185185187, 0.20185185185185187, 0.20185185185185187, 0.2037037037037037, 0.2037037037037037, 0.20925925925925926, 0.20925925925925926, 0.2037037037037037, 0.25, 0.9444444444444444, 0.9462962962962963, 0.9425925925925925, 0.22407407407407406, 0.22037037037037038, 0.20185185185185187, 0.8111111111111111, 0.9333333333333333, 0.95, 0.9425925925925925, 0.8981481481481481, 0.8, 0.18888888888888888, 0.19074074074074074, 0.18888888888888888, 0.18703703703703703, 0.18888888888888888, 0.20185185185185187, 0.19444444444444445, 0.19074074074074074, 0.19814814814814816, 0.20925925925925926, 0.21481481481481482, 0.2111111111111111, 0.22037037037037038, 0.14814814814814814, 0.19074074074074074, 0.22037037037037038, 0.26296296296296295, 0.44814814814814813, 0.5111111111111111, 0.5574074074074075, 0.6055555555555555, 0.6555555555555556, 0.6833333333333333, 0.7055555555555556, 0.7333333333333333, 0.7555555555555555, 0.7703703703703704, 0.8018518518518518, 0.8851851851851852, 0.9111111111111111, 0.9259259259259259, 0.9351851851851852, 0.9444444444444444, 0.9481481481481482, 0.9388888888888889, 0.9333333333333333, 0.9222222222222223, 0.9074074074074074, 0.8203703703703704, 0.7759259259259259, 0.7611111111111111, 0.7481481481481481, 0.7129629629629629, 0.7, 0.6777777777777778, 0.6407407407407407, 0.5648148148148148, 0.5296296296296297, 0.4777777777777778, 0.3907407407407407, 0.23333333333333334, 0.1962962962962963, 0.18703703703703703, 0.1425925925925926, 0.2611111111111111, 0.16296296296296298, 0.13148148148148148, 0.19444444444444445, 0.07777777777777778, 0.05925925925925926, 0.040740740740740744, 0.022222222222222223, 0.018518518518518517, 0.018518518518518517, 0.018518518518518517, 0.016666666666666666, 0.016666666666666666, 0.016666666666666666, 0.016666666666666666, 0.014814814814814815, 0.014814814814814815, 0.012962962962962963, 0.011111111111111112, 0.009259259259259259, 0.009259259259259259, 0.011111111111111112, 0.011111111111111112, 0.011111111111111112, 0.011111111111111112, 0.011111111111111112, 0.012962962962962963, 0.014814814814814815, 0.012962962962962963, 0.012962962962962963, 0.014814814814814815, 0.014814814814814815, 0.014814814814814815, 0.018518518518518517, 0.016666666666666666, 0.024074074074074074, 0.020370370370370372, 0.02962962962962963, 0.04259259259259259, 0.7703703703703704, 0.7777777777777778, 0.8092592592592592, 0.7962962962962963, 0.7703703703703704, 0.7537037037037037, 0.5796296296296296, 0.5685185185185185, 0.8462962962962963, 0.8518518518518519, 0.8518518518518519, 0.8592592592592593, 0.8611111111111112, 0.8666666666666667, 0.8666666666666667, 0.8759259259259259, 0.8796296296296297, 0.8851851851851852, 0.8907407407407407, 0.912962962962963, 0.9203703703703704, 0.924074074074074, 0.9314814814814815, 0.9333333333333333, 0.9351851851851852, 0.937037037037037, 0.9481481481481482, 0.9407407407407408, 0.937037037037037, 0.9351851851851852, 0.9314814814814815, 0.9277777777777778, 0.9222222222222223, 0.9185185185185185, 0.8981481481481481, 0.8870370370370371, 0.8814814814814815, 0.8796296296296297, 0.8703703703703703, 0.8666666666666667, 0.8666666666666667, 0.8611111111111112, 0.8555555555555555, 0.8518518518518519, 0.85, 0.8351851851851851, 0.3814814814814815, 0.337037037037037, 0.29444444444444445, 0.2833333333333333, 0.24259259259259258, 0.22037037037037038, 0.1685185185185185, 0.025925925925925925, 0.016666666666666666, 0.016666666666666666, 0.016666666666666666, 0.014814814814814815, 0.014814814814814815, 0.014814814814814815, 0.014814814814814815, 0.014814814814814815, 0.018518518518518517, 0.022222222222222223, 0.022222222222222223, 0.022222222222222223, 0.022222222222222223, 0.022222222222222223, 0.022222222222222223, 0.022222222222222223, 0.022222222222222223, 0.022222222222222223, 0.024074074074074074, 0.024074074074074074, 0.025925925925925925, 0.027777777777777776, 0.337037037037037, 0.687037037037037, 0.7814814814814814, 0.7833333333333333, 0.8, 0.812962962962963, 0.8685185185185185, 0.8814814814814815, 0.8833333333333333, 0.8907407407407407, 0.9, 0.9, 0.9, 0.9092592592592592, 0.9111111111111111, 0.9185185185185185, 0.9351851851851852, 0.9462962962962963, 0.9481481481481482, 0.9407407407407408, 0.9277777777777778, 0.9111111111111111, 0.9092592592592592, 0.9018518518518519, 0.9, 0.9, 0.8944444444444445, 0.8870370370370371, 0.8833333333333333, 0.8777777777777778, 0.8296296296296296, 0.8092592592592592, 0.7981481481481482, 0.7833333333333333, 0.7722222222222223, 0.6796296296296296, 0.587037037037037, 0.45185185185185184, 0.44074074074074077, 0.4185185185185185, 0.2611111111111111, 0.03148148148148148, 0.03518518518518519, 0.03888888888888889, 0.040740740740740744, 0.040740740740740744, 0.04259259259259259, 0.046296296296296294, 0.053703703703703705, 0.05740740740740741, 0.06666666666666667, 0.07037037037037037, 0.07777777777777778, 0.07962962962962963, 0.08333333333333333, 0.08888888888888889, 0.09814814814814815, 0.19814814814814816, 0.16111111111111112, 0.2037037037037037, 0.21296296296296297, 0.25925925925925924, 0.22962962962962963, 0.2611111111111111, 0.23703703703703705, 0.2388888888888889, 0.24814814814814815, 0.8703703703703703, 0.8629629629629629, 0.2518518518518518, 0.2537037037037037, 0.2574074074074074, 0.34444444444444444], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Sugar-bind.gap.json b/pfam_gap_rates/Sugar-bind.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..993264b7a5f45312e874c003b02f74067253a17e
--- /dev/null
+++ b/pfam_gap_rates/Sugar-bind.gap.json
@@ -0,0 +1 @@
+{"family": "Sugar-bind", "n_seqs": 1120, "length": 266, "gap_rates": [0.7383928571428572, 0.5964285714285714, 0.48125, 0.3794642857142857, 0.26339285714285715, 0.17232142857142857, 0.10892857142857143, 0.06875, 0.05803571428571429, 0.054464285714285715, 0.05178571428571429, 0.05, 0.049107142857142856, 0.049107142857142856, 0.049107142857142856, 0.049107142857142856, 0.04732142857142857, 0.04732142857142857, 0.060714285714285714, 0.07410714285714286, 0.04732142857142857, 0.04732142857142857, 0.04732142857142857, 0.04732142857142857, 0.04732142857142857, 0.05, 0.04732142857142857, 0.045535714285714284, 0.055357142857142855, 0.1375, 0.91875, 0.49375, 0.06964285714285715, 0.049107142857142856, 0.04375, 0.04017857142857143, 0.038392857142857145, 0.03571428571428571, 0.03214285714285714, 0.033035714285714286, 0.033035714285714286, 0.033035714285714286, 0.03214285714285714, 0.03214285714285714, 0.03214285714285714, 0.03214285714285714, 0.03214285714285714, 0.03214285714285714, 0.03125, 0.03125, 0.038392857142857145, 0.0375, 0.03125, 0.03125, 0.030357142857142857, 0.8964285714285715, 0.8258928571428571, 0.029464285714285714, 0.029464285714285714, 0.029464285714285714, 0.029464285714285714, 0.02857142857142857, 0.029464285714285714, 0.029464285714285714, 0.029464285714285714, 0.030357142857142857, 0.030357142857142857, 0.029464285714285714, 0.029464285714285714, 0.029464285714285714, 0.030357142857142857, 0.029464285714285714, 0.029464285714285714, 0.029464285714285714, 0.029464285714285714, 0.030357142857142857, 0.9107142857142857, 0.7098214285714286, 0.10714285714285714, 0.09017857142857143, 0.039285714285714285, 0.038392857142857145, 0.04642857142857143, 0.04107142857142857, 0.039285714285714285, 0.038392857142857145, 0.038392857142857145, 0.038392857142857145, 0.0375, 0.038392857142857145, 0.0375, 0.0375, 0.03660714285714286, 0.03660714285714286, 0.03660714285714286, 0.9241071428571429, 0.03660714285714286, 0.05089285714285714, 0.048214285714285716, 0.925, 0.5571428571428572, 0.049107142857142856, 0.059821428571428574, 0.05625, 0.05357142857142857, 0.05357142857142857, 0.05267857142857143, 0.04732142857142857, 0.04375, 0.04017857142857143, 0.038392857142857145, 0.039285714285714285, 0.039285714285714285, 0.038392857142857145, 0.039285714285714285, 0.0375, 0.0375, 0.03660714285714286, 0.03571428571428571, 0.03482142857142857, 0.03660714285714286, 0.03482142857142857, 0.03482142857142857, 0.03482142857142857, 0.03571428571428571, 0.03571428571428571, 0.03482142857142857, 0.044642857142857144, 0.03482142857142857, 0.0375, 0.03571428571428571, 0.03571428571428571, 0.03660714285714286, 0.26339285714285715, 0.03660714285714286, 0.033928571428571426, 0.033928571428571426, 0.03482142857142857, 0.03482142857142857, 0.03571428571428571, 0.03660714285714286, 0.03571428571428571, 0.03571428571428571, 0.03660714285714286, 0.03571428571428571, 0.03660714285714286, 0.03660714285714286, 0.03571428571428571, 0.03482142857142857, 0.03482142857142857, 0.03482142857142857, 0.03482142857142857, 0.03482142857142857, 0.03482142857142857, 0.03482142857142857, 0.03482142857142857, 0.03482142857142857, 0.03571428571428571, 0.03571428571428571, 0.03571428571428571, 0.03482142857142857, 0.03482142857142857, 0.033928571428571426, 0.03482142857142857, 0.03482142857142857, 0.8991071428571429, 0.8258928571428571, 0.038392857142857145, 0.04196428571428571, 0.04107142857142857, 0.29196428571428573, 0.28035714285714286, 0.3267857142857143, 0.054464285714285715, 0.060714285714285714, 0.059821428571428574, 0.05, 0.04285714285714286, 0.04196428571428571, 0.039285714285714285, 0.039285714285714285, 0.060714285714285714, 0.06875, 0.048214285714285716, 0.044642857142857144, 0.04642857142857143, 0.05089285714285714, 0.05357142857142857, 0.04107142857142857, 0.04017857142857143, 0.038392857142857145, 0.0375, 0.0375, 0.0375, 0.03660714285714286, 0.03571428571428571, 0.03482142857142857, 0.033928571428571426, 0.03482142857142857, 0.03482142857142857, 0.03482142857142857, 0.03482142857142857, 0.03571428571428571, 0.03571428571428571, 0.03571428571428571, 0.0375, 0.0375, 0.3196428571428571, 0.2714285714285714, 0.2669642857142857, 0.03571428571428571, 0.03660714285714286, 0.03660714285714286, 0.03571428571428571, 0.03571428571428571, 0.03571428571428571, 0.03571428571428571, 0.03571428571428571, 0.03571428571428571, 0.03571428571428571, 0.04375, 0.038392857142857145, 0.12321428571428572, 0.039285714285714285, 0.03660714285714286, 0.0375, 0.039285714285714285, 0.038392857142857145, 0.0375, 0.03660714285714286, 0.03660714285714286, 0.03660714285714286, 0.0375, 0.039285714285714285, 0.04017857142857143, 0.04017857142857143, 0.04107142857142857, 0.04107142857142857, 0.04107142857142857, 0.04107142857142857, 0.04107142857142857, 0.04107142857142857, 0.04107142857142857, 0.04107142857142857, 0.04107142857142857, 0.04196428571428571, 0.04107142857142857, 0.04107142857142857, 0.9205357142857142, 0.04107142857142857, 0.04107142857142857, 0.04107142857142857, 0.04107142857142857, 0.04107142857142857, 0.04107142857142857, 0.04107142857142857, 0.04285714285714286, 0.04375, 0.044642857142857144, 0.044642857142857144, 0.045535714285714284, 0.04732142857142857, 0.05267857142857143, 0.07767857142857143, 0.1625, 0.6], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Sulfatase_C.gap.json b/pfam_gap_rates/Sulfatase_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f1f313f2262e74e83163ad67f57dcbdcb0713802
--- /dev/null
+++ b/pfam_gap_rates/Sulfatase_C.gap.json
@@ -0,0 +1 @@
+{"family": "Sulfatase_C", "n_seqs": 444, "length": 164, "gap_rates": [0.5833333333333334, 0.3783783783783784, 0.20045045045045046, 0.07657657657657657, 0.06306306306306306, 0.0518018018018018, 0.04279279279279279, 0.04279279279279279, 0.04504504504504504, 0.038288288288288286, 0.038288288288288286, 0.038288288288288286, 0.03153153153153153, 0.8288288288288288, 0.8738738738738738, 0.8828828828828829, 0.8716216216216216, 0.704954954954955, 0.02927927927927928, 0.02252252252252252, 0.02252252252252252, 0.02027027027027027, 0.018018018018018018, 0.018018018018018018, 0.015765765765765764, 0.015765765765765764, 0.8333333333333334, 0.8378378378378378, 0.8445945945945946, 0.8423423423423423, 0.8378378378378378, 0.8333333333333334, 0.01126126126126126, 0.01126126126126126, 0.015765765765765764, 0.015765765765765764, 0.018018018018018018, 0.018018018018018018, 0.013513513513513514, 0.9054054054054054, 0.8243243243243243, 0.4752252252252252, 0.481981981981982, 0.4166666666666667, 0.8513513513513513, 0.9256756756756757, 0.9166666666666666, 0.8333333333333334, 0.4009009009009009, 0.29954954954954954, 0.22072072072072071, 0.17567567567567569, 0.9301801801801802, 0.8941441441441441, 0.10810810810810811, 0.06306306306306306, 0.0472972972972973, 0.0518018018018018, 0.04954954954954955, 0.06306306306306306, 0.07882882882882883, 0.10585585585585586, 0.6463963963963963, 0.831081081081081, 0.9031531531531531, 0.9099099099099099, 0.9166666666666666, 0.9121621621621622, 0.9054054054054054, 0.8783783783783784, 0.6576576576576577, 0.6193693693693694, 0.5585585585585585, 0.5630630630630631, 0.34234234234234234, 0.9166666666666666, 0.6126126126126126, 0.12162162162162163, 0.06531531531531531, 0.036036036036036036, 0.033783783783783786, 0.024774774774774775, 0.02252252252252252, 0.02027027027027027, 0.018018018018018018, 0.018018018018018018, 0.015765765765765764, 0.015765765765765764, 0.015765765765765764, 0.015765765765765764, 0.015765765765765764, 0.015765765765765764, 0.018018018018018018, 0.018018018018018018, 0.018018018018018018, 0.018018018018018018, 0.02252252252252252, 0.038288288288288286, 0.04054054054054054, 0.038288288288288286, 0.04054054054054054, 0.27702702702702703, 0.3761261261261261, 0.36036036036036034, 0.8288288288288288, 0.8468468468468469, 0.8806306306306306, 0.8400900900900901, 0.6306306306306306, 0.12387387387387387, 0.09009009009009009, 0.08333333333333333, 0.08558558558558559, 0.09009009009009009, 0.0990990990990991, 0.10585585585585586, 0.1036036036036036, 0.10135135135135136, 0.11486486486486487, 0.11936936936936937, 0.13063063063063063, 0.13288288288288289, 0.13288288288288289, 0.13288288288288289, 0.13513513513513514, 0.1373873873873874, 0.14189189189189189, 0.13963963963963963, 0.1463963963963964, 0.15315315315315314, 0.19369369369369369, 0.2725225225225225, 0.29954954954954954, 0.3130630630630631, 0.32657657657657657, 0.35585585585585583, 0.38738738738738737, 0.40765765765765766, 0.43243243243243246, 0.45495495495495497, 0.6418918918918919, 0.6554054054054054, 0.6576576576576577, 0.6261261261261262, 0.5247747747747747, 0.5292792792792793, 0.536036036036036, 0.5382882882882883, 0.5427927927927928, 0.5427927927927928, 0.545045045045045, 0.5495495495495496, 0.7837837837837838, 0.581081081081081, 0.6351351351351351, 0.6373873873873874, 0.9279279279279279, 0.9301801801801802, 0.9076576576576577, 0.5698198198198198, 0.5698198198198198, 0.5698198198198198, 0.581081081081081, 0.6981981981981982], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Sulfotransfer_1.gap.json b/pfam_gap_rates/Sulfotransfer_1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..81995b1d0b97835ae26b9c3216fe56bc1d2b3435
--- /dev/null
+++ b/pfam_gap_rates/Sulfotransfer_1.gap.json
@@ -0,0 +1 @@
+{"family": "Sulfotransfer_1", "n_seqs": 3274, "length": 397, "gap_rates": [0.744654856444716, 0.47556505803298715, 0.39951130116065975, 0.3323152107513745, 0.30849114233353697, 0.29138668295662795, 0.27764202810018324, 0.2739767868051313, 0.27092241905925474, 0.2693952351863164, 0.26542455711667684, 0.26328649969456325, 0.2565668906536347, 0.25534514355528404, 0.2550397067806964, 0.2544288332315211, 0.25320708613317044, 0.2529016493585828, 0.25320708613317044, 0.25137446548564446, 0.25137446548564446, 0.25137446548564446, 0.2516799022602321, 0.9395235186316433, 0.9413561392791692, 0.9462431276725718, 0.9492974954184484, 0.9480757483200978, 0.9428833231521075, 0.9401343921808186, 0.9379963347587049, 0.2684789248625534, 0.28833231521075137, 0.2889431887599267, 0.2874160048869884, 0.2871105681124007, 0.2858888210140501, 0.275198533903482, 0.8017715332926084, 0.8708002443494197, 0.9474648747709224, 0.9337202199144777, 0.8509468540012217, 0.7397678680513133, 0.38485033598045204, 0.45326817348808796, 0.3759926695174099, 0.32926084300549785, 0.2971899816737935, 0.29108124618204034, 0.2806963958460599, 0.2773365913255956, 0.5479535736102626, 0.5339034819792303, 0.5116065974343311, 0.6890653634697618, 0.36469150885766644, 0.2806963958460599, 0.2727550397067807, 0.2635919364691509, 0.2596212583995113, 0.2672571777642028, 0.26145387904703726, 0.2602321319486866, 0.26450824679291385, 0.44654856444715946, 0.6695174098961515, 0.643860720830788, 0.6514966401954795, 0.6423335369578497, 0.6252290775809407, 0.8149053145998778, 0.6291997556505803, 0.6194257788637751, 0.6056811240073304, 0.5888821014050092, 0.6007941356139279, 0.5940745265729994, 0.9260843005497862, 0.8845448992058644, 0.7376298106291997, 0.7504581551618815, 0.6857055589492975, 0.7935247403787417, 0.8265119120342089, 0.8732437385461209, 0.8805742211362249, 0.888515577275504, 0.8985949908368968, 0.905620036652413, 0.9120342089187539, 0.9156994502138057, 0.9184483811850946, 0.9215027489309713, 0.9251679902260233, 0.9273060476481368, 0.9288332315210751, 0.9309712889431888, 0.9318875992669517, 0.9383017715332926, 0.9407452657299938, 0.9431887599266952, 0.9462431276725718, 0.9480757483200978, 0.9486866218692731, 0.9499083689676237, 0.9480757483200978, 0.9474648747709224, 0.9444105070250458, 0.9413561392791692, 0.9398289554062309, 0.9358582773365913, 0.9312767257177764, 0.9294441050702504, 0.9288332315210751, 0.9260843005497862, 0.9227244960293219, 0.919975565058033, 0.9166157605375688, 0.9135613927916921, 0.9111178985949908, 0.9016493585827734, 0.8930971288943189, 0.8854612095296274, 0.8762981062919976, 0.8585827733659133, 0.7968845448992059, 0.789554062309102, 0.6557727550397068, 0.6209529627367135, 0.5375687232742822, 0.4517409896151497, 0.40714722052535124, 0.373243738546121, 0.3359804520464264, 0.28863775198533903, 0.25595601710445937, 0.24618204031765425, 0.23946243127672573, 0.23671350030543678, 0.23365913255956017, 0.2342700061087355, 0.23488087965791082, 0.23243738546120954, 0.43005497861942577, 0.402871105681124, 0.38179596823457546, 0.36010995723885153, 0.3472816127061698, 0.3442272449602932, 0.34331093463653023, 0.949602932193036, 0.9312767257177764, 0.37813072693952354, 0.5134392180818571, 0.5024434941967013, 0.47800855222968847, 0.465791081246182, 0.4544899205864386, 0.4434941967012828, 0.43952351863164324, 0.4822846670739157, 0.4715943799633476, 0.47739767868051314, 0.48961514966401953, 0.4636530238240684, 0.2028100183262065, 0.1649358582773366, 0.17348808796579107, 0.1533292608430055, 0.14202810018326206, 0.13439218081857054, 0.12675626145387905, 0.12370189370800244, 0.12217470983506414, 0.11973121563836286, 0.1209529627367135, 0.11973121563836286, 0.1194257788637752, 0.11881490531459987, 0.11912034208918754, 0.11973121563836286, 0.1194257788637752, 0.12064752596212584, 0.12064752596212584, 0.12003665241295051, 0.12064752596212584, 0.11973121563836286, 0.12125839951130116, 0.12186927306047649, 0.13897373243738545, 0.1356139279169212, 0.13164324984728162, 0.13653023824068417, 0.7217470983506414, 0.7489309712889431, 0.7978008552229688, 0.8225412339645694, 0.8518631643249848, 0.8766035430665852, 0.9089798411728772, 0.921808185705559, 0.9355528405620037, 0.9468540012217471, 0.9404398289554062, 0.9306658521686011, 0.9150885766646304, 0.8940134392180819, 0.8601099572388515, 0.8365913255956017, 0.8091020158827122, 0.7700061087354918, 0.7357971899816738, 0.707697006719609, 0.1832620647525962, 0.40164935858277334, 0.3591936469150886, 0.33628588882101407, 0.3017715332926084, 0.2849725106902871, 0.2944410507025046, 0.7837507635919365, 0.5888821014050092, 0.32162492364080636, 0.23976786805131337, 0.7828344532681735, 0.8029932803909591, 0.8295662797800856, 0.8634697617593158, 0.9147831398900428, 0.9447159437996335, 0.8814905314599878, 0.8460598656078192, 0.8130726939523518, 0.7944410507025046, 0.7755039706780696, 0.22021991447770312, 0.23091020158827122, 0.23457544288332316, 0.23640806353084912, 0.22327428222357973, 0.2171655467318265, 0.21166768478924863, 0.30421502748930973, 0.8625534514355528, 0.8766035430665852, 0.8955406230910201, 0.9147831398900428, 0.9273060476481368, 0.9416615760537569, 0.9456322541233965, 0.937080024434942, 0.919975565058033, 0.9080635308491143, 0.8799633475870495, 0.8726328649969456, 0.8469761759315821, 0.15149664019547954, 0.13683567501527183, 0.12981062919975564, 0.13133781307269396, 0.129505192425168, 0.12736713500305435, 0.12583995113011606, 0.1224801466096518, 0.12339645693341478, 0.1224801466096518, 0.12186927306047649, 0.12278558338423946, 0.1240073304825901, 0.14691508857666463, 0.13500305436774587, 0.13378130726939524, 0.1325595601710446, 0.7529016493585827, 0.9407452657299938, 0.709529627367135, 0.13317043372021992, 0.129505192425168, 0.13164324984728162, 0.12583995113011606, 0.1163714111178986, 0.1148442272449603, 0.11667684789248625, 0.11453879047037263, 0.11423335369578497, 0.1148442272449603, 0.11545510079413561, 0.11392791692119732, 0.11362248014660965, 0.11270616982284667, 0.1108735491753207, 0.11026267562614539, 0.10812461820403177, 0.11362248014660965, 0.11850946854001222, 0.1178985949908369, 0.11423335369578497, 0.1117898594990837, 0.11209529627367135, 0.11240073304825901, 0.11148442272449603, 0.11148442272449603, 0.11240073304825901, 0.11423335369578497, 0.11453879047037263, 0.11514966401954796, 0.11912034208918754, 0.11881490531459987, 0.11973121563836286, 0.44013439218081857, 0.4367745876603543, 0.8240684178375076, 0.8378130726939523, 0.8405620036652413, 0.8329260843005498, 0.805742211362248, 0.437996334758705, 0.4285277947464875, 0.3656078191814294, 0.23518631643249846, 0.2434331093463653, 0.25076359193646913, 0.29413561392791693, 0.2642028100183262, 0.26542455711667684, 0.26786805131337815, 0.2727550397067807, 0.275198533903482, 0.2797800855222969, 0.28283445326817347, 0.28558338423946245, 0.29291386682956627, 0.2971899816737935, 0.30054978619425776, 0.3020769700671961, 0.30849114233353697, 0.31337813072693954, 0.3164324984728161, 0.3213194868662187, 0.3656078191814294, 0.43646915088576665, 0.4367745876603543, 0.5507025045815516, 0.6169822846670739, 0.6511912034208919, 0.5968234575442883, 0.6860109957238851, 0.7513744654856445, 0.8860720830788027, 0.9364691508857667, 0.9471594379963347, 0.9257788637751986, 0.8454489920586439, 0.7156383628588882, 0.6233964569334148, 0.5702504581551618, 0.527794746487477, 0.36713500305436775, 0.36255345143555284, 0.3536957849725107, 0.3527794746487477, 0.3518631643249847, 0.35155772755039705, 0.35247403787416004, 0.3576664630421503, 0.3610262675626145, 0.36316432498472817, 0.36713500305436775, 0.36713500305436775, 0.907452657299939, 0.9089798411728772, 0.9043982895540623, 0.36866218692730607, 0.371411117898595, 0.3720219914477703, 0.37263286499694565, 0.37263286499694565, 0.37354917532070864, 0.37721441661576055, 0.3775198533903482, 0.3784361637141112, 0.38026878436163714, 0.38179596823457546, 0.3836285888821014, 0.3891264508246793, 0.3952351863164325, 0.4053145998778253, 0.41233964569334147, 0.4276114844227245, 0.4807574832009774, 0.5186316432498472, 0.5445937690897984, 0.5766646304215027, 0.612400733048259, 0.6643249847281613, 0.8356750152718387], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/SurA_N.gap.json b/pfam_gap_rates/SurA_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..dbc8de9e6e9012933c5fb0514b8dfc9fe787f5ff
--- /dev/null
+++ b/pfam_gap_rates/SurA_N.gap.json
@@ -0,0 +1 @@
+{"family": "SurA_N", "n_seqs": 523, "length": 118, "gap_rates": [0.3938814531548757, 0.23709369024856597, 0.17973231357552583, 0.1491395793499044, 0.12810707456978968, 0.12237093690248566, 0.11663479923518165, 0.1089866156787763, 0.10707456978967496, 0.10707456978967496, 0.10707456978967496, 0.10707456978967496, 0.10707456978967496, 0.10707456978967496, 0.10707456978967496, 0.10707456978967496, 0.10707456978967496, 0.10707456978967496, 0.10707456978967496, 0.10707456978967496, 0.1089866156787763, 0.11089866156787763, 0.11089866156787763, 0.11089866156787763, 0.12619502868068833, 0.12810707456978968, 0.15105162523900573, 0.1701720841300191, 0.1682600382409178, 0.17590822179732313, 0.1682600382409178, 0.1682600382409178, 0.15105162523900573, 0.1491395793499044, 0.16443594646271512, 0.1586998087954111, 0.17590822179732313, 0.13957934990439771, 0.14531548757170173, 0.13193116634799235, 0.11089866156787763, 0.0994263862332696, 0.0841300191204589, 0.07265774378585087, 0.06309751434034416, 0.05736137667304015, 0.045889101338432124, 0.0248565965583174, 0.015296367112810707, 0.015296367112810707, 0.015296367112810707, 0.01338432122370937, 0.011472275334608031, 0.009560229445506692, 0.0076481835564053535, 0.0057361376673040155, 0.0038240917782026767, 0.0038240917782026767, 0.0038240917782026767, 0.0038240917782026767, 0.0019120458891013384, 0.0019120458891013384, 0.0019120458891013384, 0.0019120458891013384, 0.0019120458891013384, 0.0019120458891013384, 0.0038240917782026767, 0.0019120458891013384, 0.0019120458891013384, 0.0019120458891013384, 0.0019120458891013384, 0.0019120458891013384, 0.0019120458891013384, 0.0019120458891013384, 0.0019120458891013384, 0.0019120458891013384, 0.0019120458891013384, 0.0057361376673040155, 0.0057361376673040155, 0.009560229445506692, 0.009560229445506692, 0.009560229445506692, 0.01338432122370937, 0.01338432122370937, 0.015296367112810707, 0.011472275334608031, 0.011472275334608031, 0.011472275334608031, 0.011472275334608031, 0.01338432122370937, 0.011472275334608031, 0.011472275334608031, 0.011472275334608031, 0.011472275334608031, 0.01338432122370937, 0.017208413001912046, 0.017208413001912046, 0.015296367112810707, 0.017208413001912046, 0.01338432122370937, 0.011472275334608031, 0.011472275334608031, 0.011472275334608031, 0.011472275334608031, 0.011472275334608031, 0.01338432122370937, 0.017208413001912046, 0.019120458891013385, 0.021032504780114723, 0.030592734225621414, 0.040152963671128104, 0.05162523900573614, 0.11854684512428298, 0.16252390057361377, 0.20267686424474188, 0.23518164435946462, 0.35946462715105165, 0.4894837476099426], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/SurA_N_3.gap.json b/pfam_gap_rates/SurA_N_3.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ec263ae9c35b19a127560f2eb2f722b18f842346
--- /dev/null
+++ b/pfam_gap_rates/SurA_N_3.gap.json
@@ -0,0 +1 @@
+{"family": "SurA_N_3", "n_seqs": 1522, "length": 186, "gap_rates": [0.6655716162943496, 0.6366622864651774, 0.6307490144546649, 0.6241787122207622, 0.607095926412615, 0.5939553219448095, 0.5821287779237845, 0.5670170827858082, 0.5611038107752957, 0.5361366622864652, 0.6044678055190539, 0.5413929040735874, 0.4480946123521682, 0.4211563731931669, 0.3961892247043364, 0.35742444152431013, 0.3324572930354796, 0.30749014454664914, 0.2864651773981603, 0.2720105124835742, 0.2575558475689882, 0.25295663600525625, 0.27135348226018396, 0.2621550591327201, 0.8751642575558476, 0.2371879106438896, 0.2378449408672799, 0.9231274638633377, 0.9375821287779238, 0.911957950065703, 0.29106438896189224, 0.8777923784494087, 0.2621550591327201, 0.24178712220762155, 0.2516425755584757, 0.25098554533508544, 0.24178712220762155, 0.942838370565046, 0.25098554533508544, 0.2378449408672799, 0.2266754270696452, 0.22536136662286466, 0.22733245729303547, 0.2161629434954008, 0.8607095926412615, 0.6813403416557161, 0.21222076215505914, 0.11498028909329829, 0.7930354796320631, 0.8764783180026281, 0.9277266754270697, 0.9494086727989488, 0.9415243101182654, 0.9060446780551905, 0.8475689881734559, 0.7365308804204993, 0.09789750328515112, 0.0900131406044678, 0.0900131406044678, 0.0900131406044678, 0.08869908015768725, 0.08804204993429698, 0.08409986859395532, 0.08409986859395532, 0.08278580814717477, 0.0821287779237845, 0.08081471747700394, 0.0795006570302234, 0.0795006570302234, 0.07884362680683311, 0.07818659658344283, 0.07687253613666228, 0.07621550591327202, 0.07424441524310119, 0.07884362680683311, 0.07818659658344283, 0.16294349540078842, 0.16688567674113008, 0.18528252299605782, 0.20367936925098554, 0.26741130091984233, 0.2542706964520368, 0.2490144546649146, 0.28383705650459923, 0.27989487516425754, 0.42509855453350853, 0.31274638633377133, 0.24244415243101183, 0.2187910643889619, 0.20039421813403416, 0.20105124835742444, 0.1754270696452037, 0.16031537450722733, 0.17805519053876478, 0.18265440210249673, 0.15505913272010513, 0.8226018396846255, 0.9395532194480947, 0.873850197109067, 0.8002628120893561, 0.1504599211563732, 0.09461235216819974, 0.05781865965834428, 0.03350854139290407, 0.019053876478318004, 0.011826544021024968, 0.00985545335085414, 0.009198423127463863, 0.009198423127463863, 0.008541392904073587, 0.008541392904073587, 0.00985545335085414, 0.011826544021024968, 0.011826544021024968, 0.011826544021024968, 0.010512483574244415, 0.00788436268068331, 0.00788436268068331, 0.008541392904073587, 0.00788436268068331, 0.00788436268068331, 0.009198423127463863, 0.009198423127463863, 0.015111695137976347, 0.0164257555847569, 0.01576872536136662, 0.02890932982917214, 0.028252299605781867, 0.023653088042049936, 0.020367936925098553, 0.02102496714848883, 0.02431011826544021, 0.026281208935611037, 0.03153745072273324, 0.03416557161629435, 0.04007884362680683, 0.045992115637319315, 0.9290407358738502, 0.05584756898817345, 0.06307490144546649, 0.07490144546649145, 0.12417871222076216, 0.9080157687253614, 0.37779237844940866, 0.35019710906701706, 0.3015768725361367, 0.7634691195795007, 0.3331143232588699, 0.2352168199737188, 0.1583442838370565, 0.19776609724047306, 0.20302233902759526, 0.9211563731931669, 0.14914586070959265, 0.133377135348226, 0.12089356110381078, 0.1176084099868594, 0.11366622864651774, 0.10709592641261498, 0.10709592641261498, 0.10972404730617609, 0.11235216819973719, 0.11103810775295664, 0.11235216819973719, 0.11235216819973719, 0.11366622864651774, 0.11695137976346912, 0.1202365308804205, 0.12352168199737187, 0.1287779237844941, 0.13009198423127463, 0.1314060446780552, 0.13797634691195795, 0.14191852825229961, 0.14651773981603153, 0.1530880420499343, 0.16951379763469118, 0.17805519053876478, 0.18725361366622864, 0.19579500657030224, 0.20959264126149804, 0.22733245729303547, 0.2647831800262812, 0.3252299605781866, 0.411957950065703, 0.8909329829172142], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/SurE.gap.json b/pfam_gap_rates/SurE.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c9fb637705acdb4603dedda6ece6aaff0da8b6fe
--- /dev/null
+++ b/pfam_gap_rates/SurE.gap.json
@@ -0,0 +1 @@
+{"family": "SurE", "n_seqs": 1613, "length": 240, "gap_rates": [0.15189088654680719, 0.03905765654060756, 0.03595784252944823, 0.029758214507129573, 0.02851828890266584, 0.02851828890266584, 0.02851828890266584, 0.027898326100433975, 0.027898326100433975, 0.02851828890266584, 0.9200247985120893, 0.9330440173589585, 0.9200247985120893, 0.9194048357098574, 0.026038437693738377, 0.026038437693738377, 0.02541847489150651, 0.02541847489150651, 0.026038437693738377, 0.02541847489150651, 0.02417854928704278, 0.02417854928704278, 0.02417854928704278, 0.02417854928704278, 0.022318660880347178, 0.02169869807811531, 0.8747675139491631, 0.33168009919404834, 0.02541847489150651, 0.17110973341599503, 0.07687538747675139, 0.021078735275883446, 0.018598884066955982, 0.017978921264724116, 0.01735895846249225, 0.01735895846249225, 0.01735895846249225, 0.016119032858028518, 0.016119032858028518, 0.015499070055796652, 0.01425914445133292, 0.01425914445133292, 0.01425914445133292, 0.013019218846869188, 0.013019218846869188, 0.013019218846869188, 0.013019218846869188, 0.013639181649101054, 0.01425914445133292, 0.038437693738375696, 0.02727836329820211, 0.019838809671419714, 0.01735895846249225, 0.016119032858028518, 0.016119032858028518, 0.02417854928704278, 0.08059516429014259, 0.08803471791692498, 0.930564166150031, 0.01425914445133292, 0.017978921264724116, 0.02541847489150651, 0.38375697458152513, 0.40545567265964044, 0.6615003099814011, 0.7892126472411656, 0.8208307501549907, 0.8257904525728457, 0.8319900805951643, 0.8394296342219467, 0.8648481091134532, 0.9225046497210168, 0.9435833849969002, 0.9355238685678859, 0.8784872907625543, 0.8499690018598884, 0.8357098574085555, 0.828890266584005, 0.8251704897706138, 0.8090514569125853, 0.7383756974581525, 0.513949163050217, 0.3967761934283943, 0.04339739615623062, 0.019838809671419714, 0.017978921264724116, 0.012399256044637322, 0.012399256044637322, 0.011159330440173589, 0.8908865468071916, 0.009299442033477991, 0.009299442033477991, 0.009299442033477991, 0.008679479231246125, 0.008679479231246125, 0.008679479231246125, 0.008679479231246125, 0.008679479231246125, 0.008679479231246125, 0.008679479231246125, 0.008679479231246125, 0.008679479231246125, 0.030998140111593304, 0.009919404835709857, 0.009299442033477991, 0.011159330440173589, 0.03037817730936144, 0.047117172969621826, 0.0328580285182889, 0.8220706757594545, 0.8964662120272784, 0.9367637941723497, 0.8846869187848729, 0.5951642901425914, 0.008679479231246125, 0.9342839429634222, 0.008679479231246125, 0.008059516429014259, 0.007439553626782393, 0.007439553626782393, 0.007439553626782393, 0.008059516429014259, 0.008679479231246125, 0.008679479231246125, 0.008679479231246125, 0.009299442033477991, 0.009919404835709857, 0.009919404835709857, 0.011159330440173589, 0.010539367637941723, 0.011159330440173589, 0.011779293242405457, 0.010539367637941723, 0.8468691878487291, 0.008059516429014259, 0.008059516429014259, 0.009299442033477991, 0.009299442033477991, 0.009299442033477991, 0.008679479231246125, 0.008679479231246125, 0.008679479231246125, 0.009299442033477991, 0.008679479231246125, 0.008679479231246125, 0.008679479231246125, 0.008059516429014259, 0.008679479231246125, 0.008059516429014259, 0.008059516429014259, 0.008059516429014259, 0.008059516429014259, 0.008059516429014259, 0.008059516429014259, 0.008059516429014259, 0.008059516429014259, 0.008059516429014259, 0.008679479231246125, 0.008679479231246125, 0.41289522628642283, 0.5988840669559826, 0.8109113453192809, 0.8592684438933664, 0.9014259144451333, 0.9442033477991321, 0.9163050216986981, 0.8766274023558587, 0.8419094854308742, 0.7327960322380657, 0.546187228766274, 0.3415995040297582, 0.010539367637941723, 0.2864228146311221, 0.11903285802851829, 0.11097334159950403, 0.069435833849969, 0.05517668939863608, 0.03161810291382517, 0.02851828890266584, 0.023558586484810913, 0.02541847489150651, 0.019838809671419714, 0.019218846869187848, 0.018598884066955982, 0.019838809671419714, 0.019838809671419714, 0.019838809671419714, 0.019218846869187848, 0.03037817730936144, 0.9454432734035958, 0.9442033477991321, 0.034097954122752634, 0.07191568505889646, 0.07191568505889646, 0.02851828890266584, 0.03781773093614383, 0.04215747055176689, 0.05579665220086795, 0.13205207687538748, 0.712957222566646, 0.7941723496590205, 0.898326100433974, 0.930564166150031, 0.9156850588964662, 0.879727216367018, 0.7693738375697459, 0.6360818350898946, 0.08369497830130192, 0.047117172969621826, 0.041537507749535026, 0.03781773093614383, 0.021078735275883446, 0.021078735275883446, 0.021078735275883446, 0.021078735275883446, 0.02169869807811531, 0.022318660880347178, 0.022938623682579044, 0.9435833849969002, 0.06695598264104154, 0.1717296962182269, 0.15995040297582144, 0.11097334159950403, 0.10229386236825791, 0.11593304401735896, 0.15623062616243025, 0.14011159330440173, 0.1959082455052697, 0.16862988220706757, 0.1717296962182269, 0.16491010539367637, 0.1680099194048357, 0.17482951022938623, 0.18412895226286422, 0.20582765034097955, 0.23310601363918165, 0.2634841909485431, 0.3230006199628022, 0.42901425914445135, 0.7135771853688778], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/SusD-like_3.gap.json b/pfam_gap_rates/SusD-like_3.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..17a0262f61eb03d276a4abd9daea59b935615b4b
--- /dev/null
+++ b/pfam_gap_rates/SusD-like_3.gap.json
@@ -0,0 +1 @@
+{"family": "SusD-like_3", "n_seqs": 3233, "length": 273, "gap_rates": [0.732137333745747, 0.6356325394370553, 0.5787194556139809, 0.5654191153727188, 0.5607794618001856, 0.5644911846582122, 0.5539746365604702, 0.5499536034642747, 0.5443860191772347, 0.546551190844417, 0.5419115372718837, 0.8790596968759666, 0.6857407980204144, 0.5400556758428704, 0.5289205072687906, 0.5115991339313332, 0.8453448809155583, 0.9313331271265078, 0.9137024435508815, 0.7296628518403959, 0.49211258892669346, 0.8292607485307764, 0.4639653572533251, 0.4580884627281163, 0.4587070832044541, 0.4466439839158676, 0.44200433034333436, 0.43643674605629446, 0.43241571296009895, 0.4228270955768636, 0.41818744200433033, 0.41478502938447265, 0.41076399628827714, 0.4175688215279926, 0.4073615836684194, 0.41602227033714817, 0.411073306526446, 0.8020414475719146, 0.8787503866377977, 0.9195793380760903, 0.9415403649860811, 0.9031858954531395, 0.8502938447262605, 0.7596659449427776, 0.4212805443860192, 0.41787813176616145, 0.40086606866687285, 0.4157129600989793, 0.3860191772347665, 0.37488400866068666, 0.36591401175378907, 0.9492731209403031, 0.3758119393751933, 0.3560160841323848, 0.3829260748530776, 0.3513764305598515, 0.3294154036498608, 0.3244664398391587, 0.3742653881843489, 0.34519022579647385, 0.9325703680791835, 0.30621713578719456, 0.2901330034024126, 0.2814723167336839, 0.2752861119703062, 0.9440148468914321, 0.2703371481596041, 0.26662542530157746, 0.3108567893597278, 0.3052892050726879, 0.9341169192700278, 0.9038045159294773, 0.25920197958552427, 0.2347664707701825, 0.22270337148159605, 0.2140426848128673, 0.2100216517166718, 0.2066192390968141, 0.20197958552428086, 0.19888648314259202, 0.2827095576863594, 0.2100216517166718, 0.785029384472626, 0.883390040210331, 0.931023816888339, 0.8437983297247139, 0.7191463037426539, 0.15805753170429943, 0.14568512217754406, 0.13176616145994433, 0.12124961336220229, 0.12001237240952675, 0.93906588308073, 0.880606248066811, 0.13609650479430868, 0.9133931333127127, 0.9489638107021342, 0.8932879678317353, 0.11784720074234457, 0.08258583359109187, 0.06248066811011444, 0.05196412001237241, 0.04763377667800804, 0.04392205381998144, 0.05474791215589236, 0.040828951438292606, 0.041447571914630374, 0.05381998144138571, 0.04701515620167027, 0.02567274976801732, 0.021651716671821836, 0.015156201670275286, 0.009897927621404269, 0.008969996906897619, 0.008660686668728735, 0.008351376430559852, 0.007423445716053201, 0.007423445716053201, 0.006804825239715435, 0.006495515001546551, 0.006495515001546551, 0.006495515001546551, 0.03742653881843489, 0.05010825858335911, 0.47943086916176925, 0.851531085678936, 0.9375193318898856, 0.7701824930405197, 0.2530157748221466, 0.04268481286730591, 0.10269099907206929, 0.0949582431178472, 0.09372100216517167, 0.08320445406742963, 0.018558614290133002, 0.7701824930405197, 0.8450355706773894, 0.9133931333127127, 0.9418496752242499, 0.8836993504484999, 0.8125579956696567, 0.695020105165481, 0.009897927621404269, 0.009588617383235385, 0.008042066192390968, 0.0049489638107021346, 0.004330343334364367, 0.0034024126198577173, 0.0037117228580266005, 0.0046396535725332505, 0.0046396535725332505, 0.0046396535725332505, 0.004021033096195484, 0.003093102381688834, 0.0034024126198577173, 0.0034024126198577173, 0.003093102381688834, 0.003093102381688834, 0.003093102381688834, 0.003093102381688834, 0.003093102381688834, 0.0027837921435199505, 0.0024744819053510673, 0.0027837921435199505, 0.0027837921435199505, 0.0027837921435199505, 0.0027837921435199505, 0.8728734921125889, 0.8747293535416022, 0.8855552118775132, 0.8979276214042685, 0.912465202598206, 0.9483451902257964, 0.9322610578410145, 0.9016393442622951, 0.8908134859263842, 0.883080729972162, 0.8738014228270956, 0.8703990102072379, 0.0034024126198577173, 0.10300030931023817, 0.004021033096195484, 0.003093102381688834, 0.0034024126198577173, 0.005258274048871018, 0.8731828023507578, 0.9044231364058151, 0.8240024744819053, 0.03309619548407052, 0.02010516548097742, 0.018558614290133002, 0.6767708011135168, 0.8274048871017631, 0.9007114135477884, 0.9375193318898856, 0.9471079492731209, 0.9239096814104547, 0.8824621094958243, 0.7525518094648933, 0.636560470151562, 0.04794308691617693, 0.9415403649860811, 0.013300340241261985, 0.7296628518403959, 0.846272811630065, 0.9118465821218682, 0.9381379523662233, 0.9452520878441076, 0.9480358799876276, 0.9418496752242499, 0.9297865759356635, 0.8874110733065265, 0.7955459325703681, 0.6832663161150634, 0.011135168574079802, 0.011444478812248686, 0.012681719764924219, 0.9458707083204454, 0.010825858335910918, 0.011753789050417568, 0.011444478812248686, 0.01453758119393752, 0.01453758119393752, 0.013918960717599753, 0.012063099288586452, 0.012372409526755336, 0.012372409526755336, 0.012681719764924219, 0.012991030003093103, 0.012372409526755336, 0.01360965047943087, 0.013918960717599753, 0.01453758119393752, 0.015156201670275286, 0.017939993813795237, 0.02103309619548407, 0.022270337148159604, 0.023507578100835137, 0.02567274976801732, 0.029384472626043923, 0.03216826476956387, 0.03433343643674606, 0.039591710485617077, 0.04361274358181256, 0.04670584596350139, 0.2502319826786267, 0.331580575317043, 0.7649242189916486, 0.912465202598206, 0.9486545004639654, 0.9381379523662233, 0.8700896999690689, 0.6857407980204144, 0.24064336529539126, 0.15341787813176616, 0.09248376121249613, 0.08103928240024745, 0.0801113516857408, 0.07949273120940303, 0.09000927930714507, 0.08506031549644293, 0.08475100525827405, 0.0838230745437674, 0.08629755644911846, 0.08846272811630065, 0.09000927930714507, 0.09341169192700279, 0.09805134549953604, 0.10578410145375812, 0.12001237240952675, 0.13331271265078873, 0.1880606248066811, 0.28240024744819053], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/SusF_SusE.gap.json b/pfam_gap_rates/SusF_SusE.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..33264d37827f13bedb3fbe1e65af65a675972f38
--- /dev/null
+++ b/pfam_gap_rates/SusF_SusE.gap.json
@@ -0,0 +1 @@
+{"family": "SusF_SusE", "n_seqs": 172, "length": 312, "gap_rates": [0.25, 0.16279069767441862, 0.1511627906976744, 0.13372093023255813, 0.12209302325581395, 0.11627906976744186, 0.2441860465116279, 0.14534883720930233, 0.06395348837209303, 0.06395348837209303, 0.05813953488372093, 0.9244186046511628, 0.10465116279069768, 0.0872093023255814, 0.1511627906976744, 0.11046511627906977, 0.046511627906976744, 0.046511627906976744, 0.5406976744186046, 0.872093023255814, 0.9186046511627907, 0.7732558139534884, 0.1744186046511628, 0.38953488372093026, 0.3081395348837209, 0.31976744186046513, 0.21511627906976744, 0.11627906976744186, 0.0872093023255814, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.03488372093023256, 0.0, 0.8604651162790697, 0.936046511627907, 0.9127906976744186, 0.6511627906976745, 0.0, 0.0, 0.0, 0.0, 0.01744186046511628, 0.011627906976744186, 0.005813953488372093, 0.005813953488372093, 0.011627906976744186, 0.01744186046511628, 0.14534883720930233, 0.4883720930232558, 0.622093023255814, 0.6976744186046512, 0.813953488372093, 0.8895348837209303, 0.9186046511627907, 0.8488372093023255, 0.7209302325581395, 0.6918604651162791, 0.5523255813953488, 0.4418604651162791, 0.05232558139534884, 0.28488372093023256, 0.27325581395348836, 0.25, 0.25, 0.22093023255813954, 0.20930232558139536, 0.19767441860465115, 0.20348837209302326, 0.11046511627906977, 0.47674418604651164, 0.6104651162790697, 0.7325581395348837, 0.8488372093023255, 0.9127906976744186, 0.9476744186046512, 0.936046511627907, 0.8837209302325582, 0.8023255813953488, 0.7093023255813954, 0.5465116279069767, 0.4127906976744186, 0.1511627906976744, 0.877906976744186, 0.5755813953488372, 0.2616279069767442, 0.26744186046511625, 0.05813953488372093, 0.37209302325581395, 0.6918604651162791, 0.8430232558139535, 0.9418604651162791, 0.75, 0.5232558139534884, 0.22674418604651161, 0.05813953488372093, 0.05813953488372093, 0.05813953488372093, 0.06395348837209303, 0.06976744186046512, 0.05813953488372093, 0.0755813953488372, 0.10465116279069768, 0.05813953488372093, 0.05232558139534884, 0.05232558139534884, 0.05232558139534884, 0.05232558139534884, 0.05232558139534884, 0.05813953488372093, 0.05813953488372093, 0.38953488372093026, 0.46511627906976744, 0.9302325581395349, 0.936046511627907, 0.47674418604651164, 0.4011627906976744, 0.36046511627906974, 0.13953488372093023, 0.27325581395348836, 0.3023255813953488, 0.3430232558139535, 0.38372093023255816, 0.45930232558139533, 0.47674418604651164, 0.5116279069767442, 0.5116279069767442, 0.5, 0.5116279069767442, 0.5116279069767442, 0.5348837209302325, 0.5755813953488372, 0.5930232558139535, 0.6337209302325582, 0.6453488372093024, 0.6453488372093024, 0.6511627906976745, 0.6453488372093024, 0.6569767441860465, 0.6569767441860465, 0.6686046511627907, 0.6395348837209303, 0.7325581395348837, 0.7441860465116279, 0.7906976744186046, 0.7906976744186046, 0.7965116279069767, 0.8197674418604651, 0.8197674418604651, 0.8313953488372093, 0.8372093023255814, 0.8430232558139535, 0.8488372093023255, 0.8488372093023255, 0.8604651162790697, 0.877906976744186, 0.8895348837209303, 0.8895348837209303, 0.8895348837209303, 0.8895348837209303, 0.8895348837209303, 0.8953488372093024, 0.8953488372093024, 0.9244186046511628, 0.9476744186046512, 0.9302325581395349, 0.9011627906976745, 0.8953488372093024, 0.8953488372093024, 0.8895348837209303, 0.8895348837209303, 0.8895348837209303, 0.8895348837209303, 0.8837209302325582, 0.872093023255814, 0.8488372093023255, 0.8488372093023255, 0.8430232558139535, 0.8372093023255814, 0.8313953488372093, 0.8255813953488372, 0.8197674418604651, 0.8023255813953488, 0.7965116279069767, 0.7906976744186046, 0.7732558139534884, 0.7325581395348837, 0.7267441860465116, 0.6337209302325582, 0.6627906976744186, 0.8430232558139535, 0.8488372093023255, 0.8488372093023255, 0.8837209302325582, 0.9127906976744186, 0.9186046511627907, 0.9186046511627907, 0.9244186046511628, 0.9302325581395349, 0.9302325581395349, 0.9302325581395349, 0.9302325581395349, 0.9302325581395349, 0.9302325581395349, 0.9302325581395349, 0.9244186046511628, 0.9186046511627907, 0.9186046511627907, 0.9011627906976745, 0.8546511627906976, 0.8488372093023255, 0.8488372093023255, 0.8372093023255814, 0.7906976744186046, 0.8372093023255814, 0.8197674418604651, 0.813953488372093, 0.813953488372093, 0.8197674418604651, 0.8197674418604651, 0.8197674418604651, 0.8081395348837209, 0.813953488372093, 0.7151162790697675, 0.7616279069767442, 0.8023255813953488, 0.8081395348837209, 0.813953488372093, 0.8372093023255814, 0.8546511627906976, 0.872093023255814, 0.8953488372093024, 0.9011627906976745, 0.9127906976744186, 0.9302325581395349, 0.936046511627907, 0.9476744186046512, 0.9476744186046512, 0.936046511627907, 0.9244186046511628, 0.9069767441860465, 0.9011627906976745, 0.877906976744186, 0.8546511627906976, 0.8430232558139535, 0.8255813953488372, 0.8081395348837209, 0.8081395348837209, 0.7906976744186046, 0.75, 0.7093023255813954, 0.7267441860465116, 0.7209302325581395, 0.6453488372093024, 0.7093023255813954, 0.7151162790697675, 0.7209302325581395, 0.7441860465116279, 0.75, 0.7558139534883721, 0.7558139534883721, 0.8023255813953488, 0.8197674418604651, 0.8372093023255814, 0.8953488372093024, 0.9302325581395349, 0.936046511627907, 0.9476744186046512, 0.9418604651162791, 0.936046511627907, 0.9186046511627907, 0.8662790697674418, 0.8255813953488372, 0.8081395348837209, 0.7732558139534884, 0.7558139534883721, 0.75, 0.75, 0.7209302325581395, 0.7151162790697675, 0.7151162790697675, 0.7093023255813954, 0.6453488372093024, 0.6569767441860465, 0.7325581395348837, 0.6686046511627907, 0.6453488372093024, 0.6453488372093024, 0.6453488372093024, 0.6627906976744186, 0.8372093023255814, 0.6569767441860465, 0.6453488372093024, 0.6453488372093024, 0.6453488372093024, 0.6453488372093024, 0.6453488372093024, 0.6569767441860465, 0.6569767441860465, 0.6569767441860465, 0.6569767441860465, 0.6627906976744186, 0.6802325581395349, 0.8081395348837209], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Swi3.gap.json b/pfam_gap_rates/Swi3.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..01c435e288609b023dc31ffc385943aed936a437
--- /dev/null
+++ b/pfam_gap_rates/Swi3.gap.json
@@ -0,0 +1 @@
+{"family": "Swi3", "n_seqs": 272, "length": 97, "gap_rates": [0.2757352941176471, 0.13970588235294118, 0.11397058823529412, 0.08088235294117647, 0.0661764705882353, 0.0625, 0.058823529411764705, 0.058823529411764705, 0.058823529411764705, 0.058823529411764705, 0.058823529411764705, 0.9044117647058824, 0.058823529411764705, 0.058823529411764705, 0.058823529411764705, 0.058823529411764705, 0.058823529411764705, 0.058823529411764705, 0.05514705882352941, 0.05514705882352941, 0.05514705882352941, 0.6617647058823529, 0.05514705882352941, 0.051470588235294115, 0.04779411764705882, 0.04411764705882353, 0.04411764705882353, 0.0625, 0.05514705882352941, 0.9044117647058824, 0.04411764705882353, 0.051470588235294115, 0.9375, 0.9375, 0.9411764705882353, 0.9448529411764706, 0.9485294117647058, 0.9485294117647058, 0.9485294117647058, 0.9485294117647058, 0.9411764705882353, 0.9375, 0.9375, 0.9375, 0.03308823529411765, 0.022058823529411766, 0.03308823529411765, 0.04044117647058824, 0.04044117647058824, 0.04044117647058824, 0.04044117647058824, 0.04044117647058824, 0.04044117647058824, 0.04044117647058824, 0.04044117647058824, 0.04044117647058824, 0.03676470588235294, 0.03676470588235294, 0.01838235294117647, 0.01838235294117647, 0.01838235294117647, 0.01838235294117647, 0.01838235294117647, 0.014705882352941176, 0.014705882352941176, 0.014705882352941176, 0.025735294117647058, 0.014705882352941176, 0.014705882352941176, 0.014705882352941176, 0.014705882352941176, 0.014705882352941176, 0.014705882352941176, 0.014705882352941176, 0.014705882352941176, 0.014705882352941176, 0.01838235294117647, 0.01838235294117647, 0.022058823529411766, 0.022058823529411766, 0.029411764705882353, 0.03308823529411765, 0.03308823529411765, 0.03308823529411765, 0.03308823529411765, 0.03676470588235294, 0.04044117647058824, 0.04411764705882353, 0.051470588235294115, 0.0625, 0.07720588235294118, 0.08088235294117647, 0.08455882352941177, 0.09191176470588236, 0.1213235294117647, 0.1948529411764706, 0.5367647058823529], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Swi5.gap.json b/pfam_gap_rates/Swi5.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..3f4f3218d87c37fe33a5d57a8b7ae94c841ebd33
--- /dev/null
+++ b/pfam_gap_rates/Swi5.gap.json
@@ -0,0 +1 @@
+{"family": "Swi5", "n_seqs": 148, "length": 89, "gap_rates": [0.9459459459459459, 0.7162162162162162, 0.6013513513513513, 0.5540540540540541, 0.5202702702702703, 0.4864864864864865, 0.42567567567567566, 0.3918918918918919, 0.3310810810810811, 0.2635135135135135, 0.24324324324324326, 0.22297297297297297, 0.20270270270270271, 0.18243243243243243, 0.14864864864864866, 0.14864864864864866, 0.14864864864864866, 0.12837837837837837, 0.12162162162162163, 0.12162162162162163, 0.11486486486486487, 0.11486486486486487, 0.10810810810810811, 0.10810810810810811, 0.0945945945945946, 0.10135135135135136, 0.10810810810810811, 0.31756756756756754, 0.39864864864864863, 0.39864864864864863, 0.7837837837837838, 0.8513513513513513, 0.9121621621621622, 0.9459459459459459, 0.9121621621621622, 0.8851351351351351, 0.8175675675675675, 0.6081081081081081, 0.05405405405405406, 0.033783783783783786, 0.033783783783783786, 0.013513513513513514, 0.013513513513513514, 0.006756756756756757, 0.006756756756756757, 0.0, 0.0, 0.006756756756756757, 0.006756756756756757, 0.006756756756756757, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.006756756756756757, 0.013513513513513514, 0.02702702702702703, 0.02702702702702703, 0.02702702702702703, 0.02702702702702703, 0.033783783783783786, 0.033783783783783786, 0.060810810810810814, 0.06756756756756757, 0.08108108108108109, 0.08108108108108109, 0.08108108108108109, 0.08108108108108109, 0.08783783783783784, 0.08783783783783784, 0.08783783783783784, 0.08783783783783784, 0.0945945945945946, 0.0945945945945946, 0.0945945945945946, 0.9324324324324325, 0.9324324324324325, 0.0945945945945946, 0.0945945945945946, 0.0945945945945946, 0.10810810810810811, 0.19594594594594594, 0.581081081081081, 0.918918918918919], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Symplekin_C.gap.json b/pfam_gap_rates/Symplekin_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..0a0fc7b2998d4d6de567a763790159ac8ff033f9
--- /dev/null
+++ b/pfam_gap_rates/Symplekin_C.gap.json
@@ -0,0 +1 @@
+{"family": "Symplekin_C", "n_seqs": 244, "length": 220, "gap_rates": [0.29508196721311475, 0.20081967213114754, 0.18032786885245902, 0.16393442622950818, 0.1598360655737705, 0.1557377049180328, 0.1557377049180328, 0.15163934426229508, 0.15163934426229508, 0.15163934426229508, 0.15163934426229508, 0.15163934426229508, 0.15163934426229508, 0.14344262295081966, 0.14344262295081966, 0.14344262295081966, 0.14344262295081966, 0.13934426229508196, 0.13934426229508196, 0.13934426229508196, 0.13934426229508196, 0.13934426229508196, 0.13934426229508196, 0.13934426229508196, 0.13934426229508196, 0.13934426229508196, 0.13934426229508196, 0.7090163934426229, 0.819672131147541, 0.8319672131147541, 0.819672131147541, 0.8155737704918032, 0.6680327868852459, 0.13524590163934427, 0.13524590163934427, 0.13524590163934427, 0.13524590163934427, 0.13524590163934427, 0.13524590163934427, 0.13524590163934427, 0.13524590163934427, 0.13524590163934427, 0.13934426229508196, 0.13524590163934427, 0.13524590163934427, 0.13524590163934427, 0.13524590163934427, 0.14344262295081966, 0.14344262295081966, 0.14344262295081966, 0.7540983606557377, 0.7909836065573771, 0.8032786885245902, 0.9262295081967213, 0.9467213114754098, 0.9467213114754098, 0.9467213114754098, 0.9426229508196722, 0.8237704918032787, 0.7991803278688525, 0.7704918032786885, 0.75, 0.7213114754098361, 0.6926229508196722, 0.6188524590163934, 0.5819672131147541, 0.4713114754098361, 0.44672131147540983, 0.25, 0.23770491803278687, 0.20081967213114754, 0.15163934426229508, 0.13114754098360656, 0.11475409836065574, 0.11065573770491803, 0.10655737704918032, 0.10655737704918032, 0.10655737704918032, 0.10245901639344263, 0.09836065573770492, 0.09836065573770492, 0.10245901639344263, 0.10245901639344263, 0.10245901639344263, 0.10245901639344263, 0.10245901639344263, 0.09836065573770492, 0.9344262295081968, 0.8442622950819673, 0.569672131147541, 0.5163934426229508, 0.29918032786885246, 0.14344262295081966, 0.12295081967213115, 0.11065573770491803, 0.0942622950819672, 0.09016393442622951, 0.13114754098360656, 0.12704918032786885, 0.0778688524590164, 0.07377049180327869, 0.06967213114754098, 0.06557377049180328, 0.06557377049180328, 0.06967213114754098, 0.06557377049180328, 0.06147540983606557, 0.06147540983606557, 0.06147540983606557, 0.13934426229508196, 0.0778688524590164, 0.06557377049180328, 0.9221311475409836, 0.9385245901639344, 0.9467213114754098, 0.9385245901639344, 0.9180327868852459, 0.05327868852459016, 0.05327868852459016, 0.05327868852459016, 0.05327868852459016, 0.04918032786885246, 0.04918032786885246, 0.04918032786885246, 0.05327868852459016, 0.04918032786885246, 0.04918032786885246, 0.05327868852459016, 0.04918032786885246, 0.05327868852459016, 0.05737704918032787, 0.05327868852459016, 0.045081967213114756, 0.045081967213114756, 0.930327868852459, 0.8852459016393442, 0.045081967213114756, 0.040983606557377046, 0.040983606557377046, 0.040983606557377046, 0.036885245901639344, 0.036885245901639344, 0.036885245901639344, 0.03278688524590164, 0.03278688524590164, 0.03278688524590164, 0.03278688524590164, 0.036885245901639344, 0.045081967213114756, 0.04918032786885246, 0.04918032786885246, 0.05327868852459016, 0.05327868852459016, 0.05327868852459016, 0.05327868852459016, 0.05327868852459016, 0.05327868852459016, 0.05327868852459016, 0.05327868852459016, 0.04918032786885246, 0.04918032786885246, 0.7131147540983607, 0.045081967213114756, 0.040983606557377046, 0.040983606557377046, 0.040983606557377046, 0.040983606557377046, 0.040983606557377046, 0.045081967213114756, 0.045081967213114756, 0.045081967213114756, 0.04918032786885246, 0.04918032786885246, 0.05737704918032787, 0.06967213114754098, 0.06557377049180328, 0.06557377049180328, 0.8360655737704918, 0.06967213114754098, 0.06967213114754098, 0.06967213114754098, 0.06967213114754098, 0.06967213114754098, 0.06967213114754098, 0.06967213114754098, 0.06967213114754098, 0.06967213114754098, 0.06967213114754098, 0.06967213114754098, 0.06557377049180328, 0.9221311475409836, 0.9221311475409836, 0.9221311475409836, 0.9221311475409836, 0.06967213114754098, 0.0778688524590164, 0.0860655737704918, 0.08196721311475409, 0.0860655737704918, 0.08196721311475409, 0.08196721311475409, 0.08196721311475409, 0.08196721311475409, 0.08196721311475409, 0.08196721311475409, 0.9221311475409836, 0.08196721311475409, 0.0860655737704918, 0.0942622950819672, 0.0942622950819672, 0.0942622950819672, 0.0942622950819672, 0.09836065573770492, 0.09836065573770492, 0.10245901639344263, 0.10655737704918032, 0.11885245901639344, 0.18442622950819673, 0.4262295081967213, 0.9221311475409836], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/T2SSL.gap.json b/pfam_gap_rates/T2SSL.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e6787db76a283588fb8118a1a108db825d8928c4
--- /dev/null
+++ b/pfam_gap_rates/T2SSL.gap.json
@@ -0,0 +1 @@
+{"family": "T2SSL", "n_seqs": 219, "length": 287, "gap_rates": [0.7488584474885844, 0.7168949771689498, 0.7123287671232876, 0.7077625570776256, 0.7031963470319634, 0.6986301369863014, 0.7031963470319634, 0.6986301369863014, 0.684931506849315, 0.684931506849315, 0.6621004566210046, 0.6529680365296804, 0.6529680365296804, 0.6484018264840182, 0.634703196347032, 0.634703196347032, 0.634703196347032, 0.6712328767123288, 0.6575342465753424, 0.6301369863013698, 0.6301369863013698, 0.6210045662100456, 0.6118721461187214, 0.6027397260273972, 0.6164383561643836, 0.6027397260273972, 0.5707762557077626, 0.5388127853881278, 0.54337899543379, 0.9452054794520548, 0.547945205479452, 0.4840182648401826, 0.4703196347031963, 0.4429223744292237, 0.4155251141552511, 0.4063926940639269, 0.3926940639269406, 0.3881278538812785, 0.3835616438356164, 0.3470319634703196, 0.3287671232876712, 0.3059360730593607, 0.3470319634703196, 0.3059360730593607, 0.2465753424657534, 0.2100456621004566, 0.2876712328767123, 0.1506849315068493, 0.1004566210045662, 0.0867579908675799, 0.0684931506849315, 0.0593607305936073, 0.0547945205479452, 0.0410958904109589, 0.0365296803652968, 0.0319634703196347, 0.0319634703196347, 0.0319634703196347, 0.0273972602739726, 0.0228310502283105, 0.0182648401826484, 0.0182648401826484, 0.0182648401826484, 0.0182648401826484, 0.0182648401826484, 0.0273972602739726, 0.0182648401826484, 0.0182648401826484, 0.0182648401826484, 0.0182648401826484, 0.0136986301369863, 0.0136986301369863, 0.0182648401826484, 0.0136986301369863, 0.0136986301369863, 0.0091324200913242, 0.0136986301369863, 0.0136986301369863, 0.0136986301369863, 0.0091324200913242, 0.0091324200913242, 0.0091324200913242, 0.0091324200913242, 0.0091324200913242, 0.0091324200913242, 0.0091324200913242, 0.0091324200913242, 0.0091324200913242, 0.0136986301369863, 0.0136986301369863, 0.0091324200913242, 0.0045662100456621, 0.0, 0.0045662100456621, 0.0, 0.0, 0.0, 0.0, 0.821917808219178, 0.91324200913242, 0.9497716894977168, 0.8949771689497716, 0.771689497716895, 0.0091324200913242, 0.0045662100456621, 0.0045662100456621, 0.0045662100456621, 0.0, 0.91324200913242, 0.6575342465753424, 0.0045662100456621, 0.0, 0.0, 0.0, 0.0045662100456621, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0045662100456621, 0.0091324200913242, 0.0136986301369863, 0.0091324200913242, 0.0045662100456621, 0.0091324200913242, 0.0045662100456621, 0.0, 0.0045662100456621, 0.0136986301369863, 0.0136986301369863, 0.0091324200913242, 0.0091324200913242, 0.0045662100456621, 0.0045662100456621, 0.0045662100456621, 0.0182648401826484, 0.0182648401826484, 0.0228310502283105, 0.045662100456621, 0.0684931506849315, 0.1187214611872146, 0.1232876712328767, 0.1050228310502283, 0.2100456621004566, 0.8949771689497716, 0.776255707762557, 0.1780821917808219, 0.1735159817351598, 0.1506849315068493, 0.136986301369863, 0.1415525114155251, 0.1324200913242009, 0.1461187214611872, 0.1461187214611872, 0.1689497716894977, 0.1643835616438356, 0.1598173515981735, 0.1415525114155251, 0.8995433789954338, 0.908675799086758, 0.9223744292237442, 0.9315068493150684, 0.9360730593607306, 0.9360730593607306, 0.9497716894977168, 0.9497716894977168, 0.9497716894977168, 0.9497716894977168, 0.9497716894977168, 0.9497716894977168, 0.9497716894977168, 0.9497716894977168, 0.9497716894977168, 0.9497716894977168, 0.9497716894977168, 0.9497716894977168, 0.9360730593607306, 0.9360730593607306, 0.9223744292237442, 0.9178082191780822, 0.8995433789954338, 0.8858447488584474, 0.1461187214611872, 0.1506849315068493, 0.1598173515981735, 0.1689497716894977, 0.1689497716894977, 0.1735159817351598, 0.1689497716894977, 0.182648401826484, 0.1917808219178082, 0.2054794520547945, 0.2100456621004566, 0.2146118721461187, 0.2191780821917808, 0.3287671232876712, 0.3013698630136986, 0.2511415525114155, 0.2557077625570776, 0.2557077625570776, 0.2602739726027397, 0.2648401826484018, 0.2694063926940639, 0.319634703196347, 0.3150684931506849, 0.3242009132420091, 0.3105022831050228, 0.3150684931506849, 0.3105022831050228, 0.3287671232876712, 0.3378995433789954, 0.3287671232876712, 0.3835616438356164, 0.7671232876712328, 0.8721461187214612, 0.9223744292237442, 0.9497716894977168, 0.91324200913242, 0.8127853881278538, 0.6894977168949772, 0.4840182648401826, 0.3789954337899543, 0.3744292237442922, 0.365296803652968, 0.3698630136986301, 0.3744292237442922, 0.3698630136986301, 0.3789954337899543, 0.3835616438356164, 0.3926940639269406, 0.3972602739726027, 0.4063926940639269, 0.4155251141552511, 0.4292237442922374, 0.5707762557077626, 0.5525114155251142, 0.5616438356164384, 0.6986301369863014, 0.771689497716895, 0.8356164383561644, 0.8767123287671232, 0.908675799086758, 0.9497716894977168, 0.9269406392694064, 0.8858447488584474, 0.8538812785388128, 0.821917808219178, 0.730593607305936, 0.6894977168949772, 0.4840182648401826, 0.4292237442922374, 0.4200913242009132, 0.4383561643835616, 0.4292237442922374, 0.4337899543378995, 0.4474885844748858, 0.4429223744292237, 0.4474885844748858, 0.4429223744292237, 0.4474885844748858, 0.4520547945205479, 0.4611872146118721, 0.4611872146118721, 0.4611872146118721, 0.4611872146118721, 0.4748858447488584, 0.5570776255707762, 0.5388127853881278, 0.5068493150684932, 0.8904109589041096, 0.4977168949771689, 0.4840182648401826, 0.4840182648401826, 0.4840182648401826, 0.4840182648401826, 0.4840182648401826, 0.4840182648401826, 0.4885844748858447, 0.4931506849315068, 0.5159817351598174, 0.54337899543379, 0.634703196347032, 0.9360730593607306], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/TAF4.gap.json b/pfam_gap_rates/TAF4.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b4864830ba7195d1c46cce86c02ec200d30d1f5d
--- /dev/null
+++ b/pfam_gap_rates/TAF4.gap.json
@@ -0,0 +1 @@
+{"family": "TAF4", "n_seqs": 335, "length": 432, "gap_rates": [0.4208955223880597, 0.39104477611940297, 0.36716417910447763, 0.36716417910447763, 0.36716417910447763, 0.3641791044776119, 0.3701492537313433, 0.36716417910447763, 0.3611940298507463, 0.35522388059701493, 0.35522388059701493, 0.3582089552238806, 0.3582089552238806, 0.35522388059701493, 0.3522388059701492, 0.3492537313432836, 0.3492537313432836, 0.34626865671641793, 0.34626865671641793, 0.34626865671641793, 0.8059701492537313, 0.6537313432835821, 0.6626865671641791, 0.9462686567164179, 0.9492537313432836, 0.9492537313432836, 0.9492537313432836, 0.9462686567164179, 0.9462686567164179, 0.7373134328358208, 0.7044776119402985, 0.6388059701492538, 0.6029850746268657, 0.4, 0.3283582089552239, 0.34328358208955223, 0.3253731343283582, 0.33432835820895523, 0.3194029850746269, 0.3164179104477612, 0.3194029850746269, 0.31044776119402984, 0.31044776119402984, 0.30149253731343284, 0.30149253731343284, 0.30149253731343284, 0.2865671641791045, 0.2835820895522388, 0.2865671641791045, 0.2656716417910448, 0.8925373134328358, 0.24776119402985075, 0.24776119402985075, 0.24776119402985075, 0.24776119402985075, 0.2507462686567164, 0.24776119402985075, 0.24776119402985075, 0.24477611940298508, 0.24776119402985075, 0.2417910447761194, 0.2417910447761194, 0.23582089552238805, 0.23582089552238805, 0.23283582089552238, 0.2298507462686567, 0.23283582089552238, 0.2298507462686567, 0.23582089552238805, 0.23283582089552238, 0.23283582089552238, 0.2417910447761194, 0.3253731343283582, 0.9134328358208955, 0.9194029850746268, 0.8985074626865671, 0.2507462686567164, 0.22686567164179106, 0.21194029850746268, 0.1761194029850746, 0.08059701492537313, 0.07462686567164178, 0.06865671641791045, 0.06567164179104477, 0.06567164179104477, 0.06567164179104477, 0.0626865671641791, 0.0626865671641791, 0.06567164179104477, 0.06567164179104477, 0.06567164179104477, 0.06865671641791045, 0.06865671641791045, 0.06865671641791045, 0.06567164179104477, 0.056716417910447764, 0.05970149253731343, 0.05970149253731343, 0.056716417910447764, 0.05970149253731343, 0.056716417910447764, 0.05970149253731343, 0.0626865671641791, 0.0626865671641791, 0.0626865671641791, 0.0626865671641791, 0.0626865671641791, 0.056716417910447764, 0.056716417910447764, 0.056716417910447764, 0.0955223880597015, 0.09253731343283582, 0.0955223880597015, 0.07462686567164178, 0.06567164179104477, 0.13432835820895522, 0.2865671641791045, 0.2537313432835821, 0.07761194029850746, 0.6328358208955224, 0.6358208955223881, 0.6417910447761194, 0.6447761194029851, 0.6656716417910448, 0.6955223880597015, 0.7373134328358208, 0.746268656716418, 0.7522388059701492, 0.7611940298507462, 0.7611940298507462, 0.7791044776119403, 0.7850746268656716, 0.7910447761194029, 0.7940298507462686, 0.8029850746268656, 0.8029850746268656, 0.8119402985074626, 0.817910447761194, 0.8208955223880597, 0.8208955223880597, 0.8328358208955224, 0.835820895522388, 0.8417910447761194, 0.8507462686567164, 0.8537313432835821, 0.8776119402985074, 0.8835820895522388, 0.8955223880597015, 0.9194029850746268, 0.9462686567164179, 0.9283582089552239, 0.9104477611940298, 0.8895522388059701, 0.8805970149253731, 0.8567164179104477, 0.8537313432835821, 0.844776119402985, 0.835820895522388, 0.835820895522388, 0.826865671641791, 0.8208955223880597, 0.8208955223880597, 0.8149253731343283, 0.808955223880597, 0.8029850746268656, 0.8, 0.7910447761194029, 0.7850746268656716, 0.7820895522388059, 0.764179104477612, 0.7611940298507462, 0.7582089552238805, 0.746268656716418, 0.7432835820895523, 0.7313432835820896, 0.6835820895522388, 0.6507462686567164, 0.6417910447761194, 0.6388059701492538, 0.6358208955223881, 0.6298507462686567, 0.5671641791044776, 0.0626865671641791, 0.05970149253731343, 0.05970149253731343, 0.0626865671641791, 0.06567164179104477, 0.06567164179104477, 0.06567164179104477, 0.06567164179104477, 0.0626865671641791, 0.0626865671641791, 0.06567164179104477, 0.0626865671641791, 0.0626865671641791, 0.05970149253731343, 0.05970149253731343, 0.056716417910447764, 0.05970149253731343, 0.05970149253731343, 0.05970149253731343, 0.0626865671641791, 0.06567164179104477, 0.06865671641791045, 0.06865671641791045, 0.06865671641791045, 0.06865671641791045, 0.6328358208955224, 0.6179104477611941, 0.6, 0.7432835820895523, 0.7492537313432835, 0.755223880597015, 0.7791044776119403, 0.7970149253731343, 0.8626865671641791, 0.8895522388059701, 0.9194029850746268, 0.9432835820895522, 0.9313432835820895, 0.9014925373134328, 0.8776119402985074, 0.8388059701492537, 0.7880597014925373, 0.764179104477612, 0.755223880597015, 0.7492537313432835, 0.7432835820895523, 0.1761194029850746, 0.23582089552238805, 0.191044776119403, 0.1253731343283582, 0.12238805970149254, 0.11343283582089553, 0.1044776119402985, 0.11044776119402985, 0.11343283582089553, 0.11343283582089553, 0.11641791044776119, 0.9402985074626866, 0.7492537313432835, 0.2656716417910448, 0.24477611940298508, 0.1791044776119403, 0.18507462686567164, 0.17313432835820897, 0.1582089552238806, 0.14626865671641792, 0.12238805970149254, 0.12835820895522387, 0.11343283582089553, 0.11343283582089553, 0.11940298507462686, 0.1373134328358209, 0.12238805970149254, 0.12238805970149254, 0.11044776119402985, 0.6119402985074627, 0.573134328358209, 0.14029850746268657, 0.18208955223880596, 0.18507462686567164, 0.18507462686567164, 0.19402985074626866, 0.8477611940298507, 0.7910447761194029, 0.16716417910447762, 0.1582089552238806, 0.1582089552238806, 0.1582089552238806, 0.1582089552238806, 0.14925373134328357, 0.14925373134328357, 0.14925373134328357, 0.1044776119402985, 0.1044776119402985, 0.1044776119402985, 0.1044776119402985, 0.1044776119402985, 0.10746268656716418, 0.1044776119402985, 0.1044776119402985, 0.1044776119402985, 0.1044776119402985, 0.1044776119402985, 0.1044776119402985, 0.1044776119402985, 0.6895522388059702, 0.7402985074626866, 0.7671641791044777, 0.8, 0.8238805970149253, 0.8805970149253731, 0.9104477611940298, 0.8805970149253731, 0.8328358208955224, 0.817910447761194, 0.7880597014925373, 0.7522388059701492, 0.7134328358208956, 0.6686567164179105, 0.16417910447761194, 0.15522388059701492, 0.13432835820895522, 0.8298507462686567, 0.14029850746268657, 0.18507462686567164, 0.15522388059701492, 0.3582089552238806, 0.13432835820895522, 0.1373134328358209, 0.1373134328358209, 0.13432835820895522, 0.1373134328358209, 0.14328358208955225, 0.16716417910447762, 0.7104477611940299, 0.2, 0.1761194029850746, 0.1761194029850746, 0.17313432835820897, 0.17313432835820897, 0.17313432835820897, 0.17313432835820897, 0.21492537313432836, 0.23283582089552238, 0.31044776119402984, 0.27761194029850744, 0.28059701492537314, 0.26865671641791045, 0.26865671641791045, 0.2955223880597015, 0.30149253731343284, 0.3492537313432836, 0.42686567164179107, 0.42686567164179107, 0.5880597014925373, 0.6119402985074627, 0.6268656716417911, 0.6716417910447762, 0.7014925373134329, 0.7194029850746269, 0.7522388059701492, 0.7940298507462686, 0.844776119402985, 0.8805970149253731, 0.9014925373134328, 0.9194029850746268, 0.9253731343283582, 0.9402985074626866, 0.9432835820895522, 0.9343283582089552, 0.9223880597014925, 0.9104477611940298, 0.8925373134328358, 0.8597014925373134, 0.8238805970149253, 0.7761194029850746, 0.7253731343283583, 0.7074626865671642, 0.6865671641791045, 0.6567164179104478, 0.6149253731343284, 0.6, 0.5850746268656717, 0.5134328358208955, 0.608955223880597, 0.6, 0.5940298507462687, 0.5611940298507463, 0.5492537313432836, 0.5462686567164179, 0.5343283582089552, 0.5164179104477612, 0.5194029850746269, 0.4, 0.8029850746268656, 0.8208955223880597, 0.8477611940298507, 0.8656716417910447, 0.8865671641791045, 0.9044776119402985, 0.9194029850746268, 0.9373134328358209, 0.9492537313432836, 0.9313432835820895, 0.9074626865671642, 0.8955223880597015, 0.8746268656716418, 0.8597014925373134, 0.826865671641791, 0.8149253731343283, 0.7791044776119403, 0.6179104477611941, 0.5582089552238806, 0.4835820895522388, 0.4388059701492537, 0.3880597014925373, 0.35522388059701493, 0.33432835820895523, 0.31343283582089554, 0.3044776119402985, 0.191044776119403, 0.191044776119403, 0.19402985074626866, 0.191044776119403, 0.191044776119403, 0.191044776119403, 0.191044776119403, 0.191044776119403, 0.191044776119403, 0.191044776119403, 0.19402985074626866, 0.19701492537313434, 0.19701492537313434, 0.19701492537313434, 0.19701492537313434, 0.2, 0.2, 0.20298507462686566, 0.208955223880597, 0.21492537313432836, 0.28059701492537314, 0.31343283582089554, 0.417910447761194, 0.3940298507462687, 0.42388059701492536, 0.44776119402985076, 0.5044776119402985, 0.5313432835820896, 0.591044776119403, 0.7373134328358208], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/TBP.gap.json b/pfam_gap_rates/TBP.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..1cb21716fff534b01f87a3f54c5667aa85aec11a
