diff --git a/pfam_gap_rates/2-oxoacid_dh.gap.json b/pfam_gap_rates/2-oxoacid_dh.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..54de112d9f27373153df421713f717c79760ced2
--- /dev/null
+++ b/pfam_gap_rates/2-oxoacid_dh.gap.json
@@ -0,0 +1 @@
+{"family": "2-oxoacid_dh", "n_seqs": 4884, "length": 246, "gap_rates": [0.9242424242424242, 0.5290745290745291, 0.31367731367731366, 0.19082719082719082, 0.14864864864864866, 0.12039312039312039, 0.10851760851760851, 0.09664209664209664, 0.0904995904995905, 0.08579033579033579, 0.0819000819000819, 0.08108108108108109, 0.07985257985257985, 0.07903357903357904, 0.0773955773955774, 0.07678132678132678, 0.07637182637182637, 0.07596232596232597, 0.07452907452907453, 0.07411957411957412, 0.0735053235053235, 0.07248157248157248, 0.07248157248157248, 0.2203112203112203, 0.07268632268632269, 0.07125307125307126, 0.06920556920556921, 0.06859131859131859, 0.06695331695331695, 0.06572481572481573, 0.06531531531531531, 0.06408681408681409, 0.06367731367731368, 0.06265356265356266, 0.06265356265356266, 0.06203931203931204, 0.060810810810810814, 0.05999180999180999, 0.05999180999180999, 0.0604013104013104, 0.05999180999180999, 0.05978705978705979, 0.06838656838656838, 0.06961506961506962, 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\ No newline at end of file
diff --git a/pfam_gap_rates/2-oxogl_dehyd_N.gap.json b/pfam_gap_rates/2-oxogl_dehyd_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b3a6a04e6346a0cc4454c0e62c3111d7be346996
--- /dev/null
+++ b/pfam_gap_rates/2-oxogl_dehyd_N.gap.json
@@ -0,0 +1 @@
+{"family": "2-oxogl_dehyd_N", "n_seqs": 1227, "length": 40, "gap_rates": [0.5859820700896495, 0.33088834555827223, 0.29665851670741644, 0.24938875305623473, 0.10024449877750612, 0.06927465362673187, 0.05460472697636512, 0.039119804400977995, 0.03178484107579462, 0.027709861450692746, 0.026079869600651995, 0.015484922575387123, 0.014669926650366748, 0.013039934800325998, 0.0008149959250203749, 0.0008149959250203749, 0.0008149959250203749, 0.0008149959250203749, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0008149959250203749, 0.0016299918500407497, 0.0016299918500407497, 0.0024449877750611247, 0.008149959250203748, 0.010594947025264874, 0.013039934800325998, 0.020374898125509373, 0.03667481662591687, 0.07660961695191525, 0.11491442542787286, 0.2371638141809291, 0.5240423797881011], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/4_1_CTD.gap.json b/pfam_gap_rates/4_1_CTD.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..1d03f4f2749c13b6612ce468a093255a3cd82fc1
--- /dev/null
+++ b/pfam_gap_rates/4_1_CTD.gap.json
@@ -0,0 +1 @@
+{"family": "4_1_CTD", "n_seqs": 125, "length": 113, "gap_rates": [0.56, 0.416, 0.352, 0.32, 0.312, 0.304, 0.296, 0.288, 0.288, 0.288, 0.288, 0.288, 0.288, 0.288, 0.288, 0.288, 0.288, 0.288, 0.896, 0.928, 0.928, 0.896, 0.376, 0.352, 0.344, 0.296, 0.248, 0.76, 0.208, 0.184, 0.184, 0.168, 0.128, 0.128, 0.112, 0.104, 0.104, 0.088, 0.088, 0.088, 0.08, 0.072, 0.072, 0.072, 0.072, 0.072, 0.072, 0.072, 0.072, 0.072, 0.072, 0.064, 0.064, 0.352, 0.352, 0.04, 0.04, 0.04, 0.04, 0.048, 0.048, 0.048, 0.048, 0.048, 0.048, 0.048, 0.048, 0.048, 0.048, 0.048, 0.048, 0.048, 0.048, 0.048, 0.048, 0.048, 0.048, 0.056, 0.056, 0.8, 0.056, 0.056, 0.048, 0.056, 0.032, 0.04, 0.064, 0.064, 0.08, 0.08, 0.08, 0.08, 0.08, 0.08, 0.088, 0.08, 0.08, 0.088, 0.088, 0.088, 0.088, 0.088, 0.104, 0.104, 0.104, 0.104, 0.104, 0.112, 0.112, 0.112, 0.12, 0.192, 0.4], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/5-nucleotidase.gap.json b/pfam_gap_rates/5-nucleotidase.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..790523b635ffa14ebbd22fc4593eb038f086151e
--- /dev/null
+++ b/pfam_gap_rates/5-nucleotidase.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/7TM_GPCR_Srbc.gap.json b/pfam_gap_rates/7TM_GPCR_Srbc.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..58a174fa3d73250769022386bd08fd1f1bf3d550
--- /dev/null
+++ b/pfam_gap_rates/7TM_GPCR_Srbc.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/7TM_GPCR_Srw.gap.json b/pfam_gap_rates/7TM_GPCR_Srw.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..bf01975646a43a64fe875236c283d8d00a0c128a
--- /dev/null
+++ b/pfam_gap_rates/7TM_GPCR_Srw.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/AAA-ATPase_like.gap.json b/pfam_gap_rates/AAA-ATPase_like.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..eaed9b7dea2d891dd513523e4b6aca14167a8270
--- /dev/null
+++ b/pfam_gap_rates/AAA-ATPase_like.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/AAA_11.gap.json b/pfam_gap_rates/AAA_11.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..2ae28cc2b99273e757ca0c6c9cabefd64a20236c
--- /dev/null
+++ b/pfam_gap_rates/AAA_11.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/AAA_12.gap.json b/pfam_gap_rates/AAA_12.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..8488b2a459fc4d89bbde9c0107a59bf60fe04f41
--- /dev/null
+++ b/pfam_gap_rates/AAA_12.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/AAA_17.gap.json b/pfam_gap_rates/AAA_17.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a6631b8116e83b4afee922ac8a0a4b6cb7511ae4
--- /dev/null
+++ b/pfam_gap_rates/AAA_17.gap.json
@@ -0,0 +1 @@
+{"family": "AAA_17", "n_seqs": 425, "length": 158, "gap_rates": [0.2564705882352941, 0.07529411764705882, 0.058823529411764705, 0.04, 0.02823529411764706, 0.009411764705882352, 0.004705882352941176, 0.004705882352941176, 0.004705882352941176, 0.01647058823529412, 0.007058823529411765, 0.004705882352941176, 0.16705882352941176, 0.004705882352941176, 0.004705882352941176, 0.009411764705882352, 0.007058823529411765, 0.009411764705882352, 0.01411764705882353, 0.8941176470588236, 0.9058823529411765, 0.8658823529411764, 0.004705882352941176, 0.004705882352941176, 0.007058823529411765, 0.004705882352941176, 0.004705882352941176, 0.004705882352941176, 0.03294117647058824, 0.01411764705882353, 0.009411764705882352, 0.009411764705882352, 0.009411764705882352, 0.01647058823529412, 0.01411764705882353, 0.021176470588235293, 0.04470588235294118, 0.03058823529411765, 0.03058823529411765, 0.018823529411764704, 0.8635294117647059, 0.03529411764705882, 0.9294117647058824, 0.9317647058823529, 0.9176470588235294, 0.05411764705882353, 0.8917647058823529, 0.7341176470588235, 0.23529411764705882, 0.21176470588235294, 0.15764705882352942, 0.1411764705882353, 0.058823529411764705, 0.058823529411764705, 0.05411764705882353, 0.06588235294117648, 0.8682352941176471, 0.9388235294117647, 0.9435294117647058, 0.8941176470588236, 0.8141176470588235, 0.06823529411764706, 0.06588235294117648, 0.06823529411764706, 0.08, 0.05176470588235294, 0.05176470588235294, 0.04941176470588235, 0.05647058823529412, 0.05176470588235294, 0.05176470588235294, 0.04941176470588235, 0.05411764705882353, 0.05411764705882353, 0.05176470588235294, 0.05647058823529412, 0.06588235294117648, 0.0611764705882353, 0.058823529411764705, 0.9364705882352942, 0.9341176470588235, 0.05647058823529412, 0.07764705882352942, 0.16705882352941176, 0.21176470588235294, 0.7741176470588236, 0.92, 0.8964705882352941, 0.64, 0.12941176470588237, 0.09647058823529411, 0.07294117647058823, 0.0611764705882353, 0.0611764705882353, 0.06352941176470588, 0.06352941176470588, 0.07058823529411765, 0.07058823529411765, 0.07058823529411765, 0.07529411764705882, 0.10352941176470588, 0.17882352941176471, 0.30823529411764705, 0.2635294117647059, 0.26588235294117646, 0.2164705882352941, 0.21411764705882352, 0.3035294117647059, 0.2988235294117647, 0.28941176470588237, 0.24705882352941178, 0.1976470588235294, 0.19058823529411764, 0.23529411764705882, 0.31529411764705884, 0.3388235294117647, 0.30117647058823527, 0.20705882352941177, 0.15058823529411763, 0.14352941176470588, 0.3458823529411765, 0.32941176470588235, 0.8917647058823529, 0.2235294117647059, 0.10823529411764705, 0.10588235294117647, 0.10823529411764705, 0.10588235294117647, 0.10823529411764705, 0.10588235294117647, 0.10823529411764705, 0.10823529411764705, 0.10823529411764705, 0.11764705882352941, 0.13647058823529412, 0.12941176470588237, 0.11294117647058824, 0.11294117647058824, 0.11529411764705882, 0.12705882352941175, 0.12941176470588237, 0.14352941176470588, 0.30117647058823527, 0.7388235294117647, 0.2988235294117647, 0.28, 0.20941176470588235, 0.2235294117647059, 0.24, 0.25882352941176473, 0.2823529411764706, 0.32235294117647056, 0.3623529411764706, 0.4117647058823529, 0.4423529411764706, 0.47058823529411764, 0.5270588235294118, 0.6588235294117647], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/AAL_decarboxy.gap.json b/pfam_gap_rates/AAL_decarboxy.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..170ef2d82daba2c7a9df62102f76e2eddc2b1d03
--- /dev/null
+++ b/pfam_gap_rates/AAL_decarboxy.gap.json
@@ -0,0 +1 @@
+{"family": "AAL_decarboxy", "n_seqs": 279, "length": 227, "gap_rates": [0.1971326164874552, 0.16129032258064516, 0.15770609318996415, 0.14695340501792115, 0.14695340501792115, 0.14336917562724014, 0.12186379928315412, 0.11469534050179211, 0.1003584229390681, 0.0967741935483871, 0.0931899641577061, 0.08602150537634409, 0.08602150537634409, 0.08602150537634409, 0.08602150537634409, 0.08243727598566308, 0.07526881720430108, 0.07526881720430108, 0.07526881720430108, 0.07168458781362007, 0.07168458781362007, 0.07168458781362007, 0.07168458781362007, 0.07168458781362007, 0.07168458781362007, 0.06810035842293907, 0.06451612903225806, 0.06451612903225806, 0.06093189964157706, 0.06093189964157706, 0.06093189964157706, 0.06093189964157706, 0.06093189964157706, 0.06093189964157706, 0.06093189964157706, 0.06093189964157706, 0.06451612903225806, 0.06810035842293907, 0.06451612903225806, 0.06093189964157706, 0.06093189964157706, 0.053763440860215055, 0.053763440860215055, 0.053763440860215055, 0.05734767025089606, 0.053763440860215055, 0.053763440860215055, 0.053763440860215055, 0.053763440860215055, 0.053763440860215055, 0.053763440860215055, 0.053763440860215055, 0.06093189964157706, 0.06451612903225806, 0.05734767025089606, 0.06093189964157706, 0.06093189964157706, 0.06093189964157706, 0.06093189964157706, 0.06093189964157706, 0.06093189964157706, 0.06093189964157706, 0.06093189964157706, 0.06451612903225806, 0.06451612903225806, 0.9283154121863799, 0.8817204301075269, 0.06451612903225806, 0.06810035842293907, 0.06810035842293907, 0.07168458781362007, 0.07168458781362007, 0.06810035842293907, 0.06093189964157706, 0.06093189964157706, 0.06093189964157706, 0.06093189964157706, 0.06093189964157706, 0.06451612903225806, 0.06093189964157706, 0.07526881720430108, 0.06451612903225806, 0.06451612903225806, 0.06093189964157706, 0.06451612903225806, 0.06451612903225806, 0.921146953405018, 0.07526881720430108, 0.31899641577060933, 0.07168458781362007, 0.06451612903225806, 0.06451612903225806, 0.06093189964157706, 0.06093189964157706, 0.06093189964157706, 0.06093189964157706, 0.06093189964157706, 0.06093189964157706, 0.06093189964157706, 0.06093189964157706, 0.06093189964157706, 0.06810035842293907, 0.06810035842293907, 0.10752688172043011, 0.07168458781362007, 0.06451612903225806, 0.9247311827956989, 0.9498207885304659, 0.8315412186379928, 0.06093189964157706, 0.06093189964157706, 0.06093189964157706, 0.06093189964157706, 0.06093189964157706, 0.06093189964157706, 0.06093189964157706, 0.06093189964157706, 0.05734767025089606, 0.05734767025089606, 0.05734767025089606, 0.05734767025089606, 0.05734767025089606, 0.06810035842293907, 0.05734767025089606, 0.05734767025089606, 0.05734767025089606, 0.06810035842293907, 0.07526881720430108, 0.07526881720430108, 0.07526881720430108, 0.07526881720430108, 0.10752688172043011, 0.07526881720430108, 0.07885304659498207, 0.11827956989247312, 0.0931899641577061, 0.08960573476702509, 0.08243727598566308, 0.08243727598566308, 0.07885304659498207, 0.07885304659498207, 0.07885304659498207, 0.08602150537634409, 0.08960573476702509, 0.08602150537634409, 0.9498207885304659, 0.08243727598566308, 0.07885304659498207, 0.07168458781362007, 0.07526881720430108, 0.06810035842293907, 0.06451612903225806, 0.06093189964157706, 0.06093189964157706, 0.06451612903225806, 0.06093189964157706, 0.06093189964157706, 0.06093189964157706, 0.06093189964157706, 0.06093189964157706, 0.06093189964157706, 0.06093189964157706, 0.05734767025089606, 0.05734767025089606, 0.05734767025089606, 0.05734767025089606, 0.05734767025089606, 0.053763440860215055, 0.053763440860215055, 0.053763440860215055, 0.053763440860215055, 0.053763440860215055, 0.053763440860215055, 0.05017921146953405, 0.05017921146953405, 0.05017921146953405, 0.05017921146953405, 0.05017921146953405, 0.05017921146953405, 0.05017921146953405, 0.05017921146953405, 0.05017921146953405, 0.05017921146953405, 0.05017921146953405, 0.05017921146953405, 0.05017921146953405, 0.05017921146953405, 0.053763440860215055, 0.05017921146953405, 0.05017921146953405, 0.05017921146953405, 0.05017921146953405, 0.05017921146953405, 0.05734767025089606, 0.05734767025089606, 0.05734767025089606, 0.8853046594982079, 0.05734767025089606, 0.06451612903225806, 0.06451612903225806, 0.06810035842293907, 0.07168458781362007, 0.07526881720430108, 0.0931899641577061, 0.0967741935483871, 0.1003584229390681, 0.1003584229390681, 0.10752688172043011, 0.10752688172043011, 0.1111111111111111, 0.11469534050179211, 0.11827956989247312, 0.12186379928315412, 0.12186379928315412, 0.12544802867383512, 0.7168458781362007, 0.14695340501792115, 0.15412186379928317, 0.16487455197132617, 0.16845878136200718, 0.16845878136200718, 0.17204301075268819, 0.17204301075268819, 0.18996415770609318, 0.2007168458781362, 0.23297491039426524, 0.4157706093189964], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/AAR2.gap.json b/pfam_gap_rates/AAR2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f96447419d505aad32ef14e5a085680ba6cf9685
--- /dev/null
+++ b/pfam_gap_rates/AAR2.gap.json
@@ -0,0 +1 @@
+{"family": "AAR2", "n_seqs": 302, "length": 525, "gap_rates": [0.4304635761589404, 0.3211920529801324, 0.2814569536423841, 0.25496688741721857, 0.24503311258278146, 0.2251655629139073, 0.2251655629139073, 0.2152317880794702, 0.2119205298013245, 0.2119205298013245, 0.20860927152317882, 0.20198675496688742, 0.2052980132450331, 0.18211920529801323, 0.18211920529801323, 0.18211920529801323, 0.18211920529801323, 0.18211920529801323, 0.17880794701986755, 0.17880794701986755, 0.18211920529801323, 0.17880794701986755, 0.17880794701986755, 0.17549668874172186, 0.17218543046357615, 0.17218543046357615, 0.23178807947019867, 0.9337748344370861, 0.17218543046357615, 0.17218543046357615, 0.17218543046357615, 0.17218543046357615, 0.17218543046357615, 0.15562913907284767, 0.152317880794702, 0.152317880794702, 0.1490066225165563, 0.1490066225165563, 0.1490066225165563, 0.1490066225165563, 0.1490066225165563, 0.1490066225165563, 0.1490066225165563, 0.1490066225165563, 0.152317880794702, 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\ No newline at end of file
diff --git a/pfam_gap_rates/ABA_GPCR.gap.json b/pfam_gap_rates/ABA_GPCR.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..df0b522f9cc5dc2fd5e7ae51d9d4ff107f34a3a8
--- /dev/null
+++ b/pfam_gap_rates/ABA_GPCR.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/ABC_ATPase.gap.json b/pfam_gap_rates/ABC_ATPase.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f1c5e16eabdf85147e6b044a3a5c358c8c8e6342
--- /dev/null
+++ b/pfam_gap_rates/ABC_ATPase.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/ABC_tran_Xtn.gap.json b/pfam_gap_rates/ABC_tran_Xtn.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..38ca926449f55dac4afd1eb9b12ae965bb624cc4
--- /dev/null
+++ b/pfam_gap_rates/ABC_tran_Xtn.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/ABC_trans_N.gap.json b/pfam_gap_rates/ABC_trans_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d402dec40e160d2509822e0aebfe1282286184b8
--- /dev/null
+++ b/pfam_gap_rates/ABC_trans_N.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/ABC_transp_aux.gap.json b/pfam_gap_rates/ABC_transp_aux.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e1c11befe78ed3e428ba414e1ed553a96cc30ca4
--- /dev/null
+++ b/pfam_gap_rates/ABC_transp_aux.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/ACP.gap.json b/pfam_gap_rates/ACP.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..4cf34448f240420fb792de9625f9796063962edc
--- /dev/null
+++ b/pfam_gap_rates/ACP.gap.json
@@ -0,0 +1 @@
+{"family": "ACP", "n_seqs": 279, "length": 84, "gap_rates": [0.8888888888888888, 0.3655913978494624, 0.15053763440860216, 0.07885304659498207, 0.043010752688172046, 0.03225806451612903, 0.02867383512544803, 0.02867383512544803, 0.02867383512544803, 0.02867383512544803, 0.021505376344086023, 0.010752688172043012, 0.010752688172043012, 0.007168458781362007, 0.007168458781362007, 0.007168458781362007, 0.007168458781362007, 0.007168458781362007, 0.007168458781362007, 0.007168458781362007, 0.007168458781362007, 0.8028673835125448, 0.4157706093189964, 0.12544802867383512, 0.010752688172043012, 0.0035842293906810036, 0.0035842293906810036, 0.0035842293906810036, 0.0035842293906810036, 0.0035842293906810036, 0.0035842293906810036, 0.0035842293906810036, 0.0035842293906810036, 0.0035842293906810036, 0.0035842293906810036, 0.3225806451612903, 0.007168458781362007, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.07885304659498207, 0.010752688172043012, 0.007168458781362007, 0.0035842293906810036, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0035842293906810036, 0.0035842293906810036, 0.0035842293906810036, 0.0035842293906810036, 0.0035842293906810036, 0.0035842293906810036, 0.0035842293906810036, 0.0035842293906810036, 0.0035842293906810036, 0.0035842293906810036, 0.0035842293906810036, 0.0035842293906810036, 0.0035842293906810036, 0.014336917562724014, 0.1111111111111111, 0.5412186379928315], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/AC_N.gap.json b/pfam_gap_rates/AC_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e020c17a4b51802c3cc1e52a4a7eb8c7362b09a6
--- /dev/null
+++ b/pfam_gap_rates/AC_N.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/ADP_ribosyl_GH.gap.json b/pfam_gap_rates/ADP_ribosyl_GH.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..fe4d7df7f2eb183c4247f6fed50a534aed44bb34
--- /dev/null
+++ b/pfam_gap_rates/ADP_ribosyl_GH.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/AHSA1.gap.json b/pfam_gap_rates/AHSA1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..1ca59532d2fd3f629112d5bb2eb7f4874d84a529
--- /dev/null
+++ b/pfam_gap_rates/AHSA1.gap.json
@@ -0,0 +1 @@
+{"family": "AHSA1", "n_seqs": 2886, "length": 164, "gap_rates": [0.6576576576576577, 0.22972972972972974, 0.09598059598059598, 0.06271656271656272, 0.04954954954954955, 0.04227304227304227, 0.0395010395010395, 0.03465003465003465, 0.033264033264033266, 0.03291753291753292, 0.031185031185031187, 0.031185031185031187, 0.031185031185031187, 0.034303534303534305, 0.06791406791406791, 0.06618156618156618, 0.039154539154539154, 0.036036036036036036, 0.030145530145530147, 0.024255024255024255, 0.567914067914068, 0.5814275814275814, 0.8731808731808732, 0.6198891198891199, 0.577962577962578, 0.5498960498960499, 0.3794178794178794, 0.18607068607068608, 0.07692307692307693, 0.06826056826056826, 0.02252252252252252, 0.022176022176022176, 0.020443520443520442, 0.019404019404019403, 0.020443520443520442, 0.01697851697851698, 0.939015939015939, 0.028066528066528068, 0.02182952182952183, 0.9438669438669439, 0.9331254331254332, 0.012474012474012475, 0.016632016632016633, 0.013167013167013167, 0.012474012474012475, 0.012127512127512128, 0.012127512127512128, 0.8218988218988219, 0.9345114345114345, 0.5384615384615384, 0.40644490644490644, 0.37352737352737353, 0.35654885654885654, 0.24497574497574498, 0.19611919611919612, 0.18156618156618157, 0.16805266805266805, 0.14137214137214138, 0.025294525294525295, 0.01975051975051975, 0.021136521136521137, 0.02668052668052668, 0.04712404712404712, 0.05266805266805267, 0.7962577962577962, 0.9404019404019404, 0.9282744282744283, 0.7564102564102564, 0.019404019404019403, 0.010395010395010396, 0.00693000693000693, 0.007623007623007623, 0.00796950796950797, 0.009009009009009009, 0.011088011088011088, 0.009702009702009701, 0.007623007623007623, 0.00693000693000693, 0.006583506583506584, 0.007276507276507277, 0.007276507276507277, 0.030145530145530147, 0.09667359667359668, 0.12612612612612611, 0.11261261261261261, 0.9421344421344421, 0.8537768537768538, 0.2176022176022176, 0.2785862785862786, 0.2726957726957727, 0.31774081774081775, 0.6860706860706861, 0.8142758142758143, 0.9033264033264033, 0.9410949410949411, 0.9483714483714484, 0.9452529452529452, 0.9338184338184338, 0.8482328482328483, 0.770963270963271, 0.6379071379071379, 0.13374913374913375, 0.15419265419265418, 0.01697851697851698, 0.013167013167013167, 0.010741510741510741, 0.010395010395010396, 0.010048510048510048, 0.010048510048510048, 0.010048510048510048, 0.010395010395010396, 0.010395010395010396, 0.010395010395010396, 0.7439362439362439, 0.010741510741510741, 0.012127512127512128, 0.012127512127512128, 0.01178101178101178, 0.012127512127512128, 0.012474012474012475, 0.01282051282051282, 0.013513513513513514, 0.015246015246015246, 0.015592515592515593, 0.01593901593901594, 0.691961191961192, 0.9365904365904366, 0.7266112266112266, 0.674982674982675, 0.021136521136521137, 0.039154539154539154, 0.039154539154539154, 0.037422037422037424, 0.038808038808038806, 0.0395010395010395, 0.04227304227304227, 0.05058905058905059, 0.058212058212058215, 0.0595980595980596, 0.3232848232848233, 0.4227304227304227, 0.7907137907137907, 0.875952875952876, 0.922037422037422, 0.8291753291753292, 0.7394317394317395, 0.057865557865557866, 0.05162855162855163, 0.04816354816354816, 0.04816354816354816, 0.05024255024255024, 0.0550935550935551, 0.058212058212058215, 0.0641025641025641, 0.06999306999306999, 0.8551628551628552, 0.09009009009009009, 0.10152460152460152, 0.1088011088011088, 0.1257796257796258, 0.16493416493416493, 0.21794871794871795, 0.3031878031878032, 0.7543312543312544], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/AI-2E_transport.gap.json b/pfam_gap_rates/AI-2E_transport.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..8815c8c7d91621e9e6503d8e77d5c5b52bc3deec
--- /dev/null
+++ b/pfam_gap_rates/AI-2E_transport.gap.json
@@ -0,0 +1 @@
+{"family": "AI-2E_transport", "n_seqs": 5000, "length": 359, "gap_rates": [0.8028, 0.6384, 0.4952, 0.3772, 0.3002, 0.2564, 0.223, 0.1996, 0.1786, 0.1656, 0.1564, 0.1484, 0.1422, 0.143, 0.1466, 0.1468, 0.1464, 0.1344, 0.676, 0.8982, 0.919, 0.937, 0.913, 0.7248, 0.6524, 0.251, 0.1058, 0.1028, 0.1012, 0.0964, 0.0954, 0.095, 0.0942, 0.0942, 0.0942, 0.0934, 0.0934, 0.0928, 0.093, 0.092, 0.0916, 0.0912, 0.0906, 0.0902, 0.0902, 0.09, 0.0896, 0.0882, 0.6616, 0.1476, 0.0912, 0.0842, 0.0786, 0.077, 0.077, 0.0742, 0.0742, 0.0736, 0.0728, 0.0724, 0.072, 0.0718, 0.0722, 0.0708, 0.0702, 0.0698, 0.0694, 0.0686, 0.0676, 0.0682, 0.0678, 0.0672, 0.0668, 0.0676, 0.0666, 0.067, 0.067, 0.0672, 0.0682, 0.2034, 0.188, 0.1834, 0.177, 0.0762, 0.0716, 0.0704, 0.0684, 0.0682, 0.0672, 0.0672, 0.067, 0.0672, 0.067, 0.0672, 0.8562, 0.8834, 0.9152, 0.9386, 0.9438, 0.9254, 0.9082, 0.8676, 0.8492, 0.0832, 0.0854, 0.083, 0.0798, 0.0782, 0.0782, 0.081, 0.0788, 0.0766, 0.0776, 0.0734, 0.0744, 0.0746, 0.0746, 0.0988, 0.0894, 0.086, 0.0868, 0.0918, 0.0986, 0.2734, 0.5944, 0.4088, 0.6382, 0.741, 0.8452, 0.9188, 0.9426, 0.8772, 0.7926, 0.6818, 0.5374, 0.367, 0.27, 0.2314, 0.178, 0.1472, 0.1314, 0.1168, 0.0988, 0.091, 0.0808, 0.0776, 0.0732, 0.0716, 0.072, 0.0742, 0.0764, 0.0798, 0.0776, 0.0728, 0.064, 0.8602, 0.9306, 0.947, 0.8758, 0.8424, 0.0568, 0.0546, 0.0516, 0.0494, 0.0484, 0.0482, 0.0496, 0.048, 0.0476, 0.0492, 0.0486, 0.05, 0.0916, 0.0624, 0.0604, 0.0576, 0.0448, 0.043, 0.0422, 0.0412, 0.0402, 0.0402, 0.0406, 0.0398, 0.0392, 0.039, 0.0392, 0.0382, 0.0388, 0.0384, 0.0388, 0.0384, 0.039, 0.0396, 0.041, 0.0418, 0.0422, 0.0426, 0.0416, 0.043, 0.0418, 0.0596, 0.053, 0.0474, 0.0424, 0.0454, 0.198, 0.0644, 0.0498, 0.0442, 0.0444, 0.0422, 0.0418, 0.0404, 0.0408, 0.0392, 0.0378, 0.038, 0.038, 0.0378, 0.0662, 0.0554, 0.0514, 0.0418, 0.0348, 0.034, 0.0342, 0.0342, 0.0342, 0.034, 0.034, 0.0338, 0.0338, 0.0336, 0.034, 0.034, 0.0336, 0.0338, 0.0336, 0.0338, 0.0338, 0.0336, 0.0336, 0.0338, 0.0336, 0.0334, 0.0334, 0.0334, 0.0374, 0.0338, 0.0384, 0.0332, 0.0332, 0.033, 0.033, 0.0332, 0.0332, 0.0326, 0.0324, 0.0324, 0.0326, 0.0322, 0.032, 0.0506, 0.0324, 0.034, 0.0372, 0.041, 0.0352, 0.0326, 0.0326, 0.033, 0.0318, 0.0318, 0.0314, 0.0314, 0.2284, 0.0726, 0.034, 0.0328, 0.0332, 0.0336, 0.0344, 0.0344, 0.034, 0.0338, 0.9164, 0.77, 0.2758, 0.0374, 0.0334, 0.0332, 0.0342, 0.034, 0.034, 0.0346, 0.0338, 0.0348, 0.0346, 0.0348, 0.034, 0.0338, 0.035, 0.0344, 0.0348, 0.0368, 0.0558, 0.0334, 0.0326, 0.0324, 0.0324, 0.0346, 0.0332, 0.0326, 0.032, 0.032, 0.032, 0.0336, 0.0362, 0.0368, 0.0344, 0.0316, 0.0314, 0.0312, 0.0316, 0.0316, 0.0316, 0.0318, 0.0318, 0.0322, 0.0324, 0.0324, 0.0326, 0.0328, 0.033, 0.0328, 0.0358, 0.036, 0.0336, 0.0338, 0.034, 0.034, 0.0346, 0.0354, 0.0354, 0.0356, 0.0358, 0.036, 0.0362, 0.0382, 0.0414, 0.0448, 0.0568, 0.0812, 0.1132, 0.1728, 0.2736, 0.4548, 0.7234], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/ALF.gap.json b/pfam_gap_rates/ALF.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..26c083462d2e9085d6c07ebdf43060269bfbb390
--- /dev/null
+++ b/pfam_gap_rates/ALF.gap.json
@@ -0,0 +1 @@
+{"family": "ALF", "n_seqs": 151, "length": 45, "gap_rates": [0.271523178807947, 0.2119205298013245, 0.17880794701986755, 0.13245033112582782, 0.11258278145695365, 0.08609271523178808, 0.0728476821192053, 0.059602649006622516, 0.046357615894039736, 0.8609271523178808, 0.8344370860927153, 0.026490066225165563, 0.026490066225165563, 0.8609271523178808, 0.019867549668874173, 0.006622516556291391, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.052980132450331126, 0.5496688741721855, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.006622516556291391, 0.006622516556291391, 0.033112582781456956, 0.052980132450331126, 0.07947019867549669, 0.11920529801324503, 0.2251655629139073, 0.32450331125827814], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/ANAPC5.gap.json b/pfam_gap_rates/ANAPC5.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..942309b0f7efc2bc54cd5cae9667d132de69f09c
--- /dev/null
+++ b/pfam_gap_rates/ANAPC5.gap.json
@@ -0,0 +1 @@
+{"family": "ANAPC5", "n_seqs": 418, "length": 106, "gap_rates": [0.6220095693779905, 0.5598086124401914, 0.5454545454545454, 0.5191387559808612, 0.5047846889952153, 0.48325358851674644, 0.47607655502392343, 0.4688995215311005, 0.45215311004784686, 0.43301435406698563, 0.42105263157894735, 0.4090909090909091, 0.4043062200956938, 0.40669856459330145, 0.3875598086124402, 0.3827751196172249, 0.3660287081339713, 0.3660287081339713, 0.36363636363636365, 0.361244019138756, 0.361244019138756, 0.3660287081339713, 0.361244019138756, 0.37320574162679426, 0.37799043062200954, 0.37559808612440193, 0.3708133971291866, 0.3708133971291866, 0.3684210526315789, 0.3684210526315789, 0.37320574162679426, 0.37320574162679426, 0.3444976076555024, 0.33253588516746413, 0.3397129186602871, 0.6507177033492823, 0.722488038277512, 0.7416267942583732, 0.777511961722488, 0.8325358851674641, 0.8660287081339713, 0.937799043062201, 0.9449760765550239, 0.9234449760765551, 0.84688995215311, 0.784688995215311, 0.7631578947368421, 0.7344497607655502, 0.7177033492822966, 0.5861244019138756, 0.5047846889952153, 0.2799043062200957, 0.2631578947368421, 0.24880382775119617, 0.22966507177033493, 0.19856459330143542, 0.16267942583732056, 0.15311004784688995, 0.145933014354067, 0.1291866028708134, 0.12200956937799043, 0.11483253588516747, 0.09330143540669857, 0.08373205741626795, 0.06698564593301436, 0.045454545454545456, 0.0430622009569378, 0.03827751196172249, 0.03588516746411483, 0.03827751196172249, 0.03827751196172249, 0.03827751196172249, 0.03827751196172249, 0.03827751196172249, 0.03349282296650718, 0.03588516746411483, 0.03588516746411483, 0.045454545454545456, 0.06698564593301436, 0.06937799043062201, 0.07655502392344497, 0.08133971291866028, 0.0861244019138756, 0.10047846889952153, 0.1076555023923445, 0.16028708133971292, 0.23684210526315788, 0.2583732057416268, 0.2799043062200957, 0.291866028708134, 0.3133971291866029, 0.33253588516746413, 0.34210526315789475, 0.34688995215311, 0.35406698564593303, 0.3660287081339713, 0.3803827751196172, 0.40669856459330145, 0.430622009569378, 0.4569377990430622, 0.46172248803827753, 0.49760765550239233, 0.5191387559808612, 0.583732057416268, 0.6411483253588517, 0.7799043062200957], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/ANT.gap.json b/pfam_gap_rates/ANT.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c9acf62375cefe19ccd9b8e632c1e4471cf2d3dc
--- /dev/null
+++ b/pfam_gap_rates/ANT.gap.json
@@ -0,0 +1 @@
+{"family": "ANT", "n_seqs": 390, "length": 113, "gap_rates": [0.6410256410256411, 0.36153846153846153, 0.23076923076923078, 0.1717948717948718, 0.14358974358974358, 0.1358974358974359, 0.12307692307692308, 0.12051282051282051, 0.11794871794871795, 0.11282051282051282, 0.1076923076923077, 0.09487179487179487, 0.08974358974358974, 0.08205128205128205, 0.08205128205128205, 0.07692307692307693, 0.07435897435897436, 0.07692307692307693, 0.06923076923076923, 0.05384615384615385, 0.041025641025641026, 0.038461538461538464, 0.04871794871794872, 0.02564102564102564, 0.023076923076923078, 0.017948717948717947, 0.015384615384615385, 0.015384615384615385, 0.015384615384615385, 0.015384615384615385, 0.015384615384615385, 0.015384615384615385, 0.01282051282051282, 0.01282051282051282, 0.6615384615384615, 0.6897435897435897, 0.6948717948717948, 0.676923076923077, 0.6358974358974359, 0.015384615384615385, 0.015384615384615385, 0.015384615384615385, 0.015384615384615385, 0.015384615384615385, 0.01282051282051282, 0.01282051282051282, 0.01282051282051282, 0.01282051282051282, 0.01282051282051282, 0.01282051282051282, 0.01282051282051282, 0.010256410256410256, 0.010256410256410256, 0.010256410256410256, 0.01282051282051282, 0.01282051282051282, 0.01282051282051282, 0.12307692307692308, 0.5358974358974359, 0.5743589743589743, 0.1564102564102564, 0.14615384615384616, 0.06666666666666667, 0.028205128205128206, 0.023076923076923078, 0.02564102564102564, 0.02564102564102564, 0.02564102564102564, 0.02564102564102564, 0.02564102564102564, 0.09230769230769231, 0.03076923076923077, 0.09230769230769231, 0.05384615384615385, 0.03076923076923077, 0.03333333333333333, 0.03076923076923077, 0.03333333333333333, 0.035897435897435895, 0.035897435897435895, 0.035897435897435895, 0.03333333333333333, 0.30512820512820515, 0.34615384615384615, 0.30256410256410254, 0.2564102564102564, 0.24358974358974358, 0.05641025641025641, 0.9307692307692308, 0.1641025641025641, 0.08461538461538462, 0.05641025641025641, 0.05641025641025641, 0.04358974358974359, 0.04358974358974359, 0.041025641025641026, 0.041025641025641026, 0.041025641025641026, 0.041025641025641026, 0.041025641025641026, 0.041025641025641026, 0.041025641025641026, 0.041025641025641026, 0.041025641025641026, 0.041025641025641026, 0.041025641025641026, 0.041025641025641026, 0.041025641025641026, 0.05128205128205128, 0.06923076923076923, 0.13076923076923078, 0.3717948717948718, 0.7564102564102564], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/APP_Cu_bd.gap.json b/pfam_gap_rates/APP_Cu_bd.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..9d23148ea4fb055b865f57b0df91ebe5118a7c99
--- /dev/null
+++ b/pfam_gap_rates/APP_Cu_bd.gap.json
@@ -0,0 +1 @@
+{"family": "APP_Cu_bd", "n_seqs": 101, "length": 62, "gap_rates": [0.21782178217821782, 0.09900990099009901, 0.09900990099009901, 0.09900990099009901, 0.09900990099009901, 0.09900990099009901, 0.09900990099009901, 0.09900990099009901, 0.09900990099009901, 0.0891089108910891, 0.07920792079207921, 0.0891089108910891, 0.0891089108910891, 0.0891089108910891, 0.0891089108910891, 0.07920792079207921, 0.06930693069306931, 0.0594059405940594, 0.0594059405940594, 0.0594059405940594, 0.04950495049504951, 0.04950495049504951, 0.04950495049504951, 0.04950495049504951, 0.039603960396039604, 0.0297029702970297, 0.0297029702970297, 0.0297029702970297, 0.0297029702970297, 0.0297029702970297, 0.0297029702970297, 0.8217821782178217, 0.8811881188118812, 0.8811881188118812, 0.8613861386138614, 0.801980198019802, 0.009900990099009901, 0.019801980198019802, 0.019801980198019802, 0.019801980198019802, 0.019801980198019802, 0.019801980198019802, 0.019801980198019802, 0.009900990099009901, 0.009900990099009901, 0.009900990099009901, 0.009900990099009901, 0.009900990099009901, 0.009900990099009901, 0.0297029702970297, 0.009900990099009901, 0.009900990099009901, 0.009900990099009901, 0.009900990099009901, 0.009900990099009901, 0.009900990099009901, 0.009900990099009901, 0.009900990099009901, 0.009900990099009901, 0.009900990099009901, 0.009900990099009901, 0.0297029702970297], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/APP_N.gap.json b/pfam_gap_rates/APP_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..8198e047448f0ffc0a6aab2cd7df34da74c465a0
--- /dev/null
+++ b/pfam_gap_rates/APP_N.gap.json
@@ -0,0 +1 @@
+{"family": "APP_N", "n_seqs": 103, "length": 109, "gap_rates": [0.46601941747572817, 0.17475728155339806, 0.1650485436893204, 0.14563106796116504, 0.14563106796116504, 0.11650485436893204, 0.11650485436893204, 0.11650485436893204, 0.11650485436893204, 0.11650485436893204, 0.11650485436893204, 0.8543689320388349, 0.883495145631068, 0.8543689320388349, 0.8543689320388349, 0.11650485436893204, 0.11650485436893204, 0.11650485436893204, 0.11650485436893204, 0.11650485436893204, 0.46601941747572817, 0.11650485436893204, 0.07766990291262135, 0.07766990291262135, 0.07766990291262135, 0.07766990291262135, 0.07766990291262135, 0.07766990291262135, 0.07766990291262135, 0.07766990291262135, 0.07766990291262135, 0.08737864077669903, 0.1262135922330097, 0.9320388349514563, 0.07766990291262135, 0.07766990291262135, 0.07766990291262135, 0.07766990291262135, 0.07766990291262135, 0.0970873786407767, 0.0970873786407767, 0.10679611650485436, 0.07766990291262135, 0.07766990291262135, 0.06796116504854369, 0.06796116504854369, 0.06796116504854369, 0.06796116504854369, 0.04854368932038835, 0.02912621359223301, 0.009708737864077669, 0.019417475728155338, 0.02912621359223301, 0.02912621359223301, 0.038834951456310676, 0.04854368932038835, 0.04854368932038835, 0.04854368932038835, 0.038834951456310676, 0.038834951456310676, 0.06796116504854369, 0.04854368932038835, 0.04854368932038835, 0.04854368932038835, 0.05825242718446602, 0.04854368932038835, 0.04854368932038835, 0.04854368932038835, 0.04854368932038835, 0.04854368932038835, 0.04854368932038835, 0.04854368932038835, 0.05825242718446602, 0.05825242718446602, 0.05825242718446602, 0.912621359223301, 0.9223300970873787, 0.8349514563106796, 0.05825242718446602, 0.08737864077669903, 0.05825242718446602, 0.05825242718446602, 0.05825242718446602, 0.10679611650485436, 0.11650485436893204, 0.06796116504854369, 0.06796116504854369, 0.5048543689320388, 0.06796116504854369, 0.06796116504854369, 0.06796116504854369, 0.06796116504854369, 0.07766990291262135, 0.07766990291262135, 0.07766990291262135, 0.07766990291262135, 0.11650485436893204, 0.13592233009708737, 0.13592233009708737, 0.1553398058252427, 0.1553398058252427, 0.1553398058252427, 0.1650485436893204, 0.1650485436893204, 0.1650485436893204, 0.17475728155339806, 0.17475728155339806, 0.18446601941747573, 0.22330097087378642], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/ARF7EP_C.gap.json b/pfam_gap_rates/ARF7EP_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a47cf21ca65f57fedf0448c35b552386086c14a2
--- /dev/null
+++ b/pfam_gap_rates/ARF7EP_C.gap.json
@@ -0,0 +1 @@
+{"family": "ARF7EP_C", "n_seqs": 101, "length": 115, "gap_rates": [0.7227722772277227, 0.45544554455445546, 0.4158415841584158, 0.40594059405940597, 0.38613861386138615, 0.37623762376237624, 0.3564356435643564, 0.3465346534653465, 0.33663366336633666, 0.31683168316831684, 0.31683168316831684, 0.3069306930693069, 0.2871287128712871, 0.2871287128712871, 0.26732673267326734, 0.45544554455445546, 0.33663366336633666, 0.33663366336633666, 0.2871287128712871, 0.2871287128712871, 0.2871287128712871, 0.27722772277227725, 0.26732673267326734, 0.9108910891089109, 0.9207920792079208, 0.9108910891089109, 0.26732673267326734, 0.9108910891089109, 0.22772277227722773, 0.22772277227722773, 0.22772277227722773, 0.21782178217821782, 0.21782178217821782, 0.21782178217821782, 0.21782178217821782, 0.2079207920792079, 0.18811881188118812, 0.1782178217821782, 0.1782178217821782, 0.1782178217821782, 0.9108910891089109, 0.8217821782178217, 0.38613861386138615, 0.5445544554455446, 0.48514851485148514, 0.39603960396039606, 0.33663366336633666, 0.27722772277227725, 0.22772277227722773, 0.1782178217821782, 0.10891089108910891, 0.06930693069306931, 0.0594059405940594, 0.039603960396039604, 0.801980198019802, 0.0297029702970297, 0.0297029702970297, 0.019801980198019802, 0.019801980198019802, 0.019801980198019802, 0.019801980198019802, 0.019801980198019802, 0.019801980198019802, 0.019801980198019802, 0.019801980198019802, 0.0297029702970297, 0.009900990099009901, 0.009900990099009901, 0.0, 0.8118811881188119, 0.8217821782178217, 0.801980198019802, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.009900990099009901, 0.009900990099009901, 0.009900990099009901, 0.009900990099009901, 0.009900990099009901, 0.009900990099009901, 0.009900990099009901, 0.019801980198019802, 0.019801980198019802, 0.019801980198019802, 0.019801980198019802, 0.019801980198019802, 0.019801980198019802, 0.019801980198019802, 0.019801980198019802, 0.0297029702970297, 0.0297029702970297, 0.0297029702970297, 0.019801980198019802, 0.039603960396039604, 0.04950495049504951, 0.04950495049504951, 0.06930693069306931, 0.09900990099009901, 0.10891089108910891, 0.1782178217821782, 0.25742574257425743, 0.36633663366336633, 0.8514851485148515], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/ARGLU.gap.json b/pfam_gap_rates/ARGLU.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..5ff14c54c19fed758e5eaa3031142523014c4fc7
--- /dev/null
+++ b/pfam_gap_rates/ARGLU.gap.json
@@ -0,0 +1 @@
+{"family": "ARGLU", "n_seqs": 161, "length": 159, "gap_rates": [0.37888198757763975, 0.3167701863354037, 0.2732919254658385, 0.2670807453416149, 0.2546583850931677, 0.2546583850931677, 0.2360248447204969, 0.19875776397515527, 0.19254658385093168, 0.18633540372670807, 0.18633540372670807, 0.18633540372670807, 0.18633540372670807, 0.18012422360248448, 0.18012422360248448, 0.18012422360248448, 0.16149068322981366, 0.13664596273291926, 0.14285714285714285, 0.11180124223602485, 0.11180124223602485, 0.11180124223602485, 0.09937888198757763, 0.09937888198757763, 0.09937888198757763, 0.09937888198757763, 0.09937888198757763, 0.09937888198757763, 0.09316770186335403, 0.4968944099378882, 0.4968944099378882, 0.13664596273291926, 0.13043478260869565, 0.08695652173913043, 0.08695652173913043, 0.08695652173913043, 0.08695652173913043, 0.08695652173913043, 0.08695652173913043, 0.08695652173913043, 0.08695652173913043, 0.08074534161490683, 0.08074534161490683, 0.08074534161490683, 0.08074534161490683, 0.08074534161490683, 0.08074534161490683, 0.08074534161490683, 0.08074534161490683, 0.06832298136645963, 0.06832298136645963, 0.06832298136645963, 0.06832298136645963, 0.06832298136645963, 0.06832298136645963, 0.06832298136645963, 0.06832298136645963, 0.06832298136645963, 0.07453416149068323, 0.07453416149068323, 0.07453416149068323, 0.07453416149068323, 0.07453416149068323, 0.07453416149068323, 0.07453416149068323, 0.07453416149068323, 0.07453416149068323, 0.07453416149068323, 0.08074534161490683, 0.07453416149068323, 0.07453416149068323, 0.07453416149068323, 0.07453416149068323, 0.08695652173913043, 0.08695652173913043, 0.08695652173913043, 0.09316770186335403, 0.09937888198757763, 0.09937888198757763, 0.09937888198757763, 0.09937888198757763, 0.09316770186335403, 0.09316770186335403, 0.09316770186335403, 0.09937888198757763, 0.08695652173913043, 0.08695652173913043, 0.08695652173913043, 0.08695652173913043, 0.08695652173913043, 0.08074534161490683, 0.08074534161490683, 0.07453416149068323, 0.07453416149068323, 0.07453416149068323, 0.07453416149068323, 0.06832298136645963, 0.062111801242236024, 0.055900621118012424, 0.049689440993788817, 0.049689440993788817, 0.07453416149068323, 0.6335403726708074, 0.639751552795031, 0.639751552795031, 0.639751552795031, 0.639751552795031, 0.639751552795031, 0.6335403726708074, 0.09937888198757763, 0.09937888198757763, 0.11180124223602485, 0.11180124223602485, 0.11801242236024845, 0.11801242236024845, 0.11180124223602485, 0.11180124223602485, 0.11180124223602485, 0.11801242236024845, 0.11180124223602485, 0.11180124223602485, 0.11180124223602485, 0.11180124223602485, 0.11180124223602485, 0.11801242236024845, 0.11801242236024845, 0.11801242236024845, 0.11801242236024845, 0.11801242236024845, 0.12422360248447205, 0.13043478260869565, 0.13664596273291926, 0.13664596273291926, 0.13664596273291926, 0.13664596273291926, 0.13664596273291926, 0.14906832298136646, 0.16149068322981366, 0.15527950310559005, 0.15527950310559005, 0.15527950310559005, 0.16770186335403728, 0.19254658385093168, 0.19254658385093168, 0.19254658385093168, 0.19875776397515527, 0.19875776397515527, 0.19254658385093168, 0.8695652173913043, 0.20496894409937888, 0.21739130434782608, 0.20496894409937888, 0.2111801242236025, 0.21739130434782608, 0.2360248447204969, 0.2422360248447205, 0.2670807453416149, 0.2732919254658385, 0.40372670807453415], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/ASD2.gap.json b/pfam_gap_rates/ASD2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..5def3cbd606e097078ce7af1ac8c688fb04b1a7d
--- /dev/null
+++ b/pfam_gap_rates/ASD2.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/ATP-synt_B.gap.json b/pfam_gap_rates/ATP-synt_B.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f163f9e74017d040a0e7e879daa4e2d686441a71
--- /dev/null
+++ b/pfam_gap_rates/ATP-synt_B.gap.json
@@ -0,0 +1 @@
+{"family": "ATP-synt_B", "n_seqs": 2260, "length": 132, "gap_rates": [0.7163716814159292, 0.28938053097345134, 0.16769911504424778, 0.09513274336283185, 0.061504424778761065, 0.05, 0.03805309734513274, 0.032300884955752215, 0.030530973451327433, 0.03008849557522124, 0.027876106194690265, 0.026991150442477876, 0.02743362831858407, 0.026991150442477876, 0.02654867256637168, 0.02566371681415929, 0.022123893805309734, 0.01991150442477876, 0.01991150442477876, 0.01991150442477876, 0.01991150442477876, 0.019469026548672566, 0.01902654867256637, 0.017256637168141593, 0.015486725663716814, 0.01327433628318584, 0.01327433628318584, 0.011061946902654867, 0.011061946902654867, 0.010619469026548672, 0.010619469026548672, 0.010619469026548672, 0.009734513274336283, 0.008407079646017699, 0.008407079646017699, 0.008849557522123894, 0.008849557522123894, 0.008849557522123894, 0.008849557522123894, 0.008407079646017699, 0.007964601769911504, 0.007964601769911504, 0.00752212389380531, 0.00752212389380531, 0.008407079646017699, 0.007964601769911504, 0.007079646017699115, 0.006194690265486726, 0.005752212389380531, 0.006194690265486726, 0.005309734513274336, 0.0035398230088495575, 0.0035398230088495575, 0.002654867256637168, 0.002654867256637168, 0.003097345132743363, 0.0035398230088495575, 0.0035398230088495575, 0.0035398230088495575, 0.0035398230088495575, 0.0035398230088495575, 0.0035398230088495575, 0.003982300884955752, 0.003982300884955752, 0.004424778761061947, 0.004424778761061947, 0.0035398230088495575, 0.003097345132743363, 0.003097345132743363, 0.0035398230088495575, 0.003097345132743363, 0.003097345132743363, 0.002654867256637168, 0.002654867256637168, 0.002654867256637168, 0.002654867256637168, 0.003097345132743363, 0.003097345132743363, 0.004424778761061947, 0.0048672566371681415, 0.0048672566371681415, 0.005309734513274336, 0.0048672566371681415, 0.0048672566371681415, 0.005752212389380531, 0.006194690265486726, 0.007079646017699115, 0.007079646017699115, 0.007079646017699115, 0.007964601769911504, 0.007079646017699115, 0.008407079646017699, 0.007964601769911504, 0.007964601769911504, 0.008407079646017699, 0.007964601769911504, 0.009292035398230088, 0.010619469026548672, 0.011946902654867256, 0.012389380530973451, 0.012389380530973451, 0.011946902654867256, 0.011504424778761062, 0.011946902654867256, 0.012389380530973451, 0.012831858407079646, 0.012831858407079646, 0.01415929203539823, 0.014601769911504425, 0.014601769911504425, 0.01592920353982301, 0.016814159292035398, 0.018141592920353982, 0.02079646017699115, 0.023451327433628318, 0.030973451327433628, 0.034070796460176994, 0.036283185840707964, 0.0420353982300885, 0.048230088495575224, 0.050442477876106194, 0.05221238938053097, 0.05619469026548673, 0.0584070796460177, 0.06017699115044248, 0.06504424778761062, 0.06902654867256637, 0.07831858407079646, 0.09070796460176991, 0.11946902654867257, 0.19646017699115045, 0.8376106194690266], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/ATP-synt_ab_C.gap.json b/pfam_gap_rates/ATP-synt_ab_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..2d3726a300dcd644c0c64e42f6159de087fbbccc
--- /dev/null
+++ b/pfam_gap_rates/ATP-synt_ab_C.gap.json
@@ -0,0 +1 @@
+{"family": "ATP-synt_ab_C", "n_seqs": 2307, "length": 126, "gap_rates": [0.04247941048981361, 0.03424360641525791, 0.0329432162982228, 0.031209362808842653, 0.026441265713047248, 0.02600780234070221, 0.024273948851322065, 0.021673168617251843, 0.021239705244906804, 0.02080624187256177, 0.01907238838318162, 0.018638925010836586, 0.018205461638491547, 0.018205461638491547, 0.017771998266146512, 0.016905071521456438, 0.016905071521456438, 0.016905071521456438, 0.0164716081491114, 0.016038144776766364, 0.014737754659731253, 0.014737754659731253, 0.014737754659731253, 0.014304291287386216, 0.013870827915041179, 0.014304291287386216, 0.014737754659731253, 0.014737754659731253, 0.014304291287386216, 0.014304291287386216, 0.01517121803207629, 0.014737754659731253, 0.01517121803207629, 0.013870827915041179, 0.018205461638491547, 0.018205461638491547, 0.01907238838318162, 0.013870827915041179, 0.012570437798006068, 0.012570437798006068, 0.012570437798006068, 0.012570437798006068, 0.013003901170351105, 0.012136974425661032, 0.011703511053315995, 0.011270047680970958, 0.010403120936280884, 0.010403120936280884, 0.010403120936280884, 0.010403120936280884, 0.010403120936280884, 0.010836584308625921, 0.011270047680970958, 0.011703511053315995, 0.018205461638491547, 0.017338534893801473, 0.012136974425661032, 0.012136974425661032, 0.012136974425661032, 0.011270047680970958, 0.011270047680970958, 0.011703511053315995, 0.012136974425661032, 0.012136974425661032, 0.012136974425661032, 0.012570437798006068, 0.013003901170351105, 0.013437364542696142, 0.014737754659731253, 0.014737754659731253, 0.01517121803207629, 0.01517121803207629, 0.01517121803207629, 0.016038144776766364, 0.015604681404421327, 0.01517121803207629, 0.01517121803207629, 0.015604681404421327, 0.015604681404421327, 0.016038144776766364, 0.016038144776766364, 0.016038144776766364, 0.016038144776766364, 0.016038144776766364, 0.018638925010836586, 0.018205461638491547, 0.017771998266146512, 0.017771998266146512, 0.018205461638491547, 0.018638925010836586, 0.024273948851322065, 0.026441265713047248, 0.027308192457737322, 0.030775899436497615, 0.03034243606415258, 0.035977459904638055, 0.03901170351105332, 0.10403120936280884, 0.05114867793671435, 0.04638058084091894, 0.043779800606848725, 0.044213263979193757, 0.045513654096228866, 0.04768097095795405, 0.04984828781967924, 0.05028175119202427, 0.05158214130905939, 0.05244906805374946, 0.13003901170351106, 0.0611183355006502, 0.05938448201127005, 0.0611183355006502, 0.06285218899003034, 0.06631989596879063, 0.12310359774599046, 0.1352405721716515, 0.08539228435197226, 0.0810576506285219, 0.08625921109666233, 0.0905938448201127, 0.09276116168183789, 0.09839618552232336, 0.11400086692674469, 0.14304291287386217, 0.2093628088426528, 0.42436064152579106], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/ATPase_gene1.gap.json b/pfam_gap_rates/ATPase_gene1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..78f5b4bfc264729a4002fca343f47ca41938c1f3
--- /dev/null
+++ b/pfam_gap_rates/ATPase_gene1.gap.json
@@ -0,0 +1 @@
+{"family": "ATPase_gene1", "n_seqs": 939, "length": 55, "gap_rates": [0.6858359957401491, 0.42705005324813633, 0.28434504792332266, 0.17784877529286475, 0.12673056443024494, 0.07987220447284345, 0.06389776357827476, 0.04898828541001065, 0.039403620873269436, 0.03514376996805112, 0.012779552715654952, 0.007454739084132056, 0.005324813631522897, 0.003194888178913738, 0.002129925452609159, 0.002129925452609159, 0.0010649627263045794, 0.004259850905218318, 0.004259850905218318, 0.004259850905218318, 0.003194888178913738, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0010649627263045794, 0.0010649627263045794, 0.0, 0.03301384451544196, 0.8977635782747604, 0.03727369542066028, 0.07454739084132056, 0.007454739084132056, 0.0010649627263045794, 0.0, 0.0, 0.0010649627263045794, 0.0010649627263045794, 0.0, 0.0010649627263045794, 0.0010649627263045794, 0.002129925452609159, 0.002129925452609159, 0.007454739084132056, 0.014909478168264111, 0.019169329073482427, 0.023429179978700747, 0.0308839190628328, 0.039403620873269436, 0.054313099041533544, 0.09691160809371673, 0.2939297124600639, 0.8146964856230032], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/AUX_IAA.gap.json b/pfam_gap_rates/AUX_IAA.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..691f116628ffdb77cc3a63e86ca47b74881fd73f
--- /dev/null
+++ b/pfam_gap_rates/AUX_IAA.gap.json
@@ -0,0 +1 @@
+{"family": "AUX_IAA", "n_seqs": 1250, "length": 310, "gap_rates": [0.8208, 0.804, 0.8016, 0.8008, 0.8, 0.7992, 0.7992, 0.7992, 0.8032, 0.8408, 0.8416, 0.8408, 0.8408, 0.84, 0.8408, 0.8416, 0.844, 0.8488, 0.8504, 0.8288, 0.8632, 0.8584, 0.848, 0.8448, 0.8496, 0.8456, 0.8776, 0.8696, 0.8568, 0.8464, 0.8464, 0.848, 0.8416, 0.8312, 0.8296, 0.8272, 0.8296, 0.8352, 0.8392, 0.8504, 0.8592, 0.8744, 0.9448, 0.8856, 0.8976, 0.896, 0.8744, 0.8592, 0.7848, 0.752, 0.7416, 0.7272, 0.7224, 0.7168, 0.716, 0.712, 0.712, 0.7104, 0.7112, 0.7112, 0.8304, 0.8344, 0.8408, 0.8536, 0.8608, 0.8672, 0.8848, 0.892, 0.9032, 0.9104, 0.916, 0.92, 0.9224, 0.9248, 0.9264, 0.9288, 0.9328, 0.9376, 0.944, 0.9488, 0.9472, 0.94, 0.9344, 0.9304, 0.928, 0.9248, 0.924, 0.92, 0.9184, 0.912, 0.908, 0.8976, 0.8888, 0.872, 0.8624, 0.8552, 0.8496, 0.8392, 0.8304, 0.828, 0.736, 0.824, 0.7872, 0.76, 0.7528, 0.7328, 0.724, 0.7216, 0.7184, 0.7064, 0.708, 0.948, 0.7056, 0.708, 0.7016, 0.708, 0.6192, 0.872, 0.9056, 0.9456, 0.9256, 0.8896, 0.8616, 0.5976, 0.592, 0.5832, 0.5816, 0.5784, 0.5744, 0.5696, 0.5664, 0.5592, 0.5656, 0.5656, 0.5408, 0.5344, 0.5328, 0.5328, 0.5328, 0.5312, 0.5288, 0.528, 0.5264, 0.5256, 0.5248, 0.5248, 0.5248, 0.5256, 0.5248, 0.5232, 0.52, 0.5224, 0.528, 0.5288, 0.5312, 0.5328, 0.5576, 0.5472, 0.5424, 0.6448, 0.6384, 0.588, 0.8736, 0.8848, 0.9008, 0.9088, 0.928, 0.9448, 0.948, 0.9344, 0.9232, 0.9048, 0.8928, 0.88, 0.868, 0.6472, 0.6808, 0.6832, 0.6472, 0.6272, 0.5912, 0.5792, 0.5888, 0.7152, 0.608, 0.8544, 0.8936, 0.912, 0.94, 0.9264, 0.9016, 0.868, 0.848, 0.4552, 0.3176, 0.2304, 0.2056, 0.1872, 0.1848, 0.1832, 0.184, 0.1832, 0.1832, 0.168, 0.1688, 0.1672, 0.2032, 0.2752, 0.1688, 0.1632, 0.1624, 0.1632, 0.1632, 0.1632, 0.164, 0.1648, 0.1648, 0.1648, 0.1656, 0.1656, 0.1664, 0.1664, 0.168, 0.1704, 0.168, 0.1672, 0.1672, 0.1672, 0.1672, 0.168, 0.1688, 0.1688, 0.204, 0.364, 0.424, 0.3128, 0.2992, 0.3952, 0.4088, 0.6384, 0.656, 0.6768, 0.6248, 0.6008, 0.6072, 0.8184, 0.7824, 0.7304, 0.6808, 0.6392, 0.5264, 0.516, 0.4568, 0.4904, 0.5552, 0.5976, 0.948, 0.5632, 0.5, 0.4736, 0.436, 0.352, 0.2728, 0.2032, 0.8528, 0.1608, 0.1464, 0.1448, 0.1432, 0.1432, 0.1424, 0.1424, 0.1424, 0.1416, 0.1416, 0.1416, 0.1416, 0.1432, 0.144, 0.144, 0.144, 0.144, 0.144, 0.1448, 0.1448, 0.1448, 0.1464, 0.1744, 0.1752, 0.1768, 0.1776, 0.1784, 0.1784, 0.1784, 0.1784, 0.1792, 0.18, 0.1808, 0.1896, 0.2304, 0.2712, 0.3032, 0.3184, 0.3696, 0.4936, 0.5776, 0.6152, 0.668, 0.7712, 0.7952], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Abhydrolase_4.gap.json b/pfam_gap_rates/Abhydrolase_4.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..1ae6a9f760ddfb075d459672aadd497402dd3678
--- /dev/null
+++ b/pfam_gap_rates/Abhydrolase_4.gap.json
@@ -0,0 +1 @@
+{"family": "Abhydrolase_4", "n_seqs": 896, "length": 118, "gap_rates": [0.9285714285714286, 0.7924107142857143, 0.7220982142857143, 0.6082589285714286, 0.5703125, 0.5479910714285714, 0.5267857142857143, 0.4921875, 0.45535714285714285, 0.41964285714285715, 0.37276785714285715, 0.33705357142857145, 0.38950892857142855, 0.35825892857142855, 0.9118303571428571, 0.2533482142857143, 0.24330357142857142, 0.21540178571428573, 0.20535714285714285, 0.9352678571428571, 0.9397321428571429, 0.9375, 0.9207589285714286, 0.20089285714285715, 0.203125, 0.19977678571428573, 0.19419642857142858, 0.18861607142857142, 0.18861607142857142, 0.18973214285714285, 0.1875, 0.18303571428571427, 0.17410714285714285, 0.1875, 0.15736607142857142, 0.9464285714285714, 0.140625, 0.8895089285714286, 0.25892857142857145, 0.19642857142857142, 0.9140625, 0.9441964285714286, 0.8191964285714286, 0.10714285714285714, 0.9107142857142857, 0.03794642857142857, 0.03571428571428571, 0.03571428571428571, 0.033482142857142856, 0.030133928571428572, 0.027901785714285716, 0.024553571428571428, 0.0234375, 0.021205357142857144, 0.020089285714285716, 0.017857142857142856, 0.021205357142857144, 0.018973214285714284, 0.017857142857142856, 0.016741071428571428, 0.014508928571428572, 0.016741071428571428, 0.011160714285714286, 0.013392857142857142, 0.008928571428571428, 0.008928571428571428, 0.008928571428571428, 0.008928571428571428, 0.008928571428571428, 0.008928571428571428, 0.008928571428571428, 0.008928571428571428, 0.06138392857142857, 0.9397321428571429, 0.7700892857142857, 0.018973214285714284, 0.011160714285714286, 0.012276785714285714, 0.010044642857142858, 0.010044642857142858, 0.010044642857142858, 0.008928571428571428, 0.012276785714285714, 0.013392857142857142, 0.9017857142857143, 0.013392857142857142, 0.017857142857142856, 0.0234375, 0.03236607142857143, 0.056919642857142856, 0.2265625, 0.7890625, 0.14397321428571427, 0.10044642857142858, 0.08482142857142858, 0.08705357142857142, 0.08816964285714286, 0.08705357142857142, 0.09709821428571429, 0.08928571428571429, 0.08928571428571429, 0.09375, 0.09933035714285714, 0.09821428571428571, 0.10379464285714286, 0.10602678571428571, 0.12834821428571427, 0.1484375, 0.15513392857142858, 0.1640625, 0.17857142857142858, 0.19977678571428573, 0.21986607142857142, 0.27566964285714285, 0.29575892857142855, 0.32142857142857145, 0.3515625, 0.3794642857142857], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Abhydrolase_6.gap.json b/pfam_gap_rates/Abhydrolase_6.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e37f900b8de085e45c7e40f907a47cab78309a0a
--- /dev/null
+++ b/pfam_gap_rates/Abhydrolase_6.gap.json
@@ -0,0 +1 @@
+{"family": "Abhydrolase_6", "n_seqs": 5000, "length": 437, "gap_rates": [0.2934, 0.1776, 0.1488, 0.1358, 0.1254, 0.1204, 0.2062, 0.1734, 0.274, 0.7576, 0.933, 0.4664, 0.2162, 0.195, 0.852, 0.475, 0.13, 0.854, 0.9444, 0.9172, 0.7274, 0.2094, 0.9174, 0.7454, 0.5084, 0.4578, 0.0954, 0.0916, 0.943, 0.8646, 0.1668, 0.155, 0.1292, 0.1282, 0.0818, 0.0852, 0.0718, 0.8732, 0.927, 0.7636, 0.0904, 0.2426, 0.242, 0.0538, 0.0502, 0.0386, 0.0382, 0.0378, 0.0506, 0.0536, 0.0518, 0.9084, 0.0816, 0.8884, 0.9204, 0.9416, 0.9478, 0.9302, 0.9034, 0.8584, 0.2506, 0.1382, 0.8962, 0.9446, 0.9242, 0.862, 0.1102, 0.0968, 0.0872, 0.0718, 0.869, 0.9146, 0.945, 0.9324, 0.8904, 0.845, 0.0346, 0.0378, 0.0406, 0.1168, 0.115, 0.704, 0.8794, 0.9396, 0.9206, 0.7744, 0.4948, 0.1434, 0.931, 0.036, 0.0318, 0.0222, 0.8982, 0.9464, 0.9272, 0.6424, 0.0204, 0.0196, 0.018, 0.0162, 0.0172, 0.0196, 0.0176, 0.8418, 0.8936, 0.9376, 0.9262, 0.8594, 0.816, 0.287, 0.0568, 0.7438, 0.8734, 0.9482, 0.9182, 0.825, 0.6566, 0.0148, 0.0156, 0.007, 0.9436, 0.0096, 0.0088, 0.0056, 0.0054, 0.0054, 0.0072, 0.0092, 0.0072, 0.0078, 0.0066, 0.0064, 0.0068, 0.0068, 0.0068, 0.909, 0.358, 0.3604, 0.3626, 0.0128, 0.0146, 0.8386, 0.9308, 0.8852, 0.7766, 0.1982, 0.524, 0.7202, 0.9198, 0.86, 0.622, 0.2698, 0.028, 0.0884, 0.0568, 0.021, 0.8232, 0.2654, 0.0098, 0.0098, 0.009, 0.0098, 0.009, 0.8214, 0.8472, 0.8716, 0.9014, 0.9194, 0.9358, 0.944, 0.9278, 0.9104, 0.887, 0.857, 0.8326, 0.8114, 0.5492, 0.6044, 0.793, 0.8464, 0.9064, 0.9432, 0.9274, 0.8754, 0.82, 0.7614, 0.5012, 0.1834, 0.1694, 0.1362, 0.1282, 0.1226, 0.0558, 0.6044, 0.7308, 0.819, 0.8852, 0.9276, 0.9408, 0.9074, 0.8566, 0.7744, 0.6756, 0.5452, 0.0508, 0.0716, 0.0642, 0.0596, 0.0542, 0.0484, 0.047, 0.047, 0.0454, 0.0506, 0.0506, 0.0514, 0.054, 0.8474, 0.8934, 0.9326, 0.946, 0.9166, 0.8696, 0.8204, 0.094, 0.134, 0.1384, 0.107, 0.6594, 0.7944, 0.889, 0.9452, 0.9178, 0.85, 0.743, 0.5806, 0.1136, 0.0768, 0.0746, 0.0698, 0.6476, 0.766, 0.857, 0.9202, 0.9454, 0.8952, 0.8132, 0.707, 0.5794, 0.24, 0.3312, 0.8772, 0.9402, 0.9142, 0.825, 0.2398, 0.2394, 0.1814, 0.8436, 0.874, 0.9062, 0.9288, 0.949, 0.9408, 0.9172, 0.891, 0.8538, 0.833, 0.231, 0.8994, 0.0836, 0.084, 0.0866, 0.0874, 0.3112, 0.3208, 0.2956, 0.6392, 0.72, 0.7868, 0.8394, 0.8752, 0.9076, 0.9302, 0.945, 0.9196, 0.8902, 0.8566, 0.8162, 0.7552, 0.682, 0.5796, 0.359, 0.3812, 0.1074, 0.1024, 0.0936, 0.0888, 0.0868, 0.0872, 0.0892, 0.0992, 0.0996, 0.0986, 0.0798, 0.7994, 0.8146, 0.8308, 0.8486, 0.8752, 0.8972, 0.9148, 0.9292, 0.941, 0.9466, 0.9336, 0.9236, 0.9044, 0.8882, 0.8616, 0.8418, 0.821, 0.811, 0.7898, 0.087, 0.1206, 0.1246, 0.1182, 0.8982, 0.925, 0.9486, 0.9374, 0.9136, 0.883, 0.1216, 0.1388, 0.1336, 0.8238, 0.9122, 0.9456, 0.8724, 0.7282, 0.2088, 0.2196, 0.1858, 0.9396, 0.912, 0.1654, 0.1618, 0.102, 0.1026, 0.1028, 0.103, 0.1046, 0.1062, 0.1072, 0.1106, 0.0998, 0.8078, 0.851, 0.9008, 0.9208, 0.939, 0.9482, 0.9322, 0.9142, 0.881, 0.827, 0.7484, 0.235, 0.1184, 0.2002, 0.9434, 0.6434, 0.1282, 0.94, 0.7808, 0.107, 0.1086, 0.1062, 0.1034, 0.7856, 0.8534, 0.9192, 0.9436, 0.8898, 0.826, 0.7116, 0.1106, 0.1456, 0.1438, 0.9488, 0.2872, 0.2826, 0.1558, 0.1584, 0.1366, 0.1384, 0.139, 0.1362, 0.4392, 0.8414, 0.8894, 0.6318, 0.3544, 0.1382, 0.154, 0.1524, 0.1536, 0.1626, 0.7984, 0.9102, 0.9442, 0.923, 0.8748, 0.155, 0.1546, 0.1442, 0.147, 0.159, 0.137, 0.1396, 0.1436, 0.9246, 0.1522, 0.1686, 0.1812, 0.1982, 0.3074, 0.2306, 0.2412, 0.2706, 0.297, 0.3316, 0.4314, 0.5868, 0.927], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Abhydrolase_9.gap.json b/pfam_gap_rates/Abhydrolase_9.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ee1efe27f2175983a0d8b411216afebe0470fd1b
--- /dev/null
+++ b/pfam_gap_rates/Abhydrolase_9.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/AbiH.gap.json b/pfam_gap_rates/AbiH.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..410d36098f9339b1c272eacbb3f519758d0505d3
--- /dev/null
+++ b/pfam_gap_rates/AbiH.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Acetyltransf_16.gap.json b/pfam_gap_rates/Acetyltransf_16.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..7490c807df5d4b02da6ef6bd5da1533ae250ab7f
--- /dev/null
+++ b/pfam_gap_rates/Acetyltransf_16.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Acetyltransf_4.gap.json b/pfam_gap_rates/Acetyltransf_4.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..07b7d7c7e167ec54e339dd237b6d0a87a6d847ae
--- /dev/null
+++ b/pfam_gap_rates/Acetyltransf_4.gap.json
@@ -0,0 +1 @@
+{"family": "Acetyltransf_4", "n_seqs": 1205, "length": 165, "gap_rates": [0.27551867219917014, 0.18672199170124482, 0.16680497925311202, 0.14107883817427386, 0.13195020746887967, 0.12614107883817427, 0.11618257261410789, 0.11037344398340249, 0.0946058091286307, 0.08547717842323652, 0.08049792531120332, 0.07800829875518672, 0.07385892116182573, 0.07053941908713693, 0.06887966804979254, 0.06887966804979254, 0.06887966804979254, 0.07800829875518672, 0.0995850622406639, 0.07634854771784233, 0.07302904564315353, 0.08381742738589211, 0.07883817427385892, 0.9493775933609958, 0.07468879668049792, 0.06639004149377593, 0.06390041493775933, 0.06224066390041494, 0.06307053941908713, 0.07800829875518672, 0.1045643153526971, 0.07883817427385892, 0.06556016597510374, 0.056431535269709544, 0.05394190871369295, 0.053112033195020746, 0.05062240663900415, 0.053112033195020746, 0.05062240663900415, 0.946058091286307, 0.05228215767634855, 0.04979253112033195, 0.04564315352697095, 0.04564315352697095, 0.044813278008298756, 0.08215767634854772, 0.8871369294605809, 0.7518672199170124, 0.42406639004149377, 0.11535269709543569, 0.0979253112033195, 0.07883817427385892, 0.06307053941908713, 0.054771784232365145, 0.04896265560165975, 0.03900414937759336, 0.034854771784232366, 0.034854771784232366, 0.034854771784232366, 0.8564315352697095, 0.25311203319502074, 0.027385892116182572, 0.026556016597510373, 0.024896265560165973, 0.024066390041493777, 0.024066390041493777, 0.023236514522821577, 0.023236514522821577, 0.024066390041493777, 0.024066390041493777, 0.024066390041493777, 0.024066390041493777, 0.9410788381742738, 0.03319502074688797, 0.02987551867219917, 0.028215767634854772, 0.025726141078838173, 0.2016597510373444, 0.13941908713692946, 0.12033195020746888, 0.03402489626556016, 0.02987551867219917, 0.025726141078838173, 0.024066390041493777, 0.024066390041493777, 0.023236514522821577, 0.022406639004149378, 0.027385892116182572, 0.024896265560165973, 0.024066390041493777, 0.022406639004149378, 0.022406639004149378, 0.022406639004149378, 0.03402489626556016, 0.023236514522821577, 0.028215767634854772, 0.025726141078838173, 0.02074688796680498, 0.01991701244813278, 0.01991701244813278, 0.024896265560165973, 0.021576763485477178, 0.018257261410788383, 0.014937759336099586, 0.014937759336099586, 0.014107883817427386, 0.013278008298755186, 0.013278008298755186, 0.014107883817427386, 0.010788381742738589, 0.010788381742738589, 0.010788381742738589, 0.8846473029045643, 0.011618257261410789, 0.012448132780082987, 0.011618257261410789, 0.009128630705394191, 0.010788381742738589, 0.011618257261410789, 0.010788381742738589, 0.010788381742738589, 0.010788381742738589, 0.011618257261410789, 0.010788381742738589, 0.010788381742738589, 0.9253112033195021, 0.011618257261410789, 0.014937759336099586, 0.012448132780082987, 0.9410788381742738, 0.8871369294605809, 0.013278008298755186, 0.012448132780082987, 0.011618257261410789, 0.012448132780082987, 0.012448132780082987, 0.012448132780082987, 0.012448132780082987, 0.012448132780082987, 0.013278008298755186, 0.013278008298755186, 0.013278008298755186, 0.014937759336099586, 0.015767634854771784, 0.016597510373443983, 0.01991701244813278, 0.025726141078838173, 0.03402489626556016, 0.04066390041493776, 0.04979253112033195, 0.06224066390041494, 0.06887966804979254, 0.07800829875518672, 0.08464730290456432, 0.0937759336099585, 0.0995850622406639, 0.1078838174273859, 0.11369294605809128, 0.12199170124481327, 0.12946058091286308, 0.14937759336099585, 0.187551867219917, 0.42323651452282157, 0.5892116182572614, 0.7742738589211619], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Acyl-CoA_dh_2.gap.json b/pfam_gap_rates/Acyl-CoA_dh_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..425d319f33eb4f36ce5bb0c4f2c706cea464d99c
--- /dev/null
+++ b/pfam_gap_rates/Acyl-CoA_dh_2.gap.json
@@ -0,0 +1 @@
+{"family": "Acyl-CoA_dh_2", "n_seqs": 1043, "length": 149, "gap_rates": [0.8935762224352828, 0.5023969319271333, 0.2962607861936721, 0.18887823585810162, 0.10930009587727708, 0.08053691275167785, 0.062320230105465, 0.05081495685522531, 0.040268456375838924, 0.03547459252157239, 0.03547459252157239, 0.03451581975071908, 0.03451581975071908, 0.03451581975071908, 0.03451581975071908, 0.03355704697986577, 0.03355704697986577, 0.03355704697986577, 0.032598274209012464, 0.032598274209012464, 0.032598274209012464, 0.031639501438159155, 0.030680728667305847, 0.030680728667305847, 0.030680728667305847, 0.030680728667305847, 0.032598274209012464, 0.6586768935762224, 0.9146692233940557, 0.9300095877277086, 0.6788111217641419, 0.5004793863854267, 0.16682646212847554, 0.10067114093959731, 0.08053691275167785, 0.07861936720997123, 0.07574304889741132, 0.0728667305848514, 0.07190795781399809, 0.04985618408437201, 0.04793863854266539, 0.03355704697986577, 0.031639501438159155, 0.028763183125599234, 0.026845637583892617, 0.028763183125599234, 0.026845637583892617, 0.027804410354745925, 0.023010546500479387, 0.02109300095877277, 0.020134228187919462, 0.01821668264621285, 0.01725790987535954, 0.01725790987535954, 0.016299137104506232, 0.016299137104506232, 0.014381591562799617, 0.013422818791946308, 0.013422818791946308, 0.013422818791946308, 0.013422818791946308, 0.013422818791946308, 0.013422818791946308, 0.013422818791946308, 0.013422818791946308, 0.012464046021093002, 0.011505273250239693, 0.011505273250239693, 0.012464046021093002, 0.22818791946308725, 0.1725790987535954, 0.20421860019175456, 0.2080536912751678, 0.8916586768935763, 0.9175455417066155, 0.9415148609779482, 0.9386385426653883, 0.8983700862895494, 0.8686481303930969, 0.0738255033557047, 0.039309683604985615, 0.031639501438159155, 0.024928092042186004, 0.030680728667305847, 0.032598274209012464, 0.1236816874400767, 0.9175455417066155, 0.14669223394055608, 0.12655800575263662, 0.0977948226270374, 0.06999041227229147, 0.02588686481303931, 0.02205177372962608, 0.02205177372962608, 0.026845637583892617, 0.023010546500479387, 0.020134228187919462, 0.014381591562799617, 0.7488015340364333, 0.7823585810162992, 0.7813998082454459, 0.7459252157238735, 0.012464046021093002, 0.011505273250239693, 0.012464046021093002, 0.00862895493767977, 0.013422818791946308, 0.010546500479386385, 0.011505273250239693, 0.011505273250239693, 0.00862895493767977, 0.007670182166826462, 0.007670182166826462, 0.007670182166826462, 0.00862895493767977, 0.00862895493767977, 0.00862895493767977, 0.006711409395973154, 0.007670182166826462, 0.006711409395973154, 0.006711409395973154, 0.006711409395973154, 0.006711409395973154, 0.006711409395973154, 0.007670182166826462, 0.007670182166826462, 0.00862895493767977, 0.014381591562799617, 0.012464046021093002, 0.012464046021093002, 0.012464046021093002, 0.012464046021093002, 0.014381591562799617, 0.014381591562799617, 0.014381591562799617, 0.014381591562799617, 0.014381591562799617, 0.014381591562799617, 0.016299137104506232, 0.01821668264621285, 0.024928092042186004, 0.059443911792905084, 0.14189837008628955, 0.15627996164908917, 0.16490891658676893, 0.3883029721955896, 0.6021093000958773, 0.6395014381591563, 0.7459252157238735], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Adenine_deam_C.gap.json b/pfam_gap_rates/Adenine_deam_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..fbce52c0cb8c1341eb3ae721dbb64325bc972f17
--- /dev/null
+++ b/pfam_gap_rates/Adenine_deam_C.gap.json
@@ -0,0 +1 @@
+{"family": "Adenine_deam_C", "n_seqs": 721, "length": 173, "gap_rates": [0.8294036061026352, 0.435506241331484, 0.29958391123439665, 0.24271844660194175, 0.22191400832177532, 0.20665742024965325, 0.1927877947295423, 0.17198335644937587, 0.1636615811373093, 0.15811373092926492, 0.1539528432732316, 0.1553398058252427, 0.15117891816920942, 0.13592233009708737, 0.12482662968099861, 0.12343966712898752, 0.9278779472954231, 0.11511789181692095, 0.10540915395284327, 0.09015256588072122, 0.10263522884882108, 0.2288488210818308, 0.23717059639389737, 0.047156726768377254, 0.030513176144244106, 0.023578363384188627, 0.022191400832177532, 0.020804438280166437, 0.020804438280166437, 0.019417475728155338, 0.019417475728155338, 0.019417475728155338, 0.019417475728155338, 0.019417475728155338, 0.019417475728155338, 0.019417475728155338, 0.019417475728155338, 0.019417475728155338, 0.15811373092926492, 0.2565880721220527, 0.022191400832177532, 0.013869625520110958, 0.012482662968099861, 0.012482662968099861, 0.012482662968099861, 0.012482662968099861, 0.012482662968099861, 0.013869625520110958, 0.013869625520110958, 0.012482662968099861, 0.016643550624133148, 0.013869625520110958, 0.023578363384188627, 0.011095700416088766, 0.011095700416088766, 0.9181692094313454, 0.011095700416088766, 0.011095700416088766, 0.011095700416088766, 0.011095700416088766, 0.011095700416088766, 0.009708737864077669, 0.009708737864077669, 0.008321775312066574, 0.12482662968099861, 0.008321775312066574, 0.008321775312066574, 0.008321775312066574, 0.008321775312066574, 0.008321775312066574, 0.008321775312066574, 0.006934812760055479, 0.006934812760055479, 0.006934812760055479, 0.006934812760055479, 0.006934812760055479, 0.006934812760055479, 0.006934812760055479, 0.005547850208044383, 0.005547850208044383, 0.008321775312066574, 0.008321775312066574, 0.008321775312066574, 0.008321775312066574, 0.008321775312066574, 0.009708737864077669, 0.009708737864077669, 0.013869625520110958, 0.012482662968099861, 0.009708737864077669, 0.008321775312066574, 0.008321775312066574, 0.008321775312066574, 0.008321775312066574, 0.009708737864077669, 0.011095700416088766, 0.07073509015256588, 0.022191400832177532, 0.024965325936199722, 0.020804438280166437, 0.05131761442441054, 0.009708737864077669, 0.009708737864077669, 0.009708737864077669, 0.009708737864077669, 0.009708737864077669, 0.009708737864077669, 0.009708737864077669, 0.009708737864077669, 0.009708737864077669, 0.009708737864077669, 0.009708737864077669, 0.006934812760055479, 0.006934812760055479, 0.006934812760055479, 0.009708737864077669, 0.005547850208044383, 0.005547850208044383, 0.005547850208044383, 0.005547850208044383, 0.005547850208044383, 0.005547850208044383, 0.005547850208044383, 0.005547850208044383, 0.005547850208044383, 0.005547850208044383, 0.005547850208044383, 0.005547850208044383, 0.005547850208044383, 0.9015256588072122, 0.006934812760055479, 0.006934812760055479, 0.008321775312066574, 0.009708737864077669, 0.04160887656033287, 0.016643550624133148, 0.015256588072122053, 0.016643550624133148, 0.7517337031900139, 0.05825242718446602, 0.04160887656033287, 0.024965325936199722, 0.027739251040221916, 0.027739251040221916, 0.027739251040221916, 0.027739251040221916, 0.02912621359223301, 0.02912621359223301, 0.02912621359223301, 0.030513176144244106, 0.0319001386962552, 0.03467406380027739, 0.03467406380027739, 0.03467406380027739, 0.03467406380027739, 0.03467406380027739, 0.03467406380027739, 0.036061026352288486, 0.03744798890429958, 0.03744798890429958, 0.03744798890429958, 0.03744798890429958, 0.03744798890429958, 0.03744798890429958, 0.038834951456310676, 0.04022191400832178, 0.04022191400832178, 0.04576976421636616, 0.05825242718446602, 0.09847434119278779, 0.14840499306518723, 0.2843273231622746, 0.7406380027739251], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Adenine_glyco.gap.json b/pfam_gap_rates/Adenine_glyco.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..968d0ebceaa81ecd54234da6fe50adac38319dee
--- /dev/null
+++ b/pfam_gap_rates/Adenine_glyco.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/AdoHcyase.gap.json b/pfam_gap_rates/AdoHcyase.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f9a9c98d6480f67b007d679ced72ca4f3b64be11
--- /dev/null
+++ b/pfam_gap_rates/AdoHcyase.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Agglutinin.gap.json b/pfam_gap_rates/Agglutinin.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..0b32c8d0772bcea1eb7fd0ff89100d3834898a06
--- /dev/null
+++ b/pfam_gap_rates/Agglutinin.gap.json
@@ -0,0 +1 @@
+{"family": "Agglutinin", "n_seqs": 111, "length": 160, "gap_rates": [0.8198198198198198, 0.5765765765765766, 0.5045045045045045, 0.4144144144144144, 0.5765765765765766, 0.21621621621621623, 0.17117117117117117, 0.17117117117117117, 0.18018018018018017, 0.16216216216216217, 0.17117117117117117, 0.14414414414414414, 0.13513513513513514, 0.11711711711711711, 0.11711711711711711, 0.07207207207207207, 0.07207207207207207, 0.07207207207207207, 0.07207207207207207, 0.07207207207207207, 0.07207207207207207, 0.5585585585585585, 0.5135135135135135, 0.16216216216216217, 0.11711711711711711, 0.9459459459459459, 0.14414414414414414, 0.0990990990990991, 0.05405405405405406, 0.05405405405405406, 0.04504504504504504, 0.04504504504504504, 0.04504504504504504, 0.036036036036036036, 0.02702702702702703, 0.02702702702702703, 0.02702702702702703, 0.02702702702702703, 0.02702702702702703, 0.02702702702702703, 0.02702702702702703, 0.02702702702702703, 0.02702702702702703, 0.02702702702702703, 0.02702702702702703, 0.02702702702702703, 0.02702702702702703, 0.02702702702702703, 0.04504504504504504, 0.5855855855855856, 0.45045045045045046, 0.9459459459459459, 0.9459459459459459, 0.02702702702702703, 0.04504504504504504, 0.018018018018018018, 0.018018018018018018, 0.9459459459459459, 0.009009009009009009, 0.009009009009009009, 0.009009009009009009, 0.009009009009009009, 0.009009009009009009, 0.009009009009009009, 0.018018018018018018, 0.036036036036036036, 0.02702702702702703, 0.0, 0.0, 0.0, 0.0, 0.009009009009009009, 0.036036036036036036, 0.2882882882882883, 0.04504504504504504, 0.9369369369369369, 0.9369369369369369, 0.9369369369369369, 0.02702702702702703, 0.036036036036036036, 0.5135135135135135, 0.46846846846846846, 0.036036036036036036, 0.018018018018018018, 0.02702702702702703, 0.018018018018018018, 0.018018018018018018, 0.04504504504504504, 0.02702702702702703, 0.018018018018018018, 0.036036036036036036, 0.036036036036036036, 0.0990990990990991, 0.3783783783783784, 0.3783783783783784, 0.27927927927927926, 0.06306306306306306, 0.04504504504504504, 0.04504504504504504, 0.018018018018018018, 0.018018018018018018, 0.02702702702702703, 0.018018018018018018, 0.018018018018018018, 0.02702702702702703, 0.26126126126126126, 0.36036036036036034, 0.2702702702702703, 0.27927927927927926, 0.4144144144144144, 0.36036036036036034, 0.36936936936936937, 0.2882882882882883, 0.21621621621621623, 0.2072072072072072, 0.2072072072072072, 0.1981981981981982, 0.1891891891891892, 0.2072072072072072, 0.2072072072072072, 0.2072072072072072, 0.21621621621621623, 0.22522522522522523, 0.22522522522522523, 0.23423423423423423, 0.26126126126126126, 0.27927927927927926, 0.2972972972972973, 0.3063063063063063, 0.3153153153153153, 0.3153153153153153, 0.35135135135135137, 0.36936936936936937, 0.36036036036036034, 0.36936936936936937, 0.8828828828828829, 0.6216216216216216, 0.36936936936936937, 0.35135135135135137, 0.34234234234234234, 0.34234234234234234, 0.34234234234234234, 0.36036036036036034, 0.3783783783783784, 0.40540540540540543, 0.4144144144144144, 0.4144144144144144, 0.42342342342342343, 0.4594594594594595, 0.5315315315315315, 0.5495495495495496, 0.5495495495495496, 0.7027027027027027, 0.7387387387387387, 0.6846846846846847, 0.6936936936936937, 0.7387387387387387, 0.7657657657657657, 0.8018018018018018, 0.8288288288288288], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/AhpC-TSA.gap.json b/pfam_gap_rates/AhpC-TSA.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..0fa1008948f2083221e2b05317767a75928efc99
--- /dev/null
+++ b/pfam_gap_rates/AhpC-TSA.gap.json
@@ -0,0 +1 @@
+{"family": "AhpC-TSA", "n_seqs": 5000, "length": 159, "gap_rates": [0.6098, 0.3146, 0.2626, 0.2098, 0.175, 0.1562, 0.1332, 0.1214, 0.1134, 0.106, 0.0968, 0.7854, 0.9116, 0.9476, 0.7964, 0.767, 0.0854, 0.0788, 0.0798, 0.1574, 0.0608, 0.0574, 0.054, 0.0518, 0.0516, 0.0452, 0.0422, 0.0402, 0.9238, 0.8176, 0.0372, 0.04, 0.8376, 0.0588, 0.0308, 0.029, 0.0274, 0.0272, 0.0262, 0.0258, 0.0258, 0.026, 0.0268, 0.3828, 0.03, 0.028, 0.0272, 0.027, 0.0314, 0.0314, 0.0318, 0.0314, 0.029, 0.0278, 0.0272, 0.0252, 0.0252, 0.024, 0.0254, 0.0268, 0.0346, 0.0318, 0.0322, 0.0278, 0.1128, 0.071, 0.0346, 0.0242, 0.0256, 0.0228, 0.0212, 0.0206, 0.021, 0.0196, 0.0198, 0.9088, 0.0206, 0.0216, 0.0214, 0.0206, 0.8264, 0.8786, 0.9102, 0.9464, 0.9332, 0.8984, 0.8572, 0.775, 0.0262, 0.0282, 0.0272, 0.0274, 0.0278, 0.0276, 0.0276, 0.0292, 0.0294, 0.0256, 0.6596, 0.686, 0.7676, 0.8442, 0.7658, 0.6738, 0.6144, 0.0262, 0.0262, 0.026, 0.0266, 0.027, 0.0282, 0.0298, 0.0368, 0.9402, 0.9224, 0.0658, 0.0418, 0.0368, 0.0356, 0.0354, 0.037, 0.0368, 0.036, 0.0364, 0.0376, 0.0398, 0.042, 0.3534, 0.3586, 0.3694, 0.6864, 0.749, 0.7702, 0.9282, 0.9488, 0.9356, 0.9246, 0.7578, 0.7372, 0.659, 0.4264, 0.3512, 0.3254, 0.055, 0.053, 0.0516, 0.052, 0.0524, 0.053, 0.0532, 0.054, 0.056, 0.0638, 0.0722, 0.0746, 0.0926, 0.1072, 0.1752, 0.4084], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Ala_racemase_N.gap.json b/pfam_gap_rates/Ala_racemase_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..3916362d4d05aee2000de5ebab7c0f81b0eb0f2d
--- /dev/null
+++ b/pfam_gap_rates/Ala_racemase_N.gap.json
@@ -0,0 +1 @@
+{"family": "Ala_racemase_N", "n_seqs": 5000, "length": 267, "gap_rates": [0.5288, 0.4226, 0.3492, 0.2948, 0.2544, 0.1992, 0.1864, 0.1716, 0.162, 0.1524, 0.1452, 0.1358, 0.126, 0.1184, 0.1122, 0.1084, 0.106, 0.6652, 0.328, 0.1036, 0.7888, 0.7392, 0.0824, 0.061, 0.081, 0.0482, 0.0438, 0.0426, 0.0412, 0.0408, 0.0414, 0.041, 0.5396, 0.4698, 0.2566, 0.2404, 0.0536, 0.0472, 0.0492, 0.0842, 0.0756, 0.0514, 0.0418, 0.0388, 0.3208, 0.1572, 0.1468, 0.3506, 0.0904, 0.1772, 0.032, 0.0304, 0.027, 0.0258, 0.0258, 0.0258, 0.0256, 0.0258, 0.0256, 0.026, 0.0266, 0.0256, 0.0254, 0.7998, 0.8174, 0.93, 0.94, 0.9238, 0.8026, 0.7876, 0.0256, 0.0448, 0.0462, 0.0484, 0.0508, 0.1404, 0.141, 0.903, 0.7722, 0.0834, 0.0518, 0.0768, 0.0336, 0.0616, 0.0418, 0.0326, 0.033, 0.0304, 0.9168, 0.9448, 0.736, 0.0588, 0.0368, 0.0338, 0.0238, 0.0226, 0.021, 0.0236, 0.023, 0.0276, 0.0282, 0.0226, 0.8216, 0.8614, 0.9016, 0.8322, 0.8184, 0.0238, 0.6324, 0.0382, 0.0248, 0.017, 0.018, 0.0152, 0.0138, 0.0134, 0.0132, 0.0154, 0.0132, 0.0132, 0.012, 0.012, 0.012, 0.012, 0.012, 0.0126, 0.0128, 0.015, 0.0778, 0.22, 0.899, 0.9394, 0.8402, 0.1866, 0.102, 0.058, 0.0282, 0.0232, 0.0162, 0.0122, 0.0118, 0.0116, 0.0114, 0.0114, 0.0116, 0.0116, 0.0118, 0.0184, 0.0124, 0.5974, 0.591, 0.0118, 0.0122, 0.0122, 0.95, 0.012, 0.0124, 0.0122, 0.7496, 0.015, 0.0156, 0.0146, 0.0216, 0.017, 0.0196, 0.0164, 0.0156, 0.017, 0.0162, 0.0182, 0.026, 0.915, 0.071, 0.0478, 0.0468, 0.9072, 0.0254, 0.016, 0.0142, 0.0132, 0.0128, 0.0124, 0.012, 0.0124, 0.0124, 0.0124, 0.0128, 0.0138, 0.0206, 0.8734, 0.8908, 0.9192, 0.9056, 0.879, 0.8612, 0.015, 0.0748, 0.1328, 0.0778, 0.8, 0.9076, 0.5486, 0.4002, 0.124, 0.087, 0.0782, 0.0336, 0.8522, 0.0276, 0.0262, 0.0252, 0.0238, 0.0242, 0.0228, 0.023, 0.0238, 0.0246, 0.0254, 0.0302, 0.0312, 0.0782, 0.2918, 0.2494, 0.1376, 0.7658, 0.1076, 0.1046, 0.1562, 0.1298, 0.8872, 0.8714, 0.099, 0.0736, 0.039, 0.0398, 0.0396, 0.04, 0.0404, 0.0414, 0.0484, 0.0522, 0.0564, 0.0608, 0.064, 0.9358, 0.8162, 0.0718, 0.512, 0.1264, 0.078, 0.9114, 0.6528, 0.0782, 0.0782, 0.078, 0.078, 0.0782, 0.0784, 0.0788, 0.0848, 0.0884, 0.0966, 0.1106, 0.1628, 0.2142, 0.3394, 0.638], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Aldo_ket_red.gap.json b/pfam_gap_rates/Aldo_ket_red.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..26d23934767e734e36a53fcddafe5f95e8ab7537
--- /dev/null
+++ b/pfam_gap_rates/Aldo_ket_red.gap.json
@@ -0,0 +1 @@
+{"family": "Aldo_ket_red", "n_seqs": 5000, "length": 360, "gap_rates": [0.7602, 0.3574, 0.2948, 0.264, 0.2532, 0.2496, 0.2486, 0.2882, 0.2926, 0.295, 0.3612, 0.5072, 0.7522, 0.853, 0.936, 0.9022, 0.8288, 0.6576, 0.6122, 0.337, 0.3052, 0.263, 0.2116, 0.1586, 0.1458, 0.1384, 0.1306, 0.1236, 0.1176, 0.1124, 0.1106, 0.1072, 0.1064, 0.106, 0.104, 0.103, 0.102, 0.1014, 0.1006, 0.1002, 0.0992, 0.1004, 0.1004, 0.1006, 0.1008, 0.1, 0.0992, 0.8778, 0.9256, 0.9452, 0.9376, 0.9202, 0.871, 0.4612, 0.4528, 0.3636, 0.0998, 0.097, 0.0964, 0.0958, 0.0956, 0.095, 0.1, 0.0992, 0.0976, 0.097, 0.0966, 0.098, 0.8586, 0.8814, 0.8674, 0.8068, 0.5054, 0.39, 0.2712, 0.11, 0.0984, 0.0918, 0.0906, 0.0904, 0.0892, 0.088, 0.0876, 0.0866, 0.0868, 0.087, 0.6136, 0.8038, 0.8678, 0.9004, 0.9384, 0.9452, 0.9474, 0.9422, 0.9238, 0.8892, 0.843, 0.746, 0.5836, 0.5436, 0.5164, 0.4894, 0.4732, 0.4454, 0.4124, 0.1646, 0.1508, 0.101, 0.099, 0.1016, 0.1022, 0.1024, 0.0946, 0.092, 0.0908, 0.0906, 0.0892, 0.0868, 0.0858, 0.0852, 0.0854, 0.085, 0.0848, 0.084, 0.084, 0.0832, 0.0828, 0.099, 0.0948, 0.0846, 0.0838, 0.0838, 0.0838, 0.0842, 0.084, 0.0836, 0.0836, 0.0834, 0.0878, 0.0858, 0.0894, 0.0872, 0.0878, 0.0866, 0.6872, 0.7408, 0.7784, 0.807, 0.8196, 0.8534, 0.867, 0.8792, 0.902, 0.9322, 0.9454, 0.9094, 0.888, 0.874, 0.8602, 0.8394, 0.8144, 0.796, 0.7636, 0.7094, 0.5924, 0.148, 0.1204, 0.0912, 0.086, 0.0836, 0.0824, 0.0818, 0.0794, 0.0794, 0.0796, 0.0792, 0.079, 0.079, 0.0866, 0.0804, 0.0794, 0.0802, 0.08, 0.0792, 0.079, 0.079, 0.0796, 0.0804, 0.0826, 0.0836, 0.0832, 0.88, 0.086, 0.0866, 0.087, 0.0856, 0.0862, 0.091, 0.087, 0.6696, 0.8132, 0.6976, 0.6126, 0.2856, 0.2666, 0.1076, 0.0936, 0.0926, 0.0934, 0.0952, 0.0926, 0.0922, 0.0914, 0.091, 0.0908, 0.0898, 0.089, 0.0888, 0.0896, 0.0912, 0.091, 0.9446, 0.9262, 0.7974, 0.4306, 0.3682, 0.0962, 0.0954, 0.0932, 0.0934, 0.0938, 0.0942, 0.0936, 0.0938, 0.093, 0.0928, 0.093, 0.0934, 0.1042, 0.0946, 0.0944, 0.0952, 0.0968, 0.0986, 0.1012, 0.102, 0.1028, 0.1056, 0.1074, 0.112, 0.144, 0.1438, 0.1534, 0.1586, 0.1632, 0.3408, 0.344, 0.3498, 0.3582, 0.4188, 0.4118, 0.407, 0.409, 0.4296, 0.4636, 0.545, 0.5542, 0.5582, 0.5474, 0.5428, 0.5564, 0.5828, 0.6218, 0.6356, 0.5794, 0.6352, 0.691, 0.8506, 0.8886, 0.927, 0.9416, 0.9124, 0.8722, 0.8042, 0.6628, 0.6092, 0.5704, 0.5608, 0.542, 0.502, 0.4662, 0.3768, 0.2606, 0.1856, 0.1602, 0.1514, 0.147, 0.1436, 0.143, 0.1428, 0.1426, 0.1446, 0.144, 0.1472, 0.146, 0.1428, 0.1416, 0.14, 0.1398, 0.1388, 0.1384, 0.1394, 0.1386, 0.1386, 0.1388, 0.1388, 0.1392, 0.1392, 0.4804, 0.452, 0.1424, 0.1414, 0.1414, 0.1416, 0.141, 0.1416, 0.1418, 0.142, 0.1422, 0.144, 0.1446, 0.145, 0.1448, 0.1446, 0.145, 0.1454, 0.1458, 0.1458, 0.1464, 0.1476, 0.1488, 0.1516, 0.1548, 0.2242, 0.2124, 0.8852, 0.1826, 0.184, 0.1866, 0.1904, 0.1944, 0.2006, 0.2046, 0.2118, 0.2204, 0.2292, 0.2696, 0.332, 0.4472, 0.8286], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Alg6_Alg8.gap.json b/pfam_gap_rates/Alg6_Alg8.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..92115be4be142f41f3dafc9b6ed55c45a2ea0db5
--- /dev/null
+++ b/pfam_gap_rates/Alg6_Alg8.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Alginate_exp.gap.json b/pfam_gap_rates/Alginate_exp.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..1cc3c8ba0fcdcae174c7adb1289fe9229f7992ad
--- /dev/null
+++ b/pfam_gap_rates/Alginate_exp.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Alginate_lyase.gap.json b/pfam_gap_rates/Alginate_lyase.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ad967de0896259c0ad2a81b5d36d1eaff5a11f1b
--- /dev/null
+++ b/pfam_gap_rates/Alginate_lyase.gap.json
@@ -0,0 +1 @@
+{"family": "Alginate_lyase", "n_seqs": 489, "length": 351, "gap_rates": [0.9100204498977505, 0.8057259713701431, 0.7770961145194274, 0.7689161554192229, 0.7505112474437627, 0.7402862985685071, 0.7198364008179959, 0.7137014314928425, 0.9161554192229039, 0.6768916155419223, 0.6666666666666666, 0.6523517382413088, 0.6441717791411042, 0.6380368098159509, 0.6380368098159509, 0.6278118609406953, 0.6196319018404908, 0.6155419222903885, 0.6073619631901841, 0.6032719836400818, 0.6012269938650306, 0.5991820040899796, 0.6114519427402862, 0.6155419222903885, 0.6175869120654397, 0.7157464212678937, 0.9386503067484663, 0.6952965235173824, 0.6196319018404908, 0.6359918200408998, 0.6298568507157464, 0.6114519427402862, 0.5501022494887525, 0.8323108384458078, 0.8486707566462167, 0.8813905930470347, 0.8916155419222904, 0.918200408997955, 0.9284253578732107, 0.9222903885480572, 0.8936605316973415, 0.8834355828220859, 0.8629856850715747, 0.8486707566462167, 0.8220858895705522, 0.5051124744376279, 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\ No newline at end of file
diff --git a/pfam_gap_rates/Alkyl_sulf_dimr.gap.json b/pfam_gap_rates/Alkyl_sulf_dimr.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..970a607ec23a52ab7ffd995860a9c8c58e487d5e
--- /dev/null
+++ b/pfam_gap_rates/Alkyl_sulf_dimr.gap.json
@@ -0,0 +1 @@
+{"family": "Alkyl_sulf_dimr", "n_seqs": 375, "length": 139, "gap_rates": [0.4533333333333333, 0.328, 0.14933333333333335, 0.128, 0.12, 0.10666666666666667, 0.09333333333333334, 0.088, 0.08, 0.07733333333333334, 0.07733333333333334, 0.07466666666666667, 0.07466666666666667, 0.072, 0.07466666666666667, 0.10933333333333334, 0.12266666666666666, 0.12, 0.112, 0.07466666666666667, 0.05333333333333334, 0.050666666666666665, 0.050666666666666665, 0.050666666666666665, 0.050666666666666665, 0.050666666666666665, 0.050666666666666665, 0.048, 0.048, 0.048, 0.048, 0.048, 0.048, 0.048, 0.048, 0.048, 0.048, 0.048, 0.04533333333333334, 0.04533333333333334, 0.048, 0.050666666666666665, 0.050666666666666665, 0.050666666666666665, 0.04, 0.04, 0.042666666666666665, 0.04, 0.04, 0.04, 0.04, 0.042666666666666665, 0.04, 0.04, 0.04, 0.04, 0.037333333333333336, 0.037333333333333336, 0.037333333333333336, 0.037333333333333336, 0.037333333333333336, 0.034666666666666665, 0.037333333333333336, 0.034666666666666665, 0.029333333333333333, 0.02666666666666667, 0.02666666666666667, 0.09866666666666667, 0.024, 0.024, 0.024, 0.021333333333333333, 0.021333333333333333, 0.021333333333333333, 0.021333333333333333, 0.021333333333333333, 0.021333333333333333, 0.024, 0.04, 0.029333333333333333, 0.029333333333333333, 0.034666666666666665, 0.024, 0.018666666666666668, 0.021333333333333333, 0.021333333333333333, 0.021333333333333333, 0.021333333333333333, 0.021333333333333333, 0.021333333333333333, 0.021333333333333333, 0.021333333333333333, 0.021333333333333333, 0.021333333333333333, 0.024, 0.024, 0.029333333333333333, 0.032, 0.037333333333333336, 0.04, 0.04, 0.050666666666666665, 0.04, 0.037333333333333336, 0.032, 0.032, 0.032, 0.032, 0.029333333333333333, 0.032, 0.032, 0.034666666666666665, 0.034666666666666665, 0.034666666666666665, 0.04, 0.04533333333333334, 0.05333333333333334, 0.05333333333333334, 0.058666666666666666, 0.06133333333333333, 0.06666666666666667, 0.072, 0.07733333333333334, 0.08533333333333333, 0.088, 0.09333333333333334, 0.096, 0.096, 0.096, 0.09866666666666667, 0.10666666666666667, 0.11466666666666667, 0.12533333333333332, 0.13066666666666665, 0.144, 0.16266666666666665, 0.22133333333333333, 0.392, 0.624], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Alpha-amyl_C2.gap.json b/pfam_gap_rates/Alpha-amyl_C2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..3ddfa5bfe720fbc453811b7cc52c5ac96c94e2e5
--- /dev/null
+++ b/pfam_gap_rates/Alpha-amyl_C2.gap.json
@@ -0,0 +1 @@
+{"family": "Alpha-amyl_C2", "n_seqs": 213, "length": 71, "gap_rates": [0.3286384976525822, 0.06103286384976526, 0.023474178403755867, 0.023474178403755867, 0.023474178403755867, 0.023474178403755867, 0.009389671361502348, 0.009389671361502348, 0.009389671361502348, 0.004694835680751174, 0.004694835680751174, 0.004694835680751174, 0.004694835680751174, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.9295774647887324, 0.9295774647887324, 0.92018779342723, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.5258215962441315, 0.5258215962441315, 0.9483568075117371, 0.5258215962441315, 0.5164319248826291, 0.0, 0.004694835680751174, 0.004694835680751174, 0.004694835680751174, 0.09859154929577464, 0.8732394366197183, 0.8826291079812206, 0.8779342723004695, 0.7981220657276995, 0.6525821596244131, 0.4084507042253521, 0.38028169014084506, 0.014084507042253521, 0.018779342723004695, 0.9342723004694836, 0.018779342723004695, 0.018779342723004695, 0.028169014084507043, 0.028169014084507043, 0.028169014084507043, 0.028169014084507043, 0.03286384976525822, 0.028169014084507043, 0.028169014084507043, 0.028169014084507043, 0.03755868544600939, 0.03755868544600939, 0.16901408450704225], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Alpha-mann_mid.gap.json b/pfam_gap_rates/Alpha-mann_mid.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a8abc731f0b3662e937b3cb326532b6ada10ddba
--- /dev/null
+++ b/pfam_gap_rates/Alpha-mann_mid.gap.json
@@ -0,0 +1 @@
+{"family": "Alpha-mann_mid", "n_seqs": 1405, "length": 91, "gap_rates": [0.5437722419928825, 0.20640569395017794, 0.17580071174377224, 0.1423487544483986, 0.10818505338078292, 0.10177935943060498, 0.08398576512455516, 0.05551601423487545, 0.04199288256227758, 0.0398576512455516, 0.03701067615658363, 0.03558718861209965, 0.03345195729537367, 0.03202846975088968, 0.0298932384341637, 0.027758007117437724, 0.02704626334519573, 0.026334519572953737, 0.026334519572953737, 0.026334519572953737, 0.024199288256227757, 0.02491103202846975, 0.023487544483985764, 0.021352313167259787, 0.8939501779359431, 0.021352313167259787, 0.023487544483985764, 0.024199288256227757, 0.022775800711743774, 0.023487544483985764, 0.022775800711743774, 0.022775800711743774, 0.02206405693950178, 0.02206405693950178, 0.02206405693950178, 0.02206405693950178, 0.20427046263345194, 0.2412811387900356, 0.7786476868327402, 0.48185053380782916, 0.8313167259786477, 0.9060498220640569, 0.9395017793594306, 0.8626334519572953, 0.799288256227758, 0.3487544483985765, 0.22491103202846974, 0.8889679715302491, 0.9487544483985765, 0.9224199288256227, 0.8540925266903915, 0.11530249110320284, 0.052669039145907474, 0.04697508896797153, 0.03701067615658363, 0.054804270462633455, 0.02704626334519573, 0.019217081850533807, 0.01708185053380783, 0.014234875444839857, 0.014234875444839857, 0.013523131672597865, 0.012811387900355872, 0.012811387900355872, 0.012099644128113879, 0.010676156583629894, 0.0099644128113879, 0.0099644128113879, 0.009252669039145907, 0.009252669039145907, 0.014234875444839857, 0.015658362989323844, 0.015658362989323844, 0.017793594306049824, 0.021352313167259787, 0.021352313167259787, 0.023487544483985764, 0.025622775800711744, 0.025622775800711744, 0.028469750889679714, 0.032740213523131674, 0.03345195729537367, 0.034875444839857654, 0.03772241992882562, 0.04555160142348755, 0.06476868327402135, 0.08612099644128114, 0.10889679715302492, 0.18362989323843418, 0.3494661921708185, 0.6377224199288256], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Apt1.gap.json b/pfam_gap_rates/Apt1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f3a513e7bbd79f444f03709157c3391bdca3aed6
--- /dev/null
+++ b/pfam_gap_rates/Apt1.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/AraC_binding.gap.json b/pfam_gap_rates/AraC_binding.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a2294dd4a8f04e085d7eaabaa757dca0b8295c09
--- /dev/null
+++ b/pfam_gap_rates/AraC_binding.gap.json
@@ -0,0 +1 @@
+{"family": "AraC_binding", "n_seqs": 4568, "length": 152, "gap_rates": [0.9034588441330998, 0.8524518388791593, 0.8097635726795096, 0.773861646234676, 0.7401488616462347, 0.7044658493870403, 0.6683450087565674, 0.6247810858143608, 0.5809982486865148, 0.5054728546409807, 0.4450525394045534, 0.3824430823117338, 0.32596322241681264, 0.2760507880910683, 0.9233800350262698, 0.19308231173380036, 0.12675131348511384, 0.08844133099824869, 0.07683887915936953, 0.06633099824868652, 0.0446584938704028, 0.9452714535901926, 0.03086690017513135, 0.023423817863397547, 0.017513134851138354, 0.012478108581436076, 0.010288966725043782, 0.00788091068301226, 0.005691768826619965, 0.005253940455341506, 0.004597197898423818, 0.004597197898423818, 0.004159369527145359, 0.0037215411558669, 0.0035026269702276708, 0.0032837127845884414, 0.003064798598949212, 0.0024080560420315237, 0.0024080560420315237, 0.002626970227670753, 0.0024080560420315237, 0.001970227670753065, 0.001532399299474606, 0.001970227670753065, 0.001532399299474606, 0.0006567425569176883, 0.00043782837127845885, 0.0010945709281961471, 0.0008756567425569177, 0.0008756567425569177, 0.0008756567425569177, 0.0010945709281961471, 0.0006567425569176883, 0.0006567425569176883, 0.0017513134851138354, 0.0017513134851138354, 0.0028458844133099825, 0.004597197898423818, 0.006567425569176883, 0.010070052539404553, 0.01838879159369527, 0.025612959719789843, 0.03239929947460595, 0.03896672504378284, 0.042250437828371276, 0.2826182136602452, 0.3728108581436077, 0.9028021015761821, 0.11186514886164624, 0.10836252189141857, 0.11536777583187391, 0.12302977232924693, 0.1287215411558669, 0.13485113835376533, 0.1368213660245184, 0.14251313485113834, 0.14601576182136602, 0.1591506129597198, 0.17666374781085814, 0.2119089316987741, 0.21847635726795098, 0.22964098073555167, 0.24452714535901926, 0.25459719789842383, 0.26816987740805603, 0.3145796847635727, 0.31654991243432573, 0.3450087565674256, 0.34260070052539404, 0.34478984238178634, 0.3745621716287215, 0.37259194395796846, 0.3942644483362522, 0.396015761821366, 0.4365148861646235, 0.45446584938704027, 0.4864273204903678, 0.5282399299474606, 0.5971978984238179, 0.6457968476357268, 0.7265761821366025, 0.7933450087565674, 0.8393169877408057, 0.8837565674255692, 0.9260070052539404, 0.9419877408056042, 0.9071803852889667, 0.8618651488616462, 0.821584938704028, 0.7640105078809106, 0.6773204903677759, 0.44833625218914186, 0.46847635726795095, 0.4682574430823117, 0.4686952714535902, 0.4708844133099825, 0.47197898423817863, 0.47416812609457093, 0.47657618213660247, 0.47942206654991243, 0.4813922942206655, 0.483800350262697, 0.4881786339754816, 0.49058669001751315, 0.4956217162872154, 0.5010945709281961, 0.5102889667250438, 0.5207968476357268, 0.5286777583187391, 0.9034588441330998, 0.9382661996497373, 0.9192206654991243, 0.8734676007005254, 0.7029334500875657, 0.6852014010507881, 0.62784588441331, 0.6247810858143608, 0.6335376532399299, 0.6416374781085814, 0.6506129597197898, 0.6598073555166375, 0.6720665499124343, 0.6819176882661997, 0.6939579684763573, 0.7024956217162872, 0.7119089316987741, 0.7206654991243433, 0.7329246935201401, 0.7567863397548161, 0.7880910683012259, 0.8200525394045534, 0.9067425569176882], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Arabinose_Isome.gap.json b/pfam_gap_rates/Arabinose_Isome.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ed23a733af23f02ed2a5827968fb0cd140cc2859
--- /dev/null
+++ b/pfam_gap_rates/Arabinose_Isome.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Archease.gap.json b/pfam_gap_rates/Archease.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..03b939c57792ad9eee1f30412dc77b076591d82d
--- /dev/null
+++ b/pfam_gap_rates/Archease.gap.json
@@ -0,0 +1 @@
+{"family": "Archease", "n_seqs": 408, "length": 151, "gap_rates": [0.25980392156862747, 0.21568627450980393, 0.16176470588235295, 0.13970588235294118, 0.13480392156862744, 0.1323529411764706, 0.11519607843137254, 0.11274509803921569, 0.11274509803921569, 0.10784313725490197, 0.09313725490196079, 0.09068627450980392, 0.09068627450980392, 0.08823529411764706, 0.0857843137254902, 0.0784313725490196, 0.0784313725490196, 0.08088235294117647, 0.0784313725490196, 0.07598039215686274, 0.07352941176470588, 0.07352941176470588, 0.07352941176470588, 0.07352941176470588, 0.07352941176470588, 0.07352941176470588, 0.06862745098039216, 0.06862745098039216, 0.06372549019607843, 0.051470588235294115, 0.05392156862745098, 0.05392156862745098, 0.05392156862745098, 0.041666666666666664, 0.04411764705882353, 0.04411764705882353, 0.8970588235294118, 0.09313725490196079, 0.056372549019607844, 0.051470588235294115, 0.061274509803921566, 0.051470588235294115, 0.051470588235294115, 0.05392156862745098, 0.07598039215686274, 0.07107843137254902, 0.0392156862745098, 0.9142156862745098, 0.9485294117647058, 0.8921568627450981, 0.029411764705882353, 0.029411764705882353, 0.029411764705882353, 0.031862745098039214, 0.031862745098039214, 0.029411764705882353, 0.031862745098039214, 0.029411764705882353, 0.029411764705882353, 0.029411764705882353, 0.031862745098039214, 0.03676470588235294, 0.0392156862745098, 0.03676470588235294, 0.031862745098039214, 0.031862745098039214, 0.029411764705882353, 0.029411764705882353, 0.029411764705882353, 0.02696078431372549, 0.02696078431372549, 0.02696078431372549, 0.02696078431372549, 0.02696078431372549, 0.02696078431372549, 0.02696078431372549, 0.02696078431372549, 0.8284313725490197, 0.0392156862745098, 0.03431372549019608, 0.031862745098039214, 0.029411764705882353, 0.03431372549019608, 0.03431372549019608, 0.03431372549019608, 0.25245098039215685, 0.23039215686274508, 0.8602941176470589, 0.9313725490196079, 0.8799019607843137, 0.8259803921568627, 0.35294117647058826, 0.47549019607843135, 0.5318627450980392, 0.9387254901960784, 0.22303921568627452, 0.1715686274509804, 0.06862745098039216, 0.056372549019607844, 0.05392156862745098, 0.049019607843137254, 0.05392156862745098, 0.051470588235294115, 0.04656862745098039, 0.049019607843137254, 0.041666666666666664, 0.04411764705882353, 0.041666666666666664, 0.041666666666666664, 0.041666666666666664, 0.0392156862745098, 0.0392156862745098, 0.11029411764705882, 0.11029411764705882, 0.11519607843137254, 0.18627450980392157, 0.16176470588235295, 0.20098039215686275, 0.13480392156862744, 0.0661764705882353, 0.9191176470588235, 0.049019607843137254, 0.049019607843137254, 0.049019607843137254, 0.049019607843137254, 0.049019607843137254, 0.049019607843137254, 0.049019607843137254, 0.049019607843137254, 0.049019607843137254, 0.049019607843137254, 0.049019607843137254, 0.049019607843137254, 0.049019607843137254, 0.049019607843137254, 0.051470588235294115, 0.928921568627451, 0.8848039215686274, 0.056372549019607844, 0.06372549019607843, 0.14705882352941177, 0.09313725490196079, 0.07598039215686274, 0.07107843137254902, 0.0661764705882353, 0.07598039215686274, 0.0784313725490196, 0.0857843137254902, 0.08823529411764706, 0.09068627450980392, 0.16176470588235295], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/ArdA.gap.json b/pfam_gap_rates/ArdA.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..fd8b14f777de80c187ba24663bae057cf9a139b0
--- /dev/null
+++ b/pfam_gap_rates/ArdA.gap.json
@@ -0,0 +1 @@
+{"family": "ArdA", "n_seqs": 248, "length": 217, "gap_rates": [0.3951612903225806, 0.31048387096774194, 0.29838709677419356, 0.2782258064516129, 0.2782258064516129, 0.2782258064516129, 0.24596774193548387, 0.24193548387096775, 0.23790322580645162, 0.22580645161290322, 0.2217741935483871, 0.21774193548387097, 0.21774193548387097, 0.20967741935483872, 0.16129032258064516, 0.11290322580645161, 0.0846774193548387, 0.07661290322580645, 0.06854838709677419, 0.06854838709677419, 0.06854838709677419, 0.06854838709677419, 0.8870967741935484, 0.8790322580645161, 0.07661290322580645, 0.06451612903225806, 0.06048387096774194, 0.06048387096774194, 0.06048387096774194, 0.06048387096774194, 0.06048387096774194, 0.06048387096774194, 0.06048387096774194, 0.06048387096774194, 0.06048387096774194, 0.08064516129032258, 0.27419354838709675, 0.8790322580645161, 0.9112903225806451, 0.7983870967741935, 0.2701612903225806, 0.3024193548387097, 0.08870967741935484, 0.7419354838709677, 0.9032258064516129, 0.9395161290322581, 0.9395161290322581, 0.8387096774193549, 0.4798387096774194, 0.125, 0.10483870967741936, 0.06451612903225806, 0.06048387096774194, 0.06048387096774194, 0.06048387096774194, 0.06048387096774194, 0.05241935483870968, 0.05241935483870968, 0.05241935483870968, 0.05241935483870968, 0.04435483870967742, 0.6693548387096774, 0.6935483870967742, 0.907258064516129, 0.9314516129032258, 0.8951612903225806, 0.6854838709677419, 0.6411290322580645, 0.22580645161290322, 0.125, 0.10483870967741936, 0.532258064516129, 0.07661290322580645, 0.07661290322580645, 0.06451612903225806, 0.056451612903225805, 0.04838709677419355, 0.8588709677419355, 0.8830645161290323, 0.9193548387096774, 0.9032258064516129, 0.8669354838709677, 0.8387096774193549, 0.04838709677419355, 0.04435483870967742, 0.04435483870967742, 0.04435483870967742, 0.04435483870967742, 0.04435483870967742, 0.04435483870967742, 0.04435483870967742, 0.04032258064516129, 0.04435483870967742, 0.05241935483870968, 0.27419354838709675, 0.2701612903225806, 0.2620967741935484, 0.06048387096774194, 0.06451612903225806, 0.06451612903225806, 0.04838709677419355, 0.04032258064516129, 0.04435483870967742, 0.8548387096774194, 0.4475806451612903, 0.22580645161290322, 0.20161290322580644, 0.17338709677419356, 0.1774193548387097, 0.1814516129032258, 0.1814516129032258, 0.1814516129032258, 0.1935483870967742, 0.18548387096774194, 0.18951612903225806, 0.1935483870967742, 0.2056451612903226, 0.6814516129032258, 0.7661290322580645, 0.8588709677419355, 0.782258064516129, 0.7419354838709677, 0.5362903225806451, 0.04838709677419355, 0.05241935483870968, 0.04838709677419355, 0.056451612903225805, 0.05241935483870968, 0.04032258064516129, 0.04435483870967742, 0.13709677419354838, 0.06854838709677419, 0.06451612903225806, 0.06451612903225806, 0.9314516129032258, 0.5120967741935484, 0.06451612903225806, 0.04838709677419355, 0.07661290322580645, 0.04838709677419355, 0.05241935483870968, 0.06854838709677419, 0.06451612903225806, 0.06451612903225806, 0.06451612903225806, 0.020161290322580645, 0.7016129032258065, 0.717741935483871, 0.7338709677419355, 0.7943548387096774, 0.8306451612903226, 0.8346774193548387, 0.8387096774193549, 0.8508064516129032, 0.8548387096774194, 0.8548387096774194, 0.8548387096774194, 0.842741935483871, 0.8346774193548387, 0.8306451612903226, 0.7983870967741935, 0.7419354838709677, 0.7217741935483871, 0.7056451612903226, 0.7016129032258065, 0.020161290322580645, 0.020161290322580645, 0.020161290322580645, 0.020161290322580645, 0.020161290322580645, 0.020161290322580645, 0.016129032258064516, 0.016129032258064516, 0.016129032258064516, 0.020161290322580645, 0.016129032258064516, 0.7943548387096774, 0.7741935483870968, 0.782258064516129, 0.9475806451612904, 0.875, 0.25, 0.6814516129032258, 0.1774193548387097, 0.0846774193548387, 0.024193548387096774, 0.024193548387096774, 0.04032258064516129, 0.14516129032258066, 0.10080645161290322, 0.09274193548387097, 0.016129032258064516, 0.016129032258064516, 0.016129032258064516, 0.016129032258064516, 0.016129032258064516, 0.016129032258064516, 0.016129032258064516, 0.020161290322580645, 0.016129032258064516, 0.016129032258064516, 0.028225806451612902, 0.020161290322580645, 0.020161290322580645, 0.016129032258064516, 0.020161290322580645, 0.06854838709677419, 0.03225806451612903, 0.04032258064516129, 0.04435483870967742, 0.14919354838709678, 0.15725806451612903, 0.10483870967741936, 0.125, 0.16532258064516128, 0.2217741935483871, 0.35080645161290325], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/ArgoMid.gap.json b/pfam_gap_rates/ArgoMid.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..5f346195551d413791f5f31f1342a84cba8ceb58
--- /dev/null
+++ b/pfam_gap_rates/ArgoMid.gap.json
@@ -0,0 +1 @@
+{"family": "ArgoMid", "n_seqs": 603, "length": 83, "gap_rates": [0.7197346600331676, 0.1111111111111111, 0.0845771144278607, 0.03648424543946932, 0.03150912106135987, 0.028192371475953566, 0.026533996683250415, 0.026533996683250415, 0.02321724709784411, 0.02321724709784411, 0.014925373134328358, 0.01658374792703151, 0.01658374792703151, 0.014925373134328358, 0.014925373134328358, 0.014925373134328358, 0.014925373134328358, 0.8922056384742952, 0.014925373134328358, 0.011608623548922056, 0.009950248756218905, 0.009950248756218905, 0.009950248756218905, 0.009950248756218905, 0.008291873963515755, 0.008291873963515755, 0.008291873963515755, 0.008291873963515755, 0.03316749585406302, 0.03316749585406302, 0.4975124378109453, 0.4593698175787728, 0.0912106135986733, 0.03980099502487562, 0.04809286898839138, 0.03814262023217247, 0.06799336650082918, 0.05472636815920398, 0.011608623548922056, 0.011608623548922056, 0.01990049751243781, 0.01824212271973466, 0.01658374792703151, 0.011608623548922056, 0.009950248756218905, 0.011608623548922056, 0.013266998341625208, 0.014925373134328358, 0.014925373134328358, 0.014925373134328358, 0.014925373134328358, 0.01658374792703151, 0.01658374792703151, 0.01824212271973466, 0.01824212271973466, 0.02321724709784411, 0.04145936981757877, 0.04643449419568822, 0.04643449419568822, 0.06135986733001658, 0.08291873963515754, 0.0945273631840796, 0.09950248756218906, 0.10281923714759536, 0.11608623548922056, 0.13930348258706468, 0.16583747927031509, 0.17412935323383086, 0.1791044776119403, 0.18407960199004975, 0.26533996683250416, 0.20729684908789386, 0.208955223880597, 0.22056384742951907, 0.22885572139303484, 0.23880597014925373, 0.2570480928689884, 0.26533996683250416, 0.30016583747927034, 0.38971807628524047, 0.4560530679933665, 0.5472636815920398, 0.6849087893864013], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Arm.gap.json b/pfam_gap_rates/Arm.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..793630b4a6f09324f450989337af29fabf420493
--- /dev/null
+++ b/pfam_gap_rates/Arm.gap.json
@@ -0,0 +1 @@
+{"family": "Arm", "n_seqs": 5000, "length": 42, "gap_rates": [0.7142, 0.3712, 0.2576, 0.1854, 0.1416, 0.1158, 0.0872, 0.0698, 0.064, 0.056, 0.0382, 0.0414, 0.0088, 0.0024, 0.0012, 0.0006, 0.0006, 0.0004, 0.0002, 0.0002, 0.0, 0.0, 0.7784, 0.0034, 0.0008, 0.0004, 0.0006, 0.0006, 0.0006, 0.0012, 0.0012, 0.002, 0.0024, 0.0032, 0.0048, 0.0052, 0.009, 0.0174, 0.0334, 0.0488, 0.143, 0.6988], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Arm_3.gap.json b/pfam_gap_rates/Arm_3.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..0a1beb0b7c16f2f94de55d045b45488103ac11d9
--- /dev/null
+++ b/pfam_gap_rates/Arm_3.gap.json
@@ -0,0 +1 @@
+{"family": "Arm_3", "n_seqs": 731, "length": 55, "gap_rates": [0.27906976744186046, 0.146374829001368, 0.06429548563611491, 0.047879616963064295, 0.030095759233926128, 0.016415868673050615, 0.016415868673050615, 0.015047879616963064, 0.013679890560875513, 0.013679890560875513, 0.012311901504787962, 0.006839945280437756, 0.005471956224350205, 0.005471956224350205, 0.005471956224350205, 0.004103967168262654, 0.0027359781121751026, 0.0013679890560875513, 0.0013679890560875513, 0.0013679890560875513, 0.0, 0.0, 0.0, 0.0, 0.0013679890560875513, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0027359781121751026, 0.0027359781121751026, 0.004103967168262654, 0.004103967168262654, 0.004103967168262654, 0.005471956224350205, 0.008207934336525308, 0.008207934336525308, 0.019151846785225718, 0.027359781121751026, 0.03146374829001368, 0.09439124487004104, 0.09302325581395349, 0.42954856361149113, 0.9097127222982216, 0.8221614227086184, 0.3036935704514364, 0.3761969904240766, 0.4117647058823529, 0.5088919288645691, 0.5882352941176471, 0.7264021887824897, 0.6497948016415869, 0.8891928864569083], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/AsnC_trans_reg.gap.json b/pfam_gap_rates/AsnC_trans_reg.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c75e808aa2d3e4ea421113c80eba3ff19140cc56
--- /dev/null
+++ b/pfam_gap_rates/AsnC_trans_reg.gap.json
@@ -0,0 +1 @@
+{"family": "AsnC_trans_reg", "n_seqs": 5000, "length": 76, "gap_rates": [0.52, 0.3402, 0.2206, 0.1868, 0.1614, 0.1508, 0.3066, 0.1494, 0.1434, 0.844, 0.4808, 0.4586, 0.3414, 0.0366, 0.0272, 0.0212, 0.0172, 0.0146, 0.0126, 0.0098, 0.008, 0.0072, 0.0058, 0.0048, 0.0036, 0.0042, 0.0028, 0.002, 0.0018, 0.0018, 0.0018, 0.0018, 0.0012, 0.001, 0.0012, 0.001, 0.001, 0.0008, 0.0006, 0.0006, 0.0004, 0.0006, 0.0012, 0.0014, 0.001, 0.0008, 0.0014, 0.0014, 0.0014, 0.0012, 0.0012, 0.0012, 0.0014, 0.0014, 0.0734, 0.0644, 0.0654, 0.2792, 0.008, 0.0102, 0.0124, 0.0134, 0.0356, 0.0318, 0.0138, 0.0316, 0.0152, 0.016, 0.0164, 0.0184, 0.0234, 0.0364, 0.052, 0.0802, 0.1758, 0.637], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Asn_synthase.gap.json b/pfam_gap_rates/Asn_synthase.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..37e8487663bedc654599a9c0437314f8e42d6176