--- /dev/null
+++ b/pfam_gap_rates/TBP.gap.json
@@ -0,0 +1 @@
+{"family": "TBP", "n_seqs": 1421, "length": 85, "gap_rates": [0.661505981703026, 0.3279380717804363, 0.12596762843068263, 0.08163265306122448, 0.06615059817030261, 0.06052076002814919, 0.057705840957072485, 0.05629838142153413, 0.055594651653764954, 0.054187192118226604, 0.054187192118226604, 0.05348346235045742, 0.05277973258268825, 0.05137227304714989, 0.04996481351161154, 0.04644616467276566, 0.045038705137227304, 0.04433497536945813, 0.04433497536945813, 0.04433497536945813, 0.04433497536945813, 0.04433497536945813, 0.05629838142153413, 0.06052076002814919, 0.06263194933145672, 0.434201266713582, 0.5545390570021111, 0.5158339197748065, 0.04081632653061224, 0.04011259676284307, 0.038001407459535536, 0.03589021815622801, 0.03589021815622801, 0.036593947923997186, 0.036593947923997186, 0.03377902885292048, 0.03237156931738212, 0.09218859957776214, 0.04644616467276566, 0.030260380014074596, 0.03096410978184377, 0.03096410978184377, 0.023926812104152005, 0.02322308233638283, 0.023926812104152005, 0.02674173117522871, 0.028852920478536243, 0.029556650246305417, 0.02040816326530612, 0.013370865587614356, 0.014074595355383532, 0.014074595355383532, 0.014074595355383532, 0.014074595355383532, 0.014074595355383532, 0.014074595355383532, 0.014074595355383532, 0.01618578465869106, 0.01618578465869106, 0.018296973961998593, 0.018296973961998593, 0.02040816326530612, 0.02040816326530612, 0.04926108374384237, 0.036593947923997186, 0.03096410978184377, 0.03940886699507389, 0.04574243490499648, 0.04785362420830401, 0.048557353976073185, 0.04926108374384237, 0.05137227304714989, 0.05207600281491907, 0.05277973258268825, 0.05277973258268825, 0.055594651653764954, 0.059113300492610835, 0.06263194933145672, 0.06685432793807178, 0.07459535538353272, 0.0844475721323012, 0.08796622097114708, 0.12807881773399016, 0.24278676988036593, 0.8824771287825475], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/TFIIA_gamma_C.gap.json b/pfam_gap_rates/TFIIA_gamma_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..2300af717c9cee8150907e98f7e1534e6b6bc366
--- /dev/null
+++ b/pfam_gap_rates/TFIIA_gamma_C.gap.json
@@ -0,0 +1 @@
+{"family": "TFIIA_gamma_C", "n_seqs": 317, "length": 58, "gap_rates": [0.19242902208201892, 0.09779179810725552, 0.06624605678233439, 0.06309148264984227, 0.05993690851735016, 0.05362776025236593, 0.050473186119873815, 0.031545741324921134, 0.7949526813880127, 0.00946372239747634, 0.00946372239747634, 0.00946372239747634, 0.00946372239747634, 0.00946372239747634, 0.00946372239747634, 0.0031545741324921135, 0.0031545741324921135, 0.0031545741324921135, 0.0031545741324921135, 0.006309148264984227, 0.0, 0.0031545741324921135, 0.006309148264984227, 0.006309148264984227, 0.00946372239747634, 0.00946372239747634, 0.00946372239747634, 0.00946372239747634, 0.00946372239747634, 0.00946372239747634, 0.00946372239747634, 0.00946372239747634, 0.015772870662460567, 0.015772870662460567, 0.015772870662460567, 0.917981072555205, 0.9305993690851735, 0.9495268138801262, 0.9211356466876972, 0.807570977917981, 0.5362776025236593, 0.04416403785488959, 0.04416403785488959, 0.04416403785488959, 0.917981072555205, 0.861198738170347, 0.03785488958990536, 0.03785488958990536, 0.04416403785488959, 0.0473186119873817, 0.050473186119873815, 0.05993690851735016, 0.06309148264984227, 0.08201892744479496, 0.0914826498422713, 0.13249211356466878, 0.13564668769716087, 0.2586750788643533], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/TFIID-18kDa.gap.json b/pfam_gap_rates/TFIID-18kDa.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..8af54b6e1295c36c9bae980109374341eaaffec6
--- /dev/null
+++ b/pfam_gap_rates/TFIID-18kDa.gap.json
@@ -0,0 +1 @@
+{"family": "TFIID-18kDa", "n_seqs": 536, "length": 92, "gap_rates": [0.47201492537313433, 0.36380597014925375, 0.332089552238806, 0.2555970149253731, 0.22761194029850745, 0.20335820895522388, 0.1958955223880597, 0.17164179104477612, 0.125, 0.08768656716417911, 0.08022388059701492, 0.08022388059701492, 0.08022388059701492, 0.08022388059701492, 0.07835820895522388, 0.08395522388059702, 0.08022388059701492, 0.06529850746268656, 0.06529850746268656, 0.06343283582089553, 0.061567164179104475, 0.055970149253731345, 0.055970149253731345, 0.055970149253731345, 0.055970149253731345, 0.055970149253731345, 0.05223880597014925, 0.05223880597014925, 0.05223880597014925, 0.05223880597014925, 0.05223880597014925, 0.05223880597014925, 0.05223880597014925, 0.05037313432835821, 0.048507462686567165, 0.04664179104477612, 0.04477611940298507, 0.04477611940298507, 0.027985074626865673, 0.026119402985074626, 0.041044776119402986, 0.04477611940298507, 0.05037313432835821, 0.04664179104477612, 0.04477611940298507, 0.04664179104477612, 0.054104477611940295, 0.048507462686567165, 0.05037313432835821, 0.3917910447761194, 0.3880597014925373, 0.2537313432835821, 0.04664179104477612, 0.041044776119402986, 0.041044776119402986, 0.041044776119402986, 0.041044776119402986, 0.041044776119402986, 0.041044776119402986, 0.03917910447761194, 0.03917910447761194, 0.03917910447761194, 0.03917910447761194, 0.041044776119402986, 0.04291044776119403, 0.04664179104477612, 0.05037313432835821, 0.05223880597014925, 0.05223880597014925, 0.05223880597014925, 0.05223880597014925, 0.05223880597014925, 0.054104477611940295, 0.05783582089552239, 0.055970149253731345, 0.05970149253731343, 0.05970149253731343, 0.061567164179104475, 0.0708955223880597, 0.07462686567164178, 0.07462686567164178, 0.07649253731343283, 0.08208955223880597, 0.31156716417910446, 0.13059701492537312, 0.16977611940298507, 0.15858208955223882, 0.23694029850746268, 0.2891791044776119, 0.35074626865671643, 0.3843283582089552, 0.6138059701492538], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/TFIIE_alpha.gap.json b/pfam_gap_rates/TFIIE_alpha.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c322d973010f10d43376b9ef4fc372c2fbdbd3e9
--- /dev/null
+++ b/pfam_gap_rates/TFIIE_alpha.gap.json
@@ -0,0 +1 @@
+{"family": "TFIIE_alpha", "n_seqs": 415, "length": 114, "gap_rates": [0.8337349397590361, 0.40240963855421685, 0.35180722891566263, 0.3325301204819277, 0.3108433734939759, 0.27710843373493976, 0.24819277108433735, 0.2385542168674699, 0.2216867469879518, 0.20963855421686747, 0.20240963855421687, 0.1927710843373494, 0.19518072289156627, 0.17349397590361446, 0.10120481927710843, 0.08674698795180723, 0.07228915662650602, 0.06987951807228916, 0.06746987951807229, 0.06746987951807229, 0.06746987951807229, 0.06506024096385542, 0.06506024096385542, 0.09397590361445783, 0.02650602409638554, 0.02650602409638554, 0.02650602409638554, 0.02650602409638554, 0.01927710843373494, 0.01927710843373494, 0.01927710843373494, 0.01927710843373494, 0.01927710843373494, 0.01927710843373494, 0.01927710843373494, 0.01927710843373494, 0.016867469879518072, 0.00963855421686747, 0.007228915662650603, 0.007228915662650603, 0.007228915662650603, 0.007228915662650603, 0.004819277108433735, 0.004819277108433735, 0.004819277108433735, 0.004819277108433735, 0.004819277108433735, 0.004819277108433735, 0.004819277108433735, 0.004819277108433735, 0.004819277108433735, 0.004819277108433735, 0.004819277108433735, 0.004819277108433735, 0.004819277108433735, 0.004819277108433735, 0.004819277108433735, 0.007228915662650603, 0.00963855421686747, 0.012048192771084338, 0.9493975903614458, 0.9493975903614458, 0.9493975903614458, 0.03855421686746988, 0.03855421686746988, 0.04096385542168675, 0.04578313253012048, 0.4072289156626506, 0.7060240963855422, 0.946987951807229, 0.9132530120481928, 0.4843373493975904, 0.3927710843373494, 0.04578313253012048, 0.04819277108433735, 0.05060240963855422, 0.04819277108433735, 0.06506024096385542, 0.0819277108433735, 0.10602409638554217, 0.11325301204819277, 0.12048192771084337, 0.12048192771084337, 0.12048192771084337, 0.12048192771084337, 0.12530120481927712, 0.12771084337349398, 0.13012048192771083, 0.13493975903614458, 0.13493975903614458, 0.13734939759036144, 0.13493975903614458, 0.14216867469879518, 0.14216867469879518, 0.14698795180722893, 0.15180722891566265, 0.1566265060240964, 0.1566265060240964, 0.15903614457831325, 0.163855421686747, 0.17349397590361446, 0.17590361445783131, 0.1783132530120482, 0.18072289156626506, 0.19036144578313252, 0.25060240963855424, 0.3108433734939759, 0.3325301204819277, 0.3710843373493976, 0.41445783132530123, 0.4843373493975904, 0.5445783132530121, 0.6819277108433734, 0.8578313253012049], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/TFR_dimer.gap.json b/pfam_gap_rates/TFR_dimer.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d368be45cc61f0b47f5cb5a41d754e2fedb62566
--- /dev/null
+++ b/pfam_gap_rates/TFR_dimer.gap.json
@@ -0,0 +1 @@
+{"family": "TFR_dimer", "n_seqs": 634, "length": 146, "gap_rates": [0.5394321766561514, 0.40536277602523657, 0.2618296529968454, 0.21608832807570977, 0.19873817034700317, 0.17823343848580442, 0.167192429022082, 0.16246056782334384, 0.1529968454258675, 0.14353312302839116, 0.138801261829653, 0.13722397476340695, 0.13564668769716087, 0.13564668769716087, 0.13564668769716087, 0.12933753943217666, 0.1277602523659306, 0.12460567823343849, 0.12145110410094637, 0.11987381703470032, 0.11514195583596215, 0.11356466876971609, 0.11356466876971609, 0.11356466876971609, 0.11356466876971609, 0.11356466876971609, 0.14353312302839116, 0.12618296529968454, 0.5536277602523659, 0.5867507886435331, 0.6577287066246057, 0.8091482649842271, 0.8454258675078864, 0.8958990536277602, 0.8801261829652997, 0.831230283911672, 0.7870662460567823, 0.61198738170347, 0.5694006309148265, 0.5236593059936908, 0.4479495268138801, 0.4227129337539432, 0.29337539432176657, 0.13722397476340695, 0.09936908517350158, 0.0914826498422713, 0.05993690851735016, 0.0473186119873817, 0.05362776025236593, 0.055205047318611984, 0.361198738170347, 0.5410094637223974, 0.526813880126183, 0.5126182965299685, 0.028391167192429023, 0.02050473186119874, 0.01892744479495268, 0.017350157728706624, 0.015772870662460567, 0.015772870662460567, 0.012618296529968454, 0.011041009463722398, 0.011041009463722398, 0.011041009463722398, 0.012618296529968454, 0.012618296529968454, 0.012618296529968454, 0.012618296529968454, 0.012618296529968454, 0.012618296529968454, 0.02050473186119874, 0.04574132492113565, 0.9274447949526814, 0.9321766561514195, 0.9258675078864353, 0.031545741324921134, 0.033123028391167195, 0.026813880126182965, 0.02365930599369085, 0.02050473186119874, 0.017350157728706624, 0.02365930599369085, 0.012618296529968454, 0.014195583596214511, 0.012618296529968454, 0.012618296529968454, 0.017350157728706624, 0.02050473186119874, 0.017350157728706624, 0.02365930599369085, 0.025236593059936908, 0.031545741324921134, 0.11987381703470032, 0.08201892744479496, 0.9384858044164038, 0.07097791798107256, 0.050473186119873815, 0.050473186119873815, 0.0473186119873817, 0.025236593059936908, 0.025236593059936908, 0.02365930599369085, 0.02365930599369085, 0.02365930599369085, 0.02365930599369085, 0.02365930599369085, 0.025236593059936908, 0.026813880126182965, 0.026813880126182965, 0.9069400630914827, 0.031545741324921134, 0.6151419558359621, 0.6324921135646687, 0.6829652996845426, 0.8359621451104101, 0.9479495268138801, 0.944794952681388, 0.692429022082019, 0.6608832807570978, 0.6214511041009464, 0.5851735015772871, 0.03470031545741325, 0.03943217665615142, 0.04100946372239748, 0.03785488958990536, 0.03785488958990536, 0.03785488958990536, 0.03470031545741325, 0.03785488958990536, 0.04100946372239748, 0.04258675078864353, 0.04574132492113565, 0.050473186119873815, 0.055205047318611984, 0.0583596214511041, 0.061514195583596214, 0.0694006309148265, 0.07255520504731862, 0.0804416403785489, 0.09305993690851735, 0.10725552050473186, 0.11829652996845426, 0.14353312302839116, 0.1829652996845426, 0.2334384858044164, 0.8785488958990536], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/THDPS_N_2.gap.json b/pfam_gap_rates/THDPS_N_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..920f2a6de06d3a9dd03b60367ba9c60db2777167
--- /dev/null
+++ b/pfam_gap_rates/THDPS_N_2.gap.json
@@ -0,0 +1 @@
+{"family": "THDPS_N_2", "n_seqs": 587, "length": 68, "gap_rates": [0.5485519591141397, 0.12265758091993186, 0.06473594548551959, 0.049403747870528106, 0.03577512776831346, 0.03577512776831346, 0.03577512776831346, 0.034071550255536626, 0.034071550255536626, 0.034071550255536626, 0.034071550255536626, 0.034071550255536626, 0.03747870528109029, 0.044293015332197615, 0.04770017035775128, 0.04599659284497445, 0.044293015332197615, 0.10562180579216354, 0.15502555366269166, 0.19080068143100512, 0.5400340715502555, 0.22146507666098808, 0.08347529812606473, 0.039182282793867124, 0.02385008517887564, 0.020442930153321975, 0.018739352640545145, 0.017035775127768313, 0.015332197614991482, 0.008517887563884156, 0.0017035775127768314, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.6047700170357752, 0.005110732538330494, 0.010221465076660987, 0.0, 0.005110732538330494, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0017035775127768314, 0.0017035775127768314, 0.0017035775127768314, 0.008517887563884156, 0.008517887563884156, 0.008517887563884156, 0.02555366269165247, 0.0817717206132879], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/THOC2_N.gap.json b/pfam_gap_rates/THOC2_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..931b13a12e684a080be428c565afd45cbae355a5
--- /dev/null
+++ b/pfam_gap_rates/THOC2_N.gap.json
@@ -0,0 +1 @@
+{"family": "THOC2_N", "n_seqs": 482, "length": 838, "gap_rates": [0.8526970954356846, 0.8153526970954357, 0.8049792531120332, 0.7302904564315352, 0.7136929460580913, 0.7074688796680498, 0.6970954356846473, 0.6950207468879668, 0.6950207468879668, 0.7053941908713693, 0.6950207468879668, 0.6908713692946058, 0.6908713692946058, 0.6908713692946058, 0.6908713692946058, 0.6846473029045643, 0.6825726141078838, 0.6804979253112033, 0.6784232365145229, 0.6721991701244814, 0.6825726141078838, 0.6804979253112033, 0.946058091286307, 0.9045643153526971, 0.6908713692946058, 0.6867219917012448, 0.9253112033195021, 0.9377593360995851, 0.9336099585062241, 0.9232365145228216, 0.6742738589211619, 0.6701244813278008, 0.6618257261410788, 0.6535269709543569, 0.6514522821576764, 0.6431535269709544, 0.6369294605809128, 0.6286307053941909, 0.6141078838174274, 0.6078838174273858, 0.5995850622406639, 0.578838174273859, 0.5663900414937759, 0.5622406639004149, 0.558091286307054, 0.553941908713693, 0.553941908713693, 0.5622406639004149, 0.553941908713693, 0.553941908713693, 0.5601659751037344, 0.549792531120332, 0.5456431535269709, 0.5456431535269709, 0.5414937759336099, 0.5352697095435685, 0.941908713692946, 0.5352697095435685, 0.5352697095435685, 0.533195020746888, 0.5311203319502075, 0.5269709543568465, 0.5269709543568465, 0.524896265560166, 0.524896265560166, 0.5228215767634855, 0.5228215767634855, 0.5228215767634855, 0.520746887966805, 0.5186721991701245, 0.558091286307054, 0.6639004149377593, 0.6825726141078838, 0.6887966804979253, 0.6950207468879668, 0.7717842323651453, 0.7842323651452282, 0.7904564315352697, 0.7780082987551867, 0.7551867219917012, 0.8983402489626556, 0.9294605809128631, 0.941908713692946, 0.9232365145228216, 0.8360995850622407, 0.5062240663900415, 0.495850622406639, 0.49377593360995853, 0.491701244813278, 0.487551867219917, 0.487551867219917, 0.4854771784232365, 0.483402489626556, 0.48132780082987553, 0.48132780082987553, 0.48132780082987553, 0.47925311203319504, 0.47925311203319504, 0.48132780082987553, 0.47925311203319504, 0.47925311203319504, 0.487551867219917, 0.4896265560165975, 0.491701244813278, 0.470954356846473, 0.6141078838174274, 0.7074688796680498, 0.7136929460580913, 0.8070539419087137, 0.8672199170124482, 0.8879668049792531, 0.9087136929460581, 0.9087136929460581, 0.9190871369294605, 0.9232365145228216, 0.9294605809128631, 0.9356846473029046, 0.9356846473029046, 0.9377593360995851, 0.9398340248962656, 0.946058091286307, 0.9481327800829875, 0.946058091286307, 0.9439834024896265, 0.9398340248962656, 0.9356846473029046, 0.9356846473029046, 0.9356846473029046, 0.9253112033195021, 0.921161825726141, 0.91701244813278, 0.9087136929460581, 0.9004149377593361, 0.8858921161825726, 0.8630705394190872, 0.7904564315352697, 0.7136929460580913, 0.6929460580912863, 0.5933609958506224, 0.49377593360995853, 0.491701244813278, 0.48132780082987553, 0.47925311203319504, 0.45435684647302904, 0.45228215767634855, 0.45228215767634855, 0.45228215767634855, 0.45435684647302904, 0.44398340248962653, 0.7987551867219918, 0.946058091286307, 0.91701244813278, 0.7842323651452282, 0.44190871369294604, 0.44398340248962653, 0.44190871369294604, 0.43983402489626555, 0.43568464730290457, 0.43775933609958506, 0.43568464730290457, 0.4315352697095436, 0.42946058091286304, 0.42738589211618255, 0.42738589211618255, 0.42738589211618255, 0.42946058091286304, 0.42946058091286304, 0.43568464730290457, 0.43983402489626555, 0.42946058091286304, 0.42738589211618255, 0.4460580912863071, 0.4315352697095436, 0.4315352697095436, 0.42738589211618255, 0.42946058091286304, 0.42323651452282157, 0.4149377593360996, 0.41286307053941906, 0.4170124481327801, 0.941908713692946, 0.7157676348547718, 0.6099585062240664, 0.4211618257261411, 0.4107883817427386, 0.4045643153526971, 0.4004149377593361, 0.4004149377593361, 0.4004149377593361, 0.3983402489626556, 0.3983402489626556, 0.3983402489626556, 0.3983402489626556, 0.4066390041493776, 0.4066390041493776, 0.4066390041493776, 0.3962655601659751, 0.3962655601659751, 0.3921161825726141, 0.3921161825726141, 0.3921161825726141, 0.3921161825726141, 0.3921161825726141, 0.3921161825726141, 0.3921161825726141, 0.3921161825726141, 0.3921161825726141, 0.3921161825726141, 0.3921161825726141, 0.3921161825726141, 0.3900414937759336, 0.3921161825726141, 0.3921161825726141, 0.3921161825726141, 0.3921161825726141, 0.3941908713692946, 0.3941908713692946, 0.3962655601659751, 0.3962655601659751, 0.3962655601659751, 0.3962655601659751, 0.8962655601659751, 0.9024896265560166, 0.9087136929460581, 0.9315352697095436, 0.9481327800829875, 0.921161825726141, 0.9045643153526971, 0.9024896265560166, 0.8360995850622407, 0.5124481327800829, 0.5643153526970954, 0.5560165975103735, 0.533195020746888, 0.941908713692946, 0.516597510373444, 0.7178423236514523, 0.6141078838174274, 0.9481327800829875, 0.9356846473029046, 0.516597510373444, 0.46680497925311204, 0.43983402489626555, 0.42323651452282157, 0.4190871369294606, 0.4066390041493776, 0.4024896265560166, 0.4024896265560166, 0.4024896265560166, 0.4004149377593361, 0.4024896265560166, 0.4024896265560166, 0.4024896265560166, 0.3983402489626556, 0.3983402489626556, 0.3983402489626556, 0.3941908713692946, 0.3921161825726141, 0.3921161825726141, 0.3921161825726141, 0.3921161825726141, 0.3921161825726141, 0.3921161825726141, 0.3921161825726141, 0.3921161825726141, 0.3921161825726141, 0.3921161825726141, 0.3941908713692946, 0.3941908713692946, 0.3941908713692946, 0.3941908713692946, 0.3962655601659751, 0.4066390041493776, 0.4087136929460581, 0.41286307053941906, 0.48132780082987553, 0.508298755186722, 0.5414937759336099, 0.4896265560165975, 0.44813278008298757, 0.44190871369294604, 0.4460580912863071, 0.43983402489626555, 0.4315352697095436, 0.4336099585062241, 0.43568464730290457, 0.43568464730290457, 0.43568464730290457, 0.4315352697095436, 0.4315352697095436, 0.43775933609958506, 0.6410788381742739, 0.6431535269709544, 0.5269709543568465, 0.46887966804979253, 0.5456431535269709, 0.5477178423236515, 0.7614107883817427, 0.7614107883817427, 0.7655601659751037, 0.7717842323651453, 0.7759336099585062, 0.7780082987551867, 0.7800829875518672, 0.7821576763485477, 0.7883817427385892, 0.7925311203319502, 0.7966804979253111, 0.8029045643153527, 0.8049792531120332, 0.8091286307053942, 0.8174273858921162, 0.8319502074688797, 0.8402489626556017, 0.8485477178423236, 0.8589211618257261, 0.8630705394190872, 0.8651452282157677, 0.8713692946058091, 0.8713692946058091, 0.8713692946058091, 0.8713692946058091, 0.8713692946058091, 0.8713692946058091, 0.8713692946058091, 0.8713692946058091, 0.8713692946058091, 0.8713692946058091, 0.8734439834024896, 0.8734439834024896, 0.8734439834024896, 0.8734439834024896, 0.8734439834024896, 0.8734439834024896, 0.8734439834024896, 0.8734439834024896, 0.8796680497925311, 0.8796680497925311, 0.8921161825726142, 0.9232365145228216, 0.941908713692946, 0.9024896265560166, 0.8900414937759336, 0.8796680497925311, 0.8755186721991701, 0.8734439834024896, 0.8734439834024896, 0.8734439834024896, 0.8734439834024896, 0.8734439834024896, 0.8734439834024896, 0.8734439834024896, 0.8713692946058091, 0.8713692946058091, 0.8713692946058091, 0.8713692946058091, 0.8713692946058091, 0.8713692946058091, 0.8713692946058091, 0.8713692946058091, 0.8713692946058091, 0.8713692946058091, 0.8692946058091287, 0.8630705394190872, 0.8630705394190872, 0.8526970954356846, 0.8464730290456431, 0.8319502074688797, 0.8215767634854771, 0.8132780082987552, 0.8049792531120332, 0.8029045643153527, 0.7966804979253111, 0.7946058091286307, 0.7883817427385892, 0.7863070539419087, 0.7800829875518672, 0.7800829875518672, 0.7780082987551867, 0.7717842323651453, 0.7676348547717843, 0.7634854771784232, 0.7614107883817427, 0.7593360995850622, 0.7406639004149378, 0.7634854771784232, 0.7448132780082988, 0.7302904564315352, 0.7240663900414938, 0.7240663900414938, 0.7219917012448133, 0.7178423236514523, 0.7157676348547718, 0.7157676348547718, 0.7199170124481328, 0.7199170124481328, 0.7116182572614108, 0.7033195020746889, 0.6701244813278008, 0.9398340248962656, 0.6016597510373444, 0.5850622406639004, 0.5269709543568465, 0.45020746887966806, 0.42738589211618255, 0.4211618257261411, 0.4190871369294606, 0.4211618257261411, 0.41286307053941906, 0.4149377593360996, 0.41286307053941906, 0.4107883817427386, 0.4107883817427386, 0.4149377593360996, 0.41286307053941906, 0.4605809128630705, 0.45435684647302904, 0.44398340248962653, 0.4460580912863071, 0.44190871369294604, 0.8215767634854771, 0.8340248962655602, 0.6784232365145229, 0.5560165975103735, 0.4315352697095436, 0.4170124481327801, 0.41286307053941906, 0.4066390041493776, 0.4087136929460581, 0.4087136929460581, 0.4087136929460581, 0.4066390041493776, 0.4087136929460581, 0.4107883817427386, 0.4066390041493776, 0.4066390041493776, 0.4066390041493776, 0.4066390041493776, 0.4066390041493776, 0.4066390041493776, 0.4066390041493776, 0.4066390041493776, 0.4066390041493776, 0.4066390041493776, 0.4066390041493776, 0.4066390041493776, 0.4066390041493776, 0.4066390041493776, 0.4066390041493776, 0.4066390041493776, 0.4170124481327801, 0.4170124481327801, 0.4170124481327801, 0.4190871369294606, 0.4211618257261411, 0.42738589211618255, 0.4211618257261411, 0.42531120331950206, 0.42738589211618255, 0.42946058091286304, 0.42738589211618255, 0.43775933609958506, 0.44398340248962653, 0.44813278008298757, 0.43568464730290457, 0.43568464730290457, 0.4315352697095436, 0.4315352697095436, 0.4336099585062241, 0.43568464730290457, 0.4336099585062241, 0.4315352697095436, 0.43568464730290457, 0.43568464730290457, 0.43983402489626555, 0.6431535269709544, 0.6846473029045643, 0.5373443983402489, 0.7427385892116183, 0.8402489626556017, 0.8713692946058091, 0.9045643153526971, 0.8547717842323651, 0.8236514522821576, 0.5414937759336099, 0.5394190871369294, 0.520746887966805, 0.5145228215767634, 0.520746887966805, 0.483402489626556, 0.4979253112033195, 0.5186721991701245, 0.5311203319502075, 0.47925311203319504, 0.4730290456431535, 0.46887966804979253, 0.46265560165975106, 0.7717842323651453, 0.7489626556016598, 0.4730290456431535, 0.6078838174273858, 0.5809128630705395, 0.6203319502074689, 0.6078838174273858, 0.8029045643153527, 0.8174273858921162, 0.8340248962655602, 0.8734439834024896, 0.9107883817427386, 0.9336099585062241, 0.9481327800829875, 0.941908713692946, 0.9273858921161826, 0.8900414937759336, 0.8589211618257261, 0.8278008298755186, 0.8091286307053942, 0.7987551867219918, 0.7406639004149378, 0.8070539419087137, 0.7468879668049793, 0.7136929460580913, 0.6763485477178424, 0.6348547717842323, 0.6182572614107884, 0.5975103734439834, 0.549792531120332, 0.5124481327800829, 0.49377593360995853, 0.4730290456431535, 0.46680497925311204, 0.46887966804979253, 0.45850622406639, 0.46265560165975106, 0.46265560165975106, 0.46887966804979253, 0.508298755186722, 0.504149377593361, 0.4979253112033195, 0.48132780082987553, 0.46680497925311204, 0.47925311203319504, 0.4854771784232365, 0.4979253112033195, 0.5186721991701245, 0.7572614107883817, 0.7012448132780082, 0.6701244813278008, 0.46473029045643155, 0.9045643153526971, 0.45228215767634855, 0.45228215767634855, 0.45228215767634855, 0.45228215767634855, 0.45228215767634855, 0.45228215767634855, 0.45228215767634855, 0.45228215767634855, 0.45228215767634855, 0.45228215767634855, 0.45435684647302904, 0.45850622406639, 0.45850622406639, 0.45850622406639, 0.45850622406639, 0.45850622406639, 0.45850622406639, 0.45850622406639, 0.45850622406639, 0.45850622406639, 0.45850622406639, 0.4605809128630705, 0.4605809128630705, 0.4605809128630705, 0.46265560165975106, 0.46265560165975106, 0.46473029045643155, 0.46473029045643155, 0.46680497925311204, 0.46680497925311204, 0.46887966804979253, 0.46887966804979253, 0.46887966804979253, 0.8257261410788381, 0.46473029045643155, 0.46473029045643155, 0.46473029045643155, 0.46473029045643155, 0.46473029045643155, 0.46473029045643155, 0.46473029045643155, 0.46473029045643155, 0.46473029045643155, 0.46680497925311204, 0.46680497925311204, 0.46680497925311204, 0.46887966804979253, 0.46887966804979253, 0.470954356846473, 0.4730290456431535, 0.4730290456431535, 0.4730290456431535, 0.475103734439834, 0.483402489626556, 0.4854771784232365, 0.504149377593361, 0.6161825726141079, 0.6161825726141079, 0.5954356846473029, 0.6390041493775933, 0.6431535269709544, 0.6348547717842323, 0.6618257261410788, 0.6618257261410788, 0.8423236514522822, 0.8692946058091287, 0.9439834024896265, 0.9294605809128631, 0.8589211618257261, 0.8340248962655602, 0.7676348547717843, 0.7655601659751037, 0.7406639004149378, 0.7323651452282157, 0.7800829875518672, 0.7344398340248963, 0.7282157676348547, 0.7199170124481328, 0.7219917012448133, 0.7219917012448133, 0.7282157676348547, 0.7302904564315352, 0.7385892116182573, 0.7531120331950207, 0.9190871369294605, 0.7551867219917012, 0.7489626556016598, 0.7406639004149378, 0.7344398340248963, 0.7344398340248963, 0.7344398340248963, 0.7323651452282157, 0.946058091286307, 0.9315352697095436, 0.7323651452282157, 0.7302904564315352, 0.7282157676348547, 0.7282157676348547, 0.7282157676348547, 0.7282157676348547, 0.7282157676348547, 0.7282157676348547, 0.7282157676348547, 0.7282157676348547, 0.7282157676348547, 0.7282157676348547, 0.8070539419087137, 0.8112033195020747, 0.8713692946058091, 0.8547717842323651, 0.8153526970954357, 0.7904564315352697, 0.946058091286307, 0.921161825726141, 0.7344398340248963, 0.7344398340248963, 0.7323651452282157, 0.7323651452282157, 0.7365145228215768, 0.7365145228215768, 0.7344398340248963, 0.7302904564315352, 0.7323651452282157, 0.7282157676348547, 0.7261410788381742, 0.7199170124481328, 0.6950207468879668, 0.6784232365145229, 0.6659751037344398, 0.6535269709543569, 0.5995850622406639, 0.5767634854771784, 0.5601659751037344, 0.5414937759336099, 0.5352697095435685, 0.5311203319502075, 0.5124481327800829, 0.5020746887966805, 0.5, 0.4979253112033195, 0.495850622406639, 0.4854771784232365, 0.4730290456431535, 0.44813278008298757, 0.44190871369294604, 0.43568464730290457, 0.43775933609958506, 0.43775933609958506, 0.4336099585062241, 0.4336099585062241, 0.4336099585062241, 0.42738589211618255, 0.42738589211618255, 0.42946058091286304, 0.42946058091286304, 0.42738589211618255, 0.42738589211618255, 0.42531120331950206, 0.42531120331950206, 0.42531120331950206, 0.42323651452282157, 0.42323651452282157, 0.42323651452282157, 0.42323651452282157, 0.42323651452282157, 0.42323651452282157, 0.42531120331950206, 0.42531120331950206, 0.42531120331950206, 0.42531120331950206, 0.42531120331950206, 0.6141078838174274, 0.44813278008298757, 0.45228215767634855, 0.4460580912863071, 0.48132780082987553, 0.45850622406639, 0.7282157676348547, 0.7323651452282157, 0.7448132780082988, 0.8008298755186722, 0.8464730290456431, 0.8900414937759336, 0.9024896265560166, 0.9377593360995851, 0.9398340248962656, 0.9439834024896265, 0.9398340248962656, 0.921161825726141, 0.8962655601659751, 0.8775933609958506, 0.8049792531120332, 0.7883817427385892, 0.7385892116182573, 0.7302904564315352, 0.7282157676348547, 0.44190871369294604, 0.43568464730290457, 0.9481327800829875, 0.941908713692946, 0.42738589211618255, 0.42323651452282157, 0.4190871369294606, 0.4170124481327801, 0.4149377593360996, 0.4107883817427386, 0.4107883817427386, 0.4107883817427386, 0.4107883817427386, 0.4107883817427386, 0.41286307053941906, 0.4107883817427386, 0.41286307053941906, 0.4107883817427386, 0.4107883817427386, 0.4107883817427386, 0.4107883817427386, 0.4107883817427386, 0.4107883817427386, 0.4107883817427386, 0.41286307053941906, 0.41286307053941906, 0.41286307053941906, 0.4107883817427386, 0.4107883817427386, 0.4087136929460581, 0.4087136929460581, 0.4087136929460581, 0.4087136929460581, 0.4087136929460581, 0.4087136929460581, 0.4087136929460581, 0.4087136929460581, 0.4087136929460581, 0.4087136929460581, 0.4087136929460581, 0.4087136929460581, 0.4087136929460581, 0.4066390041493776, 0.4066390041493776, 0.41286307053941906, 0.41286307053941906, 0.4149377593360996, 0.4149377593360996, 0.4149377593360996, 0.4170124481327801, 0.4170124481327801, 0.4170124481327801, 0.4211618257261411, 0.4211618257261411, 0.4211618257261411, 0.42531120331950206, 0.4190871369294606, 0.46887966804979253, 0.43775933609958506, 0.5020746887966805, 0.4336099585062241, 0.42738589211618255, 0.42738589211618255, 0.42738589211618255, 0.42738589211618255, 0.42946058091286304, 0.42946058091286304, 0.42946058091286304, 0.42738589211618255, 0.42946058091286304, 0.42738589211618255, 0.42738589211618255, 0.42738589211618255, 0.42738589211618255, 0.4315352697095436, 0.4336099585062241, 0.4336099585062241, 0.4336099585062241, 0.4336099585062241, 0.4336099585062241, 0.4315352697095436, 0.4315352697095436, 0.43568464730290457, 0.43775933609958506, 0.43983402489626555, 0.44813278008298757, 0.45435684647302904, 0.45435684647302904, 0.46887966804979253, 0.504149377593361, 0.508298755186722, 0.520746887966805], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/TIMP.gap.json b/pfam_gap_rates/TIMP.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..1aea7b4ab2749b8f13b095ad2a3ea019e749bbc9
--- /dev/null
+++ b/pfam_gap_rates/TIMP.gap.json
@@ -0,0 +1 @@
+{"family": "TIMP", "n_seqs": 226, "length": 194, "gap_rates": [0.5973451327433629, 0.30973451327433627, 0.2831858407079646, 0.2610619469026549, 0.252212389380531, 0.252212389380531, 0.9380530973451328, 0.25663716814159293, 0.9469026548672567, 0.252212389380531, 0.252212389380531, 0.252212389380531, 0.24336283185840707, 0.22566371681415928, 0.22566371681415928, 0.22566371681415928, 0.22566371681415928, 0.22566371681415928, 0.2168141592920354, 0.2168141592920354, 0.19469026548672566, 0.15486725663716813, 0.15486725663716813, 0.15486725663716813, 0.1592920353982301, 0.1592920353982301, 0.15486725663716813, 0.15486725663716813, 0.1592920353982301, 0.16371681415929204, 0.17256637168141592, 0.17699115044247787, 0.17256637168141592, 0.168141592920354, 0.16371681415929204, 0.17699115044247787, 0.18141592920353983, 0.5752212389380531, 0.5796460176991151, 0.5442477876106194, 0.5353982300884956, 0.5176991150442478, 0.4778761061946903, 0.9247787610619469, 0.8761061946902655, 0.3805309734513274, 0.23008849557522124, 0.13274336283185842, 0.10619469026548672, 0.09734513274336283, 0.09292035398230089, 0.08849557522123894, 0.08849557522123894, 0.08849557522123894, 0.08849557522123894, 0.08849557522123894, 0.09292035398230089, 0.07964601769911504, 0.084070796460177, 0.07964601769911504, 0.07964601769911504, 0.07964601769911504, 0.084070796460177, 0.09292035398230089, 0.6902654867256637, 0.6592920353982301, 0.5619469026548672, 0.3008849557522124, 0.26991150442477874, 0.09292035398230089, 0.084070796460177, 0.08849557522123894, 0.09292035398230089, 0.084070796460177, 0.084070796460177, 0.07964601769911504, 0.07964601769911504, 0.084070796460177, 0.084070796460177, 0.11504424778761062, 0.10176991150442478, 0.1415929203539823, 0.07964601769911504, 0.0752212389380531, 0.07079646017699115, 0.07079646017699115, 0.8185840707964602, 0.06637168141592921, 0.06637168141592921, 0.061946902654867256, 0.07079646017699115, 0.7743362831858407, 0.6637168141592921, 0.0752212389380531, 0.07079646017699115, 0.07079646017699115, 0.06637168141592921, 0.07079646017699115, 0.0752212389380531, 0.0752212389380531, 0.24336283185840707, 0.12831858407079647, 0.12831858407079647, 0.46017699115044247, 0.15486725663716813, 0.1592920353982301, 0.15486725663716813, 0.1592920353982301, 0.13716814159292035, 0.1415929203539823, 0.1415929203539823, 0.15486725663716813, 0.1592920353982301, 0.18584070796460178, 0.26991150442477874, 0.2743362831858407, 0.2831858407079646, 0.3230088495575221, 0.34513274336283184, 0.3584070796460177, 0.3672566371681416, 0.37168141592920356, 0.3805309734513274, 0.3805309734513274, 0.38495575221238937, 0.38495575221238937, 0.38495575221238937, 0.3893805309734513, 0.3938053097345133, 0.3893805309734513, 0.41150442477876104, 0.4336283185840708, 0.4469026548672566, 0.4424778761061947, 0.43805309734513276, 0.4469026548672566, 0.45132743362831856, 0.45132743362831856, 0.45132743362831856, 0.9026548672566371, 0.45132743362831856, 0.4469026548672566, 0.4646017699115044, 0.4778761061946903, 0.4823008849557522, 0.4778761061946903, 0.4823008849557522, 0.5353982300884956, 0.5265486725663717, 0.5176991150442478, 0.5088495575221239, 0.5309734513274337, 0.915929203539823, 0.9424778761061947, 0.911504424778761, 0.5221238938053098, 0.5, 0.48672566371681414, 0.48672566371681414, 0.4823008849557522, 0.4823008849557522, 0.4778761061946903, 0.4778761061946903, 0.4823008849557522, 0.48672566371681414, 0.48672566371681414, 0.48672566371681414, 0.9380530973451328, 0.5929203539823009, 0.5796460176991151, 0.5796460176991151, 0.5398230088495575, 0.5221238938053098, 0.5088495575221239, 0.504424778761062, 0.5, 0.48672566371681414, 0.48672566371681414, 0.4823008849557522, 0.4823008849557522, 0.4823008849557522, 0.4823008849557522, 0.4823008849557522, 0.4823008849557522, 0.4911504424778761, 0.4911504424778761, 0.48672566371681414, 0.4911504424778761, 0.49557522123893805, 0.504424778761062, 0.504424778761062, 0.504424778761062, 0.504424778761062, 0.5088495575221239], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/TLD.gap.json b/pfam_gap_rates/TLD.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ce13cbaa42927bfda6c3b4ba3dd8e59d19f27e90
--- /dev/null
+++ b/pfam_gap_rates/TLD.gap.json
@@ -0,0 +1 @@
+{"family": "TLD", "n_seqs": 2806, "length": 207, "gap_rates": [0.44975053456878117, 0.21525302922309336, 0.16143977191732004, 0.1443335709194583, 0.13649322879543835, 0.12829650748396293, 0.12437633642195296, 0.11689237348538846, 0.11119030648610122, 0.10406272273699216, 0.09729151817533856, 0.09230220955096223, 0.0887384176764077, 0.08303635067712045, 0.07947255880256593, 0.07804704205274413, 0.07697790449037777, 0.07626514611546685, 0.07733428367783321, 0.07875980042765503, 0.9237348538845331, 0.9440484675694939, 0.9383464005702067, 0.7875980042765502, 0.07305773342836779, 0.07020669992872416, 0.06699928724162509, 0.06593014967925873, 0.06486101211689238, 0.06343549536707056, 0.06200997861724875, 0.06058446186742694, 0.05951532430506058, 0.7241625089094796, 0.9379900213827512, 0.9497505345687812, 0.9440484675694939, 0.9333570919458304, 0.6582323592302209, 0.05808980755523877, 0.10192444761225944, 0.05773342836778332, 0.07412687099073414, 0.27476835352815393, 0.05345687811831789, 0.05131860299358518, 0.05238774055595153, 0.05238774055595153, 0.05203136136849608, 0.05238774055595153, 0.05238774055595153, 0.05310049893086244, 0.05381325730577334, 0.05844618674269423, 0.05381325730577334, 0.8464005702066999, 0.9084105488239487, 0.9383464005702067, 0.9465431218816821, 0.9248039914468995, 0.880256593014968, 0.8114754098360656, 0.05666429080541696, 0.13150392017106202, 0.11012116892373486, 0.08802565930149679, 0.09836065573770492, 0.9155381325730577, 0.5488239486813971, 0.09052031361368496, 0.08054169636493229, 0.08089807555238775, 0.08018531717747683, 0.9426229508196722, 0.09052031361368496, 0.08018531717747683, 0.08125445473984319, 0.08267997148966501, 0.08303635067712045, 0.08339272986457591, 0.08303635067712045, 0.08588738417676407, 0.6133285816108339, 0.7352102637205987, 0.867783321454027, 0.9305060584461867, 0.7872416250890948, 0.6938702779757662, 0.5310049893086244, 0.10655737704918032, 0.17391304347826086, 0.14255167498218105, 0.1347113328581611, 0.1307911617961511, 0.13328581610833928, 0.1347113328581611, 0.1322166785459729, 0.12829650748396293, 0.7829650748396294, 0.8652886671418389, 0.8909479686386315, 0.8246614397719173, 0.7387740555951532, 0.16037063435495366, 0.15894511760513186, 0.15395580898075553, 0.1336421952957947, 0.9137562366357804, 0.9383464005702067, 0.9444048467569494, 0.9301496792587313, 0.9016393442622951, 0.13542409123307197, 0.1407697790449038, 0.1397006414825374, 0.1397006414825374, 0.14005702066999287, 0.14005702066999287, 0.14183891660727013, 0.14932287954383464, 0.9290805416963649, 0.9404846756949394, 0.9372772630078403, 0.9130434782608695, 0.21739130434782608, 0.15003563791874555, 0.8991446899501069, 0.9312188168210976, 0.9479686386315039, 0.9151817533856023, 0.8838203848895224, 0.14861012116892375, 0.14789736279401283, 0.14682822523164646, 0.15395580898075553, 0.21311475409836064, 0.36813970064148255, 0.5, 0.6550249465431219, 0.9019957234497505, 0.9330007127583749, 0.9454739843193157, 0.9465431218816821, 0.9383464005702067, 0.9223093371347113, 0.8749109052031362, 0.4119743406985032, 0.31076265146115467, 0.22238061297220243, 0.20420527441197434, 0.20812544547398432, 0.21097647897362795, 0.21454027084818247, 0.2195295794725588, 0.9294369208838203, 0.22665716322166785, 0.2391304347826087, 0.2384176764076978, 0.2505345687811832, 0.2444761225944405, 0.24839629365645047, 0.2615823235923022, 0.25766215253029223, 0.2655024946543122, 0.3011404133998574, 0.774768353528154, 0.9059158945117605, 0.9272986457590877, 0.8200285103349965, 0.7063435495367071, 0.2683535281539558, 0.26585887384176765, 0.2615823235923022, 0.26407697790449036, 0.26977904490377763, 0.27476835352815393, 0.27904490377761937, 0.2851033499643621, 0.2936564504632929, 0.6906628652886672, 0.7872416250890948, 0.8428367783321454, 0.8791874554526016, 0.9069850320741268, 0.9429793300071276, 0.9280114041339986, 0.8927298645759087, 0.860655737704918, 0.8121881682109765, 0.7605131860299359, 0.6671418389166073, 0.3549536707056308, 0.30933713471133284, 0.2936564504632929, 0.2908054169636493, 0.2908054169636493, 0.29044903777619385, 0.2908054169636493, 0.2940128296507484, 0.29508196721311475, 0.2965074839629366, 0.29971489665003564, 0.3082679971489665, 0.3182466143977192, 0.34176764076977906, 0.3955808980755524, 0.8806129722024234], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/TMEM132.gap.json b/pfam_gap_rates/TMEM132.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..399036fff9b946423e71941977205b1131ecdd27
--- /dev/null
+++ b/pfam_gap_rates/TMEM132.gap.json
@@ -0,0 +1 @@
+{"family": "TMEM132", "n_seqs": 213, "length": 388, "gap_rates": [0.39906103286384975, 0.2676056338028169, 0.25821596244131456, 0.25821596244131456, 0.2535211267605634, 0.24882629107981222, 0.24882629107981222, 0.24413145539906103, 0.24413145539906103, 0.24413145539906103, 0.24413145539906103, 0.24413145539906103, 0.24413145539906103, 0.24413145539906103, 0.24413145539906103, 0.24413145539906103, 0.24413145539906103, 0.24413145539906103, 0.24413145539906103, 0.24413145539906103, 0.24413145539906103, 0.24882629107981222, 0.24882629107981222, 0.24882629107981222, 0.24882629107981222, 0.24882629107981222, 0.9342723004694836, 0.9483568075117371, 0.9248826291079812, 0.24882629107981222, 0.24413145539906103, 0.24882629107981222, 0.24413145539906103, 0.23943661971830985, 0.23943661971830985, 0.23943661971830985, 0.2347417840375587, 0.2300469483568075, 0.2300469483568075, 0.2300469483568075, 0.2347417840375587, 0.22535211267605634, 0.22535211267605634, 0.22535211267605634, 0.22065727699530516, 0.2112676056338028, 0.2112676056338028, 0.20657276995305165, 0.16901408450704225, 0.1596244131455399, 0.17370892018779344, 0.18309859154929578, 0.17370892018779344, 0.17370892018779344, 0.1784037558685446, 0.18309859154929578, 0.16901408450704225, 0.1643192488262911, 0.1643192488262911, 0.16901408450704225, 0.16901408450704225, 0.16901408450704225, 0.16901408450704225, 0.1643192488262911, 0.1596244131455399, 0.1596244131455399, 0.16901408450704225, 0.1643192488262911, 0.1596244131455399, 0.1596244131455399, 0.1596244131455399, 0.1596244131455399, 0.1596244131455399, 0.1596244131455399, 0.1596244131455399, 0.1596244131455399, 0.1643192488262911, 0.1596244131455399, 0.9295774647887324, 0.9248826291079812, 0.1596244131455399, 0.1596244131455399, 0.1596244131455399, 0.1596244131455399, 0.1596244131455399, 0.1596244131455399, 0.1596244131455399, 0.1596244131455399, 0.1643192488262911, 0.1643192488262911, 0.1643192488262911, 0.16901408450704225, 0.16901408450704225, 0.17370892018779344, 0.18309859154929578, 0.17370892018779344, 0.1784037558685446, 0.1784037558685446, 0.1784037558685446, 0.1784037558685446, 0.1784037558685446, 0.18779342723004694, 0.18779342723004694, 0.18779342723004694, 0.18309859154929578, 0.18309859154929578, 0.18309859154929578, 0.19718309859154928, 0.19248826291079812, 0.19248826291079812, 0.19718309859154928, 0.19718309859154928, 0.20187793427230047, 0.3051643192488263, 0.9389671361502347, 0.9389671361502347, 0.9436619718309859, 0.9483568075117371, 0.9483568075117371, 0.9483568075117371, 0.9436619718309859, 0.9389671361502347, 0.9389671361502347, 0.9389671361502347, 0.3380281690140845, 0.38028169014084506, 0.38028169014084506, 0.38967136150234744, 0.4225352112676056, 0.7089201877934272, 0.9107981220657277, 0.8403755868544601, 0.47417840375586856, 0.4788732394366197, 0.4788732394366197, 0.47417840375586856, 0.4460093896713615, 0.4460093896713615, 0.4131455399061033, 0.4131455399061033, 0.41784037558685444, 0.41784037558685444, 0.4225352112676056, 0.4084507042253521, 0.3427230046948357, 0.8356807511737089, 0.8732394366197183, 0.8779342723004695, 0.892018779342723, 0.892018779342723, 0.892018779342723, 0.92018779342723, 0.9436619718309859, 0.9436619718309859, 0.9248826291079812, 0.892018779342723, 0.892018779342723, 0.892018779342723, 0.8826291079812206, 0.8779342723004695, 0.8685446009389671, 0.8309859154929577, 0.30985915492957744, 0.27699530516431925, 0.24413145539906103, 0.20657276995305165, 0.19248826291079812, 0.18779342723004694, 0.1784037558685446, 0.17370892018779344, 0.16901408450704225, 0.1596244131455399, 0.1596244131455399, 0.1643192488262911, 0.1596244131455399, 0.1596244131455399, 0.1596244131455399, 0.1596244131455399, 0.15492957746478872, 0.15492957746478872, 0.15492957746478872, 0.15492957746478872, 0.1596244131455399, 0.1596244131455399, 0.1596244131455399, 0.1596244131455399, 0.1643192488262911, 0.19248826291079812, 0.3333333333333333, 0.5868544600938967, 0.3380281690140845, 0.3286384976525822, 0.3145539906103286, 0.30985915492957744, 0.30985915492957744, 0.3004694835680751, 0.29107981220657275, 0.28169014084507044, 0.2535211267605634, 0.9061032863849765, 0.20187793427230047, 0.17370892018779344, 0.18309859154929578, 0.1643192488262911, 0.15492957746478872, 0.15492957746478872, 0.15492957746478872, 0.1643192488262911, 0.1643192488262911, 0.1643192488262911, 0.1643192488262911, 0.1643192488262911, 0.1643192488262911, 0.17370892018779344, 0.17370892018779344, 0.16901408450704225, 0.1784037558685446, 0.17370892018779344, 0.1784037558685446, 0.1784037558685446, 0.1784037558685446, 0.18309859154929578, 0.18309859154929578, 0.19248826291079812, 0.9107981220657277, 0.19718309859154928, 0.647887323943662, 0.3427230046948357, 0.3192488262910798, 0.19248826291079812, 0.19248826291079812, 0.9389671361502347, 0.8497652582159625, 0.20657276995305165, 0.18779342723004694, 0.18309859154929578, 0.18309859154929578, 0.18779342723004694, 0.18779342723004694, 0.18309859154929578, 0.18309859154929578, 0.18779342723004694, 0.18309859154929578, 0.18779342723004694, 0.18309859154929578, 0.1784037558685446, 0.17370892018779344, 0.17370892018779344, 0.17370892018779344, 0.18779342723004694, 0.28169014084507044, 0.9342723004694836, 0.22065727699530516, 0.19718309859154928, 0.18309859154929578, 0.1784037558685446, 0.1784037558685446, 0.18309859154929578, 0.18309859154929578, 0.18779342723004694, 0.18309859154929578, 0.18309859154929578, 0.18309859154929578, 0.18779342723004694, 0.18779342723004694, 0.18779342723004694, 0.18779342723004694, 0.19248826291079812, 0.18779342723004694, 0.18309859154929578, 0.18779342723004694, 0.18309859154929578, 0.18309859154929578, 0.18309859154929578, 0.18309859154929578, 0.18309859154929578, 0.18309859154929578, 0.18309859154929578, 0.18779342723004694, 0.18779342723004694, 0.18309859154929578, 0.19718309859154928, 0.19248826291079812, 0.18309859154929578, 0.18309859154929578, 0.18309859154929578, 0.18309859154929578, 0.18309859154929578, 0.19248826291079812, 0.92018779342723, 0.18779342723004694, 0.19248826291079812, 0.19248826291079812, 0.19248826291079812, 0.19248826291079812, 0.19718309859154928, 0.19718309859154928, 0.2112676056338028, 0.20187793427230047, 0.9436619718309859, 0.20187793427230047, 0.20187793427230047, 0.20187793427230047, 0.20657276995305165, 0.2112676056338028, 0.2112676056338028, 0.20657276995305165, 0.20657276995305165, 0.20657276995305165, 0.20657276995305165, 0.20187793427230047, 0.19718309859154928, 0.19248826291079812, 0.19248826291079812, 0.19718309859154928, 0.20657276995305165, 0.2112676056338028, 0.2112676056338028, 0.215962441314554, 0.215962441314554, 0.215962441314554, 0.22065727699530516, 0.22065727699530516, 0.22065727699530516, 0.22535211267605634, 0.22535211267605634, 0.22535211267605634, 0.22535211267605634, 0.2300469483568075, 0.2300469483568075, 0.2300469483568075, 0.22535211267605634, 0.352112676056338, 0.3474178403755869, 0.3333333333333333, 0.323943661971831, 0.24882629107981222, 0.23943661971830985, 0.24413145539906103, 0.24413145539906103, 0.23943661971830985, 0.23943661971830985, 0.24413145539906103, 0.24413145539906103, 0.24413145539906103, 0.24882629107981222, 0.24882629107981222, 0.26291079812206575, 0.26291079812206575, 0.25821596244131456, 0.25821596244131456, 0.25821596244131456, 0.26291079812206575, 0.26291079812206575, 0.26291079812206575, 0.26291079812206575, 0.26291079812206575, 0.9436619718309859, 0.4788732394366197, 0.4413145539906103, 0.3474178403755869, 0.3380281690140845, 0.3145539906103286, 0.3145539906103286, 0.29577464788732394, 0.3004694835680751, 0.29577464788732394, 0.29577464788732394, 0.29577464788732394, 0.29577464788732394, 0.29577464788732394, 0.3051643192488263, 0.29577464788732394, 0.3004694835680751, 0.29577464788732394, 0.3004694835680751, 0.29577464788732394, 0.29577464788732394, 0.29577464788732394, 0.29577464788732394, 0.3004694835680751, 0.3145539906103286, 0.3286384976525822, 0.352112676056338, 0.37089201877934275, 0.38028169014084506, 0.4413145539906103, 0.6431924882629108], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/TMEM132D_C.gap.json b/pfam_gap_rates/TMEM132D_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..3f1400abbddc6dac32c81dd1dcfa4c047ee3181d
--- /dev/null
+++ b/pfam_gap_rates/TMEM132D_C.gap.json
@@ -0,0 +1 @@
+{"family": "TMEM132D_C", "n_seqs": 116, "length": 132, "gap_rates": [0.7241379310344828, 0.603448275862069, 0.5603448275862069, 0.4827586206896552, 0.4396551724137931, 0.39655172413793105, 0.3706896551724138, 0.3620689655172414, 0.3448275862068966, 0.3448275862068966, 0.3275862068965517, 0.31896551724137934, 0.31896551724137934, 0.46551724137931033, 0.39655172413793105, 0.9310344827586207, 0.3017241379310345, 0.19827586206896552, 0.1810344827586207, 0.1206896551724138, 0.9482758620689655, 0.12931034482758622, 0.10344827586206896, 0.08620689655172414, 0.07758620689655173, 0.06896551724137931, 0.04310344827586207, 0.017241379310344827, 0.017241379310344827, 0.017241379310344827, 0.008620689655172414, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.008620689655172414, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.8017241379310345, 0.8017241379310345, 0.8103448275862069, 0.8103448275862069, 0.8103448275862069, 0.8275862068965517, 0.8275862068965517, 0.8448275862068966, 0.853448275862069, 0.8706896551724138, 0.8706896551724138, 0.8879310344827587, 0.9051724137931034, 0.9051724137931034, 0.9051724137931034, 0.9310344827586207, 0.9310344827586207, 0.9482758620689655, 0.9310344827586207, 0.9137931034482759, 0.9051724137931034, 0.9051724137931034, 0.9051724137931034, 0.8706896551724138, 0.8706896551724138, 0.8706896551724138, 0.8448275862068966, 0.8362068965517241, 0.8275862068965517, 0.8275862068965517, 0.8103448275862069, 0.8103448275862069, 0.8103448275862069, 0.8017241379310345, 0.8017241379310345, 0.0, 0.05172413793103448, 0.0603448275862069, 0.04310344827586207, 0.05172413793103448, 0.0603448275862069, 0.07758620689655173, 0.8620689655172413, 0.09482758620689655, 0.08620689655172414, 0.0603448275862069, 0.017241379310344827, 0.9137931034482759, 0.9310344827586207, 0.9482758620689655, 0.9482758620689655, 0.9482758620689655, 0.9396551724137931, 0.9137931034482759, 0.9137931034482759, 0.017241379310344827, 0.02586206896551724, 0.02586206896551724, 0.02586206896551724, 0.02586206896551724, 0.02586206896551724, 0.034482758620689655, 0.04310344827586207, 0.04310344827586207, 0.05172413793103448, 0.05172413793103448, 0.05172413793103448, 0.25862068965517243, 0.7672413793103449], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/TMEM189_B_dmain.gap.json b/pfam_gap_rates/TMEM189_B_dmain.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..2397343036b6dca42e8baa8caf327333ea6f5778
--- /dev/null
+++ b/pfam_gap_rates/TMEM189_B_dmain.gap.json
@@ -0,0 +1 @@
+{"family": "TMEM189_B_dmain", "n_seqs": 183, "length": 184, "gap_rates": [0.4098360655737705, 0.17486338797814208, 0.15300546448087432, 0.14207650273224043, 0.1366120218579235, 0.13114754098360656, 0.12021857923497267, 0.12021857923497267, 0.12021857923497267, 0.11475409836065574, 0.11475409836065574, 0.11475409836065574, 0.11475409836065574, 0.11475409836065574, 0.11475409836065574, 0.11475409836065574, 0.11475409836065574, 0.11475409836065574, 0.11475409836065574, 0.12021857923497267, 0.11475409836065574, 0.12021857923497267, 0.12021857923497267, 0.22404371584699453, 0.12568306010928962, 0.12021857923497267, 0.1092896174863388, 0.11475409836065574, 0.4918032786885246, 0.10382513661202186, 0.08743169398907104, 0.08196721311475409, 0.07650273224043716, 0.07650273224043716, 0.07650273224043716, 0.07103825136612021, 0.07103825136612021, 0.07103825136612021, 0.07103825136612021, 0.07103825136612021, 0.07103825136612021, 0.07103825136612021, 0.07103825136612021, 0.07650273224043716, 0.07103825136612021, 0.07650273224043716, 0.08196721311475409, 0.07103825136612021, 0.07103825136612021, 0.07103825136612021, 0.07103825136612021, 0.3551912568306011, 0.07103825136612021, 0.07103825136612021, 0.07103825136612021, 0.07103825136612021, 0.639344262295082, 0.6120218579234973, 0.6065573770491803, 0.5846994535519126, 0.10382513661202186, 0.08743169398907104, 0.08743169398907104, 0.46994535519125685, 0.08743169398907104, 0.07103825136612021, 0.07103825136612021, 0.08743169398907104, 0.08196721311475409, 0.08743169398907104, 0.09836065573770492, 0.12021857923497267, 0.5027322404371585, 0.43169398907103823, 0.40437158469945356, 0.5081967213114754, 0.5573770491803278, 0.5901639344262295, 0.5792349726775956, 0.5355191256830601, 0.4972677595628415, 0.37158469945355194, 0.33879781420765026, 0.28415300546448086, 0.25136612021857924, 0.09836065573770492, 0.09289617486338798, 0.08743169398907104, 0.07650273224043716, 0.07650273224043716, 0.08196721311475409, 0.08196721311475409, 0.07650273224043716, 0.07650273224043716, 0.07650273224043716, 0.07650273224043716, 0.08196721311475409, 0.08196721311475409, 0.07650273224043716, 0.07103825136612021, 0.07650273224043716, 0.07650273224043716, 0.07650273224043716, 0.07103825136612021, 0.07650273224043716, 0.07103825136612021, 0.07103825136612021, 0.07103825136612021, 0.07103825136612021, 0.07103825136612021, 0.07103825136612021, 0.07103825136612021, 0.07103825136612021, 0.09836065573770492, 0.25136612021857924, 0.6284153005464481, 0.07650273224043716, 0.07103825136612021, 0.07103825136612021, 0.07103825136612021, 0.07103825136612021, 0.07103825136612021, 0.07650273224043716, 0.07650273224043716, 0.07650273224043716, 0.07650273224043716, 0.07650273224043716, 0.07650273224043716, 0.07650273224043716, 0.07650273224043716, 0.07650273224043716, 0.07650273224043716, 0.07650273224043716, 0.07650273224043716, 0.08196721311475409, 0.08196721311475409, 0.08196721311475409, 0.08743169398907104, 0.08743169398907104, 0.08743169398907104, 0.08743169398907104, 0.08743169398907104, 0.08743169398907104, 0.14754098360655737, 0.1092896174863388, 0.09289617486338798, 0.09289617486338798, 0.09289617486338798, 0.09289617486338798, 0.09289617486338798, 0.08743169398907104, 0.08743169398907104, 0.08743169398907104, 0.09289617486338798, 0.08743169398907104, 0.09836065573770492, 0.09836065573770492, 0.09836065573770492, 0.10382513661202186, 0.10382513661202186, 0.12021857923497267, 0.14754098360655737, 0.18579234972677597, 0.19672131147540983, 0.19672131147540983, 0.19672131147540983, 0.20218579234972678, 0.20765027322404372, 0.20765027322404372, 0.20765027322404372, 0.21311475409836064, 0.21311475409836064, 0.22404371584699453, 0.22404371584699453, 0.22950819672131148, 0.23497267759562843, 0.23497267759562843, 0.23497267759562843, 0.24043715846994534, 0.2459016393442623, 0.2459016393442623, 0.2459016393442623, 0.2459016393442623, 0.273224043715847], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/TMEM43.gap.json b/pfam_gap_rates/TMEM43.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..78f41ede77a7f6d3df960aaff78cbcbc8ed68c0a
--- /dev/null
+++ b/pfam_gap_rates/TMEM43.gap.json
@@ -0,0 +1 @@
+{"family": "TMEM43", "n_seqs": 192, "length": 358, "gap_rates": [0.4895833333333333, 0.3802083333333333, 0.3697916666666667, 0.359375, 0.359375, 0.359375, 0.359375, 0.359375, 0.359375, 0.359375, 0.359375, 0.3645833333333333, 0.40625, 0.4375, 0.4427083333333333, 0.578125, 0.46875, 0.4427083333333333, 0.4270833333333333, 0.421875, 0.4010416666666667, 0.921875, 0.3541666666666667, 0.3541666666666667, 0.3385416666666667, 0.328125, 0.3177083333333333, 0.3020833333333333, 0.2708333333333333, 0.2708333333333333, 0.2604166666666667, 0.2604166666666667, 0.2604166666666667, 0.28125, 0.2760416666666667, 0.2760416666666667, 0.2760416666666667, 0.2760416666666667, 0.2760416666666667, 0.2604166666666667, 0.2604166666666667, 0.265625, 0.2604166666666667, 0.2760416666666667, 0.3697916666666667, 0.3385416666666667, 0.2916666666666667, 0.28125, 0.3020833333333333, 0.28125, 0.24479166666666666, 0.24479166666666666, 0.9010416666666666, 0.3229166666666667, 0.234375, 0.21875, 0.21875, 0.20833333333333334, 0.9427083333333334, 0.203125, 0.19791666666666666, 0.203125, 0.19791666666666666, 0.19791666666666666, 0.19270833333333334, 0.18229166666666666, 0.18229166666666666, 0.19791666666666666, 0.1875, 0.1875, 0.1875, 0.19791666666666666, 0.19270833333333334, 0.18229166666666666, 0.17708333333333334, 0.17708333333333334, 0.171875, 0.18229166666666666, 0.18229166666666666, 0.203125, 0.171875, 0.17708333333333334, 0.171875, 0.17708333333333334, 0.18229166666666666, 0.17708333333333334, 0.1875, 0.18229166666666666, 0.1875, 0.1875, 0.1875, 0.1875, 0.1875, 0.1875, 0.1875, 0.3854166666666667, 0.3854166666666667, 0.4270833333333333, 0.4375, 0.4583333333333333, 0.453125, 0.7083333333333334, 0.765625, 0.8489583333333334, 0.875, 0.8854166666666666, 0.90625, 0.921875, 0.9322916666666666, 0.9427083333333334, 0.9427083333333334, 0.9427083333333334, 0.9479166666666666, 0.9479166666666666, 0.9479166666666666, 0.9479166666666666, 0.9427083333333334, 0.9427083333333334, 0.9375, 0.921875, 0.9114583333333334, 0.8958333333333334, 0.875, 0.8645833333333334, 0.7916666666666666, 0.7239583333333334, 0.6927083333333334, 0.6354166666666666, 0.703125, 0.5989583333333334, 0.390625, 0.3177083333333333, 0.28125, 0.24479166666666666, 0.23958333333333334, 0.171875, 0.171875, 0.16666666666666666, 0.16666666666666666, 0.16666666666666666, 0.171875, 0.15625, 0.14583333333333334, 0.140625, 0.13541666666666666, 0.13541666666666666, 0.13020833333333334, 0.18229166666666666, 0.15104166666666666, 0.140625, 0.13020833333333334, 0.8802083333333334, 0.8958333333333334, 0.9010416666666666, 0.921875, 0.9322916666666666, 0.9375, 0.9427083333333334, 0.9479166666666666, 0.9479166666666666, 0.9479166666666666, 0.9479166666666666, 0.9427083333333334, 0.9322916666666666, 0.9322916666666666, 0.921875, 0.9010416666666666, 0.8854166666666666, 0.8697916666666666, 0.125, 0.125, 0.125, 0.11979166666666667, 0.11979166666666667, 0.11979166666666667, 0.11979166666666667, 0.11979166666666667, 0.11979166666666667, 0.11979166666666667, 0.11979166666666667, 0.11979166666666667, 0.11979166666666667, 0.7135416666666666, 0.8541666666666666, 0.859375, 0.8645833333333334, 0.875, 0.8645833333333334, 0.859375, 0.859375, 0.8385416666666666, 0.6458333333333334, 0.13020833333333334, 0.13541666666666666, 0.13541666666666666, 0.11979166666666667, 0.11979166666666667, 0.11979166666666667, 0.11979166666666667, 0.13020833333333334, 0.13020833333333334, 0.13020833333333334, 0.13020833333333334, 0.9322916666666666, 0.9375, 0.9010416666666666, 0.13020833333333334, 0.11979166666666667, 0.125, 0.9270833333333334, 0.125, 0.125, 0.11979166666666667, 0.140625, 0.140625, 0.84375, 0.8489583333333334, 0.8541666666666666, 0.859375, 0.8697916666666666, 0.875, 0.8802083333333334, 0.890625, 0.890625, 0.8958333333333334, 0.90625, 0.90625, 0.90625, 0.9114583333333334, 0.921875, 0.9270833333333334, 0.9270833333333334, 0.9270833333333334, 0.9375, 0.9270833333333334, 0.9270833333333334, 0.9270833333333334, 0.921875, 0.90625, 0.90625, 0.90625, 0.9010416666666666, 0.8958333333333334, 0.890625, 0.8854166666666666, 0.875, 0.875, 0.8645833333333334, 0.8541666666666666, 0.8489583333333334, 0.8489583333333334, 0.84375, 0.171875, 0.18229166666666666, 0.9427083333333334, 0.9166666666666666, 0.16666666666666666, 0.15625, 0.14583333333333334, 0.13541666666666666, 0.13541666666666666, 0.13541666666666666, 0.13541666666666666, 0.13541666666666666, 0.14583333333333334, 0.140625, 0.14583333333333334, 0.140625, 0.171875, 0.16666666666666666, 0.15625, 0.15625, 0.15104166666666666, 0.14583333333333334, 0.15625, 0.15104166666666666, 0.14583333333333334, 0.14583333333333334, 0.15104166666666666, 0.16145833333333334, 0.15104166666666666, 0.15625, 0.15625, 0.16666666666666666, 0.16145833333333334, 0.15104166666666666, 0.15625, 0.15104166666666666, 0.15104166666666666, 0.15104166666666666, 0.15104166666666666, 0.15104166666666666, 0.15625, 0.15625, 0.16145833333333334, 0.16145833333333334, 0.16666666666666666, 0.171875, 0.17708333333333334, 0.17708333333333334, 0.19270833333333334, 0.19791666666666666, 0.19791666666666666, 0.203125, 0.19791666666666666, 0.203125, 0.203125, 0.203125, 0.203125, 0.21354166666666666, 0.21875, 0.21875, 0.22916666666666666, 0.22916666666666666, 0.234375, 0.22395833333333334, 0.22395833333333334, 0.22395833333333334, 0.2708333333333333, 0.8229166666666666, 0.8489583333333334, 0.8385416666666666, 0.8020833333333334, 0.265625, 0.2708333333333333, 0.265625, 0.2552083333333333, 0.25, 0.2760416666666667, 0.2760416666666667, 0.25, 0.25, 0.9427083333333334, 0.9322916666666666, 0.24479166666666666, 0.24479166666666666, 0.25, 0.24479166666666666, 0.24479166666666666, 0.24479166666666666, 0.25, 0.2552083333333333, 0.2552083333333333, 0.2552083333333333, 0.2604166666666667, 0.2604166666666667, 0.2708333333333333, 0.2760416666666667, 0.2916666666666667, 0.3020833333333333, 0.3229166666666667, 0.328125, 0.328125, 0.328125, 0.34375, 0.3645833333333333, 0.4114583333333333, 0.4322916666666667], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/TOBE.gap.json b/pfam_gap_rates/TOBE.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..baf2fa7d922298aef516b219ef99df8d4ed629fb
--- /dev/null
+++ b/pfam_gap_rates/TOBE.gap.json
@@ -0,0 +1 @@
+{"family": "TOBE", "n_seqs": 1811, "length": 67, "gap_rates": [0.7056874654886803, 0.21535063500828272, 0.1496410822749862, 0.11430149088901159, 0.0883489784649365, 0.053561568194367755, 0.03313086692435119, 0.025400331308669245, 0.017117614577581448, 0.01435670900055218, 0.011595803423522915, 0.011043622308117063, 0.009939260077305357, 0.009939260077305357, 0.009387078961899503, 0.007730535615681944, 0.006626173384870237, 0.006626173384870237, 0.9342904472667035, 0.8498067366096079, 0.034235229155162895, 0.03257868580894534, 0.008282716731087797, 0.007730535615681944, 0.004969630038652678, 0.005521811154058531, 0.011043622308117063, 0.011595803423522915, 0.012147984538928768, 0.012147984538928768, 0.012700165654334622, 0.014908890115958034, 0.013252346769740474, 0.9116510215350635, 0.45886250690226393, 0.010491441192711209, 0.0016565433462175593, 0.0, 0.0, 0.0, 0.010491441192711209, 0.011595803423522915, 0.0027609055770292656, 0.0, 0.0, 0.0005521811154058532, 0.0005521811154058532, 0.1684152401987852, 0.1673108779679735, 0.15240198785201547, 0.1507454445057979, 0.0011043622308117063, 0.0011043622308117063, 0.0016565433462175593, 0.0016565433462175593, 0.0027609055770292656, 0.0033130866924351186, 0.003865267807840972, 0.004969630038652678, 0.012147984538928768, 0.015461071231363888, 0.020982882385422418, 0.03699613473219216, 0.05687465488680287, 0.1049144119271121, 0.32799558255107675, 0.5483158475980121], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/TOBE_2.gap.json b/pfam_gap_rates/TOBE_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..6c91180a27c135f0dccc2cfe5f8c41995715acf7
--- /dev/null
+++ b/pfam_gap_rates/TOBE_2.gap.json
@@ -0,0 +1 @@
+{"family": "TOBE_2", "n_seqs": 5000, "length": 87, "gap_rates": [0.322, 0.0578, 0.027, 0.0144, 0.0126, 0.0104, 0.0098, 0.0088, 0.008, 0.0076, 0.4158, 0.6936, 0.852, 0.9252, 0.7814, 0.6128, 0.4654, 0.4276, 0.0656, 0.0822, 0.6914, 0.0812, 0.9376, 0.9152, 0.0064, 0.7018, 0.0024, 0.0012, 0.001, 0.0008, 0.0008, 0.0006, 0.0006, 0.0004, 0.0006, 0.0006, 0.0004, 0.0002, 0.0002, 0.0002, 0.0002, 0.0002, 0.0002, 0.0016, 0.0018, 0.0032, 0.0056, 0.0026, 0.0038, 0.0038, 0.0056, 0.0266, 0.0146, 0.237, 0.0344, 0.037, 0.0362, 0.0296, 0.0196, 0.0218, 0.0274, 0.0834, 0.6866, 0.827, 0.6654, 0.9106, 0.6026, 0.0914, 0.0704, 0.0364, 0.0302, 0.0298, 0.0322, 0.032, 0.0326, 0.0342, 0.037, 0.0504, 0.06, 0.0786, 0.0984, 0.1118, 0.1262, 0.1494, 0.1826, 0.2444, 0.373], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/TPK_B1_binding.gap.json b/pfam_gap_rates/TPK_B1_binding.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..759df2c2c61ff920b0f44f0aadf0f9c7c12bfc44
--- /dev/null
+++ b/pfam_gap_rates/TPK_B1_binding.gap.json
@@ -0,0 +1 @@
+{"family": "TPK_B1_binding", "n_seqs": 1026, "length": 71, "gap_rates": [0.8489278752436648, 0.7183235867446394, 0.6647173489278753, 0.5906432748538012, 0.7261208576998051, 0.6978557504873294, 0.5009746588693957, 0.47173489278752434, 0.43664717348927873, 0.4395711500974659, 0.6676413255360624, 0.9346978557504874, 0.1871345029239766, 0.25925925925925924, 0.06237816764132553, 0.021442495126705652, 0.016569200779727095, 0.011695906432748537, 0.010721247563352826, 0.010721247563352826, 0.009746588693957114, 0.009746588693957114, 0.24171539961013644, 0.13937621832358674, 0.012670565302144249, 0.009746588693957114, 0.07017543859649122, 0.03508771929824561, 0.00682261208576998, 0.00682261208576998, 0.008771929824561403, 0.00682261208576998, 0.00682261208576998, 0.00682261208576998, 0.00682261208576998, 0.00682261208576998, 0.00682261208576998, 0.005847953216374269, 0.01364522417153996, 0.028265107212475632, 0.024366471734892786, 0.022417153996101363, 0.023391812865497075, 0.02046783625730994, 0.02046783625730994, 0.021442495126705652, 0.01949317738791423, 0.022417153996101363, 0.11306042884990253, 0.021442495126705652, 0.021442495126705652, 0.021442495126705652, 0.022417153996101363, 0.023391812865497075, 0.024366471734892786, 0.02729044834307992, 0.5906432748538012, 0.10136452241715399, 0.08382066276803118, 0.3148148148148148, 0.3732943469785575, 0.46588693957115007, 0.06530214424951267, 0.06432748538011696, 0.07115009746588694, 0.0847953216374269, 0.10916179337231968, 0.14230019493177387, 0.17543859649122806, 0.3128654970760234, 0.4873294346978557], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/TPR_14.gap.json b/pfam_gap_rates/TPR_14.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d69ecb6f08f46647943bd7580c6ad84e705103e7
--- /dev/null
+++ b/pfam_gap_rates/TPR_14.gap.json
@@ -0,0 +1 @@
+{"family": "TPR_14", "n_seqs": 434, "length": 44, "gap_rates": [0.8663594470046083, 0.6267281105990783, 0.4147465437788018, 0.24193548387096775, 0.1497695852534562, 0.0944700460829493, 0.03225806451612903, 0.016129032258064516, 0.013824884792626729, 0.009216589861751152, 0.004608294930875576, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.004608294930875576, 0.004608294930875576, 0.0069124423963133645, 0.027649769585253458, 0.055299539170506916, 0.08755760368663594, 0.14055299539170507, 0.35944700460829493, 0.7511520737327189], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/TPR_7.gap.json b/pfam_gap_rates/TPR_7.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..615ccf9b23aea23beac27658d20f58c0cd020ef7
--- /dev/null
+++ b/pfam_gap_rates/TPR_7.gap.json
@@ -0,0 +1 @@
+{"family": "TPR_7", "n_seqs": 2661, "length": 36, "gap_rates": [0.5456595264937993, 0.2983840661405487, 0.18602029312288612, 0.10296880871852687, 0.05975197294250282, 0.028560691469372415, 0.025554302893649003, 0.020293122886133032, 0.013528748590755355, 0.006012777151446824, 0.003006388575723412, 0.0026305900037579856, 0.000751597143930853, 0.0003757985719654265, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.001503194287861706, 0.006764374295377677, 0.010146561443066516, 0.015783540022547914, 0.3160465990229237, 0.3258173618940248, 0.9394964299135663, 0.1428034573468621, 0.18752348741074784, 0.2420142803457347, 0.3423524990605036, 0.4295377677564825, 0.5174746335963923, 0.6065388951521984, 0.7049981210071402, 0.8658399098083427], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/TRAM1.gap.json b/pfam_gap_rates/TRAM1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e9e75008273fbe503d09f3704ae8595d83e70e93
--- /dev/null
+++ b/pfam_gap_rates/TRAM1.gap.json
@@ -0,0 +1 @@
+{"family": "TRAM1", "n_seqs": 414, "length": 73, "gap_rates": [0.6642512077294686, 0.27294685990338163, 0.12077294685990338, 0.057971014492753624, 0.04830917874396135, 0.04830917874396135, 0.043478260869565216, 0.043478260869565216, 0.043478260869565216, 0.26570048309178745, 0.2632850241545894, 0.26570048309178745, 0.5748792270531401, 0.6714975845410628, 0.8357487922705314, 0.9251207729468599, 0.9444444444444444, 0.9347826086956522, 0.8913043478260869, 0.7681159420289855, 0.6328502415458938, 0.46618357487922707, 0.34782608695652173, 0.15217391304347827, 0.09903381642512077, 0.09178743961352658, 0.04589371980676329, 0.021739130434782608, 0.012077294685990338, 0.007246376811594203, 0.004830917874396135, 0.004830917874396135, 0.004830917874396135, 0.0024154589371980675, 0.0024154589371980675, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0024154589371980675, 0.0024154589371980675, 0.0024154589371980675, 0.0024154589371980675, 0.0024154589371980675, 0.0024154589371980675, 0.0024154589371980675, 0.0024154589371980675, 0.0024154589371980675, 0.007246376811594203, 0.0024154589371980675, 0.0024154589371980675, 0.0024154589371980675, 0.01932367149758454, 0.016908212560386472, 0.016908212560386472, 0.016908212560386472, 0.021739130434782608, 0.08454106280193237, 0.09420289855072464, 0.0966183574879227, 0.11835748792270531, 0.1497584541062802, 0.24396135265700483, 0.6231884057971014], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/TRM.gap.json b/pfam_gap_rates/TRM.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ee1db4ecbbfa274dd3fa0d33ecf0b0eb8df11a5f
--- /dev/null
+++ b/pfam_gap_rates/TRM.gap.json
@@ -0,0 +1 @@
+{"family": "TRM", "n_seqs": 744, "length": 543, "gap_rates": [0.9475806451612904, 0.9354838709677419, 0.9153225806451613, 0.8884408602150538, 0.8400537634408602, 0.7795698924731183, 0.7405913978494624, 0.7150537634408602, 0.6989247311827957, 0.706989247311828, 0.9408602150537635, 0.6491935483870968, 0.625, 0.5806451612903226, 0.5295698924731183, 0.489247311827957, 0.45026881720430106, 0.3951612903225806, 0.3709677419354839, 0.3629032258064516, 0.3575268817204301, 0.3575268817204301, 0.3575268817204301, 0.3575268817204301, 0.3575268817204301, 0.3521505376344086, 0.3521505376344086, 0.3481182795698925, 0.3481182795698925, 0.3481182795698925, 0.3481182795698925, 0.3481182795698925, 0.3467741935483871, 0.3467741935483871, 0.3467741935483871, 0.3467741935483871, 0.5080645161290323, 0.5080645161290323, 0.6276881720430108, 0.510752688172043, 0.3911290322580645, 0.3709677419354839, 0.3763440860215054, 0.3655913978494624, 0.3655913978494624, 0.3655913978494624, 0.3763440860215054, 0.510752688172043, 0.4650537634408602, 0.46236559139784944, 0.3897849462365591, 0.5913978494623656, 0.5994623655913979, 0.603494623655914, 0.625, 0.6344086021505376, 0.6424731182795699, 0.646505376344086, 0.6612903225806451, 0.6693548387096774, 0.6841397849462365, 0.7002688172043011, 0.7083333333333334, 0.728494623655914, 0.7405913978494624, 0.75, 0.7567204301075269, 0.760752688172043, 0.7647849462365591, 0.7741935483870968, 0.7862903225806451, 0.7916666666666666, 0.7970430107526881, 0.8051075268817204, 0.8185483870967742, 0.8266129032258065, 0.8346774193548387, 0.8387096774193549, 0.8440860215053764, 0.8467741935483871, 0.8508064516129032, 0.8561827956989247, 0.8696236559139785, 0.8776881720430108, 0.8844086021505376, 0.8911290322580645, 0.9059139784946236, 0.9166666666666666, 0.9220430107526881, 0.9274193548387096, 0.9354838709677419, 0.9354838709677419, 0.9381720430107527, 0.9395161290322581, 0.9475806451612904, 0.9435483870967742, 0.9381720430107527, 0.9381720430107527, 0.9354838709677419, 0.9327956989247311, 0.9233870967741935, 0.9193548387096774, 0.9126344086021505, 0.8978494623655914, 0.8897849462365591, 0.8790322580645161, 0.8736559139784946, 0.864247311827957, 0.853494623655914, 0.8508064516129032, 0.8454301075268817, 0.842741935483871, 0.8373655913978495, 0.8306451612903226, 0.8239247311827957, 0.8145161290322581, 0.803763440860215, 0.7943548387096774, 0.7903225806451613, 0.782258064516129, 0.7674731182795699, 0.7634408602150538, 0.7567204301075269, 0.7540322580645161, 0.7419354838709677, 0.7379032258064516, 0.7217741935483871, 0.7016129032258065, 0.6935483870967742, 0.6801075268817204, 0.6612903225806451, 0.6559139784946236, 0.6438172043010753, 0.6370967741935484, 0.6330645161290323, 0.6223118279569892, 0.5994623655913979, 0.592741935483871, 0.5913978494623656, 0.375, 0.3400537634408602, 0.33602150537634407, 0.3333333333333333, 0.33198924731182794, 0.33064516129032256, 0.32661290322580644, 0.32526881720430106, 0.32526881720430106, 0.32526881720430106, 0.32526881720430106, 0.32526881720430106, 0.32526881720430106, 0.32661290322580644, 0.32661290322580644, 0.3279569892473118, 0.3279569892473118, 0.3279569892473118, 0.3279569892473118, 0.3293010752688172, 0.4435483870967742, 0.353494623655914, 0.3400537634408602, 0.3293010752688172, 0.3293010752688172, 0.3333333333333333, 0.3279569892473118, 0.3239247311827957, 0.3293010752688172, 0.32123655913978494, 0.3185483870967742, 0.31989247311827956, 0.3225806451612903, 0.3225806451612903, 0.32661290322580644, 0.3239247311827957, 0.3239247311827957, 0.3239247311827957, 0.3239247311827957, 0.3225806451612903, 0.3225806451612903, 0.3225806451612903, 0.3225806451612903, 0.34408602150537637, 0.34946236559139787, 0.3333333333333333, 0.3293010752688172, 0.33064516129032256, 0.33064516129032256, 0.3279569892473118, 0.8172043010752689, 0.8924731182795699, 0.9112903225806451, 0.9206989247311828, 0.9341397849462365, 0.9395161290322581, 0.9422043010752689, 0.9448924731182796, 0.9395161290322581, 0.9354838709677419, 0.9314516129032258, 0.918010752688172, 0.9045698924731183, 0.8817204301075269, 0.75, 0.33736559139784944, 0.9368279569892473, 0.3978494623655914, 0.364247311827957, 0.33064516129032256, 0.3293010752688172, 0.32526881720430106, 0.33198924731182794, 0.34946236559139787, 0.32661290322580644, 0.32661290322580644, 0.3293010752688172, 0.3293010752688172, 0.3293010752688172, 0.33064516129032256, 0.41801075268817206, 0.5846774193548387, 0.8763440860215054, 0.907258064516129, 0.9112903225806451, 0.9206989247311828, 0.9314516129032258, 0.9489247311827957, 0.9260752688172043, 0.9139784946236559, 0.9099462365591398, 0.9005376344086021, 0.6236559139784946, 0.5591397849462365, 0.40860215053763443, 0.31989247311827956, 0.31451612903225806, 0.3131720430107527, 0.3118279569892473, 0.31048387096774194, 0.3077956989247312, 0.3064516129032258, 0.3077956989247312, 0.30913978494623656, 0.3077956989247312, 0.3077956989247312, 0.3077956989247312, 0.3077956989247312, 0.3077956989247312, 0.3077956989247312, 0.31048387096774194, 0.30913978494623656, 0.3077956989247312, 0.30913978494623656, 0.30913978494623656, 0.30913978494623656, 0.31048387096774194, 0.31048387096774194, 0.31048387096774194, 0.30913978494623656, 0.30913978494623656, 0.30913978494623656, 0.31048387096774194, 0.3118279569892473, 0.3575268817204301, 0.9475806451612904, 0.353494623655914, 0.31586021505376344, 0.31586021505376344, 0.31586021505376344, 0.31451612903225806, 0.3172043010752688, 0.3172043010752688, 0.31586021505376344, 0.31586021505376344, 0.31451612903225806, 0.31586021505376344, 0.3172043010752688, 0.3185483870967742, 0.3172043010752688, 0.3172043010752688, 0.8252688172043011, 0.31989247311827956, 0.32123655913978494, 0.3239247311827957, 0.3185483870967742, 0.31989247311827956, 0.31989247311827956, 0.3185483870967742, 0.3185483870967742, 0.32123655913978494, 0.3225806451612903, 0.32123655913978494, 0.32123655913978494, 0.32123655913978494, 0.3225806451612903, 0.32526881720430106, 0.32526881720430106, 0.32526881720430106, 0.32526881720430106, 0.32526881720430106, 0.32123655913978494, 0.3225806451612903, 0.32123655913978494, 0.3172043010752688, 0.3172043010752688, 0.3185483870967742, 0.3185483870967742, 0.31989247311827956, 0.3185483870967742, 0.3185483870967742, 0.3185483870967742, 0.3185483870967742, 0.3172043010752688, 0.31586021505376344, 0.31586021505376344, 0.3185483870967742, 0.31989247311827956, 0.31989247311827956, 0.31989247311827956, 0.31989247311827956, 0.3185483870967742, 0.3172043010752688, 0.3172043010752688, 0.31586021505376344, 0.31586021505376344, 0.31586021505376344, 0.3172043010752688, 0.3172043010752688, 0.31586021505376344, 0.31586021505376344, 0.31586021505376344, 0.31586021505376344, 0.3118279569892473, 0.3118279569892473, 0.31451612903225806, 0.3131720430107527, 0.3131720430107527, 0.31451612903225806, 0.31586021505376344, 0.3172043010752688, 0.3185483870967742, 0.3185483870967742, 0.32123655913978494, 0.3225806451612903, 0.32526881720430106, 0.3333333333333333, 0.3387096774193548, 0.3481182795698925, 0.35080645161290325, 0.35618279569892475, 0.3548387096774194, 0.35618279569892475, 0.35080645161290325, 0.33602150537634407, 0.32526881720430106, 0.3239247311827957, 0.3225806451612903, 0.32661290322580644, 0.32661290322580644, 0.3293010752688172, 0.33064516129032256, 0.353494623655914, 0.946236559139785, 0.35618279569892475, 0.3588709677419355, 0.3481182795698925, 0.5120967741935484, 0.5268817204301075, 0.5376344086021505, 0.5497311827956989, 0.6061827956989247, 0.7325268817204301, 0.8104838709677419, 0.8817204301075269, 0.9301075268817204, 0.9475806451612904, 0.9059139784946236, 0.8413978494623656, 0.7782258064516129, 0.6653225806451613, 0.571236559139785, 0.5389784946236559, 0.5309139784946236, 0.521505376344086, 0.5080645161290323, 0.35080645161290325, 0.6370967741935484, 0.6639784946236559, 0.5981182795698925, 0.5806451612903226, 0.5631720430107527, 0.5604838709677419, 0.5631720430107527, 0.5725806451612904, 0.5793010752688172, 0.5766129032258065, 0.603494623655914, 0.3736559139784946, 0.5228494623655914, 0.5403225806451613, 0.5725806451612904, 0.6236559139784946, 0.7325268817204301, 0.8172043010752689, 0.853494623655914, 0.9233870967741935, 0.9448924731182796, 0.9314516129032258, 0.8830645161290323, 0.8346774193548387, 0.7903225806451613, 0.7163978494623656, 0.5954301075268817, 0.553763440860215, 0.5295698924731183, 0.4879032258064516, 0.3481182795698925, 0.34139784946236557, 0.33602150537634407, 0.33198924731182794, 0.33198924731182794, 0.3293010752688172, 0.3279569892473118, 0.3293010752688172, 0.32661290322580644, 0.32526881720430106, 0.3239247311827957, 0.3239247311827957, 0.31989247311827956, 0.31989247311827956, 0.32123655913978494, 0.32123655913978494, 0.32123655913978494, 0.32123655913978494, 0.32123655913978494, 0.32123655913978494, 0.3239247311827957, 0.3225806451612903, 0.3225806451612903, 0.3225806451612903, 0.3225806451612903, 0.3225806451612903, 0.3239247311827957, 0.3239247311827957, 0.32526881720430106, 0.3239247311827957, 0.3225806451612903, 0.32123655913978494, 0.3225806451612903, 0.32526881720430106, 0.33198924731182794, 0.3346774193548387, 0.4583333333333333, 0.5134408602150538, 0.9126344086021505, 0.9381720430107527, 0.842741935483871, 0.46102150537634407, 0.4274193548387097, 0.41263440860215056, 0.3588709677419355, 0.6290322580645161, 0.9422043010752689, 0.9139784946236559, 0.6061827956989247, 0.3400537634408602, 0.31989247311827956, 0.3131720430107527, 0.30913978494623656, 0.3024193548387097, 0.3024193548387097, 0.2970430107526882, 0.29973118279569894, 0.29973118279569894, 0.3024193548387097, 0.3024193548387097, 0.29973118279569894, 0.2849462365591398, 0.2849462365591398, 0.478494623655914, 0.9435483870967742, 0.8911290322580645, 0.31048387096774194, 0.30376344086021506, 0.29973118279569894, 0.2956989247311828, 0.3064516129032258, 0.30913978494623656, 0.31048387096774194, 0.31048387096774194, 0.3118279569892473, 0.31048387096774194, 0.30913978494623656, 0.3185483870967742, 0.3131720430107527, 0.3131720430107527, 0.31048387096774194, 0.30913978494623656, 0.30913978494623656, 0.30913978494623656, 0.30913978494623656, 0.3077956989247312, 0.31048387096774194, 0.31586021505376344, 0.3131720430107527, 0.31451612903225806, 0.31451612903225806, 0.31451612903225806, 0.3172043010752688, 0.31586021505376344, 0.31451612903225806, 0.31451612903225806, 0.31989247311827956, 0.31989247311827956, 0.3239247311827957, 0.32526881720430106, 0.3293010752688172, 0.3239247311827957, 0.3225806451612903, 0.3225806451612903, 0.3239247311827957, 0.3239247311827957, 0.3239247311827957, 0.32526881720430106, 0.32526881720430106, 0.32661290322580644, 0.3293010752688172, 0.32526881720430106, 0.32526881720430106, 0.32526881720430106, 0.32526881720430106, 0.32526881720430106, 0.32526881720430106, 0.3279569892473118, 0.3279569892473118, 0.33064516129032256, 0.3346774193548387, 0.33736559139784944, 0.3481182795698925, 0.36693548387096775, 0.40591397849462363, 0.4879032258064516, 0.6330645161290323], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/TTRAP.gap.json b/pfam_gap_rates/TTRAP.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..919200709090b2eeb1510159fec9b037ff137d63
--- /dev/null
+++ b/pfam_gap_rates/TTRAP.gap.json
@@ -0,0 +1 @@
+{"family": "TTRAP", "n_seqs": 122, "length": 65, "gap_rates": [0.03278688524590164, 0.02459016393442623, 0.02459016393442623, 0.02459016393442623, 0.02459016393442623, 0.02459016393442623, 0.01639344262295082, 0.01639344262295082, 0.01639344262295082, 0.01639344262295082, 0.01639344262295082, 0.01639344262295082, 0.01639344262295082, 0.00819672131147541, 0.00819672131147541, 0.00819672131147541, 0.00819672131147541, 0.00819672131147541, 0.00819672131147541, 0.00819672131147541, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.9426229508196722, 0.0, 0.0, 0.0, 0.0, 0.6557377049180327, 0.6065573770491803, 0.3524590163934426, 0.00819672131147541, 0.00819672131147541, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.00819672131147541, 0.00819672131147541, 0.00819672131147541, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.05737704918032787, 0.05737704918032787, 0.09016393442622951, 0.09836065573770492, 0.09836065573770492, 0.10655737704918032, 0.13114754098360656, 0.20491803278688525, 0.30327868852459017, 0.5737704918032787], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Talin_middle.gap.json b/pfam_gap_rates/Talin_middle.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..49e6f8ef7b8273b5343af7ef9c69bff17d2754dd
--- /dev/null
+++ b/pfam_gap_rates/Talin_middle.gap.json
@@ -0,0 +1 @@
+{"family": "Talin_middle", "n_seqs": 116, "length": 223, "gap_rates": [0.19827586206896552, 0.13793103448275862, 0.13793103448275862, 0.13793103448275862, 0.13793103448275862, 0.13793103448275862, 0.12931034482758622, 0.12931034482758622, 0.12931034482758622, 0.12931034482758622, 0.12931034482758622, 0.11206896551724138, 0.11206896551724138, 0.11206896551724138, 0.11206896551724138, 0.11206896551724138, 0.11206896551724138, 0.11206896551724138, 0.11206896551724138, 0.11206896551724138, 0.11206896551724138, 0.11206896551724138, 0.11206896551724138, 0.11206896551724138, 0.1206896551724138, 0.1206896551724138, 0.10344827586206896, 0.11206896551724138, 0.11206896551724138, 0.8189655172413793, 0.8017241379310345, 0.10344827586206896, 0.09482758620689655, 0.09482758620689655, 0.9224137931034483, 0.09482758620689655, 0.09482758620689655, 0.08620689655172414, 0.08620689655172414, 0.07758620689655173, 0.07758620689655173, 0.07758620689655173, 0.08620689655172414, 0.08620689655172414, 0.08620689655172414, 0.08620689655172414, 0.08620689655172414, 0.08620689655172414, 0.06896551724137931, 0.06896551724137931, 0.06896551724137931, 0.06896551724137931, 0.06896551724137931, 0.06896551724137931, 0.06896551724137931, 0.07758620689655173, 0.06896551724137931, 0.06896551724137931, 0.06896551724137931, 0.06896551724137931, 0.06896551724137931, 0.06896551724137931, 0.04310344827586207, 0.04310344827586207, 0.04310344827586207, 0.04310344827586207, 0.04310344827586207, 0.04310344827586207, 0.04310344827586207, 0.04310344827586207, 0.04310344827586207, 0.04310344827586207, 0.04310344827586207, 0.04310344827586207, 0.7844827586206896, 0.7931034482758621, 0.22413793103448276, 0.09482758620689655, 0.07758620689655173, 0.06896551724137931, 0.07758620689655173, 0.05172413793103448, 0.896551724137931, 0.896551724137931, 0.896551724137931, 0.9051724137931034, 0.9224137931034483, 0.9224137931034483, 0.9224137931034483, 0.9396551724137931, 0.9224137931034483, 0.9224137931034483, 0.9051724137931034, 0.896551724137931, 0.896551724137931, 0.896551724137931, 0.896551724137931, 0.09482758620689655, 0.08620689655172414, 0.15517241379310345, 0.07758620689655173, 0.05172413793103448, 0.034482758620689655, 0.034482758620689655, 0.034482758620689655, 0.034482758620689655, 0.034482758620689655, 0.034482758620689655, 0.034482758620689655, 0.034482758620689655, 0.034482758620689655, 0.034482758620689655, 0.034482758620689655, 0.034482758620689655, 0.034482758620689655, 0.034482758620689655, 0.034482758620689655, 0.034482758620689655, 0.034482758620689655, 0.034482758620689655, 0.034482758620689655, 0.034482758620689655, 0.034482758620689655, 0.034482758620689655, 0.034482758620689655, 0.034482758620689655, 0.034482758620689655, 0.034482758620689655, 0.034482758620689655, 0.8879310344827587, 0.896551724137931, 0.9310344827586207, 0.9396551724137931, 0.9482758620689655, 0.9482758620689655, 0.9482758620689655, 0.9482758620689655, 0.9482758620689655, 0.9482758620689655, 0.9482758620689655, 0.9482758620689655, 0.9482758620689655, 0.9482758620689655, 0.9482758620689655, 0.9396551724137931, 0.9310344827586207, 0.896551724137931, 0.8793103448275862, 0.034482758620689655, 0.05172413793103448, 0.6724137931034483, 0.23275862068965517, 0.07758620689655173, 0.05172413793103448, 0.04310344827586207, 0.04310344827586207, 0.05172413793103448, 0.05172413793103448, 0.05172413793103448, 0.05172413793103448, 0.05172413793103448, 0.05172413793103448, 0.05172413793103448, 0.05172413793103448, 0.05172413793103448, 0.05172413793103448, 0.05172413793103448, 0.05172413793103448, 0.05172413793103448, 0.0603448275862069, 0.0603448275862069, 0.0603448275862069, 0.0603448275862069, 0.0603448275862069, 0.0603448275862069, 0.0603448275862069, 0.06896551724137931, 0.10344827586206896, 0.11206896551724138, 0.8620689655172413, 0.896551724137931, 0.9051724137931034, 0.9051724137931034, 0.9310344827586207, 0.9310344827586207, 0.9396551724137931, 0.9396551724137931, 0.9396551724137931, 0.9396551724137931, 0.9396551724137931, 0.9396551724137931, 0.9396551724137931, 0.9396551724137931, 0.9396551724137931, 0.9396551724137931, 0.9310344827586207, 0.9310344827586207, 0.9051724137931034, 0.896551724137931, 0.8793103448275862, 0.8620689655172413, 0.1206896551724138, 0.10344827586206896, 0.10344827586206896, 0.10344827586206896, 0.10344827586206896, 0.10344827586206896, 0.10344827586206896, 0.10344827586206896, 0.10344827586206896, 0.10344827586206896, 0.10344827586206896, 0.10344827586206896, 0.10344827586206896, 0.11206896551724138, 0.11206896551724138, 0.11206896551724138, 0.11206896551724138, 0.12931034482758622, 0.12931034482758622, 0.12931034482758622, 0.13793103448275862, 0.25], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/TatC.gap.json b/pfam_gap_rates/TatC.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..17ec2079639cf6ae7d3c680addc2aeadde472edc
--- /dev/null
+++ b/pfam_gap_rates/TatC.gap.json
@@ -0,0 +1 @@
+{"family": "TatC", "n_seqs": 1564, "length": 247, "gap_rates": [0.358695652173913, 0.08248081841432225, 0.05754475703324808, 0.049872122762148335, 0.04539641943734015, 0.043478260869565216, 0.043478260869565216, 0.04283887468030691, 0.04219948849104859, 0.04156010230179028, 0.03900255754475703, 0.03900255754475703, 0.037723785166240406, 0.034526854219948847, 0.03324808184143223, 0.03324808184143223, 0.03260869565217391, 0.03132992327365729, 0.03132992327365729, 0.030690537084398978, 0.030690537084398978, 0.030690537084398978, 0.030690537084398978, 0.030690537084398978, 0.0319693094629156, 0.03260869565217391, 0.030690537084398978, 0.037723785166240406, 0.03900255754475703, 0.03964194373401535, 0.03516624040920716, 0.03260869565217391, 0.0370843989769821, 0.8823529411764706, 0.03516624040920716, 0.037723785166240406, 0.0370843989769821, 0.03900255754475703, 0.037723785166240406, 0.04475703324808184, 0.0639386189258312, 0.07672634271099744, 0.2538363171355499, 0.1489769820971867, 0.2979539641943734, 0.5505115089514067, 0.6336317135549873, 0.7416879795396419, 0.789002557544757, 0.8081841432225064, 0.8554987212276215, 0.8638107416879796, 0.8746803069053708, 0.887468030690537, 0.8938618925831202, 0.9002557544757033, 0.928388746803069, 0.8970588235294118, 0.889386189258312, 0.8797953964194374, 0.8702046035805626, 0.860613810741688, 0.8228900255754475, 0.7934782608695652, 0.7621483375959079, 0.7014066496163683, 0.5933503836317136, 0.319693094629156, 0.2826086956521739, 0.0792838874680307, 0.0479539641943734, 0.03132992327365729, 0.030690537084398978, 0.026214833759590793, 0.026214833759590793, 0.026214833759590793, 0.026214833759590793, 0.02557544757033248, 0.02557544757033248, 0.02557544757033248, 0.02557544757033248, 0.02557544757033248, 0.024296675191815855, 0.028132992327365727, 0.028132992327365727, 0.028132992327365727, 0.026854219948849106, 0.026854219948849106, 0.026214833759590793, 0.026214833759590793, 0.026214833759590793, 0.026214833759590793, 0.026854219948849106, 0.026854219948849106, 0.026214833759590793, 0.026214833759590793, 0.02557544757033248, 0.02557544757033248, 0.02557544757033248, 0.02557544757033248, 0.02557544757033248, 0.026214833759590793, 0.03644501278772379, 0.03644501278772379, 0.0370843989769821, 0.0370843989769821, 0.026854219948849106, 0.026854219948849106, 0.027493606138107418, 0.024936061381074168, 0.02557544757033248, 0.024936061381074168, 0.02557544757033248, 0.026854219948849106, 0.026854219948849106, 0.026214833759590793, 0.028132992327365727, 0.027493606138107418, 0.026854219948849106, 0.027493606138107418, 0.027493606138107418, 0.027493606138107418, 0.026854219948849106, 0.026854219948849106, 0.026854219948849106, 0.027493606138107418, 0.027493606138107418, 0.027493606138107418, 0.027493606138107418, 0.026214833759590793, 0.026214833759590793, 0.026214833759590793, 0.027493606138107418, 0.027493606138107418, 0.027493606138107418, 0.027493606138107418, 0.027493606138107418, 0.027493606138107418, 0.027493606138107418, 0.028132992327365727, 0.17838874680306904, 0.030051150895140665, 0.02877237851662404, 0.027493606138107418, 0.027493606138107418, 0.027493606138107418, 0.028132992327365727, 0.028132992327365727, 0.028132992327365727, 0.028132992327365727, 0.028132992327365727, 0.7608695652173914, 0.7960358056265985, 0.8650895140664961, 0.8976982097186701, 0.9162404092071611, 0.8759590792838875, 0.8516624040920716, 0.7659846547314578, 0.760230179028133, 0.030051150895140665, 0.32672634271099743, 0.8644501278772379, 0.3906649616368286, 0.3075447570332481, 0.052429667519181586, 0.053069053708439895, 0.030051150895140665, 0.9296675191815856, 0.8951406649616368, 0.026214833759590793, 0.02557544757033248, 0.021099744245524295, 0.021099744245524295, 0.020460358056265986, 0.020460358056265986, 0.019820971867007674, 0.019820971867007674, 0.01918158567774936, 0.01918158567774936, 0.01918158567774936, 0.01854219948849105, 0.01918158567774936, 0.01854219948849105, 0.01918158567774936, 0.01918158567774936, 0.01918158567774936, 0.01918158567774936, 0.01918158567774936, 0.01918158567774936, 0.01918158567774936, 0.019820971867007674, 0.019820971867007674, 0.019820971867007674, 0.01918158567774936, 0.01918158567774936, 0.019820971867007674, 0.019820971867007674, 0.019820971867007674, 0.019820971867007674, 0.019820971867007674, 0.020460358056265986, 0.021099744245524295, 0.021099744245524295, 0.021099744245524295, 0.021739130434782608, 0.023017902813299233, 0.023017902813299233, 0.024936061381074168, 0.021739130434782608, 0.021739130434782608, 0.021739130434782608, 0.021739130434782608, 0.021099744245524295, 0.021739130434782608, 0.021739130434782608, 0.021099744245524295, 0.021099744245524295, 0.021099744245524295, 0.02237851662404092, 0.023657289002557546, 0.023017902813299233, 0.023017902813299233, 0.023017902813299233, 0.023017902813299233, 0.023017902813299233, 0.023017902813299233, 0.023017902813299233, 0.023017902813299233, 0.023657289002557546, 0.023657289002557546, 0.023657289002557546, 0.024936061381074168, 0.027493606138107418, 0.6240409207161125, 0.030051150895140665, 0.026214833759590793, 0.027493606138107418, 0.027493606138107418, 0.028132992327365727, 0.028132992327365727, 0.030051150895140665, 0.0319693094629156, 0.0479539641943734, 0.07608695652173914, 0.16240409207161124, 0.20524296675191817], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Tau95.gap.json b/pfam_gap_rates/Tau95.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b0fb5871661d3267e715505ca9ce7a1fbe934900
--- /dev/null
+++ b/pfam_gap_rates/Tau95.gap.json
@@ -0,0 +1 @@
+{"family": "Tau95", "n_seqs": 355, "length": 463, "gap_rates": [0.6647887323943662, 0.3408450704225352, 0.27605633802816903, 0.27605633802816903, 0.2704225352112676, 0.2704225352112676, 0.2704225352112676, 0.2704225352112676, 0.2676056338028169, 0.2647887323943662, 0.8929577464788733, 0.9492957746478873, 0.8901408450704226, 0.2676056338028169, 0.2647887323943662, 0.2619718309859155, 0.2591549295774648, 0.2563380281690141, 0.2563380281690141, 0.2507042253521127, 0.2507042253521127, 0.2507042253521127, 0.24788732394366197, 0.2507042253521127, 0.24788732394366197, 0.24788732394366197, 0.24507042253521127, 0.24507042253521127, 0.24507042253521127, 0.24507042253521127, 0.24225352112676057, 0.2507042253521127, 0.24225352112676057, 0.24507042253521127, 0.23943661971830985, 0.23661971830985915, 0.23943661971830985, 0.24507042253521127, 0.323943661971831, 0.7464788732394366, 0.8507042253521127, 0.9014084507042254, 0.9352112676056338, 0.9408450704225352, 0.9436619718309859, 0.9492957746478873, 0.9436619718309859, 0.9380281690140845, 0.9267605633802817, 0.8929577464788733, 0.8394366197183099, 0.6591549295774648, 0.22253521126760564, 0.22253521126760564, 0.21971830985915494, 0.21971830985915494, 0.21971830985915494, 0.22535211267605634, 0.28169014084507044, 0.24225352112676057, 0.21971830985915494, 0.21690140845070421, 0.21690140845070421, 0.2140845070422535, 0.2140845070422535, 0.2140845070422535, 0.2140845070422535, 0.2112676056338028, 0.2084507042253521, 0.2056338028169014, 0.2056338028169014, 0.2056338028169014, 0.2056338028169014, 0.2084507042253521, 0.2056338028169014, 0.2056338028169014, 0.2056338028169014, 0.2056338028169014, 0.2084507042253521, 0.2028169014084507, 0.2028169014084507, 0.3352112676056338, 0.36901408450704226, 0.4422535211267606, 0.7859154929577464, 0.819718309859155, 0.8394366197183099, 0.8056338028169014, 0.7577464788732394, 0.2591549295774648, 0.2591549295774648, 0.24225352112676057, 0.2535211267605634, 0.6704225352112676, 0.6901408450704225, 0.7070422535211267, 0.7295774647887324, 0.752112676056338, 0.7690140845070422, 0.7746478873239436, 0.7830985915492957, 0.8028169014084507, 0.8140845070422535, 0.8366197183098592, 0.8535211267605634, 0.8676056338028169, 0.8732394366197183, 0.8873239436619719, 0.923943661971831, 0.9352112676056338, 0.9408450704225352, 0.9295774647887324, 0.8901408450704226, 0.8788732394366198, 0.8704225352112676, 0.8591549295774648, 0.8450704225352113, 0.8309859154929577, 0.8140845070422535, 0.7971830985915493, 0.7830985915492957, 0.7718309859154929, 0.752112676056338, 0.7464788732394366, 0.7183098591549296, 0.6957746478873239, 0.6816901408450704, 0.6647887323943662, 0.6281690140845071, 0.5943661971830986, 0.5633802816901409, 0.532394366197183, 0.49859154929577465, 0.4732394366197183, 0.4591549295774648, 0.4253521126760563, 0.39436619718309857, 0.36619718309859156, 0.3436619718309859, 0.27887323943661974, 0.2507042253521127, 0.19436619718309858, 0.18873239436619718, 0.18591549295774648, 0.18309859154929578, 0.17746478873239438, 0.17746478873239438, 0.17464788732394365, 0.17183098591549295, 0.16619718309859155, 0.16619718309859155, 0.16901408450704225, 0.17183098591549295, 0.17183098591549295, 0.17464788732394365, 0.17183098591549295, 0.17183098591549295, 0.17183098591549295, 0.17183098591549295, 0.17464788732394365, 0.17464788732394365, 0.16901408450704225, 0.17183098591549295, 0.17183098591549295, 0.16901408450704225, 0.16901408450704225, 0.16901408450704225, 0.17464788732394365, 0.16901408450704225, 0.16901408450704225, 0.7352112676056338, 0.7774647887323943, 0.8507042253521127, 0.8732394366197183, 0.923943661971831, 0.9323943661971831, 0.9380281690140845, 0.9464788732394366, 0.9408450704225352, 0.9352112676056338, 0.9267605633802817, 0.9042253521126761, 0.8619718309859155, 0.8056338028169014, 0.7492957746478873, 0.7211267605633803, 0.23098591549295774, 0.2704225352112676, 0.2563380281690141, 0.9323943661971831, 0.9408450704225352, 0.9211267605633803, 0.23380281690140844, 0.23380281690140844, 0.21971830985915494, 0.23380281690140844, 0.2140845070422535, 0.2084507042253521, 0.2, 0.2028169014084507, 0.2028169014084507, 0.9295774647887324, 0.2140845070422535, 0.2084507042253521, 0.2112676056338028, 0.21971830985915494, 0.38873239436619716, 0.48732394366197185, 0.5492957746478874, 0.6084507042253521, 0.8169014084507042, 0.9098591549295775, 0.9492957746478873, 0.8901408450704226, 0.6535211267605634, 0.5802816901408451, 0.5126760563380282, 0.4704225352112676, 0.37183098591549296, 0.3436619718309859, 0.3464788732394366, 0.8028169014084507, 0.8056338028169014, 0.8169014084507042, 0.828169014084507, 0.8676056338028169, 0.8760563380281691, 0.8901408450704226, 0.895774647887324, 0.8985915492957747, 0.8985915492957747, 0.9042253521126761, 0.9126760563380282, 0.9295774647887324, 0.9323943661971831, 0.9408450704225352, 0.9380281690140845, 0.9295774647887324, 0.923943661971831, 0.9042253521126761, 0.9042253521126761, 0.8985915492957747, 0.895774647887324, 0.8901408450704226, 0.8845070422535212, 0.8704225352112676, 0.8535211267605634, 0.8253521126760563, 0.8084507042253521, 0.8056338028169014, 0.8028169014084507, 0.2619718309859155, 0.23943661971830985, 0.22253521126760564, 0.19718309859154928, 0.18591549295774648, 0.18309859154929578, 0.17746478873239438, 0.17746478873239438, 0.17464788732394365, 0.15774647887323945, 0.15492957746478872, 0.15492957746478872, 0.16056338028169015, 0.16056338028169015, 0.16056338028169015, 0.16056338028169015, 0.16056338028169015, 0.16056338028169015, 0.16338028169014085, 0.16338028169014085, 0.16338028169014085, 0.16338028169014085, 0.18591549295774648, 0.18309859154929578, 0.18591549295774648, 0.18028169014084508, 0.17746478873239438, 0.16901408450704225, 0.17183098591549295, 0.16901408450704225, 0.16338028169014085, 0.16338028169014085, 0.16338028169014085, 0.16056338028169015, 0.16056338028169015, 0.16338028169014085, 0.16338028169014085, 0.5746478873239437, 0.780281690140845, 0.9014084507042254, 0.9126760563380282, 0.9267605633802817, 0.9295774647887324, 0.9436619718309859, 0.9464788732394366, 0.9492957746478873, 0.9464788732394366, 0.9352112676056338, 0.9267605633802817, 0.9183098591549296, 0.9070422535211268, 0.8816901408450705, 0.7549295774647887, 0.4450704225352113, 0.49295774647887325, 0.39436619718309857, 0.38591549295774646, 0.3464788732394366, 0.8253521126760563, 0.9408450704225352, 0.9492957746478873, 0.9098591549295775, 0.8169014084507042, 0.3267605633802817, 0.27887323943661974, 0.23661971830985915, 0.22816901408450704, 0.2140845070422535, 0.2112676056338028, 0.2084507042253521, 0.23661971830985915, 0.23661971830985915, 0.2028169014084507, 0.19718309859154928, 0.2, 0.19718309859154928, 0.19436619718309858, 0.2, 0.2, 0.2028169014084507, 0.19718309859154928, 0.3267605633802817, 0.36901408450704226, 0.36056338028169016, 0.18873239436619718, 0.4169014084507042, 0.8253521126760563, 0.8760563380281691, 0.895774647887324, 0.9183098591549296, 0.9295774647887324, 0.9464788732394366, 0.9380281690140845, 0.923943661971831, 0.9098591549295775, 0.8873239436619719, 0.8647887323943662, 0.7464788732394366, 0.27323943661971833, 0.17183098591549295, 0.9183098591549296, 0.15774647887323945, 0.14929577464788732, 0.14929577464788732, 0.16056338028169015, 0.15774647887323945, 0.14366197183098592, 0.14084507042253522, 0.14084507042253522, 0.14647887323943662, 0.15492957746478872, 0.29295774647887324, 0.3183098591549296, 0.5154929577464789, 0.447887323943662, 0.8647887323943662, 0.923943661971831, 0.9323943661971831, 0.9323943661971831, 0.9380281690140845, 0.9408450704225352, 0.9323943661971831, 0.9323943661971831, 0.9295774647887324, 0.8676056338028169, 0.8338028169014085, 0.17183098591549295, 0.15211267605633802, 0.14366197183098592, 0.13802816901408452, 0.1352112676056338, 0.1267605633802817, 0.1323943661971831, 0.1352112676056338, 0.2112676056338028, 0.17464788732394365, 0.16901408450704225, 0.11267605633802817, 0.11267605633802817, 0.11267605633802817, 0.11267605633802817, 0.11267605633802817, 0.11267605633802817, 0.11267605633802817, 0.11549295774647887, 0.11549295774647887, 0.11549295774647887, 0.11549295774647887, 0.11549295774647887, 0.11549295774647887, 0.11549295774647887, 0.11549295774647887, 0.11549295774647887, 0.11549295774647887, 0.11830985915492957, 0.11549295774647887, 0.9154929577464789, 0.11549295774647887, 0.12394366197183099, 0.11549295774647887, 0.11549295774647887, 0.6281690140845071, 0.8084507042253521, 0.9380281690140845, 0.9267605633802817, 0.7098591549295775, 0.5577464788732395, 0.30140845070422534, 0.11830985915492957, 0.11267605633802817, 0.11267605633802817, 0.11549295774647887, 0.10985915492957747, 0.10422535211267606, 0.10422535211267606, 0.10422535211267606, 0.10140845070422536, 0.10140845070422536, 0.10140845070422536, 0.10140845070422536, 0.10140845070422536, 0.10140845070422536, 0.10704225352112676, 0.10704225352112676, 0.10704225352112676, 0.10704225352112676, 0.10704225352112676, 0.10422535211267606, 0.10704225352112676, 0.10704225352112676, 0.10704225352112676, 0.10704225352112676, 0.10985915492957747, 0.10985915492957747, 0.10985915492957747, 0.10985915492957747, 0.10985915492957747, 0.10985915492957747, 0.10985915492957747, 0.11267605633802817, 0.11830985915492957, 0.11830985915492957, 0.12112676056338029, 0.12394366197183099, 0.1267605633802817, 0.1352112676056338, 0.1323943661971831, 0.13802816901408452, 0.14647887323943662, 0.16901408450704225, 0.2028169014084507, 0.3154929577464789], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Tautomerase_2.gap.json b/pfam_gap_rates/Tautomerase_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..7b6899c0f35f29537d87d4bbcd234e2d0a0057a6
--- /dev/null
+++ b/pfam_gap_rates/Tautomerase_2.gap.json
@@ -0,0 +1 @@
+{"family": "Tautomerase_2", "n_seqs": 246, "length": 82, "gap_rates": [0.07723577235772358, 0.056910569105691054, 0.032520325203252036, 0.032520325203252036, 0.028455284552845527, 0.028455284552845527, 0.028455284552845527, 0.032520325203252036, 0.028455284552845527, 0.02032520325203252, 0.02032520325203252, 0.02032520325203252, 0.02032520325203252, 0.02032520325203252, 0.02032520325203252, 0.02032520325203252, 0.02032520325203252, 0.06097560975609756, 0.32113821138211385, 0.2845528455284553, 0.2886178861788618, 0.24796747967479674, 0.23983739837398374, 0.04065040650406504, 0.016260162601626018, 0.02032520325203252, 0.016260162601626018, 0.02032520325203252, 0.012195121951219513, 0.008130081300813009, 0.0040650406504065045, 0.0040650406504065045, 0.0040650406504065045, 0.0040650406504065045, 0.0040650406504065045, 0.0040650406504065045, 0.0040650406504065045, 0.3252032520325203, 0.0040650406504065045, 0.0040650406504065045, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.14634146341463414, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0040650406504065045, 0.0040650406504065045, 0.0040650406504065045, 0.0040650406504065045, 0.0040650406504065045, 0.0040650406504065045, 0.0040650406504065045, 0.012195121951219513, 0.02032520325203252, 0.09349593495934959], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/TerD.gap.json b/pfam_gap_rates/TerD.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..5a5484bb8037b407a86aeff4b1e4d9f4fc6db72d
--- /dev/null
+++ b/pfam_gap_rates/TerD.gap.json
@@ -0,0 +1 @@
+{"family": "TerD", "n_seqs": 1091, "length": 202, "gap_rates": [0.40879926672777267, 0.39321723189734187, 0.29422548120989916, 0.2612282309807516, 0.21356553620531624, 0.20439963336388633, 0.20256645279560037, 0.20073327222731438, 0.19890009165902842, 0.19615032080659944, 0.19615032080659944, 0.1915673693858845, 0.18973418881759854, 0.2080659945004583, 0.21173235563703025, 0.8872593950504125, 0.32630614115490375, 0.2887259395050413, 0.28230980751604035, 0.2236480293308891, 0.21081576535288726, 0.13748854262144822, 0.13382218148487626, 0.12832263978001834, 0.12557286892758937, 0.12190650779101742, 0.11824014665444546, 0.11732355637030248, 0.1145737855178735, 0.1145737855178735, 0.13473877176901924, 0.15123739688359303, 0.25572868927589365, 0.29605866177818513, 0.3125572868927589, 0.7910174152153987, 0.7965169569202566, 0.8047662694775435, 0.8652612282309807, 0.9129239230064161, 0.9376718606782768, 0.8991750687442713, 0.847846012832264, 0.8001833180568286, 0.7946837763519706, 0.6223648029330889, 0.27497708524289644, 0.1622364802933089, 0.11274060494958753, 0.08615948670944087, 0.076076993583868, 0.05957836846929423, 0.04216315307057745, 0.04124656278643447, 0.04216315307057745, 0.04032997250229148, 0.04032997250229148, 0.04032997250229148, 0.04032997250229148, 0.043996333638863426, 0.11274060494958753, 0.045829514207149404, 0.043996333638863426, 0.04674610449129239, 0.05041246562786435, 0.05591200733272227, 0.09074243813015583, 0.19615032080659944, 0.1851512373968836, 0.17048579285059579, 0.04307974335472044, 0.05774518790100825, 0.04674610449129239, 0.043996333638863426, 0.04032997250229148, 0.035747021081576534, 0.04766269477543538, 0.03941338221814849, 0.03666361136571952, 0.03666361136571952, 0.04032997250229148, 0.09899175068744272, 0.08982584784601283, 0.04307974335472044, 0.0384967919340055, 0.04124656278643447, 0.04216315307057745, 0.044912923923006415, 0.04766269477543538, 0.07882676443629698, 0.10724106324472961, 0.12190650779101742, 0.21173235563703025, 0.20348304307974335, 0.21264894592117323, 0.2612282309807516, 0.21814848762603117, 0.10632447296058661, 0.0925756186984418, 0.06966086159486709, 0.04124656278643447, 0.017415215398716773, 0.017415215398716773, 0.015582034830430797, 0.015582034830430797, 0.015582034830430797, 0.015582034830430797, 0.015582034830430797, 0.01466544454628781, 0.015582034830430797, 0.015582034830430797, 0.01833180568285976, 0.015582034830430797, 0.01833180568285976, 0.01466544454628781, 0.013748854262144821, 0.01466544454628781, 0.01466544454628781, 0.01466544454628781, 0.01466544454628781, 0.01466544454628781, 0.015582034830430797, 0.015582034830430797, 0.015582034830430797, 0.15582034830430797, 0.3913840513290559, 0.38038496791934007, 0.32630614115490375, 0.27039413382218147, 0.0384967919340055, 0.02933088909257562, 0.02474793767186068, 0.026581118240146653, 0.027497708524289642, 0.027497708524289642, 0.032080659945004586, 0.034830430797433545, 0.0384967919340055, 0.03941338221814849, 0.032080659945004586, 0.02933088909257562, 0.03024747937671861, 0.03024747937671861, 0.03666361136571952, 0.10449129239230064, 0.15582034830430797, 0.076076993583868, 0.06782768102658111, 0.10540788267644363, 0.05774518790100825, 0.05041246562786435, 0.043996333638863426, 0.04124656278643447, 0.03758020164986251, 0.03666361136571952, 0.03666361136571952, 0.035747021081576534, 0.03758020164986251, 0.8918423464711274, 0.19798350137488543, 0.051329055912007336, 0.0384967919340055, 0.04307974335472044, 0.11915673693858846, 0.034830430797433545, 0.034830430797433545, 0.032080659945004586, 0.032080659945004586, 0.032080659945004586, 0.032080659945004586, 0.032080659945004586, 0.03391384051329056, 0.03391384051329056, 0.034830430797433545, 0.035747021081576534, 0.9477543538038496, 0.03941338221814849, 0.04124656278643447, 0.04216315307057745, 0.06324472960586618, 0.043996333638863426, 0.043996333638863426, 0.044912923923006415, 0.04857928505957837, 0.05316223648029331, 0.054995417048579284, 0.05591200733272227, 0.05591200733272227, 0.07241063244729606, 0.07882676443629698, 0.08890925756186985, 0.1154903758020165, 0.1622364802933089, 0.9010082493125573, 0.19615032080659944, 0.1998166819431714, 0.20623281393217233, 0.21173235563703025, 0.22181484876260313, 0.2383134738771769, 0.26306141154903756, 0.2832263978001833], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/TetR_N.gap.json b/pfam_gap_rates/TetR_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..4232a3c2f1bcd4b2160d0171c176062903298d86
--- /dev/null
+++ b/pfam_gap_rates/TetR_N.gap.json
@@ -0,0 +1 @@
+{"family": "TetR_N", "n_seqs": 5000, "length": 47, "gap_rates": [0.3544, 0.2086, 0.1382, 0.1064, 0.0922, 0.0696, 0.051, 0.0424, 0.0368, 0.0326, 0.0332, 0.0256, 0.0236, 0.0206, 0.0156, 0.0566, 0.0104, 0.0078, 0.0012, 0.0008, 0.0008, 0.0006, 0.0004, 0.0002, 0.0002, 0.0, 0.0, 0.0002, 0.0004, 0.0004, 0.0004, 0.0004, 0.0006, 0.0014, 0.002, 0.0024, 0.0074, 0.0084, 0.0136, 0.0246, 0.027, 0.0324, 0.0488, 0.0862, 0.1722, 0.3512, 0.5514], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Tfb4.gap.json b/pfam_gap_rates/Tfb4.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..4286b691b245d2963c70a8dc6f0875dd65715df7
--- /dev/null
+++ b/pfam_gap_rates/Tfb4.gap.json
@@ -0,0 +1 @@
+{"family": "Tfb4", "n_seqs": 356, "length": 354, "gap_rates": [0.6601123595505618, 0.39325842696629215, 0.33707865168539325, 0.31741573033707865, 0.3146067415730337, 0.31179775280898875, 0.31179775280898875, 0.3089887640449438, 0.3089887640449438, 0.3089887640449438, 0.3089887640449438, 0.3089887640449438, 0.3061797752808989, 0.3061797752808989, 0.3061797752808989, 0.3089887640449438, 0.3061797752808989, 0.29775280898876405, 0.29213483146067415, 0.36235955056179775, 0.34831460674157305, 0.6910112359550562, 0.797752808988764, 0.8764044943820225, 0.9213483146067416, 0.9325842696629213, 0.8932584269662921, 0.8426966292134831, 0.7106741573033708, 0.6657303370786517, 0.3061797752808989, 0.300561797752809, 0.29213483146067415, 0.29213483146067415, 0.29213483146067415, 0.29213483146067415, 0.2893258426966292, 0.28370786516853935, 0.2808988764044944, 0.2696629213483146, 0.2696629213483146, 0.2696629213483146, 0.26685393258426965, 0.26685393258426965, 0.26685393258426965, 0.26685393258426965, 0.26685393258426965, 0.26685393258426965, 0.26685393258426965, 0.26685393258426965, 0.26685393258426965, 0.26685393258426965, 0.26685393258426965, 0.2640449438202247, 0.2640449438202247, 0.2640449438202247, 0.2640449438202247, 0.2640449438202247, 0.2612359550561798, 0.2612359550561798, 0.2612359550561798, 0.2612359550561798, 0.2640449438202247, 0.2640449438202247, 0.2640449438202247, 0.26685393258426965, 0.26685393258426965, 0.26685393258426965, 0.26685393258426965, 0.26685393258426965, 0.26685393258426965, 0.26685393258426965, 0.26685393258426965, 0.26685393258426965, 0.6460674157303371, 0.7949438202247191, 0.8370786516853933, 0.8792134831460674, 0.9157303370786517, 0.9297752808988764, 0.9438202247191011, 0.9325842696629213, 0.9269662921348315, 0.9101123595505618, 0.8539325842696629, 0.8230337078651685, 0.7640449438202247, 0.6207865168539326, 0.6460674157303371, 0.6095505617977528, 0.5674157303370787, 0.5561797752808989, 0.5196629213483146, 0.4606741573033708, 0.4101123595505618, 0.37640449438202245, 0.3651685393258427, 0.35674157303370785, 0.36797752808988765, 0.35674157303370785, 0.3792134831460674, 0.38764044943820225, 0.38764044943820225, 0.398876404494382, 0.8651685393258427, 0.8735955056179775, 0.8876404494382022, 0.9101123595505618, 0.9241573033707865, 0.9410112359550562, 0.9466292134831461, 0.9325842696629213, 0.9213483146067416, 0.898876404494382, 0.8820224719101124, 0.8707865168539326, 0.8651685393258427, 0.32865168539325845, 0.3146067415730337, 0.3061797752808989, 0.300561797752809, 0.300561797752809, 0.3061797752808989, 0.300561797752809, 0.28651685393258425, 0.27808988764044945, 0.27247191011235955, 0.2640449438202247, 0.2556179775280899, 0.25280898876404495, 0.24719101123595505, 0.2556179775280899, 0.2556179775280899, 0.2556179775280899, 0.25842696629213485, 0.2556179775280899, 0.2443820224719101, 0.2443820224719101, 0.24719101123595505, 0.24157303370786518, 0.23876404494382023, 0.23876404494382023, 0.2303370786516854, 0.23876404494382023, 0.23876404494382023, 0.23876404494382023, 0.25, 0.2893258426966292, 0.33707865168539325, 0.5926966292134831, 0.5028089887640449, 0.2443820224719101, 0.21910112359550563, 0.21910112359550563, 0.22191011235955055, 0.22191011235955055, 0.21910112359550563, 0.21910112359550563, 0.21910112359550563, 0.21910112359550563, 0.21910112359550563, 0.21910112359550563, 0.21910112359550563, 0.21629213483146068, 0.21348314606741572, 0.21629213483146068, 0.21629213483146068, 0.21629213483146068, 0.28370786516853935, 0.22752808988764045, 0.2303370786516854, 0.2443820224719101, 0.26685393258426965, 0.4747191011235955, 0.5449438202247191, 0.5280898876404494, 0.6769662921348315, 0.6825842696629213, 0.6966292134831461, 0.7219101123595506, 0.7331460674157303, 0.7415730337078652, 0.75, 0.797752808988764, 0.8174157303370787, 0.8455056179775281, 0.8735955056179775, 0.8792134831460674, 0.8876404494382022, 0.901685393258427, 0.9157303370786517, 0.9325842696629213, 0.9382022471910112, 0.9269662921348315, 0.9129213483146067, 0.8904494382022472, 0.8820224719101124, 0.8735955056179775, 0.8623595505617978, 0.8342696629213483, 0.8033707865168539, 0.7752808988764045, 0.7443820224719101, 0.7415730337078652, 0.7219101123595506, 0.7134831460674157, 0.6938202247191011, 0.6797752808988764, 0.6685393258426966, 0.29775280898876405, 0.21629213483146068, 0.21348314606741572, 0.19662921348314608, 0.19382022471910113, 0.19382022471910113, 0.19382022471910113, 0.19101123595505617, 0.19101123595505617, 0.8539325842696629, 0.8904494382022472, 0.2050561797752809, 0.19662921348314608, 0.199438202247191, 0.199438202247191, 0.199438202247191, 0.2050561797752809, 0.2050561797752809, 0.20786516853932585, 0.20224719101123595, 0.199438202247191, 0.19662921348314608, 0.19662921348314608, 0.19662921348314608, 0.19382022471910113, 0.18258426966292135, 0.1797752808988764, 0.1797752808988764, 0.18258426966292135, 0.18258426966292135, 0.18258426966292135, 0.1797752808988764, 0.17696629213483145, 0.17415730337078653, 0.17415730337078653, 0.16853932584269662, 0.17415730337078653, 0.17696629213483145, 0.17696629213483145, 0.17696629213483145, 0.1797752808988764, 0.18258426966292135, 0.18258426966292135, 0.17696629213483145, 0.19662921348314608, 0.21910112359550563, 0.9044943820224719, 0.6207865168539326, 0.20224719101123595, 0.19101123595505617, 0.19101123595505617, 0.19101123595505617, 0.19101123595505617, 0.19101123595505617, 0.18820224719101122, 0.18820224719101122, 0.19101123595505617, 0.19101123595505617, 0.19382022471910113, 0.19382022471910113, 0.19101123595505617, 0.19382022471910113, 0.19382022471910113, 0.20224719101123595, 0.20224719101123595, 0.21067415730337077, 0.21629213483146068, 0.21629213483146068, 0.20786516853932585, 0.9073033707865169, 0.9325842696629213, 0.9466292134831461, 0.9382022471910112, 0.9185393258426966, 0.901685393258427, 0.21629213483146068, 0.21910112359550563, 0.21629213483146068, 0.21629213483146068, 0.21629213483146068, 0.21629213483146068, 0.21910112359550563, 0.21629213483146068, 0.21348314606741572, 0.22191011235955055, 0.22752808988764045, 0.2303370786516854, 0.24157303370786518, 0.2443820224719101, 0.25, 0.25, 0.25, 0.24719101123595505, 0.24157303370786518, 0.23876404494382023, 0.23595505617977527, 0.23595505617977527, 0.23314606741573032, 0.2303370786516854, 0.22752808988764045, 0.22191011235955055, 0.2247191011235955, 0.2247191011235955, 0.2247191011235955, 0.2247191011235955, 0.21910112359550563, 0.21629213483146068, 0.21629213483146068, 0.21629213483146068, 0.21629213483146068, 0.21910112359550563, 0.21910112359550563, 0.21910112359550563, 0.22191011235955055, 0.22191011235955055, 0.22191011235955055, 0.22191011235955055, 0.22191011235955055, 0.22191011235955055, 0.21910112359550563, 0.21910112359550563, 0.21910112359550563, 0.2247191011235955, 0.22752808988764045, 0.23314606741573032, 0.24157303370786518, 0.24157303370786518, 0.24157303370786518, 0.2443820224719101, 0.2556179775280899, 0.2556179775280899, 0.2556179775280899, 0.25842696629213485, 0.25842696629213485, 0.7078651685393258, 0.25842696629213485, 0.3342696629213483, 0.7162921348314607, 0.702247191011236, 0.4803370786516854, 0.2752808988764045, 0.27808988764044945, 0.2808988764044944, 0.28370786516853935, 0.4297752808988764], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/TfoX_N.gap.json b/pfam_gap_rates/TfoX_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..6c439e43f244d2c7e6328b6ccf5952b5b4c90a58
--- /dev/null
+++ b/pfam_gap_rates/TfoX_N.gap.json
@@ -0,0 +1 @@
+{"family": "TfoX_N", "n_seqs": 536, "length": 98, "gap_rates": [0.5671641791044776, 0.3843283582089552, 0.27611940298507465, 0.24253731343283583, 0.22201492537313433, 0.1958955223880597, 0.13432835820895522, 0.08768656716417911, 0.06343283582089553, 0.04664179104477612, 0.04291044776119403, 0.03917910447761194, 0.03544776119402985, 0.014925373134328358, 0.014925373134328358, 0.014925373134328358, 0.014925373134328358, 0.013059701492537313, 0.013059701492537313, 0.013059701492537313, 0.011194029850746268, 0.009328358208955223, 0.009328358208955223, 0.009328358208955223, 0.009328358208955223, 0.005597014925373134, 0.005597014925373134, 0.005597014925373134, 0.0037313432835820895, 0.0037313432835820895, 0.0037313432835820895, 0.0018656716417910447, 0.8190298507462687, 0.0018656716417910447, 0.0018656716417910447, 0.0, 0.0, 0.0, 0.0018656716417910447, 0.0018656716417910447, 0.0018656716417910447, 0.0037313432835820895, 0.0037313432835820895, 0.0037313432835820895, 0.005597014925373134, 0.005597014925373134, 0.007462686567164179, 0.009328358208955223, 0.009328358208955223, 0.018656716417910446, 0.018656716417910446, 0.016791044776119403, 0.020522388059701493, 0.022388059701492536, 0.4626865671641791, 0.05223880597014925, 0.04291044776119403, 0.048507462686567165, 0.05783582089552239, 0.061567164179104475, 0.9085820895522388, 0.13992537313432835, 0.14925373134328357, 0.5279850746268657, 0.667910447761194, 0.6604477611940298, 0.5410447761194029, 0.39738805970149255, 0.376865671641791, 0.9440298507462687, 0.75, 0.2947761194029851, 0.27238805970149255, 0.2593283582089552, 0.2537313432835821, 0.24813432835820895, 0.25, 0.25, 0.27425373134328357, 0.28171641791044777, 0.2873134328358209, 0.27425373134328357, 0.2667910447761194, 0.26119402985074625, 0.2667910447761194, 0.27611940298507465, 0.26119402985074625, 0.26119402985074625, 0.26492537313432835, 0.26492537313432835, 0.26865671641791045, 0.27425373134328357, 0.28171641791044777, 0.30783582089552236, 0.36380597014925375, 0.43470149253731344, 0.6473880597014925, 0.7779850746268657], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Thiolase_C.gap.json b/pfam_gap_rates/Thiolase_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f304233509c4c171b53f7876b265f7289351c43f
--- /dev/null
+++ b/pfam_gap_rates/Thiolase_C.gap.json
@@ -0,0 +1 @@
+{"family": "Thiolase_C", "n_seqs": 5000, "length": 141, "gap_rates": [0.7998, 0.326, 0.2082, 0.187, 0.1788, 0.1684, 0.1638, 0.1616, 0.1592, 0.1576, 0.1552, 0.152, 0.1492, 0.1464, 0.1444, 0.141, 0.136, 0.1334, 0.1306, 0.1288, 0.128, 0.1228, 0.1146, 0.1088, 0.086, 0.0504, 0.033, 0.028, 0.0234, 0.0204, 0.0194, 0.0186, 0.0182, 0.0174, 0.017, 0.017, 0.0174, 0.0158, 0.0146, 0.014, 0.0138, 0.0132, 0.0122, 0.0116, 0.0108, 0.0104, 0.0102, 0.0108, 0.0104, 0.0102, 0.0102, 0.0098, 0.0102, 0.0104, 0.0108, 0.0104, 0.0102, 0.0102, 0.0104, 0.0106, 0.0106, 0.0106, 0.0102, 0.0098, 0.0096, 0.0102, 0.6962, 0.777, 0.7896, 0.794, 0.8038, 0.805, 0.8056, 0.8066, 0.8664, 0.8102, 0.806, 0.8054, 0.8046, 0.8038, 0.7932, 0.7846, 0.7588, 0.6932, 0.0108, 0.01, 0.0098, 0.0098, 0.0094, 0.0098, 0.0096, 0.0098, 0.0098, 0.0098, 0.01, 0.01, 0.0098, 0.0096, 0.0098, 0.017, 0.0098, 0.0094, 0.0096, 0.0104, 0.011, 0.011, 0.0108, 0.0108, 0.0112, 0.0114, 0.012, 0.0124, 0.0126, 0.0132, 0.0146, 0.0172, 0.0294, 0.0788, 0.0856, 0.0576, 0.0662, 0.0772, 0.084, 0.09, 0.1076, 0.116, 0.1204, 0.1258, 0.127, 0.1286, 0.1328, 0.1378, 0.1414, 0.1456, 0.1494, 0.1518, 0.1548, 0.1594, 0.1738, 0.2262, 0.613], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Thioredoxin_5.gap.json b/pfam_gap_rates/Thioredoxin_5.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..af4dde2bdb72d77a76569faf53810f90615bbec2
--- /dev/null
+++ b/pfam_gap_rates/Thioredoxin_5.gap.json
@@ -0,0 +1 @@
+{"family": "Thioredoxin_5", "n_seqs": 261, "length": 204, "gap_rates": [0.367816091954023, 0.2413793103448276, 0.1839080459770115, 0.13409961685823754, 0.10344827586206896, 0.10344827586206896, 0.0842911877394636, 0.08045977011494253, 0.08045977011494253, 0.07662835249042145, 0.07662835249042145, 0.07662835249042145, 0.07279693486590039, 0.06513409961685823, 0.06513409961685823, 0.06513409961685823, 0.06513409961685823, 0.06130268199233716, 0.06130268199233716, 0.06130268199233716, 0.06130268199233716, 0.06130268199233716, 0.06130268199233716, 0.05747126436781609, 0.06513409961685823, 0.06130268199233716, 0.06130268199233716, 0.06896551724137931, 0.06130268199233716, 0.05747126436781609, 0.05747126436781609, 0.05747126436781609, 0.05747126436781609, 0.05747126436781609, 0.05747126436781609, 0.05747126436781609, 0.05747126436781609, 0.05747126436781609, 0.06130268199233716, 0.06130268199233716, 0.06130268199233716, 0.06130268199233716, 0.06130268199233716, 0.06130268199233716, 0.06513409961685823, 0.06513409961685823, 0.06513409961685823, 0.06896551724137931, 0.39846743295019155, 0.39846743295019155, 0.42911877394636017, 0.4444444444444444, 0.3946360153256705, 0.421455938697318, 0.4329501915708812, 0.44061302681992337, 0.5938697318007663, 0.8084291187739464, 0.8505747126436781, 0.9272030651340997, 0.9272030651340997, 0.9118773946360154, 0.8199233716475096, 0.6934865900383141, 0.47509578544061304, 0.4367816091954023, 0.42528735632183906, 0.421455938697318, 0.3716475095785441, 0.36398467432950193, 0.36015325670498083, 0.22988505747126436, 0.210727969348659, 0.10344827586206896, 0.09578544061302682, 0.08812260536398467, 0.0842911877394636, 0.08045977011494253, 0.06896551724137931, 0.08812260536398467, 0.11877394636015326, 0.8697318007662835, 0.6704980842911877, 0.10344827586206896, 0.08045977011494253, 0.07279693486590039, 0.05363984674329502, 0.04597701149425287, 0.03065134099616858, 0.034482758620689655, 0.034482758620689655, 0.034482758620689655, 0.03065134099616858, 0.019157088122605363, 0.019157088122605363, 0.01532567049808429, 0.01532567049808429, 0.011494252873563218, 0.01532567049808429, 0.01532567049808429, 0.01532567049808429, 0.019157088122605363, 0.01532567049808429, 0.01532567049808429, 0.011494252873563218, 0.019157088122605363, 0.01532567049808429, 0.019157088122605363, 0.0421455938697318, 0.0421455938697318, 0.03065134099616858, 0.034482758620689655, 0.02681992337164751, 0.011494252873563218, 0.007662835249042145, 0.007662835249042145, 0.007662835249042145, 0.007662835249042145, 0.011494252873563218, 0.011494252873563218, 0.038314176245210725, 0.019157088122605363, 0.007662835249042145, 0.011494252873563218, 0.007662835249042145, 0.007662835249042145, 0.007662835249042145, 0.007662835249042145, 0.007662835249042145, 0.2950191570881226, 0.007662835249042145, 0.007662835249042145, 0.007662835249042145, 0.007662835249042145, 0.007662835249042145, 0.007662835249042145, 0.007662835249042145, 0.007662835249042145, 0.007662835249042145, 0.007662835249042145, 0.007662835249042145, 0.007662835249042145, 0.007662835249042145, 0.007662835249042145, 0.007662835249042145, 0.007662835249042145, 0.007662835249042145, 0.011494252873563218, 0.011494252873563218, 0.011494252873563218, 0.011494252873563218, 0.011494252873563218, 0.01532567049808429, 0.01532567049808429, 0.08812260536398467, 0.01532567049808429, 0.01532567049808429, 0.01532567049808429, 0.01532567049808429, 0.01532567049808429, 0.01532567049808429, 0.01532567049808429, 0.01532567049808429, 0.02681992337164751, 0.02681992337164751, 0.02681992337164751, 0.02681992337164751, 0.02681992337164751, 0.03065134099616858, 0.03065134099616858, 0.034482758620689655, 0.03065134099616858, 0.03065134099616858, 0.03065134099616858, 0.03065134099616858, 0.03065134099616858, 0.03065134099616858, 0.03065134099616858, 0.038314176245210725, 0.04597701149425287, 0.0842911877394636, 0.11494252873563218, 0.9080459770114943, 0.3448275862068966, 0.36015325670498083, 0.23754789272030652, 0.21839080459770116, 0.22988505747126436, 0.23754789272030652, 0.2567049808429119, 0.26053639846743293, 0.26053639846743293, 0.26436781609195403, 0.2681992337164751, 0.2720306513409962, 0.28735632183908044, 0.3103448275862069, 0.3333333333333333, 0.36398467432950193, 0.3831417624521073, 0.4099616858237548, 0.47126436781609193, 0.5402298850574713, 0.8582375478927203], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Thioredoxin_7.gap.json b/pfam_gap_rates/Thioredoxin_7.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..65a3b6b4cad718517f883d0aa8f340aef0a04cbd
--- /dev/null
+++ b/pfam_gap_rates/Thioredoxin_7.gap.json
@@ -0,0 +1 @@
+{"family": "Thioredoxin_7", "n_seqs": 1464, "length": 104, "gap_rates": [0.8995901639344263, 0.6837431693989071, 0.630464480874317, 0.5300546448087432, 0.36065573770491804, 0.22540983606557377, 0.1598360655737705, 0.1290983606557377, 0.1092896174863388, 0.0942622950819672, 0.07650273224043716, 0.06693989071038252, 0.056010928961748634, 0.04781420765027322, 0.031420765027322405, 0.015710382513661202, 0.009562841530054645, 0.006147540983606557, 0.00546448087431694, 0.004098360655737705, 0.001366120218579235, 0.001366120218579235, 0.001366120218579235, 0.001366120218579235, 0.9460382513661202, 0.001366120218579235, 0.001366120218579235, 0.0020491803278688526, 0.001366120218579235, 0.0020491803278688526, 0.001366120218579235, 0.001366120218579235, 0.001366120218579235, 0.0006830601092896175, 0.0006830601092896175, 0.0, 0.001366120218579235, 0.00273224043715847, 0.0020491803278688526, 0.00273224043715847, 0.0020491803278688526, 0.0034153005464480873, 0.0020491803278688526, 0.02117486338797814, 0.006830601092896175, 0.004098360655737705, 0.007513661202185792, 0.00546448087431694, 0.34153005464480873, 0.0034153005464480873, 0.0034153005464480873, 0.7923497267759563, 0.004098360655737705, 0.00546448087431694, 0.006147540983606557, 0.0047814207650273225, 0.00546448087431694, 0.00546448087431694, 0.00546448087431694, 0.006147540983606557, 0.00819672131147541, 0.010245901639344262, 0.9002732240437158, 0.9275956284153005, 0.869535519125683, 0.012978142076502733, 0.03483606557377049, 0.03756830601092896, 0.04644808743169399, 0.07103825136612021, 0.16598360655737704, 0.14959016393442623, 0.605191256830601, 0.7725409836065574, 0.930327868852459, 0.6734972677595629, 0.4248633879781421, 0.328551912568306, 0.30191256830601093, 0.28415300546448086, 0.2581967213114754, 0.17691256830601093, 0.76775956284153, 0.8770491803278688, 0.9467213114754098, 0.9337431693989071, 0.796448087431694, 0.6905737704918032, 0.18579234972677597, 0.15846994535519127, 0.769808743169399, 0.8244535519125683, 0.9405737704918032, 0.7807377049180327, 0.7329234972677595, 0.16120218579234974, 0.1646174863387978, 0.16666666666666666, 0.1680327868852459, 0.17281420765027322, 0.17827868852459017, 0.19808743169398907, 0.27595628415300544, 0.523224043715847], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Tmemb_14.gap.json b/pfam_gap_rates/Tmemb_14.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..72b9ae521b4931a76dc3a8a2a57e6a954a89dee8
--- /dev/null
+++ b/pfam_gap_rates/Tmemb_14.gap.json
@@ -0,0 +1 @@
+{"family": "Tmemb_14", "n_seqs": 527, "length": 110, "gap_rates": [0.6148007590132827, 0.2675521821631879, 0.1366223908918406, 0.10246679316888045, 0.07400379506641366, 0.06072106261859583, 0.05313092979127135, 0.051233396584440226, 0.04933586337760911, 0.04933586337760911, 0.04933586337760911, 0.04743833017077799, 0.04554079696394687, 0.04364326375711575, 0.04364326375711575, 0.03225806451612903, 0.03225806451612903, 0.030360531309297913, 0.03225806451612903, 0.026565464895635674, 0.024667931688804556, 0.020872865275142316, 0.018975332068311195, 0.018975332068311195, 0.017077798861480076, 0.017077798861480076, 0.018975332068311195, 0.017077798861480076, 0.030360531309297913, 0.018975332068311195, 0.017077798861480076, 0.018975332068311195, 0.018975332068311195, 0.018975332068311195, 0.018975332068311195, 0.018975332068311195, 0.018975332068311195, 0.018975332068311195, 0.017077798861480076, 0.024667931688804556, 0.018975332068311195, 0.020872865275142316, 0.018975332068311195, 0.8007590132827325, 0.8083491461100569, 0.9222011385199241, 0.9392789373814042, 0.8595825426944972, 0.8007590132827325, 0.7950664136622391, 0.024667931688804556, 0.1859582542694497, 0.174573055028463, 0.16129032258064516, 0.13282732447817835, 0.1252371916508539, 0.06072106261859583, 0.7191650853889943, 0.8197343453510436, 0.3036053130929791, 0.04174573055028463, 0.04933586337760911, 0.04743833017077799, 0.04743833017077799, 0.030360531309297913, 0.9108159392789373, 0.9108159392789373, 0.9297912713472486, 0.9411764705882353, 0.9297912713472486, 0.9108159392789373, 0.905123339658444, 0.036053130929791274, 0.03795066413662239, 0.03795066413662239, 0.03415559772296015, 0.03415559772296015, 0.03415559772296015, 0.03415559772296015, 0.036053130929791274, 0.03795066413662239, 0.036053130929791274, 0.036053130929791274, 0.04174573055028463, 0.06641366223908918, 0.04554079696394687, 0.056925996204933584, 0.06072106261859583, 0.07020872865275142, 0.10436432637571158, 0.9222011385199241, 0.11385199240986717, 0.0683111954459203, 0.0683111954459203, 0.06261859582542695, 0.06072106261859583, 0.06072106261859583, 0.06261859582542695, 0.06072106261859583, 0.29411764705882354, 0.07020872865275142, 0.07400379506641366, 0.09297912713472485, 0.1062618595825427, 0.11764705882352941, 0.14041745730550284, 0.1555977229601518, 0.22011385199240988, 0.44022770398481975, 0.5749525616698292], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Tmemb_40.gap.json b/pfam_gap_rates/Tmemb_40.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d13fcc23178e0b816a5bfa0ce936f0ee1d259685
--- /dev/null
+++ b/pfam_gap_rates/Tmemb_40.gap.json
@@ -0,0 +1 @@
+{"family": "Tmemb_40", "n_seqs": 120, "length": 295, "gap_rates": [0.44166666666666665, 0.36666666666666664, 0.3, 0.2833333333333333, 0.24166666666666667, 0.24166666666666667, 0.21666666666666667, 0.21666666666666667, 0.21666666666666667, 0.21666666666666667, 0.21666666666666667, 0.20833333333333334, 0.20833333333333334, 0.20833333333333334, 0.20833333333333334, 0.20833333333333334, 0.20833333333333334, 0.20833333333333334, 0.20833333333333334, 0.20833333333333334, 0.20833333333333334, 0.20833333333333334, 0.20833333333333334, 0.20833333333333334, 0.20833333333333334, 0.20833333333333334, 0.20833333333333334, 0.20833333333333334, 0.20833333333333334, 0.20833333333333334, 0.20833333333333334, 0.20833333333333334, 0.20833333333333334, 0.20833333333333334, 0.2, 0.2, 0.2, 0.2, 0.2, 0.95, 0.2, 0.18333333333333332, 0.18333333333333332, 0.175, 0.175, 0.175, 0.175, 0.175, 0.18333333333333332, 0.18333333333333332, 0.18333333333333332, 0.19166666666666668, 0.19166666666666668, 0.19166666666666668, 0.18333333333333332, 0.18333333333333332, 0.18333333333333332, 0.18333333333333332, 0.19166666666666668, 0.19166666666666668, 0.19166666666666668, 0.19166666666666668, 0.19166666666666668, 0.175, 0.16666666666666666, 0.19166666666666668, 0.7166666666666667, 0.5416666666666666, 0.19166666666666668, 0.19166666666666668, 0.16666666666666666, 0.16666666666666666, 0.15833333333333333, 0.15, 0.15, 0.14166666666666666, 0.15, 0.15, 0.14166666666666666, 0.13333333333333333, 0.13333333333333333, 0.13333333333333333, 0.13333333333333333, 0.13333333333333333, 0.13333333333333333, 0.13333333333333333, 0.13333333333333333, 0.13333333333333333, 0.13333333333333333, 0.13333333333333333, 0.13333333333333333, 0.13333333333333333, 0.13333333333333333, 0.13333333333333333, 0.13333333333333333, 0.13333333333333333, 0.13333333333333333, 0.13333333333333333, 0.125, 0.125, 0.5083333333333333, 0.5083333333333333, 0.5166666666666667, 0.5083333333333333, 0.13333333333333333, 0.13333333333333333, 0.13333333333333333, 0.13333333333333333, 0.13333333333333333, 0.13333333333333333, 0.13333333333333333, 0.13333333333333333, 0.13333333333333333, 0.13333333333333333, 0.13333333333333333, 0.13333333333333333, 0.13333333333333333, 0.13333333333333333, 0.13333333333333333, 0.13333333333333333, 0.13333333333333333, 0.13333333333333333, 0.13333333333333333, 0.13333333333333333, 0.13333333333333333, 0.13333333333333333, 0.13333333333333333, 0.13333333333333333, 0.13333333333333333, 0.13333333333333333, 0.13333333333333333, 0.13333333333333333, 0.125, 0.13333333333333333, 0.13333333333333333, 0.125, 0.5666666666666667, 0.5666666666666667, 0.575, 0.5833333333333334, 0.5833333333333334, 0.7416666666666667, 0.9416666666666667, 0.775, 0.5916666666666667, 0.5833333333333334, 0.5833333333333334, 0.575, 0.5666666666666667, 0.5666666666666667, 0.13333333333333333, 0.14166666666666666, 0.14166666666666666, 0.13333333333333333, 0.13333333333333333, 0.13333333333333333, 0.15, 0.15, 0.15, 0.5833333333333334, 0.575, 0.575, 0.6, 0.6, 0.575, 0.5833333333333334, 0.7333333333333333, 0.5583333333333333, 0.5583333333333333, 0.5583333333333333, 0.55, 0.55, 0.55, 0.13333333333333333, 0.13333333333333333, 0.13333333333333333, 0.13333333333333333, 0.13333333333333333, 0.13333333333333333, 0.13333333333333333, 0.13333333333333333, 0.13333333333333333, 0.13333333333333333, 0.14166666666666666, 0.14166666666666666, 0.15, 0.15, 0.15, 0.15, 0.15, 0.15, 0.15, 0.15, 0.15, 0.15, 0.15833333333333333, 0.15833333333333333, 0.15833333333333333, 0.175, 0.5583333333333333, 0.5583333333333333, 0.175, 0.175, 0.16666666666666666, 0.15, 0.15, 0.15, 0.15, 0.15, 0.15, 0.15, 0.15, 0.14166666666666666, 0.14166666666666666, 0.15, 0.15, 0.15, 0.15, 0.15, 0.15, 0.15, 0.15, 0.15, 0.15, 0.15, 0.15, 0.15833333333333333, 0.15, 0.15, 0.15, 0.14166666666666666, 0.14166666666666666, 0.14166666666666666, 0.13333333333333333, 0.9333333333333333, 0.14166666666666666, 0.13333333333333333, 0.13333333333333333, 0.13333333333333333, 0.125, 0.13333333333333333, 0.14166666666666666, 0.14166666666666666, 0.15, 0.15, 0.15, 0.15, 0.15, 0.15, 0.15, 0.15, 0.15833333333333333, 0.15833333333333333, 0.15833333333333333, 0.15833333333333333, 0.15833333333333333, 0.15833333333333333, 0.15833333333333333, 0.16666666666666666, 0.16666666666666666, 0.16666666666666666, 0.16666666666666666, 0.16666666666666666, 0.16666666666666666, 0.16666666666666666, 0.175, 0.18333333333333332, 0.19166666666666668, 0.825, 0.8333333333333334, 0.8333333333333334, 0.8333333333333334, 0.8333333333333334, 0.8333333333333334, 0.8333333333333334, 0.8333333333333334, 0.8416666666666667, 0.8333333333333334, 0.8333333333333334, 0.8333333333333334, 0.8333333333333334, 0.8333333333333334, 0.8333333333333334, 0.825, 0.825, 0.39166666666666666, 0.4083333333333333, 0.4083333333333333, 0.4083333333333333, 0.45, 0.45, 0.45, 0.45, 0.5583333333333333, 0.6166666666666667], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Tn7_Tnp_TnsA_N.gap.json b/pfam_gap_rates/Tn7_Tnp_TnsA_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d73c1dcd61a991de0fa67f623e1f356606f695a7
--- /dev/null
+++ b/pfam_gap_rates/Tn7_Tnp_TnsA_N.gap.json
@@ -0,0 +1 @@
+{"family": "Tn7_Tnp_TnsA_N", "n_seqs": 174, "length": 111, "gap_rates": [0.5632183908045977, 0.23563218390804597, 0.11494252873563218, 0.09770114942528736, 0.09770114942528736, 0.08045977011494253, 0.08045977011494253, 0.06896551724137931, 0.05172413793103448, 0.5287356321839081, 0.04597701149425287, 0.04597701149425287, 0.5114942528735632, 0.5229885057471264, 0.7471264367816092, 0.5229885057471264, 0.5114942528735632, 0.04597701149425287, 0.040229885057471264, 0.034482758620689655, 0.028735632183908046, 0.028735632183908046, 0.04597701149425287, 0.05172413793103448, 0.22413793103448276, 0.034482758620689655, 0.028735632183908046, 0.022988505747126436, 0.028735632183908046, 0.034482758620689655, 0.5459770114942529, 0.5344827586206896, 0.6839080459770115, 0.6609195402298851, 0.5057471264367817, 0.4942528735632184, 0.40804597701149425, 0.3735632183908046, 0.3563218390804598, 0.3505747126436782, 0.017241379310344827, 0.005747126436781609, 0.005747126436781609, 0.005747126436781609, 0.005747126436781609, 0.005747126436781609, 0.005747126436781609, 0.005747126436781609, 0.005747126436781609, 0.028735632183908046, 0.005747126436781609, 0.27586206896551724, 0.5919540229885057, 0.5287356321839081, 0.5, 0.9310344827586207, 0.9482758620689655, 0.7241379310344828, 0.017241379310344827, 0.011494252873563218, 0.011494252873563218, 0.011494252873563218, 0.011494252873563218, 0.011494252873563218, 0.011494252873563218, 0.011494252873563218, 0.011494252873563218, 0.011494252873563218, 0.011494252873563218, 0.011494252873563218, 0.011494252873563218, 0.011494252873563218, 0.011494252873563218, 0.7183908045977011, 0.6551724137931034, 0.040229885057471264, 0.017241379310344827, 0.017241379310344827, 0.017241379310344827, 0.017241379310344827, 0.017241379310344827, 0.022988505747126436, 0.022988505747126436, 0.022988505747126436, 0.867816091954023, 0.867816091954023, 0.8735632183908046, 0.8793103448275862, 0.896551724137931, 0.8793103448275862, 0.8793103448275862, 0.8735632183908046, 0.867816091954023, 0.867816091954023, 0.034482758620689655, 0.05172413793103448, 0.05747126436781609, 0.05747126436781609, 0.06896551724137931, 0.06321839080459771, 0.06896551724137931, 0.08045977011494253, 0.08045977011494253, 0.08045977011494253, 0.08620689655172414, 0.09770114942528736, 0.10344827586206896, 0.10919540229885058, 0.11494252873563218, 0.21264367816091953, 0.3793103448275862], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Tom37.gap.json b/pfam_gap_rates/Tom37.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..187b57904167a7ec19e85edc4209425201c6aea6
--- /dev/null
+++ b/pfam_gap_rates/Tom37.gap.json
@@ -0,0 +1 @@