--- /dev/null
+++ b/pfam_gap_rates/Asn_synthase.gap.json
@@ -0,0 +1 @@
+{"family": "Asn_synthase", "n_seqs": 4336, "length": 475, "gap_rates": [0.8699261992619927, 0.46863468634686345, 0.4158210332103321, 0.38191881918819187, 0.3577029520295203, 0.35101476014760147, 0.3489391143911439, 0.34501845018450183, 0.3427121771217712, 0.3413284132841328, 0.3392527675276753, 0.34363468634686345, 0.3378690036900369, 0.33071955719557194, 0.32633763837638374, 0.31595940959409596, 0.3081180811808118, 0.3011992619926199, 0.2845940959409594, 0.2742158671586716, 0.2679889298892989, 0.26014760147601473, 0.2571494464944649, 0.25392066420664205, 0.2518450184501845, 0.25161439114391143, 0.2506918819188192, 0.2506918819188192, 0.2506918819188192, 0.25046125461254615, 0.25046125461254615, 0.25046125461254615, 0.2506918819188192, 0.25092250922509224, 0.2513837638376384, 0.2518450184501845, 0.2523062730627306, 0.2520756457564576, 0.253690036900369, 0.2592250922509225, 0.27744464944649444, 0.3173431734317343, 0.7248616236162362, 0.8025830258302583, 0.8736162361623616, 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\ No newline at end of file
diff --git a/pfam_gap_rates/Asp23.gap.json b/pfam_gap_rates/Asp23.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b611db34826008de0290aef658db458de6d6e824
--- /dev/null
+++ b/pfam_gap_rates/Asp23.gap.json
@@ -0,0 +1 @@
+{"family": "Asp23", "n_seqs": 1661, "length": 112, "gap_rates": [0.3696568332329922, 0.15532811559301626, 0.13245033112582782, 0.11920529801324503, 0.10656231186032511, 0.10114388922335943, 0.10054184226369657, 0.09993979530403371, 0.0975316074653823, 0.09692956050571945, 0.09572546658639373, 0.09391932570740517, 0.09331727874774233, 0.09151113786875377, 0.09030704394942805, 0.0897049969897652, 0.0897049969897652, 0.0897049969897652, 0.0885009030704395, 0.08910295003010235, 0.08729680915111379, 0.08789885611077664, 0.08729680915111379, 0.08669476219145093, 0.08729680915111379, 0.08789885611077664, 0.08609271523178808, 0.08669476219145093, 0.08488862131246237, 0.08428657435279951, 0.10054184226369657, 0.7712221553281156, 0.9072847682119205, 0.5869957856712824, 0.15412402167369055, 0.1366646598434678, 0.12642986152919927, 0.12040939193257075, 0.10234798314268513, 0.10234798314268513, 0.1053582179409994, 0.09933774834437085, 0.09452137266706803, 0.11077664057796509, 0.11137868753762793, 0.9187236604455148, 0.7826610475617098, 0.08428657435279951, 0.07645996387718242, 0.06622516556291391, 0.059000602046959665, 0.055388320288982544, 0.05358217940999398, 0.042745334136062615, 0.03552077062010837, 0.028898254063816978, 0.030704394942805538, 0.05358217940999398, 0.040939193257074055, 0.8091511137868754, 0.026490066225165563, 0.017459361830222758, 0.010234798314268514, 0.010234798314268514, 0.010234798314268514, 0.008428657435279952, 0.007224563515954244, 0.006622516556291391, 0.006622516556291391, 0.007224563515954244, 0.006622516556291391, 0.006020469596628537, 0.005418422636965683, 0.005418422636965683, 0.005418422636965683, 0.005418422636965683, 0.005418422636965683, 0.005418422636965683, 0.005418422636965683, 0.005418422636965683, 0.005418422636965683, 0.005418422636965683, 0.005418422636965683, 0.005418422636965683, 0.005418422636965683, 0.005418422636965683, 0.005418422636965683, 0.005418422636965683, 0.005418422636965683, 0.005418422636965683, 0.005418422636965683, 0.005418422636965683, 0.005418422636965683, 0.006020469596628537, 0.005418422636965683, 0.006622516556291391, 0.006622516556291391, 0.005418422636965683, 0.006020469596628537, 0.005418422636965683, 0.006020469596628537, 0.006622516556291391, 0.005418422636965683, 0.005418422636965683, 0.005418422636965683, 0.005418422636965683, 0.005418422636965683, 0.007826610475617099, 0.01625526791089705, 0.044551475015051176, 0.08910295003010235, 0.5562913907284768], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Autophagy_N.gap.json b/pfam_gap_rates/Autophagy_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..631c9c15c6a31401188e2bdc60ff9b41688d8110
--- /dev/null
+++ b/pfam_gap_rates/Autophagy_N.gap.json
@@ -0,0 +1 @@
+{"family": "Autophagy_N", "n_seqs": 332, "length": 188, "gap_rates": [0.4307228915662651, 0.30120481927710846, 0.19879518072289157, 0.16265060240963855, 0.13855421686746988, 0.13253012048192772, 0.12951807228915663, 0.1144578313253012, 0.10843373493975904, 0.10240963855421686, 0.12349397590361445, 0.09939759036144578, 0.0963855421686747, 0.09036144578313253, 0.08433734939759036, 0.08734939759036145, 0.08132530120481928, 0.07228915662650602, 0.06325301204819277, 0.0572289156626506, 0.060240963855421686, 0.0572289156626506, 0.060240963855421686, 0.05421686746987952, 0.05120481927710843, 0.05120481927710843, 0.04819277108433735, 0.045180722891566265, 0.04216867469879518, 0.04216867469879518, 0.04216867469879518, 0.045180722891566265, 0.045180722891566265, 0.04819277108433735, 0.04819277108433735, 0.04819277108433735, 0.04819277108433735, 0.04819277108433735, 0.04819277108433735, 0.05120481927710843, 0.060240963855421686, 0.060240963855421686, 0.05421686746987952, 0.05421686746987952, 0.05120481927710843, 0.05120481927710843, 0.05120481927710843, 0.05421686746987952, 0.05421686746987952, 0.04819277108433735, 0.045180722891566265, 0.7349397590361446, 0.0783132530120482, 0.045180722891566265, 0.04216867469879518, 0.04216867469879518, 0.0391566265060241, 0.04216867469879518, 0.04216867469879518, 0.04819277108433735, 0.045180722891566265, 0.045180722891566265, 0.04819277108433735, 0.04216867469879518, 0.0391566265060241, 0.0391566265060241, 0.0391566265060241, 0.03614457831325301, 0.03614457831325301, 0.03614457831325301, 0.04216867469879518, 0.03313253012048193, 0.04216867469879518, 0.045180722891566265, 0.045180722891566265, 0.04819277108433735, 0.045180722891566265, 0.045180722891566265, 0.045180722891566265, 0.045180722891566265, 0.045180722891566265, 0.045180722891566265, 0.7439759036144579, 0.8403614457831325, 0.858433734939759, 0.8795180722891566, 0.9066265060240963, 0.9367469879518072, 0.9487951807228916, 0.9427710843373494, 0.9126506024096386, 0.9036144578313253, 0.8644578313253012, 0.8554216867469879, 0.8313253012048193, 0.5602409638554217, 0.045180722891566265, 0.47289156626506024, 0.18373493975903615, 0.16566265060240964, 0.1746987951807229, 0.1686746987951807, 0.16566265060240964, 0.13855421686746988, 0.1566265060240964, 0.21686746987951808, 0.19879518072289157, 0.14457831325301204, 0.3132530120481928, 0.6295180722891566, 0.7078313253012049, 0.7168674698795181, 0.822289156626506, 0.8885542168674698, 0.9307228915662651, 0.8704819277108434, 0.7801204819277109, 0.7108433734939759, 0.6656626506024096, 0.5602409638554217, 0.2710843373493976, 0.06927710843373494, 0.06626506024096386, 0.060240963855421686, 0.060240963855421686, 0.060240963855421686, 0.060240963855421686, 0.060240963855421686, 0.060240963855421686, 0.060240963855421686, 0.06325301204819277, 0.08734939759036145, 0.09036144578313253, 0.09036144578313253, 0.1716867469879518, 0.18373493975903615, 0.1716867469879518, 0.13855421686746988, 0.35542168674698793, 0.6596385542168675, 0.786144578313253, 0.8493975903614458, 0.9036144578313253, 0.9367469879518072, 0.9487951807228916, 0.9457831325301205, 0.9216867469879518, 0.8885542168674698, 0.8102409638554217, 0.7228915662650602, 0.5783132530120482, 0.2710843373493976, 0.1355421686746988, 0.21987951807228914, 0.22289156626506024, 0.22590361445783133, 0.21686746987951808, 0.21385542168674698, 0.21987951807228914, 0.21987951807228914, 0.2289156626506024, 0.24397590361445784, 0.2560240963855422, 0.2740963855421687, 0.30120481927710846, 0.31626506024096385, 0.34036144578313254, 0.35843373493975905, 0.39156626506024095, 0.4186746987951807, 0.44879518072289154, 0.6024096385542169, 0.7018072289156626, 0.858433734939759, 0.9307228915662651, 0.9397590361445783, 0.9156626506024096, 0.7680722891566265, 0.6325301204819277, 0.5783132530120482, 0.5030120481927711, 0.6837349397590361, 0.6746987951807228, 0.6837349397590361, 0.6265060240963856, 0.7048192771084337, 0.7469879518072289, 0.9096385542168675], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/B-block_TFIIIC.gap.json b/pfam_gap_rates/B-block_TFIIIC.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..22b0e45faa1627c31cdf99361ddce8fdbd802ca7
--- /dev/null
+++ b/pfam_gap_rates/B-block_TFIIIC.gap.json
@@ -0,0 +1 @@
+{"family": "B-block_TFIIIC", "n_seqs": 271, "length": 88, "gap_rates": [0.5977859778597786, 0.28413284132841327, 0.18450184501845018, 0.11808118081180811, 0.1033210332103321, 0.07011070110701106, 0.055350553505535055, 0.05166051660516605, 0.05166051660516605, 0.05166051660516605, 0.055350553505535055, 0.04059040590405904, 0.02952029520295203, 0.02214022140221402, 0.01845018450184502, 0.014760147601476014, 0.01107011070110701, 0.01107011070110701, 0.01107011070110701, 0.01107011070110701, 0.01107011070110701, 0.01107011070110701, 0.01107011070110701, 0.01107011070110701, 0.9077490774907749, 0.014760147601476014, 0.014760147601476014, 0.014760147601476014, 0.01107011070110701, 0.9446494464944649, 0.9188191881918819, 0.0036900369003690036, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0036900369003690036, 0.0036900369003690036, 0.0, 0.0, 0.0, 0.0, 0.025830258302583026, 0.025830258302583026, 0.0, 0.0036900369003690036, 0.0036900369003690036, 0.0036900369003690036, 0.0036900369003690036, 0.01845018450184502, 0.02214022140221402, 0.5535055350553506, 0.7269372693726938, 0.7896678966789668, 0.7970479704797048, 0.8191881918819188, 0.8302583025830258, 0.8819188191881919, 0.8745387453874539, 0.8228782287822878, 0.8154981549815498, 0.7970479704797048, 0.7749077490774908, 0.6273062730627307, 0.5424354243542435, 0.5202952029520295, 0.5166051660516605, 0.15498154981549817, 0.14391143911439114, 0.0996309963099631, 0.0996309963099631, 0.0959409594095941, 0.0996309963099631, 0.0996309963099631, 0.1070110701107011, 0.11070110701107011, 0.11808118081180811, 0.14022140221402213, 0.15129151291512916, 0.15498154981549817, 0.17343173431734318, 0.1881918819188192, 0.25461254612546125, 0.45387453874538747], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/BAR_3.gap.json b/pfam_gap_rates/BAR_3.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..bc4e48c61418afc63fa6c1ab60d955dfdfa353c9
--- /dev/null
+++ b/pfam_gap_rates/BAR_3.gap.json
@@ -0,0 +1 @@
+{"family": "BAR_3", "n_seqs": 844, "length": 253, "gap_rates": [0.7393364928909952, 0.70260663507109, 0.6386255924170616, 0.6232227488151659, 0.6161137440758294, 0.5876777251184834, 0.46208530805687204, 0.40639810426540285, 0.4040284360189573, 0.4004739336492891, 0.3815165876777251, 0.3637440758293839, 0.3447867298578199, 0.31398104265402843, 0.3068720379146919, 0.2914691943127962, 0.2843601895734597, 0.28199052132701424, 0.2772511848341232, 0.27488151658767773, 0.2713270142180095, 0.26421800947867297, 0.2559241706161137, 0.2476303317535545, 0.24407582938388625, 0.24052132701421802, 0.24052132701421802, 0.23459715639810427, 0.22748815165876776, 0.22274881516587677, 0.2132701421800948, 0.20734597156398105, 0.20260663507109006, 0.19786729857819904, 0.19786729857819904, 0.1943127962085308, 0.1943127962085308, 0.19194312796208532, 0.19194312796208532, 0.19194312796208532, 0.1895734597156398, 0.1895734597156398, 0.1895734597156398, 0.1872037914691943, 0.18364928909952608, 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\ No newline at end of file
diff --git a/pfam_gap_rates/BET.gap.json b/pfam_gap_rates/BET.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..9c37cf5fa2ffd05b6a32a862b3a33b343b9df6d4
--- /dev/null
+++ b/pfam_gap_rates/BET.gap.json
@@ -0,0 +1 @@
+{"family": "BET", "n_seqs": 761, "length": 69, "gap_rates": [0.5611038107752957, 0.17608409986859397, 0.14191852825229961, 0.1287779237844941, 0.11957950065703023, 0.1116951379763469, 0.11038107752956636, 0.08015768725361366, 0.03416557161629435, 0.024967148488830485, 0.024967148488830485, 0.023653088042049936, 0.023653088042049936, 0.022339027595269383, 0.01576872536136662, 0.01576872536136662, 0.01445466491458607, 0.02102496714848883, 0.01445466491458607, 0.013140604467805518, 0.011826544021024968, 0.010512483574244415, 0.009198423127463863, 0.00788436268068331, 0.00788436268068331, 0.009198423127463863, 0.006570302233902759, 0.006570302233902759, 0.006570302233902759, 0.006570302233902759, 0.00788436268068331, 0.00788436268068331, 0.00788436268068331, 0.8607095926412615, 0.9316688567674113, 0.7700394218134035, 0.040735873850197106, 0.08147174770039421, 0.13534822601839686, 0.1392904073587385, 0.9329829172141918, 0.5440210249671484, 0.02102496714848883, 0.009198423127463863, 0.009198423127463863, 0.009198423127463863, 0.009198423127463863, 0.010512483574244415, 0.010512483574244415, 0.009198423127463863, 0.009198423127463863, 0.009198423127463863, 0.010512483574244415, 0.011826544021024968, 0.01445466491458607, 0.017082785808147174, 0.018396846254927726, 0.01971090670170828, 0.02102496714848883, 0.02102496714848883, 0.02102496714848883, 0.022339027595269383, 0.022339027595269383, 0.023653088042049936, 0.030223390275952694, 0.030223390275952694, 0.04204993429697766, 0.15505913272010513, 0.7766097240473062], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/BP28CT.gap.json b/pfam_gap_rates/BP28CT.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..7168067a12b769304ef997e7996f6debb686aa2b
--- /dev/null
+++ b/pfam_gap_rates/BP28CT.gap.json
@@ -0,0 +1 @@
+{"family": "BP28CT", "n_seqs": 277, "length": 199, "gap_rates": [0.51985559566787, 0.30685920577617326, 0.20938628158844766, 0.148014440433213, 0.1299638989169675, 0.11913357400722022, 0.09747292418772563, 0.09747292418772563, 0.08664259927797834, 0.07942238267148015, 0.07942238267148015, 0.07942238267148015, 0.07942238267148015, 0.07942238267148015, 0.07942238267148015, 0.07942238267148015, 0.07942238267148015, 0.07942238267148015, 0.07581227436823104, 0.09386281588447654, 0.10108303249097472, 0.11913357400722022, 0.11913357400722022, 0.1371841155234657, 0.15162454873646208, 0.1588447653429603, 0.37906137184115524, 0.6137184115523465, 0.7003610108303249, 0.7906137184115524, 0.9422382671480144, 0.7581227436823105, 0.6714801444043321, 0.5018050541516246, 0.07220216606498195, 0.05776173285198556, 0.05776173285198556, 0.04693140794223827, 0.04332129963898917, 0.04332129963898917, 0.039711191335740074, 0.039711191335740074, 0.039711191335740074, 0.032490974729241874, 0.032490974729241874, 0.032490974729241874, 0.032490974729241874, 0.032490974729241874, 0.032490974729241874, 0.032490974729241874, 0.032490974729241874, 0.032490974729241874, 0.032490974729241874, 0.032490974729241874, 0.032490974729241874, 0.032490974729241874, 0.032490974729241874, 0.032490974729241874, 0.032490974729241874, 0.032490974729241874, 0.032490974729241874, 0.032490974729241874, 0.02888086642599278, 0.02888086642599278, 0.02888086642599278, 0.02888086642599278, 0.02527075812274368, 0.02527075812274368, 0.02527075812274368, 0.021660649819494584, 0.021660649819494584, 0.7256317689530686, 0.8592057761732852, 0.9494584837545126, 0.927797833935018, 0.8267148014440433, 0.6931407942238267, 0.27075812274368233, 0.37184115523465705, 0.4151624548736462, 0.38267148014440433, 0.3140794223826715, 0.16606498194945848, 0.11191335740072202, 0.10108303249097472, 0.09025270758122744, 0.09025270758122744, 0.032490974729241874, 0.628158844765343, 0.927797833935018, 0.6714801444043321, 0.6101083032490975, 0.032490974729241874, 0.032490974729241874, 0.032490974729241874, 0.032490974729241874, 0.032490974729241874, 0.032490974729241874, 0.02888086642599278, 0.032490974729241874, 0.02888086642599278, 0.02888086642599278, 0.02527075812274368, 0.021660649819494584, 0.021660649819494584, 0.021660649819494584, 0.021660649819494584, 0.021660649819494584, 0.021660649819494584, 0.021660649819494584, 0.018050541516245487, 0.018050541516245487, 0.018050541516245487, 0.018050541516245487, 0.018050541516245487, 0.018050541516245487, 0.021660649819494584, 0.021660649819494584, 0.021660649819494584, 0.021660649819494584, 0.021660649819494584, 0.021660649819494584, 0.021660649819494584, 0.021660649819494584, 0.02527075812274368, 0.02527075812274368, 0.02527075812274368, 0.02527075812274368, 0.036101083032490974, 0.036101083032490974, 0.032490974729241874, 0.8158844765342961, 0.8158844765342961, 0.8844765342960289, 0.9422382671480144, 0.9025270758122743, 0.8447653429602888, 0.8158844765342961, 0.8122743682310469, 0.04332129963898917, 0.21299638989169675, 0.17689530685920576, 0.9494584837545126, 0.18411552346570398, 0.19133574007220217, 0.19855595667870035, 0.2490974729241877, 0.23826714801444043, 0.04693140794223827, 0.5234657039711191, 0.5379061371841155, 0.555956678700361, 0.5703971119133574, 0.592057761732852, 0.6101083032490975, 0.7075812274368231, 0.7256317689530686, 0.7725631768953068, 0.7942238267148014, 0.8339350180505415, 0.855595667870036, 0.9061371841155235, 0.9350180505415162, 0.9494584837545126, 0.9422382671480144, 0.9097472924187726, 0.8916967509025271, 0.8483754512635379, 0.7978339350180506, 0.779783393501805, 0.740072202166065, 0.7220216606498195, 0.6823104693140795, 0.5992779783393501, 0.5848375451263538, 0.5631768953068592, 0.555956678700361, 0.5306859205776173, 0.5090252707581228, 0.04693140794223827, 0.05415162454873646, 0.05415162454873646, 0.05415162454873646, 0.05415162454873646, 0.05415162454873646, 0.05415162454873646, 0.05415162454873646, 0.05415162454873646, 0.05415162454873646, 0.05415162454873646, 0.05415162454873646, 0.061371841155234655, 0.06498194945848375, 0.08664259927797834, 0.11552346570397112, 0.11913357400722022, 0.1299638989169675, 0.259927797833935, 0.3176895306859206], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/BPD_transp_1.gap.json b/pfam_gap_rates/BPD_transp_1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..fa1804b720321cb6ce689b017f7cf0481ddfdfa2
--- /dev/null
+++ b/pfam_gap_rates/BPD_transp_1.gap.json
@@ -0,0 +1 @@
+{"family": "BPD_transp_1", "n_seqs": 5000, "length": 238, "gap_rates": [0.6616, 0.4088, 0.2788, 0.2176, 0.1778, 0.1604, 0.1494, 0.1402, 0.1184, 0.5684, 0.9188, 0.6864, 0.5374, 0.3534, 0.1644, 0.0854, 0.0802, 0.0732, 0.0652, 0.0596, 0.0566, 0.0538, 0.0492, 0.0464, 0.0422, 0.039, 0.0368, 0.0356, 0.0346, 0.0368, 0.0314, 0.0308, 0.031, 0.0306, 0.0304, 0.0296, 0.0288, 0.0276, 0.9434, 0.933, 0.031, 0.0436, 0.042, 0.0432, 0.0464, 0.0468, 0.3226, 0.346, 0.3268, 0.4942, 0.5258, 0.5564, 0.577, 0.6202, 0.6616, 0.6944, 0.7142, 0.7612, 0.829, 0.8894, 0.9204, 0.9426, 0.9324, 0.9074, 0.8566, 0.7902, 0.7332, 0.705, 0.6836, 0.6318, 0.589, 0.5702, 0.5394, 0.514, 0.4726, 0.2654, 0.239, 0.2252, 0.0508, 0.0176, 0.0122, 0.0134, 0.927, 0.018, 0.0094, 0.0078, 0.0078, 0.009, 0.8226, 0.007, 0.0058, 0.007, 0.0064, 0.0068, 0.0068, 0.007, 0.0062, 0.0064, 0.0064, 0.0058, 0.0062, 0.0058, 0.0052, 0.0046, 0.0038, 0.0044, 0.004, 0.0036, 0.0036, 0.0036, 0.004, 0.0038, 0.0034, 0.003, 0.003, 0.0028, 0.0028, 0.0036, 0.0026, 0.0026, 0.0026, 0.0028, 0.0028, 0.0024, 0.0022, 0.0022, 0.002, 0.0022, 0.0022, 0.0024, 0.0066, 0.0026, 0.0028, 0.0074, 0.003, 0.003, 0.0032, 0.0034, 0.003, 0.003, 0.003, 0.0036, 0.0038, 0.0038, 0.0034, 0.0036, 0.0034, 0.0034, 0.0034, 0.0034, 0.0038, 0.004, 0.004, 0.004, 0.0044, 0.0042, 0.0046, 0.0054, 0.0052, 0.0056, 0.0068, 0.0066, 0.0066, 0.0062, 0.0058, 0.0066, 0.3072, 0.2846, 0.3544, 0.324, 0.8152, 0.9002, 0.9168, 0.8556, 0.7712, 0.058, 0.0336, 0.0352, 0.0236, 0.0202, 0.019, 0.0182, 0.0196, 0.0202, 0.019, 0.0194, 0.0196, 0.0202, 0.0232, 0.0278, 0.0964, 0.1004, 0.0872, 0.571, 0.6954, 0.7802, 0.8156, 0.8368, 0.9182, 0.943, 0.9492, 0.9318, 0.901, 0.8266, 0.8006, 0.7492, 0.6448, 0.5368, 0.3758, 0.1198, 0.0522, 0.0418, 0.0318, 0.0164, 0.0138, 0.014, 0.014, 0.014, 0.0152, 0.0178, 0.023, 0.0322, 0.045, 0.0544, 0.0672, 0.0882, 0.1174, 0.1436, 0.1706, 0.2248, 0.2762, 0.3116, 0.3452, 0.3972, 0.4372, 0.4986, 0.6074, 0.7784], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/BRCA2.gap.json b/pfam_gap_rates/BRCA2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ba8b4833736a05458aafb4e332d4ce11f6898ea3
--- /dev/null
+++ b/pfam_gap_rates/BRCA2.gap.json
@@ -0,0 +1 @@
+{"family": "BRCA2", "n_seqs": 543, "length": 33, "gap_rates": [0.9318600368324125, 0.8268876611418048, 0.716390423572744, 0.5046040515653776, 0.35174953959484345, 0.10681399631675875, 0.009208103130755065, 0.0055248618784530384, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.001841620626151013, 0.001841620626151013, 0.003683241252302026, 0.01289134438305709, 0.03683241252302026, 0.09023941068139964, 0.12154696132596685, 0.18968692449355432, 0.24125230202578268, 0.5432780847145487, 0.7532228360957642], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/BRICHOS.gap.json b/pfam_gap_rates/BRICHOS.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..acae4fa76abfed8d9127a83bd6de14047a93764e
--- /dev/null
+++ b/pfam_gap_rates/BRICHOS.gap.json
@@ -0,0 +1 @@
+{"family": "BRICHOS", "n_seqs": 239, "length": 112, "gap_rates": [0.8284518828451883, 0.3598326359832636, 0.14644351464435146, 0.08786610878661087, 0.0502092050209205, 0.029288702928870293, 0.029288702928870293, 0.029288702928870293, 0.029288702928870293, 0.029288702928870293, 0.02092050209205021, 0.02092050209205021, 0.016736401673640166, 0.016736401673640166, 0.016736401673640166, 0.016736401673640166, 0.016736401673640166, 0.016736401673640166, 0.016736401673640166, 0.016736401673640166, 0.012552301255230125, 0.016736401673640166, 0.012552301255230125, 0.008368200836820083, 0.008368200836820083, 0.008368200836820083, 0.008368200836820083, 0.008368200836820083, 0.008368200836820083, 0.008368200836820083, 0.0041841004184100415, 0.0041841004184100415, 0.0041841004184100415, 0.0041841004184100415, 0.0502092050209205, 0.008368200836820083, 0.008368200836820083, 0.012552301255230125, 0.012552301255230125, 0.008368200836820083, 0.012552301255230125, 0.02092050209205021, 0.02092050209205021, 0.012552301255230125, 0.008368200836820083, 0.008368200836820083, 0.016736401673640166, 0.02510460251046025, 0.5313807531380753, 0.5983263598326359, 0.6861924686192469, 0.8368200836820083, 0.9372384937238494, 0.8828451882845189, 0.7238493723849372, 0.6192468619246861, 0.5857740585774058, 0.49372384937238495, 0.4811715481171548, 0.6485355648535565, 0.6359832635983264, 0.4895397489539749, 0.7322175732217573, 0.799163179916318, 0.6778242677824268, 0.13389121338912133, 0.13807531380753138, 0.16317991631799164, 0.2175732217573222, 0.13807531380753138, 0.1297071129707113, 0.11715481171548117, 0.12133891213389121, 0.1087866108786611, 0.100418410041841, 0.100418410041841, 0.1799163179916318, 0.17154811715481172, 0.16317991631799164, 0.5230125523012552, 0.5313807531380753, 0.5523012552301255, 0.5732217573221757, 0.5815899581589958, 0.9246861924686193, 0.7866108786610879, 0.5774058577405857, 0.5648535564853556, 0.5355648535564853, 0.5271966527196653, 0.5230125523012552, 0.09205020920502092, 0.09205020920502092, 0.09205020920502092, 0.09205020920502092, 0.09205020920502092, 0.8493723849372385, 0.09205020920502092, 0.09205020920502092, 0.09205020920502092, 0.09205020920502092, 0.09205020920502092, 0.09205020920502092, 0.09205020920502092, 0.09205020920502092, 0.09205020920502092, 0.09205020920502092, 0.09623430962343096, 0.100418410041841, 0.10460251046025104, 0.12133891213389121, 0.41841004184100417], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/BRX_N.gap.json b/pfam_gap_rates/BRX_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..6019d31b36df5d523e1b8443859a974501d79ad1
--- /dev/null
+++ b/pfam_gap_rates/BRX_N.gap.json
@@ -0,0 +1 @@
+{"family": "BRX_N", "n_seqs": 269, "length": 37, "gap_rates": [0.3903345724907063, 0.30111524163568776, 0.26394052044609667, 0.20446096654275092, 0.1821561338289963, 0.11524163568773234, 0.10408921933085502, 0.08550185873605948, 0.07434944237918216, 0.06319702602230483, 0.03717472118959108, 0.03345724907063197, 0.01486988847583643, 0.0037174721189591076, 0.0037174721189591076, 0.0037174721189591076, 0.0037174721189591076, 0.0037174721189591076, 0.0037174721189591076, 0.02973977695167286, 0.02973977695167286, 0.026022304832713755, 0.026022304832713755, 0.02973977695167286, 0.02973977695167286, 0.03345724907063197, 0.048327137546468404, 0.04460966542750929, 0.07063197026022305, 0.09293680297397769, 0.15613382899628253, 0.2379182156133829, 0.2788104089219331, 0.31970260223048325, 0.38661710037174724, 0.5390334572490706, 0.7843866171003717], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/BSD.gap.json b/pfam_gap_rates/BSD.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..21dbb13f252c70199bf8525600330cce760d7475
--- /dev/null
+++ b/pfam_gap_rates/BSD.gap.json
@@ -0,0 +1 @@
+{"family": "BSD", "n_seqs": 1001, "length": 66, "gap_rates": [0.7672327672327672, 0.5944055944055944, 0.44555444555444557, 0.33766233766233766, 0.2757242757242757, 0.23776223776223776, 0.35064935064935066, 0.2827172827172827, 0.6723276723276723, 0.15684315684315683, 0.13986013986013987, 0.12887112887112886, 0.10989010989010989, 0.1008991008991009, 0.0939060939060939, 0.08391608391608392, 0.07392607392607392, 0.06393606393606394, 0.054945054945054944, 0.04495504495504495, 0.3106893106893107, 0.03496503496503497, 0.028971028971028972, 0.017982017982017984, 0.012987012987012988, 0.011988011988011988, 0.01098901098901099, 0.00999000999000999, 0.007992007992007992, 0.007992007992007992, 0.005994005994005994, 0.004995004995004995, 0.929070929070929, 0.9330669330669331, 0.9330669330669331, 0.935064935064935, 0.9330669330669331, 0.932067932067932, 0.9010989010989011, 0.003996003996003996, 0.003996003996003996, 0.003996003996003996, 0.08791208791208792, 0.003996003996003996, 0.004995004995004995, 0.003996003996003996, 0.003996003996003996, 0.001998001998001998, 0.001998001998001998, 0.002997002997002997, 0.003996003996003996, 0.008991008991008992, 0.01098901098901099, 0.012987012987012988, 0.013986013986013986, 0.016983016983016984, 0.03196803196803197, 0.055944055944055944, 0.06993006993006994, 0.11688311688311688, 0.14385614385614387, 0.1958041958041958, 0.22577422577422576, 0.4015984015984016, 0.5134865134865135, 0.7722277722277723], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Bac_DnaA_C.gap.json b/pfam_gap_rates/Bac_DnaA_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..7eabccb1152ac3a53216b3d2b8dc238d91446879
--- /dev/null
+++ b/pfam_gap_rates/Bac_DnaA_C.gap.json
@@ -0,0 +1 @@
+{"family": "Bac_DnaA_C", "n_seqs": 2374, "length": 69, "gap_rates": [0.5240101095197978, 0.22493681550126368, 0.05433866891322662, 0.030749789385004212, 0.020640269587194608, 0.016427969671440605, 0.014743049705139006, 0.012215669755686605, 0.011373209772535805, 0.011373209772535805, 0.010951979780960405, 0.009688289806234204, 0.008424599831508003, 0.008424599831508003, 0.008003369839932602, 0.008003369839932602, 0.006739679865206402, 0.006739679865206402, 0.005897219882055603, 0.005897219882055603, 0.006318449873631003, 0.005054759898904802, 0.009267059814658803, 0.005897219882055603, 0.004633529907329402, 0.008003369839932602, 0.005054759898904802, 0.006318449873631003, 0.0037910699241786015, 0.003369839932603201, 0.0021061499578770007, 0.0021061499578770007, 0.0021061499578770007, 0.0016849199663016006, 0.0021061499578770007, 0.0008424599831508003, 0.0008424599831508003, 0.0008424599831508003, 0.0008424599831508003, 0.0008424599831508003, 0.0008424599831508003, 0.0008424599831508003, 0.007582139848357203, 0.0008424599831508003, 0.0012636899747262005, 0.0012636899747262005, 0.0012636899747262005, 0.0012636899747262005, 0.0012636899747262005, 0.0012636899747262005, 0.0012636899747262005, 0.0012636899747262005, 0.0021061499578770007, 0.002527379949452401, 0.13774220724515585, 0.005897219882055603, 0.006318449873631003, 0.006739679865206402, 0.008845829823083403, 0.008845829823083403, 0.010530749789385004, 0.012215669755686605, 0.015585509688289806, 0.016006739679865205, 0.019376579612468407, 0.02316764953664701, 0.03285593934288121, 0.07455770850884583, 0.12973883740522324], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Bac_rhamnosid.gap.json b/pfam_gap_rates/Bac_rhamnosid.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..9541efd08e4c28c8a1810513f5b51223de238829
--- /dev/null
+++ b/pfam_gap_rates/Bac_rhamnosid.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Bet_v_1.gap.json b/pfam_gap_rates/Bet_v_1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..3b0730b8407dd62fc538c7a57861b1333584c3d7
--- /dev/null
+++ b/pfam_gap_rates/Bet_v_1.gap.json
@@ -0,0 +1 @@
+{"family": "Bet_v_1", "n_seqs": 668, "length": 162, "gap_rates": [0.6541916167664671, 0.531437125748503, 0.4116766467065868, 0.2934131736526946, 0.25, 0.2215568862275449, 0.20059880239520958, 0.18413173652694612, 0.16766467065868262, 0.16167664670658682, 0.15269461077844312, 0.14520958083832336, 0.14221556886227546, 0.13622754491017963, 0.13323353293413173, 0.13023952095808383, 0.12425149700598802, 0.12425149700598802, 0.11976047904191617, 0.11826347305389222, 0.11826347305389222, 0.11676646706586827, 0.11676646706586827, 0.11676646706586827, 0.15119760479041916, 0.9461077844311377, 0.5583832335329342, 0.1122754491017964, 0.10029940119760479, 0.09131736526946108, 0.09131736526946108, 0.08982035928143713, 0.08832335329341318, 0.08832335329341318, 0.08832335329341318, 0.08832335329341318, 0.1721556886227545, 0.1317365269461078, 0.1122754491017964, 0.09580838323353294, 0.09580838323353294, 0.08383233532934131, 0.08233532934131736, 0.08083832335329341, 0.07934131736526946, 0.11526946107784432, 0.08083832335329341, 0.08083832335329341, 0.08532934131736528, 0.08532934131736528, 0.08383233532934131, 0.38922155688622756, 0.12275449101796407, 0.25299401197604793, 0.08982035928143713, 0.08532934131736528, 0.08532934131736528, 0.08682634730538923, 0.08832335329341318, 0.08532934131736528, 0.08532934131736528, 0.08532934131736528, 0.09131736526946108, 0.09730538922155689, 0.10329341317365269, 0.10479041916167664, 0.9326347305389222, 0.10329341317365269, 0.1062874251497006, 0.08383233532934131, 0.07634730538922156, 0.0748502994011976, 0.07335329341317365, 0.0688622754491018, 0.06736526946107785, 0.0718562874251497, 0.06736526946107785, 0.06736526946107785, 0.06437125748502993, 0.06287425149700598, 0.061377245508982034, 0.19161676646706588, 0.06736526946107785, 0.06287425149700598, 0.061377245508982034, 0.058383233532934134, 0.058383233532934134, 0.05389221556886228, 0.05239520958083832, 0.05389221556886228, 0.05389221556886228, 0.058383233532934134, 0.06287425149700598, 0.06736526946107785, 0.07784431137724551, 0.06437125748502993, 0.8982035928143712, 0.0658682634730539, 0.9431137724550899, 0.0658682634730539, 0.06287425149700598, 0.06287425149700598, 0.0658682634730539, 0.06736526946107785, 0.0718562874251497, 0.0718562874251497, 0.0688622754491018, 0.0688622754491018, 0.07634730538922156, 0.08982035928143713, 0.812874251497006, 0.09431137724550898, 0.08832335329341318, 0.09431137724550898, 0.08532934131736528, 0.08532934131736528, 0.23203592814371257, 0.8817365269461078, 0.08233532934131736, 0.0748502994011976, 0.07335329341317365, 0.0748502994011976, 0.07335329341317365, 0.0748502994011976, 0.07634730538922156, 0.07634730538922156, 0.07784431137724551, 0.07934131736526946, 0.08832335329341318, 0.08083832335329341, 0.08383233532934131, 0.08832335329341318, 0.09580838323353294, 0.10179640718562874, 0.32335329341317365, 0.11826347305389222, 0.12125748502994012, 0.12425149700598802, 0.12724550898203593, 0.13023952095808383, 0.1407185628742515, 0.14520958083832336, 0.14820359281437126, 0.688622754491018, 0.7829341317365269, 0.7215568862275449, 0.6826347305389222, 0.1631736526946108, 0.16766467065868262, 0.1691616766467066, 0.1721556886227545, 0.17365269461077845, 0.1781437125748503, 0.17664670658682635, 0.17964071856287425, 0.17964071856287425, 0.18413173652694612, 0.19011976047904192, 0.2440119760479042, 0.3083832335329341, 0.3772455089820359, 0.7290419161676647], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/BetaGal_dom3.gap.json b/pfam_gap_rates/BetaGal_dom3.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..33ac3a681e590f0a23f19c15d2f1e559a94fda50
--- /dev/null
+++ b/pfam_gap_rates/BetaGal_dom3.gap.json
@@ -0,0 +1 @@
+{"family": "BetaGal_dom3", "n_seqs": 220, "length": 94, "gap_rates": [0.43636363636363634, 0.41818181818181815, 0.4090909090909091, 0.4090909090909091, 0.40454545454545454, 0.65, 0.6, 0.5409090909090909, 0.37727272727272726, 0.37727272727272726, 0.37272727272727274, 0.2909090909090909, 0.6409090909090909, 0.6454545454545455, 0.7636363636363637, 0.85, 0.9363636363636364, 0.95, 0.8818181818181818, 0.8, 0.6954545454545454, 0.6454545454545455, 0.6363636363636364, 0.2, 0.15, 0.1409090909090909, 0.40454545454545454, 0.02727272727272727, 0.01818181818181818, 0.01818181818181818, 0.013636363636363636, 0.004545454545454545, 0.004545454545454545, 0.004545454545454545, 0.004545454545454545, 0.004545454545454545, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.8818181818181818, 0.8409090909090909, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.9227272727272727, 0.0, 0.0, 0.0, 0.004545454545454545, 0.0, 0.0, 0.0, 0.0, 0.9136363636363637, 0.6590909090909091, 0.0, 0.004545454545454545, 0.9136363636363637, 0.05454545454545454, 0.01818181818181818, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.004545454545454545, 0.00909090909090909, 0.013636363636363636, 0.013636363636363636, 0.013636363636363636, 0.01818181818181818, 0.03636363636363636, 0.08636363636363636, 0.11818181818181818, 0.15, 0.18181818181818182, 0.22727272727272727, 0.2409090909090909, 0.2909090909090909, 0.35454545454545455, 0.9318181818181818], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Biotin_lipoyl.gap.json b/pfam_gap_rates/Biotin_lipoyl.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..903d708659cef7c26a60c2e4b067a4113ef1be2f
--- /dev/null
+++ b/pfam_gap_rates/Biotin_lipoyl.gap.json
@@ -0,0 +1 @@
+{"family": "Biotin_lipoyl", "n_seqs": 5000, "length": 75, "gap_rates": [0.4638, 0.2218, 0.1904, 0.1384, 0.1298, 0.1188, 0.1034, 0.0972, 0.095, 0.0982, 0.0912, 0.08, 0.3696, 0.3244, 0.8654, 0.4012, 0.2912, 0.284, 0.28, 0.0108, 0.0082, 0.0062, 0.005, 0.005, 0.0046, 0.0044, 0.0038, 0.0028, 0.0024, 0.0024, 0.0018, 0.0016, 0.0016, 0.0016, 0.0014, 0.0012, 0.001, 0.0008, 0.0006, 0.0008, 0.0008, 0.0006, 0.0008, 0.0008, 0.0014, 0.0022, 0.002, 0.002, 0.0024, 0.0026, 0.0028, 0.0028, 0.0036, 0.0042, 0.0082, 0.0162, 0.0094, 0.0072, 0.0066, 0.0088, 0.0516, 0.009, 0.0106, 0.0114, 0.917, 0.0112, 0.0122, 0.0136, 0.0146, 0.0156, 0.0178, 0.0188, 0.0242, 0.1102, 0.3666], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/BtrH_N.gap.json b/pfam_gap_rates/BtrH_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ba0d1225d85482ef48bf63d3b42f9763cb35d0ba
--- /dev/null
+++ b/pfam_gap_rates/BtrH_N.gap.json
@@ -0,0 +1 @@
+{"family": "BtrH_N", "n_seqs": 165, "length": 145, "gap_rates": [0.28484848484848485, 0.19393939393939394, 0.18787878787878787, 0.18787878787878787, 0.17575757575757575, 0.17575757575757575, 0.16363636363636364, 0.16363636363636364, 0.15757575757575756, 0.14545454545454545, 0.13333333333333333, 0.13333333333333333, 0.13333333333333333, 0.1393939393939394, 0.1393939393939394, 0.16363636363636364, 0.16363636363636364, 0.8787878787878788, 0.15151515151515152, 0.8545454545454545, 0.8545454545454545, 0.9454545454545454, 0.8545454545454545, 0.8545454545454545, 0.13333333333333333, 0.12727272727272726, 0.12121212121212122, 0.10909090909090909, 0.10909090909090909, 0.10909090909090909, 0.13333333333333333, 0.10909090909090909, 0.10909090909090909, 0.09696969696969697, 0.09696969696969697, 0.09696969696969697, 0.09696969696969697, 0.09090909090909091, 0.09090909090909091, 0.09090909090909091, 0.09090909090909091, 0.09090909090909091, 0.9272727272727272, 0.9272727272727272, 0.8848484848484849, 0.16363636363636364, 0.13333333333333333, 0.10909090909090909, 0.10303030303030303, 0.12121212121212122, 0.2545454545454545, 0.10303030303030303, 0.07272727272727272, 0.06666666666666667, 0.06666666666666667, 0.06666666666666667, 0.06060606060606061, 0.07272727272727272, 0.07272727272727272, 0.07272727272727272, 0.9393939393939394, 0.3393939393939394, 0.3212121212121212, 0.07272727272727272, 0.06060606060606061, 0.05454545454545454, 0.048484848484848485, 0.048484848484848485, 0.048484848484848485, 0.048484848484848485, 0.04242424242424243, 0.04242424242424243, 0.04242424242424243, 0.04242424242424243, 0.04242424242424243, 0.04242424242424243, 0.04242424242424243, 0.03636363636363636, 0.04242424242424243, 0.08484848484848485, 0.07272727272727272, 0.048484848484848485, 0.04242424242424243, 0.048484848484848485, 0.04242424242424243, 0.04242424242424243, 0.05454545454545454, 0.04242424242424243, 0.03636363636363636, 0.03636363636363636, 0.030303030303030304, 0.030303030303030304, 0.030303030303030304, 0.030303030303030304, 0.030303030303030304, 0.030303030303030304, 0.030303030303030304, 0.030303030303030304, 0.030303030303030304, 0.030303030303030304, 0.030303030303030304, 0.030303030303030304, 0.024242424242424242, 0.024242424242424242, 0.9454545454545454, 0.030303030303030304, 0.024242424242424242, 0.030303030303030304, 0.03636363636363636, 0.030303030303030304, 0.030303030303030304, 0.030303030303030304, 0.030303030303030304, 0.03636363636363636, 0.03636363636363636, 0.03636363636363636, 0.4, 0.3939393939393939, 0.048484848484848485, 0.03636363636363636, 0.03636363636363636, 0.03636363636363636, 0.1393939393939394, 0.03636363636363636, 0.03636363636363636, 0.03636363636363636, 0.03636363636363636, 0.03636363636363636, 0.03636363636363636, 0.03636363636363636, 0.03636363636363636, 0.03636363636363636, 0.04242424242424243, 0.04242424242424243, 0.5333333333333333, 0.5272727272727272, 0.048484848484848485, 0.10909090909090909, 0.10909090909090909, 0.05454545454545454, 0.05454545454545454, 0.05454545454545454, 0.06060606060606061, 0.07272727272727272, 0.22424242424242424], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/C-C_Bond_Lyase.gap.json b/pfam_gap_rates/C-C_Bond_Lyase.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f6163257431fe251ea15f73c07c6a8fa7da84ac6
--- /dev/null
+++ b/pfam_gap_rates/C-C_Bond_Lyase.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/C2-C2_1.gap.json b/pfam_gap_rates/C2-C2_1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..1d1753f90a358789126ff2069cefbc76d21a6d9d
--- /dev/null
+++ b/pfam_gap_rates/C2-C2_1.gap.json
@@ -0,0 +1 @@
+{"family": "C2-C2_1", "n_seqs": 108, "length": 166, "gap_rates": [0.7129629629629629, 0.4722222222222222, 0.37962962962962965, 0.3611111111111111, 0.3333333333333333, 0.2962962962962963, 0.23148148148148148, 0.2222222222222222, 0.2037037037037037, 0.18518518518518517, 0.16666666666666666, 0.1574074074074074, 0.1388888888888889, 0.12962962962962962, 0.12962962962962962, 0.1574074074074074, 0.1388888888888889, 0.12962962962962962, 0.9074074074074074, 0.1111111111111111, 0.12037037037037036, 0.1111111111111111, 0.1111111111111111, 0.1111111111111111, 0.1111111111111111, 0.12037037037037036, 0.19444444444444445, 0.14814814814814814, 0.12962962962962962, 0.2037037037037037, 0.16666666666666666, 0.1388888888888889, 0.08333333333333333, 0.8055555555555556, 0.8240740740740741, 0.8888888888888888, 0.9351851851851852, 0.9351851851851852, 0.8518518518518519, 0.8055555555555556, 0.7962962962962963, 0.018518518518518517, 0.018518518518518517, 0.018518518518518517, 0.018518518518518517, 0.018518518518518517, 0.018518518518518517, 0.018518518518518517, 0.018518518518518517, 0.018518518518518517, 0.018518518518518517, 0.018518518518518517, 0.018518518518518517, 0.018518518518518517, 0.046296296296296294, 0.018518518518518517, 0.018518518518518517, 0.018518518518518517, 0.018518518518518517, 0.018518518518518517, 0.018518518518518517, 0.018518518518518517, 0.018518518518518517, 0.046296296296296294, 0.046296296296296294, 0.046296296296296294, 0.046296296296296294, 0.046296296296296294, 0.046296296296296294, 0.046296296296296294, 0.046296296296296294, 0.037037037037037035, 0.037037037037037035, 0.037037037037037035, 0.037037037037037035, 0.037037037037037035, 0.037037037037037035, 0.037037037037037035, 0.037037037037037035, 0.037037037037037035, 0.037037037037037035, 0.037037037037037035, 0.037037037037037035, 0.037037037037037035, 0.037037037037037035, 0.027777777777777776, 0.027777777777777776, 0.037037037037037035, 0.046296296296296294, 0.046296296296296294, 0.046296296296296294, 0.05555555555555555, 0.06481481481481481, 0.06481481481481481, 0.06481481481481481, 0.06481481481481481, 0.06481481481481481, 0.06481481481481481, 0.9444444444444444, 0.7407407407407407, 0.07407407407407407, 0.06481481481481481, 0.07407407407407407, 0.09259259259259259, 0.09259259259259259, 0.09259259259259259, 0.09259259259259259, 0.09259259259259259, 0.09259259259259259, 0.09259259259259259, 0.09259259259259259, 0.09259259259259259, 0.09259259259259259, 0.09259259259259259, 0.09259259259259259, 0.09259259259259259, 0.09259259259259259, 0.09259259259259259, 0.9259259259259259, 0.9259259259259259, 0.9444444444444444, 0.9259259259259259, 0.9259259259259259, 0.1388888888888889, 0.18518518518518517, 0.8888888888888888, 0.9166666666666666, 0.9351851851851852, 0.9074074074074074, 0.8240740740740741, 0.48148148148148145, 0.19444444444444445, 0.14814814814814814, 0.1388888888888889, 0.12962962962962962, 0.12962962962962962, 0.12962962962962962, 0.12962962962962962, 0.12962962962962962, 0.12962962962962962, 0.12962962962962962, 0.1388888888888889, 0.14814814814814814, 0.17592592592592593, 0.8055555555555556, 0.19444444444444445, 0.2037037037037037, 0.1574074074074074, 0.6388888888888888, 0.8888888888888888, 0.8240740740740741, 0.6203703703703703, 0.1574074074074074, 0.1574074074074074, 0.1574074074074074, 0.1574074074074074, 0.1574074074074074, 0.1574074074074074, 0.1574074074074074, 0.1574074074074074, 0.18518518518518517, 0.23148148148148148, 0.26851851851851855, 0.2962962962962963, 0.37962962962962965, 0.42592592592592593], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/CAF1A.gap.json b/pfam_gap_rates/CAF1A.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..3811bc4b4510b6a2fb886e466d09d7a9fa8a0494
--- /dev/null
+++ b/pfam_gap_rates/CAF1A.gap.json
@@ -0,0 +1 @@
+{"family": "CAF1A", "n_seqs": 317, "length": 83, "gap_rates": [0.21766561514195584, 0.13564668769716087, 0.12618296529968454, 0.12618296529968454, 0.12618296529968454, 0.12302839116719243, 0.10725552050473186, 0.09779179810725552, 0.0694006309148265, 0.06309148264984227, 0.06624605678233439, 0.056782334384858045, 0.056782334384858045, 0.05362776025236593, 0.05362776025236593, 0.050473186119873815, 0.0473186119873817, 0.03785488958990536, 0.031545741324921134, 0.056782334384858045, 0.056782334384858045, 0.07570977917981073, 0.05993690851735016, 0.050473186119873815, 0.03470031545741325, 0.7381703470031545, 0.7949526813880127, 0.917981072555205, 0.917981072555205, 0.8958990536277602, 0.7444794952681388, 0.7255520504731862, 0.028391167192429023, 0.028391167192429023, 0.028391167192429023, 0.031545741324921134, 0.025236593059936908, 0.08832807570977919, 0.031545741324921134, 0.031545741324921134, 0.03470031545741325, 0.01892744479495268, 0.26498422712933756, 0.015772870662460567, 0.025236593059936908, 0.025236593059936908, 0.025236593059936908, 0.025236593059936908, 0.025236593059936908, 0.025236593059936908, 0.031545741324921134, 0.031545741324921134, 0.028391167192429023, 0.031545741324921134, 0.05993690851735016, 0.04100946372239748, 0.7413249211356467, 0.6624605678233438, 0.9369085173501577, 0.17350157728706625, 0.1640378548895899, 0.03470031545741325, 0.04100946372239748, 0.03470031545741325, 0.03470031545741325, 0.03470031545741325, 0.03470031545741325, 0.03785488958990536, 0.0473186119873817, 0.0473186119873817, 0.050473186119873815, 0.056782334384858045, 0.056782334384858045, 0.056782334384858045, 0.05993690851735016, 0.0694006309148265, 0.08517350157728706, 0.11356466876971609, 0.1640378548895899, 0.2555205047318612, 0.38170347003154576, 0.6214511041009464, 0.7697160883280757], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/CAP59_mtransfer.gap.json b/pfam_gap_rates/CAP59_mtransfer.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..77c038bcca2d898f29306678089083226ebf9659
--- /dev/null
+++ b/pfam_gap_rates/CAP59_mtransfer.gap.json
@@ -0,0 +1 @@
+{"family": "CAP59_mtransfer", "n_seqs": 323, "length": 356, "gap_rates": [0.3622291021671827, 0.13312693498452013, 0.12074303405572756, 0.11764705882352941, 0.11455108359133127, 0.11455108359133127, 0.11145510835913312, 0.10835913312693499, 0.10526315789473684, 0.1021671826625387, 0.1021671826625387, 0.1021671826625387, 0.8978328173374613, 0.10526315789473684, 0.1021671826625387, 0.1021671826625387, 0.6842105263157895, 0.1021671826625387, 0.1021671826625387, 0.1021671826625387, 0.1021671826625387, 0.1021671826625387, 0.09907120743034056, 0.09907120743034056, 0.09907120743034056, 0.09907120743034056, 0.08978328173374613, 0.08978328173374613, 0.08359133126934984, 0.0804953560371517, 0.07739938080495357, 0.07739938080495357, 0.0804953560371517, 0.07430340557275542, 0.06811145510835913, 0.06501547987616099, 0.06501547987616099, 0.06501547987616099, 0.06501547987616099, 0.06501547987616099, 0.06501547987616099, 0.06501547987616099, 0.06501547987616099, 0.06501547987616099, 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\ No newline at end of file
diff --git a/pfam_gap_rates/CARD.gap.json b/pfam_gap_rates/CARD.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b5ceee583ed382e57f9f49f08a34720890a9b6a1
--- /dev/null
+++ b/pfam_gap_rates/CARD.gap.json
@@ -0,0 +1 @@
+{"family": "CARD", "n_seqs": 705, "length": 92, "gap_rates": [0.8198581560283688, 0.36737588652482267, 0.23829787234042554, 0.16453900709219857, 0.14184397163120568, 0.12340425531914893, 0.11631205673758865, 0.10921985815602837, 0.09929078014184398, 0.07943262411347518, 0.07092198581560284, 0.075177304964539, 0.059574468085106386, 0.05531914893617021, 0.0524822695035461, 0.04822695035460993, 0.8723404255319149, 0.8014184397163121, 0.5390070921985816, 0.04397163120567376, 0.03546099290780142, 0.03404255319148936, 0.029787234042553193, 0.028368794326241134, 0.028368794326241134, 0.02695035460992908, 0.02695035460992908, 0.02695035460992908, 0.02695035460992908, 0.03404255319148936, 0.0851063829787234, 0.014184397163120567, 0.00851063829787234, 0.00851063829787234, 0.00851063829787234, 0.00851063829787234, 0.00851063829787234, 0.00851063829787234, 0.0070921985815602835, 0.005673758865248227, 0.005673758865248227, 0.005673758865248227, 0.005673758865248227, 0.9120567375886525, 0.948936170212766, 0.7687943262411348, 0.00425531914893617, 0.005673758865248227, 0.0070921985815602835, 0.9460992907801419, 0.005673758865248227, 0.0028368794326241137, 0.009929078014184398, 0.0014184397163120568, 0.0028368794326241137, 0.0014184397163120568, 0.0014184397163120568, 0.0014184397163120568, 0.0014184397163120568, 0.0014184397163120568, 0.0014184397163120568, 0.0028368794326241137, 0.0028368794326241137, 0.04964539007092199, 0.00851063829787234, 0.0070921985815602835, 0.009929078014184398, 0.009929078014184398, 0.014184397163120567, 0.014184397163120567, 0.014184397163120567, 0.01702127659574468, 0.01702127659574468, 0.01702127659574468, 0.01702127659574468, 0.018439716312056736, 0.018439716312056736, 0.029787234042553193, 0.04113475177304964, 0.9234042553191489, 0.6283687943262412, 0.08936170212765958, 0.0851063829787234, 0.09645390070921986, 0.11063829787234042, 0.14468085106382977, 0.1702127659574468, 0.2, 0.23829787234042554, 0.2907801418439716, 0.4624113475177305, 0.699290780141844], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/CARDB.gap.json b/pfam_gap_rates/CARDB.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..bd5c0e7c73e524cf4a942b348cf41a9824dfe6b6
--- /dev/null
+++ b/pfam_gap_rates/CARDB.gap.json
@@ -0,0 +1 @@
+{"family": "CARDB", "n_seqs": 990, "length": 135, "gap_rates": [0.8646464646464647, 0.4484848484848485, 0.31313131313131315, 0.28484848484848485, 0.2787878787878788, 0.26565656565656565, 0.9383838383838384, 0.6737373737373737, 0.3181818181818182, 0.2474747474747475, 0.2080808080808081, 0.17474747474747473, 0.1494949494949495, 0.13636363636363635, 0.12323232323232323, 0.11313131313131314, 0.09898989898989899, 0.08787878787878788, 0.07171717171717172, 0.0595959595959596, 0.05353535353535353, 0.04242424242424243, 0.03535353535353535, 0.03232323232323232, 0.021212121212121213, 0.021212121212121213, 0.01717171717171717, 0.01717171717171717, 0.01717171717171717, 0.012121212121212121, 0.013131313131313131, 0.012121212121212121, 0.023232323232323233, 0.01919191919191919, 0.031313131313131314, 0.03333333333333333, 0.9242424242424242, 0.7686868686868686, 0.030303030303030304, 0.01616161616161616, 0.013131313131313131, 0.01919191919191919, 0.012121212121212121, 0.00808080808080808, 0.00808080808080808, 0.00909090909090909, 0.00909090909090909, 0.00909090909090909, 0.00909090909090909, 0.007070707070707071, 0.00808080808080808, 0.00808080808080808, 0.03838383838383838, 0.5242424242424243, 0.7313131313131314, 0.8212121212121212, 0.8525252525252526, 0.9444444444444444, 0.8414141414141414, 0.7898989898989899, 0.5888888888888889, 0.43636363636363634, 0.022222222222222223, 0.049494949494949494, 0.047474747474747475, 0.030303030303030304, 0.010101010101010102, 0.6535353535353535, 0.6818181818181818, 0.7292929292929293, 0.8646464646464647, 0.9313131313131313, 0.9494949494949495, 0.9161616161616162, 0.796969696969697, 0.6898989898989899, 0.6646464646464646, 0.6090909090909091, 0.07575757575757576, 0.006060606060606061, 0.005050505050505051, 0.005050505050505051, 0.00808080808080808, 0.00404040404040404, 0.00404040404040404, 0.007070707070707071, 0.006060606060606061, 0.006060606060606061, 0.00808080808080808, 0.010101010101010102, 0.00404040404040404, 0.00404040404040404, 0.005050505050505051, 0.006060606060606061, 0.006060606060606061, 0.021212121212121213, 0.7333333333333333, 0.9474747474747475, 0.9131313131313131, 0.5222222222222223, 0.31717171717171716, 0.09090909090909091, 0.029292929292929294, 0.9373737373737374, 0.9454545454545454, 0.9484848484848485, 0.9414141414141414, 0.9343434343434344, 0.023232323232323233, 0.024242424242424242, 0.02727272727272727, 0.03333333333333333, 0.9333333333333333, 0.03434343434343434, 0.045454545454545456, 0.051515151515151514, 0.0696969696969697, 0.07575757575757576, 0.09797979797979799, 0.11818181818181818, 0.1404040404040404, 0.15656565656565657, 0.18282828282828284, 0.19090909090909092, 0.19393939393939394, 0.20303030303030303, 0.21313131313131314, 0.21414141414141413, 0.2292929292929293, 0.23535353535353534, 0.24141414141414141, 0.2595959595959596, 0.2919191919191919, 0.45656565656565656, 0.6989898989898989], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/CAT_RBD.gap.json b/pfam_gap_rates/CAT_RBD.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f378c6e75fd13ea97c5407f498845aa094975bb0
--- /dev/null
+++ b/pfam_gap_rates/CAT_RBD.gap.json
@@ -0,0 +1 @@
+{"family": "CAT_RBD", "n_seqs": 587, "length": 59, "gap_rates": [0.29642248722316866, 0.09880749574105621, 0.049403747870528106, 0.03236797274275979, 0.02555366269165247, 0.02385008517887564, 0.020442930153321975, 0.020442930153321975, 0.020442930153321975, 0.018739352640545145, 0.018739352640545145, 0.018739352640545145, 0.018739352640545145, 0.020442930153321975, 0.015332197614991482, 0.015332197614991482, 0.013628620102214651, 0.23339011925042588, 0.879045996592845, 0.010221465076660987, 0.010221465076660987, 0.010221465076660987, 0.010221465076660987, 0.010221465076660987, 0.010221465076660987, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.005110732538330494, 0.0017035775127768314, 0.0017035775127768314, 0.0017035775127768314, 0.0017035775127768314, 0.0068143100511073255, 0.0017035775127768314, 0.0034071550255536627, 0.0034071550255536627, 0.005110732538330494, 0.005110732538330494, 0.9471890971039182, 0.008517887563884156, 0.008517887563884156, 0.008517887563884156, 0.008517887563884156, 0.013628620102214651, 0.013628620102214651, 0.017035775127768313, 0.06643952299829642, 0.08347529812606473, 0.09880749574105621, 0.1465076660988075, 0.252129471890971, 0.44804088586030666, 0.7444633730834753, 0.9301533219761499], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/CBAH.gap.json b/pfam_gap_rates/CBAH.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..15e91671113f47c3c81cf9db5f9cfb6249580d58
--- /dev/null
+++ b/pfam_gap_rates/CBAH.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/CBM_2.gap.json b/pfam_gap_rates/CBM_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..3b35197bfdfbdc721fc6a6b6fabdcb7d40985225
--- /dev/null
+++ b/pfam_gap_rates/CBM_2.gap.json
@@ -0,0 +1 @@
+{"family": "CBM_2", "n_seqs": 823, "length": 101, "gap_rates": [0.49210206561360875, 0.29404617253948967, 0.1859052247873633, 0.12515188335358446, 0.09842041312272175, 0.08869987849331713, 0.08626974483596597, 0.09720534629404617, 0.1445929526123937, 0.040097205346294046, 0.038882138517618466, 0.030376670716889428, 0.02551640340218712, 0.019441069258809233, 0.015795868772782502, 0.015795868772782502, 0.014580801944106925, 0.009720534629404616, 0.007290400972053463, 0.004860267314702308, 0.004860267314702308, 0.006075334143377886, 0.0692588092345079, 0.05589307411907655, 0.026731470230862697, 0.020656136087484813, 0.026731470230862697, 0.046172539489671933, 0.11057108140947752, 0.03766707168894289, 0.009720534629404616, 0.004860267314702308, 0.004860267314702308, 0.006075334143377886, 0.007290400972053463, 0.006075334143377886, 0.009720534629404616, 0.014580801944106925, 0.018226002430133656, 0.22478736330498178, 0.10449574726609964, 0.004860267314702308, 0.001215066828675577, 0.004860267314702308, 0.001215066828675577, 0.001215066828675577, 0.001215066828675577, 0.001215066828675577, 0.002430133657351154, 0.002430133657351154, 0.0036452004860267314, 0.002430133657351154, 0.001215066828675577, 0.001215066828675577, 0.0036452004860267314, 0.09477521263669501, 0.02551640340218712, 0.02187120291616039, 0.014580801944106925, 0.002430133657351154, 0.002430133657351154, 0.004860267314702308, 0.0036452004860267314, 0.024301336573511544, 0.01701093560145808, 0.023086269744835967, 0.009720534629404616, 0.004860267314702308, 0.006075334143377886, 0.006075334143377886, 0.006075334143377886, 0.004860267314702308, 0.0036452004860267314, 0.007290400972053463, 0.004860267314702308, 0.006075334143377886, 0.007290400972053463, 0.00850546780072904, 0.009720534629404616, 0.009720534629404616, 0.014580801944106925, 0.020656136087484813, 0.03766707168894289, 0.053462940461725394, 0.06318347509113001, 0.08626974483596597, 0.11543134872417983, 0.22600243013365734, 0.330498177399757, 0.2976913730255164, 0.21628189550425272, 0.23086269744835966, 0.31227217496962334, 0.33292831105710813, 0.34264884568651277, 0.3560145808019441, 0.37910085054678005, 0.39125151883353587, 0.41919805589307413, 0.45443499392466585, 0.46780072904009723], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/CDH-cyt.gap.json b/pfam_gap_rates/CDH-cyt.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..96541605891205bf1e685972e5a1cbabffbe23ab
--- /dev/null
+++ b/pfam_gap_rates/CDH-cyt.gap.json
@@ -0,0 +1 @@
+{"family": "CDH-cyt", "n_seqs": 400, "length": 209, "gap_rates": [0.58, 0.5475, 0.5375, 0.535, 0.5275, 0.5275, 0.515, 0.5025, 0.4975, 0.4975, 0.485, 0.455, 0.425, 0.8475, 0.8725, 0.94, 0.95, 0.95, 0.9275, 0.855, 0.835, 0.38, 0.3525, 0.445, 0.245, 0.19, 0.1825, 0.175, 0.175, 0.1725, 0.1725, 0.1725, 0.1725, 0.175, 0.1725, 0.17, 0.1775, 0.1875, 0.7125, 0.515, 0.4275, 0.3675, 0.3, 0.15, 0.135, 0.125, 0.1175, 0.115, 0.115, 0.1175, 0.5175, 0.1125, 0.1025, 0.0875, 0.08, 0.125, 0.885, 0.7025, 0.85, 0.635, 0.055, 0.05, 0.05, 0.0475, 0.045, 0.045, 0.0425, 0.04, 0.04, 0.95, 0.8925, 0.04, 0.04, 0.0375, 0.0375, 0.0375, 0.0375, 0.04, 0.035, 0.035, 0.035, 0.035, 0.035, 0.035, 0.0325, 0.735, 0.455, 0.0325, 0.03, 0.03, 0.0275, 0.03, 0.03, 0.03, 0.03, 0.03, 0.03, 0.0325, 0.04, 0.04, 0.04, 0.05, 0.0425, 0.0425, 0.0475, 0.05, 0.0475, 0.51, 0.0825, 0.0625, 0.925, 0.95, 0.9125, 0.07, 0.9025, 0.0675, 0.0625, 0.0675, 0.0575, 0.06, 0.065, 0.715, 0.2725, 0.08, 0.08, 0.0825, 0.075, 0.0775, 0.065, 0.0625, 0.06, 0.0625, 0.0625, 0.0625, 0.065, 0.065, 0.085, 0.0825, 0.0825, 0.0825, 0.0725, 0.075, 0.065, 0.9325, 0.09, 0.905, 0.575, 0.2275, 0.11, 0.205, 0.17, 0.2525, 0.1925, 0.195, 0.36, 0.5275, 0.95, 0.9125, 0.3625, 0.795, 0.0875, 0.0675, 0.0675, 0.075, 0.0675, 0.0625, 0.0625, 0.0675, 0.07, 0.065, 0.07, 0.07, 0.065, 0.09, 0.095, 0.0975, 0.115, 0.095, 0.0775, 0.0725, 0.0675, 0.0675, 0.865, 0.0675, 0.0675, 0.065, 0.065, 0.065, 0.065, 0.065, 0.71, 0.0675, 0.07, 0.075, 0.0775, 0.0775, 0.09, 0.09, 0.1, 0.1125, 0.135, 0.93, 0.2125, 0.285, 0.4325, 0.5175, 0.575, 0.58, 0.61], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/CDP-OH_P_tran_2.gap.json b/pfam_gap_rates/CDP-OH_P_tran_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..20c0140db0323a545117882d589cc27e53680ebe
--- /dev/null
+++ b/pfam_gap_rates/CDP-OH_P_tran_2.gap.json
@@ -0,0 +1 @@
+{"family": "CDP-OH_P_tran_2", "n_seqs": 140, "length": 37, "gap_rates": [0.7357142857142858, 0.2857142857142857, 0.14285714285714285, 0.09285714285714286, 0.06428571428571428, 0.02142857142857143, 0.014285714285714285, 0.014285714285714285, 0.007142857142857143, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.02142857142857143, 0.06428571428571428], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/CHASE2.gap.json b/pfam_gap_rates/CHASE2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..631d181a7501c3d0a3788ba9cd15427141f3b71f
--- /dev/null
+++ b/pfam_gap_rates/CHASE2.gap.json
@@ -0,0 +1 @@
+{"family": "CHASE2", "n_seqs": 998, "length": 503, "gap_rates": [0.7865731462925851, 0.5951903807615231, 0.5240480961923848, 0.39879759519038077, 0.31462925851703405, 0.27655310621242485, 0.26152304609218435, 0.2625250501002004, 0.2625250501002004, 0.2685370741482966, 0.1713426853707415, 0.7254509018036072, 0.8466933867735471, 0.9158316633266533, 0.8827655310621243, 0.7785571142284569, 0.5771543086172345, 0.1282565130260521, 0.12324649298597194, 0.11322645290581163, 0.6432865731462926, 0.09719438877755511, 0.09719438877755511, 0.09519038076152304, 0.09519038076152304, 0.0841683366733467, 0.07615230460921844, 0.07114228456913828, 0.07014028056112225, 0.07114228456913828, 0.07114228456913828, 0.06913827655310621, 0.9218436873747495, 0.07414829659318638, 0.09519038076152304, 0.12424849699398798, 0.05511022044088176, 0.16733466933867736, 0.6833667334669339, 0.9028056112224448, 0.9458917835671342, 0.8206412825651302, 0.3897795591182365, 0.07414829659318638, 0.05511022044088176, 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\ No newline at end of file
diff --git a/pfam_gap_rates/CHAT.gap.json b/pfam_gap_rates/CHAT.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..4c7d160f678e116581dd043cdcbc2d4e7674f436
--- /dev/null
+++ b/pfam_gap_rates/CHAT.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/CHCH.gap.json b/pfam_gap_rates/CHCH.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c1a8395d5d0e3ab82e3d2b68f37a2c07484cd244
--- /dev/null
+++ b/pfam_gap_rates/CHCH.gap.json
@@ -0,0 +1 @@
+{"family": "CHCH", "n_seqs": 645, "length": 37, "gap_rates": [0.018604651162790697, 0.017054263565891473, 0.010852713178294573, 0.010852713178294573, 0.004651162790697674, 0.0031007751937984496, 0.0015503875968992248, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.12093023255813953, 0.7209302325581395, 0.6961240310077519, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.009302325581395349, 0.012403100775193798, 0.04806201550387597, 0.14883720930232558, 0.6434108527131783], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/CHRD.gap.json b/pfam_gap_rates/CHRD.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..80b5598e97bf3624f54165614ec1bcec626dcaad
--- /dev/null
+++ b/pfam_gap_rates/CHRD.gap.json
@@ -0,0 +1 @@
+{"family": "CHRD", "n_seqs": 403, "length": 180, "gap_rates": [0.6972704714640199, 0.44168734491315137, 0.3200992555831266, 0.25806451612903225, 0.21339950372208435, 0.18610421836228289, 0.17866004962779156, 0.17121588089330025, 0.16129032258064516, 0.24317617866004962, 0.17866004962779156, 0.3250620347394541, 0.8982630272952854, 0.1935483870967742, 0.39950372208436724, 0.08188585607940446, 0.062034739454094295, 0.062034739454094295, 0.05707196029776675, 0.9330024813895782, 0.9454094292803971, 0.9429280397022333, 0.9230769230769231, 0.04962779156327544, 0.04962779156327544, 0.04466501240694789, 0.04466501240694789, 0.04466501240694789, 0.04466501240694789, 0.04714640198511166, 0.04714640198511166, 0.04962779156327544, 0.9478908188585607, 0.9379652605459057, 0.17369727047146402, 0.2630272952853598, 0.17121588089330025, 0.03722084367245657, 0.04218362282878412, 0.03970223325062035, 0.03722084367245657, 0.03722084367245657, 0.03970223325062035, 0.03970223325062035, 0.034739454094292806, 0.034739454094292806, 0.03225806451612903, 0.03225806451612903, 0.04218362282878412, 0.02481389578163772, 0.12406947890818859, 0.3945409429280397, 0.6426799007444168, 0.7146401985111662, 0.8759305210918115, 0.8933002481389578, 0.9106699751861043, 0.9404466501240695, 0.9429280397022333, 0.9230769230769231, 0.8982630272952854, 0.8858560794044665, 0.7245657568238213, 0.6550868486352357, 0.6129032258064516, 0.19602977667493796, 0.11910669975186104, 0.09181141439205956, 0.13399503722084366, 0.10173697270471464, 0.9478908188585607, 0.09429280397022333, 0.09181141439205956, 0.09181141439205956, 0.10421836228287841, 0.08933002481389578, 0.7245657568238213, 0.8957816377171216, 0.9305210918114144, 0.9454094292803971, 0.9205955334987593, 0.8734491315136477, 0.1315136476426799, 0.11910669975186104, 0.11166253101736973, 0.04962779156327544, 0.03225806451612903, 0.02977667493796526, 0.02729528535980149, 0.02481389578163772, 0.019851116625310174, 0.019851116625310174, 0.019851116625310174, 0.02481389578163772, 0.022332506203473945, 0.04218362282878412, 0.062034739454094295, 0.09181141439205956, 0.10173697270471464, 0.10173697270471464, 0.11662531017369727, 0.02977667493796526, 0.04218362282878412, 0.04466501240694789, 0.10421836228287841, 0.22332506203473945, 0.33002481389578164, 0.4119106699751861, 0.48635235732009924, 0.5732009925558312, 0.5955334987593052, 0.607940446650124, 0.6476426799007444, 0.6774193548387096, 0.7642679900744417, 0.8511166253101737, 0.8759305210918115, 0.8933002481389578, 0.9081885856079405, 0.913151364764268, 0.9404466501240695, 0.9429280397022333, 0.9330024813895782, 0.913151364764268, 0.9007444168734491, 0.890818858560794, 0.8535980148883374, 0.8114143920595533, 0.6997518610421837, 0.6600496277915633, 0.6253101736972705, 0.6004962779156328, 0.5880893300248139, 0.5161290322580645, 0.4640198511166253, 0.3548387096774194, 0.27791563275434245, 0.13647642679900746, 0.06451612903225806, 0.04218362282878412, 0.03722084367245657, 0.01488833746898263, 0.11910669975186104, 0.1141439205955335, 0.11910669975186104, 0.11662531017369727, 0.11166253101736973, 0.10918114143920596, 0.11166253101736973, 0.05955334987593052, 0.7866004962779156, 0.9057071960297767, 0.9230769230769231, 0.9379652605459057, 0.913151364764268, 0.9057071960297767, 0.7791563275434243, 0.01488833746898263, 0.9478908188585607, 0.9478908188585607, 0.01488833746898263, 0.01488833746898263, 0.01488833746898263, 0.01488833746898263, 0.01488833746898263, 0.01488833746898263, 0.01488833746898263, 0.01488833746898263, 0.022332506203473945, 0.02729528535980149, 0.02729528535980149, 0.02729528535980149, 0.02977667493796526, 0.03970223325062035, 0.03722084367245657, 0.03722084367245657, 0.04218362282878412, 0.04218362282878412, 0.062034739454094295, 0.14640198511166252], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/CLN3.gap.json b/pfam_gap_rates/CLN3.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..2d1086bf4a0adad5197fd0db25123a2aeee3b563
--- /dev/null
+++ b/pfam_gap_rates/CLN3.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/COG2.gap.json b/pfam_gap_rates/COG2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ad0a6d29029e1cc564f5a6a20c9a1bebe1eb84f5
--- /dev/null
+++ b/pfam_gap_rates/COG2.gap.json
@@ -0,0 +1 @@
+{"family": "COG2", "n_seqs": 290, "length": 134, "gap_rates": [0.7241379310344828, 0.5862068965517241, 0.47586206896551725, 0.44482758620689655, 0.30344827586206896, 0.2896551724137931, 0.27241379310344827, 0.2413793103448276, 0.22758620689655173, 0.1896551724137931, 0.13793103448275862, 0.1206896551724138, 0.10689655172413794, 0.1, 0.0896551724137931, 0.07931034482758621, 0.08275862068965517, 0.07931034482758621, 0.08275862068965517, 0.08275862068965517, 0.07931034482758621, 0.7310344827586207, 0.2103448275862069, 0.06206896551724138, 0.05517241379310345, 0.05517241379310345, 0.04482758620689655, 0.04482758620689655, 0.034482758620689655, 0.03793103448275862, 0.034482758620689655, 0.03103448275862069, 0.03103448275862069, 0.027586206896551724, 0.027586206896551724, 0.02413793103448276, 0.017241379310344827, 0.017241379310344827, 0.017241379310344827, 0.017241379310344827, 0.017241379310344827, 0.013793103448275862, 0.013793103448275862, 0.010344827586206896, 0.010344827586206896, 0.010344827586206896, 0.0034482758620689655, 0.0034482758620689655, 0.0034482758620689655, 0.0034482758620689655, 0.0034482758620689655, 0.006896551724137931, 0.006896551724137931, 0.0034482758620689655, 0.0034482758620689655, 0.0034482758620689655, 0.0034482758620689655, 0.0034482758620689655, 0.0034482758620689655, 0.0034482758620689655, 0.0034482758620689655, 0.006896551724137931, 0.010344827586206896, 0.006896551724137931, 0.013793103448275862, 0.010344827586206896, 0.010344827586206896, 0.006896551724137931, 0.010344827586206896, 0.010344827586206896, 0.006896551724137931, 0.010344827586206896, 0.010344827586206896, 0.010344827586206896, 0.010344827586206896, 0.010344827586206896, 0.010344827586206896, 0.010344827586206896, 0.010344827586206896, 0.010344827586206896, 0.013793103448275862, 0.017241379310344827, 0.017241379310344827, 0.017241379310344827, 0.020689655172413793, 0.020689655172413793, 0.02413793103448276, 0.027586206896551724, 0.03793103448275862, 0.03793103448275862, 0.034482758620689655, 0.034482758620689655, 0.034482758620689655, 0.03793103448275862, 0.04827586206896552, 0.05172413793103448, 0.05517241379310345, 0.05172413793103448, 0.04827586206896552, 0.04827586206896552, 0.04827586206896552, 0.05172413793103448, 0.05172413793103448, 0.05517241379310345, 0.05517241379310345, 0.05862068965517241, 0.05862068965517241, 0.05862068965517241, 0.05862068965517241, 0.05862068965517241, 0.05862068965517241, 0.06206896551724138, 0.06551724137931035, 0.06551724137931035, 0.07241379310344828, 0.07586206896551724, 0.07931034482758621, 0.07931034482758621, 0.07931034482758621, 0.08620689655172414, 0.09310344827586207, 0.09655172413793103, 0.09655172413793103, 0.1, 0.11379310344827587, 0.11724137931034483, 0.1206896551724138, 0.1310344827586207, 0.1482758620689655, 0.16551724137931034, 0.19310344827586207, 0.24482758620689654, 0.3689655172413793, 0.7275862068965517], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/COG5.gap.json b/pfam_gap_rates/COG5.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d444df090e4ad41cd98e7c0a8b858abafd3de6b2
--- /dev/null
+++ b/pfam_gap_rates/COG5.gap.json
@@ -0,0 +1 @@
+{"family": "COG5", "n_seqs": 252, "length": 149, "gap_rates": [0.5952380952380952, 0.32936507936507936, 0.2222222222222222, 0.2222222222222222, 0.21031746031746032, 0.20238095238095238, 0.20238095238095238, 0.20238095238095238, 0.1984126984126984, 0.1984126984126984, 0.19047619047619047, 0.17857142857142858, 0.17857142857142858, 0.17857142857142858, 0.17857142857142858, 0.17857142857142858, 0.17857142857142858, 0.17857142857142858, 0.1746031746031746, 0.8611111111111112, 0.876984126984127, 0.8928571428571429, 0.8928571428571429, 0.9007936507936508, 0.9047619047619048, 0.9126984126984127, 0.9404761904761905, 0.9285714285714286, 0.9047619047619048, 0.9007936507936508, 0.8968253968253969, 0.8928571428571429, 0.8809523809523809, 0.8650793650793651, 0.8531746031746031, 0.5158730158730159, 0.4801587301587302, 0.46825396825396826, 0.4523809523809524, 0.44841269841269843, 0.44047619047619047, 0.40476190476190477, 0.3888888888888889, 0.11507936507936507, 0.10317460317460317, 0.09523809523809523, 0.06746031746031746, 0.05952380952380952, 0.047619047619047616, 0.04365079365079365, 0.03968253968253968, 0.03968253968253968, 0.03571428571428571, 0.03571428571428571, 0.03571428571428571, 0.031746031746031744, 0.031746031746031744, 0.027777777777777776, 0.027777777777777776, 0.027777777777777776, 0.023809523809523808, 0.023809523809523808, 0.015873015873015872, 0.015873015873015872, 0.011904761904761904, 0.011904761904761904, 0.011904761904761904, 0.007936507936507936, 0.011904761904761904, 0.011904761904761904, 0.015873015873015872, 0.015873015873015872, 0.015873015873015872, 0.015873015873015872, 0.015873015873015872, 0.015873015873015872, 0.015873015873015872, 0.015873015873015872, 0.015873015873015872, 0.015873015873015872, 0.015873015873015872, 0.015873015873015872, 0.015873015873015872, 0.015873015873015872, 0.015873015873015872, 0.015873015873015872, 0.011904761904761904, 0.011904761904761904, 0.7063492063492064, 0.011904761904761904, 0.015873015873015872, 0.015873015873015872, 0.011904761904761904, 0.011904761904761904, 0.015873015873015872, 0.015873015873015872, 0.011904761904761904, 0.011904761904761904, 0.011904761904761904, 0.011904761904761904, 0.011904761904761904, 0.011904761904761904, 0.011904761904761904, 0.011904761904761904, 0.011904761904761904, 0.011904761904761904, 0.015873015873015872, 0.023809523809523808, 0.023809523809523808, 0.01984126984126984, 0.01984126984126984, 0.01984126984126984, 0.01984126984126984, 0.01984126984126984, 0.01984126984126984, 0.01984126984126984, 0.01984126984126984, 0.01984126984126984, 0.01984126984126984, 0.01984126984126984, 0.01984126984126984, 0.01984126984126984, 0.01984126984126984, 0.01984126984126984, 0.01984126984126984, 0.01984126984126984, 0.01984126984126984, 0.01984126984126984, 0.01984126984126984, 0.023809523809523808, 0.023809523809523808, 0.023809523809523808, 0.023809523809523808, 0.023809523809523808, 0.023809523809523808, 0.023809523809523808, 0.023809523809523808, 0.023809523809523808, 0.027777777777777776, 0.027777777777777776, 0.027777777777777776, 0.027777777777777776, 0.04365079365079365, 0.05555555555555555, 0.06349206349206349, 0.07539682539682539, 0.07936507936507936, 0.0873015873015873, 0.15476190476190477], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/COQ9.gap.json b/pfam_gap_rates/COQ9.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..22014fc392fa28245ee6b58543d31db107fb4687
--- /dev/null
+++ b/pfam_gap_rates/COQ9.gap.json
@@ -0,0 +1 @@
+{"family": "COQ9", "n_seqs": 371, "length": 77, "gap_rates": [0.20215633423180593, 0.1967654986522911, 0.14555256064690028, 0.1347708894878706, 0.1293800539083558, 0.10512129380053908, 0.07816711590296496, 0.07008086253369272, 0.0673854447439353, 0.0646900269541779, 0.06199460916442048, 0.06199460916442048, 0.05660377358490566, 0.05660377358490566, 0.05660377358490566, 0.05660377358490566, 0.05660377358490566, 0.05390835579514825, 0.05390835579514825, 0.05390835579514825, 0.04582210242587601, 0.0431266846361186, 0.0431266846361186, 0.0431266846361186, 0.04043126684636118, 0.04043126684636118, 0.04582210242587601, 0.0431266846361186, 0.018867924528301886, 0.02425876010781671, 0.029649595687331536, 0.029649595687331536, 0.026954177897574125, 0.02425876010781671, 0.0215633423180593, 0.0215633423180593, 0.013477088948787063, 0.013477088948787063, 0.013477088948787063, 0.013477088948787063, 0.013477088948787063, 0.013477088948787063, 0.013477088948787063, 0.013477088948787063, 0.013477088948787063, 0.016172506738544475, 0.026954177897574125, 0.026954177897574125, 0.026954177897574125, 0.016172506738544475, 0.016172506738544475, 0.018867924528301886, 0.02425876010781671, 0.02425876010781671, 0.0431266846361186, 0.05929919137466307, 0.05929919137466307, 0.05660377358490566, 0.0431266846361186, 0.03504043126684636, 0.03504043126684636, 0.03504043126684636, 0.03504043126684636, 0.03504043126684636, 0.0431266846361186, 0.0431266846361186, 0.05660377358490566, 0.06199460916442048, 0.0673854447439353, 0.07816711590296496, 0.09703504043126684, 0.10512129380053908, 0.12668463611859837, 0.16981132075471697, 0.2560646900269542, 0.4474393530997305, 0.9299191374663073], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/COX16.gap.json b/pfam_gap_rates/COX16.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..01df33ce669d016ce708fbe8ccc6df8f882224e7
--- /dev/null
+++ b/pfam_gap_rates/COX16.gap.json
@@ -0,0 +1 @@
+{"family": "COX16", "n_seqs": 237, "length": 107, "gap_rates": [0.38396624472573837, 0.11814345991561181, 0.09282700421940929, 0.08016877637130802, 0.05907172995780591, 0.05907172995780591, 0.05907172995780591, 0.05907172995780591, 0.05063291139240506, 0.05485232067510549, 0.04219409282700422, 0.02109704641350211, 0.02531645569620253, 0.02531645569620253, 0.02531645569620253, 0.029535864978902954, 0.02531645569620253, 0.012658227848101266, 0.012658227848101266, 0.012658227848101266, 0.012658227848101266, 0.012658227848101266, 0.012658227848101266, 0.012658227848101266, 0.012658227848101266, 0.012658227848101266, 0.012658227848101266, 0.012658227848101266, 0.012658227848101266, 0.012658227848101266, 0.012658227848101266, 0.008438818565400843, 0.7552742616033755, 0.7974683544303798, 0.8607594936708861, 0.869198312236287, 0.869198312236287, 0.869198312236287, 0.8649789029535865, 0.7974683544303798, 0.7890295358649789, 0.7130801687763713, 0.06751054852320675, 0.04219409282700422, 0.0379746835443038, 0.11814345991561181, 0.08860759493670886, 0.08016877637130802, 0.05907172995780591, 0.07172995780590717, 0.06751054852320675, 0.07172995780590717, 0.08016877637130802, 0.21518987341772153, 0.10548523206751055, 0.8987341772151899, 0.9240506329113924, 0.9367088607594937, 0.9409282700421941, 0.9451476793248945, 0.9451476793248945, 0.9451476793248945, 0.9409282700421941, 0.9409282700421941, 0.9324894514767933, 0.9113924050632911, 0.8649789029535865, 0.05063291139240506, 0.0379746835443038, 0.0379746835443038, 0.0379746835443038, 0.02109704641350211, 0.04219409282700422, 0.9409282700421941, 0.9240506329113924, 0.02109704641350211, 0.016877637130801686, 0.016877637130801686, 0.016877637130801686, 0.016877637130801686, 0.016877637130801686, 0.02109704641350211, 0.03375527426160337, 0.046413502109704644, 0.046413502109704644, 0.046413502109704644, 0.08860759493670886, 0.9156118143459916, 0.9493670886075949, 0.9282700421940928, 0.8607594936708861, 0.5780590717299579, 0.05907172995780591, 0.05907172995780591, 0.05485232067510549, 0.05485232067510549, 0.05907172995780591, 0.06329113924050633, 0.05907172995780591, 0.05907172995780591, 0.05907172995780591, 0.06329113924050633, 0.06329113924050633, 0.08438818565400844, 0.10126582278481013, 0.1350210970464135, 0.2109704641350211], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/COX6B.gap.json b/pfam_gap_rates/COX6B.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..14ebf4e7e713e035f500da41ebd5e35a3312f0c1
--- /dev/null
+++ b/pfam_gap_rates/COX6B.gap.json
@@ -0,0 +1 @@
+{"family": "COX6B", "n_seqs": 591, "length": 78, "gap_rates": [0.6531302876480541, 0.2927241962774958, 0.18274111675126903, 0.16412859560067683, 0.14213197969543148, 0.10321489001692047, 0.06429780033840947, 0.04060913705583756, 0.03553299492385787, 0.023688663282571912, 0.02030456852791878, 0.018612521150592216, 0.01692047377326565, 0.01692047377326565, 0.015228426395939087, 0.015228426395939087, 0.01353637901861252, 0.011844331641285956, 0.01015228426395939, 0.01015228426395939, 0.00676818950930626, 0.00676818950930626, 0.00676818950930626, 0.00676818950930626, 0.00676818950930626, 0.00676818950930626, 0.00676818950930626, 0.00676818950930626, 0.727580372250423, 0.7258883248730964, 0.7191201353637902, 0.7225042301184433, 0.868020304568528, 0.9204737732656514, 0.856175972927242, 0.7021996615905245, 0.7157360406091371, 0.6666666666666666, 0.6582064297800339, 0.6328257191201354, 0.05414551607445008, 0.021996615905245348, 0.015228426395939087, 0.001692047377326565, 0.001692047377326565, 0.001692047377326565, 0.001692047377326565, 0.001692047377326565, 0.001692047377326565, 0.001692047377326565, 0.001692047377326565, 0.001692047377326565, 0.005076142131979695, 0.00338409475465313, 0.011844331641285956, 0.00338409475465313, 0.00338409475465313, 0.005076142131979695, 0.005076142131979695, 0.011844331641285956, 0.028764805414551606, 0.050761421319796954, 0.06260575296108291, 0.0676818950930626, 0.06937394247038917, 0.07106598984771574, 0.0727580372250423, 0.4010152284263959, 0.5871404399323181, 0.6328257191201354, 0.6412859560067682, 0.6514382402707276, 0.41116751269035534, 0.39593908629441626, 0.42978003384094754, 0.5109983079526227, 0.5651438240270727, 0.6582064297800339], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/CREPT.gap.json b/pfam_gap_rates/CREPT.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f66bb8c8de5f1454e7912cd1c4ceb7b83605b64a
--- /dev/null
+++ b/pfam_gap_rates/CREPT.gap.json
@@ -0,0 +1 @@
+{"family": "CREPT", "n_seqs": 162, "length": 147, "gap_rates": [0.5925925925925926, 0.37037037037037035, 0.32098765432098764, 0.3148148148148148, 0.3148148148148148, 0.3148148148148148, 0.3148148148148148, 0.2962962962962963, 0.29012345679012347, 0.30246913580246915, 0.29012345679012347, 0.29012345679012347, 0.29012345679012347, 0.29012345679012347, 0.29012345679012347, 0.2777777777777778, 0.2777777777777778, 0.2716049382716049, 0.2654320987654321, 0.2716049382716049, 0.25308641975308643, 0.16666666666666666, 0.15432098765432098, 0.14814814814814814, 0.14814814814814814, 0.12962962962962962, 0.12962962962962962, 0.12962962962962962, 0.12962962962962962, 0.1419753086419753, 0.14814814814814814, 0.12345679012345678, 0.1111111111111111, 0.1111111111111111, 0.09876543209876543, 0.09876543209876543, 0.09876543209876543, 0.09876543209876543, 0.10493827160493827, 0.10493827160493827, 0.09876543209876543, 0.09876543209876543, 0.09259259259259259, 0.09259259259259259, 0.09259259259259259, 0.09876543209876543, 0.10493827160493827, 0.08641975308641975, 0.08641975308641975, 0.09259259259259259, 0.09876543209876543, 0.09876543209876543, 0.09876543209876543, 0.09876543209876543, 0.09876543209876543, 0.09876543209876543, 0.09876543209876543, 0.09876543209876543, 0.09259259259259259, 0.09259259259259259, 0.09259259259259259, 0.09259259259259259, 0.09259259259259259, 0.09259259259259259, 0.09259259259259259, 0.09259259259259259, 0.09876543209876543, 0.09876543209876543, 0.09876543209876543, 0.09876543209876543, 0.10493827160493827, 0.10493827160493827, 0.10493827160493827, 0.10493827160493827, 0.10493827160493827, 0.10493827160493827, 0.10493827160493827, 0.10493827160493827, 0.1111111111111111, 0.1111111111111111, 0.1111111111111111, 0.1111111111111111, 0.1111111111111111, 0.1111111111111111, 0.1111111111111111, 0.1111111111111111, 0.1111111111111111, 0.10493827160493827, 0.10493827160493827, 0.10493827160493827, 0.10493827160493827, 0.10493827160493827, 0.10493827160493827, 0.10493827160493827, 0.10493827160493827, 0.10493827160493827, 0.10493827160493827, 0.10493827160493827, 0.09259259259259259, 0.08024691358024691, 0.1111111111111111, 0.11728395061728394, 0.12345679012345678, 0.12962962962962962, 0.12962962962962962, 0.12962962962962962, 0.13580246913580246, 0.13580246913580246, 0.13580246913580246, 0.14814814814814814, 0.14814814814814814, 0.14814814814814814, 0.14814814814814814, 0.14814814814814814, 0.14814814814814814, 0.14814814814814814, 0.15432098765432098, 0.15432098765432098, 0.15432098765432098, 0.1728395061728395, 0.17901234567901234, 0.18518518518518517, 0.19135802469135801, 0.19135802469135801, 0.20987654320987653, 0.2654320987654321, 0.2654320987654321, 0.30864197530864196, 0.3148148148148148, 0.32098765432098764, 0.42592592592592593, 0.5308641975308642, 0.4876543209876543, 0.4691358024691358, 0.43209876543209874, 0.42592592592592593, 0.4012345679012346, 0.4012345679012346, 0.4012345679012346, 0.4012345679012346, 0.4012345679012346, 0.4012345679012346, 0.41358024691358025, 0.41975308641975306, 0.41975308641975306, 0.42592592592592593, 0.5617283950617284], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/CRT-like.gap.json b/pfam_gap_rates/CRT-like.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..35dd99b64ea1655c2a1ddef05dd397e37230ed78
--- /dev/null
+++ b/pfam_gap_rates/CRT-like.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/CTP_transf_3.gap.json b/pfam_gap_rates/CTP_transf_3.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..8d3e38fbbab71c477e809b4fbe44b1fc8dddee3c
--- /dev/null
+++ b/pfam_gap_rates/CTP_transf_3.gap.json
@@ -0,0 +1 @@
+{"family": "CTP_transf_3", "n_seqs": 1996, "length": 257, "gap_rates": [0.5856713426853707, 0.13026052104208416, 0.09569138276553106, 0.06162324649298597, 0.05811623246492986, 0.05460921843687375, 0.0531062124248497, 0.04759519038076152, 0.04609218436873747, 0.045591182364729456, 0.045090180360721446, 0.045090180360721446, 0.042585170340681364, 0.041082164328657314, 0.0405811623246493, 0.0405811623246493, 0.0405811623246493, 0.03807615230460922, 0.036072144288577156, 0.03507014028056112, 0.03406813627254509, 0.03206412825651302, 0.03206412825651302, 0.03156312625250501, 0.031062124248496994, 0.02004008016032064, 0.019539078156312624, 0.020541082164328657, 0.020541082164328657, 0.021042084168336674, 0.02004008016032064, 0.021042084168336674, 0.021042084168336674, 0.021042084168336674, 0.023046092184368736, 0.022545090180360723, 0.09468937875751503, 0.06963927855711423, 0.03406813627254509, 0.21943887775551102, 0.02755511022044088, 0.01903807615230461, 0.025050100200400802, 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\ No newline at end of file
diff --git a/pfam_gap_rates/CaM_binding.gap.json b/pfam_gap_rates/CaM_binding.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..59270d8eded77eb08669eff7853aff3fce0386a5
--- /dev/null
+++ b/pfam_gap_rates/CaM_binding.gap.json
@@ -0,0 +1 @@
+{"family": "CaM_binding", "n_seqs": 191, "length": 124, "gap_rates": [0.8167539267015707, 0.743455497382199, 0.6910994764397905, 0.6492146596858639, 0.6020942408376964, 0.5654450261780105, 0.5445026178010471, 0.5340314136125655, 0.5130890052356021, 0.4816753926701571, 0.450261780104712, 0.4293193717277487, 0.418848167539267, 0.41361256544502617, 0.39790575916230364, 0.4083769633507853, 0.6910994764397905, 0.6335078534031413, 0.5916230366492147, 0.34554973821989526, 0.3298429319371728, 0.32460732984293195, 0.3089005235602094, 0.31413612565445026, 0.3089005235602094, 0.3036649214659686, 0.29842931937172773, 0.2931937172774869, 0.27225130890052357, 0.27225130890052357, 0.25654450261780104, 0.6858638743455497, 0.3089005235602094, 0.28272251308900526, 0.28272251308900526, 0.6178010471204188, 0.5706806282722513, 0.5445026178010471, 0.5130890052356021, 0.4973821989528796, 0.450261780104712, 0.43455497382198954, 0.4293193717277487, 0.6492146596858639, 0.33507853403141363, 0.3193717277486911, 0.09947643979057591, 0.09424083769633508, 0.09424083769633508, 0.08376963350785341, 0.09424083769633508, 0.27225130890052357, 0.2356020942408377, 0.13089005235602094, 0.11518324607329843, 0.09424083769633508, 0.1256544502617801, 0.1099476439790576, 0.09947643979057591, 0.10471204188481675, 0.1099476439790576, 0.2094240837696335, 0.16230366492146597, 0.14136125654450263, 0.1099476439790576, 0.08900523560209424, 0.8743455497382199, 0.06806282722513089, 0.05759162303664921, 0.04712041884816754, 0.04712041884816754, 0.04712041884816754, 0.04712041884816754, 0.04712041884816754, 0.9057591623036649, 0.03664921465968586, 0.03664921465968586, 0.03664921465968586, 0.03664921465968586, 0.9424083769633508, 0.9319371727748691, 0.031413612565445025, 0.041884816753926704, 0.03664921465968586, 0.04712041884816754, 0.02617801047120419, 0.02617801047120419, 0.031413612565445025, 0.02617801047120419, 0.03664921465968586, 0.450261780104712, 0.07853403141361257, 0.02617801047120419, 0.02617801047120419, 0.02617801047120419, 0.02617801047120419, 0.02617801047120419, 0.02617801047120419, 0.02617801047120419, 0.03664921465968586, 0.03664921465968586, 0.04712041884816754, 0.031413612565445025, 0.031413612565445025, 0.031413612565445025, 0.04712041884816754, 0.041884816753926704, 0.041884816753926704, 0.03664921465968586, 0.03664921465968586, 0.03664921465968586, 0.03664921465968586, 0.03664921465968586, 0.03664921465968586, 0.03664921465968586, 0.04712041884816754, 0.04712041884816754, 0.04712041884816754, 0.04712041884816754, 0.04712041884816754, 0.05235602094240838, 0.05235602094240838, 0.09947643979057591, 0.31413612565445026], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Calmodulin_bind.gap.json b/pfam_gap_rates/Calmodulin_bind.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..41ccf40e6df0f310d73324aa8002ed37356c147f
--- /dev/null
+++ b/pfam_gap_rates/Calmodulin_bind.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Calponin.gap.json b/pfam_gap_rates/Calponin.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..0532ed28ed95ca10d6bf2fc76f329a011a3c333c
--- /dev/null
+++ b/pfam_gap_rates/Calponin.gap.json
@@ -0,0 +1 @@
+{"family": "Calponin", "n_seqs": 965, "length": 25, "gap_rates": [0.42590673575129534, 0.2849740932642487, 0.13367875647668392, 0.02694300518134715, 0.011398963730569948, 0.0031088082901554403, 0.002072538860103627, 0.002072538860103627, 0.002072538860103627, 0.0, 0.0, 0.002072538860103627, 0.0, 0.0, 0.004145077720207254, 0.007253886010362694, 0.007253886010362694, 0.33264248704663213, 0.017616580310880828, 0.022797927461139896, 0.024870466321243522, 0.03005181347150259, 0.03212435233160622, 0.23834196891191708, 0.5896373056994819], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Caps_synth_GfcC.gap.json b/pfam_gap_rates/Caps_synth_GfcC.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..7aa5d36ab94e39007d0eef8c014f59eaf1bc43f5
--- /dev/null
+++ b/pfam_gap_rates/Caps_synth_GfcC.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Carb_kinase.gap.json b/pfam_gap_rates/Carb_kinase.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..4fef96034c7f6815e63c547b6eed0c1cdcea7339
--- /dev/null
+++ b/pfam_gap_rates/Carb_kinase.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/CarboxypepD_reg.gap.json b/pfam_gap_rates/CarboxypepD_reg.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d84eece56659c01771464315a636e98b8605d3df
--- /dev/null
+++ b/pfam_gap_rates/CarboxypepD_reg.gap.json
@@ -0,0 +1 @@
+{"family": "CarboxypepD_reg", "n_seqs": 4600, "length": 87, "gap_rates": [0.5973913043478261, 0.15934782608695652, 0.10717391304347826, 0.07891304347826086, 0.0667391304347826, 0.059782608695652176, 0.05434782608695652, 0.06978260869565217, 0.06065217391304348, 0.7482608695652174, 0.042826086956521736, 0.03869565217391304, 0.041956521739130434, 0.02434782608695652, 0.022608695652173914, 0.01717391304347826, 0.020652173913043477, 0.011956521739130435, 0.011521739130434782, 0.010652173913043479, 0.010434782608695653, 0.01, 0.01, 0.35043478260869565, 0.31717391304347825, 0.24304347826086956, 0.21217391304347827, 0.07108695652173913, 0.9302173913043478, 0.9408695652173913, 0.9154347826086957, 0.03847826086956522, 0.004782608695652174, 0.002391304347826087, 0.0015217391304347826, 0.0008695652173913044, 0.0004347826086956522, 0.0002173913043478261, 0.0, 0.0004347826086956522, 0.0, 0.0002173913043478261, 0.0, 0.0, 0.0, 0.021521739130434783, 0.07021739130434783, 0.14195652173913043, 0.0034782608695652175, 0.0017391304347826088, 0.004130434782608695, 0.806304347826087, 0.006304347826086957, 0.00608695652173913, 0.005652173913043478, 0.005, 0.006304347826086957, 0.009130434782608696, 0.011304347826086957, 0.04152173913043478, 0.05, 0.043695652173913045, 0.049565217391304345, 0.05521739130434783, 0.06260869565217392, 0.07347826086956522, 0.07891304347826086, 0.08434782608695653, 0.12217391304347826, 0.3873913043478261, 0.32217391304347825, 0.17326086956521738, 0.16934782608695653, 0.16478260869565217, 0.16978260869565218, 0.22869565217391305, 0.2182608695652174, 0.24130434782608695, 0.2632608695652174, 0.29347826086956524, 0.3189130434782609, 0.33956521739130435, 0.3706521739130435, 0.3978260869565217, 0.4469565217391304, 0.4941304347826087, 0.8560869565217392], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Cas_CT1975.gap.json b/pfam_gap_rates/Cas_CT1975.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f50a212b8f15fad5d03c9fad7eaa8a6fdb326966
--- /dev/null
+++ b/pfam_gap_rates/Cas_CT1975.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Cas_Cas6.gap.json b/pfam_gap_rates/Cas_Cas6.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d8fb50ba40c8923e8fa98985a0c838b915c98a3f
--- /dev/null
+++ b/pfam_gap_rates/Cas_Cas6.gap.json
@@ -0,0 +1 @@
+{"family": "Cas_Cas6", "n_seqs": 299, "length": 180, "gap_rates": [0.842809364548495, 0.568561872909699, 0.49498327759197325, 0.451505016722408, 0.38461538461538464, 0.3511705685618729, 0.3076923076923077, 0.29431438127090304, 0.27759197324414714, 0.25752508361204013, 0.24749163879598662, 0.9130434782608695, 0.9498327759197325, 0.9297658862876255, 0.822742474916388, 0.2040133779264214, 0.19732441471571907, 0.1939799331103679, 0.16722408026755853, 0.14381270903010032, 0.13043478260869565, 0.12374581939799331, 0.10702341137123746, 0.10033444816053512, 0.10033444816053512, 0.09698996655518395, 0.08361204013377926, 0.08361204013377926, 0.0802675585284281, 0.07692307692307693, 0.0802675585284281, 0.919732441471572, 0.08361204013377926, 0.2408026755852843, 0.17725752508361203, 0.13712374581939799, 0.38127090301003347, 0.10033444816053512, 0.21070234113712374, 0.046822742474916385, 0.046822742474916385, 0.04013377926421405, 0.04013377926421405, 0.04013377926421405, 0.04013377926421405, 0.04013377926421405, 0.04013377926421405, 0.04013377926421405, 0.04013377926421405, 0.22742474916387959, 0.24414715719063546, 0.8260869565217391, 0.44481605351170567, 0.2842809364548495, 0.23745819397993312, 0.1605351170568562, 0.13712374581939799, 0.12709030100334448, 0.10702341137123746, 0.06354515050167224, 0.0903010033444816, 0.08695652173913043, 0.12709030100334448, 0.11705685618729098, 0.21739130434782608, 0.19063545150501673, 0.9264214046822743, 0.023411371237458192, 0.020066889632107024, 0.020066889632107024, 0.013377926421404682, 0.016722408026755852, 0.016722408026755852, 0.016722408026755852, 0.016722408026755852, 0.013377926421404682, 0.013377926421404682, 0.013377926421404682, 0.013377926421404682, 0.013377926421404682, 0.013377926421404682, 0.016722408026755852, 0.016722408026755852, 0.023411371237458192, 0.043478260869565216, 0.04013377926421405, 0.033444816053511704, 0.030100334448160536, 0.020066889632107024, 0.026755852842809364, 0.056856187290969896, 0.5886287625418061, 0.8127090301003345, 0.8896321070234113, 0.9364548494983278, 0.9431438127090301, 0.9163879598662207, 0.8327759197324415, 0.7157190635451505, 0.3511705685618729, 0.0802675585284281, 0.09364548494983277, 0.056856187290969896, 0.043478260869565216, 0.05016722408026756, 0.08695652173913043, 0.04013377926421405, 0.026755852842809364, 0.030100334448160536, 0.033444816053511704, 0.020066889632107024, 0.9364548494983278, 0.5117056856187291, 0.40468227424749165, 0.05016722408026756, 0.033444816053511704, 0.030100334448160536, 0.0802675585284281, 0.07357859531772576, 0.07692307692307693, 0.08361204013377926, 0.08361204013377926, 0.020066889632107024, 0.5986622073578596, 0.6688963210702341, 0.745819397993311, 0.7926421404682275, 0.8394648829431438, 0.9230769230769231, 0.9464882943143813, 0.8528428093645485, 0.8294314381270903, 0.7792642140468228, 0.705685618729097, 0.6187290969899666, 0.4013377926421405, 0.010033444816053512, 0.04013377926421405, 0.033444816053511704, 0.033444816053511704, 0.030100334448160536, 0.030100334448160536, 0.013377926421404682, 0.013377926421404682, 0.013377926421404682, 0.013377926421404682, 0.013377926421404682, 0.013377926421404682, 0.016722408026755852, 0.9331103678929766, 0.9331103678929766, 0.9297658862876255, 0.013377926421404682, 0.013377926421404682, 0.013377926421404682, 0.013377926421404682, 0.013377926421404682, 0.016722408026755852, 0.016722408026755852, 0.020066889632107024, 0.020066889632107024, 0.016722408026755852, 0.016722408026755852, 0.016722408026755852, 0.016722408026755852, 0.016722408026755852, 0.016722408026755852, 0.016722408026755852, 0.016722408026755852, 0.016722408026755852, 0.016722408026755852, 0.016722408026755852, 0.023411371237458192, 0.033444816053511704, 0.026755852842809364, 0.030100334448160536, 0.033444816053511704, 0.05016722408026756, 0.20066889632107024, 0.5852842809364549], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Cast.gap.json b/pfam_gap_rates/Cast.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..09ac08d01c978340ca33eaf5a903aeb1f0b5de77
--- /dev/null
+++ b/pfam_gap_rates/Cast.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Cation_ATPase_C.gap.json b/pfam_gap_rates/Cation_ATPase_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..66ea2a43ddd38f1f3ce539e0115f7b59d475d557
--- /dev/null
+++ b/pfam_gap_rates/Cation_ATPase_C.gap.json
@@ -0,0 +1 @@
+{"family": "Cation_ATPase_C", "n_seqs": 5000, "length": 240, "gap_rates": [0.59, 0.1692, 0.066, 0.057, 0.054, 0.0516, 0.0438, 0.0434, 0.0424, 0.042, 0.0416, 0.0412, 0.0414, 0.0408, 0.0402, 0.0396, 0.0406, 0.0388, 0.0378, 0.1092, 0.0376, 0.037, 0.0372, 0.037, 0.0368, 0.0368, 0.0368, 0.0366, 0.0364, 0.0388, 0.0412, 0.0378, 0.0382, 0.0378, 0.0374, 0.0368, 0.045, 0.0392, 0.0454, 0.9198, 0.1446, 0.1194, 0.1102, 0.1032, 0.1014, 0.094, 0.034, 0.0338, 0.0336, 0.0348, 0.0346, 0.0342, 0.0332, 0.0334, 0.033, 0.8134, 0.0318, 0.0318, 0.0314, 0.0326, 0.0326, 0.0332, 0.0328, 0.033, 0.0326, 0.0322, 0.033, 0.0328, 0.033, 0.0334, 0.0338, 0.0626, 0.0442, 0.038, 0.0374, 0.0512, 0.8518, 0.8544, 0.8594, 0.8638, 0.8746, 0.8946, 0.9032, 0.9094, 0.9134, 0.9212, 0.9338, 0.9392, 0.9488, 0.9448, 0.9382, 0.9296, 0.9184, 0.9114, 0.9054, 0.9, 0.8882, 0.8664, 0.862, 0.8572, 0.8534, 0.85, 0.2596, 0.2346, 0.1854, 0.1692, 0.1584, 0.1596, 0.2478, 0.3122, 0.604, 0.6588, 0.6664, 0.5338, 0.6558, 0.698, 0.7394, 0.753, 0.8024, 0.8242, 0.8436, 0.8582, 0.876, 0.8844, 0.8952, 0.9276, 0.9454, 0.9498, 0.9474, 0.9412, 0.8974, 0.889, 0.8812, 0.8726, 0.852, 0.838, 0.813, 0.763, 0.7448, 0.721, 0.6614, 0.6466, 0.46, 0.3984, 0.3214, 0.038, 0.0356, 0.0352, 0.0346, 0.0348, 0.0348, 0.0348, 0.0348, 0.0348, 0.0348, 0.0346, 0.0344, 0.0346, 0.0342, 0.0344, 0.0348, 0.0356, 0.0362, 0.037, 0.0372, 0.0374, 0.0378, 0.2594, 0.1384, 0.1262, 0.0828, 0.0738, 0.0678, 0.0714, 0.6396, 0.1078, 0.0688, 0.0652, 0.1126, 0.9492, 0.9298, 0.0622, 0.0468, 0.0522, 0.048, 0.0456, 0.0448, 0.0448, 0.0446, 0.0448, 0.0444, 0.0452, 0.0454, 0.045, 0.0498, 0.0462, 0.0484, 0.048, 0.047, 0.0476, 0.047, 0.048, 0.0488, 0.2644, 0.3164, 0.0516, 0.0508, 0.0494, 0.05, 0.05, 0.0514, 0.053, 0.0544, 0.0546, 0.0552, 0.0946, 0.0614, 0.062, 0.0614, 0.0606, 0.0622, 0.0626, 0.0632, 0.0638, 0.064, 0.0648, 0.066, 0.067, 0.0702, 0.0746, 0.0784, 0.0808, 0.0852, 0.0994, 0.1106, 0.1234, 0.1398, 0.1932, 0.2824, 0.5562], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Cauli_VI.gap.json b/pfam_gap_rates/Cauli_VI.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..135441f060cc064565dc909b7f9b4d97f400971a
--- /dev/null
+++ b/pfam_gap_rates/Cauli_VI.gap.json
@@ -0,0 +1 @@
+{"family": "Cauli_VI", "n_seqs": 961, "length": 44, "gap_rates": [0.49011446409989595, 0.09365244536940687, 0.06347554630593132, 0.05827263267429761, 0.05619146722164412, 0.05098855359001041, 0.05098855359001041, 0.047866805411030174, 0.046826222684703434, 0.044745057232049947, 0.043704474505723206, 0.029136316337148804, 0.021852237252861603, 0.019771071800208116, 0.013527575442247659, 0.011446409989594173, 0.008324661810613945, 0.002081165452653486, 0.0, 0.0, 0.001040582726326743, 0.003121748178980229, 0.002081165452653486, 0.001040582726326743, 0.008324661810613945, 0.008324661810613945, 0.018730489073881373, 0.011446409989594173, 0.015608740894901144, 0.015608740894901144, 0.015608740894901144, 0.018730489073881373, 0.023933402705515087, 0.029136316337148804, 0.03537981269510926, 0.04266389177939646, 0.044745057232049947, 0.04890738813735692, 0.055150884495317375, 0.060353798126951096, 0.07284079084287201, 0.09885535900104059, 0.15608740894901144, 0.3225806451612903], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Cbl_N3.gap.json b/pfam_gap_rates/Cbl_N3.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..704b96f54191ab3525c7f0000eb485fd8a165017
--- /dev/null
+++ b/pfam_gap_rates/Cbl_N3.gap.json
@@ -0,0 +1 @@
+{"family": "Cbl_N3", "n_seqs": 129, "length": 88, "gap_rates": [0.17829457364341086, 0.046511627906976744, 0.046511627906976744, 0.046511627906976744, 0.046511627906976744, 0.046511627906976744, 0.046511627906976744, 0.046511627906976744, 0.046511627906976744, 0.046511627906976744, 0.046511627906976744, 0.046511627906976744, 0.046511627906976744, 0.046511627906976744, 0.046511627906976744, 0.046511627906976744, 0.046511627906976744, 0.046511627906976744, 0.046511627906976744, 0.046511627906976744, 0.046511627906976744, 0.046511627906976744, 0.046511627906976744, 0.06976744186046512, 0.9302325581395349, 0.9224806201550387, 0.03875968992248062, 0.023255813953488372, 0.023255813953488372, 0.031007751937984496, 0.03875968992248062, 0.046511627906976744, 0.05426356589147287, 0.05426356589147287, 0.05426356589147287, 0.05426356589147287, 0.05426356589147287, 0.05426356589147287, 0.05426356589147287, 0.05426356589147287, 0.05426356589147287, 0.05426356589147287, 0.05426356589147287, 0.05426356589147287, 0.05426356589147287, 0.05426356589147287, 0.05426356589147287, 0.06201550387596899, 0.06201550387596899, 0.06201550387596899, 0.06201550387596899, 0.06201550387596899, 0.06201550387596899, 0.06201550387596899, 0.06201550387596899, 0.06201550387596899, 0.05426356589147287, 0.05426356589147287, 0.05426356589147287, 0.05426356589147287, 0.05426356589147287, 0.05426356589147287, 0.05426356589147287, 0.05426356589147287, 0.05426356589147287, 0.05426356589147287, 0.05426356589147287, 0.05426356589147287, 0.05426356589147287, 0.05426356589147287, 0.05426356589147287, 0.05426356589147287, 0.05426356589147287, 0.05426356589147287, 0.05426356589147287, 0.07751937984496124, 0.07751937984496124, 0.07751937984496124, 0.08527131782945736, 0.08527131782945736, 0.08527131782945736, 0.08527131782945736, 0.08527131782945736, 0.08527131782945736, 0.09302325581395349, 0.14728682170542637, 0.15503875968992248, 0.17054263565891473], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Ceramidse_alk_C.gap.json b/pfam_gap_rates/Ceramidse_alk_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..8ff5a5ffe358ddd3c8e5420b05c28fdb4352c664
--- /dev/null
+++ b/pfam_gap_rates/Ceramidse_alk_C.gap.json
@@ -0,0 +1 @@
+{"family": "Ceramidse_alk_C", "n_seqs": 382, "length": 182, "gap_rates": [0.6649214659685864, 0.4581151832460733, 0.32460732984293195, 0.23036649214659685, 0.17539267015706805, 0.16753926701570682, 0.1544502617801047, 0.1518324607329843, 0.14921465968586387, 0.14659685863874344, 0.14659685863874344, 0.93717277486911, 0.918848167539267, 0.468586387434555, 0.518324607329843, 0.15706806282722513, 0.15706806282722513, 0.11518324607329843, 0.0968586387434555, 0.10732984293193717, 0.08115183246073299, 0.07853403141361257, 0.07591623036649214, 0.07591623036649214, 0.07591623036649214, 0.07591623036649214, 0.09162303664921466, 0.07591623036649214, 0.07853403141361257, 0.07853403141361257, 0.9345549738219895, 0.07068062827225131, 0.06806282722513089, 0.06806282722513089, 0.06544502617801047, 0.06544502617801047, 0.06282722513089005, 0.06544502617801047, 0.08115183246073299, 0.06282722513089005, 0.06282722513089005, 0.060209424083769635, 0.060209424083769635, 0.07068062827225131, 0.07591623036649214, 0.08638743455497382, 0.06806282722513089, 0.06282722513089005, 0.0549738219895288, 0.0549738219895288, 0.05235602094240838, 0.049738219895287955, 0.049738219895287955, 0.049738219895287955, 0.049738219895287955, 0.049738219895287955, 0.049738219895287955, 0.11518324607329843, 0.7460732984293194, 0.6492146596858639, 0.060209424083769635, 0.0549738219895288, 0.93717277486911, 0.0549738219895288, 0.05235602094240838, 0.049738219895287955, 0.0549738219895288, 0.0549738219895288, 0.0549738219895288, 0.0549738219895288, 0.05235602094240838, 0.049738219895287955, 0.049738219895287955, 0.05235602094240838, 0.0549738219895288, 0.06282722513089005, 0.06544502617801047, 0.06544502617801047, 0.06544502617801047, 0.06806282722513089, 0.05759162303664921, 0.05759162303664921, 0.0549738219895288, 0.0549738219895288, 0.060209424083769635, 0.07068062827225131, 0.06282722513089005, 0.06282722513089005, 0.06282722513089005, 0.06282722513089005, 0.06282722513089005, 0.06282722513089005, 0.06282722513089005, 0.06282722513089005, 0.06282722513089005, 0.4607329842931937, 0.5445026178010471, 0.16230366492146597, 0.9476439790575916, 0.9214659685863874, 0.08638743455497382, 0.112565445026178, 0.06544502617801047, 0.06544502617801047, 0.0549738219895288, 0.05235602094240838, 0.049738219895287955, 0.04712041884816754, 0.049738219895287955, 0.049738219895287955, 0.049738219895287955, 0.049738219895287955, 0.049738219895287955, 0.049738219895287955, 0.049738219895287955, 0.049738219895287955, 0.06282722513089005, 0.060209424083769635, 0.0549738219895288, 0.060209424083769635, 0.06806282722513089, 0.07068062827225131, 0.16753926701570682, 0.28272251308900526, 0.21727748691099477, 0.9267015706806283, 0.9450261780104712, 0.9083769633507853, 0.07853403141361257, 0.07329842931937172, 0.07068062827225131, 0.07068062827225131, 0.06282722513089005, 0.060209424083769635, 0.060209424083769635, 0.060209424083769635, 0.060209424083769635, 0.060209424083769635, 0.060209424083769635, 0.060209424083769635, 0.0968586387434555, 0.08115183246073299, 0.93717277486911, 0.08115183246073299, 0.918848167539267, 0.9476439790575916, 0.9397905759162304, 0.9162303664921466, 0.08115183246073299, 0.06806282722513089, 0.06806282722513089, 0.06806282722513089, 0.07329842931937172, 0.07329842931937172, 0.07329842931937172, 0.07329842931937172, 0.07329842931937172, 0.07329842931937172, 0.07591623036649214, 0.07591623036649214, 0.07853403141361257, 0.08115183246073299, 0.08115183246073299, 0.08376963350785341, 0.6492146596858639, 0.13350785340314136, 0.12827225130890052, 0.112565445026178, 0.17277486910994763, 0.10732984293193717, 0.10732984293193717, 0.10471204188481675, 0.10471204188481675, 0.10209424083769633, 0.10209424083769633, 0.1099476439790576, 0.11518324607329843, 0.11780104712041885, 0.12303664921465969, 0.12827225130890052, 0.13350785340314136, 0.2513089005235602], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/ChaB.gap.json b/pfam_gap_rates/ChaB.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e4158c8058eaa9a0096228e6fc5cdd2b51ed8a0f
--- /dev/null
+++ b/pfam_gap_rates/ChaB.gap.json
@@ -0,0 +1 @@
+{"family": "ChaB", "n_seqs": 165, "length": 67, "gap_rates": [0.23030303030303031, 0.048484848484848485, 0.04242424242424243, 0.15757575757575756, 0.024242424242424242, 0.012121212121212121, 0.01818181818181818, 0.030303030303030304, 0.4121212121212121, 0.006060606060606061, 0.006060606060606061, 0.006060606060606061, 0.006060606060606061, 0.006060606060606061, 0.006060606060606061, 0.006060606060606061, 0.006060606060606061, 0.006060606060606061, 0.006060606060606061, 0.006060606060606061, 0.006060606060606061, 0.006060606060606061, 0.006060606060606061, 0.0, 0.0, 0.0, 0.19393939393939394, 0.20606060606060606, 0.7818181818181819, 0.2, 0.8, 0.806060606060606, 0.806060606060606, 0.806060606060606, 0.806060606060606, 0.793939393939394, 0.5696969696969697, 0.5696969696969697, 0.5212121212121212, 0.006060606060606061, 0.0, 0.0, 0.0, 0.0, 0.006060606060606061, 0.006060606060606061, 0.006060606060606061, 0.006060606060606061, 0.012121212121212121, 0.012121212121212121, 0.012121212121212121, 0.012121212121212121, 0.012121212121212121, 0.030303030303030304, 0.048484848484848485, 0.06060606060606061, 0.06060606060606061, 0.06666666666666667, 0.06666666666666667, 0.5757575757575758, 0.07878787878787878, 0.07878787878787878, 0.09090909090909091, 0.10303030303030303, 0.10909090909090909, 0.13333333333333333, 0.32727272727272727], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/CheX.gap.json b/pfam_gap_rates/CheX.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..7a99fbc03dca75fe3783ee41e7aeb9cc4623ece5
--- /dev/null
+++ b/pfam_gap_rates/CheX.gap.json
@@ -0,0 +1 @@
+{"family": "CheX", "n_seqs": 636, "length": 112, "gap_rates": [0.5314465408805031, 0.3081761006289308, 0.18081761006289307, 0.11163522012578617, 0.06289308176100629, 0.04716981132075472, 0.03930817610062893, 0.036163522012578615, 0.031446540880503145, 0.029874213836477988, 0.026729559748427674, 0.8946540880503144, 0.025157232704402517, 0.020440251572327043, 0.014150943396226415, 0.009433962264150943, 0.006289308176100629, 0.006289308176100629, 0.0047169811320754715, 0.0047169811320754715, 0.0047169811320754715, 0.0047169811320754715, 0.0047169811320754715, 0.0047169811320754715, 0.0047169811320754715, 0.0047169811320754715, 0.007861635220125786, 0.007861635220125786, 0.006289308176100629, 0.007861635220125786, 0.9040880503144654, 0.0047169811320754715, 0.6650943396226415, 0.0047169811320754715, 0.9433962264150944, 0.35062893081761004, 0.0031446540880503146, 0.0031446540880503146, 0.0031446540880503146, 0.910377358490566, 0.8427672955974843, 0.0031446540880503146, 0.0031446540880503146, 0.007861635220125786, 0.8553459119496856, 0.18081761006289307, 0.03930817610062893, 0.0015723270440251573, 0.0015723270440251573, 0.0015723270440251573, 0.0015723270440251573, 0.0015723270440251573, 0.0015723270440251573, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0015723270440251573, 0.8301886792452831, 0.8301886792452831, 0.8286163522012578, 0.0015723270440251573, 0.0015723270440251573, 0.0015723270440251573, 0.4386792452830189, 0.9009433962264151, 0.4606918238993711, 0.36792452830188677, 0.0031446540880503146, 0.0031446540880503146, 0.8694968553459119, 0.910377358490566, 0.8474842767295597, 0.006289308176100629, 0.007861635220125786, 0.007861635220125786, 0.007861635220125786, 0.0110062893081761, 0.014150943396226415, 0.014150943396226415, 0.014150943396226415, 0.02358490566037736, 0.0440251572327044, 0.05817610062893082, 0.0770440251572327, 0.09276729559748427, 0.12421383647798742, 0.18553459119496854, 0.29245283018867924, 0.29874213836477986, 0.3380503144654088, 0.34591194968553457, 0.4308176100628931, 0.41352201257861637, 0.46226415094339623, 0.449685534591195, 0.4606918238993711, 0.4748427672955975, 0.48742138364779874, 0.49842767295597484, 0.5110062893081762, 0.5455974842767296, 0.6147798742138365, 0.8474842767295597], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Chitin_bind_4.gap.json b/pfam_gap_rates/Chitin_bind_4.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f4410db1e0ff621847219b295350ecafd5e12e5c
--- /dev/null
+++ b/pfam_gap_rates/Chitin_bind_4.gap.json
@@ -0,0 +1 @@