+{"family": "Tom37", "n_seqs": 316, "length": 155, "gap_rates": [0.40189873417721517, 0.370253164556962, 0.36075949367088606, 0.36075949367088606, 0.35443037974683544, 0.3449367088607595, 0.3829113924050633, 0.3322784810126582, 0.310126582278481, 0.2911392405063291, 0.2879746835443038, 0.2879746835443038, 0.28164556962025317, 0.2721518987341772, 0.16455696202531644, 0.15822784810126583, 0.15822784810126583, 0.14556962025316456, 0.13924050632911392, 0.12025316455696203, 0.11392405063291139, 0.0981012658227848, 0.0981012658227848, 0.0981012658227848, 0.0981012658227848, 0.22468354430379747, 0.0981012658227848, 0.0949367088607595, 0.08860759493670886, 0.7151898734177216, 0.8544303797468354, 0.6550632911392406, 0.08860759493670886, 0.08544303797468354, 0.08227848101265822, 0.08227848101265822, 0.08227848101265822, 0.08227848101265822, 0.08544303797468354, 0.09177215189873418, 0.1518987341772152, 0.0981012658227848, 0.0949367088607595, 0.0981012658227848, 0.8069620253164557, 0.09177215189873418, 0.0759493670886076, 0.0759493670886076, 0.06329113924050633, 0.056962025316455694, 0.05379746835443038, 0.05063291139240506, 0.05063291139240506, 0.05063291139240506, 0.05379746835443038, 0.05063291139240506, 0.0759493670886076, 0.056962025316455694, 0.8607594936708861, 0.9177215189873418, 0.7784810126582279, 0.06329113924050633, 0.05379746835443038, 0.04746835443037975, 0.9240506329113924, 0.04746835443037975, 0.04430379746835443, 0.04746835443037975, 0.04430379746835443, 0.04113924050632911, 0.04113924050632911, 0.0379746835443038, 0.03481012658227848, 0.03481012658227848, 0.03481012658227848, 0.03481012658227848, 0.07911392405063292, 0.1360759493670886, 0.6518987341772152, 0.8639240506329114, 0.8924050632911392, 0.9208860759493671, 0.9493670886075949, 0.9335443037974683, 0.9113924050632911, 0.8860759493670886, 0.7753164556962026, 0.6012658227848101, 0.0949367088607595, 0.06962025316455696, 0.05063291139240506, 0.10443037974683544, 0.0759493670886076, 0.06329113924050633, 0.04113924050632911, 0.03481012658227848, 0.028481012658227847, 0.028481012658227847, 0.028481012658227847, 0.0379746835443038, 0.022151898734177215, 0.022151898734177215, 0.022151898734177215, 0.022151898734177215, 0.022151898734177215, 0.022151898734177215, 0.022151898734177215, 0.02531645569620253, 0.02531645569620253, 0.02531645569620253, 0.02531645569620253, 0.03164556962025317, 0.02531645569620253, 0.03164556962025317, 0.03164556962025317, 0.028481012658227847, 0.03164556962025317, 0.028481012658227847, 0.028481012658227847, 0.04113924050632911, 0.04113924050632911, 0.04113924050632911, 0.04430379746835443, 0.04430379746835443, 0.05063291139240506, 0.05379746835443038, 0.05063291139240506, 0.04430379746835443, 0.04746835443037975, 0.05063291139240506, 0.04746835443037975, 0.0949367088607595, 0.04113924050632911, 0.04113924050632911, 0.04113924050632911, 0.04113924050632911, 0.04430379746835443, 0.04430379746835443, 0.04430379746835443, 0.05379746835443038, 0.05379746835443038, 0.05063291139240506, 0.056962025316455694, 0.056962025316455694, 0.056962025316455694, 0.056962025316455694, 0.056962025316455694, 0.060126582278481014, 0.06329113924050633, 0.06962025316455696, 0.0759493670886076, 0.0759493670886076, 0.10759493670886076, 0.17088607594936708, 0.45569620253164556], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Topo-VIb_trans.gap.json b/pfam_gap_rates/Topo-VIb_trans.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..69d2051a07d7c7fc98977dba93ac870e077eef58
--- /dev/null
+++ b/pfam_gap_rates/Topo-VIb_trans.gap.json
@@ -0,0 +1 @@
+{"family": "Topo-VIb_trans", "n_seqs": 135, "length": 176, "gap_rates": [0.1037037037037037, 0.1037037037037037, 0.08148148148148149, 0.08148148148148149, 0.08148148148148149, 0.08148148148148149, 0.08148148148148149, 0.08148148148148149, 0.08148148148148149, 0.08148148148148149, 0.08148148148148149, 0.08148148148148149, 0.08148148148148149, 0.08148148148148149, 0.07407407407407407, 0.06666666666666667, 0.06666666666666667, 0.06666666666666667, 0.06666666666666667, 0.06666666666666667, 0.9333333333333333, 0.9333333333333333, 0.9259259259259259, 0.07407407407407407, 0.06666666666666667, 0.05925925925925926, 0.05925925925925926, 0.05925925925925926, 0.05925925925925926, 0.05925925925925926, 0.05925925925925926, 0.05925925925925926, 0.9407407407407408, 0.05925925925925926, 0.05925925925925926, 0.05925925925925926, 0.05925925925925926, 0.05925925925925926, 0.05925925925925926, 0.05925925925925926, 0.05925925925925926, 0.05925925925925926, 0.05185185185185185, 0.05185185185185185, 0.9407407407407408, 0.05185185185185185, 0.05185185185185185, 0.05185185185185185, 0.05185185185185185, 0.05185185185185185, 0.05185185185185185, 0.05185185185185185, 0.05185185185185185, 0.05185185185185185, 0.05185185185185185, 0.05185185185185185, 0.05925925925925926, 0.1037037037037037, 0.16296296296296298, 0.3111111111111111, 0.8888888888888888, 0.9407407407407408, 0.8888888888888888, 0.07407407407407407, 0.05925925925925926, 0.05185185185185185, 0.05185185185185185, 0.044444444444444446, 0.02962962962962963, 0.02962962962962963, 0.02962962962962963, 0.02962962962962963, 0.02962962962962963, 0.02962962962962963, 0.02962962962962963, 0.037037037037037035, 0.037037037037037035, 0.037037037037037035, 0.037037037037037035, 0.037037037037037035, 0.044444444444444446, 0.044444444444444446, 0.037037037037037035, 0.037037037037037035, 0.037037037037037035, 0.037037037037037035, 0.037037037037037035, 0.037037037037037035, 0.02962962962962963, 0.02962962962962963, 0.02962962962962963, 0.02962962962962963, 0.7333333333333333, 0.037037037037037035, 0.9111111111111111, 0.037037037037037035, 0.037037037037037035, 0.037037037037037035, 0.037037037037037035, 0.037037037037037035, 0.037037037037037035, 0.037037037037037035, 0.037037037037037035, 0.037037037037037035, 0.037037037037037035, 0.08888888888888889, 0.6074074074074074, 0.674074074074074, 0.8296296296296296, 0.674074074074074, 0.6074074074074074, 0.5777777777777777, 0.05185185185185185, 0.02962962962962963, 0.14814814814814814, 0.02962962962962963, 0.02962962962962963, 0.02962962962962963, 0.02962962962962963, 0.02962962962962963, 0.037037037037037035, 0.037037037037037035, 0.037037037037037035, 0.037037037037037035, 0.037037037037037035, 0.037037037037037035, 0.037037037037037035, 0.037037037037037035, 0.037037037037037035, 0.037037037037037035, 0.037037037037037035, 0.037037037037037035, 0.044444444444444446, 0.044444444444444446, 0.044444444444444446, 0.044444444444444446, 0.044444444444444446, 0.044444444444444446, 0.044444444444444446, 0.6814814814814815, 0.05185185185185185, 0.044444444444444446, 0.044444444444444446, 0.044444444444444446, 0.044444444444444446, 0.044444444444444446, 0.044444444444444446, 0.044444444444444446, 0.044444444444444446, 0.044444444444444446, 0.044444444444444446, 0.05185185185185185, 0.05185185185185185, 0.05185185185185185, 0.05185185185185185, 0.05185185185185185, 0.044444444444444446, 0.044444444444444446, 0.044444444444444446, 0.044444444444444446, 0.044444444444444446, 0.05185185185185185, 0.05185185185185185, 0.05185185185185185, 0.05185185185185185, 0.05185185185185185, 0.05185185185185185, 0.05185185185185185, 0.05185185185185185, 0.05925925925925926, 0.05925925925925926, 0.06666666666666667, 0.07407407407407407, 0.1111111111111111, 0.17037037037037037, 0.5481481481481482], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Torsin.gap.json b/pfam_gap_rates/Torsin.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..bad0b4d810a70c1518b0f1876bc2b2d6309e08ba
--- /dev/null
+++ b/pfam_gap_rates/Torsin.gap.json
@@ -0,0 +1 @@
+{"family": "Torsin", "n_seqs": 194, "length": 130, "gap_rates": [0.4948453608247423, 0.4793814432989691, 0.4690721649484536, 0.4536082474226804, 0.4381443298969072, 0.42783505154639173, 0.422680412371134, 0.41237113402061853, 0.8969072164948454, 0.8917525773195877, 0.3917525773195876, 0.38144329896907214, 0.36597938144329895, 0.5257731958762887, 0.29381443298969073, 0.24742268041237114, 0.2268041237113402, 0.19072164948453607, 0.11855670103092783, 0.09278350515463918, 0.08247422680412371, 0.07731958762886598, 0.07731958762886598, 0.06701030927835051, 0.061855670103092786, 0.05670103092783505, 0.05154639175257732, 0.05154639175257732, 0.05154639175257732, 0.05154639175257732, 0.05154639175257732, 0.05154639175257732, 0.05154639175257732, 0.05154639175257732, 0.05154639175257732, 0.05154639175257732, 0.05154639175257732, 0.04639175257731959, 0.05154639175257732, 0.041237113402061855, 0.041237113402061855, 0.041237113402061855, 0.03608247422680412, 0.03608247422680412, 0.03608247422680412, 0.03608247422680412, 0.03608247422680412, 0.041237113402061855, 0.04639175257731959, 0.06701030927835051, 0.9175257731958762, 0.03608247422680412, 0.015463917525773196, 0.015463917525773196, 0.020618556701030927, 0.015463917525773196, 0.015463917525773196, 0.010309278350515464, 0.005154639175257732, 0.005154639175257732, 0.005154639175257732, 0.005154639175257732, 0.005154639175257732, 0.005154639175257732, 0.005154639175257732, 0.005154639175257732, 0.0, 0.0, 0.0, 0.0, 0.0, 0.005154639175257732, 0.010309278350515464, 0.010309278350515464, 0.010309278350515464, 0.010309278350515464, 0.010309278350515464, 0.02577319587628866, 0.041237113402061855, 0.12886597938144329, 0.05670103092783505, 0.05670103092783505, 0.061855670103092786, 0.08762886597938144, 0.0979381443298969, 0.09278350515463918, 0.09278350515463918, 0.09278350515463918, 0.09278350515463918, 0.0979381443298969, 0.0979381443298969, 0.10309278350515463, 0.10309278350515463, 0.0979381443298969, 0.0979381443298969, 0.0979381443298969, 0.10309278350515463, 0.10309278350515463, 0.10309278350515463, 0.10824742268041238, 0.10824742268041238, 0.10824742268041238, 0.10824742268041238, 0.10824742268041238, 0.10824742268041238, 0.10824742268041238, 0.0979381443298969, 0.0979381443298969, 0.0979381443298969, 0.0979381443298969, 0.1134020618556701, 0.12371134020618557, 0.12371134020618557, 0.12371134020618557, 0.12371134020618557, 0.12371134020618557, 0.12886597938144329, 0.12886597938144329, 0.13402061855670103, 0.13402061855670103, 0.13402061855670103, 0.15979381443298968, 0.211340206185567, 0.22164948453608246, 0.23711340206185566, 0.23711340206185566, 0.23711340206185566, 0.23711340206185566, 0.24742268041237114, 0.24742268041237114], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Tox-GHH.gap.json b/pfam_gap_rates/Tox-GHH.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c6947ada391b790efb927bf28fd94e51f2035453
--- /dev/null
+++ b/pfam_gap_rates/Tox-GHH.gap.json
@@ -0,0 +1 @@
+{"family": "Tox-GHH", "n_seqs": 155, "length": 78, "gap_rates": [0.22580645161290322, 0.14838709677419354, 0.11612903225806452, 0.0967741935483871, 0.08387096774193549, 0.07741935483870968, 0.05161290322580645, 0.05161290322580645, 0.05161290322580645, 0.03225806451612903, 0.01935483870967742, 0.012903225806451613, 0.0064516129032258064, 0.0064516129032258064, 0.0064516129032258064, 0.0064516129032258064, 0.0064516129032258064, 0.0064516129032258064, 0.0064516129032258064, 0.0064516129032258064, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.03870967741935484, 0.0, 0.04516129032258064, 0.04516129032258064, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.012903225806451613, 0.0, 0.0064516129032258064, 0.0064516129032258064, 0.0064516129032258064, 0.0064516129032258064, 0.0064516129032258064, 0.0064516129032258064, 0.0064516129032258064, 0.0064516129032258064, 0.012903225806451613, 0.01935483870967742, 0.06451612903225806, 0.025806451612903226, 0.025806451612903226, 0.03225806451612903, 0.03225806451612903, 0.03870967741935484, 0.03225806451612903, 0.03870967741935484, 0.03870967741935484, 0.03870967741935484, 0.04516129032258064, 0.04516129032258064, 0.07096774193548387, 0.04516129032258064, 0.04516129032258064, 0.04516129032258064, 0.04516129032258064, 0.05161290322580645, 0.1032258064516129, 0.16774193548387098], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Transcrip_reg.gap.json b/pfam_gap_rates/Transcrip_reg.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..39ab3f520f0b41bf16230e901963789ce4c27f91
--- /dev/null
+++ b/pfam_gap_rates/Transcrip_reg.gap.json
@@ -0,0 +1 @@
+{"family": "Transcrip_reg", "n_seqs": 2619, "length": 250, "gap_rates": [0.27491408934707906, 0.19511263841160748, 0.11034746086292478, 0.10423825887743414, 0.08323787705231005, 0.07254677357770141, 0.0683466972126766, 0.06452844597174494, 0.05574646811760214, 0.05154639175257732, 0.047728140511645666, 0.045819014891179836, 0.045819014891179836, 0.044673539518900345, 0.045055364642993506, 0.044291714394807176, 0.044291714394807176, 0.042000763650248185, 0.041618938526155023, 0.041237113402061855, 0.040473463153875525, 0.040473463153875525, 0.040473463153875525, 0.038946162657502864, 0.037800687285223365, 0.037800687285223365, 0.037418862161130204, 0.037418862161130204, 0.037037037037037035, 0.03512791141657121, 0.033982436044291714, 0.033982436044291714, 0.033218785796105384, 0.052691867124856816, 0.8888888888888888, 0.05803741886216113, 0.043146239022527684, 0.06872852233676977, 0.042764413898434515, 0.04009163802978236, 0.033982436044291714, 0.048491790759831996, 0.030927835051546393, 0.030927835051546393, 0.030164184803360063, 0.030164184803360063, 0.029782359679266894, 0.029782359679266894, 0.02940053455517373, 0.028255059182894234, 0.028255059182894234, 0.0286368843069874, 0.0286368843069874, 0.028255059182894234, 0.02787323405880107, 0.02787323405880107, 0.028255059182894234, 0.026345933562428408, 0.025964108438335243, 0.025582283314242078, 0.025582283314242078, 0.025200458190148912, 0.024818633066055747, 0.024818633066055747, 0.024818633066055747, 0.025200458190148912, 0.025582283314242078, 0.025200458190148912, 0.025200458190148912, 0.025582283314242078, 0.026345933562428408, 0.02940053455517373, 0.051928216876670485, 0.5593738067964872, 0.6300114547537228, 0.07101947308132875, 0.05078274150439099, 0.047728140511645666, 0.040473463153875525, 0.03169148529973272, 0.02787323405880107, 0.026727758686521573, 0.026727758686521573, 0.026727758686521573, 0.026345933562428408, 0.026345933562428408, 0.025964108438335243, 0.026345933562428408, 0.026727758686521573, 0.029018709431080564, 0.026727758686521573, 0.026727758686521573, 0.026727758686521573, 0.025964108438335243, 0.025582283314242078, 0.024818633066055747, 0.024818633066055747, 0.024436807941962582, 0.024054982817869417, 0.024054982817869417, 0.024054982817869417, 0.023673157693776252, 0.024054982817869417, 0.024054982817869417, 0.024054982817869417, 0.024054982817869417, 0.024054982817869417, 0.024436807941962582, 0.024818633066055747, 0.024818633066055747, 0.024818633066055747, 0.024818633066055747, 0.025200458190148912, 0.025200458190148912, 0.024818633066055747, 0.024818633066055747, 0.025200458190148912, 0.038564337533409696, 0.039327987781596026, 0.025964108438335243, 0.026727758686521573, 0.026345933562428408, 0.08285605192821688, 0.08323787705231005, 0.08056510118365788, 0.030546009927453228, 0.0286368843069874, 0.02787323405880107, 0.02787323405880107, 0.02787323405880107, 0.026345933562428408, 0.0286368843069874, 0.02940053455517373, 0.033982436044291714, 0.048491790759831996, 0.056891943489881636, 0.06529209621993128, 0.0649102710958381, 0.06567392134402443, 0.0660557464681176, 0.4413898434516991, 0.07254677357770141, 0.21611302023673157, 0.614356624665903, 0.9350897289041619, 0.921344024436808, 0.6529209621993127, 0.12523864070255822, 0.07140129820542192, 0.06567392134402443, 0.06529209621993128, 0.06529209621993128, 0.06529209621993128, 0.06529209621993128, 0.06529209621993128, 0.0649102710958381, 0.06529209621993128, 0.0649102710958381, 0.0649102710958381, 0.06414662084765177, 0.06414662084765177, 0.06414662084765177, 0.9499809087437954, 0.0649102710958381, 0.07445589919816724, 0.0649102710958381, 0.0649102710958381, 0.0649102710958381, 0.0660557464681176, 0.7976326842306224, 0.9282168766704849, 0.9125620465826652, 0.7101947308132875, 0.15693012600229095, 0.1145475372279496, 0.06796487208858343, 0.9396716303932798, 0.9377625047728141, 0.0683466972126766, 0.06681939671630394, 0.06681939671630394, 0.0660557464681176, 0.06643757159221077, 0.06758304696449026, 0.06758304696449026, 0.06758304696449026, 0.0672012218403971, 0.0672012218403971, 0.0672012218403971, 0.0672012218403971, 0.0672012218403971, 0.06681939671630394, 0.06643757159221077, 0.06643757159221077, 0.06643757159221077, 0.06643757159221077, 0.06643757159221077, 0.0672012218403971, 0.06796487208858343, 0.9442535318823979, 0.49866361206567394, 0.2852233676975945, 0.17487590683466972, 0.12752959144711723, 0.07140129820542192, 0.06949217258495609, 0.0683466972126766, 0.06872852233676977, 0.0672012218403971, 0.06567392134402443, 0.06452844597174494, 0.06452844597174494, 0.06452844597174494, 0.06452844597174494, 0.06452844597174494, 0.0649102710958381, 0.06414662084765177, 0.06452844597174494, 0.06452844597174494, 0.0649102710958381, 0.8594883543337152, 0.0672012218403971, 0.8831615120274914, 0.06681939671630394, 0.06529209621993128, 0.0649102710958381, 0.0649102710958381, 0.0649102710958381, 0.06567392134402443, 0.06567392134402443, 0.06567392134402443, 0.06567392134402443, 0.06567392134402443, 0.0660557464681176, 0.0660557464681176, 0.0660557464681176, 0.0660557464681176, 0.0672012218403971, 0.06796487208858343, 0.0683466972126766, 0.06872852233676977, 0.06872852233676977, 0.06872852233676977, 0.06911034746086292, 0.06949217258495609, 0.06987399770904926, 0.07025582283314243, 0.07941962581137839, 0.1156930126002291, 0.2688048873615884], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Transglut_core2.gap.json b/pfam_gap_rates/Transglut_core2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..abd72cb40d014a45e11c79286b0dd61f54dbfa27
--- /dev/null
+++ b/pfam_gap_rates/Transglut_core2.gap.json
@@ -0,0 +1 @@
+{"family": "Transglut_core2", "n_seqs": 560, "length": 218, "gap_rates": [0.6446428571428572, 0.39285714285714285, 0.275, 0.20535714285714285, 0.1767857142857143, 0.1625, 0.15892857142857142, 0.15714285714285714, 0.15178571428571427, 0.15, 0.14821428571428572, 0.14821428571428572, 0.1392857142857143, 0.1375, 0.1357142857142857, 0.1357142857142857, 0.8589285714285714, 0.9125, 0.85, 0.1375, 0.15357142857142858, 0.15, 0.12678571428571428, 0.8196428571428571, 0.8589285714285714, 0.8678571428571429, 0.8732142857142857, 0.8839285714285714, 0.8964285714285715, 0.9125, 0.9196428571428571, 0.9339285714285714, 0.9410714285714286, 0.9357142857142857, 0.9196428571428571, 0.9142857142857143, 0.9, 0.8910714285714286, 0.8803571428571428, 0.8696428571428572, 0.8678571428571429, 0.8482142857142857, 0.8107142857142857, 0.16071428571428573, 0.12321428571428572, 0.11607142857142858, 0.10535714285714286, 0.0875, 0.9392857142857143, 0.9482142857142857, 0.9267857142857143, 0.1125, 0.11428571428571428, 0.10892857142857143, 0.06964285714285715, 0.06428571428571428, 0.06428571428571428, 0.06607142857142857, 0.06607142857142857, 0.08035714285714286, 0.10357142857142858, 0.08571428571428572, 0.060714285714285714, 0.05178571428571429, 0.039285714285714285, 0.0375, 0.0375, 0.0375, 0.03571428571428571, 0.03571428571428571, 0.10357142857142858, 0.9232142857142858, 0.8625, 0.04642857142857143, 0.03214285714285714, 0.03571428571428571, 0.030357142857142857, 0.026785714285714284, 0.023214285714285715, 0.023214285714285715, 0.023214285714285715, 0.02142857142857143, 0.02142857142857143, 0.019642857142857142, 0.014285714285714285, 0.014285714285714285, 0.017857142857142856, 0.017857142857142856, 0.017857142857142856, 0.014285714285714285, 0.014285714285714285, 0.9214285714285714, 0.9071428571428571, 0.01607142857142857, 0.01607142857142857, 0.01607142857142857, 0.01607142857142857, 0.01607142857142857, 0.01607142857142857, 0.01607142857142857, 0.01607142857142857, 0.01607142857142857, 0.01607142857142857, 0.0125, 0.0125, 0.0125, 0.014285714285714285, 0.01607142857142857, 0.017857142857142856, 0.019642857142857142, 0.03571428571428571, 0.039285714285714285, 0.044642857142857144, 0.044642857142857144, 0.05178571428571429, 0.05178571428571429, 0.05, 0.06428571428571428, 0.06785714285714285, 0.075, 0.075, 0.07857142857142857, 0.07857142857142857, 0.08214285714285714, 0.08214285714285714, 0.08214285714285714, 0.09107142857142857, 0.08392857142857142, 0.7857142857142857, 0.8321428571428572, 0.8732142857142857, 0.8928571428571429, 0.9035714285714286, 0.925, 0.9428571428571428, 0.9357142857142857, 0.9196428571428571, 0.9, 0.8857142857142857, 0.8482142857142857, 0.8053571428571429, 0.7696428571428572, 0.5571428571428572, 0.2357142857142857, 0.23214285714285715, 0.22142857142857142, 0.21428571428571427, 0.11071428571428571, 0.7857142857142857, 0.8178571428571428, 0.8571428571428571, 0.9196428571428571, 0.9392857142857143, 0.9482142857142857, 0.9321428571428572, 0.8803571428571428, 0.8410714285714286, 0.8035714285714286, 0.7607142857142857, 0.10892857142857143, 0.1125, 0.1125, 0.11428571428571428, 0.11428571428571428, 0.11607142857142858, 0.11607142857142858, 0.35714285714285715, 0.125, 0.12678571428571428, 0.1357142857142857, 0.14821428571428572, 0.15178571428571427, 0.15357142857142858, 0.16607142857142856, 0.17142857142857143, 0.175, 0.1767857142857143, 0.18214285714285713, 0.18214285714285713, 0.18571428571428572, 0.19642857142857142, 0.19642857142857142, 0.21428571428571427, 0.2517857142857143, 0.2839285714285714, 0.2910714285714286, 0.9142857142857143, 0.95, 0.9303571428571429, 0.8910714285714286, 0.5696428571428571, 0.4928571428571429, 0.41964285714285715, 0.2571428571428571, 0.25357142857142856, 0.2517857142857143, 0.23035714285714284, 0.9160714285714285, 0.9357142857142857, 0.9375, 0.9178571428571428, 0.9071428571428571, 0.2375, 0.23214285714285715, 0.23214285714285715, 0.23214285714285715, 0.23392857142857143, 0.23392857142857143, 0.23392857142857143, 0.2357142857142857, 0.2392857142857143, 0.24107142857142858, 0.24821428571428572, 0.2571428571428571, 0.2714285714285714, 0.3, 0.35714285714285715, 0.7339285714285714], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Transglycosylas.gap.json b/pfam_gap_rates/Transglycosylas.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..282501f753cc52b6bdeb7018b2264fdb1199a618
--- /dev/null
+++ b/pfam_gap_rates/Transglycosylas.gap.json
@@ -0,0 +1 @@
+{"family": "Transglycosylas", "n_seqs": 458, "length": 78, "gap_rates": [0.9366812227074236, 0.517467248908297, 0.39082969432314413, 0.22707423580786026, 0.0851528384279476, 0.043668122270742356, 0.03056768558951965, 0.028384279475982533, 0.021834061135371178, 0.019650655021834062, 0.017467248908296942, 0.008733624454148471, 0.006550218340611353, 0.004366812227074236, 0.008733624454148471, 0.008733624454148471, 0.006550218340611353, 0.006550218340611353, 0.004366812227074236, 0.006550218340611353, 0.004366812227074236, 0.004366812227074236, 0.002183406113537118, 0.002183406113537118, 0.004366812227074236, 0.008733624454148471, 0.002183406113537118, 0.002183406113537118, 0.002183406113537118, 0.002183406113537118, 0.002183406113537118, 0.9432314410480349, 0.002183406113537118, 0.002183406113537118, 0.004366812227074236, 0.004366812227074236, 0.006550218340611353, 0.008733624454148471, 0.008733624454148471, 0.008733624454148471, 0.010917030567685589, 0.013100436681222707, 0.017467248908296942, 0.034934497816593885, 0.03275109170305677, 0.03056768558951965, 0.3406113537117904, 0.3471615720524017, 0.3406113537117904, 0.026200873362445413, 0.010917030567685589, 0.008733624454148471, 0.008733624454148471, 0.008733624454148471, 0.008733624454148471, 0.008733624454148471, 0.008733624454148471, 0.008733624454148471, 0.008733624454148471, 0.008733624454148471, 0.008733624454148471, 0.008733624454148471, 0.008733624454148471, 0.008733624454148471, 0.010917030567685589, 0.008733624454148471, 0.008733624454148471, 0.008733624454148471, 0.010917030567685589, 0.013100436681222707, 0.017467248908296942, 0.017467248908296942, 0.017467248908296942, 0.026200873362445413, 0.026200873362445413, 0.028384279475982533, 0.06768558951965066, 0.11572052401746726], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Transposase_mut.gap.json b/pfam_gap_rates/Transposase_mut.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..2790a23bf5b033e054c93a384f0094f4f9d16173
--- /dev/null
+++ b/pfam_gap_rates/Transposase_mut.gap.json
@@ -0,0 +1 @@
+{"family": "Transposase_mut", "n_seqs": 2435, "length": 378, "gap_rates": [0.9404517453798767, 0.9338809034907598, 0.895687885010267, 0.8685831622176592, 0.839835728952772, 0.8069815195071869, 0.7700205338809035, 0.7482546201232033, 0.7281314168377824, 0.708829568788501, 0.6772073921971252, 0.6743326488706366, 0.6501026694045174, 0.5864476386036961, 0.5609856262833676, 0.535523613963039, 0.5203285420944559, 0.5104722792607803, 0.5092402464065708, 0.4878850102669405, 0.4829568788501027, 0.4731006160164271, 0.4698151950718686, 0.4673511293634497, 0.46570841889117043, 0.4562628336755647, 0.4542094455852156, 0.45092402464065706, 0.4439425051334702, 0.4381930184804928, 0.437782340862423, 0.43655030800821354, 0.4320328542094456, 0.42792607802874744, 0.4275154004106776, 0.42669404517453796, 0.4262833675564682, 0.4246406570841889, 0.4238193018480493, 0.4238193018480493, 0.4234086242299795, 0.4242299794661191, 0.4238193018480493, 0.42546201232032854, 0.42792607802874744, 0.4357289527720739, 0.44106776180698154, 0.44229979466119096, 0.44353182751540043, 0.4480492813141684, 0.437782340862423, 0.43860369609856265, 0.4369609856262834, 0.437782340862423, 0.7671457905544148, 0.4344969199178645, 0.41806981519507186, 0.41232032854209444, 0.4106776180698152, 0.41190965092402465, 0.41314168377823407, 0.41314168377823407, 0.4135523613963039, 0.4135523613963039, 0.4135523613963039, 0.4164271047227926, 0.41765913757700207, 0.4160164271047228, 0.41560574948665296, 0.4135523613963039, 0.4127310061601643, 0.41437371663244355, 0.41190965092402465, 0.4102669404517454, 0.40492813141683776, 0.40492813141683776, 0.4041067761806982, 0.4041067761806982, 0.406570841889117, 0.4082135523613963, 0.4090349075975359, 0.4086242299794661, 0.41190965092402465, 0.4114989733059548, 0.4106776180698152, 0.4135523613963039, 0.4151950718685832, 0.4160164271047228, 0.41560574948665296, 0.41560574948665296, 0.41683778234086244, 0.4172484599589322, 0.4209445585215606, 0.42176591375770023, 0.4234086242299795, 0.42546201232032854, 0.42546201232032854, 0.42669404517453796, 0.4271047227926078, 0.4275154004106776, 0.42546201232032854, 0.4246406570841889, 0.4213552361396304, 0.4188911704312115, 0.4197125256673511, 0.42012320328542097, 0.4151950718685832, 0.41437371663244355, 0.4151950718685832, 0.41560574948665296, 0.41560574948665296, 0.40944558521560576, 0.4086242299794661, 0.40944558521560576, 0.40944558521560576, 0.41232032854209444, 0.4106776180698152, 0.41190965092402465, 0.4139630390143737, 0.41478439425051333, 0.41478439425051333, 0.4151950718685832, 0.41437371663244355, 0.411088295687885, 0.41232032854209444, 0.4127310061601643, 0.9125256673511294, 0.4238193018480493, 0.41806981519507186, 0.41232032854209444, 0.41190965092402465, 0.4127310061601643, 0.41314168377823407, 0.41314168377823407, 0.4106776180698152, 0.4106776180698152, 0.4135523613963039, 0.4114989733059548, 0.4102669404517454, 0.4114989733059548, 0.41232032854209444, 0.41560574948665296, 0.41765913757700207, 0.41765913757700207, 0.41765913757700207, 0.41314168377823407, 0.4127310061601643, 0.4135523613963039, 0.4164271047227926, 0.4164271047227926, 0.4160164271047228, 0.41683778234086244, 0.41930184804928133, 0.42012320328542097, 0.42012320328542097, 0.42012320328542097, 0.42176591375770023, 0.8209445585215606, 0.4308008213552361, 0.4160164271047228, 0.41806981519507186, 0.4139630390143737, 0.41437371663244355, 0.41232032854209444, 0.4106776180698152, 0.4106776180698152, 0.4102669404517454, 0.4102669404517454, 0.4151950718685832, 0.4160164271047228, 0.4238193018480493, 0.42505133470225875, 0.4833675564681725, 0.4308008213552361, 0.448870636550308, 0.4262833675564682, 0.44599589322381933, 0.45544147843942506, 0.49322381930184805, 0.45790554414784396, 0.4344969199178645, 0.42874743326488707, 0.4242299794661191, 0.42587268993839833, 0.42669404517453796, 0.42587268993839833, 0.4262833675564682, 0.42792607802874744, 0.4271047227926078, 0.4275154004106776, 0.4238193018480493, 0.4238193018480493, 0.4209445585215606, 0.42053388090349075, 0.4188911704312115, 0.4172484599589322, 0.41478439425051333, 0.41437371663244355, 0.41190965092402465, 0.4139630390143737, 0.4164271047227926, 0.41190965092402465, 0.40985626283367554, 0.40616016427104723, 0.40739219712525665, 0.40698151950718686, 0.40739219712525665, 0.4082135523613963, 0.4086242299794661, 0.4086242299794661, 0.4086242299794661, 0.4078028747433265, 0.39507186858316223, 0.3942505133470226, 0.3942505133470226, 0.3942505133470226, 0.395482546201232, 0.3967145790554415, 0.39876796714579055, 0.4028747433264887, 0.40492813141683776, 0.40492813141683776, 0.40082135523613965, 0.3991786447638604, 0.39630390143737165, 0.3930184804928131, 0.3864476386036961, 0.38562628336755644, 0.3786447638603696, 0.37700205338809034, 0.3761806981519507, 0.3757700205338809, 0.3782340862422998, 0.38028747433264887, 0.37946611909650924, 0.38028747433264887, 0.3811088295687885, 0.3774127310061602, 0.37946611909650924, 0.3798767967145791, 0.3782340862422998, 0.38028747433264887, 0.3798767967145791, 0.3798767967145791, 0.4041067761806982, 0.3893223819301848, 0.3839835728952772, 0.38562628336755644, 0.38316221765913755, 0.384394250513347, 0.3872689938398357, 0.3872689938398357, 0.38767967145790555, 0.3868583162217659, 0.3868583162217659, 0.3868583162217659, 0.38193018480492813, 0.3798767967145791, 0.37946611909650924, 0.38028747433264887, 0.3806981519507187, 0.38193018480492813, 0.384394250513347, 0.3872689938398357, 0.38809034907597534, 0.3897330595482546, 0.3909650924024641, 0.3921971252566735, 0.3917864476386037, 0.39260780287474334, 0.39260780287474334, 0.3942505133470226, 0.38767967145790555, 0.38767967145790555, 0.3864476386036961, 0.3848049281314168, 0.38521560574948666, 0.38767967145790555, 0.3885010266940452, 0.3921971252566735, 0.39055441478439423, 0.39260780287474334, 0.3930184804928131, 0.3930184804928131, 0.39137577002053386, 0.3909650924024641, 0.39137577002053386, 0.38891170431211497, 0.38809034907597534, 0.39055441478439423, 0.3868583162217659, 0.3868583162217659, 0.38809034907597534, 0.3885010266940452, 0.3864476386036961, 0.38562628336755644, 0.3848049281314168, 0.3979466119096509, 0.38562628336755644, 0.38521560574948666, 0.3860369609856263, 0.9170431211498973, 0.3839835728952772, 0.384394250513347, 0.38275154004106776, 0.38316221765913755, 0.3868583162217659, 0.3860369609856263, 0.3860369609856263, 0.38275154004106776, 0.3786447638603696, 0.37946611909650924, 0.3798767967145791, 0.38193018480492813, 0.3786447638603696, 0.40492813141683776, 0.38275154004106776, 0.37905544147843945, 0.37700205338809034, 0.3757700205338809, 0.37412731006160166, 0.37453798767967145, 0.3782340862422998, 0.373305954825462, 0.3737166324435318, 0.3749486652977413, 0.37412731006160166, 0.37412731006160166, 0.373305954825462, 0.3728952772073922, 0.3737166324435318, 0.36837782340862424, 0.3675564681724846, 0.36632443531827513, 0.36632443531827513, 0.36714579055441476, 0.36591375770020534, 0.3675564681724846, 0.368788501026694, 0.36837782340862424, 0.36919917864476387, 0.3728952772073922, 0.3737166324435318, 0.3749486652977413, 0.3749486652977413, 0.37700205338809034, 0.3864476386036961, 0.39753593429158113, 0.39260780287474334, 0.39342915811088297, 0.3946611909650924, 0.3967145790554415, 0.3971252566735113, 0.39753593429158113, 0.3991786447638604, 0.40492813141683776, 0.40616016427104723, 0.4139630390143737, 0.4188911704312115, 0.4209445585215606, 0.42258726899383986, 0.42546201232032854, 0.4283367556468172, 0.42915811088295686, 0.4308008213552361, 0.4324435318275154, 0.43655030800821354, 0.4427104722792608, 0.44845995893223817, 0.4537987679671458, 0.4648870636550308, 0.49609856262833674, 0.5030800821355236, 0.5515400410677618, 0.5679671457905544, 0.5782340862422998, 0.6160164271047228, 0.8303901437371664], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/TrbC_Ftype.gap.json b/pfam_gap_rates/TrbC_Ftype.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d4a37e6f79597717988a64342e192b4d676f58ab
--- /dev/null
+++ b/pfam_gap_rates/TrbC_Ftype.gap.json
@@ -0,0 +1 @@
+{"family": "TrbC_Ftype", "n_seqs": 100, "length": 136, "gap_rates": [0.17, 0.05, 0.04, 0.04, 0.04, 0.04, 0.03, 0.03, 0.03, 0.02, 0.02, 0.02, 0.02, 0.02, 0.02, 0.02, 0.02, 0.02, 0.01, 0.01, 0.01, 0.01, 0.01, 0.01, 0.81, 0.94, 0.95, 0.84, 0.77, 0.02, 0.01, 0.01, 0.01, 0.01, 0.01, 0.01, 0.01, 0.01, 0.01, 0.61, 0.7, 0.02, 0.02, 0.02, 0.02, 0.01, 0.01, 0.01, 0.01, 0.01, 0.01, 0.01, 0.01, 0.01, 0.01, 0.01, 0.67, 0.72, 0.74, 0.74, 0.85, 0.95, 0.88, 0.75, 0.74, 0.73, 0.68, 0.66, 0.46, 0.27, 0.13, 0.09, 0.07, 0.07, 0.01, 0.01, 0.01, 0.01, 0.01, 0.01, 0.0, 0.0, 0.0, 0.01, 0.02, 0.01, 0.01, 0.01, 0.01, 0.01, 0.01, 0.01, 0.01, 0.02, 0.02, 0.02, 0.03, 0.04, 0.08, 0.11, 0.15, 0.17, 0.24, 0.34, 0.78, 0.87, 0.95, 0.85, 0.66, 0.3, 0.31, 0.3, 0.29, 0.28, 0.27, 0.34, 0.3, 0.3, 0.75, 0.26, 0.25, 0.26, 0.26, 0.25, 0.25, 0.25, 0.26, 0.26, 0.26, 0.28, 0.29, 0.29, 0.29, 0.31, 0.42, 0.69], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Trehalase_Ca-bi.gap.json b/pfam_gap_rates/Trehalase_Ca-bi.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..fcb451fdef29b37e70b0175296f7dfad52dad1ac
--- /dev/null
+++ b/pfam_gap_rates/Trehalase_Ca-bi.gap.json
@@ -0,0 +1 @@
+{"family": "Trehalase_Ca-bi", "n_seqs": 157, "length": 30, "gap_rates": [0.2356687898089172, 0.07643312101910828, 0.03184713375796178, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.012738853503184714, 0.012738853503184714, 0.012738853503184714, 0.012738853503184714, 0.05732484076433121, 0.08917197452229299], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Trp_DMAT.gap.json b/pfam_gap_rates/Trp_DMAT.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..2090e9845dce5de616b525858ea3b7f91e4bdd5e
--- /dev/null
+++ b/pfam_gap_rates/Trp_DMAT.gap.json
@@ -0,0 +1 @@
+{"family": "Trp_DMAT", "n_seqs": 157, "length": 425, "gap_rates": [0.5987261146496815, 0.47770700636942676, 0.4012738853503185, 0.31210191082802546, 0.31210191082802546, 0.3057324840764331, 0.3057324840764331, 0.2929936305732484, 0.28662420382165604, 0.28662420382165604, 0.28662420382165604, 0.2802547770700637, 0.2802547770700637, 0.2802547770700637, 0.27388535031847133, 0.25477707006369427, 0.25477707006369427, 0.25477707006369427, 0.25477707006369427, 0.25477707006369427, 0.25477707006369427, 0.8535031847133758, 0.25477707006369427, 0.25477707006369427, 0.25477707006369427, 0.25477707006369427, 0.25477707006369427, 0.25477707006369427, 0.25477707006369427, 0.25477707006369427, 0.25477707006369427, 0.2484076433121019, 0.24203821656050956, 0.24203821656050956, 0.24203821656050956, 0.24203821656050956, 0.21656050955414013, 0.22929936305732485, 0.20382165605095542, 0.20382165605095542, 0.21019108280254778, 0.21019108280254778, 0.19745222929936307, 0.19745222929936307, 0.19745222929936307, 0.19745222929936307, 0.1910828025477707, 0.8980891719745223, 0.7070063694267515, 0.2611464968152866, 0.4267515923566879, 0.4267515923566879, 0.3184713375796178, 0.7515923566878981, 0.8789808917197452, 0.9363057324840764, 0.821656050955414, 0.6815286624203821, 0.2929936305732484, 0.24203821656050956, 0.22929936305732485, 0.17197452229299362, 0.1464968152866242, 0.1464968152866242, 0.14012738853503184, 0.1337579617834395, 0.12738853503184713, 0.1337579617834395, 0.1337579617834395, 0.12738853503184713, 0.15286624203821655, 0.1337579617834395, 0.1337579617834395, 0.1337579617834395, 0.11464968152866242, 0.11464968152866242, 0.11464968152866242, 0.11464968152866242, 0.11464968152866242, 0.12101910828025478, 0.6560509554140127, 0.3821656050955414, 0.9426751592356688, 0.9426751592356688, 0.9426751592356688, 0.9299363057324841, 0.554140127388535, 0.40764331210191085, 0.2229299363057325, 0.10828025477707007, 0.10191082802547771, 0.10828025477707007, 0.10828025477707007, 0.10828025477707007, 0.10828025477707007, 0.10828025477707007, 0.10828025477707007, 0.11464968152866242, 0.12738853503184713, 0.12101910828025478, 0.12738853503184713, 0.12738853503184713, 0.12101910828025478, 0.1337579617834395, 0.15286624203821655, 0.9426751592356688, 0.21019108280254778, 0.20382165605095542, 0.24203821656050956, 0.20382165605095542, 0.1910828025477707, 0.19745222929936307, 0.17197452229299362, 0.1464968152866242, 0.10828025477707007, 0.10828025477707007, 0.10828025477707007, 0.10828025477707007, 0.10828025477707007, 0.10191082802547771, 0.10191082802547771, 0.12101910828025478, 0.12101910828025478, 0.12101910828025478, 0.12101910828025478, 0.12101910828025478, 0.267515923566879, 0.9426751592356688, 0.8598726114649682, 0.6050955414012739, 0.16560509554140126, 0.08917197452229299, 0.08917197452229299, 0.08917197452229299, 0.08917197452229299, 0.10828025477707007, 0.10828025477707007, 0.10191082802547771, 0.10191082802547771, 0.10191082802547771, 0.09554140127388536, 0.09554140127388536, 0.09554140127388536, 0.09554140127388536, 0.09554140127388536, 0.9426751592356688, 0.1337579617834395, 0.9426751592356688, 0.9490445859872612, 0.9299363057324841, 0.2802547770700637, 0.22929936305732485, 0.12101910828025478, 0.10191082802547771, 0.1337579617834395, 0.1337579617834395, 0.15286624203821655, 0.15286624203821655, 0.14012738853503184, 0.5031847133757962, 0.6560509554140127, 0.89171974522293, 0.9490445859872612, 0.8343949044585988, 0.5414012738853503, 0.4394904458598726, 0.3821656050955414, 0.36942675159235666, 0.3248407643312102, 0.2929936305732484, 0.2484076433121019, 0.22929936305732485, 0.21656050955414013, 0.19745222929936307, 0.1464968152866242, 0.9299363057324841, 0.9426751592356688, 0.9426751592356688, 0.9490445859872612, 0.9490445859872612, 0.9426751592356688, 0.9426751592356688, 0.9426751592356688, 0.9235668789808917, 0.10828025477707007, 0.10828025477707007, 0.10191082802547771, 0.10191082802547771, 0.10191082802547771, 0.09554140127388536, 0.09554140127388536, 0.10191082802547771, 0.535031847133758, 0.9235668789808917, 0.2802547770700637, 0.12738853503184713, 0.12738853503184713, 0.09554140127388536, 0.09554140127388536, 0.09554140127388536, 0.09554140127388536, 0.09554140127388536, 0.10191082802547771, 0.10191082802547771, 0.10191082802547771, 0.10828025477707007, 0.11464968152866242, 0.10828025477707007, 0.11464968152866242, 0.11464968152866242, 0.2356687898089172, 0.21656050955414013, 0.2229299363057325, 0.14012738853503184, 0.12738853503184713, 0.9490445859872612, 0.9363057324840764, 0.11464968152866242, 0.11464968152866242, 0.10828025477707007, 0.11464968152866242, 0.11464968152866242, 0.11464968152866242, 0.11464968152866242, 0.11464968152866242, 0.11464968152866242, 0.11464968152866242, 0.11464968152866242, 0.11464968152866242, 0.12101910828025478, 0.910828025477707, 0.9490445859872612, 0.9426751592356688, 0.8280254777070064, 0.37579617834394907, 0.42038216560509556, 0.5987261146496815, 0.4267515923566879, 0.33121019108280253, 0.16560509554140126, 0.1592356687898089, 0.14012738853503184, 0.14012738853503184, 0.1337579617834395, 0.1337579617834395, 0.12738853503184713, 0.12101910828025478, 0.11464968152866242, 0.11464968152866242, 0.12101910828025478, 0.12738853503184713, 0.12738853503184713, 0.12101910828025478, 0.15286624203821655, 0.15286624203821655, 0.9044585987261147, 0.9299363057324841, 0.9426751592356688, 0.9363057324840764, 0.9235668789808917, 0.8152866242038217, 0.4840764331210191, 0.40764331210191085, 0.20382165605095542, 0.1592356687898089, 0.1337579617834395, 0.15286624203821655, 0.10828025477707007, 0.10191082802547771, 0.10191082802547771, 0.10191082802547771, 0.10191082802547771, 0.10191082802547771, 0.10191082802547771, 0.10191082802547771, 0.10191082802547771, 0.10191082802547771, 0.10828025477707007, 0.11464968152866242, 0.9235668789808917, 0.11464968152866242, 0.9299363057324841, 0.10191082802547771, 0.10191082802547771, 0.10191082802547771, 0.10191082802547771, 0.10191082802547771, 0.10191082802547771, 0.10191082802547771, 0.10191082802547771, 0.10191082802547771, 0.910828025477707, 0.10191082802547771, 0.10191082802547771, 0.10191082802547771, 0.10191082802547771, 0.10191082802547771, 0.10191082802547771, 0.10191082802547771, 0.10191082802547771, 0.10191082802547771, 0.10828025477707007, 0.10828025477707007, 0.11464968152866242, 0.11464968152866242, 0.12101910828025478, 0.12101910828025478, 0.12738853503184713, 0.12101910828025478, 0.11464968152866242, 0.11464968152866242, 0.9044585987261147, 0.25477707006369427, 0.2611464968152866, 0.1910828025477707, 0.1592356687898089, 0.1592356687898089, 0.15286624203821655, 0.1464968152866242, 0.1464968152866242, 0.14012738853503184, 0.11464968152866242, 0.11464968152866242, 0.11464968152866242, 0.10828025477707007, 0.10828025477707007, 0.10828025477707007, 0.10828025477707007, 0.2802547770700637, 0.10828025477707007, 0.10828025477707007, 0.11464968152866242, 0.10828025477707007, 0.10828025477707007, 0.10191082802547771, 0.10191082802547771, 0.5987261146496815, 0.6624203821656051, 0.7834394904458599, 0.8726114649681529, 0.9299363057324841, 0.9171974522292994, 0.7961783439490446, 0.7070063694267515, 0.6496815286624203, 0.5668789808917197, 0.10828025477707007, 0.31210191082802546, 0.4713375796178344, 0.5923566878980892, 0.7006369426751592, 0.89171974522293, 0.9299363057324841, 0.821656050955414, 0.6560509554140127, 0.5095541401273885, 0.37579617834394907, 0.2929936305732484, 0.22929936305732485, 0.4012738853503185, 0.2929936305732484, 0.24203821656050956, 0.2229299363057325, 0.18471337579617833, 0.16560509554140126, 0.7770700636942676, 0.12738853503184713, 0.12101910828025478, 0.11464968152866242, 0.10828025477707007, 0.10828025477707007, 0.12101910828025478, 0.10828025477707007, 0.10828025477707007, 0.10191082802547771, 0.10191082802547771, 0.10828025477707007, 0.10191082802547771, 0.10191082802547771, 0.10191082802547771, 0.10828025477707007, 0.9426751592356688, 0.12738853503184713, 0.1337579617834395, 0.10828025477707007, 0.9426751592356688, 0.10828025477707007, 0.10191082802547771, 0.10191082802547771, 0.10191082802547771, 0.10828025477707007, 0.10828025477707007, 0.10828025477707007, 0.10828025477707007, 0.2929936305732484, 0.2929936305732484, 0.11464968152866242, 0.11464968152866242, 0.11464968152866242, 0.11464968152866242, 0.11464968152866242, 0.11464968152866242, 0.11464968152866242, 0.11464968152866242, 0.11464968152866242, 0.11464968152866242, 0.11464968152866242, 0.11464968152866242, 0.11464968152866242, 0.11464968152866242, 0.11464968152866242, 0.12738853503184713, 0.14012738853503184, 0.1464968152866242, 0.1592356687898089, 0.2356687898089172, 0.2611464968152866, 0.34394904458598724, 0.3375796178343949, 0.35668789808917195, 0.39490445859872614, 0.4140127388535032, 0.47770700636942676, 0.5159235668789809, 0.7133757961783439], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/TrwC.gap.json b/pfam_gap_rates/TrwC.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ed6a36a54e28f80cc142bab0fda049dcdc20f241
--- /dev/null
+++ b/pfam_gap_rates/TrwC.gap.json
@@ -0,0 +1 @@
+{"family": "TrwC", "n_seqs": 310, "length": 445, "gap_rates": [0.6838709677419355, 0.532258064516129, 0.4096774193548387, 0.31290322580645163, 0.2838709677419355, 0.25483870967741934, 0.24516129032258063, 0.24193548387096775, 0.23870967741935484, 0.24193548387096775, 0.2806451612903226, 0.4258064516129032, 0.4096774193548387, 0.4774193548387097, 0.46774193548387094, 0.5, 0.5419354838709678, 0.6451612903225806, 0.6806451612903226, 0.7096774193548387, 0.7225806451612903, 0.7322580645161291, 0.7225806451612903, 0.6967741935483871, 0.667741935483871, 0.635483870967742, 0.18064516129032257, 0.18064516129032257, 0.18064516129032257, 0.18064516129032257, 0.17096774193548386, 0.8580645161290322, 0.9451612903225807, 0.8838709677419355, 0.7709677419354839, 0.2870967741935484, 0.2, 0.1870967741935484, 0.16451612903225807, 0.16451612903225807, 0.15806451612903225, 0.15806451612903225, 0.15483870967741936, 0.15806451612903225, 0.15483870967741936, 0.14838709677419354, 0.15161290322580645, 0.14516129032258066, 0.14193548387096774, 0.14193548387096774, 0.14516129032258066, 0.14193548387096774, 0.8225806451612904, 0.9193548387096774, 0.9483870967741935, 0.8354838709677419, 0.7741935483870968, 0.17096774193548386, 0.13870967741935483, 0.6806451612903226, 0.12903225806451613, 0.6225806451612903, 0.11935483870967742, 0.1, 0.0967741935483871, 0.0967741935483871, 0.0967741935483871, 0.0967741935483871, 0.0967741935483871, 0.0967741935483871, 0.0967741935483871, 0.0967741935483871, 0.0967741935483871, 0.7032258064516129, 0.0935483870967742, 0.0935483870967742, 0.0935483870967742, 0.0935483870967742, 0.10967741935483871, 0.32903225806451614, 0.864516129032258, 0.867741935483871, 0.867741935483871, 0.8709677419354839, 0.8774193548387097, 0.9096774193548387, 0.9129032258064517, 0.9193548387096774, 0.9193548387096774, 0.9193548387096774, 0.9193548387096774, 0.9129032258064517, 0.9096774193548387, 0.8806451612903226, 0.8774193548387097, 0.867741935483871, 0.867741935483871, 0.864516129032258, 0.8612903225806452, 0.13225806451612904, 0.12258064516129032, 0.11935483870967742, 0.11935483870967742, 0.11612903225806452, 0.11290322580645161, 0.11612903225806452, 0.2032258064516129, 0.2064516129032258, 0.21935483870967742, 0.3032258064516129, 0.47419354838709676, 0.8419354838709677, 0.9064516129032258, 0.9290322580645162, 0.9354838709677419, 0.932258064516129, 0.9193548387096774, 0.8741935483870967, 0.8161290322580645, 0.45161290322580644, 0.7354838709677419, 0.7354838709677419, 0.7387096774193549, 0.7387096774193549, 0.7387096774193549, 0.7387096774193549, 0.7387096774193549, 0.7387096774193549, 0.7387096774193549, 0.7419354838709677, 0.7419354838709677, 0.7451612903225806, 0.7451612903225806, 0.7483870967741936, 0.7483870967741936, 0.7548387096774194, 0.7709677419354839, 0.7741935483870968, 0.8483870967741935, 0.864516129032258, 0.864516129032258, 0.864516129032258, 0.864516129032258, 0.864516129032258, 0.864516129032258, 0.864516129032258, 0.8709677419354839, 0.8709677419354839, 0.8709677419354839, 0.8741935483870967, 0.8741935483870967, 0.8806451612903226, 0.9096774193548387, 0.9290322580645162, 0.9354838709677419, 0.9193548387096774, 0.9, 0.8774193548387097, 0.8741935483870967, 0.8709677419354839, 0.8709677419354839, 0.8709677419354839, 0.864516129032258, 0.864516129032258, 0.864516129032258, 0.864516129032258, 0.864516129032258, 0.864516129032258, 0.864516129032258, 0.8612903225806452, 0.8483870967741935, 0.7741935483870968, 0.7612903225806451, 0.7548387096774194, 0.7483870967741936, 0.7451612903225806, 0.7451612903225806, 0.7419354838709677, 0.7419354838709677, 0.7419354838709677, 0.7387096774193549, 0.7387096774193549, 0.7387096774193549, 0.7387096774193549, 0.7387096774193549, 0.7387096774193549, 0.7354838709677419, 0.7354838709677419, 0.7258064516129032, 0.5064516129032258, 0.4064516129032258, 0.8838709677419355, 0.15483870967741936, 0.054838709677419356, 0.054838709677419356, 0.054838709677419356, 0.05806451612903226, 0.05806451612903226, 0.05806451612903226, 0.05806451612903226, 0.05806451612903226, 0.05806451612903226, 0.05806451612903226, 0.05806451612903226, 0.2032258064516129, 0.05806451612903226, 0.8451612903225807, 0.05806451612903226, 0.06129032258064516, 0.06129032258064516, 0.06129032258064516, 0.06129032258064516, 0.06129032258064516, 0.06451612903225806, 0.06129032258064516, 0.06774193548387097, 0.06774193548387097, 0.16451612903225807, 0.06129032258064516, 0.05806451612903226, 0.054838709677419356, 0.4483870967741935, 0.43548387096774194, 0.4290322580645161, 0.05806451612903226, 0.05806451612903226, 0.05806451612903226, 0.05806451612903226, 0.054838709677419356, 0.054838709677419356, 0.05806451612903226, 0.05806451612903226, 0.06129032258064516, 0.06129032258064516, 0.06129032258064516, 0.06129032258064516, 0.06129032258064516, 0.05806451612903226, 0.05806451612903226, 0.05806451612903226, 0.06129032258064516, 0.06129032258064516, 0.14838709677419354, 0.06451612903225806, 0.06129032258064516, 0.07741935483870968, 0.1774193548387097, 0.05806451612903226, 0.05806451612903226, 0.05806451612903226, 0.8741935483870967, 0.896774193548387, 0.8032258064516129, 0.45483870967741935, 0.12903225806451613, 0.08709677419354839, 0.07419354838709677, 0.06774193548387097, 0.054838709677419356, 0.054838709677419356, 0.054838709677419356, 0.054838709677419356, 0.054838709677419356, 0.06129032258064516, 0.06451612903225806, 0.054838709677419356, 0.05806451612903226, 0.05806451612903226, 0.05806451612903226, 0.05806451612903226, 0.054838709677419356, 0.054838709677419356, 0.054838709677419356, 0.054838709677419356, 0.054838709677419356, 0.054838709677419356, 0.054838709677419356, 0.05806451612903226, 0.9354838709677419, 0.9354838709677419, 0.9483870967741935, 0.9354838709677419, 0.9354838709677419, 0.054838709677419356, 0.05806451612903226, 0.05806451612903226, 0.05806451612903226, 0.054838709677419356, 0.054838709677419356, 0.054838709677419356, 0.054838709677419356, 0.054838709677419356, 0.054838709677419356, 0.05161290322580645, 0.054838709677419356, 0.054838709677419356, 0.054838709677419356, 0.054838709677419356, 0.05806451612903226, 0.4838709677419355, 0.4774193548387097, 0.09032258064516129, 0.06774193548387097, 0.07419354838709677, 0.05806451612903226, 0.06129032258064516, 0.05806451612903226, 0.05806451612903226, 0.05806451612903226, 0.05806451612903226, 0.05806451612903226, 0.8870967741935484, 0.896774193548387, 0.896774193548387, 0.9064516129032258, 0.9290322580645162, 0.9064516129032258, 0.9064516129032258, 0.896774193548387, 0.896774193548387, 0.8870967741935484, 0.05806451612903226, 0.05806451612903226, 0.08387096774193549, 0.06129032258064516, 0.06451612903225806, 0.06451612903225806, 0.07096774193548387, 0.06129032258064516, 0.06129032258064516, 0.06451612903225806, 0.06774193548387097, 0.06774193548387097, 0.06774193548387097, 0.06451612903225806, 0.06774193548387097, 0.06774193548387097, 0.05806451612903226, 0.05806451612903226, 0.05806451612903226, 0.11290322580645161, 0.11612903225806452, 0.10967741935483871, 0.1064516129032258, 0.6258064516129033, 0.06129032258064516, 0.05806451612903226, 0.05806451612903226, 0.05806451612903226, 0.06774193548387097, 0.07096774193548387, 0.1032258064516129, 0.11290322580645161, 0.2064516129032258, 0.6967741935483871, 0.9354838709677419, 0.6645161290322581, 0.4483870967741935, 0.7096774193548387, 0.9419354838709677, 0.6774193548387096, 0.14516129032258066, 0.1064516129032258, 0.1064516129032258, 0.06774193548387097, 0.06451612903225806, 0.06451612903225806, 0.06451612903225806, 0.06774193548387097, 0.06451612903225806, 0.06451612903225806, 0.06451612903225806, 0.2, 0.0935483870967742, 0.0935483870967742, 0.08387096774193549, 0.06451612903225806, 0.06451612903225806, 0.06451612903225806, 0.06451612903225806, 0.06451612903225806, 0.06451612903225806, 0.06774193548387097, 0.06451612903225806, 0.06451612903225806, 0.06451612903225806, 0.06451612903225806, 0.06451612903225806, 0.06451612903225806, 0.06451612903225806, 0.06451612903225806, 0.06451612903225806, 0.47419354838709676, 0.4645161290322581, 0.46774193548387094, 0.45483870967741935, 0.3935483870967742, 0.8612903225806452, 0.41935483870967744, 0.4064516129032258, 0.3580645161290323, 0.14838709677419354, 0.14193548387096774, 0.09032258064516129, 0.07419354838709677, 0.07096774193548387, 0.07096774193548387, 0.09032258064516129, 0.08064516129032258, 0.08709677419354839, 0.08387096774193549, 0.07419354838709677, 0.5612903225806452, 0.5612903225806452, 0.5870967741935483, 0.5612903225806452, 0.5483870967741935, 0.07741935483870968, 0.08064516129032258, 0.08064516129032258, 0.07741935483870968, 0.08064516129032258, 0.08064516129032258, 0.08064516129032258, 0.08387096774193549, 0.08387096774193549, 0.4967741935483871, 0.1, 0.09032258064516129, 0.09032258064516129, 0.09032258064516129, 0.0935483870967742, 0.0967741935483871, 0.1, 0.10967741935483871, 0.13548387096774195, 0.12903225806451613, 0.12903225806451613, 0.11935483870967742, 0.11935483870967742, 0.12903225806451613, 0.13548387096774195, 0.16451612903225807, 0.24516129032258063, 0.5129032258064516], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Trypsin_2.gap.json b/pfam_gap_rates/Trypsin_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b5e7e5b681c91ee185b53400efdbd441b391db72
--- /dev/null
+++ b/pfam_gap_rates/Trypsin_2.gap.json
@@ -0,0 +1 @@
+{"family": "Trypsin_2", "n_seqs": 5000, "length": 192, "gap_rates": [0.092, 0.055, 0.048, 0.0448, 0.0434, 0.0426, 0.0416, 0.04, 0.0382, 0.9362, 0.0312, 0.835, 0.8536, 0.828, 0.1792, 0.028, 0.0274, 0.0268, 0.0268, 0.0272, 0.0268, 0.0264, 0.0262, 0.9498, 0.026, 0.055, 0.0544, 0.0538, 0.0528, 0.0532, 0.0534, 0.0386, 0.892, 0.9166, 0.935, 0.9476, 0.9262, 0.9078, 0.8804, 0.8374, 0.819, 0.805, 0.7838, 0.76, 0.7386, 0.7098, 0.6784, 0.5344, 0.0654, 0.0382, 0.0298, 0.0274, 0.0238, 0.0236, 0.0226, 0.0218, 0.0216, 0.0218, 0.0202, 0.9434, 0.0216, 0.024, 0.0234, 0.0238, 0.0234, 0.0922, 0.921, 0.9332, 0.941, 0.9446, 0.9372, 0.9302, 0.9118, 0.0188, 0.0136, 0.9114, 0.012, 0.0116, 0.0112, 0.0114, 0.0114, 0.0114, 0.0118, 0.8688, 0.92, 0.9306, 0.9084, 0.822, 0.7694, 0.6336, 0.3654, 0.032, 0.0178, 0.0146, 0.013, 0.0122, 0.0126, 0.0136, 0.0138, 0.0132, 0.0124, 0.0132, 0.014, 0.0624, 0.0572, 0.0648, 0.0304, 0.021, 0.0218, 0.0186, 0.1594, 0.0136, 0.0112, 0.0108, 0.0102, 0.0102, 0.0106, 0.01, 0.0828, 0.0218, 0.0312, 0.0302, 0.0308, 0.0352, 0.5694, 0.7384, 0.882, 0.9242, 0.9496, 0.9062, 0.8616, 0.02, 0.0202, 0.0196, 0.0192, 0.018, 0.0172, 0.0168, 0.0168, 0.0172, 0.0182, 0.019, 0.0174, 0.6808, 0.7938, 0.8856, 0.9408, 0.8416, 0.7548, 0.602, 0.5214, 0.389, 0.2706, 0.2342, 0.1644, 0.1234, 0.0798, 0.0696, 0.0564, 0.0514, 0.0318, 0.0352, 0.0194, 0.887, 0.93, 0.8348, 0.0172, 0.0178, 0.018, 0.018, 0.0216, 0.0184, 0.0532, 0.0444, 0.0192, 0.0228, 0.0242, 0.0214, 0.0218, 0.0214, 0.0216, 0.0234, 0.0482, 0.9286, 0.0444, 0.0472, 0.0524, 0.0564, 0.0598, 0.063, 0.0684, 0.088], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/TspO_MBR.gap.json b/pfam_gap_rates/TspO_MBR.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..60c13d2e70f3b9664a425a13caf106a6e46a15cf
--- /dev/null
+++ b/pfam_gap_rates/TspO_MBR.gap.json
@@ -0,0 +1 @@
+{"family": "TspO_MBR", "n_seqs": 1076, "length": 158, "gap_rates": [0.9117100371747212, 0.5037174721189591, 0.36152416356877326, 0.26394052044609667, 0.2184014869888476, 0.1895910780669145, 0.17843866171003717, 0.17007434944237917, 0.1570631970260223, 0.14591078066914498, 0.1449814126394052, 0.1412639405204461, 0.13940520446096655, 0.137546468401487, 0.13940520446096655, 0.9014869888475836, 0.13475836431226765, 0.137546468401487, 0.14033457249070633, 0.9488847583643123, 0.8643122676579925, 0.19052044609665428, 0.24814126394052044, 0.17286245353159851, 0.8847583643122676, 0.9488847583643123, 0.483271375464684, 0.10223048327137546, 0.09014869888475836, 0.06319702602230483, 0.06133828996282528, 0.05111524163568773, 0.048327137546468404, 0.04925650557620818, 0.047397769516728624, 0.04460966542750929, 0.04460966542750929, 0.03531598513011153, 0.03066914498141264, 0.03066914498141264, 0.03066914498141264, 0.02973977695167286, 0.02973977695167286, 0.02973977695167286, 0.02973977695167286, 0.028810408921933085, 0.07342007434944238, 0.028810408921933085, 0.027881040892193308, 0.027881040892193308, 0.02695167286245353, 0.02695167286245353, 0.02695167286245353, 0.02509293680297398, 0.032527881040892194, 0.027881040892193308, 0.016728624535315983, 0.016728624535315983, 0.016728624535315983, 0.016728624535315983, 0.016728624535315983, 0.019516728624535316, 0.023234200743494422, 0.02695167286245353, 0.026022304832713755, 0.016728624535315983, 0.024163568773234202, 0.03066914498141264, 0.04925650557620818, 0.1812267657992565, 0.44981412639405205, 0.8020446096654275, 0.8745353159851301, 0.8921933085501859, 0.9358736059479554, 0.8847583643122676, 0.845724907063197, 0.7026022304832714, 0.2611524163568773, 0.13289962825278812, 0.03531598513011153, 0.026022304832713755, 0.020446096654275093, 0.01858736059479554, 0.10037174721189591, 0.019516728624535316, 0.019516728624535316, 0.017657992565055763, 0.017657992565055763, 0.017657992565055763, 0.017657992565055763, 0.017657992565055763, 0.01858736059479554, 0.019516728624535316, 0.01858736059479554, 0.01858736059479554, 0.019516728624535316, 0.017657992565055763, 0.017657992565055763, 0.016728624535315983, 0.01858736059479554, 0.03438661710037175, 0.024163568773234202, 0.0604089219330855, 0.02137546468401487, 0.017657992565055763, 0.01858736059479554, 0.019516728624535316, 0.02137546468401487, 0.02137546468401487, 0.024163568773234202, 0.022304832713754646, 0.022304832713754646, 0.022304832713754646, 0.024163568773234202, 0.020446096654275093, 0.020446096654275093, 0.019516728624535316, 0.020446096654275093, 0.020446096654275093, 0.020446096654275093, 0.020446096654275093, 0.020446096654275093, 0.020446096654275093, 0.019516728624535316, 0.027881040892193308, 0.02509293680297398, 0.026022304832713755, 0.022304832713754646, 0.02137546468401487, 0.020446096654275093, 0.02137546468401487, 0.02973977695167286, 0.027881040892193308, 0.02509293680297398, 0.024163568773234202, 0.024163568773234202, 0.024163568773234202, 0.024163568773234202, 0.024163568773234202, 0.024163568773234202, 0.02509293680297398, 0.026022304832713755, 0.027881040892193308, 0.028810408921933085, 0.028810408921933085, 0.02973977695167286, 0.02973977695167286, 0.02973977695167286, 0.02973977695167286, 0.031598513011152414, 0.03345724907063197, 0.03717472118959108, 0.05297397769516728, 0.06319702602230483, 0.10687732342007435, 0.2815985130111524, 0.8940520446096655], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/TusA.gap.json b/pfam_gap_rates/TusA.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..3cb05b89aa959ca650ea0eb6d98651696b340657
--- /dev/null
+++ b/pfam_gap_rates/TusA.gap.json
@@ -0,0 +1 @@
+{"family": "TusA", "n_seqs": 1978, "length": 71, "gap_rates": [0.7027300303336703, 0.18402426693629928, 0.04954499494438827, 0.037917087967644085, 0.03538928210313448, 0.033367037411526794, 0.03286147623862487, 0.029828109201213347, 0.02679474216380182, 0.025278058645096056, 0.025278058645096056, 0.016683518705763397, 0.016177957532861477, 0.013650151668351871, 0.00910010111223458, 0.00910010111223458, 0.00910010111223458, 0.007583417593528817, 0.006066734074823054, 0.006572295247724975, 0.005561172901921132, 0.005561172901921132, 0.005055611729019211, 0.07836198179979778, 0.04600606673407482, 0.016683518705763397, 0.007583417593528817, 0.04600606673407482, 0.010616784630940344, 0.003538928210313448, 0.023255813953488372, 0.0020222446916076846, 0.0005055611729019212, 0.0005055611729019212, 0.0005055611729019212, 0.0005055611729019212, 0.0005055611729019212, 0.0015166835187057635, 0.0020222446916076846, 0.0020222446916076846, 0.0020222446916076846, 0.0010111223458038423, 0.0005055611729019212, 0.0005055611729019212, 0.0005055611729019212, 0.0005055611729019212, 0.0010111223458038423, 0.0010111223458038423, 0.0010111223458038423, 0.0020222446916076846, 0.003033367037411527, 0.003033367037411527, 0.00455005055611729, 0.1531850353892821, 0.008088978766430738, 0.009605662285136502, 0.012133468149646108, 0.04600606673407482, 0.034378159757330634, 0.8164812942366027, 0.034378159757330634, 0.03842264914054601, 0.044489383215369056, 0.05358948432760364, 0.05965621840242669, 0.0743174924165824, 0.08695652173913043, 0.11274014155712841, 0.14459049544994945, 0.2012133468149646, 0.37209302325581395], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/U3snoRNP10.gap.json b/pfam_gap_rates/U3snoRNP10.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c55e99534469d4433cc3aeb6eaa415bf149f0949
--- /dev/null
+++ b/pfam_gap_rates/U3snoRNP10.gap.json
@@ -0,0 +1 @@
+{"family": "U3snoRNP10", "n_seqs": 260, "length": 142, "gap_rates": [0.7230769230769231, 0.23076923076923078, 0.18846153846153846, 0.11923076923076924, 0.07692307692307693, 0.06538461538461539, 0.06153846153846154, 0.06153846153846154, 0.06153846153846154, 0.06153846153846154, 0.05384615384615385, 0.926923076923077, 0.9423076923076923, 0.9230769230769231, 0.046153846153846156, 0.05, 0.046153846153846156, 0.36153846153846153, 0.8269230769230769, 0.06538461538461539, 0.04230769230769231, 0.8769230769230769, 0.07307692307692308, 0.057692307692307696, 0.038461538461538464, 0.03461538461538462, 0.026923076923076925, 0.026923076923076925, 0.026923076923076925, 0.026923076923076925, 0.026923076923076925, 0.019230769230769232, 0.019230769230769232, 0.019230769230769232, 0.019230769230769232, 0.019230769230769232, 0.015384615384615385, 0.019230769230769232, 0.015384615384615385, 0.015384615384615385, 0.015384615384615385, 0.015384615384615385, 0.015384615384615385, 0.011538461538461539, 0.011538461538461539, 0.011538461538461539, 0.011538461538461539, 0.011538461538461539, 0.011538461538461539, 0.011538461538461539, 0.011538461538461539, 0.0038461538461538464, 0.0038461538461538464, 0.0038461538461538464, 0.0038461538461538464, 0.0038461538461538464, 0.011538461538461539, 0.011538461538461539, 0.07692307692307693, 0.03461538461538462, 0.8692307692307693, 0.8115384615384615, 0.015384615384615385, 0.015384615384615385, 0.019230769230769232, 0.019230769230769232, 0.026923076923076925, 0.03076923076923077, 0.011538461538461539, 0.8076923076923077, 0.8384615384615385, 0.8653846153846154, 0.8807692307692307, 0.8692307692307693, 0.8461538461538461, 0.8384615384615385, 0.8038461538461539, 0.011538461538461539, 0.011538461538461539, 0.011538461538461539, 0.011538461538461539, 0.015384615384615385, 0.015384615384615385, 0.015384615384615385, 0.015384615384615385, 0.9423076923076923, 0.9461538461538461, 0.9423076923076923, 0.011538461538461539, 0.03076923076923077, 0.011538461538461539, 0.06923076923076923, 0.8346153846153846, 0.9423076923076923, 0.8961538461538462, 0.6692307692307692, 0.04230769230769231, 0.026923076923076925, 0.03076923076923077, 0.026923076923076925, 0.026923076923076925, 0.03076923076923077, 0.026923076923076925, 0.03076923076923077, 0.03461538461538462, 0.03076923076923077, 0.03461538461538462, 0.038461538461538464, 0.038461538461538464, 0.038461538461538464, 0.07307692307692308, 0.06923076923076923, 0.06923076923076923, 0.9307692307692308, 0.9461538461538461, 0.9115384615384615, 0.07307692307692308, 0.06923076923076923, 0.06153846153846154, 0.05, 0.05, 0.05, 0.05384615384615385, 0.06153846153846154, 0.06153846153846154, 0.057692307692307696, 0.06153846153846154, 0.07307692307692308, 0.07307692307692308, 0.07307692307692308, 0.8615384615384616, 0.07307692307692308, 0.07307692307692308, 0.07307692307692308, 0.07307692307692308, 0.07692307692307693, 0.08076923076923077, 0.1, 0.1346153846153846, 0.19230769230769232, 0.31153846153846154, 0.7269230769230769], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/UCR_hinge.gap.json b/pfam_gap_rates/UCR_hinge.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..cf5763f175886bc77eb1ede86e90740888ffb7c0
--- /dev/null
+++ b/pfam_gap_rates/UCR_hinge.gap.json
@@ -0,0 +1 @@
+{"family": "UCR_hinge", "n_seqs": 336, "length": 72, "gap_rates": [0.10119047619047619, 0.0744047619047619, 0.05654761904761905, 0.047619047619047616, 0.044642857142857144, 0.03571428571428571, 0.02976190476190476, 0.017857142857142856, 0.017857142857142856, 0.017857142857142856, 0.5029761904761905, 0.43154761904761907, 0.01488095238095238, 0.008928571428571428, 0.008928571428571428, 0.008928571428571428, 0.008928571428571428, 0.008928571428571428, 0.008928571428571428, 0.008928571428571428, 0.005952380952380952, 0.005952380952380952, 0.005952380952380952, 0.005952380952380952, 0.005952380952380952, 0.005952380952380952, 0.005952380952380952, 0.005952380952380952, 0.008928571428571428, 0.008928571428571428, 0.008928571428571428, 0.008928571428571428, 0.026785714285714284, 0.05654761904761905, 0.0625, 0.8303571428571429, 0.8898809523809523, 0.9434523809523809, 0.9345238095238095, 0.8898809523809523, 0.7708333333333334, 0.7113095238095238, 0.5654761904761905, 0.047619047619047616, 0.041666666666666664, 0.005952380952380952, 0.005952380952380952, 0.005952380952380952, 0.005952380952380952, 0.005952380952380952, 0.011904761904761904, 0.011904761904761904, 0.047619047619047616, 0.0625, 0.041666666666666664, 0.050595238095238096, 0.050595238095238096, 0.05654761904761905, 0.05654761904761905, 0.05952380952380952, 0.0625, 0.06845238095238096, 0.07738095238095238, 0.09523809523809523, 0.13690476190476192, 0.14583333333333334, 0.1488095238095238, 0.15773809523809523, 0.16071428571428573, 0.16964285714285715, 0.17261904761904762, 0.2708333333333333], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/UPAR_LY6.gap.json b/pfam_gap_rates/UPAR_LY6.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..9fbba8757a5dd6eb55b8ef4403fbca448f6d5fed
--- /dev/null
+++ b/pfam_gap_rates/UPAR_LY6.gap.json
@@ -0,0 +1 @@
+{"family": "UPAR_LY6", "n_seqs": 408, "length": 90, "gap_rates": [0.09558823529411764, 0.09313725490196079, 0.0857843137254902, 0.08333333333333333, 0.08333333333333333, 0.2867647058823529, 0.2965686274509804, 0.7696078431372549, 0.1323529411764706, 0.10784313725490197, 0.08088235294117647, 0.07107843137254902, 0.0661764705882353, 0.0661764705882353, 0.06372549019607843, 0.05392156862745098, 0.5980392156862745, 0.8161764705882353, 0.7598039215686274, 0.375, 0.1323529411764706, 0.03676470588235294, 0.029411764705882353, 0.029411764705882353, 0.029411764705882353, 0.04411764705882353, 0.041666666666666664, 0.0392156862745098, 0.13725490196078433, 0.024509803921568627, 0.024509803921568627, 0.024509803921568627, 0.02696078431372549, 0.029411764705882353, 0.031862745098039214, 0.041666666666666664, 0.049019607843137254, 0.049019607843137254, 0.18872549019607843, 0.19362745098039216, 0.19362745098039216, 0.946078431372549, 0.8872549019607843, 0.20098039215686275, 0.15931372549019607, 0.10294117647058823, 0.08088235294117647, 0.07598039215686274, 0.05392156862745098, 0.05392156862745098, 0.056372549019607844, 0.058823529411764705, 0.058823529411764705, 0.058823529411764705, 0.32598039215686275, 0.3014705882352941, 0.07352941176470588, 0.07352941176470588, 0.07352941176470588, 0.7696078431372549, 0.9142156862745098, 0.946078431372549, 0.8725490196078431, 0.625, 0.3333333333333333, 0.2867647058823529, 0.13970588235294118, 0.1568627450980392, 0.14215686274509803, 0.13725490196078433, 0.13970588235294118, 0.15196078431372548, 0.17401960784313725, 0.16176470588235295, 0.16911764705882354, 0.18382352941176472, 0.19607843137254902, 0.24019607843137256, 0.19607843137254902, 0.17401960784313725, 0.9485294117647058, 0.20588235294117646, 0.22549019607843138, 0.2549019607843137, 0.27941176470588236, 0.3088235294117647, 0.3235294117647059, 0.3284313725490196, 0.3382352941176471, 0.3897058823529412], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/UPF0029.gap.json b/pfam_gap_rates/UPF0029.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..348175f2aa2a76352eab36e4f0f1e6d613fae4e1
--- /dev/null
+++ b/pfam_gap_rates/UPF0029.gap.json
@@ -0,0 +1 @@
+{"family": "UPF0029", "n_seqs": 1756, "length": 118, "gap_rates": [0.2101366742596811, 0.07061503416856492, 0.055239179954441914, 0.05239179954441914, 0.05125284738041002, 0.05011389521640091, 0.04783599088838269, 0.04669703872437358, 0.04669703872437358, 0.04555808656036447, 0.04441913439635535, 0.04328018223234624, 0.04669703872437358, 0.04669703872437358, 0.0489749430523918, 0.04726651480637813, 0.04726651480637813, 0.04328018223234624, 0.040432801822323464, 0.038154897494305236, 0.03758542141230068, 0.03758542141230068, 0.03758542141230068, 0.07004555808656036, 0.07004555808656036, 0.04783599088838269, 0.04726651480637813, 0.06605922551252848, 0.05466970387243736, 0.03018223234624146, 0.02562642369020501, 0.7682232346241458, 0.9157175398633257, 0.7642369020501139, 0.0244874715261959, 0.0244874715261959, 0.023917995444191344, 0.023917995444191344, 0.02334851936218679, 0.022779043280182234, 0.022209567198177675, 0.02164009111617312, 0.11958997722095673, 0.10250569476082004, 0.0979498861047836, 0.10136674259681093, 0.048405466970387244, 0.07061503416856492, 0.5216400911161732, 0.5472665148063781, 0.9100227790432802, 0.9310933940774487, 0.9424829157175398, 0.9493166287015945, 0.9367881548974943, 0.9197038724373576, 0.8735763097949886, 0.20671981776765375, 0.08656036446469248, 0.0683371298405467, 0.01765375854214123, 0.014236902050113895, 0.014236902050113895, 0.01366742596810934, 0.01366742596810934, 0.013097949886104784, 0.013097949886104784, 0.013097949886104784, 0.013097949886104784, 0.285876993166287, 0.2784738041002278, 0.013097949886104784, 0.01366742596810934, 0.01366742596810934, 0.01366742596810934, 0.011389521640091117, 0.011389521640091117, 0.01082004555808656, 0.00968109339407745, 0.010250569476082005, 0.011389521640091117, 0.013097949886104784, 0.015375854214123007, 0.01651480637813212, 0.014806378132118452, 0.01366742596810934, 0.014806378132118452, 0.017084282460136675, 0.01765375854214123, 0.014806378132118452, 0.014806378132118452, 0.017084282460136675, 0.018223234624145785, 0.019931662870159454, 0.021070615034168565, 0.022779043280182234, 0.022779043280182234, 0.03189066059225513, 0.029612756264236904, 0.026765375854214124, 0.02733485193621868, 0.02733485193621868, 0.02733485193621868, 0.027904328018223234, 0.027904328018223234, 0.029612756264236904, 0.27790432801822323, 0.029612756264236904, 0.030751708428246014, 0.03189066059225513, 0.03189066059225513, 0.033599088838268794, 0.034738041002277904, 0.0387243735763098, 0.05466970387243736, 0.09624145785876993, 0.1845102505694761, 0.4157175398633257], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/UPF0102.gap.json b/pfam_gap_rates/UPF0102.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..fa4bc833b0c5858bf95d2a253dbf1441d5765569
--- /dev/null
+++ b/pfam_gap_rates/UPF0102.gap.json
@@ -0,0 +1 @@
+{"family": "UPF0102", "n_seqs": 1804, "length": 97, "gap_rates": [0.13082039911308205, 0.04711751662971175, 0.046008869179600884, 0.036585365853658534, 0.03159645232815964, 0.028824833702882482, 0.026607538802660754, 0.024944567627494457, 0.024944567627494457, 0.02328159645232816, 0.022727272727272728, 0.020509977827051, 0.020509977827051, 0.020509977827051, 0.020509977827051, 0.019955654101995565, 0.017184035476718405, 0.01385809312638581, 0.012749445676274944, 0.01164079822616408, 0.01164079822616408, 0.012195121951219513, 0.011086474501108648, 0.010532150776053215, 0.009977827050997782, 0.938470066518847, 0.008314855875831485, 0.008314855875831485, 0.007760532150776054, 0.0066518847006651885, 0.006097560975609756, 0.006097560975609756, 0.005543237250554324, 0.007206208425720621, 0.917960088691796, 0.8519955654101996, 0.005543237250554324, 0.004988913525498891, 0.005543237250554324, 0.003880266075388027, 0.0011086474501108647, 0.0011086474501108647, 0.0011086474501108647, 0.0011086474501108647, 0.0022172949002217295, 0.002771618625277162, 0.002771618625277162, 0.002771618625277162, 0.0033259423503325942, 0.043237250554323724, 0.10033259423503325, 0.09312638580931264, 0.057649667405764965, 0.052106430155210645, 0.03048780487804878, 0.9434589800443459, 0.015521064301552107, 0.011086474501108648, 0.011086474501108648, 0.012749445676274944, 0.013303769401330377, 0.01385809312638581, 0.012749445676274944, 0.012749445676274944, 0.012749445676274944, 0.012749445676274944, 0.013303769401330377, 0.01385809312638581, 0.014966740576496674, 0.015521064301552107, 0.017738359201773836, 0.018292682926829267, 0.019955654101995565, 0.018292682926829267, 0.018847006651884702, 0.019401330376940133, 0.019955654101995565, 0.022172949002217297, 0.03159645232815964, 0.03824833702882483, 0.041019955654102, 0.05321507760532151, 0.2771618625277162, 0.9074279379157428, 0.6263858093126385, 0.07095343680709534, 0.04212860310421286, 0.03824833702882483, 0.03270509977827051, 0.02827050997782705, 0.02827050997782705, 0.04212860310421286, 0.046008869179600884, 0.05155210643015521, 0.05598669623059867, 0.09312638580931264, 0.23891352549889136], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/UPF0139.gap.json b/pfam_gap_rates/UPF0139.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..93107927edcc9386b89f7fd1e2abefce35976550
--- /dev/null
+++ b/pfam_gap_rates/UPF0139.gap.json
@@ -0,0 +1 @@
+{"family": "UPF0139", "n_seqs": 220, "length": 102, "gap_rates": [0.45454545454545453, 0.20454545454545456, 0.17727272727272728, 0.16818181818181818, 0.15454545454545454, 0.1318181818181818, 0.12727272727272726, 0.12727272727272726, 0.11818181818181818, 0.10909090909090909, 0.10909090909090909, 0.10454545454545454, 0.1, 0.1, 0.1, 0.08636363636363636, 0.08636363636363636, 0.09545454545454546, 0.09545454545454546, 0.10454545454545454, 0.12272727272727273, 0.7454545454545455, 0.95, 0.8363636363636363, 0.7, 0.6090909090909091, 0.5181818181818182, 0.32727272727272727, 0.2909090909090909, 0.09545454545454546, 0.05454545454545454, 0.05, 0.045454545454545456, 0.04090909090909091, 0.045454545454545456, 0.045454545454545456, 0.045454545454545456, 0.04090909090909091, 0.05, 0.05, 0.045454545454545456, 0.045454545454545456, 0.04090909090909091, 0.03636363636363636, 0.04090909090909091, 0.031818181818181815, 0.01818181818181818, 0.01818181818181818, 0.01818181818181818, 0.013636363636363636, 0.031818181818181815, 0.031818181818181815, 0.031818181818181815, 0.031818181818181815, 0.031818181818181815, 0.031818181818181815, 0.031818181818181815, 0.031818181818181815, 0.03636363636363636, 0.03636363636363636, 0.04090909090909091, 0.04090909090909091, 0.03636363636363636, 0.04090909090909091, 0.045454545454545456, 0.05454545454545454, 0.05454545454545454, 0.1, 0.09545454545454546, 0.05909090909090909, 0.05909090909090909, 0.06363636363636363, 0.9, 0.6227272727272727, 0.06363636363636363, 0.06363636363636363, 0.06363636363636363, 0.06818181818181818, 0.07272727272727272, 0.06818181818181818, 0.07272727272727272, 0.07727272727272727, 0.08181818181818182, 0.08636363636363636, 0.12727272727272726, 0.12727272727272726, 0.12727272727272726, 0.12727272727272726, 0.12727272727272726, 0.12727272727272726, 0.1318181818181818, 0.13636363636363635, 0.14545454545454545, 0.14545454545454545, 0.1590909090909091, 0.33636363636363636, 0.4636363636363636, 0.4772727272727273, 0.5181818181818182, 0.5681818181818182, 0.6136363636363636, 0.8454545454545455], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/UPF0160.gap.json b/pfam_gap_rates/UPF0160.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c485ca8b0ab5934388784f51df68f1594df0df00
--- /dev/null
+++ b/pfam_gap_rates/UPF0160.gap.json
@@ -0,0 +1 @@
+{"family": "UPF0160", "n_seqs": 564, "length": 354, "gap_rates": [0.7322695035460993, 0.22340425531914893, 0.1595744680851064, 0.14893617021276595, 0.14893617021276595, 0.14893617021276595, 0.14716312056737588, 0.14184397163120568, 0.1400709219858156, 0.1400709219858156, 0.13829787234042554, 0.1347517730496454, 0.13297872340425532, 0.13120567375886524, 0.13120567375886524, 0.13120567375886524, 0.13120567375886524, 0.12943262411347517, 0.12056737588652482, 0.12234042553191489, 0.12234042553191489, 0.12234042553191489, 0.9468085106382979, 0.12234042553191489, 0.35106382978723405, 0.3262411347517731, 0.1595744680851064, 0.14893617021276595, 0.11524822695035461, 0.11879432624113476, 0.11702127659574468, 0.11702127659574468, 0.11702127659574468, 0.11879432624113476, 0.12411347517730496, 0.12056737588652482, 0.13120567375886524, 0.1276595744680851, 0.11879432624113476, 0.11879432624113476, 0.11524822695035461, 0.11347517730496454, 0.11347517730496454, 0.11170212765957446, 0.1099290780141844, 0.9095744680851063, 0.1099290780141844, 0.1099290780141844, 0.10638297872340426, 0.10638297872340426, 0.10638297872340426, 0.10638297872340426, 0.10638297872340426, 0.1773049645390071, 0.1773049645390071, 0.17907801418439717, 0.17907801418439717, 0.17907801418439717, 0.18262411347517732, 0.1524822695035461, 0.10460992907801418, 0.10460992907801418, 0.10460992907801418, 0.10638297872340426, 0.10460992907801418, 0.10460992907801418, 0.11347517730496454, 0.11347517730496454, 0.24822695035460993, 0.13120567375886524, 0.13297872340425532, 0.13297872340425532, 0.13652482269503546, 0.13120567375886524, 0.14716312056737588, 0.13829787234042554, 0.7907801418439716, 0.8120567375886525, 0.9397163120567376, 0.8563829787234043, 0.7978723404255319, 0.7695035460992907, 0.46631205673758863, 0.34574468085106386, 0.11702127659574468, 0.11524822695035461, 0.10815602836879433, 0.10638297872340426, 0.10638297872340426, 0.10638297872340426, 0.10638297872340426, 0.10460992907801418, 0.10460992907801418, 0.10283687943262411, 0.09929078014184398, 0.10283687943262411, 0.10283687943262411, 0.10460992907801418, 0.10283687943262411, 0.10460992907801418, 0.10638297872340426, 0.10460992907801418, 0.10460992907801418, 0.10460992907801418, 0.1099290780141844, 0.3670212765957447, 0.34929078014184395, 0.3351063829787234, 0.2801418439716312, 0.8617021276595744, 0.9113475177304965, 0.9414893617021277, 0.9042553191489362, 0.8226950354609929, 0.3191489361702128, 0.2624113475177305, 0.2624113475177305, 0.2553191489361702, 0.25354609929078015, 0.25886524822695034, 0.23049645390070922, 0.15425531914893617, 0.12234042553191489, 0.10283687943262411, 0.10106382978723404, 0.0975177304964539, 0.0975177304964539, 0.0975177304964539, 0.09574468085106383, 0.09219858156028368, 0.09219858156028368, 0.09219858156028368, 0.09219858156028368, 0.09042553191489362, 0.09042553191489362, 0.09219858156028368, 0.09219858156028368, 0.09219858156028368, 0.09397163120567376, 0.09397163120567376, 0.09397163120567376, 0.09397163120567376, 0.09397163120567376, 0.19680851063829788, 0.20390070921985815, 0.19326241134751773, 0.5195035460992907, 0.8226950354609929, 0.849290780141844, 0.8670212765957447, 0.8670212765957447, 0.8581560283687943, 0.8333333333333334, 0.6187943262411347, 0.2978723404255319, 0.25, 0.19858156028368795, 0.19326241134751773, 0.21631205673758866, 0.19326241134751773, 0.18262411347517732, 0.13652482269503546, 0.13297872340425532, 0.7606382978723404, 0.10460992907801418, 0.10460992907801418, 0.10460992907801418, 0.10638297872340426, 0.10638297872340426, 0.10460992907801418, 0.10638297872340426, 0.10638297872340426, 0.10638297872340426, 0.10638297872340426, 0.10638297872340426, 0.17553191489361702, 0.18617021276595744, 0.17553191489361702, 0.15425531914893617, 0.8333333333333334, 0.874113475177305, 0.8847517730496454, 0.8847517730496454, 0.8670212765957447, 0.7464539007092199, 0.49113475177304966, 0.4237588652482269, 0.23049645390070922, 0.12411347517730496, 0.12234042553191489, 0.12234042553191489, 0.11170212765957446, 0.10460992907801418, 0.10460992907801418, 0.10283687943262411, 0.10460992907801418, 0.10283687943262411, 0.10460992907801418, 0.10283687943262411, 0.0975177304964539, 0.0975177304964539, 0.09574468085106383, 0.09397163120567376, 0.09397163120567376, 0.09397163120567376, 0.10106382978723404, 0.09574468085106383, 0.09574468085106383, 0.09574468085106383, 0.09574468085106383, 0.09219858156028368, 0.09219858156028368, 0.09219858156028368, 0.3120567375886525, 0.12056737588652482, 0.09574468085106383, 0.0975177304964539, 0.09574468085106383, 0.09397163120567376, 0.09397163120567376, 0.09397163120567376, 0.09397163120567376, 0.09219858156028368, 0.09397163120567376, 0.09574468085106383, 0.09219858156028368, 0.09042553191489362, 0.09397163120567376, 0.09574468085106383, 0.0975177304964539, 0.10106382978723404, 0.19326241134751773, 0.3776595744680851, 0.3723404255319149, 0.3617021276595745, 0.3528368794326241, 0.12411347517730496, 0.10283687943262411, 0.09397163120567376, 0.09219858156028368, 0.09219858156028368, 0.09219858156028368, 0.09397163120567376, 0.09397163120567376, 0.09397163120567376, 0.0975177304964539, 0.09929078014184398, 0.7854609929078015, 0.1099290780141844, 0.0975177304964539, 0.09574468085106383, 0.0975177304964539, 0.09574468085106383, 0.09574468085106383, 0.0975177304964539, 0.09929078014184398, 0.19148936170212766, 0.19858156028368795, 0.18262411347517732, 0.24113475177304963, 0.24822695035460993, 0.26063829787234044, 0.26595744680851063, 0.3971631205673759, 0.35106382978723405, 0.8475177304964538, 0.9290780141843972, 0.9485815602836879, 0.9202127659574468, 0.8014184397163121, 0.25, 0.13829787234042554, 0.09574468085106383, 0.09574468085106383, 0.09574468085106383, 0.09574468085106383, 0.09574468085106383, 0.09574468085106383, 0.10106382978723404, 0.22163120567375885, 0.8386524822695035, 0.8705673758865248, 0.6578014184397163, 0.1400709219858156, 0.09929078014184398, 0.0975177304964539, 0.0975177304964539, 0.0975177304964539, 0.0975177304964539, 0.09929078014184398, 0.09574468085106383, 0.09574468085106383, 0.10106382978723404, 0.09574468085106383, 0.10460992907801418, 0.12234042553191489, 0.11524822695035461, 0.9202127659574468, 0.10460992907801418, 0.0975177304964539, 0.0975177304964539, 0.0975177304964539, 0.10106382978723404, 0.09929078014184398, 0.10106382978723404, 0.10106382978723404, 0.09929078014184398, 0.10106382978723404, 0.12943262411347517, 0.12943262411347517, 0.10638297872340426, 0.10815602836879433, 0.10815602836879433, 0.10638297872340426, 0.10460992907801418, 0.10638297872340426, 0.1099290780141844, 0.10815602836879433, 0.10815602836879433, 0.1099290780141844, 0.1099290780141844, 0.1099290780141844, 0.12056737588652482, 0.12234042553191489, 0.11879432624113476, 0.11524822695035461, 0.11347517730496454, 0.11524822695035461, 0.11524822695035461, 0.11524822695035461, 0.11347517730496454, 0.11347517730496454, 0.11347517730496454, 0.11879432624113476, 0.11879432624113476, 0.11524822695035461, 0.11702127659574468, 0.11702127659574468, 0.11702127659574468, 0.11702127659574468, 0.11702127659574468, 0.12056737588652482, 0.12056737588652482, 0.12588652482269502, 0.12588652482269502, 0.12588652482269502, 0.13297872340425532, 0.1347517730496454, 0.1524822695035461, 0.15780141843971632, 0.16134751773049646, 0.18085106382978725, 0.2198581560283688, 0.34574468085106386], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/UPF0172.gap.json b/pfam_gap_rates/UPF0172.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c5b822176f3beabdb92cffd92bc9109c558609b5
--- /dev/null
+++ b/pfam_gap_rates/UPF0172.gap.json
@@ -0,0 +1 @@
+{"family": "UPF0172", "n_seqs": 240, "length": 226, "gap_rates": [0.8791666666666667, 0.3625, 0.2625, 0.19166666666666668, 0.18333333333333332, 0.1625, 0.15833333333333333, 0.15, 0.14583333333333334, 0.14583333333333334, 0.14583333333333334, 0.13333333333333333, 0.13333333333333333, 0.13333333333333333, 0.13333333333333333, 0.13333333333333333, 0.13333333333333333, 0.13333333333333333, 0.13333333333333333, 0.1375, 0.13333333333333333, 0.13333333333333333, 0.13333333333333333, 0.13333333333333333, 0.13333333333333333, 0.13333333333333333, 0.13333333333333333, 0.13333333333333333, 0.13333333333333333, 0.13333333333333333, 0.13333333333333333, 0.13333333333333333, 0.14166666666666666, 0.14166666666666666, 0.1375, 0.14166666666666666, 0.4041666666666667, 0.5166666666666667, 0.7083333333333334, 0.85, 0.9083333333333333, 0.9333333333333333, 0.95, 0.95, 0.9208333333333333, 0.8791666666666667, 0.7666666666666667, 0.6708333333333333, 0.1625, 0.125, 0.12083333333333333, 0.12083333333333333, 0.12083333333333333, 0.12083333333333333, 0.12083333333333333, 0.125, 0.125, 0.125, 0.125, 0.9375, 0.9375, 0.22083333333333333, 0.11666666666666667, 0.11666666666666667, 0.1125, 0.1125, 0.1125, 0.12083333333333333, 0.10416666666666667, 0.10416666666666667, 0.1, 0.1, 0.1, 0.09583333333333334, 0.0875, 0.07916666666666666, 0.075, 0.07083333333333333, 0.0875, 0.09166666666666666, 0.09166666666666666, 0.1, 0.1, 0.9333333333333333, 0.14583333333333334, 0.11666666666666667, 0.11666666666666667, 0.11666666666666667, 0.09166666666666666, 0.09166666666666666, 0.09583333333333334, 0.1, 0.1, 0.1, 0.10416666666666667, 0.10833333333333334, 0.10833333333333334, 0.10833333333333334, 0.10416666666666667, 0.10833333333333334, 0.925, 0.10833333333333334, 0.10833333333333334, 0.1125, 0.10833333333333334, 0.10416666666666667, 0.10416666666666667, 0.1125, 0.10416666666666667, 0.10416666666666667, 0.09583333333333334, 0.1, 0.1, 0.10416666666666667, 0.10416666666666667, 0.10833333333333334, 0.10833333333333334, 0.1125, 0.12916666666666668, 0.12916666666666668, 0.12083333333333333, 0.9041666666666667, 0.1125, 0.10833333333333334, 0.10833333333333334, 0.10833333333333334, 0.10833333333333334, 0.10416666666666667, 0.125, 0.125, 0.12083333333333333, 0.15833333333333333, 0.14583333333333334, 0.12916666666666668, 0.20833333333333334, 0.26666666666666666, 0.8, 0.9333333333333333, 0.8333333333333334, 0.7958333333333333, 0.24583333333333332, 0.24166666666666667, 0.20416666666666666, 0.22083333333333333, 0.4166666666666667, 0.9083333333333333, 0.9333333333333333, 0.95, 0.9458333333333333, 0.9208333333333333, 0.9, 0.175, 0.15, 0.3375, 0.15, 0.14166666666666666, 0.13333333333333333, 0.125, 0.12916666666666668, 0.12916666666666668, 0.1375, 0.6625, 0.9291666666666667, 0.8916666666666667, 0.15833333333333333, 0.15, 0.1375, 0.13333333333333333, 0.15416666666666667, 0.24583333333333332, 0.24583333333333332, 0.24583333333333332, 0.24166666666666667, 0.225, 0.20416666666666666, 0.19166666666666668, 0.2833333333333333, 0.29583333333333334, 0.3958333333333333, 0.36666666666666664, 0.24166666666666667, 0.7625, 0.8458333333333333, 0.8958333333333334, 0.9291666666666667, 0.9125, 0.875, 0.8333333333333334, 0.7541666666666667, 0.14583333333333334, 0.14583333333333334, 0.15, 0.14583333333333334, 0.14166666666666666, 0.14166666666666666, 0.14166666666666666, 0.14166666666666666, 0.14166666666666666, 0.14583333333333334, 0.14166666666666666, 0.15, 0.15833333333333333, 0.15833333333333333, 0.15, 0.14583333333333334, 0.14583333333333334, 0.14583333333333334, 0.14583333333333334, 0.14583333333333334, 0.14583333333333334, 0.14583333333333334, 0.14583333333333334, 0.14583333333333334, 0.15, 0.15, 0.15, 0.15, 0.15, 0.15833333333333333, 0.17083333333333334, 0.17083333333333334, 0.175, 0.175, 0.2375, 0.4166666666666667, 0.5708333333333333], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/UPF1_Zn_bind.gap.json b/pfam_gap_rates/UPF1_Zn_bind.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..1fde804b8491ef461bf6fa4dec4b1e00374fdb64
--- /dev/null
+++ b/pfam_gap_rates/UPF1_Zn_bind.gap.json
@@ -0,0 +1 @@
+{"family": "UPF1_Zn_bind", "n_seqs": 335, "length": 155, "gap_rates": [0.3641791044776119, 0.16417910447761194, 0.14626865671641792, 0.11940298507462686, 0.11940298507462686, 0.11641791044776119, 0.12238805970149254, 0.12835820895522387, 0.14626865671641792, 0.13432835820895522, 0.11641791044776119, 0.11641791044776119, 0.11343283582089553, 0.11343283582089553, 0.1044776119402985, 0.1044776119402985, 0.1044776119402985, 0.1044776119402985, 0.11940298507462686, 0.8835820895522388, 0.8835820895522388, 0.10149253731343283, 0.10149253731343283, 0.10149253731343283, 0.10149253731343283, 0.10149253731343283, 0.09253731343283582, 0.09253731343283582, 0.09253731343283582, 0.09850746268656717, 0.1044776119402985, 0.08955223880597014, 0.08955223880597014, 0.9402985074626866, 0.08656716417910448, 0.08955223880597014, 0.09850746268656717, 0.0955223880597015, 0.09253731343283582, 0.08955223880597014, 0.08656716417910448, 0.08656716417910448, 0.08656716417910448, 0.08955223880597014, 0.08955223880597014, 0.09253731343283582, 0.09253731343283582, 0.09253731343283582, 0.09253731343283582, 0.08656716417910448, 0.09253731343283582, 0.08955223880597014, 0.0955223880597015, 0.11940298507462686, 0.12835820895522387, 0.1253731343283582, 0.12238805970149254, 0.1253731343283582, 0.11343283582089553, 0.09850746268656717, 0.08358208955223881, 0.08059701492537313, 0.08358208955223881, 0.08059701492537313, 0.08059701492537313, 0.08059701492537313, 0.08358208955223881, 0.08059701492537313, 0.08059701492537313, 0.08059701492537313, 0.08059701492537313, 0.08059701492537313, 0.08059701492537313, 0.08059701492537313, 0.08059701492537313, 0.08059701492537313, 0.08059701492537313, 0.08358208955223881, 0.08955223880597014, 0.09253731343283582, 0.08656716417910448, 0.09850746268656717, 0.14626865671641792, 0.1373134328358209, 0.10746268656716418, 0.1044776119402985, 0.1044776119402985, 0.1044776119402985, 0.10746268656716418, 0.10149253731343283, 0.10149253731343283, 0.0955223880597015, 0.08955223880597014, 0.09253731343283582, 0.14328358208955225, 0.10149253731343283, 0.10149253731343283, 0.10149253731343283, 0.11044776119402985, 0.11044776119402985, 0.2626865671641791, 0.2417910447761194, 0.18507462686567164, 0.13432835820895522, 0.11940298507462686, 0.11641791044776119, 0.11044776119402985, 0.11343283582089553, 0.11641791044776119, 0.11641791044776119, 0.1044776119402985, 0.1044776119402985, 0.1044776119402985, 0.1044776119402985, 0.1044776119402985, 0.10746268656716418, 0.10746268656716418, 0.10746268656716418, 0.11343283582089553, 0.11044776119402985, 0.11044776119402985, 0.11044776119402985, 0.11044776119402985, 0.11044776119402985, 0.11343283582089553, 0.11343283582089553, 0.11343283582089553, 0.12835820895522387, 0.13134328358208955, 0.13134328358208955, 0.1253731343283582, 0.1253731343283582, 0.12238805970149254, 0.12835820895522387, 0.14626865671641792, 0.14626865671641792, 0.15223880597014924, 0.15223880597014924, 0.1373134328358209, 0.13432835820895522, 0.13432835820895522, 0.13432835820895522, 0.1373134328358209, 0.14029850746268657, 0.14029850746268657, 0.14925373134328357, 0.1582089552238806, 0.16119402985074627, 0.16119402985074627, 0.16119402985074627, 0.16119402985074627, 0.16417910447761194, 0.17313432835820897, 0.21791044776119403, 0.41194029850746267], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/UPRTase.gap.json b/pfam_gap_rates/UPRTase.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..9f18228f4d8e42ce6b488363d13760a19f21348d
--- /dev/null
+++ b/pfam_gap_rates/UPRTase.gap.json
@@ -0,0 +1 @@
+{"family": "UPRTase", "n_seqs": 2505, "length": 211, "gap_rates": [0.6347305389221557, 0.3964071856287425, 0.18083832335329342, 0.13692614770459083, 0.1157684630738523, 0.10019960079840319, 0.0906187624750499, 0.08343313373253493, 0.08023952095808383, 0.07584830339321358, 0.0718562874251497, 0.07025948103792415, 0.0686626746506986, 0.06347305389221557, 0.06347305389221557, 0.0626746506986028, 0.06147704590818363, 0.059880239520958084, 0.05908183632734531, 0.058682634730538925, 0.058682634730538925, 0.058682634730538925, 0.058682634730538925, 0.058682634730538925, 0.056686626746506985, 0.056686626746506985, 0.056686626746506985, 0.056686626746506985, 0.055489021956087826, 0.055489021956087826, 0.05469061876247505, 0.05229540918163673, 0.05189620758483034, 0.05069860279441118, 0.05029940119760479, 0.05029940119760479, 0.05029940119760479, 0.0499001996007984, 0.04950099800399202, 0.0499001996007984, 0.0499001996007984, 0.08902195608782436, 0.8582834331337326, 0.05189620758483034, 0.05069860279441118, 0.05069860279441118, 0.05109780439121756, 0.05109780439121756, 0.05029940119760479, 0.04910179640718563, 0.04910179640718563, 0.04950099800399202, 0.04950099800399202, 0.04950099800399202, 0.048303393213572854, 0.04750499001996008, 0.05069860279441118, 0.05029940119760479, 0.05109780439121756, 0.057085828343313376, 0.056686626746506985, 0.0530938123752495, 0.06706586826347305, 0.06107784431137724, 0.0499001996007984, 0.1568862275449102, 0.7624750499001997, 0.08343313373253493, 0.043512974051896205, 0.04231536926147705, 0.04231536926147705, 0.04231536926147705, 0.04271457085828343, 0.04311377245508982, 0.04311377245508982, 0.041916167664670656, 0.041916167664670656, 0.04031936127744511, 0.04031936127744511, 0.03992015968063872, 0.03792415169660679, 0.03832335329341317, 0.038722554890219564, 0.03832335329341317, 0.03792415169660679, 0.036726546906187624, 0.036726546906187624, 0.03632734530938124, 0.03592814371257485, 0.035129740518962074, 0.03592814371257485, 0.035528942115768465, 0.03592814371257485, 0.03592814371257485, 0.03592814371257485, 0.036726546906187624, 0.03632734530938124, 0.04311377245508982, 0.04431137724550898, 0.043912175648702596, 0.038722554890219564, 0.03792415169660679, 0.037125748502994015, 0.06027944111776447, 0.05069860279441118, 0.9481037924151696, 0.05469061876247505, 0.055489021956087826, 0.09900199600798404, 0.055489021956087826, 0.05269461077844311, 0.05109780439121756, 0.05029940119760479, 0.04910179640718563, 0.047105788423153695, 0.046706586826347304, 0.04151696606786427, 0.04231536926147705, 0.07265469061876248, 0.045508982035928146, 0.8650698602794411, 0.03832335329341317, 0.04311377245508982, 0.03952095808383234, 0.037125748502994015, 0.0375249500998004, 0.037125748502994015, 0.0375249500998004, 0.036726546906187624, 0.037125748502994015, 0.036726546906187624, 0.0343313373253493, 0.033532934131736525, 0.035528942115768465, 0.035129740518962074, 0.035528942115768465, 0.03792415169660679, 0.03792415169660679, 0.03792415169660679, 0.0375249500998004, 0.037125748502994015, 0.0375249500998004, 0.037125748502994015, 0.0375249500998004, 0.037125748502994015, 0.0375249500998004, 0.03592814371257485, 0.03592814371257485, 0.15888223552894212, 0.16167664670658682, 0.09261477045908184, 0.4311377245508982, 0.42714570858283435, 0.04910179640718563, 0.03832335329341317, 0.036726546906187624, 0.03592814371257485, 0.037125748502994015, 0.036726546906187624, 0.037125748502994015, 0.037125748502994015, 0.0375249500998004, 0.037125748502994015, 0.03832335329341317, 0.03832335329341317, 0.03792415169660679, 0.03832335329341317, 0.038722554890219564, 0.03912175648702595, 0.03952095808383234, 0.03952095808383234, 0.03952095808383234, 0.04151696606786427, 0.03952095808383234, 0.04031936127744511, 0.04031936127744511, 0.9353293413173652, 0.8822355289421158, 0.0407185628742515, 0.0407185628742515, 0.03992015968063872, 0.04111776447105788, 0.041916167664670656, 0.04231536926147705, 0.04271457085828343, 0.053493013972055886, 0.05588822355289421, 0.07984031936127745, 0.09261477045908184, 0.09181636726546906, 0.09740518962075849, 0.10059880239520957, 0.10578842315369262, 0.1157684630738523, 0.11936127744510978, 0.12095808383233533, 0.12215568862275449, 0.12375249500998003, 0.1253493013972056, 0.1253493013972056, 0.12654690618762476, 0.1277445109780439, 0.12894211576846307, 0.13053892215568863, 0.13213572854291417, 0.13373253493013973, 0.1341317365269461, 0.13892215568862276, 0.1497005988023952, 0.20039920159680638, 0.3317365269461078], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/UbiA.gap.json b/pfam_gap_rates/UbiA.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..bd2ced98d256ce5395dbb3eb4ebf0eb12fd00733
--- /dev/null
+++ b/pfam_gap_rates/UbiA.gap.json
@@ -0,0 +1 @@
+{"family": "UbiA", "n_seqs": 5000, "length": 295, "gap_rates": [0.8452, 0.516, 0.4038, 0.3432, 0.2918, 0.2554, 0.2368, 0.2272, 0.8568, 0.7528, 0.1982, 0.1856, 0.177, 0.1696, 0.2474, 0.1592, 0.1432, 0.1394, 0.1278, 0.1164, 0.1, 0.8398, 0.9154, 0.9342, 0.8746, 0.822, 0.1102, 0.08, 0.066, 0.0578, 0.0554, 0.0528, 0.0532, 0.0524, 0.0536, 0.0534, 0.0488, 0.9354, 0.9426, 0.9256, 0.0472, 0.0446, 0.0446, 0.0442, 0.0448, 0.0444, 0.044, 0.043, 0.0422, 0.0422, 0.0414, 0.0406, 0.0396, 0.0392, 0.038, 0.0384, 0.0372, 0.0368, 0.0366, 0.0368, 0.2142, 0.2092, 0.9326, 0.9456, 0.9022, 0.0374, 0.0652, 0.89, 0.0514, 0.0492, 0.0456, 0.0848, 0.0396, 0.0384, 0.0386, 0.0384, 0.0368, 0.037, 0.0362, 0.0436, 0.0362, 0.033, 0.032, 0.0304, 0.0306, 0.0298, 0.0292, 0.0286, 0.0274, 0.0274, 0.0272, 0.0268, 0.027, 0.0278, 0.0288, 0.0294, 0.0304, 0.0292, 0.7818, 0.896, 0.9284, 0.7914, 0.768, 0.4898, 0.0378, 0.0328, 0.0308, 0.031, 0.0304, 0.031, 0.0298, 0.0312, 0.0294, 0.0282, 0.0296, 0.0292, 0.0278, 0.0312, 0.031, 0.0324, 0.0302, 0.0288, 0.7034, 0.0268, 0.0258, 0.0254, 0.025, 0.7002, 0.6412, 0.6978, 0.3888, 0.0248, 0.0238, 0.0234, 0.0232, 0.0226, 0.0228, 0.0228, 0.2364, 0.0268, 0.0258, 0.0236, 0.0242, 0.0236, 0.023, 0.024, 0.0258, 0.025, 0.0256, 0.0242, 0.0244, 0.024, 0.0238, 0.0264, 0.0246, 0.0254, 0.0252, 0.0264, 0.8, 0.0294, 0.0426, 0.0424, 0.0554, 0.0716, 0.7906, 0.8256, 0.8684, 0.926, 0.9422, 0.947, 0.9376, 0.8968, 0.8558, 0.8134, 0.7158, 0.0454, 0.0372, 0.0306, 0.0278, 0.0268, 0.0256, 0.0252, 0.0258, 0.0256, 0.0286, 0.106, 0.0366, 0.0278, 0.0262, 0.0274, 0.0272, 0.03, 0.0328, 0.036, 0.0388, 0.042, 0.1064, 0.9448, 0.0986, 0.0936, 0.0914, 0.079, 0.0484, 0.0476, 0.0478, 0.0468, 0.0502, 0.0496, 0.0488, 0.0492, 0.0508, 0.0502, 0.0484, 0.0498, 0.0522, 0.0528, 0.052, 0.0522, 0.941, 0.0596, 0.0592, 0.0584, 0.0578, 0.0566, 0.0562, 0.06, 0.276, 0.8078, 0.8998, 0.6942, 0.2194, 0.1308, 0.1332, 0.101, 0.0756, 0.0636, 0.0656, 0.076, 0.092, 0.1308, 0.142, 0.7878, 0.9046, 0.687, 0.3458, 0.2578, 0.1496, 0.0744, 0.0684, 0.0654, 0.0664, 0.0672, 0.0678, 0.0682, 0.0698, 0.0704, 0.0718, 0.073, 0.0728, 0.0742, 0.0748, 0.076, 0.0778, 0.0812, 0.0848, 0.0888, 0.0964, 0.1028, 0.1144, 0.1296, 0.144, 0.206, 0.2024, 0.2104, 0.2194, 0.2396, 0.2578, 0.2788, 0.3022, 0.3296, 0.3568, 0.3832, 0.4078, 0.4392, 0.4652, 0.484, 0.5024, 0.5208, 0.9454, 0.8996, 0.7528, 0.7288, 0.7734, 0.8174, 0.8934], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Ubiq_cyt_C_chap.gap.json b/pfam_gap_rates/Ubiq_cyt_C_chap.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..13adec43e1a1f1d06b5e3393a7f8ac30528263bb
--- /dev/null
+++ b/pfam_gap_rates/Ubiq_cyt_C_chap.gap.json
@@ -0,0 +1 @@
+{"family": "Ubiq_cyt_C_chap", "n_seqs": 458, "length": 187, "gap_rates": [0.8427947598253275, 0.3296943231441048, 0.21179039301310043, 0.14847161572052403, 0.12663755458515283, 0.12445414847161572, 0.11790393013100436, 0.11572052401746726, 0.1091703056768559, 0.1091703056768559, 0.1091703056768559, 0.10262008733624454, 0.0982532751091703, 0.0982532751091703, 0.09606986899563319, 0.09388646288209607, 0.08951965065502183, 0.08951965065502183, 0.08951965065502183, 0.0851528384279476, 0.0851528384279476, 0.07860262008733625, 0.07860262008733625, 0.07860262008733625, 0.07860262008733625, 0.07860262008733625, 0.07423580786026202, 0.07423580786026202, 0.07423580786026202, 0.07205240174672489, 0.07641921397379912, 0.8733624454148472, 0.9388646288209607, 0.62882096069869, 0.1812227074235808, 0.10262008733624454, 0.07641921397379912, 0.9388646288209607, 0.07205240174672489, 0.07205240174672489, 0.07205240174672489, 0.06986899563318777, 0.07205240174672489, 0.06986899563318777, 0.06986899563318777, 0.06986899563318777, 0.06986899563318777, 0.06986899563318777, 0.06986899563318777, 0.06986899563318777, 0.06986899563318777, 0.06986899563318777, 0.06768558951965066, 0.06768558951965066, 0.06768558951965066, 0.06768558951965066, 0.06768558951965066, 0.07205240174672489, 0.07205240174672489, 0.10043668122270742, 0.0982532751091703, 0.0982532751091703, 0.17903930131004367, 0.0851528384279476, 0.07205240174672489, 0.07423580786026202, 0.08951965065502183, 0.7270742358078602, 0.9301310043668122, 0.6179039301310044, 0.07423580786026202, 0.07860262008733625, 0.07641921397379912, 0.07423580786026202, 0.07205240174672489, 0.07205240174672489, 0.06768558951965066, 0.06986899563318777, 0.06986899563318777, 0.06768558951965066, 0.06768558951965066, 0.06986899563318777, 0.06986899563318777, 0.06768558951965066, 0.06768558951965066, 0.06768558951965066, 0.06768558951965066, 0.06986899563318777, 0.07205240174672489, 0.06986899563318777, 0.07205240174672489, 0.06986899563318777, 0.06986899563318777, 0.11572052401746726, 0.8165938864628821, 0.9039301310043668, 0.6419213973799127, 0.10480349344978165, 0.09606986899563319, 0.07641921397379912, 0.07641921397379912, 0.07860262008733625, 0.07860262008733625, 0.07860262008733625, 0.07860262008733625, 0.08078602620087336, 0.08296943231441048, 0.08296943231441048, 0.08733624454148471, 0.08733624454148471, 0.08733624454148471, 0.08733624454148471, 0.08951965065502183, 0.09388646288209607, 0.8056768558951966, 0.8165938864628821, 0.8602620087336245, 0.888646288209607, 0.8908296943231441, 0.8930131004366813, 0.9213973799126638, 0.9301310043668122, 0.9323144104803494, 0.9366812227074236, 0.9388646288209607, 0.9410480349344978, 0.9410480349344978, 0.9432314410480349, 0.9432314410480349, 0.9475982532751092, 0.9475982532751092, 0.9497816593886463, 0.9475982532751092, 0.9475982532751092, 0.9454148471615721, 0.9432314410480349, 0.9432314410480349, 0.9410480349344978, 0.9410480349344978, 0.9366812227074236, 0.9323144104803494, 0.9323144104803494, 0.9279475982532751, 0.9192139737991266, 0.8908296943231441, 0.8908296943231441, 0.8799126637554585, 0.8231441048034934, 0.8144104803493449, 0.7816593886462883, 0.5021834061135371, 0.25109170305676853, 0.1812227074235808, 0.13100436681222707, 0.11353711790393013, 0.10262008733624454, 0.10480349344978165, 0.10480349344978165, 0.10698689956331878, 0.10698689956331878, 0.1091703056768559, 0.11135371179039301, 0.11135371179039301, 0.11135371179039301, 0.11353711790393013, 0.11353711790393013, 0.11353711790393013, 0.11790393013100436, 0.12663755458515283, 0.13755458515283842, 0.15065502183406113, 0.15283842794759825, 0.1572052401746725, 0.16812227074235808, 0.17248908296943233, 0.17903930131004367, 0.1812227074235808, 0.1965065502183406, 0.20087336244541484, 0.2074235807860262, 0.23580786026200873, 0.31222707423580787, 0.36681222707423583, 0.4126637554585153, 0.5524017467248908, 0.7030567685589519, 0.7707423580786026], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Ubiquitin_3.gap.json b/pfam_gap_rates/Ubiquitin_3.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..cff49a3941cebb2cfc343fd5bddcfbeeb088f015
--- /dev/null
+++ b/pfam_gap_rates/Ubiquitin_3.gap.json
@@ -0,0 +1 @@
+{"family": "Ubiquitin_3", "n_seqs": 103, "length": 90, "gap_rates": [0.9320388349514563, 0.44660194174757284, 0.4174757281553398, 0.4077669902912621, 0.4077669902912621, 0.4077669902912621, 0.39805825242718446, 0.39805825242718446, 0.34951456310679613, 0.883495145631068, 0.8640776699029126, 0.32038834951456313, 0.30097087378640774, 0.30097087378640774, 0.30097087378640774, 0.2912621359223301, 0.27184466019417475, 0.2621359223300971, 0.038834951456310676, 0.019417475728155338, 0.019417475728155338, 0.019417475728155338, 0.019417475728155338, 0.019417475728155338, 0.019417475728155338, 0.019417475728155338, 0.009708737864077669, 0.009708737864077669, 0.009708737864077669, 0.009708737864077669, 0.009708737864077669, 0.009708737864077669, 0.009708737864077669, 0.009708737864077669, 0.009708737864077669, 0.0, 0.0, 0.0, 0.0, 0.36893203883495146, 0.1262135922330097, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.009708737864077669, 0.0, 0.0, 0.009708737864077669, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.009708737864077669, 0.0, 0.0, 0.019417475728155338, 0.009708737864077669, 0.009708737864077669, 0.0, 0.0, 0.0, 0.009708737864077669, 0.009708737864077669, 0.0, 0.0, 0.009708737864077669, 0.009708737864077669, 0.009708737864077669, 0.009708737864077669, 0.038834951456310676, 0.04854368932038835, 0.04854368932038835, 0.04854368932038835, 0.04854368932038835, 0.04854368932038835, 0.04854368932038835, 0.06796116504854369, 0.06796116504854369, 0.06796116504854369, 0.06796116504854369, 0.07766990291262135, 0.08737864077669903, 0.47572815533980584], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/UreF.gap.json b/pfam_gap_rates/UreF.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..4553a811d62477bc3e27bbb120fb20b8d5f4babc
--- /dev/null
+++ b/pfam_gap_rates/UreF.gap.json
@@ -0,0 +1 @@
+{"family": "UreF", "n_seqs": 689, "length": 185, "gap_rates": [0.420899854862119, 0.3309143686502177, 0.26850507982583455, 0.19593613933236576, 0.1378809869375907, 0.10740203193033382, 0.09143686502177069, 0.0841799709724238, 0.07256894049346879, 0.06386066763425254, 0.06386066763425254, 0.062409288824383166, 0.06095791001451379, 0.05805515239477504, 0.3613933236574746, 0.06095791001451379, 0.05370101596516691, 0.047895500725689405, 0.04644412191582003, 0.03918722786647315, 0.040638606676342524, 0.036284470246734396, 0.036284470246734396, 0.03483309143686502, 0.02902757619738752, 0.030478955007256895, 0.030478955007256895, 0.030478955007256895, 0.030478955007256895, 0.03193033381712627, 0.03193033381712627, 0.11320754716981132, 0.11320754716981132, 0.11901306240928883, 0.9143686502177069, 0.9230769230769231, 0.9361393323657474, 0.9433962264150944, 0.9259796806966618, 0.9201741654571843, 0.9085631349782293, 0.3018867924528302, 0.33381712626995647, 0.2467343976777939, 0.204644412191582, 0.18142235123367198, 0.09288824383164006, 0.9477503628447025, 0.9492017416545718, 0.9404934687953556, 0.03483309143686502, 0.026124818577648767, 0.02177068214804064, 0.018867924528301886, 0.018867924528301886, 0.018867924528301886, 0.018867924528301886, 0.018867924528301886, 0.018867924528301886, 0.018867924528301886, 0.020319303338171262, 0.018867924528301886, 0.01741654571843251, 0.015965166908563134, 0.01451378809869376, 0.01451378809869376, 0.01451378809869376, 0.01451378809869376, 0.01451378809869376, 0.01451378809869376, 0.015965166908563134, 0.015965166908563134, 0.015965166908563134, 0.015965166908563134, 0.015965166908563134, 0.015965166908563134, 0.015965166908563134, 0.01451378809869376, 0.01451378809869376, 0.01451378809869376, 0.01451378809869376, 0.013062409288824383, 0.013062409288824383, 0.013062409288824383, 0.01451378809869376, 0.013062409288824383, 0.036284470246734396, 0.03918722786647315, 0.07547169811320754, 0.14368650217706821, 0.262699564586357, 0.4426705370101596, 0.6458635703918723, 0.7532656023222061, 0.8214804063860668, 0.8563134978229318, 0.8664731494920174, 0.8780841799709724, 0.8911465892597968, 0.9042089985486212, 0.9201741654571843, 0.9375907111756169, 0.9477503628447025, 0.9346879535558781, 0.9129172714078374, 0.8984034833091437, 0.8853410740203193, 0.8693759071117562, 0.8635703918722787, 0.8447024673439768, 0.7939042089985486, 0.7111756168359942, 0.555878084179971, 0.3309143686502177, 0.216255442670537, 0.11320754716981132, 0.04934687953555878, 0.036284470246734396, 0.03483309143686502, 0.01451378809869376, 0.09579100145137881, 0.28592162554426703, 0.5065312046444121, 0.7169811320754716, 0.8998548621190131, 0.8055152394775036, 0.5950653120464441, 0.38316400580551524, 0.16545718432510886, 0.0783744557329463, 0.05224963715529753, 0.01451378809869376, 0.013062409288824383, 0.013062409288824383, 0.011611030478955007, 0.011611030478955007, 0.011611030478955007, 0.011611030478955007, 0.010159651669085631, 0.011611030478955007, 0.013062409288824383, 0.015965166908563134, 0.01451378809869376, 0.015965166908563134, 0.015965166908563134, 0.011611030478955007, 0.011611030478955007, 0.01451378809869376, 0.013062409288824383, 0.01451378809869376, 0.013062409288824383, 0.01451378809869376, 0.015965166908563134, 0.01451378809869376, 0.01451378809869376, 0.01451378809869376, 0.01451378809869376, 0.01451378809869376, 0.01451378809869376, 0.01451378809869376, 0.01451378809869376, 0.01451378809869376, 0.01451378809869376, 0.01451378809869376, 0.01451378809869376, 0.01451378809869376, 0.015965166908563134, 0.015965166908563134, 0.01741654571843251, 0.020319303338171262, 0.02177068214804064, 0.02177068214804064, 0.02177068214804064, 0.023222060957910014, 0.023222060957910014, 0.023222060957910014, 0.027576197387518143, 0.036284470246734396, 0.03773584905660377, 0.03918722786647315, 0.04354136429608128, 0.055152394775036286, 0.15239477503628446, 0.35123367198838895, 0.8055152394775036], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Uso1_p115_head.gap.json b/pfam_gap_rates/Uso1_p115_head.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..4927ee65d3e119db970c51a3709804b5e2be8c2f
--- /dev/null
+++ b/pfam_gap_rates/Uso1_p115_head.gap.json
@@ -0,0 +1 @@
+{"family": "Uso1_p115_head", "n_seqs": 284, "length": 431, "gap_rates": [0.6267605633802817, 0.602112676056338, 0.5140845070422535, 0.44014084507042256, 0.4295774647887324, 0.4295774647887324, 0.4295774647887324, 0.426056338028169, 0.426056338028169, 0.426056338028169, 0.426056338028169, 0.426056338028169, 0.4225352112676056, 0.9014084507042254, 0.926056338028169, 0.9401408450704225, 0.9014084507042254, 0.9014084507042254, 0.5563380281690141, 0.8802816901408451, 0.7605633802816901, 0.5316901408450704, 0.45422535211267606, 0.43309859154929575, 0.6690140845070423, 0.6549295774647887, 0.6584507042253521, 0.6584507042253521, 0.6408450704225352, 0.6267605633802817, 0.5985915492957746, 0.5845070422535211, 0.5176056338028169, 0.5105633802816901, 0.3873239436619718, 0.7147887323943662, 0.7992957746478874, 0.9084507042253521, 0.9436619718309859, 0.852112676056338, 0.7535211267605634, 0.6830985915492958, 0.2535211267605634, 0.24295774647887325, 0.22183098591549297, 0.22183098591549297, 0.21830985915492956, 0.21830985915492956, 0.21830985915492956, 0.21830985915492956, 0.2147887323943662, 0.3204225352112676, 0.43309859154929575, 0.43309859154929575, 0.9119718309859155, 0.926056338028169, 0.9330985915492958, 0.9436619718309859, 0.9436619718309859, 0.9401408450704225, 0.9295774647887324, 0.9119718309859155, 0.9084507042253521, 0.2711267605633803, 0.2605633802816901, 0.2147887323943662, 0.20422535211267606, 0.22535211267605634, 0.22183098591549297, 0.25, 0.2147887323943662, 0.25704225352112675, 0.22887323943661972, 0.22183098591549297, 0.16901408450704225, 0.16901408450704225, 0.16901408450704225, 0.16901408450704225, 0.17253521126760563, 0.16901408450704225, 0.16901408450704225, 0.16901408450704225, 0.16901408450704225, 0.16901408450704225, 0.16901408450704225, 0.176056338028169, 0.17253521126760563, 0.20422535211267606, 0.16901408450704225, 0.16901408450704225, 0.16901408450704225, 0.16549295774647887, 0.16549295774647887, 0.16549295774647887, 0.16901408450704225, 0.16549295774647887, 0.16549295774647887, 0.16549295774647887, 0.17253521126760563, 0.17253521126760563, 0.16901408450704225, 0.16901408450704225, 0.16901408450704225, 0.16901408450704225, 0.17253521126760563, 0.17253521126760563, 0.17253521126760563, 0.176056338028169, 0.1795774647887324, 0.7429577464788732, 0.7676056338028169, 0.8415492957746479, 0.9119718309859155, 0.9330985915492958, 0.9330985915492958, 0.9330985915492958, 0.9436619718309859, 0.9471830985915493, 0.9471830985915493, 0.9471830985915493, 0.9471830985915493, 0.9471830985915493, 0.9471830985915493, 0.9471830985915493, 0.9436619718309859, 0.9330985915492958, 0.9330985915492958, 0.9190140845070423, 0.9084507042253521, 0.7992957746478874, 0.7535211267605634, 0.7288732394366197, 0.7007042253521126, 0.6267605633802817, 0.5563380281690141, 0.4154929577464789, 0.2112676056338028, 0.17253521126760563, 0.16549295774647887, 0.15845070422535212, 0.15845070422535212, 0.15845070422535212, 0.1619718309859155, 0.1619718309859155, 0.15845070422535212, 0.4507042253521127, 0.44014084507042256, 0.4119718309859155, 0.4119718309859155, 0.4154929577464789, 0.8697183098591549, 0.9436619718309859, 0.9190140845070423, 0.6830985915492958, 0.25, 0.18661971830985916, 0.1619718309859155, 0.15492957746478872, 0.16901408450704225, 0.16901408450704225, 0.15492957746478872, 0.15845070422535212, 0.1619718309859155, 0.14788732394366197, 0.13380281690140844, 0.13380281690140844, 0.13380281690140844, 0.13380281690140844, 0.13380281690140844, 0.13380281690140844, 0.13028169014084506, 0.13028169014084506, 0.13028169014084506, 0.13028169014084506, 0.13380281690140844, 0.13732394366197184, 0.13732394366197184, 0.1267605633802817, 0.1267605633802817, 0.1267605633802817, 0.1267605633802817, 0.1267605633802817, 0.1267605633802817, 0.1267605633802817, 0.12323943661971831, 0.12323943661971831, 0.1267605633802817, 0.1267605633802817, 0.15492957746478872, 0.40492957746478875, 0.8697183098591549, 0.8873239436619719, 0.897887323943662, 0.9154929577464789, 0.9295774647887324, 0.9471830985915493, 0.9330985915492958, 0.926056338028169, 0.9014084507042254, 0.8943661971830986, 0.8873239436619719, 0.8661971830985915, 0.13732394366197184, 0.12323943661971831, 0.10915492957746478, 0.11267605633802817, 0.8415492957746479, 0.11267605633802817, 0.10915492957746478, 0.11267605633802817, 0.11267605633802817, 0.10915492957746478, 0.11267605633802817, 0.11267605633802817, 0.10915492957746478, 0.1056338028169014, 0.1056338028169014, 0.1056338028169014, 0.1056338028169014, 0.10915492957746478, 0.10915492957746478, 0.9471830985915493, 0.9471830985915493, 0.10915492957746478, 0.12323943661971831, 0.1267605633802817, 0.16901408450704225, 0.19718309859154928, 0.897887323943662, 0.24295774647887325, 0.4295774647887324, 0.9366197183098591, 0.9401408450704225, 0.9401408450704225, 0.9366197183098591, 0.9295774647887324, 0.30633802816901406, 0.23591549295774647, 0.17253521126760563, 0.8133802816901409, 0.8169014084507042, 0.823943661971831, 0.8380281690140845, 0.8732394366197183, 0.9225352112676056, 0.9366197183098591, 0.926056338028169, 0.8802816901408451, 0.8626760563380281, 0.823943661971831, 0.8204225352112676, 0.8133802816901409, 0.8133802816901409, 0.11619718309859155, 0.11619718309859155, 0.11619718309859155, 0.11619718309859155, 0.11267605633802817, 0.11267605633802817, 0.11267605633802817, 0.11267605633802817, 0.11267605633802817, 0.11267605633802817, 0.10915492957746478, 0.10915492957746478, 0.10915492957746478, 0.10915492957746478, 0.10915492957746478, 0.10915492957746478, 0.10915492957746478, 0.10915492957746478, 0.10915492957746478, 0.10915492957746478, 0.10915492957746478, 0.10915492957746478, 0.10915492957746478, 0.10915492957746478, 0.11267605633802817, 0.10915492957746478, 0.1267605633802817, 0.14788732394366197, 0.15845070422535212, 0.12323943661971831, 0.11267605633802817, 0.11267605633802817, 0.11267605633802817, 0.11267605633802817, 0.11619718309859155, 0.11267605633802817, 0.11267605633802817, 0.11267605633802817, 0.8767605633802817, 0.8873239436619719, 0.8943661971830986, 0.8838028169014085, 0.8697183098591549, 0.12323943661971831, 0.11971830985915492, 0.11971830985915492, 0.11971830985915492, 0.11619718309859155, 0.8802816901408451, 0.7288732394366197, 0.28169014084507044, 0.1267605633802817, 0.11971830985915492, 0.11971830985915492, 0.11971830985915492, 0.11971830985915492, 0.11971830985915492, 0.11619718309859155, 0.11619718309859155, 0.11619718309859155, 0.11619718309859155, 0.11619718309859155, 0.11619718309859155, 0.11971830985915492, 0.12323943661971831, 0.1267605633802817, 0.1267605633802817, 0.1267605633802817, 0.13028169014084506, 0.13380281690140844, 0.13380281690140844, 0.13028169014084506, 0.1267605633802817, 0.11971830985915492, 0.12323943661971831, 0.6197183098591549, 0.18661971830985916, 0.16549295774647887, 0.14084507042253522, 0.14084507042253522, 0.13732394366197184, 0.13380281690140844, 0.13732394366197184, 0.13380281690140844, 0.13732394366197184, 0.13732394366197184, 0.1619718309859155, 0.1795774647887324, 0.14084507042253522, 0.1443661971830986, 0.14788732394366197, 0.13732394366197184, 0.13028169014084506, 0.13028169014084506, 0.13028169014084506, 0.13028169014084506, 0.13028169014084506, 0.13028169014084506, 0.13028169014084506, 0.13028169014084506, 0.13028169014084506, 0.13028169014084506, 0.13028169014084506, 0.13028169014084506, 0.13028169014084506, 0.14084507042253522, 0.13380281690140844, 0.13380281690140844, 0.13380281690140844, 0.13380281690140844, 0.13380281690140844, 0.13732394366197184, 0.1443661971830986, 0.15492957746478872, 0.22535211267605634, 0.8309859154929577, 0.9154929577464789, 0.9401408450704225, 0.926056338028169, 0.8838028169014085, 0.7887323943661971, 0.2112676056338028, 0.4084507042253521, 0.6866197183098591, 0.4225352112676056, 0.36971830985915494, 0.45422535211267606, 0.3415492957746479, 0.34507042253521125, 0.4859154929577465, 0.852112676056338, 0.2112676056338028, 0.19014084507042253, 0.18661971830985916, 0.18661971830985916, 0.18661971830985916, 0.17253521126760563, 0.8204225352112676, 0.8274647887323944, 0.8380281690140845, 0.8485915492957746, 0.8556338028169014, 0.8697183098591549, 0.8802816901408451, 0.8943661971830986, 0.926056338028169, 0.9471830985915493, 0.9330985915492958, 0.926056338028169, 0.8873239436619719, 0.8767605633802817, 0.8556338028169014, 0.8485915492957746, 0.8485915492957746, 0.8309859154929577, 0.8204225352112676, 0.8169014084507042, 0.176056338028169, 0.17253521126760563, 0.17253521126760563, 0.17253521126760563, 0.176056338028169, 0.176056338028169, 0.176056338028169, 0.1795774647887324, 0.1795774647887324, 0.1795774647887324, 0.18309859154929578, 0.18309859154929578, 0.19718309859154928, 0.20774647887323944, 0.23943661971830985, 0.2535211267605634, 0.2605633802816901, 0.2746478873239437, 0.2992957746478873, 0.36619718309859156, 0.45774647887323944], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/UvdE.gap.json b/pfam_gap_rates/UvdE.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a85782fcacf70f8afa490c253cff7038b1a61b56
--- /dev/null
+++ b/pfam_gap_rates/UvdE.gap.json
@@ -0,0 +1 @@
+{"family": "UvdE", "n_seqs": 342, "length": 312, "gap_rates": [0.36257309941520466, 0.31871345029239767, 0.3157894736842105, 0.30409356725146197, 0.30409356725146197, 0.2982456140350877, 0.2953216374269006, 0.29239766081871343, 0.2894736842105263, 0.28654970760233917, 0.2982456140350877, 0.2953216374269006, 0.30409356725146197, 0.30994152046783624, 0.2982456140350877, 0.2894736842105263, 0.2807017543859649, 0.26900584795321636, 0.260233918128655, 0.23391812865497075, 0.21052631578947367, 0.20175438596491227, 0.1871345029239766, 0.1783625730994152, 0.17543859649122806, 0.1608187134502924, 0.15204678362573099, 0.15204678362573099, 0.14619883040935672, 0.15789473684210525, 0.17251461988304093, 0.19883040935672514, 0.8304093567251462, 0.8508771929824561, 0.8508771929824561, 0.8538011695906432, 0.8567251461988304, 0.8567251461988304, 0.8567251461988304, 0.8596491228070176, 0.8596491228070176, 0.8596491228070176, 0.8596491228070176, 0.8596491228070176, 0.8596491228070176, 0.8596491228070176, 0.8596491228070176, 0.8596491228070176, 0.8596491228070176, 0.8596491228070176, 0.8596491228070176, 0.8596491228070176, 0.8596491228070176, 0.8567251461988304, 0.8567251461988304, 0.8567251461988304, 0.8538011695906432, 0.8508771929824561, 0.8391812865497076, 0.6345029239766082, 0.14619883040935672, 0.11695906432748537, 0.09064327485380116, 0.08771929824561403, 0.08771929824561403, 0.08771929824561403, 0.08771929824561403, 0.09064327485380116, 0.09064327485380116, 0.0847953216374269, 0.0847953216374269, 0.07894736842105263, 0.07894736842105263, 0.07602339181286549, 0.06432748538011696, 0.06140350877192982, 0.05263157894736842, 0.04678362573099415, 0.04678362573099415, 0.049707602339181284, 0.04678362573099415, 0.04678362573099415, 0.04678362573099415, 0.049707602339181284, 0.049707602339181284, 0.049707602339181284, 0.05263157894736842, 0.049707602339181284, 0.04678362573099415, 0.04678362573099415, 0.04678362573099415, 0.04678362573099415, 0.049707602339181284, 0.049707602339181284, 0.05263157894736842, 0.04093567251461988, 0.04093567251461988, 0.04093567251461988, 0.04093567251461988, 0.04093567251461988, 0.04093567251461988, 0.038011695906432746, 0.049707602339181284, 0.9239766081871345, 0.6608187134502924, 0.049707602339181284, 0.05263157894736842, 0.04093567251461988, 0.043859649122807015, 0.04678362573099415, 0.04093567251461988, 0.04093567251461988, 0.1695906432748538, 0.038011695906432746, 0.038011695906432746, 0.03508771929824561, 0.03508771929824561, 0.03508771929824561, 0.03508771929824561, 0.03216374269005848, 0.03216374269005848, 0.038011695906432746, 0.043859649122807015, 0.04093567251461988, 0.04093567251461988, 0.04093567251461988, 0.04093567251461988, 0.043859649122807015, 0.043859649122807015, 0.043859649122807015, 0.038011695906432746, 0.038011695906432746, 0.038011695906432746, 0.03216374269005848, 0.03216374269005848, 0.03216374269005848, 0.03216374269005848, 0.03216374269005848, 0.03508771929824561, 0.03216374269005848, 0.03216374269005848, 0.03216374269005848, 0.03216374269005848, 0.03216374269005848, 0.03216374269005848, 0.03508771929824561, 0.03508771929824561, 0.03508771929824561, 0.03216374269005848, 0.03216374269005848, 0.03216374269005848, 0.03216374269005848, 0.03216374269005848, 0.03508771929824561, 0.038011695906432746, 0.038011695906432746, 0.03508771929824561, 0.03508771929824561, 0.03508771929824561, 0.03508771929824561, 0.038011695906432746, 0.038011695906432746, 0.038011695906432746, 0.04093567251461988, 0.038011695906432746, 0.04093567251461988, 0.038011695906432746, 0.038011695906432746, 0.04093567251461988, 0.06140350877192982, 0.08771929824561403, 0.08771929824561403, 0.11695906432748537, 0.7222222222222222, 0.8070175438596491, 0.7953216374269005, 0.695906432748538, 0.16374269005847952, 0.08771929824561403, 0.05847953216374269, 0.03508771929824561, 0.03508771929824561, 0.03508771929824561, 0.03508771929824561, 0.03508771929824561, 0.09649122807017543, 0.09649122807017543, 0.09649122807017543, 0.08771929824561403, 0.07602339181286549, 0.038011695906432746, 0.038011695906432746, 0.038011695906432746, 0.04093567251461988, 0.038011695906432746, 0.03508771929824561, 0.03508771929824561, 0.03508771929824561, 0.03508771929824561, 0.03508771929824561, 0.03508771929824561, 0.03508771929824561, 0.03508771929824561, 0.038011695906432746, 0.04093567251461988, 0.038011695906432746, 0.03508771929824561, 0.03508771929824561, 0.038011695906432746, 0.038011695906432746, 0.038011695906432746, 0.03508771929824561, 0.03216374269005848, 0.03216374269005848, 0.03216374269005848, 0.03216374269005848, 0.03216374269005848, 0.03216374269005848, 0.03508771929824561, 0.03216374269005848, 0.029239766081871343, 0.03216374269005848, 0.03216374269005848, 0.03216374269005848, 0.03216374269005848, 0.03216374269005848, 0.03216374269005848, 0.03216374269005848, 0.029239766081871343, 0.029239766081871343, 0.03216374269005848, 0.03216374269005848, 0.043859649122807015, 0.05263157894736842, 0.04093567251461988, 0.03216374269005848, 0.03216374269005848, 0.03216374269005848, 0.03216374269005848, 0.03216374269005848, 0.03216374269005848, 0.03216374269005848, 0.03508771929824561, 0.03508771929824561, 0.03508771929824561, 0.03508771929824561, 0.03216374269005848, 0.03508771929824561, 0.39473684210526316, 0.8070175438596491, 0.8508771929824561, 0.8157894736842105, 0.8011695906432749, 0.2309941520467836, 0.17251461988304093, 0.09941520467836257, 0.07309941520467836, 0.05555555555555555, 0.049707602339181284, 0.049707602339181284, 0.08187134502923976, 0.08771929824561403, 0.1286549707602339, 0.48830409356725146, 0.9210526315789473, 0.5584795321637427, 0.4590643274853801, 0.40058479532163743, 0.049707602339181284, 0.043859649122807015, 0.043859649122807015, 0.043859649122807015, 0.04093567251461988, 0.04093567251461988, 0.04093567251461988, 0.07309941520467836, 0.09064327485380116, 0.21637426900584794, 0.14912280701754385, 0.09941520467836257, 0.05263157894736842, 0.05263157894736842, 0.05263157894736842, 0.05555555555555555, 0.05555555555555555, 0.05847953216374269, 0.05847953216374269, 0.05847953216374269, 0.05847953216374269, 0.07017543859649122, 0.07602339181286549, 0.4239766081871345, 0.18128654970760233, 0.16374269005847952, 0.15789473684210525, 0.16666666666666666, 0.1286549707602339, 0.12573099415204678, 0.1286549707602339, 0.13742690058479531, 0.14912280701754385, 0.15204678362573099, 0.17251461988304093, 0.1783625730994152, 0.19005847953216373, 0.20760233918128654, 0.23391812865497075, 0.2543859649122807, 0.2631578947368421, 0.2894736842105263, 0.3742690058479532, 0.6812865497076024], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/V-SNARE.gap.json b/pfam_gap_rates/V-SNARE.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a32fe09aaee7e98979d356bb7d2ab1a26195848a
--- /dev/null
+++ b/pfam_gap_rates/V-SNARE.gap.json
@@ -0,0 +1 @@
+{"family": "V-SNARE", "n_seqs": 429, "length": 81, "gap_rates": [0.40093240093240096, 0.2331002331002331, 0.18414918414918416, 0.1655011655011655, 0.15384615384615385, 0.13986013986013987, 0.1351981351981352, 0.13286713286713286, 0.13053613053613053, 0.12354312354312354, 0.12354312354312354, 0.11655011655011654, 0.11421911421911422, 0.10256410256410256, 0.10023310023310024, 0.09324009324009325, 0.09557109557109557, 0.08857808857808858, 0.11655011655011654, 0.09557109557109557, 0.7668997668997669, 0.06526806526806526, 0.05128205128205128, 0.04895104895104895, 0.046620046620046623, 0.04195804195804196, 0.039627039627039624, 0.03496503496503497, 0.030303030303030304, 0.027972027972027972, 0.027972027972027972, 0.027972027972027972, 0.027972027972027972, 0.02564102564102564, 0.02564102564102564, 0.027972027972027972, 0.027972027972027972, 0.027972027972027972, 0.027972027972027972, 0.02564102564102564, 0.02097902097902098, 0.013986013986013986, 0.013986013986013986, 0.013986013986013986, 0.009324009324009324, 0.009324009324009324, 0.006993006993006993, 0.006993006993006993, 0.004662004662004662, 0.004662004662004662, 0.009324009324009324, 0.009324009324009324, 0.8927738927738927, 0.013986013986013986, 0.037296037296037296, 0.018648018648018648, 0.011655011655011656, 0.009324009324009324, 0.011655011655011656, 0.011655011655011656, 0.013986013986013986, 0.016317016317016316, 0.016317016317016316, 0.013986013986013986, 0.016317016317016316, 0.016317016317016316, 0.016317016317016316, 0.016317016317016316, 0.016317016317016316, 0.016317016317016316, 0.018648018648018648, 0.018648018648018648, 0.018648018648018648, 0.018648018648018648, 0.02097902097902098, 0.027972027972027972, 0.04195804195804196, 0.055944055944055944, 0.07925407925407925, 0.22843822843822845, 0.6410256410256411], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/VARLMGL.gap.json b/pfam_gap_rates/VARLMGL.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..dba9ef84ab44fa6f9289a7a2c3775d4a33f280c6
--- /dev/null
+++ b/pfam_gap_rates/VARLMGL.gap.json
@@ -0,0 +1 @@
+{"family": "VARLMGL", "n_seqs": 417, "length": 32, "gap_rates": [0.8513189448441247, 0.7889688249400479, 0.7577937649880095, 0.7314148681055156, 0.6618705035971223, 0.5899280575539568, 0.5299760191846523, 0.46522781774580335, 0.407673860911271, 0.3645083932853717, 0.2973621103117506, 0.19904076738609114, 0.047961630695443645, 0.011990407673860911, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.02877697841726619, 0.03357314148681055, 0.045563549160671464, 0.21342925659472423, 0.3764988009592326, 0.5347721822541966, 0.7553956834532374, 0.9040767386091128], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/VEFS-Box.gap.json b/pfam_gap_rates/VEFS-Box.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..43e20046d858413e80268a1b06d8d9b8204333b3
--- /dev/null
+++ b/pfam_gap_rates/VEFS-Box.gap.json
@@ -0,0 +1 @@
+{"family": "VEFS-Box", "n_seqs": 218, "length": 136, "gap_rates": [0.6697247706422018, 0.5412844036697247, 0.5045871559633027, 0.4954128440366973, 0.4908256880733945, 0.44495412844036697, 0.42660550458715596, 0.41743119266055045, 0.41743119266055045, 0.38990825688073394, 0.37155963302752293, 0.3532110091743119, 0.3532110091743119, 0.3211009174311927, 0.3119266055045872, 0.3073394495412844, 0.30275229357798167, 0.24311926605504589, 0.22935779816513763, 0.22935779816513763, 0.22477064220183487, 0.22477064220183487, 0.22018348623853212, 0.21559633027522937, 0.21559633027522937, 0.21100917431192662, 0.21559633027522937, 0.19724770642201836, 0.2018348623853211, 0.19724770642201836, 0.18807339449541285, 0.1834862385321101, 0.1834862385321101, 0.1834862385321101, 0.5871559633027523, 0.5504587155963303, 0.2018348623853211, 0.1834862385321101, 0.16055045871559634, 0.16055045871559634, 0.14220183486238533, 0.12385321100917432, 0.0779816513761468, 0.045871559633027525, 0.04128440366972477, 0.03211009174311927, 0.03669724770642202, 0.03669724770642202, 0.03211009174311927, 0.03211009174311927, 0.03211009174311927, 0.03669724770642202, 0.03669724770642202, 0.027522935779816515, 0.03211009174311927, 0.04128440366972477, 0.05504587155963303, 0.045871559633027525, 0.03211009174311927, 0.04128440366972477, 0.03211009174311927, 0.03211009174311927, 0.03211009174311927, 0.03211009174311927, 0.027522935779816515, 0.027522935779816515, 0.027522935779816515, 0.027522935779816515, 0.027522935779816515, 0.027522935779816515, 0.027522935779816515, 0.027522935779816515, 0.03211009174311927, 0.027522935779816515, 0.027522935779816515, 0.027522935779816515, 0.027522935779816515, 0.027522935779816515, 0.027522935779816515, 0.027522935779816515, 0.03669724770642202, 0.05504587155963303, 0.06422018348623854, 0.06422018348623854, 0.06422018348623854, 0.06880733944954129, 0.06880733944954129, 0.06880733944954129, 0.06880733944954129, 0.06880733944954129, 0.06880733944954129, 0.06880733944954129, 0.06880733944954129, 0.06880733944954129, 0.06880733944954129, 0.06880733944954129, 0.07339449541284404, 0.07339449541284404, 0.07339449541284404, 0.07339449541284404, 0.07339449541284404, 0.07339449541284404, 0.07339449541284404, 0.07339449541284404, 0.08256880733944955, 0.0871559633027523, 0.518348623853211, 0.07339449541284404, 0.0871559633027523, 0.09174311926605505, 0.0963302752293578, 0.0963302752293578, 0.10091743119266056, 0.10550458715596331, 0.11467889908256881, 0.11926605504587157, 0.11926605504587157, 0.12385321100917432, 0.12385321100917432, 0.12385321100917432, 0.12385321100917432, 0.12844036697247707, 0.12844036697247707, 0.12844036697247707, 0.13302752293577982, 0.13302752293577982, 0.14220183486238533, 0.1559633027522936, 0.16055045871559634, 0.17889908256880735, 0.18807339449541285, 0.19724770642201836, 0.22018348623853212, 0.3256880733944954, 0.40825688073394495, 0.5779816513761468], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/VF530.gap.json b/pfam_gap_rates/VF530.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..4252b085ec4d0ec046610244bebe277e915cbd2d
--- /dev/null
+++ b/pfam_gap_rates/VF530.gap.json
@@ -0,0 +1 @@
+{"family": "VF530", "n_seqs": 232, "length": 63, "gap_rates": [0.4956896551724138, 0.07758620689655173, 0.034482758620689655, 0.021551724137931036, 0.004310344827586207, 0.004310344827586207, 0.004310344827586207, 0.004310344827586207, 0.004310344827586207, 0.004310344827586207, 0.004310344827586207, 0.004310344827586207, 0.004310344827586207, 0.004310344827586207, 0.004310344827586207, 0.004310344827586207, 0.004310344827586207, 0.004310344827586207, 0.004310344827586207, 0.004310344827586207, 0.004310344827586207, 0.004310344827586207, 0.004310344827586207, 0.004310344827586207, 0.004310344827586207, 0.004310344827586207, 0.004310344827586207, 0.004310344827586207, 0.004310344827586207, 0.004310344827586207, 0.004310344827586207, 0.0, 0.0, 0.0, 0.0, 0.004310344827586207, 0.004310344827586207, 0.004310344827586207, 0.004310344827586207, 0.004310344827586207, 0.004310344827586207, 0.004310344827586207, 0.004310344827586207, 0.004310344827586207, 0.004310344827586207, 0.004310344827586207, 0.004310344827586207, 0.004310344827586207, 0.004310344827586207, 0.004310344827586207, 0.004310344827586207, 0.004310344827586207, 0.004310344827586207, 0.004310344827586207, 0.004310344827586207, 0.004310344827586207, 0.004310344827586207, 0.004310344827586207, 0.004310344827586207, 0.004310344827586207, 0.004310344827586207, 0.004310344827586207, 0.034482758620689655], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/VID27.gap.json b/pfam_gap_rates/VID27.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..4a8f65b7983ee3cb54a9f88155574d4544b37ae2
--- /dev/null
+++ b/pfam_gap_rates/VID27.gap.json
@@ -0,0 +1 @@
+{"family": "VID27", "n_seqs": 302, "length": 873, "gap_rates": [0.6456953642384106, 0.6423841059602649, 0.6390728476821192, 0.6390728476821192, 0.6357615894039735, 0.6225165562913907, 0.6788079470198676, 0.6788079470198676, 0.6854304635761589, 0.6788079470198676, 0.6158940397350994, 0.6192052980132451, 0.609271523178808, 0.609271523178808, 0.6158940397350994, 0.6059602649006622, 0.5993377483443708, 0.5960264900662252, 0.5960264900662252, 0.5894039735099338, 0.5894039735099338, 0.5827814569536424, 0.5827814569536424, 0.5827814569536424, 0.6026490066225165, 0.5794701986754967, 0.5794701986754967, 0.5794701986754967, 0.5794701986754967, 0.5794701986754967, 0.5794701986754967, 0.5794701986754967, 0.9271523178807947, 0.5993377483443708, 0.5993377483443708, 0.6026490066225165, 0.6026490066225165, 0.5794701986754967, 0.5794701986754967, 0.5761589403973509, 0.5728476821192053, 0.5728476821192053, 0.5728476821192053, 0.5728476821192053, 0.5728476821192053, 0.5728476821192053, 0.5728476821192053, 0.5728476821192053, 0.5662251655629139, 0.5662251655629139, 0.5662251655629139, 0.5662251655629139, 0.5662251655629139, 0.5662251655629139, 0.5662251655629139, 0.9370860927152318, 0.5860927152317881, 0.5662251655629139, 0.5662251655629139, 0.5662251655629139, 0.5662251655629139, 0.5662251655629139, 0.5629139072847682, 0.5629139072847682, 0.5629139072847682, 0.5629139072847682, 0.5629139072847682, 0.5629139072847682, 0.5629139072847682, 0.5695364238410596, 0.5629139072847682, 0.5629139072847682, 0.5629139072847682, 0.5629139072847682, 0.5993377483443708, 0.5860927152317881, 0.5827814569536424, 0.5827814569536424, 0.5827814569536424, 0.5794701986754967, 0.5761589403973509, 0.5728476821192053, 0.5728476821192053, 0.5728476821192053, 0.5761589403973509, 0.6721854304635762, 0.7350993377483444, 0.9238410596026491, 0.7218543046357616, 0.7549668874172185, 0.7980132450331126, 0.9470198675496688, 0.8807947019867549, 0.7880794701986755, 0.7483443708609272, 0.695364238410596, 0.6854304635761589, 0.5662251655629139, 0.5562913907284768, 0.5596026490066225, 0.5596026490066225, 0.5629139072847682, 0.5629139072847682, 0.5629139072847682, 0.5629139072847682, 0.5629139072847682, 0.5629139072847682, 0.5629139072847682, 0.5629139072847682, 0.5629139072847682, 0.5629139072847682, 0.5629139072847682, 0.5629139072847682, 0.5629139072847682, 0.5629139072847682, 0.6854304635761589, 0.5761589403973509, 0.5662251655629139, 0.5662251655629139, 0.5662251655629139, 0.5629139072847682, 0.5596026490066225, 0.5596026490066225, 0.5629139072847682, 0.5695364238410596, 0.5761589403973509, 0.5695364238410596, 0.5629139072847682, 0.5629139072847682, 0.5761589403973509, 0.5728476821192053, 0.5629139072847682, 0.5596026490066225, 0.5596026490066225, 0.5629139072847682, 0.5629139072847682, 0.5629139072847682, 0.5629139072847682, 0.5596026490066225, 0.5596026490066225, 0.9470198675496688, 0.5596026490066225, 0.6324503311258278, 0.5662251655629139, 0.5629139072847682, 0.5596026490066225, 0.5596026490066225, 0.5596026490066225, 0.5596026490066225, 0.5596026490066225, 0.5596026490066225, 0.5596026490066225, 0.5596026490066225, 0.5596026490066225, 0.5596026490066225, 0.5629139072847682, 0.5596026490066225, 0.5629139072847682, 0.5596026490066225, 0.5562913907284768, 0.5562913907284768, 0.5529801324503312, 0.5529801324503312, 0.5562913907284768, 0.5529801324503312, 0.5496688741721855, 0.5463576158940397, 0.543046357615894, 0.5463576158940397, 0.5463576158940397, 0.5463576158940397, 0.5463576158940397, 0.5463576158940397, 0.5463576158940397, 0.5496688741721855, 0.5463576158940397, 0.5463576158940397, 0.5463576158940397, 0.5529801324503312, 0.5529801324503312, 0.5529801324503312, 0.5562913907284768, 0.9370860927152318, 0.6589403973509934, 0.652317880794702, 0.6357615894039735, 0.609271523178808, 0.6026490066225165, 0.5993377483443708, 0.5894039735099338, 0.6125827814569537, 0.609271523178808, 0.6423841059602649, 0.6456953642384106, 0.6688741721854304, 0.6589403973509934, 0.6390728476821192, 0.6456953642384106, 0.652317880794702, 0.9403973509933775, 0.6655629139072847, 0.6490066225165563, 0.652317880794702, 0.6788079470198676, 0.6721854304635762, 0.6986754966887417, 0.6986754966887417, 0.7052980132450332, 0.7052980132450332, 0.9470198675496688, 0.8377483443708609, 0.8509933774834437, 0.8344370860927153, 0.8278145695364238, 0.8278145695364238, 0.8377483443708609, 0.8642384105960265, 0.8278145695364238, 0.7947019867549668, 0.7814569536423841, 0.7582781456953642, 0.7549668874172185, 0.7417218543046358, 0.7086092715231788, 0.6821192052980133, 0.6788079470198676, 0.6754966887417219, 0.6556291390728477, 0.6589403973509934, 0.6721854304635762, 0.6589403973509934, 0.6490066225165563, 0.6423841059602649, 0.6589403973509934, 0.6556291390728477, 0.652317880794702, 0.6556291390728477, 0.6589403973509934, 0.6589403973509934, 0.6622516556291391, 0.6920529801324503, 0.6920529801324503, 0.6788079470198676, 0.6721854304635762, 0.6655629139072847, 0.6556291390728477, 0.6854304635761589, 0.7086092715231788, 0.7152317880794702, 0.7715231788079471, 0.7715231788079471, 0.8410596026490066, 0.8211920529801324, 0.8013245033112583, 0.7880794701986755, 0.7350993377483444, 0.9437086092715232, 0.9238410596026491, 0.7019867549668874, 0.6490066225165563, 0.6192052980132451, 0.6026490066225165, 0.6026490066225165, 0.5993377483443708, 0.5960264900662252, 0.5993377483443708, 0.5894039735099338, 0.5827814569536424, 0.5860927152317881, 0.5927152317880795, 0.5927152317880795, 0.6158940397350994, 0.6423841059602649, 0.7781456953642384, 0.7019867549668874, 0.5562913907284768, 0.5562913907284768, 0.5463576158940397, 0.5529801324503312, 0.5894039735099338, 0.5264900662251656, 0.5231788079470199, 0.5231788079470199, 0.5264900662251656, 0.5264900662251656, 0.5231788079470199, 0.5231788079470199, 0.5231788079470199, 0.5231788079470199, 0.5165562913907285, 0.5198675496688742, 0.5198675496688742, 0.5231788079470199, 0.5231788079470199, 0.5165562913907285, 0.5165562913907285, 0.5198675496688742, 0.5198675496688742, 0.5165562913907285, 0.5165562913907285, 0.5264900662251656, 0.5231788079470199, 0.5231788079470199, 0.5397350993377483, 0.5298013245033113, 0.5364238410596026, 0.5198675496688742, 0.5231788079470199, 0.5231788079470199, 0.5198675496688742, 0.5198675496688742, 0.5198675496688742, 0.5198675496688742, 0.5198675496688742, 0.9304635761589404, 0.9139072847682119, 0.5198675496688742, 0.5264900662251656, 0.5231788079470199, 0.5165562913907285, 0.5165562913907285, 0.5264900662251656, 0.5132450331125827, 0.5132450331125827, 0.5165562913907285, 0.5165562913907285, 0.5132450331125827, 0.5132450331125827, 0.5198675496688742, 0.9238410596026491, 0.5165562913907285, 0.5331125827814569, 0.5165562913907285, 0.5066225165562914, 0.5066225165562914, 0.5066225165562914, 0.5033112582781457, 0.5, 0.5, 0.5, 0.5, 0.4966887417218543, 0.4966887417218543, 0.49337748344370863, 0.49337748344370863, 0.49337748344370863, 0.49337748344370863, 0.4966887417218543, 0.4966887417218543, 0.49337748344370863, 0.49337748344370863, 0.49337748344370863, 0.4900662251655629, 0.4867549668874172, 0.4867549668874172, 0.4867549668874172, 0.4867549668874172, 0.4900662251655629, 0.5960264900662252, 0.5066225165562914, 0.5099337748344371, 0.5, 0.4966887417218543, 0.9437086092715232, 0.9337748344370861, 0.4867549668874172, 0.4735099337748344, 0.4337748344370861, 0.39403973509933776, 0.39403973509933776, 0.39403973509933776, 0.39403973509933776, 0.39403973509933776, 0.39403973509933776, 0.39072847682119205, 0.40066225165562913, 0.39403973509933776, 0.39072847682119205, 0.39072847682119205, 0.39072847682119205, 0.39072847682119205, 0.39072847682119205, 0.39072847682119205, 0.39072847682119205, 0.39072847682119205, 0.39072847682119205, 0.39072847682119205, 0.39072847682119205, 0.39072847682119205, 0.39072847682119205, 0.39403973509933776, 0.39403973509933776, 0.39403973509933776, 0.39403973509933776, 0.39403973509933776, 0.39403973509933776, 0.3973509933774834, 0.40066225165562913, 0.40397350993377484, 0.4271523178807947, 0.4271523178807947, 0.4503311258278146, 0.4470198675496689, 0.423841059602649, 0.40397350993377484, 0.3973509933774834, 0.39403973509933776, 0.3973509933774834, 0.3973509933774834, 0.40066225165562913, 0.3973509933774834, 0.39403973509933776, 0.38079470198675497, 0.3841059602649007, 0.9470198675496688, 0.847682119205298, 0.3841059602649007, 0.37748344370860926, 0.3841059602649007, 0.39072847682119205, 0.4105960264900662, 0.37748344370860926, 0.37748344370860926, 0.37748344370860926, 0.4337748344370861, 0.45364238410596025, 0.46688741721854304, 0.6225165562913907, 0.6589403973509934, 0.9039735099337748, 0.9205298013245033, 0.9304635761589404, 0.9172185430463576, 0.8874172185430463, 0.5298013245033113, 0.44370860927152317, 0.40397350993377484, 0.37748344370860926, 0.3675496688741722, 0.3576158940397351, 0.3576158940397351, 0.3543046357615894, 0.347682119205298, 0.3675496688741722, 0.3543046357615894, 0.3609271523178808, 0.3543046357615894, 0.3741721854304636, 0.41721854304635764, 0.4503311258278146, 0.6158940397350994, 0.8774834437086093, 0.9271523178807947, 0.9403973509933775, 0.9105960264900662, 0.8576158940397351, 0.5, 0.4470198675496689, 0.3973509933774834, 0.3741721854304636, 0.3576158940397351, 0.3543046357615894, 0.3543046357615894, 0.3509933774834437, 0.3509933774834437, 0.3576158940397351, 0.3708609271523179, 0.34105960264900664, 0.33112582781456956, 0.32781456953642385, 0.32781456953642385, 0.34105960264900664, 0.3841059602649007, 0.4337748344370861, 0.47019867549668876, 0.4470198675496689, 0.9370860927152318, 0.41721854304635764, 0.3841059602649007, 0.3543046357615894, 0.31125827814569534, 0.31125827814569534, 0.31125827814569534, 0.31125827814569534, 0.31125827814569534, 0.31125827814569534, 0.31125827814569534, 0.31456953642384106, 0.31456953642384106, 0.33112582781456956, 0.48344370860927155, 0.3443708609271523, 0.33112582781456956, 0.32450331125827814, 0.31125827814569534, 0.31456953642384106, 0.31125827814569534, 0.31125827814569534, 0.31125827814569534, 0.31125827814569534, 0.31125827814569534, 0.31125827814569534, 0.3079470198675497, 0.3079470198675497, 0.3079470198675497, 0.3079470198675497, 0.3079470198675497, 0.31125827814569534, 0.31456953642384106, 0.31788079470198677, 0.32450331125827814, 0.3079470198675497, 0.890728476821192, 0.9238410596026491, 0.8774834437086093, 0.47019867549668876, 0.3079470198675497, 0.30132450331125826, 0.30132450331125826, 0.304635761589404, 0.304635761589404, 0.31125827814569534, 0.33774834437086093, 0.32781456953642385, 0.31456953642384106, 0.3079470198675497, 0.3079470198675497, 0.3079470198675497, 0.31125827814569534, 0.2980132450331126, 0.304635761589404, 0.31125827814569534, 0.9437086092715232, 0.304635761589404, 0.31125827814569534, 0.304635761589404, 0.304635761589404, 0.2947019867549669, 0.28807947019867547, 0.2781456953642384, 0.27483443708609273, 0.2682119205298013, 0.2682119205298013, 0.26158940397350994, 0.26158940397350994, 0.25496688741721857, 0.25165562913907286, 0.25165562913907286, 0.24834437086092714, 0.24834437086092714, 0.24834437086092714, 0.24834437086092714, 0.24834437086092714, 0.25496688741721857, 0.2847682119205298, 0.8741721854304636, 0.890728476821192, 0.8940397350993378, 0.8774834437086093, 0.8576158940397351, 0.26158940397350994, 0.25496688741721857, 0.23841059602649006, 0.23509933774834438, 0.23178807947019867, 0.23178807947019867, 0.23178807947019867, 0.22847682119205298, 0.22847682119205298, 0.22847682119205298, 0.23178807947019867, 0.23178807947019867, 0.22847682119205298, 0.23178807947019867, 0.22847682119205298, 0.22847682119205298, 0.23178807947019867, 0.23178807947019867, 0.23178807947019867, 0.23509933774834438, 0.23509933774834438, 0.24503311258278146, 0.23841059602649006, 0.8543046357615894, 0.8609271523178808, 0.8509933774834437, 0.24503311258278146, 0.9403973509933775, 0.9470198675496688, 0.9337748344370861, 0.23509933774834438, 0.2913907284768212, 0.26490066225165565, 0.23841059602649006, 0.23178807947019867, 0.23178807947019867, 0.23178807947019867, 0.24503311258278146, 0.24503311258278146, 0.23178807947019867, 0.23509933774834438, 0.23509933774834438, 0.23841059602649006, 0.24172185430463577, 0.25496688741721857, 0.26158940397350994, 0.9072847682119205, 0.23841059602649006, 0.2251655629139073, 0.2251655629139073, 0.22185430463576158, 0.2119205298013245, 0.2119205298013245, 0.2152317880794702, 0.2152317880794702, 0.2119205298013245, 0.2119205298013245, 0.2119205298013245, 0.2119205298013245, 0.2119205298013245, 0.2152317880794702, 0.2152317880794702, 0.2152317880794702, 0.2152317880794702, 0.2152317880794702, 0.2152317880794702, 0.9072847682119205, 0.9072847682119205, 0.9403973509933775, 0.9403973509933775, 0.9403973509933775, 0.9072847682119205, 0.9072847682119205, 0.9072847682119205, 0.2152317880794702, 0.23841059602649006, 0.25165562913907286, 0.8841059602649006, 0.9105960264900662, 0.8211920529801324, 0.24834437086092714, 0.24503311258278146, 0.24172185430463577, 0.24834437086092714, 0.2582781456953642, 0.23178807947019867, 0.9403973509933775, 0.9403973509933775, 0.9470198675496688, 0.9437086092715232, 0.9403973509933775, 0.9337748344370861, 0.23178807947019867, 0.22847682119205298, 0.2119205298013245, 0.2119205298013245, 0.2152317880794702, 0.2152317880794702, 0.2152317880794702, 0.2119205298013245, 0.2119205298013245, 0.2119205298013245, 0.2119205298013245, 0.2119205298013245, 0.2152317880794702, 0.20860927152317882, 0.20860927152317882, 0.2052980132450331, 0.2052980132450331, 0.20860927152317882, 0.2052980132450331, 0.2052980132450331, 0.2052980132450331, 0.2052980132450331, 0.2052980132450331, 0.2052980132450331, 0.2052980132450331, 0.2052980132450331, 0.2052980132450331, 0.2052980132450331, 0.2052980132450331, 0.2052980132450331, 0.20198675496688742, 0.20198675496688742, 0.20198675496688742, 0.20198675496688742, 0.20198675496688742, 0.9470198675496688, 0.20198675496688742, 0.20198675496688742, 0.20198675496688742, 0.9470198675496688, 0.2052980132450331, 0.20198675496688742, 0.8509933774834437, 0.19536423841059603, 0.19536423841059603, 0.19536423841059603, 0.19536423841059603, 0.19536423841059603, 0.20860927152317882, 0.19205298013245034, 0.20860927152317882, 0.19205298013245034, 0.19536423841059603, 0.1986754966887417, 0.1986754966887417, 0.1986754966887417, 0.1986754966887417, 0.1986754966887417, 0.1986754966887417, 0.19536423841059603, 0.19536423841059603, 0.19536423841059603, 0.1986754966887417, 0.20198675496688742, 0.1986754966887417, 0.19536423841059603, 0.19536423841059603, 0.19536423841059603, 0.1986754966887417, 0.20198675496688742, 0.20198675496688742, 0.20198675496688742, 0.20198675496688742, 0.20198675496688742, 0.2052980132450331, 0.20860927152317882, 0.20860927152317882, 0.20860927152317882, 0.2185430463576159, 0.22185430463576158, 0.23178807947019867, 0.23509933774834438, 0.2913907284768212, 0.2913907284768212, 0.32781456953642385, 0.32450331125827814, 0.3079470198675497, 0.28807947019867547, 0.26158940397350994, 0.25165562913907286, 0.25496688741721857, 0.24834437086092714, 0.23509933774834438, 0.23841059602649006, 0.24172185430463577, 0.24172185430463577, 0.23841059602649006, 0.23509933774834438, 0.4966887417218543, 0.271523178807947, 0.23509933774834438, 0.22847682119205298, 0.22847682119205298, 0.2251655629139073, 0.22185430463576158, 0.2185430463576159, 0.2185430463576159, 0.2152317880794702, 0.2152317880794702, 0.2152317880794702, 0.2152317880794702, 0.2152317880794702, 0.2152317880794702, 0.2152317880794702, 0.22185430463576158, 0.2251655629139073, 0.2251655629139073, 0.2251655629139073, 0.33112582781456956, 0.3509933774834437, 0.4966887417218543, 0.6920529801324503, 0.5662251655629139, 0.4867549668874172, 0.40397350993377484, 0.26490066225165565, 0.23841059602649006, 0.23509933774834438, 0.23178807947019867, 0.22847682119205298, 0.2251655629139073, 0.2251655629139073, 0.2251655629139073, 0.24503311258278146, 0.8211920529801324, 0.8178807947019867, 0.25165562913907286, 0.2847682119205298, 0.304635761589404, 0.2582781456953642, 0.271523178807947, 0.2251655629139073, 0.22185430463576158, 0.22185430463576158, 0.22185430463576158, 0.22185430463576158, 0.22185430463576158, 0.22185430463576158, 0.22185430463576158, 0.22185430463576158, 0.2251655629139073, 0.2251655629139073, 0.2251655629139073, 0.2251655629139073, 0.2251655629139073, 0.2251655629139073, 0.2251655629139073, 0.2251655629139073, 0.22847682119205298, 0.22847682119205298, 0.22847682119205298, 0.23178807947019867, 0.23178807947019867, 0.23178807947019867, 0.24172185430463577, 0.24834437086092714, 0.26158940397350994, 0.26490066225165565, 0.271523178807947, 0.271523178807947, 0.304635761589404, 0.44039735099337746, 0.44370860927152317, 0.44370860927152317, 0.44370860927152317, 0.44370860927152317, 0.44370860927152317, 0.44370860927152317, 0.44370860927152317, 0.44039735099337746, 0.44370860927152317, 0.4503311258278146, 0.4602649006622517, 0.46357615894039733, 0.46688741721854304, 0.4768211920529801, 0.47019867549668876, 0.4735099337748344, 0.4768211920529801, 0.4768211920529801, 0.4735099337748344, 0.47019867549668876, 0.47019867549668876, 0.47019867549668876, 0.47019867549668876, 0.47019867549668876, 0.4735099337748344, 0.4735099337748344, 0.4735099337748344, 0.4768211920529801, 0.4867549668874172, 0.4900662251655629, 0.4966887417218543, 0.5033112582781457, 0.5132450331125827, 0.5264900662251656, 0.543046357615894, 0.5397350993377483, 0.5463576158940397, 0.5562913907284768, 0.5662251655629139, 0.5695364238410596, 0.5794701986754967, 0.5993377483443708, 0.6158940397350994, 0.6225165562913907, 0.6291390728476821, 0.6390728476821192, 0.6754966887417219, 0.7748344370860927, 0.9072847682119205], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/VKOR.gap.json b/pfam_gap_rates/VKOR.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..2fda1cd9fe88fb2999bebb677afa9ca13b2fbdce