+{"family": "Chitin_bind_4", "n_seqs": 2493, "length": 65, "gap_rates": [0.14480545527476935, 0.1111111111111111, 0.08303249097472924, 0.0609707180104292, 0.05535499398315283, 0.04973926995587646, 0.04612916165262736, 0.041716807059767345, 0.04011231448054553, 0.03890894504612916, 0.4159647011632571, 0.057360609707180106, 0.04973926995587646, 0.6462093862815884, 0.6762936221419976, 0.7829923786602487, 0.6546329723225031, 0.6297633373445648, 0.09546730846369836, 0.10108303249097472, 0.10469314079422383, 0.12154031287605295, 0.1263537906137184, 0.7424789410348978, 0.887284396309667, 0.924187725631769, 0.7685519454472524, 0.7135980746089049, 0.6265543521861211, 0.4993983152827918, 0.4685118331327718, 0.4312073806658644, 0.3509827517047734, 0.014039310068190935, 0.00681909346169274, 0.006417970316887284, 0.004011231448054553, 0.003208985158443642, 0.002807862013638187, 0.00040112314480545525, 0.00040112314480545525, 0.0, 0.00040112314480545525, 0.0008022462896109105, 0.0008022462896109105, 0.0008022462896109105, 0.0036101083032490976, 0.0024067388688327317, 0.004011231448054553, 0.002807862013638187, 0.003208985158443642, 0.0036101083032490976, 0.004412354592860008, 0.0048134777376654635, 0.00681909346169274, 0.00762133975130365, 0.008824709185720016, 0.010830324909747292, 0.6778981147212194, 0.01965503409546731, 0.02486963497793823, 0.031287605294825514, 0.9302045728038508, 0.04011231448054553, 0.0718010429201765], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Choline_sulf_C.gap.json b/pfam_gap_rates/Choline_sulf_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a2bb764b3581d2a034f1282d07f56604df003a19
--- /dev/null
+++ b/pfam_gap_rates/Choline_sulf_C.gap.json
@@ -0,0 +1 @@
+{"family": "Choline_sulf_C", "n_seqs": 164, "length": 55, "gap_rates": [0.7012195121951219, 0.042682926829268296, 0.018292682926829267, 0.018292682926829267, 0.018292682926829267, 0.018292682926829267, 0.018292682926829267, 0.018292682926829267, 0.006097560975609756, 0.006097560975609756, 0.006097560975609756, 0.006097560975609756, 0.006097560975609756, 0.006097560975609756, 0.006097560975609756, 0.006097560975609756, 0.006097560975609756, 0.006097560975609756, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.006097560975609756, 0.018292682926829267, 0.012195121951219513, 0.006097560975609756, 0.006097560975609756, 0.006097560975609756, 0.006097560975609756, 0.006097560975609756, 0.006097560975609756, 0.006097560975609756, 0.03048780487804878, 0.036585365853658534, 0.036585365853658534, 0.036585365853658534, 0.9207317073170732, 0.9207317073170732, 0.042682926829268296, 0.042682926829268296, 0.042682926829268296, 0.042682926829268296, 0.04878048780487805, 0.04878048780487805, 0.054878048780487805, 0.054878048780487805, 0.06097560975609756, 0.10365853658536585], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Chor_lyase.gap.json b/pfam_gap_rates/Chor_lyase.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..eaed1c623269450e66f169f264a038be9a0ab8b7
--- /dev/null
+++ b/pfam_gap_rates/Chor_lyase.gap.json
@@ -0,0 +1 @@
+{"family": "Chor_lyase", "n_seqs": 217, "length": 187, "gap_rates": [0.9216589861751152, 0.8709677419354839, 0.815668202764977, 0.7327188940092166, 0.6497695852534562, 0.5806451612903226, 0.5714285714285714, 0.5622119815668203, 0.5483870967741935, 0.5391705069124424, 0.5299539170506913, 0.4930875576036866, 0.47465437788018433, 0.5345622119815668, 0.3271889400921659, 0.25806451612903225, 0.22119815668202766, 0.18433179723502305, 0.16129032258064516, 0.10599078341013825, 0.10138248847926268, 0.10599078341013825, 0.09216589861751152, 0.08755760368663594, 0.07834101382488479, 0.07373271889400922, 0.07373271889400922, 0.07373271889400922, 0.07373271889400922, 0.07373271889400922, 0.07373271889400922, 0.07373271889400922, 0.07373271889400922, 0.06912442396313365, 0.07834101382488479, 0.15668202764976957, 0.0967741935483871, 0.06451612903225806, 0.7096774193548387, 0.055299539170506916, 0.055299539170506916, 0.055299539170506916, 0.055299539170506916, 0.059907834101382486, 0.06451612903225806, 0.059907834101382486, 0.059907834101382486, 0.06451612903225806, 0.055299539170506916, 0.059907834101382486, 0.059907834101382486, 0.8986175115207373, 0.880184331797235, 0.07834101382488479, 0.06451612903225806, 0.055299539170506916, 0.06451612903225806, 0.055299539170506916, 0.055299539170506916, 0.06451612903225806, 0.06451612903225806, 0.07834101382488479, 0.06912442396313365, 0.06912442396313365, 0.055299539170506916, 0.05069124423963134, 0.06912442396313365, 0.07834101382488479, 0.09216589861751152, 0.271889400921659, 0.15207373271889402, 0.055299539170506916, 0.018433179723502304, 0.013824884792626729, 0.013824884792626729, 0.013824884792626729, 0.013824884792626729, 0.013824884792626729, 0.013824884792626729, 0.013824884792626729, 0.013824884792626729, 0.013824884792626729, 0.013824884792626729, 0.013824884792626729, 0.013824884792626729, 0.013824884792626729, 0.013824884792626729, 0.013824884792626729, 0.013824884792626729, 0.013824884792626729, 0.013824884792626729, 0.013824884792626729, 0.013824884792626729, 0.12442396313364056, 0.06912442396313365, 0.06451612903225806, 0.06451612903225806, 0.06912442396313365, 0.059907834101382486, 0.055299539170506916, 0.03686635944700461, 0.04608294930875576, 0.03686635944700461, 0.027649769585253458, 0.027649769585253458, 0.03225806451612903, 0.03225806451612903, 0.03225806451612903, 0.027649769585253458, 0.027649769585253458, 0.027649769585253458, 0.027649769585253458, 0.027649769585253458, 0.027649769585253458, 0.027649769585253458, 0.027649769585253458, 0.027649769585253458, 0.027649769585253458, 0.03225806451612903, 0.04608294930875576, 0.03686635944700461, 0.03686635944700461, 0.03686635944700461, 0.03686635944700461, 0.03225806451612903, 0.041474654377880185, 0.03686635944700461, 0.041474654377880185, 0.04608294930875576, 0.041474654377880185, 0.055299539170506916, 0.06451612903225806, 0.08755760368663594, 0.1152073732718894, 0.10599078341013825, 0.30414746543778803, 0.31797235023041476, 0.33640552995391704, 0.3824884792626728, 0.423963133640553, 0.5299539170506913, 0.6405529953917051, 0.8433179723502304, 0.9493087557603687, 0.9078341013824884, 0.8110599078341014, 0.576036866359447, 0.4700460829493088, 0.39631336405529954, 0.3456221198156682, 0.31797235023041476, 0.31336405529953915, 0.2857142857142857, 0.14746543778801843, 0.1152073732718894, 0.08294930875576037, 0.06451612903225806, 0.03686635944700461, 0.03686635944700461, 0.03686635944700461, 0.03686635944700461, 0.041474654377880185, 0.041474654377880185, 0.041474654377880185, 0.04608294930875576, 0.04608294930875576, 0.05069124423963134, 0.05069124423963134, 0.05069124423963134, 0.05069124423963134, 0.05069124423963134, 0.05069124423963134, 0.05069124423963134, 0.05069124423963134, 0.05069124423963134, 0.05069124423963134, 0.05069124423963134, 0.05069124423963134, 0.7788018433179723, 0.695852534562212, 0.19815668202764977, 0.3225806451612903, 0.42857142857142855, 0.5990783410138248, 0.7050691244239631, 0.8202764976958525, 0.9078341013824884], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Chs3p.gap.json b/pfam_gap_rates/Chs3p.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f62524f8e608564e385e9cc28226a195ceb21ad6
--- /dev/null
+++ b/pfam_gap_rates/Chs3p.gap.json
@@ -0,0 +1 @@
+{"family": "Chs3p", "n_seqs": 268, "length": 310, "gap_rates": [0.4552238805970149, 0.2873134328358209, 0.2798507462686567, 0.23134328358208955, 0.21641791044776118, 0.19776119402985073, 0.19029850746268656, 0.19029850746268656, 0.19029850746268656, 0.19029850746268656, 0.19029850746268656, 0.19029850746268656, 0.8731343283582089, 0.19029850746268656, 0.19029850746268656, 0.19029850746268656, 0.19029850746268656, 0.19029850746268656, 0.19029850746268656, 0.19029850746268656, 0.19402985074626866, 0.19776119402985073, 0.19402985074626866, 0.19402985074626866, 0.8619402985074627, 0.8805970149253731, 0.8880597014925373, 0.8880597014925373, 0.8917910447761194, 0.8992537313432836, 0.9402985074626866, 0.8955223880597015, 0.8917910447761194, 0.8880597014925373, 0.8843283582089553, 0.8768656716417911, 0.8544776119402985, 0.6529850746268657, 0.4626865671641791, 0.4291044776119403, 0.4291044776119403, 0.8582089552238806, 0.39925373134328357, 0.373134328358209, 0.3582089552238806, 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\ No newline at end of file
diff --git a/pfam_gap_rates/Clat_adaptor_s.gap.json b/pfam_gap_rates/Clat_adaptor_s.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..36faf82d1be1425fbf65ee04d49c5fc0266f4924
--- /dev/null
+++ b/pfam_gap_rates/Clat_adaptor_s.gap.json
@@ -0,0 +1 @@
+{"family": "Clat_adaptor_s", "n_seqs": 2563, "length": 157, "gap_rates": [0.573546625048771, 0.352321498244245, 0.30823253999219663, 0.25048770971517753, 0.23800234100663284, 0.2313694888802185, 0.17908700741318767, 0.16191962543893873, 0.15606710885680844, 0.15489660554038237, 0.15255559890753023, 0.1517752633632462, 0.15099492781896215, 0.14982442450253608, 0.148263753413968, 0.14787358564182598, 0.148263753413968, 0.14358174014826375, 0.14280140460397972, 0.14124073351541164, 0.7440499414748342, 0.14358174014826375, 0.14865392118611004, 0.1443620756925478, 0.13616855247756535, 0.13265704252828717, 0.13811939133827547, 0.13616855247756535, 0.13226687475614515, 0.12368318376902068, 0.11705033164260632, 0.11080764728833398, 0.10495513070620367, 0.11314865392118612, 0.1334373780725712, 0.12251268045259461, 0.1072961373390558, 0.10456496293406164, 0.10261412407335155, 0.10456496293406164, 0.10027311744049941, 0.10105345298478345, 0.10690596956691377, 0.3019898556379243, 0.21147093250097543, 0.17518532969176745, 0.22707764338665626, 0.8291065158017947, 0.9118220834959032, 0.9196254389387437, 0.9332813109637144, 0.9364026531408506, 0.9465470152165432, 0.9461568474444011, 0.9348419820522825, 0.9243074522044479, 0.9141630901287554, 0.8993367147873585, 0.7701911822083496, 0.08583690987124463, 0.074131876706984, 0.06944986344127975, 0.06749902458056964, 0.06554818571985954, 0.06203667577058135, 0.060476004682013265, 0.05696449473273508, 0.9305501365587202, 0.8876316816230979, 0.059695669137729224, 0.05696449473273508, 0.05501365587202497, 0.05150214592274678, 0.05150214592274678, 0.04955130706203668, 0.04603979711275848, 0.05813499804916114, 0.05540382364416699, 0.03823644166991806, 0.037065938353492, 0.035505267264923916, 0.035115099492781895, 0.03316426063207179, 0.03160358954350371, 0.03160358954350371, 0.030823253999219664, 0.030823253999219664, 0.030433086227077643, 0.02887241513850956, 0.0296527506827936, 0.030823253999219664, 0.03160358954350371, 0.031213421771361684, 0.030433086227077643, 0.031213421771361684, 0.030823253999219664, 0.030823253999219664, 0.030042918454935622, 0.030042918454935622, 0.02926258291065158, 0.02926258291065158, 0.030823253999219664, 0.030433086227077643, 0.030433086227077643, 0.030433086227077643, 0.0296527506827936, 0.02926258291065158, 0.02887241513850956, 0.02926258291065158, 0.02887241513850956, 0.027311744049941473, 0.8419820522824815, 0.02848224736636754, 0.0296527506827936, 0.03355442840421381, 0.03589543503706594, 0.03628560280920796, 0.03589543503706594, 0.03355442840421381, 0.03316426063207179, 0.03394459617635583, 0.03394459617635583, 0.03355442840421381, 0.03355442840421381, 0.03394459617635583, 0.03277409285992977, 0.03316426063207179, 0.03316426063207179, 0.034724931720639875, 0.035115099492781895, 0.03628560280920796, 0.037065938353492, 0.03745610612563402, 0.03901677721420211, 0.03940694498634413, 0.04018728053062817, 0.04057744830277019, 0.04564962934061646, 0.07530238002341007, 0.0815450643776824, 0.08817791650409676, 0.09520093640265315, 0.10573546625048771, 0.1240733515411627, 0.16972298088177917, 0.2243464689816621, 0.23605150214592274, 0.32500975419430356, 0.351150994927819, 0.37729223566133435, 0.3909481076863051, 0.4092859929769801, 0.47093250097541944, 0.51931330472103, 0.5797893094030433, 0.6507998439328911, 0.8185719859539602], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Clr2.gap.json b/pfam_gap_rates/Clr2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..dfc16e6336b199bf7f6e3a20406a8e9dc9bb9714
--- /dev/null
+++ b/pfam_gap_rates/Clr2.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Cluap1.gap.json b/pfam_gap_rates/Cluap1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ee610370db00a986c13fea42a057564b90712338
--- /dev/null
+++ b/pfam_gap_rates/Cluap1.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/CmcI.gap.json b/pfam_gap_rates/CmcI.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..575813a05f0cce5b66eaf1ca4c6e2fe25fe324b3
--- /dev/null
+++ b/pfam_gap_rates/CmcI.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/CoaE.gap.json b/pfam_gap_rates/CoaE.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..eacb72e356ad67f7a30723ed4154023f70f698f0
--- /dev/null
+++ b/pfam_gap_rates/CoaE.gap.json
@@ -0,0 +1 @@
+{"family": "CoaE", "n_seqs": 2353, "length": 186, "gap_rates": [0.7518062048448789, 0.30174245643858905, 0.07819804504887377, 0.06629834254143646, 0.05737356566085848, 0.05694857628559286, 0.055673608159796, 0.05439864003399915, 0.053123671908202295, 0.05057373565660858, 0.050148746281342964, 0.04717382065448364, 0.04717382065448364, 0.04717382065448364, 0.04717382065448364, 0.048023799405014875, 0.045898852528686786, 0.044623884402889925, 0.044623884402889925, 0.04334891627709307, 0.04334891627709307, 0.042923926901827454, 0.8516787080322992, 0.042923926901827454, 0.040798980025499365, 0.0416489587760306, 0.03994900127496812, 0.037824054398640033, 0.037399065023374416, 0.0369740756481088, 0.0369740756481088, 0.03654908627284318, 0.03654908627284318, 0.035699107522311944, 0.035699107522311944, 0.03527411814704633, 0.03484912877178071, 0.035699107522311944, 0.03654908627284318, 0.04419889502762431, 0.06417339566510838, 0.0671483212919677, 0.06757331066723332, 0.0624734381640459, 0.058223544411389716, 0.05694857628559286, 0.05057373565660858, 0.044623884402889925, 0.04207394815129622, 0.056523586910327245, 0.050998725031874206, 0.04887377815554611, 0.040798980025499365, 0.040798980025499365, 0.044623884402889925, 0.050998725031874206, 0.051423714407139824, 0.18869528261793456, 0.14492137696557586, 0.06884827879303017, 0.06289842753931152, 0.9307267318317042, 0.061623459413514665, 0.061623459413514665, 0.039524011899702505, 0.037824054398640033, 0.037399065023374416, 0.03824904377390565, 0.03654908627284318, 0.03612409689757756, 0.03654908627284318, 0.03654908627284318, 0.03612409689757756, 0.03612409689757756, 0.03612409689757756, 0.03527411814704633, 0.03527411814704633, 0.037399065023374416, 0.0369740756481088, 0.03612409689757756, 0.0369740756481088, 0.03654908627284318, 0.03654908627284318, 0.03654908627284318, 0.0369740756481088, 0.0369740756481088, 0.0369740756481088, 0.03824904377390565, 0.03867403314917127, 0.03867403314917127, 0.03867403314917127, 0.03867403314917127, 0.037824054398640033, 0.037824054398640033, 0.03824904377390565, 0.0369740756481088, 0.037824054398640033, 0.0416489587760306, 0.04547386315342117, 0.04844878878028049, 0.05057373565660858, 0.053123671908202295, 0.05397365065873353, 0.05354866128346791, 0.046323841903952404, 0.4538886527836804, 0.861878453038674, 0.5235869103272418, 0.305142371440714, 0.04207394815129622, 0.04037399065023375, 0.037399065023374416, 0.0369740756481088, 0.0369740756481088, 0.0369740756481088, 0.0369740756481088, 0.03654908627284318, 0.03824904377390565, 0.037399065023374416, 0.03824904377390565, 0.03612409689757756, 0.0369740756481088, 0.8946026349341266, 0.03612409689757756, 0.03867403314917127, 0.037824054398640033, 0.04037399065023375, 0.042498937526561836, 0.03824904377390565, 0.03654908627284318, 0.035699107522311944, 0.03527411814704633, 0.03654908627284318, 0.03612409689757756, 0.03612409689757756, 0.03654908627284318, 0.037399065023374416, 0.037399065023374416, 0.03909902252443689, 0.03909902252443689, 0.03909902252443689, 0.04037399065023375, 0.04037399065023375, 0.040798980025499365, 0.040798980025499365, 0.04504887377815554, 0.049723756906077346, 0.04759881002974926, 0.04887377815554611, 0.07309817254568636, 0.9375265618359541, 0.04547386315342117, 0.045898852528686786, 0.046323841903952404, 0.048023799405014875, 0.04887377815554611, 0.04844878878028049, 0.04844878878028049, 0.049723756906077346, 0.050148746281342964, 0.050998725031874206, 0.051423714407139824, 0.050998725031874206, 0.05269868253293668, 0.05269868253293668, 0.05737356566085848, 0.058648533786655334, 0.06502337441563961, 0.06969825754356142, 0.07352316192095197, 0.07607309817254569, 0.07692307692307693, 0.0786230344241394, 0.08287292817679558, 0.08924776880577985, 0.09562260943476412, 0.10284742881427965, 0.10539736506587336, 0.11389715257118573, 0.1364215894602635, 0.16404589885252868, 0.20059498512537186, 0.2384190395240119, 0.328516787080323, 0.4861878453038674, 0.7267318317042074], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Coatomer_E.gap.json b/pfam_gap_rates/Coatomer_E.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a039cad5649dd15e3153687976b0605a014050c1
--- /dev/null
+++ b/pfam_gap_rates/Coatomer_E.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/CobT.gap.json b/pfam_gap_rates/CobT.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..7b98be54fe19feea886c8134f13c50c2f1fb3b13
--- /dev/null
+++ b/pfam_gap_rates/CobT.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Cohesin.gap.json b/pfam_gap_rates/Cohesin.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..9533c8a7dd5d5a0662bb4582294c3518ac13b913
--- /dev/null
+++ b/pfam_gap_rates/Cohesin.gap.json
@@ -0,0 +1 @@
+{"family": "Cohesin", "n_seqs": 491, "length": 168, "gap_rates": [0.8716904276985743, 0.6822810590631364, 0.5437881873727087, 0.48676171079429736, 0.47046843177189407, 0.3971486761710794, 0.35845213849287166, 0.32179226069246436, 0.2545824847250509, 0.219959266802444, 0.15682281059063136, 0.10386965376782077, 0.0855397148676171, 0.07942973523421588, 0.06313645621181263, 0.054989816700611, 0.04276985743380855, 0.032586558044806514, 0.032586558044806514, 0.03054989816700611, 0.026476578411405296, 0.026476578411405296, 0.024439918533604887, 0.02240325865580448, 0.024439918533604887, 0.038696537678207736, 0.038696537678207736, 0.45010183299389, 0.9042769857433809, 0.7617107942973523, 0.014256619144602852, 0.010183299389002037, 0.008146639511201629, 0.008146639511201629, 0.008146639511201629, 0.008146639511201629, 0.008146639511201629, 0.008146639511201629, 0.008146639511201629, 0.006109979633401222, 0.018329938900203666, 0.006109979633401222, 0.006109979633401222, 0.02240325865580448, 0.016293279022403257, 0.014256619144602852, 0.012219959266802444, 0.020366598778004074, 0.02240325865580448, 0.024439918533604887, 0.12219959266802444, 0.12016293279022404, 0.11608961303462322, 0.07331975560081466, 0.7881873727087576, 0.814663951120163, 0.8431771894093686, 0.8737270875763747, 0.9022403258655805, 0.9185336048879837, 0.9124236252545825, 0.8940936863543788, 0.8615071283095723, 0.8329938900203666, 0.8004073319755601, 0.7759674134419552, 0.164969450101833, 0.14663951120162932, 0.29938900203665986, 0.5458248472505092, 0.47046843177189407, 0.15478615071283094, 0.10590631364562118, 0.07331975560081466, 0.06109979633401222, 0.05702647657841141, 0.06109979633401222, 0.06924643584521385, 0.07535641547861507, 0.07942973523421588, 0.37067209775967414, 0.19959266802443992, 0.11608961303462322, 0.09572301425661914, 0.07128309572301425, 0.06720977596741344, 0.07739307535641547, 0.07128309572301425, 0.1079429735234216, 0.10183299389002037, 0.09775967413441955, 0.8778004073319755, 0.8167006109979633, 0.37678207739307534, 0.32790224032586557, 0.23014256619144602, 0.17718940936863545, 0.17922606924643583, 0.7270875763747454, 0.31160896130346233, 0.17718940936863545, 0.15274949083503056, 0.12627291242362526, 0.1934826883910387, 0.15885947046843177, 0.12219959266802444, 0.1079429735234216, 0.10590631364562118, 0.7759674134419552, 0.09164969450101833, 0.0835030549898167, 0.0835030549898167, 0.0835030549898167, 0.0835030549898167, 0.0835030549898167, 0.0835030549898167, 0.0855397148676171, 0.08961303462321792, 0.09775967413441955, 0.09775967413441955, 0.09979633401221996, 0.109979633401222, 0.11812627291242363, 0.15274949083503056, 0.2484725050916497, 0.23014256619144602, 0.26476578411405294, 0.5641547861507128, 0.7393075356415478, 0.7841140529531568, 0.8492871690427699, 0.8879837067209776, 0.9429735234215886, 0.8655804480651731, 0.8126272912423625, 0.7576374745417516, 0.7189409368635438, 0.3380855397148676, 0.39918533604887985, 0.3890020366598778, 0.39307535641547864, 0.3869653767820774, 0.40122199592668023, 0.40325865580448067, 0.42362525458248473, 0.45621181262729127, 0.5213849287169042, 0.5112016293279023, 0.5030549898167006, 0.5213849287169042, 0.5458248472505092, 0.5580448065173116, 0.5723014256619144, 0.5865580448065173, 0.6008146639511202, 0.6109979633401222, 0.6272912423625254, 0.6334012219959266, 0.6496945010183299, 0.6578411405295316, 0.845213849287169, 0.7026476578411406, 0.6843177189409368, 0.6985743380855397, 0.7169042769857433, 0.7331975560081466, 0.7780040733197556, 0.8309572301425662], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Coiled.gap.json b/pfam_gap_rates/Coiled.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..3ed245fa80cfda8b720cfcb3ec69c6fceb243235
--- /dev/null
+++ b/pfam_gap_rates/Coiled.gap.json
@@ -0,0 +1 @@
+{"family": "Coiled", "n_seqs": 127, "length": 114, "gap_rates": [0.09448818897637795, 0.09448818897637795, 0.07874015748031496, 0.06299212598425197, 0.031496062992125984, 0.023622047244094488, 0.023622047244094488, 0.023622047244094488, 0.023622047244094488, 0.023622047244094488, 0.9212598425196851, 0.9212598425196851, 0.023622047244094488, 0.023622047244094488, 0.007874015748031496, 0.007874015748031496, 0.9291338582677166, 0.007874015748031496, 0.007874015748031496, 0.007874015748031496, 0.015748031496062992, 0.007874015748031496, 0.8267716535433071, 0.015748031496062992, 0.007874015748031496, 0.007874015748031496, 0.937007874015748, 0.007874015748031496, 0.9448818897637795, 0.5905511811023622, 0.007874015748031496, 0.007874015748031496, 0.007874015748031496, 0.007874015748031496, 0.015748031496062992, 0.007874015748031496, 0.007874015748031496, 0.007874015748031496, 0.007874015748031496, 0.007874015748031496, 0.007874015748031496, 0.007874015748031496, 0.007874015748031496, 0.09448818897637795, 0.6299212598425197, 0.11811023622047244, 0.07086614173228346, 0.07086614173228346, 0.11811023622047244, 0.12598425196850394, 0.12598425196850394, 0.14960629921259844, 0.5984251968503937, 0.6771653543307087, 0.7559055118110236, 0.8267716535433071, 0.8661417322834646, 0.9291338582677166, 0.889763779527559, 0.8582677165354331, 0.7795275590551181, 0.7086614173228346, 0.6377952755905512, 0.5984251968503937, 0.5196850393700787, 0.4881889763779528, 0.4251968503937008, 0.36220472440944884, 0.29133858267716534, 0.2677165354330709, 0.25984251968503935, 0.2204724409448819, 0.1968503937007874, 0.1968503937007874, 0.15748031496062992, 0.16535433070866143, 0.1968503937007874, 0.2125984251968504, 0.2125984251968504, 0.2125984251968504, 0.2125984251968504, 0.1968503937007874, 0.2047244094488189, 0.23622047244094488, 0.25196850393700787, 0.3228346456692913, 0.3779527559055118, 0.3858267716535433, 0.937007874015748, 0.5590551181102362, 0.5354330708661418, 0.5118110236220472, 0.5039370078740157, 0.4645669291338583, 0.47244094488188976, 0.4566929133858268, 0.4566929133858268, 0.4015748031496063, 0.4015748031496063, 0.4330708661417323, 0.3858267716535433, 0.4015748031496063, 0.33858267716535434, 0.33858267716535434, 0.33858267716535434, 0.3700787401574803, 0.5275590551181102, 0.9212598425196851, 0.8740157480314961, 0.3700787401574803, 0.36220472440944884, 0.3700787401574803, 0.41732283464566927, 0.5196850393700787], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Col_cuticle_N.gap.json b/pfam_gap_rates/Col_cuticle_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..393f64fed5611abb7127cb69b92dfbf2e47d6c10
--- /dev/null
+++ b/pfam_gap_rates/Col_cuticle_N.gap.json
@@ -0,0 +1 @@
+{"family": "Col_cuticle_N", "n_seqs": 1820, "length": 50, "gap_rates": [0.5043956043956044, 0.17802197802197803, 0.08846153846153847, 0.05714285714285714, 0.04725274725274725, 0.04395604395604396, 0.04120879120879121, 0.036813186813186814, 0.03406593406593406, 0.03241758241758242, 0.03021978021978022, 0.02912087912087912, 0.026923076923076925, 0.026373626373626374, 0.025824175824175823, 0.024175824175824177, 0.02197802197802198, 0.01868131868131868, 0.018131868131868133, 0.008791208791208791, 0.006593406593406593, 0.006043956043956044, 0.004945054945054945, 0.0038461538461538464, 0.0027472527472527475, 0.0032967032967032967, 0.0032967032967032967, 0.001098901098901099, 0.0016483516483516484, 0.001098901098901099, 0.002197802197802198, 0.0038461538461538464, 0.0038461538461538464, 0.006593406593406593, 0.007692307692307693, 0.008241758241758242, 0.010439560439560439, 0.012087912087912088, 0.013186813186813187, 0.018131868131868133, 0.03021978021978022, 0.04725274725274725, 0.06263736263736264, 0.08681318681318681, 0.10494505494505495, 0.12967032967032968, 0.16703296703296702, 0.18186813186813186, 0.22527472527472528, 0.3994505494505495], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/ComFB.gap.json b/pfam_gap_rates/ComFB.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..abfc49c5dcc224d02dcbcd948e593125017c5a0e
--- /dev/null
+++ b/pfam_gap_rates/ComFB.gap.json
@@ -0,0 +1 @@
+{"family": "ComFB", "n_seqs": 331, "length": 88, "gap_rates": [0.22658610271903323, 0.030211480362537766, 0.027190332326283987, 0.012084592145015106, 0.012084592145015106, 0.00906344410876133, 0.00906344410876133, 0.00906344410876133, 0.00906344410876133, 0.00906344410876133, 0.0030211480362537764, 0.0030211480362537764, 0.0030211480362537764, 0.0030211480362537764, 0.0030211480362537764, 0.0030211480362537764, 0.03323262839879154, 0.04833836858006042, 0.1299093655589124, 0.8459214501510574, 0.8942598187311178, 0.9486404833836858, 0.8851963746223565, 0.8006042296072508, 0.229607250755287, 0.08459214501510574, 0.06042296072507553, 0.045317220543806644, 0.030211480362537766, 0.05740181268882175, 0.027190332326283987, 0.015105740181268883, 0.015105740181268883, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0030211480362537764, 0.0, 0.0030211480362537764, 0.24471299093655588, 0.054380664652567974, 0.054380664652567974, 0.4561933534743202, 0.3564954682779456, 0.3323262839879154, 0.027190332326283987, 0.01812688821752266, 0.015105740181268883, 0.015105740181268883, 0.015105740181268883, 0.015105740181268883, 0.015105740181268883, 0.015105740181268883, 0.015105740181268883, 0.01812688821752266, 0.015105740181268883, 0.015105740181268883, 0.015105740181268883, 0.015105740181268883, 0.015105740181268883, 0.015105740181268883, 0.015105740181268883, 0.01812688821752266, 0.027190332326283987, 0.04229607250755287, 0.0634441087613293, 0.12084592145015106, 0.2084592145015106, 0.41389728096676737], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Com_YlbF.gap.json b/pfam_gap_rates/Com_YlbF.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..deeffb160e1140361fc8dad5bac4cc495ee0d7f3
--- /dev/null
+++ b/pfam_gap_rates/Com_YlbF.gap.json
@@ -0,0 +1 @@
+{"family": "Com_YlbF", "n_seqs": 768, "length": 108, "gap_rates": [0.4375, 0.22395833333333334, 0.12630208333333334, 0.06901041666666667, 0.041666666666666664, 0.02734375, 0.020833333333333332, 0.020833333333333332, 0.015625, 0.014322916666666666, 0.01171875, 0.01171875, 0.010416666666666666, 0.009114583333333334, 0.009114583333333334, 0.0078125, 0.0078125, 0.0078125, 0.0078125, 0.0078125, 0.0078125, 0.0078125, 0.0078125, 0.0078125, 0.0078125, 0.0078125, 0.009114583333333334, 0.0078125, 0.01953125, 0.01171875, 0.0078125, 0.0078125, 0.0078125, 0.0078125, 0.006510416666666667, 0.005208333333333333, 0.005208333333333333, 0.005208333333333333, 0.005208333333333333, 0.005208333333333333, 0.005208333333333333, 0.0026041666666666665, 0.0026041666666666665, 0.0026041666666666665, 0.0013020833333333333, 0.0013020833333333333, 0.014322916666666666, 0.01171875, 0.013020833333333334, 0.01171875, 0.03515625, 0.033854166666666664, 0.05859375, 0.046875, 0.052083333333333336, 0.6380208333333334, 0.7799479166666666, 0.59765625, 0.08072916666666667, 0.0234375, 0.024739583333333332, 0.0234375, 0.029947916666666668, 0.026041666666666668, 0.026041666666666668, 0.026041666666666668, 0.4453125, 0.01171875, 0.005208333333333333, 0.0026041666666666665, 0.0026041666666666665, 0.0026041666666666665, 0.0013020833333333333, 0.0013020833333333333, 0.0013020833333333333, 0.0013020833333333333, 0.0013020833333333333, 0.0013020833333333333, 0.0013020833333333333, 0.0013020833333333333, 0.0013020833333333333, 0.0013020833333333333, 0.0013020833333333333, 0.0013020833333333333, 0.0013020833333333333, 0.0013020833333333333, 0.0013020833333333333, 0.0013020833333333333, 0.0013020833333333333, 0.0013020833333333333, 0.0013020833333333333, 0.0013020833333333333, 0.0013020833333333333, 0.0013020833333333333, 0.0026041666666666665, 0.0026041666666666665, 0.0026041666666666665, 0.0026041666666666665, 0.0026041666666666665, 0.005208333333333333, 0.009114583333333334, 0.010416666666666666, 0.013020833333333334, 0.026041666666666668, 0.0703125, 0.11458333333333333, 0.14453125, 0.7981770833333334], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/CortBP2.gap.json b/pfam_gap_rates/CortBP2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c555693475a49fb357afd75d2f05e9299327d0cc
--- /dev/null
+++ b/pfam_gap_rates/CortBP2.gap.json
@@ -0,0 +1 @@
+{"family": "CortBP2", "n_seqs": 145, "length": 202, "gap_rates": [0.4827586206896552, 0.2689655172413793, 0.19310344827586207, 0.19310344827586207, 0.1724137931034483, 0.1724137931034483, 0.16551724137931034, 0.16551724137931034, 0.16551724137931034, 0.16551724137931034, 0.16551724137931034, 0.15172413793103448, 0.14482758620689656, 0.14482758620689656, 0.14482758620689656, 0.1310344827586207, 0.1310344827586207, 0.1310344827586207, 0.1310344827586207, 0.1310344827586207, 0.11724137931034483, 0.11724137931034483, 0.11724137931034483, 0.11724137931034483, 0.1103448275862069, 0.10344827586206896, 0.10344827586206896, 0.10344827586206896, 0.10344827586206896, 0.09655172413793103, 0.09655172413793103, 0.0896551724137931, 0.0896551724137931, 0.08275862068965517, 0.3448275862068966, 0.10344827586206896, 0.08275862068965517, 0.09655172413793103, 0.12413793103448276, 0.0896551724137931, 0.09655172413793103, 0.0896551724137931, 0.0896551724137931, 0.0896551724137931, 0.08275862068965517, 0.6, 0.10344827586206896, 0.0896551724137931, 0.10344827586206896, 0.42758620689655175, 0.08275862068965517, 0.07586206896551724, 0.07586206896551724, 0.07586206896551724, 0.08275862068965517, 0.08275862068965517, 0.08275862068965517, 0.08275862068965517, 0.08275862068965517, 0.08275862068965517, 0.08275862068965517, 0.903448275862069, 0.9448275862068966, 0.9448275862068966, 0.9448275862068966, 0.9448275862068966, 0.9172413793103448, 0.8551724137931035, 0.14482758620689656, 0.08275862068965517, 0.08275862068965517, 0.10344827586206896, 0.0896551724137931, 0.09655172413793103, 0.10344827586206896, 0.10344827586206896, 0.1103448275862069, 0.1103448275862069, 0.16551724137931034, 0.16551724137931034, 0.14482758620689656, 0.18620689655172415, 0.5448275862068965, 0.46206896551724136, 0.4206896551724138, 0.38620689655172413, 0.9241379310344827, 0.9241379310344827, 0.09655172413793103, 0.08275862068965517, 0.0896551724137931, 0.0896551724137931, 0.0896551724137931, 0.09655172413793103, 0.09655172413793103, 0.09655172413793103, 0.09655172413793103, 0.09655172413793103, 0.09655172413793103, 0.09655172413793103, 0.09655172413793103, 0.09655172413793103, 0.09655172413793103, 0.09655172413793103, 0.09655172413793103, 0.09655172413793103, 0.09655172413793103, 0.09655172413793103, 0.09655172413793103, 0.10344827586206896, 0.1103448275862069, 0.1103448275862069, 0.1103448275862069, 0.10344827586206896, 0.10344827586206896, 0.10344827586206896, 0.10344827586206896, 0.10344827586206896, 0.10344827586206896, 0.1103448275862069, 0.1103448275862069, 0.20689655172413793, 0.2206896551724138, 0.22758620689655173, 0.22758620689655173, 0.23448275862068965, 0.23448275862068965, 0.23448275862068965, 0.23448275862068965, 0.23448275862068965, 0.22758620689655173, 0.2206896551724138, 0.21379310344827587, 0.21379310344827587, 0.22758620689655173, 0.22758620689655173, 0.23448275862068965, 0.23448275862068965, 0.22758620689655173, 0.23448275862068965, 0.2206896551724138, 0.2206896551724138, 0.2206896551724138, 0.2206896551724138, 0.22758620689655173, 0.2206896551724138, 0.2206896551724138, 0.21379310344827587, 0.2206896551724138, 0.21379310344827587, 0.20689655172413793, 0.20689655172413793, 0.21379310344827587, 0.20689655172413793, 0.21379310344827587, 0.2206896551724138, 0.2206896551724138, 0.2206896551724138, 0.21379310344827587, 0.22758620689655173, 0.22758620689655173, 0.23448275862068965, 0.2413793103448276, 0.2413793103448276, 0.2413793103448276, 0.2413793103448276, 0.2413793103448276, 0.2413793103448276, 0.2413793103448276, 0.2413793103448276, 0.2413793103448276, 0.2413793103448276, 0.2413793103448276, 0.2413793103448276, 0.2482758620689655, 0.2482758620689655, 0.2482758620689655, 0.2482758620689655, 0.2482758620689655, 0.2482758620689655, 0.2482758620689655, 0.2482758620689655, 0.2482758620689655, 0.2482758620689655, 0.9379310344827586, 0.9379310344827586, 0.9379310344827586, 0.2482758620689655, 0.2482758620689655, 0.2482758620689655, 0.2482758620689655, 0.2482758620689655, 0.2482758620689655, 0.2482758620689655, 0.2482758620689655, 0.2482758620689655, 0.2482758620689655, 0.2482758620689655, 0.25517241379310346, 0.25517241379310346, 0.2689655172413793, 0.45517241379310347], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/CreD.gap.json b/pfam_gap_rates/CreD.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..edd91ce7bdce3699a069fc1710e706ed086b3cf6
--- /dev/null
+++ b/pfam_gap_rates/CreD.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Cu-oxidase_2.gap.json b/pfam_gap_rates/Cu-oxidase_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..bc0bbe9270d94ccb47d85a68b299bee2d507e7ca
--- /dev/null
+++ b/pfam_gap_rates/Cu-oxidase_2.gap.json
@@ -0,0 +1 @@
+{"family": "Cu-oxidase_2", "n_seqs": 4339, "length": 175, "gap_rates": [0.8382115694860567, 0.7718368287623877, 0.7315049550587693, 0.696934777598525, 0.6699700391795345, 0.6439271721594838, 0.6220327264346623, 0.6058999769532151, 0.5881539525236229, 0.5715602673427057, 0.5584235999078129, 0.5492048859184144, 0.7660751325190136, 0.5644157640009219, 0.5766305600368749, 0.5623415533533073, 0.5558884535607282, 0.5731735422908504, 0.5768610278866099, 0.7022355381424291, 0.6948605669509104, 0.5280018437427979, 0.7298916801106246, 0.8446646692786356, 0.9313205807789813, 0.890988707075363, 0.7686102788660982, 0.5849274026273334, 0.3097487900437889, 0.2804793731274487, 0.2553583775063379, 0.9361604056234155, 0.20396404701544135, 0.18506568333717446, 0.1811477298916801, 0.9472228624106938, 0.3325651071675501, 0.11915187831297534, 0.10371053238073288, 0.09287854344318967, 0.08619497580087578, 0.08043327955750172, 0.07374971191518784, 0.06775754782207882, 0.06245678727817469, 0.05807789813321042, 0.9241760774371975, 0.054159944687716066, 0.053007605439041254, 0.0509333947914266, 0.05024199124222171, 0.049320119843281864, 0.04885918414381194, 0.04793731274487209, 0.04770684489513713, 0.04747637704540217, 0.04724590919566721, 0.05001152339248675, 0.05116386264116156, 0.04885918414381194, 0.05277713758930629, 0.6434662364600138, 0.9022816317123761, 0.9375432127218253, 0.7206729661212261, 0.5531228393639087, 0.05600368748559576, 0.041714680802028115, 0.039179534454943536, 0.03687485595759392, 0.03687485595759392, 0.03641392025812399, 0.035492048859184146, 0.034570177460244295, 0.03387877391103941, 0.041484212952293154, 0.038488130905738646, 0.03572251670891911, 0.03572251670891911, 0.03641392025812399, 0.09403088269186448, 0.0520857340401014, 0.049550587693016825, 0.045863102097257434, 0.04793731274487209, 0.06153491587923485, 0.8082507490205116, 0.8550357225167089, 0.8732426826457709, 0.8833832680341093, 0.9223323346393179, 0.9430744411154643, 0.9085042636552201, 0.8771606360912653, 0.8640239686563724, 0.8391334408849965, 0.6158100944918183, 0.47176768840746713, 0.4867480986402397, 0.45701774602442957, 0.43858031804563263, 0.42383037566259507, 0.4116155796266421, 0.37911961281401246, 0.351693938695552, 0.2977644618575709, 0.2977644618575709, 0.23922562802489053, 0.8902973035261581, 0.8999769532150265, 0.9082737958054852, 0.9310901129292464, 0.9366213413228854, 0.9202581239917031, 0.9022816317123761, 0.897441806867942, 0.8813090573864946, 0.16962433740493202, 0.13159714219866328, 0.07974187600829684, 0.06568333717446416, 0.04793731274487209, 0.03410924176077437, 0.02949988476607513, 0.02949988476607513, 0.02696473841899055, 0.026273334869785666, 0.02696473841899055, 0.03779672735653376, 0.02926941691634017, 0.9244065452869324, 0.9463009910117539, 0.8930629177229776, 0.02811707766766536, 0.02811707766766536, 0.02926941691634017, 0.02949988476607513, 0.028808481216870248, 0.02926941691634017, 0.02949988476607513, 0.030882691864484904, 0.03410924176077437, 0.03503111315971422, 0.9329338557271261, 0.05185526619036644, 0.034570177460244295, 0.03295690251209956, 0.03641392025812399, 0.03987093800414842, 0.04678497349619728, 0.04747637704540217, 0.04885918414381194, 0.0520857340401014, 0.05508181608665591, 0.056925558884535606, 0.057616962433740496, 0.05853883383268034, 0.9161097026964738, 0.9158792348467388, 0.05992164093109011, 0.060152108780825074, 0.060613044480294996, 0.06499193362525928, 0.06522240147499424, 0.0721364369670431, 0.07743719751094723, 0.07928094030882692, 0.08319889375432127, 0.09979257893523853, 0.11776907121456556, 0.1751555657985711, 0.24268264577091495, 0.38856879465314587, 0.5830836598294538, 0.8188522701083198], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Cu-oxidase_4.gap.json b/pfam_gap_rates/Cu-oxidase_4.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ab647ac69490b74d9d833aa2679a893f37c74d66
--- /dev/null
+++ b/pfam_gap_rates/Cu-oxidase_4.gap.json
@@ -0,0 +1 @@
+{"family": "Cu-oxidase_4", "n_seqs": 1616, "length": 264, "gap_rates": [0.4715346534653465, 0.3694306930693069, 0.34777227722772275, 0.33972772277227725, 0.33601485148514854, 0.327970297029703, 0.3261138613861386, 0.3217821782178218, 0.3186881188118812, 0.3155940594059406, 0.3056930693069307, 0.29826732673267325, 0.28589108910891087, 0.27660891089108913, 0.2636138613861386, 0.2524752475247525, 0.25, 0.24876237623762376, 0.24752475247524752, 0.2438118811881188, 0.24628712871287128, 0.2469059405940594, 0.24752475247524752, 0.22896039603960397, 0.21905940594059406, 0.2073019801980198, 0.20606435643564355, 0.20235148514851486, 0.1875, 0.17574257425742573, 0.16584158415841585, 0.15655940594059406, 0.14913366336633663, 0.13985148514851486, 0.13242574257425743, 0.12685643564356436, 0.12438118811881188, 0.12314356435643564, 0.12066831683168316, 0.18254950495049505, 0.15222772277227722, 0.2933168316831683, 0.26794554455445546, 0.1745049504950495, 0.06311881188118812, 0.0525990099009901, 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\ No newline at end of file
diff --git a/pfam_gap_rates/Cu2_monoox_C.gap.json b/pfam_gap_rates/Cu2_monoox_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..1574382466b52340aab26e5a3ee832bb6664d1b9
--- /dev/null
+++ b/pfam_gap_rates/Cu2_monoox_C.gap.json
@@ -0,0 +1 @@
+{"family": "Cu2_monoox_C", "n_seqs": 461, "length": 166, "gap_rates": [0.7462039045553145, 0.40563991323210413, 0.3080260303687636, 0.28633405639913234, 0.279826464208243, 0.27765726681127983, 0.279826464208243, 0.27331887201735355, 0.27765726681127983, 0.2668112798264642, 0.4642082429501085, 0.5227765726681128, 0.4967462039045553, 0.43817787418655096, 0.23210412147505424, 0.22342733188720174, 0.21908893709327548, 0.21258134490238612, 0.20824295010845986, 0.20607375271149675, 0.3210412147505423, 0.210412147505423, 0.21258134490238612, 0.20824295010845986, 0.20824295010845986, 0.2039045553145336, 0.19956616052060738, 0.19305856832971802, 0.19088937093275488, 0.18655097613882862, 0.18872017353579176, 0.18655097613882862, 0.1822125813449024, 0.175704989154013, 0.18004338394793926, 0.45770065075921906, 0.210412147505423, 0.1822125813449024, 0.16268980477223427, 0.16052060737527116, 0.5075921908893709, 0.4229934924078091, 0.39045553145336226, 0.3839479392624729, 0.3665943600867679, 0.09544468546637744, 0.08026030368763558, 0.07809110629067245, 0.0824295010845987, 0.0824295010845987, 0.08459869848156182, 0.0824295010845987, 0.0824295010845987, 0.0824295010845987, 0.0824295010845987, 0.08026030368763558, 0.07592190889370933, 0.07809110629067245, 0.07592190889370933, 0.0737527114967462, 0.0737527114967462, 0.0737527114967462, 0.07592190889370933, 0.07592190889370933, 0.0737527114967462, 0.07809110629067245, 0.0737527114967462, 0.0824295010845987, 0.0737527114967462, 0.8633405639913232, 0.9002169197396963, 0.8741865509761388, 0.8156182212581344, 0.21258134490238612, 0.0824295010845987, 0.10845986984815618, 0.0737527114967462, 0.0737527114967462, 0.07592190889370933, 0.07592190889370933, 0.07592190889370933, 0.07158351409978309, 0.06941431670281996, 0.07592190889370933, 0.06941431670281996, 0.07158351409978309, 0.06941431670281996, 0.37310195227765725, 0.3557483731019523, 0.08026030368763558, 0.0737527114967462, 0.06941431670281996, 0.06941431670281996, 0.06941431670281996, 0.06724511930585683, 0.0737527114967462, 0.0911062906724512, 0.08676789587852494, 0.06941431670281996, 0.9088937093275488, 0.06941431670281996, 0.06724511930585683, 0.06290672451193059, 0.06724511930585683, 0.0737527114967462, 0.08459869848156182, 0.08459869848156182, 0.08459869848156182, 0.0824295010845987, 0.0824295010845987, 0.08026030368763558, 0.0824295010845987, 0.0824295010845987, 0.08459869848156182, 0.08459869848156182, 0.08459869848156182, 0.08676789587852494, 0.2472885032537961, 0.1019522776572668, 0.10412147505422993, 0.10412147505422993, 0.10629067245119306, 0.1019522776572668, 0.10412147505422993, 0.1019522776572668, 0.10412147505422993, 0.1019522776572668, 0.1019522776572668, 0.10412147505422993, 0.10412147505422993, 0.1019522776572668, 0.1019522776572668, 0.1019522776572668, 0.10412147505422993, 0.10629067245119306, 0.1279826464208243, 0.15184381778741865, 0.14967462039045554, 0.16919739696312364, 0.1822125813449024, 0.19739696312364424, 0.7635574837310195, 0.8047722342733189, 0.7939262472885033, 0.7158351409978309, 0.21258134490238612, 0.25813449023861174, 0.26898047722342733, 0.29067245119305857, 0.2950108459869848, 0.3123644251626898, 0.3210412147505423, 0.3210412147505423, 0.3405639913232104, 0.3579175704989154, 0.48156182212581344, 0.527114967462039, 0.5401301518438177, 0.5835140997830802, 0.6030368763557483, 0.613882863340564, 0.6399132321041214, 0.648590021691974, 0.6767895878524945, 0.7939262472885033, 0.8828633405639913], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Cupin_7.gap.json b/pfam_gap_rates/Cupin_7.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ec71bc09ec4bd67b09dbb88784d10318f3686c54
--- /dev/null
+++ b/pfam_gap_rates/Cupin_7.gap.json
@@ -0,0 +1 @@
+{"family": "Cupin_7", "n_seqs": 625, "length": 97, "gap_rates": [0.6944, 0.4208, 0.4048, 0.3968, 0.6064, 0.3744, 0.2656, 0.2128, 0.1808, 0.1712, 0.1664, 0.1584, 0.1504, 0.1408, 0.136, 0.1296, 0.2224, 0.1248, 0.1216, 0.2416, 0.1776, 0.472, 0.3168, 0.2544, 0.032, 0.0192, 0.016, 0.016, 0.0128, 0.0064, 0.0048, 0.0048, 0.0048, 0.0048, 0.0064, 0.0064, 0.0048, 0.0064, 0.0064, 0.0128, 0.0096, 0.0112, 0.0064, 0.0048, 0.0048, 0.0048, 0.0032, 0.0032, 0.0032, 0.0016, 0.0016, 0.0016, 0.0016, 0.0016, 0.0016, 0.0016, 0.0016, 0.0016, 0.0016, 0.0016, 0.0016, 0.0032, 0.8784, 0.8448, 0.0032, 0.0032, 0.0032, 0.0032, 0.0048, 0.0048, 0.0064, 0.0064, 0.0064, 0.008, 0.008, 0.008, 0.0144, 0.0128, 0.0128, 0.0176, 0.0256, 0.8576, 0.032, 0.9104, 0.04, 0.0464, 0.056, 0.8752, 0.8576, 0.0704, 0.0736, 0.0832, 0.1424, 0.392, 0.496, 0.5984, 0.896], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/CwfJ_C_2.gap.json b/pfam_gap_rates/CwfJ_C_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ae60c76e83a7e8159f0e52cab5d424e05cf699a5
--- /dev/null
+++ b/pfam_gap_rates/CwfJ_C_2.gap.json
@@ -0,0 +1 @@
+{"family": "CwfJ_C_2", "n_seqs": 564, "length": 136, "gap_rates": [0.5726950354609929, 0.5407801418439716, 0.5283687943262412, 0.5141843971631206, 0.4929078014184397, 0.9290780141843972, 0.9290780141843972, 0.48226950354609927, 0.45567375886524825, 0.4432624113475177, 0.4379432624113475, 0.4237588652482269, 0.4148936170212766, 0.40070921985815605, 0.5514184397163121, 0.43439716312056736, 0.4148936170212766, 0.875886524822695, 0.8847517730496454, 0.8865248226950354, 0.8918439716312057, 0.8865248226950354, 0.8812056737588653, 0.774822695035461, 0.36524822695035464, 0.32978723404255317, 0.31560283687943264, 0.299645390070922, 0.2872340425531915, 0.26595744680851063, 0.2624113475177305, 0.2322695035460993, 0.21631205673758866, 0.20035460992907803, 0.1524822695035461, 0.1276595744680851, 0.11347517730496454, 0.10638297872340426, 0.10106382978723404, 0.10106382978723404, 0.08865248226950355, 0.9042553191489362, 0.9308510638297872, 0.9468085106382979, 0.9361702127659575, 0.9166666666666666, 0.8936170212765957, 0.20567375886524822, 0.12943262411347517, 0.07092198581560284, 0.10638297872340426, 0.6081560283687943, 0.49822695035460995, 0.03546099290780142, 0.024822695035460994, 0.02304964539007092, 0.03723404255319149, 0.026595744680851064, 0.2695035460992908, 0.15602836879432624, 0.12056737588652482, 0.02127659574468085, 0.898936170212766, 0.9219858156028369, 0.9219858156028369, 0.925531914893617, 0.925531914893617, 0.925531914893617, 0.9273049645390071, 0.9308510638297872, 0.9468085106382979, 0.9343971631205674, 0.9290780141843972, 0.9273049645390071, 0.925531914893617, 0.925531914893617, 0.9237588652482269, 0.9219858156028369, 0.9184397163120568, 0.8882978723404256, 0.012411347517730497, 0.012411347517730497, 0.014184397163120567, 0.012411347517730497, 0.01773049645390071, 0.012411347517730497, 0.875886524822695, 0.875886524822695, 0.008865248226950355, 0.0070921985815602835, 0.008865248226950355, 0.0070921985815602835, 0.0070921985815602835, 0.008865248226950355, 0.010638297872340425, 0.010638297872340425, 0.8563829787234043, 0.8546099290780141, 0.010638297872340425, 0.010638297872340425, 0.010638297872340425, 0.010638297872340425, 0.010638297872340425, 0.012411347517730497, 0.012411347517730497, 0.012411347517730497, 0.4219858156028369, 0.03723404255319149, 0.040780141843971635, 0.01950354609929078, 0.5390070921985816, 0.03546099290780142, 0.026595744680851064, 0.026595744680851064, 0.026595744680851064, 0.024822695035460994, 0.03900709219858156, 0.0425531914893617, 0.04964539007092199, 0.11879432624113476, 0.06914893617021277, 0.026595744680851064, 0.026595744680851064, 0.028368794326241134, 0.030141843971631204, 0.030141843971631204, 0.031914893617021274, 0.044326241134751775, 0.044326241134751775, 0.04964539007092199, 0.0549645390070922, 0.0673758865248227, 0.08333333333333333, 0.1099290780141844, 0.2375886524822695, 0.37943262411347517], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Cyanate_lyase.gap.json b/pfam_gap_rates/Cyanate_lyase.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ac1531de3bd069b0a1971274705b45a06542d915
--- /dev/null
+++ b/pfam_gap_rates/Cyanate_lyase.gap.json
@@ -0,0 +1 @@
+{"family": "Cyanate_lyase", "n_seqs": 350, "length": 69, "gap_rates": [0.3028571428571429, 0.07714285714285714, 0.04, 0.03142857142857143, 0.03142857142857143, 0.03142857142857143, 0.03142857142857143, 0.02857142857142857, 0.02857142857142857, 0.025714285714285714, 0.017142857142857144, 0.017142857142857144, 0.017142857142857144, 0.014285714285714285, 0.014285714285714285, 0.014285714285714285, 0.011428571428571429, 0.011428571428571429, 0.011428571428571429, 0.005714285714285714, 0.005714285714285714, 0.005714285714285714, 0.005714285714285714, 0.008571428571428572, 0.005714285714285714, 0.005714285714285714, 0.005714285714285714, 0.005714285714285714, 0.005714285714285714, 0.005714285714285714, 0.008571428571428572, 0.008571428571428572, 0.008571428571428572, 0.014285714285714285, 0.014285714285714285, 0.014285714285714285, 0.014285714285714285, 0.014285714285714285, 0.014285714285714285, 0.014285714285714285, 0.014285714285714285, 0.014285714285714285, 0.014285714285714285, 0.014285714285714285, 0.014285714285714285, 0.014285714285714285, 0.014285714285714285, 0.02, 0.025714285714285714, 0.02857142857142857, 0.03142857142857143, 0.02857142857142857, 0.02857142857142857, 0.6828571428571428, 0.025714285714285714, 0.02857142857142857, 0.02857142857142857, 0.03142857142857143, 0.03142857142857143, 0.03142857142857143, 0.03428571428571429, 0.037142857142857144, 0.037142857142857144, 0.04285714285714286, 0.09428571428571429, 0.10285714285714286, 0.11142857142857143, 0.16, 0.8571428571428571], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Cytochrom_NNT.gap.json b/pfam_gap_rates/Cytochrom_NNT.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..4be7eec14398c8646d9e9a8327385722e10298ad
--- /dev/null
+++ b/pfam_gap_rates/Cytochrom_NNT.gap.json
@@ -0,0 +1 @@
+{"family": "Cytochrom_NNT", "n_seqs": 546, "length": 185, "gap_rates": [0.891941391941392, 0.8223443223443223, 0.7252747252747253, 0.6227106227106227, 0.554945054945055, 0.46153846153846156, 0.38278388278388276, 0.304029304029304, 0.21611721611721613, 0.163003663003663, 0.11904761904761904, 0.08974358974358974, 0.07142857142857142, 0.06593406593406594, 0.06227106227106227, 0.06043956043956044, 0.06227106227106227, 0.06043956043956044, 0.06043956043956044, 0.05860805860805861, 0.05860805860805861, 0.056776556776556776, 0.054945054945054944, 0.054945054945054944, 0.05128205128205128, 0.05128205128205128, 0.054945054945054944, 0.047619047619047616, 0.040293040293040296, 0.040293040293040296, 0.040293040293040296, 0.0347985347985348, 0.0347985347985348, 0.027472527472527472, 0.029304029304029304, 0.027472527472527472, 0.027472527472527472, 0.027472527472527472, 0.9212454212454212, 0.027472527472527472, 0.023809523809523808, 0.023809523809523808, 0.023809523809523808, 0.05311355311355311, 0.045787545787545784, 0.02197802197802198, 0.02197802197802198, 0.020146520146520148, 0.7234432234432234, 0.018315018315018316, 0.018315018315018316, 0.018315018315018316, 0.018315018315018316, 0.02197802197802198, 0.027472527472527472, 0.027472527472527472, 0.027472527472527472, 0.018315018315018316, 0.018315018315018316, 0.3443223443223443, 0.42124542124542125, 0.43040293040293043, 0.43956043956043955, 0.4340659340659341, 0.358974358974359, 0.054945054945054944, 0.027472527472527472, 0.018315018315018316, 0.016483516483516484, 0.016483516483516484, 0.016483516483516484, 0.016483516483516484, 0.016483516483516484, 0.018315018315018316, 0.023809523809523808, 0.023809523809523808, 0.924908424908425, 0.9175824175824175, 0.027472527472527472, 0.02564102564102564, 0.02564102564102564, 0.7527472527472527, 0.027472527472527472, 0.031135531135531136, 0.029304029304029304, 0.029304029304029304, 0.03296703296703297, 0.031135531135531136, 0.05128205128205128, 0.0641025641025641, 0.673992673992674, 0.0695970695970696, 0.0641025641025641, 0.04212454212454213, 0.0347985347985348, 0.038461538461538464, 0.038461538461538464, 0.040293040293040296, 0.04212454212454213, 0.047619047619047616, 0.23809523809523808, 0.23443223443223443, 0.21611721611721613, 0.1575091575091575, 0.19047619047619047, 0.2087912087912088, 0.23443223443223443, 0.23076923076923078, 0.2087912087912088, 0.19597069597069597, 0.20512820512820512, 0.4835164835164835, 0.46703296703296704, 0.4230769230769231, 0.38644688644688646, 0.3791208791208791, 0.32051282051282054, 0.2967032967032967, 0.2893772893772894, 0.2802197802197802, 0.25274725274725274, 0.23809523809523808, 0.21428571428571427, 0.2087912087912088, 0.19597069597069597, 0.1794871794871795, 0.17765567765567766, 0.184981684981685, 0.23626373626373626, 0.22527472527472528, 0.2087912087912088, 0.17032967032967034, 0.14835164835164835, 0.14835164835164835, 0.14835164835164835, 0.15018315018315018, 0.15018315018315018, 0.14835164835164835, 0.15018315018315018, 0.16483516483516483, 0.9304029304029304, 0.22344322344322345, 0.21062271062271062, 0.2692307692307692, 0.29304029304029305, 0.34615384615384615, 0.31135531135531136, 0.2967032967032967, 0.2765567765567766, 0.2802197802197802, 0.2857142857142857, 0.3076923076923077, 0.2893772893772894, 0.2619047619047619, 0.25824175824175827, 0.23809523809523808, 0.24358974358974358, 0.23809523809523808, 0.24725274725274726, 0.27106227106227104, 0.8956043956043956, 0.9304029304029304, 0.9230769230769231, 0.8205128205128205, 0.24175824175824176, 0.21611721611721613, 0.21611721611721613, 0.1978021978021978, 0.8974358974358975, 0.19597069597069597, 0.19597069597069597, 0.19597069597069597, 0.19597069597069597, 0.19597069597069597, 0.19597069597069597, 0.20695970695970695, 0.21062271062271062, 0.21611721611721613, 0.21978021978021978, 0.21978021978021978, 0.2802197802197802, 0.4175824175824176, 0.521978021978022, 0.6428571428571429, 0.8315018315018315], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Cytochrom_c3_2.gap.json b/pfam_gap_rates/Cytochrom_c3_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..700d8f78a04a99972c227bf7850776ab8e564183
--- /dev/null
+++ b/pfam_gap_rates/Cytochrom_c3_2.gap.json
@@ -0,0 +1 @@
+{"family": "Cytochrom_c3_2", "n_seqs": 309, "length": 150, "gap_rates": [0.7993527508090615, 0.4174757281553398, 0.4045307443365696, 0.343042071197411, 0.2686084142394822, 0.20711974110032363, 0.1941747572815534, 0.11650485436893204, 0.10032362459546926, 0.09385113268608414, 0.09385113268608414, 0.08737864077669903, 0.07766990291262135, 0.07766990291262135, 0.919093851132686, 0.948220064724919, 0.919093851132686, 0.07766990291262135, 0.08737864077669903, 0.08090614886731391, 0.8996763754045307, 0.9449838187702265, 0.8284789644012945, 0.09061488673139159, 0.3106796116504854, 0.32362459546925565, 0.24271844660194175, 0.12944983818770225, 0.9352750809061489, 0.8705501618122977, 0.07766990291262135, 0.042071197411003236, 0.04854368932038835, 0.045307443365695796, 0.042071197411003236, 0.006472491909385114, 0.7443365695792881, 0.7443365695792881, 0.7702265372168284, 0.7864077669902912, 0.8284789644012945, 0.8414239482200647, 0.8478964401294499, 0.889967637540453, 0.941747572815534, 0.948220064724919, 0.9223300970873787, 0.8640776699029126, 0.8478964401294499, 0.8317152103559871, 0.8252427184466019, 0.7799352750809061, 0.7605177993527508, 0.7443365695792881, 0.7443365695792881, 0.006472491909385114, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.003236245954692557, 0.0, 0.0, 0.012944983818770227, 0.006472491909385114, 0.003236245954692557, 0.003236245954692557, 0.02912621359223301, 0.022653721682847898, 0.1779935275080906, 0.3300970873786408, 0.5954692556634305, 0.7087378640776699, 0.7669902912621359, 0.8025889967637541, 0.8284789644012945, 0.8673139158576052, 0.9255663430420712, 0.941747572815534, 0.8932038834951457, 0.8478964401294499, 0.8090614886731392, 0.7799352750809061, 0.7346278317152104, 0.6699029126213593, 0.5372168284789643, 0.12944983818770225, 0.10355987055016182, 0.0744336569579288, 0.04854368932038835, 0.032362459546925564, 0.022653721682847898, 0.019417475728155338, 0.941747572815534, 0.019417475728155338, 0.019417475728155338, 0.9320388349514563, 0.0, 0.8025889967637541, 0.9223300970873787, 0.9449838187702265, 0.9093851132686084, 0.7216828478964401, 0.012944983818770227, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.003236245954692557, 0.016181229773462782, 0.05825242718446602, 0.061488673139158574, 0.7055016181229773, 0.7119741100323624, 0.7475728155339806, 0.8025889967637541, 0.8284789644012945, 0.883495145631068, 0.8964401294498382, 0.8867313915857605, 0.8446601941747572, 0.8252427184466019, 0.7572815533980582, 0.7119741100323624, 0.7119741100323624, 0.7055016181229773, 0.07119741100323625, 0.1650485436893204, 0.1262135922330097, 0.8252427184466019, 0.889967637540453, 0.9288025889967637, 0.9385113268608414, 0.912621359223301, 0.8511326860841424, 0.7799352750809061, 0.12297734627831715, 0.1262135922330097, 0.1262135922330097, 0.1262135922330097, 0.12944983818770225, 0.12944983818770225, 0.12944983818770225, 0.3883495145631068], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/D5_N.gap.json b/pfam_gap_rates/D5_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..6c368ff91417bfa10807fd627ce5f78c491f44c9
--- /dev/null
+++ b/pfam_gap_rates/D5_N.gap.json
@@ -0,0 +1 @@
+{"family": "D5_N", "n_seqs": 388, "length": 210, "gap_rates": [0.6907216494845361, 0.5541237113402062, 0.5051546391752577, 0.46649484536082475, 0.45103092783505155, 0.44587628865979384, 0.42783505154639173, 0.4175257731958763, 0.4252577319587629, 0.41494845360824745, 0.4252577319587629, 0.9432989690721649, 0.3788659793814433, 0.3788659793814433, 0.36082474226804123, 0.35309278350515466, 0.3427835051546392, 0.3324742268041237, 0.32989690721649484, 0.3402061855670103, 0.5541237113402062, 0.31443298969072164, 0.3015463917525773, 0.30412371134020616, 0.9484536082474226, 0.30412371134020616, 0.30412371134020616, 0.2963917525773196, 0.2963917525773196, 0.327319587628866, 0.29381443298969073, 0.2912371134020619, 0.2963917525773196, 0.29381443298969073, 0.43041237113402064, 0.8737113402061856, 0.9072164948453608, 0.9355670103092784, 0.9020618556701031, 0.7371134020618557, 0.3015463917525773, 0.3015463917525773, 0.2912371134020619, 0.2809278350515464, 0.2809278350515464, 0.2757731958762887, 0.27319587628865977, 0.27319587628865977, 0.27319587628865977, 0.27319587628865977, 0.27319587628865977, 0.27319587628865977, 0.2963917525773196, 0.3015463917525773, 0.2963917525773196, 0.2912371134020619, 0.2912371134020619, 0.29381443298969073, 0.27835051546391754, 0.6314432989690721, 0.7087628865979382, 0.7139175257731959, 0.7319587628865979, 0.7422680412371134, 0.7551546391752577, 0.7577319587628866, 0.7912371134020618, 0.8041237113402062, 0.8195876288659794, 0.8273195876288659, 0.8324742268041238, 0.8350515463917526, 0.8505154639175257, 0.8582474226804123, 0.8685567010309279, 0.8711340206185567, 0.8762886597938144, 0.8814432989690721, 0.884020618556701, 0.8788659793814433, 0.8762886597938144, 0.8711340206185567, 0.8608247422680413, 0.8530927835051546, 0.845360824742268, 0.8350515463917526, 0.8273195876288659, 0.8221649484536082, 0.8041237113402062, 0.8015463917525774, 0.7654639175257731, 0.7551546391752577, 0.75, 0.7319587628865979, 0.729381443298969, 0.711340206185567, 0.6984536082474226, 0.6237113402061856, 0.5695876288659794, 0.5463917525773195, 0.5283505154639175, 0.5077319587628866, 0.48195876288659795, 0.4587628865979381, 0.4381443298969072, 0.422680412371134, 0.3634020618556701, 0.34536082474226804, 0.30412371134020616, 0.29381443298969073, 0.28350515463917525, 0.2706185567010309, 0.24484536082474226, 0.20876288659793815, 0.15979381443298968, 0.14690721649484537, 0.13917525773195877, 0.13917525773195877, 0.13402061855670103, 0.12886597938144329, 0.11855670103092783, 0.11855670103092783, 0.11855670103092783, 0.11597938144329897, 0.11597938144329897, 0.1134020618556701, 0.11597938144329897, 0.15979381443298968, 0.22164948453608246, 0.2809278350515464, 0.26288659793814434, 0.5850515463917526, 0.9407216494845361, 0.5541237113402062, 0.10824742268041238, 0.09020618556701031, 0.08247422680412371, 0.07216494845360824, 0.06701030927835051, 0.06701030927835051, 0.059278350515463915, 0.05412371134020619, 0.041237113402061855, 0.04381443298969072, 0.04381443298969072, 0.9432989690721649, 0.04381443298969072, 0.028350515463917526, 0.007731958762886598, 0.005154639175257732, 0.005154639175257732, 0.005154639175257732, 0.005154639175257732, 0.007731958762886598, 0.005154639175257732, 0.005154639175257732, 0.005154639175257732, 0.007731958762886598, 0.005154639175257732, 0.01288659793814433, 0.007731958762886598, 0.8917525773195877, 0.8814432989690721, 0.005154639175257732, 0.005154639175257732, 0.005154639175257732, 0.9458762886597938, 0.9432989690721649, 0.015463917525773196, 0.015463917525773196, 0.9329896907216495, 0.9123711340206185, 0.010309278350515464, 0.005154639175257732, 0.005154639175257732, 0.005154639175257732, 0.005154639175257732, 0.005154639175257732, 0.005154639175257732, 0.005154639175257732, 0.007731958762886598, 0.010309278350515464, 0.010309278350515464, 0.01288659793814433, 0.015463917525773196, 0.015463917525773196, 0.01804123711340206, 0.020618556701030927, 0.03865979381443299, 0.23195876288659795, 0.9432989690721649, 0.9381443298969072, 0.2190721649484536, 0.8943298969072165, 0.08505154639175258, 0.07474226804123711, 0.07731958762886598, 0.08505154639175258, 0.9458762886597938, 0.8273195876288659, 0.08505154639175258, 0.09020618556701031, 0.09278350515463918, 0.09536082474226804, 0.11597938144329897, 0.15463917525773196, 0.2190721649484536, 0.2706185567010309, 0.37628865979381443, 0.7603092783505154], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DAGK_cat.gap.json b/pfam_gap_rates/DAGK_cat.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..261008eac1d347cf02aa8abb9492b9d37391fa9d
--- /dev/null
+++ b/pfam_gap_rates/DAGK_cat.gap.json
@@ -0,0 +1 @@
+{"family": "DAGK_cat", "n_seqs": 4229, "length": 141, "gap_rates": [0.654764719791913, 0.2672026483802317, 0.16244975171435327, 0.1300543863797588, 0.1213052731142114, 0.11610309765902105, 0.11421139749349728, 0.12248758571766374, 0.1213052731142114, 0.12012296051075905, 0.13856703712461574, 0.17167179002128163, 0.1262709860487113, 0.10853629699692599, 0.10380704658311658, 0.09931425868999763, 0.10096949633483093, 0.09931425868999763, 0.09671317096240246, 0.8075195081579569, 0.10569874674864034, 0.09600378340033104, 0.08157956963821235, 0.07850555686923623, 0.07614093166233152, 0.07566800662095058, 0.07543154410026011, 0.07661385670371246, 0.10475289666587846, 0.09198392054859304, 0.08323480728304564, 0.08654528257271223, 0.9240955308583589, 0.2714589737526602, 0.08559943248995035, 0.0650271931898794, 0.05887916765192717, 0.05131236698983211, 0.04800189170016552, 0.05013005438637976, 0.055805154882951055, 0.16363206431780564, 0.052967604634665405, 0.052967604634665405, 0.04445495388980847, 0.9486876330101679, 0.04469141641049894, 0.04469141641049894, 0.04090801607945141, 0.038779853393237175, 0.035469378103570585, 0.032631827855284935, 0.030976590210451644, 0.029794277606999292, 0.02932135256561835, 0.030976590210451644, 0.2899030503665169, 0.9243319933790494, 0.9406479073066919, 0.9077796169307165, 0.21328919366280444, 0.18964294159375739, 0.9347363442894301, 0.02104516434145188, 0.018680539134547175, 0.017498226531094823, 0.015370063844880587, 0.015606526365571057, 0.014660676282809175, 0.014897138803499646, 0.014424213762118705, 0.014187751241428233, 0.014424213762118705, 0.014187751241428233, 0.014424213762118705, 0.014424213762118705, 0.014187751241428233, 0.013951288720737764, 0.014660676282809175, 0.015133601324190116, 0.015606526365571057, 0.016079451406951998, 0.01678883896902341, 0.017498226531094823, 0.6857413100023646, 0.7982974698510286, 0.9047056041617404, 0.7439110900922203, 0.5365334594466777, 0.5091038070465831, 0.37290139512887205, 0.33601324190115867, 0.06360841806573658, 0.028611965003546937, 0.027902577441475528, 0.028375502482856467, 0.027902577441475528, 0.027666114920785054, 0.027429652400094585, 0.026956727358713645, 0.027193189879404115, 0.028139039962165997, 0.02908489004492788, 0.029794277606999292, 0.030740127689761174, 0.030740127689761174, 0.030976590210451644, 0.031922440293213526, 0.032158902813903996, 0.032868290375975405, 0.03475999054149917, 0.03736107826909435, 0.9493970205722393, 0.06029794277606999, 0.06384488058642705, 0.06739181839678411, 0.11421139749349728, 0.928115393710097, 0.7410735398439348, 0.11019153464175928, 0.12816268621423504, 0.13549302435563962, 0.1437692125798061, 0.16197682667297233, 0.1655237644833294, 0.17640104043509103, 0.1830219910144242, 0.1886970915109955, 0.23930007093875622, 0.24544809647670845, 0.27287774887680305, 0.2993615511941357, 0.31780562780799243, 0.3343580042563254, 0.3464175928115394, 0.3591865689288248, 0.37171908252541974, 0.38850792149444313, 0.4145187987703949, 0.5457554977536061, 0.787893118940648], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DAP3.gap.json b/pfam_gap_rates/DAP3.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..5e1da0fe9a7d842c1fc4e8814d9c6e94683fd763
--- /dev/null
+++ b/pfam_gap_rates/DAP3.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DASH_Dad1.gap.json b/pfam_gap_rates/DASH_Dad1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..486e6ab1bb0e634c76076df41c1a12c7004d8f59
--- /dev/null
+++ b/pfam_gap_rates/DASH_Dad1.gap.json
@@ -0,0 +1 @@
+{"family": "DASH_Dad1", "n_seqs": 111, "length": 55, "gap_rates": [0.3153153153153153, 0.07207207207207207, 0.07207207207207207, 0.07207207207207207, 0.06306306306306306, 0.06306306306306306, 0.06306306306306306, 0.06306306306306306, 0.06306306306306306, 0.06306306306306306, 0.06306306306306306, 0.06306306306306306, 0.05405405405405406, 0.05405405405405406, 0.02702702702702703, 0.04504504504504504, 0.036036036036036036, 0.02702702702702703, 0.009009009009009009, 0.009009009009009009, 0.009009009009009009, 0.009009009009009009, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.009009009009009009, 0.018018018018018018, 0.018018018018018018, 0.018018018018018018, 0.018018018018018018, 0.018018018018018018, 0.018018018018018018, 0.018018018018018018, 0.018018018018018018, 0.02702702702702703, 0.02702702702702703, 0.02702702702702703, 0.02702702702702703, 0.02702702702702703, 0.02702702702702703, 0.02702702702702703, 0.04504504504504504, 0.0990990990990991, 0.1981981981981982], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DASH_Spc34.gap.json b/pfam_gap_rates/DASH_Spc34.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..78ecbfa783ce0431d628ed7eb3a843883b8140bb
--- /dev/null
+++ b/pfam_gap_rates/DASH_Spc34.gap.json
@@ -0,0 +1 @@
+{"family": "DASH_Spc34", "n_seqs": 137, "length": 310, "gap_rates": [0.5693430656934306, 0.5328467153284672, 0.45985401459854014, 0.45255474452554745, 0.45255474452554745, 0.45255474452554745, 0.44525547445255476, 0.44525547445255476, 0.44525547445255476, 0.44525547445255476, 0.44525547445255476, 0.43795620437956206, 0.43795620437956206, 0.43795620437956206, 0.4306569343065693, 0.4306569343065693, 0.4306569343065693, 0.4306569343065693, 0.4233576642335766, 0.41605839416058393, 0.41605839416058393, 0.41605839416058393, 0.41605839416058393, 0.41605839416058393, 0.41605839416058393, 0.41605839416058393, 0.41605839416058393, 0.41605839416058393, 0.41605839416058393, 0.41605839416058393, 0.41605839416058393, 0.41605839416058393, 0.41605839416058393, 0.41605839416058393, 0.41605839416058393, 0.41605839416058393, 0.41605839416058393, 0.41605839416058393, 0.41605839416058393, 0.41605839416058393, 0.41605839416058393, 0.41605839416058393, 0.41605839416058393, 0.41605839416058393, 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\ No newline at end of file
diff --git a/pfam_gap_rates/DCB.gap.json b/pfam_gap_rates/DCB.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f89046254f340cad8d8ef3eab963d6ca7ea1b0ec
--- /dev/null
+++ b/pfam_gap_rates/DCB.gap.json
@@ -0,0 +1 @@
+{"family": "DCB", "n_seqs": 734, "length": 255, "gap_rates": [0.9359673024523161, 0.8773841961852861, 0.8542234332425068, 0.8228882833787466, 0.7370572207084468, 0.6948228882833788, 0.6171662125340599, 0.5953678474114441, 0.5517711171662125, 0.5326975476839237, 0.5040871934604905, 0.48637602179836514, 0.47002724795640327, 0.9073569482288828, 0.4604904632152589, 0.4536784741144414, 0.44550408719346046, 0.44005449591280654, 0.43460490463215257, 0.4209809264305177, 0.3978201634877384, 0.36103542234332425, 0.35149863760217986, 0.335149863760218, 0.31471389645776565, 0.3106267029972752, 0.3010899182561308, 0.2970027247956403, 0.28746594005449594, 0.28065395095367845, 0.276566757493188, 0.26975476839237056, 0.26430517711171664, 0.26294277929155313, 0.2574931880108992, 0.2574931880108992, 0.25340599455040874, 0.2506811989100817, 0.24250681198910082, 0.24250681198910082, 0.2452316076294278, 0.24795640326975477, 0.2547683923705722, 0.2656675749318801, 0.26430517711171664, 0.2574931880108992, 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\ No newline at end of file
diff --git a/pfam_gap_rates/DDE_Tnp_IS1.gap.json b/pfam_gap_rates/DDE_Tnp_IS1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..747fb8defcaf0fb00d057d558dc9f8fae76d3b89
--- /dev/null
+++ b/pfam_gap_rates/DDE_Tnp_IS1.gap.json
@@ -0,0 +1 @@
+{"family": "DDE_Tnp_IS1", "n_seqs": 289, "length": 138, "gap_rates": [0.9273356401384083, 0.9204152249134948, 0.9100346020761245, 0.7854671280276817, 0.6747404844290658, 0.6124567474048442, 0.6089965397923875, 0.6089965397923875, 0.6089965397923875, 0.5709342560553633, 0.5709342560553633, 0.5640138408304498, 0.5501730103806228, 0.5397923875432526, 0.5294117647058824, 0.5294117647058824, 0.5363321799307958, 0.5397923875432526, 0.532871972318339, 0.5259515570934256, 0.4982698961937716, 0.39792387543252594, 0.39792387543252594, 0.40484429065743943, 0.4013840830449827, 0.39792387543252594, 0.4013840830449827, 0.38408304498269896, 0.3771626297577855, 0.370242214532872, 0.370242214532872, 0.370242214532872, 0.36678200692041524, 0.34256055363321797, 0.3391003460207612, 0.3391003460207612, 0.33217993079584773, 0.314878892733564, 0.30103806228373703, 0.2975778546712803, 0.2975778546712803, 0.2975778546712803, 0.2906574394463668, 0.3044982698961938, 0.30103806228373703, 0.30103806228373703, 0.2975778546712803, 0.30103806228373703, 0.2906574394463668, 0.2837370242214533, 0.2837370242214533, 0.29411764705882354, 0.2906574394463668, 0.3044982698961938, 0.32525951557093424, 0.3044982698961938, 0.9100346020761245, 0.889273356401384, 0.3044982698961938, 0.2975778546712803, 0.2629757785467128, 0.25951557093425603, 0.2491349480968858, 0.21107266435986158, 0.21107266435986158, 0.21107266435986158, 0.21107266435986158, 0.21107266435986158, 0.21107266435986158, 0.20761245674740483, 0.2041522491349481, 0.21453287197231835, 0.22145328719723184, 0.22837370242214533, 0.23183391003460208, 0.22837370242214533, 0.21453287197231835, 0.21453287197231835, 0.21107266435986158, 0.2041522491349481, 0.9446366782006921, 0.18685121107266436, 0.9377162629757786, 0.17647058823529413, 0.1695501730103806, 0.16608996539792387, 0.16608996539792387, 0.9377162629757786, 0.9273356401384083, 0.16608996539792387, 0.9204152249134948, 0.9204152249134948, 0.15570934256055363, 0.16608996539792387, 0.1522491349480969, 0.1522491349480969, 0.15916955017301038, 0.15916955017301038, 0.15916955017301038, 0.1522491349480969, 0.1522491349480969, 0.15570934256055363, 0.15570934256055363, 0.15570934256055363, 0.15570934256055363, 0.15570934256055363, 0.15916955017301038, 0.15916955017301038, 0.1695501730103806, 0.16608996539792387, 0.1695501730103806, 0.1695501730103806, 0.1695501730103806, 0.17301038062283736, 0.18339100346020762, 0.18339100346020762, 0.18339100346020762, 0.18339100346020762, 0.18339100346020762, 0.2179930795847751, 0.22491349480968859, 0.22837370242214533, 0.23183391003460208, 0.2664359861591695, 0.28719723183391005, 0.3217993079584775, 0.3494809688581315, 0.356401384083045, 0.41522491349480967, 0.47058823529411764, 0.4844290657439446, 0.532871972318339, 0.5847750865051903, 0.7197231833910035, 0.740484429065744, 0.7439446366782007, 0.754325259515571, 0.8685121107266436], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DDE_Tnp_IS1595.gap.json b/pfam_gap_rates/DDE_Tnp_IS1595.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..93d62599ae87957a427a26ea0d6be30206263c2a
--- /dev/null
+++ b/pfam_gap_rates/DDE_Tnp_IS1595.gap.json
@@ -0,0 +1 @@
+{"family": "DDE_Tnp_IS1595", "n_seqs": 1395, "length": 166, "gap_rates": [0.931899641577061, 0.7584229390681003, 0.7111111111111111, 0.6637992831541218, 0.5225806451612903, 0.45089605734767024, 0.4437275985663082, 0.44014336917562724, 0.4351254480286738, 0.42867383512544804, 0.4258064516129032, 0.4243727598566308, 0.421505376344086, 0.4136200716845878, 0.4114695340501792, 0.4157706093189964, 0.4164874551971326, 0.8329749103942652, 0.8293906810035843, 0.8193548387096774, 0.7949820788530466, 0.7870967741935484, 0.782078853046595, 0.7634408602150538, 0.7297491039426524, 0.6559139784946236, 0.5483870967741935, 0.35125448028673834, 0.3419354838709677, 0.35125448028673834, 0.35125448028673834, 0.35770609318996416, 0.36845878136200716, 0.9390681003584229, 0.9455197132616487, 0.9405017921146953, 0.9369175627240144, 0.5548387096774193, 0.9197132616487456, 0.8802867383512545, 0.2982078853046595, 0.2910394265232975, 0.2838709677419355, 0.27025089605734764, 0.26093189964157704, 0.2523297491039427, 0.24659498207885305, 0.24301075268817204, 0.23297491039426524, 0.22580645161290322, 0.22365591397849463, 0.22078853046594982, 0.5218637992831541, 0.9039426523297491, 0.9455197132616487, 0.8838709677419355, 0.45232974910394264, 0.45089605734767024, 0.3727598566308244, 0.35985663082437275, 0.16559139784946236, 0.16129032258064516, 0.15197132616487455, 0.14910394265232976, 0.14408602150537633, 0.12544802867383512, 0.11756272401433691, 0.13333333333333333, 0.11971326164874552, 0.10465949820788531, 0.1025089605734767, 0.1003584229390681, 0.0974910394265233, 0.0953405017921147, 0.0931899641577061, 0.09247311827956989, 0.08960573476702509, 0.08530465949820788, 0.08243727598566308, 0.07741935483870968, 0.07240143369175628, 0.06881720430107527, 0.06379928315412187, 0.056630824372759854, 0.05089605734767025, 0.044444444444444446, 0.04516129032258064, 0.04157706093189964, 0.03942652329749104, 0.03369175627240143, 0.034408602150537634, 0.03512544802867384, 0.03727598566308244, 0.03942652329749104, 0.045878136200716846, 0.04802867383512545, 0.044444444444444446, 0.047311827956989246, 0.05089605734767025, 0.053763440860215055, 0.060215053763440864, 0.060215053763440864, 0.06236559139784946, 0.9168458781362007, 0.8, 0.2064516129032258, 0.08817204301075268, 0.07956989247311828, 0.07741935483870968, 0.07741935483870968, 0.07670250896057347, 0.07526881720430108, 0.07455197132616488, 0.07956989247311828, 0.08243727598566308, 0.09462365591397849, 0.11254480286738351, 0.12186379928315412, 0.15053763440860216, 0.16057347670250896, 0.9247311827956989, 0.5706093189964158, 0.2745519713261649, 0.15842293906810037, 0.13835125448028673, 0.12831541218637993, 0.11971326164874552, 0.11756272401433691, 0.11899641577060932, 0.12186379928315412, 0.12473118279569892, 0.13118279569892474, 0.13763440860215054, 0.14480286738351256, 0.14982078853046596, 0.15412186379928317, 0.16057347670250896, 0.16415770609318997, 0.16989247311827957, 0.19426523297491038, 0.22724014336917564, 0.23799283154121864, 0.2752688172043011, 0.6100358422939068, 0.36630824372759857, 0.35985663082437275, 0.35985663082437275, 0.36774193548387096, 0.38064516129032255, 0.45017921146953405, 0.4014336917562724, 0.3956989247311828, 0.3985663082437276, 0.4, 0.403584229390681, 0.40931899641577063, 0.4136200716845878, 0.4100358422939068, 0.4344086021505376, 0.44516129032258067, 0.45232974910394264, 0.46953405017921146, 0.4745519713261649, 0.513978494623656, 0.6078853046594982, 0.7154121863799283], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DDT.gap.json b/pfam_gap_rates/DDT.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d9a9da6ab5d153d6464947c3fcdfe2b5b5a6993f
--- /dev/null
+++ b/pfam_gap_rates/DDT.gap.json
@@ -0,0 +1 @@
+{"family": "DDT", "n_seqs": 630, "length": 67, "gap_rates": [0.7682539682539683, 0.3761904761904762, 0.20634920634920634, 0.16666666666666666, 0.10634920634920635, 0.07936507936507936, 0.05714285714285714, 0.007936507936507936, 0.0015873015873015873, 0.0015873015873015873, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.7746031746031746, 0.834920634920635, 0.8920634920634921, 0.7777777777777778, 0.7126984126984127, 0.0015873015873015873, 0.004761904761904762, 0.004761904761904762, 0.006349206349206349, 0.0031746031746031746, 0.0031746031746031746, 0.0031746031746031746, 0.0031746031746031746, 0.0031746031746031746, 0.004761904761904762, 0.006349206349206349, 0.006349206349206349, 0.007936507936507936, 0.09047619047619047, 0.0873015873015873, 0.011111111111111112, 0.14126984126984127, 0.5111111111111111, 0.5285714285714286, 0.49523809523809526, 0.9476190476190476, 0.9253968253968254, 0.25555555555555554, 0.23174603174603176, 0.2253968253968254, 0.03015873015873016, 0.03015873015873016, 0.031746031746031744, 0.031746031746031744, 0.03333333333333333, 0.03968253968253968, 0.04126984126984127, 0.04285714285714286, 0.047619047619047616, 0.05238095238095238, 0.06666666666666667, 0.08412698412698413, 0.23809523809523808, 0.39365079365079364, 0.6206349206349207], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DEAD.gap.json b/pfam_gap_rates/DEAD.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b01090c5a580a4c154ff482d08713e3341adc6b8
--- /dev/null
+++ b/pfam_gap_rates/DEAD.gap.json
@@ -0,0 +1 @@
+{"family": "DEAD", "n_seqs": 5000, "length": 221, "gap_rates": [0.6636, 0.3752, 0.276, 0.219, 0.1944, 0.1722, 0.1566, 0.1458, 0.1374, 0.1258, 0.1178, 0.1146, 0.9282, 0.95, 0.9422, 0.8582, 0.1122, 0.099, 0.9356, 0.9326, 0.0758, 0.0644, 0.0568, 0.0452, 0.0406, 0.0392, 0.0376, 0.0364, 0.0362, 0.0358, 0.0342, 0.0336, 0.0334, 0.033, 0.0322, 0.032, 0.041, 0.0408, 0.0336, 0.0346, 0.0344, 0.0346, 0.1616, 0.1476, 0.093, 0.4436, 0.5188, 0.709, 0.8192, 0.875, 0.9376, 0.9152, 0.8552, 0.7572, 0.6764, 0.5274, 0.443, 0.325, 0.1056, 0.068, 0.0464, 0.0596, 0.0296, 0.029, 0.0284, 0.0286, 0.0272, 0.0274, 0.0268, 0.0268, 0.027, 0.027, 0.027, 0.027, 0.0264, 0.0264, 0.0266, 0.0274, 0.0292, 0.0314, 0.0324, 0.0342, 0.0352, 0.0352, 0.0368, 0.038, 0.0852, 0.865, 0.174, 0.1614, 0.8996, 0.9404, 0.9466, 0.9292, 0.8436, 0.1898, 0.1158, 0.0856, 0.1002, 0.9272, 0.1112, 0.0932, 0.0746, 0.0678, 0.9492, 0.9192, 0.0856, 0.0714, 0.0664, 0.0608, 0.1242, 0.1084, 0.0908, 0.093, 0.088, 0.0898, 0.0748, 0.9474, 0.931, 0.2368, 0.941, 0.1022, 0.0714, 0.947, 0.7332, 0.0542, 0.0496, 0.0464, 0.0438, 0.0398, 0.04, 0.0402, 0.0406, 0.0416, 0.0416, 0.0418, 0.0426, 0.047, 0.9324, 0.099, 0.1098, 0.826, 0.9092, 0.9476, 0.8818, 0.722, 0.1374, 0.235, 0.2068, 0.1808, 0.2694, 0.1752, 0.9362, 0.9032, 0.0488, 0.049, 0.0474, 0.0474, 0.048, 0.0478, 0.047, 0.0472, 0.0474, 0.0476, 0.0476, 0.0472, 0.048, 0.0488, 0.0492, 0.0502, 0.0512, 0.0602, 0.8924, 0.8482, 0.3202, 0.1494, 0.0652, 0.064, 0.0644, 0.065, 0.0668, 0.0688, 0.1578, 0.0888, 0.0788, 0.0786, 0.0806, 0.5316, 0.6296, 0.6176, 0.6064, 0.59, 0.5882, 0.603, 0.2864, 0.9312, 0.3828, 0.3364, 0.9468, 0.9492, 0.9496, 0.9482, 0.9466, 0.3492, 0.285, 0.0862, 0.0856, 0.0858, 0.086, 0.087, 0.0888, 0.0912, 0.0968, 0.1122, 0.8216, 0.3284, 0.417, 0.5078, 0.6436, 0.761, 0.9052], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DEAD_assoc.gap.json b/pfam_gap_rates/DEAD_assoc.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..6596965fb6ec4be4aa21b1904cf71753995a0590
--- /dev/null
+++ b/pfam_gap_rates/DEAD_assoc.gap.json
@@ -0,0 +1 @@
+{"family": "DEAD_assoc", "n_seqs": 651, "length": 236, "gap_rates": [0.06912442396313365, 0.041474654377880185, 0.03225806451612903, 0.029185867895545316, 0.026113671274961597, 0.02457757296466974, 0.02304147465437788, 0.021505376344086023, 0.019969278033794162, 0.018433179723502304, 0.018433179723502304, 0.018433179723502304, 0.8540706605222734, 0.7127496159754224, 0.021505376344086023, 0.04915514592933948, 0.2565284178187404, 0.22734254992319508, 0.3763440860215054, 0.2227342549923195, 0.1966205837173579, 0.01228878648233487, 0.007680491551459293, 0.006144393241167435, 0.006144393241167435, 0.006144393241167435, 0.006144393241167435, 0.006144393241167435, 0.006144393241167435, 0.006144393241167435, 0.006144393241167435, 0.006144393241167435, 0.006144393241167435, 0.006144393241167435, 0.006144393241167435, 0.006144393241167435, 0.006144393241167435, 0.006144393241167435, 0.006144393241167435, 0.006144393241167435, 0.006144393241167435, 0.006144393241167435, 0.006144393241167435, 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\ No newline at end of file
diff --git a/pfam_gap_rates/DGF-1_C.gap.json b/pfam_gap_rates/DGF-1_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..5ec899cb93865a1711493057441bdbb4705ae869
--- /dev/null
+++ b/pfam_gap_rates/DGF-1_C.gap.json
@@ -0,0 +1 @@
+{"family": "DGF-1_C", "n_seqs": 224, "length": 87, "gap_rates": [0.013392857142857142, 0.004464285714285714, 0.004464285714285714, 0.004464285714285714, 0.004464285714285714, 0.004464285714285714, 0.004464285714285714, 0.004464285714285714, 0.004464285714285714, 0.004464285714285714, 0.004464285714285714, 0.004464285714285714, 0.004464285714285714, 0.004464285714285714, 0.004464285714285714, 0.004464285714285714, 0.004464285714285714, 0.004464285714285714, 0.004464285714285714, 0.004464285714285714, 0.004464285714285714, 0.004464285714285714, 0.004464285714285714, 0.004464285714285714, 0.004464285714285714, 0.004464285714285714, 0.008928571428571428, 0.013392857142857142, 0.008928571428571428, 0.017857142857142856, 0.008928571428571428, 0.05357142857142857, 0.008928571428571428, 0.008928571428571428, 0.008928571428571428, 0.008928571428571428, 0.008928571428571428, 0.008928571428571428, 0.008928571428571428, 0.008928571428571428, 0.008928571428571428, 0.022321428571428572, 0.013392857142857142, 0.013392857142857142, 0.013392857142857142, 0.017857142857142856, 0.022321428571428572, 0.022321428571428572, 0.017857142857142856, 0.017857142857142856, 0.017857142857142856, 0.049107142857142856, 0.017857142857142856, 0.017857142857142856, 0.017857142857142856, 0.022321428571428572, 0.022321428571428572, 0.022321428571428572, 0.022321428571428572, 0.35714285714285715, 0.20089285714285715, 0.1875, 0.19196428571428573, 0.19196428571428573, 0.19642857142857142, 0.19642857142857142, 0.20982142857142858, 0.21428571428571427, 0.21875, 0.21875, 0.21875, 0.21875, 0.21875, 0.21875, 0.21875, 0.21875, 0.21875, 0.21875, 0.21875, 0.21875, 0.21875, 0.21875, 0.24553571428571427, 0.2857142857142857, 0.30357142857142855, 0.3080357142857143, 0.39285714285714285], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DHBP_synthase.gap.json b/pfam_gap_rates/DHBP_synthase.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..cda1d4c4733ceb9862654395b81bcf0ca8811efa
--- /dev/null
+++ b/pfam_gap_rates/DHBP_synthase.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DHODB_Fe-S_bind.gap.json b/pfam_gap_rates/DHODB_Fe-S_bind.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..fe55e8d91b2a5fd506f53179fec2c51c09500327
--- /dev/null
+++ b/pfam_gap_rates/DHODB_Fe-S_bind.gap.json
@@ -0,0 +1 @@
+{"family": "DHODB_Fe-S_bind", "n_seqs": 1755, "length": 45, "gap_rates": [0.30142450142450145, 0.03361823361823362, 0.010826210826210826, 0.007977207977207978, 0.002849002849002849, 0.0011396011396011395, 0.0005698005698005698, 0.0005698005698005698, 0.0005698005698005698, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.21937321937321938, 0.2205128205128205, 0.36524216524216524, 0.7715099715099715, 0.7658119658119659, 0.7686609686609687, 0.9230769230769231, 0.9407407407407408, 0.8575498575498576, 0.5971509971509972, 0.24045584045584045, 0.002279202279202279, 0.003418803418803419, 0.002849002849002849, 0.002849002849002849, 0.002849002849002849, 0.002849002849002849, 0.003418803418803419, 0.003418803418803419, 0.003418803418803419, 0.003988603988603989, 0.005698005698005698, 0.014814814814814815, 0.038176638176638175, 0.07863247863247863, 0.11908831908831909, 0.7595441595441595], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DKNYY.gap.json b/pfam_gap_rates/DKNYY.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ae9900709c1bee39d19f32df40aa9d7fbcb8e9aa
--- /dev/null
+++ b/pfam_gap_rates/DKNYY.gap.json
@@ -0,0 +1 @@
+{"family": "DKNYY", "n_seqs": 327, "length": 231, "gap_rates": [0.5688073394495413, 0.5382262996941896, 0.4984709480122324, 0.4648318042813456, 0.4434250764525994, 0.43730886850152906, 0.42813455657492355, 0.42201834862385323, 0.41896024464831805, 0.41590214067278286, 0.41284403669724773, 0.9327217125382263, 0.3944954128440367, 0.37003058103975534, 0.8807339449541285, 0.9235474006116208, 0.9357798165137615, 0.9021406727828746, 0.8685015290519877, 0.3577981651376147, 0.3394495412844037, 0.36085626911314983, 0.3119266055045872, 0.3119266055045872, 0.308868501529052, 0.308868501529052, 0.3058103975535168, 0.30275229357798167, 0.30275229357798167, 0.2996941896024465, 0.30275229357798167, 0.2966360856269113, 0.29357798165137616, 0.8256880733944955, 0.8776758409785933, 0.9021406727828746, 0.944954128440367, 0.8899082568807339, 0.8623853211009175, 0.7889908256880734, 0.2874617737003058, 0.2874617737003058, 0.28440366972477066, 0.28134556574923547, 0.28134556574923547, 0.28134556574923547, 0.28440366972477066, 0.28134556574923547, 0.2782874617737003, 0.2782874617737003, 0.2782874617737003, 0.944954128440367, 0.9418960244648318, 0.290519877675841, 0.290519877675841, 0.2966360856269113, 0.290519877675841, 0.290519877675841, 0.2996941896024465, 0.29357798165137616, 0.3241590214067278, 0.3211009174311927, 0.3180428134556575, 0.3333333333333333, 0.4954128440366973, 0.4831804281345566, 0.4954128440366973, 0.5749235474006116, 0.5779816513761468, 0.5718654434250765, 0.7920489296636085, 0.8165137614678899, 0.8318042813455657, 0.8532110091743119, 0.8715596330275229, 0.8929663608562691, 0.9021406727828746, 0.9113149847094801, 0.9174311926605505, 0.9235474006116208, 0.9418960244648318, 0.9480122324159022, 0.944954128440367, 0.9235474006116208, 0.9204892966360856, 0.9174311926605505, 0.9113149847094801, 0.8990825688073395, 0.8807339449541285, 0.8654434250764526, 0.8409785932721713, 0.8195718654434251, 0.8042813455657493, 0.7706422018348624, 0.4954128440366973, 0.6207951070336392, 0.6116207951070336, 0.6605504587155964, 0.6269113149847095, 0.5871559633027523, 0.5290519877675841, 0.5259938837920489, 0.5015290519877675, 0.36085626911314983, 0.7553516819571865, 0.8042813455657493, 0.8379204892966361, 0.8593272171253823, 0.908256880733945, 0.9296636085626911, 0.944954128440367, 0.9480122324159022, 0.9357798165137615, 0.9235474006116208, 0.8807339449541285, 0.8409785932721713, 0.8134556574923547, 0.7798165137614679, 0.7370030581039755, 0.3241590214067278, 0.3363914373088685, 0.3333333333333333, 0.3333333333333333, 0.3333333333333333, 0.3211009174311927, 0.3180428134556575, 0.30275229357798167, 0.8501529051987767, 0.8837920489296636, 0.908256880733945, 0.9204892966360856, 0.9357798165137615, 0.9418960244648318, 0.9480122324159022, 0.944954128440367, 0.9418960244648318, 0.926605504587156, 0.9143730886850153, 0.8868501529051988, 0.8685015290519877, 0.8409785932721713, 0.7217125382262997, 0.6574923547400612, 0.6299694189602446, 0.599388379204893, 0.5596330275229358, 0.5474006116207951, 0.5412844036697247, 0.5168195718654435, 0.3516819571865443, 0.3241590214067278, 0.30275229357798167, 0.2691131498470948, 0.25688073394495414, 0.24464831804281345, 0.2415902140672783, 0.23853211009174313, 0.23853211009174313, 0.23853211009174313, 0.25382262996941896, 0.2324159021406728, 0.22935779816513763, 0.22324159021406728, 0.22018348623853212, 0.22018348623853212, 0.22018348623853212, 0.9480122324159022, 0.8348623853211009, 0.23547400611620795, 0.23547400611620795, 0.22629969418960244, 0.8440366972477065, 0.8899082568807339, 0.9296636085626911, 0.9480122324159022, 0.9388379204892966, 0.908256880733945, 0.8776758409785933, 0.8348623853211009, 0.20795107033639143, 0.2018348623853211, 0.2018348623853211, 0.2018348623853211, 0.2018348623853211, 0.2018348623853211, 0.2018348623853211, 0.2018348623853211, 0.2018348623853211, 0.21406727828746178, 0.21712538226299694, 0.21712538226299694, 0.9051987767584098, 0.9296636085626911, 0.9418960244648318, 0.9143730886850153, 0.8807339449541285, 0.22935779816513763, 0.22629969418960244, 0.22935779816513763, 0.23853211009174313, 0.2415902140672783, 0.2415902140672783, 0.2415902140672783, 0.23853211009174313, 0.2415902140672783, 0.2415902140672783, 0.24770642201834864, 0.25076452599388377, 0.25688073394495414, 0.27217125382262997, 0.7706422018348624, 0.8960244648318043, 0.9296636085626911, 0.8532110091743119, 0.7003058103975535, 0.2782874617737003, 0.29357798165137616, 0.3058103975535168, 0.3058103975535168, 0.308868501529052, 0.3119266055045872, 0.3180428134556575, 0.3333333333333333, 0.3425076452599388, 0.3516819571865443, 0.3547400611620795, 0.3547400611620795, 0.3853211009174312, 0.47706422018348627, 0.6330275229357798, 0.8899082568807339], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DLD.gap.json b/pfam_gap_rates/DLD.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..7b55ab1b01dfdf2340bf8e2b4157791a650cf859
--- /dev/null
+++ b/pfam_gap_rates/DLD.gap.json
@@ -0,0 +1 @@
+{"family": "DLD", "n_seqs": 305, "length": 134, "gap_rates": [0.12459016393442623, 0.036065573770491806, 0.01639344262295082, 0.01639344262295082, 0.01639344262295082, 0.01639344262295082, 0.013114754098360656, 0.013114754098360656, 0.013114754098360656, 0.013114754098360656, 0.013114754098360656, 0.013114754098360656, 0.013114754098360656, 0.013114754098360656, 0.013114754098360656, 0.013114754098360656, 0.013114754098360656, 0.013114754098360656, 0.013114754098360656, 0.013114754098360656, 0.013114754098360656, 0.013114754098360656, 0.013114754098360656, 0.013114754098360656, 0.9344262295081968, 0.9344262295081968, 0.9377049180327869, 0.9475409836065574, 0.9442622950819672, 0.9344262295081968, 0.9344262295081968, 0.9311475409836065, 0.009836065573770493, 0.8655737704918033, 0.898360655737705, 0.9147540983606557, 0.8819672131147541, 0.839344262295082, 0.013114754098360656, 0.029508196721311476, 0.10491803278688525, 0.04262295081967213, 0.02622950819672131, 0.3540983606557377, 0.521311475409836, 0.7213114754098361, 0.7573770491803279, 0.7508196721311475, 0.659016393442623, 0.4131147540983607, 0.2786885245901639, 0.02622950819672131, 0.019672131147540985, 0.013114754098360656, 0.013114754098360656, 0.013114754098360656, 0.013114754098360656, 0.013114754098360656, 0.013114754098360656, 0.013114754098360656, 0.013114754098360656, 0.01639344262295082, 0.019672131147540985, 0.009836065573770493, 0.8, 0.9344262295081968, 0.9475409836065574, 0.9442622950819672, 0.9311475409836065, 0.5704918032786885, 0.4819672131147541, 0.006557377049180328, 0.006557377049180328, 0.006557377049180328, 0.006557377049180328, 0.003278688524590164, 0.003278688524590164, 0.003278688524590164, 0.003278688524590164, 0.003278688524590164, 0.006557377049180328, 0.006557377049180328, 0.006557377049180328, 0.006557377049180328, 0.006557377049180328, 0.006557377049180328, 0.009836065573770493, 0.009836065573770493, 0.009836065573770493, 0.09836065573770492, 0.11475409836065574, 0.09836065573770492, 0.03278688524590164, 0.009836065573770493, 0.009836065573770493, 0.009836065573770493, 0.009836065573770493, 0.009836065573770493, 0.009836065573770493, 0.009836065573770493, 0.009836065573770493, 0.009836065573770493, 0.009836065573770493, 0.009836065573770493, 0.009836065573770493, 0.009836065573770493, 0.009836065573770493, 0.009836065573770493, 0.009836065573770493, 0.009836065573770493, 0.009836065573770493, 0.009836065573770493, 0.009836065573770493, 0.013114754098360656, 0.013114754098360656, 0.009836065573770493, 0.009836065573770493, 0.013114754098360656, 0.009836065573770493, 0.013114754098360656, 0.01639344262295082, 0.019672131147540985, 0.022950819672131147, 0.022950819672131147, 0.022950819672131147, 0.022950819672131147, 0.02622950819672131, 0.029508196721311476, 0.029508196721311476, 0.036065573770491806, 0.04918032786885246, 0.04918032786885246, 0.09508196721311475, 0.8721311475409836], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DLH.gap.json b/pfam_gap_rates/DLH.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..eaa7f40cbe96407eff8e7fcd2c794c88c94594b3
--- /dev/null
+++ b/pfam_gap_rates/DLH.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DMT_YdcZ.gap.json b/pfam_gap_rates/DMT_YdcZ.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..37c30bf7a7b82f3fd13ebf75de7b43279380a677
--- /dev/null
+++ b/pfam_gap_rates/DMT_YdcZ.gap.json
@@ -0,0 +1 @@
+{"family": "DMT_YdcZ", "n_seqs": 885, "length": 148, "gap_rates": [0.8858757062146893, 0.42033898305084744, 0.12994350282485875, 0.07909604519774012, 0.05423728813559322, 0.0519774011299435, 0.0519774011299435, 0.04971751412429379, 0.04858757062146893, 0.04858757062146893, 0.04180790960451977, 0.03954802259887006, 0.03502824858757062, 0.03389830508474576, 0.0327683615819209, 0.031638418079096044, 0.030508474576271188, 0.02937853107344633, 0.02598870056497175, 0.02598870056497175, 0.02598870056497175, 0.02598870056497175, 0.024858757062146894, 0.023728813559322035, 0.023728813559322035, 0.023728813559322035, 0.02824858757062147, 0.023728813559322035, 0.4610169491525424, 0.021468926553672316, 0.020338983050847456, 0.020338983050847456, 0.020338983050847456, 0.020338983050847456, 0.020338983050847456, 0.020338983050847456, 0.0192090395480226, 0.0192090395480226, 0.0192090395480226, 0.0192090395480226, 0.01807909604519774, 0.0192090395480226, 0.0192090395480226, 0.01807909604519774, 0.01807909604519774, 0.01807909604519774, 0.01807909604519774, 0.01807909604519774, 0.0192090395480226, 0.01807909604519774, 0.0192090395480226, 0.0192090395480226, 0.0192090395480226, 0.01807909604519774, 0.0711864406779661, 0.752542372881356, 0.9084745762711864, 0.9378531073446328, 0.8824858757062147, 0.5175141242937853, 0.32655367231638416, 0.05649717514124294, 0.04519774011299435, 0.03954802259887006, 0.03389830508474576, 0.031638418079096044, 0.0327683615819209, 0.927683615819209, 0.9468926553672317, 0.9412429378531073, 0.9163841807909604, 0.02598870056497175, 0.023728813559322035, 0.021468926553672316, 0.020338983050847456, 0.021468926553672316, 0.0192090395480226, 0.01807909604519774, 0.01694915254237288, 0.01694915254237288, 0.01694915254237288, 0.01694915254237288, 0.01694915254237288, 0.01694915254237288, 0.01694915254237288, 0.015819209039548022, 0.01694915254237288, 0.015819209039548022, 0.015819209039548022, 0.014689265536723164, 0.014689265536723164, 0.014689265536723164, 0.014689265536723164, 0.013559322033898305, 0.013559322033898305, 0.013559322033898305, 0.012429378531073447, 0.011299435028248588, 0.010169491525423728, 0.010169491525423728, 0.010169491525423728, 0.010169491525423728, 0.010169491525423728, 0.010169491525423728, 0.010169491525423728, 0.011299435028248588, 0.011299435028248588, 0.012429378531073447, 0.013559322033898305, 0.013559322033898305, 0.014689265536723164, 0.014689265536723164, 0.014689265536723164, 0.014689265536723164, 0.014689265536723164, 0.014689265536723164, 0.014689265536723164, 0.014689265536723164, 0.014689265536723164, 0.021468926553672316, 0.09265536723163842, 0.14915254237288136, 0.1016949152542373, 0.09491525423728814, 0.0847457627118644, 0.06327683615819209, 0.04180790960451977, 0.03728813559322034, 0.031638418079096044, 0.031638418079096044, 0.03728813559322034, 0.0384180790960452, 0.031638418079096044, 0.030508474576271188, 0.02937853107344633, 0.02937853107344633, 0.02937853107344633, 0.02937853107344633, 0.030508474576271188, 0.030508474576271188, 0.030508474576271188, 0.031638418079096044, 0.0327683615819209, 0.03615819209039548, 0.04067796610169491, 0.04519774011299435, 0.12768361581920903, 0.5242937853107345], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DNA_gyraseB.gap.json b/pfam_gap_rates/DNA_gyraseB.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..4f117c8144c2c6cfe0a66f7152e283533d103f23
--- /dev/null
+++ b/pfam_gap_rates/DNA_gyraseB.gap.json
@@ -0,0 +1 @@
+{"family": "DNA_gyraseB", "n_seqs": 4127, "length": 190, "gap_rates": [0.1780954688635813, 0.14829173733947176, 0.13399563847831356, 0.12793796946934818, 0.12551490186576206, 0.12503028834504482, 0.1245456748243276, 0.12406106130361037, 0.12357644778289315, 0.12309183426217592, 0.1228495275018173, 0.12212260722074146, 0.217833777562394, 0.9399079234310638, 0.1560455536709474, 0.13932638720620305, 0.12527259510540345, 0.9433002180760843, 0.9483886600436152, 0.9399079234310638, 0.14489944269445118, 0.13593409256118247, 0.2401259995153865, 0.9474194330021808, 0.93530409498425, 0.12551490186576206, 0.11509571117034165, 0.11339956384783136, 0.11121880300460382, 0.10928034892173491, 0.10637266779743154, 0.10637266779743154, 0.11024957596316937, 0.8112430336806397, 0.7681124303368064, 0.9311848800581536, 0.9469348194814635, 0.9362733220256845, 0.9222195299248849, 0.10540344075599709, 0.13956869396656166, 0.7685970438575236, 0.8987157741700993, 0.8657620547613278, 0.6341167918584929, 0.04409983038526775, 0.029803731524109523, 0.027380663920523383, 0.02665374363944754, 0.026169130118730313, 0.0259268233583717, 0.025199903077295856, 0.11727647201356918, 0.11679185849285195, 0.10806881511994185, 0.9445117518778774, 0.03755754785558517, 0.05669978192391568, 0.02180760843227526, 0.021080688151199418, 0.01889992730797189, 0.9137387933123334, 0.016719166464744365, 0.016234552944027137, 0.015507632662951297, 0.01574993942330991, 0.015265325902592683, 0.015265325902592683, 0.015023019142234069, 0.015265325902592683, 0.015023019142234069, 0.015023019142234069, 0.015023019142234069, 0.015023019142234069, 0.01647685970438575, 0.01453840562151684, 0.014296098861158226, 0.01453840562151684, 0.01453840562151684, 0.01453840562151684, 0.01453840562151684, 0.014780712381875455, 0.014780712381875455, 0.014780712381875455, 0.015023019142234069, 0.015023019142234069, 0.01453840562151684, 0.014296098861158226, 0.014296098861158226, 0.01453840562151684, 0.014053792100799612, 0.014296098861158226, 0.014296098861158226, 0.014296098861158226, 0.014296098861158226, 0.014053792100799612, 0.014053792100799612, 0.059607463048219046, 0.06833050642112914, 0.0780227768354737, 0.21056457475163556, 0.16598013084565058, 0.1366610128422583, 0.10079961230918343, 0.09837654470559729, 0.26047976738551004, 0.025684516598013084, 0.01696147322510298, 0.015023019142234069, 0.015023019142234069, 0.014296098861158226, 0.013569178580082384, 0.01332687181972377, 0.012842258299006542, 0.012599951538647928, 0.012357644778289314, 0.011873031257572086, 0.011630724497213472, 0.0121153380179307, 0.012599951538647928, 0.012599951538647928, 0.012599951538647928, 0.012599951538647928, 0.0121153380179307, 0.0121153380179307, 0.011630724497213472, 0.011388417736854858, 0.011388417736854858, 0.9173733947177126, 0.9173733947177126, 0.011873031257572086, 0.0121153380179307, 0.012357644778289314, 0.012357644778289314, 0.012357644778289314, 0.012357644778289314, 0.012599951538647928, 0.01332687181972377, 0.013084565059365156, 0.013084565059365156, 0.012842258299006542, 0.015023019142234069, 0.013811485340440998, 0.01696147322510298, 0.018657620547613277, 0.019626847589047734, 0.022534528713351102, 0.023503755754785558, 0.024472982796220014, 0.02471528955657863, 0.02834989096195784, 0.027622970680881997, 0.026411436879088927, 0.02544220983765447, 0.024957596316937242, 0.025684516598013084, 0.02544220983765447, 0.026411436879088927, 0.02665374363944754, 0.02713835716016477, 0.02786527744124061, 0.028107584201599225, 0.028834504482675067, 0.11679185849285195, 0.034892173491640414, 0.033196026169130116, 0.03392294645020596, 0.03416525321056457, 0.03271141264841289, 0.0329537194087715, 0.03271141264841289, 0.0329537194087715, 0.03392294645020596, 0.034407559970923186, 0.034407559970923186, 0.03537678701235764, 0.0363460140537921, 0.03683062757450933, 0.03828446813666101, 0.03925369517809547, 0.04070753574024715, 0.04240368306275745, 0.04603828446813666, 0.05912284952750182, 0.10225345287133511, 0.13641870608189968, 0.1679185849285195, 0.22049915192633873, 0.2522413375333172, 0.28689120426459896], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DNA_gyraseB_C.gap.json b/pfam_gap_rates/DNA_gyraseB_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..77b11fbfe9d27f3cd1ee1a6b1c17042ac10464fa
--- /dev/null
+++ b/pfam_gap_rates/DNA_gyraseB_C.gap.json
@@ -0,0 +1 @@
+{"family": "DNA_gyraseB_C", "n_seqs": 3527, "length": 65, "gap_rates": [0.41876949248653245, 0.18542670825063792, 0.12078253473206692, 0.052452509214629996, 0.013892826764956054, 0.005103487383045081, 0.004819960306209243, 0.00396937907570173, 0.00396937907570173, 0.00396937907570173, 0.00396937907570173, 0.00396937907570173, 0.00396937907570173, 0.001701162461015027, 0.001701162461015027, 0.001701162461015027, 0.001701162461015027, 0.001701162461015027, 0.001701162461015027, 0.001701162461015027, 0.002835270768358378, 0.03232208675928551, 0.02466685568471789, 0.0008505812305075135, 0.0008505812305075135, 0.001701162461015027, 0.0011341083073433513, 0.001701162461015027, 0.001984689537850865, 0.010206974766090162, 0.0031187978451942162, 0.002835270768358378, 0.002835270768358378, 0.002835270768358378, 0.002835270768358378, 0.002835270768358378, 0.005670541536716756, 0.004536433229373405, 0.003402324922030054, 0.8925432378792174, 0.8877232775730082, 0.004536433229373405, 0.004536433229373405, 0.0042529061525375675, 0.0042529061525375675, 0.004536433229373405, 0.004536433229373405, 0.004536433229373405, 0.004819960306209243, 0.004819960306209243, 0.004819960306209243, 0.005103487383045081, 0.005387014459880919, 0.005954068613552594, 0.005954068613552594, 0.9106889707967111, 0.0062375956903884325, 0.0062375956903884325, 0.0062375956903884325, 0.0062375956903884325, 0.00652112276722427, 0.00652112276722427, 0.007088176920895945, 0.007655231074567621, 0.2398639070031188], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DNA_ligase_A_N.gap.json b/pfam_gap_rates/DNA_ligase_A_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..9f8aefed63115313cbaaf3242779e18c6a00a3b2
--- /dev/null
+++ b/pfam_gap_rates/DNA_ligase_A_N.gap.json
@@ -0,0 +1 @@
+{"family": "DNA_ligase_A_N", "n_seqs": 1447, "length": 222, "gap_rates": [0.5784381478921907, 0.35176226675881134, 0.32411886662059436, 0.17829993089149965, 0.16102280580511402, 0.1575673807878369, 0.15480304077401522, 0.15411195577055978, 0.1520387007601935, 0.15065653075328264, 0.15065653075328264, 0.14858327574291638, 0.14858327574291638, 0.14858327574291638, 0.9101589495507948, 0.8375950241879752, 0.15894955079474776, 0.165860400829302, 0.17208016586040084, 0.16240497581202487, 0.1437456807187284, 0.9184519695922598, 0.9253628196268141, 0.9295093296475466, 0.9378023496890118, 0.9460953697304768, 0.9322736696613684, 0.9281271596406357, 0.9191430545957153, 0.9163787145818936, 0.1271596406357982, 0.12370421561852107, 0.12093987560469938, 0.1188666205943331, 0.11817553559087768, 0.11679336558396683, 0.11679336558396683, 0.11679336558396683, 0.11679336558396683, 0.11679336558396683, 0.9246717346233587, 0.9260539046302695, 0.912232204561161, 0.1734623358673117, 0.1962681409813407, 0.29440221147201107, 0.2736696613683483, 0.3738769868693849, 0.8728403593642018, 0.902557014512785, 0.9384934346924672, 0.9454042847270214, 0.9177608845888044, 0.8838977194194886, 0.8458880442294402, 0.32204561161022804, 0.18037318590186593, 0.13683483068417415, 0.19695922598479612, 0.1271596406357982, 0.10573600552868002, 0.1050449205252246, 0.1050449205252246, 0.1050449205252246, 0.10366275051831375, 0.10435383552176918, 0.10089841050449205, 0.5196959225984796, 0.5418106427090532, 0.530062197650311, 0.5183137525915688, 0.1050449205252246, 0.09467864547339323, 0.09467864547339323, 0.09191430545957152, 0.09053213545266067, 0.09191430545957152, 0.7636489288182446, 0.22114720110573602, 0.22114720110573602, 0.8375950241879752, 0.09536973047684866, 0.08984105044920525, 0.08914996544574982, 0.08776779543883897, 0.08500345542501728, 0.08431237042156185, 0.08431237042156185, 0.08500345542501728, 0.08362128541810643, 0.082930200414651, 0.082930200414651, 0.08362128541810643, 0.08431237042156185, 0.08431237042156185, 0.08638562543192813, 0.0912232204561161, 0.0912232204561161, 0.09191430545957152, 0.09398756046993781, 0.0967519004837595, 0.12024879060124395, 0.1216309606081548, 0.30960608154803043, 0.14789219073946094, 0.138217000691085, 0.13959917069799585, 0.14236351071181755, 0.7601935038009675, 0.7753973738769868, 0.7940566689702834, 0.8147892190739461, 0.8272287491361437, 0.8562543192812716, 0.9225984796129924, 0.8970283344851416, 0.8396682791983414, 0.8203178991015895, 0.8044229440221147, 0.7857636489288182, 0.7719419488597098, 0.7484450587422253, 0.10297166551485833, 0.1796821008984105, 0.18728403593642018, 0.1161022805805114, 0.09467864547339323, 0.09329647546648238, 0.09191430545957152, 0.09191430545957152, 0.09191430545957152, 0.09053213545266067, 0.0995162404975812, 0.09744298548721493, 0.09398756046993781, 0.0995162404975812, 0.09606081548030408, 0.1188666205943331, 0.13476157567380787, 0.13407049067035245, 0.14167242570836214, 0.15549412577747063, 0.2950932964754665, 0.824464409122322, 0.9295093296475466, 0.9391845196959226, 0.9004837595024188, 0.7076710435383552, 0.15134761575673808, 0.07878369039391846, 0.0608154803040774, 0.05044920525224603, 0.04077401520387008, 0.036627505183137524, 0.036627505183137524, 0.036627505183137524, 0.05736005528680028, 0.03455425017277125, 0.035245335176226675, 0.03939184519695923, 0.0359364201796821, 0.038700760193503804, 0.033863165169315826, 0.033863165169315826, 0.033863165169315826, 0.033863165169315826, 0.1022805805114029, 0.26606772633033865, 0.27712508638562544, 0.9467864547339323, 0.414651002073255, 0.14167242570836214, 0.14581893572909468, 0.1796821008984105, 0.12854181064270906, 0.04284727021423635, 0.036627505183137524, 0.0359364201796821, 0.03455425017277125, 0.035245335176226675, 0.035245335176226675, 0.035245335176226675, 0.03455425017277125, 0.0331720801658604, 0.03455425017277125, 0.03455425017277125, 0.035245335176226675, 0.03455425017277125, 0.033863165169315826, 0.03455425017277125, 0.944713199723566, 0.8908085694540429, 0.0331720801658604, 0.03455425017277125, 0.03455425017277125, 0.035245335176226675, 0.035245335176226675, 0.0359364201796821, 0.036627505183137524, 0.03731859018659295, 0.038700760193503804, 0.04077401520387008, 0.0414651002073255, 0.042156185210780926, 0.0442294402211472, 0.044920525224602624, 0.04906703524533518, 0.055286800276434005, 0.06565307532826538, 0.0856945404284727, 0.09260539046302695, 0.09467864547339323, 0.09744298548721493, 0.09882515549412578, 0.1022805805114029, 0.10366275051831375, 0.1161022805805114, 0.12024879060124395, 0.1271596406357982, 0.13959917069799585, 0.15134761575673808, 0.39668279198341394], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DNA_ligase_OB.gap.json b/pfam_gap_rates/DNA_ligase_OB.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..4845198466928058b5137794fea3319c1935c770
--- /dev/null
+++ b/pfam_gap_rates/DNA_ligase_OB.gap.json
@@ -0,0 +1 @@
+{"family": "DNA_ligase_OB", "n_seqs": 2129, "length": 78, "gap_rates": [0.6275246594645374, 0.04321277595115078, 0.015030530765617662, 0.011742602160638797, 0.010803193987787695, 0.010333489901362142, 0.00986378581493659, 0.009394081728511038, 0.009394081728511038, 0.009394081728511038, 0.009394081728511038, 0.010803193987787695, 0.013151714419915453, 0.008454673555659934, 0.007515265382808831, 0.0037576326914044154, 0.0028182245185533112, 0.0028182245185533112, 0.0028182245185533112, 0.0028182245185533112, 0.0028182245185533112, 0.0023485204321277596, 0.0014091122592766556, 0.0014091122592766556, 0.0014091122592766556, 0.0014091122592766556, 0.0014091122592766556, 0.0014091122592766556, 0.0014091122592766556, 0.0018788163457022077, 0.0023485204321277596, 0.0023485204321277596, 0.0023485204321277596, 0.0018788163457022077, 0.0018788163457022077, 0.0018788163457022077, 0.0018788163457022077, 0.0014091122592766556, 0.0014091122592766556, 0.0014091122592766556, 0.0014091122592766556, 0.0014091122592766556, 0.0018788163457022077, 0.0018788163457022077, 0.0018788163457022077, 0.0018788163457022077, 0.0014091122592766556, 0.0018788163457022077, 0.0018788163457022077, 0.0018788163457022077, 0.0018788163457022077, 0.0018788163457022077, 0.0018788163457022077, 0.0018788163457022077, 0.0018788163457022077, 0.0018788163457022077, 0.0018788163457022077, 0.0018788163457022077, 0.0018788163457022077, 0.0023485204321277596, 0.0023485204321277596, 0.0023485204321277596, 0.0023485204321277596, 0.0023485204321277596, 0.0023485204321277596, 0.0023485204321277596, 0.0023485204321277596, 0.0028182245185533112, 0.0032879286049788633, 0.0056364490371066224, 0.012682010333489901, 0.030530765617660875, 0.06998590887740723, 0.10756223579145138, 0.15688116486613435, 0.20854861437294506, 0.27618600281822453, 0.5082198215124472], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DNA_ligase_OB_2.gap.json b/pfam_gap_rates/DNA_ligase_OB_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..3588ce3bb459701689b2ed1fbf7f6f30b6964aba
--- /dev/null
+++ b/pfam_gap_rates/DNA_ligase_OB_2.gap.json
@@ -0,0 +1 @@
+{"family": "DNA_ligase_OB_2", "n_seqs": 214, "length": 76, "gap_rates": [0.32242990654205606, 0.09813084112149532, 0.09813084112149532, 0.08878504672897196, 0.06542056074766354, 0.06074766355140187, 0.0514018691588785, 0.0514018691588785, 0.04205607476635514, 0.028037383177570093, 0.028037383177570093, 0.02336448598130841, 0.014018691588785047, 0.014018691588785047, 0.014018691588785047, 0.014018691588785047, 0.014018691588785047, 0.11682242990654206, 0.9485981308411215, 0.9439252336448598, 0.009345794392523364, 0.009345794392523364, 0.004672897196261682, 0.004672897196261682, 0.004672897196261682, 0.004672897196261682, 0.004672897196261682, 0.004672897196261682, 0.009345794392523364, 0.004672897196261682, 0.004672897196261682, 0.004672897196261682, 0.004672897196261682, 0.004672897196261682, 0.0, 0.0, 0.0, 0.0, 0.794392523364486, 0.8037383177570093, 0.8130841121495327, 0.7990654205607477, 0.794392523364486, 0.004672897196261682, 0.004672897196261682, 0.004672897196261682, 0.004672897196261682, 0.009345794392523364, 0.009345794392523364, 0.009345794392523364, 0.009345794392523364, 0.009345794392523364, 0.009345794392523364, 0.009345794392523364, 0.009345794392523364, 0.009345794392523364, 0.009345794392523364, 0.009345794392523364, 0.009345794392523364, 0.9485981308411215, 0.009345794392523364, 0.009345794392523364, 0.014018691588785047, 0.018691588785046728, 0.9485981308411215, 0.9485981308411215, 0.014018691588785047, 0.014018691588785047, 0.028037383177570093, 0.028037383177570093, 0.028037383177570093, 0.03271028037383177, 0.03271028037383177, 0.07009345794392523, 0.13551401869158877, 0.3317757009345794], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DNA_mis_repair.gap.json b/pfam_gap_rates/DNA_mis_repair.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..941a08cefe666385d7b0ba82ddf7447ae4b560ce
--- /dev/null
+++ b/pfam_gap_rates/DNA_mis_repair.gap.json
@@ -0,0 +1 @@
+{"family": "DNA_mis_repair", "n_seqs": 2430, "length": 130, "gap_rates": [0.7617283950617284, 0.4337448559670782, 0.2868312757201646, 0.2547325102880658, 0.24897119341563786, 0.24526748971193416, 0.23909465020576132, 0.2353909465020576, 0.22839506172839505, 0.22304526748971193, 0.21604938271604937, 0.20864197530864198, 0.20246913580246914, 0.19465020576131686, 0.18765432098765433, 0.17901234567901234, 0.16913580246913582, 0.9432098765432099, 0.14938271604938272, 0.1345679012345679, 0.12098765432098765, 0.1111111111111111, 0.08847736625514403, 0.8300411522633745, 0.9292181069958848, 0.9448559670781893, 0.9152263374485596, 0.8263374485596707, 0.06954732510288066, 0.06419753086419754, 0.05925925925925926, 0.05555555555555555, 0.05267489711934156, 0.048559670781893, 0.047325102880658436, 0.047325102880658436, 0.04609053497942387, 0.04526748971193416, 0.04897119341563786, 0.8728395061728395, 0.8654320987654321, 0.047736625514403296, 0.04238683127572016, 0.04156378600823045, 0.03950617283950617, 0.0448559670781893, 0.14732510288065845, 0.03662551440329218, 0.028395061728395062, 0.025925925925925925, 0.02551440329218107, 0.02551440329218107, 0.02551440329218107, 0.02551440329218107, 0.025102880658436213, 0.024691358024691357, 0.0242798353909465, 0.0242798353909465, 0.023868312757201648, 0.023045267489711935, 0.02263374485596708, 0.022222222222222223, 0.022222222222222223, 0.02139917695473251, 0.020987654320987655, 0.020164609053497942, 0.02139917695473251, 0.0205761316872428, 0.020987654320987655, 0.020987654320987655, 0.022222222222222223, 0.023045267489711935, 0.023045267489711935, 0.9329218106995885, 0.9493827160493827, 0.9395061728395062, 0.9320987654320988, 0.1469135802469136, 0.03950617283950617, 0.03292181069958848, 0.027160493827160494, 0.0242798353909465, 0.02345679012345679, 0.02139917695473251, 0.018930041152263374, 0.01934156378600823, 0.01934156378600823, 0.017695473251028805, 0.017695473251028805, 0.01810699588477366, 0.016049382716049384, 0.016049382716049384, 0.016049382716049384, 0.015637860082304528, 0.01728395061728395, 0.01810699588477366, 0.016049382716049384, 0.015637860082304528, 0.015637860082304528, 0.015226337448559672, 0.015637860082304528, 0.016049382716049384, 0.016872427983539096, 0.016872427983539096, 0.01728395061728395, 0.016872427983539096, 0.016872427983539096, 0.016872427983539096, 0.01728395061728395, 0.01728395061728395, 0.01728395061728395, 0.01728395061728395, 0.01810699588477366, 0.01934156378600823, 0.020987654320987655, 0.021810699588477367, 0.02263374485596708, 0.02345679012345679, 0.025102880658436213, 0.025925925925925925, 0.027983539094650206, 0.02880658436213992, 0.030452674897119343, 0.03497942386831276, 0.044032921810699586, 0.048559670781893, 0.06790123456790123, 0.09218106995884774, 0.14156378600823044, 0.2609053497942387], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DNA_pol3_a_NII.gap.json b/pfam_gap_rates/DNA_pol3_a_NII.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..addb0c43178deffba15c69ca4eec8cdb22e00743
--- /dev/null
+++ b/pfam_gap_rates/DNA_pol3_a_NII.gap.json
@@ -0,0 +1 @@
+{"family": "DNA_pol3_a_NII", "n_seqs": 317, "length": 121, "gap_rates": [0.35962145110410093, 0.11356466876971609, 0.06309148264984227, 0.0473186119873817, 0.03785488958990536, 0.03785488958990536, 0.028391167192429023, 0.01892744479495268, 0.01892744479495268, 0.01892744479495268, 0.01892744479495268, 0.04100946372239748, 0.01892744479495268, 0.015772870662460567, 0.012618296529968454, 0.012618296529968454, 0.012618296529968454, 0.012618296529968454, 0.012618296529968454, 0.012618296529968454, 0.006309148264984227, 0.006309148264984227, 0.006309148264984227, 0.006309148264984227, 0.006309148264984227, 0.0031545741324921135, 0.0031545741324921135, 0.0031545741324921135, 0.943217665615142, 0.0031545741324921135, 0.0031545741324921135, 0.0031545741324921135, 0.0031545741324921135, 0.0031545741324921135, 0.006309148264984227, 0.0694006309148265, 0.006309148264984227, 0.006309148264984227, 0.006309148264984227, 0.0031545741324921135, 0.006309148264984227, 0.0031545741324921135, 0.0031545741324921135, 0.08517350157728706, 0.0031545741324921135, 0.006309148264984227, 0.006309148264984227, 0.0031545741324921135, 0.0031545741324921135, 0.006309148264984227, 0.03470031545741325, 0.006309148264984227, 0.0031545741324921135, 0.0031545741324921135, 0.0, 0.0, 0.0, 0.0, 0.0031545741324921135, 0.0, 0.0, 0.0031545741324921135, 0.0031545741324921135, 0.0, 0.0, 0.9463722397476341, 0.4416403785488959, 0.0031545741324921135, 0.0031545741324921135, 0.0031545741324921135, 0.0031545741324921135, 0.0031545741324921135, 0.0031545741324921135, 0.0031545741324921135, 0.00946372239747634, 0.00946372239747634, 0.5520504731861199, 0.19242902208201892, 0.21451104100946372, 0.08832807570977919, 0.08517350157728706, 0.0694006309148265, 0.12618296529968454, 0.12618296529968454, 0.9463722397476341, 0.9211356466876972, 0.04416403785488959, 0.03785488958990536, 0.04100946372239748, 0.03785488958990536, 0.03785488958990536, 0.03785488958990536, 0.04100946372239748, 0.04100946372239748, 0.04100946372239748, 0.0473186119873817, 0.0473186119873817, 0.0473186119873817, 0.05362776025236593, 0.05362776025236593, 0.056782334384858045, 0.05993690851735016, 0.06309148264984227, 0.943217665615142, 0.10410094637223975, 0.08201892744479496, 0.08832807570977919, 0.0914826498422713, 0.11041009463722397, 0.11987381703470032, 0.138801261829653, 0.15457413249211358, 0.17981072555205047, 0.2082018927444795, 0.2555205047318612, 0.29652996845425866, 0.35331230283911674, 0.42586750788643535, 0.526813880126183, 0.6782334384858044, 0.8107255520504731], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DNA_pol3_chi.gap.json b/pfam_gap_rates/DNA_pol3_chi.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..66c4916e891144fe732d0f3e26d6279a6ec056f1
--- /dev/null
+++ b/pfam_gap_rates/DNA_pol3_chi.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DNA_pol_B_exo1.gap.json b/pfam_gap_rates/DNA_pol_B_exo1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d1e0fd57ca1b251008d7627544e1f7259dcad16c
--- /dev/null
+++ b/pfam_gap_rates/DNA_pol_B_exo1.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF1007.gap.json b/pfam_gap_rates/DUF1007.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..179ae53bb28236dc615caa04403991cae4ff7882
--- /dev/null
+++ b/pfam_gap_rates/DUF1007.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF1016.gap.json b/pfam_gap_rates/DUF1016.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..2d2be0a1d8e3c96147c7a2da1a824b8c6b0ac188
--- /dev/null
+++ b/pfam_gap_rates/DUF1016.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF1027.gap.json b/pfam_gap_rates/DUF1027.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..4dfa3eeb79fbee8a72c682e5567d8df1d67602b7
--- /dev/null
+++ b/pfam_gap_rates/DUF1027.gap.json
@@ -0,0 +1 @@
+{"family": "DUF1027", "n_seqs": 215, "length": 85, "gap_rates": [0.9209302325581395, 0.14418604651162792, 0.06046511627906977, 0.023255813953488372, 0.018604651162790697, 0.004651162790697674, 0.004651162790697674, 0.004651162790697674, 0.004651162790697674, 0.004651162790697674, 0.004651162790697674, 0.004651162790697674, 0.004651162790697674, 0.009302325581395349, 0.009302325581395349, 0.004651162790697674, 0.004651162790697674, 0.004651162790697674, 0.004651162790697674, 0.004651162790697674, 0.004651162790697674, 0.004651162790697674, 0.004651162790697674, 0.004651162790697674, 0.004651162790697674, 0.004651162790697674, 0.004651162790697674, 0.004651162790697674, 0.004651162790697674, 0.004651162790697674, 0.004651162790697674, 0.004651162790697674, 0.004651162790697674, 0.004651162790697674, 0.004651162790697674, 0.004651162790697674, 0.004651162790697674, 0.004651162790697674, 0.004651162790697674, 0.004651162790697674, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.12558139534883722, 0.027906976744186046, 0.027906976744186046, 0.027906976744186046, 0.004651162790697674, 0.004651162790697674, 0.004651162790697674, 0.004651162790697674, 0.004651162790697674, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.06511627906976744], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF1041.gap.json b/pfam_gap_rates/DUF1041.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..85fce4cfb98e00fc1b3641cfc5eecad0bf0f48a8
--- /dev/null
+++ b/pfam_gap_rates/DUF1041.gap.json
@@ -0,0 +1 @@
+{"family": "DUF1041", "n_seqs": 218, "length": 118, "gap_rates": [0.5871559633027523, 0.10091743119266056, 0.0871559633027523, 0.0871559633027523, 0.08256880733944955, 0.08256880733944955, 0.08256880733944955, 0.08256880733944955, 0.08256880733944955, 0.08256880733944955, 0.08256880733944955, 0.08256880733944955, 0.08256880733944955, 0.08256880733944955, 0.08256880733944955, 0.07339449541284404, 0.07339449541284404, 0.07339449541284404, 0.07339449541284404, 0.0779816513761468, 0.07339449541284404, 0.07339449541284404, 0.07339449541284404, 0.06880733944954129, 0.06880733944954129, 0.07339449541284404, 0.07339449541284404, 0.10550458715596331, 0.10550458715596331, 0.12844036697247707, 0.23853211009174313, 0.2889908256880734, 0.30275229357798167, 0.27522935779816515, 0.5137614678899083, 0.5091743119266054, 0.48623853211009177, 0.6009174311926605, 0.6605504587155964, 0.8211009174311926, 0.9311926605504587, 0.9495412844036697, 0.9495412844036697, 0.9174311926605505, 0.7477064220183486, 0.6330275229357798, 0.591743119266055, 0.41743119266055045, 0.5, 0.44954128440366975, 0.9128440366972477, 0.9357798165137615, 0.9220183486238532, 0.8899082568807339, 0.44495412844036697, 0.09174311926605505, 0.06422018348623854, 0.05504587155963303, 0.05045871559633028, 0.05045871559633028, 0.05045871559633028, 0.05045871559633028, 0.05045871559633028, 0.05045871559633028, 0.05045871559633028, 0.05045871559633028, 0.05045871559633028, 0.05045871559633028, 0.05045871559633028, 0.05045871559633028, 0.04128440366972477, 0.04128440366972477, 0.04128440366972477, 0.04128440366972477, 0.04128440366972477, 0.04128440366972477, 0.03669724770642202, 0.03669724770642202, 0.03669724770642202, 0.03669724770642202, 0.03669724770642202, 0.03669724770642202, 0.03669724770642202, 0.3669724770642202, 0.3669724770642202, 0.3623853211009174, 0.03669724770642202, 0.027522935779816515, 0.04128440366972477, 0.05045871559633028, 0.05045871559633028, 0.05045871559633028, 0.05045871559633028, 0.05045871559633028, 0.05045871559633028, 0.05045871559633028, 0.05045871559633028, 0.05045871559633028, 0.05045871559633028, 0.05045871559633028, 0.05045871559633028, 0.05045871559633028, 0.05045871559633028, 0.05504587155963303, 0.05504587155963303, 0.05504587155963303, 0.05504587155963303, 0.05963302752293578, 0.05963302752293578, 0.05504587155963303, 0.05504587155963303, 0.05504587155963303, 0.05504587155963303, 0.05504587155963303, 0.05504587155963303, 0.05963302752293578, 0.12385321100917432, 0.14220183486238533], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF1045.gap.json b/pfam_gap_rates/DUF1045.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..981cd2693efdf1d1893011b603ab1d635565a36b
--- /dev/null
+++ b/pfam_gap_rates/DUF1045.gap.json
@@ -0,0 +1 @@
+{"family": "DUF1045", "n_seqs": 130, "length": 161, "gap_rates": [0.12307692307692308, 0.08461538461538462, 0.07692307692307693, 0.07692307692307693, 0.07692307692307693, 0.07692307692307693, 0.06923076923076923, 0.06923076923076923, 0.06923076923076923, 0.06153846153846154, 0.046153846153846156, 0.046153846153846156, 0.11538461538461539, 0.09230769230769231, 0.015384615384615385, 0.015384615384615385, 0.015384615384615385, 0.015384615384615385, 0.015384615384615385, 0.007692307692307693, 0.007692307692307693, 0.007692307692307693, 0.007692307692307693, 0.007692307692307693, 0.007692307692307693, 0.007692307692307693, 0.007692307692307693, 0.007692307692307693, 0.007692307692307693, 0.007692307692307693, 0.007692307692307693, 0.007692307692307693, 0.007692307692307693, 0.007692307692307693, 0.07692307692307693, 0.015384615384615385, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.9384615384615385, 0.046153846153846156, 0.007692307692307693, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.015384615384615385, 0.015384615384615385, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.038461538461538464, 0.03076923076923077, 0.03076923076923077, 0.015384615384615385, 0.007692307692307693, 0.007692307692307693, 0.015384615384615385, 0.038461538461538464, 0.015384615384615385, 0.015384615384615385, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.007692307692307693, 0.015384615384615385, 0.823076923076923, 0.038461538461538464, 0.038461538461538464, 0.038461538461538464, 0.015384615384615385, 0.015384615384615385, 0.023076923076923078, 0.015384615384615385, 0.015384615384615385, 0.015384615384615385, 0.015384615384615385, 0.015384615384615385, 0.015384615384615385, 0.015384615384615385, 0.03076923076923077, 0.03076923076923077, 0.038461538461538464, 0.038461538461538464, 0.046153846153846156, 0.046153846153846156, 0.046153846153846156, 0.11538461538461539, 0.1076923076923077, 0.07692307692307693, 0.06923076923076923, 0.05384615384615385, 0.046153846153846156, 0.046153846153846156, 0.046153846153846156, 0.046153846153846156, 0.046153846153846156, 0.046153846153846156, 0.05384615384615385, 0.05384615384615385, 0.05384615384615385, 0.06153846153846154, 0.05384615384615385, 0.08461538461538462, 0.07692307692307693, 0.1076923076923077, 0.34615384615384615, 0.23846153846153847, 0.5846153846153846], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF1053.gap.json b/pfam_gap_rates/DUF1053.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..98465f305c6039ea5961959b5dc8b1d2416a7259
--- /dev/null
+++ b/pfam_gap_rates/DUF1053.gap.json
@@ -0,0 +1 @@
+{"family": "DUF1053", "n_seqs": 202, "length": 114, "gap_rates": [0.6831683168316832, 0.5544554455445545, 0.5099009900990099, 0.48514851485148514, 0.4801980198019802, 0.38613861386138615, 0.3811881188118812, 0.3564356435643564, 0.35148514851485146, 0.3415841584158416, 0.33663366336633666, 0.32673267326732675, 0.32673267326732675, 0.31683168316831684, 0.31683168316831684, 0.31683168316831684, 0.31683168316831684, 0.3118811881188119, 0.3118811881188119, 0.36633663366336633, 0.36633663366336633, 0.4306930693069307, 0.4207920792079208, 0.3415841584158416, 0.31683168316831684, 0.30198019801980197, 0.297029702970297, 0.37623762376237624, 0.3415841584158416, 0.7673267326732673, 0.8762376237623762, 0.8861386138613861, 0.9356435643564357, 0.8861386138613861, 0.7970297029702971, 0.7227722772277227, 0.2524752475247525, 0.2623762376237624, 0.2623762376237624, 0.2623762376237624, 0.24257425742574257, 0.24752475247524752, 0.2524752475247525, 0.24752475247524752, 0.4158415841584158, 0.6237623762376238, 0.6039603960396039, 0.5396039603960396, 0.4752475247524752, 0.3712871287128713, 0.24257425742574257, 0.15841584158415842, 0.12376237623762376, 0.10891089108910891, 0.09405940594059406, 0.09405940594059406, 0.07920792079207921, 0.15346534653465346, 0.0594059405940594, 0.0594059405940594, 0.06435643564356436, 0.0594059405940594, 0.0594059405940594, 0.9405940594059405, 0.9405940594059405, 0.9207920792079208, 0.0594059405940594, 0.0594059405940594, 0.054455445544554455, 0.054455445544554455, 0.04455445544554455, 0.039603960396039604, 0.039603960396039604, 0.039603960396039604, 0.039603960396039604, 0.039603960396039604, 0.039603960396039604, 0.039603960396039604, 0.039603960396039604, 0.039603960396039604, 0.034653465346534656, 0.034653465346534656, 0.7425742574257426, 0.9257425742574258, 0.7376237623762376, 0.0594059405940594, 0.04455445544554455, 0.039603960396039604, 0.04455445544554455, 0.04455445544554455, 0.04455445544554455, 0.04455445544554455, 0.04455445544554455, 0.04950495049504951, 0.04950495049504951, 0.04950495049504951, 0.04950495049504951, 0.04950495049504951, 0.04950495049504951, 0.04950495049504951, 0.04950495049504951, 0.04950495049504951, 0.04950495049504951, 0.0594059405940594, 0.0594059405940594, 0.12376237623762376, 0.13366336633663367, 0.15346534653465346, 0.18811881188118812, 0.19306930693069307, 0.21782178217821782, 0.2623762376237624, 0.2871287128712871, 0.4207920792079208], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF1127.gap.json b/pfam_gap_rates/DUF1127.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..eb129b55f7226c89eb29443530c9a1c45ed08c95
--- /dev/null
+++ b/pfam_gap_rates/DUF1127.gap.json
@@ -0,0 +1 @@
+{"family": "DUF1127", "n_seqs": 452, "length": 37, "gap_rates": [0.7256637168141593, 0.5132743362831859, 0.37831858407079644, 0.3030973451327434, 0.2411504424778761, 0.18584070796460178, 0.1592920353982301, 0.14380530973451328, 0.11061946902654868, 0.08628318584070796, 0.06637168141592921, 0.05309734513274336, 0.03982300884955752, 0.02654867256637168, 0.024336283185840708, 0.022123893805309734, 0.017699115044247787, 0.00663716814159292, 0.00663716814159292, 0.004424778761061947, 0.0, 0.0, 0.0022123893805309734, 0.0022123893805309734, 0.0022123893805309734, 0.0022123893805309734, 0.0022123893805309734, 0.0, 0.0, 0.0022123893805309734, 0.008849557522123894, 0.02654867256637168, 0.04424778761061947, 0.08628318584070796, 0.1261061946902655, 0.1592920353982301, 0.6969026548672567], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF1129.gap.json b/pfam_gap_rates/DUF1129.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..4bbf06de58e3609bc7dda1b51c77472249beb047
--- /dev/null
+++ b/pfam_gap_rates/DUF1129.gap.json
@@ -0,0 +1 @@
+{"family": "DUF1129", "n_seqs": 133, "length": 222, "gap_rates": [0.49624060150375937, 0.15037593984962405, 0.12781954887218044, 0.10526315789473684, 0.09774436090225563, 0.09774436090225563, 0.09774436090225563, 0.08270676691729323, 0.07518796992481203, 0.07518796992481203, 0.07518796992481203, 0.06766917293233082, 0.06766917293233082, 0.06766917293233082, 0.07518796992481203, 0.06015037593984962, 0.05263157894736842, 0.8421052631578947, 0.09774436090225563, 0.06766917293233082, 0.045112781954887216, 0.03759398496240601, 0.007518796992481203, 0.007518796992481203, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.6616541353383458, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.007518796992481203, 0.007518796992481203, 0.0, 0.0, 0.0, 0.007518796992481203, 0.007518796992481203, 0.8721804511278195, 0.9323308270676691, 0.7819548872180451, 0.6691729323308271, 0.48120300751879697, 0.3609022556390977, 0.24060150375939848, 0.015037593984962405, 0.0, 0.0, 0.0, 0.0, 0.03759398496240601, 0.03759398496240601, 0.022556390977443608, 0.015037593984962405, 0.022556390977443608, 0.0, 0.0, 0.0, 0.007518796992481203, 0.0, 0.0, 0.0, 0.007518796992481203, 0.015037593984962405, 0.022556390977443608, 0.015037593984962405, 0.015037593984962405, 0.0, 0.007518796992481203, 0.015037593984962405, 0.0, 0.0, 0.13533834586466165, 0.05263157894736842, 0.03007518796992481, 0.03759398496240601, 0.022556390977443608, 0.05263157894736842, 0.5939849624060151, 0.8721804511278195, 0.924812030075188, 0.7894736842105263, 0.43609022556390975, 0.15789473684210525, 0.007518796992481203, 0.022556390977443608, 0.007518796992481203, 0.007518796992481203, 0.007518796992481203, 0.0, 0.007518796992481203, 0.007518796992481203, 0.0, 0.0, 0.007518796992481203, 0.0, 0.007518796992481203, 0.007518796992481203, 0.0, 0.0, 0.007518796992481203, 0.007518796992481203, 0.0, 0.0, 0.007518796992481203, 0.007518796992481203, 0.007518796992481203, 0.015037593984962405, 0.09022556390977443, 0.47368421052631576, 0.7518796992481203, 0.8721804511278195, 0.8120300751879699, 0.6766917293233082, 0.2932330827067669, 0.07518796992481203, 0.05263157894736842, 0.022556390977443608, 0.007518796992481203, 0.007518796992481203, 0.022556390977443608, 0.022556390977443608, 0.03759398496240601, 0.022556390977443608, 0.007518796992481203, 0.022556390977443608, 0.007518796992481203, 0.015037593984962405, 0.015037593984962405, 0.015037593984962405, 0.015037593984962405, 0.015037593984962405, 0.015037593984962405, 0.015037593984962405, 0.015037593984962405, 0.015037593984962405, 0.015037593984962405, 0.015037593984962405, 0.022556390977443608, 0.022556390977443608, 0.022556390977443608, 0.015037593984962405, 0.015037593984962405, 0.022556390977443608, 0.022556390977443608, 0.022556390977443608, 0.7969924812030075, 0.03007518796992481, 0.03007518796992481, 0.022556390977443608, 0.03007518796992481, 0.045112781954887216, 0.07518796992481203, 0.07518796992481203, 0.045112781954887216, 0.03759398496240601, 0.03007518796992481, 0.03759398496240601, 0.03007518796992481, 0.03007518796992481, 0.03007518796992481, 0.03007518796992481, 0.03759398496240601, 0.03759398496240601, 0.045112781954887216, 0.045112781954887216, 0.045112781954887216, 0.06766917293233082, 0.07518796992481203, 0.07518796992481203, 0.08270676691729323, 0.09774436090225563, 0.11278195488721804, 0.11278195488721804, 0.12781954887218044, 0.14285714285714285, 0.14285714285714285, 0.17293233082706766, 0.23308270676691728, 0.2556390977443609, 0.2631578947368421, 0.3007518796992481, 0.39849624060150374, 0.924812030075188], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF1154.gap.json b/pfam_gap_rates/DUF1154.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..9627de9cddd72f950bc5dc24bad9d02510e61315
--- /dev/null
+++ b/pfam_gap_rates/DUF1154.gap.json
@@ -0,0 +1 @@
+{"family": "DUF1154", "n_seqs": 105, "length": 45, "gap_rates": [0.8380952380952381, 0.6095238095238096, 0.5333333333333333, 0.20952380952380953, 0.1523809523809524, 0.09523809523809523, 0.06666666666666667, 0.02857142857142857, 0.009523809523809525, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.02857142857142857, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.009523809523809525, 0.009523809523809525, 0.009523809523809525, 0.01904761904761905, 0.02857142857142857, 0.0761904761904762, 0.08571428571428572, 0.2761904761904762, 0.3142857142857143, 0.38095238095238093, 0.44761904761904764], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF1217.gap.json b/pfam_gap_rates/DUF1217.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f5c442980c71b37a7f4d471c4123ad9c4efe26c5
--- /dev/null
+++ b/pfam_gap_rates/DUF1217.gap.json
@@ -0,0 +1 @@
+{"family": "DUF1217", "n_seqs": 175, "length": 175, "gap_rates": [0.10285714285714286, 0.05714285714285714, 0.05142857142857143, 0.045714285714285714, 0.045714285714285714, 0.045714285714285714, 0.04, 0.04, 0.045714285714285714, 0.03428571428571429, 0.03428571428571429, 0.03428571428571429, 0.02857142857142857, 0.02857142857142857, 0.02857142857142857, 0.02857142857142857, 0.02857142857142857, 0.02857142857142857, 0.02857142857142857, 0.02857142857142857, 0.02857142857142857, 0.03428571428571429, 0.04, 0.03428571428571429, 0.03428571428571429, 0.03428571428571429, 0.02857142857142857, 0.02857142857142857, 0.02857142857142857, 0.02857142857142857, 0.02857142857142857, 0.02857142857142857, 0.04, 0.04, 0.03428571428571429, 0.03428571428571429, 0.03428571428571429, 0.02857142857142857, 0.02857142857142857, 0.022857142857142857, 0.022857142857142857, 0.022857142857142857, 0.022857142857142857, 0.022857142857142857, 0.022857142857142857, 0.017142857142857144, 0.017142857142857144, 0.03428571428571429, 0.02857142857142857, 0.02857142857142857, 0.03428571428571429, 0.04, 0.04, 0.05714285714285714, 0.03428571428571429, 0.03428571428571429, 0.022857142857142857, 0.8914285714285715, 0.9257142857142857, 0.88, 0.07428571428571429, 0.05714285714285714, 0.06857142857142857, 0.045714285714285714, 0.045714285714285714, 0.84, 0.8628571428571429, 0.8914285714285715, 0.8742857142857143, 0.84, 0.8342857142857143, 0.045714285714285714, 0.05142857142857143, 0.05142857142857143, 0.05142857142857143, 0.045714285714285714, 0.045714285714285714, 0.06857142857142857, 0.07428571428571429, 0.09142857142857143, 0.07428571428571429, 0.09142857142857143, 0.10857142857142857, 0.10857142857142857, 0.09714285714285714, 0.09714285714285714, 0.08571428571428572, 0.07428571428571429, 0.07428571428571429, 0.07428571428571429, 0.09142857142857143, 0.08571428571428572, 0.9257142857142857, 0.10285714285714286, 0.09714285714285714, 0.09142857142857143, 0.08571428571428572, 0.06857142857142857, 0.06857142857142857, 0.06857142857142857, 0.06857142857142857, 0.06857142857142857, 0.06857142857142857, 0.06857142857142857, 0.06857142857142857, 0.06857142857142857, 0.06857142857142857, 0.06857142857142857, 0.06857142857142857, 0.8057142857142857, 0.8114285714285714, 0.8114285714285714, 0.8114285714285714, 0.8114285714285714, 0.8114285714285714, 0.8057142857142857, 0.8, 0.06857142857142857, 0.06857142857142857, 0.06857142857142857, 0.07428571428571429, 0.07428571428571429, 0.07428571428571429, 0.07428571428571429, 0.07428571428571429, 0.07428571428571429, 0.08, 0.08, 0.09714285714285714, 0.12, 0.14285714285714285, 0.14285714285714285, 0.14285714285714285, 0.14857142857142858, 0.14857142857142858, 0.17142857142857143, 0.9485714285714286, 0.2342857142857143, 0.2571428571428571, 0.2742857142857143, 0.2914285714285714, 0.30857142857142855, 0.32, 0.33714285714285713, 0.33714285714285713, 0.34285714285714286, 0.3485714285714286, 0.35428571428571426, 0.35428571428571426, 0.35428571428571426, 0.35428571428571426, 0.35428571428571426, 0.35428571428571426, 0.35428571428571426, 0.35428571428571426, 0.35428571428571426, 0.35428571428571426, 0.84, 0.84, 0.8457142857142858, 0.8457142857142858, 0.8457142857142858, 0.84, 0.8171428571428572, 0.36, 0.37142857142857144, 0.37714285714285717, 0.38285714285714284, 0.38285714285714284, 0.38285714285714284, 0.38857142857142857, 0.4, 0.44, 0.49714285714285716, 0.6171428571428571], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF1241.gap.json b/pfam_gap_rates/DUF1241.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..0c287653daeb1a46dacc78af3ee9c7a0024eac92
--- /dev/null
+++ b/pfam_gap_rates/DUF1241.gap.json
@@ -0,0 +1 @@
+{"family": "DUF1241", "n_seqs": 116, "length": 166, "gap_rates": [0.8017241379310345, 0.5689655172413793, 0.3793103448275862, 0.3448275862068966, 0.31896551724137934, 0.2413793103448276, 0.1206896551724138, 0.11206896551724138, 0.11206896551724138, 0.11206896551724138, 0.10344827586206896, 0.10344827586206896, 0.10344827586206896, 0.10344827586206896, 0.10344827586206896, 0.10344827586206896, 0.10344827586206896, 0.10344827586206896, 0.10344827586206896, 0.10344827586206896, 0.9396551724137931, 0.9310344827586207, 0.10344827586206896, 0.10344827586206896, 0.9396551724137931, 0.8706896551724138, 0.09482758620689655, 0.6810344827586207, 0.7327586206896551, 0.8706896551724138, 0.8362068965517241, 0.6810344827586207, 0.6810344827586207, 0.08620689655172414, 0.07758620689655173, 0.07758620689655173, 0.0603448275862069, 0.05172413793103448, 0.05172413793103448, 0.05172413793103448, 0.05172413793103448, 0.05172413793103448, 0.05172413793103448, 0.05172413793103448, 0.04310344827586207, 0.04310344827586207, 0.04310344827586207, 0.04310344827586207, 0.04310344827586207, 0.04310344827586207, 0.04310344827586207, 0.04310344827586207, 0.04310344827586207, 0.05172413793103448, 0.05172413793103448, 0.05172413793103448, 0.05172413793103448, 0.05172413793103448, 0.05172413793103448, 0.05172413793103448, 0.04310344827586207, 0.04310344827586207, 0.04310344827586207, 0.04310344827586207, 0.034482758620689655, 0.10344827586206896, 0.14655172413793102, 0.1896551724137931, 0.19827586206896552, 0.8706896551724138, 0.8362068965517241, 0.19827586206896552, 0.19827586206896552, 0.22413793103448276, 0.23275862068965517, 0.23275862068965517, 0.23275862068965517, 0.23275862068965517, 0.22413793103448276, 0.22413793103448276, 0.22413793103448276, 0.22413793103448276, 0.22413793103448276, 0.22413793103448276, 0.8362068965517241, 0.8362068965517241, 0.8017241379310345, 0.5517241379310345, 0.27586206896551724, 0.27586206896551724, 0.2413793103448276, 0.25, 0.25, 0.2413793103448276, 0.2413793103448276, 0.23275862068965517, 0.23275862068965517, 0.23275862068965517, 0.25, 0.23275862068965517, 0.9051724137931034, 0.7931034482758621, 0.23275862068965517, 0.23275862068965517, 0.23275862068965517, 0.22413793103448276, 0.22413793103448276, 0.22413793103448276, 0.22413793103448276, 0.22413793103448276, 0.23275862068965517, 0.23275862068965517, 0.23275862068965517, 0.23275862068965517, 0.23275862068965517, 0.23275862068965517, 0.23275862068965517, 0.23275862068965517, 0.23275862068965517, 0.23275862068965517, 0.23275862068965517, 0.2413793103448276, 0.2413793103448276, 0.2413793103448276, 0.2413793103448276, 0.2413793103448276, 0.2413793103448276, 0.2413793103448276, 0.2413793103448276, 0.2413793103448276, 0.2413793103448276, 0.2413793103448276, 0.23275862068965517, 0.23275862068965517, 0.23275862068965517, 0.23275862068965517, 0.22413793103448276, 0.23275862068965517, 0.23275862068965517, 0.23275862068965517, 0.23275862068965517, 0.23275862068965517, 0.23275862068965517, 0.23275862068965517, 0.23275862068965517, 0.23275862068965517, 0.23275862068965517, 0.23275862068965517, 0.2413793103448276, 0.2413793103448276, 0.2413793103448276, 0.2413793103448276, 0.2413793103448276, 0.2413793103448276, 0.25, 0.27586206896551724, 0.28448275862068967, 0.3017241379310345, 0.6379310344827587, 0.4224137931034483, 0.43103448275862066, 0.4482758620689655, 0.4482758620689655, 0.45689655172413796, 0.46551724137931033, 0.5344827586206896], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF1289.gap.json b/pfam_gap_rates/DUF1289.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..49820ad6363954592086ed362be74bf9d9d02a93
--- /dev/null
+++ b/pfam_gap_rates/DUF1289.gap.json
@@ -0,0 +1 @@
+{"family": "DUF1289", "n_seqs": 465, "length": 48, "gap_rates": [0.09247311827956989, 0.05806451612903226, 0.043010752688172046, 0.043010752688172046, 0.034408602150537634, 0.030107526881720432, 0.030107526881720432, 0.030107526881720432, 0.021505376344086023, 0.021505376344086023, 0.43870967741935485, 0.06666666666666667, 0.017204301075268817, 0.017204301075268817, 0.015053763440860216, 0.015053763440860216, 0.002150537634408602, 0.002150537634408602, 0.002150537634408602, 0.0, 0.0, 0.0064516129032258064, 0.0064516129032258064, 0.0064516129032258064, 0.0064516129032258064, 0.0064516129032258064, 0.008602150537634409, 0.015053763440860216, 0.023655913978494623, 0.023655913978494623, 0.023655913978494623, 0.023655913978494623, 0.025806451612903226, 0.025806451612903226, 0.025806451612903226, 0.023655913978494623, 0.023655913978494623, 0.023655913978494623, 0.023655913978494623, 0.03225806451612903, 0.03655913978494624, 0.03870967741935484, 0.043010752688172046, 0.05161290322580645, 0.09247311827956989, 0.20430107526881722, 0.3032258064516129, 0.7354838709677419], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF1292.gap.json b/pfam_gap_rates/DUF1292.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f2d8da3c04fc393e43c495d6f929e30586403f02
--- /dev/null
+++ b/pfam_gap_rates/DUF1292.gap.json
@@ -0,0 +1 @@
+{"family": "DUF1292", "n_seqs": 1024, "length": 87, "gap_rates": [0.1669921875, 0.0810546875, 0.0546875, 0.0419921875, 0.0302734375, 0.01953125, 0.0107421875, 0.005859375, 0.0068359375, 0.00390625, 0.0029296875, 0.0029296875, 0.0029296875, 0.0029296875, 0.0029296875, 0.009765625, 0.0029296875, 0.87109375, 0.8544921875, 0.001953125, 0.8427734375, 0.8310546875, 0.001953125, 0.001953125, 0.001953125, 0.001953125, 0.001953125, 0.001953125, 0.666015625, 0.7900390625, 0.5703125, 0.28125, 0.3125, 0.8662109375, 0.5009765625, 0.3251953125, 0.3720703125, 0.2919921875, 0.1826171875, 0.134765625, 0.0380859375, 0.0166015625, 0.0224609375, 0.130859375, 0.8798828125, 0.56640625, 0.005859375, 0.0029296875, 0.0009765625, 0.0009765625, 0.0, 0.369140625, 0.0185546875, 0.9150390625, 0.3125, 0.1640625, 0.1171875, 0.9453125, 0.021484375, 0.01171875, 0.111328125, 0.94140625, 0.107421875, 0.1064453125, 0.076171875, 0.005859375, 0.001953125, 0.0185546875, 0.00390625, 0.04296875, 0.0146484375, 0.0048828125, 0.0048828125, 0.0068359375, 0.005859375, 0.0048828125, 0.0068359375, 0.0087890625, 0.0126953125, 0.015625, 0.01953125, 0.029296875, 0.0439453125, 0.078125, 0.15625, 0.2978515625, 0.572265625], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF1311.gap.json b/pfam_gap_rates/DUF1311.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..fc4e5ca4080e43b75fbae287b702e592ada6016c
--- /dev/null
+++ b/pfam_gap_rates/DUF1311.gap.json
@@ -0,0 +1 @@
+{"family": "DUF1311", "n_seqs": 506, "length": 116, "gap_rates": [0.642292490118577, 0.5968379446640316, 0.5612648221343873, 0.5533596837944664, 0.5632411067193676, 0.5592885375494071, 0.6146245059288538, 0.5869565217391305, 0.5553359683794467, 0.4189723320158103, 0.5592885375494071, 0.48616600790513836, 0.6541501976284585, 0.5335968379446641, 0.1600790513833992, 0.14031620553359683, 0.13043478260869565, 0.12055335968379446, 0.09486166007905138, 0.07114624505928854, 0.0691699604743083, 0.04940711462450593, 0.041501976284584984, 0.041501976284584984, 0.03162055335968379, 0.023715415019762844, 0.021739130434782608, 0.019762845849802372, 0.019762845849802372, 0.019762845849802372, 0.025691699604743084, 0.019762845849802372, 0.017786561264822136, 0.924901185770751, 0.029644268774703556, 0.02766798418972332, 0.025691699604743084, 0.023715415019762844, 0.808300395256917, 0.8873517786561265, 0.9387351778656127, 0.9209486166007905, 0.8359683794466403, 0.7766798418972332, 0.7351778656126482, 0.849802371541502, 0.8320158102766798, 0.8280632411067194, 0.7075098814229249, 0.8735177865612648, 0.9189723320158103, 0.7885375494071146, 0.12845849802371542, 0.09486166007905138, 0.0691699604743083, 0.04940711462450593, 0.03359683794466403, 0.025691699604743084, 0.023715415019762844, 0.019762845849802372, 0.009881422924901186, 0.007905138339920948, 0.005928853754940711, 0.001976284584980237, 0.001976284584980237, 0.001976284584980237, 0.001976284584980237, 0.001976284584980237, 0.001976284584980237, 0.0, 0.0, 0.0, 0.001976284584980237, 0.003952569169960474, 0.005928853754940711, 0.005928853754940711, 0.05138339920948617, 0.015810276679841896, 0.3201581027667984, 0.31225296442687744, 0.2924901185770751, 0.2727272727272727, 0.2727272727272727, 0.2549407114624506, 0.2391304347826087, 0.23715415019762845, 0.24110671936758893, 0.5296442687747036, 0.5197628458498024, 0.5434782608695652, 0.4426877470355731, 0.45454545454545453, 0.9288537549407114, 0.5652173913043478, 0.5434782608695652, 0.525691699604743, 0.4901185770750988, 0.4051383399209486, 0.13636363636363635, 0.12055335968379446, 0.09683794466403162, 0.09090909090909091, 0.09288537549407115, 0.09288537549407115, 0.09486166007905138, 0.09288537549407115, 0.09486166007905138, 0.09683794466403162, 0.1007905138339921, 0.10474308300395258, 0.10869565217391304, 0.116600790513834, 0.1422924901185771, 0.1857707509881423, 0.25296442687747034, 0.3142292490118577], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF1320.gap.json b/pfam_gap_rates/DUF1320.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..256d3e9278083b4898813d00b2858a26188c0179
--- /dev/null
+++ b/pfam_gap_rates/DUF1320.gap.json
@@ -0,0 +1 @@
+{"family": "DUF1320", "n_seqs": 143, "length": 141, "gap_rates": [0.25874125874125875, 0.20279720279720279, 0.16783216783216784, 0.16083916083916083, 0.13986013986013987, 0.13286713286713286, 0.13286713286713286, 0.13286713286713286, 0.13286713286713286, 0.13286713286713286, 0.1258741258741259, 0.13286713286713286, 0.1258741258741259, 0.1258741258741259, 0.11888111888111888, 0.11188811188811189, 0.11188811188811189, 0.11188811188811189, 0.1048951048951049, 0.1048951048951049, 0.11188811188811189, 0.1048951048951049, 0.1048951048951049, 0.1048951048951049, 0.8321678321678322, 0.8601398601398601, 0.9090909090909091, 0.8391608391608392, 0.7272727272727273, 0.6293706293706294, 0.27972027972027974, 0.17482517482517482, 0.14685314685314685, 0.13286713286713286, 0.1258741258741259, 0.1048951048951049, 0.03496503496503497, 0.03496503496503497, 0.027972027972027972, 0.027972027972027972, 0.02097902097902098, 0.013986013986013986, 0.013986013986013986, 0.013986013986013986, 0.013986013986013986, 0.013986013986013986, 0.013986013986013986, 0.02097902097902098, 0.02097902097902098, 0.02097902097902098, 0.02097902097902098, 0.02097902097902098, 0.02097902097902098, 0.02097902097902098, 0.02097902097902098, 0.08391608391608392, 0.03496503496503497, 0.03496503496503497, 0.04195804195804196, 0.027972027972027972, 0.04195804195804196, 0.04195804195804196, 0.027972027972027972, 0.8461538461538461, 0.8811188811188811, 0.9020979020979021, 0.8881118881118881, 0.8671328671328671, 0.7762237762237763, 0.02097902097902098, 0.02097902097902098, 0.055944055944055944, 0.055944055944055944, 0.04195804195804196, 0.04195804195804196, 0.03496503496503497, 0.03496503496503497, 0.03496503496503497, 0.03496503496503497, 0.03496503496503497, 0.03496503496503497, 0.03496503496503497, 0.03496503496503497, 0.027972027972027972, 0.03496503496503497, 0.03496503496503497, 0.03496503496503497, 0.03496503496503497, 0.03496503496503497, 0.03496503496503497, 0.6923076923076923, 0.8461538461538461, 0.4965034965034965, 0.3006993006993007, 0.8251748251748252, 0.42657342657342656, 0.06293706293706294, 0.055944055944055944, 0.055944055944055944, 0.06993006993006994, 0.055944055944055944, 0.055944055944055944, 0.055944055944055944, 0.055944055944055944, 0.055944055944055944, 0.055944055944055944, 0.055944055944055944, 0.055944055944055944, 0.055944055944055944, 0.06293706293706294, 0.06993006993006994, 0.06993006993006994, 0.06993006993006994, 0.06993006993006994, 0.06993006993006994, 0.06993006993006994, 0.07692307692307693, 0.08391608391608392, 0.08391608391608392, 0.09090909090909091, 0.09090909090909091, 0.1048951048951049, 0.1258741258741259, 0.13286713286713286, 0.14685314685314685, 0.16083916083916083, 0.18181818181818182, 0.2097902097902098, 0.3916083916083916, 0.3706293706293706, 0.35664335664335667, 0.38461538461538464, 0.3986013986013986, 0.44755244755244755, 0.48951048951048953, 0.5734265734265734, 0.6573426573426573, 0.7482517482517482, 0.7762237762237763, 0.8601398601398601, 0.9300699300699301], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF1328.gap.json b/pfam_gap_rates/DUF1328.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ee8e334e8bca0746c5d3a9e74bf83dc7965cb4a9
--- /dev/null
+++ b/pfam_gap_rates/DUF1328.gap.json
@@ -0,0 +1 @@
+{"family": "DUF1328", "n_seqs": 418, "length": 39, "gap_rates": [0.08133971291866028, 0.019138755980861243, 0.011961722488038277, 0.009569377990430622, 0.007177033492822967, 0.004784688995215311, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0023923444976076554, 0.0023923444976076554, 0.0023923444976076554, 0.0023923444976076554, 0.0023923444976076554, 0.0023923444976076554, 0.004784688995215311, 0.009569377990430622, 0.0215311004784689, 0.20574162679425836], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF1329.gap.json b/pfam_gap_rates/DUF1329.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ff5fc6956688cb173c7736bd814d3caf9b61c7b6
--- /dev/null
+++ b/pfam_gap_rates/DUF1329.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF1343.gap.json b/pfam_gap_rates/DUF1343.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..bc48b15fb00eb6c3c57ec363e8fafd202cfdbdd2
--- /dev/null
+++ b/pfam_gap_rates/DUF1343.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF1345.gap.json b/pfam_gap_rates/DUF1345.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..079842c72f1e6e81c66ce814865b368ed624b3e2
--- /dev/null
+++ b/pfam_gap_rates/DUF1345.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF1350.gap.json b/pfam_gap_rates/DUF1350.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..6d5839895de0c4a9f4a24e8e3b69b600f412f1ba
--- /dev/null
+++ b/pfam_gap_rates/DUF1350.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF1451.gap.json b/pfam_gap_rates/DUF1451.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..3c7a5a55a992c600a590b9de844d48cde18bf705
--- /dev/null
+++ b/pfam_gap_rates/DUF1451.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF1456.gap.json b/pfam_gap_rates/DUF1456.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d0dbb16877fa042c5ff886920be9fdd626ab45c0
--- /dev/null
+++ b/pfam_gap_rates/DUF1456.gap.json
@@ -0,0 +1 @@
+{"family": "DUF1456", "n_seqs": 347, "length": 81, "gap_rates": [0.07492795389048991, 0.025936599423631124, 0.025936599423631124, 0.023054755043227664, 0.020172910662824207, 0.020172910662824207, 0.020172910662824207, 0.01729106628242075, 0.01729106628242075, 0.01729106628242075, 0.01440922190201729, 0.01440922190201729, 0.01440922190201729, 0.01440922190201729, 0.01440922190201729, 0.01440922190201729, 0.01440922190201729, 0.01440922190201729, 0.011527377521613832, 0.011527377521613832, 0.008645533141210375, 0.008645533141210375, 0.008645533141210375, 0.008645533141210375, 0.005763688760806916, 0.005763688760806916, 0.005763688760806916, 0.005763688760806916, 0.005763688760806916, 0.005763688760806916, 0.002881844380403458, 0.002881844380403458, 0.002881844380403458, 0.002881844380403458, 0.002881844380403458, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.8904899135446686, 0.9106628242074928, 0.9250720461095101, 0.9452449567723343, 0.9164265129682997, 0.9020172910662824, 0.8818443804034583, 0.0, 0.025936599423631124, 0.025936599423631124, 0.025936599423631124, 0.02881844380403458, 0.025936599423631124, 0.02881844380403458, 0.002881844380403458, 0.9077809798270894, 0.9250720461095101, 0.9452449567723343, 0.930835734870317, 0.9193083573487032, 0.8962536023054755, 0.002881844380403458, 0.002881844380403458, 0.002881844380403458, 0.002881844380403458, 0.002881844380403458, 0.002881844380403458, 0.005763688760806916, 0.005763688760806916, 0.005763688760806916, 0.005763688760806916, 0.005763688760806916, 0.005763688760806916, 0.008645533141210375, 0.01440922190201729, 0.020172910662824207, 0.0345821325648415, 0.05475504322766571, 0.06340057636887608, 0.3025936599423631], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF1476.gap.json b/pfam_gap_rates/DUF1476.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..eb7069d42cbf477a2b68473b9ee00506b1554222
--- /dev/null
+++ b/pfam_gap_rates/DUF1476.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF1501.gap.json b/pfam_gap_rates/DUF1501.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..caafcdc3122d9abef1c95e85eecc47a6cbe9d964
--- /dev/null
+++ b/pfam_gap_rates/DUF1501.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF1516.gap.json b/pfam_gap_rates/DUF1516.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..86c9894d5b9ffa57c60013ff90c937877eba6d68
--- /dev/null
+++ b/pfam_gap_rates/DUF1516.gap.json
@@ -0,0 +1 @@
+{"family": "DUF1516", "n_seqs": 112, "length": 115, "gap_rates": [0.5267857142857143, 0.24107142857142858, 0.08035714285714286, 0.07142857142857142, 0.07142857142857142, 0.05357142857142857, 0.03571428571428571, 0.017857142857142856, 0.017857142857142856, 0.017857142857142856, 0.017857142857142856, 0.017857142857142856, 0.008928571428571428, 0.008928571428571428, 0.008928571428571428, 0.008928571428571428, 0.008928571428571428, 0.017857142857142856, 0.017857142857142856, 0.008928571428571428, 0.03571428571428571, 0.08035714285714286, 0.08928571428571429, 0.10714285714285714, 0.45535714285714285, 0.375, 0.26785714285714285, 0.11607142857142858, 0.10714285714285714, 0.07142857142857142, 0.017857142857142856, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.21428571428571427, 0.4017857142857143, 0.8482142857142857, 0.9107142857142857, 0.8571428571428571, 0.8125, 0.03571428571428571, 0.017857142857142856, 0.017857142857142856, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.008928571428571428, 0.008928571428571428, 0.008928571428571428, 0.017857142857142856, 0.9285714285714286, 0.9375, 0.8928571428571429, 0.008928571428571428, 0.008928571428571428, 0.0, 0.0, 0.0, 0.0, 0.008928571428571428, 0.008928571428571428, 0.008928571428571428, 0.008928571428571428, 0.008928571428571428, 0.008928571428571428, 0.008928571428571428, 0.017857142857142856, 0.026785714285714284, 0.026785714285714284, 0.03571428571428571, 0.03571428571428571, 0.05357142857142857, 0.0625, 0.09821428571428571, 0.13392857142857142], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF1517.gap.json b/pfam_gap_rates/DUF1517.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..6fe8869852e88e741efa24ad5ac5f1eab88ba4a9
--- /dev/null
+++ b/pfam_gap_rates/DUF1517.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF1542.gap.json b/pfam_gap_rates/DUF1542.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..2adfcd15da578e899fda22367c3df379f218e690
--- /dev/null
+++ b/pfam_gap_rates/DUF1542.gap.json
@@ -0,0 +1 @@
+{"family": "DUF1542", "n_seqs": 239, "length": 72, "gap_rates": [0.4895397489539749, 0.20502092050209206, 0.12552301255230125, 0.0794979079497908, 0.06694560669456066, 0.06694560669456066, 0.06694560669456066, 0.05439330543933055, 0.04602510460251046, 0.03347280334728033, 0.029288702928870293, 0.02092050209205021, 0.02092050209205021, 0.02092050209205021, 0.02092050209205021, 0.012552301255230125, 0.008368200836820083, 0.0041841004184100415, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0041841004184100415, 0.0, 0.0041841004184100415, 0.0, 0.0, 0.0, 0.0, 0.0041841004184100415, 0.0041841004184100415, 0.008368200836820083, 0.016736401673640166, 0.029288702928870293, 0.03347280334728033, 0.03347280334728033, 0.03347280334728033, 0.03347280334728033, 0.03347280334728033, 0.04184100418410042, 0.04602510460251046, 0.06276150627615062, 0.07531380753138076, 0.08786610878661087, 0.10460251046025104, 0.7322175732217573, 0.8284518828451883, 0.7489539748953975, 0.7112970711297071, 0.16317991631799164, 0.20920502092050208, 0.22594142259414227, 0.27615062761506276, 0.301255230125523, 0.32217573221757323, 0.5062761506276151], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF1604.gap.json b/pfam_gap_rates/DUF1604.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..1d19c8b7d1b1fbea7543671589e69045ce5c0a63
--- /dev/null
+++ b/pfam_gap_rates/DUF1604.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF1622.gap.json b/pfam_gap_rates/DUF1622.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b2d9b04dcc03685e28906d15f7eb503be7d7d945
--- /dev/null
+++ b/pfam_gap_rates/DUF1622.gap.json
@@ -0,0 +1 @@
+{"family": "DUF1622", "n_seqs": 273, "length": 83, "gap_rates": [0.4908424908424908, 0.38095238095238093, 0.315018315018315, 0.30036630036630035, 0.27106227106227104, 0.2454212454212454, 0.21978021978021978, 0.21245421245421245, 0.1978021978021978, 0.18681318681318682, 0.1794871794871795, 0.18681318681318682, 0.1794871794871795, 0.16483516483516483, 0.16483516483516483, 0.1684981684981685, 0.17216117216117216, 0.7655677655677655, 0.8644688644688645, 0.8168498168498168, 0.5714285714285714, 0.41025641025641024, 0.24175824175824176, 0.18681318681318682, 0.1684981684981685, 0.047619047619047616, 0.040293040293040296, 0.040293040293040296, 0.040293040293040296, 0.03663003663003663, 0.03296703296703297, 0.029304029304029304, 0.02564102564102564, 0.02564102564102564, 0.02564102564102564, 0.02197802197802198, 0.018315018315018316, 0.018315018315018316, 0.014652014652014652, 0.014652014652014652, 0.014652014652014652, 0.014652014652014652, 0.014652014652014652, 0.014652014652014652, 0.003663003663003663, 0.007326007326007326, 0.007326007326007326, 0.007326007326007326, 0.007326007326007326, 0.007326007326007326, 0.007326007326007326, 0.007326007326007326, 0.007326007326007326, 0.007326007326007326, 0.007326007326007326, 0.7362637362637363, 0.003663003663003663, 0.007326007326007326, 0.007326007326007326, 0.003663003663003663, 0.003663003663003663, 0.003663003663003663, 0.003663003663003663, 0.003663003663003663, 0.003663003663003663, 0.003663003663003663, 0.003663003663003663, 0.003663003663003663, 0.003663003663003663, 0.003663003663003663, 0.003663003663003663, 0.003663003663003663, 0.007326007326007326, 0.01098901098901099, 0.01098901098901099, 0.01098901098901099, 0.01098901098901099, 0.018315018315018316, 0.018315018315018316, 0.02197802197802198, 0.02564102564102564, 0.047619047619047616, 0.08424908424908426], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF1643.gap.json b/pfam_gap_rates/DUF1643.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..7a5c0a25d8e7f056adf6613cb35bdcbbd52daca2
--- /dev/null
+++ b/pfam_gap_rates/DUF1643.gap.json
@@ -0,0 +1 @@
+{"family": "DUF1643", "n_seqs": 185, "length": 165, "gap_rates": [0.2, 0.1783783783783784, 0.17297297297297298, 0.15135135135135136, 0.14054054054054055, 0.14054054054054055, 0.14054054054054055, 0.14054054054054055, 0.9081081081081082, 0.9243243243243243, 0.8702702702702703, 0.17297297297297298, 0.16216216216216217, 0.1837837837837838, 0.1891891891891892, 0.1783783783783784, 0.14054054054054055, 0.9459459459459459, 0.07027027027027027, 0.06486486486486487, 0.05945945945945946, 0.05405405405405406, 0.04864864864864865, 0.04864864864864865, 0.04864864864864865, 0.04864864864864865, 0.04864864864864865, 0.05405405405405406, 0.05405405405405406, 0.05945945945945946, 0.05945945945945946, 0.05945945945945946, 0.05405405405405406, 0.043243243243243246, 0.03783783783783784, 0.03783783783783784, 0.03783783783783784, 0.032432432432432434, 0.032432432432432434, 0.032432432432432434, 0.032432432432432434, 0.032432432432432434, 0.032432432432432434, 0.032432432432432434, 0.03783783783783784, 0.032432432432432434, 0.02702702702702703, 0.02702702702702703, 0.032432432432432434, 0.9459459459459459, 0.032432432432432434, 0.03783783783783784, 0.02702702702702703, 0.02702702702702703, 0.02702702702702703, 0.016216216216216217, 0.016216216216216217, 0.016216216216216217, 0.016216216216216217, 0.016216216216216217, 0.016216216216216217, 0.016216216216216217, 0.016216216216216217, 0.016216216216216217, 0.02702702702702703, 0.021621621621621623, 0.043243243243243246, 0.032432432432432434, 0.032432432432432434, 0.021621621621621623, 0.016216216216216217, 0.016216216216216217, 0.9459459459459459, 0.9459459459459459, 0.08648648648648649, 0.10270270270270271, 0.9081081081081082, 0.08108108108108109, 0.07567567567567568, 0.9027027027027027, 0.06486486486486487, 0.05405405405405406, 0.032432432432432434, 0.016216216216216217, 0.9297297297297298, 0.9351351351351351, 0.9459459459459459, 0.9405405405405406, 0.9297297297297298, 0.9297297297297298, 0.016216216216216217, 0.016216216216216217, 0.016216216216216217, 0.016216216216216217, 0.016216216216216217, 0.021621621621621623, 0.021621621621621623, 0.02702702702702703, 0.02702702702702703, 0.02702702702702703, 0.9405405405405406, 0.9297297297297298, 0.02702702702702703, 0.9243243243243243, 0.9027027027027027, 0.043243243243243246, 0.04864864864864865, 0.03783783783783784, 0.8756756756756757, 0.9351351351351351, 0.918918918918919, 0.8648648648648649, 0.032432432432432434, 0.032432432432432434, 0.032432432432432434, 0.032432432432432434, 0.032432432432432434, 0.032432432432432434, 0.5567567567567567, 0.7189189189189189, 0.7945945945945946, 0.6324324324324324, 0.08648648648648649, 0.8756756756756757, 0.04864864864864865, 0.05405405405405406, 0.07027027027027027, 0.07027027027027027, 0.05405405405405406, 0.04864864864864865, 0.043243243243243246, 0.043243243243243246, 0.043243243243243246, 0.043243243243243246, 0.043243243243243246, 0.043243243243243246, 0.043243243243243246, 0.04864864864864865, 0.05405405405405406, 0.05405405405405406, 0.05405405405405406, 0.0918918918918919, 0.11891891891891893, 0.2, 0.17297297297297298, 0.16216216216216217, 0.11351351351351352, 0.8972972972972973, 0.9297297297297298, 0.8378378378378378, 0.08108108108108109, 0.0918918918918919, 0.08648648648648649, 0.9135135135135135, 0.0972972972972973, 0.0918918918918919, 0.0918918918918919, 0.0918918918918919, 0.0918918918918919, 0.0918918918918919, 0.0918918918918919, 0.10810810810810811, 0.11351351351351352, 0.14054054054054055, 0.21621621621621623], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF1666.gap.json b/pfam_gap_rates/DUF1666.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..bc57d1bd4a1e673389cda6c45bc4e785532c1ac9
--- /dev/null
+++ b/pfam_gap_rates/DUF1666.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF1679.gap.json b/pfam_gap_rates/DUF1679.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d737c18f2f6208ae94668946750ebb0bd08641fa
--- /dev/null
+++ b/pfam_gap_rates/DUF1679.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF1681.gap.json b/pfam_gap_rates/DUF1681.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e822e816aabc73224edbc94dcc383c641079fe14
--- /dev/null
+++ b/pfam_gap_rates/DUF1681.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF1682.gap.json b/pfam_gap_rates/DUF1682.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b328c033f8945dff10dce000ec7c3c528cf7ca55
--- /dev/null
+++ b/pfam_gap_rates/DUF1682.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF1722.gap.json b/pfam_gap_rates/DUF1722.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..43030265f0226ae31ded5a4e7dfd0a3e0dc8491a
--- /dev/null
+++ b/pfam_gap_rates/DUF1722.gap.json
@@ -0,0 +1 @@
+{"family": "DUF1722", "n_seqs": 291, "length": 118, "gap_rates": [0.048109965635738834, 0.01718213058419244, 0.013745704467353952, 0.013745704467353952, 0.013745704467353952, 0.013745704467353952, 0.013745704467353952, 0.013745704467353952, 0.020618556701030927, 0.024054982817869417, 0.01718213058419244, 0.013745704467353952, 0.013745704467353952, 0.013745704467353952, 0.013745704467353952, 0.010309278350515464, 0.010309278350515464, 0.010309278350515464, 0.010309278350515464, 0.010309278350515464, 0.006872852233676976, 0.006872852233676976, 0.006872852233676976, 0.01718213058419244, 0.9278350515463918, 0.054982817869415807, 0.09965635738831616, 0.25773195876288657, 0.25773195876288657, 0.18556701030927836, 0.15463917525773196, 0.07216494845360824, 0.010309278350515464, 0.010309278350515464, 0.010309278350515464, 0.010309278350515464, 0.013745704467353952, 0.013745704467353952, 0.013745704467353952, 0.010309278350515464, 0.010309278350515464, 0.010309278350515464, 0.010309278350515464, 0.010309278350515464, 0.010309278350515464, 0.010309278350515464, 0.010309278350515464, 0.010309278350515464, 0.010309278350515464, 0.010309278350515464, 0.010309278350515464, 0.010309278350515464, 0.010309278350515464, 0.013745704467353952, 0.013745704467353952, 0.013745704467353952, 0.010309278350515464, 0.010309278350515464, 0.010309278350515464, 0.010309278350515464, 0.010309278350515464, 0.010309278350515464, 0.010309278350515464, 0.010309278350515464, 0.01718213058419244, 0.027491408934707903, 0.027491408934707903, 0.027491408934707903, 0.030927835051546393, 0.027491408934707903, 0.027491408934707903, 0.030927835051546393, 0.03436426116838488, 0.037800687285223365, 0.037800687285223365, 0.037800687285223365, 0.041237113402061855, 0.05154639175257732, 0.05154639175257732, 0.05154639175257732, 0.06529209621993128, 0.06872852233676977, 0.07560137457044673, 0.07903780068728522, 0.07903780068728522, 0.08247422680412371, 0.12027491408934708, 0.11683848797250859, 0.10996563573883161, 0.06872852233676977, 0.06529209621993128, 0.06529209621993128, 0.061855670103092786, 0.061855670103092786, 0.061855670103092786, 0.061855670103092786, 0.061855670103092786, 0.061855670103092786, 0.061855670103092786, 0.061855670103092786, 0.061855670103092786, 0.061855670103092786, 0.061855670103092786, 0.061855670103092786, 0.06529209621993128, 0.06529209621993128, 0.06529209621993128, 0.06529209621993128, 0.06529209621993128, 0.06529209621993128, 0.06872852233676977, 0.06872852233676977, 0.06872852233676977, 0.07560137457044673, 0.17525773195876287, 0.24054982817869416, 0.2542955326460481, 0.281786941580756], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF1731.gap.json b/pfam_gap_rates/DUF1731.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d35a0dd7b624dbf4c4d771cfbcfaa50d9d1cba34
--- /dev/null
+++ b/pfam_gap_rates/DUF1731.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF1741.gap.json b/pfam_gap_rates/DUF1741.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..129ecad8e45d28eb201224124e49310af3b1c417
--- /dev/null
+++ b/pfam_gap_rates/DUF1741.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF1769.gap.json b/pfam_gap_rates/DUF1769.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b5128bdae176ef1e144a148769726a006146dc40
--- /dev/null
+++ b/pfam_gap_rates/DUF1769.gap.json
@@ -0,0 +1 @@
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diff --git a/pfam_gap_rates/DUF1777.gap.json b/pfam_gap_rates/DUF1777.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..2544a201fbaa04e12bfc916b9172a7832ff18661
--- /dev/null
+++ b/pfam_gap_rates/DUF1777.gap.json
@@ -0,0 +1 @@
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diff --git a/pfam_gap_rates/DUF1822.gap.json b/pfam_gap_rates/DUF1822.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..1d651fb47fdbb604120441d43665b3c29ade6263
--- /dev/null
+++ b/pfam_gap_rates/DUF1822.gap.json
@@ -0,0 +1 @@
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diff --git a/pfam_gap_rates/DUF1863.gap.json b/pfam_gap_rates/DUF1863.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..dac5d9869ce5c1239830ef2c8a66d4394895e50a
--- /dev/null
+++ b/pfam_gap_rates/DUF1863.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF190.gap.json b/pfam_gap_rates/DUF190.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..8fcd22cc5fb2b4093d028672e99077a440ce8026
--- /dev/null
+++ b/pfam_gap_rates/DUF190.gap.json
@@ -0,0 +1 @@
+{"family": "DUF190", "n_seqs": 360, "length": 101, "gap_rates": [0.8333333333333334, 0.24444444444444444, 0.13055555555555556, 0.09722222222222222, 0.09166666666666666, 0.09166666666666666, 0.08888888888888889, 0.08333333333333333, 0.07777777777777778, 0.08333333333333333, 0.08333333333333333, 0.08333333333333333, 0.13055555555555556, 0.12222222222222222, 0.10555555555555556, 0.09444444444444444, 0.08055555555555556, 0.041666666666666664, 0.027777777777777776, 0.025, 0.016666666666666666, 0.008333333333333333, 0.011111111111111112, 0.008333333333333333, 0.008333333333333333, 0.008333333333333333, 0.005555555555555556, 0.005555555555555556, 0.002777777777777778, 0.9083333333333333, 0.002777777777777778, 0.002777777777777778, 0.005555555555555556, 0.002777777777777778, 0.002777777777777778, 0.002777777777777778, 0.002777777777777778, 0.002777777777777778, 0.002777777777777778, 0.005555555555555556, 0.005555555555555556, 0.005555555555555556, 0.005555555555555556, 0.005555555555555556, 0.005555555555555556, 0.030555555555555555, 0.008333333333333333, 0.005555555555555556, 0.03888888888888889, 0.008333333333333333, 0.011111111111111112, 0.011111111111111112, 0.008333333333333333, 0.008333333333333333, 0.005555555555555556, 0.005555555555555556, 0.005555555555555556, 0.013888888888888888, 0.019444444444444445, 0.08055555555555556, 0.03333333333333333, 0.016666666666666666, 0.013888888888888888, 0.013888888888888888, 0.011111111111111112, 0.005555555555555556, 0.005555555555555556, 0.005555555555555556, 0.005555555555555556, 0.005555555555555556, 0.005555555555555556, 0.005555555555555556, 0.005555555555555556, 0.005555555555555556, 0.008333333333333333, 0.005555555555555556, 0.005555555555555556, 0.005555555555555556, 0.005555555555555556, 0.008333333333333333, 0.008333333333333333, 0.008333333333333333, 0.016666666666666666, 0.06111111111111111, 0.11944444444444445, 0.1361111111111111, 0.14444444444444443, 0.14722222222222223, 0.9111111111111111, 0.9444444444444444, 0.8611111111111112, 0.15, 0.1527777777777778, 0.1527777777777778, 0.15833333333333333, 0.18055555555555555, 0.2111111111111111, 0.2222222222222222, 0.26944444444444443, 0.375, 0.5111111111111111], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF1974.gap.json b/pfam_gap_rates/DUF1974.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a72003cba21202f2760592f6b27c8ab2a945c307
--- /dev/null
+++ b/pfam_gap_rates/DUF1974.gap.json
@@ -0,0 +1 @@
+{"family": "DUF1974", "n_seqs": 274, "length": 295, "gap_rates": [0.051094890510948905, 0.043795620437956206, 0.0364963503649635, 0.029197080291970802, 0.029197080291970802, 0.029197080291970802, 0.029197080291970802, 0.029197080291970802, 0.029197080291970802, 0.029197080291970802, 0.025547445255474453, 0.025547445255474453, 0.025547445255474453, 0.025547445255474453, 0.021897810218978103, 0.021897810218978103, 0.021897810218978103, 0.021897810218978103, 0.3795620437956204, 0.33941605839416056, 0.33211678832116787, 0.3248175182481752, 0.01824817518248175, 0.01824817518248175, 0.01824817518248175, 0.01824817518248175, 0.01824817518248175, 0.01824817518248175, 0.01824817518248175, 0.01824817518248175, 0.01824817518248175, 0.01824817518248175, 0.01824817518248175, 0.01824817518248175, 0.01824817518248175, 0.01824817518248175, 0.01824817518248175, 0.01824817518248175, 0.01824817518248175, 0.01824817518248175, 0.01824817518248175, 0.01824817518248175, 0.01824817518248175, 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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF1990.gap.json b/pfam_gap_rates/DUF1990.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..26465b51771b78dc70953986f9b7ca6a5a8c0ff1
--- /dev/null
+++ b/pfam_gap_rates/DUF1990.gap.json
@@ -0,0 +1 @@
+{"family": "DUF1990", "n_seqs": 228, "length": 185, "gap_rates": [0.7324561403508771, 0.6228070175438597, 0.618421052631579, 0.6008771929824561, 0.5921052631578947, 0.5701754385964912, 0.5526315789473685, 0.5394736842105263, 0.5263157894736842, 0.6096491228070176, 0.8728070175438597, 0.9210526315789473, 0.9210526315789473, 0.9122807017543859, 0.7017543859649122, 0.5701754385964912, 0.4342105263157895, 0.37280701754385964, 0.2631578947368421, 0.24561403508771928, 0.23684210526315788, 0.2236842105263158, 0.21929824561403508, 0.21929824561403508, 0.21929824561403508, 0.21929824561403508, 0.21929824561403508, 0.21929824561403508, 0.2149122807017544, 0.21052631578947367, 0.9473684210526315, 0.9473684210526315, 0.9473684210526315, 0.21052631578947367, 0.2543859649122807, 0.25, 0.9473684210526315, 0.9385964912280702, 0.22807017543859648, 0.21052631578947367, 0.20614035087719298, 0.20175438596491227, 0.20175438596491227, 0.20175438596491227, 0.19736842105263158, 0.19298245614035087, 0.18859649122807018, 0.18859649122807018, 0.18421052631578946, 0.17982456140350878, 0.17982456140350878, 0.17982456140350878, 0.17982456140350878, 0.17543859649122806, 0.17543859649122806, 0.17543859649122806, 0.17543859649122806, 0.17543859649122806, 0.16666666666666666, 0.17105263157894737, 0.17105263157894737, 0.9473684210526315, 0.17105263157894737, 0.16666666666666666, 0.16666666666666666, 0.17105263157894737, 0.17105263157894737, 0.49122807017543857, 0.2324561403508772, 0.16666666666666666, 0.15789473684210525, 0.15789473684210525, 0.14912280701754385, 0.14912280701754385, 0.15350877192982457, 0.3991228070175439, 0.3815789473684211, 0.15350877192982457, 0.14912280701754385, 0.14912280701754385, 0.15350877192982457, 0.4692982456140351, 0.20614035087719298, 0.18859649122807018, 0.9429824561403509, 0.9210526315789473, 0.2850877192982456, 0.24561403508771928, 0.16228070175438597, 0.14912280701754385, 0.8552631578947368, 0.8596491228070176, 0.6754385964912281, 0.12719298245614036, 0.12719298245614036, 0.12280701754385964, 0.12280701754385964, 0.12280701754385964, 0.12280701754385964, 0.13157894736842105, 0.13596491228070176, 0.14912280701754385, 0.14473684210526316, 0.7192982456140351, 0.7280701754385965, 0.7719298245614035, 0.8464912280701754, 0.9078947368421053, 0.9385964912280702, 0.9385964912280702, 0.881578947368421, 0.8289473684210527, 0.7456140350877193, 0.7192982456140351, 0.7105263157894737, 0.14912280701754385, 0.14473684210526316, 0.13157894736842105, 0.13157894736842105, 0.11842105263157894, 0.12280701754385964, 0.12280701754385964, 0.12280701754385964, 0.12280701754385964, 0.11842105263157894, 0.11842105263157894, 0.11403508771929824, 0.11403508771929824, 0.10964912280701754, 0.11403508771929824, 0.11403508771929824, 0.11842105263157894, 0.12280701754385964, 0.12280701754385964, 0.12280701754385964, 0.12280701754385964, 0.12280701754385964, 0.12280701754385964, 0.12280701754385964, 0.12280701754385964, 0.12280701754385964, 0.11842105263157894, 0.12280701754385964, 0.11842105263157894, 0.7719298245614035, 0.14473684210526316, 0.12280701754385964, 0.14035087719298245, 0.12719298245614036, 0.12280701754385964, 0.12719298245614036, 0.12719298245614036, 0.12719298245614036, 0.12719298245614036, 0.12719298245614036, 0.12719298245614036, 0.12719298245614036, 0.12719298245614036, 0.12719298245614036, 0.12719298245614036, 0.17105263157894737, 0.17543859649122806, 0.17543859649122806, 0.17982456140350878, 0.14473684210526316, 0.14912280701754385, 0.14912280701754385, 0.15789473684210525, 0.16666666666666666, 0.16666666666666666, 0.16666666666666666, 0.17105263157894737, 0.17105263157894737, 0.17543859649122806, 0.18859649122807018, 0.19298245614035087, 0.19736842105263158, 0.19736842105263158, 0.19736842105263158, 0.2149122807017544, 0.2324561403508772, 0.2412280701754386, 0.2631578947368421, 0.3684210526315789, 0.7631578947368421], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF2046.gap.json b/pfam_gap_rates/DUF2046.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..abd5aea48cf8df563dfafce01652624e13c155a3
--- /dev/null
+++ b/pfam_gap_rates/DUF2046.gap.json
@@ -0,0 +1 @@
+{"family": "DUF2046", "n_seqs": 184, "length": 315, "gap_rates": [0.8097826086956522, 0.7663043478260869, 0.7336956521739131, 0.7228260869565217, 0.7554347826086957, 0.717391304347826, 0.717391304347826, 0.7065217391304348, 0.6902173913043478, 0.6793478260869565, 0.6739130434782609, 0.7065217391304348, 0.7010869565217391, 0.717391304347826, 0.7391304347826086, 0.7282608695652174, 0.6739130434782609, 0.657608695652174, 0.6467391304347826, 0.625, 0.6195652173913043, 0.6141304347826086, 0.5978260869565217, 0.5978260869565217, 0.592391304347826, 0.5815217391304348, 0.5706521739130435, 0.5760869565217391, 0.5652173913043478, 0.5380434782608695, 0.5380434782608695, 0.532608695652174, 0.5271739130434783, 0.5271739130434783, 0.5271739130434783, 0.5163043478260869, 0.5108695652173914, 0.5217391304347826, 0.5, 0.4945652173913043, 0.4673913043478261, 0.46195652173913043, 0.46195652173913043, 0.46195652173913043, 0.46195652173913043, 0.44565217391304346, 0.42934782608695654, 0.41847826086956524, 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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF2071.gap.json b/pfam_gap_rates/DUF2071.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..1b22a5df4e2e88581995623d8c691da655b5fc25
--- /dev/null
+++ b/pfam_gap_rates/DUF2071.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF2076.gap.json b/pfam_gap_rates/DUF2076.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..91face3e1030e354e48d8a78ff3b3ce4cc9c90ec
--- /dev/null
+++ b/pfam_gap_rates/DUF2076.gap.json
@@ -0,0 +1 @@
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diff --git a/pfam_gap_rates/DUF2089.gap.json b/pfam_gap_rates/DUF2089.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..3e9870b2d79dd87ec5a5e5c83321a6c8f7c37080
--- /dev/null
+++ b/pfam_gap_rates/DUF2089.gap.json
@@ -0,0 +1 @@
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diff --git a/pfam_gap_rates/DUF2090.gap.json b/pfam_gap_rates/DUF2090.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..51b697555fa755ece30c74651de45a29357db2c2
--- /dev/null
+++ b/pfam_gap_rates/DUF2090.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF2093.gap.json b/pfam_gap_rates/DUF2093.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..25b2f0bc27e301eef755a40cafed6862b074af04
--- /dev/null
+++ b/pfam_gap_rates/DUF2093.gap.json
@@ -0,0 +1 @@
+{"family": "DUF2093", "n_seqs": 103, "length": 42, "gap_rates": [0.14563106796116504, 0.0970873786407767, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.02912621359223301, 0.1262135922330097, 0.4077669902912621], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF2126.gap.json b/pfam_gap_rates/DUF2126.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..88b9a1023003520822b26aa567fab6afe9f2fba9
--- /dev/null
+++ b/pfam_gap_rates/DUF2126.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF2164.gap.json b/pfam_gap_rates/DUF2164.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..94d314b89eab92950a3a120b94831964b02212b5
--- /dev/null
+++ b/pfam_gap_rates/DUF2164.gap.json
@@ -0,0 +1 @@
+{"family": "DUF2164", "n_seqs": 188, "length": 74, "gap_rates": [0.42021276595744683, 0.19148936170212766, 0.06382978723404255, 0.0425531914893617, 0.0425531914893617, 0.0425531914893617, 0.0425531914893617, 0.03723404255319149, 0.03723404255319149, 0.03723404255319149, 0.02127659574468085, 0.02127659574468085, 0.02127659574468085, 0.02127659574468085, 0.02127659574468085, 0.015957446808510637, 0.015957446808510637, 0.010638297872340425, 0.015957446808510637, 0.010638297872340425, 0.010638297872340425, 0.010638297872340425, 0.010638297872340425, 0.015957446808510637, 0.015957446808510637, 0.010638297872340425, 0.005319148936170213, 0.005319148936170213, 0.005319148936170213, 0.005319148936170213, 0.005319148936170213, 0.010638297872340425, 0.005319148936170213, 0.005319148936170213, 0.005319148936170213, 0.005319148936170213, 0.005319148936170213, 0.005319148936170213, 0.0, 0.0, 0.0, 0.005319148936170213, 0.005319148936170213, 0.010638297872340425, 0.015957446808510637, 0.015957446808510637, 0.015957446808510637, 0.026595744680851064, 0.02127659574468085, 0.02127659574468085, 0.02127659574468085, 0.02127659574468085, 0.02127659574468085, 0.02127659574468085, 0.026595744680851064, 0.026595744680851064, 0.026595744680851064, 0.031914893617021274, 0.031914893617021274, 0.031914893617021274, 0.031914893617021274, 0.031914893617021274, 0.031914893617021274, 0.031914893617021274, 0.031914893617021274, 0.03723404255319149, 0.13829787234042554, 0.20212765957446807, 0.2127659574468085, 0.22340425531914893, 0.28191489361702127, 0.2925531914893617, 0.35638297872340424, 0.4787234042553192], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF2200.gap.json b/pfam_gap_rates/DUF2200.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..112a3740f5c1e946c754a5e5359aa4bc68ba7c78
--- /dev/null
+++ b/pfam_gap_rates/DUF2200.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF2243.gap.json b/pfam_gap_rates/DUF2243.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..3e4493f16fba82ae965e46f63f359747f3998915
--- /dev/null
+++ b/pfam_gap_rates/DUF2243.gap.json
@@ -0,0 +1 @@
+{"family": "DUF2243", "n_seqs": 131, "length": 150, "gap_rates": [0.3282442748091603, 0.12213740458015267, 0.09923664122137404, 0.0916030534351145, 0.08396946564885496, 0.08396946564885496, 0.07633587786259542, 0.07633587786259542, 0.06870229007633588, 0.06870229007633588, 0.06870229007633588, 0.06870229007633588, 0.061068702290076333, 0.061068702290076333, 0.061068702290076333, 0.061068702290076333, 0.061068702290076333, 0.061068702290076333, 0.061068702290076333, 0.061068702290076333, 0.061068702290076333, 0.061068702290076333, 0.061068702290076333, 0.061068702290076333, 0.061068702290076333, 0.061068702290076333, 0.04580152671755725, 0.04580152671755725, 0.04580152671755725, 0.04580152671755725, 0.9389312977099237, 0.9465648854961832, 0.9465648854961832, 0.9465648854961832, 0.9465648854961832, 0.9083969465648855, 0.6564885496183206, 0.6106870229007634, 0.6030534351145038, 0.6030534351145038, 0.6030534351145038, 0.6030534351145038, 0.5954198473282443, 0.04580152671755725, 0.03816793893129771, 0.03816793893129771, 0.03816793893129771, 0.03816793893129771, 0.03816793893129771, 0.03816793893129771, 0.03816793893129771, 0.03816793893129771, 0.03816793893129771, 0.03816793893129771, 0.03816793893129771, 0.03816793893129771, 0.03816793893129771, 0.03816793893129771, 0.03816793893129771, 0.03816793893129771, 0.03816793893129771, 0.03816793893129771, 0.03816793893129771, 0.03816793893129771, 0.03816793893129771, 0.03816793893129771, 0.03816793893129771, 0.03816793893129771, 0.03816793893129771, 0.03816793893129771, 0.030534351145038167, 0.030534351145038167, 0.030534351145038167, 0.030534351145038167, 0.030534351145038167, 0.03816793893129771, 0.03816793893129771, 0.03816793893129771, 0.9312977099236641, 0.6412213740458015, 0.5572519083969466, 0.061068702290076333, 0.061068702290076333, 0.05343511450381679, 0.022900763358778626, 0.015267175572519083, 0.015267175572519083, 0.007633587786259542, 0.007633587786259542, 0.007633587786259542, 0.007633587786259542, 0.007633587786259542, 0.007633587786259542, 0.007633587786259542, 0.007633587786259542, 0.007633587786259542, 0.007633587786259542, 0.007633587786259542, 0.007633587786259542, 0.007633587786259542, 0.0, 0.0, 0.007633587786259542, 0.007633587786259542, 0.007633587786259542, 0.007633587786259542, 0.007633587786259542, 0.007633587786259542, 0.007633587786259542, 0.007633587786259542, 0.007633587786259542, 0.007633587786259542, 0.007633587786259542, 0.007633587786259542, 0.007633587786259542, 0.007633587786259542, 0.007633587786259542, 0.007633587786259542, 0.9236641221374046, 0.9312977099236641, 0.7404580152671756, 0.007633587786259542, 0.007633587786259542, 0.015267175572519083, 0.015267175572519083, 0.015267175572519083, 0.015267175572519083, 0.015267175572519083, 0.015267175572519083, 0.015267175572519083, 0.015267175572519083, 0.9389312977099237, 0.015267175572519083, 0.015267175572519083, 0.015267175572519083, 0.015267175572519083, 0.015267175572519083, 0.015267175572519083, 0.015267175572519083, 0.015267175572519083, 0.015267175572519083, 0.015267175572519083, 0.015267175572519083, 0.015267175572519083, 0.022900763358778626, 0.022900763358778626, 0.030534351145038167, 0.061068702290076333, 0.15267175572519084, 0.5267175572519084], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF2264.gap.json b/pfam_gap_rates/DUF2264.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f6a367ef6cd6a7999040931b22b2d089ade7e040
--- /dev/null
+++ b/pfam_gap_rates/DUF2264.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF2268.gap.json b/pfam_gap_rates/DUF2268.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ad2bf464e3df99bb86dbd7934679e4bab2fd337b
--- /dev/null
+++ b/pfam_gap_rates/DUF2268.gap.json
@@ -0,0 +1 @@
+{"family": "DUF2268", "n_seqs": 173, "length": 219, "gap_rates": [0.7861271676300579, 0.5722543352601156, 0.44508670520231214, 0.4046242774566474, 0.36416184971098264, 0.3468208092485549, 0.32947976878612717, 0.32947976878612717, 0.32947976878612717, 0.32947976878612717, 0.3236994219653179, 0.3179190751445087, 0.31213872832369943, 0.31213872832369943, 0.3063583815028902, 0.30057803468208094, 0.28901734104046245, 0.2832369942196532, 0.2543352601156069, 0.9017341040462428, 0.23699421965317918, 0.24277456647398843, 0.23699421965317918, 0.23121387283236994, 0.24277456647398843, 0.7745664739884393, 0.791907514450867, 0.7976878612716763, 0.815028901734104, 0.791907514450867, 0.791907514450867, 0.7745664739884393, 0.2658959537572254, 0.26011560693641617, 0.24277456647398843, 0.2023121387283237, 0.2023121387283237, 0.2023121387283237, 0.2023121387283237, 0.2023121387283237, 0.42196531791907516, 0.3583815028901734, 0.24855491329479767, 0.23121387283236994, 0.2254335260115607, 0.2138728323699422, 0.20809248554913296, 0.2138728323699422, 0.21965317919075145, 0.2138728323699422, 0.20809248554913296, 0.2023121387283237, 0.2023121387283237, 0.2023121387283237, 0.19653179190751446, 0.1791907514450867, 0.17341040462427745, 0.1676300578034682, 0.16184971098265896, 0.16184971098265896, 0.16184971098265896, 0.16184971098265896, 0.5260115606936416, 0.884393063583815, 0.15606936416184972, 0.12716763005780346, 0.12138728323699421, 0.10982658959537572, 0.08092485549132948, 0.07514450867052024, 0.06358381502890173, 0.057803468208092484, 0.9248554913294798, 0.930635838150289, 0.9248554913294798, 0.9190751445086706, 0.05202312138728324, 0.046242774566473986, 0.03468208092485549, 0.028901734104046242, 0.028901734104046242, 0.028901734104046242, 0.028901734104046242, 0.028901734104046242, 0.028901734104046242, 0.028901734104046242, 0.028901734104046242, 0.028901734104046242, 0.046242774566473986, 0.05202312138728324, 0.05202312138728324, 0.04046242774566474, 0.03468208092485549, 0.028901734104046242, 0.023121387283236993, 0.023121387283236993, 0.15028901734104047, 0.18497109826589594, 0.9479768786127167, 0.42196531791907516, 0.09248554913294797, 0.05202312138728324, 0.04046242774566474, 0.017341040462427744, 0.011560693641618497, 0.011560693641618497, 0.011560693641618497, 0.011560693641618497, 0.011560693641618497, 0.011560693641618497, 0.011560693641618497, 0.011560693641618497, 0.011560693641618497, 0.023121387283236993, 0.011560693641618497, 0.011560693641618497, 0.017341040462427744, 0.011560693641618497, 0.017341040462427744, 0.011560693641618497, 0.011560693641618497, 0.011560693641618497, 0.011560693641618497, 0.011560693641618497, 0.011560693641618497, 0.011560693641618497, 0.011560693641618497, 0.23699421965317918, 0.08092485549132948, 0.046242774566473986, 0.04046242774566474, 0.017341040462427744, 0.023121387283236993, 0.06358381502890173, 0.04046242774566474, 0.03468208092485549, 0.028901734104046242, 0.023121387283236993, 0.023121387283236993, 0.03468208092485549, 0.27167630057803466, 0.06358381502890173, 0.046242774566473986, 0.03468208092485549, 0.028901734104046242, 0.04046242774566474, 0.03468208092485549, 0.046242774566473986, 0.03468208092485549, 0.03468208092485549, 0.046242774566473986, 0.023121387283236993, 0.023121387283236993, 0.046242774566473986, 0.046242774566473986, 0.7687861271676301, 0.3236994219653179, 0.2254335260115607, 0.15606936416184972, 0.10982658959537572, 0.057803468208092484, 0.046242774566473986, 0.017341040462427744, 0.017341040462427744, 0.017341040462427744, 0.017341040462427744, 0.017341040462427744, 0.3815028901734104, 0.3236994219653179, 0.08670520231213873, 0.05202312138728324, 0.03468208092485549, 0.653179190751445, 0.6705202312138728, 0.6763005780346821, 0.6820809248554913, 0.6820809248554913, 0.6705202312138728, 0.6589595375722543, 0.6416184971098265, 0.023121387283236993, 0.023121387283236993, 0.017341040462427744, 0.03468208092485549, 0.017341040462427744, 0.017341040462427744, 0.017341040462427744, 0.023121387283236993, 0.017341040462427744, 0.017341040462427744, 0.017341040462427744, 0.017341040462427744, 0.017341040462427744, 0.017341040462427744, 0.017341040462427744, 0.017341040462427744, 0.028901734104046242, 0.028901734104046242, 0.028901734104046242, 0.023121387283236993, 0.023121387283236993, 0.03468208092485549, 0.057803468208092484, 0.7283236994219653, 0.06936416184971098, 0.08670520231213873, 0.11560693641618497, 0.1329479768786127, 0.14450867052023122, 0.15028901734104047, 0.15606936416184972, 0.15606936416184972, 0.1676300578034682, 0.1907514450867052, 0.2023121387283237, 0.2023121387283237, 0.24855491329479767, 0.3352601156069364, 0.8323699421965318], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF2273.gap.json b/pfam_gap_rates/DUF2273.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..8ecaa737bd2ea13e94f87d27bd10d9c079a7f596
--- /dev/null
+++ b/pfam_gap_rates/DUF2273.gap.json
@@ -0,0 +1 @@
+{"family": "DUF2273", "n_seqs": 201, "length": 48, "gap_rates": [0.6716417910447762, 0.31840796019900497, 0.2835820895522388, 0.23880597014925373, 0.21890547263681592, 0.20398009950248755, 0.16417910447761194, 0.12437810945273632, 0.04975124378109453, 0.014925373134328358, 0.009950248756218905, 0.009950248756218905, 0.009950248756218905, 0.009950248756218905, 0.009950248756218905, 0.009950248756218905, 0.009950248756218905, 0.009950248756218905, 0.004975124378109453, 0.004975124378109453, 0.009950248756218905, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.004975124378109453, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.014925373134328358, 0.03482587064676617, 0.05472636815920398, 0.07960199004975124, 0.12437810945273632, 0.29850746268656714], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF2277.gap.json b/pfam_gap_rates/DUF2277.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..6e682c6bb3ab58ae0d370192ac0a7460620f1a3c
--- /dev/null
+++ b/pfam_gap_rates/DUF2277.gap.json
@@ -0,0 +1 @@
+{"family": "DUF2277", "n_seqs": 181, "length": 88, "gap_rates": [0.022099447513812154, 0.022099447513812154, 0.022099447513812154, 0.022099447513812154, 0.022099447513812154, 0.022099447513812154, 0.022099447513812154, 0.011049723756906077, 0.011049723756906077, 0.13259668508287292, 0.13259668508287292, 0.11049723756906077, 0.0055248618784530384, 0.0055248618784530384, 0.8839779005524862, 0.9005524861878453, 0.8839779005524862, 0.8839779005524862, 0.0055248618784530384, 0.0055248618784530384, 0.0055248618784530384, 0.0055248618784530384, 0.0055248618784530384, 0.0055248618784530384, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0055248618784530384, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0055248618784530384, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.011049723756906077, 0.049723756906077346, 0.8011049723756906, 0.8066298342541437, 0.8121546961325967, 0.8066298342541437, 0.8066298342541437, 0.8011049723756906, 0.09392265193370165, 0.11602209944751381, 0.13259668508287292, 0.13259668508287292, 0.143646408839779, 0.1878453038674033, 0.19889502762430938, 0.20441988950276244, 0.20994475138121546, 0.27071823204419887, 0.35359116022099446], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF2283.gap.json b/pfam_gap_rates/DUF2283.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..dc325dd39618acf31cf46d0efb03905942c1f2fb
--- /dev/null
+++ b/pfam_gap_rates/DUF2283.gap.json
@@ -0,0 +1 @@
+{"family": "DUF2283", "n_seqs": 422, "length": 53, "gap_rates": [0.3696682464454976, 0.16350710900473933, 0.07109004739336493, 0.04265402843601896, 0.030805687203791468, 0.026066350710900472, 0.026066350710900472, 0.023696682464454975, 0.018957345971563982, 0.016587677725118485, 0.014218009478672985, 0.011848341232227487, 0.009478672985781991, 0.009478672985781991, 0.009478672985781991, 0.8909952606635071, 0.7535545023696683, 0.0071090047393364926, 0.0071090047393364926, 0.0071090047393364926, 0.0071090047393364926, 0.05924170616113744, 0.014218009478672985, 0.011848341232227487, 0.009478672985781991, 0.011848341232227487, 0.016587677725118485, 0.17772511848341233, 0.9454976303317536, 0.9383886255924171, 0.004739336492890996, 0.0, 0.0, 0.0, 0.002369668246445498, 0.002369668246445498, 0.002369668246445498, 0.002369668246445498, 0.08293838862559241, 0.0071090047393364926, 0.0071090047393364926, 0.0071090047393364926, 0.018957345971563982, 0.009478672985781991, 0.009478672985781991, 0.009478672985781991, 0.009478672985781991, 0.009478672985781991, 0.014218009478672985, 0.02132701421800948, 0.054502369668246446, 0.14218009478672985, 0.35545023696682465], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF2336.gap.json b/pfam_gap_rates/DUF2336.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..aac526a00b30de135e3fc12ac5480a3f337685d2
--- /dev/null
+++ b/pfam_gap_rates/DUF2336.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF2358.gap.json b/pfam_gap_rates/DUF2358.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..193d1d6423afd7c29fb9ec1ebffa17586f0cc9e5
--- /dev/null
+++ b/pfam_gap_rates/DUF2358.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF2362.gap.json b/pfam_gap_rates/DUF2362.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c7781c52258f745161f57bfc9296f4b69ebcdc4d
--- /dev/null
+++ b/pfam_gap_rates/DUF2362.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF2370.gap.json b/pfam_gap_rates/DUF2370.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c1f3acaf3b205e658ea882ce76fedca3cf991180
--- /dev/null
+++ b/pfam_gap_rates/DUF2370.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF2401.gap.json b/pfam_gap_rates/DUF2401.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..60e3510a7cb82fc992fe026fd2f590eb78778155
--- /dev/null
+++ b/pfam_gap_rates/DUF2401.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF241.gap.json b/pfam_gap_rates/DUF241.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..10d869b84b690ff688667f3d21c32a42859a5368
--- /dev/null
+++ b/pfam_gap_rates/DUF241.gap.json
@@ -0,0 +1 @@
+{"family": "DUF241", "n_seqs": 664, "length": 253, "gap_rates": [0.5105421686746988, 0.3207831325301205, 0.2740963855421687, 0.2560240963855422, 0.24849397590361447, 0.24849397590361447, 0.24548192771084337, 0.24246987951807228, 0.2394578313253012, 0.23343373493975902, 0.23042168674698796, 0.2289156626506024, 0.2289156626506024, 0.22590361445783133, 0.22740963855421686, 0.22590361445783133, 0.2289156626506024, 0.22740963855421686, 0.22590361445783133, 0.22289156626506024, 0.22289156626506024, 0.22590361445783133, 0.22740963855421686, 0.23343373493975902, 0.22439759036144577, 0.23042168674698796, 0.24246987951807228, 0.5180722891566265, 0.5030120481927711, 0.26656626506024095, 0.22439759036144577, 0.20481927710843373, 0.19427710843373494, 0.18825301204819278, 0.17921686746987953, 0.17620481927710843, 0.17319277108433734, 0.1716867469879518, 0.17018072289156627, 0.1686746987951807, 0.1686746987951807, 0.17018072289156627, 0.1746987951807229, 0.1716867469879518, 0.17018072289156627, 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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF2418.gap.json b/pfam_gap_rates/DUF2418.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..bde21bea00d7bf97ad8c192702e2cba932a00c54
--- /dev/null
+++ b/pfam_gap_rates/DUF2418.gap.json
@@ -0,0 +1 @@
+{"family": "DUF2418", "n_seqs": 126, "length": 106, "gap_rates": [0.5079365079365079, 0.14285714285714285, 0.07142857142857142, 0.05555555555555555, 0.05555555555555555, 0.047619047619047616, 0.047619047619047616, 0.047619047619047616, 0.047619047619047616, 0.047619047619047616, 0.047619047619047616, 0.047619047619047616, 0.047619047619047616, 0.047619047619047616, 0.047619047619047616, 0.047619047619047616, 0.047619047619047616, 0.047619047619047616, 0.047619047619047616, 0.05555555555555555, 0.05555555555555555, 0.05555555555555555, 0.05555555555555555, 0.05555555555555555, 0.05555555555555555, 0.05555555555555555, 0.05555555555555555, 0.047619047619047616, 0.047619047619047616, 0.047619047619047616, 0.047619047619047616, 0.047619047619047616, 0.15873015873015872, 0.14285714285714285, 0.4603174603174603, 0.47619047619047616, 0.48412698412698413, 0.49206349206349204, 0.5079365079365079, 0.49206349206349204, 0.47619047619047616, 0.46825396825396826, 0.4126984126984127, 0.047619047619047616, 0.03968253968253968, 0.03968253968253968, 0.03968253968253968, 0.03968253968253968, 0.03968253968253968, 0.03968253968253968, 0.03968253968253968, 0.031746031746031744, 0.03968253968253968, 0.031746031746031744, 0.023809523809523808, 0.015873015873015872, 0.015873015873015872, 0.015873015873015872, 0.015873015873015872, 0.007936507936507936, 0.007936507936507936, 0.007936507936507936, 0.0, 0.0, 0.0, 0.9444444444444444, 0.0, 0.0, 0.007936507936507936, 0.007936507936507936, 0.007936507936507936, 0.007936507936507936, 0.007936507936507936, 0.007936507936507936, 0.007936507936507936, 0.007936507936507936, 0.007936507936507936, 0.007936507936507936, 0.007936507936507936, 0.007936507936507936, 0.007936507936507936, 0.007936507936507936, 0.015873015873015872, 0.015873015873015872, 0.015873015873015872, 0.015873015873015872, 0.015873015873015872, 0.015873015873015872, 0.023809523809523808, 0.023809523809523808, 0.023809523809523808, 0.03968253968253968, 0.023809523809523808, 0.023809523809523808, 0.03968253968253968, 0.03968253968253968, 0.06349206349206349, 0.06349206349206349, 0.07936507936507936, 0.07936507936507936, 0.07936507936507936, 0.07936507936507936, 0.07936507936507936, 0.07936507936507936, 0.07936507936507936, 0.3492063492063492], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF2490.gap.json b/pfam_gap_rates/DUF2490.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..2df410aa4c9a549a70c1a9ef3faac4a2c4f01a27
--- /dev/null
+++ b/pfam_gap_rates/DUF2490.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF2516.gap.json b/pfam_gap_rates/DUF2516.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e49032988b2888484071a630bcd6ccea57fdee34
--- /dev/null
+++ b/pfam_gap_rates/DUF2516.gap.json
@@ -0,0 +1 @@
+{"family": "DUF2516", "n_seqs": 157, "length": 101, "gap_rates": [0.7579617834394905, 0.42038216560509556, 0.2929936305732484, 0.1910828025477707, 0.1337579617834395, 0.10828025477707007, 0.050955414012738856, 0.03184713375796178, 0.012738853503184714, 0.012738853503184714, 0.012738853503184714, 0.012738853503184714, 0.012738853503184714, 0.012738853503184714, 0.006369426751592357, 0.006369426751592357, 0.006369426751592357, 0.006369426751592357, 0.006369426751592357, 0.006369426751592357, 0.006369426751592357, 0.006369426751592357, 0.006369426751592357, 0.006369426751592357, 0.006369426751592357, 0.006369426751592357, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.006369426751592357, 0.006369426751592357, 0.006369426751592357, 0.025477707006369428, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.7197452229299363, 0.7898089171974523, 0.8726114649681529, 0.9426751592356688, 0.9299363057324841, 0.8280254777070064, 0.7515923566878981, 0.6496815286624203, 0.4713375796178344, 0.40764331210191085, 0.15286624203821655, 0.11464968152866242, 0.01910828025477707, 0.012738853503184714, 0.006369426751592357, 0.006369426751592357, 0.9426751592356688, 0.006369426751592357, 0.006369426751592357, 0.006369426751592357, 0.006369426751592357, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.006369426751592357, 0.01910828025477707, 0.01910828025477707, 0.01910828025477707, 0.01910828025477707, 0.050955414012738856, 0.050955414012738856, 0.050955414012738856, 0.05732484076433121, 0.08917197452229299, 0.10191082802547771, 0.15286624203821655, 0.2611464968152866, 0.5159235668789809, 0.9490445859872612], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF2764.gap.json b/pfam_gap_rates/DUF2764.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..2c0611cb9209279a0ab369c83b3919a32f366993
--- /dev/null
+++ b/pfam_gap_rates/DUF2764.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF2800.gap.json b/pfam_gap_rates/DUF2800.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..da5a9796a1c2c95b7c67d31f368e89511be7c562
--- /dev/null
+++ b/pfam_gap_rates/DUF2800.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF2809.gap.json b/pfam_gap_rates/DUF2809.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..98aaf27bfde589e0f33c5ac690a4b6d7da707c58
--- /dev/null
+++ b/pfam_gap_rates/DUF2809.gap.json
@@ -0,0 +1 @@
+{"family": "DUF2809", "n_seqs": 182, "length": 86, "gap_rates": [0.8901098901098901, 0.6978021978021978, 0.35714285714285715, 0.24725274725274726, 0.13186813186813187, 0.08241758241758242, 0.06043956043956044, 0.027472527472527472, 0.016483516483516484, 0.01098901098901099, 0.01098901098901099, 0.01098901098901099, 0.01098901098901099, 0.01098901098901099, 0.01098901098901099, 0.01098901098901099, 0.01098901098901099, 0.01098901098901099, 0.01098901098901099, 0.01098901098901099, 0.01098901098901099, 0.01098901098901099, 0.01098901098901099, 0.01098901098901099, 0.01098901098901099, 0.01098901098901099, 0.01098901098901099, 0.01098901098901099, 0.01098901098901099, 0.01098901098901099, 0.016483516483516484, 0.01098901098901099, 0.01098901098901099, 0.01098901098901099, 0.3076923076923077, 0.016483516483516484, 0.01098901098901099, 0.01098901098901099, 0.01098901098901099, 0.01098901098901099, 0.01098901098901099, 0.01098901098901099, 0.01098901098901099, 0.01098901098901099, 0.01098901098901099, 0.01098901098901099, 0.01098901098901099, 0.01098901098901099, 0.005494505494505495, 0.005494505494505495, 0.0, 0.0, 0.0, 0.0, 0.005494505494505495, 0.01098901098901099, 0.01098901098901099, 0.016483516483516484, 0.027472527472527472, 0.02197802197802198, 0.02197802197802198, 0.1978021978021978, 0.016483516483516484, 0.01098901098901099, 0.01098901098901099, 0.016483516483516484, 0.02197802197802198, 0.027472527472527472, 0.027472527472527472, 0.02197802197802198, 0.02197802197802198, 0.02197802197802198, 0.02197802197802198, 0.02197802197802198, 0.02197802197802198, 0.027472527472527472, 0.027472527472527472, 0.027472527472527472, 0.027472527472527472, 0.027472527472527472, 0.027472527472527472, 0.027472527472527472, 0.027472527472527472, 0.038461538461538464, 0.06043956043956044, 0.1813186813186813], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF2834.gap.json b/pfam_gap_rates/DUF2834.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..7a0c0f77d22fd5bde23e400551a5acd514fb58e9
--- /dev/null
+++ b/pfam_gap_rates/DUF2834.gap.json
@@ -0,0 +1 @@
+{"family": "DUF2834", "n_seqs": 128, "length": 111, "gap_rates": [0.34375, 0.234375, 0.2109375, 0.1875, 0.15625, 0.15625, 0.1484375, 0.1484375, 0.1328125, 0.1171875, 0.1171875, 0.109375, 0.1015625, 0.109375, 0.078125, 0.0703125, 0.0703125, 0.0703125, 0.0703125, 0.0703125, 0.0703125, 0.0703125, 0.0703125, 0.09375, 0.2265625, 0.7734375, 0.875, 0.90625, 0.921875, 0.9296875, 0.921875, 0.9140625, 0.890625, 0.8515625, 0.734375, 0.171875, 0.140625, 0.109375, 0.0546875, 0.0390625, 0.0390625, 0.0390625, 0.0390625, 0.0390625, 0.0390625, 0.0390625, 0.046875, 0.046875, 0.90625, 0.046875, 0.0546875, 0.046875, 0.046875, 0.0390625, 0.0390625, 0.0390625, 0.0390625, 0.0390625, 0.0390625, 0.03125, 0.0078125, 0.0078125, 0.0078125, 0.0078125, 0.0078125, 0.0078125, 0.0078125, 0.9296875, 0.015625, 0.015625, 0.015625, 0.0078125, 0.0078125, 0.0078125, 0.0078125, 0.0078125, 0.015625, 0.203125, 0.171875, 0.1640625, 0.0234375, 0.0234375, 0.015625, 0.015625, 0.7578125, 0.8359375, 0.7109375, 0.015625, 0.015625, 0.015625, 0.015625, 0.015625, 0.015625, 0.015625, 0.0390625, 0.03125, 0.03125, 0.046875, 0.0390625, 0.0390625, 0.0390625, 0.0390625, 0.0390625, 0.0390625, 0.0390625, 0.0390625, 0.0546875, 0.09375, 0.1328125, 0.2265625, 0.53125], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF2847.gap.json b/pfam_gap_rates/DUF2847.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..46ed9829430e9cc5a7390653634848069ff0d3c3
--- /dev/null
+++ b/pfam_gap_rates/DUF2847.gap.json
@@ -0,0 +1 @@
+{"family": "DUF2847", "n_seqs": 192, "length": 104, "gap_rates": [0.8072916666666666, 0.19791666666666666, 0.07291666666666667, 0.06770833333333333, 0.0625, 0.057291666666666664, 0.052083333333333336, 0.046875, 0.046875, 0.046875, 0.046875, 0.046875, 0.041666666666666664, 0.041666666666666664, 0.052083333333333336, 0.036458333333333336, 0.036458333333333336, 0.041666666666666664, 0.4114583333333333, 0.390625, 0.026041666666666668, 0.020833333333333332, 0.015625, 0.015625, 0.015625, 0.015625, 0.015625, 0.015625, 0.0625, 0.015625, 0.015625, 0.015625, 0.015625, 0.015625, 0.005208333333333333, 0.005208333333333333, 0.005208333333333333, 0.005208333333333333, 0.005208333333333333, 0.005208333333333333, 0.005208333333333333, 0.005208333333333333, 0.005208333333333333, 0.005208333333333333, 0.005208333333333333, 0.005208333333333333, 0.020833333333333332, 0.020833333333333332, 0.18229166666666666, 0.4583333333333333, 0.6822916666666666, 0.026041666666666668, 0.015625, 0.010416666666666666, 0.005208333333333333, 0.005208333333333333, 0.005208333333333333, 0.0, 0.0, 0.0, 0.005208333333333333, 0.005208333333333333, 0.005208333333333333, 0.005208333333333333, 0.005208333333333333, 0.005208333333333333, 0.005208333333333333, 0.005208333333333333, 0.005208333333333333, 0.005208333333333333, 0.005208333333333333, 0.005208333333333333, 0.005208333333333333, 0.005208333333333333, 0.005208333333333333, 0.005208333333333333, 0.005208333333333333, 0.005208333333333333, 0.005208333333333333, 0.005208333333333333, 0.005208333333333333, 0.005208333333333333, 0.005208333333333333, 0.005208333333333333, 0.005208333333333333, 0.005208333333333333, 0.005208333333333333, 0.005208333333333333, 0.005208333333333333, 0.005208333333333333, 0.005208333333333333, 0.005208333333333333, 0.005208333333333333, 0.005208333333333333, 0.005208333333333333, 0.005208333333333333, 0.005208333333333333, 0.005208333333333333, 0.005208333333333333, 0.010416666666666666, 0.020833333333333332, 0.057291666666666664, 0.15104166666666666, 0.328125], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF2911.gap.json b/pfam_gap_rates/DUF2911.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d81b9c8d0055ee544c22444c221c95fb01eca058
--- /dev/null
+++ b/pfam_gap_rates/DUF2911.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF2914.gap.json b/pfam_gap_rates/DUF2914.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..5875dde9be4fe607c240638feaa39732af9a9b98
--- /dev/null
+++ b/pfam_gap_rates/DUF2914.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF2921.gap.json b/pfam_gap_rates/DUF2921.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..8deae3fe8a5645a8700bbb188c7709ab631c2bdf
--- /dev/null
+++ b/pfam_gap_rates/DUF2921.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF2958.gap.json b/pfam_gap_rates/DUF2958.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..5a16655b7ffa976b3a826bc24a0cd6aed05bc8da
--- /dev/null
+++ b/pfam_gap_rates/DUF2958.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF2985.gap.json b/pfam_gap_rates/DUF2985.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..072be70f65571114d4a896b3d16da44f1bd4136b
--- /dev/null
+++ b/pfam_gap_rates/DUF2985.gap.json
@@ -0,0 +1 @@
+{"family": "DUF2985", "n_seqs": 263, "length": 85, "gap_rates": [0.26996197718631176, 0.08745247148288973, 0.08365019011406843, 0.07984790874524715, 0.07604562737642585, 0.07224334600760456, 0.060836501901140684, 0.060836501901140684, 0.060836501901140684, 0.049429657794676805, 0.045627376425855515, 0.04182509505703422, 0.034220532319391636, 0.034220532319391636, 0.034220532319391636, 0.034220532319391636, 0.03802281368821293, 0.034220532319391636, 0.034220532319391636, 0.034220532319391636, 0.034220532319391636, 0.03802281368821293, 0.026615969581749048, 0.026615969581749048, 0.026615969581749048, 0.026615969581749048, 0.026615969581749048, 0.026615969581749048, 0.026615969581749048, 0.030418250950570342, 0.030418250950570342, 0.030418250950570342, 0.022813688212927757, 0.026615969581749048, 0.026615969581749048, 0.28517110266159695, 0.12167300380228137, 0.7224334600760456, 0.7224334600760456, 0.7300380228136882, 0.7224334600760456, 0.7224334600760456, 0.7224334600760456, 0.26996197718631176, 0.23574144486692014, 0.6425855513307985, 0.026615969581749048, 0.022813688212927757, 0.022813688212927757, 0.026615969581749048, 0.026615969581749048, 0.026615969581749048, 0.030418250950570342, 0.030418250950570342, 0.026615969581749048, 0.022813688212927757, 0.022813688212927757, 0.022813688212927757, 0.019011406844106463, 0.026615969581749048, 0.022813688212927757, 0.022813688212927757, 0.030418250950570342, 0.030418250950570342, 0.030418250950570342, 0.030418250950570342, 0.026615969581749048, 0.030418250950570342, 0.030418250950570342, 0.034220532319391636, 0.03802281368821293, 0.03802281368821293, 0.04182509505703422, 0.04182509505703422, 0.04182509505703422, 0.04182509505703422, 0.04182509505703422, 0.04182509505703422, 0.04182509505703422, 0.04182509505703422, 0.045627376425855515, 0.049429657794676805, 0.06844106463878327, 0.11026615969581749, 0.44106463878326996], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF302.gap.json b/pfam_gap_rates/DUF302.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..99a3dd77ee76c06327ce114587578c7956558731
--- /dev/null
+++ b/pfam_gap_rates/DUF302.gap.json
@@ -0,0 +1 @@
+{"family": "DUF302", "n_seqs": 785, "length": 66, "gap_rates": [0.36178343949044584, 0.2840764331210191, 0.24076433121019108, 0.20636942675159237, 0.18343949044585986, 0.17197452229299362, 0.15286624203821655, 0.4178343949044586, 0.14267515923566879, 0.1375796178343949, 0.12738853503184713, 0.11464968152866242, 0.10445859872611465, 0.0929936305732484, 0.14522292993630573, 0.044585987261146494, 0.034394904458598725, 0.025477707006369428, 0.017834394904458598, 0.014012738853503185, 0.006369426751592357, 0.005095541401273885, 0.005095541401273885, 0.005095541401273885, 0.003821656050955414, 0.003821656050955414, 0.003821656050955414, 0.003821656050955414, 0.003821656050955414, 0.003821656050955414, 0.003821656050955414, 0.003821656050955414, 0.003821656050955414, 0.003821656050955414, 0.003821656050955414, 0.003821656050955414, 0.0025477707006369425, 0.0025477707006369425, 0.0025477707006369425, 0.0025477707006369425, 0.0025477707006369425, 0.0012738853503184713, 0.0012738853503184713, 0.0012738853503184713, 0.0012738853503184713, 0.0012738853503184713, 0.0012738853503184713, 0.0012738853503184713, 0.0012738853503184713, 0.0012738853503184713, 0.0025477707006369425, 0.9401273885350319, 0.43439490445859874, 0.0025477707006369425, 0.0025477707006369425, 0.9261146496815287, 0.003821656050955414, 0.007643312101910828, 0.02165605095541401, 0.025477707006369428, 0.03184713375796178, 0.044585987261146494, 0.07006369426751592, 0.13503184713375796, 0.22547770700636943, 0.3414012738853503], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF3043.gap.json b/pfam_gap_rates/DUF3043.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..9c9a50a3c9cebfc0037f49b68a29343346225a4f
--- /dev/null
+++ b/pfam_gap_rates/DUF3043.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF3100.gap.json b/pfam_gap_rates/DUF3100.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..88161422da72edd62eaa5fa0cc43e07a7933eec4
--- /dev/null
+++ b/pfam_gap_rates/DUF3100.gap.json
@@ -0,0 +1 @@
+{"family": "DUF3100", "n_seqs": 136, "length": 252, "gap_rates": [0.4338235294117647, 0.14705882352941177, 0.051470588235294115, 0.03676470588235294, 0.029411764705882353, 0.029411764705882353, 0.029411764705882353, 0.029411764705882353, 0.029411764705882353, 0.029411764705882353, 0.029411764705882353, 0.07352941176470588, 0.07352941176470588, 0.07352941176470588, 0.07352941176470588, 0.022058823529411766, 0.9411764705882353, 0.022058823529411766, 0.022058823529411766, 0.022058823529411766, 0.022058823529411766, 0.022058823529411766, 0.022058823529411766, 0.022058823529411766, 0.022058823529411766, 0.022058823529411766, 0.022058823529411766, 0.022058823529411766, 0.022058823529411766, 0.022058823529411766, 0.022058823529411766, 0.022058823529411766, 0.022058823529411766, 0.022058823529411766, 0.029411764705882353, 0.029411764705882353, 0.04411764705882353, 0.051470588235294115, 0.03676470588235294, 0.6176470588235294, 0.625, 0.7573529411764706, 0.8823529411764706, 0.8823529411764706, 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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF3105.gap.json b/pfam_gap_rates/DUF3105.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d85d05883b957c4a341367b54a8c1c0ad9fe7654
--- /dev/null
+++ b/pfam_gap_rates/DUF3105.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF3110.gap.json b/pfam_gap_rates/DUF3110.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..333f54231bd848974cf411124d9735daa2594874
--- /dev/null
+++ b/pfam_gap_rates/DUF3110.gap.json
@@ -0,0 +1 @@