--- /dev/null
+++ b/pfam_gap_rates/VKOR.gap.json
@@ -0,0 +1 @@
+{"family": "VKOR", "n_seqs": 798, "length": 162, "gap_rates": [0.8859649122807017, 0.41478696741854637, 0.17418546365914786, 0.10150375939849623, 0.07518796992481203, 0.06265664160401002, 0.05388471177944862, 0.04887218045112782, 0.047619047619047616, 0.047619047619047616, 0.047619047619047616, 0.046365914786967416, 0.043859649122807015, 0.043859649122807015, 0.042606516290726815, 0.042606516290726815, 0.041353383458646614, 0.041353383458646614, 0.041353383458646614, 0.040100250626566414, 0.041353383458646614, 0.041353383458646614, 0.38471177944862156, 0.42105263157894735, 0.4473684210526316, 0.9223057644110275, 0.5676691729323309, 0.20050125313283207, 0.16791979949874686, 0.07268170426065163, 0.05889724310776942, 0.06892230576441102, 0.08521303258145363, 0.9486215538847118, 0.11654135338345864, 0.08521303258145363, 0.06892230576441102, 0.06892230576441102, 0.06766917293233082, 0.05513784461152882, 0.924812030075188, 0.37969924812030076, 0.29949874686716793, 0.15288220551378445, 0.02882205513784461, 0.02756892230576441, 0.02756892230576441, 0.02882205513784461, 0.02882205513784461, 0.03007518796992481, 0.03132832080200501, 0.03258145363408521, 0.02882205513784461, 0.02631578947368421, 0.8784461152882206, 0.8834586466165414, 0.8922305764411027, 0.8947368421052632, 0.9060150375939849, 0.9072681704260651, 0.9160401002506265, 0.9060150375939849, 0.8959899749373433, 0.893483709273183, 0.8897243107769424, 0.8809523809523809, 0.8671679197994987, 0.016290726817042606, 0.013784461152882205, 0.018796992481203006, 0.017543859649122806, 0.931077694235589, 0.018796992481203006, 0.016290726817042606, 0.015037593984962405, 0.012531328320802004, 0.012531328320802004, 0.011278195488721804, 0.011278195488721804, 0.010025062656641603, 0.011278195488721804, 0.011278195488721804, 0.011278195488721804, 0.011278195488721804, 0.011278195488721804, 0.011278195488721804, 0.011278195488721804, 0.011278195488721804, 0.012531328320802004, 0.017543859649122806, 0.016290726817042606, 0.021303258145363407, 0.023809523809523808, 0.021303258145363407, 0.07518796992481203, 0.20050125313283207, 0.2694235588972431, 0.48621553884711777, 0.8233082706766918, 0.849624060150376, 0.8909774436090225, 0.899749373433584, 0.9197994987468672, 0.8959899749373433, 0.8834586466165414, 0.8383458646616542, 0.7543859649122807, 0.35964912280701755, 0.24060150375939848, 0.17919799498746866, 0.06140350877192982, 0.042606516290726815, 0.047619047619047616, 0.03258145363408521, 0.021303258145363407, 0.020050125313283207, 0.018796992481203006, 0.017543859649122806, 0.017543859649122806, 0.018796992481203006, 0.017543859649122806, 0.9022556390977443, 0.8834586466165414, 0.017543859649122806, 0.016290726817042606, 0.016290726817042606, 0.016290726817042606, 0.016290726817042606, 0.016290726817042606, 0.016290726817042606, 0.016290726817042606, 0.017543859649122806, 0.018796992481203006, 0.020050125313283207, 0.021303258145363407, 0.021303258145363407, 0.021303258145363407, 0.042606516290726815, 0.03508771929824561, 0.02756892230576441, 0.022556390977443608, 0.023809523809523808, 0.023809523809523808, 0.023809523809523808, 0.023809523809523808, 0.02506265664160401, 0.02506265664160401, 0.02506265664160401, 0.02506265664160401, 0.02506265664160401, 0.02506265664160401, 0.02506265664160401, 0.02506265664160401, 0.02631578947368421, 0.02756892230576441, 0.02882205513784461, 0.03007518796992481, 0.03383458646616541, 0.06516290726817042, 0.14536340852130325, 0.38095238095238093, 0.943609022556391], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/VPS28.gap.json b/pfam_gap_rates/VPS28.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..727cca20fc61692409876c78995a80a316eaad01
--- /dev/null
+++ b/pfam_gap_rates/VPS28.gap.json
@@ -0,0 +1 @@
+{"family": "VPS28", "n_seqs": 315, "length": 210, "gap_rates": [0.21904761904761905, 0.1111111111111111, 0.08888888888888889, 0.08253968253968254, 0.08253968253968254, 0.08253968253968254, 0.08253968253968254, 0.08253968253968254, 0.07936507936507936, 0.07936507936507936, 0.07936507936507936, 0.07936507936507936, 0.07936507936507936, 0.07936507936507936, 0.07936507936507936, 0.07936507936507936, 0.07936507936507936, 0.07936507936507936, 0.07936507936507936, 0.07936507936507936, 0.07936507936507936, 0.07301587301587302, 0.06984126984126984, 0.07301587301587302, 0.0761904761904762, 0.06984126984126984, 0.06666666666666667, 0.06984126984126984, 0.06984126984126984, 0.07301587301587302, 0.07301587301587302, 0.07301587301587302, 0.0761904761904762, 0.0761904761904762, 0.07301587301587302, 0.07301587301587302, 0.07301587301587302, 0.0761904761904762, 0.0761904761904762, 0.0761904761904762, 0.07936507936507936, 0.07936507936507936, 0.07936507936507936, 0.946031746031746, 0.9206349206349206, 0.6412698412698413, 0.5936507936507937, 0.10476190476190476, 0.10158730158730159, 0.08888888888888889, 0.08888888888888889, 0.09206349206349207, 0.11428571428571428, 0.10793650793650794, 0.1523809523809524, 0.8984126984126984, 0.07301587301587302, 0.07301587301587302, 0.06666666666666667, 0.06666666666666667, 0.06984126984126984, 0.07936507936507936, 0.0761904761904762, 0.0761904761904762, 0.07301587301587302, 0.06984126984126984, 0.07301587301587302, 0.06984126984126984, 0.07301587301587302, 0.07301587301587302, 0.06984126984126984, 0.06984126984126984, 0.06984126984126984, 0.06984126984126984, 0.07301587301587302, 0.8063492063492064, 0.07301587301587302, 0.07301587301587302, 0.07301587301587302, 0.07301587301587302, 0.07301587301587302, 0.07301587301587302, 0.08888888888888889, 0.1111111111111111, 0.11746031746031746, 0.12063492063492064, 0.11746031746031746, 0.7015873015873015, 0.7777777777777778, 0.8539682539682539, 0.8825396825396825, 0.8920634920634921, 0.9142857142857143, 0.9301587301587302, 0.9492063492063492, 0.9333333333333333, 0.9206349206349206, 0.9111111111111111, 0.8857142857142857, 0.873015873015873, 0.819047619047619, 0.7555555555555555, 0.6793650793650794, 0.6444444444444445, 0.5238095238095238, 0.4666666666666667, 0.42857142857142855, 0.3333333333333333, 0.3142857142857143, 0.3047619047619048, 0.08888888888888889, 0.07301587301587302, 0.07301587301587302, 0.06349206349206349, 0.06349206349206349, 0.06349206349206349, 0.06349206349206349, 0.06349206349206349, 0.06349206349206349, 0.06349206349206349, 0.06349206349206349, 0.06349206349206349, 0.06349206349206349, 0.06984126984126984, 0.06666666666666667, 0.06666666666666667, 0.06666666666666667, 0.07301587301587302, 0.07301587301587302, 0.07301587301587302, 0.0761904761904762, 0.0761904761904762, 0.0761904761904762, 0.0761904761904762, 0.07936507936507936, 0.07936507936507936, 0.07936507936507936, 0.0761904761904762, 0.07301587301587302, 0.07301587301587302, 0.0761904761904762, 0.06666666666666667, 0.06666666666666667, 0.06666666666666667, 0.06666666666666667, 0.06666666666666667, 0.06666666666666667, 0.06666666666666667, 0.06666666666666667, 0.06666666666666667, 0.06666666666666667, 0.06666666666666667, 0.06666666666666667, 0.06666666666666667, 0.06666666666666667, 0.06666666666666667, 0.06984126984126984, 0.926984126984127, 0.42857142857142855, 0.3047619047619048, 0.07301587301587302, 0.06666666666666667, 0.06349206349206349, 0.06349206349206349, 0.06349206349206349, 0.07936507936507936, 0.07936507936507936, 0.06984126984126984, 0.07301587301587302, 0.06349206349206349, 0.06666666666666667, 0.06984126984126984, 0.06666666666666667, 0.06666666666666667, 0.08253968253968254, 0.08253968253968254, 0.08888888888888889, 0.09206349206349207, 0.09523809523809523, 0.09523809523809523, 0.09523809523809523, 0.09523809523809523, 0.1111111111111111, 0.10158730158730159, 0.09523809523809523, 0.09841269841269841, 0.09841269841269841, 0.09841269841269841, 0.09841269841269841, 0.10158730158730159, 0.10158730158730159, 0.10476190476190476, 0.10476190476190476, 0.10476190476190476, 0.10793650793650794, 0.10793650793650794, 0.10793650793650794, 0.1111111111111111, 0.1111111111111111, 0.11428571428571428, 0.11746031746031746, 0.11746031746031746, 0.12698412698412698, 0.12698412698412698, 0.13015873015873017, 0.13015873015873017, 0.13333333333333333, 0.13333333333333333, 0.16507936507936508, 0.2], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/VTC.gap.json b/pfam_gap_rates/VTC.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..98e9b2a80058d215620402147fdf775acc204471
--- /dev/null
+++ b/pfam_gap_rates/VTC.gap.json
@@ -0,0 +1 @@
+{"family": "VTC", "n_seqs": 805, "length": 305, "gap_rates": [0.7006211180124223, 0.32546583850931676, 0.253416149068323, 0.22732919254658385, 0.20869565217391303, 0.18633540372670807, 0.1813664596273292, 0.17888198757763976, 0.17888198757763976, 0.17888198757763976, 0.17763975155279504, 0.17763975155279504, 0.17515527950310558, 0.17391304347826086, 0.17267080745341615, 0.168944099378882, 0.16645962732919253, 0.16770186335403728, 0.168944099378882, 0.16770186335403728, 0.16273291925465838, 0.16273291925465838, 0.15900621118012423, 0.15900621118012423, 0.15900621118012423, 0.1565217391304348, 0.1565217391304348, 0.15900621118012423, 0.1639751552795031, 0.16273291925465838, 0.16521739130434782, 0.39751552795031053, 0.5602484472049689, 0.5701863354037268, 0.5863354037267081, 0.5975155279503106, 0.8124223602484472, 0.8260869565217391, 0.8322981366459627, 0.8434782608695652, 0.8695652173913043, 0.8583850931677018, 0.8372670807453416, 0.7875776397515528, 0.8906832298136645, 0.8993788819875776, 0.9217391304347826, 0.9267080745341615, 0.9316770186335404, 0.9416149068322981, 0.9478260869565217, 0.9391304347826087, 0.9279503105590062, 0.924223602484472, 0.9167701863354037, 0.8919254658385093, 0.8881987577639752, 0.19875776397515527, 0.19006211180124225, 0.17391304347826086, 0.0906832298136646, 0.08695652173913043, 0.08074534161490683, 0.0782608695652174, 0.07577639751552795, 0.07577639751552795, 0.07577639751552795, 0.07577639751552795, 0.07577639751552795, 0.07453416149068323, 0.07453416149068323, 0.07453416149068323, 0.07453416149068323, 0.9192546583850931, 0.07577639751552795, 0.07577639751552795, 0.07577639751552795, 0.07577639751552795, 0.0782608695652174, 0.07577639751552795, 0.08198757763975155, 0.08322981366459627, 0.07701863354037267, 0.07453416149068323, 0.07329192546583851, 0.07329192546583851, 0.07453416149068323, 0.07204968944099378, 0.07577639751552795, 0.07204968944099378, 0.07329192546583851, 0.07577639751552795, 0.07453416149068323, 0.07453416149068323, 0.07453416149068323, 0.0782608695652174, 0.11428571428571428, 0.3416149068322981, 0.17391304347826086, 0.09813664596273292, 0.0968944099378882, 0.09192546583850932, 0.8658385093167702, 0.929192546583851, 0.6111801242236025, 0.09192546583850932, 0.08944099378881988, 0.084472049689441, 0.08198757763975155, 0.08198757763975155, 0.08322981366459627, 0.08322981366459627, 0.08198757763975155, 0.084472049689441, 0.6819875776397516, 0.6720496894409937, 0.662111801242236, 0.484472049689441, 0.09937888198757763, 0.0968944099378882, 0.09565217391304348, 0.09440993788819876, 0.0968944099378882, 0.09813664596273292, 0.09565217391304348, 0.09440993788819876, 0.09316770186335403, 0.09813664596273292, 0.10559006211180125, 0.11055900621118013, 0.12422360248447205, 0.13788819875776398, 0.1826086956521739, 0.18012422360248448, 0.17142857142857143, 0.1701863354037267, 0.17267080745341615, 0.17267080745341615, 0.17142857142857143, 0.5217391304347826, 0.5204968944099378, 0.5204968944099378, 0.5478260869565217, 0.5391304347826087, 0.5031055900621118, 0.9403726708074535, 0.32919254658385094, 0.27701863354037265, 0.22981366459627328, 0.20745341614906831, 0.20124223602484473, 0.19254658385093168, 0.18881987577639753, 0.18757763975155278, 0.1826086956521739, 0.19751552795031055, 0.20869565217391303, 0.21490683229813665, 0.7515527950310559, 0.6422360248447205, 0.6099378881987577, 0.6037267080745342, 0.5850931677018634, 0.5540372670807453, 0.4906832298136646, 0.4670807453416149, 0.4062111801242236, 0.34285714285714286, 0.18012422360248448, 0.1565217391304348, 0.15031055900621118, 0.14285714285714285, 0.14037267080745341, 0.13788819875776398, 0.1391304347826087, 0.13540372670807455, 0.14161490683229813, 0.14782608695652175, 0.14285714285714285, 0.1565217391304348, 0.1391304347826087, 0.929192546583851, 0.11801242236024845, 0.115527950310559, 0.115527950310559, 0.11428571428571428, 0.11304347826086956, 0.11304347826086956, 0.11677018633540373, 0.11801242236024845, 0.11677018633540373, 0.11677018633540373, 0.115527950310559, 0.115527950310559, 0.115527950310559, 0.115527950310559, 0.115527950310559, 0.11677018633540373, 0.11428571428571428, 0.11677018633540373, 0.3652173913043478, 0.13664596273291926, 0.11677018633540373, 0.11304347826086956, 0.11304347826086956, 0.10683229813664596, 0.10683229813664596, 0.10683229813664596, 0.10683229813664596, 0.10683229813664596, 0.10683229813664596, 0.10683229813664596, 0.10683229813664596, 0.10683229813664596, 0.10559006211180125, 0.11055900621118013, 0.11180124223602485, 0.115527950310559, 0.5937888198757764, 0.5751552795031056, 0.6173913043478261, 0.6062111801242236, 0.5838509316770186, 0.5652173913043478, 0.5652173913043478, 0.5565217391304348, 0.5739130434782609, 0.5925465838509317, 0.5850931677018634, 0.5080745341614907, 0.8298136645962733, 0.8049689440993789, 0.25093167701863356, 0.22981366459627328, 0.19875776397515527, 0.19254658385093168, 0.17763975155279504, 0.18633540372670807, 0.1937888198757764, 0.8919254658385093, 0.9093167701863354, 0.8732919254658386, 0.6322981366459627, 0.5763975155279503, 0.568944099378882, 0.5403726708074534, 0.5180124223602485, 0.493167701863354, 0.3937888198757764, 0.24347826086956523, 0.20372670807453416, 0.20124223602484473, 0.19006211180124225, 0.22236024844720498, 0.2670807453416149, 0.23975155279503105, 0.21739130434782608, 0.21366459627329193, 0.1826086956521739, 0.16770186335403728, 0.12795031055900621, 0.12795031055900621, 0.12795031055900621, 0.12795031055900621, 0.12795031055900621, 0.12795031055900621, 0.12919254658385093, 0.12919254658385093, 0.12919254658385093, 0.6496894409937888, 0.6732919254658385, 0.6285714285714286, 0.5652173913043478, 0.16149068322981366, 0.13043478260869565, 0.13043478260869565, 0.13167701863354037, 0.13291925465838508, 0.13167701863354037, 0.13167701863354037, 0.13291925465838508, 0.13167701863354037, 0.13167701863354037, 0.15403726708074533, 0.14037267080745341, 0.13540372670807455, 0.1341614906832298, 0.13540372670807455, 0.13788819875776398, 0.1391304347826087, 0.13788819875776398, 0.1453416149068323, 0.515527950310559, 0.1391304347826087, 0.14161490683229813, 0.14409937888198757, 0.14782608695652175, 0.14906832298136646, 0.1813664596273292, 0.22732919254658385, 0.2857142857142857, 0.3552795031055901, 0.46335403726708074, 0.5279503105590062, 0.7031055900621118], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/VWA_2.gap.json b/pfam_gap_rates/VWA_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..1e99ff952550bbc24c7faa5e1adf82f23a466709
--- /dev/null
+++ b/pfam_gap_rates/VWA_2.gap.json
@@ -0,0 +1 @@
+{"family": "VWA_2", "n_seqs": 3038, "length": 153, "gap_rates": [0.2748518762343647, 0.10171165240289665, 0.04476629361421988, 0.03949967083607637, 0.03390388413429888, 0.03324555628703094, 0.032587228439763, 0.032587228439763, 0.032916392363396975, 0.030941408821593155, 0.02534562211981567, 0.02468729427254773, 0.026333113890717578, 0.02534562211981567, 0.3554970375246873, 0.4167215273206057, 0.8396971691902567, 0.892034233048058, 0.9272547728768927, 0.9420671494404214, 0.934825543120474, 0.9042132982225148, 0.8699802501645819, 0.804805793285056, 0.39302172481895986, 0.38512179065174457, 0.3245556287030941, 0.1217906517445688, 0.018433179723502304, 0.009545753785385122, 0.008887425938117182, 0.008887425938117182, 0.008558262014483212, 0.009545753785385122, 0.008558262014483212, 0.007570770243581304, 0.007241606319947334, 0.0069124423963133645, 0.005595786701777485, 0.005266622778143515, 0.005595786701777485, 0.005595786701777485, 0.8986175115207373, 0.9223173140223832, 0.9154048716260698, 0.8502304147465438, 0.01152073732718894, 0.6428571428571429, 0.8275181040157998, 0.9140882159315339, 0.9015799868334431, 0.7755102040816326, 0.5134957208689928, 0.005595786701777485, 0.8074391046741277, 0.016129032258064516, 0.004937458854509546, 0.9397630019749835, 0.8759052007899935, 0.003949967083607637, 0.004279131007241606, 0.003949967083607637, 0.003949967083607637, 0.004937458854509546, 0.005266622778143515, 0.004608294930875576, 0.004279131007241606, 0.004937458854509546, 0.7047399605003292, 0.018433179723502304, 0.9476629361421988, 0.0069124423963133645, 0.9272547728768927, 0.9496379196840027, 0.9420671494404214, 0.8979591836734694, 0.0069124423963133645, 0.019091507570770244, 0.012508229098090849, 0.014812376563528637, 0.016787360105332456, 0.020737327188940093, 0.9377880184331797, 0.9483212639894667, 0.9180381830151415, 0.021395655036208033, 0.8900592495062541, 0.9397630019749835, 0.9256089532587228, 0.8252139565503621, 0.02402896642527979, 0.05826201448321264, 0.052666227781435156, 0.03851217906517446, 0.04048716260697827, 0.03851217906517446, 0.03225806451612903, 0.032587228439763, 0.03620803159973667, 0.025016458196181698, 0.022053982883475973, 0.020078999341672153, 0.020737327188940093, 0.020078999341672153, 0.032587228439763, 0.31040157998683343, 0.7771560236998025, 0.9473337722185649, 0.815339038841343, 0.7126398946675444, 0.2761685319289006, 0.02369980250164582, 0.02238314680710994, 0.02271231073074391, 0.02304147465437788, 0.02402896642527979, 0.02369980250164582, 0.02402896642527979, 0.02534562211981567, 0.025674786043449638, 0.026991441737985518, 0.028308097432521395, 0.029624753127057275, 0.031270572745227126, 0.032916392363396975, 0.03554970375246873, 0.03949967083607637, 0.044107965766951945, 0.06319947333772219, 0.07373271889400922, 0.12771560236998025, 0.6965108624094799, 0.8742593811718236, 0.9157340355497038, 0.9463462804476629, 0.9292297564186965, 0.8926925608953259, 0.7699144173798552, 0.4937458854509546, 0.39631336405529954, 0.22086899275839367, 0.15832784726793944, 0.10664911125740618, 0.09545753785385122, 0.09315339038841343, 0.09216589861751152, 0.09315339038841343, 0.09414088215931533, 0.09776168531928901, 0.11816984858459513, 0.1902567478604345, 0.2794601711652403, 0.7662936142198815], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/VWC.gap.json b/pfam_gap_rates/VWC.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..06e8254921ecd3351e6414d3cb89f81f93b07721
--- /dev/null
+++ b/pfam_gap_rates/VWC.gap.json
@@ -0,0 +1 @@
+{"family": "VWC", "n_seqs": 1520, "length": 77, "gap_rates": [0.19342105263157894, 0.19342105263157894, 0.14671052631578949, 0.0861842105263158, 0.04868421052631579, 0.039473684210526314, 0.024342105263157894, 0.010526315789473684, 0.005263157894736842, 0.003289473684210526, 0.001973684210526316, 0.0013157894736842105, 0.0013157894736842105, 0.0006578947368421052, 0.0006578947368421052, 0.0006578947368421052, 0.0006578947368421052, 0.1769736842105263, 0.6822368421052631, 0.8671052631578947, 0.8697368421052631, 0.8710526315789474, 0.868421052631579, 0.8473684210526315, 0.65, 0.0, 0.0, 0.9210526315789473, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.9282894736842106, 0.8631578947368421, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0006578947368421052, 0.0006578947368421052, 0.0875, 0.9493421052631579, 0.0, 0.02236842105263158, 0.08421052631578947, 0.8835526315789474, 0.9190789473684211, 0.9342105263157895, 0.9210526315789473, 0.9164473684210527, 0.7940789473684211, 0.017763157894736842, 0.003947368421052632, 0.003947368421052632, 0.005263157894736842, 0.007236842105263158, 0.01118421052631579, 0.8171052631578948, 0.6526315789473685, 0.5802631578947368, 0.03223684210526316, 0.025657894736842105, 0.01644736842105263, 0.01644736842105263, 0.01644736842105263, 0.01644736842105263, 0.015789473684210527, 0.017105263157894738, 0.017763157894736842, 0.9197368421052632, 0.9151315789473684, 0.02894736842105263, 0.03355263157894737], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Velvet.gap.json b/pfam_gap_rates/Velvet.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ce517d3d2ac26187fa3ddb26bea197fa6944522c
--- /dev/null
+++ b/pfam_gap_rates/Velvet.gap.json
@@ -0,0 +1 @@
+{"family": "Velvet", "n_seqs": 755, "length": 370, "gap_rates": [0.6039735099337749, 0.47549668874172185, 0.4556291390728477, 0.45165562913907287, 0.44900662251655626, 0.4463576158940397, 0.4463576158940397, 0.4463576158940397, 0.4463576158940397, 0.4463576158940397, 0.44503311258278144, 0.44503311258278144, 0.44503311258278144, 0.5218543046357615, 0.5271523178807948, 0.4423841059602649, 0.44370860927152317, 0.43973509933774835, 0.447682119205298, 0.4370860927152318, 0.8874172185430463, 0.9112582781456954, 0.8198675496688742, 0.42649006622516555, 0.4251655629139073, 0.4251655629139073, 0.4251655629139073, 0.4251655629139073, 0.423841059602649, 0.4251655629139073, 0.4251655629139073, 0.4251655629139073, 0.4251655629139073, 0.4251655629139073, 0.4251655629139073, 0.4251655629139073, 0.4251655629139073, 0.42649006622516555, 0.42649006622516555, 0.4304635761589404, 0.9470198675496688, 0.9470198675496688, 0.590728476821192, 0.856953642384106, 0.5271523178807948, 0.49403973509933774, 0.4847682119205298, 0.47152317880794703, 0.4728476821192053, 0.48079470198675495, 0.49403973509933774, 0.4649006622516556, 0.44900662251655626, 0.43178807947019865, 0.9311258278145695, 0.9430463576158941, 0.9390728476821192, 0.9205298013245033, 0.4423841059602649, 0.4278145695364238, 0.4304635761589404, 0.4278145695364238, 0.423841059602649, 0.423841059602649, 0.423841059602649, 0.4251655629139073, 0.423841059602649, 0.423841059602649, 0.423841059602649, 0.423841059602649, 0.423841059602649, 0.43178807947019865, 0.46357615894039733, 0.495364238410596, 0.5509933774834437, 0.5748344370860927, 0.5933774834437087, 0.6052980132450331, 0.6476821192052981, 0.6754966887417219, 0.6887417218543046, 0.8198675496688742, 0.8966887417218543, 0.9152317880794701, 0.9205298013245033, 0.9271523178807947, 0.9364238410596026, 0.9456953642384106, 0.9483443708609272, 0.9483443708609272, 0.9470198675496688, 0.9417218543046357, 0.9311258278145695, 0.9245033112582781, 0.919205298013245, 0.9139072847682119, 0.8807947019867549, 0.8132450331125828, 0.7324503311258278, 0.8119205298013245, 0.8105960264900662, 0.8079470198675497, 0.8291390728476821, 0.8198675496688742, 0.8079470198675497, 0.7986754966887417, 0.8052980132450331, 0.7642384105960265, 0.9245033112582781, 0.9364238410596026, 0.9443708609271523, 0.9496688741721855, 0.9390728476821192, 0.9298013245033112, 0.9218543046357616, 0.7748344370860927, 0.7960264900662252, 0.8013245033112583, 0.7947019867549668, 0.7867549668874172, 0.785430463576159, 0.7894039735099337, 0.7907284768211921, 0.7880794701986755, 0.7907284768211921, 0.7960264900662252, 0.8039735099337748, 0.785430463576159, 0.8688741721854305, 0.8834437086092716, 0.8940397350993378, 0.9019867549668874, 0.9178807947019868, 0.9350993377483444, 0.9456953642384106, 0.9430463576158941, 0.9271523178807947, 0.9125827814569536, 0.9006622516556292, 0.8900662251655629, 0.8754966887417218, 0.8609271523178808, 0.8172185430463577, 0.8900662251655629, 0.8807947019867549, 0.8794701986754967, 0.8754966887417218, 0.8701986754966887, 0.8649006622516556, 0.8675496688741722, 0.866225165562914, 0.8701986754966887, 0.866225165562914, 0.866225165562914, 0.8609271523178808, 0.8596026490066225, 0.8582781456953642, 0.8635761589403973, 0.7456953642384105, 0.8092715231788079, 0.8119205298013245, 0.8145695364238411, 0.8198675496688742, 0.8211920529801324, 0.823841059602649, 0.8278145695364238, 0.8291390728476821, 0.8304635761589404, 0.8370860927152318, 0.83841059602649, 0.83841059602649, 0.8423841059602649, 0.8463576158940397, 0.8503311258278146, 0.8503311258278146, 0.8516556291390729, 0.8529801324503311, 0.8556291390728477, 0.856953642384106, 0.8622516556291391, 0.8649006622516556, 0.8701986754966887, 0.8741721854304636, 0.8768211920529801, 0.8821192052980132, 0.8860927152317881, 0.8900662251655629, 0.8927152317880794, 0.8966887417218543, 0.9006622516556292, 0.904635761589404, 0.9086092715231788, 0.9165562913907285, 0.919205298013245, 0.9258278145695364, 0.9311258278145695, 0.9350993377483444, 0.937748344370861, 0.9417218543046357, 0.9496688741721855, 0.9470198675496688, 0.9390728476821192, 0.9364238410596026, 0.9324503311258279, 0.9298013245033112, 0.9245033112582781, 0.9165562913907285, 0.9139072847682119, 0.9059602649006623, 0.9033112582781457, 0.9006622516556292, 0.8940397350993378, 0.8900662251655629, 0.8887417218543047, 0.8860927152317881, 0.8794701986754967, 0.8754966887417218, 0.8728476821192053, 0.8688741721854305, 0.8649006622516556, 0.856953642384106, 0.8556291390728477, 0.8556291390728477, 0.8529801324503311, 0.8516556291390729, 0.8503311258278146, 0.847682119205298, 0.8437086092715231, 0.8423841059602649, 0.83841059602649, 0.83841059602649, 0.8317880794701987, 0.8291390728476821, 0.8278145695364238, 0.8251655629139073, 0.8225165562913908, 0.8198675496688742, 0.8172185430463577, 0.8119205298013245, 0.8092715231788079, 0.8066225165562914, 0.7245033112582782, 0.7192052980132451, 0.6966887417218544, 0.6728476821192053, 0.6596026490066225, 0.614569536423841, 0.5774834437086093, 0.5456953642384106, 0.5112582781456954, 0.4781456953642384, 0.4370860927152318, 0.40927152317880794, 0.3827814569536424, 0.376158940397351, 0.37350993377483444, 0.3695364238410596, 0.3708609271523179, 0.37218543046357616, 0.3708609271523179, 0.3708609271523179, 0.3708609271523179, 0.3708609271523179, 0.3801324503311258, 0.37350993377483444, 0.37748344370860926, 0.38145695364238413, 0.4105960264900662, 0.3880794701986755, 0.38675496688741723, 0.39470198675496687, 0.46225165562913906, 0.4503311258278146, 0.9470198675496688, 0.36821192052980134, 0.36423841059602646, 0.3615894039735099, 0.36026490066225164, 0.36026490066225164, 0.36026490066225164, 0.36026490066225164, 0.35894039735099337, 0.35894039735099337, 0.35894039735099337, 0.35894039735099337, 0.35894039735099337, 0.36026490066225164, 0.36026490066225164, 0.35894039735099337, 0.36026490066225164, 0.3629139072847682, 0.3615894039735099, 0.3629139072847682, 0.3629139072847682, 0.36423841059602646, 0.3615894039735099, 0.36026490066225164, 0.36026490066225164, 0.36026490066225164, 0.36026490066225164, 0.3615894039735099, 0.36821192052980134, 0.37218543046357616, 0.7867549668874172, 0.8105960264900662, 0.833112582781457, 0.8688741721854305, 0.9112582781456954, 0.937748344370861, 0.9430463576158941, 0.9231788079470199, 0.8993377483443709, 0.856953642384106, 0.8264900662251655, 0.7960264900662252, 0.7695364238410596, 0.7403973509933774, 0.671523178807947, 0.5735099337748344, 0.5509933774834437, 0.543046357615894, 0.5245033112582781, 0.5165562913907285, 0.39470198675496687, 0.39072847682119205, 0.3841059602649007, 0.38145695364238413, 0.3801324503311258, 0.3827814569536424, 0.3827814569536424, 0.3827814569536424, 0.3841059602649007, 0.3827814569536424, 0.3827814569536424, 0.38543046357615895, 0.38675496688741723, 0.38543046357615895, 0.38543046357615895, 0.3880794701986755, 0.3894039735099338, 0.39072847682119205, 0.39470198675496687, 0.39602649006622515, 0.39470198675496687, 0.39867549668874175, 0.4, 0.4, 0.41324503311258276, 0.4013245033112583, 0.40794701986754967, 0.4105960264900662, 0.40927152317880794, 0.40927152317880794, 0.4105960264900662, 0.4105960264900662, 0.4119205298013245, 0.41456953642384103, 0.423841059602649, 0.4251655629139073, 0.4278145695364238, 0.4291390728476821, 0.4291390728476821, 0.4291390728476821, 0.44503311258278144, 0.44370860927152317, 0.4543046357615894, 0.45827814569536424, 0.46357615894039733, 0.47152317880794703, 0.686092715231788], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Viral_helicase1.gap.json b/pfam_gap_rates/Viral_helicase1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..9b3f59f8b4ce20aee0ea10235780770c8039c657
--- /dev/null
+++ b/pfam_gap_rates/Viral_helicase1.gap.json
@@ -0,0 +1 @@
+{"family": "Viral_helicase1", "n_seqs": 145, "length": 329, "gap_rates": [0.8758620689655172, 0.6758620689655173, 0.5724137931034483, 0.5517241379310345, 0.5103448275862069, 0.496551724137931, 0.45517241379310347, 0.45517241379310347, 0.45517241379310347, 0.45517241379310347, 0.45517241379310347, 0.45517241379310347, 0.45517241379310347, 0.45517241379310347, 0.45517241379310347, 0.45517241379310347, 0.45517241379310347, 0.45517241379310347, 0.45517241379310347, 0.46206896551724136, 0.45517241379310347, 0.5793103448275863, 0.6689655172413793, 0.8, 0.903448275862069, 0.9448275862068966, 0.9310344827586207, 0.8758620689655172, 0.7862068965517242, 0.593103448275862, 0.5793103448275863, 0.6137931034482759, 0.6206896551724138, 0.5862068965517241, 0.5655172413793104, 0.5379310344827586, 0.503448275862069, 0.5103448275862069, 0.5724137931034483, 0.503448275862069, 0.496551724137931, 0.503448275862069, 0.496551724137931, 0.47586206896551725, 0.47586206896551725, 0.47586206896551725, 0.46206896551724136, 0.6206896551724138, 0.7448275862068966, 0.8206896551724138, 0.8758620689655172, 0.8827586206896552, 0.896551724137931, 0.903448275862069, 0.9310344827586207, 0.9448275862068966, 0.9448275862068966, 0.9448275862068966, 0.9448275862068966, 0.9448275862068966, 0.9448275862068966, 0.9379310344827586, 0.9241379310344827, 0.896551724137931, 0.896551724137931, 0.8827586206896552, 0.8482758620689655, 0.7724137931034483, 0.7241379310344828, 0.593103448275862, 0.45517241379310347, 0.4482758620689655, 0.45517241379310347, 0.4413793103448276, 0.4413793103448276, 0.4413793103448276, 0.4482758620689655, 0.43448275862068964, 0.42758620689655175, 0.42758620689655175, 0.4068965517241379, 0.4068965517241379, 0.41379310344827586, 0.4, 0.4068965517241379, 0.3931034482758621, 0.38620689655172413, 0.38620689655172413, 0.38620689655172413, 0.3931034482758621, 0.4827586206896552, 0.8689655172413793, 0.6482758620689655, 0.4827586206896552, 0.2689655172413793, 0.25517241379310346, 0.2413793103448276, 0.2413793103448276, 0.2413793103448276, 0.2413793103448276, 0.2413793103448276, 0.2413793103448276, 0.2482758620689655, 0.2482758620689655, 0.2482758620689655, 0.2482758620689655, 0.2482758620689655, 0.3310344827586207, 0.38620689655172413, 0.3448275862068966, 0.2896551724137931, 0.2827586206896552, 0.2827586206896552, 0.8620689655172413, 0.296551724137931, 0.2896551724137931, 0.2896551724137931, 0.2896551724137931, 0.25517241379310346, 0.25517241379310346, 0.25517241379310346, 0.2689655172413793, 0.2482758620689655, 0.2482758620689655, 0.2482758620689655, 0.2482758620689655, 0.2482758620689655, 0.2620689655172414, 0.25517241379310346, 0.25517241379310346, 0.25517241379310346, 0.25517241379310346, 0.2620689655172414, 0.2896551724137931, 0.2896551724137931, 0.27586206896551724, 0.32413793103448274, 0.3931034482758621, 0.3793103448275862, 0.33793103448275863, 0.4206896551724138, 0.3931034482758621, 0.296551724137931, 0.2827586206896552, 0.2896551724137931, 0.2896551724137931, 0.296551724137931, 0.2827586206896552, 0.296551724137931, 0.296551724137931, 0.2689655172413793, 0.7103448275862069, 0.8551724137931035, 0.9310344827586207, 0.9448275862068966, 0.9241379310344827, 0.8068965517241379, 0.7103448275862069, 0.3103448275862069, 0.2827586206896552, 0.2827586206896552, 0.2827586206896552, 0.2827586206896552, 0.2620689655172414, 0.2482758620689655, 0.2620689655172414, 0.25517241379310346, 0.25517241379310346, 0.25517241379310346, 0.2482758620689655, 0.2482758620689655, 0.2482758620689655, 0.2482758620689655, 0.2482758620689655, 0.2482758620689655, 0.2482758620689655, 0.25517241379310346, 0.2620689655172414, 0.2620689655172414, 0.2620689655172414, 0.25517241379310346, 0.5310344827586206, 0.6206896551724138, 0.7034482758620689, 0.7793103448275862, 0.8068965517241379, 0.8551724137931035, 0.8689655172413793, 0.9241379310344827, 0.9379310344827586, 0.9379310344827586, 0.903448275862069, 0.8620689655172413, 0.8275862068965517, 0.7862068965517242, 0.7310344827586207, 0.6551724137931034, 0.5724137931034483, 0.5310344827586206, 0.4896551724137931, 0.41379310344827586, 0.3931034482758621, 0.3310344827586207, 0.31724137931034485, 0.2827586206896552, 0.2689655172413793, 0.2689655172413793, 0.2689655172413793, 0.2896551724137931, 0.27586206896551724, 0.2689655172413793, 0.25517241379310346, 0.7586206896551724, 0.896551724137931, 0.9448275862068966, 0.8137931034482758, 0.6482758620689655, 0.42758620689655175, 0.45517241379310347, 0.25517241379310346, 0.2482758620689655, 0.2482758620689655, 0.2620689655172414, 0.2896551724137931, 0.2896551724137931, 0.3103448275862069, 0.7862068965517242, 0.4689655172413793, 0.7310344827586207, 0.9448275862068966, 0.8827586206896552, 0.5310344827586206, 0.41379310344827586, 0.2482758620689655, 0.2482758620689655, 0.2413793103448276, 0.22758620689655173, 0.22758620689655173, 0.2206896551724138, 0.2206896551724138, 0.21379310344827587, 0.2, 0.2, 0.18620689655172415, 0.1793103448275862, 0.1793103448275862, 0.21379310344827587, 0.15172413793103448, 0.14482758620689656, 0.15862068965517243, 0.1724137931034483, 0.496551724137931, 0.5379310344827586, 0.6137931034482759, 0.696551724137931, 0.7655172413793103, 0.7724137931034483, 0.8068965517241379, 0.8206896551724138, 0.8827586206896552, 0.9172413793103448, 0.9241379310344827, 0.9379310344827586, 0.9241379310344827, 0.9241379310344827, 0.903448275862069, 0.8758620689655172, 0.8068965517241379, 0.7862068965517242, 0.7724137931034483, 0.7379310344827587, 0.6413793103448275, 0.5793103448275863, 0.5172413793103449, 0.45517241379310347, 0.3448275862068966, 0.11724137931034483, 0.09655172413793103, 0.0896551724137931, 0.0896551724137931, 0.0896551724137931, 0.0896551724137931, 0.0896551724137931, 0.0896551724137931, 0.0896551724137931, 0.0896551724137931, 0.07586206896551724, 0.07586206896551724, 0.07586206896551724, 0.07586206896551724, 0.07586206896551724, 0.07586206896551724, 0.07586206896551724, 0.08275862068965517, 0.0896551724137931, 0.0896551724137931, 0.1793103448275862, 0.15172413793103448, 0.18620689655172415, 0.2, 0.2620689655172414, 0.2620689655172414, 0.496551724137931, 0.38620689655172413, 0.42758620689655175, 0.9172413793103448, 0.9241379310344827, 0.896551724137931, 0.5241379310344828, 0.25517241379310346, 0.10344827586206896, 0.09655172413793103, 0.09655172413793103, 0.09655172413793103, 0.09655172413793103, 0.10344827586206896, 0.10344827586206896, 0.10344827586206896, 0.10344827586206896, 0.10344827586206896, 0.10344827586206896, 0.10344827586206896, 0.10344827586206896, 0.10344827586206896, 0.1103448275862069, 0.1310344827586207, 0.2, 0.35172413793103446, 0.7172413793103448], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Vps39_2.gap.json b/pfam_gap_rates/Vps39_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c916e645e7ae2a70acab8582b41c84be6a621298
--- /dev/null
+++ b/pfam_gap_rates/Vps39_2.gap.json
@@ -0,0 +1 @@
+{"family": "Vps39_2", "n_seqs": 587, "length": 119, "gap_rates": [0.4940374787052811, 0.35093696763202725, 0.2061328790459966, 0.16013628620102216, 0.14821124361158433, 0.13798977853492334, 0.13798977853492334, 0.10391822827938671, 0.06473594548551959, 0.056218057921635436, 0.04258943781942078, 0.03577512776831346, 0.03236797274275979, 0.027257240204429302, 0.02385008517887564, 0.017035775127768313, 0.013628620102214651, 0.01192504258943782, 0.01192504258943782, 0.01192504258943782, 0.01192504258943782, 0.017035775127768313, 0.010221465076660987, 0.010221465076660987, 0.008517887563884156, 0.008517887563884156, 0.008517887563884156, 0.008517887563884156, 0.008517887563884156, 0.008517887563884156, 0.008517887563884156, 0.008517887563884156, 0.008517887563884156, 0.008517887563884156, 0.008517887563884156, 0.008517887563884156, 0.008517887563884156, 0.018739352640545145, 0.022146507666098807, 0.018739352640545145, 0.03236797274275979, 0.03236797274275979, 0.04770017035775128, 0.027257240204429302, 0.02385008517887564, 0.010221465076660987, 0.010221465076660987, 0.010221465076660987, 0.01192504258943782, 0.01192504258943782, 0.01192504258943782, 0.01192504258943782, 0.01192504258943782, 0.010221465076660987, 0.010221465076660987, 0.008517887563884156, 0.01192504258943782, 0.010221465076660987, 0.01192504258943782, 0.01192504258943782, 0.015332197614991482, 0.017035775127768313, 0.02555366269165247, 0.030664395229982964, 0.03236797274275979, 0.04599659284497445, 0.8943781942078365, 0.9028960817717206, 0.9045996592844975, 0.9114139693356048, 0.9250425894378195, 0.9063032367972743, 0.9045996592844975, 0.9028960817717206, 0.8807495741056218, 0.06984667802385008, 0.10051107325383304, 0.1141396933560477, 0.12265758091993186, 0.13798977853492334, 0.14991482112436116, 0.15332197614991483, 0.15502555366269166, 0.15502555366269166, 0.16013628620102216, 0.16524701873935263, 0.1686541737649063, 0.17717206132879046, 0.17546848381601363, 0.1788756388415673, 0.18057921635434412, 0.1839863713798978, 0.18228279386712096, 0.18228279386712096, 0.18739352640545145, 0.1890971039182283, 0.19420783645655879, 0.19931856899488926, 0.20783645655877342, 0.8875638841567292, 0.21124361158432708, 0.20954003407155025, 0.20954003407155025, 0.21294718909710392, 0.21465076660988075, 0.21635434412265758, 0.21805792163543442, 0.21805792163543442, 0.22998296422487224, 0.8909710391822828, 0.23339011925042588, 0.22998296422487224, 0.23339011925042588, 0.23339011925042588, 0.23679727427597955, 0.23850085178875638, 0.252129471890971, 0.28620102214650767, 0.48211243611584326], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Vps52.gap.json b/pfam_gap_rates/Vps52.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..0ce4ef0242e37d63ded1510370169fb99712b2de
--- /dev/null
+++ b/pfam_gap_rates/Vps52.gap.json
@@ -0,0 +1 @@
+{"family": "Vps52", "n_seqs": 481, "length": 566, "gap_rates": [0.9272349272349273, 0.8607068607068608, 0.7484407484407485, 0.6798336798336798, 0.6507276507276507, 0.5987525987525988, 0.5821205821205822, 0.5696465696465697, 0.5592515592515592, 0.5509355509355509, 0.5384615384615384, 0.5343035343035343, 0.5114345114345115, 0.47401247401247404, 0.4386694386694387, 0.4282744282744283, 0.42203742203742206, 0.41995841995842, 0.4158004158004158, 0.41372141372141374, 0.41164241164241167, 0.40332640332640335, 0.40124740124740127, 0.40124740124740127, 0.40124740124740127, 0.39501039501039503, 0.3908523908523909, 0.38461538461538464, 0.3762993762993763, 0.367983367983368, 0.3596673596673597, 0.35550935550935553, 0.34303534303534305, 0.34511434511434513, 0.34511434511434513, 0.34303534303534305, 0.34303534303534305, 0.34303534303534305, 0.34303534303534305, 0.34303534303534305, 0.340956340956341, 0.34303534303534305, 0.34303534303534305, 0.34303534303534305, 0.34303534303534305, 0.34303534303534305, 0.34303534303534305, 0.34303534303534305, 0.34303534303534305, 0.34303534303534305, 0.34303534303534305, 0.34303534303534305, 0.34303534303534305, 0.34303534303534305, 0.34303534303534305, 0.34511434511434513, 0.34511434511434513, 0.34511434511434513, 0.34511434511434513, 0.34511434511434513, 0.340956340956341, 0.340956340956341, 0.34303534303534305, 0.34303534303534305, 0.34303534303534305, 0.34303534303534305, 0.34303534303534305, 0.34303534303534305, 0.34303534303534305, 0.340956340956341, 0.340956340956341, 0.34303534303534305, 0.340956340956341, 0.3388773388773389, 0.3367983367983368, 0.3367983367983368, 0.33471933471933474, 0.3367983367983368, 0.3367983367983368, 0.3367983367983368, 0.3367983367983368, 0.33471933471933474, 0.33471933471933474, 0.33471933471933474, 0.33471933471933474, 0.33471933471933474, 0.33471933471933474, 0.33471933471933474, 0.33264033264033266, 0.33264033264033266, 0.33471933471933474, 0.33471933471933474, 0.33264033264033266, 0.33264033264033266, 0.33264033264033266, 0.3201663201663202, 0.316008316008316, 0.316008316008316, 0.32224532224532226, 0.9251559251559252, 0.9376299376299376, 0.920997920997921, 0.33471933471933474, 0.3492723492723493, 0.32224532224532226, 0.3284823284823285, 0.34511434511434513, 0.3492723492723493, 0.3264033264033264, 0.32224532224532226, 0.32432432432432434, 0.316008316008316, 0.3180873180873181, 0.32432432432432434, 0.32432432432432434, 0.32432432432432434, 0.32224532224532226, 0.32224532224532226, 0.3284823284823285, 0.34303534303534305, 0.3575883575883576, 0.3575883575883576, 0.36174636174636177, 0.9064449064449065, 0.9293139293139293, 0.9480249480249481, 0.9397089397089398, 0.9251559251559252, 0.8607068607068608, 0.3388773388773389, 0.33264033264033266, 0.32432432432432434, 0.316008316008316, 0.3097713097713098, 0.3076923076923077, 0.31185031185031187, 0.3097713097713098, 0.3097713097713098, 0.30561330561330563, 0.30353430353430355, 0.30353430353430355, 0.3097713097713098, 0.3076923076923077, 0.3076923076923077, 0.3097713097713098, 0.3097713097713098, 0.3097713097713098, 0.30561330561330563, 0.30353430353430355, 0.2993762993762994, 0.30353430353430355, 0.30561330561330563, 0.30561330561330563, 0.3076923076923077, 0.3076923076923077, 0.3076923076923077, 0.3076923076923077, 0.3076923076923077, 0.3076923076923077, 0.3076923076923077, 0.3076923076923077, 0.3076923076923077, 0.3076923076923077, 0.3076923076923077, 0.3076923076923077, 0.31185031185031187, 0.3076923076923077, 0.31392931392931395, 0.3097713097713098, 0.8835758835758836, 0.31185031185031187, 0.3076923076923077, 0.30561330561330563, 0.30561330561330563, 0.30353430353430355, 0.30353430353430355, 0.30145530145530147, 0.30353430353430355, 0.6403326403326404, 0.30561330561330563, 0.30145530145530147, 0.30145530145530147, 0.30145530145530147, 0.2993762993762994, 0.2972972972972973, 0.2972972972972973, 0.2993762993762994, 0.2993762993762994, 0.2993762993762994, 0.2993762993762994, 0.2993762993762994, 0.2993762993762994, 0.30353430353430355, 0.3097713097713098, 0.31392931392931395, 0.30145530145530147, 0.30145530145530147, 0.30145530145530147, 0.30561330561330563, 0.30145530145530147, 0.30145530145530147, 0.2993762993762994, 0.30145530145530147, 0.30353430353430355, 0.30353430353430355, 0.30561330561330563, 0.30353430353430355, 0.30353430353430355, 0.30353430353430355, 0.2993762993762994, 0.30145530145530147, 0.2993762993762994, 0.2993762993762994, 0.2993762993762994, 0.2993762993762994, 0.2993762993762994, 0.2993762993762994, 0.2993762993762994, 0.30145530145530147, 0.30145530145530147, 0.30145530145530147, 0.30145530145530147, 0.30145530145530147, 0.30353430353430355, 0.30561330561330563, 0.3097713097713098, 0.3097713097713098, 0.31185031185031187, 0.3201663201663202, 0.32224532224532226, 0.3284823284823285, 0.3305613305613306, 0.33471933471933474, 0.33471933471933474, 0.3388773388773389, 0.34511434511434513, 0.6652806652806653, 0.39501039501039503, 0.3908523908523909, 0.9459459459459459, 0.40332640332640335, 0.39293139293139295, 0.3970893970893971, 0.3908523908523909, 0.3908523908523909, 0.3908523908523909, 0.3908523908523909, 0.3866943866943867, 0.8378378378378378, 0.9043659043659044, 0.9480249480249481, 0.9334719334719335, 0.8835758835758836, 0.7733887733887734, 0.3804573804573805, 0.3970893970893971, 0.3991683991683992, 0.3991683991683992, 0.38461538461538464, 0.8731808731808732, 0.9002079002079002, 0.9106029106029107, 0.9147609147609148, 0.9168399168399168, 0.9251559251559252, 0.9376299376299376, 0.9438669438669439, 0.9334719334719335, 0.9230769230769231, 0.9168399168399168, 0.9126819126819127, 0.9085239085239085, 0.8877338877338877, 0.814968814968815, 0.3783783783783784, 0.49064449064449067, 0.3991683991683992, 0.3887733887733888, 0.3866943866943867, 0.37214137214137216, 0.3700623700623701, 0.36382536382536385, 0.36382536382536385, 0.3659043659043659, 0.3659043659043659, 0.3596673596673597, 0.3575883575883576, 0.3596673596673597, 0.3596673596673597, 0.3492723492723493, 0.3471933471933472, 0.3492723492723493, 0.340956340956341, 0.34511434511434513, 0.34303534303534305, 0.34511434511434513, 0.9126819126819127, 0.7234927234927235, 0.36382536382536385, 0.34303534303534305, 0.3367983367983368, 0.33264033264033266, 0.3305613305613306, 0.32432432432432434, 0.3284823284823285, 0.3264033264033264, 0.32224532224532226, 0.316008316008316, 0.316008316008316, 0.32224532224532226, 0.32224532224532226, 0.32224532224532226, 0.32224532224532226, 0.38253638253638256, 0.36382536382536385, 0.32432432432432434, 0.3201663201663202, 0.32224532224532226, 0.3201663201663202, 0.32224532224532226, 0.3201663201663202, 0.3201663201663202, 0.3201663201663202, 0.3201663201663202, 0.3201663201663202, 0.3201663201663202, 0.32224532224532226, 0.32224532224532226, 0.3180873180873181, 0.3180873180873181, 0.316008316008316, 0.316008316008316, 0.316008316008316, 0.316008316008316, 0.3180873180873181, 0.3180873180873181, 0.3180873180873181, 0.316008316008316, 0.3180873180873181, 0.3180873180873181, 0.316008316008316, 0.316008316008316, 0.32224532224532226, 0.32224532224532226, 0.32432432432432434, 0.3201663201663202, 0.33471933471933474, 0.58004158004158, 0.5446985446985447, 0.5343035343035343, 0.49480249480249483, 0.46361746361746364, 0.3575883575883576, 0.35135135135135137, 0.34511434511434513, 0.8711018711018711, 0.8773388773388774, 0.8565488565488566, 0.35343035343035345, 0.35550935550935553, 0.35343035343035345, 0.35343035343035345, 0.34511434511434513, 0.34511434511434513, 0.3471933471933472, 0.3471933471933472, 0.3471933471933472, 0.3492723492723493, 0.3471933471933472, 0.34511434511434513, 0.34511434511434513, 0.34511434511434513, 0.34511434511434513, 0.34303534303534305, 0.34303534303534305, 0.340956340956341, 0.340956340956341, 0.3471933471933472, 0.35135135135135137, 0.35343035343035345, 0.3492723492723493, 0.34303534303534305, 0.3388773388773389, 0.3388773388773389, 0.3388773388773389, 0.3388773388773389, 0.3388773388773389, 0.340956340956341, 0.34303534303534305, 0.3388773388773389, 0.34511434511434513, 0.3388773388773389, 0.3388773388773389, 0.3388773388773389, 0.3388773388773389, 0.3388773388773389, 0.33471933471933474, 0.3388773388773389, 0.3388773388773389, 0.34511434511434513, 0.340956340956341, 0.34303534303534305, 0.340956340956341, 0.3388773388773389, 0.340956340956341, 0.34303534303534305, 0.340956340956341, 0.3388773388773389, 0.3367983367983368, 0.3388773388773389, 0.340956340956341, 0.34303534303534305, 0.34303534303534305, 0.34511434511434513, 0.34303534303534305, 0.340956340956341, 0.340956340956341, 0.340956340956341, 0.340956340956341, 0.3388773388773389, 0.3388773388773389, 0.3388773388773389, 0.3367983367983368, 0.3388773388773389, 0.3388773388773389, 0.3388773388773389, 0.3388773388773389, 0.3388773388773389, 0.3388773388773389, 0.3388773388773389, 0.3388773388773389, 0.3388773388773389, 0.340956340956341, 0.340956340956341, 0.3388773388773389, 0.3471933471933472, 0.3492723492723493, 0.35135135135135137, 0.35343035343035345, 0.35550935550935553, 0.35550935550935553, 0.3596673596673597, 0.36174636174636177, 0.3659043659043659, 0.4178794178794179, 0.6964656964656964, 0.7318087318087318, 0.760914760914761, 0.7962577962577962, 0.8627858627858628, 0.9147609147609148, 0.9334719334719335, 0.9272349272349273, 0.9043659043659044, 0.8336798336798337, 0.7796257796257796, 0.7401247401247402, 0.7172557172557172, 0.6486486486486487, 0.3659043659043659, 0.3575883575883576, 0.35550935550935553, 0.36174636174636177, 0.36174636174636177, 0.3575883575883576, 0.35135135135135137, 0.35135135135135137, 0.35135135135135137, 0.35343035343035345, 0.35550935550935553, 0.35550935550935553, 0.35550935550935553, 0.35550935550935553, 0.35550935550935553, 0.35550935550935553, 0.35550935550935553, 0.3575883575883576, 0.3596673596673597, 0.3575883575883576, 0.3596673596673597, 0.3575883575883576, 0.3659043659043659, 0.37214137214137216, 0.37422037422037424, 0.37422037422037424, 0.37422037422037424, 0.3762993762993763, 0.3783783783783784, 0.3783783783783784, 0.8586278586278586, 0.9230769230769231, 0.9417879417879418, 0.9459459459459459, 0.9293139293139293, 0.8794178794178794, 0.7214137214137214, 0.37422037422037424, 0.3762993762993763, 0.37422037422037424, 0.37214137214137216, 0.37214137214137216, 0.37214137214137216, 0.37214137214137216, 0.37214137214137216, 0.37214137214137216, 0.37214137214137216, 0.37214137214137216, 0.37422037422037424, 0.3762993762993763, 0.3762993762993763, 0.3783783783783784, 0.3783783783783784, 0.3783783783783784, 0.3783783783783784, 0.3804573804573805, 0.38461538461538464, 0.3866943866943867, 0.3866943866943867, 0.3866943866943867, 0.3908523908523909, 0.3866943866943867, 0.3887733887733888, 0.3908523908523909, 0.40332640332640335, 0.40124740124740127, 0.39501039501039503, 0.39501039501039503, 0.39501039501039503, 0.3970893970893971, 0.3970893970893971, 0.3970893970893971, 0.3991683991683992, 0.3970893970893971, 0.40124740124740127, 0.40124740124740127, 0.40124740124740127, 0.40332640332640335, 0.4074844074844075, 0.4095634095634096, 0.41372141372141374, 0.41995841995842, 0.4386694386694387, 0.4490644490644491, 0.4553014553014553, 0.47401247401247404, 0.49480249480249483, 0.5072765072765073, 0.5218295218295218, 0.525987525987526, 0.5343035343035343, 0.5384615384615384, 0.5467775467775468, 0.5488565488565489, 0.5592515592515592, 0.5717255717255717, 0.5717255717255717, 0.5821205821205822, 0.5966735966735967, 0.6216216216216216, 0.6382536382536382, 0.6694386694386695, 0.6964656964656964, 0.7110187110187111, 0.735966735966736, 0.7505197505197505, 0.8627858627858628], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/WASH_WAHD.gap.json b/pfam_gap_rates/WASH_WAHD.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..4c6352aae3efdeb5031c04598423afeae35c65f2
--- /dev/null
+++ b/pfam_gap_rates/WASH_WAHD.gap.json
@@ -0,0 +1 @@
+{"family": "WASH_WAHD", "n_seqs": 120, "length": 344, "gap_rates": [0.55, 0.4583333333333333, 0.45, 0.3333333333333333, 0.2833333333333333, 0.275, 0.26666666666666666, 0.26666666666666666, 0.25833333333333336, 0.25833333333333336, 0.25833333333333336, 0.25833333333333336, 0.25833333333333336, 0.25833333333333336, 0.25, 0.23333333333333334, 0.21666666666666667, 0.19166666666666668, 0.19166666666666668, 0.175, 0.175, 0.15833333333333333, 0.15833333333333333, 0.15833333333333333, 0.15, 0.15, 0.14166666666666666, 0.14166666666666666, 0.14166666666666666, 0.14166666666666666, 0.14166666666666666, 0.14166666666666666, 0.14166666666666666, 0.14166666666666666, 0.14166666666666666, 0.14166666666666666, 0.125, 0.125, 0.13333333333333333, 0.13333333333333333, 0.125, 0.11666666666666667, 0.11666666666666667, 0.10833333333333334, 0.10833333333333334, 0.11666666666666667, 0.11666666666666667, 0.10833333333333334, 0.10833333333333334, 0.10833333333333334, 0.10833333333333334, 0.10833333333333334, 0.10833333333333334, 0.10833333333333334, 0.10833333333333334, 0.10833333333333334, 0.10833333333333334, 0.10833333333333334, 0.11666666666666667, 0.11666666666666667, 0.11666666666666667, 0.11666666666666667, 0.125, 0.125, 0.125, 0.125, 0.125, 0.125, 0.125, 0.13333333333333333, 0.9416666666666667, 0.9333333333333333, 0.14166666666666666, 0.14166666666666666, 0.125, 0.125, 0.125, 0.125, 0.125, 0.13333333333333333, 0.13333333333333333, 0.15, 0.15, 0.15, 0.15, 0.15, 0.9166666666666666, 0.15833333333333333, 0.175, 0.175, 0.18333333333333332, 0.19166666666666668, 0.18333333333333332, 0.19166666666666668, 0.2, 0.20833333333333334, 0.2, 0.2, 0.7583333333333333, 0.8083333333333333, 0.85, 0.8583333333333333, 0.8833333333333333, 0.8916666666666667, 0.9083333333333333, 0.925, 0.9416666666666667, 0.9166666666666666, 0.8916666666666667, 0.8916666666666667, 0.875, 0.85, 0.8333333333333334, 0.7833333333333333, 0.75, 0.5583333333333333, 0.35, 0.2916666666666667, 0.2833333333333333, 0.24166666666666667, 0.23333333333333334, 0.23333333333333334, 0.24166666666666667, 0.31666666666666665, 0.30833333333333335, 0.25, 0.25833333333333336, 0.25, 0.25833333333333336, 0.24166666666666667, 0.23333333333333334, 0.23333333333333334, 0.23333333333333334, 0.24166666666666667, 0.24166666666666667, 0.24166666666666667, 0.275, 0.425, 0.925, 0.925, 0.9416666666666667, 0.9416666666666667, 0.9416666666666667, 0.9416666666666667, 0.9416666666666667, 0.9416666666666667, 0.9416666666666667, 0.9416666666666667, 0.9333333333333333, 0.925, 0.9166666666666666, 0.31666666666666665, 0.2916666666666667, 0.24166666666666667, 0.225, 0.225, 0.225, 0.23333333333333334, 0.225, 0.21666666666666667, 0.21666666666666667, 0.225, 0.9333333333333333, 0.95, 0.9333333333333333, 0.9333333333333333, 0.225, 0.21666666666666667, 0.2833333333333333, 0.275, 0.23333333333333334, 0.24166666666666667, 0.24166666666666667, 0.85, 0.25, 0.25, 0.3416666666666667, 0.31666666666666665, 0.26666666666666666, 0.24166666666666667, 0.25833333333333336, 0.23333333333333334, 0.23333333333333334, 0.225, 0.225, 0.8666666666666667, 0.9083333333333333, 0.9166666666666666, 0.9333333333333333, 0.9166666666666666, 0.9, 0.8416666666666667, 0.20833333333333334, 0.20833333333333334, 0.20833333333333334, 0.19166666666666668, 0.18333333333333332, 0.175, 0.175, 0.18333333333333332, 0.175, 0.16666666666666666, 0.16666666666666666, 0.16666666666666666, 0.16666666666666666, 0.16666666666666666, 0.16666666666666666, 0.175, 0.16666666666666666, 0.16666666666666666, 0.16666666666666666, 0.16666666666666666, 0.16666666666666666, 0.15833333333333333, 0.9333333333333333, 0.9333333333333333, 0.15833333333333333, 0.15833333333333333, 0.15833333333333333, 0.15833333333333333, 0.15833333333333333, 0.30833333333333335, 0.3, 0.225, 0.20833333333333334, 0.18333333333333332, 0.18333333333333332, 0.18333333333333332, 0.18333333333333332, 0.3416666666666667, 0.24166666666666667, 0.23333333333333334, 0.21666666666666667, 0.20833333333333334, 0.2, 0.19166666666666668, 0.24166666666666667, 0.25833333333333336, 0.25833333333333336, 0.25833333333333336, 0.2916666666666667, 0.25, 0.3333333333333333, 0.2, 0.175, 0.15833333333333333, 0.15833333333333333, 0.18333333333333332, 0.15, 0.15833333333333333, 0.16666666666666666, 0.175, 0.16666666666666666, 0.15833333333333333, 0.15, 0.14166666666666666, 0.14166666666666666, 0.14166666666666666, 0.15, 0.95, 0.24166666666666667, 0.25, 0.95, 0.95, 0.95, 0.175, 0.14166666666666666, 0.14166666666666666, 0.14166666666666666, 0.14166666666666666, 0.14166666666666666, 0.14166666666666666, 0.15, 0.15, 0.15, 0.15, 0.175, 0.16666666666666666, 0.175, 0.15833333333333333, 0.15833333333333333, 0.16666666666666666, 0.175, 0.175, 0.16666666666666666, 0.16666666666666666, 0.16666666666666666, 0.18333333333333332, 0.19166666666666668, 0.19166666666666668, 0.21666666666666667, 0.275, 0.19166666666666668, 0.19166666666666668, 0.20833333333333334, 0.2, 0.2, 0.2833333333333333, 0.21666666666666667, 0.21666666666666667, 0.21666666666666667, 0.21666666666666667, 0.2916666666666667, 0.9166666666666666, 0.8916666666666667, 0.24166666666666667, 0.24166666666666667, 0.25, 0.25833333333333336, 0.275, 0.275, 0.275, 0.275, 0.275, 0.275, 0.275, 0.3, 0.3416666666666667, 0.375, 0.6, 0.9416666666666667, 0.9416666666666667, 0.825, 0.44166666666666665, 0.39166666666666666, 0.4, 0.4083333333333333, 0.4, 0.4, 0.4, 0.4166666666666667, 0.45, 0.4666666666666667, 0.5833333333333334, 0.5916666666666667, 0.6083333333333333, 0.625, 0.65, 0.675, 0.725, 0.75, 0.775, 0.825, 0.9333333333333333], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/WHIM1.gap.json b/pfam_gap_rates/WHIM1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..7d1af17e6860104eaee415b4127424e4aa8d14e9
--- /dev/null
+++ b/pfam_gap_rates/WHIM1.gap.json
@@ -0,0 +1 @@
+{"family": "WHIM1", "n_seqs": 653, "length": 46, "gap_rates": [0.8606431852986217, 0.7029096477794793, 0.5666156202143952, 0.5007656967840735, 0.43797856049004597, 0.4058192955589586, 0.37519142419601836, 0.3552833078101072, 0.3215926493108729, 0.2833078101071976, 0.24808575803981622, 0.20214395099540583, 0.17457886676875958, 0.12557427258805512, 0.06278713629402756, 0.06125574272588055, 0.03828483920367534, 0.030627871362940276, 0.01225114854517611, 0.006125574272588055, 0.004594180704441042, 0.0030627871362940277, 0.0015313935681470138, 0.0015313935681470138, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0015313935681470138, 0.004594180704441042, 0.039816232771822356, 0.0444104134762634, 0.0444104134762634, 0.055130168453292494, 0.8958652373660031, 0.06738131699846861, 0.07044410413476264, 0.08575803981623277, 0.0995405819295559, 0.1562021439509954, 0.22052067381316998, 0.24808575803981622, 0.37366003062787134], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/WLM.gap.json b/pfam_gap_rates/WLM.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e161b5a3174d04487832f5f9a1ffe2e66d308ae7
--- /dev/null
+++ b/pfam_gap_rates/WLM.gap.json
@@ -0,0 +1 @@
+{"family": "WLM", "n_seqs": 453, "length": 262, "gap_rates": [0.8300220750551877, 0.6490066225165563, 0.4922737306843267, 0.3576158940397351, 0.2913907284768212, 0.2737306843267108, 0.25165562913907286, 0.24061810154525387, 0.2185430463576159, 0.9492273730684326, 0.9448123620309051, 0.31346578366445915, 0.15011037527593818, 0.12582781456953643, 0.11699779249448124, 0.11479028697571744, 0.11258278145695365, 0.11258278145695365, 0.11258278145695365, 0.11037527593818984, 0.11037527593818984, 0.10816777041942605, 0.10816777041942605, 0.10816777041942605, 0.10816777041942605, 0.10596026490066225, 0.10596026490066225, 0.10596026490066225, 0.10596026490066225, 0.6688741721854304, 0.6688741721854304, 0.10154525386313466, 0.09933774834437085, 0.09713024282560706, 0.09713024282560706, 0.07505518763796909, 0.07505518763796909, 0.0728476821192053, 0.0728476821192053, 0.0728476821192053, 0.0706401766004415, 0.0684326710816777, 0.0706401766004415, 0.0728476821192053, 0.0728476821192053, 0.0728476821192053, 0.0728476821192053, 0.0684326710816777, 0.07505518763796909, 0.0772626931567329, 0.0772626931567329, 0.0640176600441501, 0.08167770419426049, 0.0728476821192053, 0.20309050772626933, 0.7152317880794702, 0.7196467991169978, 0.7902869757174393, 0.8874172185430463, 0.8874172185430463, 0.8852097130242825, 0.7196467991169978, 0.7152317880794702, 0.6622516556291391, 0.0640176600441501, 0.06622516556291391, 0.0772626931567329, 0.0728476821192053, 0.059602649006622516, 0.059602649006622516, 0.059602649006622516, 0.05518763796909492, 0.059602649006622516, 0.05518763796909492, 0.05739514348785872, 0.059602649006622516, 0.05739514348785872, 0.05739514348785872, 0.05739514348785872, 0.05518763796909492, 0.05518763796909492, 0.05518763796909492, 0.05518763796909492, 0.05739514348785872, 0.06622516556291391, 0.5938189845474614, 0.17218543046357615, 0.06181015452538632, 0.06181015452538632, 0.059602649006622516, 0.05518763796909492, 0.05518763796909492, 0.05518763796909492, 0.05518763796909492, 0.052980132450331126, 0.04856512141280353, 0.04415011037527594, 0.04415011037527594, 0.03090507726269316, 0.03090507726269316, 0.03090507726269316, 0.02869757174392936, 0.02869757174392936, 0.02869757174392936, 0.024282560706401765, 0.02207505518763797, 0.02869757174392936, 0.033112582781456956, 0.033112582781456956, 0.037527593818984545, 0.04194260485651214, 0.04415011037527594, 0.04856512141280353, 0.039735099337748346, 0.039735099337748346, 0.039735099337748346, 0.039735099337748346, 0.039735099337748346, 0.039735099337748346, 0.039735099337748346, 0.039735099337748346, 0.046357615894039736, 0.04856512141280353, 0.052980132450331126, 0.059602649006622516, 0.059602649006622516, 0.06181015452538632, 0.0640176600441501, 0.0728476821192053, 0.0706401766004415, 0.07505518763796909, 0.3730684326710817, 0.3995584988962472, 0.3841059602649007, 0.37969094922737306, 0.8410596026490066, 0.8565121412803532, 0.45695364238410596, 0.37969094922737306, 0.3620309050772627, 0.24503311258278146, 0.12141280353200883, 0.11258278145695365, 0.11258278145695365, 0.10154525386313466, 0.10375275938189846, 0.10375275938189846, 0.10596026490066225, 0.10596026490066225, 0.10596026490066225, 0.11479028697571744, 0.11479028697571744, 0.11699779249448124, 0.12362030905077263, 0.1368653421633554, 0.1479028697571744, 0.37748344370860926, 0.38852097130242824, 0.5827814569536424, 0.6887417218543046, 0.739514348785872, 0.8896247240618101, 0.9094922737306843, 0.9359823399558499, 0.9470198675496688, 0.9381898454746137, 0.9249448123620309, 0.9028697571743929, 0.8609271523178808, 0.7152317880794702, 0.6379690949227373, 0.5033112582781457, 0.3973509933774834, 0.40176600441501104, 0.3576158940397351, 0.2781456953642384, 0.26048565121412803, 0.23620309050772628, 0.22958057395143489, 0.22737306843267108, 0.22075055187637968, 0.2185430463576159, 0.2163355408388521, 0.2229580573951435, 0.22075055187637968, 0.2251655629139073, 0.23178807947019867, 0.22737306843267108, 0.22075055187637968, 0.23620309050772628, 0.22075055187637968, 0.2229580573951435, 0.2251655629139073, 0.22737306843267108, 0.23841059602649006, 0.24944812362030905, 0.24944812362030905, 0.2693156732891832, 0.9116997792494481, 0.9403973509933775, 0.869757174392936, 0.7108167770419426, 0.6887417218543046, 0.4878587196467991, 0.8675496688741722, 0.869757174392936, 0.8763796909492274, 0.8940397350993378, 0.9094922737306843, 0.9139072847682119, 0.9183222958057395, 0.9271523178807947, 0.9293598233995585, 0.9315673289183223, 0.9315673289183223, 0.9315673289183223, 0.9315673289183223, 0.9315673289183223, 0.9315673289183223, 0.9337748344370861, 0.9381898454746137, 0.9403973509933775, 0.9403973509933775, 0.9448123620309051, 0.9403973509933775, 0.9381898454746137, 0.9381898454746137, 0.9337748344370861, 0.9315673289183223, 0.9315673289183223, 0.9315673289183223, 0.9315673289183223, 0.9315673289183223, 0.9315673289183223, 0.9293598233995585, 0.9249448123620309, 0.9139072847682119, 0.9116997792494481, 0.9006622516556292, 0.8807947019867549, 0.8741721854304636, 0.8675496688741722, 0.8675496688741722, 0.32671081677704195, 0.293598233995585, 0.282560706401766, 0.282560706401766, 0.282560706401766, 0.2847682119205298, 0.2847682119205298, 0.2869757174392936, 0.293598233995585, 0.30022075055187636, 0.304635761589404, 0.304635761589404, 0.304635761589404, 0.304635761589404, 0.304635761589404, 0.31346578366445915, 0.31346578366445915, 0.38631346578366443, 0.8807947019867549], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/WPP.gap.json b/pfam_gap_rates/WPP.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..2b36c647f4c88ece68caea5405632b6f2965e283