+{"family": "DUF3110", "n_seqs": 113, "length": 106, "gap_rates": [0.40707964601769914, 0.2920353982300885, 0.2831858407079646, 0.2831858407079646, 0.2831858407079646, 0.2831858407079646, 0.2831858407079646, 0.2831858407079646, 0.25663716814159293, 0.24778761061946902, 0.23893805309734514, 0.23008849557522124, 0.23008849557522124, 0.23008849557522124, 0.22123893805309736, 0.21238938053097345, 0.21238938053097345, 0.19469026548672566, 0.1592920353982301, 0.7876106194690266, 0.9292035398230089, 0.8230088495575221, 0.7876106194690266, 0.12389380530973451, 0.1504424778761062, 0.02654867256637168, 0.8230088495575221, 0.9026548672566371, 0.9469026548672567, 0.9380530973451328, 0.831858407079646, 0.6460176991150443, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.008849557522123894, 0.008849557522123894, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.017699115044247787, 0.017699115044247787, 0.9469026548672567, 0.9380530973451328, 0.017699115044247787, 0.0, 0.0, 0.008849557522123894, 0.017699115044247787, 0.008849557522123894, 0.02654867256637168, 0.02654867256637168, 0.02654867256637168, 0.02654867256637168, 0.02654867256637168, 0.035398230088495575, 0.02654867256637168, 0.02654867256637168, 0.02654867256637168, 0.035398230088495575, 0.035398230088495575, 0.035398230088495575, 0.035398230088495575, 0.035398230088495575, 0.035398230088495575, 0.04424778761061947, 0.04424778761061947, 0.061946902654867256, 0.08849557522123894, 0.09734513274336283, 0.09734513274336283, 0.11504424778761062, 0.1415929203539823, 0.9380530973451328, 0.168141592920354, 0.19469026548672566, 0.21238938053097345, 0.8761061946902655, 0.8849557522123894, 0.8849557522123894, 0.8849557522123894, 0.8849557522123894, 0.8849557522123894, 0.8849557522123894, 0.8849557522123894, 0.8761061946902655, 0.23893805309734514, 0.24778761061946902, 0.30973451327433627, 0.30973451327433627, 0.30973451327433627, 0.3274336283185841, 0.4336283185840708], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF3129.gap.json b/pfam_gap_rates/DUF3129.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..4d7e86721502843c3c09cd362d7e7f44ba7f57ed
--- /dev/null
+++ b/pfam_gap_rates/DUF3129.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF3159.gap.json b/pfam_gap_rates/DUF3159.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d9604c3660adc438c5109068134276003d3b13ac
--- /dev/null
+++ b/pfam_gap_rates/DUF3159.gap.json
@@ -0,0 +1 @@
+{"family": "DUF3159", "n_seqs": 226, "length": 199, "gap_rates": [0.15486725663716813, 0.11061946902654868, 0.09734513274336283, 0.09734513274336283, 0.08849557522123894, 0.08849557522123894, 0.07964601769911504, 0.0752212389380531, 0.061946902654867256, 0.05752212389380531, 0.04424778761061947, 0.035398230088495575, 0.035398230088495575, 0.035398230088495575, 0.035398230088495575, 0.035398230088495575, 0.030973451327433628, 0.030973451327433628, 0.030973451327433628, 0.030973451327433628, 0.030973451327433628, 0.030973451327433628, 0.8495575221238938, 0.3584070796460177, 0.030973451327433628, 0.030973451327433628, 0.022123893805309734, 0.022123893805309734, 0.02654867256637168, 0.022123893805309734, 0.022123893805309734, 0.022123893805309734, 0.022123893805309734, 0.022123893805309734, 0.022123893805309734, 0.022123893805309734, 0.022123893805309734, 0.022123893805309734, 0.022123893805309734, 0.022123893805309734, 0.022123893805309734, 0.022123893805309734, 0.022123893805309734, 0.022123893805309734, 0.022123893805309734, 0.022123893805309734, 0.022123893805309734, 0.022123893805309734, 0.022123893805309734, 0.022123893805309734, 0.022123893805309734, 0.022123893805309734, 0.022123893805309734, 0.022123893805309734, 0.022123893805309734, 0.022123893805309734, 0.022123893805309734, 0.022123893805309734, 0.022123893805309734, 0.022123893805309734, 0.022123893805309734, 0.022123893805309734, 0.022123893805309734, 0.022123893805309734, 0.02654867256637168, 0.022123893805309734, 0.022123893805309734, 0.022123893805309734, 0.022123893805309734, 0.022123893805309734, 0.022123893805309734, 0.022123893805309734, 0.022123893805309734, 0.022123893805309734, 0.02654867256637168, 0.02654867256637168, 0.02654867256637168, 0.02654867256637168, 0.02654867256637168, 0.02654867256637168, 0.02654867256637168, 0.02654867256637168, 0.02654867256637168, 0.02654867256637168, 0.02654867256637168, 0.02654867256637168, 0.02654867256637168, 0.02654867256637168, 0.02654867256637168, 0.02654867256637168, 0.02654867256637168, 0.02654867256637168, 0.02654867256637168, 0.02654867256637168, 0.02654867256637168, 0.02654867256637168, 0.02654867256637168, 0.02654867256637168, 0.02654867256637168, 0.02654867256637168, 0.02654867256637168, 0.02654867256637168, 0.02654867256637168, 0.02654867256637168, 0.02654867256637168, 0.02654867256637168, 0.02654867256637168, 0.02654867256637168, 0.02654867256637168, 0.02654867256637168, 0.02654867256637168, 0.02654867256637168, 0.030973451327433628, 0.03982300884955752, 0.04424778761061947, 0.02654867256637168, 0.04424778761061947, 0.915929203539823, 0.9203539823008849, 0.9292035398230089, 0.9380530973451328, 0.9336283185840708, 0.9247787610619469, 0.915929203539823, 0.9026548672566371, 0.030973451327433628, 0.030973451327433628, 0.030973451327433628, 0.9203539823008849, 0.02654867256637168, 0.022123893805309734, 0.022123893805309734, 0.022123893805309734, 0.022123893805309734, 0.022123893805309734, 0.022123893805309734, 0.022123893805309734, 0.022123893805309734, 0.022123893805309734, 0.022123893805309734, 0.022123893805309734, 0.022123893805309734, 0.022123893805309734, 0.022123893805309734, 0.022123893805309734, 0.022123893805309734, 0.022123893805309734, 0.022123893805309734, 0.022123893805309734, 0.022123893805309734, 0.022123893805309734, 0.022123893805309734, 0.022123893805309734, 0.022123893805309734, 0.022123893805309734, 0.022123893805309734, 0.022123893805309734, 0.02654867256637168, 0.022123893805309734, 0.022123893805309734, 0.022123893805309734, 0.022123893805309734, 0.022123893805309734, 0.022123893805309734, 0.022123893805309734, 0.022123893805309734, 0.9247787610619469, 0.9247787610619469, 0.022123893805309734, 0.022123893805309734, 0.022123893805309734, 0.022123893805309734, 0.022123893805309734, 0.022123893805309734, 0.022123893805309734, 0.022123893805309734, 0.030973451327433628, 0.02654867256637168, 0.02654867256637168, 0.02654867256637168, 0.022123893805309734, 0.022123893805309734, 0.022123893805309734, 0.02654867256637168, 0.022123893805309734, 0.022123893805309734, 0.02654867256637168, 0.02654867256637168, 0.02654867256637168, 0.02654867256637168, 0.030973451327433628, 0.05309734513274336, 0.061946902654867256, 0.07079646017699115, 0.09734513274336283, 0.1504424778761062, 0.3230088495575221, 0.49557522123893805, 0.9070796460176991], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF3223.gap.json b/pfam_gap_rates/DUF3223.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..46030688dfa04cd4ecd16f93be4f5cf87635946e
--- /dev/null
+++ b/pfam_gap_rates/DUF3223.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF3295.gap.json b/pfam_gap_rates/DUF3295.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..2b35673f1fd36f1e8df882a8e3f6488d290556e4
--- /dev/null
+++ b/pfam_gap_rates/DUF3295.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF3297.gap.json b/pfam_gap_rates/DUF3297.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e0d5d28281b8eb2ebbbf1180e95b884cbbeaab81
--- /dev/null
+++ b/pfam_gap_rates/DUF3297.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF3313.gap.json b/pfam_gap_rates/DUF3313.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..4cc52a8ab719b35ff0fda713817430bbe40b6395
--- /dev/null
+++ b/pfam_gap_rates/DUF3313.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF3364.gap.json b/pfam_gap_rates/DUF3364.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..adcea4f9165739e81097b55e4cbcc3aa7038bfbb
--- /dev/null
+++ b/pfam_gap_rates/DUF3364.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF3375.gap.json b/pfam_gap_rates/DUF3375.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..492b66673bf31c959f5103ea07c10c3d54bed4cf
--- /dev/null
+++ b/pfam_gap_rates/DUF3375.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF3384.gap.json b/pfam_gap_rates/DUF3384.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d5daccf703d03992f5a60c866777ab7455042cdc
--- /dev/null
+++ b/pfam_gap_rates/DUF3384.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF3391.gap.json b/pfam_gap_rates/DUF3391.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f2e1137c0b9519838eff9cf684cdf29523bc722a
--- /dev/null
+++ b/pfam_gap_rates/DUF3391.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF340.gap.json b/pfam_gap_rates/DUF340.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ba20500178260bad7842fc788cb11126b0ca5307
--- /dev/null
+++ b/pfam_gap_rates/DUF340.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF3402.gap.json b/pfam_gap_rates/DUF3402.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..8b98194de29c3e327985c000b150ad26e458fb11
--- /dev/null
+++ b/pfam_gap_rates/DUF3402.gap.json
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF3421.gap.json b/pfam_gap_rates/DUF3421.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..914d7e914de984f3610fd67f092e6f4c9b59e57f
--- /dev/null
+++ b/pfam_gap_rates/DUF3421.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF3431.gap.json b/pfam_gap_rates/DUF3431.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..74c1111005d53ea9ad6dcfdfc2d7c33c5d38efb2
--- /dev/null
+++ b/pfam_gap_rates/DUF3431.gap.json
@@ -0,0 +1 @@
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diff --git a/pfam_gap_rates/DUF3441.gap.json b/pfam_gap_rates/DUF3441.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f09a7b4055415566aa1a0ff7e197d030157d878d
--- /dev/null
+++ b/pfam_gap_rates/DUF3441.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF3450.gap.json b/pfam_gap_rates/DUF3450.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..88102916b32a0adec27c1901886c0f44bcb3db3d
--- /dev/null
+++ b/pfam_gap_rates/DUF3450.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF3452.gap.json b/pfam_gap_rates/DUF3452.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..648aeaf67f5b97c6a9fc02c1ccfdd84a4c61be9d
--- /dev/null
+++ b/pfam_gap_rates/DUF3452.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF346.gap.json b/pfam_gap_rates/DUF346.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..37d8290a56d44c3768926a2842e5cc0c9fc6a397
--- /dev/null
+++ b/pfam_gap_rates/DUF346.gap.json
@@ -0,0 +1 @@
+{"family": "DUF346", "n_seqs": 129, "length": 43, "gap_rates": [0.813953488372093, 0.7906976744186046, 0.7829457364341085, 0.24031007751937986, 0.007751937984496124, 0.007751937984496124, 0.007751937984496124, 0.007751937984496124, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.10852713178294573, 0.023255813953488372, 0.023255813953488372, 0.015503875968992248, 0.6821705426356589, 0.24031007751937986, 0.23255813953488372, 0.21705426356589147, 0.023255813953488372, 0.015503875968992248, 0.015503875968992248, 0.49612403100775193, 0.5193798449612403, 0.4806201550387597, 0.015503875968992248, 0.015503875968992248, 0.015503875968992248, 0.015503875968992248, 0.05426356589147287, 0.06201550387596899, 0.07751937984496124, 0.09302325581395349, 0.16279069767441862, 0.3953488372093023], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF347.gap.json b/pfam_gap_rates/DUF347.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..cd7da481412becbf573b6c43c11f7c6ca4411e31
--- /dev/null
+++ b/pfam_gap_rates/DUF347.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF3471.gap.json b/pfam_gap_rates/DUF3471.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ea54473e9934d561782bcfe574f8e201da684738
--- /dev/null
+++ b/pfam_gap_rates/DUF3471.gap.json
@@ -0,0 +1 @@
+{"family": "DUF3471", "n_seqs": 347, "length": 123, "gap_rates": [0.622478386167147, 0.4207492795389049, 0.31412103746397696, 0.2276657060518732, 0.14985590778097982, 0.10951008645533142, 0.08645533141210375, 0.06051873198847262, 0.05475504322766571, 0.040345821325648415, 0.03170028818443804, 0.01440922190201729, 0.011527377521613832, 0.002881844380403458, 0.002881844380403458, 0.002881844380403458, 0.002881844380403458, 0.002881844380403458, 0.005763688760806916, 0.005763688760806916, 0.002881844380403458, 0.002881844380403458, 0.002881844380403458, 0.005763688760806916, 0.8904899135446686, 0.005763688760806916, 0.002881844380403458, 0.002881844380403458, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.9193083573487032, 0.002881844380403458, 0.002881844380403458, 0.0, 0.005763688760806916, 0.020172910662824207, 0.01440922190201729, 0.2132564841498559, 0.207492795389049, 0.0345821325648415, 0.03170028818443804, 0.2881844380403458, 0.1988472622478386, 0.12103746397694524, 0.08645533141210375, 0.02881844380403458, 0.8270893371757925, 0.8559077809798271, 0.654178674351585, 0.0, 0.0, 0.0, 0.0, 0.005763688760806916, 0.002881844380403458, 0.002881844380403458, 0.002881844380403458, 0.9135446685878963, 0.005763688760806916, 0.005763688760806916, 0.22478386167146974, 0.30547550432276654, 0.3112391930835735, 0.3285302593659942, 0.31988472622478387, 0.3400576368876081, 0.345821325648415, 0.7002881844380403, 0.829971181556196, 0.9106628242074928, 0.9193083573487032, 0.9365994236311239, 0.9221902017291066, 0.9106628242074928, 0.8703170028818443, 0.8011527377521613, 0.654178674351585, 0.02881844380403458, 0.069164265129683, 0.043227665706051875, 0.03170028818443804, 0.0345821325648415, 0.0345821325648415, 0.0345821325648415, 0.0345821325648415, 0.0345821325648415, 0.05475504322766571, 0.08357348703170028, 0.21037463976945245, 0.07492795389048991, 0.069164265129683, 0.07492795389048991, 0.09510086455331412, 0.08357348703170028, 0.09221902017291066, 0.09510086455331412, 0.09510086455331412, 0.10086455331412104, 0.11815561959654179, 0.13544668587896252, 0.7982708933717579, 0.8155619596541787, 0.8328530259365994, 0.8069164265129684, 0.7463976945244957, 0.5994236311239193, 0.6138328530259366, 0.5331412103746398, 0.5590778097982709, 0.5561959654178674, 0.590778097982709, 0.6023054755043228, 0.6109510086455331, 0.6138328530259366, 0.6138328530259366, 0.6368876080691642, 0.6657060518731989, 0.7550432276657061, 0.9164265129682997], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF348.gap.json b/pfam_gap_rates/DUF348.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b423de59f671351b1a732f0e56c70fbaaef3074f
--- /dev/null
+++ b/pfam_gap_rates/DUF348.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF3482.gap.json b/pfam_gap_rates/DUF3482.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..5b623a1c84c6d45806e2f43fad0fa9532d01cc0b
--- /dev/null
+++ b/pfam_gap_rates/DUF3482.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF3515.gap.json b/pfam_gap_rates/DUF3515.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c883722c07869b0bcd85e2652b43bf14447cfcdc
--- /dev/null
+++ b/pfam_gap_rates/DUF3515.gap.json
@@ -0,0 +1 @@
+{"family": "DUF3515", "n_seqs": 202, "length": 193, "gap_rates": [0.8861386138613861, 0.7475247524752475, 0.7128712871287128, 0.6881188118811881, 0.6485148514851485, 0.6435643564356436, 0.6089108910891089, 0.5792079207920792, 0.5594059405940595, 0.5495049504950495, 0.5396039603960396, 0.5198019801980198, 0.5148514851485149, 0.5099009900990099, 0.5099009900990099, 0.49504950495049505, 0.48514851485148514, 0.5198019801980198, 0.5297029702970297, 0.5742574257425742, 0.5742574257425742, 0.9207920792079208, 0.9306930693069307, 0.9455445544554455, 0.9455445544554455, 0.9405940594059405, 0.9207920792079208, 0.905940594059406, 0.4603960396039604, 0.4504950495049505, 0.4158415841584158, 0.3910891089108911, 0.3613861386138614, 0.3564356435643564, 0.33663366336633666, 0.3118811881188119, 0.26732673267326734, 0.21782178217821782, 0.14356435643564355, 0.09405940594059406, 0.9207920792079208, 0.054455445544554455, 0.04455445544554455, 0.039603960396039604, 0.039603960396039604, 0.039603960396039604, 0.04455445544554455, 0.07425742574257425, 0.039603960396039604, 0.8514851485148515, 0.0297029702970297, 0.0297029702970297, 0.0297029702970297, 0.0297029702970297, 0.054455445544554455, 0.0594059405940594, 0.034653465346534656, 0.0297029702970297, 0.034653465346534656, 0.0297029702970297, 0.0297029702970297, 0.0297029702970297, 0.9356435643564357, 0.9356435643564357, 0.9356435643564357, 0.9356435643564357, 0.04455445544554455, 0.900990099009901, 0.04950495049504951, 0.0594059405940594, 0.054455445544554455, 0.039603960396039604, 0.034653465346534656, 0.06435643564356436, 0.04950495049504951, 0.5, 0.31683168316831684, 0.297029702970297, 0.06930693069306931, 0.06435643564356436, 0.019801980198019802, 0.01485148514851485, 0.009900990099009901, 0.01485148514851485, 0.01485148514851485, 0.01485148514851485, 0.01485148514851485, 0.01485148514851485, 0.019801980198019802, 0.01485148514851485, 0.9108910891089109, 0.6287128712871287, 0.5445544554455446, 0.3316831683168317, 0.019801980198019802, 0.019801980198019802, 0.01485148514851485, 0.01485148514851485, 0.01485148514851485, 0.01485148514851485, 0.01485148514851485, 0.019801980198019802, 0.034653465346534656, 0.034653465346534656, 0.0297029702970297, 0.024752475247524754, 0.9405940594059405, 0.9405940594059405, 0.9455445544554455, 0.9405940594059405, 0.9405940594059405, 0.9356435643564357, 0.024752475247524754, 0.039603960396039604, 0.0594059405940594, 0.13861386138613863, 0.8910891089108911, 0.2079207920792079, 0.12376237623762376, 0.04455445544554455, 0.019801980198019802, 0.009900990099009901, 0.009900990099009901, 0.9455445544554455, 0.9455445544554455, 0.9405940594059405, 0.009900990099009901, 0.01485148514851485, 0.009900990099009901, 0.009900990099009901, 0.009900990099009901, 0.009900990099009901, 0.01485148514851485, 0.01485148514851485, 0.01485148514851485, 0.01485148514851485, 0.01485148514851485, 0.019801980198019802, 0.5891089108910891, 0.5594059405940595, 0.6386138613861386, 0.4900990099009901, 0.9356435643564357, 0.9108910891089109, 0.07920792079207921, 0.034653465346534656, 0.024752475247524754, 0.019801980198019802, 0.9405940594059405, 0.9257425742574258, 0.01485148514851485, 0.01485148514851485, 0.01485148514851485, 0.01485148514851485, 0.019801980198019802, 0.01485148514851485, 0.01485148514851485, 0.01485148514851485, 0.01485148514851485, 0.01485148514851485, 0.01485148514851485, 0.01485148514851485, 0.01485148514851485, 0.01485148514851485, 0.01485148514851485, 0.6336633663366337, 0.9356435643564357, 0.8415841584158416, 0.599009900990099, 0.024752475247524754, 0.0594059405940594, 0.034653465346534656, 0.054455445544554455, 0.0594059405940594, 0.9108910891089109, 0.8316831683168316, 0.07425742574257425, 0.08415841584158416, 0.10891089108910891, 0.1188118811881188, 0.12376237623762376, 0.13366336633663367, 0.13861386138613863, 0.13366336633663367, 0.1485148514851485, 0.17326732673267325, 0.21782178217821782, 0.39603960396039606, 0.3613861386138614, 0.40594059405940597, 0.5148514851485149, 0.6881188118811881, 0.801980198019802], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF3575.gap.json b/pfam_gap_rates/DUF3575.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..8f52757645e4b498d6ec742c6fdbf07dad4fb798
--- /dev/null
+++ b/pfam_gap_rates/DUF3575.gap.json
@@ -0,0 +1 @@
+{"family": "DUF3575", "n_seqs": 234, "length": 231, "gap_rates": [0.9401709401709402, 0.7435897435897436, 0.5811965811965812, 0.5384615384615384, 0.4700854700854701, 0.45726495726495725, 0.4444444444444444, 0.44871794871794873, 0.45726495726495725, 0.452991452991453, 0.44017094017094016, 0.4230769230769231, 0.44017094017094016, 0.5299145299145299, 0.46153846153846156, 0.33760683760683763, 0.29914529914529914, 0.8461538461538461, 0.8846153846153846, 0.9017094017094017, 0.9273504273504274, 0.9230769230769231, 0.8974358974358975, 0.8675213675213675, 0.8376068376068376, 0.17094017094017094, 0.13247863247863248, 0.13247863247863248, 0.1282051282051282, 0.12393162393162394, 0.12393162393162394, 0.11965811965811966, 0.11538461538461539, 0.11538461538461539, 0.11965811965811966, 0.11965811965811966, 0.11965811965811966, 0.11538461538461539, 0.8675213675213675, 0.10683760683760683, 0.09829059829059829, 0.09401709401709402, 0.08974358974358974, 0.08974358974358974, 0.08974358974358974, 0.0811965811965812, 0.0811965811965812, 0.0811965811965812, 0.0811965811965812, 0.08547008547008547, 0.0811965811965812, 0.08547008547008547, 0.08547008547008547, 0.08547008547008547, 0.08547008547008547, 0.0811965811965812, 0.0811965811965812, 0.06837606837606838, 0.05982905982905983, 0.9487179487179487, 0.05555555555555555, 0.05982905982905983, 0.05555555555555555, 0.05555555555555555, 0.05555555555555555, 0.05128205128205128, 0.05128205128205128, 0.05555555555555555, 0.9401709401709402, 0.11538461538461539, 0.7692307692307693, 0.08547008547008547, 0.8589743589743589, 0.8974358974358975, 0.9102564102564102, 0.9316239316239316, 0.9444444444444444, 0.9487179487179487, 0.9401709401709402, 0.9102564102564102, 0.905982905982906, 0.8760683760683761, 0.8589743589743589, 0.1111111111111111, 0.07692307692307693, 0.8760683760683761, 0.9444444444444444, 0.9102564102564102, 0.811965811965812, 0.04700854700854701, 0.04700854700854701, 0.04700854700854701, 0.04700854700854701, 0.04700854700854701, 0.04700854700854701, 0.04700854700854701, 0.042735042735042736, 0.03418803418803419, 0.029914529914529916, 0.029914529914529916, 0.029914529914529916, 0.029914529914529916, 0.029914529914529916, 0.029914529914529916, 0.7478632478632479, 0.8589743589743589, 0.9487179487179487, 0.8717948717948718, 0.8290598290598291, 0.6452991452991453, 0.03418803418803419, 0.029914529914529916, 0.029914529914529916, 0.04700854700854701, 0.038461538461538464, 0.02564102564102564, 0.02564102564102564, 0.02564102564102564, 0.02564102564102564, 0.03418803418803419, 0.02564102564102564, 0.02564102564102564, 0.02564102564102564, 0.02564102564102564, 0.02564102564102564, 0.02564102564102564, 0.02564102564102564, 0.02564102564102564, 0.029914529914529916, 0.03418803418803419, 0.03418803418803419, 0.41025641025641024, 0.3547008547008547, 0.5384615384615384, 0.6153846153846154, 0.6495726495726496, 0.8632478632478633, 0.9017094017094017, 0.9487179487179487, 0.8760683760683761, 0.8547008547008547, 0.6196581196581197, 0.5982905982905983, 0.48717948717948717, 0.33760683760683763, 0.3888888888888889, 0.3247863247863248, 0.04700854700854701, 0.038461538461538464, 0.04700854700854701, 0.038461538461538464, 0.03418803418803419, 0.038461538461538464, 0.04700854700854701, 0.042735042735042736, 0.8205128205128205, 0.9102564102564102, 0.9444444444444444, 0.9316239316239316, 0.8803418803418803, 0.8162393162393162, 0.03418803418803419, 0.038461538461538464, 0.03418803418803419, 0.038461538461538464, 0.03418803418803419, 0.03418803418803419, 0.038461538461538464, 0.038461538461538464, 0.03418803418803419, 0.03418803418803419, 0.03418803418803419, 0.038461538461538464, 0.038461538461538464, 0.038461538461538464, 0.038461538461538464, 0.038461538461538464, 0.038461538461538464, 0.05128205128205128, 0.05555555555555555, 0.05982905982905983, 0.05982905982905983, 0.06837606837606838, 0.07264957264957266, 0.0811965811965812, 0.09401709401709402, 0.10256410256410256, 0.12393162393162394, 0.12393162393162394, 0.1282051282051282, 0.1282051282051282, 0.13675213675213677, 0.15384615384615385, 0.15384615384615385, 0.16666666666666666, 0.19658119658119658, 0.20085470085470086, 0.21367521367521367, 0.9401709401709402, 0.23504273504273504, 0.24358974358974358, 0.2777777777777778, 0.2606837606837607, 0.811965811965812, 0.27350427350427353, 0.2777777777777778, 0.2777777777777778, 0.2777777777777778, 0.2777777777777778, 0.28205128205128205, 0.2863247863247863, 0.2948717948717949, 0.2905982905982906, 0.9017094017094017, 0.2905982905982906, 0.2905982905982906, 0.2905982905982906, 0.2905982905982906, 0.2905982905982906, 0.2905982905982906, 0.2905982905982906, 0.2948717948717949, 0.2948717948717949, 0.2948717948717949, 0.29914529914529914, 0.3076923076923077, 0.31196581196581197, 0.3162393162393162, 0.3418803418803419, 0.3717948717948718, 0.43162393162393164], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF3579.gap.json b/pfam_gap_rates/DUF3579.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f8629c423b39c0e339b5eef9ab1567ffa0cffeff
--- /dev/null
+++ b/pfam_gap_rates/DUF3579.gap.json
@@ -0,0 +1 @@
+{"family": "DUF3579", "n_seqs": 113, "length": 93, "gap_rates": [0.5221238938053098, 0.1415929203539823, 0.07964601769911504, 0.04424778761061947, 0.02654867256637168, 0.02654867256637168, 0.02654867256637168, 0.02654867256637168, 0.02654867256637168, 0.04424778761061947, 0.035398230088495575, 0.02654867256637168, 0.02654867256637168, 0.02654867256637168, 0.02654867256637168, 0.02654867256637168, 0.02654867256637168, 0.02654867256637168, 0.02654867256637168, 0.02654867256637168, 0.02654867256637168, 0.02654867256637168, 0.02654867256637168, 0.02654867256637168, 0.02654867256637168, 0.02654867256637168, 0.02654867256637168, 0.02654867256637168, 0.017699115044247787, 0.017699115044247787, 0.017699115044247787, 0.017699115044247787, 0.017699115044247787, 0.36283185840707965, 0.37168141592920356, 0.40707964601769914, 0.5132743362831859, 0.8938053097345132, 0.7787610619469026, 0.4336283185840708, 0.18584070796460178, 0.07079646017699115, 0.035398230088495575, 0.017699115044247787, 0.017699115044247787, 0.017699115044247787, 0.017699115044247787, 0.017699115044247787, 0.017699115044247787, 0.017699115044247787, 0.017699115044247787, 0.017699115044247787, 0.017699115044247787, 0.9203539823008849, 0.017699115044247787, 0.008849557522123894, 0.008849557522123894, 0.008849557522123894, 0.008849557522123894, 0.008849557522123894, 0.008849557522123894, 0.008849557522123894, 0.008849557522123894, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.02654867256637168, 0.2743362831858407], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF3589.gap.json b/pfam_gap_rates/DUF3589.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..2008c2599b2b3fa3da11849f6ebc5885c393f915
--- /dev/null
+++ b/pfam_gap_rates/DUF3589.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF3658.gap.json b/pfam_gap_rates/DUF3658.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..8996b53884966d54b242deace8c11c30714ce276
--- /dev/null
+++ b/pfam_gap_rates/DUF3658.gap.json
@@ -0,0 +1 @@
+{"family": "DUF3658", "n_seqs": 114, "length": 118, "gap_rates": [0.8157894736842105, 0.6491228070175439, 0.4649122807017544, 0.3684210526315789, 0.34210526315789475, 0.2543859649122807, 0.20175438596491227, 0.20175438596491227, 0.19298245614035087, 0.15789473684210525, 0.13157894736842105, 0.12280701754385964, 0.12280701754385964, 0.12280701754385964, 0.12280701754385964, 0.11403508771929824, 0.11403508771929824, 0.11403508771929824, 0.11403508771929824, 0.11403508771929824, 0.11403508771929824, 0.11403508771929824, 0.11403508771929824, 0.11403508771929824, 0.11403508771929824, 0.11403508771929824, 0.11403508771929824, 0.11403508771929824, 0.11403508771929824, 0.11403508771929824, 0.11403508771929824, 0.10526315789473684, 0.10526315789473684, 0.10526315789473684, 0.10526315789473684, 0.11403508771929824, 0.08771929824561403, 0.08771929824561403, 0.09649122807017543, 0.08771929824561403, 0.07017543859649122, 0.06140350877192982, 0.06140350877192982, 0.05263157894736842, 0.05263157894736842, 0.05263157894736842, 0.05263157894736842, 0.05263157894736842, 0.043859649122807015, 0.043859649122807015, 0.043859649122807015, 0.043859649122807015, 0.043859649122807015, 0.05263157894736842, 0.05263157894736842, 0.043859649122807015, 0.5350877192982456, 0.6403508771929824, 0.6754385964912281, 0.7719298245614035, 0.9473684210526315, 0.7192982456140351, 0.6403508771929824, 0.6228070175438597, 0.5, 0.07017543859649122, 0.05263157894736842, 0.05263157894736842, 0.043859649122807015, 0.043859649122807015, 0.043859649122807015, 0.043859649122807015, 0.043859649122807015, 0.043859649122807015, 0.043859649122807015, 0.043859649122807015, 0.05263157894736842, 0.043859649122807015, 0.043859649122807015, 0.043859649122807015, 0.043859649122807015, 0.9385964912280702, 0.9473684210526315, 0.8596491228070176, 0.07894736842105263, 0.043859649122807015, 0.043859649122807015, 0.043859649122807015, 0.043859649122807015, 0.043859649122807015, 0.043859649122807015, 0.043859649122807015, 0.043859649122807015, 0.043859649122807015, 0.043859649122807015, 0.043859649122807015, 0.043859649122807015, 0.043859649122807015, 0.043859649122807015, 0.043859649122807015, 0.06140350877192982, 0.06140350877192982, 0.07017543859649122, 0.07017543859649122, 0.07017543859649122, 0.07894736842105263, 0.08771929824561403, 0.09649122807017543, 0.14035087719298245, 0.16666666666666666, 0.21052631578947367, 0.2543859649122807, 0.35964912280701755, 0.4298245614035088, 0.4473684210526316, 0.49122807017543857, 0.5350877192982456, 0.7719298245614035], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF3662.gap.json b/pfam_gap_rates/DUF3662.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..0576ba81f6684364d8996fbb267a683ab97dd584
--- /dev/null
+++ b/pfam_gap_rates/DUF3662.gap.json
@@ -0,0 +1 @@
+{"family": "DUF3662", "n_seqs": 296, "length": 116, "gap_rates": [0.23986486486486486, 0.11148648648648649, 0.08445945945945946, 0.0777027027027027, 0.07432432432432433, 0.07432432432432433, 0.07432432432432433, 0.07094594594594594, 0.06756756756756757, 0.060810810810810814, 0.060810810810810814, 0.05405405405405406, 0.06756756756756757, 0.057432432432432436, 0.057432432432432436, 0.05067567567567568, 0.05405405405405406, 0.04391891891891892, 0.04054054054054054, 0.05405405405405406, 0.08445945945945946, 0.0472972972972973, 0.04391891891891892, 0.033783783783783786, 0.033783783783783786, 0.030405405405405407, 0.030405405405405407, 0.030405405405405407, 0.02702702702702703, 0.02364864864864865, 0.016891891891891893, 0.016891891891891893, 0.016891891891891893, 0.016891891891891893, 0.016891891891891893, 0.016891891891891893, 0.016891891891891893, 0.013513513513513514, 0.013513513513513514, 0.013513513513513514, 0.23648648648648649, 0.016891891891891893, 0.02027027027027027, 0.02027027027027027, 0.006756756756756757, 0.006756756756756757, 0.006756756756756757, 0.0033783783783783786, 0.006756756756756757, 0.037162162162162164, 0.0033783783783783786, 0.0033783783783783786, 0.006756756756756757, 0.0033783783783783786, 0.0033783783783783786, 0.0033783783783783786, 0.0033783783783783786, 0.0033783783783783786, 0.0033783783783783786, 0.0033783783783783786, 0.0033783783783783786, 0.0033783783783783786, 0.0033783783783783786, 0.0033783783783783786, 0.0033783783783783786, 0.0033783783783783786, 0.0033783783783783786, 0.0033783783783783786, 0.0033783783783783786, 0.033783783783783786, 0.8716216216216216, 0.02702702702702703, 0.006756756756756757, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0033783783783783786, 0.0033783783783783786, 0.0033783783783783786, 0.0033783783783783786, 0.0033783783783783786, 0.0033783783783783786, 0.0033783783783783786, 0.0033783783783783786, 0.0033783783783783786, 0.0033783783783783786, 0.0033783783783783786, 0.0033783783783783786, 0.0033783783783783786, 0.0033783783783783786, 0.0033783783783783786, 0.0033783783783783786, 0.0033783783783783786, 0.0033783783783783786, 0.0033783783783783786, 0.006756756756756757, 0.006756756756756757, 0.006756756756756757, 0.006756756756756757, 0.006756756756756757, 0.016891891891891893, 0.016891891891891893, 0.016891891891891893, 0.02027027027027027, 0.02027027027027027, 0.02027027027027027, 0.02027027027027027, 0.033783783783783786, 0.037162162162162164, 0.04391891891891892, 0.0777027027027027, 0.6317567567567568], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF3696.gap.json b/pfam_gap_rates/DUF3696.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..73a01f843356376f7c13b8e83e5d3300b5239f40
--- /dev/null
+++ b/pfam_gap_rates/DUF3696.gap.json
@@ -0,0 +1 @@
+{"family": "DUF3696", "n_seqs": 115, "length": 55, "gap_rates": [0.4608695652173913, 0.30434782608695654, 0.20869565217391303, 0.10434782608695652, 0.08695652173913043, 0.05217391304347826, 0.034782608695652174, 0.034782608695652174, 0.02608695652173913, 0.02608695652173913, 0.017391304347826087, 0.017391304347826087, 0.017391304347826087, 0.05217391304347826, 0.0782608695652174, 0.40869565217391307, 0.12173913043478261, 0.12173913043478261, 0.0782608695652174, 0.05217391304347826, 0.017391304347826087, 0.017391304347826087, 0.017391304347826087, 0.02608695652173913, 0.4260869565217391, 0.5478260869565217, 0.5652173913043478, 0.5304347826086957, 0.6260869565217392, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.9217391304347826, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.017391304347826087, 0.043478260869565216, 0.08695652173913043, 0.11304347826086956, 0.11304347826086956, 0.12173913043478261, 0.1391304347826087, 0.16521739130434782, 0.21739130434782608, 0.3130434782608696, 0.4956521739130435], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF3708.gap.json b/pfam_gap_rates/DUF3708.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e5614ff07758ecdedf0a8fff02b4f06c046f6b43
--- /dev/null
+++ b/pfam_gap_rates/DUF3708.gap.json
@@ -0,0 +1 @@
+{"family": "DUF3708", "n_seqs": 214, "length": 197, "gap_rates": [0.5654205607476636, 0.1542056074766355, 0.08878504672897196, 0.07476635514018691, 0.04205607476635514, 0.037383177570093455, 0.014018691588785047, 0.014018691588785047, 0.014018691588785047, 0.014018691588785047, 0.014018691588785047, 0.014018691588785047, 0.014018691588785047, 0.014018691588785047, 0.014018691588785047, 0.014018691588785047, 0.018691588785046728, 0.009345794392523364, 0.009345794392523364, 0.014018691588785047, 0.014018691588785047, 0.009345794392523364, 0.009345794392523364, 0.056074766355140186, 0.03271028037383177, 0.028037383177570093, 0.018691588785046728, 0.02336448598130841, 0.08411214953271028, 0.8084112149532711, 0.7523364485981309, 0.004672897196261682, 0.004672897196261682, 0.004672897196261682, 0.004672897196261682, 0.004672897196261682, 0.004672897196261682, 0.004672897196261682, 0.004672897196261682, 0.004672897196261682, 0.004672897196261682, 0.004672897196261682, 0.004672897196261682, 0.004672897196261682, 0.004672897196261682, 0.004672897196261682, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.004672897196261682, 0.004672897196261682, 0.009345794392523364, 0.02336448598130841, 0.028037383177570093, 0.03271028037383177, 0.04205607476635514, 0.0514018691588785, 0.07009345794392523, 0.07009345794392523, 0.07476635514018691, 0.07476635514018691, 0.07476635514018691, 0.07476635514018691, 0.07476635514018691, 0.07476635514018691, 0.0794392523364486, 0.08411214953271028, 0.08411214953271028, 0.0794392523364486, 0.0794392523364486, 0.08411214953271028, 0.9345794392523364, 0.12149532710280374, 0.102803738317757, 0.102803738317757, 0.09345794392523364, 0.09345794392523364, 0.9299065420560748, 0.09345794392523364, 0.26635514018691586, 0.0794392523364486, 0.0794392523364486, 0.0794392523364486, 0.0794392523364486, 0.0794392523364486, 0.0794392523364486, 0.0794392523364486, 0.0794392523364486, 0.0794392523364486, 0.0794392523364486, 0.0794392523364486, 0.0794392523364486, 0.0794392523364486, 0.0794392523364486, 0.0794392523364486, 0.0794392523364486, 0.08411214953271028, 0.08411214953271028, 0.08411214953271028, 0.3691588785046729, 0.48598130841121495, 0.5373831775700935, 0.9158878504672897, 0.9392523364485982, 0.780373831775701, 0.4953271028037383, 0.4392523364485981, 0.3598130841121495, 0.19158878504672897, 0.17289719626168223, 0.14485981308411214, 0.13551401869158877, 0.14485981308411214, 0.1542056074766355, 0.1822429906542056, 0.17289719626168223, 0.16822429906542055, 0.205607476635514, 0.9158878504672897, 0.9345794392523364, 0.9439252336448598, 0.9392523364485982, 0.9205607476635514, 0.9158878504672897, 0.2757009345794392, 0.8411214953271028, 0.17289719626168223, 0.1308411214953271, 0.11682242990654206, 0.10747663551401869, 0.10747663551401869, 0.10747663551401869, 0.10747663551401869, 0.11682242990654206, 0.12149532710280374, 0.12149532710280374, 0.12149532710280374, 0.1261682242990654, 0.14485981308411214, 0.13551401869158877, 0.897196261682243, 0.9392523364485982, 0.9439252336448598, 0.9299065420560748, 0.8925233644859814, 0.12149532710280374, 0.11214953271028037, 0.11214953271028037, 0.10747663551401869, 0.1261682242990654, 0.18691588785046728, 0.14018691588785046, 0.11682242990654206, 0.1261682242990654, 0.1308411214953271, 0.14018691588785046, 0.09813084112149532, 0.6495327102803738, 0.8878504672897196, 0.9252336448598131, 0.9299065420560748, 0.897196261682243, 0.6915887850467289, 0.5280373831775701, 0.09813084112149532, 0.09813084112149532, 0.09813084112149532, 0.09813084112149532, 0.09813084112149532, 0.09813084112149532, 0.09813084112149532, 0.09813084112149532, 0.09813084112149532, 0.102803738317757, 0.102803738317757, 0.102803738317757, 0.102803738317757, 0.102803738317757, 0.102803738317757, 0.102803738317757, 0.102803738317757, 0.102803738317757, 0.102803738317757, 0.102803738317757, 0.102803738317757, 0.102803738317757, 0.102803738317757, 0.102803738317757, 0.102803738317757, 0.102803738317757, 0.11682242990654206, 0.14485981308411214], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF3712.gap.json b/pfam_gap_rates/DUF3712.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..659c5511c6d1a6468a47adf11208c6b895d7ecdb
--- /dev/null
+++ b/pfam_gap_rates/DUF3712.gap.json
@@ -0,0 +1 @@
+{"family": "DUF3712", "n_seqs": 415, "length": 143, "gap_rates": [0.8939759036144578, 0.5855421686746988, 0.42891566265060244, 0.39036144578313253, 0.38795180722891565, 0.37349397590361444, 0.36626506024096384, 0.363855421686747, 0.3614457831325301, 0.35903614457831323, 0.3493975903614458, 0.3493975903614458, 0.3469879518072289, 0.6939759036144578, 0.4819277108433735, 0.3566265060240964, 0.363855421686747, 0.38795180722891565, 0.25542168674698795, 0.23132530120481928, 0.20481927710843373, 0.19759036144578312, 0.7397590361445783, 0.18072289156626506, 0.1710843373493976, 0.16626506024096385, 0.1493975903614458, 0.13734939759036144, 0.13975903614457832, 0.14457831325301204, 0.1108433734939759, 0.09156626506024096, 0.043373493975903614, 0.03132530120481928, 0.9373493975903614, 0.9349397590361446, 0.021686746987951807, 0.012048192771084338, 0.007228915662650603, 0.007228915662650603, 0.007228915662650603, 0.007228915662650603, 0.007228915662650603, 0.007228915662650603, 0.007228915662650603, 0.007228915662650603, 0.007228915662650603, 0.007228915662650603, 0.007228915662650603, 0.0024096385542168677, 0.9060240963855422, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.619277108433735, 0.7903614457831325, 0.6313253012048192, 0.6120481927710844, 0.012048192771084338, 0.5783132530120482, 0.012048192771084338, 0.007228915662650603, 0.0024096385542168677, 0.0024096385542168677, 0.0024096385542168677, 0.0024096385542168677, 0.0024096385542168677, 0.8530120481927711, 0.0024096385542168677, 0.0024096385542168677, 0.0024096385542168677, 0.17349397590361446, 0.0024096385542168677, 0.0024096385542168677, 0.0024096385542168677, 0.0024096385542168677, 0.0024096385542168677, 0.0024096385542168677, 0.0024096385542168677, 0.0024096385542168677, 0.0024096385542168677, 0.0024096385542168677, 0.00963855421686747, 0.04096385542168675, 0.03614457831325301, 0.02650602409638554, 0.02891566265060241, 0.02650602409638554, 0.6289156626506024, 0.02650602409638554, 0.033734939759036145, 0.024096385542168676, 0.8481927710843373, 0.946987951807229, 0.7542168674698795, 0.01927710843373494, 0.016867469879518072, 0.01927710843373494, 0.016867469879518072, 0.016867469879518072, 0.03132530120481928, 0.02650602409638554, 0.07951807228915662, 0.043373493975903614, 0.043373493975903614, 0.327710843373494, 0.946987951807229, 0.8867469879518072, 0.12048192771084337, 0.043373493975903614, 0.02650602409638554, 0.02650602409638554, 0.02891566265060241, 0.02650602409638554, 0.024096385542168676, 0.021686746987951807, 0.021686746987951807, 0.024096385542168676, 0.021686746987951807, 0.01927710843373494, 0.01927710843373494, 0.01927710843373494, 0.021686746987951807, 0.02650602409638554, 0.02650602409638554, 0.02891566265060241, 0.02891566265060241, 0.03132530120481928, 0.9228915662650602, 0.03614457831325301, 0.04096385542168675, 0.05783132530120482, 0.07228915662650602, 0.0819277108433735, 0.10843373493975904, 0.13012048192771083, 0.3493975903614458, 0.6216867469879518], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF3759.gap.json b/pfam_gap_rates/DUF3759.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..741085d66ac3370c9b83124c6baa5f9f5ff415b4
--- /dev/null
+++ b/pfam_gap_rates/DUF3759.gap.json
@@ -0,0 +1 @@
+{"family": "DUF3759", "n_seqs": 148, "length": 95, "gap_rates": [0.5945945945945946, 0.2972972972972973, 0.22972972972972974, 0.20270270270270271, 0.16891891891891891, 0.11486486486486487, 0.0945945945945946, 0.04054054054054054, 0.02702702702702703, 0.7905405405405406, 0.9391891891891891, 0.9054054054054054, 0.6824324324324325, 0.060810810810810814, 0.02027027027027027, 0.02027027027027027, 0.02027027027027027, 0.013513513513513514, 0.013513513513513514, 0.013513513513513514, 0.013513513513513514, 0.013513513513513514, 0.013513513513513514, 0.013513513513513514, 0.013513513513513514, 0.013513513513513514, 0.013513513513513514, 0.013513513513513514, 0.013513513513513514, 0.013513513513513514, 0.013513513513513514, 0.013513513513513514, 0.013513513513513514, 0.02027027027027027, 0.02027027027027027, 0.02027027027027027, 0.02027027027027027, 0.02027027027027027, 0.02027027027027027, 0.02027027027027027, 0.02027027027027027, 0.02027027027027027, 0.013513513513513514, 0.02027027027027027, 0.013513513513513514, 0.02027027027027027, 0.006756756756756757, 0.013513513513513514, 0.013513513513513514, 0.013513513513513514, 0.006756756756756757, 0.006756756756756757, 0.006756756756756757, 0.006756756756756757, 0.006756756756756757, 0.006756756756756757, 0.006756756756756757, 0.006756756756756757, 0.006756756756756757, 0.006756756756756757, 0.013513513513513514, 0.013513513513513514, 0.013513513513513514, 0.013513513513513514, 0.013513513513513514, 0.013513513513513514, 0.02027027027027027, 0.02702702702702703, 0.02702702702702703, 0.02702702702702703, 0.02702702702702703, 0.02702702702702703, 0.02702702702702703, 0.02702702702702703, 0.033783783783783786, 0.033783783783783786, 0.0472972972972973, 0.033783783783783786, 0.033783783783783786, 0.033783783783783786, 0.033783783783783786, 0.033783783783783786, 0.033783783783783786, 0.04054054054054054, 0.05405405405405406, 0.07432432432432433, 0.08783783783783784, 0.10810810810810811, 0.10810810810810811, 0.12162162162162163, 0.14189189189189189, 0.14864864864864866, 0.20945945945945946, 0.3783783783783784, 0.6351351351351351], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF3774.gap.json b/pfam_gap_rates/DUF3774.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ef09602759d23d87d3950a8d1a041a6d07efc8fa
--- /dev/null
+++ b/pfam_gap_rates/DUF3774.gap.json
@@ -0,0 +1 @@
+{"family": "DUF3774", "n_seqs": 294, "length": 104, "gap_rates": [0.30612244897959184, 0.17006802721088435, 0.1564625850340136, 0.13945578231292516, 0.12244897959183673, 0.10884353741496598, 0.10884353741496598, 0.09863945578231292, 0.09183673469387756, 0.09183673469387756, 0.09183673469387756, 0.0782312925170068, 0.07482993197278912, 0.07482993197278912, 0.5918367346938775, 0.14285714285714285, 0.09863945578231292, 0.17346938775510204, 0.11224489795918367, 0.1054421768707483, 0.08843537414965986, 0.08843537414965986, 0.09863945578231292, 0.9455782312925171, 0.08163265306122448, 0.06462585034013606, 0.061224489795918366, 0.05102040816326531, 0.9387755102040817, 0.04421768707482993, 0.04421768707482993, 0.047619047619047616, 0.04421768707482993, 0.04421768707482993, 0.04421768707482993, 0.05442176870748299, 0.05782312925170068, 0.7653061224489796, 0.8945578231292517, 0.9421768707482994, 0.9489795918367347, 0.9149659863945578, 0.8129251700680272, 0.7312925170068028, 0.09863945578231292, 0.1326530612244898, 0.8707482993197279, 0.12585034013605442, 0.12244897959183673, 0.1054421768707483, 0.10884353741496598, 0.11564625850340136, 0.10884353741496598, 0.2857142857142857, 0.1598639455782313, 0.43197278911564624, 0.7721088435374149, 0.8707482993197279, 0.9285714285714286, 0.9455782312925171, 0.9047619047619048, 0.8095238095238095, 0.7278911564625851, 0.3843537414965986, 0.23469387755102042, 0.21768707482993196, 0.22789115646258504, 0.41156462585034015, 0.40816326530612246, 0.1360544217687075, 0.4421768707482993, 0.5816326530612245, 0.7721088435374149, 0.8741496598639455, 0.9319727891156463, 0.9455782312925171, 0.9081632653061225, 0.8401360544217688, 0.6360544217687075, 0.4931972789115646, 0.4013605442176871, 0.07482993197278912, 0.08843537414965986, 0.08503401360544217, 0.08163265306122448, 0.08163265306122448, 0.08503401360544217, 0.08503401360544217, 0.08843537414965986, 0.08843537414965986, 0.08843537414965986, 0.09183673469387756, 0.09183673469387756, 0.09183673469387756, 0.09183673469387756, 0.10204081632653061, 0.10204081632653061, 0.11564625850340136, 0.11904761904761904, 0.12244897959183673, 0.1326530612244898, 0.1326530612244898, 0.13945578231292516, 0.1870748299319728], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF3784.gap.json b/pfam_gap_rates/DUF3784.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ab02ff9f058c453cd44e18bdc2dad6c6ca830ebf
--- /dev/null
+++ b/pfam_gap_rates/DUF3784.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF3800.gap.json b/pfam_gap_rates/DUF3800.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b172ca885adb5c33940556ce556f31d637734706
--- /dev/null
+++ b/pfam_gap_rates/DUF3800.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF3810.gap.json b/pfam_gap_rates/DUF3810.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c736635dda9b79e46cf8fe926620f1e5802eb252
--- /dev/null
+++ b/pfam_gap_rates/DUF3810.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF3819.gap.json b/pfam_gap_rates/DUF3819.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a6bc6c3bd36f87275ed6278e247fd00af18d73a3
--- /dev/null
+++ b/pfam_gap_rates/DUF3819.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF383.gap.json b/pfam_gap_rates/DUF383.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b28382e41ed9bdd485707025d63a482b49a27c43
--- /dev/null
+++ b/pfam_gap_rates/DUF383.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF3839.gap.json b/pfam_gap_rates/DUF3839.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..4804de15a03e2e28f1ce1f8c7f2f00d4efc2613d
--- /dev/null
+++ b/pfam_gap_rates/DUF3839.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF3857.gap.json b/pfam_gap_rates/DUF3857.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f523e85426e81e5bcd8aa8ddc73a43be2f455eff
--- /dev/null
+++ b/pfam_gap_rates/DUF3857.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF3870.gap.json b/pfam_gap_rates/DUF3870.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..cfafb97b26feca02664690fadae5cd4cd16c2009
--- /dev/null
+++ b/pfam_gap_rates/DUF3870.gap.json
@@ -0,0 +1 @@
+{"family": "DUF3870", "n_seqs": 107, "length": 94, "gap_rates": [0.205607476635514, 0.12149532710280374, 0.037383177570093455, 0.018691588785046728, 0.018691588785046728, 0.018691588785046728, 0.018691588785046728, 0.018691588785046728, 0.018691588785046728, 0.018691588785046728, 0.018691588785046728, 0.018691588785046728, 0.018691588785046728, 0.037383177570093455, 0.037383177570093455, 0.037383177570093455, 0.018691588785046728, 0.018691588785046728, 0.018691588785046728, 0.009345794392523364, 0.009345794392523364, 0.009345794392523364, 0.009345794392523364, 0.009345794392523364, 0.009345794392523364, 0.009345794392523364, 0.009345794392523364, 0.009345794392523364, 0.018691588785046728, 0.009345794392523364, 0.009345794392523364, 0.009345794392523364, 0.009345794392523364, 0.009345794392523364, 0.009345794392523364, 0.009345794392523364, 0.009345794392523364, 0.009345794392523364, 0.009345794392523364, 0.009345794392523364, 0.009345794392523364, 0.009345794392523364, 0.009345794392523364, 0.009345794392523364, 0.009345794392523364, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.2803738317757009, 0.037383177570093455, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.009345794392523364, 0.018691588785046728, 0.04672897196261682, 0.5514018691588785], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF3987.gap.json b/pfam_gap_rates/DUF3987.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..01e7dfdd6968dd244dd5e09d39ef81fd037992e1
--- /dev/null
+++ b/pfam_gap_rates/DUF3987.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4042.gap.json b/pfam_gap_rates/DUF4042.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b614b979f7f1fc88f7a7f76152fa000fe6b290ad
--- /dev/null
+++ b/pfam_gap_rates/DUF4042.gap.json
@@ -0,0 +1 @@
+{"family": "DUF4042", "n_seqs": 131, "length": 199, "gap_rates": [0.35877862595419846, 0.22900763358778625, 0.22137404580152673, 0.20610687022900764, 0.20610687022900764, 0.20610687022900764, 0.1984732824427481, 0.1984732824427481, 0.1984732824427481, 0.1984732824427481, 0.19083969465648856, 0.183206106870229, 0.183206106870229, 0.183206106870229, 0.183206106870229, 0.183206106870229, 0.5954198473282443, 0.20610687022900764, 0.183206106870229, 0.183206106870229, 0.183206106870229, 0.183206106870229, 0.17557251908396945, 0.16030534351145037, 0.16030534351145037, 0.16030534351145037, 0.16030534351145037, 0.16030534351145037, 0.16030534351145037, 0.16030534351145037, 0.16030534351145037, 0.16030534351145037, 0.16030534351145037, 0.8396946564885496, 0.9083969465648855, 0.9389312977099237, 0.9465648854961832, 0.9389312977099237, 0.9236641221374046, 0.8702290076335878, 0.6183206106870229, 0.45038167938931295, 0.3969465648854962, 0.3282442748091603, 0.19083969465648856, 0.13740458015267176, 0.12213740458015267, 0.11450381679389313, 0.12213740458015267, 0.12213740458015267, 0.12213740458015267, 0.09923664122137404, 0.09923664122137404, 0.09923664122137404, 0.09923664122137404, 0.09923664122137404, 0.09923664122137404, 0.10687022900763359, 0.10687022900763359, 0.09923664122137404, 0.0916030534351145, 0.08396946564885496, 0.08396946564885496, 0.08396946564885496, 0.0916030534351145, 0.0916030534351145, 0.0916030534351145, 0.0916030534351145, 0.0916030534351145, 0.09923664122137404, 0.09923664122137404, 0.09923664122137404, 0.09923664122137404, 0.0916030534351145, 0.0916030534351145, 0.0916030534351145, 0.0916030534351145, 0.0916030534351145, 0.11450381679389313, 0.11450381679389313, 0.11450381679389313, 0.12213740458015267, 0.12213740458015267, 0.12213740458015267, 0.11450381679389313, 0.11450381679389313, 0.12213740458015267, 0.183206106870229, 0.1450381679389313, 0.1297709923664122, 0.7633587786259542, 0.9465648854961832, 0.6870229007633588, 0.21374045801526717, 0.15267175572519084, 0.09923664122137404, 0.1450381679389313, 0.08396946564885496, 0.08396946564885496, 0.08396946564885496, 0.08396946564885496, 0.08396946564885496, 0.08396946564885496, 0.0916030534351145, 0.0916030534351145, 0.0916030534351145, 0.09923664122137404, 0.09923664122137404, 0.0916030534351145, 0.08396946564885496, 0.08396946564885496, 0.08396946564885496, 0.08396946564885496, 0.08396946564885496, 0.08396946564885496, 0.08396946564885496, 0.0916030534351145, 0.0916030534351145, 0.0916030534351145, 0.0916030534351145, 0.09923664122137404, 0.09923664122137404, 0.11450381679389313, 0.11450381679389313, 0.1297709923664122, 0.12213740458015267, 0.11450381679389313, 0.12213740458015267, 0.12213740458015267, 0.13740458015267176, 0.1450381679389313, 0.15267175572519084, 0.15267175572519084, 0.15267175572519084, 0.15267175572519084, 0.15267175572519084, 0.15267175572519084, 0.15267175572519084, 0.16030534351145037, 0.16030534351145037, 0.16030534351145037, 0.16793893129770993, 0.16793893129770993, 0.17557251908396945, 0.17557251908396945, 0.183206106870229, 0.183206106870229, 0.183206106870229, 0.183206106870229, 0.183206106870229, 0.19083969465648856, 0.19083969465648856, 0.19083969465648856, 0.19083969465648856, 0.1984732824427481, 0.1984732824427481, 0.1984732824427481, 0.21374045801526717, 0.21374045801526717, 0.21374045801526717, 0.21374045801526717, 0.21374045801526717, 0.21374045801526717, 0.22137404580152673, 0.22137404580152673, 0.2366412213740458, 0.2366412213740458, 0.7786259541984732, 0.9083969465648855, 0.9465648854961832, 0.9465648854961832, 0.816793893129771, 0.7633587786259542, 0.2748091603053435, 0.31297709923664124, 0.32061068702290074, 0.29770992366412213, 0.3053435114503817, 0.32061068702290074, 0.32061068702290074, 0.32061068702290074, 0.32061068702290074, 0.3282442748091603, 0.3435114503816794, 0.3435114503816794, 0.3435114503816794, 0.3511450381679389, 0.3511450381679389, 0.35877862595419846, 0.366412213740458, 0.40458015267175573, 0.44274809160305345, 0.5114503816793893, 0.5419847328244275, 0.5725190839694656, 0.5954198473282443, 0.6259541984732825, 0.6793893129770993, 0.7786259541984732], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4062.gap.json b/pfam_gap_rates/DUF4062.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..5d5986e194a241b210a40fc18c9649cbbdb2ce71
--- /dev/null
+++ b/pfam_gap_rates/DUF4062.gap.json
@@ -0,0 +1 @@
+{"family": "DUF4062", "n_seqs": 374, "length": 147, "gap_rates": [0.22727272727272727, 0.08823529411764706, 0.0481283422459893, 0.0481283422459893, 0.0481283422459893, 0.045454545454545456, 0.045454545454545456, 0.08288770053475936, 0.0427807486631016, 0.0427807486631016, 0.034759358288770054, 0.03208556149732621, 0.03208556149732621, 0.026737967914438502, 0.026737967914438502, 0.026737967914438502, 0.026737967914438502, 0.026737967914438502, 0.026737967914438502, 0.026737967914438502, 0.026737967914438502, 0.02406417112299465, 0.02406417112299465, 0.5721925133689839, 0.4411764705882353, 0.4358288770053476, 0.4358288770053476, 0.4385026737967914, 0.053475935828877004, 0.4090909090909091, 0.4304812834224599, 0.4679144385026738, 0.5, 0.5374331550802139, 0.6336898395721925, 0.6978609625668449, 0.7593582887700535, 0.8262032085561497, 0.8262032085561497, 0.8235294117647058, 0.7005347593582888, 0.6550802139037433, 0.5909090909090909, 0.516042780748663, 0.4893048128342246, 0.43315508021390375, 0.4117647058823529, 0.40641711229946526, 0.0427807486631016, 0.2914438502673797, 0.28609625668449196, 0.28609625668449196, 0.08021390374331551, 0.5401069518716578, 0.606951871657754, 0.6390374331550802, 0.7914438502673797, 0.8903743315508021, 0.93048128342246, 0.9438502673796791, 0.9491978609625669, 0.9385026737967914, 0.9117647058823529, 0.8235294117647058, 0.6443850267379679, 0.6229946524064172, 0.5454545454545454, 0.516042780748663, 0.0374331550802139, 0.0374331550802139, 0.034759358288770054, 0.01871657754010695, 0.0213903743315508, 0.0213903743315508, 0.01871657754010695, 0.016042780748663103, 0.016042780748663103, 0.013368983957219251, 0.013368983957219251, 0.013368983957219251, 0.013368983957219251, 0.0106951871657754, 0.0106951871657754, 0.013368983957219251, 0.013368983957219251, 0.013368983957219251, 0.016042780748663103, 0.016042780748663103, 0.7219251336898396, 0.7352941176470589, 0.7433155080213903, 0.7406417112299465, 0.732620320855615, 0.6176470588235294, 0.01871657754010695, 0.01871657754010695, 0.01871657754010695, 0.01871657754010695, 0.01871657754010695, 0.01871657754010695, 0.01871657754010695, 0.01871657754010695, 0.0213903743315508, 0.0213903743315508, 0.0213903743315508, 0.0213903743315508, 0.0213903743315508, 0.6978609625668449, 0.713903743315508, 0.7299465240641712, 0.7379679144385026, 0.7540106951871658, 0.7620320855614974, 0.7647058823529411, 0.7914438502673797, 0.8716577540106952, 0.9144385026737968, 0.9331550802139037, 0.9411764705882353, 0.9358288770053476, 0.9197860962566845, 0.8850267379679144, 0.8609625668449198, 0.7887700534759359, 0.7620320855614974, 0.7620320855614974, 0.7433155080213903, 0.7379679144385026, 0.7192513368983957, 0.7005347593582888, 0.6711229946524064, 0.24331550802139038, 0.12299465240641712, 0.10962566844919786, 0.1443850267379679, 0.1657754010695187, 0.18983957219251338, 0.21122994652406418, 0.23529411764705882, 0.24064171122994651, 0.2647058823529412, 0.28342245989304815, 0.2994652406417112, 0.37967914438502676, 0.5026737967914439, 0.5641711229946524, 0.6096256684491979], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4105.gap.json b/pfam_gap_rates/DUF4105.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..20c94e41642ac34630a0559e325a55cc4080fde5
--- /dev/null
+++ b/pfam_gap_rates/DUF4105.gap.json
@@ -0,0 +1 @@
+{"family": "DUF4105", "n_seqs": 322, "length": 188, "gap_rates": [0.8975155279503105, 0.6677018633540373, 0.6024844720496895, 0.5434782608695652, 0.5217391304347826, 0.484472049689441, 0.4503105590062112, 0.40683229813664595, 0.36645962732919257, 0.35093167701863354, 0.30124223602484473, 0.2453416149068323, 0.1956521739130435, 0.16149068322981366, 0.11490683229813664, 0.09627329192546584, 0.08074534161490683, 0.06832298136645963, 0.6366459627329193, 0.35714285714285715, 0.034161490683229816, 0.031055900621118012, 0.031055900621118012, 0.031055900621118012, 0.027950310559006212, 0.027950310559006212, 0.024844720496894408, 0.021739130434782608, 0.021739130434782608, 0.2204968944099379, 0.2484472049689441, 0.2204968944099379, 0.018633540372670808, 0.018633540372670808, 0.018633540372670808, 0.018633540372670808, 0.018633540372670808, 0.018633540372670808, 0.018633540372670808, 0.018633540372670808, 0.018633540372670808, 0.018633540372670808, 0.018633540372670808, 0.018633540372670808, 0.018633540372670808, 0.27639751552795033, 0.2857142857142857, 0.2453416149068323, 0.6428571428571429, 0.7670807453416149, 0.8633540372670807, 0.9161490683229814, 0.9347826086956522, 0.9440993788819876, 0.9409937888198758, 0.9316770186335404, 0.9037267080745341, 0.7950310559006211, 0.7204968944099379, 0.6211180124223602, 0.021739130434782608, 0.015527950310559006, 0.015527950310559006, 0.015527950310559006, 0.015527950310559006, 0.015527950310559006, 0.015527950310559006, 0.07142857142857142, 0.031055900621118012, 0.024844720496894408, 0.021739130434782608, 0.027950310559006212, 0.037267080745341616, 0.5062111801242236, 0.4440993788819876, 0.43788819875776397, 0.034161490683229816, 0.015527950310559006, 0.009316770186335404, 0.009316770186335404, 0.006211180124223602, 0.006211180124223602, 0.009316770186335404, 0.009316770186335404, 0.009316770186335404, 0.009316770186335404, 0.009316770186335404, 0.009316770186335404, 0.009316770186335404, 0.012422360248447204, 0.012422360248447204, 0.009316770186335404, 0.009316770186335404, 0.012422360248447204, 0.009316770186335404, 0.006211180124223602, 0.006211180124223602, 0.009316770186335404, 0.009316770186335404, 0.009316770186335404, 0.009316770186335404, 0.006211180124223602, 0.006211180124223602, 0.39751552795031053, 0.006211180124223602, 0.006211180124223602, 0.006211180124223602, 0.006211180124223602, 0.006211180124223602, 0.006211180124223602, 0.006211180124223602, 0.006211180124223602, 0.006211180124223602, 0.006211180124223602, 0.006211180124223602, 0.006211180124223602, 0.003105590062111801, 0.006211180124223602, 0.003105590062111801, 0.003105590062111801, 0.003105590062111801, 0.003105590062111801, 0.003105590062111801, 0.003105590062111801, 0.003105590062111801, 0.003105590062111801, 0.36645962732919257, 0.7608695652173914, 0.36645962732919257, 0.36335403726708076, 0.003105590062111801, 0.003105590062111801, 0.003105590062111801, 0.006211180124223602, 0.009316770186335404, 0.012422360248447204, 0.015527950310559006, 0.015527950310559006, 0.9006211180124224, 0.015527950310559006, 0.015527950310559006, 0.015527950310559006, 0.015527950310559006, 0.015527950310559006, 0.015527950310559006, 0.015527950310559006, 0.015527950310559006, 0.015527950310559006, 0.015527950310559006, 0.015527950310559006, 0.015527950310559006, 0.015527950310559006, 0.015527950310559006, 0.015527950310559006, 0.015527950310559006, 0.015527950310559006, 0.015527950310559006, 0.015527950310559006, 0.018633540372670808, 0.031055900621118012, 0.040372670807453416, 0.07142857142857142, 0.08385093167701864, 0.09006211180124224, 0.11180124223602485, 0.22981366459627328, 0.16149068322981366, 0.19254658385093168, 0.19254658385093168, 0.2236024844720497, 0.6863354037267081, 0.6521739130434783, 0.6335403726708074, 0.6242236024844721, 0.9440993788819876, 0.6304347826086957, 0.6304347826086957, 0.6304347826086957, 0.6211180124223602, 0.6242236024844721, 0.65527950310559, 0.6645962732919255, 0.5869565217391305, 0.593167701863354, 0.6118012422360248, 0.6428571428571429, 0.6925465838509317, 0.8633540372670807], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4106.gap.json b/pfam_gap_rates/DUF4106.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c7fc33820cde3f439c097e7eb13e11162a0f023a
--- /dev/null
+++ b/pfam_gap_rates/DUF4106.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4113.gap.json b/pfam_gap_rates/DUF4113.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..2e668038c657128b9c9d528a8b63bd67412e6a8f
--- /dev/null
+++ b/pfam_gap_rates/DUF4113.gap.json
@@ -0,0 +1 @@
+{"family": "DUF4113", "n_seqs": 339, "length": 58, "gap_rates": [0.7846607669616519, 0.1976401179941003, 0.12094395280235988, 0.07964601769911504, 0.0471976401179941, 0.035398230088495575, 0.02359882005899705, 0.02359882005899705, 0.014749262536873156, 0.014749262536873156, 0.011799410029498525, 0.02064896755162242, 0.07079646017699115, 0.029498525073746312, 0.02064896755162242, 0.011799410029498525, 0.02359882005899705, 0.02654867256637168, 0.0058997050147492625, 0.0058997050147492625, 0.0029498525073746312, 0.0029498525073746312, 0.0029498525073746312, 0.0029498525073746312, 0.0029498525073746312, 0.8790560471976401, 0.9410029498525073, 0.9174041297935103, 0.8495575221238938, 0.035398230088495575, 0.9469026548672567, 0.029498525073746312, 0.02064896755162242, 0.0058997050147492625, 0.9351032448377581, 0.8790560471976401, 0.008849557522123894, 0.0058997050147492625, 0.008849557522123894, 0.0058997050147492625, 0.0058997050147492625, 0.0058997050147492625, 0.0058997050147492625, 0.0058997050147492625, 0.0058997050147492625, 0.0058997050147492625, 0.008849557522123894, 0.008849557522123894, 0.008849557522123894, 0.008849557522123894, 0.008849557522123894, 0.011799410029498525, 0.011799410029498525, 0.014749262536873156, 0.017699115044247787, 0.02654867256637168, 0.05604719764011799, 0.20353982300884957], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4115.gap.json b/pfam_gap_rates/DUF4115.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..dfa5f1b70b78b060318145f857b889286153c4a7
--- /dev/null
+++ b/pfam_gap_rates/DUF4115.gap.json
@@ -0,0 +1 @@
+{"family": "DUF4115", "n_seqs": 793, "length": 81, "gap_rates": [0.4791929382093317, 0.3266078184110971, 0.2068095838587642, 0.17906683480453972, 0.1424968474148802, 0.08196721311475409, 0.9255989911727617, 0.02395964691046658, 0.018915510718789406, 0.012610340479192938, 0.008827238335435058, 0.005044136191677175, 0.0037831021437578815, 0.0037831021437578815, 0.0037831021437578815, 0.39722572509457754, 0.0037831021437578815, 0.0025220680958385876, 0.0025220680958385876, 0.0, 0.0012610340479192938, 0.0, 0.0012610340479192938, 0.008827238335435058, 0.0012610340479192938, 0.005044136191677175, 0.0025220680958385876, 0.0, 0.0012610340479192938, 0.0, 0.0012610340479192938, 0.0012610340479192938, 0.0025220680958385876, 0.0, 0.0, 0.8575031525851198, 0.007566204287515763, 0.9066834804539723, 0.9218158890290038, 0.8953341740226987, 0.01008827238335435, 0.007566204287515763, 0.9218158890290038, 0.01008827238335435, 0.0, 0.03909205548549811, 0.0, 0.0, 0.0, 0.0, 0.0037831021437578815, 0.0037831021437578815, 0.01008827238335435, 0.005044136191677175, 0.0037831021437578815, 0.0037831021437578815, 0.0037831021437578815, 0.0037831021437578815, 0.0037831021437578815, 0.0037831021437578815, 0.005044136191677175, 0.005044136191677175, 0.005044136191677175, 0.005044136191677175, 0.006305170239596469, 0.011349306431273645, 0.02395964691046658, 0.034047919293820936, 0.04287515762925599, 0.4300126103404792, 0.9029003783102144, 0.13619167717528374, 0.13366960907944514, 0.14123581336696092, 0.16897856242118536, 0.19293820933165196, 0.23581336696090793, 0.2849936948297604, 0.37831021437578816, 0.49810844892812106, 0.7061790668348046], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4124.gap.json b/pfam_gap_rates/DUF4124.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..aab52719e869ed3dbbb2ff2a0f18e69f0a9bd72e
--- /dev/null
+++ b/pfam_gap_rates/DUF4124.gap.json
@@ -0,0 +1 @@
+{"family": "DUF4124", "n_seqs": 692, "length": 73, "gap_rates": [0.7658959537572254, 0.44942196531791906, 0.30346820809248554, 0.22832369942196531, 0.1907514450867052, 0.16907514450867053, 0.13728323699421965, 0.10404624277456648, 0.08815028901734104, 0.0708092485549133, 0.057803468208092484, 0.03468208092485549, 0.008670520231213872, 0.0, 0.0, 0.002890173410404624, 0.0, 0.002890173410404624, 0.028901734104046242, 0.001445086705202312, 0.001445086705202312, 0.0, 0.0, 0.0, 0.002890173410404624, 0.001445086705202312, 0.001445086705202312, 0.001445086705202312, 0.002890173410404624, 0.002890173410404624, 0.7312138728323699, 0.7716763005780347, 0.7976878612716763, 0.8135838150289018, 0.8265895953757225, 0.8424855491329479, 0.9176300578034682, 0.9407514450867052, 0.9450867052023122, 0.9248554913294798, 0.9060693641618497, 0.8395953757225434, 0.8208092485549133, 0.8034682080924855, 0.7875722543352601, 0.7427745664739884, 0.6820809248554913, 0.3078034682080925, 0.15028901734104047, 0.13005780346820808, 0.10838150289017341, 0.11705202312138728, 0.13005780346820808, 0.14884393063583815, 0.9465317919075145, 0.17485549132947978, 0.19797687861271676, 0.21820809248554912, 0.23410404624277456, 0.2630057803468208, 0.30346820809248554, 0.32947976878612717, 0.3540462427745665, 0.37572254335260113, 0.4031791907514451, 0.44508670520231214, 0.47398843930635837, 0.5404624277456648, 0.5895953757225434, 0.6358381502890174, 0.6921965317919075, 0.7615606936416185, 0.8641618497109826], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4135.gap.json b/pfam_gap_rates/DUF4135.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..5a60a13797b69c13c6a38e81d3dea5697d6cd3b3
--- /dev/null
+++ b/pfam_gap_rates/DUF4135.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4157.gap.json b/pfam_gap_rates/DUF4157.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a2ecfea73a803423f0d4513f3e79db5ac7508bd7
--- /dev/null
+++ b/pfam_gap_rates/DUF4157.gap.json
@@ -0,0 +1 @@
+{"family": "DUF4157", "n_seqs": 392, "length": 78, "gap_rates": [0.5816326530612245, 0.19642857142857142, 0.17346938775510204, 0.1377551020408163, 0.125, 0.11989795918367346, 0.10714285714285714, 0.08163265306122448, 0.06887755102040816, 0.058673469387755105, 0.05357142857142857, 0.05357142857142857, 0.05357142857142857, 0.05102040816326531, 0.04846938775510204, 0.04846938775510204, 0.04846938775510204, 0.05102040816326531, 0.03826530612244898, 0.03571428571428571, 0.03571428571428571, 0.03571428571428571, 0.03571428571428571, 0.03571428571428571, 0.03571428571428571, 0.03826530612244898, 0.3239795918367347, 0.32653061224489793, 0.31887755102040816, 0.09438775510204081, 0.030612244897959183, 0.02806122448979592, 0.02040816326530612, 0.017857142857142856, 0.015306122448979591, 0.015306122448979591, 0.007653061224489796, 0.007653061224489796, 0.007653061224489796, 0.00510204081632653, 0.00510204081632653, 0.007653061224489796, 0.007653061224489796, 0.00510204081632653, 0.00510204081632653, 0.00510204081632653, 0.00510204081632653, 0.00510204081632653, 0.00510204081632653, 0.11224489795918367, 0.09948979591836735, 0.10204081632653061, 0.09183673469387756, 0.3673469387755102, 0.336734693877551, 0.3163265306122449, 0.29081632653061223, 0.23979591836734693, 0.23469387755102042, 0.2066326530612245, 0.20918367346938777, 0.012755102040816327, 0.01020408163265306, 0.007653061224489796, 0.007653061224489796, 0.007653061224489796, 0.007653061224489796, 0.007653061224489796, 0.007653061224489796, 0.007653061224489796, 0.007653061224489796, 0.007653061224489796, 0.007653061224489796, 0.012755102040816327, 0.02040816326530612, 0.03571428571428571, 0.08418367346938775, 0.38010204081632654], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4158.gap.json b/pfam_gap_rates/DUF4158.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..df127e6d2d13772bc6bd9cb985205661c988d793
--- /dev/null
+++ b/pfam_gap_rates/DUF4158.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4172.gap.json b/pfam_gap_rates/DUF4172.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..dcafc048b2e5c1af2952d0a6ec7e2d6d62dd9a60
--- /dev/null
+++ b/pfam_gap_rates/DUF4172.gap.json
@@ -0,0 +1 @@
+{"family": "DUF4172", "n_seqs": 194, "length": 82, "gap_rates": [0.0979381443298969, 0.05670103092783505, 0.05670103092783505, 0.05670103092783505, 0.05670103092783505, 0.05670103092783505, 0.05670103092783505, 0.05154639175257732, 0.05154639175257732, 0.05154639175257732, 0.05154639175257732, 0.05154639175257732, 0.05154639175257732, 0.05154639175257732, 0.05154639175257732, 0.05154639175257732, 0.05154639175257732, 0.04639175257731959, 0.04639175257731959, 0.04639175257731959, 0.04639175257731959, 0.04639175257731959, 0.04639175257731959, 0.04639175257731959, 0.04639175257731959, 0.04639175257731959, 0.04639175257731959, 0.04639175257731959, 0.05154639175257732, 0.05154639175257732, 0.04639175257731959, 0.04639175257731959, 0.041237113402061855, 0.03608247422680412, 0.030927835051546393, 0.020618556701030927, 0.015463917525773196, 0.015463917525773196, 0.020618556701030927, 0.02577319587628866, 0.02577319587628866, 0.020618556701030927, 0.015463917525773196, 0.020618556701030927, 0.020618556701030927, 0.020618556701030927, 0.015463917525773196, 0.010309278350515464, 0.005154639175257732, 0.005154639175257732, 0.005154639175257732, 0.005154639175257732, 0.005154639175257732, 0.005154639175257732, 0.005154639175257732, 0.005154639175257732, 0.005154639175257732, 0.010309278350515464, 0.010309278350515464, 0.010309278350515464, 0.010309278350515464, 0.010309278350515464, 0.010309278350515464, 0.010309278350515464, 0.010309278350515464, 0.010309278350515464, 0.010309278350515464, 0.010309278350515464, 0.010309278350515464, 0.010309278350515464, 0.015463917525773196, 0.020618556701030927, 0.020618556701030927, 0.020618556701030927, 0.020618556701030927, 0.020618556701030927, 0.02577319587628866, 0.02577319587628866, 0.02577319587628866, 0.02577319587628866, 0.030927835051546393, 0.061855670103092786], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4177.gap.json b/pfam_gap_rates/DUF4177.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d82fdc229438cb0363eb1dffdfd2a31f9dd7a575
--- /dev/null
+++ b/pfam_gap_rates/DUF4177.gap.json
@@ -0,0 +1 @@
+{"family": "DUF4177", "n_seqs": 359, "length": 77, "gap_rates": [0.28133704735376047, 0.15877437325905291, 0.11977715877437325, 0.11977715877437325, 0.116991643454039, 0.0947075208913649, 0.0947075208913649, 0.3426183844011142, 0.3342618384401114, 0.3370473537604457, 0.3816155988857939, 0.3565459610027855, 0.11420612813370473, 0.10863509749303621, 0.8050139275766016, 0.883008356545961, 0.8969359331476323, 0.8607242339832869, 0.7743732590529248, 0.5069637883008357, 0.28133704735376047, 0.2116991643454039, 0.17270194986072424, 0.14484679665738162, 0.5125348189415042, 0.4596100278551532, 0.42618384401114207, 0.3816155988857939, 0.052924791086350974, 0.116991643454039, 0.6016713091922006, 0.5682451253481894, 0.9387186629526463, 0.49303621169916434, 0.002785515320334262, 0.002785515320334262, 0.002785515320334262, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.002785515320334262, 0.036211699164345405, 0.036211699164345405, 0.6713091922005571, 0.9331476323119777, 0.4373259052924791, 0.16991643454038996, 0.4763231197771588, 0.4818941504178273, 0.8885793871866295, 0.37047353760445684, 0.35097493036211697, 0.3649025069637883, 0.3370473537604457, 0.30919220055710306, 0.3064066852367688, 0.3064066852367688, 0.31197771587743733, 0.31197771587743733, 0.3231197771587744, 0.3231197771587744, 0.9164345403899722, 0.8885793871866295, 0.3342618384401114, 0.33147632311977715, 0.3426183844011142, 0.3342618384401114, 0.3593314763231198, 0.38997214484679665, 0.6629526462395543], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4179.gap.json b/pfam_gap_rates/DUF4179.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c363ace9b47eca7bf137a8597d252d4834e9510c
--- /dev/null
+++ b/pfam_gap_rates/DUF4179.gap.json
@@ -0,0 +1 @@
+{"family": "DUF4179", "n_seqs": 410, "length": 117, "gap_rates": [0.8951219512195122, 0.5926829268292683, 0.4219512195121951, 0.29024390243902437, 0.2146341463414634, 0.16341463414634147, 0.11951219512195121, 0.06829268292682927, 0.9219512195121952, 0.9365853658536586, 0.8951219512195122, 0.036585365853658534, 0.036585365853658534, 0.02926829268292683, 0.024390243902439025, 0.01951219512195122, 0.01707317073170732, 0.01707317073170732, 0.024390243902439025, 0.02926829268292683, 0.036585365853658534, 0.046341463414634146, 0.8804878048780488, 0.9219512195121952, 0.802439024390244, 0.3170731707317073, 0.2048780487804878, 0.1, 0.07317073170731707, 0.04878048780487805, 0.01951219512195122, 0.01951219512195122, 0.01707317073170732, 0.012195121951219513, 0.00975609756097561, 0.012195121951219513, 0.012195121951219513, 0.07317073170731707, 0.07317073170731707, 0.05853658536585366, 0.9195121951219513, 0.6121951219512195, 0.524390243902439, 0.5658536585365853, 0.13902439024390245, 0.12682926829268293, 0.11707317073170732, 0.05609756097560976, 0.05121951219512195, 0.046341463414634146, 0.036585365853658534, 0.041463414634146344, 0.036585365853658534, 0.041463414634146344, 0.06097560975609756, 0.06097560975609756, 0.1024390243902439, 0.0951219512195122, 0.18292682926829268, 0.2926829268292683, 0.6487804878048781, 0.8731707317073171, 0.9097560975609756, 0.9365853658536586, 0.926829268292683, 0.9, 0.8170731707317073, 0.4195121951219512, 0.23902439024390243, 0.13414634146341464, 0.0024390243902439024, 0.01951219512195122, 0.01951219512195122, 0.02195121951219512, 0.01707317073170732, 0.014634146341463415, 0.01707317073170732, 0.0024390243902439024, 0.9170731707317074, 0.9317073170731708, 0.9390243902439024, 0.9463414634146341, 0.9365853658536586, 0.926829268292683, 0.9097560975609756, 0.0024390243902439024, 0.00975609756097561, 0.00975609756097561, 0.0024390243902439024, 0.9317073170731708, 0.0024390243902439024, 0.0024390243902439024, 0.0024390243902439024, 0.0024390243902439024, 0.0024390243902439024, 0.0024390243902439024, 0.0024390243902439024, 0.0024390243902439024, 0.0024390243902439024, 0.0024390243902439024, 0.0024390243902439024, 0.004878048780487805, 0.004878048780487805, 0.004878048780487805, 0.004878048780487805, 0.004878048780487805, 0.004878048780487805, 0.00975609756097561, 0.014634146341463415, 0.024390243902439025, 0.02926829268292683, 0.03414634146341464, 0.07560975609756097, 0.11951219512195121, 0.15609756097560976, 0.32195121951219513, 0.8097560975609757], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4188.gap.json b/pfam_gap_rates/DUF4188.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..1dad6a5f8ebaa05743a0fbb61a028288ed4f00d0
--- /dev/null
+++ b/pfam_gap_rates/DUF4188.gap.json
@@ -0,0 +1 @@
+{"family": "DUF4188", "n_seqs": 175, "length": 133, "gap_rates": [0.2342857142857143, 0.14857142857142858, 0.11428571428571428, 0.10857142857142857, 0.10857142857142857, 0.10857142857142857, 0.10857142857142857, 0.10857142857142857, 0.10857142857142857, 0.10857142857142857, 0.10857142857142857, 0.10857142857142857, 0.10857142857142857, 0.10857142857142857, 0.10857142857142857, 0.10285714285714286, 0.6914285714285714, 0.6914285714285714, 0.09714285714285714, 0.09714285714285714, 0.17142857142857143, 0.1657142857142857, 0.15428571428571428, 0.14285714285714285, 0.07428571428571429, 0.07428571428571429, 0.06857142857142857, 0.06285714285714286, 0.06285714285714286, 0.06285714285714286, 0.05714285714285714, 0.05714285714285714, 0.05714285714285714, 0.05714285714285714, 0.05142857142857143, 0.05142857142857143, 0.05142857142857143, 0.09142857142857143, 0.045714285714285714, 0.9314285714285714, 0.6114285714285714, 0.04, 0.04, 0.03428571428571429, 0.03428571428571429, 0.03428571428571429, 0.03428571428571429, 0.03428571428571429, 0.03428571428571429, 0.03428571428571429, 0.03428571428571429, 0.03428571428571429, 0.84, 0.03428571428571429, 0.6342857142857142, 0.68, 0.9142857142857143, 0.7142857142857143, 0.6514285714285715, 0.5714285714285714, 0.22857142857142856, 0.05714285714285714, 0.05142857142857143, 0.04, 0.022857142857142857, 0.011428571428571429, 0.011428571428571429, 0.011428571428571429, 0.011428571428571429, 0.011428571428571429, 0.011428571428571429, 0.011428571428571429, 0.011428571428571429, 0.011428571428571429, 0.011428571428571429, 0.011428571428571429, 0.011428571428571429, 0.011428571428571429, 0.011428571428571429, 0.011428571428571429, 0.011428571428571429, 0.6571428571428571, 0.6171428571428571, 0.011428571428571429, 0.017142857142857144, 0.011428571428571429, 0.011428571428571429, 0.011428571428571429, 0.011428571428571429, 0.005714285714285714, 0.005714285714285714, 0.005714285714285714, 0.011428571428571429, 0.017142857142857144, 0.017142857142857144, 0.14857142857142858, 0.14857142857142858, 0.1657142857142857, 0.08, 0.05142857142857143, 0.9428571428571428, 0.76, 0.05142857142857143, 0.05714285714285714, 0.06285714285714286, 0.05714285714285714, 0.05714285714285714, 0.05714285714285714, 0.05714285714285714, 0.05714285714285714, 0.06285714285714286, 0.06285714285714286, 0.06285714285714286, 0.06285714285714286, 0.06285714285714286, 0.2, 0.12571428571428572, 0.06857142857142857, 0.07428571428571429, 0.07428571428571429, 0.07428571428571429, 0.08, 0.08, 0.08, 0.08, 0.08571428571428572, 0.08571428571428572, 0.08571428571428572, 0.9428571428571428, 0.08571428571428572, 0.09714285714285714, 0.10857142857142857, 0.17142857142857143], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4194.gap.json b/pfam_gap_rates/DUF4194.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..42776830d3b46eeae8f998d79f401fdf362aaf99
--- /dev/null
+++ b/pfam_gap_rates/DUF4194.gap.json
@@ -0,0 +1 @@
+{"family": "DUF4194", "n_seqs": 252, "length": 191, "gap_rates": [0.6150793650793651, 0.30952380952380953, 0.12698412698412698, 0.1111111111111111, 0.10317460317460317, 0.09523809523809523, 0.10317460317460317, 0.30158730158730157, 0.07936507936507936, 0.07539682539682539, 0.07142857142857142, 0.047619047619047616, 0.05952380952380952, 0.047619047619047616, 0.7063492063492064, 0.876984126984127, 0.6468253968253969, 0.07142857142857142, 0.05555555555555555, 0.9126984126984127, 0.9126984126984127, 0.9126984126984127, 0.9285714285714286, 0.9126984126984127, 0.9126984126984127, 0.9126984126984127, 0.9126984126984127, 0.003968253968253968, 0.003968253968253968, 0.003968253968253968, 0.003968253968253968, 0.003968253968253968, 0.003968253968253968, 0.003968253968253968, 0.003968253968253968, 0.003968253968253968, 0.003968253968253968, 0.003968253968253968, 0.003968253968253968, 0.003968253968253968, 0.003968253968253968, 0.003968253968253968, 0.003968253968253968, 0.003968253968253968, 0.003968253968253968, 0.003968253968253968, 0.003968253968253968, 0.003968253968253968, 0.003968253968253968, 0.003968253968253968, 0.003968253968253968, 0.003968253968253968, 0.003968253968253968, 0.003968253968253968, 0.003968253968253968, 0.007936507936507936, 0.003968253968253968, 0.003968253968253968, 0.003968253968253968, 0.003968253968253968, 0.003968253968253968, 0.003968253968253968, 0.003968253968253968, 0.003968253968253968, 0.003968253968253968, 0.003968253968253968, 0.20238095238095238, 0.20634920634920634, 0.24603174603174602, 0.2976190476190476, 0.5793650793650794, 0.7777777777777778, 0.8690476190476191, 0.9126984126984127, 0.9166666666666666, 0.9007936507936508, 0.7896825396825397, 0.6666666666666666, 0.36904761904761907, 0.3531746031746032, 0.35714285714285715, 0.2222222222222222, 0.1626984126984127, 0.12698412698412698, 0.10714285714285714, 0.09126984126984126, 0.35714285714285715, 0.0, 0.0, 0.003968253968253968, 0.003968253968253968, 0.003968253968253968, 0.003968253968253968, 0.003968253968253968, 0.003968253968253968, 0.003968253968253968, 0.003968253968253968, 0.003968253968253968, 0.003968253968253968, 0.003968253968253968, 0.003968253968253968, 0.003968253968253968, 0.003968253968253968, 0.003968253968253968, 0.003968253968253968, 0.003968253968253968, 0.003968253968253968, 0.003968253968253968, 0.011904761904761904, 0.04365079365079365, 0.10714285714285714, 0.8888888888888888, 0.8055555555555556, 0.5555555555555556, 0.3055555555555556, 0.1865079365079365, 0.011904761904761904, 0.011904761904761904, 0.011904761904761904, 0.011904761904761904, 0.011904761904761904, 0.011904761904761904, 0.011904761904761904, 0.011904761904761904, 0.011904761904761904, 0.011904761904761904, 0.011904761904761904, 0.011904761904761904, 0.011904761904761904, 0.011904761904761904, 0.011904761904761904, 0.7777777777777778, 0.16666666666666666, 0.17857142857142858, 0.07936507936507936, 0.027777777777777776, 0.027777777777777776, 0.03571428571428571, 0.11507936507936507, 0.23809523809523808, 0.07936507936507936, 0.05952380952380952, 0.1865079365079365, 0.03968253968253968, 0.01984126984126984, 0.01984126984126984, 0.011904761904761904, 0.011904761904761904, 0.011904761904761904, 0.011904761904761904, 0.011904761904761904, 0.011904761904761904, 0.011904761904761904, 0.011904761904761904, 0.011904761904761904, 0.011904761904761904, 0.011904761904761904, 0.011904761904761904, 0.011904761904761904, 0.011904761904761904, 0.011904761904761904, 0.023809523809523808, 0.011904761904761904, 0.01984126984126984, 0.10714285714285714, 0.25793650793650796, 0.5476190476190477, 0.06349206349206349, 0.031746031746031744, 0.04365079365079365, 0.7658730158730159, 0.9246031746031746, 0.5992063492063492, 0.503968253968254, 0.48412698412698413, 0.027777777777777776, 0.03571428571428571, 0.03571428571428571, 0.03571428571428571, 0.03571428571428571, 0.03571428571428571, 0.03571428571428571, 0.03571428571428571, 0.03571428571428571, 0.05952380952380952, 0.07539682539682539, 0.0992063492063492, 0.15476190476190477, 0.19444444444444445, 0.3253968253968254, 0.4801587301587302], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4201.gap.json b/pfam_gap_rates/DUF4201.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d84e566f24de770957c616755240bdcb50d92b33
--- /dev/null
+++ b/pfam_gap_rates/DUF4201.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4218.gap.json b/pfam_gap_rates/DUF4218.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d4d77faa402e5583a600e85f62ff285df2117c95
--- /dev/null
+++ b/pfam_gap_rates/DUF4218.gap.json
@@ -0,0 +1 @@
+{"family": "DUF4218", "n_seqs": 430, "length": 125, "gap_rates": [0.9069767441860465, 0.3953488372093023, 0.3813953488372093, 0.3674418604651163, 0.3581395348837209, 0.3581395348837209, 0.3558139534883721, 0.34418604651162793, 0.3372093023255814, 0.3186046511627907, 0.30697674418604654, 0.29069767441860467, 0.28604651162790695, 0.25813953488372093, 0.25813953488372093, 0.2534883720930233, 0.2534883720930233, 0.2558139534883721, 0.2558139534883721, 0.2558139534883721, 0.25116279069767444, 0.23953488372093024, 0.23953488372093024, 0.2302325581395349, 0.2302325581395349, 0.2186046511627907, 0.2186046511627907, 0.21627906976744185, 0.21627906976744185, 0.21627906976744185, 0.21627906976744185, 0.21627906976744185, 0.21627906976744185, 0.21627906976744185, 0.2116279069767442, 0.20465116279069767, 0.20465116279069767, 0.2, 0.19767441860465115, 0.19534883720930232, 0.19767441860465115, 0.19767441860465115, 0.20232558139534884, 0.2, 0.19767441860465115, 0.2, 0.19069767441860466, 0.16744186046511628, 0.16279069767441862, 0.16046511627906976, 0.16046511627906976, 0.1558139534883721, 0.1511627906976744, 0.1511627906976744, 0.14883720930232558, 0.14418604651162792, 0.12790697674418605, 0.12093023255813953, 0.11627906976744186, 0.11395348837209303, 0.10930232558139535, 0.11395348837209303, 0.11162790697674418, 0.11395348837209303, 0.11395348837209303, 0.11395348837209303, 0.11627906976744186, 0.1186046511627907, 0.1186046511627907, 0.10697674418604651, 0.10465116279069768, 0.10232558139534884, 0.09069767441860466, 0.09069767441860466, 0.08604651162790698, 0.08372093023255814, 0.07906976744186046, 0.08139534883720931, 0.08372093023255814, 0.08837209302325581, 0.08837209302325581, 0.09069767441860466, 0.08837209302325581, 0.09302325581395349, 0.08837209302325581, 0.09302325581395349, 0.09767441860465116, 0.09767441860465116, 0.1, 0.10697674418604651, 0.10930232558139535, 0.11627906976744186, 0.12093023255813953, 0.12325581395348838, 0.12558139534883722, 0.12790697674418605, 0.1325581395348837, 0.14186046511627906, 0.16511627906976745, 0.17906976744186046, 0.17906976744186046, 0.1813953488372093, 0.1930232558139535, 0.2, 0.2116279069767442, 0.21395348837209302, 0.21627906976744185, 0.22325581395348837, 0.2302325581395349, 0.23488372093023255, 0.23488372093023255, 0.2441860465116279, 0.23953488372093024, 0.2627906976744186, 0.2534883720930233, 0.2534883720930233, 0.2558139534883721, 0.2627906976744186, 0.2744186046511628, 0.28604651162790695, 0.29534883720930233, 0.3023255813953488, 0.30697674418604654, 0.3186046511627907, 0.5209302325581395], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4228.gap.json b/pfam_gap_rates/DUF4228.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ee20583a155ee0e46fc4988759154e6ee40e4e99
--- /dev/null
+++ b/pfam_gap_rates/DUF4228.gap.json
@@ -0,0 +1 @@
+{"family": "DUF4228", "n_seqs": 811, "length": 311, "gap_rates": [0.20715166461159062, 0.2059186189889026, 0.2059186189889026, 0.7546239210850801, 0.5351418002466092, 0.562268803945746, 0.5265104808877928, 0.8520345252774353, 0.8692971639950678, 0.8249075215782984, 0.4130702836004932, 0.32305795314426633, 0.4845869297163995, 0.46609124537607893, 0.2342786683107275, 0.21948212083847102, 0.2589395807644883, 0.16646115906288533, 0.7016029593094945, 0.8397040690505548, 0.8951911220715166, 0.9297163995067818, 0.9149198520345253, 0.8717632552404438, 0.7891491985203453, 0.6152897657213316, 0.24290998766954378, 0.07151664611590629, 0.06041923551171394, 0.0530209617755857, 0.17879161528976573, 0.04932182490752158, 0.04932182490752158, 0.04315659679408138, 0.040690505548705305, 0.03822441430332922, 0.036991368680641186, 0.036991368680641186, 0.036991368680641186, 0.036991368680641186, 0.035758323057953144, 0.0345252774352651, 0.03329223181257707, 0.03329223181257707, 0.9346485819975339, 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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4232.gap.json b/pfam_gap_rates/DUF4232.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..2e7f1a18062e415111d2c62731fc33872a739d86
--- /dev/null
+++ b/pfam_gap_rates/DUF4232.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4243.gap.json b/pfam_gap_rates/DUF4243.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..77e750a56d0f3fb7c2a86c8d04631c6bdc1ec76c
--- /dev/null
+++ b/pfam_gap_rates/DUF4243.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4245.gap.json b/pfam_gap_rates/DUF4245.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..173284f60f88df77e09767bb4b81ab39c249ec4c
--- /dev/null
+++ b/pfam_gap_rates/DUF4245.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4246.gap.json b/pfam_gap_rates/DUF4246.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..7385637553119eb063728410d8dbe080da97c7e8
--- /dev/null
+++ b/pfam_gap_rates/DUF4246.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4254.gap.json b/pfam_gap_rates/DUF4254.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..2443d5086b20cf9f7de7317403ab6eaad49eb95c
--- /dev/null
+++ b/pfam_gap_rates/DUF4254.gap.json
@@ -0,0 +1 @@
+{"family": "DUF4254", "n_seqs": 158, "length": 146, "gap_rates": [0.7784810126582279, 0.4240506329113924, 0.17088607594936708, 0.13291139240506328, 0.10126582278481013, 0.10126582278481013, 0.10126582278481013, 0.10126582278481013, 0.10126582278481013, 0.10126582278481013, 0.10126582278481013, 0.10126582278481013, 0.10126582278481013, 0.10126582278481013, 0.10126582278481013, 0.10126582278481013, 0.10126582278481013, 0.10126582278481013, 0.10126582278481013, 0.0949367088607595, 0.0949367088607595, 0.0949367088607595, 0.0949367088607595, 0.10126582278481013, 0.10759493670886076, 0.10126582278481013, 0.0949367088607595, 0.0949367088607595, 0.0949367088607595, 0.0949367088607595, 0.0949367088607595, 0.0949367088607595, 0.0949367088607595, 0.0949367088607595, 0.10126582278481013, 0.0949367088607595, 0.08860759493670886, 0.08227848101265822, 0.056962025316455694, 0.04430379746835443, 0.0379746835443038, 0.02531645569620253, 0.02531645569620253, 0.0189873417721519, 0.0189873417721519, 0.0189873417721519, 0.0189873417721519, 0.0189873417721519, 0.0189873417721519, 0.0189873417721519, 0.0189873417721519, 0.0189873417721519, 0.0189873417721519, 0.0189873417721519, 0.0189873417721519, 0.0189873417721519, 0.0189873417721519, 0.0189873417721519, 0.02531645569620253, 0.02531645569620253, 0.02531645569620253, 0.189873417721519, 0.18354430379746836, 0.0949367088607595, 0.9367088607594937, 0.9113924050632911, 0.03164556962025317, 0.03164556962025317, 0.03164556962025317, 0.03164556962025317, 0.03164556962025317, 0.03164556962025317, 0.03164556962025317, 0.03164556962025317, 0.0189873417721519, 0.0189873417721519, 0.0189873417721519, 0.0189873417721519, 0.0189873417721519, 0.0189873417721519, 0.0189873417721519, 0.0189873417721519, 0.0189873417721519, 0.0189873417721519, 0.0189873417721519, 0.0189873417721519, 0.0189873417721519, 0.03164556962025317, 0.03164556962025317, 0.03164556962025317, 0.0379746835443038, 0.0379746835443038, 0.0379746835443038, 0.0379746835443038, 0.0379746835443038, 0.05063291139240506, 0.06329113924050633, 0.0759493670886076, 0.06962025316455696, 0.0759493670886076, 0.06962025316455696, 0.0759493670886076, 0.0759493670886076, 0.12658227848101267, 0.12025316455696203, 0.12658227848101267, 0.12025316455696203, 0.11392405063291139, 0.12025316455696203, 0.11392405063291139, 0.0949367088607595, 0.0949367088607595, 0.0949367088607595, 0.0759493670886076, 0.06962025316455696, 0.06962025316455696, 0.06962025316455696, 0.06962025316455696, 0.06962025316455696, 0.056962025316455694, 0.05063291139240506, 0.05063291139240506, 0.05063291139240506, 0.05063291139240506, 0.05063291139240506, 0.05063291139240506, 0.05063291139240506, 0.05063291139240506, 0.05063291139240506, 0.05063291139240506, 0.05063291139240506, 0.05063291139240506, 0.05063291139240506, 0.05063291139240506, 0.05063291139240506, 0.05063291139240506, 0.05063291139240506, 0.05063291139240506, 0.05063291139240506, 0.05063291139240506, 0.056962025316455694, 0.06962025316455696, 0.06962025316455696, 0.0759493670886076, 0.1518987341772152, 0.31645569620253167], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4263.gap.json b/pfam_gap_rates/DUF4263.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..6c008c4e4ba4bbed99dea0f7b5ef940e0f3f2fe4
--- /dev/null
+++ b/pfam_gap_rates/DUF4263.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4342.gap.json b/pfam_gap_rates/DUF4342.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..af9e27b99b5cb275e6f8bfaf3fffbb2203118c5c
--- /dev/null
+++ b/pfam_gap_rates/DUF4342.gap.json
@@ -0,0 +1 @@
+{"family": "DUF4342", "n_seqs": 231, "length": 84, "gap_rates": [0.9393939393939394, 0.6277056277056277, 0.43722943722943725, 0.341991341991342, 0.2727272727272727, 0.23809523809523808, 0.21212121212121213, 0.18181818181818182, 0.1471861471861472, 0.1038961038961039, 0.09090909090909091, 0.06493506493506493, 0.047619047619047616, 0.021645021645021644, 0.012987012987012988, 0.012987012987012988, 0.008658008658008658, 0.008658008658008658, 0.008658008658008658, 0.004329004329004329, 0.004329004329004329, 0.004329004329004329, 0.004329004329004329, 0.004329004329004329, 0.004329004329004329, 0.004329004329004329, 0.004329004329004329, 0.004329004329004329, 0.004329004329004329, 0.004329004329004329, 0.004329004329004329, 0.004329004329004329, 0.004329004329004329, 0.004329004329004329, 0.004329004329004329, 0.5930735930735931, 0.004329004329004329, 0.004329004329004329, 0.004329004329004329, 0.004329004329004329, 0.004329004329004329, 0.004329004329004329, 0.004329004329004329, 0.004329004329004329, 0.004329004329004329, 0.004329004329004329, 0.004329004329004329, 0.004329004329004329, 0.004329004329004329, 0.004329004329004329, 0.004329004329004329, 0.004329004329004329, 0.9307359307359307, 0.9264069264069265, 0.5627705627705628, 0.5324675324675324, 0.5324675324675324, 0.5324675324675324, 0.09523809523809523, 0.004329004329004329, 0.004329004329004329, 0.0, 0.0, 0.004329004329004329, 0.004329004329004329, 0.004329004329004329, 0.008658008658008658, 0.012987012987012988, 0.017316017316017316, 0.017316017316017316, 0.03896103896103896, 0.05627705627705628, 0.06926406926406926, 0.06926406926406926, 0.06926406926406926, 0.0735930735930736, 0.0735930735930736, 0.0735930735930736, 0.0735930735930736, 0.07792207792207792, 0.09956709956709957, 0.11255411255411256, 0.21645021645021645, 0.31601731601731603], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4349.gap.json b/pfam_gap_rates/DUF4349.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e9061572d93de9a333aec8c2421d74a68252b69f
--- /dev/null
+++ b/pfam_gap_rates/DUF4349.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF436.gap.json b/pfam_gap_rates/DUF436.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f4cbdcbb9ce741d8b61d1050c4222dc7b24daf56
--- /dev/null
+++ b/pfam_gap_rates/DUF436.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4360.gap.json b/pfam_gap_rates/DUF4360.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..467f7f01843145372da9b637e15722a36a8d8e51
--- /dev/null
+++ b/pfam_gap_rates/DUF4360.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4366.gap.json b/pfam_gap_rates/DUF4366.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..23a4d569b69b22451e0b7b474f52f13ed218571b
--- /dev/null
+++ b/pfam_gap_rates/DUF4366.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4372.gap.json b/pfam_gap_rates/DUF4372.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..538cdb7100211f725d81792c1f99c37f983441a9
--- /dev/null
+++ b/pfam_gap_rates/DUF4372.gap.json
@@ -0,0 +1 @@
+{"family": "DUF4372", "n_seqs": 221, "length": 74, "gap_rates": [0.7647058823529411, 0.42081447963800905, 0.2081447963800905, 0.167420814479638, 0.10407239819004525, 0.07239819004524888, 0.07239819004524888, 0.07239819004524888, 0.06334841628959276, 0.049773755656108594, 0.049773755656108594, 0.04524886877828054, 0.04072398190045249, 0.04524886877828054, 0.03619909502262444, 0.03619909502262444, 0.03167420814479638, 0.03167420814479638, 0.03167420814479638, 0.03167420814479638, 0.027149321266968326, 0.027149321266968326, 0.02262443438914027, 0.02262443438914027, 0.02262443438914027, 0.013574660633484163, 0.013574660633484163, 0.058823529411764705, 0.058823529411764705, 0.013574660633484163, 0.013574660633484163, 0.02262443438914027, 0.01809954751131222, 0.01809954751131222, 0.02262443438914027, 0.02262443438914027, 0.02262443438914027, 0.027149321266968326, 0.027149321266968326, 0.027149321266968326, 0.03619909502262444, 0.03619909502262444, 0.027149321266968326, 0.02262443438914027, 0.02262443438914027, 0.02262443438914027, 0.02262443438914027, 0.02262443438914027, 0.02262443438914027, 0.027149321266968326, 0.027149321266968326, 0.027149321266968326, 0.03167420814479638, 0.03167420814479638, 0.03167420814479638, 0.03619909502262444, 0.03619909502262444, 0.03619909502262444, 0.03619909502262444, 0.049773755656108594, 0.058823529411764705, 0.11312217194570136, 0.10407239819004525, 0.11312217194570136, 0.13574660633484162, 0.1583710407239819, 0.23076923076923078, 0.22171945701357465, 0.23529411764705882, 0.25339366515837103, 0.2669683257918552, 0.2850678733031674, 0.29411764705882354, 0.746606334841629], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF438.gap.json b/pfam_gap_rates/DUF438.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..9595d7e4d506a2932f42e1338a14692cede27983
--- /dev/null
+++ b/pfam_gap_rates/DUF438.gap.json
@@ -0,0 +1 @@
+{"family": "DUF438", "n_seqs": 196, "length": 70, "gap_rates": [0.11224489795918367, 0.03571428571428571, 0.015306122448979591, 0.015306122448979591, 0.015306122448979591, 0.015306122448979591, 0.015306122448979591, 0.015306122448979591, 0.01020408163265306, 0.01020408163265306, 0.01020408163265306, 0.02040816326530612, 0.025510204081632654, 0.01020408163265306, 0.01020408163265306, 0.01020408163265306, 0.01020408163265306, 0.01020408163265306, 0.01020408163265306, 0.01020408163265306, 0.00510204081632653, 0.00510204081632653, 0.00510204081632653, 0.00510204081632653, 0.00510204081632653, 0.00510204081632653, 0.00510204081632653, 0.00510204081632653, 0.00510204081632653, 0.00510204081632653, 0.00510204081632653, 0.00510204081632653, 0.00510204081632653, 0.00510204081632653, 0.00510204081632653, 0.00510204081632653, 0.00510204081632653, 0.00510204081632653, 0.00510204081632653, 0.00510204081632653, 0.0, 0.9489795918367347, 0.8520408163265306, 0.00510204081632653, 0.0, 0.0, 0.9438775510204082, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.00510204081632653, 0.00510204081632653, 0.00510204081632653, 0.00510204081632653, 0.00510204081632653, 0.00510204081632653, 0.00510204081632653, 0.01020408163265306, 0.015306122448979591, 0.015306122448979591, 0.02040816326530612, 0.061224489795918366, 0.21428571428571427, 0.8826530612244898], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4405.gap.json b/pfam_gap_rates/DUF4405.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..5daff063c758b149e86d69f04166d12271816370
--- /dev/null
+++ b/pfam_gap_rates/DUF4405.gap.json
@@ -0,0 +1 @@
+{"family": "DUF4405", "n_seqs": 236, "length": 77, "gap_rates": [0.4322033898305085, 0.13983050847457626, 0.0847457627118644, 0.038135593220338986, 0.029661016949152543, 0.0211864406779661, 0.01694915254237288, 0.01694915254237288, 0.012711864406779662, 0.00847457627118644, 0.00847457627118644, 0.00847457627118644, 0.00847457627118644, 0.00423728813559322, 0.00423728813559322, 0.00423728813559322, 0.00423728813559322, 0.00423728813559322, 0.00423728813559322, 0.0, 0.0, 0.012711864406779662, 0.012711864406779662, 0.4364406779661017, 0.3432203389830508, 0.11016949152542373, 0.4703389830508475, 0.5127118644067796, 0.5127118644067796, 0.5127118644067796, 0.5211864406779662, 0.5466101694915254, 0.5466101694915254, 0.538135593220339, 0.6652542372881356, 0.8940677966101694, 0.923728813559322, 0.9491525423728814, 0.9279661016949152, 0.9152542372881356, 0.7076271186440678, 0.6271186440677966, 0.25, 0.3305084745762712, 0.3177966101694915, 0.2330508474576271, 0.7796610169491526, 0.9279661016949152, 0.635593220338983, 0.1652542372881356, 0.1228813559322034, 0.08898305084745763, 0.059322033898305086, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.00847457627118644, 0.01694915254237288, 0.029661016949152543, 0.046610169491525424, 0.07203389830508475, 0.2838983050847458], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4429.gap.json b/pfam_gap_rates/DUF4429.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..5ad0beaf3a8d6d17398a78383bd616b442b9db21
--- /dev/null
+++ b/pfam_gap_rates/DUF4429.gap.json
@@ -0,0 +1 @@
+{"family": "DUF4429", "n_seqs": 100, "length": 100, "gap_rates": [0.25, 0.11, 0.1, 0.1, 0.1, 0.09, 0.09, 0.09, 0.09, 0.09, 0.09, 0.09, 0.09, 0.08, 0.08, 0.35, 0.08, 0.08, 0.07, 0.05, 0.03, 0.06, 0.61, 0.02, 0.02, 0.02, 0.02, 0.02, 0.02, 0.02, 0.02, 0.02, 0.02, 0.02, 0.02, 0.02, 0.02, 0.02, 0.02, 0.02, 0.02, 0.01, 0.01, 0.01, 0.01, 0.02, 0.6, 0.22, 0.01, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.26, 0.19, 0.14, 0.13, 0.18, 0.26, 0.31, 0.45, 0.38, 0.33, 0.28, 0.2, 0.15, 0.09, 0.03, 0.02, 0.02, 0.03, 0.02, 0.02, 0.02, 0.02, 0.02, 0.79, 0.52, 0.51, 0.04, 0.05, 0.18, 0.05, 0.04, 0.04, 0.05, 0.06, 0.07, 0.08, 0.09, 0.29, 0.11, 0.11, 0.12, 0.13, 0.19, 0.65], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4457.gap.json b/pfam_gap_rates/DUF4457.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..594963350a782379b345d029be936aa2121925e0
--- /dev/null
+++ b/pfam_gap_rates/DUF4457.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF447.gap.json b/pfam_gap_rates/DUF447.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..0f8a27c144be326f5026a8db2c64100c7e75ec8f
--- /dev/null
+++ b/pfam_gap_rates/DUF447.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4471.gap.json b/pfam_gap_rates/DUF4471.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..83a681f96954c6af814232e7428576f33ca749ac
--- /dev/null
+++ b/pfam_gap_rates/DUF4471.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4479.gap.json b/pfam_gap_rates/DUF4479.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..58a07da6d213c73ef10ae8a90602f3af404469f7
--- /dev/null
+++ b/pfam_gap_rates/DUF4479.gap.json
@@ -0,0 +1 @@
+{"family": "DUF4479", "n_seqs": 152, "length": 74, "gap_rates": [0.875, 0.5263157894736842, 0.3026315789473684, 0.1513157894736842, 0.06578947368421052, 0.05263157894736842, 0.03289473684210526, 0.03289473684210526, 0.02631578947368421, 0.019736842105263157, 0.019736842105263157, 0.019736842105263157, 0.013157894736842105, 0.013157894736842105, 0.013157894736842105, 0.013157894736842105, 0.006578947368421052, 0.34210526315789475, 0.08552631578947369, 0.019736842105263157, 0.013157894736842105, 0.006578947368421052, 0.006578947368421052, 0.006578947368421052, 0.006578947368421052, 0.006578947368421052, 0.006578947368421052, 0.006578947368421052, 0.006578947368421052, 0.006578947368421052, 0.006578947368421052, 0.006578947368421052, 0.006578947368421052, 0.013157894736842105, 0.019736842105263157, 0.013157894736842105, 0.039473684210526314, 0.625, 0.006578947368421052, 0.006578947368421052, 0.0, 0.06578947368421052, 0.9276315789473685, 0.7960526315789473, 0.006578947368421052, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.013157894736842105, 0.013157894736842105, 0.013157894736842105, 0.013157894736842105, 0.013157894736842105, 0.019736842105263157, 0.03289473684210526, 0.039473684210526314, 0.046052631578947366, 0.06578947368421052, 0.08552631578947369, 0.11842105263157894, 0.11842105263157894, 0.15789473684210525, 0.2236842105263158, 0.27631578947368424], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF45.gap.json b/pfam_gap_rates/DUF45.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..386587050ffcd2be8ba9d6112d5835c22b8299d0
--- /dev/null
+++ b/pfam_gap_rates/DUF45.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4789.gap.json b/pfam_gap_rates/DUF4789.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..4c46482176a844e03c3ba0a825edf62dcfcb5d17
--- /dev/null
+++ b/pfam_gap_rates/DUF4789.gap.json
@@ -0,0 +1 @@
+{"family": "DUF4789", "n_seqs": 116, "length": 121, "gap_rates": [0.5775862068965517, 0.3879310344827586, 0.8448275862068966, 0.3793103448275862, 0.3620689655172414, 0.33620689655172414, 0.28448275862068967, 0.28448275862068967, 0.27586206896551724, 0.27586206896551724, 0.603448275862069, 0.7327586206896551, 0.4482758620689655, 0.3706896551724138, 0.22413793103448276, 0.20689655172413793, 0.1724137931034483, 0.11206896551724138, 0.07758620689655173, 0.06896551724137931, 0.06896551724137931, 0.05172413793103448, 0.034482758620689655, 0.034482758620689655, 0.8189655172413793, 0.9051724137931034, 0.9310344827586207, 0.9482758620689655, 0.9137931034482759, 0.9051724137931034, 0.8017241379310345, 0.6379310344827587, 0.5517241379310345, 0.08620689655172414, 0.034482758620689655, 0.04310344827586207, 0.04310344827586207, 0.02586206896551724, 0.19827586206896552, 0.04310344827586207, 0.02586206896551724, 0.02586206896551724, 0.02586206896551724, 0.02586206896551724, 0.034482758620689655, 0.034482758620689655, 0.034482758620689655, 0.02586206896551724, 0.017241379310344827, 0.017241379310344827, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.008620689655172414, 0.008620689655172414, 0.008620689655172414, 0.008620689655172414, 0.008620689655172414, 0.9482758620689655, 0.0603448275862069, 0.07758620689655173, 0.25, 0.2672413793103448, 0.2413793103448276, 0.12931034482758622, 0.21551724137931033, 0.35344827586206895, 0.3275862068965517, 0.10344827586206896, 0.11206896551724138, 0.15517241379310345, 0.15517241379310345, 0.16379310344827586, 0.7931034482758621, 0.7672413793103449, 0.16379310344827586, 0.16379310344827586, 0.43103448275862066, 0.3620689655172414, 0.3706896551724138, 0.41379310344827586, 0.3879310344827586, 0.3793103448275862, 0.28448275862068967, 0.28448275862068967, 0.4482758620689655, 0.5, 0.6724137931034483, 0.8017241379310345, 0.9310344827586207, 0.7586206896551724, 0.6293103448275862, 0.6379310344827587, 0.6206896551724138, 0.6637931034482759, 0.603448275862069, 0.8793103448275862, 0.9137931034482759, 0.9396551724137931, 0.9310344827586207, 0.9051724137931034, 0.853448275862069, 0.5862068965517241, 0.5775862068965517, 0.49137931034482757, 0.4482758620689655, 0.43103448275862066, 0.3017241379310345, 0.3448275862068966, 0.3448275862068966, 0.3448275862068966, 0.3448275862068966, 0.3620689655172414, 0.3793103448275862, 0.4051724137931034, 0.9310344827586207, 0.41379310344827586, 0.4224137931034483], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4843.gap.json b/pfam_gap_rates/DUF4843.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..4651caf17f89aa0446c7e8cd9ad7d5b3ca62402f
--- /dev/null
+++ b/pfam_gap_rates/DUF4843.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4864.gap.json b/pfam_gap_rates/DUF4864.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e33c3c11c91e95f562656fbba9a01244c8f272ab
--- /dev/null
+++ b/pfam_gap_rates/DUF4864.gap.json
@@ -0,0 +1 @@
+{"family": "DUF4864", "n_seqs": 115, "length": 104, "gap_rates": [0.5391304347826087, 0.2782608695652174, 0.11304347826086956, 0.05217391304347826, 0.043478260869565216, 0.02608695652173913, 0.02608695652173913, 0.02608695652173913, 0.02608695652173913, 0.02608695652173913, 0.02608695652173913, 0.017391304347826087, 0.017391304347826087, 0.017391304347826087, 0.008695652173913044, 0.008695652173913044, 0.0, 0.0, 0.0, 0.0, 0.9304347826086956, 0.008695652173913044, 0.008695652173913044, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.17391304347826086, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.9391304347826087, 0.10434782608695652, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.008695652173913044, 0.008695652173913044, 0.008695652173913044, 0.008695652173913044, 0.008695652173913044, 0.008695652173913044, 0.008695652173913044, 0.008695652173913044, 0.008695652173913044, 0.008695652173913044, 0.008695652173913044, 0.8521739130434782, 0.017391304347826087, 0.017391304347826087, 0.02608695652173913, 0.017391304347826087, 0.017391304347826087, 0.017391304347826087, 0.017391304347826087, 0.017391304347826087, 0.017391304347826087, 0.02608695652173913, 0.034782608695652174, 0.02608695652173913, 0.017391304347826087, 0.05217391304347826, 0.017391304347826087, 0.017391304347826087, 0.017391304347826087, 0.017391304347826087, 0.017391304347826087, 0.017391304347826087, 0.034782608695652174, 0.034782608695652174, 0.034782608695652174, 0.043478260869565216, 0.043478260869565216, 0.043478260869565216, 0.6, 0.09565217391304348, 0.10434782608695652, 0.12173913043478261, 0.12173913043478261, 0.13043478260869565, 0.1826086956521739, 0.5652173913043478], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF488.gap.json b/pfam_gap_rates/DUF488.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..cb059d5298cc6cb007222b18345dffbe3d81e4f9
--- /dev/null
+++ b/pfam_gap_rates/DUF488.gap.json
@@ -0,0 +1 @@
+{"family": "DUF488", "n_seqs": 955, "length": 132, "gap_rates": [0.7853403141361257, 0.32460732984293195, 0.218848167539267, 0.16649214659685863, 0.14659685863874344, 0.14136125654450263, 0.13298429319371727, 0.5832460732984294, 0.11413612565445026, 0.10366492146596859, 0.09633507853403141, 0.08900523560209424, 0.08376963350785341, 0.07853403141361257, 0.07853403141361257, 0.0806282722513089, 0.07643979057591622, 0.07539267015706806, 0.07015706806282722, 0.0774869109947644, 0.5465968586387434, 0.05549738219895288, 0.05340314136125655, 0.05340314136125655, 0.05340314136125655, 0.05340314136125655, 0.5685863874345549, 0.5685863874345549, 0.6785340314136126, 0.5654450261780105, 0.5633507853403141, 0.050261780104712044, 0.04712041884816754, 0.04607329842931937, 0.04607329842931937, 0.04607329842931937, 0.04607329842931937, 0.049214659685863874, 0.049214659685863874, 0.04502617801047121, 0.041884816753926704, 0.040837696335078534, 0.5696335078534032, 0.5664921465968586, 0.5664921465968586, 0.5591623036649215, 0.5329842931937173, 0.5151832460732985, 0.5151832460732985, 0.512041884816754, 0.02931937172774869, 0.02617801047120419, 0.027225130890052355, 0.02617801047120419, 0.8837696335078534, 0.02617801047120419, 0.024083769633507852, 0.02617801047120419, 0.031413612565445025, 0.0356020942408377, 0.039790575916230364, 0.04712041884816754, 0.04712041884816754, 0.049214659685863874, 0.050261780104712044, 0.04502617801047121, 0.04293193717277487, 0.16544502617801046, 0.15706806282722513, 0.187434554973822, 0.43455497382198954, 0.19267015706806281, 0.8806282722513089, 0.9130890052356021, 0.8513089005235602, 0.14973821989528796, 0.10575916230366492, 0.07015706806282722, 0.06596858638743455, 0.05654450261780105, 0.048167539267015703, 0.04293193717277487, 0.040837696335078534, 0.040837696335078534, 0.03664921465968586, 0.03455497382198953, 0.03455497382198953, 0.03455497382198953, 0.03455497382198953, 0.9151832460732985, 0.5319371727748691, 0.33612565445026177, 0.3204188481675393, 0.30471204188481676, 0.19895287958115182, 0.039790575916230364, 0.03664921465968586, 0.032460732984293195, 0.032460732984293195, 0.031413612565445025, 0.030366492146596858, 0.033507853403141365, 0.0356020942408377, 0.03769633507853403, 0.0356020942408377, 0.041884816753926704, 0.05235602094240838, 0.04293193717277487, 0.8146596858638744, 0.10575916230366492, 0.031413612565445025, 0.030366492146596858, 0.030366492146596858, 0.030366492146596858, 0.030366492146596858, 0.031413612565445025, 0.030366492146596858, 0.030366492146596858, 0.031413612565445025, 0.032460732984293195, 0.032460732984293195, 0.03664921465968586, 0.031413612565445025, 0.031413612565445025, 0.031413612565445025, 0.031413612565445025, 0.033507853403141365, 0.03455497382198953, 0.06387434554973823, 0.12879581151832462, 0.19162303664921465, 0.39895287958115183], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4974.gap.json b/pfam_gap_rates/DUF4974.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b4cec20e4d64a7e32cc38f5cf2260b1795244c43
--- /dev/null
+++ b/pfam_gap_rates/DUF4974.gap.json
@@ -0,0 +1 @@
+{"family": "DUF4974", "n_seqs": 1269, "length": 108, "gap_rates": [0.4160756501182033, 0.25059101654846333, 0.18124507486209615, 0.14184397163120568, 0.13396375098502758, 0.1284475965327029, 0.12135539795114263, 0.12450748620961387, 0.12056737588652482, 0.11899133175728921, 0.12608353033884948, 0.1954294720252167, 0.3617021276595745, 0.20567375886524822, 0.18597320724980299, 0.13317572892040977, 0.13711583924349882, 0.1024428684003152, 0.8691883372734437, 0.9196217494089834, 0.9448384554767534, 0.9369582348305753, 0.8999211977935382, 0.7123719464144996, 0.07249802994483845, 0.09613869188337273, 0.08589440504334121, 0.07486209613869188, 0.09219858156028368, 0.055161544523246654, 0.04334121355397951, 0.027580772261623327, 0.030732860520094562, 0.03546099290780142, 0.026004728132387706, 0.018124507486209612, 0.015760441292356184, 0.01103230890464933, 0.003940110323089046, 0.002364066193853428, 0.0007880220646178094, 0.0, 0.0, 0.0015760441292356187, 0.005516154452324665, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.002364066193853428, 0.0007880220646178094, 0.0007880220646178094, 0.0007880220646178094, 0.0015760441292356187, 0.005516154452324665, 0.8778565799842396, 0.029944838455476755, 0.36485421591804573, 0.004728132387706856, 0.0007880220646178094, 0.0007880220646178094, 0.0007880220646178094, 0.0007880220646178094, 0.0007880220646178094, 0.0007880220646178094, 0.0015760441292356187, 0.0015760441292356187, 0.4515366430260047, 0.01024428684003152, 0.006304176516942475, 0.006304176516942475, 0.0070921985815602835, 0.009456264775413711, 0.009456264775413711, 0.009456264775413711, 0.01182033096926714, 0.013396375098502758, 0.015760441292356184, 0.015760441292356184, 0.02048857368006304, 0.07249802994483845, 0.039401103230890466, 0.05831363278171789, 0.05752561071710008, 0.062253743104806934, 0.07092198581560284, 0.0937746256895193, 0.10559495665878645, 0.13790386130811663, 0.18360914105594955, 0.21355397951142632, 0.26556343577620173, 0.3309692671394799, 0.4515366430260047, 0.7462568951930654], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4976.gap.json b/pfam_gap_rates/DUF4976.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..9e3eeda824b30effd0cb4608f9bb695e3ed15975
--- /dev/null
+++ b/pfam_gap_rates/DUF4976.gap.json
@@ -0,0 +1 @@
+{"family": "DUF4976", "n_seqs": 917, "length": 105, "gap_rates": [0.7546346782988005, 0.4830970556161396, 0.366412213740458, 0.29880043620501634, 0.2595419847328244, 0.21701199563794984, 0.2050163576881134, 0.20065430752453653, 0.1984732824427481, 0.1984732824427481, 0.19738276990185388, 0.19629225736095965, 0.19738276990185388, 0.19738276990185388, 0.1984732824427481, 0.4351145038167939, 0.24863685932388221, 0.21046892039258452, 0.20719738276990185, 0.2093784078516903, 0.20719738276990185, 0.2050163576881134, 0.2050163576881134, 0.20065430752453653, 0.19956379498364232, 0.1984732824427481, 0.2093784078516903, 0.21701199563794984, 0.2148309705561614, 0.22246455834242093, 0.24536532170119957, 0.22900763358778625, 0.23336968375136313, 0.46455834242093785, 0.34242093784078514, 0.29880043620501634, 0.2606324972737186, 0.25190839694656486, 0.24863685932388221, 0.21810250817884405, 0.18974918211559433, 0.14830970556161396, 0.13849509269356597, 0.12431842966194111, 0.10141766630316248, 0.08942202835332606, 0.08178844056706652, 0.07633587786259542, 0.07197382769901854, 0.05779716466739367, 0.05670665212649945, 0.05125408942202835, 0.05452562704471101, 0.09596510359869138, 0.08833151581243184, 0.06870229007633588, 0.16357688113413305, 0.10468920392584515, 0.9498364231188658, 0.9476553980370774, 0.21374045801526717, 0.08724100327153762, 0.04471101417666303, 0.03271537622682661, 0.020719738276990186, 0.014176663031624863, 0.014176663031624863, 0.014176663031624863, 0.014176663031624863, 0.014176663031624863, 0.014176663031624863, 0.014176663031624863, 0.014176663031624863, 0.014176663031624863, 0.014176663031624863, 0.014176663031624863, 0.014176663031624863, 0.014176663031624863, 0.014176663031624863, 0.016357688113413305, 0.029443838604143947, 0.04798255179934569, 0.061068702290076333, 0.06543075245365322, 0.061068702290076333, 0.05125408942202835, 0.04907306434023991, 0.04798255179934569, 0.04580152671755725, 0.04580152671755725, 0.04689203925845147, 0.04798255179934569, 0.06870229007633588, 0.07960741548527808, 0.08942202835332606, 0.09596510359869138, 0.12213740458015267, 0.1613958560523446, 0.2529989094874591, 0.3326063249727372, 0.386041439476554, 0.4580152671755725, 0.5474372955288986, 0.6837513631406761, 0.822246455834242], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF5051.gap.json b/pfam_gap_rates/DUF5051.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..09cfe0822618bb3236cce86609038d7551b84a2c
--- /dev/null
+++ b/pfam_gap_rates/DUF5051.gap.json
@@ -0,0 +1 @@
+{"family": "DUF5051", "n_seqs": 186, "length": 211, "gap_rates": [0.6451612903225806, 0.34946236559139787, 0.08602150537634409, 0.03763440860215054, 0.026881720430107527, 0.021505376344086023, 0.021505376344086023, 0.021505376344086023, 0.021505376344086023, 0.021505376344086023, 0.23118279569892472, 0.053763440860215055, 0.05913978494623656, 0.7849462365591398, 0.021505376344086023, 0.010752688172043012, 0.010752688172043012, 0.010752688172043012, 0.010752688172043012, 0.005376344086021506, 0.005376344086021506, 0.005376344086021506, 0.005376344086021506, 0.005376344086021506, 0.005376344086021506, 0.5161290322580645, 0.510752688172043, 0.9193548387096774, 0.7043010752688172, 0.11290322580645161, 0.1774193548387097, 0.11290322580645161, 0.005376344086021506, 0.532258064516129, 0.6612903225806451, 0.9408602150537635, 0.6075268817204301, 0.053763440860215055, 0.005376344086021506, 0.005376344086021506, 0.005376344086021506, 0.005376344086021506, 0.005376344086021506, 0.005376344086021506, 0.005376344086021506, 0.005376344086021506, 0.25806451612903225, 0.005376344086021506, 0.005376344086021506, 0.9139784946236559, 0.08602150537634409, 0.5053763440860215, 0.44086021505376344, 0.4032258064516129, 0.8655913978494624, 0.8064516129032258, 0.7150537634408602, 0.6827956989247311, 0.5967741935483871, 0.553763440860215, 0.532258064516129, 0.45161290322580644, 0.3225806451612903, 0.26881720430107525, 0.1881720430107527, 0.15053763440860216, 0.11290322580645161, 0.12903225806451613, 0.14516129032258066, 0.13440860215053763, 0.10752688172043011, 0.06989247311827956, 0.07526881720430108, 0.06451612903225806, 0.10752688172043011, 0.08602150537634409, 0.0913978494623656, 0.9354838709677419, 0.946236559139785, 0.8440860215053764, 0.10215053763440861, 0.13440860215053763, 0.22043010752688172, 0.45161290322580644, 0.2903225806451613, 0.10215053763440861, 0.03225806451612903, 0.010752688172043012, 0.010752688172043012, 0.010752688172043012, 0.005376344086021506, 0.005376344086021506, 0.010752688172043012, 0.005376344086021506, 0.005376344086021506, 0.005376344086021506, 0.005376344086021506, 0.005376344086021506, 0.005376344086021506, 0.0, 0.23655913978494625, 0.6021505376344086, 0.7795698924731183, 0.8817204301075269, 0.9408602150537635, 0.9354838709677419, 0.8387096774193549, 0.7311827956989247, 0.34946236559139787, 0.21505376344086022, 0.20967741935483872, 0.07526881720430108, 0.043010752688172046, 0.021505376344086023, 0.010752688172043012, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.03763440860215054, 0.005376344086021506, 0.005376344086021506, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.21505376344086022, 0.20430107526881722, 0.005376344086021506, 0.3118279569892473, 0.6236559139784946, 0.6935483870967742, 0.8010752688172043, 0.9354838709677419, 0.946236559139785, 0.9354838709677419, 0.7741935483870968, 0.6666666666666666, 0.41935483870967744, 0.2903225806451613, 0.010752688172043012, 0.43010752688172044, 0.26344086021505375, 0.3602150537634409, 0.3064516129032258, 0.2849462365591398, 0.23118279569892472, 0.1827956989247312, 0.15053763440860216, 0.04838709677419355, 0.04838709677419355, 0.04838709677419355, 0.04838709677419355, 0.03763440860215054, 0.026881720430107527, 0.021505376344086023, 0.016129032258064516, 0.016129032258064516, 0.016129032258064516, 0.7204301075268817, 0.8655913978494624, 0.7473118279569892, 0.6666666666666666, 0.08602150537634409, 0.07526881720430108, 0.40860215053763443, 0.23655913978494625, 0.11290322580645161, 0.10752688172043011, 0.3602150537634409, 0.5376344086021505, 0.42473118279569894, 0.2956989247311828, 0.1881720430107527, 0.12365591397849462, 0.08602150537634409, 0.07526881720430108, 0.06989247311827956, 0.03225806451612903, 0.6612903225806451, 0.8817204301075269, 0.9301075268817204, 0.8817204301075269, 0.6666666666666666, 0.5053763440860215, 0.03225806451612903, 0.03225806451612903, 0.03225806451612903, 0.026881720430107527, 0.026881720430107527, 0.026881720430107527, 0.026881720430107527, 0.026881720430107527, 0.026881720430107527, 0.026881720430107527, 0.026881720430107527, 0.026881720430107527, 0.026881720430107527, 0.03225806451612903, 0.06989247311827956, 0.08602150537634409, 0.16129032258064516, 0.22580645161290322, 0.34946236559139787, 0.5, 0.9086021505376344], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF533.gap.json b/pfam_gap_rates/DUF533.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..774c57a6548ad4ae034e6d619a227301716864f5
--- /dev/null
+++ b/pfam_gap_rates/DUF533.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF568.gap.json b/pfam_gap_rates/DUF568.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..8c43ad1abdcb00b210d24df1e90c8507788d32ec
--- /dev/null
+++ b/pfam_gap_rates/DUF568.gap.json
@@ -0,0 +1 @@
+{"family": "DUF568", "n_seqs": 217, "length": 122, "gap_rates": [0.03225806451612903, 0.03225806451612903, 0.03225806451612903, 0.027649769585253458, 0.027649769585253458, 0.027649769585253458, 0.02304147465437788, 0.02304147465437788, 0.02304147465437788, 0.02304147465437788, 0.6728110599078341, 0.15668202764976957, 0.041474654377880185, 0.02304147465437788, 0.018433179723502304, 0.02304147465437788, 0.018433179723502304, 0.07834101382488479, 0.013824884792626729, 0.013824884792626729, 0.013824884792626729, 0.013824884792626729, 0.013824884792626729, 0.013824884792626729, 0.013824884792626729, 0.013824884792626729, 0.013824884792626729, 0.013824884792626729, 0.013824884792626729, 0.9400921658986175, 0.631336405529954, 0.08755760368663594, 0.7235023041474654, 0.815668202764977, 0.9078341013824884, 0.8571428571428571, 0.7465437788018433, 0.6589861751152074, 0.03686635944700461, 0.041474654377880185, 0.03225806451612903, 0.041474654377880185, 0.728110599078341, 0.02304147465437788, 0.018433179723502304, 0.018433179723502304, 0.02304147465437788, 0.02304147465437788, 0.018433179723502304, 0.8663594470046083, 0.041474654377880185, 0.03225806451612903, 0.018433179723502304, 0.018433179723502304, 0.03225806451612903, 0.03686635944700461, 0.04608294930875576, 0.027649769585253458, 0.815668202764977, 0.8986175115207373, 0.9078341013824884, 0.9078341013824884, 0.9078341013824884, 0.9032258064516129, 0.8847926267281107, 0.6589861751152074, 0.013824884792626729, 0.013824884792626729, 0.009216589861751152, 0.009216589861751152, 0.009216589861751152, 0.004608294930875576, 0.004608294930875576, 0.004608294930875576, 0.004608294930875576, 0.004608294930875576, 0.004608294930875576, 0.004608294930875576, 0.004608294930875576, 0.9262672811059908, 0.8894009216589862, 0.7649769585253456, 0.02304147465437788, 0.013824884792626729, 0.013824884792626729, 0.0, 0.0, 0.0, 0.0, 0.0, 0.004608294930875576, 0.004608294930875576, 0.004608294930875576, 0.004608294930875576, 0.004608294930875576, 0.004608294930875576, 0.3087557603686636, 0.004608294930875576, 0.009216589861751152, 0.8847926267281107, 0.009216589861751152, 0.009216589861751152, 0.05069124423963134, 0.013824884792626729, 0.013824884792626729, 0.009216589861751152, 0.009216589861751152, 0.013824884792626729, 0.03686635944700461, 0.013824884792626729, 0.018433179723502304, 0.02304147465437788, 0.02304147465437788, 0.03225806451612903, 0.03225806451612903, 0.03225806451612903, 0.03225806451612903, 0.03686635944700461, 0.03686635944700461, 0.041474654377880185, 0.055299539170506916, 0.23963133640552994], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF732.gap.json b/pfam_gap_rates/DUF732.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..0395293c808ded3adc1b42976b0c658d2131f6cf
--- /dev/null
+++ b/pfam_gap_rates/DUF732.gap.json
@@ -0,0 +1 @@
+{"family": "DUF732", "n_seqs": 166, "length": 130, "gap_rates": [0.9036144578313253, 0.6686746987951807, 0.5421686746987951, 0.5120481927710844, 0.4819277108433735, 0.45180722891566266, 0.4397590361445783, 0.42771084337349397, 0.41566265060240964, 0.40963855421686746, 0.3795180722891566, 0.3313253012048193, 0.3072289156626506, 0.29518072289156627, 0.27710843373493976, 0.24096385542168675, 0.23493975903614459, 0.24096385542168675, 0.24096385542168675, 0.7409638554216867, 0.8132530120481928, 0.8433734939759037, 0.8795180722891566, 0.9156626506024096, 0.927710843373494, 0.8975903614457831, 0.8614457831325302, 0.8192771084337349, 0.7891566265060241, 0.5963855421686747, 0.21084337349397592, 0.16265060240963855, 0.10240963855421686, 0.1144578313253012, 0.0963855421686747, 0.9096385542168675, 0.8012048192771084, 0.08433734939759036, 0.08433734939759036, 0.0783132530120482, 0.0783132530120482, 0.0783132530120482, 0.07228915662650602, 0.07228915662650602, 0.06626506024096386, 0.07228915662650602, 0.07228915662650602, 0.8795180722891566, 0.8072289156626506, 0.12650602409638553, 0.06626506024096386, 0.060240963855421686, 0.8975903614457831, 0.9457831325301205, 0.8373493975903614, 0.030120481927710843, 0.030120481927710843, 0.030120481927710843, 0.04819277108433735, 0.030120481927710843, 0.891566265060241, 0.024096385542168676, 0.024096385542168676, 0.024096385542168676, 0.024096385542168676, 0.024096385542168676, 0.024096385542168676, 0.018072289156626505, 0.012048192771084338, 0.012048192771084338, 0.012048192771084338, 0.012048192771084338, 0.8493975903614458, 0.012048192771084338, 0.0, 0.0, 0.0, 0.0, 0.0, 0.006024096385542169, 0.006024096385542169, 0.9397590361445783, 0.9156626506024096, 0.012048192771084338, 0.024096385542168676, 0.006024096385542169, 0.024096385542168676, 0.024096385542168676, 0.024096385542168676, 0.05421686746987952, 0.35542168674698793, 0.9156626506024096, 0.9397590361445783, 0.7590361445783133, 0.06626506024096386, 0.08433734939759036, 0.04819277108433735, 0.1566265060240964, 0.14457831325301204, 0.0783132530120482, 0.8674698795180723, 0.8734939759036144, 0.891566265060241, 0.927710843373494, 0.9337349397590361, 0.9457831325301205, 0.9337349397590361, 0.8975903614457831, 0.8734939759036144, 0.8734939759036144, 0.8614457831325302, 0.060240963855421686, 0.04819277108433735, 0.04216867469879518, 0.04216867469879518, 0.04216867469879518, 0.05421686746987952, 0.05421686746987952, 0.04819277108433735, 0.04819277108433735, 0.04819277108433735, 0.04819277108433735, 0.04819277108433735, 0.05421686746987952, 0.05421686746987952, 0.06626506024096386, 0.1686746987951807, 0.24096385542168675, 0.29518072289156627, 0.6566265060240963], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF736.gap.json b/pfam_gap_rates/DUF736.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..617a9190540d898b82b67ddf0338fba99f354dc4
--- /dev/null
+++ b/pfam_gap_rates/DUF736.gap.json
@@ -0,0 +1 @@
+{"family": "DUF736", "n_seqs": 303, "length": 110, "gap_rates": [0.3465346534653465, 0.1782178217821782, 0.16831683168316833, 0.16501650165016502, 0.12871287128712872, 0.12211221122112212, 0.11221122112211221, 0.07590759075907591, 0.07590759075907591, 0.07590759075907591, 0.6600660066006601, 0.066006600660066, 0.0429042904290429, 0.0297029702970297, 0.0297029702970297, 0.0297029702970297, 0.0297029702970297, 0.0297029702970297, 0.033003300330033, 0.026402640264026403, 0.0231023102310231, 0.0231023102310231, 0.0231023102310231, 0.0165016501650165, 0.0165016501650165, 0.013201320132013201, 0.7458745874587459, 0.013201320132013201, 0.013201320132013201, 0.013201320132013201, 0.009900990099009901, 0.009900990099009901, 0.12211221122112212, 0.1353135313531353, 0.14521452145214522, 0.0165016501650165, 0.019801980198019802, 0.019801980198019802, 0.019801980198019802, 0.013201320132013201, 0.013201320132013201, 0.013201320132013201, 0.013201320132013201, 0.013201320132013201, 0.013201320132013201, 0.013201320132013201, 0.013201320132013201, 0.013201320132013201, 0.44554455445544555, 0.5742574257425742, 0.7557755775577558, 0.7029702970297029, 0.5214521452145214, 0.013201320132013201, 0.0165016501650165, 0.0165016501650165, 0.0165016501650165, 0.0165016501650165, 0.0165016501650165, 0.0165016501650165, 0.0165016501650165, 0.0165016501650165, 0.0165016501650165, 0.0165016501650165, 0.019801980198019802, 0.0165016501650165, 0.0165016501650165, 0.6138613861386139, 0.026402640264026403, 0.0165016501650165, 0.0165016501650165, 0.0165016501650165, 0.0165016501650165, 0.0165016501650165, 0.0165016501650165, 0.0165016501650165, 0.0165016501650165, 0.0297029702970297, 0.0231023102310231, 0.0297029702970297, 0.0297029702970297, 0.066006600660066, 0.0891089108910891, 0.052805280528052806, 0.9273927392739274, 0.0627062706270627, 0.0297029702970297, 0.0429042904290429, 0.0429042904290429, 0.0429042904290429, 0.0429042904290429, 0.0462046204620462, 0.0462046204620462, 0.19141914191419143, 0.6468646864686468, 0.9438943894389439, 0.900990099009901, 0.1716171617161716, 0.1419141914191419, 0.11551155115511551, 0.15181518151815182, 0.15181518151815182, 0.1551155115511551, 0.15841584158415842, 0.16501650165016502, 0.16501650165016502, 0.17491749174917492, 0.17491749174917492, 0.18811881188118812, 0.5181518151815182], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF748.gap.json b/pfam_gap_rates/DUF748.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a8a163354b70c1752ca796f9657ab28ebe036ab1
--- /dev/null
+++ b/pfam_gap_rates/DUF748.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF773.gap.json b/pfam_gap_rates/DUF773.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f759008a8fd483ce2354117f7514c65e56703281
--- /dev/null
+++ b/pfam_gap_rates/DUF773.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF810.gap.json b/pfam_gap_rates/DUF810.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a401deddc6f9a3d77f0bf755dac69f6f7b9e5cd8
--- /dev/null
+++ b/pfam_gap_rates/DUF810.gap.json
@@ -0,0 +1 @@
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"mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF817.gap.json b/pfam_gap_rates/DUF817.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a4cb90e4b2d3dddadd36cfd983a42f1904989329
--- /dev/null
+++ b/pfam_gap_rates/DUF817.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF829.gap.json b/pfam_gap_rates/DUF829.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..29d27c3462578e5b85fe4626bc9183fff9b4b8fc
--- /dev/null
+++ b/pfam_gap_rates/DUF829.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF853.gap.json b/pfam_gap_rates/DUF853.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..1f9eb9c48bdda419b9e233f3d83ced6ae1c3d77d
--- /dev/null
+++ b/pfam_gap_rates/DUF853.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF866.gap.json b/pfam_gap_rates/DUF866.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..08255d615d67c131391dc0fa15cf3df64de31fb6
--- /dev/null
+++ b/pfam_gap_rates/DUF866.gap.json
@@ -0,0 +1 @@
+{"family": "DUF866", "n_seqs": 338, "length": 169, "gap_rates": [0.7958579881656804, 0.2603550295857988, 0.23668639053254437, 0.21301775147928995, 0.20710059171597633, 0.19822485207100593, 0.1893491124260355, 0.1863905325443787, 0.1834319526627219, 0.1804733727810651, 0.17751479289940827, 0.17751479289940827, 0.17751479289940827, 0.17751479289940827, 0.17751479289940827, 0.17751479289940827, 0.257396449704142, 0.6301775147928994, 0.9171597633136095, 0.7189349112426036, 0.6420118343195266, 0.3757396449704142, 0.21597633136094674, 0.1804733727810651, 0.16568047337278108, 0.16272189349112426, 0.16272189349112426, 0.15976331360946747, 0.15680473372781065, 0.15384615384615385, 0.14201183431952663, 0.14201183431952663, 0.1390532544378698, 0.14201183431952663, 0.1390532544378698, 0.14201183431952663, 0.14201183431952663, 0.2514792899408284, 0.15088757396449703, 0.15088757396449703, 0.15088757396449703, 0.14201183431952663, 0.14497041420118342, 0.14201183431952663, 0.15088757396449703, 0.1390532544378698, 0.13313609467455623, 0.13609467455621302, 0.13313609467455623, 0.1242603550295858, 0.1242603550295858, 0.1301775147928994, 0.1301775147928994, 0.1804733727810651, 0.14792899408284024, 0.13609467455621302, 0.12130177514792899, 0.11538461538461539, 0.11538461538461539, 0.9289940828402367, 0.11834319526627218, 0.12130177514792899, 0.11834319526627218, 0.11242603550295859, 0.10650887573964497, 0.10059171597633136, 0.10059171597633136, 0.10355029585798817, 0.10355029585798817, 0.10059171597633136, 0.10059171597633136, 0.09171597633136094, 0.08284023668639054, 0.08284023668639054, 0.08579881656804733, 0.08579881656804733, 0.08579881656804733, 0.08875739644970414, 0.08579881656804733, 0.08579881656804733, 0.08579881656804733, 0.3609467455621302, 0.8609467455621301, 0.9289940828402367, 0.9497041420118343, 0.9349112426035503, 0.8816568047337278, 0.7928994082840237, 0.09763313609467456, 0.09763313609467456, 0.08875739644970414, 0.09171597633136094, 0.07692307692307693, 0.07988165680473373, 0.09763313609467456, 0.09171597633136094, 0.09467455621301775, 0.20710059171597633, 0.8875739644970414, 0.8579881656804734, 0.14201183431952663, 0.11834319526627218, 0.10650887573964497, 0.07988165680473373, 0.9497041420118343, 0.07396449704142012, 0.06804733727810651, 0.06804733727810651, 0.0650887573964497, 0.0650887573964497, 0.0650887573964497, 0.0650887573964497, 0.0621301775147929, 0.0621301775147929, 0.0650887573964497, 0.0650887573964497, 0.07100591715976332, 0.07100591715976332, 0.07100591715976332, 0.07396449704142012, 0.07396449704142012, 0.08875739644970414, 0.07988165680473373, 0.11834319526627218, 0.08579881656804733, 0.9497041420118343, 0.08579881656804733, 0.08875739644970414, 0.08875739644970414, 0.09171597633136094, 0.08875739644970414, 0.12130177514792899, 0.4230769230769231, 0.08875739644970414, 0.08875739644970414, 0.09171597633136094, 0.09171597633136094, 0.08875739644970414, 0.09171597633136094, 0.15976331360946747, 0.08579881656804733, 0.08579881656804733, 0.08579881656804733, 0.08875739644970414, 0.09467455621301775, 0.22781065088757396, 0.11242603550295859, 0.10946745562130178, 0.11242603550295859, 0.11538461538461539, 0.11538461538461539, 0.11538461538461539, 0.11834319526627218, 0.12130177514792899, 0.13313609467455623, 0.1242603550295858, 0.1390532544378698, 0.1390532544378698, 0.14497041420118342, 0.14497041420118342, 0.14792899408284024, 0.14792899408284024, 0.15680473372781065, 0.16568047337278108, 0.17159763313609466, 0.17159763313609466, 0.1804733727810651, 0.1952662721893491, 0.757396449704142], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF91.gap.json b/pfam_gap_rates/DUF91.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e189ddd72d24a2cac42665854c2e6057c84794e5
--- /dev/null
+++ b/pfam_gap_rates/DUF91.gap.json
@@ -0,0 +1 @@
+{"family": "DUF91", "n_seqs": 400, "length": 251, "gap_rates": [0.895, 0.845, 0.3825, 0.38, 0.36, 0.36, 0.3575, 0.355, 0.355, 0.3525, 0.3525, 0.345, 0.345, 0.345, 0.345, 0.3475, 0.36, 0.345, 0.3475, 0.345, 0.345, 0.345, 0.3425, 0.325, 0.325, 0.325, 0.3225, 0.3225, 0.3175, 0.315, 0.315, 0.315, 0.315, 0.315, 0.315, 0.315, 0.3125, 0.3125, 0.3125, 0.3125, 0.3125, 0.435, 0.3125, 0.3125, 0.3125, 0.3125, 0.3125, 0.315, 0.315, 0.315, 0.3125, 0.3125, 0.3125, 0.315, 0.31, 0.31, 0.31, 0.31, 0.925, 0.935, 0.945, 0.9425, 0.925, 0.9175, 0.5125, 0.94, 0.945, 0.9425, 0.935, 0.415, 0.3675, 0.9, 0.92, 0.93, 0.925, 0.915, 0.895, 0.38, 0.3775, 0.9475, 0.9425, 0.355, 0.3925, 0.3775, 0.365, 0.345, 0.345, 0.3325, 0.325, 0.95, 0.32, 0.94, 0.3225, 0.9125, 0.32, 0.3175, 0.315, 0.315, 0.315, 0.315, 0.315, 0.315, 0.315, 0.3175, 0.32, 0.3175, 0.315, 0.315, 0.315, 0.3175, 0.3175, 0.3175, 0.315, 0.3175, 0.32, 0.3175, 0.3175, 0.3175, 0.31, 0.31, 0.31, 0.3075, 0.305, 0.2875, 0.2625, 0.1675, 0.1275, 0.1225, 0.12, 0.12, 0.12, 0.12, 0.12, 0.1175, 0.1125, 0.105, 0.1025, 0.1025, 0.1025, 0.1025, 0.1025, 0.1425, 0.1025, 0.0975, 0.0925, 0.09, 0.09, 0.085, 0.0825, 0.075, 0.07, 0.0675, 0.0675, 0.0675, 0.065, 0.065, 0.065, 0.945, 0.0625, 0.0625, 0.0625, 0.0625, 0.0625, 0.0625, 0.0625, 0.065, 0.0675, 0.0625, 0.0625, 0.0675, 0.0625, 0.065, 0.0625, 0.0625, 0.0625, 0.065, 0.065, 0.065, 0.065, 0.67, 0.0675, 0.0775, 0.085, 0.085, 0.0825, 0.0825, 0.0825, 0.085, 0.085, 0.085, 0.09, 0.09, 0.1075, 0.12, 0.125, 0.1225, 0.13, 0.1375, 0.1425, 0.1575, 0.17, 0.245, 0.94, 0.195, 0.19, 0.1925, 0.1975, 0.2025, 0.2025, 0.2025, 0.21, 0.215, 0.2325, 0.2525, 0.2625, 0.265, 0.27, 0.275, 0.2875, 0.295, 0.3075, 0.31, 0.31, 0.3175, 0.3175, 0.3225, 0.3275, 0.3275, 0.3275, 0.33, 0.3325, 0.335, 0.3375, 0.3475, 0.9225, 0.94, 0.3975, 0.4125, 0.4175, 0.43, 0.435, 0.4425, 0.45, 0.4625, 0.465, 0.4875, 0.49, 0.515, 0.5375, 0.5875, 0.6675], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF927.gap.json b/pfam_gap_rates/DUF927.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e7799c433eb35517e05fdcaf3765c03eecbdd68f
--- /dev/null
+++ b/pfam_gap_rates/DUF927.gap.json
@@ -0,0 +1 @@
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diff --git a/pfam_gap_rates/DUF928.gap.json b/pfam_gap_rates/DUF928.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..7a326a384234796788891df89aff49de6ac31135
--- /dev/null
+++ b/pfam_gap_rates/DUF928.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF938.gap.json b/pfam_gap_rates/DUF938.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..1722b264e885491de78b82de21f97715cb13a951
--- /dev/null
+++ b/pfam_gap_rates/DUF938.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF953.gap.json b/pfam_gap_rates/DUF953.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..6b2e250299d6039f07b774f3280ce871f17164f5
--- /dev/null
+++ b/pfam_gap_rates/DUF953.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF979.gap.json b/pfam_gap_rates/DUF979.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e449d9ca5bc17fbf65faadc96d02394381e70d7d
--- /dev/null
+++ b/pfam_gap_rates/DUF979.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF99.gap.json b/pfam_gap_rates/DUF99.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..8b2e6aa8c098119e65784c490fc64fa7b875572f
--- /dev/null
+++ b/pfam_gap_rates/DUF99.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF993.gap.json b/pfam_gap_rates/DUF993.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..3b412d41abf904d0f688dbeb95e6e15f49350914
--- /dev/null
+++ b/pfam_gap_rates/DUF993.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DXPR_C.gap.json b/pfam_gap_rates/DXPR_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..11261a3354cd7da558972d22b46a0d245b1411ed
--- /dev/null
+++ b/pfam_gap_rates/DXPR_C.gap.json
@@ -0,0 +1 @@
+{"family": "DXPR_C", "n_seqs": 1655, "length": 124, "gap_rates": [0.20966767371601208, 0.03625377643504532, 0.014501510574018127, 0.010876132930513595, 0.009667673716012085, 0.008459214501510574, 0.008459214501510574, 0.008459214501510574, 0.008459214501510574, 0.008459214501510574, 0.008459214501510574, 0.008459214501510574, 0.00785498489425982, 0.00785498489425982, 0.00785498489425982, 0.013293051359516616, 0.00906344410876133, 0.00785498489425982, 0.00785498489425982, 0.06767371601208459, 0.8839879154078549, 0.09607250755287008, 0.05981873111782477, 0.008459214501510574, 0.923262839879154, 0.012688821752265862, 0.011480362537764351, 0.00785498489425982, 0.00785498489425982, 0.00785498489425982, 0.011480362537764351, 0.012084592145015106, 0.009667673716012085, 0.025981873111782478, 0.021148036253776436, 0.006646525679758308, 0.006646525679758308, 0.006042296072507553, 0.006042296072507553, 0.006042296072507553, 0.006042296072507553, 0.006042296072507553, 0.006646525679758308, 0.005438066465256798, 0.005438066465256798, 0.006042296072507553, 0.005438066465256798, 0.005438066465256798, 0.006042296072507553, 0.006042296072507553, 0.006042296072507553, 0.006042296072507553, 0.006042296072507553, 0.006646525679758308, 0.0072507552870090634, 0.006042296072507553, 0.006042296072507553, 0.005438066465256798, 0.00785498489425982, 0.027794561933534745, 0.006646525679758308, 0.004833836858006042, 0.004229607250755287, 0.004229607250755287, 0.004833836858006042, 0.004229607250755287, 0.0036253776435045317, 0.0036253776435045317, 0.0036253776435045317, 0.0036253776435045317, 0.002416918429003021, 0.002416918429003021, 0.002416918429003021, 0.002416918429003021, 0.002416918429003021, 0.002416918429003021, 0.002416918429003021, 0.002416918429003021, 0.002416918429003021, 0.0030211480362537764, 0.0030211480362537764, 0.0030211480362537764, 0.0036253776435045317, 0.004229607250755287, 0.004229607250755287, 0.004833836858006042, 0.004833836858006042, 0.004833836858006042, 0.005438066465256798, 0.006646525679758308, 0.0072507552870090634, 0.0072507552870090634, 0.0072507552870090634, 0.0072507552870090634, 0.0072507552870090634, 0.0072507552870090634, 0.00906344410876133, 0.760725075528701, 0.9178247734138972, 0.9389728096676737, 0.8779456193353474, 0.7462235649546828, 0.010876132930513595, 0.050151057401812686, 0.024773413897280966, 0.023564954682779457, 0.012688821752265862, 0.012688821752265862, 0.012084592145015106, 0.012688821752265862, 0.012688821752265862, 0.013293051359516616, 0.013293051359516616, 0.013293051359516616, 0.013897280966767372, 0.015105740181268883, 0.015105740181268883, 0.017522658610271902, 0.01933534743202417, 0.021148036253776436, 0.025377643504531724, 0.03141993957703928, 0.045317220543806644, 0.1661631419939577], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DctM.gap.json b/pfam_gap_rates/DctM.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..3f75dc91011be6b2c7391979fd5cb490e9abdc0d
--- /dev/null
+++ b/pfam_gap_rates/DctM.gap.json
@@ -0,0 +1 @@
+{"family": "DctM", "n_seqs": 5000, "length": 480, "gap_rates": [0.5994, 0.3056, 0.1702, 0.1402, 0.124, 0.119, 0.114, 0.1112, 0.11, 0.1086, 0.1088, 0.1072, 0.1062, 0.1094, 0.1074, 0.1046, 0.1036, 0.102, 0.1024, 0.1024, 0.1036, 0.103, 0.1058, 0.7852, 0.6596, 0.1124, 0.114, 0.11, 0.109, 0.1094, 0.1108, 0.108, 0.1108, 0.1146, 0.8974, 0.7112, 0.6872, 0.6446, 0.5804, 0.77, 0.7854, 0.8016, 0.9406, 0.9482, 0.9232, 0.793, 0.7768, 0.7592, 0.1582, 0.125, 0.1462, 0.4912, 0.1236, 0.1102, 0.1044, 0.1004, 0.0998, 0.098, 0.0986, 0.0936, 0.8218, 0.8268, 0.8384, 0.857, 0.828, 0.8244, 0.8104, 0.0924, 0.0916, 0.0912, 0.0922, 0.0892, 0.089, 0.0888, 0.0876, 0.089, 0.0866, 0.0876, 0.2184, 0.0872, 0.0852, 0.085, 0.085, 0.085, 0.085, 0.085, 0.0844, 0.0848, 0.085, 0.0842, 0.0846, 0.0844, 0.0842, 0.0842, 0.0844, 0.084, 0.0842, 0.0844, 0.0844, 0.0844, 0.0848, 0.0848, 0.0848, 0.085, 0.0884, 0.085, 0.0848, 0.0848, 0.0846, 0.0844, 0.0846, 0.0846, 0.0848, 0.0848, 0.0844, 0.084, 0.0834, 0.0834, 0.0834, 0.083, 0.083, 0.0826, 0.0828, 0.0828, 0.0826, 0.0826, 0.0824, 0.0824, 0.0826, 0.0828, 0.0832, 0.0834, 0.0832, 0.083, 0.083, 0.084, 0.0832, 0.0834, 0.0828, 0.0832, 0.083, 0.0828, 0.0826, 0.0822, 0.0824, 0.0822, 0.0826, 0.0838, 0.0834, 0.0834, 0.0838, 0.0836, 0.0836, 0.0836, 0.0834, 0.0832, 0.083, 0.083, 0.0828, 0.083, 0.0826, 0.0832, 0.083, 0.0822, 0.0824, 0.0832, 0.0832, 0.0824, 0.0828, 0.0826, 0.0826, 0.0824, 0.0826, 0.0816, 0.0814, 0.0808, 0.0806, 0.0806, 0.0804, 0.6844, 0.944, 0.7452, 0.0788, 0.0772, 0.0804, 0.0808, 0.0808, 0.081, 0.0814, 0.0814, 0.0812, 0.0812, 0.0802, 0.0788, 0.0772, 0.0774, 0.0774, 0.0772, 0.0768, 0.0758, 0.0748, 0.0748, 0.0804, 0.081, 0.081, 0.0792, 0.0788, 0.0784, 0.0792, 0.0788, 0.0788, 0.0782, 0.078, 0.0788, 0.0794, 0.7122, 0.1032, 0.0948, 0.0868, 0.0864, 0.0868, 0.0808, 0.7802, 0.845, 0.9036, 0.9442, 0.9498, 0.9338, 0.8796, 0.8252, 0.7148, 0.081, 0.0872, 0.0856, 0.0852, 0.0842, 0.083, 0.0824, 0.0824, 0.0802, 0.0796, 0.0788, 0.0778, 0.0762, 0.077, 0.076, 0.0762, 0.0772, 0.9448, 0.2256, 0.087, 0.0652, 0.0638, 0.063, 0.0612, 0.0598, 0.0598, 0.0592, 0.059, 0.0596, 0.0636, 0.0594, 0.0608, 0.0636, 0.0614, 0.0614, 0.0614, 0.0618, 0.0616, 0.062, 0.0684, 0.0618, 0.0588, 0.0572, 0.057, 0.0564, 0.0554, 0.055, 0.0556, 0.056, 0.0574, 0.0564, 0.058, 0.058, 0.061, 0.065, 0.3982, 0.8756, 0.9042, 0.9202, 0.9328, 0.9408, 0.9462, 0.9362, 0.9252, 0.9126, 0.8914, 0.7986, 0.0844, 0.0846, 0.0846, 0.0846, 0.0864, 0.088, 0.088, 0.0876, 0.0884, 0.0866, 0.0868, 0.072, 0.9476, 0.9494, 0.948, 0.9446, 0.0726, 0.0726, 0.072, 0.0722, 0.0724, 0.0718, 0.0716, 0.072, 0.0726, 0.0734, 0.0718, 0.0722, 0.0728, 0.0732, 0.0732, 0.0736, 0.0736, 0.074, 0.074, 0.074, 0.074, 0.0746, 0.0748, 0.0748, 0.0784, 0.079, 0.0798, 0.0798, 0.075, 0.075, 0.075, 0.0756, 0.0756, 0.0756, 0.0764, 0.0758, 0.0754, 0.0752, 0.0756, 0.0756, 0.0754, 0.0752, 0.086, 0.0792, 0.0762, 0.8208, 0.076, 0.0842, 0.0776, 0.0756, 0.0754, 0.0756, 0.0756, 0.0756, 0.0752, 0.075, 0.0756, 0.0754, 0.0756, 0.0758, 0.0758, 0.0762, 0.0764, 0.076, 0.0758, 0.0758, 0.076, 0.0762, 0.0762, 0.0758, 0.076, 0.076, 0.0758, 0.0758, 0.0758, 0.0758, 0.0752, 0.0754, 0.0754, 0.0758, 0.0772, 0.0776, 0.0778, 0.078, 0.077, 0.0776, 0.0766, 0.0756, 0.9078, 0.9084, 0.9108, 0.9102, 0.9084, 0.9072, 0.0762, 0.0768, 0.0768, 0.0768, 0.0766, 0.0768, 0.0766, 0.077, 0.0768, 0.0768, 0.0766, 0.0772, 0.0774, 0.0776, 0.0774, 0.0776, 0.0778, 0.079, 0.079, 0.079, 0.079, 0.0798, 0.0798, 0.08, 0.08, 0.0802, 0.0802, 0.0804, 0.0804, 0.0804, 0.0804, 0.66, 0.8196, 0.8272, 0.8284, 0.829, 0.8282, 0.8228, 0.813, 0.6456, 0.0808, 0.9022, 0.0822, 0.0826, 0.0822, 0.0824, 0.0822, 0.0822, 0.0824, 0.0834, 0.0834, 0.084, 0.0844, 0.0846, 0.0856, 0.0864, 0.0878, 0.0898, 0.0914, 0.0928, 0.0946, 0.0976, 0.1022, 0.1058, 0.1152, 0.1362, 0.1666, 0.2086, 0.2472, 0.2648, 0.3394, 0.6294], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Dehalogenase.gap.json b/pfam_gap_rates/Dehalogenase.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..0a257610043b41a6e561157ea571e03be68bdfad
--- /dev/null
+++ b/pfam_gap_rates/Dehalogenase.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Di19_C.gap.json b/pfam_gap_rates/Di19_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..3f943564d5656fc1f81baadc4f21774c95980189
--- /dev/null
+++ b/pfam_gap_rates/Di19_C.gap.json
@@ -0,0 +1 @@
+{"family": "Di19_C", "n_seqs": 154, "length": 117, "gap_rates": [0.461038961038961, 0.33116883116883117, 0.2792207792207792, 0.2597402597402597, 0.2532467532467532, 0.24675324675324675, 0.24675324675324675, 0.2922077922077922, 0.2922077922077922, 0.22727272727272727, 0.24675324675324675, 0.2077922077922078, 0.18181818181818182, 0.17532467532467533, 0.14935064935064934, 0.14935064935064934, 0.14285714285714285, 0.13636363636363635, 0.13636363636363635, 0.14285714285714285, 0.7922077922077922, 0.8571428571428571, 0.9415584415584416, 0.7987012987012987, 0.7662337662337663, 0.16233766233766234, 0.16883116883116883, 0.38961038961038963, 0.35714285714285715, 0.9155844155844156, 0.7532467532467533, 0.3961038961038961, 0.07792207792207792, 0.05844155844155844, 0.05194805194805195, 0.045454545454545456, 0.032467532467532464, 0.025974025974025976, 0.025974025974025976, 0.025974025974025976, 0.025974025974025976, 0.025974025974025976, 0.025974025974025976, 0.025974025974025976, 0.11038961038961038, 0.025974025974025976, 0.025974025974025976, 0.025974025974025976, 0.17532467532467533, 0.17532467532467533, 0.01948051948051948, 0.05194805194805195, 0.05194805194805195, 0.03896103896103896, 0.03896103896103896, 0.045454545454545456, 0.03896103896103896, 0.045454545454545456, 0.045454545454545456, 0.05844155844155844, 0.9415584415584416, 0.6558441558441559, 0.08441558441558442, 0.12987012987012986, 0.07792207792207792, 0.07142857142857142, 0.032467532467532464, 0.032467532467532464, 0.032467532467532464, 0.025974025974025976, 0.045454545454545456, 0.045454545454545456, 0.045454545454545456, 0.03896103896103896, 0.03896103896103896, 0.03896103896103896, 0.03896103896103896, 0.03896103896103896, 0.03896103896103896, 0.05194805194805195, 0.03896103896103896, 0.07142857142857142, 0.045454545454545456, 0.05194805194805195, 0.07142857142857142, 0.14935064935064934, 0.6688311688311688, 0.07142857142857142, 0.07142857142857142, 0.09090909090909091, 0.09090909090909091, 0.09090909090909091, 0.09090909090909091, 0.09090909090909091, 0.09090909090909091, 0.12987012987012986, 0.09740259740259741, 0.09740259740259741, 0.09090909090909091, 0.09090909090909091, 0.7727272727272727, 0.7727272727272727, 0.7727272727272727, 0.7727272727272727, 0.09090909090909091, 0.09090909090909091, 0.09090909090909091, 0.09090909090909091, 0.1038961038961039, 0.1038961038961039, 0.1038961038961039, 0.1038961038961039, 0.1038961038961039, 0.1038961038961039, 0.1038961038961039, 0.14285714285714285, 0.23376623376623376], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Dicer_dimer.gap.json b/pfam_gap_rates/Dicer_dimer.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b104123aabacc4cf7b75e1c716f099ded4c5bbcc
--- /dev/null
+++ b/pfam_gap_rates/Dicer_dimer.gap.json
@@ -0,0 +1 @@
+{"family": "Dicer_dimer", "n_seqs": 493, "length": 113, "gap_rates": [0.17647058823529413, 0.1257606490872211, 0.09533468559837728, 0.09127789046653144, 0.08924949290060852, 0.0872210953346856, 0.08519269776876268, 0.08316430020283976, 0.08113590263691683, 0.08113590263691683, 0.07910750507099391, 0.07707910750507099, 0.07505070993914807, 0.08113590263691683, 0.07707910750507099, 0.07707910750507099, 0.0973630831643002, 0.08519269776876268, 0.07910750507099391, 0.9087221095334685, 0.07302231237322515, 0.05070993914807302, 0.036511156186612576, 0.036511156186612576, 0.034482758620689655, 0.028397565922920892, 0.030425963488843813, 0.06490872210953347, 0.06896551724137931, 0.1440162271805274, 0.6044624746450304, 0.7281947261663286, 0.8742393509127789, 0.8864097363083164, 0.9107505070993914, 0.9188640973630832, 0.920892494929006, 0.9269776876267748, 0.9452332657200812, 0.9330628803245437, 0.922920892494929, 0.920892494929006, 0.9168356997971603, 0.9087221095334685, 0.8843813387423936, 0.8377281947261663, 0.6186612576064908, 0.5720081135902637, 0.4077079107505071, 0.12170385395537525, 0.06896551724137931, 0.028397565922920892, 0.028397565922920892, 0.02434077079107505, 0.014198782961460446, 0.012170385395537525, 0.012170385395537525, 0.012170385395537525, 0.010141987829614604, 0.012170385395537525, 0.010141987829614604, 0.018255578093306288, 0.010141987829614604, 0.02028397565922921, 0.7322515212981744, 0.9290060851926978, 0.9148073022312373, 0.7261663286004056, 0.012170385395537525, 0.7606490872210954, 0.018255578093306288, 0.016227180527383367, 0.014198782961460446, 0.012170385395537525, 0.014198782961460446, 0.7849898580121704, 0.08316430020283976, 0.06896551724137931, 0.018255578093306288, 0.012170385395537525, 0.012170385395537525, 0.012170385395537525, 0.012170385395537525, 0.012170385395537525, 0.010141987829614604, 0.008113590263691683, 0.006085192697768763, 0.004056795131845842, 0.006085192697768763, 0.006085192697768763, 0.006085192697768763, 0.006085192697768763, 0.008113590263691683, 0.010141987829614604, 0.010141987829614604, 0.010141987829614604, 0.010141987829614604, 0.012170385395537525, 0.012170385395537525, 0.012170385395537525, 0.012170385395537525, 0.014198782961460446, 0.018255578093306288, 0.02636916835699797, 0.036511156186612576, 0.04259634888438134, 0.04462474645030426, 0.06288032454361055, 0.08113590263691683, 0.09330628803245436, 0.25760649087221094, 0.385395537525355, 0.5740365111561866], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Dimer_Tnp_hAT.gap.json b/pfam_gap_rates/Dimer_Tnp_hAT.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c8a5d434fa2a34da4b40f52dcbc2afdab5e1be16
--- /dev/null
+++ b/pfam_gap_rates/Dimer_Tnp_hAT.gap.json
@@ -0,0 +1 @@
+{"family": "Dimer_Tnp_hAT", "n_seqs": 4266, "length": 92, "gap_rates": [0.8333333333333334, 0.7794186591654946, 0.7494139709329583, 0.7280825128926395, 0.7088607594936709, 0.7018284106891702, 0.6879981247069855, 0.6826066572902016, 0.9102203469292077, 0.6741678387248008, 0.6584622597280825, 0.6451007969995312, 0.6394749179559306, 0.6589310829817159, 0.6734646038443507, 0.7810595405532115, 0.8492733239568683, 0.9362400375058603, 0.9055321143928738, 0.7456633849038913, 0.606657290201594, 0.5229723394280357, 0.43014533520862636, 0.41678387248007503, 0.4048288795124238, 0.3931082981715893, 0.38420065635255507, 0.37388654477262073, 0.35841537740271917, 0.8849038912330052, 0.8469292076887014, 0.28785747773089543, 0.24988279418659165, 0.20792311298640412, 0.16619784341303329, 0.139943741209564, 0.10056258790436005, 0.09517112048757619, 0.08438818565400844, 0.07266760431317393, 0.06891701828410689, 0.06305672761368963, 0.04336615096108767, 0.03844350679793718, 0.03352086263478669, 0.026957337083919362, 0.024847632442569153, 0.02250351617440225, 0.020393811533052038, 0.01922175339896859, 0.017580872011251757, 0.014533520862634786, 0.01617440225035162, 0.019456165025785278, 0.02086263478668542, 0.023206751054852322, 0.02461322081575246, 0.026957337083919362, 0.029535864978902954, 0.030239099859353025, 0.03914674167838725, 0.03563056727613689, 0.038912330051570555, 0.04383497421472105, 0.6418190342240975, 0.6291608063759963, 0.06329113924050633, 0.06235349273323957, 0.06352555086732302, 0.06821378340365682, 0.0710267229254571, 0.07665260196905767, 0.08227848101265822, 0.08462259728082513, 0.08931082981715893, 0.09634317862165963, 0.10173464603844351, 0.11486169714017816, 0.12165963431786217, 0.12892639474917955, 0.13595874355368026, 0.14556962025316456, 0.15564932020628222, 0.16947960618846694, 0.18377871542428503, 0.19807782466010315, 0.2301922175339897, 0.25621190811064226, 0.3014533520862635, 0.37365213314580403, 0.48171589310829815, 0.7475386779184248], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DisA_N.gap.json b/pfam_gap_rates/DisA_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c8d13fdbd62e929accef6338ded03b40dc7f3859
--- /dev/null
+++ b/pfam_gap_rates/DisA_N.gap.json
@@ -0,0 +1 @@
+{"family": "DisA_N", "n_seqs": 1565, "length": 132, "gap_rates": [0.25750798722044727, 0.09329073482428114, 0.05878594249201278, 0.043450479233226834, 0.030670926517571886, 0.0268370607028754, 0.024920127795527155, 0.023642172523961662, 0.023003194888178913, 0.022364217252396165, 0.022364217252396165, 0.022364217252396165, 0.022364217252396165, 0.022364217252396165, 0.022364217252396165, 0.023003194888178913, 0.022364217252396165, 0.022364217252396165, 0.022364217252396165, 0.022364217252396165, 0.022364217252396165, 0.022364217252396165, 0.934185303514377, 0.94185303514377, 0.9469648562300319, 0.9488817891373802, 0.9482428115015974, 0.9444089456869009, 0.9354632587859425, 0.9322683706070287, 0.023642172523961662, 0.9476038338658147, 0.02428115015974441, 0.022364217252396165, 0.022364217252396165, 0.021725239616613417, 0.027476038338658148, 0.02428115015974441, 0.020447284345047924, 0.020447284345047924, 0.020447284345047924, 0.020447284345047924, 0.019808306709265176, 0.019808306709265176, 0.020447284345047924, 0.020447284345047924, 0.019808306709265176, 0.019169329073482427, 0.019169329073482427, 0.016613418530351438, 0.017252396166134186, 0.017252396166134186, 0.01597444089456869, 0.01597444089456869, 0.30287539936102237, 0.29840255591054315, 0.2939297124600639, 0.29329073482428114, 0.2900958466453674, 0.011501597444089457, 0.011501597444089457, 0.010223642172523962, 0.010223642172523962, 0.010223642172523962, 0.010223642172523962, 0.009584664536741214, 0.008945686900958467, 0.008945686900958467, 0.7009584664536741, 0.008306709265175719, 0.7814696485623003, 0.008306709265175719, 0.008306709265175719, 0.0076677316293929714, 0.0076677316293929714, 0.0076677316293929714, 0.0076677316293929714, 0.008306709265175719, 0.008306709265175719, 0.008306709265175719, 0.008306709265175719, 0.008945686900958467, 0.008306709265175719, 0.008945686900958467, 0.9028753993610223, 0.010223642172523962, 0.009584664536741214, 0.9386581469648563, 0.010862619808306708, 0.03194888178913738, 0.08242811501597444, 0.016613418530351438, 0.32843450479233227, 0.017252396166134186, 0.010223642172523962, 0.009584664536741214, 0.009584664536741214, 0.009584664536741214, 0.009584664536741214, 0.009584664536741214, 0.009584664536741214, 0.008945686900958467, 0.008945686900958467, 0.008945686900958467, 0.008945686900958467, 0.008306709265175719, 0.008306709265175719, 0.008306709265175719, 0.008945686900958467, 0.009584664536741214, 0.009584664536741214, 0.008945686900958467, 0.008945686900958467, 0.008945686900958467, 0.008945686900958467, 0.008945686900958467, 0.008945686900958467, 0.008945686900958467, 0.010223642172523962, 0.009584664536741214, 0.023642172523961662, 0.010862619808306708, 0.011501597444089457, 0.012140575079872205, 0.012779552715654952, 0.0134185303514377, 0.0134185303514377, 0.01853035143769968, 0.02619808306709265, 0.11629392971246007, 0.26389776357827477, 0.8811501597444089], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DmpG_comm.gap.json b/pfam_gap_rates/DmpG_comm.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..441c5236fea2feb1fe9500ef12dddd8d3a8e8c31
--- /dev/null
+++ b/pfam_gap_rates/DmpG_comm.gap.json
@@ -0,0 +1 @@
+{"family": "DmpG_comm", "n_seqs": 282, "length": 63, "gap_rates": [0.851063829787234, 0.0673758865248227, 0.03900709219858156, 0.02127659574468085, 0.010638297872340425, 0.010638297872340425, 0.0035460992907801418, 0.0035460992907801418, 0.0035460992907801418, 0.0035460992907801418, 0.0035460992907801418, 0.0035460992907801418, 0.0035460992907801418, 0.0035460992907801418, 0.0035460992907801418, 0.0035460992907801418, 0.0035460992907801418, 0.0035460992907801418, 0.0035460992907801418, 0.0035460992907801418, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0035460992907801418, 0.0070921985815602835, 0.0070921985815602835, 0.0070921985815602835, 0.0070921985815602835, 0.0070921985815602835, 0.0070921985815602835, 0.0070921985815602835, 0.0070921985815602835, 0.0070921985815602835, 0.0070921985815602835, 0.0070921985815602835, 0.010638297872340425, 0.014184397163120567, 0.014184397163120567, 0.014184397163120567, 0.014184397163120567, 0.014184397163120567, 0.014184397163120567, 0.014184397163120567, 0.014184397163120567, 0.014184397163120567, 0.014184397163120567, 0.014184397163120567, 0.014184397163120567, 0.014184397163120567, 0.014184397163120567, 0.014184397163120567, 0.02127659574468085, 0.031914893617021274, 0.1099290780141844, 0.6595744680851063], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DmsC.gap.json b/pfam_gap_rates/DmsC.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..0010ebbea804c550e4a6949db9e311c7bed6c2bd
--- /dev/null
+++ b/pfam_gap_rates/DmsC.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DnaB_C.gap.json b/pfam_gap_rates/DnaB_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..21b225922802b889bcd89cc0b0539d91166b6ae5
--- /dev/null
+++ b/pfam_gap_rates/DnaB_C.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DndB.gap.json b/pfam_gap_rates/DndB.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..7b4975ed71c0aeea8d726b8b51e85e25ddec9503
--- /dev/null
+++ b/pfam_gap_rates/DndB.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Dynactin.gap.json b/pfam_gap_rates/Dynactin.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f85760e37385b1f2b385e889fa7fa7d876c89250
--- /dev/null
+++ b/pfam_gap_rates/Dynactin.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/E1_dh.gap.json b/pfam_gap_rates/E1_dh.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..eea3ed677c07d9726adcf08285058c8ebe29b024
--- /dev/null
+++ b/pfam_gap_rates/E1_dh.gap.json
@@ -0,0 +1 @@
+{"family": "E1_dh", "n_seqs": 4791, "length": 340, "gap_rates": [0.9062826132331455, 0.5727405552076811, 0.45105405969526197, 0.38697557921102066, 0.3420997704028387, 0.3003548319766228, 0.2542266750156543, 0.213734084742225, 0.16948445001043624, 0.15424754748486746, 0.1498643289501148, 0.14610728449175536, 0.14214151534126487, 0.1358797745773325, 0.13128783135044875, 0.12961803381340012, 0.1258609893550407, 0.12293884366520559, 0.12106032143602588, 0.11730327697766646, 0.1068670423711125, 0.09851805468586934, 0.09580463368816532, 0.09079524107701942, 0.08787309538718431, 0.08474222500521812, 0.08453350031308704, 0.08348987685243164, 0.08328115216030056, 0.08286370277603841, 0.08182007931538302, 0.08098518054685869, 0.08077645585472762, 0.08098518054685869, 0.08369860154456273, 0.08369860154456273, 0.08161135462325193, 0.08161135462325193, 0.08035900647046545, 0.07994155708620329, 0.07764558547276143, 0.07785431016489251, 0.07618451262784387, 0.07639323731997495, 0.07514088916718847, 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\ No newline at end of file
diff --git a/pfam_gap_rates/EDR1.gap.json b/pfam_gap_rates/EDR1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..cfac6897aa7301916c3472d07b19fd4bd0071a67
--- /dev/null
+++ b/pfam_gap_rates/EDR1.gap.json
@@ -0,0 +1 @@
+{"family": "EDR1", "n_seqs": 378, "length": 316, "gap_rates": [0.626984126984127, 0.47619047619047616, 0.3835978835978836, 0.3386243386243386, 0.30687830687830686, 0.29365079365079366, 0.28835978835978837, 0.28835978835978837, 0.2857142857142857, 0.25396825396825395, 0.24603174603174602, 0.24338624338624337, 0.24338624338624337, 0.23809523809523808, 0.23809523809523808, 0.373015873015873, 0.373015873015873, 0.23809523809523808, 0.23809523809523808, 0.23809523809523808, 0.23809523809523808, 0.23809523809523808, 0.23809523809523808, 0.23809523809523808, 0.23809523809523808, 0.23809523809523808, 0.23809523809523808, 0.23809523809523808, 0.23809523809523808, 0.455026455026455, 0.626984126984127, 0.626984126984127, 0.8068783068783069, 0.8121693121693122, 0.8068783068783069, 0.8042328042328042, 0.48677248677248675, 0.6031746031746031, 0.5476190476190477, 0.5238095238095238, 0.3888888888888889, 0.30952380952380953, 0.3253968253968254, 0.2222222222222222, 0.21693121693121692, 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\ No newline at end of file
diff --git a/pfam_gap_rates/EF-hand_7.gap.json b/pfam_gap_rates/EF-hand_7.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..7bc1bcb8de7c18bd3ccf37ef3412e270e844eee7
--- /dev/null
+++ b/pfam_gap_rates/EF-hand_7.gap.json
@@ -0,0 +1 @@
+{"family": "EF-hand_7", "n_seqs": 5000, "length": 86, "gap_rates": [0.8686, 0.5762, 0.3802, 0.2232, 0.143, 0.0724, 0.0362, 0.0244, 0.018, 0.0124, 0.0094, 0.0078, 0.0064, 0.0056, 0.0056, 0.0008, 0.0008, 0.0006, 0.0006, 0.0006, 0.0006, 0.0006, 0.0006, 0.005, 0.005, 0.0514, 0.009, 0.013, 0.0188, 0.5384, 0.6742, 0.725, 0.7688, 0.792, 0.799, 0.85, 0.8862, 0.909, 0.9316, 0.9432, 0.9466, 0.9392, 0.9246, 0.893, 0.867, 0.8368, 0.0546, 0.0454, 0.022, 0.0224, 0.0218, 0.1372, 0.054, 0.0448, 0.0662, 0.041, 0.9332, 0.944, 0.9394, 0.9162, 0.0196, 0.0142, 0.0034, 0.0014, 0.0008, 0.0006, 0.001, 0.006, 0.0032, 0.0038, 0.0034, 0.0036, 0.0066, 0.0048, 0.0056, 0.007, 0.0084, 0.0116, 0.013, 0.0246, 0.0412, 0.0572, 0.1282, 0.2566, 0.4366, 0.856], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/EFG_IV.gap.json b/pfam_gap_rates/EFG_IV.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..dd0cae417cf58f85b89386e55cf8d9d8a3c6b1b2
--- /dev/null
+++ b/pfam_gap_rates/EFG_IV.gap.json
@@ -0,0 +1 @@
+{"family": "EFG_IV", "n_seqs": 4866, "length": 132, "gap_rates": [0.3226469379367037, 0.20982326346074806, 0.16974928072338677, 0.15474722564734894, 0.15125359638306618, 0.13501849568434032, 0.22277024249897245, 0.22975750102753803, 0.2075626798191533, 0.19687628442252364, 0.0762433210028771, 0.06391286477599671, 0.06267981915330867, 0.058364159473900536, 0.7053020961775586, 0.06432387998355939, 0.05219893136046034, 0.06350184956843404, 0.06699547883271681, 0.051787916152897656, 0.0632963419646527, 0.051171393341553635, 0.10110974106041924, 0.08220304151253596, 0.07685984381422113, 0.036374845869297165, 0.03370324702013974, 0.032881216605014384, 0.03185367858610769, 0.03164817098232635, 0.031442663378545004, 0.030620632963419648, 0.03020961775585697, 0.029182079736950268, 0.028976572133168926, 0.02836004932182491, 0.027538018906699546, 0.02651048088779285, 0.02219482120838471, 0.03596383066173448, 0.05425400739827373, 0.8327168105219893, 0.929305384299219, 0.949856144677353, 0.9077270859021784, 0.7784628031237156, 0.26942046855733665, 0.05754212905877518, 0.04521167283189478, 0.028154541718043567, 0.02794903411426223, 0.027743526510480888, 0.027743526510480888, 0.027538018906699546, 0.027743526510480888, 0.027127003699136867, 0.027127003699136867, 0.026715988491574187, 0.9258117550349363, 0.9284833538840938, 0.9268392930538429, 0.9227291409782162, 0.02692149609535553, 0.02651048088779285, 0.02568845047266749, 0.025893958076448828, 0.024866420057542128, 0.02383888203863543, 0.02322235922729141, 0.02301685162351007, 0.02301685162351007, 0.02281134401972873, 0.02260583641594739, 0.02260583641594739, 0.02260583641594739, 0.02260583641594739, 0.02281134401972873, 0.02322235922729141, 0.02322235922729141, 0.02322235922729141, 0.02322235922729141, 0.02157829839704069, 0.02157829839704069, 0.02157829839704069, 0.02178380600082203, 0.02157829839704069, 0.02178380600082203, 0.02198931360460337, 0.0721331689272503, 0.02198931360460337, 0.02240032881216605, 0.02198931360460337, 0.02198931360460337, 0.02198931360460337, 0.02240032881216605, 0.02219482120838471, 0.02240032881216605, 0.02240032881216605, 0.02240032881216605, 0.02260583641594739, 0.02301685162351007, 0.02281134401972873, 0.02383888203863543, 0.024866420057542128, 0.024866420057542128, 0.02548294286888615, 0.8183312782572956, 0.8123715577476367, 0.026715988491574187, 0.02609946568023017, 0.028154541718043567, 0.027538018906699546, 0.027538018906699546, 0.028154541718043567, 0.03020961775585697, 0.028565556925606247, 0.02877106452938759, 0.02877106452938759, 0.02877106452938759, 0.029182079736950268, 0.029182079736950268, 0.029593094944512947, 0.032059186189889025, 0.03247020139745171, 0.03308672420879573, 0.034319769831483764, 0.036991368680641186, 0.04336210439786272, 0.054048499794492395, 0.07912042745581586, 0.12248253185367859, 0.6543362104397863], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/EFTUD2.gap.json b/pfam_gap_rates/EFTUD2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e48948cf3eee50dfeefdbf38010ecf5d57f1166e
--- /dev/null
+++ b/pfam_gap_rates/EFTUD2.gap.json
@@ -0,0 +1 @@
+{"family": "EFTUD2", "n_seqs": 313, "length": 138, "gap_rates": [0.5207667731629393, 0.12140575079872204, 0.0926517571884984, 0.08945686900958466, 0.08945686900958466, 0.08945686900958466, 0.07987220447284345, 0.07987220447284345, 0.07987220447284345, 0.07987220447284345, 0.07987220447284345, 0.07987220447284345, 0.09584664536741214, 0.08306709265175719, 0.08306709265175719, 0.07987220447284345, 0.07667731629392971, 0.07667731629392971, 0.9424920127795527, 0.07667731629392971, 0.07667731629392971, 0.14057507987220447, 0.17252396166134185, 0.19808306709265175, 0.20447284345047922, 0.18849840255591055, 0.16932907348242812, 0.16613418530351437, 0.15654952076677317, 0.14376996805111822, 0.12779552715654952, 0.1182108626198083, 0.11182108626198083, 0.1182108626198083, 0.16293929712460065, 0.14696485623003194, 0.134185303514377, 0.14696485623003194, 0.1597444089456869, 0.18210862619808307, 0.21725239616613418, 0.26198083067092653, 0.9105431309904153, 0.9297124600638977, 0.9424920127795527, 0.939297124600639, 0.9233226837060703, 0.8881789137380192, 0.7412140575079872, 0.6230031948881789, 0.5335463258785943, 0.4249201277955272, 0.3354632587859425, 0.26198083067092653, 0.22364217252396165, 0.19488817891373802, 0.15335463258785942, 0.21725239616613418, 0.16932907348242812, 0.13099041533546327, 0.10862619808306709, 0.11182108626198083, 0.10223642172523961, 0.11501597444089456, 0.15335463258785942, 0.2747603833865815, 0.4536741214057508, 0.5079872204472844, 0.5303514376996805, 0.4504792332268371, 0.1757188498402556, 0.8434504792332268, 0.8817891373801917, 0.9169329073482428, 0.9424920127795527, 0.9488817891373802, 0.9424920127795527, 0.9424920127795527, 0.9009584664536742, 0.853035143769968, 0.8402555910543131, 0.03194888178913738, 0.02875399361022364, 0.02875399361022364, 0.03194888178913738, 0.02875399361022364, 0.038338658146964855, 0.03514376996805112, 0.03514376996805112, 0.038338658146964855, 0.03514376996805112, 0.03514376996805112, 0.03514376996805112, 0.02875399361022364, 0.022364217252396165, 0.019169329073482427, 0.01597444089456869, 0.022364217252396165, 0.022364217252396165, 0.022364217252396165, 0.022364217252396165, 0.10223642172523961, 0.038338658146964855, 0.022364217252396165, 0.022364217252396165, 0.019169329073482427, 0.022364217252396165, 0.022364217252396165, 0.025559105431309903, 0.02875399361022364, 0.02875399361022364, 0.02875399361022364, 0.03194888178913738, 0.02875399361022364, 0.02875399361022364, 0.02875399361022364, 0.02875399361022364, 0.02875399361022364, 0.02875399361022364, 0.02875399361022364, 0.02875399361022364, 0.03194888178913738, 0.038338658146964855, 0.04153354632587859, 0.04153354632587859, 0.04153354632587859, 0.05750798722044728, 0.0670926517571885, 0.0670926517571885, 0.07348242811501597, 0.07348242811501597, 0.07987220447284345, 0.10223642172523961, 0.13099041533546327, 0.1501597444089457, 0.19488817891373802, 0.2939297124600639, 0.31629392971246006], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/EF_assoc_2.gap.json b/pfam_gap_rates/EF_assoc_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..4c384106a27fc986ee0f1f8303fb792fc93d3b04
--- /dev/null
+++ b/pfam_gap_rates/EF_assoc_2.gap.json
@@ -0,0 +1 @@
+{"family": "EF_assoc_2", "n_seqs": 333, "length": 90, "gap_rates": [0.45345345345345345, 0.2012012012012012, 0.15015015015015015, 0.13813813813813813, 0.13213213213213212, 0.12312312312312312, 0.11711711711711711, 0.1021021021021021, 0.0990990990990991, 0.0960960960960961, 0.0960960960960961, 0.0960960960960961, 0.0960960960960961, 0.0960960960960961, 0.0960960960960961, 0.0960960960960961, 0.0960960960960961, 0.0960960960960961, 0.08708708708708708, 0.07807807807807808, 0.07507507507507508, 0.05405405405405406, 0.948948948948949, 0.9459459459459459, 0.04504504504504504, 0.03303303303303303, 0.024024024024024024, 0.024024024024024024, 0.024024024024024024, 0.024024024024024024, 0.024024024024024024, 0.02702702702702703, 0.02702702702702703, 0.024024024024024024, 0.024024024024024024, 0.024024024024024024, 0.024024024024024024, 0.024024024024024024, 0.024024024024024024, 0.021021021021021023, 0.018018018018018018, 0.018018018018018018, 0.015015015015015015, 0.012012012012012012, 0.012012012012012012, 0.012012012012012012, 0.021021021021021023, 0.024024024024024024, 0.012012012012012012, 0.015015015015015015, 0.015015015015015015, 0.015015015015015015, 0.015015015015015015, 0.015015015015015015, 0.015015015015015015, 0.015015015015015015, 0.015015015015015015, 0.015015015015015015, 0.015015015015015015, 0.015015015015015015, 0.015015015015015015, 0.018018018018018018, 0.018018018018018018, 0.018018018018018018, 0.03003003003003003, 0.03303303303303303, 0.042042042042042045, 0.057057057057057055, 0.06006006006006006, 0.1021021021021021, 0.06606606606606606, 0.9069069069069069, 0.06306306306306306, 0.06306306306306306, 0.06606606606606606, 0.10810810810810811, 0.08108108108108109, 0.07507507507507508, 0.07807807807807808, 0.08108108108108109, 0.08108108108108109, 0.08108108108108109, 0.08408408408408409, 0.09009009009009009, 0.09309309309309309, 0.1021021021021021, 0.10510510510510511, 0.11411411411411411, 0.1831831831831832, 0.3633633633633634], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/EIIBC-GUT_C.gap.json b/pfam_gap_rates/EIIBC-GUT_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..7bc80408dc1ac11f0cc612b3c1a209fcfe898793
--- /dev/null
+++ b/pfam_gap_rates/EIIBC-GUT_C.gap.json
@@ -0,0 +1 @@
+{"family": "EIIBC-GUT_C", "n_seqs": 114, "length": 94, "gap_rates": [0.03508771929824561, 0.008771929824561403, 0.008771929824561403, 0.008771929824561403, 0.008771929824561403, 0.008771929824561403, 0.008771929824561403, 0.008771929824561403, 0.008771929824561403, 0.008771929824561403, 0.008771929824561403, 0.008771929824561403, 0.008771929824561403, 0.008771929824561403, 0.008771929824561403, 0.008771929824561403, 0.008771929824561403, 0.9298245614035088, 0.008771929824561403, 0.008771929824561403, 0.008771929824561403, 0.008771929824561403, 0.008771929824561403, 0.008771929824561403, 0.008771929824561403, 0.008771929824561403, 0.008771929824561403, 0.008771929824561403, 0.008771929824561403, 0.008771929824561403, 0.008771929824561403, 0.008771929824561403, 0.0, 0.0, 0.0, 0.008771929824561403, 0.008771929824561403, 0.008771929824561403, 0.008771929824561403, 0.008771929824561403, 0.008771929824561403, 0.008771929824561403, 0.008771929824561403, 0.008771929824561403, 0.008771929824561403, 0.008771929824561403, 0.008771929824561403, 0.008771929824561403, 0.008771929824561403, 0.017543859649122806, 0.017543859649122806, 0.017543859649122806, 0.017543859649122806, 0.017543859649122806, 0.017543859649122806, 0.017543859649122806, 0.017543859649122806, 0.017543859649122806, 0.017543859649122806, 0.017543859649122806, 0.017543859649122806, 0.017543859649122806, 0.017543859649122806, 0.017543859649122806, 0.017543859649122806, 0.017543859649122806, 0.017543859649122806, 0.017543859649122806, 0.017543859649122806, 0.017543859649122806, 0.017543859649122806, 0.017543859649122806, 0.017543859649122806, 0.017543859649122806, 0.017543859649122806, 0.02631578947368421, 0.02631578947368421, 0.02631578947368421, 0.02631578947368421, 0.02631578947368421, 0.02631578947368421, 0.02631578947368421, 0.02631578947368421, 0.02631578947368421, 0.02631578947368421, 0.02631578947368421, 0.02631578947368421, 0.02631578947368421, 0.02631578947368421, 0.02631578947368421, 0.02631578947368421, 0.03508771929824561, 0.06140350877192982, 0.16666666666666666], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/EIID-AGA.gap.json b/pfam_gap_rates/EIID-AGA.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..2531bf216341938cf9e7c508c62e422fa2d2e74e
--- /dev/null
+++ b/pfam_gap_rates/EIID-AGA.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/EPL1.gap.json b/pfam_gap_rates/EPL1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d8fb5d4d3e685125fb2d50112212371b0e704686
--- /dev/null
+++ b/pfam_gap_rates/EPL1.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/ERG2_Sigma1R.gap.json b/pfam_gap_rates/ERG2_Sigma1R.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..311672650d1fe3e17fed1583d69ce9c051a4d9d1
--- /dev/null
+++ b/pfam_gap_rates/ERG2_Sigma1R.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/EXS.gap.json b/pfam_gap_rates/EXS.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..098d589b186064cb242466faf8844d9eb801e524
--- /dev/null
+++ b/pfam_gap_rates/EXS.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Eapp_C.gap.json b/pfam_gap_rates/Eapp_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..dfdaead2ed669d394d9e62a09c026992af8a8de2
--- /dev/null
+++ b/pfam_gap_rates/Eapp_C.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/EccE.gap.json b/pfam_gap_rates/EccE.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..8f0f85c018791ca8a82df1ff0b0bae7305af86e2
--- /dev/null
+++ b/pfam_gap_rates/EccE.gap.json
@@ -0,0 +1 @@
+{"family": "EccE", "n_seqs": 106, "length": 116, "gap_rates": [0.5188679245283019, 0.25471698113207547, 0.1792452830188679, 0.10377358490566038, 0.04716981132075472, 0.03773584905660377, 0.03773584905660377, 0.03773584905660377, 0.02830188679245283, 0.02830188679245283, 0.02830188679245283, 0.03773584905660377, 0.03773584905660377, 0.02830188679245283, 0.02830188679245283, 0.02830188679245283, 0.02830188679245283, 0.02830188679245283, 0.02830188679245283, 0.02830188679245283, 0.02830188679245283, 0.02830188679245283, 0.02830188679245283, 0.02830188679245283, 0.02830188679245283, 0.27358490566037735, 0.16037735849056603, 0.16037735849056603, 0.14150943396226415, 0.02830188679245283, 0.009433962264150943, 0.009433962264150943, 0.009433962264150943, 0.009433962264150943, 0.009433962264150943, 0.009433962264150943, 0.009433962264150943, 0.009433962264150943, 0.009433962264150943, 0.009433962264150943, 0.009433962264150943, 0.009433962264150943, 0.009433962264150943, 0.009433962264150943, 0.009433962264150943, 0.009433962264150943, 0.009433962264150943, 0.009433962264150943, 0.009433962264150943, 0.009433962264150943, 0.009433962264150943, 0.009433962264150943, 0.009433962264150943, 0.009433962264150943, 0.009433962264150943, 0.9339622641509434, 0.018867924528301886, 0.018867924528301886, 0.02830188679245283, 0.02830188679245283, 0.018867924528301886, 0.018867924528301886, 0.02830188679245283, 0.02830188679245283, 0.04716981132075472, 0.04716981132075472, 0.04716981132075472, 0.04716981132075472, 0.05660377358490566, 0.05660377358490566, 0.0660377358490566, 0.10377358490566038, 0.1792452830188679, 0.1792452830188679, 0.2358490566037736, 0.20754716981132076, 0.20754716981132076, 0.2169811320754717, 0.2169811320754717, 0.5660377358490566, 0.6132075471698113, 0.7075471698113207, 0.7169811320754716, 0.7358490566037735, 0.8962264150943396, 0.9339622641509434, 0.9433962264150944, 0.9339622641509434, 0.9056603773584906, 0.8301886792452831, 0.7264150943396226, 0.7169811320754716, 0.7075471698113207, 0.5754716981132075, 0.5660377358490566, 0.5188679245283019, 0.5, 0.1509433962264151, 0.11320754716981132, 0.11320754716981132, 0.11320754716981132, 0.11320754716981132, 0.11320754716981132, 0.11320754716981132, 0.12264150943396226, 0.1320754716981132, 0.14150943396226415, 0.14150943396226415, 0.1509433962264151, 0.18867924528301888, 0.19811320754716982, 0.2169811320754717, 0.2169811320754717, 0.2358490566037736, 0.27358490566037735, 0.4811320754716981], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Eco57I.gap.json b/pfam_gap_rates/Eco57I.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..71a9aa14a5c9c51645c7cf715a2c0ee8737a8403
--- /dev/null
+++ b/pfam_gap_rates/Eco57I.gap.json
@@ -0,0 +1 @@
+{"family": "Eco57I", "n_seqs": 535, "length": 123, "gap_rates": [0.8168224299065421, 0.5700934579439252, 0.08971962616822429, 0.0616822429906542, 0.05420560747663551, 0.044859813084112146, 0.011214953271028037, 0.009345794392523364, 0.009345794392523364, 0.009345794392523364, 0.009345794392523364, 0.009345794392523364, 0.009345794392523364, 0.009345794392523364, 0.009345794392523364, 0.009345794392523364, 0.22242990654205608, 0.22429906542056074, 0.2205607476635514, 0.09345794392523364, 0.08224299065420561, 0.09345794392523364, 0.21495327102803738, 0.2130841121495327, 0.12897196261682242, 0.1252336448598131, 0.016822429906542057, 0.23738317757009345, 0.2485981308411215, 0.3663551401869159, 0.5327102803738317, 0.7102803738317757, 0.8485981308411215, 0.9158878504672897, 0.9345794392523364, 0.8803738317757009, 0.7514018691588785, 0.6205607476635514, 0.44299065420560746, 0.33084112149532713, 0.24299065420560748, 0.23551401869158878, 0.011214953271028037, 0.011214953271028037, 0.011214953271028037, 0.011214953271028037, 0.009345794392523364, 0.009345794392523364, 0.009345794392523364, 0.011214953271028037, 0.011214953271028037, 0.009345794392523364, 0.009345794392523364, 0.009345794392523364, 0.009345794392523364, 0.009345794392523364, 0.009345794392523364, 0.009345794392523364, 0.32710280373831774, 0.22990654205607478, 0.018691588785046728, 0.016822429906542057, 0.013084112149532711, 0.016822429906542057, 0.06542056074766354, 0.013084112149532711, 0.011214953271028037, 0.011214953271028037, 0.011214953271028037, 0.011214953271028037, 0.013084112149532711, 0.014953271028037384, 0.016822429906542057, 0.914018691588785, 0.794392523364486, 0.028037383177570093, 0.024299065420560748, 0.024299065420560748, 0.024299065420560748, 0.024299065420560748, 0.024299065420560748, 0.024299065420560748, 0.026168224299065422, 0.028037383177570093, 0.03364485981308411, 0.05046728971962617, 0.04299065420560748, 0.056074766355140186, 0.056074766355140186, 0.0616822429906542, 0.06542056074766354, 0.0691588785046729, 0.0691588785046729, 0.06728971962616823, 0.07289719626168224, 0.07102803738317758, 0.07289719626168224, 0.08037383177570094, 0.08224299065420561, 0.08971962616822429, 0.11214953271028037, 0.14579439252336449, 0.16261682242990655, 0.5644859813084112, 0.18878504672897195, 0.13457943925233645, 0.14392523364485982, 0.17009345794392525, 0.16635514018691588, 0.19065420560747665, 0.21682242990654205, 0.24299065420560748, 0.27850467289719627, 0.28785046728971964, 0.29345794392523367, 0.3102803738317757, 0.3364485981308411, 0.36074766355140186, 0.4261682242990654, 0.4542056074766355, 0.5345794392523364, 0.6299065420560748, 0.7962616822429907], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Elongin_A.gap.json b/pfam_gap_rates/Elongin_A.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d1250d84906bf7b7ec9bc8b129ce1173e8210851
--- /dev/null
+++ b/pfam_gap_rates/Elongin_A.gap.json
@@ -0,0 +1 @@
+{"family": "Elongin_A", "n_seqs": 258, "length": 120, "gap_rates": [0.6007751937984496, 0.26744186046511625, 0.15891472868217055, 0.1124031007751938, 0.08914728682170543, 0.9496124031007752, 0.05813953488372093, 0.03875968992248062, 0.023255813953488372, 0.023255813953488372, 0.01937984496124031, 0.01937984496124031, 0.01937984496124031, 0.01937984496124031, 0.01937984496124031, 0.01937984496124031, 0.01937984496124031, 0.01937984496124031, 0.01937984496124031, 0.7596899224806202, 0.01937984496124031, 0.01937984496124031, 0.01937984496124031, 0.01937984496124031, 0.01937984496124031, 0.01937984496124031, 0.023255813953488372, 0.023255813953488372, 0.011627906976744186, 0.007751937984496124, 0.007751937984496124, 0.007751937984496124, 0.007751937984496124, 0.003875968992248062, 0.023255813953488372, 0.015503875968992248, 0.023255813953488372, 0.8682170542635659, 0.8565891472868217, 0.023255813953488372, 0.015503875968992248, 0.011627906976744186, 0.011627906976744186, 0.011627906976744186, 0.011627906976744186, 0.011627906976744186, 0.011627906976744186, 0.011627906976744186, 0.011627906976744186, 0.011627906976744186, 0.011627906976744186, 0.011627906976744186, 0.011627906976744186, 0.011627906976744186, 0.011627906976744186, 0.011627906976744186, 0.011627906976744186, 0.16279069767441862, 0.027131782945736434, 0.9186046511627907, 0.1511627906976744, 0.06589147286821706, 0.08914728682170543, 0.06589147286821706, 0.17054263565891473, 0.8798449612403101, 0.9224806201550387, 0.9457364341085271, 0.8992248062015504, 0.8449612403100775, 0.47674418604651164, 0.4844961240310077, 0.43410852713178294, 0.41472868217054265, 0.29069767441860467, 0.8488372093023255, 0.8643410852713178, 0.9418604651162791, 0.8488372093023255, 0.8488372093023255, 0.011627906976744186, 0.011627906976744186, 0.011627906976744186, 0.011627906976744186, 0.011627906976744186, 0.015503875968992248, 0.023255813953488372, 0.04263565891472868, 0.046511627906976744, 0.046511627906976744, 0.046511627906976744, 0.046511627906976744, 0.046511627906976744, 0.046511627906976744, 0.046511627906976744, 0.046511627906976744, 0.046511627906976744, 0.046511627906976744, 0.046511627906976744, 0.046511627906976744, 0.06201550387596899, 0.05813953488372093, 0.05813953488372093, 0.05426356589147287, 0.05426356589147287, 0.05813953488372093, 0.06976744186046512, 0.06976744186046512, 0.07751937984496124, 0.08139534883720931, 0.10465116279069768, 0.1511627906976744, 0.1744186046511628, 0.19767441860465115, 0.2131782945736434, 0.24031007751937986, 0.2868217054263566, 0.35271317829457366, 0.49224806201550386, 0.8682170542635659], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Enolase_C.gap.json b/pfam_gap_rates/Enolase_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..8952654cc77dbd01d01a1189e6b59333f5b407fb
--- /dev/null
+++ b/pfam_gap_rates/Enolase_C.gap.json
@@ -0,0 +1 @@
+{"family": "Enolase_C", "n_seqs": 2959, "length": 295, "gap_rates": [0.430888813788442, 0.15106454883406556, 0.09124704291990537, 0.08279824264954376, 0.08144643460628591, 0.07941872254139912, 0.07570125042244001, 0.07434944237918216, 0.0740114903683677, 0.0740114903683677, 0.07367353835755323, 0.07333558634673876, 0.0729976343359243, 0.07333558634673876, 0.0729976343359243, 0.07333558634673876, 0.0740114903683677, 0.07434944237918216, 0.07367353835755323, 0.07333558634673876, 0.0729976343359243, 0.07333558634673876, 0.07130787428185198, 0.07096992227103752, 0.0719837783034809, 0.0719837783034809, 0.06860425819533626, 0.06792835417370734, 0.06928016221696519, 0.07232173031429537, 0.07536329841162555, 0.08043257857384252, 0.07739101047651234, 0.07096992227103752, 0.07130787428185198, 0.06995606623859411, 0.06961811422777965, 0.06928016221696519, 0.06894221020615073, 0.06657654613044947, 0.06657654613044947, 0.06488678607637716, 0.06556269009800608, 0.06522473808719162, 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\ No newline at end of file
diff --git a/pfam_gap_rates/Entericidin.gap.json b/pfam_gap_rates/Entericidin.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a76e68858cc4f71d3b01cfd59b101edc0e916af6
--- /dev/null
+++ b/pfam_gap_rates/Entericidin.gap.json
@@ -0,0 +1 @@
+{"family": "Entericidin", "n_seqs": 230, "length": 21, "gap_rates": [0.1, 0.008695652173913044, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.004347826086956522, 0.008695652173913044, 0.008695652173913044, 0.013043478260869565, 0.02608695652173913, 0.0391304347826087, 0.1, 0.3], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Ependymin.gap.json b/pfam_gap_rates/Ependymin.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..30ddb28a2d369b41c5e68323352e06ef3e3565d3
--- /dev/null
+++ b/pfam_gap_rates/Ependymin.gap.json
@@ -0,0 +1 @@
+{"family": "Ependymin", "n_seqs": 126, "length": 146, "gap_rates": [0.9126984126984127, 0.6507936507936508, 0.48412698412698413, 0.4126984126984127, 0.31746031746031744, 0.25396825396825395, 0.21428571428571427, 0.15079365079365079, 0.10317460317460317, 0.0873015873015873, 0.0873015873015873, 0.0873015873015873, 0.07936507936507936, 0.07936507936507936, 0.9365079365079365, 0.07936507936507936, 0.06349206349206349, 0.047619047619047616, 0.03968253968253968, 0.03968253968253968, 0.03968253968253968, 0.3253968253968254, 0.2857142857142857, 0.03968253968253968, 0.07142857142857142, 0.1111111111111111, 0.05555555555555555, 0.031746031746031744, 0.031746031746031744, 0.031746031746031744, 0.031746031746031744, 0.03968253968253968, 0.03968253968253968, 0.047619047619047616, 0.031746031746031744, 0.023809523809523808, 0.05555555555555555, 0.031746031746031744, 0.031746031746031744, 0.031746031746031744, 0.023809523809523808, 0.031746031746031744, 0.015873015873015872, 0.015873015873015872, 0.015873015873015872, 0.015873015873015872, 0.015873015873015872, 0.007936507936507936, 0.007936507936507936, 0.007936507936507936, 0.007936507936507936, 0.015873015873015872, 0.015873015873015872, 0.007936507936507936, 0.015873015873015872, 0.015873015873015872, 0.20634920634920634, 0.7301587301587301, 0.6666666666666666, 0.4365079365079365, 0.21428571428571427, 0.15079365079365079, 0.11904761904761904, 0.031746031746031744, 0.007936507936507936, 0.007936507936507936, 0.007936507936507936, 0.007936507936507936, 0.007936507936507936, 0.007936507936507936, 0.007936507936507936, 0.007936507936507936, 0.007936507936507936, 0.007936507936507936, 0.007936507936507936, 0.023809523809523808, 0.15079365079365079, 0.2857142857142857, 0.7777777777777778, 0.873015873015873, 0.9444444444444444, 0.8412698412698413, 0.5714285714285714, 0.03968253968253968, 0.031746031746031744, 0.023809523809523808, 0.015873015873015872, 0.015873015873015872, 0.015873015873015872, 0.015873015873015872, 0.015873015873015872, 0.07936507936507936, 0.015873015873015872, 0.015873015873015872, 0.015873015873015872, 0.015873015873015872, 0.015873015873015872, 0.015873015873015872, 0.015873015873015872, 0.023809523809523808, 0.023809523809523808, 0.7380952380952381, 0.873015873015873, 0.9365079365079365, 0.8888888888888888, 0.7936507936507936, 0.7222222222222222, 0.023809523809523808, 0.07142857142857142, 0.07142857142857142, 0.07142857142857142, 0.03968253968253968, 0.6984126984126984, 0.8015873015873016, 0.9126984126984127, 0.9126984126984127, 0.8412698412698413, 0.7380952380952381, 0.6666666666666666, 0.06349206349206349, 0.9365079365079365, 0.14285714285714285, 0.07936507936507936, 0.07936507936507936, 0.09523809523809523, 0.09523809523809523, 0.09523809523809523, 0.09523809523809523, 0.09523809523809523, 0.09523809523809523, 0.09523809523809523, 0.09523809523809523, 0.10317460317460317, 0.1111111111111111, 0.11904761904761904, 0.1349206349206349, 0.12698412698412698, 0.11904761904761904, 0.1111111111111111, 0.1111111111111111, 0.1111111111111111, 0.11904761904761904, 0.11904761904761904, 0.12698412698412698, 0.18253968253968253, 0.18253968253968253], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Erv26.gap.json b/pfam_gap_rates/Erv26.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..4e12ed549b349ae48cbd115d68c4ab6ac847c6e6
--- /dev/null
+++ b/pfam_gap_rates/Erv26.gap.json
@@ -0,0 +1 @@
+{"family": "Erv26", "n_seqs": 217, "length": 229, "gap_rates": [0.5253456221198156, 0.5023041474654378, 0.3317972350230415, 0.3087557603686636, 0.2764976958525346, 0.2534562211981567, 0.2304147465437788, 0.2119815668202765, 0.2073732718894009, 0.20276497695852536, 0.18433179723502305, 0.17972350230414746, 0.17511520737327188, 0.16589861751152074, 0.15668202764976957, 0.16129032258064516, 0.15668202764976957, 0.15207373271889402, 0.15207373271889402, 0.16129032258064516, 0.15207373271889402, 0.14746543778801843, 0.14285714285714285, 0.10599078341013825, 0.10599078341013825, 0.10599078341013825, 0.10138248847926268, 0.10138248847926268, 0.10599078341013825, 0.11059907834101383, 0.10599078341013825, 0.10599078341013825, 0.10599078341013825, 0.0967741935483871, 0.0967741935483871, 0.0967741935483871, 0.0967741935483871, 0.0967741935483871, 0.0967741935483871, 0.09216589861751152, 0.09216589861751152, 0.09216589861751152, 0.09216589861751152, 0.09216589861751152, 0.09216589861751152, 0.09216589861751152, 0.09216589861751152, 0.08294930875576037, 0.07373271889400922, 0.07373271889400922, 0.07373271889400922, 0.07373271889400922, 0.06912442396313365, 0.07834101382488479, 0.06912442396313365, 0.06451612903225806, 0.06451612903225806, 0.06451612903225806, 0.06451612903225806, 0.08294930875576037, 0.08294930875576037, 0.10599078341013825, 0.059907834101382486, 0.05069124423963134, 0.04608294930875576, 0.04608294930875576, 0.04608294930875576, 0.04608294930875576, 0.04608294930875576, 0.04608294930875576, 0.05069124423963134, 0.05069124423963134, 0.05069124423963134, 0.05069124423963134, 0.04608294930875576, 0.04608294930875576, 0.04608294930875576, 0.04608294930875576, 0.04608294930875576, 0.04608294930875576, 0.04608294930875576, 0.04608294930875576, 0.04608294930875576, 0.04608294930875576, 0.8433179723502304, 0.04608294930875576, 0.04608294930875576, 0.04608294930875576, 0.04608294930875576, 0.04608294930875576, 0.055299539170506916, 0.055299539170506916, 0.055299539170506916, 0.055299539170506916, 0.055299539170506916, 0.05069124423963134, 0.05069124423963134, 0.05069124423963134, 0.05069124423963134, 0.05069124423963134, 0.05069124423963134, 0.055299539170506916, 0.05069124423963134, 0.04608294930875576, 0.04608294930875576, 0.04608294930875576, 0.04608294930875576, 0.041474654377880185, 0.041474654377880185, 0.041474654377880185, 0.041474654377880185, 0.041474654377880185, 0.04608294930875576, 0.04608294930875576, 0.03686635944700461, 0.03686635944700461, 0.03686635944700461, 0.05069124423963134, 0.059907834101382486, 0.8341013824884793, 0.880184331797235, 0.9078341013824884, 0.8571428571428571, 0.8341013824884793, 0.46543778801843316, 0.5345622119815668, 0.5023041474654378, 0.48847926267281105, 0.5207373271889401, 0.4930875576036866, 0.5207373271889401, 0.9400921658986175, 0.8202764976958525, 0.5898617511520737, 0.5483870967741935, 0.5299539170506913, 0.8755760368663594, 0.9078341013824884, 0.9447004608294931, 0.9493087557603687, 0.9308755760368663, 0.8940092165898618, 0.8341013824884793, 0.47465437788018433, 0.4930875576036866, 0.511520737327189, 0.5161290322580645, 0.4838709677419355, 0.6175115207373272, 0.9493087557603687, 0.10599078341013825, 0.07834101382488479, 0.07373271889400922, 0.07373271889400922, 0.07373271889400922, 0.06912442396313365, 0.07834101382488479, 0.08294930875576037, 0.06912442396313365, 0.06912442396313365, 0.07834101382488479, 0.0967741935483871, 0.06912442396313365, 0.07834101382488479, 0.06451612903225806, 0.06451612903225806, 0.06451612903225806, 0.06451612903225806, 0.06451612903225806, 0.06451612903225806, 0.06451612903225806, 0.06451612903225806, 0.06451612903225806, 0.06451612903225806, 0.06912442396313365, 0.06912442396313365, 0.06912442396313365, 0.07834101382488479, 0.07834101382488479, 0.07834101382488479, 0.07834101382488479, 0.07834101382488479, 0.07834101382488479, 0.07834101382488479, 0.10599078341013825, 0.12442396313364056, 0.15668202764976957, 0.17511520737327188, 0.18433179723502305, 0.2073732718894009, 0.22119815668202766, 0.2534562211981567, 0.2857142857142857, 0.3317972350230415, 0.3824884792626728, 0.41013824884792627, 0.45161290322580644, 0.5253456221198156, 0.543778801843318, 0.7188940092165899, 0.7142857142857143, 0.7235023041474654, 0.5898617511520737, 0.8894009216589862, 0.9170506912442397, 0.9400921658986175, 0.9493087557603687, 0.9170506912442397, 0.8986175115207373, 0.8525345622119815, 0.4700460829493088, 0.41013824884792627, 0.391705069124424, 0.391705069124424, 0.3870967741935484, 0.391705069124424, 0.391705069124424, 0.4055299539170507, 0.41013824884792627, 0.41013824884792627, 0.5668202764976958, 0.5023041474654378, 0.511520737327189, 0.5345622119815668, 0.5806451612903226, 0.6267281105990783, 0.6451612903225806, 0.7188940092165899, 0.8709677419354839], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Ets.gap.json b/pfam_gap_rates/Ets.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..51aaffdb08980b1768a81764bc704c85c662428f
--- /dev/null
+++ b/pfam_gap_rates/Ets.gap.json
@@ -0,0 +1 @@
+{"family": "Ets", "n_seqs": 1104, "length": 86, "gap_rates": [0.3523550724637681, 0.05615942028985507, 0.051630434782608696, 0.049818840579710144, 0.049818840579710144, 0.04891304347826087, 0.04800724637681159, 0.04800724637681159, 0.04710144927536232, 0.04710144927536232, 0.04710144927536232, 0.043478260869565216, 0.042572463768115944, 0.058876811594202896, 0.6875, 0.04891304347826087, 0.03713768115942029, 0.034420289855072464, 0.034420289855072464, 0.034420289855072464, 0.03351449275362319, 0.03351449275362319, 0.03351449275362319, 0.03351449275362319, 0.030797101449275364, 0.5498188405797102, 0.028079710144927536, 0.025362318840579712, 0.022644927536231884, 0.022644927536231884, 0.021739130434782608, 0.021739130434782608, 0.020833333333333332, 0.9447463768115942, 0.9447463768115942, 0.019927536231884056, 0.017210144927536232, 0.017210144927536232, 0.01358695652173913, 0.01358695652173913, 0.01358695652173913, 0.016304347826086956, 0.01358695652173913, 0.01358695652173913, 0.014492753623188406, 0.01358695652173913, 0.01358695652173913, 0.01177536231884058, 0.01177536231884058, 0.01177536231884058, 0.012681159420289856, 0.01358695652173913, 0.9157608695652174, 0.006340579710144928, 0.005434782608695652, 0.005434782608695652, 0.005434782608695652, 0.005434782608695652, 0.005434782608695652, 0.005434782608695652, 0.005434782608695652, 0.005434782608695652, 0.005434782608695652, 0.007246376811594203, 0.016304347826086956, 0.019021739130434784, 0.021739130434782608, 0.024456521739130436, 0.02717391304347826, 0.030797101449275364, 0.03260869565217391, 0.034420289855072464, 0.034420289855072464, 0.035326086956521736, 0.03894927536231884, 0.04528985507246377, 0.9429347826086957, 0.12681159420289856, 0.05615942028985507, 0.057065217391304345, 0.06159420289855073, 0.06431159420289854, 0.06521739130434782, 0.06884057971014493, 0.0806159420289855, 0.5371376811594203], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/EutN_CcmL.gap.json b/pfam_gap_rates/EutN_CcmL.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..dcec1043e7e2fc77a1f6dd811ad73f9c7235c200
--- /dev/null
+++ b/pfam_gap_rates/EutN_CcmL.gap.json
@@ -0,0 +1 @@
+{"family": "EutN_CcmL", "n_seqs": 408, "length": 90, "gap_rates": [0.04656862745098039, 0.04656862745098039, 0.0392156862745098, 0.03431372549019608, 0.031862745098039214, 0.031862745098039214, 0.02696078431372549, 0.024509803921568627, 0.024509803921568627, 0.024509803921568627, 0.0196078431372549, 0.0196078431372549, 0.0196078431372549, 0.0196078431372549, 0.01715686274509804, 0.01715686274509804, 0.01715686274509804, 0.01715686274509804, 0.00980392156862745, 0.00980392156862745, 0.007352941176470588, 0.007352941176470588, 0.004901960784313725, 0.004901960784313725, 0.004901960784313725, 0.004901960784313725, 0.004901960784313725, 0.004901960784313725, 0.004901960784313725, 0.004901960784313725, 0.9240196078431373, 0.9264705882352942, 0.9313725490196079, 0.9264705882352942, 0.9166666666666666, 0.2818627450980392, 0.2696078431372549, 0.18872549019607843, 0.1715686274509804, 0.1642156862745098, 0.13480392156862744, 0.04656862745098039, 0.9411764705882353, 0.0024509803921568627, 0.0024509803921568627, 0.0024509803921568627, 0.0024509803921568627, 0.0024509803921568627, 0.0024509803921568627, 0.0024509803921568627, 0.0024509803921568627, 0.0024509803921568627, 0.0024509803921568627, 0.0024509803921568627, 0.0024509803921568627, 0.0024509803921568627, 0.0024509803921568627, 0.0024509803921568627, 0.0024509803921568627, 0.0024509803921568627, 0.0, 0.0, 0.0, 0.0, 0.0, 0.9215686274509803, 0.0024509803921568627, 0.004901960784313725, 0.007352941176470588, 0.00980392156862745, 0.00980392156862745, 0.012254901960784314, 0.031862745098039214, 0.014705882352941176, 0.056372549019607844, 0.031862745098039214, 0.014705882352941176, 0.014705882352941176, 0.014705882352941176, 0.014705882352941176, 0.014705882352941176, 0.014705882352941176, 0.014705882352941176, 0.014705882352941176, 0.014705882352941176, 0.014705882352941176, 0.014705882352941176, 0.014705882352941176, 0.0196078431372549, 0.024509803921568627], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/ExoD.gap.json b/pfam_gap_rates/ExoD.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e6988830a1bd7559dcd18324ffac7f0903392062
--- /dev/null
+++ b/pfam_gap_rates/ExoD.gap.json
@@ -0,0 +1 @@
+{"family": "ExoD", "n_seqs": 292, "length": 186, "gap_rates": [0.6883561643835616, 0.3767123287671233, 0.23972602739726026, 0.1815068493150685, 0.1267123287671233, 0.09931506849315068, 0.08561643835616438, 0.0821917808219178, 0.0821917808219178, 0.07534246575342465, 0.06506849315068493, 0.0547945205479452, 0.08561643835616438, 0.04452054794520548, 0.7431506849315068, 0.0547945205479452, 0.0273972602739726, 0.017123287671232876, 0.017123287671232876, 0.017123287671232876, 0.0136986301369863, 0.0136986301369863, 0.0136986301369863, 0.0136986301369863, 0.0136986301369863, 0.0136986301369863, 0.0136986301369863, 0.0136986301369863, 0.0136986301369863, 0.0136986301369863, 0.0136986301369863, 0.0136986301369863, 0.0136986301369863, 0.010273972602739725, 0.00684931506849315, 0.00684931506849315, 0.00684931506849315, 0.00684931506849315, 0.00684931506849315, 0.00684931506849315, 0.00684931506849315, 0.00684931506849315, 0.00684931506849315, 0.00684931506849315, 0.00684931506849315, 0.010273972602739725, 0.030821917808219176, 0.0547945205479452, 0.3767123287671233, 0.6678082191780822, 0.0410958904109589, 0.010273972602739725, 0.02054794520547945, 0.0136986301369863, 0.010273972602739725, 0.00684931506849315, 0.00684931506849315, 0.00684931506849315, 0.00684931506849315, 0.00684931506849315, 0.00684931506849315, 0.00684931506849315, 0.00684931506849315, 0.00684931506849315, 0.00684931506849315, 0.00684931506849315, 0.00684931506849315, 0.00684931506849315, 0.00684931506849315, 0.00684931506849315, 0.07876712328767123, 0.00684931506849315, 0.00684931506849315, 0.11643835616438356, 0.00684931506849315, 0.00684931506849315, 0.00684931506849315, 0.00684931506849315, 0.00684931506849315, 0.00684931506849315, 0.00684931506849315, 0.00684931506849315, 0.00684931506849315, 0.00684931506849315, 0.003424657534246575, 0.003424657534246575, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.003424657534246575, 0.0, 0.0, 0.6746575342465754, 0.003424657534246575, 0.003424657534246575, 0.0, 0.0, 0.0, 0.00684931506849315, 0.003424657534246575, 0.0, 0.0, 0.18493150684931506, 0.1780821917808219, 0.010273972602739725, 0.003424657534246575, 0.003424657534246575, 0.003424657534246575, 0.003424657534246575, 0.00684931506849315, 0.010273972602739725, 0.00684931506849315, 0.00684931506849315, 0.010273972602739725, 0.010273972602739725, 0.0, 0.6095890410958904, 0.839041095890411, 0.708904109589041, 0.5993150684931506, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.003424657534246575, 0.0136986301369863, 0.0273972602739726, 0.07534246575342465, 0.14383561643835616, 0.410958904109589], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/F-actin_cap_A.gap.json b/pfam_gap_rates/F-actin_cap_A.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..64856f78e98d623af2e1082570788f7ca9e0b245
--- /dev/null
+++ b/pfam_gap_rates/F-actin_cap_A.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/FAD_binding_7.gap.json b/pfam_gap_rates/FAD_binding_7.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..73a090ddef26ded0235cf594f7759ea52706bba3
--- /dev/null
+++ b/pfam_gap_rates/FAD_binding_7.gap.json
@@ -0,0 +1 @@
+{"family": "FAD_binding_7", "n_seqs": 1898, "length": 221, "gap_rates": [0.3925184404636459, 0.35721812434141204, 0.1417281348788198, 0.08377239199157008, 0.06111696522655427, 0.05637513171759747, 0.05426765015806112, 0.052160168598524764, 0.052160168598524764, 0.051633298208640675, 0.051106427818756586, 0.051633298208640675, 0.0505795574288725, 0.0505795574288725, 0.05005268703898841, 0.05005268703898841, 0.05005268703898841, 0.04899894625922023, 0.04952581664910432, 0.04952581664910432, 0.04952581664910432, 0.136986301369863, 0.8371970495258166, 0.09694415173867228, 0.07007376185458378, 0.06585879873551106, 0.05637513171759747, 0.052160168598524764, 0.051106427818756586, 0.05268703898840885, 0.05374077976817703, 0.05374077976817703, 0.04847207586933614, 0.8566912539515279, 0.05268703898840885, 0.04847207586933614, 0.0458377239199157, 0.08324552160168598, 0.08324552160168598, 0.08008429926238145, 0.10800842992623814, 0.10432033719704953, 0.6917808219178082, 0.8956796628029505, 0.8614330874604847, 0.04267650158061117, 0.9330874604847208, 0.9330874604847208, 0.934668071654373, 0.9420442571127503, 0.9420442571127503, 0.9457323498419389, 0.946786090621707, 0.9436248682824026, 0.9420442571127503, 0.940463645943098, 0.934141201264489, 0.9330874604847208, 0.9330874604847208, 0.032665964172813484, 0.02845100105374078, 0.02792413066385669, 0.0273972602739726, 0.026870389884088516, 0.026870389884088516, 0.0273972602739726, 0.02845100105374078, 0.02792413066385669, 0.02845100105374078, 0.0273972602739726, 0.026870389884088516, 0.026870389884088516, 0.026870389884088516, 0.026870389884088516, 0.025816649104320338, 0.026343519494204427, 0.02107481559536354, 0.02054794520547945, 0.019494204425711276, 0.018967334035827187, 0.019494204425711276, 0.020021074815595362, 0.019494204425711276, 0.019494204425711276, 0.02054794520547945, 0.02054794520547945, 0.020021074815595362, 0.020021074815595362, 0.02054794520547945, 0.02054794520547945, 0.020021074815595362, 0.019494204425711276, 0.020021074815595362, 0.022128556375131718, 0.025816649104320338, 0.026343519494204427, 0.0273972602739726, 0.0273972602739726, 0.02792413066385669, 0.026870389884088516, 0.8756585879873551, 0.02792413066385669, 0.02792413066385669, 0.0273972602739726, 0.029504741833508957, 0.029504741833508957, 0.029504741833508957, 0.029504741833508957, 0.02897787144362487, 0.02897787144362487, 0.030031612223393046, 0.02792413066385669, 0.02845100105374078, 0.029504741833508957, 0.030558482613277135, 0.03108535300316122, 0.03108535300316122, 0.03108535300316122, 0.030558482613277135, 0.030031612223393046, 0.030558482613277135, 0.03635405690200211, 0.037407797681770286, 0.040042149631190724, 0.04320337197049526, 0.04373024236037935, 0.04373024236037935, 0.04373024236037935, 0.04373024236037935, 0.044783983140147525, 0.04373024236037935, 0.051633298208640675, 0.052160168598524764, 0.052160168598524764, 0.05268703898840885, 0.9378292939936775, 0.06691253951527924, 0.07218124341412013, 0.06111696522655427, 0.06269757639620653, 0.07534246575342465, 0.07270811380400422, 0.23814541622760801, 0.15700737618545837, 0.2528977871443625, 0.09009483667017913, 0.08587987355110643, 0.08482613277133826, 0.08693361433087461, 0.09062170706006323, 0.09378292939936776, 0.09430979978925184, 0.0964172813487882, 0.09905163329820864, 0.10273972602739725, 0.1053740779768177, 0.10484720758693361, 0.10484720758693361, 0.10642781875658588, 0.1101159114857745, 0.1095890410958904, 0.11222339304531086, 0.10748155953635406, 0.10853530031612224, 0.10800842992623814, 0.1095890410958904, 0.11064278187565858, 0.12592202318229714, 0.13435194942044257, 0.1422550052687039, 0.14910432033719706, 0.1517386722866175, 0.1559536354056902, 0.19915700737618547, 0.21338250790305585, 0.22075869336143308, 0.2297154899894626, 0.23234984193888303, 0.23234984193888303, 0.23234984193888303, 0.2428872497365648, 0.24394099051633297, 0.23814541622760801, 0.27766069546891464, 0.2671232876712329, 0.30084299262381453, 0.3292939936775553, 0.4199157007376185, 0.48261327713382507, 0.5495258166491043, 0.5869336143308747, 0.5937829293993677, 0.5827186512118019, 0.5368809272918862, 0.44257112750263433, 0.3761854583772392, 0.3119072708113804, 0.2945205479452055, 0.2328767123287671, 0.21654373024236037, 0.21232876712328766, 0.20864067439409906, 0.20495258166491043, 0.20600632244467862, 0.21180189673340358, 0.22128556375131717, 0.22813487881981032, 0.23234984193888303, 0.2386722866174921, 0.2581664910432034, 0.2671232876712329, 0.2718651211801897, 0.27291886195995785, 0.2792413066385669, 0.28609062170706007, 0.29610115911485774, 0.30927291886195996, 0.3303477344573235, 0.3656480505795574, 0.5173867228661749, 0.9383561643835616], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/FAM76.gap.json b/pfam_gap_rates/FAM76.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..8c55b7d01efa5e772695a464c46886a34391e7eb
--- /dev/null
+++ b/pfam_gap_rates/FAM76.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/FAR1.gap.json b/pfam_gap_rates/FAR1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..095e127be990566e7368dc27eaecc73254adc6d5
--- /dev/null
+++ b/pfam_gap_rates/FAR1.gap.json
@@ -0,0 +1 @@
+{"family": "FAR1", "n_seqs": 1389, "length": 109, "gap_rates": [0.5961123110151187, 0.3347732181425486, 0.2706983441324694, 0.24550035997120231, 0.2059035277177826, 0.18934485241180707, 0.15550755939524838, 0.14542836573074155, 0.1375089992800576, 0.1259899208063355, 0.12239020878329733, 0.12095032397408208, 0.11663066954643629, 0.11447084233261338, 0.11159107271418287, 0.11159107271418287, 0.1101511879049676, 0.10511159107271419, 0.10223182145428365, 0.10151187904967603, 0.09863210943124551, 0.09575233981281497, 0.9193664506839453, 0.9481641468682506, 0.9366450683945284, 0.8898488120950324, 0.37365010799136067, 0.2339812814974802, 0.14830813534917206, 0.15046796256299497, 0.23110151187904968, 0.1259899208063355, 0.08423326133909287, 0.03599712023038157, 0.032397408207343416, 0.03023758099352052, 0.029517638588912886, 0.028797696184305256, 0.028077753779697623, 0.028797696184305256, 0.028797696184305256, 0.03095752339812815, 0.03311735061195104, 0.04103671706263499, 0.04967602591792657, 0.05327573794096472, 0.06695464362850972, 0.07487401007919367, 0.08063354931605471, 0.08855291576673865, 0.09071274298056156, 0.8185745140388769, 0.8790496760259179, 0.9092872570194385, 0.9236861051115911, 0.9366450683945284, 0.9388048956083513, 0.9352051835853131, 0.9215262778977682, 0.8876889848812095, 0.8610511159107271, 0.7768178545716342, 0.6580273578113751, 0.5176385889128869, 0.4175665946724262, 0.320374370050396, 0.2735781137508999, 0.20518358531317496, 0.1418286537077034, 0.13606911447084233, 0.13462922966162708, 0.12670986321094313, 0.0964722822174226, 0.08207343412526998, 0.07847372210223182, 0.07775377969762419, 0.0755939524838013, 0.06623470122390208, 0.06983441324694024, 0.07055435565154787, 0.07271418286537078, 0.07127429805615551, 0.07271418286537078, 0.0755939524838013, 0.07703383729301656, 0.07919366450683946, 0.08423326133909287, 0.2570194384449244, 0.9366450683945284, 0.693304535637149, 0.09143268538516919, 0.09215262778977681, 0.09287257019438445, 0.09359251259899208, 0.09575233981281497, 0.09719222462203024, 0.09935205183585313, 0.10151187904967603, 0.1029517638588913, 0.10367170626349892, 0.10583153347732181, 0.10511159107271419, 0.10583153347732181, 0.1079913606911447, 0.10943124550035997, 0.128869690424766, 0.22534197264218864, 0.3369330453563715, 0.7904967602591793], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/FAST_2.gap.json b/pfam_gap_rates/FAST_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d4c9bc1286dc9a75d6d1eb895ae34c15977ffbf7
--- /dev/null
+++ b/pfam_gap_rates/FAST_2.gap.json
@@ -0,0 +1 @@
+{"family": "FAST_2", "n_seqs": 143, "length": 96, "gap_rates": [0.6363636363636364, 0.27972027972027974, 0.1258741258741259, 0.08391608391608392, 0.06993006993006994, 0.06993006993006994, 0.06993006993006994, 0.06993006993006994, 0.06993006993006994, 0.06993006993006994, 0.07692307692307693, 0.06993006993006994, 0.06993006993006994, 0.06993006993006994, 0.09090909090909091, 0.07692307692307693, 0.06293706293706294, 0.06993006993006994, 0.07692307692307693, 0.06993006993006994, 0.07692307692307693, 0.06293706293706294, 0.06293706293706294, 0.06293706293706294, 0.06293706293706294, 0.06293706293706294, 0.06293706293706294, 0.0979020979020979, 0.09090909090909091, 0.06293706293706294, 0.16783216783216784, 0.3146853146853147, 0.2727272727272727, 0.15384615384615385, 0.09090909090909091, 0.09090909090909091, 0.08391608391608392, 0.09090909090909091, 0.15384615384615385, 0.32167832167832167, 0.3006993006993007, 0.2517482517482518, 0.6083916083916084, 0.9300699300699301, 0.9370629370629371, 0.9440559440559441, 0.9370629370629371, 0.7972027972027972, 0.6083916083916084, 0.03496503496503497, 0.03496503496503497, 0.02097902097902098, 0.02097902097902098, 0.02097902097902098, 0.006993006993006993, 0.006993006993006993, 0.006993006993006993, 0.013986013986013986, 0.006993006993006993, 0.006993006993006993, 0.006993006993006993, 0.006993006993006993, 0.006993006993006993, 0.006993006993006993, 0.006993006993006993, 0.013986013986013986, 0.013986013986013986, 0.006993006993006993, 0.14685314685314685, 0.006993006993006993, 0.006993006993006993, 0.006993006993006993, 0.006993006993006993, 0.006993006993006993, 0.006993006993006993, 0.006993006993006993, 0.006993006993006993, 0.006993006993006993, 0.006993006993006993, 0.006993006993006993, 0.006993006993006993, 0.02097902097902098, 0.055944055944055944, 0.06293706293706294, 0.06293706293706294, 0.06293706293706294, 0.06993006993006994, 0.07692307692307693, 0.08391608391608392, 0.11188811188811189, 0.11188811188811189, 0.11888111888111888, 0.13286713286713286, 0.16083916083916083, 0.1958041958041958, 0.34265734265734266], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/FBA_1.gap.json b/pfam_gap_rates/FBA_1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..0182b38a9b07ea63e94646084a1185e5740b02f4
--- /dev/null
+++ b/pfam_gap_rates/FBA_1.gap.json
@@ -0,0 +1 @@
+{"family": "FBA_1", "n_seqs": 643, "length": 203, "gap_rates": [0.6205287713841369, 0.3965785381026439, 0.2737169517884914, 0.14463452566096424, 0.1104199066874028, 0.08709175738724728, 0.08087091757387248, 0.07465007776049767, 0.06842923794712286, 0.06531881804043546, 0.06531881804043546, 0.060653188180404355, 0.05598755832037325, 0.06220839813374806, 0.06376360808709176, 0.06998444790046657, 0.07776049766718507, 0.13530326594090203, 0.18195956454121306, 0.27682737169517885, 0.39813374805598756, 0.7620528771384136, 0.8506998444790047, 0.9144634525660964, 0.9331259720062208, 0.9486780715396579, 0.9222395023328149, 0.8942457231726283, 0.8180404354587869, 0.6111975116640747, 0.07465007776049767, 0.024883359253499222, 0.02332814930015552, 0.02177293934681182, 0.02177293934681182, 0.02021772939346812, 0.02021772939346812, 0.02021772939346812, 0.02021772939346812, 0.01866251944012442, 0.017107309486780714, 0.017107309486780714, 0.6391912908242613, 0.041990668740279936, 0.03265940902021773, 0.01866251944012442, 0.02177293934681182, 0.024883359253499222, 0.02021772939346812, 0.01866251944012442, 0.017107309486780714, 0.017107309486780714, 0.015552099533437015, 0.8211508553654744, 0.9315707620528771, 0.880248833592535, 0.7013996889580093, 0.39035769828926903, 0.15241057542768274, 0.07465007776049767, 0.04354587869362364, 0.02332814930015552, 0.02177293934681182, 0.02177293934681182, 0.02177293934681182, 0.20684292379471228, 0.15241057542768274, 0.07309486780715396, 0.09797822706065319, 0.895800933125972, 0.08242612752721618, 0.09175738724727839, 0.04665629860031104, 0.02177293934681182, 0.02021772939346812, 0.02177293934681182, 0.024883359253499222, 0.09486780715396578, 0.15241057542768274, 0.8880248833592534, 0.9284603421461898, 0.8538102643856921, 0.08087091757387248, 0.06687402799377916, 0.08398133748055987, 0.1057542768273717, 0.19129082426127528, 0.1166407465007776, 0.926905132192846, 0.8911353032659409, 0.03421461897356143, 0.02332814930015552, 0.02332814930015552, 0.024883359253499222, 0.026438569206842923, 0.026438569206842923, 0.024883359253499222, 0.2208398133748056, 0.9300155520995335, 0.29237947122861585, 0.18351477449455678, 0.25194401244167963, 0.28304821150855364, 0.9206842923794712, 0.6345256609642301, 0.06220839813374806, 0.05443234836702955, 0.038880248833592534, 0.038880248833592534, 0.038880248833592534, 0.041990668740279936, 0.041990668740279936, 0.04510108864696734, 0.08553654743390357, 0.06998444790046657, 0.07931570762052877, 0.9004665629860031, 0.12441679626749612, 0.12597200622083982, 0.13530326594090203, 0.15707620528771385, 0.208398133748056, 0.2255054432348367, 0.24883359253499224, 0.30793157076205285, 0.35303265940902023, 0.41368584758942456, 0.5256609642301711, 0.5147744945567652, 0.7807153965785381, 0.9097978227060654, 0.9440124416796267, 0.9393468118195957, 0.8429237947122862, 0.7433903576982893, 0.4214618973561431, 0.39813374805598756, 0.39346811819595645, 0.3965785381026439, 0.4059097978227061, 0.4105754276827372, 0.416796267496112, 0.4230171073094868, 0.4774494556765163, 0.4867807153965785, 0.4572317262830482, 0.463452566096423, 0.4727838258164852, 0.47900466562986005, 0.49611197511664074, 0.5147744945567652, 0.5241057542768274, 0.5381026438569206, 0.5707620528771384, 0.5894245723172629, 0.6391912908242613, 0.6780715396578538, 0.7651632970451011, 0.8180404354587869, 0.911353032659409, 0.9362363919129082, 0.8864696734059098, 0.8195956454121306, 0.7060653188180405, 0.6951788491446346, 0.6951788491446346, 0.6982892690513219, 0.6982892690513219, 0.6998444790046656, 0.7122861586314152, 0.9440124416796267, 0.71850699844479, 0.71850699844479, 0.7247278382581649, 0.7231726283048211, 0.7231726283048211, 0.7262830482115086, 0.7387247278382582, 0.7402799377916018, 0.7558320373250389, 0.7807153965785381, 0.9315707620528771, 0.9486780715396579, 0.9253499222395023, 0.7962674961119751, 0.8118195956454122, 0.807153965785381, 0.7900466562986003, 0.9129082426127527, 0.8740279937791602, 0.8149300155520995, 0.7853810264385692, 0.7807153965785381, 0.7791601866251944, 0.7791601866251944, 0.7791601866251944, 0.7822706065318819, 0.942457231726283, 0.7822706065318819, 0.7822706065318819, 0.7838258164852255, 0.7900466562986003, 0.80248833592535], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/FBA_2.gap.json b/pfam_gap_rates/FBA_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..7d04a60006c4cd340f8eb0b67cfa1aee02e8dd40
--- /dev/null
+++ b/pfam_gap_rates/FBA_2.gap.json
@@ -0,0 +1 @@