--- /dev/null
+++ b/pfam_gap_rates/WPP.gap.json
@@ -0,0 +1 @@
+{"family": "WPP", "n_seqs": 106, "length": 103, "gap_rates": [0.3018867924528302, 0.12264150943396226, 0.09433962264150944, 0.07547169811320754, 0.04716981132075472, 0.04716981132075472, 0.04716981132075472, 0.04716981132075472, 0.0660377358490566, 0.05660377358490566, 0.05660377358490566, 0.03773584905660377, 0.03773584905660377, 0.03773584905660377, 0.03773584905660377, 0.03773584905660377, 0.03773584905660377, 0.03773584905660377, 0.03773584905660377, 0.03773584905660377, 0.03773584905660377, 0.03773584905660377, 0.03773584905660377, 0.03773584905660377, 0.03773584905660377, 0.03773584905660377, 0.03773584905660377, 0.03773584905660377, 0.03773584905660377, 0.10377358490566038, 0.10377358490566038, 0.07547169811320754, 0.03773584905660377, 0.04716981132075472, 0.04716981132075472, 0.04716981132075472, 0.03773584905660377, 0.03773584905660377, 0.03773584905660377, 0.03773584905660377, 0.03773584905660377, 0.03773584905660377, 0.03773584905660377, 0.03773584905660377, 0.02830188679245283, 0.02830188679245283, 0.02830188679245283, 0.02830188679245283, 0.02830188679245283, 0.02830188679245283, 0.02830188679245283, 0.02830188679245283, 0.02830188679245283, 0.02830188679245283, 0.02830188679245283, 0.02830188679245283, 0.8113207547169812, 0.8490566037735849, 0.8679245283018868, 0.8301886792452831, 0.7924528301886793, 0.39622641509433965, 0.37735849056603776, 0.330188679245283, 0.3490566037735849, 0.330188679245283, 0.41509433962264153, 0.24528301886792453, 0.18867924528301888, 0.08490566037735849, 0.07547169811320754, 0.07547169811320754, 0.03773584905660377, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.009433962264150943, 0.02830188679245283, 0.02830188679245283, 0.02830188679245283, 0.04716981132075472, 0.0660377358490566, 0.1320754716981132, 0.19811320754716982, 0.41509433962264153, 0.6698113207547169], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/WhiA_N.gap.json b/pfam_gap_rates/WhiA_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..454b79379919243f09beb08f284dafeaac331756
--- /dev/null
+++ b/pfam_gap_rates/WhiA_N.gap.json
@@ -0,0 +1 @@
+{"family": "WhiA_N", "n_seqs": 730, "length": 89, "gap_rates": [0.8027397260273973, 0.27945205479452057, 0.11232876712328767, 0.06438356164383562, 0.03424657534246575, 0.026027397260273973, 0.023287671232876714, 0.01643835616438356, 0.01643835616438356, 0.01643835616438356, 0.01643835616438356, 0.015068493150684932, 0.015068493150684932, 0.012328767123287671, 0.015068493150684932, 0.015068493150684932, 0.012328767123287671, 0.0136986301369863, 0.0136986301369863, 0.015068493150684932, 0.01643835616438356, 0.7643835616438356, 0.06575342465753424, 0.04794520547945205, 0.04246575342465753, 0.036986301369863014, 0.010958904109589041, 0.0027397260273972603, 0.00410958904109589, 0.0027397260273972603, 0.0013698630136986301, 0.0013698630136986301, 0.0013698630136986301, 0.0013698630136986301, 0.0013698630136986301, 0.0013698630136986301, 0.0013698630136986301, 0.0013698630136986301, 0.0013698630136986301, 0.0013698630136986301, 0.0013698630136986301, 0.0013698630136986301, 0.0013698630136986301, 0.0013698630136986301, 0.0013698630136986301, 0.0, 0.0, 0.0013698630136986301, 0.009589041095890411, 0.0027397260273972603, 0.0027397260273972603, 0.0027397260273972603, 0.0013698630136986301, 0.005479452054794521, 0.00821917808219178, 0.00821917808219178, 0.0136986301369863, 0.015068493150684932, 0.015068493150684932, 0.0273972602739726, 0.026027397260273973, 0.023287671232876714, 0.0273972602739726, 0.026027397260273973, 0.024657534246575342, 0.028767123287671233, 0.026027397260273973, 0.026027397260273973, 0.026027397260273973, 0.024657534246575342, 0.024657534246575342, 0.028767123287671233, 0.038356164383561646, 0.03561643835616438, 0.0410958904109589, 0.049315068493150684, 0.7410958904109589, 0.7205479452054795, 0.050684931506849315, 0.05342465753424658, 0.056164383561643834, 0.0589041095890411, 0.06986301369863014, 0.0821917808219178, 0.09315068493150686, 0.10547945205479452, 0.12054794520547946, 0.14794520547945206, 0.4232876712328767], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/XK-related.gap.json b/pfam_gap_rates/XK-related.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..52907544af4ef49fa2b6c4670e964de56838141b
--- /dev/null
+++ b/pfam_gap_rates/XK-related.gap.json
@@ -0,0 +1 @@
+{"family": "XK-related", "n_seqs": 422, "length": 442, "gap_rates": [0.7819905213270142, 0.6445497630331753, 0.523696682464455, 0.4549763033175355, 0.44549763033175355, 0.43364928909952605, 0.4194312796208531, 0.41232227488151657, 0.4052132701421801, 0.4052132701421801, 0.4028436018957346, 0.4004739336492891, 0.4004739336492891, 0.4004739336492891, 0.4004739336492891, 0.3981042654028436, 0.3981042654028436, 0.3791469194312796, 0.3767772511848341, 0.3744075829383886, 0.3744075829383886, 0.37203791469194314, 0.3696682464454976, 0.37203791469194314, 0.37203791469194314, 0.3696682464454976, 0.36729857819905215, 0.36492890995260663, 0.36018957345971564, 0.36018957345971564, 0.3578199052132701, 0.3578199052132701, 0.3578199052132701, 0.35545023696682465, 0.35308056872037913, 0.35071090047393366, 0.34834123222748814, 0.3459715639810427, 0.38388625592417064, 0.3459715639810427, 0.33886255924170616, 0.33886255924170616, 0.33649289099526064, 0.33886255924170616, 0.33649289099526064, 0.3341232227488152, 0.33175355450236965, 0.3341232227488152, 0.4431279620853081, 0.34360189573459715, 0.33886255924170616, 0.3341232227488152, 0.33175355450236965, 0.33175355450236965, 0.34834123222748814, 0.34360189573459715, 0.34360189573459715, 0.35071090047393366, 0.34360189573459715, 0.34834123222748814, 0.35071090047393366, 0.35071090047393366, 0.36492890995260663, 0.5165876777251185, 0.5521327014218009, 0.6090047393364929, 0.6587677725118484, 0.6895734597156398, 0.7748815165876777, 0.7890995260663507, 0.8364928909952607, 0.8459715639810427, 0.8601895734597157, 0.8791469194312796, 0.8933649289099526, 0.9052132701421801, 0.9146919431279621, 0.9170616113744076, 0.919431279620853, 0.9312796208530806, 0.9312796208530806, 0.933649289099526, 0.933649289099526, 0.9383886255924171, 0.9383886255924171, 0.9383886255924171, 0.9407582938388626, 0.9407582938388626, 0.9383886255924171, 0.9383886255924171, 0.933649289099526, 0.933649289099526, 0.9312796208530806, 0.9312796208530806, 0.9265402843601895, 0.9170616113744076, 0.9170616113744076, 0.9123222748815166, 0.8981042654028436, 0.8862559241706162, 0.8696682464454977, 0.8507109004739336, 0.8388625592417062, 0.8080568720379147, 0.7819905213270142, 0.7488151658767772, 0.6753554502369669, 0.6350710900473934, 0.5639810426540285, 0.542654028436019, 0.3767772511848341, 0.36729857819905215, 0.35308056872037913, 0.3293838862559242, 0.31990521327014215, 0.3127962085308057, 0.3056872037914692, 0.2938388625592417, 0.2890995260663507, 0.2890995260663507, 0.28672985781990523, 0.2890995260663507, 0.28199052132701424, 0.2772511848341232, 0.2725118483412322, 0.25829383886255924, 0.2677725118483412, 0.2796208530805687, 0.28199052132701424, 0.28199052132701424, 0.28199052132701424, 0.28672985781990523, 0.36492890995260663, 0.37203791469194314, 0.36729857819905215, 0.36492890995260663, 0.3862559241706161, 0.3909952606635071, 0.45260663507109006, 0.45260663507109006, 0.45734597156398105, 0.42890995260663506, 0.7511848341232228, 0.7890995260663507, 0.8341232227488151, 0.8696682464454977, 0.8744075829383886, 0.8744075829383886, 0.8767772511848341, 0.8767772511848341, 0.8815165876777251, 0.9052132701421801, 0.9454976303317536, 0.8838862559241706, 0.8767772511848341, 0.8767772511848341, 0.8744075829383886, 0.8744075829383886, 0.8720379146919431, 0.8530805687203792, 0.8317535545023697, 0.7630331753554502, 0.6895734597156398, 0.556872037914692, 0.504739336492891, 0.4549763033175355, 0.43601895734597157, 0.31990521327014215, 0.3009478672985782, 0.3033175355450237, 0.45734597156398105, 0.3459715639810427, 0.2843601895734597, 0.26540284360189575, 0.26540284360189575, 0.2914691943127962, 0.25829383886255924, 0.24407582938388625, 0.24170616113744076, 0.23696682464454977, 0.23933649289099526, 0.23696682464454977, 0.23696682464454977, 0.23696682464454977, 0.23933649289099526, 0.24407582938388625, 0.23696682464454977, 0.22985781990521326, 0.22985781990521326, 0.23459715639810427, 0.23459715639810427, 0.23459715639810427, 0.23459715639810427, 0.23459715639810427, 0.23459715639810427, 0.23459715639810427, 0.23459715639810427, 0.23696682464454977, 0.23696682464454977, 0.23696682464454977, 0.23696682464454977, 0.23696682464454977, 0.23222748815165878, 0.23222748815165878, 0.22985781990521326, 0.26540284360189575, 0.2843601895734597, 0.6090047393364929, 0.7061611374407583, 0.7488151658767772, 0.8436018957345972, 0.8791469194312796, 0.9170616113744076, 0.933649289099526, 0.9478672985781991, 0.9478672985781991, 0.943127962085308, 0.9312796208530806, 0.8862559241706162, 0.8672985781990521, 0.8151658767772512, 0.7251184834123223, 0.6919431279620853, 0.3009478672985782, 0.27488151658767773, 0.26303317535545023, 0.25118483412322273, 0.3412322274881517, 0.2890995260663507, 0.2796208530805687, 0.26303317535545023, 0.25355450236966826, 0.25355450236966826, 0.2559241706161137, 0.25829383886255924, 0.26066350710900477, 0.26066350710900477, 0.26303317535545023, 0.26540284360189575, 0.26540284360189575, 0.26540284360189575, 0.26066350710900477, 0.25829383886255924, 0.26066350710900477, 0.25829383886255924, 0.26066350710900477, 0.26540284360189575, 0.27014218009478674, 0.27014218009478674, 0.2677725118483412, 0.26303317535545023, 0.8767772511848341, 0.35071090047393366, 0.3293838862559242, 0.3175355450236967, 0.3033175355450237, 0.3104265402843602, 0.3104265402843602, 0.8530805687203792, 0.3033175355450237, 0.3009478672985782, 0.3009478672985782, 0.3033175355450237, 0.3009478672985782, 0.9075829383886256, 0.2985781990521327, 0.28199052132701424, 0.2796208530805687, 0.27014218009478674, 0.27014218009478674, 0.2677725118483412, 0.26540284360189575, 0.26540284360189575, 0.26540284360189575, 0.26303317535545023, 0.27014218009478674, 0.28199052132701424, 0.2677725118483412, 0.26540284360189575, 0.2677725118483412, 0.2677725118483412, 0.2677725118483412, 0.26303317535545023, 0.26303317535545023, 0.26540284360189575, 0.26540284360189575, 0.2677725118483412, 0.27014218009478674, 0.2725118483412322, 0.2725118483412322, 0.2725118483412322, 0.2725118483412322, 0.2725118483412322, 0.2772511848341232, 0.27488151658767773, 0.2725118483412322, 0.27488151658767773, 0.2725118483412322, 0.2725118483412322, 0.2725118483412322, 0.2725118483412322, 0.27488151658767773, 0.27488151658767773, 0.2772511848341232, 0.2725118483412322, 0.2725118483412322, 0.27488151658767773, 0.27488151658767773, 0.2725118483412322, 0.27014218009478674, 0.27488151658767773, 0.27488151658767773, 0.8909952606635071, 0.8862559241706162, 0.28672985781990523, 0.2890995260663507, 0.9407582938388626, 0.3127962085308057, 0.3033175355450237, 0.2985781990521327, 0.3080568720379147, 0.3056872037914692, 0.3009478672985782, 0.3080568720379147, 0.7985781990521327, 0.8483412322274881, 0.8696682464454977, 0.8767772511848341, 0.8815165876777251, 0.8909952606635071, 0.8838862559241706, 0.8767772511848341, 0.8744075829383886, 0.8554502369668247, 0.8199052132701422, 0.7843601895734598, 0.3246445497630332, 0.35071090047393366, 0.3412322274881517, 0.3175355450236967, 0.3127962085308057, 0.3127962085308057, 0.3104265402843602, 0.3056872037914692, 0.3056872037914692, 0.3009478672985782, 0.2985781990521327, 0.2985781990521327, 0.2962085308056872, 0.2985781990521327, 0.3009478672985782, 0.3009478672985782, 0.3033175355450237, 0.3056872037914692, 0.3056872037914692, 0.3080568720379147, 0.3033175355450237, 0.3033175355450237, 0.3033175355450237, 0.8909952606635071, 0.8933649289099526, 0.8957345971563981, 0.8981042654028436, 0.9004739336492891, 0.8981042654028436, 0.8933649289099526, 0.8933649289099526, 0.8909952606635071, 0.31516587677725116, 0.8744075829383886, 0.31990521327014215, 0.3080568720379147, 0.3080568720379147, 0.3080568720379147, 0.3104265402843602, 0.3080568720379147, 0.3080568720379147, 0.3080568720379147, 0.3104265402843602, 0.3104265402843602, 0.3080568720379147, 0.3080568720379147, 0.3080568720379147, 0.3080568720379147, 0.3080568720379147, 0.3104265402843602, 0.3104265402843602, 0.3127962085308057, 0.31516587677725116, 0.31516587677725116, 0.31990521327014215, 0.31990521327014215, 0.31990521327014215, 0.31990521327014215, 0.31990521327014215, 0.31990521327014215, 0.31990521327014215, 0.33649289099526064, 0.33649289099526064, 0.34834123222748814, 0.35308056872037913, 0.35545023696682465, 0.36018957345971564, 0.36729857819905215, 0.4099526066350711, 0.6872037914691943, 0.9289099526066351, 0.8886255924170616, 0.54739336492891, 0.3791469194312796, 0.36255924170616116, 0.35545023696682465, 0.35545023696682465, 0.34834123222748814, 0.3459715639810427, 0.3459715639810427, 0.3791469194312796, 0.38388625592417064, 0.35308056872037913, 0.8270142180094787, 0.35071090047393366, 0.34834123222748814, 0.34834123222748814, 0.34834123222748814, 0.35071090047393366, 0.35308056872037913, 0.35308056872037913, 0.35545023696682465, 0.35545023696682465, 0.35545023696682465, 0.3578199052132701, 0.36729857819905215, 0.3696682464454976, 0.3744075829383886, 0.3815165876777251, 0.3909952606635071, 0.3981042654028436, 0.4052132701421801, 0.4099526066350711, 0.4312796208530806, 0.45260663507109006, 0.7440758293838863], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/XPG_I.gap.json b/pfam_gap_rates/XPG_I.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..67d93bf48313e001f89024907998e2934be8ff07
--- /dev/null
+++ b/pfam_gap_rates/XPG_I.gap.json
@@ -0,0 +1 @@
+{"family": "XPG_I", "n_seqs": 1707, "length": 103, "gap_rates": [0.7416520210896309, 0.2630345635618043, 0.10076157000585823, 0.07381370826010544, 0.05975395430579965, 0.054481546572934976, 0.04862331575864089, 0.042765084944346804, 0.03925014645577036, 0.033391915641476276, 0.032806092560046865, 0.025190392501464556, 0.023432923257176334, 0.022261277094317515, 0.021675454012888107, 0.021675454012888107, 0.01991798476859988, 0.01816051552431166, 0.01757469244288225, 0.015231400117164616, 0.015231400117164616, 0.015817223198594025, 0.014645577035735208, 0.012302284710017574, 0.012888107791446984, 0.009373169302870533, 0.011130638547158758, 0.00995899238429994, 0.008787346221441126, 0.009373169302870533, 0.009373169302870533, 0.01054481546572935, 0.011716461628588167, 0.01698886936145284, 0.009373169302870533, 0.01054481546572935, 0.00995899238429994, 0.009373169302870533, 0.00995899238429994, 0.009373169302870533, 0.009373169302870533, 0.01054481546572935, 0.012302284710017574, 0.026362038664323375, 0.016403046280023433, 0.015817223198594025, 0.015817223198594025, 0.01757469244288225, 0.018746338605741066, 0.022847100175746926, 0.8834212067955477, 0.8289396602226128, 0.658465143526655, 0.0984182776801406, 0.12888107791446984, 0.09548916227299356, 0.17223198594024605, 0.31224370240187466, 0.8828353837141183, 0.9191564147627417, 0.9320445225541887, 0.9390743995313415, 0.9291154071470415, 0.9127123608670181, 0.8740480374926772, 0.7984768599882835, 0.7779730521382543, 0.7287639132981839, 0.6760398359695372, 0.36321031048623315, 0.26420620972466313, 0.09724663151728179, 0.05916813122437024, 0.05741066198008202, 0.05506736965436438, 0.054481546572934976, 0.054481546572934976, 0.05858230814294083, 0.1200937316930287, 0.07908611599297012, 0.070298769771529, 0.070298769771529, 0.070298769771529, 0.06912712360867018, 0.9314586994727593, 0.08553016988869361, 0.07674282366725249, 0.0638547158758055, 0.06561218512009373, 0.06619800820152313, 0.06502636203866433, 0.06619800820152313, 0.06912712360867018, 0.070298769771529, 0.07322788517867604, 0.07322788517867604, 0.07498535442296426, 0.07557117750439367, 0.07791446983011131, 0.07908611599297012, 0.08025776215582894, 0.08728763913298183, 0.09724663151728179], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/XRCC1_N.gap.json b/pfam_gap_rates/XRCC1_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a7c059f3a8fd81cf96fe14989e10869c36d7a6e5
--- /dev/null
+++ b/pfam_gap_rates/XRCC1_N.gap.json
@@ -0,0 +1 @@
+{"family": "XRCC1_N", "n_seqs": 126, "length": 151, "gap_rates": [0.4444444444444444, 0.4444444444444444, 0.4444444444444444, 0.3888888888888889, 0.38095238095238093, 0.373015873015873, 0.373015873015873, 0.2619047619047619, 0.24603174603174602, 0.24603174603174602, 0.24603174603174602, 0.23809523809523808, 0.23809523809523808, 0.23015873015873015, 0.1984126984126984, 0.18253968253968253, 0.18253968253968253, 0.15873015873015872, 0.15873015873015872, 0.15873015873015872, 0.15079365079365079, 0.14285714285714285, 0.14285714285714285, 0.14285714285714285, 0.14285714285714285, 0.14285714285714285, 0.14285714285714285, 0.18253968253968253, 0.6904761904761905, 0.16666666666666666, 0.16666666666666666, 0.14285714285714285, 0.14285714285714285, 0.14285714285714285, 0.14285714285714285, 0.14285714285714285, 0.1349206349206349, 0.1349206349206349, 0.15079365079365079, 0.2222222222222222, 0.2222222222222222, 0.7619047619047619, 0.12698412698412698, 0.11904761904761904, 0.11904761904761904, 0.11904761904761904, 0.11904761904761904, 0.1111111111111111, 0.09523809523809523, 0.09523809523809523, 0.09523809523809523, 0.09523809523809523, 0.09523809523809523, 0.09523809523809523, 0.09523809523809523, 0.0873015873015873, 0.07936507936507936, 0.0873015873015873, 0.0873015873015873, 0.0873015873015873, 0.0873015873015873, 0.0873015873015873, 0.0873015873015873, 0.0873015873015873, 0.09523809523809523, 0.09523809523809523, 0.1111111111111111, 0.11904761904761904, 0.1349206349206349, 0.1349206349206349, 0.12698412698412698, 0.12698412698412698, 0.12698412698412698, 0.1349206349206349, 0.1349206349206349, 0.1349206349206349, 0.14285714285714285, 0.8968253968253969, 0.5873015873015873, 0.4126984126984127, 0.29365079365079366, 0.1746031746031746, 0.16666666666666666, 0.16666666666666666, 0.16666666666666666, 0.16666666666666666, 0.1746031746031746, 0.1746031746031746, 0.18253968253968253, 0.18253968253968253, 0.19047619047619047, 0.19047619047619047, 0.19047619047619047, 0.16666666666666666, 0.1746031746031746, 0.15873015873015872, 0.16666666666666666, 0.16666666666666666, 0.16666666666666666, 0.16666666666666666, 0.16666666666666666, 0.16666666666666666, 0.1746031746031746, 0.16666666666666666, 0.16666666666666666, 0.16666666666666666, 0.16666666666666666, 0.16666666666666666, 0.1746031746031746, 0.1746031746031746, 0.1746031746031746, 0.18253968253968253, 0.19047619047619047, 0.19047619047619047, 0.1984126984126984, 0.19047619047619047, 0.20634920634920634, 0.1984126984126984, 0.20634920634920634, 0.23809523809523808, 0.21428571428571427, 0.21428571428571427, 0.21428571428571427, 0.2222222222222222, 0.2222222222222222, 0.2222222222222222, 0.2222222222222222, 0.2222222222222222, 0.23015873015873015, 0.23015873015873015, 0.23015873015873015, 0.23809523809523808, 0.23809523809523808, 0.23809523809523808, 0.23809523809523808, 0.23809523809523808, 0.23809523809523808, 0.23809523809523808, 0.23809523809523808, 0.23809523809523808, 0.2619047619047619, 0.29365079365079366, 0.2619047619047619, 0.2619047619047619, 0.2619047619047619, 0.2698412698412698, 0.2777777777777778, 0.2777777777777778, 0.2777777777777778, 0.2777777777777778, 0.4126984126984127], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/XRN_N.gap.json b/pfam_gap_rates/XRN_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..24dbc0167901806ce3bb1f207b33d58081f07915
--- /dev/null
+++ b/pfam_gap_rates/XRN_N.gap.json
@@ -0,0 +1 @@
+{"family": "XRN_N", "n_seqs": 873, "length": 278, "gap_rates": [0.293241695303551, 0.26804123711340205, 0.2623138602520046, 0.2623138602520046, 0.25773195876288657, 0.2520045819014891, 0.24971363115693013, 0.24742268041237114, 0.24513172966781213, 0.24398625429553264, 0.24169530355097366, 0.24054982817869416, 0.23825887743413515, 0.23711340206185566, 0.23825887743413515, 0.413516609392898, 0.23825887743413515, 0.23825887743413515, 0.23940435280641467, 0.2325315005727377, 0.2325315005727377, 0.3150057273768614, 0.27949599083619703, 0.2898052691867125, 0.6013745704467354, 0.6071019473081328, 0.6105383734249714, 0.6197021764032073, 0.6288659793814433, 0.6403207331042382, 0.6563573883161512, 0.6781214203894617, 0.7079037800687286, 0.9186712485681557, 0.9392898052691867, 0.9450171821305842, 0.9369988545246277, 0.852233676975945, 0.6987399770904925, 0.6701030927835051, 0.6517754868270332, 0.6334478808705613, 0.6231386025200458, 0.6151202749140894, 0.6082474226804123, 0.6059564719358533, 0.6013745704467354, 0.29896907216494845, 0.24284077892325315, 0.21649484536082475, 0.21191294387170675, 0.8602520045819015, 0.18900343642611683, 0.18556701030927836, 0.18327605956471935, 0.18213058419243985, 0.18213058419243985, 0.18213058419243985, 0.17983963344788087, 0.17983963344788087, 0.15349369988545247, 0.15234822451317298, 0.15234822451317298, 0.15234822451317298, 0.15463917525773196, 0.15578465063001146, 0.15578465063001146, 0.15578465063001146, 0.15463917525773196, 0.15922107674684993, 0.16494845360824742, 0.9438717067583047, 0.9369988545246277, 0.8785796105383734, 0.6872852233676976, 0.6185567010309279, 0.23482245131729668, 0.2256586483390607, 0.22107674684994272, 0.21534936998854526, 0.19931271477663232, 0.16265750286368844, 0.15463917525773196, 0.1466208476517755, 0.14432989690721648, 0.145475372279496, 0.145475372279496, 0.13974799541809851, 0.13745704467353953, 0.13402061855670103, 0.13287514318442153, 0.13287514318442153, 0.13287514318442153, 0.13287514318442153, 0.13287514318442153, 0.12829324169530354, 0.12829324169530354, 0.12714776632302405, 0.12829324169530354, 0.12943871706758306, 0.12829324169530354, 0.12485681557846506, 0.12485681557846506, 0.12600229095074456, 0.12485681557846506, 0.12485681557846506, 0.12485681557846506, 0.12600229095074456, 0.12714776632302405, 0.12600229095074456, 0.12256586483390607, 0.12371134020618557, 0.12142038946162657, 0.12371134020618557, 0.12485681557846506, 0.12371134020618557, 0.12714776632302405, 0.12714776632302405, 0.12829324169530354, 0.12829324169530354, 0.12829324169530354, 0.12256586483390607, 0.12714776632302405, 0.12829324169530354, 0.12829324169530354, 0.12829324169530354, 0.12714776632302405, 0.12714776632302405, 0.12829324169530354, 0.12943871706758306, 0.13172966781214204, 0.13860252004581902, 0.143184421534937, 0.15463917525773196, 0.15922107674684993, 0.16380297823596793, 0.1729667812142039, 0.1764032073310424, 0.18213058419243985, 0.19473081328751432, 0.2222222222222222, 0.23940435280641467, 0.26575028636884307, 0.2852233676975945, 0.2898052691867125, 0.49828178694158076, 0.5028636884306987, 0.5028636884306987, 0.5131729667812142, 0.5108820160366552, 0.5120274914089347, 0.5166093928980527, 0.49828178694158076, 0.3402061855670103, 0.3104238258877434, 0.3172966781214204, 0.3024054982817869, 0.2508591065292096, 0.6414662084765178, 0.856815578465063, 0.8762886597938144, 0.9232531500572738, 0.9369988545246277, 0.9415807560137457, 0.9461626575028637, 0.9473081328751431, 0.9450171821305842, 0.9392898052691867, 0.9324169530355098, 0.8854524627720504, 0.870561282932417, 0.7663230240549829, 0.6197021764032073, 0.2222222222222222, 0.2016036655211913, 0.18900343642611683, 0.1775486827033219, 0.16494845360824742, 0.15922107674684993, 0.15578465063001146, 0.15463917525773196, 0.15463917525773196, 0.15120274914089346, 0.15120274914089346, 0.15005727376861397, 0.15005727376861397, 0.14776632302405499, 0.15005727376861397, 0.14891179839633448, 0.15005727376861397, 0.145475372279496, 0.145475372279496, 0.145475372279496, 0.14432989690721648, 0.1420389461626575, 0.140893470790378, 0.13974799541809851, 0.140893470790378, 0.140893470790378, 0.13974799541809851, 0.13974799541809851, 0.140893470790378, 0.13974799541809851, 0.140893470790378, 0.145475372279496, 0.14432989690721648, 0.14432989690721648, 0.1958762886597938, 0.1672394043528064, 0.15578465063001146, 0.15463917525773196, 0.15234822451317298, 0.15922107674684993, 0.15349369988545247, 0.143184421534937, 0.140893470790378, 0.13860252004581902, 0.13974799541809851, 0.13974799541809851, 0.13974799541809851, 0.13631156930126, 0.13745704467353953, 0.13860252004581902, 0.1420389461626575, 0.143184421534937, 0.143184421534937, 0.1420389461626575, 0.13974799541809851, 0.13974799541809851, 0.140893470790378, 0.140893470790378, 0.140893470790378, 0.13631156930126, 0.13631156930126, 0.13745704467353953, 0.13860252004581902, 0.13974799541809851, 0.1420389461626575, 0.145475372279496, 0.14891179839633448, 0.21076746849942726, 0.21305841924398625, 0.2016036655211913, 0.19129438717067582, 0.17411225658648338, 0.15807560137457044, 0.15463917525773196, 0.16151202749140894, 0.15693012600229095, 0.14776632302405499, 0.14776632302405499, 0.15005727376861397, 0.15005727376861397, 0.15005727376861397, 0.15005727376861397, 0.15005727376861397, 0.15578465063001146, 0.15693012600229095, 0.15693012600229095, 0.15693012600229095, 0.15693012600229095, 0.15807560137457044, 0.15807560137457044, 0.15807560137457044, 0.15922107674684993, 0.16036655211912945, 0.16494845360824742, 0.1775486827033219, 0.18327605956471935, 0.18900343642611683, 0.19358533791523483, 0.19358533791523483, 0.1970217640320733, 0.20504009163802978, 0.21305841924398625, 0.2256586483390607, 0.24054982817869416, 0.6345933562428407], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/XS.gap.json b/pfam_gap_rates/XS.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..04e1885f00010597f94b25db09bfbe1edfad7780
--- /dev/null
+++ b/pfam_gap_rates/XS.gap.json
@@ -0,0 +1 @@
+{"family": "XS", "n_seqs": 278, "length": 145, "gap_rates": [0.2733812949640288, 0.08633093525179857, 0.05755395683453238, 0.050359712230215826, 0.050359712230215826, 0.050359712230215826, 0.050359712230215826, 0.050359712230215826, 0.046762589928057555, 0.046762589928057555, 0.046762589928057555, 0.046762589928057555, 0.046762589928057555, 0.046762589928057555, 0.046762589928057555, 0.08633093525179857, 0.08633093525179857, 0.08992805755395683, 0.08992805755395683, 0.49640287769784175, 0.19784172661870503, 0.19784172661870503, 0.19424460431654678, 0.19424460431654678, 0.9244604316546763, 0.1906474820143885, 0.09352517985611511, 0.07913669064748201, 0.050359712230215826, 0.039568345323741004, 0.039568345323741004, 0.03597122302158273, 0.039568345323741004, 0.039568345323741004, 0.039568345323741004, 0.12589928057553956, 0.03597122302158273, 0.03597122302158273, 0.03237410071942446, 0.03237410071942446, 0.6187050359712231, 0.6151079136690647, 0.02158273381294964, 0.02158273381294964, 0.02158273381294964, 0.02158273381294964, 0.017985611510791366, 0.02158273381294964, 0.02158273381294964, 0.02158273381294964, 0.02158273381294964, 0.025179856115107913, 0.02877697841726619, 0.039568345323741004, 0.04316546762589928, 0.920863309352518, 0.04316546762589928, 0.03597122302158273, 0.046762589928057555, 0.03237410071942446, 0.02158273381294964, 0.025179856115107913, 0.025179856115107913, 0.02158273381294964, 0.02158273381294964, 0.02158273381294964, 0.02158273381294964, 0.02158273381294964, 0.02158273381294964, 0.017985611510791366, 0.01079136690647482, 0.01079136690647482, 0.014388489208633094, 0.014388489208633094, 0.014388489208633094, 0.014388489208633094, 0.01079136690647482, 0.01079136690647482, 0.01079136690647482, 0.01079136690647482, 0.01079136690647482, 0.01079136690647482, 0.01079136690647482, 0.014388489208633094, 0.017985611510791366, 0.017985611510791366, 0.014388489208633094, 0.014388489208633094, 0.017985611510791366, 0.017985611510791366, 0.017985611510791366, 0.025179856115107913, 0.02877697841726619, 0.7769784172661871, 0.7841726618705036, 0.7913669064748201, 0.8129496402877698, 0.841726618705036, 0.8669064748201439, 0.8741007194244604, 0.8884892086330936, 0.9064748201438849, 0.9172661870503597, 0.9028776978417267, 0.8884892086330936, 0.8669064748201439, 0.8633093525179856, 0.8237410071942446, 0.8129496402877698, 0.7913669064748201, 0.7841726618705036, 0.7769784172661871, 0.039568345323741004, 0.1079136690647482, 0.11870503597122302, 0.11870503597122302, 0.17266187050359713, 0.302158273381295, 0.28776978417266186, 0.14028776978417265, 0.7410071942446043, 0.8489208633093526, 0.9100719424460432, 0.9424460431654677, 0.9460431654676259, 0.9388489208633094, 0.8669064748201439, 0.7553956834532374, 0.7410071942446043, 0.11510791366906475, 0.21942446043165467, 0.16906474820143885, 0.03597122302158273, 0.03597122302158273, 0.03597122302158273, 0.03597122302158273, 0.03597122302158273, 0.03597122302158273, 0.03597122302158273, 0.03597122302158273, 0.03597122302158273, 0.039568345323741004, 0.04316546762589928, 0.22302158273381295, 0.8633093525179856], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/XdhC_C.gap.json b/pfam_gap_rates/XdhC_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e5707487dfb6005ef14d13e8d425401dbcb4256d
--- /dev/null
+++ b/pfam_gap_rates/XdhC_C.gap.json
@@ -0,0 +1 @@
+{"family": "XdhC_C", "n_seqs": 1231, "length": 162, "gap_rates": [0.1510966693744923, 0.04305442729488221, 0.03168155970755483, 0.02924451665312754, 0.025182778229082048, 0.025182778229082048, 0.024370430544272948, 0.022745735174654752, 0.022745735174654752, 0.022745735174654752, 0.022745735174654752, 0.022745735174654752, 0.022745735174654752, 0.021933387489845652, 0.021121039805036556, 0.020308692120227456, 0.021121039805036556, 0.020308692120227456, 0.020308692120227456, 0.020308692120227456, 0.020308692120227456, 0.020308692120227456, 0.020308692120227456, 0.020308692120227456, 0.020308692120227456, 0.021121039805036556, 0.025182778229082048, 0.021121039805036556, 0.021121039805036556, 0.021121039805036556, 0.021933387489845652, 0.9301380991064175, 0.025995125913891144, 0.11372867587327376, 0.08610885458976442, 0.8399675060926076, 0.8464662875710804, 0.851340373679935, 0.8813972380178716, 0.9390739236393176, 0.9488220958570268, 0.9082047116165719, 0.867587327376117, 0.8480909829406986, 0.8440292445166532, 0.8367181153533713, 0.07311129163281885, 0.15678310316815597, 0.14947197400487408, 0.1429731925264013, 0.1389114541023558, 0.14053614947197401, 0.1852152721364744, 0.190089358245329, 0.19983753046303818, 0.026807473598700244, 0.05848903330625508, 0.06336311941510966, 0.06661251015434606, 0.08367181153533712, 0.10560519902518278, 0.12753858651502845, 0.1502843216896832, 0.1965881397238018, 0.4841592201462226, 0.8521527213647441, 0.90089358245329, 0.8781478472786353, 0.7904142973192526, 0.2380178716490658, 0.17221770917952883, 0.13403736799350122, 0.11210398050365557, 0.0926076360682372, 0.08123476848090982, 0.06661251015434606, 0.05848903330625508, 0.050365556458164096, 0.017871649065800164, 0.016246953696181964, 0.017059301380991064, 0.016246953696181964, 0.015434606011372868, 0.012997562956945572, 0.012997562956945572, 0.015434606011372868, 0.015434606011372868, 0.03736799350121852, 0.024370430544272948, 0.012997562956945572, 0.012997562956945572, 0.01462225832656377, 0.012997562956945572, 0.012997562956945572, 0.012997562956945572, 0.01380991064175467, 0.01380991064175467, 0.01462225832656377, 0.01462225832656377, 0.017871649065800164, 0.8237205523964257, 0.015434606011372868, 0.015434606011372868, 0.015434606011372868, 0.015434606011372868, 0.015434606011372868, 0.01462225832656377, 0.01462225832656377, 0.012185215272136474, 0.010560519902518278, 0.010560519902518278, 0.010560519902518278, 0.011372867587327376, 0.011372867587327376, 0.016246953696181964, 0.016246953696181964, 0.017871649065800164, 0.012185215272136474, 0.012185215272136474, 0.012185215272136474, 0.01380991064175467, 0.01868399675060926, 0.020308692120227456, 0.08610885458976442, 0.06580016246953696, 0.06417546709991877, 0.9244516653127539, 0.03249390739236393, 0.03736799350121852, 0.04224207961007311, 0.0479285134037368, 0.043866774979691305, 0.04224207961007311, 0.03574329813160033, 0.021933387489845652, 0.017059301380991064, 0.01380991064175467, 0.01380991064175467, 0.015434606011372868, 0.015434606011372868, 0.015434606011372868, 0.016246953696181964, 0.017059301380991064, 0.017059301380991064, 0.8537774167343624, 0.017871649065800164, 0.017871649065800164, 0.01868399675060926, 0.01868399675060926, 0.01949634443541836, 0.01868399675060926, 0.01868399675060926, 0.01949634443541836, 0.01949634443541836, 0.01949634443541836, 0.01949634443541836, 0.020308692120227456, 0.020308692120227456, 0.021121039805036556, 0.025995125913891144, 0.034930950446791224, 0.10154346060113728], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/XisH.gap.json b/pfam_gap_rates/XisH.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ba58576bfb0b62e1c6e6e1efa9eb759cd98e62a1
--- /dev/null
+++ b/pfam_gap_rates/XisH.gap.json
@@ -0,0 +1 @@
+{"family": "XisH", "n_seqs": 158, "length": 135, "gap_rates": [0.3291139240506329, 0.3291139240506329, 0.14556962025316456, 0.14556962025316456, 0.14556962025316456, 0.12658227848101267, 0.12658227848101267, 0.12658227848101267, 0.12658227848101267, 0.12025316455696203, 0.11392405063291139, 0.10759493670886076, 0.10759493670886076, 0.10759493670886076, 0.10759493670886076, 0.10759493670886076, 0.10759493670886076, 0.10759493670886076, 0.10759493670886076, 0.10759493670886076, 0.10126582278481013, 0.10126582278481013, 0.0949367088607595, 0.08860759493670886, 0.08227848101265822, 0.08227848101265822, 0.08227848101265822, 0.08227848101265822, 0.08860759493670886, 0.0949367088607595, 0.10759493670886076, 0.10759493670886076, 0.11392405063291139, 0.9050632911392406, 0.11392405063291139, 0.10126582278481013, 0.10126582278481013, 0.10126582278481013, 0.10126582278481013, 0.10126582278481013, 0.10126582278481013, 0.10126582278481013, 0.10759493670886076, 0.10126582278481013, 0.11392405063291139, 0.10759493670886076, 0.10759493670886076, 0.11392405063291139, 0.10759493670886076, 0.10759493670886076, 0.10759493670886076, 0.10759493670886076, 0.11392405063291139, 0.11392405063291139, 0.11392405063291139, 0.11392405063291139, 0.11392405063291139, 0.11392405063291139, 0.11392405063291139, 0.12658227848101267, 0.13291139240506328, 0.13291139240506328, 0.13291139240506328, 0.13291139240506328, 0.13291139240506328, 0.13291139240506328, 0.13924050632911392, 0.13924050632911392, 0.12025316455696203, 0.12025316455696203, 0.12025316455696203, 0.12658227848101267, 0.12658227848101267, 0.12658227848101267, 0.12025316455696203, 0.11392405063291139, 0.11392405063291139, 0.10759493670886076, 0.11392405063291139, 0.11392405063291139, 0.12025316455696203, 0.12025316455696203, 0.12025316455696203, 0.12025316455696203, 0.12025316455696203, 0.12025316455696203, 0.12025316455696203, 0.11392405063291139, 0.12025316455696203, 0.12025316455696203, 0.12658227848101267, 0.12658227848101267, 0.12658227848101267, 0.12025316455696203, 0.11392405063291139, 0.11392405063291139, 0.11392405063291139, 0.12025316455696203, 0.12025316455696203, 0.12025316455696203, 0.12025316455696203, 0.12025316455696203, 0.12025316455696203, 0.12025316455696203, 0.12025316455696203, 0.12025316455696203, 0.12025316455696203, 0.12658227848101267, 0.12658227848101267, 0.12658227848101267, 0.12658227848101267, 0.13291139240506328, 0.13291139240506328, 0.13291139240506328, 0.13291139240506328, 0.13291139240506328, 0.13924050632911392, 0.13924050632911392, 0.14556962025316456, 0.1518987341772152, 0.1518987341772152, 0.1518987341772152, 0.15822784810126583, 0.15822784810126583, 0.16455696202531644, 0.16455696202531644, 0.17088607594936708, 0.17721518987341772, 0.18354430379746836, 0.189873417721519, 0.1962025316455696, 0.21518987341772153, 0.22151898734177214, 0.2468354430379747, 0.6582278481012658], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/YHYH.gap.json b/pfam_gap_rates/YHYH.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d7d241dc39e3a75104164f14777733275c7498dc
--- /dev/null
+++ b/pfam_gap_rates/YHYH.gap.json
@@ -0,0 +1 @@
+{"family": "YHYH", "n_seqs": 231, "length": 260, "gap_rates": [0.8051948051948052, 0.48917748917748916, 0.36796536796536794, 0.3246753246753247, 0.31601731601731603, 0.3116883116883117, 0.30735930735930733, 0.30735930735930733, 0.30735930735930733, 0.30303030303030304, 0.2987012987012987, 0.2857142857142857, 0.30735930735930733, 0.8961038961038961, 0.9047619047619048, 0.8658008658008658, 0.26406926406926406, 0.26406926406926406, 0.26406926406926406, 0.2597402597402597, 0.2510822510822511, 0.23376623376623376, 0.47619047619047616, 0.2510822510822511, 0.18181818181818182, 0.15584415584415584, 0.13852813852813853, 0.13852813852813853, 0.13852813852813853, 0.13852813852813853, 0.13852813852813853, 0.13852813852813853, 0.1341991341991342, 0.1341991341991342, 0.5281385281385281, 0.1341991341991342, 0.1341991341991342, 0.1341991341991342, 0.1341991341991342, 0.13852813852813853, 0.14285714285714285, 0.1471861471861472, 0.15584415584415584, 0.5324675324675324, 0.5541125541125541, 0.5714285714285714, 0.8874458874458875, 0.9177489177489178, 0.9437229437229437, 0.922077922077922, 0.9047619047619048, 0.8484848484848485, 0.6363636363636364, 0.6796536796536796, 0.645021645021645, 0.6666666666666666, 0.5974025974025974, 0.8917748917748918, 0.9047619047619048, 0.9090909090909091, 0.9307359307359307, 0.948051948051948, 0.9393939393939394, 0.922077922077922, 0.9090909090909091, 0.9004329004329005, 0.8874458874458875, 0.5238095238095238, 0.4675324675324675, 0.27705627705627706, 0.27705627705627706, 0.24675324675324675, 0.22077922077922077, 0.2510822510822511, 0.9134199134199135, 0.5367965367965368, 0.2943722943722944, 0.24675324675324675, 0.15584415584415584, 0.1471861471861472, 0.12554112554112554, 0.12121212121212122, 0.11255411255411256, 0.11255411255411256, 0.11255411255411256, 0.10822510822510822, 0.10822510822510822, 0.10822510822510822, 0.10822510822510822, 0.10822510822510822, 0.15151515151515152, 0.935064935064935, 0.1471861471861472, 0.11255411255411256, 0.15584415584415584, 0.1038961038961039, 0.1038961038961039, 0.1038961038961039, 0.1038961038961039, 0.9307359307359307, 0.9393939393939394, 0.948051948051948, 0.948051948051948, 0.948051948051948, 0.948051948051948, 0.9393939393939394, 0.9393939393939394, 0.9307359307359307, 0.16883116883116883, 0.1341991341991342, 0.1341991341991342, 0.14285714285714285, 0.13852813852813853, 0.11255411255411256, 0.8528138528138528, 0.8658008658008658, 0.8787878787878788, 0.8831168831168831, 0.8831168831168831, 0.8961038961038961, 0.9134199134199135, 0.922077922077922, 0.935064935064935, 0.922077922077922, 0.9134199134199135, 0.9004329004329005, 0.8874458874458875, 0.8831168831168831, 0.8831168831168831, 0.8787878787878788, 0.8614718614718615, 0.8528138528138528, 0.2510822510822511, 0.22943722943722944, 0.22077922077922077, 0.9134199134199135, 0.8354978354978355, 0.2813852813852814, 0.24242424242424243, 0.22510822510822512, 0.15151515151515152, 0.17316017316017315, 0.19047619047619047, 0.5324675324675324, 0.19047619047619047, 0.14285714285714285, 0.13852813852813853, 0.10822510822510822, 0.10822510822510822, 0.10822510822510822, 0.10822510822510822, 0.10822510822510822, 0.10822510822510822, 0.10822510822510822, 0.10822510822510822, 0.10822510822510822, 0.10822510822510822, 0.10822510822510822, 0.10822510822510822, 0.10822510822510822, 0.19913419913419914, 0.6147186147186147, 0.6623376623376623, 0.6666666666666666, 0.70995670995671, 0.7575757575757576, 0.70995670995671, 0.7142857142857143, 0.7229437229437229, 0.7359307359307359, 0.7316017316017316, 0.7489177489177489, 0.7532467532467533, 0.7142857142857143, 0.7056277056277056, 0.7012987012987013, 0.7056277056277056, 0.7056277056277056, 0.7056277056277056, 0.70995670995671, 0.7186147186147186, 0.7186147186147186, 0.7229437229437229, 0.7186147186147186, 0.7705627705627706, 0.8571428571428571, 0.9004329004329005, 0.935064935064935, 0.948051948051948, 0.948051948051948, 0.948051948051948, 0.948051948051948, 0.9134199134199135, 0.8701298701298701, 0.8484848484848485, 0.7705627705627706, 0.7489177489177489, 0.7575757575757576, 0.7532467532467533, 0.7489177489177489, 0.7445887445887446, 0.9264069264069265, 0.7489177489177489, 0.7402597402597403, 0.7359307359307359, 0.7445887445887446, 0.9004329004329005, 0.8874458874458875, 0.7402597402597403, 0.7402597402597403, 0.7402597402597403, 0.7402597402597403, 0.7489177489177489, 0.7359307359307359, 0.7445887445887446, 0.7316017316017316, 0.7272727272727273, 0.7056277056277056, 0.7186147186147186, 0.696969696969697, 0.6926406926406926, 0.645021645021645, 0.6406926406926406, 0.6406926406926406, 0.6406926406926406, 0.6406926406926406, 0.6406926406926406, 0.6406926406926406, 0.6363636363636364, 0.6363636363636364, 0.6363636363636364, 0.6363636363636364, 0.7532467532467533, 0.7922077922077922, 0.7922077922077922, 0.7878787878787878, 0.7878787878787878, 0.7878787878787878, 0.6406926406926406, 0.6363636363636364, 0.6363636363636364, 0.6363636363636364, 0.6363636363636364, 0.6363636363636364, 0.6363636363636364, 0.6363636363636364, 0.6363636363636364, 0.6363636363636364, 0.6363636363636364, 0.6363636363636364, 0.645021645021645, 0.6493506493506493, 0.6666666666666666, 0.683982683982684, 0.6926406926406926, 0.7272727272727273, 0.7272727272727273, 0.7272727272727273, 0.7272727272727273, 0.7272727272727273], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Y_phosphatase.gap.json b/pfam_gap_rates/Y_phosphatase.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..661b49f057daee3e8cc77fd52f74d40ec61b0007
--- /dev/null
+++ b/pfam_gap_rates/Y_phosphatase.gap.json
@@ -0,0 +1 @@
+{"family": "Y_phosphatase", "n_seqs": 4683, "length": 280, "gap_rates": [0.5327781336749947, 0.48622677770659833, 0.3931240657698057, 0.35853085628870385, 0.33973948323724107, 0.33568225496476617, 0.3333333333333333, 0.32585949177877427, 0.3207345718556481, 0.3164638052530429, 0.3126201153106983, 0.3072816570574418, 0.2995942771727525, 0.29425581891949604, 0.2944693572496263, 0.29212043561819345, 0.29169335895793297, 0.29105274396754216, 0.2906256673072817, 0.2893444373265001, 0.6939995729233397, 0.9318812726884476, 0.7964979713858638, 0.6425368353619475, 0.4108477471706171, 0.40038436899423446, 0.3365364082852872, 0.3062139654067905, 0.30108904548366433, 0.39483237241084773, 0.2889173606662396, 0.2684176809737348, 0.9101003630151612, 0.8584240871236387, 0.2656416826820414, 0.2585949177877429, 0.25816784112748237, 0.25731368780696134, 0.25624599615631005, 0.2556053811659193, 0.2549647661755285, 0.9457612641469144, 0.9476831091180867, 0.9466154174674354, 0.9453341874866539, 0.2754644458680333, 0.27119367926542814, 0.2729019859064702, 0.29425581891949604, 0.8599188554345505, 0.2805893657911595, 0.9212043561819346, 0.9453341874866539, 0.8804185351270553, 0.25581891949604957, 0.2436472346786248, 0.24087123638693145, 0.24001708306641042, 0.2395900064061499, 0.23894939141575913, 0.23788169976510784, 0.23660046978432628, 0.23467862481315396, 0.23574631646380526, 0.23660046978432628, 0.23788169976510784, 0.2344650864830237, 0.2323297031817211, 0.2323297031817211, 0.2314755498612001, 0.23168908819133036, 0.2314755498612001, 0.23275677984198165, 0.2329703181721119, 0.22122571001494767, 0.22186632500533846, 0.22186632500533846, 0.22079863335468716, 0.22037155669442665, 0.21994448003416614, 0.21780909673286356, 0.21780909673286356, 0.21844971172325434, 0.21759555840273329, 0.2190903267136451, 0.21674140508221226, 0.216527866752082, 0.21674140508221226, 0.21738202007260304, 0.22015801836429638, 0.22037155669442665, 0.22122571001494767, 0.2432201580183643, 0.3346145633141149, 0.30108904548366433, 0.26393337604099937, 0.2447149263292761, 0.23617339312406577, 0.23425154815289345, 0.23126201153106982, 0.2282724749092462, 0.22805893657911594, 0.22848601323937648, 0.6418962203715567, 0.47512278453982487, 0.31881272688447576, 0.2564595344864403, 0.2504804612427931, 0.24386077300875508, 0.2427930813581038, 0.24129831304719196, 0.24087123638693145, 0.24023062139654067, 0.23681400811445655, 0.948750800768738, 0.23531923980354474, 0.23531923980354474, 0.23617339312406577, 0.23638693145419604, 0.2370275464445868, 0.23681400811445655, 0.9278240444159727, 0.9470424941276959, 0.8855434550501815, 0.8133674994661542, 0.38565022421524664, 0.2472773862908392, 0.24855861627162076, 0.592568866111467, 0.23638693145419604, 0.23126201153106982, 0.24151185137732223, 0.22336109331625026, 0.22207986333546872, 0.22079863335468716, 0.22079863335468716, 0.22037155669442665, 0.22079863335468716, 0.22058509502455692, 0.22015801836429638, 0.2190903267136451, 0.2190903267136451, 0.23126201153106982, 0.23382447149263294, 0.23489216314328423, 0.2395900064061499, 0.25218876788383515, 0.5116378389920991, 0.8735853085628871, 0.9152252829382874, 0.9291052743967542, 0.9436258808456118, 0.9455477258167841, 0.9342301943198804, 0.922272047832586, 0.9004911381592996, 0.8300234892163143, 0.5490070467648943, 0.3762545376895153, 0.2786675208199872, 0.21631432842195175, 0.21268417680973734, 0.20755925688661114, 0.20606448857569934, 0.20435618193465727, 0.20243433696348495, 0.20243433696348495, 0.20691864189622036, 0.19987187700192185, 0.20029895366218237, 0.1979500320307495, 0.9329489643390989, 0.1964552637198377, 0.19666880204996798, 0.19624172538970744, 0.20563741191543883, 0.2011531069827034, 0.9367926542814435, 0.22592355327781335, 0.2417253897074525, 0.19965833867179159, 0.1970958787102285, 0.19474695707879563, 0.19154388212684176, 0.190903267136451, 0.1898355754857997, 0.18940849882553917, 0.18855434550501815, 0.18962203715566944, 0.19004911381592995, 0.19068972880632074, 0.190903267136451, 0.19218449711723254, 0.1945334187486654, 0.1934657270980141, 0.7040358744394619, 0.8629083920563742, 0.8932308349348708, 0.9111680546658125, 0.9286781977364937, 0.9444800341661328, 0.9483237241084774, 0.9402092675635276, 0.9214178945120649, 0.9047619047619048, 0.8755071535340594, 0.8263933376040999, 0.6111467008327995, 0.39440529575058725, 0.3472133247918001, 0.266922912662823, 0.2517616912235746, 0.2005124919923126, 0.19068972880632074, 0.18919496049540893, 0.18834080717488788, 0.18705957719410635, 0.18684603886397608, 0.1862054238735853, 0.18599188554345505, 0.19218449711723254, 0.19218449711723254, 0.19154388212684176, 0.19261157377749305, 0.1930386504377536, 0.19325218876788383, 0.19410634208840488, 0.19410634208840488, 0.1938928037582746, 0.1945334187486654, 0.19367926542814434, 0.19431988041853512, 0.1945334187486654, 0.19474695707879563, 0.19367926542814434, 0.19474695707879563, 0.19431988041853512, 0.1964552637198377, 0.19688234038009822, 0.19816357036087978, 0.20029895366218237, 0.22442878496690155, 0.24919923126201154, 0.22869955156950672, 0.8650437753576767, 0.8992099081785181, 0.7853939782190903, 0.23126201153106982, 0.23638693145419604, 0.23617339312406577, 0.23403800982276318, 0.23062139654067906, 0.23318385650224216, 0.23361093316250267, 0.23595985479393553, 0.23638693145419604, 0.23574631646380526, 0.23574631646380526, 0.23766816143497757, 0.23894939141575913, 0.2395900064061499, 0.24108477471706172, 0.24300661968823403, 0.24386077300875508, 0.24556907964979713, 0.24706384796070896, 0.2515481528934444, 0.26436045270125985, 0.27781336749946617, 0.286781977364937, 0.29105274396754216, 0.29382874225923555, 0.2966047405509289, 0.3021567371343156, 0.30792227204783257, 0.3145419602818706, 0.3252188767883835, 0.3416613282084134, 0.48900277599829167, 0.8319453341874866], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/YabP.gap.json b/pfam_gap_rates/YabP.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..3b9ce3ff3d50dbd9a6e544a3cce9bec1cba680c2
--- /dev/null
+++ b/pfam_gap_rates/YabP.gap.json
@@ -0,0 +1 @@
+{"family": "YabP", "n_seqs": 795, "length": 66, "gap_rates": [0.3484276729559748, 0.17735849056603772, 0.0830188679245283, 0.07044025157232704, 0.05660377358490566, 0.04654088050314465, 0.04150943396226415, 0.03773584905660377, 0.025157232704402517, 0.013836477987421384, 0.0012578616352201257, 0.0012578616352201257, 0.0012578616352201257, 0.0012578616352201257, 0.0012578616352201257, 0.0012578616352201257, 0.0012578616352201257, 0.0012578616352201257, 0.0012578616352201257, 0.0012578616352201257, 0.0012578616352201257, 0.0012578616352201257, 0.0012578616352201257, 0.0012578616352201257, 0.0012578616352201257, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0037735849056603774, 0.005031446540880503, 0.006289308176100629, 0.006289308176100629, 0.0025157232704402514, 0.0012578616352201257, 0.0012578616352201257, 0.0012578616352201257, 0.0012578616352201257, 0.0012578616352201257, 0.0012578616352201257, 0.0025157232704402514, 0.0012578616352201257, 0.0012578616352201257, 0.0012578616352201257, 0.0012578616352201257, 0.0012578616352201257, 0.0012578616352201257, 0.0012578616352201257, 0.49433962264150944, 0.4930817610062893, 0.0012578616352201257, 0.0012578616352201257, 0.0012578616352201257, 0.0012578616352201257, 0.0025157232704402514, 0.0025157232704402514, 0.0025157232704402514, 0.0037735849056603774, 0.0037735849056603774, 0.0037735849056603774, 0.005031446540880503, 0.007547169811320755, 0.00880503144654088, 0.06289308176100629, 0.1119496855345912], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/YbaB_DNA_bd.gap.json b/pfam_gap_rates/YbaB_DNA_bd.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..37c7fb9fc97f64825af6e213a7d8de26e97a1586
--- /dev/null
+++ b/pfam_gap_rates/YbaB_DNA_bd.gap.json
@@ -0,0 +1 @@
+{"family": "YbaB_DNA_bd", "n_seqs": 2132, "length": 92, "gap_rates": [0.424484052532833, 0.20590994371482177, 0.1477485928705441, 0.10272045028142589, 0.08020637898686679, 0.06566604127579738, 0.054878048780487805, 0.04455909943714822, 0.03283302063789869, 0.02954971857410882, 0.02298311444652908, 0.021575984990619138, 0.016885553470919325, 0.0150093808630394, 0.01172607879924953, 0.010318949343339587, 0.008911819887429643, 0.008442776735459663, 0.007035647279549718, 0.006097560975609756, 0.006097560975609756, 0.005628517823639775, 0.005159474671669793, 0.004690431519699813, 0.004690431519699813, 0.004690431519699813, 0.004690431519699813, 0.01547842401500938, 0.04174484052532833, 0.07551594746716699, 0.05863039399624766, 0.004221388367729831, 0.004221388367729831, 0.004690431519699813, 0.004690431519699813, 0.003283302063789869, 0.003283302063789869, 0.00375234521575985, 0.00375234521575985, 0.003283302063789869, 0.00375234521575985, 0.003283302063789869, 0.0028142589118198874, 0.0028142589118198874, 0.0028142589118198874, 0.00375234521575985, 0.004221388367729831, 0.00375234521575985, 0.00375234521575985, 0.00375234521575985, 0.004690431519699813, 0.01172607879924953, 0.020637898686679174, 0.949343339587242, 0.22185741088180114, 0.10037523452157598, 0.1524390243902439, 0.06894934333958724, 0.0600375234521576, 0.054409005628517824, 0.028142589118198873, 0.02204502814258912, 0.01547842401500938, 0.01125703564727955, 0.004690431519699813, 0.001876172607879925, 0.0014071294559099437, 0.0014071294559099437, 0.001876172607879925, 0.001876172607879925, 0.001876172607879925, 0.001876172607879925, 0.001876172607879925, 0.001876172607879925, 0.001876172607879925, 0.001876172607879925, 0.003283302063789869, 0.00375234521575985, 0.004690431519699813, 0.008442776735459663, 0.009849906191369606, 0.012664165103189493, 0.023921200750469045, 0.03095684803001876, 0.038930581613508444, 0.04878048780487805, 0.06566604127579738, 0.10834896810506567, 0.15900562851782363, 0.2223264540337711, 0.27345215759849906, 0.7922138836772983], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/YbgT_YccB.gap.json b/pfam_gap_rates/YbgT_YccB.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..45fa5674e83aa9ed88506b21899b444a7a7aefdb
--- /dev/null
+++ b/pfam_gap_rates/YbgT_YccB.gap.json
@@ -0,0 +1 @@
+{"family": "YbgT_YccB", "n_seqs": 150, "length": 27, "gap_rates": [0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.006666666666666667, 0.6466666666666666], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/YdfA_immunity.gap.json b/pfam_gap_rates/YdfA_immunity.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..878cde8a8b3370dd97b5256a4606171f8b01794e
--- /dev/null
+++ b/pfam_gap_rates/YdfA_immunity.gap.json
@@ -0,0 +1 @@
+{"family": "YdfA_immunity", "n_seqs": 352, "length": 322, "gap_rates": [0.5056818181818182, 0.23011363636363635, 0.1278409090909091, 0.08522727272727272, 0.06818181818181818, 0.0625, 0.05965909090909091, 0.056818181818181816, 0.056818181818181816, 0.056818181818181816, 0.056818181818181816, 0.056818181818181816, 0.056818181818181816, 0.056818181818181816, 0.056818181818181816, 0.056818181818181816, 0.05965909090909091, 0.06534090909090909, 0.1903409090909091, 0.17897727272727273, 0.05113636363636364, 0.05113636363636364, 0.05113636363636364, 0.05113636363636364, 0.05113636363636364, 0.05113636363636364, 0.05113636363636364, 0.05113636363636364, 0.05113636363636364, 0.05113636363636364, 0.05113636363636364, 0.05113636363636364, 0.05113636363636364, 0.048295454545454544, 0.048295454545454544, 0.048295454545454544, 0.048295454545454544, 0.045454545454545456, 0.045454545454545456, 0.04261363636363636, 0.028409090909090908, 0.028409090909090908, 0.028409090909090908, 0.028409090909090908, 0.028409090909090908, 0.028409090909090908, 0.028409090909090908, 0.028409090909090908, 0.03125, 0.03125, 0.028409090909090908, 0.03125, 0.03125, 0.03125, 0.03125, 0.03125, 0.03125, 0.03125, 0.03125, 0.03125, 0.03125, 0.03125, 0.03125, 0.03125, 0.9488636363636364, 0.9488636363636364, 0.8181818181818182, 0.03125, 0.03125, 0.03125, 0.03125, 0.03125, 0.028409090909090908, 0.028409090909090908, 0.028409090909090908, 0.028409090909090908, 0.028409090909090908, 0.028409090909090908, 0.028409090909090908, 0.028409090909090908, 0.028409090909090908, 0.028409090909090908, 0.028409090909090908, 0.028409090909090908, 0.028409090909090908, 0.028409090909090908, 0.028409090909090908, 0.028409090909090908, 0.028409090909090908, 0.028409090909090908, 0.028409090909090908, 0.028409090909090908, 0.028409090909090908, 0.028409090909090908, 0.028409090909090908, 0.028409090909090908, 0.028409090909090908, 0.028409090909090908, 0.028409090909090908, 0.028409090909090908, 0.028409090909090908, 0.028409090909090908, 0.028409090909090908, 0.028409090909090908, 0.028409090909090908, 0.028409090909090908, 0.028409090909090908, 0.028409090909090908, 0.028409090909090908, 0.028409090909090908, 0.028409090909090908, 0.028409090909090908, 0.028409090909090908, 0.028409090909090908, 0.028409090909090908, 0.028409090909090908, 0.03125, 0.03125, 0.03125, 0.03125, 0.03125, 0.03125, 0.03125, 0.03125, 0.03125, 0.03125, 0.03125, 0.03125, 0.03125, 0.028409090909090908, 0.028409090909090908, 0.8636363636363636, 0.8636363636363636, 0.8806818181818182, 0.8892045454545454, 0.8806818181818182, 0.8636363636363636, 0.8636363636363636, 0.028409090909090908, 0.028409090909090908, 0.028409090909090908, 0.03125, 0.028409090909090908, 0.028409090909090908, 0.028409090909090908, 0.028409090909090908, 0.028409090909090908, 0.028409090909090908, 0.028409090909090908, 0.028409090909090908, 0.028409090909090908, 0.028409090909090908, 0.028409090909090908, 0.028409090909090908, 0.028409090909090908, 0.028409090909090908, 0.028409090909090908, 0.028409090909090908, 0.028409090909090908, 0.028409090909090908, 0.028409090909090908, 0.028409090909090908, 0.028409090909090908, 0.028409090909090908, 0.028409090909090908, 0.028409090909090908, 0.028409090909090908, 0.028409090909090908, 0.028409090909090908, 0.028409090909090908, 0.028409090909090908, 0.028409090909090908, 0.028409090909090908, 0.028409090909090908, 0.028409090909090908, 0.028409090909090908, 0.03125, 0.03125, 0.03125, 0.03125, 0.03125, 0.03125, 0.03125, 0.03125, 0.03125, 0.03125, 0.03125, 0.03125, 0.03125, 0.03125, 0.03125, 0.03125, 0.03125, 0.03125, 0.03125, 0.03125, 0.03125, 0.03125, 0.03125, 0.028409090909090908, 0.028409090909090908, 0.028409090909090908, 0.028409090909090908, 0.028409090909090908, 0.028409090909090908, 0.028409090909090908, 0.028409090909090908, 0.028409090909090908, 0.028409090909090908, 0.028409090909090908, 0.028409090909090908, 0.028409090909090908, 0.028409090909090908, 0.028409090909090908, 0.028409090909090908, 0.028409090909090908, 0.028409090909090908, 0.028409090909090908, 0.028409090909090908, 0.028409090909090908, 0.028409090909090908, 0.028409090909090908, 0.028409090909090908, 0.028409090909090908, 0.03409090909090909, 0.03409090909090909, 0.03409090909090909, 0.03409090909090909, 0.03409090909090909, 0.03409090909090909, 0.03409090909090909, 0.03409090909090909, 0.03409090909090909, 0.03409090909090909, 0.03409090909090909, 0.03409090909090909, 0.03125, 0.03125, 0.03125, 0.03125, 0.03125, 0.03125, 0.03125, 0.03125, 0.03125, 0.03125, 0.03125, 0.03125, 0.03125, 0.03125, 0.03125, 0.028409090909090908, 0.028409090909090908, 0.03125, 0.03125, 0.03125, 0.03125, 0.03125, 0.02556818181818182, 0.02556818181818182, 0.02556818181818182, 0.02556818181818182, 0.02556818181818182, 0.02556818181818182, 0.028409090909090908, 0.028409090909090908, 0.08238636363636363, 0.08238636363636363, 0.08238636363636363, 0.08522727272727272, 0.08238636363636363, 0.08238636363636363, 0.08238636363636363, 0.02556818181818182, 0.02556818181818182, 0.02556818181818182, 0.02556818181818182, 0.02556818181818182, 0.02556818181818182, 0.02556818181818182, 0.02556818181818182, 0.02556818181818182, 0.02556818181818182, 0.02556818181818182, 0.02556818181818182, 0.02556818181818182, 0.02556818181818182, 0.02556818181818182, 0.02556818181818182, 0.02556818181818182, 0.02556818181818182, 0.02556818181818182, 0.02556818181818182, 0.02556818181818182, 0.02556818181818182, 0.02556818181818182, 0.02556818181818182, 0.02556818181818182, 0.045454545454545456, 0.05965909090909091, 0.06534090909090909, 0.06818181818181818, 0.07386363636363637, 0.07102272727272728, 0.07102272727272728, 0.07102272727272728, 0.07102272727272728, 0.07102272727272728, 0.07102272727272728, 0.07386363636363637, 0.07386363636363637, 0.07386363636363637, 0.07386363636363637, 0.07386363636363637, 0.07386363636363637, 0.07386363636363637, 0.07386363636363637, 0.07386363636363637, 0.07386363636363637, 0.07386363636363637, 0.08806818181818182, 0.5170454545454546], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/YhhN.gap.json b/pfam_gap_rates/YhhN.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..568ca1eb4b601236b3a5758f94a03c3fd1d733b1
--- /dev/null
+++ b/pfam_gap_rates/YhhN.gap.json
@@ -0,0 +1 @@
+{"family": "YhhN", "n_seqs": 554, "length": 223, "gap_rates": [0.9476534296028881, 0.5541516245487365, 0.36823104693140796, 0.2364620938628159, 0.18411552346570398, 0.15162454873646208, 0.1263537906137184, 0.10469314079422383, 0.10108303249097472, 0.09566787003610108, 0.09025270758122744, 0.08303249097472924, 0.0812274368231047, 0.08303249097472924, 0.0812274368231047, 0.0812274368231047, 0.0812274368231047, 0.08844765342960288, 0.09025270758122744, 0.7454873646209387, 0.9151624548736462, 0.9494584837545126, 0.9350180505415162, 0.8068592057761733, 0.6245487364620939, 0.4566787003610108, 0.34296028880866425, 0.23826714801444043, 0.18592057761732853, 0.17148014440433212, 0.08483754512635379, 0.06859205776173286, 0.06678700361010831, 0.0631768953068592, 0.05956678700361011, 0.05776173285198556, 0.05776173285198556, 0.9097472924187726, 0.05595667870036101, 0.05595667870036101, 0.05595667870036101, 0.05415162454873646, 0.052346570397111915, 0.05054151624548736, 0.05054151624548736, 0.05054151624548736, 0.05054151624548736, 0.05054151624548736, 0.05054151624548736, 0.05054151624548736, 0.05054151624548736, 0.05054151624548736, 0.05415162454873646, 0.8158844765342961, 0.8898916967509025, 0.9115523465703971, 0.8971119133574007, 0.8844765342960289, 0.6823104693140795, 0.44584837545126355, 0.2815884476534296, 0.14981949458483754, 0.10830324909747292, 0.0703971119133574, 0.04151624548736462, 0.039711191335740074, 0.036101083032490974, 0.036101083032490974, 0.036101083032490974, 0.032490974729241874, 0.032490974729241874, 0.030685920577617327, 0.032490974729241874, 0.032490974729241874, 0.03429602888086643, 0.03429602888086643, 0.032490974729241874, 0.032490974729241874, 0.032490974729241874, 0.032490974729241874, 0.032490974729241874, 0.03429602888086643, 0.03429602888086643, 0.036101083032490974, 0.039711191335740074, 0.7310469314079422, 0.8664259927797834, 0.9332129963898917, 0.9115523465703971, 0.8267148014440433, 0.6624548736462094, 0.49458483754512633, 0.351985559566787, 0.2292418772563177, 0.17689530685920576, 0.05415162454873646, 0.048736462093862815, 0.04332129963898917, 0.04151624548736462, 0.04151624548736462, 0.04151624548736462, 0.04151624548736462, 0.04151624548736462, 0.04151624548736462, 0.04151624548736462, 0.039711191335740074, 0.04151624548736462, 0.036101083032490974, 0.036101083032490974, 0.03429602888086643, 0.03790613718411552, 0.039711191335740074, 0.08303249097472924, 0.0631768953068592, 0.05054151624548736, 0.039711191335740074, 0.039711191335740074, 0.9404332129963899, 0.907942238267148, 0.039711191335740074, 0.03790613718411552, 0.039711191335740074, 0.048736462093862815, 0.039711191335740074, 0.7563176895306859, 0.8429602888086642, 0.9314079422382672, 0.8790613718411552, 0.8158844765342961, 0.631768953068592, 0.052346570397111915, 0.04693140794223827, 0.8014440433212996, 0.04151624548736462, 0.039711191335740074, 0.036101083032490974, 0.03429602888086643, 0.032490974729241874, 0.030685920577617327, 0.030685920577617327, 0.02888086642599278, 0.02888086642599278, 0.02888086642599278, 0.02888086642599278, 0.030685920577617327, 0.032490974729241874, 0.032490974729241874, 0.02888086642599278, 0.02888086642599278, 0.02707581227436823, 0.02707581227436823, 0.02707581227436823, 0.16787003610108303, 0.37545126353790614, 0.4151624548736462, 0.4584837545126354, 0.7490974729241877, 0.8916967509025271, 0.9368231046931408, 0.9133574007220217, 0.8194945848375451, 0.723826714801444, 0.4584837545126354, 0.3194945848375451, 0.2833935018050541, 0.26173285198555957, 0.09025270758122744, 0.05415162454873646, 0.036101083032490974, 0.036101083032490974, 0.036101083032490974, 0.032490974729241874, 0.032490974729241874, 0.032490974729241874, 0.032490974729241874, 0.032490974729241874, 0.032490974729241874, 0.032490974729241874, 0.036101083032490974, 0.03429602888086643, 0.03429602888086643, 0.03429602888086643, 0.03429602888086643, 0.03429602888086643, 0.03429602888086643, 0.03429602888086643, 0.03429602888086643, 0.04151624548736462, 0.036101083032490974, 0.03429602888086643, 0.03429602888086643, 0.03429602888086643, 0.036101083032490974, 0.7382671480144405, 0.8537906137184116, 0.8953068592057761, 0.8303249097472925, 0.6137184115523465, 0.04151624548736462, 0.03790613718411552, 0.04332129963898917, 0.04512635379061372, 0.04332129963898917, 0.04693140794223827, 0.05054151624548736, 0.052346570397111915, 0.05054151624548736, 0.05415162454873646, 0.05054151624548736, 0.05054151624548736, 0.052346570397111915, 0.052346570397111915, 0.05415162454873646, 0.05776173285198556, 0.05595667870036101, 0.05776173285198556, 0.05776173285198556, 0.061371841155234655, 0.061371841155234655, 0.07581227436823104, 0.11010830324909747, 0.18050541516245489, 0.6498194945848376], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/YlqD.gap.json b/pfam_gap_rates/YlqD.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..35c9201d40cac4c14eeac1b2a052ade814817207
--- /dev/null
+++ b/pfam_gap_rates/YlqD.gap.json
@@ -0,0 +1 @@
+{"family": "YlqD", "n_seqs": 155, "length": 140, "gap_rates": [0.2, 0.07096774193548387, 0.04516129032258064, 0.03870967741935484, 0.03870967741935484, 0.03870967741935484, 0.03870967741935484, 0.03870967741935484, 0.03870967741935484, 0.03870967741935484, 0.03870967741935484, 0.03870967741935484, 0.03870967741935484, 0.03870967741935484, 0.03870967741935484, 0.03870967741935484, 0.03870967741935484, 0.03870967741935484, 0.03870967741935484, 0.03870967741935484, 0.03225806451612903, 0.03225806451612903, 0.03225806451612903, 0.03225806451612903, 0.03225806451612903, 0.03225806451612903, 0.03225806451612903, 0.03225806451612903, 0.03225806451612903, 0.03225806451612903, 0.03225806451612903, 0.03225806451612903, 0.03225806451612903, 0.03225806451612903, 0.03225806451612903, 0.03225806451612903, 0.03225806451612903, 0.03225806451612903, 0.03225806451612903, 0.03225806451612903, 0.03225806451612903, 0.03870967741935484, 0.03870967741935484, 0.03870967741935484, 0.03870967741935484, 0.04516129032258064, 0.06451612903225806, 0.06451612903225806, 0.04516129032258064, 0.04516129032258064, 0.08387096774193549, 0.0967741935483871, 0.38064516129032255, 0.36129032258064514, 0.34838709677419355, 0.3225806451612903, 0.632258064516129, 0.6451612903225806, 0.6645161290322581, 0.6774193548387096, 0.6709677419354839, 0.6516129032258065, 0.6387096774193548, 0.6258064516129033, 0.06451612903225806, 0.05806451612903226, 0.05806451612903226, 0.05161290322580645, 0.05161290322580645, 0.05161290322580645, 0.05161290322580645, 0.04516129032258064, 0.04516129032258064, 0.04516129032258064, 0.04516129032258064, 0.04516129032258064, 0.04516129032258064, 0.03870967741935484, 0.03870967741935484, 0.03870967741935484, 0.03870967741935484, 0.03870967741935484, 0.03870967741935484, 0.03870967741935484, 0.03870967741935484, 0.03870967741935484, 0.03870967741935484, 0.03870967741935484, 0.03870967741935484, 0.03225806451612903, 0.03225806451612903, 0.03225806451612903, 0.03225806451612903, 0.03225806451612903, 0.03225806451612903, 0.03225806451612903, 0.03225806451612903, 0.03225806451612903, 0.03225806451612903, 0.03225806451612903, 0.03225806451612903, 0.03225806451612903, 0.03225806451612903, 0.03225806451612903, 0.03225806451612903, 0.03225806451612903, 0.03225806451612903, 0.03225806451612903, 0.03225806451612903, 0.03225806451612903, 0.03225806451612903, 0.03225806451612903, 0.03225806451612903, 0.03225806451612903, 0.03225806451612903, 0.03225806451612903, 0.03225806451612903, 0.03225806451612903, 0.03225806451612903, 0.03225806451612903, 0.03225806451612903, 0.03225806451612903, 0.06451612903225806, 0.04516129032258064, 0.6516129032258065, 0.03225806451612903, 0.03870967741935484, 0.03870967741935484, 0.03870967741935484, 0.03870967741935484, 0.03870967741935484, 0.03870967741935484, 0.04516129032258064, 0.04516129032258064, 0.04516129032258064, 0.04516129032258064, 0.04516129032258064, 0.04516129032258064, 0.05161290322580645, 0.13548387096774195], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/YodL.gap.json b/pfam_gap_rates/YodL.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..3bdea9a87eb80ad0886208990d723b938d3fc54f
--- /dev/null
+++ b/pfam_gap_rates/YodL.gap.json
@@ -0,0 +1 @@
+{"family": "YodL", "n_seqs": 175, "length": 110, "gap_rates": [0.6, 0.09714285714285714, 0.09714285714285714, 0.09714285714285714, 0.09714285714285714, 0.09714285714285714, 0.09714285714285714, 0.09714285714285714, 0.09714285714285714, 0.09714285714285714, 0.7428571428571429, 0.3942857142857143, 0.2914285714285714, 0.09714285714285714, 0.09714285714285714, 0.09142857142857143, 0.08571428571428572, 0.08571428571428572, 0.08571428571428572, 0.08571428571428572, 0.08571428571428572, 0.08571428571428572, 0.08571428571428572, 0.08571428571428572, 0.08571428571428572, 0.08, 0.08, 0.10857142857142857, 0.10285714285714286, 0.12, 0.9028571428571428, 0.08, 0.06285714285714286, 0.005714285714285714, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.6685714285714286, 0.7657142857142857, 0.9314285714285714, 0.9142857142857143, 0.6685714285714286, 0.6685714285714286, 0.18285714285714286, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.005714285714285714, 0.0, 0.9085714285714286, 0.88, 0.0, 0.02857142857142857, 0.017142857142857144, 0.017142857142857144, 0.017142857142857144, 0.017142857142857144, 0.017142857142857144, 0.017142857142857144, 0.017142857142857144, 0.011428571428571429, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.005714285714285714, 0.02857142857142857, 0.02857142857142857, 0.02857142857142857, 0.022857142857142857, 0.011428571428571429, 0.011428571428571429, 0.011428571428571429, 0.017142857142857144, 0.017142857142857144, 0.011428571428571429, 0.03428571428571429, 0.045714285714285714, 0.045714285714285714, 0.045714285714285714, 0.05714285714285714, 0.05714285714285714, 0.07428571428571429, 0.07428571428571429, 0.08, 0.3028571428571429, 0.21142857142857144, 0.21714285714285714], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/YopX.gap.json b/pfam_gap_rates/YopX.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d1c1e3f615df8f22daf8ba6cbaec44808012e534
--- /dev/null
+++ b/pfam_gap_rates/YopX.gap.json
@@ -0,0 +1 @@
+{"family": "YopX", "n_seqs": 146, "length": 170, "gap_rates": [0.5821917808219178, 0.4794520547945205, 0.4520547945205479, 0.4520547945205479, 0.4589041095890411, 0.4452054794520548, 0.4452054794520548, 0.4520547945205479, 0.4520547945205479, 0.4383561643835616, 0.4383561643835616, 0.4383561643835616, 0.4452054794520548, 0.4383561643835616, 0.4315068493150685, 0.4383561643835616, 0.4520547945205479, 0.4315068493150685, 0.4315068493150685, 0.4452054794520548, 0.4315068493150685, 0.9246575342465754, 0.4246575342465753, 0.410958904109589, 0.3972602739726027, 0.4041095890410959, 0.3904109589041096, 0.4041095890410959, 0.3972602739726027, 0.3904109589041096, 0.4041095890410959, 0.3904109589041096, 0.3835616438356164, 0.3904109589041096, 0.3767123287671233, 0.3493150684931507, 0.3356164383561644, 0.3356164383561644, 0.4520547945205479, 0.4178082191780822, 0.3767123287671233, 0.3698630136986301, 0.3698630136986301, 0.5, 0.4931506849315068, 0.5, 0.4520547945205479, 0.4931506849315068, 0.4383561643835616, 0.7671232876712328, 0.863013698630137, 0.9178082191780822, 0.9315068493150684, 0.9246575342465754, 0.8972602739726028, 0.8287671232876712, 0.7602739726027398, 0.3082191780821918, 0.1643835616438356, 0.04794520547945205, 0.0273972602739726, 0.0136986301369863, 0.00684931506849315, 0.00684931506849315, 0.00684931506849315, 0.00684931506849315, 0.0, 0.0, 0.00684931506849315, 0.00684931506849315, 0.00684931506849315, 0.00684931506849315, 0.00684931506849315, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0136986301369863, 0.0136986301369863, 0.0, 0.0, 0.0821917808219178, 0.06164383561643835, 0.0273972602739726, 0.0136986301369863, 0.02054794520547945, 0.00684931506849315, 0.0547945205479452, 0.136986301369863, 0.2808219178082192, 0.4726027397260274, 0.589041095890411, 0.6917808219178082, 0.726027397260274, 0.7945205479452054, 0.8424657534246576, 0.9041095890410958, 0.9041095890410958, 0.9041095890410958, 0.9178082191780822, 0.9383561643835616, 0.9452054794520548, 0.9315068493150684, 0.9041095890410958, 0.9041095890410958, 0.9041095890410958, 0.8835616438356164, 0.8013698630136986, 0.7534246575342466, 0.6917808219178082, 0.636986301369863, 0.5273972602739726, 0.410958904109589, 0.1506849315068493, 0.0821917808219178, 0.06164383561643835, 0.0410958904109589, 0.04794520547945205, 0.0410958904109589, 0.04794520547945205, 0.0410958904109589, 0.06164383561643835, 0.0684931506849315, 0.04794520547945205, 0.03424657534246575, 0.04794520547945205, 0.4246575342465753, 0.7054794520547946, 0.7945205479452054, 0.8493150684931506, 0.8972602739726028, 0.9383561643835616, 0.910958904109589, 0.8835616438356164, 0.8013698630136986, 0.7671232876712328, 0.6575342465753424, 0.3904109589041096, 0.3424657534246575, 0.21232876712328766, 0.17123287671232876, 0.1506849315068493, 0.04794520547945205, 0.04794520547945205, 0.03424657534246575, 0.0410958904109589, 0.0410958904109589, 0.03424657534246575, 0.07534246575342465, 0.06164383561643835, 0.0410958904109589, 0.03424657534246575, 0.0410958904109589, 0.04794520547945205, 0.03424657534246575, 0.04794520547945205, 0.03424657534246575, 0.03424657534246575, 0.0410958904109589, 0.0410958904109589, 0.04794520547945205, 0.04794520547945205, 0.06164383561643835, 0.10273972602739725, 0.14383561643835616, 0.1780821917808219, 0.19863013698630136, 0.2465753424657534, 0.4657534246575342], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/YqaJ.gap.json b/pfam_gap_rates/YqaJ.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..261f85b9a75f9e1d28e539f75782c3621c388db7
--- /dev/null
+++ b/pfam_gap_rates/YqaJ.gap.json
@@ -0,0 +1 @@
+{"family": "YqaJ", "n_seqs": 648, "length": 186, "gap_rates": [0.6033950617283951, 0.29012345679012347, 0.2808641975308642, 0.27469135802469136, 0.25925925925925924, 0.2361111111111111, 0.2345679012345679, 0.21604938271604937, 0.20833333333333334, 0.2006172839506173, 0.19753086419753085, 0.19753086419753085, 0.19598765432098766, 0.19598765432098766, 0.19598765432098766, 0.19598765432098766, 0.19290123456790123, 0.2361111111111111, 0.21141975308641975, 0.20987654320987653, 0.9027777777777778, 0.20987654320987653, 0.20679012345679013, 0.3132716049382716, 0.2839506172839506, 0.21296296296296297, 0.2006172839506173, 0.8734567901234568, 0.18518518518518517, 0.17746913580246915, 0.1728395061728395, 0.1743827160493827, 0.1743827160493827, 0.1728395061728395, 0.1728395061728395, 0.17592592592592593, 0.1743827160493827, 0.1743827160493827, 0.1882716049382716, 0.6203703703703703, 0.6203703703703703, 0.7422839506172839, 0.7361111111111112, 0.7361111111111112, 0.7114197530864198, 0.47685185185185186, 0.3904320987654321, 0.26851851851851855, 0.19598765432098766, 0.12962962962962962, 0.12191358024691358, 0.11265432098765432, 0.10185185185185185, 0.09722222222222222, 0.07716049382716049, 0.06635802469135803, 0.06172839506172839, 0.06172839506172839, 0.06172839506172839, 0.05864197530864197, 0.05246913580246913, 0.05246913580246913, 0.05401234567901234, 0.05401234567901234, 0.047839506172839504, 0.046296296296296294, 0.04938271604938271, 0.05092592592592592, 0.04938271604938271, 0.04938271604938271, 0.04938271604938271, 0.04938271604938271, 0.046296296296296294, 0.044753086419753084, 0.8719135802469136, 0.8919753086419753, 0.9027777777777778, 0.875, 0.8410493827160493, 0.11419753086419752, 0.08796296296296297, 0.05401234567901234, 0.05555555555555555, 0.05709876543209876, 0.904320987654321, 0.9351851851851852, 0.9274691358024691, 0.8950617283950617, 0.5015432098765432, 0.12654320987654322, 0.05092592592592592, 0.044753086419753084, 0.043209876543209874, 0.041666666666666664, 0.040123456790123455, 0.8888888888888888, 0.8842592592592593, 0.16049382716049382, 0.06481481481481481, 0.05092592592592592, 0.032407407407407406, 0.027777777777777776, 0.023148148148148147, 0.023148148148148147, 0.023148148148148147, 0.026234567901234566, 0.026234567901234566, 0.027777777777777776, 0.032407407407407406, 0.032407407407407406, 0.035493827160493825, 0.36728395061728397, 0.35648148148148145, 0.41358024691358025, 0.38271604938271603, 0.3487654320987654, 0.30092592592592593, 0.9367283950617284, 0.9429012345679012, 0.9259259259259259, 0.8472222222222222, 0.7700617283950617, 0.4660493827160494, 0.1697530864197531, 0.09104938271604938, 0.08487654320987655, 0.044753086419753084, 0.043209876543209874, 0.043209876543209874, 0.043209876543209874, 0.044753086419753084, 0.046296296296296294, 0.05246913580246913, 0.06172839506172839, 0.4351851851851852, 0.4444444444444444, 0.2191358024691358, 0.2037037037037037, 0.1882716049382716, 0.25308641975308643, 0.21296296296296297, 0.21141975308641975, 0.5555555555555556, 0.45524691358024694, 0.3595679012345679, 0.19598765432098766, 0.6527777777777778, 0.8827160493827161, 0.9259259259259259, 0.8225308641975309, 0.470679012345679, 0.18518518518518517, 0.17901234567901234, 0.7407407407407407, 0.7484567901234568, 0.7608024691358025, 0.7685185185185185, 0.8024691358024691, 0.8348765432098766, 0.9120370370370371, 0.9475308641975309, 0.8672839506172839, 0.8117283950617284, 0.7839506172839507, 0.7638888888888888, 0.7561728395061729, 0.7453703703703703, 0.7407407407407407, 0.17746913580246915, 0.17592592592592593, 0.17592592592592593, 0.1743827160493827, 0.17592592592592593, 0.17901234567901234, 0.17901234567901234, 0.18209876543209877, 0.1867283950617284, 0.18981481481481483, 0.19444444444444445, 0.2006172839506173, 0.20833333333333334, 0.2330246913580247, 0.2638888888888889, 0.30709876543209874, 0.45987654320987653, 0.8672839506172839], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/YqgF.gap.json b/pfam_gap_rates/YqgF.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..3a670ac96cd1a7bba8608cb195df8a44c55b92c8
--- /dev/null
+++ b/pfam_gap_rates/YqgF.gap.json
@@ -0,0 +1 @@
+{"family": "YqgF", "n_seqs": 296, "length": 191, "gap_rates": [0.8817567567567568, 0.5168918918918919, 0.39864864864864863, 0.2905405405405405, 0.22972972972972974, 0.17229729729729729, 0.1554054054054054, 0.1554054054054054, 0.15202702702702703, 0.15202702702702703, 0.14527027027027026, 0.13851351351351351, 0.13513513513513514, 0.13851351351351351, 0.125, 0.12837837837837837, 0.652027027027027, 0.5033783783783784, 0.28040540540540543, 0.13851351351351351, 0.12162162162162163, 0.11148648648648649, 0.10135135135135136, 0.0945945945945946, 0.10135135135135136, 0.0945945945945946, 0.08783783783783784, 0.08783783783783784, 0.09121621621621621, 0.08783783783783784, 0.08783783783783784, 0.08783783783783784, 0.08783783783783784, 0.0945945945945946, 0.08783783783783784, 0.08783783783783784, 0.08783783783783784, 0.08783783783783784, 0.08445945945945946, 0.47635135135135137, 0.5033783783783784, 0.5675675675675675, 0.7466216216216216, 0.7027027027027027, 0.5506756756756757, 0.4831081081081081, 0.46959459459459457, 0.26013513513513514, 0.13175675675675674, 0.11824324324324324, 0.12162162162162163, 0.09797297297297297, 0.0945945945945946, 0.08783783783783784, 0.08445945945945946, 0.08445945945945946, 0.07432432432432433, 0.09121621621621621, 0.0777027027027027, 0.0777027027027027, 0.08108108108108109, 0.07432432432432433, 0.3141891891891892, 0.30405405405405406, 0.30405405405405406, 0.30067567567567566, 0.06418918918918919, 0.06418918918918919, 0.06418918918918919, 0.06418918918918919, 0.06418918918918919, 0.057432432432432436, 0.057432432432432436, 0.057432432432432436, 0.057432432432432436, 0.057432432432432436, 0.057432432432432436, 0.05405405405405406, 0.05405405405405406, 0.05067567567567568, 0.05067567567567568, 0.05405405405405406, 0.05067567567567568, 0.05067567567567568, 0.0472972972972973, 0.0472972972972973, 0.0472972972972973, 0.0472972972972973, 0.04391891891891892, 0.04391891891891892, 0.0472972972972973, 0.0472972972972973, 0.05067567567567568, 0.05067567567567568, 0.05067567567567568, 0.05405405405405406, 0.9459459459459459, 0.9493243243243243, 0.9459459459459459, 0.9459459459459459, 0.057432432432432436, 0.06418918918918919, 0.9222972972972973, 0.9256756756756757, 0.9324324324324325, 0.9290540540540541, 0.9256756756756757, 0.9222972972972973, 0.07094594594594594, 0.8682432432432432, 0.8817567567567568, 0.8817567567567568, 0.8851351351351351, 0.8986486486486487, 0.8885135135135135, 0.8851351351351351, 0.8817567567567568, 0.875, 0.8682432432432432, 0.07094594594594594, 0.8682432432432432, 0.9324324324324325, 0.6013513513513513, 0.11486486486486487, 0.902027027027027, 0.902027027027027, 0.9256756756756757, 0.9290540540540541, 0.9358108108108109, 0.9256756756756757, 0.9087837837837838, 0.902027027027027, 0.902027027027027, 0.0945945945945946, 0.08108108108108109, 0.06418918918918919, 0.07432432432432433, 0.07094594594594594, 0.060810810810810814, 0.05067567567567568, 0.04054054054054054, 0.04054054054054054, 0.04054054054054054, 0.04054054054054054, 0.04054054054054054, 0.04054054054054054, 0.04054054054054054, 0.04054054054054054, 0.04054054054054054, 0.04054054054054054, 0.04054054054054054, 0.04391891891891892, 0.04054054054054054, 0.04054054054054054, 0.04054054054054054, 0.04054054054054054, 0.04054054054054054, 0.04054054054054054, 0.04054054054054054, 0.04391891891891892, 0.0472972972972973, 0.05405405405405406, 0.060810810810810814, 0.060810810810810814, 0.060810810810810814, 0.060810810810810814, 0.07432432432432433, 0.060810810810810814, 0.060810810810810814, 0.06418918918918919, 0.06418918918918919, 0.06418918918918919, 0.06418918918918919, 0.06418918918918919, 0.06418918918918919, 0.06418918918918919, 0.06418918918918919, 0.06418918918918919, 0.06418918918918919, 0.06418918918918919, 0.06418918918918919, 0.07094594594594594, 0.07094594594594594, 0.07094594594594594, 0.08783783783783784, 0.08783783783783784, 0.0945945945945946, 0.10135135135135136, 0.12837837837837837, 0.16891891891891891, 0.6418918918918919], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/YqhG.gap.json b/pfam_gap_rates/YqhG.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d271ba35ac7bbbd2f88e4a2ac7992e3381fd4eea
--- /dev/null
+++ b/pfam_gap_rates/YqhG.gap.json
@@ -0,0 +1 @@
+{"family": "YqhG", "n_seqs": 122, "length": 275, "gap_rates": [0.3524590163934426, 0.3360655737704918, 0.3114754098360656, 0.30327868852459017, 0.30327868852459017, 0.30327868852459017, 0.29508196721311475, 0.27049180327868855, 0.27049180327868855, 0.26229508196721313, 0.26229508196721313, 0.2540983606557377, 0.2540983606557377, 0.2540983606557377, 0.2540983606557377, 0.2540983606557377, 0.2540983606557377, 0.2540983606557377, 0.2540983606557377, 0.2540983606557377, 0.2540983606557377, 0.26229508196721313, 0.26229508196721313, 0.2540983606557377, 0.2540983606557377, 0.26229508196721313, 0.2540983606557377, 0.2540983606557377, 0.2540983606557377, 0.2540983606557377, 0.2540983606557377, 0.2540983606557377, 0.2540983606557377, 0.2540983606557377, 0.2540983606557377, 0.2540983606557377, 0.2540983606557377, 0.2540983606557377, 0.2540983606557377, 0.2540983606557377, 0.2540983606557377, 0.2459016393442623, 0.2459016393442623, 0.2459016393442623, 0.2459016393442623, 0.2459016393442623, 0.2459016393442623, 0.2459016393442623, 0.2459016393442623, 0.2459016393442623, 0.2459016393442623, 0.2459016393442623, 0.2459016393442623, 0.2459016393442623, 0.2459016393442623, 0.2459016393442623, 0.2459016393442623, 0.2459016393442623, 0.2459016393442623, 0.2459016393442623, 0.2459016393442623, 0.2459016393442623, 0.2459016393442623, 0.2459016393442623, 0.2459016393442623, 0.2540983606557377, 0.2540983606557377, 0.2540983606557377, 0.27049180327868855, 0.27049180327868855, 0.27049180327868855, 0.26229508196721313, 0.29508196721311475, 0.3442622950819672, 0.5081967213114754, 0.48360655737704916, 0.4262295081967213, 0.3524590163934426, 0.2540983606557377, 0.23770491803278687, 0.23770491803278687, 0.23770491803278687, 0.23770491803278687, 0.2459016393442623, 0.2459016393442623, 0.2459016393442623, 0.2459016393442623, 0.2459016393442623, 0.2459016393442623, 0.2459016393442623, 0.2459016393442623, 0.2540983606557377, 0.2540983606557377, 0.2540983606557377, 0.2540983606557377, 0.2540983606557377, 0.2540983606557377, 0.2540983606557377, 0.2540983606557377, 0.2540983606557377, 0.2540983606557377, 0.2540983606557377, 0.2540983606557377, 0.2540983606557377, 0.2540983606557377, 0.2540983606557377, 0.2540983606557377, 0.26229508196721313, 0.26229508196721313, 0.27049180327868855, 0.819672131147541, 0.8852459016393442, 0.860655737704918, 0.5819672131147541, 0.4344262295081967, 0.30327868852459017, 0.27049180327868855, 0.2540983606557377, 0.2540983606557377, 0.2540983606557377, 0.2540983606557377, 0.2540983606557377, 0.2540983606557377, 0.2540983606557377, 0.2540983606557377, 0.2540983606557377, 0.2459016393442623, 0.2459016393442623, 0.2459016393442623, 0.2459016393442623, 0.2540983606557377, 0.2540983606557377, 0.2540983606557377, 0.2540983606557377, 0.2540983606557377, 0.2540983606557377, 0.2540983606557377, 0.2540983606557377, 0.2540983606557377, 0.2540983606557377, 0.2540983606557377, 0.2540983606557377, 0.2540983606557377, 0.2540983606557377, 0.2540983606557377, 0.2540983606557377, 0.2540983606557377, 0.2540983606557377, 0.2540983606557377, 0.2540983606557377, 0.2540983606557377, 0.2540983606557377, 0.2540983606557377, 0.2540983606557377, 0.2540983606557377, 0.2540983606557377, 0.26229508196721313, 0.26229508196721313, 0.26229508196721313, 0.26229508196721313, 0.26229508196721313, 0.26229508196721313, 0.26229508196721313, 0.26229508196721313, 0.26229508196721313, 0.26229508196721313, 0.26229508196721313, 0.26229508196721313, 0.26229508196721313, 0.27049180327868855, 0.26229508196721313, 0.26229508196721313, 0.26229508196721313, 0.26229508196721313, 0.27049180327868855, 0.26229508196721313, 0.2540983606557377, 0.2540983606557377, 0.2540983606557377, 0.2540983606557377, 0.2540983606557377, 0.2459016393442623, 0.2459016393442623, 0.2459016393442623, 0.2540983606557377, 0.2459016393442623, 0.2459016393442623, 0.2459016393442623, 0.2459016393442623, 0.2459016393442623, 0.2459016393442623, 0.2459016393442623, 0.2459016393442623, 0.2459016393442623, 0.2459016393442623, 0.2459016393442623, 0.2459016393442623, 0.2459016393442623, 0.2459016393442623, 0.2459016393442623, 0.2459016393442623, 0.2459016393442623, 0.2459016393442623, 0.23770491803278687, 0.23770491803278687, 0.23770491803278687, 0.23770491803278687, 0.23770491803278687, 0.23770491803278687, 0.23770491803278687, 0.23770491803278687, 0.23770491803278687, 0.23770491803278687, 0.23770491803278687, 0.23770491803278687, 0.23770491803278687, 0.23770491803278687, 0.23770491803278687, 0.23770491803278687, 0.23770491803278687, 0.23770491803278687, 0.23770491803278687, 0.23770491803278687, 0.23770491803278687, 0.23770491803278687, 0.2459016393442623, 0.9344262295081968, 0.9426229508196722, 0.9344262295081968, 0.9344262295081968, 0.2459016393442623, 0.3442622950819672, 0.9098360655737705, 0.9262295081967213, 0.9344262295081968, 0.9180327868852459, 0.8934426229508197, 0.27049180327868855, 0.26229508196721313, 0.2786885245901639, 0.9262295081967213, 0.9262295081967213, 0.9262295081967213, 0.9180327868852459, 0.27049180327868855, 0.27049180327868855, 0.26229508196721313, 0.27049180327868855, 0.27049180327868855, 0.2786885245901639, 0.2786885245901639, 0.28688524590163933, 0.29508196721311475, 0.29508196721311475, 0.29508196721311475, 0.29508196721311475, 0.30327868852459017, 0.29508196721311475, 0.29508196721311475, 0.29508196721311475, 0.30327868852459017, 0.30327868852459017, 0.30327868852459017, 0.30327868852459017, 0.30327868852459017, 0.3114754098360656, 0.3114754098360656, 0.3114754098360656, 0.3114754098360656, 0.3114754098360656, 0.319672131147541, 0.319672131147541, 0.319672131147541, 0.319672131147541, 0.3524590163934426], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Zeta_toxin.gap.json b/pfam_gap_rates/Zeta_toxin.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..75fb1bdf5e1c8922536ceb6c614ca4a66f4a226d
--- /dev/null
+++ b/pfam_gap_rates/Zeta_toxin.gap.json
@@ -0,0 +1 @@
+{"family": "Zeta_toxin", "n_seqs": 481, "length": 215, "gap_rates": [0.9417879417879418, 0.9106029106029107, 0.9002079002079002, 0.8898128898128899, 0.8877338877338877, 0.9480249480249481, 0.8648648648648649, 0.6756756756756757, 0.5384615384615384, 0.4677754677754678, 0.3970893970893971, 0.35550935550935553, 0.27442827442827444, 0.2390852390852391, 0.1683991683991684, 0.158004158004158, 0.14345114345114346, 0.13513513513513514, 0.13721413721413722, 0.13513513513513514, 0.13721413721413722, 0.13721413721413722, 0.13513513513513514, 0.13513513513513514, 0.13513513513513514, 0.13513513513513514, 0.13305613305613306, 0.13305613305613306, 0.13305613305613306, 0.13305613305613306, 0.13305613305613306, 0.13305613305613306, 0.13513513513513514, 0.13513513513513514, 0.13513513513513514, 0.13721413721413722, 0.1995841995841996, 0.48440748440748443, 0.7650727650727651, 0.7858627858627859, 0.6860706860706861, 0.5634095634095634, 0.31392931392931395, 0.22245322245322247, 0.18295218295218296, 0.19334719334719336, 0.19334719334719336, 0.20374220374220375, 0.19750519750519752, 0.16216216216216217, 0.16216216216216217, 0.16216216216216217, 0.1392931392931393, 0.14137214137214138, 0.14553014553014554, 0.15384615384615385, 0.16216216216216217, 0.1704781704781705, 0.2515592515592516, 0.2182952182952183, 0.26195426195426197, 0.26403326403326405, 0.2702702702702703, 0.4885654885654886, 0.4781704781704782, 0.4698544698544699, 0.8066528066528067, 0.8607068607068608, 0.817047817047817, 0.8045738045738046, 0.4553014553014553, 0.42411642411642414, 0.3866943866943867, 0.367983367983368, 0.28274428274428276, 0.2515592515592516, 0.2286902286902287, 0.18503118503118504, 0.17463617463617465, 0.1683991683991684, 0.16424116424116425, 0.15176715176715178, 0.13721413721413722, 0.13305613305613306, 0.1288981288981289, 0.13097713097713098, 0.13721413721413722, 0.13721413721413722, 0.14137214137214138, 0.13513513513513514, 0.13513513513513514, 0.11642411642411643, 0.10187110187110188, 0.09771309771309772, 0.09355509355509356, 0.09563409563409564, 0.0893970893970894, 0.0893970893970894, 0.0893970893970894, 0.09147609147609148, 0.09355509355509356, 0.09147609147609148, 0.09147609147609148, 0.08731808731808732, 0.0893970893970894, 0.08731808731808732, 0.08731808731808732, 0.08731808731808732, 0.0893970893970894, 0.09771309771309772, 0.09771309771309772, 0.09771309771309772, 0.0997920997920998, 0.09771309771309772, 0.10395010395010396, 0.39293139293139295, 0.9251559251559252, 0.12058212058212059, 0.1288981288981289, 0.11850311850311851, 0.12266112266112267, 0.14553014553014554, 0.15592515592515593, 0.2577962577962578, 0.33471933471933474, 0.2702702702702703, 0.26195426195426197, 0.26403326403326405, 0.2681912681912682, 0.2702702702702703, 0.2702702702702703, 0.27234927234927236, 0.27234927234927236, 0.2702702702702703, 0.9459459459459459, 0.2702702702702703, 0.27442827442827444, 0.918918918918919, 0.2785862785862786, 0.920997920997921, 0.28274428274428276, 0.2806652806652807, 0.28274428274428276, 0.2806652806652807, 0.28482328482328484, 0.2869022869022869, 0.2869022869022869, 0.2869022869022869, 0.2869022869022869, 0.288981288981289, 0.288981288981289, 0.288981288981289, 0.2910602910602911, 0.29313929313929316, 0.29521829521829523, 0.9334719334719335, 0.6756756756756757, 0.6902286902286903, 0.6881496881496881, 0.7692307692307693, 0.8648648648648649, 0.8918918918918919, 0.9272349272349273, 0.8835758835758836, 0.7962577962577962, 0.7463617463617463, 0.37422037422037424, 0.3783783783783784, 0.3700623700623701, 0.3471933471933472, 0.35343035343035345, 0.36174636174636177, 0.3659043659043659, 0.37214137214137216, 0.3804573804573805, 0.3908523908523909, 0.40124740124740127, 0.4074844074844075, 0.4074844074844075, 0.4261954261954262, 0.4386694386694387, 0.446985446985447, 0.4553014553014553, 0.46153846153846156, 0.47193347193347196, 0.4864864864864865, 0.49480249480249483, 0.5072765072765073, 0.5613305613305614, 0.5758835758835759, 0.5634095634095634, 0.6278586278586279, 0.6278586278586279, 0.9480249480249481, 0.9293139293139293, 0.6528066528066528, 0.6340956340956341, 0.6237006237006237, 0.6216216216216216, 0.6174636174636174, 0.6237006237006237, 0.6299376299376299, 0.6382536382536382, 0.6444906444906445, 0.6632016632016632, 0.6985446985446986, 0.7234927234927235, 0.9230769230769231, 0.8316008316008316, 0.83991683991684, 0.8482328482328483, 0.8523908523908524, 0.8627858627858628, 0.8835758835758836, 0.9168399168399168], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/bPH_2.gap.json b/pfam_gap_rates/bPH_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a84dfcc73e8ec9cc390cae4ce891aa478fe6c17a
--- /dev/null
+++ b/pfam_gap_rates/bPH_2.gap.json
@@ -0,0 +1 @@
+{"family": "bPH_2", "n_seqs": 2595, "length": 89, "gap_rates": [0.5610789980732177, 0.4046242774566474, 0.28439306358381505, 0.2138728323699422, 0.16685934489402698, 0.9472061657032755, 0.12177263969171484, 0.10404624277456648, 0.08053949903660887, 0.06551059730250482, 0.05394990366088632, 0.047398843930635835, 0.04084778420038536, 0.03391136801541426, 0.03005780346820809, 0.027360308285163778, 0.021965317919075144, 0.02157996146435453, 0.9360308285163776, 0.018497109826589597, 0.01464354527938343, 0.01233140655105973, 0.011560693641618497, 0.01464354527938343, 0.009248554913294798, 0.005780346820809248, 0.0038535645472061657, 0.002697495183044316, 0.0019267822736030828, 0.0015414258188824663, 0.0007707129094412332, 0.0003853564547206166, 0.0, 0.0, 0.0003853564547206166, 0.0, 0.0, 0.0, 0.0, 0.05240847784200385, 0.047784200385356454, 0.06705202312138728, 0.0674373795761079, 0.024277456647398842, 0.015028901734104046, 0.0023121387283236996, 0.002697495183044316, 0.0023121387283236996, 0.0023121387283236996, 0.0030828516377649326, 0.003468208092485549, 0.004238921001926782, 0.005780346820809248, 0.006165703275529865, 0.006936416184971098, 0.010789980732177264, 0.014258188824662813, 0.017726396917148363, 0.02119460500963391, 0.02466281310211946, 0.03159922928709056, 0.2832369942196532, 0.5969171483622351, 0.47591522157996147, 0.8246628131021194, 0.8820809248554913, 0.9202312138728324, 0.9410404624277456, 0.8963391136801542, 0.8551059730250482, 0.7576107899807322, 0.29364161849710985, 0.14527938342967245, 0.1394990366088632, 0.14605009633911367, 0.15414258188824662, 0.1653179190751445, 0.17263969171483623, 0.18227360308285165, 0.19113680154142582, 0.20423892100192678, 0.22119460500963392, 0.24624277456647398, 0.26473988439306356, 0.28516377649325625, 0.33179190751445087, 0.39922928709055877, 0.5236994219653179, 0.7148362235067437], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/bPH_4.gap.json b/pfam_gap_rates/bPH_4.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..7fb9a7267f8b14af01c9c1a92fa4c652e6dbaa24
--- /dev/null
+++ b/pfam_gap_rates/bPH_4.gap.json
@@ -0,0 +1 @@
+{"family": "bPH_4", "n_seqs": 138, "length": 85, "gap_rates": [0.3695652173913043, 0.10869565217391304, 0.06521739130434782, 0.043478260869565216, 0.021739130434782608, 0.8623188405797102, 0.014492753623188406, 0.014492753623188406, 0.007246376811594203, 0.007246376811594203, 0.0, 0.007246376811594203, 0.007246376811594203, 0.0, 0.0, 0.0, 0.7681159420289855, 0.007246376811594203, 0.0, 0.0, 0.0, 0.0, 0.8623188405797102, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.014492753623188406, 0.050724637681159424, 0.036231884057971016, 0.050724637681159424, 0.043478260869565216, 0.7898550724637681, 0.9420289855072463, 0.9202898550724637, 0.782608695652174, 0.036231884057971016, 0.036231884057971016, 0.036231884057971016, 0.043478260869565216, 0.028985507246376812, 0.028985507246376812, 0.021739130434782608, 0.021739130434782608, 0.021739130434782608, 0.021739130434782608, 0.021739130434782608, 0.021739130434782608, 0.021739130434782608, 0.021739130434782608, 0.8115942028985508, 0.8913043478260869, 0.7536231884057971, 0.15217391304347827, 0.036231884057971016, 0.021739130434782608, 0.021739130434782608, 0.7753623188405797, 0.028985507246376812, 0.021739130434782608, 0.021739130434782608, 0.021739130434782608, 0.021739130434782608, 0.021739130434782608, 0.021739130434782608, 0.021739130434782608, 0.021739130434782608, 0.021739130434782608, 0.021739130434782608, 0.028985507246376812, 0.036231884057971016, 0.036231884057971016, 0.043478260869565216, 0.06521739130434782, 0.11594202898550725, 0.17391304347826086, 0.42028985507246375], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/bZIP_1.gap.json b/pfam_gap_rates/bZIP_1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..7f94864e9c04efc77f86b2e84060edddc67c10d0
--- /dev/null
+++ b/pfam_gap_rates/bZIP_1.gap.json
@@ -0,0 +1 @@
+{"family": "bZIP_1", "n_seqs": 3991, "length": 63, "gap_rates": [0.8138311200200451, 0.6890503633174643, 0.5818090704084189, 0.47406664996241543, 0.17815083938862442, 0.12778752192432974, 0.07917815083938863, 0.04735655224254573, 0.027311450764219494, 0.016537208719619143, 0.012778752192432975, 0.010022550739163118, 0.009020295665246805, 0.007015785517414182, 0.004259584064144325, 0.0025056376847907794, 0.0022550739163117012, 0.0022550739163117012, 0.0022550739163117012, 0.0017539463793535455, 0.0017539463793535455, 0.0017539463793535455, 0.0015033826108744675, 0.0015033826108744675, 0.00025056376847907793, 0.0005011275369581559, 0.0007516913054372337, 0.0012528188423953897, 0.0015033826108744675, 0.0017539463793535455, 0.0017539463793535455, 0.0025056376847907794, 0.0025056376847907794, 0.011024805813079429, 0.018291155098972688, 0.02280130293159609, 0.026058631921824105, 0.02881483337509396, 0.035580055124029064, 0.04234527687296417, 0.05011275369581558, 0.060636431971936855, 0.06439488849912303, 0.07617138561763968, 0.07967927837634678, 0.10273114507642195, 0.12077173640691556, 0.1325482335254322, 0.15459784515159108, 0.17564520170383363, 0.19393635680280633, 0.21172638436482086, 0.22751190177900277, 0.25231771485843146, 0.27712352793786016, 0.308694562766224, 0.3470308193435229, 0.40365823101979453, 0.42746178902530696, 0.4820846905537459, 0.5489852167376598, 0.6479579052868956, 0.7509396141317966], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/c-SKI_SMAD_bind.gap.json b/pfam_gap_rates/c-SKI_SMAD_bind.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..20b841788f5619392478dc8f07cdf50b50afae01
--- /dev/null
+++ b/pfam_gap_rates/c-SKI_SMAD_bind.gap.json
@@ -0,0 +1 @@
+{"family": "c-SKI_SMAD_bind", "n_seqs": 169, "length": 101, "gap_rates": [0.3609467455621302, 0.14201183431952663, 0.07692307692307693, 0.0650887573964497, 0.0650887573964497, 0.0650887573964497, 0.0650887573964497, 0.07100591715976332, 0.07100591715976332, 0.0650887573964497, 0.05917159763313609, 0.05325443786982249, 0.029585798816568046, 0.029585798816568046, 0.029585798816568046, 0.029585798816568046, 0.029585798816568046, 0.029585798816568046, 0.04142011834319527, 0.03550295857988166, 0.07692307692307693, 0.07692307692307693, 0.07100591715976332, 0.047337278106508875, 0.047337278106508875, 0.07100591715976332, 0.05325443786982249, 0.047337278106508875, 0.023668639053254437, 0.023668639053254437, 0.023668639053254437, 0.023668639053254437, 0.023668639053254437, 0.023668639053254437, 0.01775147928994083, 0.01775147928994083, 0.011834319526627219, 0.01775147928994083, 0.01775147928994083, 0.01775147928994083, 0.01775147928994083, 0.01775147928994083, 0.01775147928994083, 0.01775147928994083, 0.01775147928994083, 0.01775147928994083, 0.01775147928994083, 0.01775147928994083, 0.01775147928994083, 0.023668639053254437, 0.03550295857988166, 0.8579881656804734, 0.03550295857988166, 0.03550295857988166, 0.8520710059171598, 0.04142011834319527, 0.04142011834319527, 0.05325443786982249, 0.05325443786982249, 0.4260355029585799, 0.42011834319526625, 0.05325443786982249, 0.05325443786982249, 0.05325443786982249, 0.05917159763313609, 0.05917159763313609, 0.6331360946745562, 0.6331360946745562, 0.6331360946745562, 0.05917159763313609, 0.05917159763313609, 0.05325443786982249, 0.05325443786982249, 0.05325443786982249, 0.05325443786982249, 0.05325443786982249, 0.05917159763313609, 0.1242603550295858, 0.1893491124260355, 0.9467455621301775, 0.7455621301775148, 0.6272189349112426, 0.5976331360946746, 0.28402366863905326, 0.1242603550295858, 0.17751479289940827, 0.34911242603550297, 0.14201183431952663, 0.14792899408284024, 0.14792899408284024, 0.16568047337278108, 0.17159763313609466, 0.1834319526627219, 0.1834319526627219, 0.1834319526627219, 0.1952662721893491, 0.21301775147928995, 0.21893491124260356, 0.23668639053254437, 0.3254437869822485, 0.40236686390532544], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/dUTPase_2.gap.json b/pfam_gap_rates/dUTPase_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..571458f719bd1f273a8c21a0c8410a185cf53d79
--- /dev/null
+++ b/pfam_gap_rates/dUTPase_2.gap.json
@@ -0,0 +1 @@
+{"family": "dUTPase_2", "n_seqs": 282, "length": 208, "gap_rates": [0.5886524822695035, 0.2127659574468085, 0.16312056737588654, 0.1453900709219858, 0.13829787234042554, 0.13829787234042554, 0.13829787234042554, 0.13829787234042554, 0.1347517730496454, 0.13120567375886524, 0.1276595744680851, 0.1276595744680851, 0.12411347517730496, 0.12411347517730496, 0.12056737588652482, 0.11702127659574468, 0.11702127659574468, 0.11702127659574468, 0.11702127659574468, 0.11702127659574468, 0.375886524822695, 0.32978723404255317, 0.28368794326241137, 0.26595744680851063, 0.2198581560283688, 0.1950354609929078, 0.2765957446808511, 0.9042553191489362, 0.8723404255319149, 0.6950354609929078, 0.5567375886524822, 0.5, 0.41134751773049644, 0.35815602836879434, 0.13120567375886524, 0.425531914893617, 0.40070921985815605, 0.3900709219858156, 0.3546099290780142, 0.09929078014184398, 0.09929078014184398, 0.09929078014184398, 0.09929078014184398, 0.09219858156028368, 0.08865248226950355, 0.08865248226950355, 0.0851063829787234, 0.0851063829787234, 0.0851063829787234, 0.08865248226950355, 0.0851063829787234, 0.0851063829787234, 0.09219858156028368, 0.425531914893617, 0.08865248226950355, 0.08865248226950355, 0.08865248226950355, 0.08865248226950355, 0.08865248226950355, 0.08865248226950355, 0.0851063829787234, 0.0851063829787234, 0.0851063829787234, 0.8226950354609929, 0.25886524822695034, 0.07446808510638298, 0.07801418439716312, 0.07801418439716312, 0.07801418439716312, 0.08156028368794327, 0.07446808510638298, 0.07801418439716312, 0.07801418439716312, 0.07801418439716312, 0.07801418439716312, 0.07801418439716312, 0.07801418439716312, 0.07801418439716312, 0.08156028368794327, 0.08156028368794327, 0.08156028368794327, 0.08156028368794327, 0.08156028368794327, 0.08156028368794327, 0.08156028368794327, 0.0851063829787234, 0.10638297872340426, 0.12056737588652482, 0.13120567375886524, 0.14893617021276595, 0.16312056737588654, 0.16666666666666666, 0.1773049645390071, 0.18085106382978725, 0.1879432624113475, 0.2765957446808511, 0.8191489361702128, 0.8617021276595744, 0.875886524822695, 0.8936170212765957, 0.9326241134751773, 0.9361702127659575, 0.9397163120567376, 0.9432624113475178, 0.9397163120567376, 0.9361702127659575, 0.925531914893617, 0.8829787234042553, 0.8723404255319149, 0.8333333333333334, 0.7730496453900709, 0.46808510638297873, 0.2553191489361702, 0.23404255319148937, 0.23404255319148937, 0.22340425531914893, 0.22340425531914893, 0.22340425531914893, 0.22695035460992907, 0.22695035460992907, 0.23049645390070922, 0.22340425531914893, 0.22340425531914893, 0.1879432624113475, 0.8617021276595744, 0.8865248226950354, 0.9078014184397163, 0.9113475177304965, 0.9290780141843972, 0.9397163120567376, 0.9468085106382979, 0.9361702127659575, 0.9219858156028369, 0.9113475177304965, 0.9042553191489362, 0.8829787234042553, 0.851063829787234, 0.20921985815602837, 0.20921985815602837, 0.8581560283687943, 0.875886524822695, 0.8971631205673759, 0.9432624113475178, 0.9290780141843972, 0.8829787234042553, 0.8617021276595744, 0.8439716312056738, 0.19148936170212766, 0.1879432624113475, 0.18439716312056736, 0.1950354609929078, 0.1879432624113475, 0.18439716312056736, 0.18085106382978725, 0.18085106382978725, 0.18439716312056736, 0.1879432624113475, 0.18085106382978725, 0.18085106382978725, 0.1879432624113475, 0.9361702127659575, 0.23404255319148937, 0.19858156028368795, 0.925531914893617, 0.9219858156028369, 0.18085106382978725, 0.1773049645390071, 0.1773049645390071, 0.18085106382978725, 0.19148936170212766, 0.1879432624113475, 0.1773049645390071, 0.1773049645390071, 0.1773049645390071, 0.18085106382978725, 0.16666666666666666, 0.1524822695035461, 0.1453900709219858, 0.13829787234042554, 0.13120567375886524, 0.13120567375886524, 0.13120567375886524, 0.13829787234042554, 0.13120567375886524, 0.13120567375886524, 0.18085106382978725, 0.18085106382978725, 0.17375886524822695, 0.13120567375886524, 0.1347517730496454, 0.13829787234042554, 0.1453900709219858, 0.1524822695035461, 0.16312056737588654, 0.18085106382978725, 0.1879432624113475, 0.19148936170212766, 0.1950354609929078, 0.19858156028368795, 0.20212765957446807, 0.20567375886524822, 0.2127659574468085, 0.2127659574468085, 0.21631205673758866, 0.22340425531914893, 0.24113475177304963, 0.24822695035460993, 0.25177304964539005], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/eIF2_C.gap.json b/pfam_gap_rates/eIF2_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..5b3982a576cc9f009b2e4b6c05655d7d08b76f4b
--- /dev/null
+++ b/pfam_gap_rates/eIF2_C.gap.json
@@ -0,0 +1 @@
+{"family": "eIF2_C", "n_seqs": 450, "length": 95, "gap_rates": [0.07111111111111111, 0.035555555555555556, 0.028888888888888888, 0.02666666666666667, 0.02666666666666667, 0.02666666666666667, 0.02666666666666667, 0.02666666666666667, 0.02666666666666667, 0.02666666666666667, 0.02666666666666667, 0.02666666666666667, 0.024444444444444446, 0.022222222222222223, 0.024444444444444446, 0.02666666666666667, 0.02666666666666667, 0.028888888888888888, 0.37333333333333335, 0.82, 0.84, 0.7022222222222222, 0.36444444444444446, 0.05333333333333334, 0.03777777777777778, 0.4, 0.8622222222222222, 0.6933333333333334, 0.39555555555555555, 0.02666666666666667, 0.022222222222222223, 0.013333333333333334, 0.013333333333333334, 0.008888888888888889, 0.011111111111111112, 0.006666666666666667, 0.006666666666666667, 0.006666666666666667, 0.006666666666666667, 0.006666666666666667, 0.006666666666666667, 0.006666666666666667, 0.006666666666666667, 0.006666666666666667, 0.006666666666666667, 0.006666666666666667, 0.006666666666666667, 0.006666666666666667, 0.006666666666666667, 0.006666666666666667, 0.006666666666666667, 0.0044444444444444444, 0.0044444444444444444, 0.0044444444444444444, 0.0044444444444444444, 0.0044444444444444444, 0.0044444444444444444, 0.006666666666666667, 0.9444444444444444, 0.0044444444444444444, 0.0044444444444444444, 0.0044444444444444444, 0.0044444444444444444, 0.0044444444444444444, 0.0044444444444444444, 0.0044444444444444444, 0.0044444444444444444, 0.0044444444444444444, 0.0044444444444444444, 0.0044444444444444444, 0.0044444444444444444, 0.0044444444444444444, 0.0044444444444444444, 0.006666666666666667, 0.006666666666666667, 0.006666666666666667, 0.008888888888888889, 0.008888888888888889, 0.011111111111111112, 0.011111111111111112, 0.011111111111111112, 0.011111111111111112, 0.011111111111111112, 0.011111111111111112, 0.013333333333333334, 0.011111111111111112, 0.013333333333333334, 0.017777777777777778, 0.028888888888888888, 0.03111111111111111, 0.03333333333333333, 0.03333333333333333, 0.04, 0.04888888888888889, 0.1288888888888889], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/gag_pre-integrs.gap.json b/pfam_gap_rates/gag_pre-integrs.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ae62593765a8729797bb176e476f40b53b480a26
--- /dev/null
+++ b/pfam_gap_rates/gag_pre-integrs.gap.json
@@ -0,0 +1 @@
+{"family": "gag_pre-integrs", "n_seqs": 968, "length": 85, "gap_rates": [0.7324380165289256, 0.5909090909090909, 0.5402892561983471, 0.5340909090909091, 0.5320247933884298, 0.5216942148760331, 0.5134297520661157, 0.6002066115702479, 0.9483471074380165, 0.5134297520661157, 0.47830578512396693, 0.44834710743801653, 0.40702479338842973, 0.3543388429752066, 0.31714876033057854, 0.29958677685950413, 0.2727272727272727, 0.9163223140495868, 0.8760330578512396, 0.23863636363636365, 0.21177685950413222, 0.1787190082644628, 0.9276859504132231, 0.9028925619834711, 0.10743801652892562, 0.9235537190082644, 0.06508264462809918, 0.05371900826446281, 0.03202479338842975, 0.022727272727272728, 0.011363636363636364, 0.007231404958677686, 0.0030991735537190084, 0.002066115702479339, 0.0010330578512396695, 0.0010330578512396695, 0.0010330578512396695, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0010330578512396695, 0.0010330578512396695, 0.0010330578512396695, 0.0010330578512396695, 0.002066115702479339, 0.0030991735537190084, 0.015495867768595042, 0.07024793388429752, 0.07024793388429752, 0.03615702479338843, 0.9039256198347108, 0.9070247933884298, 0.8801652892561983, 0.03512396694214876, 0.023760330578512397, 0.02066115702479339, 0.058884297520661155, 0.029958677685950414, 0.06611570247933884, 0.8636363636363636, 0.8946280991735537, 0.8502066115702479, 0.03512396694214876, 0.03512396694214876, 0.7055785123966942, 0.9225206611570248, 0.8037190082644629, 0.6756198347107438, 0.03925619834710744, 0.049586776859504134, 0.9462809917355371, 0.9442148760330579, 0.058884297520661155, 0.05165289256198347, 0.05475206611570248, 0.056818181818181816, 0.06301652892561983, 0.06508264462809918, 0.07128099173553719, 0.08161157024793389, 0.10640495867768596, 0.2809917355371901], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/tRNA-synt_1c.gap.json b/pfam_gap_rates/tRNA-synt_1c.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..610553bbfa5f3e4bf9e9aa1dc7c3b7a8d293bbaa
--- /dev/null
+++ b/pfam_gap_rates/tRNA-synt_1c.gap.json
@@ -0,0 +1 @@
+{"family": "tRNA-synt_1c", "n_seqs": 5000, "length": 329, "gap_rates": [0.7028, 0.2994, 0.2012, 0.181, 0.126, 0.126, 0.124, 0.124, 0.1242, 0.1236, 0.123, 0.1226, 0.1222, 0.1156, 0.1154, 0.115, 0.1102, 0.1088, 0.1088, 0.1066, 0.106, 0.104, 0.1018, 0.1016, 0.1024, 0.1022, 0.1014, 0.1016, 0.1, 0.1006, 0.1028, 0.1012, 0.1, 0.1004, 0.0992, 0.0982, 0.0978, 0.0968, 0.0962, 0.0958, 0.0958, 0.0958, 0.0958, 0.0954, 0.097, 0.097, 0.0962, 0.0982, 0.099, 0.0962, 0.096, 0.0956, 0.095, 0.0948, 0.0948, 0.095, 0.095, 0.0948, 0.0946, 0.0946, 0.0946, 0.0944, 0.0942, 0.0952, 0.0954, 0.0954, 0.095, 0.3108, 0.6486, 0.6528, 0.6692, 0.6726, 0.9468, 0.6702, 0.6662, 0.6518, 0.6464, 0.0996, 0.1022, 0.094, 0.0938, 0.0936, 0.0934, 0.0934, 0.093, 0.0932, 0.0936, 0.0936, 0.0932, 0.0926, 0.0924, 0.0916, 0.0922, 0.092, 0.092, 0.0918, 0.091, 0.0954, 0.0962, 0.0954, 0.0956, 0.0916, 0.091, 0.0914, 0.0922, 0.0942, 0.099, 0.103, 0.1044, 0.109, 0.111, 0.113, 0.1162, 0.119, 0.1222, 0.1266, 0.1284, 0.1356, 0.1384, 0.3744, 0.3652, 0.7698, 0.9456, 0.7578, 0.2262, 0.1928, 0.1822, 0.5408, 0.4676, 0.1854, 0.1674, 0.1606, 0.1544, 0.1366, 0.135, 0.1346, 0.1336, 0.133, 0.1328, 0.1336, 0.136, 0.1358, 0.5794, 0.2492, 0.2502, 0.2426, 0.2344, 0.2154, 0.1858, 0.1476, 0.131, 0.1246, 0.1194, 0.1162, 0.1148, 0.1124, 0.1076, 0.105, 0.103, 0.1016, 0.102, 0.1014, 0.1012, 0.1012, 0.1014, 0.1602, 0.136, 0.6418, 0.1956, 0.1152, 0.0988, 0.0982, 0.0978, 0.0984, 0.0982, 0.097, 0.097, 0.096, 0.0964, 0.0958, 0.0948, 0.0952, 0.0958, 0.4524, 0.416, 0.386, 0.94, 0.0904, 0.0876, 0.0872, 0.087, 0.0872, 0.0866, 0.0868, 0.086, 0.0856, 0.0848, 0.0844, 0.0846, 0.084, 0.084, 0.0842, 0.0844, 0.0844, 0.0848, 0.085, 0.085, 0.0848, 0.0846, 0.0848, 0.0854, 0.0838, 0.083, 0.0836, 0.0838, 0.0836, 0.0838, 0.0838, 0.0844, 0.0848, 0.085, 0.0856, 0.086, 0.086, 0.0856, 0.0856, 0.086, 0.086, 0.0862, 0.0864, 0.0864, 0.0864, 0.0862, 0.086, 0.086, 0.0866, 0.0868, 0.0882, 0.0882, 0.0878, 0.2362, 0.9362, 0.0868, 0.0858, 0.0868, 0.087, 0.0868, 0.091, 0.0876, 0.0876, 0.0878, 0.0882, 0.0886, 0.0882, 0.0884, 0.0892, 0.0908, 0.0894, 0.0884, 0.0884, 0.0886, 0.09, 0.0914, 0.0928, 0.098, 0.107, 0.1138, 0.569, 0.5432, 0.1428, 0.1468, 0.1484, 0.1488, 0.1464, 0.148, 0.1484, 0.1514, 0.1538, 0.1548, 0.1574, 0.1592, 0.1626, 0.164, 0.1666, 0.1692, 0.1732, 0.1764, 0.1844, 0.1934, 0.1976, 0.2032, 0.2064, 0.2082, 0.3276, 0.2266, 0.2222, 0.223, 0.2228, 0.2244, 0.2258, 0.2266, 0.2274, 0.2282, 0.2292, 0.2298, 0.2302, 0.2304, 0.2314, 0.232, 0.234, 0.5256, 0.246, 0.251, 0.253, 0.2538, 0.257, 0.2576, 0.259, 0.2604, 0.2618, 0.2644, 0.2682, 0.2708, 0.276, 0.2816, 0.2908, 0.335, 0.3964, 0.7256], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/tRNA-synt_2d.gap.json b/pfam_gap_rates/tRNA-synt_2d.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..66d6a72dd27ddadb4ea0d2cf62facfa44ad8d7a4
--- /dev/null
+++ b/pfam_gap_rates/tRNA-synt_2d.gap.json
@@ -0,0 +1 @@
+{"family": "tRNA-synt_2d", "n_seqs": 3380, "length": 300, "gap_rates": [0.914792899408284, 0.3505917159763314, 0.3005917159763314, 0.29467455621301775, 0.28816568047337277, 0.28017751479289943, 0.2686390532544379, 0.2618343195266272, 0.23846153846153847, 0.22159763313609468, 0.20828402366863905, 0.1937869822485207, 0.18106508875739644, 0.17307692307692307, 0.16627218934911242, 0.15857988165680473, 0.15384615384615385, 0.15, 0.1482248520710059, 0.1470414201183432, 0.14585798816568046, 0.14467455621301775, 0.14349112426035504, 0.14319526627218934, 0.142603550295858, 0.1423076923076923, 0.14201183431952663, 0.14201183431952663, 0.14171597633136096, 0.14201183431952663, 0.14142011834319526, 0.14408284023668638, 0.13994082840236685, 0.13550295857988165, 0.1289940828402367, 0.1289940828402367, 0.12810650887573966, 0.12721893491124261, 0.12692307692307692, 0.836094674556213, 0.12544378698224853, 0.1227810650887574, 0.12130177514792899, 0.1150887573964497, 0.14763313609467454, 0.12041420118343195, 0.10946745562130178, 0.10976331360946745, 0.10710059171597633, 0.10621301775147929, 0.10473372781065089, 0.10443786982248521, 0.10443786982248521, 0.10414201183431952, 0.10443786982248521, 0.10502958579881656, 0.10532544378698225, 0.10650887573964497, 0.10562130177514793, 0.10710059171597633, 0.11035502958579882, 0.11035502958579882, 0.11272189349112426, 0.1136094674556213, 0.11242603550295859, 0.10946745562130178, 0.10887573964497041, 0.10680473372781064, 0.10473372781065089, 0.10473372781065089, 0.10443786982248521, 0.6449704142011834, 0.6207100591715976, 0.6168639053254438, 0.5946745562130178, 0.6005917159763313, 0.7165680473372781, 0.8207100591715977, 0.828698224852071, 0.840828402366864, 0.850887573964497, 0.855621301775148, 0.8582840236686391, 0.8588757396449704, 0.8600591715976331, 0.8606508875739645, 0.8612426035502958, 0.8618343195266273, 0.8627218934911243, 0.8656804733727811, 0.8721893491124261, 0.8766272189349112, 0.8819526627218935, 0.9387573964497041, 0.8807692307692307, 0.8733727810650888, 0.8707100591715976, 0.863905325443787, 0.8621301775147929, 0.8618343195266273, 0.8606508875739645, 0.8606508875739645, 0.8588757396449704, 0.8582840236686391, 0.857396449704142, 0.8538461538461538, 0.8461538461538461, 0.8340236686390533, 0.8242603550295858, 0.8097633136094674, 0.6544378698224852, 0.11834319526627218, 0.10887573964497041, 0.10236686390532544, 0.10207100591715976, 0.10177514792899409, 0.10207100591715976, 0.10207100591715976, 0.10177514792899409, 0.10236686390532544, 0.10177514792899409, 0.10207100591715976, 0.10236686390532544, 0.10266272189349113, 0.10266272189349113, 0.10443786982248521, 0.10325443786982248, 0.10355029585798817, 0.10355029585798817, 0.7159763313609467, 0.8298816568047337, 0.9115384615384615, 0.9363905325443787, 0.928698224852071, 0.8742603550295858, 0.7763313609467456, 0.6659763313609467, 0.10236686390532544, 0.10562130177514793, 0.10739644970414201, 0.10295857988165681, 0.14437869822485208, 0.15710059171597632, 0.11775147928994083, 0.10266272189349113, 0.09881656804733728, 0.09792899408284024, 0.0970414201183432, 0.09763313609467456, 0.09733727810650887, 0.1150887573964497, 0.09644970414201183, 0.09615384615384616, 0.09615384615384616, 0.09585798816568047, 0.09556213017751479, 0.09644970414201183, 0.33402366863905325, 0.0970414201183432, 0.09644970414201183, 0.09644970414201183, 0.0970414201183432, 0.09674556213017751, 0.09585798816568047, 0.09526627218934912, 0.09526627218934912, 0.09497041420118343, 0.09378698224852071, 0.0940828402366864, 0.09467455621301775, 0.09437869822485206, 0.09644970414201183, 0.11124260355029586, 0.12810650887573966, 0.1423076923076923, 0.14970414201183432, 0.14319526627218934, 0.14319526627218934, 0.14349112426035504, 0.142603550295858, 0.13254437869822486, 0.11863905325443787, 0.11834319526627218, 0.11745562130177514, 0.11804733727810651, 0.11893491124260355, 0.11893491124260355, 0.11893491124260355, 0.11952662721893491, 0.11982248520710059, 0.12011834319526628, 0.11952662721893491, 0.11834319526627218, 0.11479289940828402, 0.2757396449704142, 0.1136094674556213, 0.1091715976331361, 0.10710059171597633, 0.8701183431952663, 0.3079881656804734, 0.1059171597633136, 0.10177514792899409, 0.10177514792899409, 0.10207100591715976, 0.10118343195266272, 0.1014792899408284, 0.10118343195266272, 0.1014792899408284, 0.10029585798816568, 0.10059171597633136, 0.10059171597633136, 0.10088757396449705, 0.10088757396449705, 0.1014792899408284, 0.10177514792899409, 0.10177514792899409, 0.10207100591715976, 0.10177514792899409, 0.10236686390532544, 0.10207100591715976, 0.10384615384615385, 0.10680473372781064, 0.44319526627218936, 0.5266272189349113, 0.5325443786982249, 0.5426035502958579, 0.9470414201183432, 0.9491124260355029, 0.5976331360946746, 0.5396449704142012, 0.5304733727810651, 0.521301775147929, 0.4393491124260355, 0.42958579881656805, 0.31479289940828403, 0.25828402366863906, 0.10976331360946745, 0.10828402366863905, 0.10502958579881656, 0.1059171597633136, 0.10739644970414201, 0.10887573964497041, 0.10384615384615385, 0.10266272189349113, 0.10325443786982248, 0.10118343195266272, 0.10088757396449705, 0.09970414201183432, 0.10029585798816568, 0.10029585798816568, 0.10088757396449705, 0.10059171597633136, 0.10059171597633136, 0.10088757396449705, 0.10207100591715976, 0.10236686390532544, 0.10355029585798817, 0.10473372781065089, 0.10532544378698225, 0.24289940828402368, 0.37248520710059174, 0.15118343195266273, 0.11331360946745563, 0.11479289940828402, 0.11538461538461539, 0.11627218934911243, 0.11686390532544379, 0.11745562130177514, 0.11834319526627218, 0.11923076923076924, 0.11923076923076924, 0.12011834319526628, 0.12100591715976332, 0.12100591715976332, 0.12159763313609467, 0.12218934911242603, 0.12218934911242603, 0.12248520710059171, 0.12248520710059171, 0.12307692307692308, 0.12307692307692308, 0.12307692307692308, 0.12307692307692308, 0.12366863905325444, 0.1242603550295858, 0.1242603550295858, 0.12455621301775148, 0.12544378698224853, 0.12662721893491125, 0.12751479289940829, 0.13047337278106508, 0.13372781065088757, 0.13964497041420118, 0.14319526627218934, 0.1576923076923077, 0.19319526627218936, 0.21775147928994082, 0.2541420118343195, 0.286094674556213, 0.413905325443787], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/vWA-TerF-like.gap.json b/pfam_gap_rates/vWA-TerF-like.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..042eeae857c99f39353c15b5edfc5423b363fa83
--- /dev/null
+++ b/pfam_gap_rates/vWA-TerF-like.gap.json
@@ -0,0 +1 @@
+{"family": "vWA-TerF-like", "n_seqs": 149, "length": 248, "gap_rates": [0.6711409395973155, 0.4563758389261745, 0.35570469798657717, 0.31543624161073824, 0.04697986577181208, 0.04697986577181208, 0.04697986577181208, 0.04697986577181208, 0.04697986577181208, 0.04697986577181208, 0.04697986577181208, 0.04697986577181208, 0.04697986577181208, 0.04697986577181208, 0.04697986577181208, 0.04697986577181208, 0.04697986577181208, 0.04697986577181208, 0.04697986577181208, 0.04697986577181208, 0.04697986577181208, 0.9328859060402684, 0.9395973154362416, 0.9328859060402684, 0.053691275167785234, 0.06040268456375839, 0.053691275167785234, 0.04697986577181208, 0.8993288590604027, 0.9060402684563759, 0.8993288590604027, 0.04697986577181208, 0.04697986577181208, 0.04697986577181208, 0.04697986577181208, 0.04697986577181208, 0.04697986577181208, 0.04697986577181208, 0.04697986577181208, 0.04697986577181208, 0.04697986577181208, 0.9060402684563759, 0.9060402684563759, 0.9060402684563759, 0.04697986577181208, 0.9194630872483222, 0.9194630872483222, 0.9194630872483222, 0.04697986577181208, 0.04697986577181208, 0.04697986577181208, 0.04697986577181208, 0.04697986577181208, 0.35570469798657717, 0.06040268456375839, 0.04697986577181208, 0.04697986577181208, 0.04697986577181208, 0.04697986577181208, 0.04697986577181208, 0.04697986577181208, 0.04697986577181208, 0.04697986577181208, 0.04697986577181208, 0.053691275167785234, 0.04697986577181208, 0.04697986577181208, 0.04697986577181208, 0.04697986577181208, 0.04697986577181208, 0.04697986577181208, 0.04697986577181208, 0.053691275167785234, 0.053691275167785234, 0.04697986577181208, 0.04697986577181208, 0.04697986577181208, 0.9395973154362416, 0.04697986577181208, 0.04697986577181208, 0.912751677852349, 0.912751677852349, 0.9194630872483222, 0.912751677852349, 0.912751677852349, 0.8926174496644296, 0.08053691275167785, 0.087248322147651, 0.1476510067114094, 0.2550335570469799, 0.22818791946308725, 0.18791946308724833, 0.3221476510067114, 0.48322147651006714, 0.35570469798657717, 0.26174496644295303, 0.15436241610738255, 0.14093959731543623, 0.12751677852348994, 0.10067114093959731, 0.10738255033557047, 0.6241610738255033, 0.1342281879194631, 0.087248322147651, 0.08053691275167785, 0.0738255033557047, 0.053691275167785234, 0.04697986577181208, 0.04697986577181208, 0.04697986577181208, 0.04697986577181208, 0.04697986577181208, 0.04697986577181208, 0.04697986577181208, 0.053691275167785234, 0.053691275167785234, 0.06040268456375839, 0.2214765100671141, 0.8791946308724832, 0.912751677852349, 0.9328859060402684, 0.912751677852349, 0.6241610738255033, 0.19463087248322147, 0.0738255033557047, 0.06711409395973154, 0.06040268456375839, 0.087248322147651, 0.06711409395973154, 0.06040268456375839, 0.06040268456375839, 0.06711409395973154, 0.06040268456375839, 0.06040268456375839, 0.06040268456375839, 0.06040268456375839, 0.06040268456375839, 0.06040268456375839, 0.06040268456375839, 0.06040268456375839, 0.06040268456375839, 0.06040268456375839, 0.06040268456375839, 0.8859060402684564, 0.8859060402684564, 0.1476510067114094, 0.1476510067114094, 0.06711409395973154, 0.06711409395973154, 0.06040268456375839, 0.06040268456375839, 0.06040268456375839, 0.06040268456375839, 0.06040268456375839, 0.06711409395973154, 0.06711409395973154, 0.06711409395973154, 0.8590604026845637, 0.8590604026845637, 0.8590604026845637, 0.8590604026845637, 0.8590604026845637, 0.08053691275167785, 0.8523489932885906, 0.87248322147651, 0.9194630872483222, 0.9261744966442953, 0.8859060402684564, 0.8657718120805369, 0.8456375838926175, 0.087248322147651, 0.9463087248322147, 0.9395973154362416, 0.087248322147651, 0.087248322147651, 0.087248322147651, 0.087248322147651, 0.087248322147651, 0.087248322147651, 0.087248322147651, 0.087248322147651, 0.087248322147651, 0.087248322147651, 0.09395973154362416, 0.09395973154362416, 0.5906040268456376, 0.8523489932885906, 0.5704697986577181, 0.087248322147651, 0.10067114093959731, 0.10067114093959731, 0.10067114093959731, 0.09395973154362416, 0.09395973154362416, 0.10067114093959731, 0.11409395973154363, 0.12751677852348994, 0.8859060402684564, 0.18120805369127516, 0.6912751677852349, 0.8053691275167785, 0.6912751677852349, 0.18791946308724833, 0.18791946308724833, 0.19463087248322147, 0.174496644295302, 0.14093959731543623, 0.1342281879194631, 0.1342281879194631, 0.12751677852348994, 0.1342281879194631, 0.1342281879194631, 0.1476510067114094, 0.1610738255033557, 0.1610738255033557, 0.16778523489932887, 0.18120805369127516, 0.18791946308724833, 0.21476510067114093, 0.87248322147651, 0.2214765100671141, 0.22818791946308725, 0.26174496644295303, 0.3221476510067114, 0.3288590604026846, 0.3422818791946309, 0.35570469798657717, 0.37583892617449666, 0.3825503355704698, 0.3959731543624161, 0.40939597315436244, 0.4228187919463087, 0.4228187919463087, 0.4563758389261745, 0.47651006711409394, 0.48322147651006714, 0.4899328859060403, 0.4899328859060403, 0.4966442953020134, 0.4966442953020134, 0.5100671140939598, 0.5503355704697986, 0.5503355704697986, 0.5503355704697986, 0.5570469798657718, 0.5570469798657718, 0.5906040268456376, 0.7449664429530202], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/vWF_A.gap.json b/pfam_gap_rates/vWF_A.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b42575401915ba35585129efefb4e63791429a5f
--- /dev/null
+++ b/pfam_gap_rates/vWF_A.gap.json
@@ -0,0 +1 @@
+{"family": "vWF_A", "n_seqs": 212, "length": 95, "gap_rates": [0.6509433962264151, 0.25471698113207547, 0.15566037735849056, 0.1179245283018868, 0.11320754716981132, 0.11320754716981132, 0.09905660377358491, 0.09433962264150944, 0.08962264150943396, 0.08018867924528301, 0.07547169811320754, 0.0660377358490566, 0.0660377358490566, 0.05660377358490566, 0.03773584905660377, 0.02830188679245283, 0.02358490566037736, 0.018867924528301886, 0.014150943396226415, 0.009433962264150943, 0.0047169811320754715, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0047169811320754715, 0.0047169811320754715, 0.0047169811320754715, 0.0047169811320754715, 0.009433962264150943, 0.009433962264150943, 0.009433962264150943, 0.009433962264150943, 0.009433962264150943, 0.009433962264150943, 0.009433962264150943, 0.014150943396226415, 0.018867924528301886, 0.014150943396226415, 0.009433962264150943, 0.009433962264150943, 0.009433962264150943, 0.009433962264150943, 0.009433962264150943, 0.009433962264150943, 0.009433962264150943, 0.009433962264150943, 0.009433962264150943, 0.009433962264150943, 0.009433962264150943, 0.009433962264150943, 0.009433962264150943, 0.009433962264150943, 0.009433962264150943, 0.009433962264150943, 0.009433962264150943, 0.009433962264150943, 0.014150943396226415, 0.014150943396226415, 0.9292452830188679, 0.7169811320754716, 0.018867924528301886, 0.14150943396226415, 0.0330188679245283, 0.014150943396226415, 0.014150943396226415, 0.014150943396226415, 0.014150943396226415, 0.018867924528301886, 0.018867924528301886, 0.018867924528301886, 0.018867924528301886, 0.018867924528301886, 0.018867924528301886, 0.04245283018867924, 0.04716981132075472, 0.04716981132075472, 0.04716981132075472, 0.06132075471698113, 0.0660377358490566, 0.07075471698113207, 0.07075471698113207, 0.07075471698113207, 0.11320754716981132, 0.33962264150943394], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/zf-AD.gap.json b/pfam_gap_rates/zf-AD.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..927c3ceceffc1a12eef48de4591b8da566a696e0
--- /dev/null
+++ b/pfam_gap_rates/zf-AD.gap.json
@@ -0,0 +1 @@
+{"family": "zf-AD", "n_seqs": 1287, "length": 88, "gap_rates": [0.3084693084693085, 0.1111111111111111, 0.11033411033411034, 0.11033411033411034, 0.10955710955710955, 0.10878010878010878, 0.9028749028749029, 0.9440559440559441, 0.8236208236208237, 0.7334887334887334, 0.26884226884226886, 0.14063714063714064, 0.11810411810411811, 0.1111111111111111, 0.1048951048951049, 0.1048951048951049, 0.0979020979020979, 0.09324009324009325, 0.09013209013209013, 0.09401709401709402, 0.09324009324009325, 0.09557109557109557, 0.09557109557109557, 0.9401709401709402, 0.9440559440559441, 0.9370629370629371, 0.17327117327117328, 0.24475524475524477, 0.22377622377622378, 0.790986790986791, 0.9145299145299145, 0.9471639471639471, 0.8477078477078477, 0.6930846930846931, 0.4149184149184149, 0.14607614607614608, 0.08702408702408702, 0.07303807303807304, 0.0675990675990676, 0.05827505827505827, 0.053613053613053616, 0.05128205128205128, 0.046620046620046623, 0.04040404040404041, 0.03885003885003885, 0.03807303807303807, 0.03263403263403263, 0.04040404040404041, 0.04040404040404041, 0.03496503496503497, 0.9168609168609169, 0.885003885003885, 0.029526029526029528, 0.014763014763014764, 0.00777000777000777, 0.008547008547008548, 0.004662004662004662, 0.013986013986013986, 0.013986013986013986, 0.03496503496503497, 0.002331002331002331, 0.000777000777000777, 0.000777000777000777, 0.000777000777000777, 0.000777000777000777, 0.000777000777000777, 0.001554001554001554, 0.002331002331002331, 0.002331002331002331, 0.002331002331002331, 0.003885003885003885, 0.004662004662004662, 0.004662004662004662, 0.00777000777000777, 0.00777000777000777, 0.010101010101010102, 0.010878010878010878, 0.011655011655011656, 0.01554001554001554, 0.017094017094017096, 0.028749028749028748, 0.04351204351204351, 0.059052059052059055, 0.07614607614607614, 0.0979020979020979, 0.12975912975912976, 0.24786324786324787, 0.5167055167055167], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/zf-AN1.gap.json b/pfam_gap_rates/zf-AN1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..6bfd1e41246411575f99a1f12697f665a9f3435e
--- /dev/null
+++ b/pfam_gap_rates/zf-AN1.gap.json
@@ -0,0 +1 @@
+{"family": "zf-AN1", "n_seqs": 1565, "length": 43, "gap_rates": [0.08690095846645367, 0.08434504792332269, 0.34952076677316296, 0.42619808306709267, 0.12779552715654952, 0.02619808306709265, 0.025559105431309903, 0.024920127795527155, 0.022364217252396165, 0.01853035143769968, 0.015335463258785943, 0.019169329073482427, 0.010862619808306708, 0.8460063897763578, 0.94185303514377, 0.4338658146964856, 0.0044728434504792336, 0.0025559105431309905, 0.0025559105431309905, 0.0025559105431309905, 0.3769968051118211, 0.0012779552715654952, 0.0012779552715654952, 0.0, 0.0, 0.0, 0.0, 0.0006389776357827476, 0.0006389776357827476, 0.0006389776357827476, 0.0012779552715654952, 0.0019169329073482429, 0.0076677316293929714, 0.012140575079872205, 0.008306709265175719, 0.007028753993610224, 0.007028753993610224, 0.008306709265175719, 0.01853035143769968, 0.07539936102236422, 0.202555910543131, 0.44536741214057507, 0.7904153354632588], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/zf-ANAPC11.gap.json b/pfam_gap_rates/zf-ANAPC11.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..fee1142b07e721b768969c7f877bdfa67d4f98e2
--- /dev/null
+++ b/pfam_gap_rates/zf-ANAPC11.gap.json
@@ -0,0 +1 @@
+{"family": "zf-ANAPC11", "n_seqs": 299, "length": 97, "gap_rates": [0.44481605351170567, 0.3712374581939799, 0.28762541806020064, 0.22408026755852842, 0.21070234113712374, 0.18729096989966554, 0.15384615384615385, 0.14046822742474915, 0.12709030100334448, 0.12040133779264214, 0.11036789297658862, 0.10367892976588629, 0.10367892976588629, 0.09698996655518395, 0.0903010033444816, 0.0903010033444816, 0.28762541806020064, 0.20735785953177258, 0.1505016722408027, 0.12374581939799331, 0.8494983277591973, 0.8729096989966555, 0.8963210702341137, 0.9163879598662207, 0.9364548494983278, 0.9431438127090301, 0.9331103678929766, 0.9063545150501672, 0.8896321070234113, 0.8695652173913043, 0.802675585284281, 0.15384615384615385, 0.07023411371237458, 0.06354515050167224, 0.06688963210702341, 0.06688963210702341, 0.06688963210702341, 0.06354515050167224, 0.06354515050167224, 0.06020066889632107, 0.06020066889632107, 0.06354515050167224, 0.06354515050167224, 0.06354515050167224, 0.07023411371237458, 0.0802675585284281, 0.08695652173913043, 0.09364548494983277, 0.09364548494983277, 0.09698996655518395, 0.0903010033444816, 0.09698996655518395, 0.11705685618729098, 0.13377926421404682, 0.11371237458193979, 0.11371237458193979, 0.11705685618729098, 0.12040133779264214, 0.13377926421404682, 0.14381270903010032, 0.14381270903010032, 0.14046822742474915, 0.14046822742474915, 0.14381270903010032, 0.14715719063545152, 0.14715719063545152, 0.14715719063545152, 0.1505016722408027, 0.14381270903010032, 0.14381270903010032, 0.14715719063545152, 0.1505016722408027, 0.1505016722408027, 0.1505016722408027, 0.1505016722408027, 0.1505016722408027, 0.1605351170568562, 0.17725752508361203, 0.22408026755852842, 0.939799331103679, 0.26421404682274247, 0.23411371237458195, 0.2040133779264214, 0.17725752508361203, 0.17391304347826086, 0.1705685618729097, 0.17391304347826086, 0.17391304347826086, 0.17391304347826086, 0.1806020066889632, 0.1806020066889632, 0.18729096989966554, 0.20066889632107024, 0.26421404682274247, 0.3612040133779264, 0.4983277591973244, 0.882943143812709], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/zf-C3HC4_3.gap.json b/pfam_gap_rates/zf-C3HC4_3.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..4ec028d638f819aaddfc9bb55d80fb0a3d1cc3bb
--- /dev/null
+++ b/pfam_gap_rates/zf-C3HC4_3.gap.json
@@ -0,0 +1 @@
+{"family": "zf-C3HC4_3", "n_seqs": 5000, "length": 55, "gap_rates": [0.5844, 0.2084, 0.017, 0.0124, 0.0124, 0.0084, 0.0084, 0.0082, 0.008, 0.0106, 0.0056, 0.0056, 0.0038, 0.0028, 0.0026, 0.0026, 0.0748, 0.0004, 0.0004, 0.0002, 0.0, 0.0, 0.4506, 0.0002, 0.0002, 0.0, 0.0004, 0.0004, 0.0004, 0.0012, 0.0016, 0.0026, 0.3366, 0.3278, 0.788, 0.9076, 0.9422, 0.93, 0.8478, 0.6512, 0.3008, 0.2836, 0.016, 0.0162, 0.0162, 0.0164, 0.0172, 0.0212, 0.0246, 0.0404, 0.1042, 0.1844, 0.3368, 0.5948, 0.9324], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/zf-C4.gap.json b/pfam_gap_rates/zf-C4.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..86f1206b8f17ec8c7e4c45c1f7faa94a0d793470
--- /dev/null
+++ b/pfam_gap_rates/zf-C4.gap.json
@@ -0,0 +1 @@
+{"family": "zf-C4", "n_seqs": 2965, "length": 71, "gap_rates": [0.11703204047217539, 0.09713322091062394, 0.09072512647554806, 0.08532883642495784, 0.08499156829679595, 0.08499156829679595, 0.08465430016863407, 0.0836424957841484, 0.08161888701517707, 0.07925801011804384, 0.07790893760539629, 0.07588532883642496, 0.07521079258010117, 0.07352445193929173, 0.07183811129848229, 0.06812816188870152, 0.06509274873524452, 0.06306913996627318, 0.06239460370994941, 0.06205733558178752, 0.06037099494097808, 0.06340640809443508, 0.05497470489038786, 0.05193929173693086, 0.059359190556492414, 0.06003372681281619, 0.05834738617200674, 0.05902192242833052, 0.061720067453625634, 0.06205733558178752, 0.06205733558178752, 0.061720067453625634, 0.06475548060708262, 0.06306913996627318, 0.05834738617200674, 0.8725126475548061, 0.06138279932546374, 0.06374367622259697, 0.06205733558178752, 0.06441821247892074, 0.0745362563237774, 0.9460370994940978, 0.08161888701517707, 0.08296795952782463, 0.07217537942664418, 0.06509274873524452, 0.06812816188870152, 0.07588532883642496, 0.07386172006745363, 0.0745362563237774, 0.0715008431703204, 0.07386172006745363, 0.07554806070826307, 0.07790893760539629, 0.07588532883642496, 0.07622259696458684, 0.07723440134907252, 0.07790893760539629, 0.07824620573355819, 0.07925801011804384, 0.07925801011804384, 0.08026981450252951, 0.08330522765598651, 0.08870151770657674, 0.09038785834738618, 0.0924114671163575, 0.09645868465430017, 0.09983136593591906, 0.10118043844856661, 0.13591905564924114, 0.5163575042158516], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/zf-FLZ.gap.json b/pfam_gap_rates/zf-FLZ.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..1530b2bbf9aa4d82c42bbc6743e15b2238f7703b
--- /dev/null
+++ b/pfam_gap_rates/zf-FLZ.gap.json
@@ -0,0 +1 @@
+{"family": "zf-FLZ", "n_seqs": 553, "length": 52, "gap_rates": [0.8969258589511754, 0.810126582278481, 0.6871609403254972, 0.4918625678119349, 0.36528028933092227, 0.28390596745027125, 0.2332730560578662, 0.189873417721519, 0.16455696202531644, 0.10307414104882459, 0.0705244122965642, 0.05605786618444846, 0.0379746835443038, 0.03616636528028933, 0.03616636528028933, 0.034358047016274866, 0.034358047016274866, 0.034358047016274866, 0.02531645569620253, 0.027124773960216998, 0.02531645569620253, 0.19710669077757687, 0.06148282097649186, 0.023508137432188065, 0.023508137432188065, 0.027124773960216998, 0.023508137432188065, 0.02531645569620253, 0.0216998191681736, 0.0216998191681736, 0.018083182640144666, 0.054249547920433995, 0.0379746835443038, 0.0433996383363472, 0.045207956600361664, 0.048824593128390596, 0.048824593128390596, 0.05063291139240506, 0.05244122965641953, 0.054249547920433995, 0.054249547920433995, 0.054249547920433995, 0.054249547920433995, 0.06148282097649186, 0.0650994575045208, 0.06690777576853527, 0.07775768535262206, 0.08318264014466546, 0.10488245931283906, 0.19529837251356238, 0.3616636528028933, 0.8083182640144665], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/zf-LSD1.gap.json b/pfam_gap_rates/zf-LSD1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c4c14f74f777ca28f20ec3d49f1b562e76b84063
--- /dev/null
+++ b/pfam_gap_rates/zf-LSD1.gap.json
@@ -0,0 +1 @@
+{"family": "zf-LSD1", "n_seqs": 395, "length": 25, "gap_rates": [0.015189873417721518, 0.015189873417721518, 0.015189873417721518, 0.015189873417721518, 0.015189873417721518, 0.015189873417721518, 0.007594936708860759, 0.007594936708860759, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.002531645569620253, 0.04556962025316456, 0.10379746835443038], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/zf-TRM13_CCCH.gap.json b/pfam_gap_rates/zf-TRM13_CCCH.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..60060451bd4af6f67ba5911158444e08a24ee75a
--- /dev/null
+++ b/pfam_gap_rates/zf-TRM13_CCCH.gap.json
@@ -0,0 +1 @@
+{"family": "zf-TRM13_CCCH", "n_seqs": 151, "length": 29, "gap_rates": [0.7483443708609272, 0.152317880794702, 0.026490066225165563, 0.026490066225165563, 0.013245033112582781, 0.013245033112582781, 0.013245033112582781, 0.006622516556291391, 0.006622516556291391, 0.006622516556291391, 0.0, 0.0, 0.0, 0.0, 0.0, 0.006622516556291391, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.006622516556291391, 0.006622516556291391, 0.006622516556291391, 0.006622516556291391, 0.006622516556291391, 0.3576158940397351], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/zf-XS.gap.json b/pfam_gap_rates/zf-XS.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..1a3c3bff43d4d046fff6fe83fc5b077d3bd716e5
--- /dev/null
+++ b/pfam_gap_rates/zf-XS.gap.json
@@ -0,0 +1 @@
+{"family": "zf-XS", "n_seqs": 201, "length": 47, "gap_rates": [0.014925373134328358, 0.014925373134328358, 0.014925373134328358, 0.014925373134328358, 0.014925373134328358, 0.014925373134328358, 0.014925373134328358, 0.014925373134328358, 0.03980099502487562, 0.11442786069651742, 0.029850746268656716, 0.746268656716418, 0.7263681592039801, 0.0, 0.0, 0.746268656716418, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.27860696517412936, 0.2537313432835821, 0.24875621890547264, 0.3582089552238806, 0.3482587064676617, 0.7263681592039801, 0.26865671641791045, 0.39800995024875624, 0.024875621890547265, 0.01990049751243781, 0.01990049751243781, 0.01990049751243781, 0.01990049751243781, 0.01990049751243781, 0.014925373134328358, 0.014925373134328358, 0.029850746268656716, 0.03980099502487562, 0.24378109452736318], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/zf-like.gap.json b/pfam_gap_rates/zf-like.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..5202ae5f4354557eacbb2793098f72c4307d6cde
--- /dev/null
+++ b/pfam_gap_rates/zf-like.gap.json
@@ -0,0 +1 @@
+{"family": "zf-like", "n_seqs": 143, "length": 89, "gap_rates": [0.6433566433566433, 0.35664335664335667, 0.1888111888111888, 0.16783216783216784, 0.13986013986013987, 0.0979020979020979, 0.06293706293706294, 0.055944055944055944, 0.04895104895104895, 0.04895104895104895, 0.04895104895104895, 0.04895104895104895, 0.04895104895104895, 0.04895104895104895, 0.04895104895104895, 0.04895104895104895, 0.04895104895104895, 0.23076923076923078, 0.04895104895104895, 0.04195804195804196, 0.5384615384615384, 0.04195804195804196, 0.4195804195804196, 0.8601398601398601, 0.27972027972027974, 0.03496503496503497, 0.03496503496503497, 0.03496503496503497, 0.02097902097902098, 0.02097902097902098, 0.02097902097902098, 0.02097902097902098, 0.02097902097902098, 0.02097902097902098, 0.03496503496503497, 0.07692307692307693, 0.04895104895104895, 0.1888111888111888, 0.16783216783216784, 0.027972027972027972, 0.013986013986013986, 0.013986013986013986, 0.9230769230769231, 0.013986013986013986, 0.013986013986013986, 0.02097902097902098, 0.02097902097902098, 0.9440559440559441, 0.9440559440559441, 0.03496503496503497, 0.09090909090909091, 0.02097902097902098, 0.02097902097902098, 0.027972027972027972, 0.6223776223776224, 0.5664335664335665, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.03496503496503497, 0.08391608391608392, 0.1048951048951049, 0.1048951048951049, 0.1048951048951049, 0.1048951048951049, 0.1048951048951049, 0.1048951048951049, 0.1048951048951049, 0.1258741258741259, 0.17482517482517482, 0.1958041958041958, 0.23776223776223776, 0.3076923076923077, 0.3356643356643357, 0.3776223776223776, 0.3916083916083916, 0.4405594405594406, 0.4825174825174825, 0.6573426573426573, 0.8671328671328671], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file