+{"family": "FBA_2", "n_seqs": 188, "length": 71, "gap_rates": [0.9308510638297872, 0.6702127659574468, 0.48404255319148937, 0.40425531914893614, 0.35638297872340424, 0.31382978723404253, 0.2712765957446808, 0.2393617021276596, 0.18085106382978725, 0.1702127659574468, 0.1595744680851064, 0.09574468085106383, 0.09042553191489362, 0.09042553191489362, 0.13829787234042554, 0.18085106382978725, 0.9042553191489362, 0.2872340425531915, 0.9202127659574468, 0.8617021276595744, 0.3776595744680851, 0.11702127659574468, 0.09042553191489362, 0.03723404255319149, 0.026595744680851064, 0.02127659574468085, 0.02127659574468085, 0.015957446808510637, 0.02127659574468085, 0.015957446808510637, 0.015957446808510637, 0.010638297872340425, 0.010638297872340425, 0.010638297872340425, 0.005319148936170213, 0.010638297872340425, 0.010638297872340425, 0.005319148936170213, 0.05851063829787234, 0.06914893617021277, 0.16489361702127658, 0.05319148936170213, 0.031914893617021274, 0.8723404255319149, 0.010638297872340425, 0.015957446808510637, 0.005319148936170213, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.005319148936170213, 0.005319148936170213, 0.005319148936170213, 0.010638297872340425, 0.02127659574468085, 0.031914893617021274, 0.9308510638297872, 0.031914893617021274, 0.047872340425531915, 0.05319148936170213, 0.05319148936170213, 0.0851063829787234, 0.11170212765957446, 0.14361702127659576, 0.2712765957446808, 0.48936170212765956], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/FCSD-flav_bind.gap.json b/pfam_gap_rates/FCSD-flav_bind.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b452ce2780d06a7ade712e50cfcd4138fb92d68a
--- /dev/null
+++ b/pfam_gap_rates/FCSD-flav_bind.gap.json
@@ -0,0 +1 @@
+{"family": "FCSD-flav_bind", "n_seqs": 192, "length": 72, "gap_rates": [0.7447916666666666, 0.4010416666666667, 0.171875, 0.11458333333333333, 0.06770833333333333, 0.036458333333333336, 0.026041666666666668, 0.010416666666666666, 0.010416666666666666, 0.010416666666666666, 0.010416666666666666, 0.010416666666666666, 0.010416666666666666, 0.005208333333333333, 0.005208333333333333, 0.005208333333333333, 0.005208333333333333, 0.005208333333333333, 0.005208333333333333, 0.005208333333333333, 0.005208333333333333, 0.005208333333333333, 0.005208333333333333, 0.005208333333333333, 0.005208333333333333, 0.005208333333333333, 0.005208333333333333, 0.6145833333333334, 0.5729166666666666, 0.026041666666666668, 0.005208333333333333, 0.005208333333333333, 0.005208333333333333, 0.005208333333333333, 0.005208333333333333, 0.005208333333333333, 0.005208333333333333, 0.2708333333333333, 0.265625, 0.125, 0.036458333333333336, 0.03125, 0.020833333333333332, 0.020833333333333332, 0.015625, 0.010416666666666666, 0.0, 0.0, 0.328125, 0.3229166666666667, 0.3177083333333333, 0.3177083333333333, 0.3020833333333333, 0.0, 0.0, 0.005208333333333333, 0.005208333333333333, 0.005208333333333333, 0.005208333333333333, 0.005208333333333333, 0.005208333333333333, 0.010416666666666666, 0.010416666666666666, 0.010416666666666666, 0.010416666666666666, 0.010416666666666666, 0.010416666666666666, 0.010416666666666666, 0.010416666666666666, 0.010416666666666666, 0.015625, 0.08854166666666667], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/FERM_N.gap.json b/pfam_gap_rates/FERM_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..6f0ebbadd4dee4c734fe13cea20ef5e480f34cc8
--- /dev/null
+++ b/pfam_gap_rates/FERM_N.gap.json
@@ -0,0 +1 @@
+{"family": "FERM_N", "n_seqs": 1368, "length": 101, "gap_rates": [0.34576023391812866, 0.2565789473684211, 0.2185672514619883, 0.19005847953216373, 0.16885964912280702, 0.15716374269005848, 0.1440058479532164, 0.2324561403508772, 0.11842105263157894, 0.1118421052631579, 0.1023391812865497, 0.09722222222222222, 0.08771929824561403, 0.07163742690058479, 0.0577485380116959, 0.03728070175438596, 0.03216374269005848, 0.02412280701754386, 0.016812865497076022, 0.016812865497076022, 0.016812865497076022, 0.016812865497076022, 0.016812865497076022, 0.014619883040935672, 0.010964912280701754, 0.005116959064327485, 0.0043859649122807015, 0.0043859649122807015, 0.003654970760233918, 0.003654970760233918, 0.0043859649122807015, 0.005116959064327485, 0.0029239766081871343, 0.0029239766081871343, 0.0021929824561403508, 0.0021929824561403508, 0.0029239766081871343, 0.0029239766081871343, 0.0029239766081871343, 0.0029239766081871343, 0.003654970760233918, 0.006578947368421052, 0.8991228070175439, 0.939327485380117, 0.8567251461988304, 0.7638888888888888, 0.16301169590643275, 0.046052631578947366, 0.0533625730994152, 0.035818713450292396, 0.9422514619883041, 0.9495614035087719, 0.9269005847953217, 0.0402046783625731, 0.059941520467836254, 0.03728070175438596, 0.8845029239766082, 0.8925438596491229, 0.8991228070175439, 0.9027777777777778, 0.9071637426900585, 0.9071637426900585, 0.908625730994152, 0.9100877192982456, 0.9137426900584795, 0.9137426900584795, 0.9152046783625731, 0.9159356725146199, 0.9166666666666666, 0.9203216374269005, 0.9232456140350878, 0.9488304093567251, 0.9217836257309941, 0.9166666666666666, 0.9166666666666666, 0.9159356725146199, 0.9137426900584795, 0.9137426900584795, 0.9122807017543859, 0.9093567251461988, 0.908625730994152, 0.9071637426900585, 0.9035087719298246, 0.9013157894736842, 0.8947368421052632, 0.8852339181286549, 0.8845029239766082, 0.039473684210526314, 0.039473684210526314, 0.04093567251461988, 0.04312865497076023, 0.043859649122807015, 0.043859649122807015, 0.04678362573099415, 0.054093567251461985, 0.0577485380116959, 0.07456140350877193, 0.09283625730994152, 0.125, 0.20614035087719298, 0.47733918128654973], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/FEZ.gap.json b/pfam_gap_rates/FEZ.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..3a9afa8958ef6d0de084cebe08c31ba257ff447e
--- /dev/null
+++ b/pfam_gap_rates/FEZ.gap.json
@@ -0,0 +1 @@
+{"family": "FEZ", "n_seqs": 131, "length": 288, "gap_rates": [0.4732824427480916, 0.46564885496183206, 0.4580152671755725, 0.45038167938931295, 0.44274809160305345, 0.44274809160305345, 0.44274809160305345, 0.4198473282442748, 0.4122137404580153, 0.4122137404580153, 0.40458015267175573, 0.3893129770992366, 0.3893129770992366, 0.3893129770992366, 0.3893129770992366, 0.3893129770992366, 0.3893129770992366, 0.3969465648854962, 0.3893129770992366, 0.3893129770992366, 0.3893129770992366, 0.3893129770992366, 0.3893129770992366, 0.3893129770992366, 0.3893129770992366, 0.3893129770992366, 0.3893129770992366, 0.3893129770992366, 0.3893129770992366, 0.3893129770992366, 0.8778625954198473, 0.8778625954198473, 0.8778625954198473, 0.8702290076335878, 0.3893129770992366, 0.3893129770992366, 0.3893129770992366, 0.3969465648854962, 0.3969465648854962, 0.3969465648854962, 0.3969465648854962, 0.3893129770992366, 0.3511450381679389, 0.3511450381679389, 0.3435114503816794, 0.3282442748091603, 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\ No newline at end of file
diff --git a/pfam_gap_rates/FHIPEP.gap.json b/pfam_gap_rates/FHIPEP.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b632821534685012b7d10509f195e00275ea85de
--- /dev/null
+++ b/pfam_gap_rates/FHIPEP.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/FMN_red.gap.json b/pfam_gap_rates/FMN_red.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..29c48d0b803cdcb74dab05acfd0e33dde89514ac
--- /dev/null
+++ b/pfam_gap_rates/FMN_red.gap.json
@@ -0,0 +1 @@
+{"family": "FMN_red", "n_seqs": 5000, "length": 172, "gap_rates": [0.6394, 0.3266, 0.2426, 0.2206, 0.2094, 0.2058, 0.2034, 0.2026, 0.1972, 0.2062, 0.2378, 0.2452, 0.212, 0.148, 0.142, 0.1352, 0.1092, 0.0946, 0.0886, 0.0868, 0.0856, 0.0844, 0.0836, 0.083, 0.082, 0.0826, 0.0826, 0.126, 0.1294, 0.2558, 0.9074, 0.7686, 0.1316, 0.101, 0.0824, 0.0786, 0.077, 0.076, 0.075, 0.0768, 0.0762, 0.0756, 0.0766, 0.243, 0.6226, 0.3576, 0.0974, 0.0842, 0.5808, 0.7492, 0.8138, 0.6462, 0.569, 0.1502, 0.1224, 0.111, 0.1938, 0.1358, 0.1468, 0.449, 0.5288, 0.4106, 0.8144, 0.9184, 0.883, 0.7702, 0.2888, 0.1618, 0.0724, 0.068, 0.063, 0.0614, 0.059, 0.0522, 0.05, 0.052, 0.0434, 0.0222, 0.0154, 0.0104, 0.0094, 0.0086, 0.0086, 0.0086, 0.0086, 0.0086, 0.0088, 0.0078, 0.008, 0.0082, 0.0074, 0.008, 0.008, 0.0086, 0.0094, 0.0082, 0.0082, 0.008, 0.0078, 0.0084, 0.008, 0.0082, 0.008, 0.0082, 0.008, 0.0084, 0.0084, 0.0088, 0.118, 0.3346, 0.769, 0.841, 0.8984, 0.9362, 0.8708, 0.8224, 0.692, 0.3552, 0.305, 0.2802, 0.0574, 0.0544, 0.0538, 0.0544, 0.0572, 0.0592, 0.059, 0.0612, 0.062, 0.0648, 0.0662, 0.0682, 0.1164, 0.0804, 0.0854, 0.198, 0.1588, 0.2868, 0.1584, 0.1384, 0.1416, 0.153, 0.1534, 0.1564, 0.162, 0.1772, 0.1906, 0.196, 0.1996, 0.2048, 0.2094, 0.2126, 0.2162, 0.8526, 0.2324, 0.2354, 0.241, 0.2474, 0.2576, 0.2692, 0.283, 0.308, 0.367, 0.6472, 0.4992, 0.526, 0.5652, 0.6104, 0.6772, 0.7424, 0.8304, 0.9394], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/FNIP_M.gap.json b/pfam_gap_rates/FNIP_M.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..27d9dd01690f7c1d6cfdf45d568c8e77d79faa26
--- /dev/null
+++ b/pfam_gap_rates/FNIP_M.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/FPL.gap.json b/pfam_gap_rates/FPL.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..49aedd06caeb40f80d32a733eb4579e580b11b04
--- /dev/null
+++ b/pfam_gap_rates/FPL.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/FRG1.gap.json b/pfam_gap_rates/FRG1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..0a165d4452dbc09f9f1f6f0d6c1e07d50203fbb8
--- /dev/null
+++ b/pfam_gap_rates/FRG1.gap.json
@@ -0,0 +1 @@
+{"family": "FRG1", "n_seqs": 222, "length": 220, "gap_rates": [0.7972972972972973, 0.5540540540540541, 0.46396396396396394, 0.36036036036036034, 0.35585585585585583, 0.34684684684684686, 0.33783783783783783, 0.33783783783783783, 0.33783783783783783, 0.33783783783783783, 0.3333333333333333, 0.3333333333333333, 0.32882882882882886, 0.32432432432432434, 0.3153153153153153, 0.3153153153153153, 0.3108108108108108, 0.3063063063063063, 0.3063063063063063, 0.2972972972972973, 0.5855855855855856, 0.5315315315315315, 0.47297297297297297, 0.45495495495495497, 0.4144144144144144, 0.4009009009009009, 0.0990990990990991, 0.09009009009009009, 0.09009009009009009, 0.09009009009009009, 0.09009009009009009, 0.09009009009009009, 0.09009009009009009, 0.09009009009009009, 0.09009009009009009, 0.3963963963963964, 0.0945945945945946, 0.08108108108108109, 0.06756756756756757, 0.06306306306306306, 0.06306306306306306, 0.06306306306306306, 0.06306306306306306, 0.06306306306306306, 0.06306306306306306, 0.05855855855855856, 0.05405405405405406, 0.04954954954954955, 0.04954954954954955, 0.05405405405405406, 0.04954954954954955, 0.04954954954954955, 0.04954954954954955, 0.05405405405405406, 0.05855855855855856, 0.05405405405405406, 0.05405405405405406, 0.05855855855855856, 0.05855855855855856, 0.05405405405405406, 0.05405405405405406, 0.05405405405405406, 0.05405405405405406, 0.05405405405405406, 0.05855855855855856, 0.05855855855855856, 0.05855855855855856, 0.05855855855855856, 0.05855855855855856, 0.05855855855855856, 0.05855855855855856, 0.05855855855855856, 0.05855855855855856, 0.05855855855855856, 0.9279279279279279, 0.9414414414414415, 0.9459459459459459, 0.9369369369369369, 0.8648648648648649, 0.05855855855855856, 0.07207207207207207, 0.07207207207207207, 0.07207207207207207, 0.06756756756756757, 0.07207207207207207, 0.06756756756756757, 0.07207207207207207, 0.07657657657657657, 0.07207207207207207, 0.07207207207207207, 0.5315315315315315, 0.7027027027027027, 0.8963963963963963, 0.9099099099099099, 0.8828828828828829, 0.6981981981981982, 0.06756756756756757, 0.06306306306306306, 0.06306306306306306, 0.05855855855855856, 0.05855855855855856, 0.06306306306306306, 0.06306306306306306, 0.06756756756756757, 0.05855855855855856, 0.06306306306306306, 0.32882882882882886, 0.31981981981981983, 0.32432432432432434, 0.7342342342342343, 0.8693693693693694, 0.8513513513513513, 0.5990990990990991, 0.33783783783783783, 0.3063063063063063, 0.22072072072072071, 0.21171171171171171, 0.17117117117117117, 0.17567567567567569, 0.14864864864864866, 0.21171171171171171, 0.2072072072072072, 0.15315315315315314, 0.14414414414414414, 0.13513513513513514, 0.9459459459459459, 0.9459459459459459, 0.11711711711711711, 0.0990990990990991, 0.08108108108108109, 0.07657657657657657, 0.08108108108108109, 0.08108108108108109, 0.08108108108108109, 0.08108108108108109, 0.08108108108108109, 0.09009009009009009, 0.9054054054054054, 0.9414414414414415, 0.6081081081081081, 0.09009009009009009, 0.26126126126126126, 0.11711711711711711, 0.0990990990990991, 0.0945945945945946, 0.1036036036036036, 0.0990990990990991, 0.09009009009009009, 0.09009009009009009, 0.0945945945945946, 0.09009009009009009, 0.0990990990990991, 0.1036036036036036, 0.0990990990990991, 0.0990990990990991, 0.0990990990990991, 0.0990990990990991, 0.0945945945945946, 0.08558558558558559, 0.09009009009009009, 0.08558558558558559, 0.08558558558558559, 0.08108108108108109, 0.08558558558558559, 0.1036036036036036, 0.0990990990990991, 0.1036036036036036, 0.1036036036036036, 0.9009009009009009, 0.9144144144144144, 0.9144144144144144, 0.8963963963963963, 0.10810810810810811, 0.11261261261261261, 0.11261261261261261, 0.1036036036036036, 0.10810810810810811, 0.11261261261261261, 0.10810810810810811, 0.6351351351351351, 0.6576576576576577, 0.6576576576576577, 0.6576576576576577, 0.6441441441441441, 0.6351351351351351, 0.1036036036036036, 0.1036036036036036, 0.10810810810810811, 0.11261261261261261, 0.11261261261261261, 0.10810810810810811, 0.1036036036036036, 0.1036036036036036, 0.1036036036036036, 0.1036036036036036, 0.10810810810810811, 0.10810810810810811, 0.10810810810810811, 0.10810810810810811, 0.10810810810810811, 0.10810810810810811, 0.1036036036036036, 0.1036036036036036, 0.1036036036036036, 0.1036036036036036, 0.1036036036036036, 0.1036036036036036, 0.1036036036036036, 0.1036036036036036, 0.1036036036036036, 0.1036036036036036, 0.11261261261261261, 0.12162162162162163, 0.13963963963963963, 0.14864864864864866, 0.15315315315315314, 0.16216216216216217, 0.16666666666666666, 0.17567567567567569, 0.18468468468468469], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/FTP.gap.json b/pfam_gap_rates/FTP.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..7a86ebeec9be63bb54702d0ee3a4fa9fe4883d61
--- /dev/null
+++ b/pfam_gap_rates/FTP.gap.json
@@ -0,0 +1 @@
+{"family": "FTP", "n_seqs": 565, "length": 52, "gap_rates": [0.7592920353982301, 0.415929203539823, 0.3168141592920354, 0.2849557522123894, 0.25309734513274335, 0.23539823008849559, 0.21061946902654868, 0.19823008849557522, 0.18053097345132743, 0.1663716814159292, 0.15398230088495576, 0.13805309734513274, 0.7415929203539823, 0.11858407079646018, 0.11150442477876106, 0.10973451327433628, 0.04601769911504425, 0.03185840707964602, 0.008849557522123894, 0.0017699115044247787, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.007079646017699115, 0.017699115044247787, 0.09911504424778761, 0.2, 0.03893805309734513, 0.04247787610619469, 0.05486725663716814, 0.06902654867256637, 0.08141592920353982, 0.10973451327433628, 0.15752212389380532, 0.18761061946902655, 0.22123893805309736, 0.2938053097345133, 0.3663716814159292, 0.584070796460177], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/F_bP_aldolase.gap.json b/pfam_gap_rates/F_bP_aldolase.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..12c76df601cb83d15c6a3d18a24cf4c4549efc9c
--- /dev/null
+++ b/pfam_gap_rates/F_bP_aldolase.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Fer4_12.gap.json b/pfam_gap_rates/Fer4_12.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..2c23d9a4f19a612380bf7e4264d2473701697188
--- /dev/null
+++ b/pfam_gap_rates/Fer4_12.gap.json
@@ -0,0 +1 @@
+{"family": "Fer4_12", "n_seqs": 5000, "length": 168, "gap_rates": [0.831, 0.742, 0.7228, 0.6958, 0.6772, 0.648, 0.6162, 0.5386, 0.4764, 0.4472, 0.3984, 0.9246, 0.1692, 0.085, 0.0324, 0.0112, 0.0108, 0.0094, 0.0078, 0.0078, 0.0078, 0.0078, 0.0106, 0.0124, 0.1376, 0.086, 0.0674, 0.0468, 0.036, 0.9468, 0.0318, 0.0398, 0.0292, 0.8966, 0.9128, 0.9334, 0.9396, 0.942, 0.9436, 0.9496, 0.948, 0.9428, 0.941, 0.935, 0.9166, 0.9044, 0.8746, 0.028, 0.0256, 0.0218, 0.021, 0.0188, 0.896, 0.0174, 0.9492, 0.7932, 0.033, 0.0276, 0.0296, 0.036, 0.0412, 0.024, 0.0202, 0.0298, 0.0442, 0.0432, 0.0416, 0.1124, 0.0554, 0.9116, 0.836, 0.019, 0.0152, 0.0116, 0.905, 0.8878, 0.0112, 0.011, 0.0112, 0.0114, 0.0126, 0.0164, 0.028, 0.0274, 0.0184, 0.0196, 0.021, 0.0204, 0.8414, 0.7906, 0.4178, 0.037, 0.0308, 0.0308, 0.0306, 0.0326, 0.0342, 0.037, 0.0396, 0.0412, 0.0456, 0.0518, 0.0592, 0.0714, 0.0818, 0.0894, 0.0958, 0.777, 0.4872, 0.3024, 0.149, 0.128, 0.1216, 0.1224, 0.1248, 0.128, 0.1352, 0.1458, 0.1626, 0.1748, 0.1884, 0.2038, 0.23, 0.2666, 0.3898, 0.47, 0.8662, 0.9316, 0.9152, 0.8058, 0.5088, 0.4654, 0.4214, 0.3776, 0.3838, 0.3792, 0.3818, 0.3864, 0.3946, 0.4038, 0.8922, 0.4272, 0.4466, 0.4544, 0.4772, 0.5524, 0.5794, 0.6056, 0.629, 0.6632, 0.6828, 0.7064, 0.7264, 0.7516, 0.773, 0.7956, 0.8072, 0.8122, 0.8176, 0.8184, 0.8264, 0.8354, 0.8478, 0.8566, 0.8648, 0.872, 0.8828, 0.9072], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Fer4_5.gap.json b/pfam_gap_rates/Fer4_5.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f39580de7e55ae40855425f7128d938205345133
--- /dev/null
+++ b/pfam_gap_rates/Fer4_5.gap.json
@@ -0,0 +1 @@
+{"family": "Fer4_5", "n_seqs": 3755, "length": 54, "gap_rates": [0.8053262316910785, 0.651930758988016, 0.5041278295605859, 0.37123834886817575, 0.2825565912117177, 0.20452729693741678, 0.15339547270306259, 0.12410119840213049, 0.11557922769640479, 0.9376830892143808, 0.10838881491344873, 0.1051930758988016, 0.09640479360852197, 0.09533954727030626, 0.09533954727030626, 0.0948069241011984, 0.09747003994673768, 0.09533954727030626, 0.9315579227696404, 0.944607190412783, 0.8426098535286285, 0.09880159786950732, 0.09933422103861518, 0.10386151797603196, 0.8599201065246338, 0.10732356857523302, 0.10838881491344873, 0.09347536617842876, 0.09134487350199734, 0.16697736351531292, 0.05459387483355526, 0.03488681757656458, 0.03781624500665779, 0.04047936085219707, 0.044207723035952065, 0.047137150466045274, 0.05299600532623169, 0.10625832223701731, 0.13022636484687083, 0.14860186418109186, 0.1659121171770972, 0.20639147802929428, 0.31424766977363516, 0.9123834886817577, 0.9081225033288948, 0.5560585885486019, 0.485219707057257, 0.5406125166444741, 0.5808255659121172, 0.6418109187749668, 0.7115845539280958, 0.7797603195739015, 0.8402130492676432, 0.9488681757656459], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Ferritin_2.gap.json b/pfam_gap_rates/Ferritin_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..45891fd627306996b80544fb9d1c10f7220968aa
--- /dev/null
+++ b/pfam_gap_rates/Ferritin_2.gap.json
@@ -0,0 +1 @@
+{"family": "Ferritin_2", "n_seqs": 720, "length": 181, "gap_rates": [0.5819444444444445, 0.2625, 0.19722222222222222, 0.15555555555555556, 0.14027777777777778, 0.125, 0.10555555555555556, 0.09583333333333334, 0.08472222222222223, 0.07083333333333333, 0.06527777777777778, 0.06111111111111111, 0.04861111111111111, 0.044444444444444446, 0.04027777777777778, 0.03888888888888889, 0.0375, 0.0375, 0.03611111111111111, 0.03194444444444444, 0.030555555555555555, 0.030555555555555555, 0.030555555555555555, 0.03194444444444444, 0.03611111111111111, 0.14722222222222223, 0.16527777777777777, 0.2375, 0.2513888888888889, 0.26666666666666666, 0.27361111111111114, 0.2763888888888889, 0.2625, 0.7388888888888889, 0.7583333333333333, 0.7708333333333334, 0.7736111111111111, 0.7902777777777777, 0.8013888888888889, 0.8236111111111111, 0.9347222222222222, 0.8069444444444445, 0.7902777777777777, 0.7875, 0.7736111111111111, 0.7625, 0.7513888888888889, 0.7347222222222223, 0.06666666666666667, 0.03194444444444444, 0.02361111111111111, 0.02361111111111111, 0.022222222222222223, 0.02638888888888889, 0.029166666666666667, 0.025, 0.95, 0.022222222222222223, 0.019444444444444445, 0.019444444444444445, 0.018055555555555554, 0.016666666666666666, 0.016666666666666666, 0.018055555555555554, 0.018055555555555554, 0.016666666666666666, 0.016666666666666666, 0.016666666666666666, 0.016666666666666666, 0.016666666666666666, 0.016666666666666666, 0.016666666666666666, 0.015277777777777777, 0.016666666666666666, 0.018055555555555554, 0.018055555555555554, 0.018055555555555554, 0.018055555555555554, 0.027777777777777776, 0.4444444444444444, 0.5944444444444444, 0.5763888888888888, 0.11805555555555555, 0.14027777777777778, 0.12777777777777777, 0.030555555555555555, 0.041666666666666664, 0.9430555555555555, 0.8958333333333334, 0.030555555555555555, 0.04027777777777778, 0.027777777777777776, 0.02638888888888889, 0.029166666666666667, 0.030555555555555555, 0.02361111111111111, 0.675, 0.6902777777777778, 0.7305555555555555, 0.7513888888888889, 0.7597222222222222, 0.7736111111111111, 0.7791666666666667, 0.8, 0.8166666666666667, 0.9430555555555555, 0.95, 0.8291666666666667, 0.8013888888888889, 0.7875, 0.7763888888888889, 0.7680555555555556, 0.7569444444444444, 0.7458333333333333, 0.7083333333333334, 0.6833333333333333, 0.6638888888888889, 0.5513888888888889, 0.4652777777777778, 0.44027777777777777, 0.025, 0.025, 0.025, 0.02361111111111111, 0.025, 0.025, 0.02638888888888889, 0.025, 0.025, 0.022222222222222223, 0.022222222222222223, 0.020833333333333332, 0.020833333333333332, 0.022222222222222223, 0.020833333333333332, 0.020833333333333332, 0.020833333333333332, 0.020833333333333332, 0.020833333333333332, 0.022222222222222223, 0.022222222222222223, 0.022222222222222223, 0.02638888888888889, 0.02638888888888889, 0.02638888888888889, 0.027777777777777776, 0.027777777777777776, 0.029166666666666667, 0.9472222222222222, 0.029166666666666667, 0.029166666666666667, 0.03194444444444444, 0.9444444444444444, 0.0375, 0.034722222222222224, 0.041666666666666664, 0.034722222222222224, 0.03611111111111111, 0.0375, 0.03888888888888889, 0.0375, 0.0375, 0.0375, 0.0375, 0.0375, 0.0375, 0.03888888888888889, 0.04027777777777778, 0.04027777777777778, 0.04027777777777778, 0.04027777777777778, 0.043055555555555555, 0.05555555555555555, 0.0625, 0.08055555555555556, 0.09305555555555556, 0.12361111111111112, 0.18055555555555555, 0.3486111111111111, 0.5736111111111111, 0.8666666666666667], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Ferrochelatase.gap.json b/pfam_gap_rates/Ferrochelatase.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..2aa8ceaf9d592cdbaabacb99b0e45ace606a393d
--- /dev/null
+++ b/pfam_gap_rates/Ferrochelatase.gap.json
@@ -0,0 +1 @@
+{"family": "Ferrochelatase", "n_seqs": 1651, "length": 382, "gap_rates": [0.6262870987280436, 0.15081768625075712, 0.11811023622047244, 0.10175651120533011, 0.09812235009085403, 0.07934585099939431, 0.07389460932768019, 0.07389460932768019, 0.06359781950333132, 0.06238643246517262, 0.06238643246517262, 0.06238643246517262, 0.061780738946093275, 0.06117504542701393, 0.06056935190793458, 0.61114476075106, 0.6105390672319806, 0.06117504542701393, 0.06056935190793458, 0.05996365838885524, 0.05875227135069655, 0.05875227135069655, 0.05875227135069655, 0.05875227135069655, 0.05875227135069655, 0.059357964869775896, 0.059357964869775896, 0.05875227135069655, 0.061780738946093275, 0.06238643246517262, 0.06117504542701393, 0.06783767413688674, 0.06420351302241066, 0.05996365838885524, 0.06238643246517262, 0.28649303452453057, 0.2852816474863719, 0.9267110841913991, 0.9406420351302242, 0.4875832828588734, 0.4149000605693519, 0.3585705632949727, 0.2919442761962447, 0.29133858267716534, 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\ No newline at end of file
diff --git a/pfam_gap_rates/Filament.gap.json b/pfam_gap_rates/Filament.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..8f8389ef9a62fe82571e756c94b766d92f3c63b4
--- /dev/null
+++ b/pfam_gap_rates/Filament.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/FixP_N.gap.json b/pfam_gap_rates/FixP_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..23dec39ef1233ca711760358fc960d4d99cd75a9
--- /dev/null
+++ b/pfam_gap_rates/FixP_N.gap.json
@@ -0,0 +1 @@
+{"family": "FixP_N", "n_seqs": 491, "length": 50, "gap_rates": [0.8716904276985743, 0.31160896130346233, 0.1670061099796334, 0.0814663951120163, 0.048879837067209775, 0.038696537678207736, 0.024439918533604887, 0.014256619144602852, 0.012219959266802444, 0.008146639511201629, 0.006109979633401222, 0.7657841140529531, 0.006109979633401222, 0.006109979633401222, 0.002036659877800407, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.006109979633401222, 0.945010183299389, 0.008146639511201629, 0.020366598778004074, 0.04480651731160896, 0.06313645621181263, 0.09368635437881874, 0.15885947046843177, 0.3340122199592668, 0.8085539714867617], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/FlhC.gap.json b/pfam_gap_rates/FlhC.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..72e5b2f4d4ddb3d5f3cbce5e786f4fe05aec84a2
--- /dev/null
+++ b/pfam_gap_rates/FlhC.gap.json
@@ -0,0 +1 @@
+{"family": "FlhC", "n_seqs": 115, "length": 186, "gap_rates": [0.45217391304347826, 0.3826086956521739, 0.2608695652173913, 0.21739130434782608, 0.21739130434782608, 0.20869565217391303, 0.20869565217391303, 0.17391304347826086, 0.1565217391304348, 0.13043478260869565, 0.12173913043478261, 0.11304347826086956, 0.0782608695652174, 0.06086956521739131, 0.043478260869565216, 0.043478260869565216, 0.043478260869565216, 0.043478260869565216, 0.043478260869565216, 0.043478260869565216, 0.043478260869565216, 0.043478260869565216, 0.043478260869565216, 0.043478260869565216, 0.043478260869565216, 0.043478260869565216, 0.043478260869565216, 0.043478260869565216, 0.043478260869565216, 0.043478260869565216, 0.043478260869565216, 0.043478260869565216, 0.043478260869565216, 0.043478260869565216, 0.043478260869565216, 0.034782608695652174, 0.034782608695652174, 0.034782608695652174, 0.034782608695652174, 0.02608695652173913, 0.034782608695652174, 0.02608695652173913, 0.02608695652173913, 0.02608695652173913, 0.02608695652173913, 0.034782608695652174, 0.034782608695652174, 0.043478260869565216, 0.02608695652173913, 0.02608695652173913, 0.05217391304347826, 0.02608695652173913, 0.02608695652173913, 0.02608695652173913, 0.02608695652173913, 0.02608695652173913, 0.02608695652173913, 0.02608695652173913, 0.02608695652173913, 0.02608695652173913, 0.02608695652173913, 0.02608695652173913, 0.02608695652173913, 0.017391304347826087, 0.9478260869565217, 0.9391304347826087, 0.02608695652173913, 0.02608695652173913, 0.017391304347826087, 0.017391304347826087, 0.017391304347826087, 0.017391304347826087, 0.017391304347826087, 0.017391304347826087, 0.017391304347826087, 0.017391304347826087, 0.017391304347826087, 0.017391304347826087, 0.017391304347826087, 0.017391304347826087, 0.017391304347826087, 0.017391304347826087, 0.017391304347826087, 0.017391304347826087, 0.017391304347826087, 0.11304347826086956, 0.034782608695652174, 0.02608695652173913, 0.017391304347826087, 0.017391304347826087, 0.017391304347826087, 0.017391304347826087, 0.02608695652173913, 0.017391304347826087, 0.017391304347826087, 0.017391304347826087, 0.017391304347826087, 0.017391304347826087, 0.017391304347826087, 0.017391304347826087, 0.017391304347826087, 0.017391304347826087, 0.02608695652173913, 0.02608695652173913, 0.02608695652173913, 0.02608695652173913, 0.017391304347826087, 0.017391304347826087, 0.8, 0.1391304347826087, 0.9217391304347826, 0.9217391304347826, 0.9217391304347826, 0.9217391304347826, 0.9217391304347826, 0.14782608695652175, 0.11304347826086956, 0.043478260869565216, 0.008695652173913044, 0.008695652173913044, 0.008695652173913044, 0.008695652173913044, 0.008695652173913044, 0.008695652173913044, 0.008695652173913044, 0.008695652173913044, 0.008695652173913044, 0.008695652173913044, 0.008695652173913044, 0.008695652173913044, 0.008695652173913044, 0.008695652173913044, 0.008695652173913044, 0.008695652173913044, 0.008695652173913044, 0.008695652173913044, 0.9217391304347826, 0.9217391304347826, 0.9217391304347826, 0.9217391304347826, 0.9217391304347826, 0.9130434782608695, 0.008695652173913044, 0.008695652173913044, 0.008695652173913044, 0.008695652173913044, 0.008695652173913044, 0.008695652173913044, 0.008695652173913044, 0.008695652173913044, 0.008695652173913044, 0.043478260869565216, 0.008695652173913044, 0.008695652173913044, 0.008695652173913044, 0.008695652173913044, 0.008695652173913044, 0.008695652173913044, 0.008695652173913044, 0.008695652173913044, 0.017391304347826087, 0.02608695652173913, 0.034782608695652174, 0.02608695652173913, 0.08695652173913043, 0.05217391304347826, 0.008695652173913044, 0.043478260869565216, 0.02608695652173913, 0.017391304347826087, 0.017391304347826087, 0.017391304347826087, 0.017391304347826087, 0.017391304347826087, 0.02608695652173913, 0.043478260869565216, 0.10434782608695652, 0.12173913043478261, 0.1565217391304348, 0.16521739130434782, 0.16521739130434782, 0.2, 0.20869565217391303, 0.25217391304347825, 0.3565217391304348, 0.5739130434782609], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/FliS.gap.json b/pfam_gap_rates/FliS.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..3459708cb148f85537cf3a29f648570793660b1c
--- /dev/null
+++ b/pfam_gap_rates/FliS.gap.json
@@ -0,0 +1 @@
+{"family": "FliS", "n_seqs": 835, "length": 120, "gap_rates": [0.7437125748502994, 0.3317365269461078, 0.18922155688622755, 0.1568862275449102, 0.15209580838323353, 0.13652694610778443, 0.725748502994012, 0.7413173652694611, 0.725748502994012, 0.7233532934131737, 0.08502994011976048, 0.06467065868263473, 0.06107784431137724, 0.05389221556886228, 0.03952095808383234, 0.033532934131736525, 0.031137724550898204, 0.02874251497005988, 0.027544910179640718, 0.027544910179640718, 0.027544910179640718, 0.025149700598802394, 0.025149700598802394, 0.017964071856287425, 0.019161676646706587, 0.019161676646706587, 0.019161676646706587, 0.019161676646706587, 0.017964071856287425, 0.017964071856287425, 0.017964071856287425, 0.017964071856287425, 0.016766467065868262, 0.015568862275449102, 0.015568862275449102, 0.016766467065868262, 0.019161676646706587, 0.017964071856287425, 0.019161676646706587, 0.019161676646706587, 0.029940119760479042, 0.025149700598802394, 0.025149700598802394, 0.023952095808383235, 0.02035928143712575, 0.022754491017964073, 0.022754491017964073, 0.022754491017964073, 0.023952095808383235, 0.019161676646706587, 0.017964071856287425, 0.015568862275449102, 0.013173652694610778, 0.010778443113772455, 0.009580838323353293, 0.009580838323353293, 0.009580838323353293, 0.009580838323353293, 0.009580838323353293, 0.8898203592814371, 0.009580838323353293, 0.009580838323353293, 0.009580838323353293, 0.009580838323353293, 0.008383233532934131, 0.009580838323353293, 0.009580838323353293, 0.011976047904191617, 0.00718562874251497, 0.010778443113772455, 0.011976047904191617, 0.31017964071856285, 0.43832335329341315, 0.011976047904191617, 0.009580838323353293, 0.009580838323353293, 0.010778443113772455, 0.009580838323353293, 0.009580838323353293, 0.009580838323353293, 0.009580838323353293, 0.009580838323353293, 0.009580838323353293, 0.009580838323353293, 0.010778443113772455, 0.009580838323353293, 0.009580838323353293, 0.009580838323353293, 0.009580838323353293, 0.009580838323353293, 0.010778443113772455, 0.011976047904191617, 0.013173652694610778, 0.016766467065868262, 0.02155688622754491, 0.023952095808383235, 0.023952095808383235, 0.02035928143712575, 0.019161676646706587, 0.016766467065868262, 0.016766467065868262, 0.01437125748502994, 0.013173652694610778, 0.013173652694610778, 0.013173652694610778, 0.011976047904191617, 0.011976047904191617, 0.011976047904191617, 0.011976047904191617, 0.011976047904191617, 0.013173652694610778, 0.013173652694610778, 0.016766467065868262, 0.017964071856287425, 0.019161676646706587, 0.022754491017964073, 0.026347305389221556, 0.06107784431137724, 0.13053892215568863, 0.8946107784431138], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/FtsA.gap.json b/pfam_gap_rates/FtsA.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a7a988d0ff8b95e91088ba8f728522eb14bc1449
--- /dev/null
+++ b/pfam_gap_rates/FtsA.gap.json
@@ -0,0 +1 @@
+{"family": "FtsA", "n_seqs": 2462, "length": 233, "gap_rates": [0.22258326563769293, 0.017871649065800164, 0.002843216896831844, 0.0020308692120227455, 0.0012185215272136475, 0.0012185215272136475, 0.0012185215272136475, 0.0012185215272136475, 0.0012185215272136475, 0.0012185215272136475, 0.0008123476848090983, 0.0008123476848090983, 0.0008123476848090983, 0.0008123476848090983, 0.0008123476848090983, 0.0008123476848090983, 0.0008123476848090983, 0.06133225020308692, 0.04752233956133225, 0.017465475223395612, 0.017059301380991064, 0.0020308692120227455, 0.9378554021121039, 0.0008123476848090983, 0.0008123476848090983, 0.0008123476848090983, 0.0008123476848090983, 0.00040617384240454913, 0.00040617384240454913, 0.7229894394800975, 0.7229894394800975, 0.718927701056052, 0.00040617384240454913, 0.00040617384240454913, 0.0012185215272136475, 0.00040617384240454913, 0.0, 0.0, 0.0, 0.0, 0.7173030056864338, 0.7173030056864338, 0.7177091795288384, 0.7185215272136475, 0.7177091795288384, 0.7173030056864338, 0.7168968318440292, 0.0, 0.00040617384240454913, 0.020714865962632008, 0.00040617384240454913, 0.0, 0.0, 0.0, 0.00040617384240454913, 0.00040617384240454913, 0.0008123476848090983, 0.0008123476848090983, 0.0008123476848090983, 0.0008123476848090983, 0.0008123476848090983, 0.0012185215272136475, 0.0012185215272136475, 0.24411047928513405, 0.268480909829407, 0.29041429731925267, 0.10641754670999187, 0.10073111291632819, 0.0950446791226645, 0.08326563769293258, 0.026401299756295696, 0.07839155158407798, 0.08935824532900082, 0.1173842404549147, 0.1372867587327376, 0.17465475223395613, 0.20389926888708368, 0.24817221770917952, 0.2802599512591389, 0.33549959382615757, 0.6730300568643379, 0.7571080422420796, 0.8549959382615759, 0.8858651502843217, 0.7737611697806661, 0.6974004874086109, 0.6437855402112104, 0.3005686433793664, 0.26157595450852966, 0.21364744110479286, 0.19496344435418358, 0.15190901705930138, 0.12347684809098294, 0.0982940698619009, 0.08285946385052803, 0.0718927701056052, 0.028025995125913892, 0.3411860276198213, 0.34159220146222585, 0.33915515840779853, 0.37408610885458976, 0.40089358245329, 0.3667749796913079, 0.3619008935824533, 0.3545897644191714, 0.010560519902518278, 0.012591389114541024, 0.01380991064175467, 0.01380991064175467, 0.018277822908204712, 0.019090170593013808, 0.020714865962632008, 0.021933387489845652, 0.025995125913891144, 0.02761982128350934, 0.03127538586515029, 0.03290008123476848, 0.036555645816409424, 0.038180341186027617, 0.03858651502843217, 0.04061738424045491, 0.050365556458164096, 0.08123476848090982, 0.40861088545897645, 0.43907392363931763, 0.47278635255889523, 0.5012185215272137, 0.5844841592201462, 0.5950446791226645, 0.6080422420796101, 0.6348497156783103, 0.6592201462225833, 0.8322502030869212, 0.8570268074735987, 0.8647441104792851, 0.8858651502843217, 0.9317627944760357, 0.9358245329000813, 0.9451665312753859, 0.9366368805848904, 0.934199837530463, 0.8919577579203899, 0.8834281072298944, 0.8643379366368806, 0.847684809098294, 0.6685621445978879, 0.6466287571080422, 0.628757108042242, 0.6007311129163282, 0.5926076360682372, 0.536961819658814, 0.49228269699431354, 0.46303818034118605, 0.4346060113728676, 0.16003249390739235, 0.056051990251827784, 0.04183590576766856, 0.039398862713241264, 0.03858651502843217, 0.036961819658813976, 0.036555645816409424, 0.032087733549959384, 0.028838342810722988, 0.025995125913891144, 0.024776604386677496, 0.021121039805036556, 0.01949634443541836, 0.01868399675060926, 0.017059301380991064, 0.01380991064175467, 0.013403736799350122, 0.011779041429731926, 0.010560519902518278, 0.015840779853777416, 0.016246953696181964, 0.016246953696181964, 0.016653127538586516, 0.016653127538586516, 0.016653127538586516, 0.017059301380991064, 0.017059301380991064, 0.017871649065800164, 0.01868399675060926, 0.020714865962632008, 0.024370430544272948, 0.026807473598700244, 0.03249390739236393, 0.7640129975629569, 0.8025995125913891, 0.8208773354995939, 0.8610885458976442, 0.8525588952071487, 0.80625507717303, 0.7696994313566207, 0.7205523964256701, 0.0686433793663688, 0.48294069861900896, 0.5129975629569455, 0.5398050365556458, 0.9122664500406173, 0.9406986190089358, 0.5475223395613322, 0.5223395613322502, 0.5024370430544273, 0.4488220958570268, 0.2404549147034931, 0.3972380178716491, 0.4524776604386678, 0.5280259951259139, 0.5454914703493096, 0.8354995938261576, 0.9236393176279447, 0.9374492282696995, 0.9329813160032494, 0.8813972380178716, 0.7404549147034931, 0.5349309504467912, 0.5190901705930138, 0.437855402112104, 0.41754670999187654, 0.41145410235580826, 0.602761982128351, 0.4000812347684809, 0.39480097481722176, 0.39480097481722176, 0.3891145410235581, 0.38992688870836717, 0.3212835093419984, 0.3281884646628757, 0.3407798537774167, 0.3688058489033306, 0.40861088545897645, 0.4683184402924452], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/FtsL.gap.json b/pfam_gap_rates/FtsL.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..33f32076288e08aad62f9e07ed84a174275e87be
--- /dev/null
+++ b/pfam_gap_rates/FtsL.gap.json
@@ -0,0 +1 @@
+{"family": "FtsL", "n_seqs": 436, "length": 99, "gap_rates": [0.9334862385321101, 0.8967889908256881, 0.8738532110091743, 0.8555045871559633, 0.8371559633027523, 0.823394495412844, 0.8119266055045872, 0.7981651376146789, 0.7729357798165137, 0.7591743119266054, 0.7247706422018348, 0.6995412844036697, 0.6536697247706422, 0.3738532110091743, 0.22935779816513763, 0.1720183486238532, 0.1353211009174312, 0.10550458715596331, 0.06880733944954129, 0.05733944954128441, 0.045871559633027525, 0.0389908256880734, 0.034403669724770644, 0.03669724770642202, 0.03669724770642202, 0.03211009174311927, 0.034403669724770644, 0.02981651376146789, 0.022935779816513763, 0.022935779816513763, 0.022935779816513763, 0.020642201834862386, 0.020642201834862386, 0.020642201834862386, 0.06651376146788991, 0.05045871559633028, 0.02981651376146789, 0.02981651376146789, 0.022935779816513763, 0.022935779816513763, 0.020642201834862386, 0.022935779816513763, 0.01834862385321101, 0.9288990825688074, 0.9151376146788991, 0.011467889908256881, 0.011467889908256881, 0.009174311926605505, 0.006880733944954129, 0.006880733944954129, 0.0045871559633027525, 0.0045871559633027525, 0.0045871559633027525, 0.0022935779816513763, 0.0022935779816513763, 0.0045871559633027525, 0.0045871559633027525, 0.0022935779816513763, 0.0022935779816513763, 0.0045871559633027525, 0.0045871559633027525, 0.0045871559633027525, 0.0022935779816513763, 0.0022935779816513763, 0.0022935779816513763, 0.0022935779816513763, 0.0022935779816513763, 0.0022935779816513763, 0.0022935779816513763, 0.0022935779816513763, 0.0022935779816513763, 0.0045871559633027525, 0.0045871559633027525, 0.0045871559633027525, 0.0045871559633027525, 0.0045871559633027525, 0.0045871559633027525, 0.0045871559633027525, 0.0045871559633027525, 0.0045871559633027525, 0.0045871559633027525, 0.05963302752293578, 0.01834862385321101, 0.02981651376146789, 0.01834862385321101, 0.020642201834862386, 0.027522935779816515, 0.03211009174311927, 0.034403669724770644, 0.034403669724770644, 0.0481651376146789, 0.08486238532110092, 0.12155963302752294, 0.1559633027522936, 0.2018348623853211, 0.2706422018348624, 0.32798165137614677, 0.5389908256880734, 0.9495412844036697], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Fumble.gap.json b/pfam_gap_rates/Fumble.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..05efdca909a43090a0f8ecfb1b63f606829b0992
--- /dev/null
+++ b/pfam_gap_rates/Fumble.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Fungal_trans.gap.json b/pfam_gap_rates/Fungal_trans.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..9f288ae5f661d5302d4f7f3e5251ab38393c33a5
--- /dev/null
+++ b/pfam_gap_rates/Fungal_trans.gap.json
@@ -0,0 +1 @@
+{"family": "Fungal_trans", "n_seqs": 5000, "length": 343, "gap_rates": [0.7666, 0.5092, 0.3898, 0.342, 0.331, 0.326, 0.32, 0.3124, 0.3074, 0.301, 0.2918, 0.284, 0.2722, 0.264, 0.2582, 0.2554, 0.2554, 0.252, 0.251, 0.2488, 0.248, 0.247, 0.2478, 0.2428, 0.7266, 0.8538, 0.9028, 0.9434, 0.9274, 0.8808, 0.8042, 0.6886, 0.649, 0.5912, 0.5468, 0.4944, 0.4206, 0.4036, 0.3298, 0.315, 0.301, 0.2846, 0.1946, 0.1848, 0.18, 0.174, 0.1712, 0.1646, 0.932, 0.9096, 0.1564, 0.155, 0.153, 0.1526, 0.1514, 0.151, 0.1516, 0.1512, 0.1508, 0.151, 0.1508, 0.1506, 0.1496, 0.149, 0.1486, 0.1488, 0.1488, 0.157, 0.2832, 0.261, 0.2464, 0.2424, 0.245, 0.2646, 0.3684, 0.3964, 0.8158, 0.8588, 0.8956, 0.924, 0.9412, 0.9476, 0.9334, 0.9124, 0.8766, 0.8396, 0.7846, 0.6658, 0.552, 0.4606, 0.4296, 0.4874, 0.4284, 0.3922, 0.3518, 0.1748, 0.1808, 0.1858, 0.1882, 0.1868, 0.166, 0.8712, 0.9068, 0.9324, 0.9424, 0.9178, 0.8924, 0.846, 0.5712, 0.4616, 0.2214, 0.1698, 0.1362, 0.1212, 0.102, 0.091, 0.0904, 0.3834, 0.096, 0.0722, 0.0658, 0.0618, 0.0588, 0.063, 0.059, 0.0548, 0.0528, 0.0516, 0.0522, 0.05, 0.0506, 0.0514, 0.0508, 0.049, 0.0478, 0.049, 0.946, 0.931, 0.0666, 0.921, 0.0842, 0.07, 0.0588, 0.0524, 0.0436, 0.0388, 0.8566, 0.9464, 0.8796, 0.8348, 0.032, 0.0312, 0.0302, 0.0294, 0.0294, 0.0394, 0.0346, 0.029, 0.027, 0.027, 0.0254, 0.0256, 0.026, 0.0246, 0.0244, 0.0402, 0.0376, 0.0346, 0.0392, 0.0376, 0.0638, 0.0716, 0.544, 0.684, 0.6768, 0.7764, 0.8144, 0.8478, 0.874, 0.8942, 0.9144, 0.9264, 0.9438, 0.9484, 0.937, 0.9198, 0.9064, 0.8848, 0.8626, 0.8362, 0.7968, 0.7586, 0.6278, 0.5844, 0.511, 0.0698, 0.0502, 0.0426, 0.0412, 0.3424, 0.0468, 0.035, 0.0342, 0.0426, 0.038, 0.0296, 0.0284, 0.0286, 0.0292, 0.0314, 0.036, 0.0394, 0.041, 0.0446, 0.0466, 0.0496, 0.0518, 0.0558, 0.0598, 0.0652, 0.0718, 0.0742, 0.0728, 0.0754, 0.078, 0.081, 0.8328, 0.0952, 0.1406, 0.1342, 0.1354, 0.1432, 0.1556, 0.1738, 0.1826, 0.1894, 0.1986, 0.9432, 0.2122, 0.218, 0.2316, 0.2514, 0.271, 0.2852, 0.5758, 0.3976, 0.403, 0.4138, 0.4286, 0.4446, 0.455, 0.4678, 0.4808, 0.4926, 0.502, 0.5128, 0.5218, 0.5348, 0.5554, 0.8048, 0.8186, 0.8804, 0.9096, 0.9292, 0.9456, 0.9498, 0.9396, 0.92, 0.8952, 0.8704, 0.8258, 0.7894, 0.757, 0.7138, 0.6814, 0.6626, 0.647, 0.6412, 0.6378, 0.6336, 0.6262, 0.6234, 0.6192, 0.618, 0.6206, 0.6218, 0.6236, 0.6266, 0.6306, 0.633, 0.6346, 0.6364, 0.6388, 0.9388, 0.9428, 0.9456, 0.948, 0.9492, 0.9476, 0.9442, 0.941, 0.9362, 0.6488, 0.662, 0.6652, 0.752, 0.6828, 0.6844, 0.6884, 0.694, 0.6994, 0.7038, 0.708, 0.7128, 0.717, 0.7196, 0.724, 0.728, 0.731, 0.7352, 0.9136, 0.9384, 0.9444, 0.9332, 0.9066, 0.8902, 0.8638, 0.8424, 0.8196, 0.8076, 0.788, 0.7694, 0.7702, 0.7708, 0.7696, 0.7724, 0.7738, 0.7752, 0.7772, 0.7804, 0.7848, 0.7892, 0.8446], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Fzo_mitofusin.gap.json b/pfam_gap_rates/Fzo_mitofusin.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e12da4f8baffcc2d4ce3049c17333337051d0688
--- /dev/null
+++ b/pfam_gap_rates/Fzo_mitofusin.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/G3P_antiterm.gap.json b/pfam_gap_rates/G3P_antiterm.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..710063c0b2d52e3d98538e542b9cc27a7f35d1d4
--- /dev/null
+++ b/pfam_gap_rates/G3P_antiterm.gap.json
@@ -0,0 +1 @@
+{"family": "G3P_antiterm", "n_seqs": 324, "length": 175, "gap_rates": [0.1574074074074074, 0.05864197530864197, 0.04938271604938271, 0.037037037037037035, 0.037037037037037035, 0.037037037037037035, 0.037037037037037035, 0.033950617283950615, 0.030864197530864196, 0.030864197530864196, 0.030864197530864196, 0.030864197530864196, 0.030864197530864196, 0.030864197530864196, 0.033950617283950615, 0.033950617283950615, 0.040123456790123455, 0.9012345679012346, 0.030864197530864196, 0.030864197530864196, 0.027777777777777776, 0.027777777777777776, 0.027777777777777776, 0.027777777777777776, 0.027777777777777776, 0.027777777777777776, 0.027777777777777776, 0.027777777777777776, 0.027777777777777776, 0.027777777777777776, 0.027777777777777776, 0.027777777777777776, 0.027777777777777776, 0.027777777777777776, 0.027777777777777776, 0.030864197530864196, 0.030864197530864196, 0.030864197530864196, 0.030864197530864196, 0.033950617283950615, 0.030864197530864196, 0.030864197530864196, 0.030864197530864196, 0.030864197530864196, 0.030864197530864196, 0.030864197530864196, 0.027777777777777776, 0.027777777777777776, 0.030864197530864196, 0.030864197530864196, 0.030864197530864196, 0.030864197530864196, 0.027777777777777776, 0.024691358024691357, 0.027777777777777776, 0.027777777777777776, 0.027777777777777776, 0.027777777777777776, 0.027777777777777776, 0.027777777777777776, 0.027777777777777776, 0.027777777777777776, 0.027777777777777776, 0.027777777777777776, 0.027777777777777776, 0.027777777777777776, 0.027777777777777776, 0.027777777777777776, 0.027777777777777776, 0.1419753086419753, 0.030864197530864196, 0.027777777777777776, 0.027777777777777776, 0.027777777777777776, 0.027777777777777776, 0.027777777777777776, 0.027777777777777776, 0.027777777777777776, 0.027777777777777776, 0.027777777777777776, 0.027777777777777776, 0.027777777777777776, 0.027777777777777776, 0.027777777777777776, 0.027777777777777776, 0.027777777777777776, 0.027777777777777776, 0.027777777777777776, 0.027777777777777776, 0.027777777777777776, 0.033950617283950615, 0.033950617283950615, 0.033950617283950615, 0.033950617283950615, 0.033950617283950615, 0.033950617283950615, 0.033950617283950615, 0.033950617283950615, 0.033950617283950615, 0.033950617283950615, 0.033950617283950615, 0.033950617283950615, 0.033950617283950615, 0.033950617283950615, 0.033950617283950615, 0.030864197530864196, 0.030864197530864196, 0.030864197530864196, 0.030864197530864196, 0.030864197530864196, 0.030864197530864196, 0.033950617283950615, 0.027777777777777776, 0.027777777777777776, 0.06481481481481481, 0.027777777777777776, 0.027777777777777776, 0.027777777777777776, 0.027777777777777776, 0.027777777777777776, 0.027777777777777776, 0.027777777777777776, 0.027777777777777776, 0.024691358024691357, 0.024691358024691357, 0.024691358024691357, 0.024691358024691357, 0.021604938271604937, 0.8302469135802469, 0.027777777777777776, 0.024691358024691357, 0.024691358024691357, 0.024691358024691357, 0.024691358024691357, 0.024691358024691357, 0.027777777777777776, 0.027777777777777776, 0.027777777777777776, 0.027777777777777776, 0.043209876543209874, 0.030864197530864196, 0.024691358024691357, 0.021604938271604937, 0.021604938271604937, 0.021604938271604937, 0.021604938271604937, 0.021604938271604937, 0.021604938271604937, 0.021604938271604937, 0.021604938271604937, 0.021604938271604937, 0.021604938271604937, 0.021604938271604937, 0.021604938271604937, 0.021604938271604937, 0.021604938271604937, 0.027777777777777776, 0.021604938271604937, 0.021604938271604937, 0.021604938271604937, 0.021604938271604937, 0.021604938271604937, 0.024691358024691357, 0.021604938271604937, 0.024691358024691357, 0.024691358024691357, 0.024691358024691357, 0.024691358024691357, 0.024691358024691357, 0.024691358024691357, 0.027777777777777776, 0.037037037037037035, 0.037037037037037035, 0.037037037037037035, 0.04938271604938271], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/G6PD_C.gap.json b/pfam_gap_rates/G6PD_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..9270844995085e3ca7debeb85ccb210ae070ff06
--- /dev/null
+++ b/pfam_gap_rates/G6PD_C.gap.json
@@ -0,0 +1 @@
+{"family": "G6PD_C", "n_seqs": 1800, "length": 311, "gap_rates": [0.40166666666666667, 0.11888888888888889, 0.07555555555555556, 0.07444444444444444, 0.07277777777777777, 0.07166666666666667, 0.07111111111111111, 0.06944444444444445, 0.0661111111111111, 0.06277777777777778, 0.06166666666666667, 0.06055555555555556, 0.059444444444444446, 0.058888888888888886, 0.058888888888888886, 0.058333333333333334, 0.058888888888888886, 0.05722222222222222, 0.05611111111111111, 0.05611111111111111, 0.05444444444444444, 0.05388888888888889, 0.05388888888888889, 0.05388888888888889, 0.05444444444444444, 0.05444444444444444, 0.05333333333333334, 0.05277777777777778, 0.05277777777777778, 0.05333333333333334, 0.05277777777777778, 0.052222222222222225, 0.052222222222222225, 0.05611111111111111, 0.05277777777777778, 0.056666666666666664, 0.05444444444444444, 0.05444444444444444, 0.05388888888888889, 0.05388888888888889, 0.05388888888888889, 0.05388888888888889, 0.05277777777777778, 0.05333333333333334, 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\ No newline at end of file
diff --git a/pfam_gap_rates/GARS_C.gap.json b/pfam_gap_rates/GARS_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..dc448ea221531e010d5fe77ba6194038d73d2f8f
--- /dev/null
+++ b/pfam_gap_rates/GARS_C.gap.json
@@ -0,0 +1 @@
+{"family": "GARS_C", "n_seqs": 2176, "length": 95, "gap_rates": [0.27068014705882354, 0.04963235294117647, 0.03400735294117647, 0.03125, 0.029871323529411766, 0.029411764705882353, 0.029411764705882353, 0.028952205882352942, 0.025275735294117647, 0.02389705882352941, 0.02389705882352941, 0.02389705882352941, 0.02297794117647059, 0.02297794117647059, 0.022518382352941176, 0.022518382352941176, 0.0234375, 0.02297794117647059, 0.022518382352941176, 0.022058823529411766, 0.022058823529411766, 0.035845588235294115, 0.021599264705882353, 0.050551470588235295, 0.10431985294117647, 0.45358455882352944, 0.9204963235294118, 0.6286764705882353, 0.265625, 0.06433823529411764, 0.02389705882352941, 0.02022058823529412, 0.05330882352941176, 0.042279411764705885, 0.034926470588235295, 0.024816176470588234, 0.024356617647058824, 0.02389705882352941, 0.02297794117647059, 0.02389705882352941, 0.025275735294117647, 0.013786764705882353, 0.01884191176470588, 0.019761029411764705, 0.6819852941176471, 0.9416360294117647, 0.02803308823529412, 0.019761029411764705, 0.017463235294117647, 0.006433823529411764, 0.00505514705882353, 0.00505514705882353, 0.003216911764705882, 0.002297794117647059, 0.002297794117647059, 0.002297794117647059, 0.002297794117647059, 0.002297794117647059, 0.002297794117647059, 0.002297794117647059, 0.002297794117647059, 0.002297794117647059, 0.0027573529411764708, 0.0027573529411764708, 0.002297794117647059, 0.003216911764705882, 0.002297794117647059, 0.002297794117647059, 0.0027573529411764708, 0.0027573529411764708, 0.0027573529411764708, 0.003216911764705882, 0.003216911764705882, 0.003216911764705882, 0.003676470588235294, 0.003676470588235294, 0.003676470588235294, 0.003676470588235294, 0.003676470588235294, 0.004136029411764706, 0.004136029411764706, 0.009191176470588236, 0.008272058823529412, 0.025275735294117647, 0.004136029411764706, 0.00505514705882353, 0.0055147058823529415, 0.0055147058823529415, 0.006433823529411764, 0.006433823529411764, 0.006893382352941176, 0.007352941176470588, 0.011029411764705883, 0.0703125, 0.48943014705882354], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/GATase_3.gap.json b/pfam_gap_rates/GATase_3.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f5e5e5c09c4db4707fdea374ccccf8fca1e933ef
--- /dev/null
+++ b/pfam_gap_rates/GATase_3.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/GDI.gap.json b/pfam_gap_rates/GDI.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..76d7bfb30ecf4e5a481386a87109f2e578674802
--- /dev/null
+++ b/pfam_gap_rates/GDI.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/GDNF.gap.json b/pfam_gap_rates/GDNF.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e63990a8bfae34ef920471b7ce4af2281700c1c1
--- /dev/null
+++ b/pfam_gap_rates/GDNF.gap.json
@@ -0,0 +1 @@
+{"family": "GDNF", "n_seqs": 292, "length": 107, "gap_rates": [0.03767123287671233, 0.03424657534246575, 0.03424657534246575, 0.030821917808219176, 0.030821917808219176, 0.0273972602739726, 0.0273972602739726, 0.0273972602739726, 0.023972602739726026, 0.023972602739726026, 0.02054794520547945, 0.02054794520547945, 0.02054794520547945, 0.02054794520547945, 0.017123287671232876, 0.0136986301369863, 0.00684931506849315, 0.00684931506849315, 0.00684931506849315, 0.1917808219178082, 0.00684931506849315, 0.00684931506849315, 0.00684931506849315, 0.00684931506849315, 0.00684931506849315, 0.00684931506849315, 0.00684931506849315, 0.00684931506849315, 0.003424657534246575, 0.773972602739726, 0.6917808219178082, 0.1095890410958904, 0.0684931506849315, 0.017123287671232876, 0.06164383561643835, 0.1267123287671233, 0.4897260273972603, 0.4520547945205479, 0.5376712328767124, 0.886986301369863, 0.9452054794520548, 0.9452054794520548, 0.9486301369863014, 0.9452054794520548, 0.9417808219178082, 0.8698630136986302, 0.4828767123287671, 0.386986301369863, 0.22602739726027396, 0.0136986301369863, 0.010273972602739725, 0.00684931506849315, 0.00684931506849315, 0.010273972602739725, 0.010273972602739725, 0.00684931506849315, 0.7945205479452054, 0.7945205479452054, 0.797945205479452, 0.7945205479452054, 0.7945205479452054, 0.7945205479452054, 0.4794520547945205, 0.476027397260274, 0.476027397260274, 0.4006849315068493, 0.3938356164383562, 0.3698630136986301, 0.22945205479452055, 0.0136986301369863, 0.010273972602739725, 0.010273972602739725, 0.010273972602739725, 0.010273972602739725, 0.010273972602739725, 0.9486301369863014, 0.9486301369863014, 0.010273972602739725, 0.010273972602739725, 0.010273972602739725, 0.010273972602739725, 0.010273972602739725, 0.010273972602739725, 0.010273972602739725, 0.2842465753424658, 0.3184931506849315, 0.3527397260273973, 0.3116438356164384, 0.19863013698630136, 0.017123287671232876, 0.02054794520547945, 0.8767123287671232, 0.017123287671232876, 0.0136986301369863, 0.0136986301369863, 0.0136986301369863, 0.0136986301369863, 0.02054794520547945, 0.02054794520547945, 0.023972602739726026, 0.0273972602739726, 0.0273972602739726, 0.10273972602739725, 0.18835616438356165, 0.2842465753424658, 0.2910958904109589, 0.3013698630136986], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/GFA.gap.json b/pfam_gap_rates/GFA.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..6fe9023b92296313bdf8c1efd3b2cca06f03cde5
--- /dev/null
+++ b/pfam_gap_rates/GFA.gap.json
@@ -0,0 +1 @@
+{"family": "GFA", "n_seqs": 2268, "length": 105, "gap_rates": [0.937389770723104, 0.11552028218694885, 0.07627865961199294, 0.06349206349206349, 0.059964726631393295, 0.05864197530864197, 0.05555555555555555, 0.05246913580246913, 0.05114638447971781, 0.05202821869488536, 0.053791887125220456, 0.05952380952380952, 0.08245149911816578, 0.2583774250440917, 0.2239858906525573, 0.20811287477954143, 0.16005291005291006, 0.04365079365079365, 0.045414462081128745, 0.045414462081128745, 0.03835978835978836, 0.03439153439153439, 0.03306878306878307, 0.040123456790123455, 0.031746031746031744, 0.026455026455026454, 0.022486772486772486, 0.024250440917107582, 0.25132275132275134, 0.04673721340388007, 0.03527336860670194, 0.025573192239858905, 0.5520282186948854, 0.927689594356261, 0.486331569664903, 0.02204585537918871, 0.024250440917107582, 0.021164021164021163, 0.0291005291005291, 0.03306878306878307, 0.04938271604938271, 0.3800705467372134, 0.5925925925925926, 0.9387125220458554, 0.8567019400352733, 0.5423280423280423, 0.4964726631393298, 0.06305114638447971, 0.033950617283950615, 0.03130511463844797, 0.031746031746031744, 0.031746031746031744, 0.010582010582010581, 0.010141093474426807, 0.010582010582010581, 0.010141093474426807, 0.010141093474426807, 0.010582010582010581, 0.011022927689594356, 0.011904761904761904, 0.012345679012345678, 0.012345679012345678, 0.012345679012345678, 0.013227513227513227, 0.01455026455026455, 0.053791887125220456, 0.27116402116402116, 0.8813932980599647, 0.939594356261023, 0.794973544973545, 0.10714285714285714, 0.08862433862433862, 0.045414462081128745, 0.05114638447971781, 0.0582010582010582, 0.06393298059964726, 0.06393298059964726, 0.06525573192239859, 0.0718694885361552, 0.07539682539682539, 0.07760141093474426, 0.07892416225749559, 0.07936507936507936, 0.07936507936507936, 0.08156966490299823, 0.08994708994708994, 0.10449735449735449, 0.1490299823633157, 0.8412698412698413, 0.9417989417989417, 0.9025573192239859, 0.8033509700176367, 0.20679012345679013, 0.2482363315696649, 0.26807760141093473, 0.2826278659611993, 0.2993827160493827, 0.318342151675485, 0.34656084656084657, 0.3562610229276896, 0.3800705467372134, 0.41181657848324515, 0.46296296296296297, 0.5903880070546738, 0.9334215167548501], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/GH43_C.gap.json b/pfam_gap_rates/GH43_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..96a69e43b4cfb35c17f4a1db645bacb5ed8b51f8
--- /dev/null
+++ b/pfam_gap_rates/GH43_C.gap.json
@@ -0,0 +1 @@
+{"family": "GH43_C", "n_seqs": 126, "length": 141, "gap_rates": [0.15873015873015872, 0.07936507936507936, 0.07142857142857142, 0.07142857142857142, 0.06349206349206349, 0.06349206349206349, 0.06349206349206349, 0.047619047619047616, 0.023809523809523808, 0.015873015873015872, 0.015873015873015872, 0.7222222222222222, 0.9444444444444444, 0.6825396825396826, 0.007936507936507936, 0.007936507936507936, 0.007936507936507936, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.8809523809523809, 0.8968253968253969, 0.9285714285714286, 0.9444444444444444, 0.9365079365079365, 0.8968253968253969, 0.8888888888888888, 0.8809523809523809, 0.03968253968253968, 0.15873015873015872, 0.11904761904761904, 0.10317460317460317, 0.09523809523809523, 0.015873015873015872, 0.7301587301587301, 0.8650793650793651, 0.873015873015873, 0.9285714285714286, 0.9285714285714286, 0.9365079365079365, 0.9444444444444444, 0.9365079365079365, 0.9285714285714286, 0.9285714285714286, 0.8888888888888888, 0.873015873015873, 0.7380952380952381, 0.6984126984126984, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.031746031746031744, 0.0, 0.0, 0.007936507936507936, 0.007936507936507936, 0.0, 0.0, 0.0, 0.0, 0.7857142857142857, 0.9444444444444444, 0.031746031746031744, 0.015873015873015872, 0.007936507936507936, 0.0, 0.0, 0.0, 0.0, 0.9444444444444444, 0.5714285714285714, 0.03968253968253968, 0.0, 0.015873015873015872, 0.031746031746031744, 0.031746031746031744, 0.031746031746031744, 0.015873015873015872, 0.007936507936507936, 0.031746031746031744, 0.031746031746031744, 0.9285714285714286, 0.007936507936507936, 0.015873015873015872, 0.007936507936507936, 0.9206349206349206, 0.9365079365079365, 0.9365079365079365, 0.9206349206349206, 0.007936507936507936, 0.031746031746031744, 0.05555555555555555, 0.031746031746031744, 0.9206349206349206, 0.007936507936507936, 0.007936507936507936, 0.007936507936507936, 0.007936507936507936, 0.007936507936507936, 0.007936507936507936, 0.007936507936507936, 0.007936507936507936, 0.007936507936507936, 0.007936507936507936, 0.0873015873015873, 0.9365079365079365, 0.7857142857142857, 0.007936507936507936, 0.007936507936507936, 0.007936507936507936, 0.007936507936507936, 0.007936507936507936, 0.007936507936507936, 0.007936507936507936, 0.007936507936507936, 0.007936507936507936, 0.007936507936507936, 0.015873015873015872, 0.015873015873015872, 0.10317460317460317, 0.023809523809523808, 0.031746031746031744, 0.031746031746031744, 0.03968253968253968, 0.0873015873015873], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/GHL6.gap.json b/pfam_gap_rates/GHL6.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..0d400fa41d80fb0bdca1fb575cded1588a427248
--- /dev/null
+++ b/pfam_gap_rates/GHL6.gap.json
@@ -0,0 +1 @@
+{"family": "GHL6", "n_seqs": 122, "length": 159, "gap_rates": [0.4344262295081967, 0.28688524590163933, 0.23770491803278687, 0.18032786885245902, 0.1557377049180328, 0.09836065573770492, 0.09016393442622951, 0.08196721311475409, 0.06557377049180328, 0.03278688524590164, 0.03278688524590164, 0.02459016393442623, 0.00819672131147541, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.09836065573770492, 0.09016393442622951, 0.05737704918032787, 0.36885245901639346, 0.36065573770491804, 0.07377049180327869, 0.0, 0.8770491803278688, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.4918032786885246, 0.45901639344262296, 0.00819672131147541, 0.0, 0.0, 0.9016393442622951, 0.8934426229508197, 0.0, 0.0, 0.0, 0.00819672131147541, 0.9344262295081968, 0.9262295081967213, 0.00819672131147541, 0.5819672131147541, 0.0, 0.9262295081967213, 0.9344262295081968, 0.9262295081967213, 0.8934426229508197, 0.0, 0.0, 0.00819672131147541, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.5327868852459017, 0.0, 0.0, 0.0, 0.00819672131147541, 0.00819672131147541, 0.00819672131147541, 0.00819672131147541, 0.00819672131147541, 0.00819672131147541, 0.00819672131147541, 0.0, 0.00819672131147541, 0.00819672131147541, 0.00819672131147541, 0.00819672131147541, 0.00819672131147541, 0.00819672131147541, 0.00819672131147541, 0.09836065573770492, 0.08196721311475409, 0.3524590163934426, 0.680327868852459, 0.9016393442622951, 0.9098360655737705, 0.9344262295081968, 0.9016393442622951, 0.8852459016393442, 0.6229508196721312, 0.5, 0.45901639344262296, 0.319672131147541, 0.26229508196721313, 0.1557377049180328, 0.08196721311475409, 0.08196721311475409, 0.09836065573770492, 0.20491803278688525, 0.14754098360655737, 0.7950819672131147, 0.04918032786885246, 0.040983606557377046, 0.01639344262295082, 0.9344262295081968, 0.00819672131147541, 0.00819672131147541, 0.00819672131147541, 0.00819672131147541, 0.00819672131147541, 0.00819672131147541, 0.00819672131147541, 0.00819672131147541, 0.7295081967213115, 0.00819672131147541, 0.9426229508196722, 0.00819672131147541, 0.00819672131147541, 0.00819672131147541, 0.00819672131147541, 0.00819672131147541, 0.00819672131147541, 0.9262295081967213, 0.00819672131147541, 0.00819672131147541, 0.00819672131147541, 0.03278688524590164, 0.02459016393442623, 0.00819672131147541, 0.00819672131147541, 0.9426229508196722, 0.9016393442622951, 0.00819672131147541, 0.00819672131147541, 0.01639344262295082, 0.02459016393442623, 0.040983606557377046, 0.09836065573770492, 0.10655737704918032, 0.12295081967213115, 0.3770491803278688], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/GIDA_assoc.gap.json b/pfam_gap_rates/GIDA_assoc.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..5bcd2f90837844180204b906e1e61eda0840bd0d
--- /dev/null
+++ b/pfam_gap_rates/GIDA_assoc.gap.json
@@ -0,0 +1 @@
+{"family": "GIDA_assoc", "n_seqs": 1943, "length": 244, "gap_rates": [0.3849716932578487, 0.10138960370560988, 0.027792074112197633, 0.02573340195573855, 0.024704065877509007, 0.024704065877509007, 0.024704065877509007, 0.023674729799279464, 0.023674729799279464, 0.023160061760164694, 0.023160061760164694, 0.023674729799279464, 0.022645393721049924, 0.022645393721049924, 0.022645393721049924, 0.022645393721049924, 0.022645393721049924, 0.023160061760164694, 0.023160061760164694, 0.02213072568193515, 0.02213072568193515, 0.02161605764282038, 0.02161605764282038, 0.02110138960370561, 0.02110138960370561, 0.02110138960370561, 0.02110138960370561, 0.018013381369016986, 0.02007205352547607, 0.02007205352547607, 0.02110138960370561, 0.02007205352547607, 0.02007205352547607, 0.02007205352547607, 0.02007205352547607, 0.02007205352547607, 0.0195573854863613, 0.0195573854863613, 0.019042717447246525, 0.02007205352547607, 0.0195573854863613, 0.019042717447246525, 0.019042717447246525, 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\ No newline at end of file
diff --git a/pfam_gap_rates/GIDE.gap.json b/pfam_gap_rates/GIDE.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..6066445385c2b03929bcc84bdd749d3cc6c9e85e
--- /dev/null
+++ b/pfam_gap_rates/GIDE.gap.json
@@ -0,0 +1 @@
+{"family": "GIDE", "n_seqs": 239, "length": 183, "gap_rates": [0.9497907949790795, 0.7656903765690377, 0.7154811715481172, 0.6569037656903766, 0.5899581589958159, 0.5397489539748954, 0.6192468619246861, 0.497907949790795, 0.46443514644351463, 0.42677824267782427, 0.8200836820083682, 0.9246861924686193, 0.7489539748953975, 0.36401673640167365, 0.2384937238493724, 0.19246861924686193, 0.1506276150627615, 0.13807531380753138, 0.11715481171548117, 0.11297071129707113, 0.09205020920502092, 0.08786610878661087, 0.08786610878661087, 0.08786610878661087, 0.08786610878661087, 0.07112970711297072, 0.058577405857740586, 0.058577405857740586, 0.058577405857740586, 0.058577405857740586, 0.058577405857740586, 0.058577405857740586, 0.058577405857740586, 0.058577405857740586, 0.05439330543933055, 0.05439330543933055, 0.05439330543933055, 0.06694560669456066, 0.7531380753138075, 0.7824267782426778, 0.8451882845188284, 0.7573221757322176, 0.7489539748953975, 0.06276150627615062, 0.9079497907949791, 0.05439330543933055, 0.0502092050209205, 0.0502092050209205, 0.0502092050209205, 0.0502092050209205, 0.37656903765690375, 0.36401673640167365, 0.05439330543933055, 0.05439330543933055, 0.04602510460251046, 0.04184100418410042, 0.04184100418410042, 0.08368200836820083, 0.08368200836820083, 0.05439330543933055, 0.0502092050209205, 0.05439330543933055, 0.06276150627615062, 0.07112970711297072, 0.06276150627615062, 0.04602510460251046, 0.04184100418410042, 0.058577405857740586, 0.895397489539749, 0.9246861924686193, 0.9205020920502092, 0.895397489539749, 0.0794979079497908, 0.07112970711297072, 0.08786610878661087, 0.0502092050209205, 0.0502092050209205, 0.8326359832635983, 0.07531380753138076, 0.058577405857740586, 0.07531380753138076, 0.06694560669456066, 0.05439330543933055, 0.05439330543933055, 0.04602510460251046, 0.04184100418410042, 0.07112970711297072, 0.06694560669456066, 0.06694560669456066, 0.07531380753138076, 0.058577405857740586, 0.05439330543933055, 0.8284518828451883, 0.9456066945606695, 0.8828451882845189, 0.803347280334728, 0.7447698744769874, 0.702928870292887, 0.7782426778242678, 0.895397489539749, 0.9330543933054394, 0.8326359832635983, 0.7573221757322176, 0.08368200836820083, 0.0794979079497908, 0.05439330543933055, 0.05439330543933055, 0.02092050209205021, 0.02092050209205021, 0.02092050209205021, 0.02092050209205021, 0.02092050209205021, 0.016736401673640166, 0.016736401673640166, 0.016736401673640166, 0.016736401673640166, 0.016736401673640166, 0.016736401673640166, 0.016736401673640166, 0.016736401673640166, 0.016736401673640166, 0.016736401673640166, 0.016736401673640166, 0.016736401673640166, 0.016736401673640166, 0.02092050209205021, 0.29707112970711297, 0.04184100418410042, 0.06694560669456066, 0.09623430962343096, 0.17573221757322174, 0.22594142259414227, 0.9288702928870293, 0.19246861924686193, 0.19246861924686193, 0.18410041841004185, 0.18410041841004185, 0.18410041841004185, 0.18410041841004185, 0.1799163179916318, 0.1799163179916318, 0.1799163179916318, 0.4560669456066946, 0.6192468619246861, 0.6108786610878661, 0.18410041841004185, 0.18410041841004185, 0.18828451882845187, 0.18828451882845187, 0.19246861924686193, 0.19246861924686193, 0.19246861924686193, 0.20502092050209206, 0.20502092050209206, 0.20502092050209206, 0.20920502092050208, 0.20920502092050208, 0.20920502092050208, 0.20920502092050208, 0.20920502092050208, 0.20920502092050208, 0.21338912133891214, 0.24267782426778242, 0.24686192468619247, 0.24267782426778242, 0.24267782426778242, 0.24267782426778242, 0.24267782426778242, 0.24267782426778242, 0.24267782426778242, 0.24267782426778242, 0.24686192468619247, 0.2510460251046025, 0.2510460251046025, 0.2510460251046025, 0.2594142259414226, 0.26359832635983266, 0.26359832635983266, 0.26778242677824265, 0.8158995815899581, 0.3891213389121339, 0.5815899581589958, 0.7238493723849372], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/GLTT.gap.json b/pfam_gap_rates/GLTT.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..52c6278f5973a0c0672f10d235f3c214fdaa5eed
--- /dev/null
+++ b/pfam_gap_rates/GLTT.gap.json
@@ -0,0 +1 @@
+{"family": "GLTT", "n_seqs": 121, "length": 28, "gap_rates": [0.3884297520661157, 0.21487603305785125, 0.1487603305785124, 0.04132231404958678, 0.03305785123966942, 0.03305785123966942, 0.024793388429752067, 0.008264462809917356, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.008264462809917356, 0.01652892561983471, 0.04132231404958678, 0.0743801652892562, 0.14049586776859505, 0.4049586776859504], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/GN3L_Grn1.gap.json b/pfam_gap_rates/GN3L_Grn1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..7823d2e90d5f72a8a67e1800510baa1e2fc27d45
--- /dev/null
+++ b/pfam_gap_rates/GN3L_Grn1.gap.json
@@ -0,0 +1 @@
+{"family": "GN3L_Grn1", "n_seqs": 316, "length": 78, "gap_rates": [0.33544303797468356, 0.09177215189873418, 0.08227848101265822, 0.08227848101265822, 0.08227848101265822, 0.08227848101265822, 0.08227848101265822, 0.07911392405063292, 0.07911392405063292, 0.06962025316455696, 0.06645569620253164, 0.060126582278481014, 0.060126582278481014, 0.060126582278481014, 0.060126582278481014, 0.060126582278481014, 0.060126582278481014, 0.060126582278481014, 0.060126582278481014, 0.060126582278481014, 0.056962025316455694, 0.05379746835443038, 0.056962025316455694, 0.05379746835443038, 0.04746835443037975, 0.04746835443037975, 0.05379746835443038, 0.04430379746835443, 0.8829113924050633, 0.9018987341772152, 0.7784810126582279, 0.26582278481012656, 0.14240506329113925, 0.04430379746835443, 0.006329113924050633, 0.006329113924050633, 0.006329113924050633, 0.0031645569620253164, 0.0031645569620253164, 0.0031645569620253164, 0.0031645569620253164, 0.0031645569620253164, 0.006329113924050633, 0.0031645569620253164, 0.015822784810126583, 0.006329113924050633, 0.006329113924050633, 0.006329113924050633, 0.006329113924050633, 0.006329113924050633, 0.006329113924050633, 0.006329113924050633, 0.006329113924050633, 0.006329113924050633, 0.00949367088607595, 0.00949367088607595, 0.00949367088607595, 0.012658227848101266, 0.012658227848101266, 0.03164556962025317, 0.03164556962025317, 0.03164556962025317, 0.03481012658227848, 0.04113924050632911, 0.04430379746835443, 0.04430379746835443, 0.05063291139240506, 0.05379746835443038, 0.060126582278481014, 0.060126582278481014, 0.0759493670886076, 0.08227848101265822, 0.09177215189873418, 0.11075949367088607, 0.18670886075949367, 0.2468354430379747, 0.4050632911392405, 0.6962025316455697], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/GNVR.gap.json b/pfam_gap_rates/GNVR.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..8456bcf6018a49d1049ad13359bfe4aef59a5dbd
--- /dev/null
+++ b/pfam_gap_rates/GNVR.gap.json
@@ -0,0 +1 @@
+{"family": "GNVR", "n_seqs": 1200, "length": 87, "gap_rates": [0.9333333333333333, 0.8325, 0.6875, 0.6458333333333334, 0.61, 0.5725, 0.5266666666666666, 0.9116666666666666, 0.36083333333333334, 0.26416666666666666, 0.23583333333333334, 0.22166666666666668, 0.2175, 0.2125, 0.2075, 0.19833333333333333, 0.1925, 0.1875, 0.18583333333333332, 0.18333333333333332, 0.1825, 0.18, 0.17916666666666667, 0.17666666666666667, 0.19083333333333333, 0.175, 0.1625, 0.1575, 0.15, 0.11166666666666666, 0.08583333333333333, 0.07416666666666667, 0.06583333333333333, 0.06416666666666666, 0.060833333333333336, 0.9208333333333333, 0.945, 0.8816666666666667, 0.04833333333333333, 0.035833333333333335, 0.03, 0.0225, 0.016666666666666666, 0.018333333333333333, 0.0125, 0.004166666666666667, 0.004166666666666667, 0.0025, 0.0025, 0.0025, 0.0016666666666666668, 0.0016666666666666668, 0.0016666666666666668, 0.0016666666666666668, 0.02666666666666667, 0.006666666666666667, 0.9341666666666667, 0.0016666666666666668, 0.0016666666666666668, 0.0025, 0.0025, 0.0025, 0.0016666666666666668, 0.0025, 0.004166666666666667, 0.004166666666666667, 0.0033333333333333335, 0.0033333333333333335, 0.004166666666666667, 0.0033333333333333335, 0.0033333333333333335, 0.009166666666666667, 0.005833333333333334, 0.004166666666666667, 0.004166666666666667, 0.004166666666666667, 0.005, 0.006666666666666667, 0.008333333333333333, 0.01, 0.015, 0.035833333333333335, 0.065, 0.1375, 0.5683333333333334, 0.6558333333333334, 0.9158333333333334], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/GPR_Gpa2_C.gap.json b/pfam_gap_rates/GPR_Gpa2_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..8db4f3f33393e07527d582a93ca2421760c7d1fb
--- /dev/null
+++ b/pfam_gap_rates/GPR_Gpa2_C.gap.json
@@ -0,0 +1 @@
+{"family": "GPR_Gpa2_C", "n_seqs": 133, "length": 79, "gap_rates": [0.8646616541353384, 0.6165413533834586, 0.37593984962406013, 0.2857142857142857, 0.21804511278195488, 0.16541353383458646, 0.14285714285714285, 0.12781954887218044, 0.12030075187969924, 0.11278195488721804, 0.05263157894736842, 0.015037593984962405, 0.007518796992481203, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.007518796992481203, 0.3609022556390977, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.007518796992481203, 0.45864661654135336, 0.42105263157894735, 0.9473684210526315, 0.9473684210526315, 0.9323308270676691, 0.10526315789473684, 0.03759398496240601, 0.007518796992481203, 0.007518796992481203, 0.007518796992481203, 0.18796992481203006, 0.007518796992481203, 0.007518796992481203, 0.007518796992481203, 0.0, 0.0, 0.0, 0.015037593984962405, 0.0, 0.0, 0.0, 0.015037593984962405, 0.015037593984962405, 0.007518796992481203, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.015037593984962405, 0.03759398496240601, 0.06015037593984962, 0.07518796992481203, 0.09774436090225563, 0.24812030075187969, 0.43609022556390975, 0.5263157894736842, 0.6992481203007519], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/GRIM-19.gap.json b/pfam_gap_rates/GRIM-19.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d6e078da915283cd0b7b06d4c4a8c7c1f31d93c4
--- /dev/null
+++ b/pfam_gap_rates/GRIM-19.gap.json
@@ -0,0 +1 @@
+{"family": "GRIM-19", "n_seqs": 274, "length": 131, "gap_rates": [0.9197080291970803, 0.4927007299270073, 0.15693430656934307, 0.14233576642335766, 0.13503649635036497, 0.09854014598540146, 0.09854014598540146, 0.09854014598540146, 0.09854014598540146, 0.10583941605839416, 0.0948905109489051, 0.09124087591240876, 0.09124087591240876, 0.08759124087591241, 0.08394160583941605, 0.08394160583941605, 0.08394160583941605, 0.072992700729927, 0.072992700729927, 0.072992700729927, 0.072992700729927, 0.072992700729927, 0.072992700729927, 0.072992700729927, 0.07664233576642336, 0.08759124087591241, 0.06934306569343066, 0.06934306569343066, 0.06934306569343066, 0.072992700729927, 0.06569343065693431, 0.06934306569343066, 0.072992700729927, 0.072992700729927, 0.06934306569343066, 0.06934306569343066, 0.06569343065693431, 0.06569343065693431, 0.05474452554744526, 0.051094890510948905, 0.04744525547445255, 0.04744525547445255, 0.04744525547445255, 0.04744525547445255, 0.04744525547445255, 0.04744525547445255, 0.04744525547445255, 0.043795620437956206, 0.04744525547445255, 0.051094890510948905, 0.051094890510948905, 0.058394160583941604, 0.058394160583941604, 0.06204379562043796, 0.05474452554744526, 0.051094890510948905, 0.043795620437956206, 0.040145985401459854, 0.043795620437956206, 0.043795620437956206, 0.043795620437956206, 0.043795620437956206, 0.040145985401459854, 0.040145985401459854, 0.040145985401459854, 0.043795620437956206, 0.040145985401459854, 0.040145985401459854, 0.040145985401459854, 0.040145985401459854, 0.040145985401459854, 0.040145985401459854, 0.040145985401459854, 0.043795620437956206, 0.043795620437956206, 0.043795620437956206, 0.040145985401459854, 0.032846715328467155, 0.040145985401459854, 0.043795620437956206, 0.043795620437956206, 0.040145985401459854, 0.040145985401459854, 0.043795620437956206, 0.043795620437956206, 0.043795620437956206, 0.051094890510948905, 0.06204379562043796, 0.06204379562043796, 0.06204379562043796, 0.06569343065693431, 0.06934306569343066, 0.06934306569343066, 0.06934306569343066, 0.11678832116788321, 0.20437956204379562, 0.26277372262773724, 0.2773722627737226, 0.27007299270072993, 0.27007299270072993, 0.2664233576642336, 0.2773722627737226, 0.2846715328467153, 0.7664233576642335, 0.7664233576642335, 0.7262773722627737, 0.7043795620437956, 0.28832116788321166, 0.2737226277372263, 0.2773722627737226, 0.2737226277372263, 0.27007299270072993, 0.27007299270072993, 0.8138686131386861, 0.7664233576642335, 0.8029197080291971, 0.3357664233576642, 0.3029197080291971, 0.3175182481751825, 0.32116788321167883, 0.3357664233576642, 0.35766423357664234, 0.38686131386861317, 0.48905109489051096, 0.6021897810218978, 0.6313868613138686, 0.6423357664233577, 0.7372262773722628, 0.7445255474452555, 0.7591240875912408, 0.8102189781021898], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/GTP-bdg_M.gap.json b/pfam_gap_rates/GTP-bdg_M.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..3543b649d9a132d9072c63f90131aee47a805d70
--- /dev/null
+++ b/pfam_gap_rates/GTP-bdg_M.gap.json
@@ -0,0 +1 @@
+{"family": "GTP-bdg_M", "n_seqs": 1877, "length": 90, "gap_rates": [0.05114544485881726, 0.013319126265316995, 0.012786361214704315, 0.012786361214704315, 0.012786361214704315, 0.012786361214704315, 0.011188066062866276, 0.011188066062866276, 0.010122535961640916, 0.009589770911028236, 0.007991475759190196, 0.007991475759190196, 0.006925945657964837, 0.006925945657964837, 0.006925945657964837, 0.005860415556739478, 0.005860415556739478, 0.005860415556739478, 0.005327650506126798, 0.005327650506126798, 0.004794885455514118, 0.004794885455514118, 0.005327650506126798, 0.02290889717634523, 0.010122535961640916, 0.009057005860415556, 0.008524240809802876, 0.007458710708577517, 0.006925945657964837, 0.006393180607352157, 0.004262120404901438, 0.002663825253063399, 0.005327650506126798, 0.015982951518380393, 0.024507192328183273, 0.02770378263185935, 0.8604155567394779, 0.8614810868407032, 0.8700053276505061, 0.9254128929142248, 0.8716036228023442, 0.8646776771443794, 0.8604155567394779, 0.8433670751198722, 0.0500799147575919, 0.014917421417155035, 0.8939797549280767, 0.9259456579648375, 0.728822589238146, 0.012253596164091636, 0.011720831113478956, 0.006925945657964837, 0.006393180607352157, 0.005860415556739478, 0.005327650506126798, 0.004794885455514118, 0.004794885455514118, 0.010655301012253596, 0.004794885455514118, 0.004794885455514118, 0.005327650506126798, 0.005860415556739478, 0.005860415556739478, 0.005327650506126798, 0.005327650506126798, 0.005860415556739478, 0.005860415556739478, 0.005860415556739478, 0.006925945657964837, 0.007991475759190196, 0.008524240809802876, 0.008524240809802876, 0.008524240809802876, 0.008524240809802876, 0.008524240809802876, 0.008524240809802876, 0.009057005860415556, 0.009589770911028236, 0.009589770911028236, 0.009589770911028236, 0.009589770911028236, 0.010122535961640916, 0.010122535961640916, 0.010122535961640916, 0.010122535961640916, 0.010655301012253596, 0.012253596164091636, 0.015982951518380393, 0.018114011720831113, 0.02503995737879595], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Gag_p24.gap.json b/pfam_gap_rates/Gag_p24.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..7afebe1baf9bc2076ddafe31fe4a6cbb42fcbba7
--- /dev/null
+++ b/pfam_gap_rates/Gag_p24.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/GalP_UDP_transf.gap.json b/pfam_gap_rates/GalP_UDP_transf.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d6e23c387f73824f087391cb13ea7fc772e2e768
--- /dev/null
+++ b/pfam_gap_rates/GalP_UDP_transf.gap.json
@@ -0,0 +1 @@
+{"family": "GalP_UDP_transf", "n_seqs": 1197, "length": 261, "gap_rates": [0.9423558897243107, 0.8011695906432749, 0.7568922305764411, 0.7159565580618212, 0.6532999164578112, 0.6215538847117794, 0.6131996658312447, 0.8095238095238095, 0.7502088554720133, 0.6858813700918964, 0.37009189640768586, 0.2731829573934837, 0.39766081871345027, 0.2247284878863826, 0.22305764411027568, 0.22138680033416874, 0.21888053467000834, 0.2172096908939014, 0.21637426900584794, 0.21637426900584794, 0.21303258145363407, 0.21303258145363407, 0.21303258145363407, 0.2046783625730994, 0.835421888053467, 0.8404344193817878, 0.847953216374269, 0.8705096073517126, 0.8955722639933166, 0.948203842940685, 0.8780284043441938, 0.8546365914786967, 0.8429406850459482, 0.8395989974937343, 0.8320802005012531, 0.19131161236424393, 0.19883040935672514, 0.1946532999164578, 0.19047619047619047, 0.18546365914786966, 0.1796157059314954, 0.1746031746031746, 0.16624895572263992, 0.7794486215538847, 0.7660818713450293, 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\ No newline at end of file
diff --git a/pfam_gap_rates/Gelsolin.gap.json b/pfam_gap_rates/Gelsolin.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f4163421105f95b9c5a3a30acda8329457991b20
--- /dev/null
+++ b/pfam_gap_rates/Gelsolin.gap.json
@@ -0,0 +1 @@
+{"family": "Gelsolin", "n_seqs": 3738, "length": 92, "gap_rates": [0.8274478330658106, 0.6123595505617978, 0.4796682718031033, 0.33547351524879615, 0.25869448903156766, 0.20465489566613163, 0.1653290529695024, 0.1254681647940075, 0.08667736757624397, 0.06741573033707865, 0.050026752273943285, 0.03638309256286784, 0.027822364901016586, 0.021936864633493848, 0.020064205457463884, 0.017121455323702513, 0.014446227929373997, 0.013108614232209739, 0.012038523274478331, 0.011235955056179775, 0.009898341359015517, 0.009898341359015517, 0.009630818619582664, 0.009630818619582664, 0.009630818619582664, 0.006420545746388443, 0.622792937399679, 0.6487426431246656, 0.6701444622792937, 0.6760299625468165, 0.9491706795077581, 0.8630283574103799, 0.6725521669341894, 0.6559657570893526, 0.6452648475120385, 0.5791867308721241, 0.002140181915462814, 0.0016051364365971107, 0.001337613697164259, 0.001337613697164259, 0.0008025682182985554, 0.001070090957731407, 0.0018726591760299626, 0.002407704654895666, 0.0029427501337613697, 0.7413055109684323, 0.7225789192081327, 0.00454788657035848, 0.0072231139646869984, 0.008025682182985553, 0.00882825040128411, 0.011235955056179775, 0.012306046013911182, 0.016853932584269662, 0.019796682718031033, 0.021401819154628143, 0.03210272873194221, 0.03424291064740503, 0.04039593365436062, 0.0449438202247191, 0.049491706795077584, 0.0527019796682718, 0.05510968432316747, 0.058587479935794544, 0.7581594435527019, 0.8159443552701979, 0.8568753344034243, 0.7766185125735687, 0.6433921883360085, 0.46575708935259497, 0.13911182450508294, 0.13804173354735153, 0.18780096308186195, 0.1420545746388443, 0.14098448368111288, 0.14098448368111288, 0.1342964151952916, 0.13830925628678437, 0.14071696094168004, 0.15676832530765114, 0.15997859818084537, 0.27715355805243447, 0.18245050829320492, 0.19181380417335472, 0.20117710005350456, 0.22070626003210272, 0.24826110219368647, 0.2739432851792402, 0.30230069555912253, 0.3378812199036918, 0.364633493846977, 0.6340288924558587], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Glucan_synthase.gap.json b/pfam_gap_rates/Glucan_synthase.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..031f34a1d76f73a8f99095fc027704d3aa5120cc
--- /dev/null
+++ b/pfam_gap_rates/Glucan_synthase.gap.json
@@ -0,0 +1 @@
+{"family": "Glucan_synthase", "n_seqs": 973, "length": 895, "gap_rates": [0.8006166495375129, 0.47584789311408016, 0.44295991778006166, 0.4141829393627955, 0.408016443987667, 0.40082219938335045, 0.40082219938335045, 0.3977389516957862, 0.3977389516957862, 0.39671120246659813, 0.39671120246659813, 0.394655704008222, 0.394655704008222, 0.394655704008222, 0.3936279547790339, 0.3936279547790339, 0.3936279547790339, 0.3936279547790339, 0.39054470709146966, 0.39054470709146966, 0.3874614594039055, 0.3874614594039055, 0.3874614594039055, 0.3864337101747174, 0.3864337101747174, 0.3864337101747174, 0.3854059609455293, 0.38437821171634123, 0.38335046248715315, 0.3854059609455293, 0.3854059609455293, 0.38437821171634123, 0.38335046248715315, 0.38335046248715315, 0.38335046248715315, 0.3874614594039055, 0.39054470709146966, 0.3895169578622816, 0.39054470709146966, 0.3895169578622816, 0.3895169578622816, 0.3895169578622816, 0.3895169578622816, 0.3895169578622816, 0.38848920863309355, 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\ No newline at end of file
diff --git a/pfam_gap_rates/Glucos_trans_II.gap.json b/pfam_gap_rates/Glucos_trans_II.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..5228e7e962535fc7b96c34f5007e042d164c305c
--- /dev/null
+++ b/pfam_gap_rates/Glucos_trans_II.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/GlutR_N.gap.json b/pfam_gap_rates/GlutR_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..96abd263e779134bba0dac1b3f866e8410129334
--- /dev/null
+++ b/pfam_gap_rates/GlutR_N.gap.json
@@ -0,0 +1 @@
+{"family": "GlutR_N", "n_seqs": 1307, "length": 162, "gap_rates": [0.27850038255547055, 0.11935730680948738, 0.08416220351951033, 0.07804131599081866, 0.07804131599081866, 0.0665646518745218, 0.0558530986993114, 0.05432287681713849, 0.05432287681713849, 0.05279265493496557, 0.0504973221117062, 0.045906656465187455, 0.045141545524101, 0.04437643458301454, 0.045141545524101, 0.04437643458301454, 0.04284621270084162, 0.041315990818668706, 0.042081101759755164, 0.05814843152257077, 0.04896710022953328, 0.041315990818668706, 0.04361132364192808, 0.04055087987758225, 0.029839326702371844, 0.029839326702371844, 0.0252486610558531, 0.023718439173680182, 0.023718439173680182, 0.029839326702371844, 0.46212700841622034, 0.7804131599081867, 0.38485080336648814, 0.03289977046671767, 0.6128538638102525, 0.10252486610558531, 0.08339709257842387, 0.019127773527161437, 0.6817138485080336, 0.7192042846212701, 0.6618209640397857, 0.011476664116296864, 0.009946442234123947, 0.009181331293037491, 0.008416220351951033, 0.008416220351951033, 0.008416220351951033, 0.008416220351951033, 0.008416220351951033, 0.008416220351951033, 0.008416220351951033, 0.0076511094108645756, 0.0076511094108645756, 0.0076511094108645756, 0.008416220351951033, 0.01224177505738332, 0.020657995409334353, 0.018362662586074982, 0.04437643458301454, 0.0757459831675593, 0.18439173680183626, 0.4139250191277735, 0.8921193573068095, 0.9495026778882938, 0.9166029074215761, 0.8622800306044377, 0.3473603672532517, 0.15531752104055088, 0.05279265493496557, 0.035960214231063506, 0.023718439173680182, 0.0772762050497322, 0.07115531752104055, 0.06885998469778118, 0.046671767406273906, 0.035960214231063506, 0.07498087222647284, 0.0665646518745218, 0.06503442999234889, 0.03442999234889059, 0.16067329762815608, 0.9005355776587605, 0.9418515684774292, 0.9234889058913542, 0.19510328997704668, 0.12930374904361133, 0.014537107880642693, 0.017597551644988524, 0.016067329762815608, 0.013771996939556235, 0.01224177505738332, 0.009946442234123947, 0.0076511094108645756, 0.0076511094108645756, 0.0076511094108645756, 0.0076511094108645756, 0.0076511094108645756, 0.006885998469778117, 0.006885998469778117, 0.006885998469778117, 0.006885998469778117, 0.006885998469778117, 0.006885998469778117, 0.006885998469778117, 0.006885998469778117, 0.0076511094108645756, 0.0076511094108645756, 0.0076511094108645756, 0.0076511094108645756, 0.0076511094108645756, 0.0076511094108645756, 0.006885998469778117, 0.006885998469778117, 0.006885998469778117, 0.006885998469778117, 0.00612088752869166, 0.00612088752869166, 0.00612088752869166, 0.006885998469778117, 0.006885998469778117, 0.0076511094108645756, 0.0076511094108645756, 0.0076511094108645756, 0.0076511094108645756, 0.0076511094108645756, 0.008416220351951033, 0.009181331293037491, 0.009181331293037491, 0.009946442234123947, 0.009946442234123947, 0.009946442234123947, 0.010711553175210406, 0.011476664116296864, 0.013006885998469778, 0.015302218821729151, 0.015302218821729151, 0.016832440703902066, 0.016067329762815608, 0.019892884468247895, 0.015302218821729151, 0.013771996939556235, 0.013771996939556235, 0.014537107880642693, 0.013771996939556235, 0.013771996939556235, 0.013771996939556235, 0.013771996939556235, 0.013771996939556235, 0.013771996939556235, 0.014537107880642693, 0.014537107880642693, 0.014537107880642693, 0.016067329762815608, 0.016832440703902066, 0.017597551644988524, 0.018362662586074982, 0.019127773527161437, 0.019892884468247895, 0.020657995409334353, 0.030604437643458302, 0.057383320581484314, 0.135424636572303], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Glyco_hydro_100.gap.json b/pfam_gap_rates/Glyco_hydro_100.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..bb006309b5c8c7c0d06e8fa0b5b2a0fa75c8b4f6
--- /dev/null
+++ b/pfam_gap_rates/Glyco_hydro_100.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Glyco_hydro_127.gap.json b/pfam_gap_rates/Glyco_hydro_127.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..24277d3756c48b62c6988085830eb0af118fbd67
--- /dev/null
+++ b/pfam_gap_rates/Glyco_hydro_127.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Glyco_hydro_19.gap.json b/pfam_gap_rates/Glyco_hydro_19.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..738fa146ec31c579f7ddd4530cc75de68c062ae5
--- /dev/null
+++ b/pfam_gap_rates/Glyco_hydro_19.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Glyco_hydro_20.gap.json b/pfam_gap_rates/Glyco_hydro_20.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d0198a8aa0d78032a46b4c0a8fe99626ae9b1a22
--- /dev/null
+++ b/pfam_gap_rates/Glyco_hydro_20.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Glyco_hydro_20b.gap.json b/pfam_gap_rates/Glyco_hydro_20b.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..2aad3e3629f3dc29b53fe640531e112878edb506
--- /dev/null
+++ b/pfam_gap_rates/Glyco_hydro_20b.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Glyco_hydro_25.gap.json b/pfam_gap_rates/Glyco_hydro_25.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..448a063a15badd090ea1635ef0c0617d31564cff
--- /dev/null
+++ b/pfam_gap_rates/Glyco_hydro_25.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Glyco_hydro_26.gap.json b/pfam_gap_rates/Glyco_hydro_26.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..768851181bff25977f094a3006fdeb92d57516bd
--- /dev/null
+++ b/pfam_gap_rates/Glyco_hydro_26.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Glyco_hydro_28.gap.json b/pfam_gap_rates/Glyco_hydro_28.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..3d6fd24fbf8750c03cd865cd117bc4cce76285db
--- /dev/null
+++ b/pfam_gap_rates/Glyco_hydro_28.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Glyco_hydro_3.gap.json b/pfam_gap_rates/Glyco_hydro_3.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..6809ed179641f2dcc724bdd2aec5ad8437016d23
--- /dev/null
+++ b/pfam_gap_rates/Glyco_hydro_3.gap.json
@@ -0,0 +1 @@
+{"family": "Glyco_hydro_3", "n_seqs": 5000, "length": 378, "gap_rates": [0.803, 0.6994, 0.6704, 0.6574, 0.6516, 0.642, 0.6364, 0.6354, 0.6346, 0.6334, 0.6298, 0.633, 0.6208, 0.6868, 0.718, 0.6946, 0.8248, 0.863, 0.8976, 0.924, 0.9374, 0.948, 0.9316, 0.9136, 0.8822, 0.8372, 0.8184, 0.6764, 0.658, 0.5944, 0.5774, 0.5674, 0.5606, 0.5542, 0.5478, 0.543, 0.5408, 0.5386, 0.5372, 0.5348, 0.531, 0.5218, 0.5164, 0.5124, 0.4978, 0.4958, 0.4956, 0.4962, 0.5626, 0.6188, 0.6058, 0.8738, 0.9042, 0.9444, 0.933, 0.8946, 0.864, 0.592, 0.5806, 0.5732, 0.5508, 0.508, 0.4864, 0.4756, 0.4716, 0.4628, 0.4582, 0.4528, 0.4504, 0.4476, 0.445, 0.4414, 0.4356, 0.4328, 0.426, 0.422, 0.4114, 0.409, 0.5712, 0.4482, 0.3742, 0.3452, 0.316, 0.2558, 0.2258, 0.2216, 0.2202, 0.2128, 0.192, 0.1872, 0.1862, 0.185, 0.1818, 0.1764, 0.1742, 0.172, 0.3982, 0.305, 0.2114, 0.1926, 0.2092, 0.273, 0.8678, 0.5676, 0.0806, 0.0742, 0.0708, 0.0698, 0.0692, 0.0668, 0.0652, 0.0652, 0.0642, 0.0626, 0.0648, 0.066, 0.0648, 0.0616, 0.0618, 0.0608, 0.9182, 0.9258, 0.9382, 0.9356, 0.9228, 0.9108, 0.0596, 0.0596, 0.0586, 0.0576, 0.0572, 0.0558, 0.0552, 0.0554, 0.0538, 0.0528, 0.0534, 0.0526, 0.052, 0.052, 0.0516, 0.0516, 0.9456, 0.946, 0.942, 0.052, 0.0538, 0.0626, 0.0586, 0.0552, 0.0444, 0.0444, 0.044, 0.0438, 0.0428, 0.0434, 0.9356, 0.044, 0.0438, 0.0424, 0.0422, 0.0426, 0.0444, 0.044, 0.0592, 0.7738, 0.045, 0.044, 0.043, 0.0424, 0.0426, 0.0416, 0.0408, 0.041, 0.0406, 0.0408, 0.0408, 0.0412, 0.041, 0.0414, 0.0418, 0.041, 0.0418, 0.0718, 0.0418, 0.0406, 0.04, 0.04, 0.0396, 0.0406, 0.04, 0.04, 0.0496, 0.6804, 0.687, 0.7756, 0.8854, 0.9112, 0.94, 0.9456, 0.926, 0.8998, 0.854, 0.7086, 0.684, 0.6594, 0.0418, 0.0418, 0.042, 0.0414, 0.041, 0.0414, 0.0416, 0.0418, 0.0424, 0.0428, 0.0432, 0.1986, 0.5786, 0.538, 0.1504, 0.0506, 0.0502, 0.0492, 0.0504, 0.05, 0.0508, 0.05, 0.0508, 0.0494, 0.0492, 0.0482, 0.05, 0.0928, 0.064, 0.0604, 0.0462, 0.0456, 0.0456, 0.0458, 0.05, 0.0472, 0.042, 0.0406, 0.0402, 0.04, 0.0398, 0.0402, 0.0422, 0.046, 0.0558, 0.611, 0.0492, 0.046, 0.0438, 0.0444, 0.0438, 0.0736, 0.065, 0.0408, 0.0406, 0.0408, 0.6958, 0.6928, 0.6922, 0.0456, 0.0452, 0.0422, 0.0438, 0.0434, 0.0438, 0.0428, 0.8608, 0.9376, 0.941, 0.9124, 0.7454, 0.0428, 0.042, 0.042, 0.0412, 0.041, 0.0424, 0.0446, 0.0412, 0.0434, 0.1136, 0.0434, 0.042, 0.0442, 0.0454, 0.044, 0.0422, 0.043, 0.0418, 0.0418, 0.0428, 0.043, 0.0428, 0.0442, 0.0444, 0.0452, 0.0452, 0.045, 0.0458, 0.285, 0.2924, 0.2612, 0.2456, 0.2548, 0.2594, 0.2814, 0.2916, 0.271, 0.269, 0.67, 0.7928, 0.7348, 0.6418, 0.1984, 0.1872, 0.1696, 0.1464, 0.1178, 0.0972, 0.0892, 0.0852, 0.0886, 0.0942, 0.0778, 0.076, 0.0778, 0.078, 0.0866, 0.101, 0.1084, 0.1026, 0.093, 0.0942, 0.0978, 0.106, 0.2208, 0.4902, 0.3738, 0.7712, 0.8736, 0.9224, 0.893, 0.8058, 0.7526, 0.2702, 0.1362, 0.1158, 0.1174, 0.1216, 0.1246, 0.1288, 0.1346, 0.142, 0.1464, 0.1518, 0.1564, 0.1698, 0.1702, 0.1694, 0.1704, 0.1714, 0.173, 0.1752, 0.1788, 0.182, 0.187, 0.1962, 0.211, 0.235, 0.2684, 0.4528, 0.774], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Glyco_hydro_39.gap.json b/pfam_gap_rates/Glyco_hydro_39.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b96d3fbe8e9cbdf51eb408e7e3445a12b32892c5
--- /dev/null
+++ b/pfam_gap_rates/Glyco_hydro_39.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Glyco_hydro_65m.gap.json b/pfam_gap_rates/Glyco_hydro_65m.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..3da3d225308281d687fd09a1134ae4aa2763181f
--- /dev/null
+++ b/pfam_gap_rates/Glyco_hydro_65m.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Glyco_hydro_67M.gap.json b/pfam_gap_rates/Glyco_hydro_67M.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f3a5688359e7aea6d967b955893fc4f41a601b71
--- /dev/null
+++ b/pfam_gap_rates/Glyco_hydro_67M.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Glyco_hydro_88.gap.json b/pfam_gap_rates/Glyco_hydro_88.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..eba3c5709f812e93b0093e180d71cb1e9c87a054
--- /dev/null
+++ b/pfam_gap_rates/Glyco_hydro_88.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Glyco_tran_WecB.gap.json b/pfam_gap_rates/Glyco_tran_WecB.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..63a2f02be02dae870605ecf04aad25d8cc322088
--- /dev/null
+++ b/pfam_gap_rates/Glyco_tran_WecB.gap.json
@@ -0,0 +1 @@
+{"family": "Glyco_tran_WecB", "n_seqs": 1202, "length": 181, "gap_rates": [0.4168053244592346, 0.22129783693843594, 0.11314475873544093, 0.08319467554076539, 0.07903494176372712, 0.07570715474209651, 0.0740432612312812, 0.0723793677204659, 0.07071547420965059, 0.06821963394342762, 0.06655574043261231, 0.06655574043261231, 0.064891846921797, 0.0632279534109817, 0.06239600665557404, 0.06073211314475874, 0.5965058236272879, 0.06405990016638935, 0.9442595673876872, 0.2454242928452579, 0.12312811980033278, 0.10399334442595674, 0.09317803660565724, 0.09068219633943428, 0.056572379367720464, 0.06073211314475874, 0.033277870216306155, 0.0324459234608985, 0.0324459234608985, 0.0324459234608985, 0.0324459234608985, 0.029118136439267885, 0.024126455906821963, 0.02329450915141431, 0.022462562396006656, 0.021630615640599003, 0.01913477537437604, 0.018302828618968387, 0.018302828618968387, 0.018302828618968387, 0.018302828618968387, 0.06073211314475874, 0.05324459234608985, 0.08402662229617304, 0.9076539101497504, 0.0324459234608985, 0.01913477537437604, 0.01747088186356073, 0.018302828618968387, 0.018302828618968387, 0.018302828618968387, 0.01747088186356073, 0.018302828618968387, 0.018302828618968387, 0.018302828618968387, 0.039101497504159734, 0.03494176372712146, 0.03410981697171381, 0.033277870216306155, 0.01913477537437604, 0.018302828618968387, 0.018302828618968387, 0.01913477537437604, 0.020798668885191347, 0.018302828618968387, 0.018302828618968387, 0.01747088186356073, 0.01747088186356073, 0.01913477537437604, 0.042429284525790346, 0.07986688851913477, 0.030782029950083195, 0.029118136439267885, 0.024126455906821963, 0.02329450915141431, 0.024958402662229616, 0.04409317803660566, 0.05574043261231281, 0.029118136439267885, 0.026622296173044926, 0.024126455906821963, 0.872712146422629, 0.940099833610649, 0.8793677204658902, 0.8427620632279534, 0.03577371048252912, 0.3286189683860233, 0.14559068219633944, 0.651414309484193, 0.8885191347753744, 0.9425956738768719, 0.7229617304492513, 0.6331114808652246, 0.07570715474209651, 0.029950083194675542, 0.025790349417637273, 0.025790349417637273, 0.024126455906821963, 0.022462562396006656, 0.01913477537437604, 0.018302828618968387, 0.01913477537437604, 0.019966722129783693, 0.021630615640599003, 0.019966722129783693, 0.01913477537437604, 0.01913477537437604, 0.01747088186356073, 0.016638935108153077, 0.014975041597337771, 0.014143094841930116, 0.014143094841930116, 0.014143094841930116, 0.012479201331114808, 0.012479201331114808, 0.012479201331114808, 0.013311148086522463, 0.013311148086522463, 0.01747088186356073, 0.014143094841930116, 0.013311148086522463, 0.013311148086522463, 0.013311148086522463, 0.014143094841930116, 0.014143094841930116, 0.014143094841930116, 0.014975041597337771, 0.014975041597337771, 0.014975041597337771, 0.014975041597337771, 0.05324459234608985, 0.03410981697171381, 0.129783693843594, 0.016638935108153077, 0.014975041597337771, 0.8153078202995009, 0.014143094841930116, 0.014143094841930116, 0.012479201331114808, 0.013311148086522463, 0.014143094841930116, 0.015806988352745424, 0.019966722129783693, 0.024126455906821963, 0.029118136439267885, 0.029118136439267885, 0.03161397670549085, 0.03161397670549085, 0.033277870216306155, 0.03410981697171381, 0.036605657237936774, 0.03743760399334443, 0.03826955074875208, 0.03826955074875208, 0.03993344425956739, 0.04159733777038269, 0.042429284525790346, 0.04159733777038269, 0.042429284525790346, 0.04326123128119801, 0.04409317803660566, 0.04492512479201331, 0.04492512479201331, 0.04492512479201331, 0.045757071547420966, 0.045757071547420966, 0.045757071547420966, 0.04658901830282862, 0.048252911813643926, 0.04991680532445923, 0.04991680532445923, 0.051580698835274545, 0.05490848585690516, 0.059900166389351084, 0.06821963394342762, 0.07154742096505824, 0.07154742096505824, 0.08485856905158069, 0.09484193011647254, 0.194675540765391, 0.5332778702163061], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Glyco_tranf_2_3.gap.json b/pfam_gap_rates/Glyco_tranf_2_3.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c71e095355fa618bb43aa6c636e60687204a4e96
--- /dev/null
+++ b/pfam_gap_rates/Glyco_tranf_2_3.gap.json
@@ -0,0 +1 @@
+{"family": "Glyco_tranf_2_3", "n_seqs": 3816, "length": 308, "gap_rates": [0.6708595387840671, 0.5207023060796646, 0.19654088050314467, 0.1619496855345912, 0.13574423480083858, 0.1260482180293501, 0.12211740041928722, 0.1160901467505241, 0.11058700209643606, 0.11242138364779874, 0.10377358490566038, 0.1019392033542977, 0.10665618448637317, 0.09433962264150944, 0.8778825995807128, 0.09014675052410902, 0.08490566037735849, 0.08411949685534591, 0.08176100628930817, 0.0809748427672956, 0.0799266247379455, 0.07809224318658281, 0.07678197064989518, 0.07678197064989518, 0.0749475890985325, 0.07416142557651992, 0.12080712788259958, 0.15775681341719078, 0.9470649895178197, 0.09224318658280922, 0.8878406708595388, 0.7851153039832285, 0.06892033542976939, 0.06525157232704402, 0.7790880503144654, 0.7285115303983228, 0.06289308176100629, 0.06184486373165619, 0.0589622641509434, 0.05817610062893082, 0.056865828092243186, 0.05660377358490566, 0.057651991614255764, 0.875, 0.05738993710691824, 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\ No newline at end of file
diff --git a/pfam_gap_rates/Glyco_trans_1_3.gap.json b/pfam_gap_rates/Glyco_trans_1_3.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..15622391fc31b7d2532e281fd76ae6191a6c0e32
--- /dev/null
+++ b/pfam_gap_rates/Glyco_trans_1_3.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Glyco_trans_4_2.gap.json b/pfam_gap_rates/Glyco_trans_4_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..86b233eae1f8fa2ea70cd924c0ebbc6d635a6b97
--- /dev/null
+++ b/pfam_gap_rates/Glyco_trans_4_2.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Glyco_transf_11.gap.json b/pfam_gap_rates/Glyco_transf_11.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..6249baaf6ebc3a5720ef43026ba1ce9663ab814d
--- /dev/null
+++ b/pfam_gap_rates/Glyco_transf_11.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Glyco_transf_36.gap.json b/pfam_gap_rates/Glyco_transf_36.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..2adfa0d0ca0ad25787979a910f13dee1d75b65c2
--- /dev/null
+++ b/pfam_gap_rates/Glyco_transf_36.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Glyco_transf_4.gap.json b/pfam_gap_rates/Glyco_transf_4.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c76fe2db1a58f7e259b786d3c84ce8b29b211518
--- /dev/null
+++ b/pfam_gap_rates/Glyco_transf_4.gap.json
@@ -0,0 +1 @@
+{"family": "Glyco_transf_4", "n_seqs": 5000, "length": 221, "gap_rates": [0.6944, 0.4026, 0.3066, 0.2984, 0.282, 0.2654, 0.253, 0.2396, 0.2256, 0.2146, 0.2056, 0.1964, 0.1916, 0.189, 0.1866, 0.185, 0.1846, 0.1816, 0.2746, 0.1952, 0.1804, 0.1768, 0.174, 0.17, 0.1692, 0.9474, 0.925, 0.17, 0.182, 0.1788, 0.1856, 0.185, 0.183, 0.181, 0.1838, 0.182, 0.1876, 0.1898, 0.4898, 0.628, 0.7218, 0.7732, 0.8208, 0.8734, 0.8958, 0.9116, 0.9278, 0.9408, 0.9466, 0.9348, 0.9214, 0.9056, 0.8846, 0.8548, 0.7974, 0.7508, 0.6876, 0.5756, 0.4042, 0.364, 0.3078, 0.2508, 0.2152, 0.1826, 0.1624, 0.1512, 0.145, 0.143, 0.1768, 0.1442, 0.1296, 0.1172, 0.1106, 0.1042, 0.096, 0.0902, 0.082, 0.0784, 0.0736, 0.0774, 0.074, 0.0674, 0.0682, 0.0622, 0.0568, 0.0564, 0.057, 0.0538, 0.05, 0.0498, 0.1156, 0.0964, 0.8668, 0.9464, 0.927, 0.8062, 0.0252, 0.0234, 0.0226, 0.0206, 0.0202, 0.0394, 0.0342, 0.0302, 0.0282, 0.0766, 0.0642, 0.0438, 0.0534, 0.1262, 0.0948, 0.0826, 0.1612, 0.1428, 0.1452, 0.1326, 0.1122, 0.2804, 0.8962, 0.9382, 0.8358, 0.4704, 0.0588, 0.0224, 0.0194, 0.014, 0.0134, 0.0106, 0.0098, 0.009, 0.009, 0.0092, 0.0086, 0.0086, 0.009, 0.3594, 0.7042, 0.7912, 0.8356, 0.8552, 0.879, 0.908, 0.9252, 0.9406, 0.9482, 0.9496, 0.9468, 0.9316, 0.9146, 0.8962, 0.868, 0.8468, 0.8154, 0.7572, 0.658, 0.454, 0.4548, 0.3946, 0.3542, 0.3178, 0.236, 0.172, 0.1532, 0.1188, 0.083, 0.0672, 0.0588, 0.0522, 0.0378, 0.0388, 0.0398, 0.043, 0.077, 0.0632, 0.0558, 0.0614, 0.052, 0.9144, 0.9344, 0.8732, 0.0698, 0.0534, 0.0344, 0.0264, 0.0288, 0.0262, 0.0254, 0.0262, 0.027, 0.0274, 0.028, 0.0288, 0.0306, 0.0316, 0.0318, 0.0326, 0.0338, 0.0352, 0.0378, 0.0404, 0.4246, 0.0906, 0.0718, 0.9312, 0.1656, 0.1408, 0.2534, 0.1834, 0.1616, 0.0946, 0.0746, 0.076, 0.082, 0.0876, 0.1106, 0.1388, 0.1894, 0.2792, 0.3858, 0.5308, 0.8682], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Glyco_transf_43.gap.json b/pfam_gap_rates/Glyco_transf_43.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..27747bd9ff9191609352e7c1885044f1eef0e75a
--- /dev/null
+++ b/pfam_gap_rates/Glyco_transf_43.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Glyco_transf_92.gap.json b/pfam_gap_rates/Glyco_transf_92.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..2cad0418a32e3ef1e5bd9331d07cd42fc703b336
--- /dev/null
+++ b/pfam_gap_rates/Glyco_transf_92.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Glycogen_syn.gap.json b/pfam_gap_rates/Glycogen_syn.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a2f35cc1b46d237c40a6fae365fc7eed25601336
--- /dev/null
+++ b/pfam_gap_rates/Glycogen_syn.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Glyoxalase_2.gap.json b/pfam_gap_rates/Glyoxalase_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c009cc99a380ba4bc84c384fa89ddb08f9b724ad
--- /dev/null
+++ b/pfam_gap_rates/Glyoxalase_2.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Glyoxalase_5.gap.json b/pfam_gap_rates/Glyoxalase_5.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..8da952f652174be00b7dba2b8d00ac2ed18ecfc5
--- /dev/null
+++ b/pfam_gap_rates/Glyoxalase_5.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Glypican.gap.json b/pfam_gap_rates/Glypican.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c06e157a45593853632b964b73b85ec2fc4e1664
--- /dev/null
+++ b/pfam_gap_rates/Glypican.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/GntP_permease.gap.json b/pfam_gap_rates/GntP_permease.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..6b6437b21bae1747157c56e904c6a35279779bcf
--- /dev/null
+++ b/pfam_gap_rates/GntP_permease.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Gp-FAR-1.gap.json b/pfam_gap_rates/Gp-FAR-1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..958ec9e387a12a8dd8a074ae7bfcb24e9aa61683
--- /dev/null
+++ b/pfam_gap_rates/Gp-FAR-1.gap.json
@@ -0,0 +1 @@
+{"family": "Gp-FAR-1", "n_seqs": 144, "length": 157, "gap_rates": [0.8819444444444444, 0.5416666666666666, 0.4861111111111111, 0.4097222222222222, 0.3263888888888889, 0.2708333333333333, 0.22916666666666666, 0.22916666666666666, 0.22916666666666666, 0.22916666666666666, 0.22916666666666666, 0.2152777777777778, 0.20833333333333334, 0.2013888888888889, 0.2013888888888889, 0.2013888888888889, 0.19444444444444445, 0.1527777777777778, 0.125, 0.11805555555555555, 0.11805555555555555, 0.11805555555555555, 0.125, 0.125, 0.125, 0.11805555555555555, 0.09722222222222222, 0.09722222222222222, 0.09722222222222222, 0.1111111111111111, 0.1111111111111111, 0.09027777777777778, 0.5694444444444444, 0.09722222222222222, 0.09027777777777778, 0.08333333333333333, 0.6458333333333334, 0.7708333333333334, 0.9236111111111112, 0.6666666666666666, 0.6111111111111112, 0.09027777777777778, 0.09027777777777778, 0.08333333333333333, 0.08333333333333333, 0.08333333333333333, 0.9444444444444444, 0.06944444444444445, 0.0763888888888889, 0.06944444444444445, 0.041666666666666664, 0.041666666666666664, 0.027777777777777776, 0.027777777777777776, 0.027777777777777776, 0.027777777777777776, 0.027777777777777776, 0.027777777777777776, 0.027777777777777776, 0.027777777777777776, 0.020833333333333332, 0.020833333333333332, 0.020833333333333332, 0.020833333333333332, 0.020833333333333332, 0.020833333333333332, 0.020833333333333332, 0.020833333333333332, 0.027777777777777776, 0.027777777777777776, 0.027777777777777776, 0.034722222222222224, 0.034722222222222224, 0.034722222222222224, 0.034722222222222224, 0.034722222222222224, 0.034722222222222224, 0.034722222222222224, 0.034722222222222224, 0.034722222222222224, 0.034722222222222224, 0.034722222222222224, 0.034722222222222224, 0.05555555555555555, 0.05555555555555555, 0.05555555555555555, 0.034722222222222224, 0.027777777777777776, 0.05555555555555555, 0.0763888888888889, 0.18055555555555555, 0.1736111111111111, 0.1597222222222222, 0.09722222222222222, 0.09027777777777778, 0.0763888888888889, 0.05555555555555555, 0.05555555555555555, 0.0625, 0.2569444444444444, 0.25, 0.09722222222222222, 0.06944444444444445, 0.0763888888888889, 0.06944444444444445, 0.06944444444444445, 0.06944444444444445, 0.8680555555555556, 0.2638888888888889, 0.2361111111111111, 0.1527777777777778, 0.09722222222222222, 0.05555555555555555, 0.04861111111111111, 0.041666666666666664, 0.04861111111111111, 0.04861111111111111, 0.04861111111111111, 0.04861111111111111, 0.04861111111111111, 0.05555555555555555, 0.04861111111111111, 0.04861111111111111, 0.04861111111111111, 0.04861111111111111, 0.04861111111111111, 0.04861111111111111, 0.04861111111111111, 0.04861111111111111, 0.05555555555555555, 0.05555555555555555, 0.05555555555555555, 0.0625, 0.0625, 0.0625, 0.0625, 0.0625, 0.0625, 0.06944444444444445, 0.06944444444444445, 0.1111111111111111, 0.14583333333333334, 0.1597222222222222, 0.16666666666666666, 0.18055555555555555, 0.2222222222222222, 0.2777777777777778, 0.3402777777777778, 0.3541666666666667, 0.4097222222222222, 0.4513888888888889, 0.4722222222222222, 0.4930555555555556, 0.5416666666666666, 0.5625, 0.6458333333333334, 0.8680555555555556], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Gp_dh_C.gap.json b/pfam_gap_rates/Gp_dh_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..69891ba0f658ded9f0fe45314fe64fbccec4ef2c
--- /dev/null
+++ b/pfam_gap_rates/Gp_dh_C.gap.json
@@ -0,0 +1 @@
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diff --git a/pfam_gap_rates/GreA_GreB.gap.json b/pfam_gap_rates/GreA_GreB.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..322c0d0353ce9dba057d6b17e53694c50ee52582
--- /dev/null
+++ b/pfam_gap_rates/GreA_GreB.gap.json
@@ -0,0 +1 @@
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diff --git a/pfam_gap_rates/GreA_GreB_N.gap.json b/pfam_gap_rates/GreA_GreB_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..35a50809d4ddea2f6ec7ce705147f7621b64493e
--- /dev/null
+++ b/pfam_gap_rates/GreA_GreB_N.gap.json
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\ No newline at end of file
diff --git a/pfam_gap_rates/Gryzun.gap.json b/pfam_gap_rates/Gryzun.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..06ab620515d5a497a04e6a9e20909431ce1effdd
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\ No newline at end of file
diff --git a/pfam_gap_rates/Gti1_Pac2.gap.json b/pfam_gap_rates/Gti1_Pac2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..40456f7e97cad0fea5c3c9c1e60f636168263522
--- /dev/null
+++ b/pfam_gap_rates/Gti1_Pac2.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Gtr1_RagA.gap.json b/pfam_gap_rates/Gtr1_RagA.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..db4e04822c64ac6fcf9cbbb4fd1dab6660d8de7a
--- /dev/null
+++ b/pfam_gap_rates/Gtr1_RagA.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/GtrA.gap.json b/pfam_gap_rates/GtrA.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..cbc8b12eeedcb24daea133eb685f683cef3b7f28
--- /dev/null
+++ b/pfam_gap_rates/GtrA.gap.json
@@ -0,0 +1 @@
+{"family": "GtrA", "n_seqs": 2382, "length": 142, "gap_rates": [0.3614609571788413, 0.08438287153652393, 0.07724601175482787, 0.06842989084802686, 0.06339210747271201, 0.05961376994122586, 0.05583543240973971, 0.04408060453400504, 0.04072208228379513, 0.039882451721242655, 0.037783375314861464, 0.03442485306465155, 0.03316540722082284, 0.033585222502099076, 0.03232577665827036, 0.031486146095717885, 0.030646515533165407, 0.028967254408060455, 0.02938706968933669, 0.028127623845507977, 0.02644836272040302, 0.2040302267002519, 0.0852225020990764, 0.7808564231738035, 0.818639798488665, 0.8979848866498741, 0.9328295549958019, 0.9450041981528128, 0.9164567590260285, 0.8669185558354324, 0.8018471872376155, 0.744752308984047, 0.14567590260285473, 0.06255247691015953, 0.013014273719563391, 0.0109151973131822, 0.011335012594458438, 0.009235936188077247, 0.006717044500419815, 0.006297229219143577, 0.005037783375314861, 0.0041981528127623844, 0.002938706968933669, 0.002938706968933669, 0.002938706968933669, 0.002938706968933669, 0.0025188916876574307, 0.0025188916876574307, 0.0020990764063811922, 0.0016792611251049538, 0.0016792611251049538, 0.0016792611251049538, 0.0020990764063811922, 0.0020990764063811922, 0.0020990764063811922, 0.0025188916876574307, 0.0025188916876574307, 0.002938706968933669, 0.0041981528127623844, 0.0025188916876574307, 0.0020990764063811922, 0.0025188916876574307, 0.0025188916876574307, 0.0033585222502099076, 0.005037783375314861, 0.007136859781696054, 0.054575986565911, 0.27455919395465994, 0.4269521410579345, 0.7514693534844669, 0.8975650713685979, 0.6922753988245172, 0.08060453400503778, 0.0382031905961377, 0.02686817800167926, 0.0218303946263644, 0.018891687657430732, 0.017212426532325777, 0.017632241813602016, 0.017632241813602016, 0.018052057094878254, 0.018052057094878254, 0.018891687657430732, 0.018891687657430732, 0.018891687657430732, 0.018891687657430732, 0.019311502938706968, 0.019311502938706968, 0.019311502938706968, 0.020151133501259445, 0.020151133501259445, 0.020570948782535684, 0.020990764063811923, 0.027707808564231738, 0.023509655751469353, 0.0327455919395466, 0.02518891687657431, 0.02392947103274559, 0.05667506297229219, 0.028547439126784216, 0.052057094878253565, 0.03190596137699412, 0.0382031905961377, 0.06591099916036944, 0.06675062972292191, 0.05919395465994962, 0.05919395465994962, 0.6381192275398825, 0.7141057934508817, 0.8123425692695214, 0.8589420654911839, 0.9013434089000839, 0.9206549118387909, 0.9319899244332494, 0.9147774979009236, 0.887489504617968, 0.8320738874895046, 0.7699412258606213, 0.6603694374475231, 0.6188077246011755, 0.03484466834592779, 0.03526448362720403, 0.035684298908480266, 0.03526448362720403, 0.036943744752308987, 0.03610411418975651, 0.03610411418975651, 0.03610411418975651, 0.03610411418975651, 0.037783375314861464, 0.037783375314861464, 0.03736356003358522, 0.0382031905961377, 0.03904282115869018, 0.039882451721242655, 0.04240134340890008, 0.04450041981528128, 0.04827875734676742, 0.05499580184718724, 0.07346767422334173, 0.16078925272879932, 0.19395465994962216], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/GvpK.gap.json b/pfam_gap_rates/GvpK.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..6e83c59815fcd19c4af3fdfafae3121dc8f5ebe5
--- /dev/null
+++ b/pfam_gap_rates/GvpK.gap.json
@@ -0,0 +1 @@
+{"family": "GvpK", "n_seqs": 105, "length": 87, "gap_rates": [0.5238095238095238, 0.2571428571428571, 0.21904761904761905, 0.1619047619047619, 0.14285714285714285, 0.11428571428571428, 0.0761904761904762, 0.06666666666666667, 0.05714285714285714, 0.02857142857142857, 0.02857142857142857, 0.02857142857142857, 0.02857142857142857, 0.01904761904761905, 0.009523809523809525, 0.009523809523809525, 0.009523809523809525, 0.009523809523809525, 0.009523809523809525, 0.009523809523809525, 0.009523809523809525, 0.009523809523809525, 0.009523809523809525, 0.009523809523809525, 0.009523809523809525, 0.009523809523809525, 0.009523809523809525, 0.009523809523809525, 0.009523809523809525, 0.009523809523809525, 0.009523809523809525, 0.009523809523809525, 0.009523809523809525, 0.009523809523809525, 0.009523809523809525, 0.009523809523809525, 0.009523809523809525, 0.009523809523809525, 0.009523809523809525, 0.01904761904761905, 0.01904761904761905, 0.01904761904761905, 0.01904761904761905, 0.01904761904761905, 0.01904761904761905, 0.01904761904761905, 0.01904761904761905, 0.01904761904761905, 0.01904761904761905, 0.01904761904761905, 0.01904761904761905, 0.01904761904761905, 0.01904761904761905, 0.01904761904761905, 0.01904761904761905, 0.01904761904761905, 0.01904761904761905, 0.01904761904761905, 0.01904761904761905, 0.009523809523809525, 0.009523809523809525, 0.009523809523809525, 0.009523809523809525, 0.009523809523809525, 0.009523809523809525, 0.009523809523809525, 0.009523809523809525, 0.02857142857142857, 0.02857142857142857, 0.0380952380952381, 0.047619047619047616, 0.047619047619047616, 0.8761904761904762, 0.8761904761904762, 0.05714285714285714, 0.05714285714285714, 0.06666666666666667, 0.0761904761904762, 0.0761904761904762, 0.0761904761904762, 0.0761904761904762, 0.0761904761904762, 0.08571428571428572, 0.09523809523809523, 0.19047619047619047, 0.20952380952380953, 0.21904761904761905], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/HAT.gap.json b/pfam_gap_rates/HAT.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e95f5184ada10977937644c1f84d6c34609b7ffe
--- /dev/null
+++ b/pfam_gap_rates/HAT.gap.json
@@ -0,0 +1 @@
+{"family": "HAT", "n_seqs": 405, "length": 34, "gap_rates": [0.6271604938271605, 0.08395061728395062, 0.056790123456790124, 0.024691358024691357, 0.019753086419753086, 0.014814814814814815, 0.012345679012345678, 0.012345679012345678, 0.009876543209876543, 0.009876543209876543, 0.009876543209876543, 0.009876543209876543, 0.009876543209876543, 0.0, 0.0, 0.0, 0.8987654320987655, 0.0024691358024691358, 0.8617283950617284, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.012345679012345678, 0.014814814814814815, 0.014814814814814815, 0.014814814814814815, 0.4419753086419753, 0.5481481481481482], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/HDPD.gap.json b/pfam_gap_rates/HDPD.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..6d613e12c93a5ce53d135405a82adad02b916db5
--- /dev/null
+++ b/pfam_gap_rates/HDPD.gap.json
@@ -0,0 +1 @@
+{"family": "HDPD", "n_seqs": 115, "length": 223, "gap_rates": [0.7565217391304347, 0.43478260869565216, 0.33043478260869563, 0.3217391304347826, 0.3130434782608696, 0.30434782608695654, 0.30434782608695654, 0.28695652173913044, 0.2782608695652174, 0.25217391304347825, 0.25217391304347825, 0.23478260869565218, 0.23478260869565218, 0.22608695652173913, 0.22608695652173913, 0.22608695652173913, 0.20869565217391303, 0.21739130434782608, 0.20869565217391303, 0.16521739130434782, 0.14782608695652175, 0.12173913043478261, 0.09565217391304348, 0.08695652173913043, 0.043478260869565216, 0.043478260869565216, 0.043478260869565216, 0.034782608695652174, 0.034782608695652174, 0.06086956521739131, 0.8608695652173913, 0.9217391304347826, 0.8869565217391304, 0.8521739130434782, 0.043478260869565216, 0.017391304347826087, 0.017391304347826087, 0.017391304347826087, 0.017391304347826087, 0.7391304347826086, 0.008695652173913044, 0.008695652173913044, 0.008695652173913044, 0.008695652173913044, 0.008695652173913044, 0.008695652173913044, 0.008695652173913044, 0.008695652173913044, 0.05217391304347826, 0.9478260869565217, 0.9478260869565217, 0.8956521739130435, 0.10434782608695652, 0.8608695652173913, 0.8608695652173913, 0.8608695652173913, 0.8608695652173913, 0.8608695652173913, 0.8608695652173913, 0.8608695652173913, 0.8608695652173913, 0.8608695652173913, 0.8608695652173913, 0.8608695652173913, 0.8608695652173913, 0.8695652173913043, 0.8695652173913043, 0.8695652173913043, 0.8695652173913043, 0.8695652173913043, 0.8695652173913043, 0.8695652173913043, 0.8695652173913043, 0.8782608695652174, 0.8782608695652174, 0.8782608695652174, 0.8782608695652174, 0.8782608695652174, 0.8782608695652174, 0.8782608695652174, 0.8782608695652174, 0.8782608695652174, 0.8782608695652174, 0.8782608695652174, 0.8782608695652174, 0.8782608695652174, 0.8782608695652174, 0.8869565217391304, 0.8869565217391304, 0.8869565217391304, 0.8869565217391304, 0.8869565217391304, 0.8869565217391304, 0.8869565217391304, 0.8869565217391304, 0.8869565217391304, 0.8869565217391304, 0.8869565217391304, 0.8956521739130435, 0.9478260869565217, 0.8956521739130435, 0.8869565217391304, 0.8869565217391304, 0.8869565217391304, 0.8869565217391304, 0.8869565217391304, 0.8869565217391304, 0.8869565217391304, 0.8869565217391304, 0.8869565217391304, 0.8869565217391304, 0.8782608695652174, 0.8782608695652174, 0.8782608695652174, 0.8782608695652174, 0.8782608695652174, 0.8782608695652174, 0.8782608695652174, 0.8782608695652174, 0.8782608695652174, 0.8782608695652174, 0.8782608695652174, 0.8782608695652174, 0.8782608695652174, 0.8782608695652174, 0.8695652173913043, 0.8695652173913043, 0.8695652173913043, 0.8695652173913043, 0.8695652173913043, 0.8695652173913043, 0.8695652173913043, 0.8695652173913043, 0.8695652173913043, 0.8608695652173913, 0.8608695652173913, 0.8608695652173913, 0.8608695652173913, 0.8608695652173913, 0.8608695652173913, 0.8608695652173913, 0.8608695652173913, 0.8608695652173913, 0.8608695652173913, 0.8608695652173913, 0.8608695652173913, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.008695652173913044, 0.008695652173913044, 0.017391304347826087, 0.02608695652173913, 0.008695652173913044, 0.8869565217391304, 0.8956521739130435, 0.8782608695652174, 0.0, 0.0, 0.008695652173913044, 0.05217391304347826, 0.034782608695652174, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.06086956521739131, 0.06086956521739131, 0.06086956521739131, 0.7652173913043478, 0.008695652173913044, 0.0, 0.0, 0.008695652173913044, 0.0, 0.0, 0.0, 0.008695652173913044, 0.16521739130434782, 0.7217391304347827, 0.02608695652173913, 0.0, 0.0, 0.008695652173913044, 0.008695652173913044, 0.008695652173913044, 0.008695652173913044, 0.008695652173913044, 0.008695652173913044, 0.008695652173913044, 0.06086956521739131, 0.06086956521739131, 0.06086956521739131, 0.017391304347826087, 0.043478260869565216, 0.034782608695652174, 0.034782608695652174, 0.7043478260869566, 0.06956521739130435, 0.0782608695652174, 0.06956521739130435, 0.08695652173913043, 0.11304347826086956, 0.13043478260869565, 0.17391304347826086, 0.2, 0.24347826086956523, 0.2608695652173913, 0.2956521739130435, 0.3391304347826087, 0.3391304347826087, 0.3565217391304348, 0.4956521739130435], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/HD_4.gap.json b/pfam_gap_rates/HD_4.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..0b5f26a6f53c8e0a13c82fe9a43f8f087e460023
--- /dev/null
+++ b/pfam_gap_rates/HD_4.gap.json
@@ -0,0 +1 @@
+{"family": "HD_4", "n_seqs": 3341, "length": 166, "gap_rates": [0.20233463035019456, 0.17599521101466628, 0.14337024842861418, 0.12361568392696798, 0.11224184375935349, 0.109548039509129, 0.10625561209218796, 0.10416043100868004, 0.10445974259203832, 0.10146662675845555, 0.9422328644118527, 0.8683029033223586, 0.0945824603412152, 0.08530380125710865, 0.07812032325651003, 0.07243340317270279, 0.06734510625561209, 0.06405267883867105, 0.061059563005088295, 0.057767135588147264, 0.05417539658784795, 0.050882969170906914, 0.0472912301706076, 0.04310086800359174, 0.0398084405866507, 0.03412152050284346, 0.032026339419335526, 0.0311284046692607, 0.029931158335827598, 0.029931158335827598, 0.029931158335827598, 0.03531876683627656, 0.03352289733612691, 0.9126010176593834, 0.03292427416941036, 0.02813528883567794, 0.029931158335827598, 0.04190362167015863, 0.9377431906614786, 0.038910505836575876, 0.03172702783597725, 0.030829093085902426, 0.02394492666866208, 0.023346303501945526, 0.020353187668362766, 0.01765938341813828, 0.01765938341813828, 0.01765938341813828, 0.017360071834780007, 0.01706076025142173, 0.01706076025142173, 0.016761448668063453, 0.016761448668063453, 0.016761448668063453, 0.01706076025142173, 0.019155941334929663, 0.021849745585154144, 0.9395390601616282, 0.06614785992217899, 0.02394492666866208, 0.027237354085603113, 0.020951810835079316, 0.02005387608500449, 0.019455252918287938, 0.019455252918287938, 0.019455252918287938, 0.019455252918287938, 0.019155941334929663, 0.02304699191858725, 0.021251122418437594, 0.02065249925172104, 0.020951810835079316, 0.022747680335228972, 0.023346303501945526, 0.02454354983537863, 0.027237354085603113, 0.02693804250224484, 0.02903322358575277, 0.0311284046692607, 0.03172702783597725, 0.03322358575276863, 0.03591739000299311, 0.04340017958695001, 0.04848847650404071, 0.05327746183777312, 0.05267883867105657, 0.0547740197545645, 0.05597126608799761, 0.06016162825501347, 0.8410655492367555, 0.9179886261598323, 0.9374438790781203, 0.8985333732415445, 0.8347800059862317, 0.8252020353187668, 0.7868901526489075, 0.761448668063454, 0.6950014965579168, 0.2666866207722239, 0.17659383418138283, 0.08680035917390003, 0.07901825800658485, 0.07303202633941934, 0.07333133792277761, 0.07123615683926968, 0.0685423525890452, 0.06794372942232864, 0.06884166417240348, 0.07063753367255313, 0.07153546842262795, 0.19066147859922178, 0.18078419634839868, 0.1370847051780904, 0.11792876384316073, 0.11164322059263694, 0.17360071834780005, 0.1430709368452559, 0.12241843759353487, 0.14337024842861418, 0.08051481592337624, 0.06584854833882071, 0.06495061358874589, 0.06375336725531278, 0.06375336725531278, 0.06405267883867105, 0.06405267883867105, 0.06405267883867105, 0.06405267883867105, 0.06435199042202933, 0.06465130200538761, 0.06405267883867105, 0.06435199042202933, 0.06465130200538761, 0.06524992517210416, 0.06764441783897036, 0.0685423525890452, 0.10715354684226279, 0.11613289434301108, 0.1233163723436097, 0.9416342412451362, 0.13588745884465728, 0.14127506734510625, 0.14636336426219695, 0.14995510326249625, 0.13289434301107453, 0.14666267584555523, 0.14606405267883868, 0.14995510326249625, 0.15264890751272076, 0.15504340017958695, 0.15773720442981143, 0.16132894343011075, 0.1631248129302604, 0.16521999401376833, 0.16611792876384315, 0.16881173301406766, 0.17090691409757558, 0.17360071834780005, 0.17569589943130798, 0.18736905118228075, 0.19215803651601318, 0.20891948518407663, 0.2128105357677342, 0.2167015863513918, 0.23256510026938043, 0.9203831188266985], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/HHH_2.gap.json b/pfam_gap_rates/HHH_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c940d9070b4d1328dd90035c956aeb2728d6db1c
--- /dev/null
+++ b/pfam_gap_rates/HHH_2.gap.json
@@ -0,0 +1 @@
+{"family": "HHH_2", "n_seqs": 2713, "length": 64, "gap_rates": [0.4098783634353115, 0.2823442683376336, 0.2727607814227792, 0.2716549944710652, 0.27312937707335055, 0.2709178031699226, 0.23405823811279028, 0.07298193881312201, 0.058238112790269074, 0.05197198673055658, 0.04718024327312938, 0.04570586067084408, 0.044600073719130114, 0.040545521562845556, 0.035753778105418355, 0.03427939550313306, 0.024327312937707336, 0.005897530409141172, 0.005160339107998526, 0.004054552156284556, 0.004054552156284556, 0.004054552156284556, 0.004054552156284556, 0.004054552156284556, 0.008846295613711759, 0.009214891264283081, 0.009214891264283081, 0.004791743457427202, 0.003685956505713233, 0.005160339107998526, 0.005160339107998526, 0.010320678215997052, 0.016586804275709546, 0.01806118687799484, 0.01806118687799484, 0.021747143383708072, 0.02285293033542204, 0.02395871728713601, 0.025433099889421305, 0.029487652045705862, 0.04607445632141541, 0.041651308514559525, 0.02727607814227792, 0.026170291190563952, 0.026538886841135274, 0.026170291190563952, 0.0269074824917066, 0.026538886841135274, 0.0269074824917066, 0.02727607814227792, 0.028013269443420568, 0.029487652045705862, 0.03206782159970512, 0.049023221525986, 0.05565794323626981, 0.08182823442683376, 0.1489126428308146, 0.2012532252119425, 0.25875414670106894, 0.29524511610762993, 0.3247327681533358, 0.3582749723553262, 0.40914117213416884, 0.5525248802064135], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/HPD.gap.json b/pfam_gap_rates/HPD.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..bc361ce1684edd666980da59852bbd06d1707c62
--- /dev/null
+++ b/pfam_gap_rates/HPD.gap.json
@@ -0,0 +1 @@
+{"family": "HPD", "n_seqs": 129, "length": 154, "gap_rates": [0.6589147286821705, 0.29457364341085274, 0.29457364341085274, 0.29457364341085274, 0.27906976744186046, 0.27906976744186046, 0.2713178294573643, 0.2713178294573643, 0.26356589147286824, 0.26356589147286824, 0.26356589147286824, 0.26356589147286824, 0.24031007751937986, 0.24031007751937986, 0.24031007751937986, 0.24031007751937986, 0.24031007751937986, 0.23255813953488372, 0.23255813953488372, 0.20930232558139536, 0.20155038759689922, 0.20155038759689922, 0.20155038759689922, 0.20155038759689922, 0.20155038759689922, 0.1937984496124031, 0.18604651162790697, 0.17829457364341086, 0.17054263565891473, 0.17054263565891473, 0.17054263565891473, 0.16279069767441862, 0.15503875968992248, 0.17054263565891473, 0.17829457364341086, 0.17829457364341086, 0.17829457364341086, 0.18604651162790697, 0.18604651162790697, 0.18604651162790697, 0.18604651162790697, 0.18604651162790697, 0.18604651162790697, 0.18604651162790697, 0.18604651162790697, 0.17829457364341086, 0.17829457364341086, 0.17829457364341086, 0.17054263565891473, 0.17829457364341086, 0.23255813953488372, 0.24806201550387597, 0.24806201550387597, 0.2558139534883721, 0.26356589147286824, 0.26356589147286824, 0.18604651162790697, 0.18604651162790697, 0.18604651162790697, 0.18604651162790697, 0.18604651162790697, 0.1937984496124031, 0.20155038759689922, 0.20155038759689922, 0.1937984496124031, 0.1937984496124031, 0.1937984496124031, 0.1937984496124031, 0.1937984496124031, 0.1937984496124031, 0.1937984496124031, 0.1937984496124031, 0.1937984496124031, 0.1937984496124031, 0.1937984496124031, 0.1937984496124031, 0.1937984496124031, 0.1937984496124031, 0.1937984496124031, 0.1937984496124031, 0.1937984496124031, 0.1937984496124031, 0.1937984496124031, 0.1937984496124031, 0.1937984496124031, 0.1937984496124031, 0.1937984496124031, 0.1937984496124031, 0.1937984496124031, 0.1937984496124031, 0.20155038759689922, 0.20155038759689922, 0.1937984496124031, 0.1937984496124031, 0.1937984496124031, 0.17054263565891473, 0.17054263565891473, 0.16279069767441862, 0.16279069767441862, 0.1937984496124031, 0.1937984496124031, 0.1937984496124031, 0.20155038759689922, 0.20155038759689922, 0.20155038759689922, 0.20155038759689922, 0.20155038759689922, 0.20155038759689922, 0.20155038759689922, 0.20155038759689922, 0.20155038759689922, 0.20930232558139536, 0.20930232558139536, 0.20930232558139536, 0.20930232558139536, 0.20930232558139536, 0.20930232558139536, 0.20930232558139536, 0.20930232558139536, 0.20930232558139536, 0.20930232558139536, 0.21705426356589147, 0.21705426356589147, 0.21705426356589147, 0.21705426356589147, 0.21705426356589147, 0.21705426356589147, 0.21705426356589147, 0.21705426356589147, 0.21705426356589147, 0.21705426356589147, 0.21705426356589147, 0.21705426356589147, 0.21705426356589147, 0.21705426356589147, 0.2248062015503876, 0.23255813953488372, 0.23255813953488372, 0.23255813953488372, 0.23255813953488372, 0.24031007751937986, 0.24031007751937986, 0.24031007751937986, 0.24031007751937986, 0.24031007751937986, 0.24806201550387597, 0.24806201550387597, 0.24806201550387597, 0.2713178294573643, 0.27906976744186046, 0.29457364341085274, 0.3178294573643411, 0.4108527131782946, 0.5348837209302325], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/HTH_17.gap.json b/pfam_gap_rates/HTH_17.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..785ffda45f69b2b9046ee852efb4169307aefb79
--- /dev/null
+++ b/pfam_gap_rates/HTH_17.gap.json
@@ -0,0 +1 @@
+{"family": "HTH_17", "n_seqs": 4510, "length": 55, "gap_rates": [0.4501108647450111, 0.15343680709534369, 0.08780487804878048, 0.059645232815964525, 0.037915742793791576, 0.017516629711751663, 0.009534368070953437, 0.007317073170731708, 0.005321507760532151, 0.004656319290465632, 0.004434589800443459, 0.0026607538802660754, 0.0019955654101995565, 0.0011086474501108647, 0.0008869179600886918, 0.0006651884700665188, 0.0006651884700665188, 0.0006651884700665188, 0.00022172949002217295, 0.00022172949002217295, 0.0017738359201773836, 0.0028824833702882483, 0.007760532150776054, 0.0008869179600886918, 0.0008869179600886918, 0.0004434589800443459, 0.0004434589800443459, 0.04789356984478936, 0.0015521064301552106, 0.0017738359201773836, 0.946119733924612, 0.8279379157427937, 0.0031042128603104213, 0.9374722838137473, 0.7689578713968958, 0.005764966740576497, 0.03680709534368071, 0.01507760532150776, 0.05543237250554324, 0.9144124168514413, 0.011751662971175166, 0.012638580931263858, 0.014190687361419069, 0.017516629711751663, 0.026829268292682926, 0.03414634146341464, 0.04434589800443459, 0.04900221729490022, 0.06829268292682927, 0.08536585365853659, 0.11529933481152993, 0.1583148558758315, 0.2401330376940133, 0.35609756097560974, 0.6186252771618626], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/HTH_20.gap.json b/pfam_gap_rates/HTH_20.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b5c7f84fb6e281737380327d896cf1ee3c3703c2
--- /dev/null
+++ b/pfam_gap_rates/HTH_20.gap.json
@@ -0,0 +1 @@
+{"family": "HTH_20", "n_seqs": 4789, "length": 65, "gap_rates": [0.8481937774065567, 0.5065775736061808, 0.27291710169137606, 0.1380246397995406, 0.08498642722906662, 0.07120484443516392, 0.05429108373355607, 0.049488410941741494, 0.04426811442889956, 0.03236583837961996, 0.01837544372520359, 0.012111087909793277, 0.008561286281060764, 0.00522029651284193, 0.003549801628732512, 0.003340989768218835, 0.003549801628732512, 0.0029233660471914805, 0.0022969304656504487, 0.8289830862392984, 0.9455001044059302, 0.774274378784715, 0.48068490290248483, 0.050532470244309874, 0.0029233660471914805, 0.001252871163082063, 0.0008352474420547087, 0.0008352474420547087, 0.00041762372102735435, 0.00041762372102735435, 0.0010440593025683859, 0.0006264355815410315, 0.0014616830235957402, 0.0020881186051367718, 0.0029233660471914805, 0.005846732094382961, 0.03027771977448319, 0.9384005011484652, 0.032783462100647316, 0.0016704948841094174, 0.0, 0.0, 0.00020881186051367718, 0.00020881186051367718, 0.00020881186051367718, 0.00020881186051367718, 0.00041762372102735435, 0.0006264355815410315, 0.0006264355815410315, 0.0006264355815410315, 0.0008352474420547087, 0.0010440593025683859, 0.0029233660471914805, 0.003549801628732512, 0.0041762372102735435, 0.0041762372102735435, 0.007934850699519732, 0.010231781165170182, 0.01983712674879933, 0.0457297974524953, 0.09835038630194196, 0.1628732512006682, 0.2359574023804552, 0.3257465024013364, 0.564000835247442], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/HTH_Tnp_ISL3.gap.json b/pfam_gap_rates/HTH_Tnp_ISL3.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..6590834fda1ea226f3d03c170cc485455e8d9f33
--- /dev/null
+++ b/pfam_gap_rates/HTH_Tnp_ISL3.gap.json
@@ -0,0 +1 @@
+{"family": "HTH_Tnp_ISL3", "n_seqs": 509, "length": 53, "gap_rates": [0.6286836935166994, 0.29469548133595286, 0.22986247544204322, 0.13555992141453832, 0.08840864440078586, 0.04518664047151277, 0.03143418467583497, 0.023575638506876228, 0.01768172888015717, 0.011787819253438114, 0.011787819253438114, 0.011787819253438114, 0.005893909626719057, 0.005893909626719057, 0.005893909626719057, 0.003929273084479371, 0.003929273084479371, 0.0019646365422396855, 0.0019646365422396855, 0.0019646365422396855, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.8565815324165029, 0.481335952848723, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.009823182711198428, 0.009823182711198428, 0.009823182711198428, 0.009823182711198428, 0.011787819253438114, 0.023575638506876228, 0.043222003929273084, 0.07858546168958742, 0.15520628683693516, 0.25343811394891946, 0.3889980353634578, 0.7406679764243614], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/HVSL.gap.json b/pfam_gap_rates/HVSL.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..25ada396f91e1a77f589cdd416a989403c8eb3f9
--- /dev/null
+++ b/pfam_gap_rates/HVSL.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Haem_degrading.gap.json b/pfam_gap_rates/Haem_degrading.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ccad1be47d6803fd131ef23a8225093c1c8e281a
--- /dev/null
+++ b/pfam_gap_rates/Haem_degrading.gap.json
@@ -0,0 +1 @@
+{"family": "Haem_degrading", "n_seqs": 1146, "length": 155, "gap_rates": [0.3542757417102967, 0.16928446771378708, 0.10296684118673648, 0.08202443280977312, 0.07504363001745201, 0.07155322862129145, 0.06719022687609075, 0.05846422338568935, 0.055846422338568937, 0.05410122164048865, 0.04886561954624782, 0.0462478184991274, 0.0462478184991274, 0.04275741710296684, 0.04275741710296684, 0.041884816753926704, 0.04101221640488656, 0.04101221640488656, 0.04799301919720768, 0.041884816753926704, 0.9240837696335078, 0.9458987783595113, 0.794066317626527, 0.03926701570680628, 0.037521815008726006, 0.034904013961605584, 0.031413612565445025, 0.030541012216404886, 0.029668411867364748, 0.029668411867364748, 0.029668411867364748, 0.029668411867364748, 0.028795811518324606, 0.16230366492146597, 0.028795811518324606, 0.034031413612565446, 0.029668411867364748, 0.028795811518324606, 0.027923211169284468, 0.027050610820244327, 0.027050610820244327, 0.02617801047120419, 0.02530541012216405, 0.02268760907504363, 0.02356020942408377, 0.9162303664921466, 0.02356020942408377, 0.02356020942408377, 0.028795811518324606, 0.027923211169284468, 0.02617801047120419, 0.027923211169284468, 0.027050610820244327, 0.028795811518324606, 0.027050610820244327, 0.027050610820244327, 0.028795811518324606, 0.029668411867364748, 0.029668411867364748, 0.029668411867364748, 0.031413612565445025, 0.031413612565445025, 0.03315881326352531, 0.03228621291448516, 0.034031413612565446, 0.038394415357766144, 0.03926701570680628, 0.03926701570680628, 0.04013961605584642, 0.04013961605584642, 0.04101221640488656, 0.041884816753926704, 0.04363001745200698, 0.04450261780104712, 0.0462478184991274, 0.04712041884816754, 0.0462478184991274, 0.04101221640488656, 0.28970331588132636, 0.5, 0.6151832460732984, 0.6945898778359512, 0.7774869109947644, 0.800174520069808, 0.9223385689354275, 0.9450261780104712, 0.9258289703315882, 0.8254799301919721, 0.7879581151832461, 0.7600349040139616, 0.6509598603839442, 0.5383944153577661, 0.3621291448516579, 0.26788830715532286, 0.07242582897033159, 0.5593368237347295, 0.5593368237347295, 0.543630017452007, 0.07417102966841187, 0.27137870855148344, 0.3743455497382199, 0.5654450261780105, 0.7495636998254799, 0.9467713787085514, 0.8595113438045375, 0.6884816753926701, 0.4965095986038394, 0.3036649214659686, 0.2617801047120419, 0.22251308900523561, 0.22600349040139617, 0.21204188481675393, 0.9406631762652705, 0.27486910994764396, 0.03315881326352531, 0.03228621291448516, 0.03228621291448516, 0.03228621291448516, 0.03228621291448516, 0.03228621291448516, 0.03228621291448516, 0.03228621291448516, 0.8821989528795812, 0.034031413612565446, 0.053228621291448515, 0.03664921465968586, 0.03664921465968586, 0.8900523560209425, 0.7085514834205934, 0.037521815008726006, 0.03664921465968586, 0.037521815008726006, 0.037521815008726006, 0.03664921465968586, 0.03664921465968586, 0.03664921465968586, 0.037521815008726006, 0.03926701570680628, 0.04013961605584642, 0.04013961605584642, 0.8760907504363001, 0.04013961605584642, 0.04013961605584642, 0.04013961605584642, 0.041884816753926704, 0.041884816753926704, 0.041884816753926704, 0.04275741710296684, 0.04275741710296684, 0.05410122164048865, 0.06980802792321117, 0.08987783595113438, 0.11867364746945899, 0.20157068062827224, 0.893542757417103], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/HeLo.gap.json b/pfam_gap_rates/HeLo.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..79f158eef2307913dbf138d8ac92f283e7189a8a
--- /dev/null
+++ b/pfam_gap_rates/HeLo.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Helicase_C_2.gap.json b/pfam_gap_rates/Helicase_C_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..490b34affd4d778bcb1b2a44d8ce0e8e82a29b3a
--- /dev/null
+++ b/pfam_gap_rates/Helicase_C_2.gap.json
@@ -0,0 +1 @@
+{"family": "Helicase_C_2", "n_seqs": 2705, "length": 211, "gap_rates": [0.7508317929759705, 0.49463955637707946, 0.3637707948243993, 0.2609981515711645, 0.21811460258780038, 0.1844731977818854, 0.1523105360443623, 0.12791127541589647, 0.10536044362292052, 0.08059149722735674, 0.07319778188539741, 0.0709796672828096, 0.07024029574861368, 0.06913123844731978, 0.06839186691312385, 0.06765249537892791, 0.06728280961182995, 0.06765249537892791, 0.06728280961182995, 0.066543438077634, 0.066543438077634, 0.06543438077634012, 0.06580406654343808, 0.06543438077634012, 0.06469500924214418, 0.06432532347504621, 0.06506469500924214, 0.06469500924214418, 0.06321626617375231, 0.06321626617375231, 0.06321626617375231, 0.06580406654343808, 0.08761552680221811, 0.7756007393715342, 0.7885397412199631, 0.9297597042513863, 0.7855822550831792, 0.766358595194085, 0.24584103512014788, 0.366728280961183, 0.3415896487985213, 0.12791127541589647, 0.08872458410351201, 0.8872458410351202, 0.9168207024029574, 0.9131238447319778, 0.8820702402957487, 0.06617375231053604, 0.061367837338262475, 0.06062846580406654, 0.06506469500924214, 0.07541589648798522, 0.5648798521256931, 0.8695009242144177, 0.8417744916820702, 0.5131238447319778, 0.06913123844731978, 0.8798521256931608, 0.06321626617375231, 0.061367837338262475, 0.05878003696857671, 0.051386321626617375, 0.04953789279112754, 0.04842883548983364, 0.04731977818853974, 0.046580406654343806, 0.04768946395563771, 0.046950092421441776, 0.04584103512014787, 0.04621072088724584, 0.046950092421441776, 0.5626617375231053, 0.8022181146025879, 0.8750462107208873, 0.8975970425138632, 0.9075785582255084, 0.9412199630314233, 0.9493530499075785, 0.9304990757855822, 0.9024029574861367, 0.8861367837338262, 0.8247689463955638, 0.588170055452865, 0.48317929759704253, 0.4502772643253235, 0.049168207024029575, 0.03844731977818854, 0.03770794824399261, 0.03844731977818854, 0.03955637707948244, 0.03844731977818854, 0.03733826247689464, 0.038817005545286505, 0.039186691312384475, 0.05101663585951941, 0.4743068391866913, 0.4702402957486137, 0.05545286506469501, 0.03364140480591497, 0.034011090573012936, 0.03364140480591497, 0.03364140480591497, 0.03364140480591497, 0.03364140480591497, 0.033271719038817, 0.03364140480591497, 0.03770794824399261, 0.03622920517560074, 0.03475046210720887, 0.03364140480591497, 0.03290203327171904, 0.031423290203327174, 0.030683918669131238, 0.031423290203327174, 0.029944547134935304, 0.029574861367837338, 0.031053604436229204, 0.031423290203327174, 0.031053604436229204, 0.030683918669131238, 0.03216266173752311, 0.05508317929759704, 0.03807763401109057, 0.11682070240295749, 0.07171903881700555, 0.03992606284658041, 0.041035120147874304, 0.08798521256931609, 0.03955637707948244, 0.036598890942698706, 0.036598890942698706, 0.04288354898336414, 0.04325323475046211, 0.05878003696857671, 0.09426987060998152, 0.09131238447319778, 0.10499075785582256, 0.11016635859519408, 0.09870609981515711, 0.09648798521256932, 0.7929759704251387, 0.8365988909426987, 0.8802218114602588, 0.9079482439926063, 0.933086876155268, 0.9404805914972274, 0.945286506469501, 0.9493530499075785, 0.9430683918669132, 0.9393715341959334, 0.9190388170055452, 0.8924214417744917, 0.8650646950092421, 0.8055452865064695, 0.7807763401109057, 0.7382624768946395, 0.10129390018484288, 0.05804066543438078, 0.048798521256931605, 0.041035120147874304, 0.03733826247689464, 0.036598890942698706, 0.036598890942698706, 0.03585951940850277, 0.03585951940850277, 0.03622920517560074, 0.03622920517560074, 0.03512014787430684, 0.03475046210720887, 0.03585951940850277, 0.036598890942698706, 0.03733826247689464, 0.03770794824399261, 0.036968576709796676, 0.03844731977818854, 0.04029574861367837, 0.041035120147874304, 0.04325323475046211, 0.04251386321626617, 0.043992606284658044, 0.043992606284658044, 0.043992606284658044, 0.043622920517560074, 0.043622920517560074, 0.043622920517560074, 0.04325323475046211, 0.043622920517560074, 0.04436229205175601, 0.04473197781885398, 0.04510166358595194, 0.04805914972273567, 0.061367837338262475, 0.06728280961182995, 0.08243992606284659, 0.08539741219963032, 0.09020332717190388, 0.09648798521256932, 0.9471349353049907, 0.1256931608133087, 0.1345656192236599, 0.19038817005545286, 0.1878003696857671, 0.15009242144177448, 0.15194085027726434, 0.15489833641404807, 0.15933456561922366, 0.1689463955637708, 0.17744916820702403, 0.18151571164510166, 0.26876155268022184, 0.49057301293900185], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Hemocyanin_C.gap.json b/pfam_gap_rates/Hemocyanin_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..da9a5e0f698b54466f51128b4898d12ec0868fda
--- /dev/null
+++ b/pfam_gap_rates/Hemocyanin_C.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Hen1_L.gap.json b/pfam_gap_rates/Hen1_L.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..05ddd5502c2f55a7ab44ac98f3bfe89d6f16a4ca
--- /dev/null
+++ b/pfam_gap_rates/Hen1_L.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Hexapep_2.gap.json b/pfam_gap_rates/Hexapep_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..2f3bf124c007e3731f0df04f2d658784b3eb9345
--- /dev/null
+++ b/pfam_gap_rates/Hexapep_2.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Hus1.gap.json b/pfam_gap_rates/Hus1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..81dea7fa7f65e2a14dc02fbe77eb7e427a01d909
--- /dev/null
+++ b/pfam_gap_rates/Hus1.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/IBB.gap.json b/pfam_gap_rates/IBB.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..0a2dfa307e24907ba75a1cb11c09ced3de354607
--- /dev/null
+++ b/pfam_gap_rates/IBB.gap.json
@@ -0,0 +1 @@
+{"family": "IBB", "n_seqs": 683, "length": 106, "gap_rates": [0.2240117130307467, 0.19472913616398244, 0.17569546120058566, 0.15666178623718888, 0.14348462664714495, 0.13469985358711567, 0.13030746705710103, 0.10980966325036604, 0.10102489019033675, 0.37920937042459735, 0.7935578330893118, 0.11566617862371889, 0.10834553440702782, 0.07759882869692533, 0.06149341142020498, 0.03367496339677892, 0.027818448023426062, 0.02635431918008785, 0.017569546120058566, 0.017569546120058566, 0.017569546120058566, 0.013177159590043924, 0.01171303074670571, 0.01171303074670571, 0.01171303074670571, 0.010248901903367497, 0.010248901903367497, 0.010248901903367497, 0.008784773060029283, 0.0029282576866764276, 0.0029282576866764276, 0.0029282576866764276, 0.0029282576866764276, 0.0029282576866764276, 0.0, 0.0014641288433382138, 0.004392386530014641, 0.004392386530014641, 0.004392386530014641, 0.004392386530014641, 0.004392386530014641, 0.004392386530014641, 0.16691068814055637, 0.17569546120058566, 0.7789165446559297, 0.8272327964860908, 0.8711566617862372, 0.9472913616398243, 0.91800878477306, 0.8433382137628112, 0.7979502196193266, 0.7335285505124451, 0.33382137628111275, 0.39092240117130306, 0.22547584187408493, 0.1390922401171303, 0.14055636896046853, 0.12152269399707175, 0.12005856515373353, 0.14202049780380674, 0.1390922401171303, 0.1581259150805271, 0.20351390922401172, 0.1581259150805271, 0.677891654465593, 0.7906295754026355, 0.8667642752562226, 0.9033674963396779, 0.9267935578330894, 0.9209370424597365, 0.8887262079062958, 0.8155197657393851, 0.7423133235724744, 0.568081991215227, 0.25768667642752563, 0.28257686676427524, 0.2020497803806735, 0.18301610541727673, 0.13469985358711567, 0.09956076134699854, 0.0951683748169839, 0.09663250366032211, 0.0951683748169839, 0.09809663250366032, 0.09809663250366032, 0.10248901903367497, 0.09809663250366032, 0.09956076134699854, 0.09956076134699854, 0.10102489019033675, 0.10248901903367497, 0.10395314787701318, 0.1054172767203514, 0.10834553440702782, 0.10980966325036604, 0.11420204978038068, 0.1171303074670571, 0.12152269399707175, 0.1273792093704246, 0.13616398243045388, 0.1390922401171303, 0.14641288433382138, 0.15226939970717424, 0.16105417276720352, 0.2005856515373353, 0.31771595900439237], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/IDEAL.gap.json b/pfam_gap_rates/IDEAL.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ae1d237892a7fd2aed663fb5f95dad7e877e6b7e
--- /dev/null
+++ b/pfam_gap_rates/IDEAL.gap.json
@@ -0,0 +1 @@
+{"family": "IDEAL", "n_seqs": 279, "length": 37, "gap_rates": [0.4910394265232975, 0.37992831541218636, 0.2974910394265233, 0.2724014336917563, 0.26523297491039427, 0.21505376344086022, 0.2007168458781362, 0.15053763440860216, 0.13620071684587814, 0.08960573476702509, 0.04659498207885305, 0.03225806451612903, 0.021505376344086023, 0.017921146953405017, 0.017921146953405017, 0.007168458781362007, 0.0035842293906810036, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0035842293906810036, 0.0035842293906810036, 0.0035842293906810036, 0.007168458781362007, 0.025089605734767026, 0.03942652329749104, 0.053763440860215055, 0.08602150537634409, 0.1863799283154122, 0.3154121863799283], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/IGR.gap.json b/pfam_gap_rates/IGR.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..2e9c9ccd10f970139ec76495cc76f74911c90030
--- /dev/null
+++ b/pfam_gap_rates/IGR.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/IIGP.gap.json b/pfam_gap_rates/IIGP.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..3c8e82383989b02348ee9671cc6a38a38cdea79e
--- /dev/null
+++ b/pfam_gap_rates/IIGP.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/IL17.gap.json b/pfam_gap_rates/IL17.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..cec7e11a04cbb884377acb8f0a89aac9f823e3a4
--- /dev/null
+++ b/pfam_gap_rates/IL17.gap.json
@@ -0,0 +1 @@
+{"family": "IL17", "n_seqs": 206, "length": 90, "gap_rates": [0.24271844660194175, 0.1650485436893204, 0.07281553398058252, 0.04854368932038835, 0.043689320388349516, 0.043689320388349516, 0.038834951456310676, 0.038834951456310676, 0.024271844660194174, 0.019417475728155338, 0.019417475728155338, 0.019417475728155338, 0.019417475728155338, 0.019417475728155338, 0.014563106796116505, 0.0048543689320388345, 0.0048543689320388345, 0.0048543689320388345, 0.0048543689320388345, 0.009708737864077669, 0.0048543689320388345, 0.0048543689320388345, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0048543689320388345, 0.0, 0.043689320388349516, 0.04854368932038835, 0.3932038834951456, 0.19902912621359223, 0.1941747572815534, 0.19902912621359223, 0.14563106796116504, 0.17475728155339806, 0.13106796116504854, 0.05825242718446602, 0.9368932038834952, 0.019417475728155338, 0.014563106796116505, 0.014563106796116505, 0.014563106796116505, 0.014563106796116505, 0.014563106796116505, 0.014563106796116505, 0.014563106796116505, 0.014563106796116505, 0.014563106796116505, 0.014563106796116505, 0.014563106796116505, 0.014563106796116505, 0.014563106796116505, 0.019417475728155338, 0.024271844660194174, 0.024271844660194174, 0.6699029126213593, 0.8446601941747572, 0.9029126213592233, 0.912621359223301, 0.9077669902912622, 0.8689320388349514, 0.8058252427184466, 0.5631067961165048, 0.35436893203883496, 0.23786407766990292, 0.21844660194174756, 0.10679611650485436, 0.05339805825242718, 0.02912621359223301, 0.03398058252427184, 0.038834951456310676, 0.043689320388349516, 0.04854368932038835, 0.043689320388349516, 0.043689320388349516, 0.043689320388349516, 0.043689320388349516, 0.043689320388349516, 0.05339805825242718, 0.05339805825242718, 0.06310679611650485, 0.06796116504854369, 0.0825242718446602, 0.0825242718446602, 0.0825242718446602, 0.17475728155339806, 0.441747572815534], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/IMD.gap.json b/pfam_gap_rates/IMD.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..8f2acd5075fc4d725769852846d97bb5fa289965
--- /dev/null
+++ b/pfam_gap_rates/IMD.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/IMS.gap.json b/pfam_gap_rates/IMS.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..776583a41cf0b783974dd2b539d23992aea13b5e
--- /dev/null
+++ b/pfam_gap_rates/IMS.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/IPPT.gap.json b/pfam_gap_rates/IPPT.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c7ab144d888dc887235f9aa9fe3e33fd3a39a418
--- /dev/null
+++ b/pfam_gap_rates/IPPT.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/ISN1.gap.json b/pfam_gap_rates/ISN1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..6d9721a63854f9dad379aa7c5b275fc93952c765
--- /dev/null
+++ b/pfam_gap_rates/ISN1.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Ifi-6-16.gap.json b/pfam_gap_rates/Ifi-6-16.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ebe6147d194e77238097f1ec213a882959b3909e
--- /dev/null
+++ b/pfam_gap_rates/Ifi-6-16.gap.json
@@ -0,0 +1 @@
+{"family": "Ifi-6-16", "n_seqs": 285, "length": 84, "gap_rates": [0.6877192982456141, 0.5017543859649123, 0.3473684210526316, 0.2736842105263158, 0.22456140350877193, 0.18596491228070175, 0.16842105263157894, 0.14385964912280702, 0.12631578947368421, 0.12280701754385964, 0.11228070175438597, 0.08070175438596491, 0.7964912280701755, 0.8210526315789474, 0.9368421052631579, 0.8035087719298246, 0.7929824561403509, 0.056140350877192984, 0.028070175438596492, 0.021052631578947368, 0.010526315789473684, 0.010526315789473684, 0.010526315789473684, 0.010526315789473684, 0.010526315789473684, 0.010526315789473684, 0.014035087719298246, 0.010526315789473684, 0.010526315789473684, 0.010526315789473684, 0.010526315789473684, 0.010526315789473684, 0.010526315789473684, 0.010526315789473684, 0.010526315789473684, 0.010526315789473684, 0.0, 0.0, 0.0035087719298245615, 0.0035087719298245615, 0.0035087719298245615, 0.6596491228070176, 0.6877192982456141, 0.6877192982456141, 0.5403508771929825, 0.40350877192982454, 0.03508771929824561, 0.031578947368421054, 0.010526315789473684, 0.010526315789473684, 0.031578947368421054, 0.03508771929824561, 0.010526315789473684, 0.007017543859649123, 0.007017543859649123, 0.007017543859649123, 0.010526315789473684, 0.014035087719298246, 0.014035087719298246, 0.014035087719298246, 0.014035087719298246, 0.017543859649122806, 0.03508771929824561, 0.06666666666666667, 0.1368421052631579, 0.17192982456140352, 0.18596491228070175, 0.20701754385964913, 0.22105263157894736, 0.24561403508771928, 0.9403508771929825, 0.2771929824561403, 0.27017543859649124, 0.2771929824561403, 0.2736842105263158, 0.2771929824561403, 0.28421052631578947, 0.2982456140350877, 0.312280701754386, 0.3192982456140351, 0.3929824561403509, 0.47017543859649125, 0.6035087719298246, 0.9087719298245615], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Indigoidine_A.gap.json b/pfam_gap_rates/Indigoidine_A.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..8961cf50ccf96538e00e7d478dcd57fb19b214db
--- /dev/null
+++ b/pfam_gap_rates/Indigoidine_A.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Inhibitor_I36.gap.json b/pfam_gap_rates/Inhibitor_I36.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f9068651d2bdc6a6e0a660cc7c840e404dfcf6c3
--- /dev/null
+++ b/pfam_gap_rates/Inhibitor_I36.gap.json
@@ -0,0 +1 @@
+{"family": "Inhibitor_I36", "n_seqs": 155, "length": 92, "gap_rates": [0.6903225806451613, 0.567741935483871, 0.38064516129032255, 0.3096774193548387, 0.24516129032258063, 0.2, 0.15483870967741936, 0.14838709677419354, 0.10967741935483871, 0.08387096774193549, 0.05161290322580645, 0.04516129032258064, 0.03225806451612903, 0.025806451612903226, 0.0064516129032258064, 0.0064516129032258064, 0.0064516129032258064, 0.0064516129032258064, 0.01935483870967742, 0.012903225806451613, 0.012903225806451613, 0.0064516129032258064, 0.9483870967741935, 0.012903225806451613, 0.0, 0.0, 0.0, 0.0064516129032258064, 0.0, 0.0, 0.0, 0.0, 0.0064516129032258064, 0.0, 0.36774193548387096, 0.5612903225806452, 0.6774193548387096, 0.7612903225806451, 0.8258064516129032, 0.9032258064516129, 0.9290322580645162, 0.9354838709677419, 0.9483870967741935, 0.9354838709677419, 0.9225806451612903, 0.8774193548387097, 0.7935483870967742, 0.7096774193548387, 0.6451612903225806, 0.4645161290322581, 0.27741935483870966, 0.1032258064516129, 0.2064516129032258, 0.1870967741935484, 0.11612903225806452, 0.10967741935483871, 0.10967741935483871, 0.0967741935483871, 0.04516129032258064, 0.03225806451612903, 0.01935483870967742, 0.9419354838709677, 0.9290322580645162, 0.0, 0.0, 0.012903225806451613, 0.012903225806451613, 0.01935483870967742, 0.01935483870967742, 0.9483870967741935, 0.9419354838709677, 0.025806451612903226, 0.03225806451612903, 0.03870967741935484, 0.864516129032258, 0.05161290322580645, 0.05806451612903226, 0.05806451612903226, 0.05806451612903226, 0.05806451612903226, 0.06451612903225806, 0.07096774193548387, 0.1032258064516129, 0.12258064516129032, 0.13548387096774195, 0.14838709677419354, 0.1870967741935484, 0.22580645161290322, 0.34838709677419355, 0.49032258064516127, 0.6967741935483871, 0.8838709677419355], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Innexin.gap.json b/pfam_gap_rates/Innexin.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..495e45738709699fe2ade07a596c968d97fdcbf5
--- /dev/null
+++ b/pfam_gap_rates/Innexin.gap.json
@@ -0,0 +1 @@
+{"family": "Innexin", "n_seqs": 379, "length": 420, "gap_rates": [0.6068601583113457, 0.45646437994722955, 0.45118733509234826, 0.41952506596306066, 0.36939313984168864, 0.36939313984168864, 0.36939313984168864, 0.36675461741424803, 0.37994722955145116, 0.3641160949868074, 0.3641160949868074, 0.3641160949868074, 0.36147757255936674, 0.36147757255936674, 0.35883905013192613, 0.3245382585751979, 0.32717678100263853, 0.3245382585751979, 0.3245382585751979, 0.3245382585751979, 0.3245382585751979, 0.3245382585751979, 0.3245382585751979, 0.32189973614775724, 0.31926121372031663, 0.31926121372031663, 0.316622691292876, 0.31398416886543534, 0.31398416886543534, 0.3034300791556728, 0.3087071240105541, 0.31398416886543534, 0.316622691292876, 0.32189973614775724, 0.32189973614775724, 0.31926121372031663, 0.34300791556728233, 0.3562005277044855, 0.38258575197889183, 0.43007915567282323, 0.39313984168865435, 0.37994722955145116, 0.941952506596306, 0.3482849604221636, 0.3482849604221636, 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\ No newline at end of file
diff --git a/pfam_gap_rates/Inos-1-P_synth.gap.json b/pfam_gap_rates/Inos-1-P_synth.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..172e87c3cb8ac475d190dc127b9ca6bb68802247
--- /dev/null
+++ b/pfam_gap_rates/Inos-1-P_synth.gap.json
@@ -0,0 +1 @@
+{"family": "Inos-1-P_synth", "n_seqs": 802, "length": 126, "gap_rates": [0.034912718204488775, 0.034912718204488775, 0.03366583541147132, 0.032418952618453865, 0.03117206982543641, 0.03117206982543641, 0.03117206982543641, 0.03117206982543641, 0.03117206982543641, 0.03117206982543641, 0.03117206982543641, 0.028678304239401497, 0.028678304239401497, 0.028678304239401497, 0.02743142144638404, 0.026184538653366583, 0.02493765586034913, 0.02493765586034913, 0.02119700748129676, 0.02119700748129676, 0.0199501246882793, 0.0199501246882793, 0.0199501246882793, 0.018703241895261846, 0.018703241895261846, 0.018703241895261846, 0.018703241895261846, 0.018703241895261846, 0.017456359102244388, 0.017456359102244388, 0.018703241895261846, 0.016209476309226933, 0.016209476309226933, 0.016209476309226933, 0.014962593516209476, 0.014962593516209476, 0.014962593516209476, 0.014962593516209476, 0.02743142144638404, 0.02743142144638404, 0.014962593516209476, 0.016209476309226933, 0.016209476309226933, 0.014962593516209476, 0.016209476309226933, 0.016209476309226933, 0.01371571072319202, 0.01371571072319202, 0.01371571072319202, 0.01371571072319202, 0.01371571072319202, 0.01371571072319202, 0.01371571072319202, 0.01371571072319202, 0.014962593516209476, 0.014962593516209476, 0.012468827930174564, 0.012468827930174564, 0.01371571072319202, 0.01371571072319202, 0.11221945137157108, 0.046134663341645885, 0.04738154613466334, 0.1546134663341646, 0.25561097256857856, 0.45885286783042395, 0.49501246882793015, 0.8865336658354115, 0.9301745635910225, 0.9339152119700748, 0.9413965087281796, 0.9463840399002493, 0.942643391521197, 0.9339152119700748, 0.9339152119700748, 0.9002493765586035, 0.5910224438902744, 0.4925187032418953, 0.42768079800498754, 0.3491271820448878, 0.29177057356608477, 0.15211970074812967, 0.06982543640897755, 0.02493765586034913, 0.02493765586034913, 0.017456359102244388, 0.6134663341645885, 0.6134663341645885, 0.6109725685785536, 0.014962593516209476, 0.014962593516209476, 0.01371571072319202, 0.014962593516209476, 0.014962593516209476, 0.01371571072319202, 0.01371571072319202, 0.012468827930174564, 0.012468827930174564, 0.012468827930174564, 0.012468827930174564, 0.01371571072319202, 0.01371571072319202, 0.01371571072319202, 0.01371571072319202, 0.01371571072319202, 0.014962593516209476, 0.016209476309226933, 0.016209476309226933, 0.016209476309226933, 0.016209476309226933, 0.017456359102244388, 0.017456359102244388, 0.017456359102244388, 0.017456359102244388, 0.017456359102244388, 0.017456359102244388, 0.017456359102244388, 0.0199501246882793, 0.0199501246882793, 0.02119700748129676, 0.02119700748129676, 0.022443890274314215, 0.022443890274314215, 0.022443890274314215, 0.02493765586034913, 0.059850374064837904], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Ins_P5_2-kin.gap.json b/pfam_gap_rates/Ins_P5_2-kin.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..fda7b56cdb5a38f6fd8a1f4dfef221425200a355
--- /dev/null
+++ b/pfam_gap_rates/Ins_P5_2-kin.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Ion_trans.gap.json b/pfam_gap_rates/Ion_trans.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..16620fac5c6b230b0986a13804f4e9549927b1a1
--- /dev/null
+++ b/pfam_gap_rates/Ion_trans.gap.json
@@ -0,0 +1 @@
+{"family": "Ion_trans", "n_seqs": 5000, "length": 390, "gap_rates": [0.9272, 0.645, 0.489, 0.3866, 0.3464, 0.31, 0.2824, 0.2654, 0.253, 0.242, 0.2346, 0.2298, 0.2232, 0.2194, 0.2166, 0.2144, 0.2126, 0.2112, 0.2104, 0.2098, 0.2084, 0.2492, 0.2302, 0.2164, 0.2176, 0.215, 0.2024, 0.817, 0.8364, 0.848, 0.8652, 0.8862, 0.9098, 0.9264, 0.9318, 0.9404, 0.9466, 0.938, 0.9294, 0.9194, 0.8962, 0.8752, 0.8572, 0.8402, 0.8236, 0.81, 0.3004, 0.3622, 0.3586, 0.3678, 0.5278, 0.729, 0.8796, 0.9498, 0.9258, 0.8234, 0.594, 0.1762, 0.1652, 0.157, 0.1492, 0.1448, 0.1414, 0.1404, 0.1368, 0.1352, 0.1336, 0.132, 0.1282, 0.1274, 0.127, 0.1258, 0.125, 0.1256, 0.1262, 0.1254, 0.1246, 0.1234, 0.1208, 0.1202, 0.1222, 0.1332, 0.1266, 0.1188, 0.7384, 0.7574, 0.7768, 0.7988, 0.812, 0.9, 0.9422, 0.9486, 0.9456, 0.9362, 0.8602, 0.8082, 0.7834, 0.7708, 0.7496, 0.6198, 0.5916, 0.5766, 0.4378, 0.1836, 0.1036, 0.0996, 0.0974, 0.0974, 0.0968, 0.1864, 0.162, 0.1002, 0.0962, 0.0942, 0.091, 0.0896, 0.0886, 0.0882, 0.0874, 0.087, 0.086, 0.0874, 0.0884, 0.0898, 0.0992, 0.1006, 0.628, 0.7106, 0.8052, 0.8916, 0.9494, 0.9222, 0.8598, 0.7576, 0.688, 0.6146, 0.1126, 0.4766, 0.5704, 0.31, 0.438, 0.5904, 0.6846, 0.7966, 0.857, 0.8916, 0.919, 0.9396, 0.9452, 0.9326, 0.9062, 0.8772, 0.8254, 0.7578, 0.6384, 0.5114, 0.3932, 0.2592, 0.1498, 0.1022, 0.0842, 0.0774, 0.0712, 0.068, 0.0668, 0.0652, 0.0644, 0.0674, 0.068, 0.9122, 0.0698, 0.07, 0.063, 0.0628, 0.0622, 0.063, 0.0652, 0.0664, 0.0664, 0.0748, 0.076, 0.0772, 0.0764, 0.0762, 0.1326, 0.131, 0.1098, 0.1614, 0.1396, 0.1344, 0.1354, 0.1102, 0.0878, 0.082, 0.0818, 0.0816, 0.081, 0.0796, 0.0792, 0.0836, 0.081, 0.0804, 0.0786, 0.0788, 0.0782, 0.0826, 0.0774, 0.0762, 0.0768, 0.076, 0.0762, 0.0758, 0.0762, 0.0766, 0.079, 0.0784, 0.0812, 0.1312, 0.1192, 0.0868, 0.087, 0.5568, 0.515, 0.5056, 0.4862, 0.4902, 0.6418, 0.6386, 0.7146, 0.7206, 0.729, 0.7412, 0.7584, 0.7716, 0.7854, 0.8042, 0.8158, 0.8294, 0.8502, 0.8596, 0.8694, 0.8802, 0.896, 0.908, 0.9174, 0.9222, 0.9294, 0.9348, 0.944, 0.948, 0.9384, 0.9322, 0.9244, 0.9194, 0.912, 0.9018, 0.8858, 0.8752, 0.864, 0.8542, 0.8424, 0.8232, 0.8104, 0.795, 0.7798, 0.7646, 0.7498, 0.7328, 0.725, 0.7174, 0.7126, 0.646, 0.6276, 0.7486, 0.8052, 0.8538, 0.9156, 0.9386, 0.8876, 0.8322, 0.779, 0.7366, 0.531, 0.528, 0.4576, 0.3856, 0.3226, 0.2564, 0.2294, 0.1812, 0.2348, 0.1914, 0.1708, 0.1286, 0.1108, 0.1062, 0.9278, 0.1256, 0.114, 0.0908, 0.926, 0.9296, 0.9444, 0.9384, 0.9274, 0.9206, 0.0848, 0.084, 0.0834, 0.0834, 0.0822, 0.0824, 0.0828, 0.0826, 0.083, 0.0838, 0.1262, 0.1184, 0.11, 0.114, 0.1132, 0.1618, 0.1294, 0.0982, 0.0978, 0.0982, 0.098, 0.097, 0.0974, 0.0976, 0.1004, 0.1028, 0.1056, 0.1066, 0.6838, 0.7212, 0.7772, 0.7996, 0.8138, 0.897, 0.9068, 0.9198, 0.9484, 0.9286, 0.916, 0.901, 0.883, 0.8086, 0.7948, 0.751, 0.7066, 0.604, 0.47, 0.4336, 0.4218, 0.4146, 0.4088, 0.3824, 0.1082, 0.1054, 0.1056, 0.1058, 0.1066, 0.1066, 0.1064, 0.107, 0.1128, 0.1126, 0.1156, 0.1178, 0.1204, 0.1236, 0.1288, 0.1308, 0.1336, 0.1362, 0.1396, 0.1438, 0.1478, 0.1538, 0.1628, 0.1724, 0.183, 0.2142, 0.262, 0.313, 0.3606, 0.4182, 0.5326, 0.7068], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Isochorismatase.gap.json b/pfam_gap_rates/Isochorismatase.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a388bb12de1c5ac0b995747a51815d8903ddf43c
--- /dev/null
+++ b/pfam_gap_rates/Isochorismatase.gap.json
@@ -0,0 +1 @@
+{"family": "Isochorismatase", "n_seqs": 5000, "length": 230, "gap_rates": [0.63, 0.1322, 0.0934, 0.083, 0.0758, 0.0744, 0.0742, 0.07, 0.0694, 0.0692, 0.0686, 0.0682, 0.068, 0.7848, 0.8506, 0.8734, 0.8588, 0.8384, 0.6736, 0.4524, 0.325, 0.2402, 0.2262, 0.0918, 0.0824, 0.0754, 0.0626, 0.0606, 0.0592, 0.056, 0.0552, 0.0534, 0.0532, 0.0526, 0.0518, 0.0516, 0.0514, 0.0504, 0.0506, 0.05, 0.0494, 0.0496, 0.0488, 0.0622, 0.129, 0.1116, 0.1024, 0.1262, 0.1132, 0.0564, 0.0472, 0.0464, 0.046, 0.046, 0.0462, 0.0472, 0.0468, 0.0456, 0.6354, 0.703, 0.759, 0.7962, 0.8122, 0.8194, 0.8414, 0.8756, 0.9294, 0.943, 0.9482, 0.9464, 0.9386, 0.9176, 0.8636, 0.824, 0.8158, 0.8062, 0.7834, 0.729, 0.6696, 0.6126, 0.5176, 0.4872, 0.475, 0.4572, 0.4116, 0.3932, 0.3914, 0.3884, 0.3844, 0.38, 0.3528, 0.2976, 0.2674, 0.259, 0.2524, 0.2296, 0.1998, 0.0998, 0.0978, 0.0842, 0.066, 0.045, 0.0442, 0.042, 0.041, 0.0392, 0.038, 0.0406, 0.041, 0.0576, 0.055, 0.1164, 0.1586, 0.183, 0.877, 0.9254, 0.7856, 0.0518, 0.0432, 0.0366, 0.0376, 0.035, 0.0336, 0.9326, 0.0316, 0.0302, 0.8544, 0.8588, 0.8872, 0.885, 0.8584, 0.8178, 0.0386, 0.0372, 0.0368, 0.0298, 0.0292, 0.8078, 0.8368, 0.8764, 0.947, 0.8428, 0.8326, 0.7898, 0.1088, 0.049, 0.0442, 0.027, 0.0262, 0.0262, 0.0242, 0.0244, 0.0244, 0.033, 0.0342, 0.0504, 0.0424, 0.023, 0.021, 0.0196, 0.019, 0.019, 0.0188, 0.0182, 0.018, 0.0184, 0.0182, 0.0186, 0.0188, 0.0196, 0.0192, 0.0198, 0.0194, 0.0196, 0.0198, 0.0196, 0.02, 0.0208, 0.0222, 0.0244, 0.026, 0.0268, 0.0274, 0.0268, 0.0282, 0.0284, 0.029, 0.0292, 0.0306, 0.031, 0.0318, 0.0332, 0.0342, 0.036, 0.0378, 0.0422, 0.0474, 0.9012, 0.9238, 0.9318, 0.9426, 0.9442, 0.941, 0.9254, 0.9198, 0.9004, 0.0744, 0.0864, 0.1058, 0.885, 0.133, 0.1416, 0.1498, 0.1592, 0.1672, 0.1756, 0.1828, 0.1874, 0.1962, 0.2494, 0.2534, 0.275, 0.2992, 0.3292, 0.3616, 0.4174, 0.4762, 0.5496, 0.658, 0.902], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/JmjC.gap.json b/pfam_gap_rates/JmjC.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..24efb22355f49270035e96e3e2378fb8cb99372a
--- /dev/null
+++ b/pfam_gap_rates/JmjC.gap.json
@@ -0,0 +1 @@
+{"family": "JmjC", "n_seqs": 2189, "length": 128, "gap_rates": [0.3750571037003198, 0.2914572864321608, 0.28277752398355416, 0.2727272727272727, 0.26496116948378257, 0.25810872544540886, 0.2553677478300594, 0.2444038373686615, 0.2325262677021471, 0.22795797167656465, 0.22293284604842395, 0.2206486980356327, 0.21790772042028322, 0.21425308359981726, 0.20922795797167656, 0.19049794426678848, 0.18592964824120603, 0.17679305619004113, 0.16902695294655093, 0.15806304248515304, 0.15303791685701235, 0.3184102329830973, 0.16217450890817725, 0.11968935587026039, 0.12151667428049337, 0.12014618547281863, 0.11420740063956145, 0.11100959342165373, 0.10461397898583828, 0.10050251256281408, 0.09730470534490634, 0.08862494289629969, 0.08314298766560073, 0.07537688442211055, 0.07766103243490179, 0.07811786203746003, 0.07857469164001828, 0.07948835084513477, 0.08359981726815897, 0.0858839652809502, 0.08862494289629969, 0.08405664687071722, 0.08497030607583371, 0.08314298766560073, 0.07948835084513477, 0.0808588396528095, 0.942439470077661, 0.9040657834627683, 0.10918227501142073, 0.10872544540886249, 0.10644129739607126, 0.09547738693467336, 0.09365006852444038, 0.08953860210141618, 0.4910918227501142, 0.8880767473732298, 0.9104613978985838, 0.942439470077661, 0.9474645957058018, 0.9374143444495203, 0.9031521242576519, 0.5248972133394244, 0.46550936500685247, 0.26724531749657376, 0.2745545911375057, 0.29693924166285973, 0.27409776153494747, 0.2635906806761078, 0.25810872544540886, 0.22887163088168114, 0.21516674280493375, 0.7391502969392416, 0.12928277752398357, 0.09958885335769758, 0.08451347647327546, 0.07811786203746003, 0.07766103243490179, 0.07994518044769301, 0.07857469164001828, 0.07629054362722705, 0.07994518044769301, 0.09090909090909091, 0.09730470534490634, 0.09913202375513934, 0.8702603928734582, 0.6875285518501599, 0.09410689812699863, 0.11694837825491092, 0.12060301507537688, 0.11740520785746916, 0.14344449520328917, 0.11649154865235267, 0.0858839652809502, 0.05756052992233897, 0.05299223389675651, 0.05070808588396528, 0.047967108268615805, 0.04751027866605756, 0.04751027866605756, 0.04568296025582458, 0.04659661946094107, 0.047053449063499314, 0.04842393787117405, 0.04842393787117405, 0.047053449063499314, 0.047967108268615805, 0.04842393787117405, 0.04842393787117405, 0.048880767473732295, 0.04933759707629054, 0.05025125628140704, 0.05025125628140704, 0.05025125628140704, 0.05025125628140704, 0.052535404294198264, 0.054362722704431245, 0.05481955230698949, 0.05664687071722248, 0.06441297396071266, 0.0749200548195523, 0.08040201005025126, 0.08816811329374144, 0.09730470534490634, 0.10370031978072179, 0.11557788944723618, 0.12562814070351758, 0.13704888076747374, 0.2407492005481955], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/KASH.gap.json b/pfam_gap_rates/KASH.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..1d04cada4217be4c9a72b96402153261086cf127
--- /dev/null
+++ b/pfam_gap_rates/KASH.gap.json
@@ -0,0 +1 @@
+{"family": "KASH", "n_seqs": 121, "length": 62, "gap_rates": [0.32231404958677684, 0.14049586776859505, 0.1322314049586777, 0.11570247933884298, 0.11570247933884298, 0.09917355371900827, 0.09917355371900827, 0.09917355371900827, 0.049586776859504134, 0.024793388429752067, 0.01652892561983471, 0.01652892561983471, 0.008264462809917356, 0.049586776859504134, 0.04132231404958678, 0.01652892561983471, 0.024793388429752067, 0.024793388429752067, 0.008264462809917356, 0.008264462809917356, 0.008264462809917356, 0.008264462809917356, 0.008264462809917356, 0.008264462809917356, 0.008264462809917356, 0.01652892561983471, 0.19008264462809918, 0.2231404958677686, 0.19008264462809918, 0.19008264462809918, 0.9421487603305785, 0.9421487603305785, 0.9421487603305785, 0.9421487603305785, 0.008264462809917356, 0.0, 0.0, 0.0, 0.0, 0.01652892561983471, 0.01652892561983471, 0.01652892561983471, 0.024793388429752067, 0.01652892561983471, 0.008264462809917356, 0.01652892561983471, 0.008264462809917356, 0.008264462809917356, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.01652892561983471, 0.17355371900826447, 0.01652892561983471, 0.024793388429752067, 0.024793388429752067, 0.024793388429752067, 0.024793388429752067, 0.2644628099173554], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/KIP1.gap.json b/pfam_gap_rates/KIP1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..0fec43913e5ae03e3d235c2e8107f1c188596d96
--- /dev/null
+++ b/pfam_gap_rates/KIP1.gap.json
@@ -0,0 +1 @@
+{"family": "KIP1", "n_seqs": 359, "length": 75, "gap_rates": [0.40947075208913647, 0.34818941504178275, 0.3286908077994429, 0.27298050139275765, 0.26740947075208915, 0.2646239554317549, 0.2562674094707521, 0.24233983286908078, 0.27019498607242337, 0.22562674094707522, 0.2116991643454039, 0.20055710306406685, 0.1894150417827298, 0.17270194986072424, 0.16991643454038996, 0.16991643454038996, 0.16991643454038996, 0.17270194986072424, 0.16434540389972144, 0.15041782729805014, 0.11977715877437325, 0.1309192200557103, 0.055710306406685235, 0.055710306406685235, 0.055710306406685235, 0.0584958217270195, 0.0584958217270195, 0.055710306406685235, 0.052924791086350974, 0.03899721448467967, 0.03899721448467967, 0.03899721448467967, 0.04178272980501393, 0.04178272980501393, 0.947075208913649, 0.0807799442896936, 0.055710306406685235, 0.04735376044568245, 0.04456824512534819, 0.04456824512534819, 0.03899721448467967, 0.04456824512534819, 0.07242339832869081, 0.07242339832869081, 0.06685236768802229, 0.0584958217270195, 0.055710306406685235, 0.04735376044568245, 0.04456824512534819, 0.04456824512534819, 0.04456824512534819, 0.04456824512534819, 0.03899721448467967, 0.036211699164345405, 0.033426183844011144, 0.036211699164345405, 0.036211699164345405, 0.036211699164345405, 0.033426183844011144, 0.033426183844011144, 0.033426183844011144, 0.033426183844011144, 0.033426183844011144, 0.033426183844011144, 0.033426183844011144, 0.033426183844011144, 0.036211699164345405, 0.036211699164345405, 0.036211699164345405, 0.03899721448467967, 0.03899721448467967, 0.03899721448467967, 0.05013927576601671, 0.0584958217270195, 0.14763231197771587], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/KNOX2.gap.json b/pfam_gap_rates/KNOX2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e2dd789b3e5b8806419973a839023872b6f37f2d
--- /dev/null
+++ b/pfam_gap_rates/KNOX2.gap.json
@@ -0,0 +1 @@
+{"family": "KNOX2", "n_seqs": 295, "length": 52, "gap_rates": [0.8101694915254237, 0.4440677966101695, 0.29152542372881357, 0.16610169491525423, 0.11864406779661017, 0.08135593220338982, 0.07457627118644068, 0.07457627118644068, 0.07457627118644068, 0.07457627118644068, 0.07457627118644068, 0.04406779661016949, 0.030508474576271188, 0.013559322033898305, 0.013559322033898305, 0.013559322033898305, 0.010169491525423728, 0.006779661016949152, 0.006779661016949152, 0.006779661016949152, 0.006779661016949152, 0.006779661016949152, 0.003389830508474576, 0.003389830508474576, 0.003389830508474576, 0.003389830508474576, 0.003389830508474576, 0.003389830508474576, 0.003389830508474576, 0.003389830508474576, 0.003389830508474576, 0.6440677966101694, 0.6440677966101694, 0.6440677966101694, 0.6440677966101694, 0.003389830508474576, 0.003389830508474576, 0.003389830508474576, 0.003389830508474576, 0.006779661016949152, 0.006779661016949152, 0.010169491525423728, 0.013559322033898305, 0.013559322033898305, 0.013559322033898305, 0.01694915254237288, 0.023728813559322035, 0.023728813559322035, 0.023728813559322035, 0.02711864406779661, 0.04067796610169491, 0.22372881355932203], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/KaiB.gap.json b/pfam_gap_rates/KaiB.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..9207eac1505dd514e47590c2da616fbbe23c9236
--- /dev/null
+++ b/pfam_gap_rates/KaiB.gap.json
@@ -0,0 +1 @@
+{"family": "KaiB", "n_seqs": 288, "length": 82, "gap_rates": [0.1597222222222222, 0.034722222222222224, 0.027777777777777776, 0.024305555555555556, 0.020833333333333332, 0.020833333333333332, 0.020833333333333332, 0.017361111111111112, 0.017361111111111112, 0.017361111111111112, 0.020833333333333332, 0.013888888888888888, 0.013888888888888888, 0.013888888888888888, 0.013888888888888888, 0.006944444444444444, 0.006944444444444444, 0.003472222222222222, 0.003472222222222222, 0.003472222222222222, 0.003472222222222222, 0.006944444444444444, 0.003472222222222222, 0.003472222222222222, 0.03125, 0.003472222222222222, 0.003472222222222222, 0.003472222222222222, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.003472222222222222, 0.003472222222222222, 0.003472222222222222, 0.003472222222222222, 0.003472222222222222, 0.003472222222222222, 0.003472222222222222, 0.003472222222222222, 0.006944444444444444, 0.006944444444444444, 0.006944444444444444, 0.013888888888888888, 0.013888888888888888, 0.017361111111111112, 0.017361111111111112, 0.017361111111111112, 0.020833333333333332, 0.017361111111111112, 0.013888888888888888, 0.013888888888888888, 0.013888888888888888, 0.013888888888888888, 0.017361111111111112, 0.017361111111111112, 0.017361111111111112, 0.017361111111111112, 0.027777777777777776, 0.041666666666666664, 0.04861111111111111, 0.052083333333333336, 0.07291666666666667, 0.10069444444444445, 0.1111111111111111, 0.1284722222222222, 0.16666666666666666, 0.2881944444444444, 0.7361111111111112], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Kelch_3.gap.json b/pfam_gap_rates/Kelch_3.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..efe639b9f76fd48ed9f083d2356a4d2de3dd7ade
--- /dev/null
+++ b/pfam_gap_rates/Kelch_3.gap.json
@@ -0,0 +1 @@
+{"family": "Kelch_3", "n_seqs": 2690, "length": 72, "gap_rates": [0.6557620817843867, 0.3100371747211896, 0.15315985130111523, 0.029368029739776952, 0.019330855018587362, 0.015613382899628252, 0.01412639405204461, 0.008921933085501859, 0.007434944237918215, 0.007434944237918215, 0.007063197026022305, 0.5933085501858736, 0.8003717472118959, 0.9137546468401487, 0.8713754646840148, 0.779182156133829, 0.4308550185873606, 0.07843866171003717, 0.9364312267657993, 0.024163568773234202, 0.023048327137546468, 0.020074349442379184, 0.0011152416356877324, 0.9141263940520447, 0.8873605947955391, 0.001486988847583643, 0.0003717472118959108, 0.0003717472118959108, 0.0003717472118959108, 0.0003717472118959108, 0.0, 0.0, 0.0, 0.9423791821561338, 0.937918215613383, 0.0, 0.003345724907063197, 0.0018587360594795538, 0.8858736059479554, 0.879182156133829, 0.0, 0.0007434944237918215, 0.0007434944237918215, 0.9137546468401487, 0.9412639405204462, 0.9066914498141264, 0.004089219330855019, 0.0026022304832713753, 0.28066914498141265, 0.8252788104089219, 0.9368029739776952, 0.8717472118959108, 0.3973977695167286, 0.2178438661710037, 0.004089219330855019, 0.012267657992565056, 0.010037174721189592, 0.9486988847583643, 0.9055762081784386, 0.011895910780669145, 0.012267657992565056, 0.9263940520446097, 0.01486988847583643, 0.020446096654275093, 0.030483271375464683, 0.046096654275092935, 0.051301115241635685, 0.07026022304832713, 0.09442379182156134, 0.17286245353159851, 0.4513011152416357, 0.7869888475836431], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Keratin_2_head.gap.json b/pfam_gap_rates/Keratin_2_head.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..7452b12ce73d9f86c8709cf94319f3f1c703bf36
--- /dev/null
+++ b/pfam_gap_rates/Keratin_2_head.gap.json
@@ -0,0 +1 @@
+{"family": "Keratin_2_head", "n_seqs": 340, "length": 174, "gap_rates": [0.65, 0.6205882352941177, 0.6088235294117647, 0.6088235294117647, 0.6058823529411764, 0.6058823529411764, 0.6058823529411764, 0.6058823529411764, 0.6058823529411764, 0.6411764705882353, 0.5970588235294118, 0.5941176470588235, 0.6, 0.6147058823529412, 0.6088235294117647, 0.6058823529411764, 0.5941176470588235, 0.5764705882352941, 0.5852941176470589, 0.5647058823529412, 0.5588235294117647, 0.5764705882352941, 0.5764705882352941, 0.5794117647058824, 0.5764705882352941, 0.5705882352941176, 0.5794117647058824, 0.5941176470588235, 0.7617647058823529, 0.7235294117647059, 0.95, 0.711764705882353, 0.7, 0.6676470588235294, 0.6794117647058824, 0.6882352941176471, 0.9235294117647059, 0.8058823529411765, 0.6941176470588235, 0.65, 0.6088235294117647, 0.5911764705882353, 0.5676470588235294, 0.5441176470588235, 0.538235294117647, 0.538235294117647, 0.538235294117647, 0.538235294117647, 0.538235294117647, 0.538235294117647, 0.5411764705882353, 0.5441176470588235, 0.5411764705882353, 0.5411764705882353, 0.538235294117647, 0.5647058823529412, 0.5588235294117647, 0.5558823529411765, 0.5352941176470588, 0.5323529411764706, 0.5264705882352941, 0.5323529411764706, 0.5294117647058824, 0.5264705882352941, 0.5323529411764706, 0.5264705882352941, 0.5264705882352941, 0.5794117647058824, 0.6, 0.7382352941176471, 0.7647058823529411, 0.7705882352941177, 0.9264705882352942, 0.7764705882352941, 0.7176470588235294, 0.7147058823529412, 0.8, 0.7735294117647059, 0.7147058823529412, 0.6147058823529412, 0.5735294117647058, 0.5588235294117647, 0.5264705882352941, 0.5147058823529411, 0.5117647058823529, 0.5205882352941177, 0.5764705882352941, 0.5970588235294118, 0.9382352941176471, 0.5029411764705882, 0.4970588235294118, 0.5029411764705882, 0.5117647058823529, 0.5029411764705882, 0.6617647058823529, 0.6088235294117647, 0.5735294117647058, 0.49411764705882355, 0.45588235294117646, 0.6411764705882353, 0.5411764705882353, 0.4176470588235294, 0.35294117647058826, 0.3323529411764706, 0.3323529411764706, 0.3235294117647059, 0.9235294117647059, 0.8323529411764706, 0.34705882352941175, 0.29705882352941176, 0.27647058823529413, 0.25588235294117645, 0.24705882352941178, 0.2529411764705882, 0.25588235294117645, 0.6411764705882353, 0.5911764705882353, 0.9264705882352942, 0.6058823529411764, 0.5823529411764706, 0.36470588235294116, 0.31176470588235294, 0.21470588235294116, 0.19705882352941176, 0.2235294117647059, 0.31470588235294117, 0.8264705882352941, 0.17941176470588235, 0.14411764705882352, 0.13823529411764707, 0.15, 0.34705882352941175, 0.8058823529411765, 0.6676470588235294, 0.25882352941176473, 0.1323529411764706, 0.1323529411764706, 0.14705882352941177, 0.8764705882352941, 0.8823529411764706, 0.8647058823529412, 0.49411764705882355, 0.17352941176470588, 0.16176470588235295, 0.14705882352941177, 0.12941176470588237, 0.10294117647058823, 0.10588235294117647, 0.2647058823529412, 0.09411764705882353, 0.09117647058823529, 0.09117647058823529, 0.09411764705882353, 0.09117647058823529, 0.09117647058823529, 0.09411764705882353, 0.09117647058823529, 0.09117647058823529, 0.09117647058823529, 0.09117647058823529, 0.09117647058823529, 0.09117647058823529, 0.09117647058823529, 0.09117647058823529, 0.09117647058823529, 0.09411764705882353, 0.09411764705882353, 0.09117647058823529, 0.09117647058823529, 0.09411764705882353, 0.09705882352941177, 0.1, 0.11470588235294117, 0.1411764705882353], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/KilA-N.gap.json b/pfam_gap_rates/KilA-N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..309d3dd7a3135a26142f13b7cf14475aa3f7fa8c
--- /dev/null
+++ b/pfam_gap_rates/KilA-N.gap.json
@@ -0,0 +1 @@
+{"family": "KilA-N", "n_seqs": 1778, "length": 143, "gap_rates": [0.5438695163104612, 0.5140607424071991, 0.4482564679415073, 0.43363329583802024, 0.41901012373453317, 0.3830146231721035, 0.35714285714285715, 0.31046119235095615, 0.3323959505061867, 0.2761529808773903, 0.26940382452193473, 0.25984251968503935, 0.28065241844769406, 0.24184476940382452, 0.9341957255343082, 0.23565804274465693, 0.23509561304836896, 0.18616422947131608, 0.18616422947131608, 0.18616422947131608, 0.1580427446569179, 0.1580427446569179, 0.15748031496062992, 0.14173228346456693, 0.140607424071991, 0.13498312710911137, 0.1344206974128234, 0.1344206974128234, 0.9454443194600675, 0.44600674915635546, 0.31046119235095615, 0.2013498312710911, 0.19741282339707536, 0.19460067491563554, 0.12879640044994375, 0.12485939257592801, 0.1923509561304837, 0.12317210348706412, 0.1220472440944882, 0.11754780652418448, 0.11361079865016872, 0.11136107986501688, 0.11136107986501688, 0.1107986501687289, 0.11023622047244094, 0.10911136107986502, 0.0984251968503937, 0.09955005624296963, 0.09955005624296963, 0.09898762654668167, 0.0984251968503937, 0.09955005624296963, 0.09898762654668167, 0.10067491563554555, 0.1046119235095613, 0.10517435320584927, 0.14791901012373454, 0.16029246344206974, 0.18503937007874016, 0.2075365579302587, 0.4077615298087739, 0.6147356580427447, 0.44431946006749157, 0.6614173228346457, 0.6912260967379078, 0.7722159730033745, 0.8177727784026997, 0.8458942632170978, 0.8616422947131609, 0.8835770528683915, 0.9308211473565804, 0.8683914510686164, 0.8548931383577053, 0.8352080989876266, 0.8127109111361079, 0.7542182227221598, 0.6636670416197975, 0.6608548931383577, 0.5331833520809899, 0.41338582677165353, 0.610236220472441, 0.7452193475815523, 0.8166479190101237, 0.8250843644544432, 0.904949381327334, 0.9313835770528683, 0.9437570303712036, 0.9257592800899888, 0.8925759280089989, 0.8233970753655793, 0.7975253093363329, 0.703599550056243, 0.609111361079865, 0.4550056242969629, 0.3138357705286839, 0.2992125984251969, 0.20528683914510687, 0.20078740157480315, 0.17997750281214847, 0.16985376827896512, 0.1687289088863892, 0.16647919010123735, 0.16141732283464566, 0.15691788526434194, 0.12992125984251968, 0.11023622047244094, 0.09055118110236221, 0.06355455568053993, 0.06017997750281215, 0.05849268841394826, 0.06017997750281215, 0.04611923509561305, 0.048368953880764905, 0.05230596175478065, 0.05736782902137233, 0.05793025871766029, 0.05849268841394826, 0.06299212598425197, 0.06467941507311586, 0.06467941507311586, 0.06636670416197975, 0.06917885264341957, 0.0984251968503937, 0.11811023622047244, 0.12148481439820022, 0.12260967379077616, 0.12710911136107986, 0.13048368953880765, 0.1327334083239595, 0.13385826771653545, 0.1377952755905512, 0.1389201349831271, 0.14004499437570303, 0.14285714285714285, 0.14566929133858267, 0.1484814398200225, 0.1580427446569179, 0.16479190101237345, 0.17266591676040494, 0.18053993250843645, 0.19291338582677164, 0.30371203599550056, 0.532058492688414], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Ku_N.gap.json b/pfam_gap_rates/Ku_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..1ab6ef5d63613e164f0a8d7b395462d9ad49dd59
--- /dev/null
+++ b/pfam_gap_rates/Ku_N.gap.json
@@ -0,0 +1 @@
+{"family": "Ku_N", "n_seqs": 519, "length": 281, "gap_rates": [0.441233140655106, 0.23121387283236994, 0.1907514450867052, 0.17341040462427745, 0.17341040462427745, 0.16955684007707128, 0.16955684007707128, 0.16955684007707128, 0.1676300578034682, 0.1676300578034682, 0.16570327552986513, 0.1599229287090559, 0.15414258188824662, 0.15221579961464354, 0.15028901734104047, 0.13872832369942195, 0.1348747591522158, 0.12716763005780346, 0.12909441233140656, 0.12716763005780346, 0.1233140655105973, 0.6107899807321773, 0.674373795761079, 0.7475915221579962, 0.9267822736030829, 0.9421965317919075, 0.815028901734104, 0.7071290944123314, 0.6454720616570327, 0.3815028901734104, 0.2003853564547206, 0.15028901734104047, 0.1464354527938343, 0.14258188824662812, 0.13680154142581888, 0.11753371868978806, 0.10597302504816955, 0.06358381502890173, 0.06165703275529865, 0.06165703275529865, 0.06165703275529865, 0.05973025048169557, 0.057803468208092484, 0.057803468208092484, 0.05009633911368015, 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\ No newline at end of file
diff --git a/pfam_gap_rates/LEA_3.gap.json b/pfam_gap_rates/LEA_3.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..99ffc4b3b95deddefe8734b5582425cb9e415663
--- /dev/null
+++ b/pfam_gap_rates/LEA_3.gap.json
@@ -0,0 +1 @@
+{"family": "LEA_3", "n_seqs": 116, "length": 103, "gap_rates": [0.6637931034482759, 0.6293103448275862, 0.6293103448275862, 0.6293103448275862, 0.6293103448275862, 0.6206896551724138, 0.6293103448275862, 0.6206896551724138, 0.6206896551724138, 0.6206896551724138, 0.6379310344827587, 0.6120689655172413, 0.5948275862068966, 0.5431034482758621, 0.5086206896551724, 0.4827586206896552, 0.4827586206896552, 0.4482758620689655, 0.39655172413793105, 0.4051724137931034, 0.43103448275862066, 0.39655172413793105, 0.39655172413793105, 0.3620689655172414, 0.9224137931034483, 0.29310344827586204, 0.2672413793103448, 0.2672413793103448, 0.2672413793103448, 0.22413793103448276, 0.20689655172413793, 0.8793103448275862, 0.9310344827586207, 0.8448275862068966, 0.20689655172413793, 0.19827586206896552, 0.20689655172413793, 0.19827586206896552, 0.20689655172413793, 0.23275862068965517, 0.22413793103448276, 0.1896551724137931, 0.16379310344827586, 0.15517241379310345, 0.15517241379310345, 0.13793103448275862, 0.15517241379310345, 0.13793103448275862, 0.14655172413793102, 0.13793103448275862, 0.09482758620689655, 0.13793103448275862, 0.16379310344827586, 0.2413793103448276, 0.9224137931034483, 0.7413793103448276, 0.22413793103448276, 0.13793103448275862, 0.10344827586206896, 0.09482758620689655, 0.09482758620689655, 0.11206896551724138, 0.09482758620689655, 0.0603448275862069, 0.7068965517241379, 0.896551724137931, 0.8275862068965517, 0.6293103448275862, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.034482758620689655, 0.16379310344827586, 0.14655172413793102, 0.15517241379310345, 0.15517241379310345, 0.16379310344827586, 0.15517241379310345, 0.22413793103448276, 0.25862068965517243, 0.25862068965517243, 0.25862068965517243, 0.25862068965517243, 0.2672413793103448, 0.2672413793103448, 0.2672413793103448, 0.35344827586206895], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/LETM1.gap.json b/pfam_gap_rates/LETM1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..3dc36b56e75737648458ac40c7a9654ab9e915b8
--- /dev/null
+++ b/pfam_gap_rates/LETM1.gap.json
@@ -0,0 +1 @@
+{"family": "LETM1", "n_seqs": 767, "length": 284, "gap_rates": [0.8761408083441982, 0.5319426336375489, 0.4067796610169492, 0.3650586701434159, 0.33116036505867014, 0.32073011734028684, 0.3116036505867014, 0.3089960886571056, 0.2985658409387223, 0.2920469361147327, 0.28552803129074317, 0.2777053455019557, 0.27509778357235987, 0.26988265971316816, 0.2685788787483703, 0.2633637548891786, 0.25945241199478486, 0.25554106910039115, 0.2503259452411995, 0.24641460234680573, 0.24511082138200782, 0.242503259452412, 0.23989569752281617, 0.23859191655801826, 0.23859191655801826, 0.23859191655801826, 0.23728813559322035, 0.23728813559322035, 0.23728813559322035, 0.23728813559322035, 0.23859191655801826, 0.23989569752281617, 0.23598435462842243, 0.242503259452412, 0.22685788787483702, 0.8904823989569752, 0.22164276401564537, 0.22294654498044328, 0.2151238591916558, 0.8970013037809648, 0.9217731421121251, 0.8748370273794003, 0.20860495436766624, 0.20730117340286833, 0.20990873533246415, 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\ No newline at end of file
diff --git a/pfam_gap_rates/LIN37.gap.json b/pfam_gap_rates/LIN37.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..0d2ae97e95541d04da05aa3bb838bf7ebbc26e7d
--- /dev/null
+++ b/pfam_gap_rates/LIN37.gap.json
@@ -0,0 +1 @@
+{"family": "LIN37", "n_seqs": 107, "length": 172, "gap_rates": [0.9252336448598131, 0.8130841121495327, 0.6542056074766355, 0.5700934579439252, 0.3644859813084112, 0.2897196261682243, 0.29906542056074764, 0.24299065420560748, 0.2336448598130841, 0.205607476635514, 0.18691588785046728, 0.18691588785046728, 0.16822429906542055, 0.1588785046728972, 0.14953271028037382, 0.14018691588785046, 0.14018691588785046, 0.14018691588785046, 0.14018691588785046, 0.12149532710280374, 0.17757009345794392, 0.17757009345794392, 0.17757009345794392, 0.09345794392523364, 0.102803738317757, 0.102803738317757, 0.09345794392523364, 0.07476635514018691, 0.14953271028037382, 0.08411214953271028, 0.08411214953271028, 0.06542056074766354, 0.06542056074766354, 0.06542056074766354, 0.06542056074766354, 0.06542056074766354, 0.06542056074766354, 0.06542056074766354, 0.056074766355140186, 0.056074766355140186, 0.056074766355140186, 0.14018691588785046, 0.14018691588785046, 0.14018691588785046, 0.897196261682243, 0.9345794392523364, 0.9158878504672897, 0.8785046728971962, 0.6542056074766355, 0.4953271028037383, 0.4766355140186916, 0.205607476635514, 0.1308411214953271, 0.11214953271028037, 0.08411214953271028, 0.08411214953271028, 0.1308411214953271, 0.11214953271028037, 0.22429906542056074, 0.2336448598130841, 0.2897196261682243, 0.308411214953271, 0.2803738317757009, 0.2523364485981308, 0.27102803738317754, 0.2897196261682243, 0.29906542056074764, 0.2616822429906542, 0.2336448598130841, 0.22429906542056074, 0.2336448598130841, 0.2897196261682243, 0.35514018691588783, 0.7289719626168224, 0.9439252336448598, 0.8785046728971962, 0.7009345794392523, 0.5981308411214953, 0.5794392523364486, 0.411214953271028, 0.35514018691588783, 0.27102803738317754, 0.18691588785046728, 0.12149532710280374, 0.102803738317757, 0.897196261682243, 0.06542056074766354, 0.056074766355140186, 0.04672897196261682, 0.04672897196261682, 0.04672897196261682, 0.04672897196261682, 0.04672897196261682, 0.04672897196261682, 0.04672897196261682, 0.08411214953271028, 0.1308411214953271, 0.11214953271028037, 0.5420560747663551, 0.6822429906542056, 0.7663551401869159, 0.8785046728971962, 0.8691588785046729, 0.7570093457943925, 0.5700934579439252, 0.4392523364485981, 0.2616822429906542, 0.16822429906542055, 0.056074766355140186, 0.056074766355140186, 0.06542056074766354, 0.06542056074766354, 0.07476635514018691, 0.06542056074766354, 0.056074766355140186, 0.2336448598130841, 0.514018691588785, 0.4766355140186916, 0.45794392523364486, 0.21495327102803738, 0.056074766355140186, 0.056074766355140186, 0.056074766355140186, 0.056074766355140186, 0.06542056074766354, 0.11214953271028037, 0.102803738317757, 0.11214953271028037, 0.1308411214953271, 0.4392523364485981, 0.37383177570093457, 0.3644859813084112, 0.2616822429906542, 0.2616822429906542, 0.06542056074766354, 0.06542056074766354, 0.06542056074766354, 0.06542056074766354, 0.06542056074766354, 0.06542056074766354, 0.06542056074766354, 0.06542056074766354, 0.06542056074766354, 0.06542056074766354, 0.06542056074766354, 0.06542056074766354, 0.06542056074766354, 0.06542056074766354, 0.06542056074766354, 0.06542056074766354, 0.06542056074766354, 0.06542056074766354, 0.06542056074766354, 0.06542056074766354, 0.06542056074766354, 0.08411214953271028, 0.08411214953271028, 0.08411214953271028, 0.08411214953271028, 0.08411214953271028, 0.08411214953271028, 0.09345794392523364, 0.09345794392523364, 0.09345794392523364, 0.09345794392523364, 0.09345794392523364, 0.102803738317757, 0.11214953271028037, 0.12149532710280374, 0.1308411214953271, 0.14018691588785046, 0.7009345794392523], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/LRR_8.gap.json b/pfam_gap_rates/LRR_8.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..aae879d0f6478e60ae8078f148a3b342df43c12f
--- /dev/null
+++ b/pfam_gap_rates/LRR_8.gap.json
@@ -0,0 +1 @@
+{"family": "LRR_8", "n_seqs": 5000, "length": 61, "gap_rates": [0.7944, 0.3664, 0.2158, 0.1682, 0.1268, 0.0902, 0.082, 0.073, 0.0674, 0.0606, 0.0556, 0.0534, 0.0498, 0.048, 0.0424, 0.0372, 0.0364, 0.0362, 0.0302, 0.025, 0.0178, 0.0156, 0.203, 0.0242, 0.004, 0.001, 0.0012, 0.0004, 0.0002, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0004, 0.0, 0.0002, 0.001, 0.0022, 0.211, 0.0512, 0.0298, 0.0132, 0.012, 0.0148, 0.0188, 0.0228, 0.0476, 0.031, 0.032, 0.0344, 0.0374, 0.0392, 0.043, 0.0478, 0.0532, 0.066, 0.0828, 0.1466, 0.2468], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/LVIVD.gap.json b/pfam_gap_rates/LVIVD.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..8121c1568ce4e46e53d52a7bc8031f613d7defba
--- /dev/null
+++ b/pfam_gap_rates/LVIVD.gap.json
@@ -0,0 +1 @@
+{"family": "LVIVD", "n_seqs": 1800, "length": 42, "gap_rates": [0.9244444444444444, 0.7888888888888889, 0.7077777777777777, 0.5716666666666667, 0.4938888888888889, 0.39222222222222225, 0.335, 0.3088888888888889, 0.275, 0.255, 0.2238888888888889, 0.1938888888888889, 0.16444444444444445, 0.1338888888888889, 0.13, 0.13, 0.11055555555555556, 0.21055555555555555, 0.10722222222222222, 0.12555555555555556, 0.051666666666666666, 0.03666666666666667, 0.03222222222222222, 0.028888888888888888, 0.020555555555555556, 0.026111111111111113, 0.04, 0.050555555555555555, 0.06888888888888889, 0.07555555555555556, 0.08611111111111111, 0.10777777777777778, 0.11555555555555555, 0.12333333333333334, 0.15777777777777777, 0.22611111111111112, 0.2627777777777778, 0.3333333333333333, 0.425, 0.5372222222222223, 0.7066666666666667, 0.8127777777777778], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/La.gap.json b/pfam_gap_rates/La.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e9706065061dfe77cff7432999c245d415249306
--- /dev/null
+++ b/pfam_gap_rates/La.gap.json
@@ -0,0 +1 @@
+{"family": "La", "n_seqs": 1125, "length": 61, "gap_rates": [0.31733333333333336, 0.11022222222222222, 0.04888888888888889, 0.03822222222222222, 0.022222222222222223, 0.011555555555555555, 0.008888888888888889, 0.0071111111111111115, 0.0044444444444444444, 0.0035555555555555557, 0.0026666666666666666, 0.0017777777777777779, 0.0008888888888888889, 0.0008888888888888889, 0.0008888888888888889, 0.0017777777777777779, 0.0017777777777777779, 0.0017777777777777779, 0.0008888888888888889, 0.0008888888888888889, 0.0008888888888888889, 0.0008888888888888889, 0.0008888888888888889, 0.0, 0.0, 0.0, 0.47733333333333333, 0.544, 0.024888888888888887, 0.013333333333333334, 0.0035555555555555557, 0.0017777777777777779, 0.0017777777777777779, 0.0017777777777777779, 0.0017777777777777779, 0.0017777777777777779, 0.0017777777777777779, 0.0017777777777777779, 0.0017777777777777779, 0.0017777777777777779, 0.0017777777777777779, 0.0044444444444444444, 0.0071111111111111115, 0.010666666666666666, 0.012444444444444444, 0.022222222222222223, 0.03911111111111111, 0.14133333333333334, 0.9475555555555556, 0.9128888888888889, 0.06311111111111112, 0.06933333333333333, 0.072, 0.07288888888888889, 0.07466666666666667, 0.08266666666666667, 0.09155555555555556, 0.10044444444444445, 0.12711111111111112, 0.24, 0.8924444444444445], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Laminin_N.gap.json b/pfam_gap_rates/Laminin_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..4043520b9104004ecafa1732ff2ae6c7b44db8a8
--- /dev/null
+++ b/pfam_gap_rates/Laminin_N.gap.json
@@ -0,0 +1 @@
+{"family": "Laminin_N", "n_seqs": 680, "length": 297, "gap_rates": [0.5, 0.31176470588235294, 0.3014705882352941, 0.2985294117647059, 0.2926470588235294, 0.2897058823529412, 0.2867647058823529, 0.2838235294117647, 0.2823529411764706, 0.27941176470588236, 0.27647058823529413, 0.2691176470588235, 0.2691176470588235, 0.8161764705882353, 0.8161764705882353, 0.2661764705882353, 0.26323529411764707, 0.25882352941176473, 0.25441176470588234, 0.25441176470588234, 0.25441176470588234, 0.2529411764705882, 0.2529411764705882, 0.4176470588235294, 0.27058823529411763, 0.2691176470588235, 0.9205882352941176, 0.95, 0.9073529411764706, 0.26176470588235295, 0.2514705882352941, 0.24705882352941178, 0.24558823529411763, 0.24411764705882352, 0.2426470588235294, 0.24411764705882352, 0.24558823529411763, 0.2426470588235294, 0.2485294117647059, 0.3044117647058823, 0.35441176470588237, 0.7323529411764705, 0.8176470588235294, 0.8779411764705882, 0.8911764705882353, 0.9441176470588235, 0.9470588235294117, 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\ No newline at end of file
diff --git a/pfam_gap_rates/Ldh_1_C.gap.json b/pfam_gap_rates/Ldh_1_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f01b7931ef0201ba2db0a31fdc51d4879bc97138
--- /dev/null
+++ b/pfam_gap_rates/Ldh_1_C.gap.json
@@ -0,0 +1 @@
+{"family": "Ldh_1_C", "n_seqs": 3529, "length": 185, "gap_rates": [0.3692264097478039, 0.12411448002266931, 0.046472088410314534, 0.04363842448285633, 0.04165485973363559, 0.04023802776990649, 0.039954661377160666, 0.0376877302351941, 0.037971096627939925, 0.0376877302351941, 0.03655426466421082, 0.03542079909322755, 0.03400396712949844, 0.03400396712949844, 0.035137432700481724, 0.036270898271465006, 0.03542079909322755, 0.03400396712949844, 0.754037971096628, 0.03287050155851516, 0.03315386795126098, 0.0320204023802777, 0.03145366959478606, 0.028903372060073675, 0.027769906489090394, 0.027769906489090394, 0.027203173703598753, 0.026919807310852934, 0.02606970813261547, 0.02606970813261547, 0.02493624256163219, 0.025786341739869652, 0.02550297534712383, 0.02550297534712383, 0.2913006517427033, 0.2969679795976197, 0.3219042221592519, 0.353357891754038, 0.4392179087560215, 0.4375177103995466, 0.3372060073675262, 0.306035704165486, 0.2941343156701615, 0.2910172853499575, 0.026636440918107112, 0.0501558515160102, 0.06432417115330122, 0.047322187588552, 0.047322187588552, 0.05100595069424766, 0.275998866534429, 0.2425616321904222, 0.17058656843298384, 0.15925191272315103, 0.1379994332672145, 0.13176537262680646, 0.24057806744120147, 0.060357041654859736, 0.04165485973363559, 0.03258713516576934, 0.035987531878719184, 0.8982714650042505, 0.03655426466421082, 0.03287050155851516, 0.029753471238311135, 0.028053272881836216, 0.025786341739869652, 0.02493624256163219, 0.02408614338339473, 0.02436950977614055, 0.02493624256163219, 0.02465287616888637, 0.02436950977614055, 0.02351941059790309, 0.02295267781241145, 0.023236044205157267, 0.023802776990648908, 0.02465287616888637, 0.02521960895437801, 0.026636440918107112, 0.02606970813261547, 0.02550297534712383, 0.026919807310852934, 0.026919807310852934, 0.39897988098611503, 0.7418532162085577, 0.6256729951827713, 0.028903372060073675, 0.028053272881836216, 0.029470104845565316, 0.027203173703598753, 0.023802776990648908, 0.023236044205157267, 0.020402380277699066, 0.020685746670444885, 0.020685746670444885, 0.019835647492207426, 0.019835647492207426, 0.019835647492207426, 0.020685746670444885, 0.020402380277699066, 0.019835647492207426, 0.018985548313969963, 0.019835647492207426, 0.019835647492207426, 0.020402380277699066, 0.020119013884953244, 0.020402380277699066, 0.019835647492207426, 0.824879569283083, 0.7642391612354775, 0.020685746670444885, 0.02408614338339473, 0.02295267781241145, 0.22244261830546896, 0.2130915273448569, 0.042788325304618874, 0.028620005667327857, 0.029753471238311135, 0.028903372060073675, 0.07565882686313403, 0.06177387361858883, 0.05553981297818079, 0.05100595069424766, 0.92745820345707, 0.03853782941343157, 0.034287333522244265, 0.04080476055539813, 0.03967129498441485, 0.043071691697364696, 0.4834230660243695, 0.9328421649192405, 0.9353924624539529, 0.9073391895721168, 0.7676395579484273, 0.7563049022385945, 0.030603570416548598, 0.028903372060073675, 0.027486540096344575, 0.027203173703598753, 0.026919807310852934, 0.027203173703598753, 0.026919807310852934, 0.026636440918107112, 0.02606970813261547, 0.026636440918107112, 0.200340039671295, 0.028620005667327857, 0.028903372060073675, 0.029753471238311135, 0.030036837631056957, 0.03230376877302352, 0.03145366959478606, 0.03542079909322755, 0.03372060073675262, 0.5755171436667611, 0.04703882119580618, 0.03655426466421082, 0.037120997449702466, 0.03655426466421082, 0.03655426466421082, 0.037120997449702466, 0.037120997449702466, 0.037971096627939925, 0.03825446302068575, 0.03825446302068575, 0.03910456219892321, 0.03938792859166903, 0.04052139416265231, 0.041938226126381414, 0.043071691697364696, 0.04618872201756872, 0.0487390195522811, 0.05582317937092661, 0.06914139982998016, 0.11192972513459903, 0.17738736185888354, 0.21960895437801076, 0.283933125531312, 0.39501275148767356, 0.5151601020119014, 0.6049872485123264, 0.6863134032303769, 0.7920090677245679, 0.9172570133182204], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Ldh_1_N.gap.json b/pfam_gap_rates/Ldh_1_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c374b6cc7fbfca1ea6496e950bcd48979d0f9a8b
--- /dev/null
+++ b/pfam_gap_rates/Ldh_1_N.gap.json
@@ -0,0 +1 @@
+{"family": "Ldh_1_N", "n_seqs": 3593, "length": 155, "gap_rates": [0.7467297522961314, 0.11466740885054272, 0.0729195658224325, 0.06345672140272753, 0.06095185082104091, 0.05956025605343724, 0.0584469802393543, 0.05816866128583357, 0.57194544948511, 0.055663790704146954, 0.05315892012246034, 0.05260228221541887, 0.05176732535485667, 0.0512106874478152, 0.048149178959087116, 0.04759254105204565, 0.04759254105204565, 0.047314222098524907, 0.046479265237962704, 0.045922627330921235, 0.04536598942387977, 0.046479265237962704, 0.045922627330921235, 0.7742833286946841, 0.04258279988867242, 0.04202616198163095, 0.041747843028110215, 0.04119120512106875, 0.18452546618424714, 0.7929306985805733, 0.8018369050932368, 0.7934873364876148, 0.7926523796270526, 0.03701642081825773, 0.036738101864736986, 0.03645978291121625, 0.03590314500417478, 0.03618146395769552, 0.03645978291121625, 0.03618146395769552, 0.20762593932646814, 0.2218202059560256, 0.7406067353186752, 0.7369885889229056, 0.036738101864736986, 0.03562482605065405, 0.03506818814361258, 0.03451155023657111, 0.03451155023657111, 0.03339827442248817, 0.03145004174784303, 0.03145004174784303, 0.03145004174784303, 0.03172836070136376, 0.0320066796548845, 0.03228499860840523, 0.033119955468967434, 0.033119955468967434, 0.03228499860840523, 0.03339827442248817, 0.17339270804341775, 0.04675758419148344, 0.042304480935151684, 0.03868633453938213, 0.039521291399944335, 0.03785137767881993, 0.03367659337600891, 0.03395491232952964, 0.8842193153353743, 0.6153632062343446, 0.0320066796548845, 0.0320066796548845, 0.030615084887280822, 0.030336765933760088, 0.02922349011967715, 0.028945171166156414, 0.03089340384080156, 0.030615084887280822, 0.028388533259114945, 0.028388533259114945, 0.02866685221263568, 0.02866685221263568, 0.02866685221263568, 0.028945171166156414, 0.029501809073197886, 0.031171722794322294, 0.031171722794322294, 0.030058446980239354, 0.032563317561925965, 0.03228499860840523, 0.03228499860840523, 0.033119955468967434, 0.034789869190091846, 0.026718619537990537, 0.027275257445032005, 0.026718619537990537, 0.026440300584469802, 0.026718619537990537, 0.026718619537990537, 0.026161981630949068, 0.0256053437239076, 0.023657111049262453, 0.023657111049262453, 0.02393543000278319, 0.024770386863345394, 0.025048705816866128, 0.024770386863345394, 0.024213748956303925, 0.024213748956303925, 0.024770386863345394, 0.025048705816866128, 0.024770386863345394, 0.024770386863345394, 0.024770386863345394, 0.024213748956303925, 0.025883662677428334, 0.028388533259114945, 0.027275257445032005, 0.7823545783467855, 0.026440300584469802, 0.025327024770386862, 0.0256053437239076, 0.0256053437239076, 0.025883662677428334, 0.025883662677428334, 0.026161981630949068, 0.026718619537990537, 0.02699693849151127, 0.027275257445032005, 0.027275257445032005, 0.02922349011967715, 0.02922349011967715, 0.7934873364876148, 0.7937656554411355, 0.7934873364876148, 0.7926523796270526, 0.030615084887280822, 0.030615084887280822, 0.03145004174784303, 0.03172836070136376, 0.0320066796548845, 0.03172836070136376, 0.033119955468967434, 0.03451155023657111, 0.0392429724464236, 0.04258279988867242, 0.04508767047035903, 0.07069301419426663, 0.09073197884775953, 0.10520456443083774, 0.11661564152518787, 0.12997495129418313, 0.14695240745894794, 0.1722794322293348, 0.2913999443362093], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/LeuA_dimer.gap.json b/pfam_gap_rates/LeuA_dimer.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..cd4de593218fbf376bd2bea4b45cdcfe0a083956
--- /dev/null
+++ b/pfam_gap_rates/LeuA_dimer.gap.json
@@ -0,0 +1 @@
+{"family": "LeuA_dimer", "n_seqs": 2502, "length": 161, "gap_rates": [0.5303756994404476, 0.20743405275779375, 0.11750599520383694, 0.07354116706634692, 0.05555555555555555, 0.04636290967226219, 0.042366107114308556, 0.04036770583533174, 0.03996802557953637, 0.037569944044764186, 0.03557154276578737, 0.035171862509992005, 0.03437250199840128, 0.03477218225419664, 0.03357314148681055, 0.06155075939248601, 0.03836930455635491, 0.873701039168665, 0.925259792166267, 0.9028776978417267, 0.8653077537969625, 0.04156674660271783, 0.03237410071942446, 0.7557953637090328, 0.026778577138289367, 0.025579536370903277, 0.025579536370903277, 0.024380495603517186, 0.024380495603517186, 0.024380495603517186, 0.023181454836131096, 0.023980815347721823, 0.02358113509192646, 0.024380495603517186, 0.027977617905675458, 0.023181454836131096, 0.026378896882494004, 0.027577937649880094, 0.03796962430055955, 0.7074340527577938, 0.7422062350119905, 0.8840927258193445, 0.9056754596322941, 0.8928856914468425, 0.8397282174260592, 0.7230215827338129, 0.6830535571542766, 0.11910471622701839, 0.04636290967226219, 0.02597921662669864, 0.017985611510791366, 0.017985611510791366, 0.015587529976019185, 0.013589128697042365, 0.013589128697042365, 0.013189448441247002, 0.01718625099920064, 0.01838529176658673, 0.6794564348521183, 0.8577138289368506, 0.01838529176658673, 0.01598721023181455, 0.013988808952837729, 0.008393285371702638, 0.019984012789768184, 0.006794564348521183, 0.005995203836930456, 0.005995203836930456, 0.005995203836930456, 0.005595523581135092, 0.005595523581135092, 0.006394884092725819, 0.005995203836930456, 0.005195843325339729, 0.005195843325339729, 0.005195843325339729, 0.005595523581135092, 0.005595523581135092, 0.005595523581135092, 0.004796163069544364, 0.004396482813749001, 0.003996802557953637, 0.003996802557953637, 0.003996802557953637, 0.14308553157474022, 0.023181454836131096, 0.02358113509192646, 0.023181454836131096, 0.7150279776179057, 0.7525979216626698, 0.762589928057554, 0.7613908872901679, 0.740607513988809, 0.6842525979216627, 0.003996802557953637, 0.0035971223021582736, 0.0035971223021582736, 0.0035971223021582736, 0.0035971223021582736, 0.0035971223021582736, 0.0035971223021582736, 0.0035971223021582736, 0.0035971223021582736, 0.0031974420463629096, 0.002797761790567546, 0.0031974420463629096, 0.004396482813749001, 0.003996802557953637, 0.0031974420463629096, 0.9476418864908074, 0.008393285371702638, 0.007194244604316547, 0.006794564348521183, 0.007194244604316547, 0.005995203836930456, 0.005595523581135092, 0.005995203836930456, 0.005995203836930456, 0.005995203836930456, 0.006394884092725819, 0.006394884092725819, 0.006394884092725819, 0.41766586730615507, 0.9436450839328537, 0.9104716227018386, 0.019984012789768184, 0.027977617905675458, 0.9092725819344525, 0.03437250199840128, 0.02877697841726619, 0.06754596322941647, 0.920863309352518, 0.9488409272581935, 0.9380495603517186, 0.7869704236610712, 0.007593924860111911, 0.007593924860111911, 0.007593924860111911, 0.007593924860111911, 0.007993605115907274, 0.008393285371702638, 0.008393285371702638, 0.008393285371702638, 0.008393285371702638, 0.008393285371702638, 0.008393285371702638, 0.008393285371702638, 0.008792965627498001, 0.009192645883293365, 0.009992006394884092, 0.01079136690647482, 0.01079136690647482, 0.01079136690647482, 0.01079136690647482, 0.011191047162270184, 0.011191047162270184, 0.021183053557154278, 0.059552358113509195, 0.10751398880895284, 0.28497202238209435, 0.8876898481215028], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/LigD_N.gap.json b/pfam_gap_rates/LigD_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..fa37da9d1a5484978bdb538dc994f9f9fc816095
--- /dev/null
+++ b/pfam_gap_rates/LigD_N.gap.json
@@ -0,0 +1 @@
+{"family": "LigD_N", "n_seqs": 450, "length": 142, "gap_rates": [0.04666666666666667, 0.03333333333333333, 0.03111111111111111, 0.024444444444444446, 0.024444444444444446, 0.024444444444444446, 0.024444444444444446, 0.9111111111111111, 0.9111111111111111, 0.022222222222222223, 0.022222222222222223, 0.022222222222222223, 0.022222222222222223, 0.022222222222222223, 0.022222222222222223, 0.02, 0.02, 0.02, 0.017777777777777778, 0.017777777777777778, 0.017777777777777778, 0.013333333333333334, 0.013333333333333334, 0.9133333333333333, 0.013333333333333334, 0.013333333333333334, 0.013333333333333334, 0.013333333333333334, 0.013333333333333334, 0.013333333333333334, 0.015555555555555555, 0.015555555555555555, 0.015555555555555555, 0.015555555555555555, 0.015555555555555555, 0.024444444444444446, 0.02, 0.02, 0.02, 0.02, 0.017777777777777778, 0.9244444444444444, 0.9244444444444444, 0.92, 0.017777777777777778, 0.017777777777777778, 0.017777777777777778, 0.017777777777777778, 0.017777777777777778, 0.017777777777777778, 0.017777777777777778, 0.02, 0.02, 0.02, 0.09555555555555556, 0.09777777777777778, 0.09333333333333334, 0.09333333333333334, 0.03333333333333333, 0.028888888888888888, 0.028888888888888888, 0.035555555555555556, 0.03777777777777778, 0.03333333333333333, 0.03333333333333333, 0.04888888888888889, 0.04888888888888889, 0.044444444444444446, 0.044444444444444446, 0.03111111111111111, 0.03333333333333333, 0.02666666666666667, 0.024444444444444446, 0.022222222222222223, 0.022222222222222223, 0.022222222222222223, 0.022222222222222223, 0.022222222222222223, 0.022222222222222223, 0.022222222222222223, 0.022222222222222223, 0.022222222222222223, 0.6266666666666667, 0.7333333333333333, 0.7555555555555555, 0.8022222222222222, 0.8666666666666667, 0.9088888888888889, 0.9088888888888889, 0.9133333333333333, 0.9155555555555556, 0.92, 0.92, 0.9222222222222223, 0.9222222222222223, 0.9288888888888889, 0.94, 0.9444444444444444, 0.9333333333333333, 0.9266666666666666, 0.9222222222222223, 0.92, 0.92, 0.92, 0.9133333333333333, 0.9133333333333333, 0.9088888888888889, 0.9022222222222223, 0.8355555555555556, 0.7622222222222222, 0.74, 0.7111111111111111, 0.5666666666666667, 0.2777777777777778, 0.28, 0.27555555555555555, 0.26666666666666666, 0.26, 0.035555555555555556, 0.03333333333333333, 0.03333333333333333, 0.03111111111111111, 0.03111111111111111, 0.035555555555555556, 0.04, 0.04, 0.042222222222222223, 0.044444444444444446, 0.044444444444444446, 0.044444444444444446, 0.044444444444444446, 0.04888888888888889, 0.06444444444444444, 0.10222222222222223, 0.11777777777777777, 0.12, 0.12, 0.12222222222222222, 0.12666666666666668, 0.1288888888888889, 0.13333333333333333, 0.42444444444444446], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Linker_histone.gap.json b/pfam_gap_rates/Linker_histone.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b6736180762d7a429080622f61ab13d959f13673
--- /dev/null
+++ b/pfam_gap_rates/Linker_histone.gap.json
@@ -0,0 +1 @@
+{"family": "Linker_histone", "n_seqs": 1253, "length": 79, "gap_rates": [0.5019952114924182, 0.28890662410215484, 0.20909816440542697, 0.17956903431763768, 0.11652035115722266, 0.1077414205905826, 0.06384676775738228, 0.05426975259377494, 0.05107741420590583, 0.04868316041500399, 0.03910614525139665, 0.035115722266560255, 0.034317637669592976, 0.03192338387869114, 0.03192338387869114, 0.028731045490822026, 0.030327214684756583, 0.9441340782122905, 0.9297685554668795, 0.029529130087789304, 0.02713487629688747, 0.025538707102952914, 0.023942537909018357, 0.02314445331205108, 0.02154828411811652, 0.020750199521149242, 0.020750199521149242, 0.019952114924181964, 0.018355945730247406, 0.01675977653631285, 0.017557861133280128, 0.018355945730247406, 0.019154030327214685, 0.019154030327214685, 0.019952114924181964, 0.019154030327214685, 0.020750199521149242, 0.18675179569034317, 0.5945730247406225, 0.936951316839585, 0.7916999201915403, 0.13567438148443736, 0.05826017557861133, 0.052673583399840386, 0.040702314445331206, 0.03990422984836393, 0.931364724660814, 0.028731045490822026, 0.02314445331205108, 0.02314445331205108, 0.023942537909018357, 0.02713487629688747, 0.02713487629688747, 0.028731045490822026, 0.03272146847565842, 0.03192338387869114, 0.029529130087789304, 0.0335195530726257, 0.0335195530726257, 0.034317637669592976, 0.035913806863527534, 0.03671189146049481, 0.03910614525139665, 0.04229848363926576, 0.04389465283320032, 0.05746209098164405, 0.08619313647246608, 0.11811652035115722, 0.5091779728651237, 0.5626496408619314, 0.43415802075019955, 0.4405426975259378, 0.441340782122905, 0.3016759776536313, 0.3016759776536313, 0.31045490822027133, 0.3272146847565842, 0.3503591380686353, 0.6943335993615323], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Lipid_DES.gap.json b/pfam_gap_rates/Lipid_DES.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c1460c1120e6c490a6bd120104ccfd47a970a6be
--- /dev/null
+++ b/pfam_gap_rates/Lipid_DES.gap.json
@@ -0,0 +1 @@
+{"family": "Lipid_DES", "n_seqs": 361, "length": 37, "gap_rates": [0.8310249307479224, 0.47645429362880887, 0.22714681440443213, 0.15512465373961218, 0.12465373961218837, 0.09418282548476455, 0.0886426592797784, 0.07756232686980609, 0.07202216066481995, 0.060941828254847646, 0.04155124653739612, 0.027700831024930747, 0.024930747922437674, 0.024930747922437674, 0.024930747922437674, 0.024930747922437674, 0.0221606648199446, 0.0221606648199446, 0.01662049861495845, 0.019390581717451522, 0.0110803324099723, 0.008310249307479225, 0.002770083102493075, 0.0110803324099723, 0.013850415512465374, 0.013850415512465374, 0.013850415512465374, 0.019390581717451522, 0.024930747922437674, 0.024930747922437674, 0.0221606648199446, 0.0332409972299169, 0.0332409972299169, 0.0332409972299169, 0.04986149584487535, 0.11911357340720222, 0.4626038781163435], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Lipin_N.gap.json b/pfam_gap_rates/Lipin_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d86bec022468e0c016aa1b8afbba52ac4ad1a448
--- /dev/null
+++ b/pfam_gap_rates/Lipin_N.gap.json
@@ -0,0 +1 @@
+{"family": "Lipin_N", "n_seqs": 421, "length": 112, "gap_rates": [0.3681710213776722, 0.3491686460807601, 0.33729216152019004, 0.30641330166270786, 0.29453681710213775, 0.26128266033254155, 0.22327790973871733, 0.7315914489311164, 0.7767220902612827, 0.7315914489311164, 0.7102137767220903, 0.19714964370546317, 0.1828978622327791, 0.166270783847981, 0.15676959619952494, 0.14489311163895488, 0.13539192399049882, 0.13539192399049882, 0.1377672209026128, 0.15676959619952494, 0.11401425178147269, 0.0997624703087886, 0.09501187648456057, 0.09501187648456057, 0.24465558194774348, 0.2327790973871734, 0.07838479809976247, 0.052256532066508314, 0.04513064133016627, 0.04275534441805225, 0.04275534441805225, 0.04275534441805225, 0.04275534441805225, 0.040380047505938245, 0.040380047505938245, 0.03800475059382423, 0.035629453681710214, 0.0498812351543943, 0.040380047505938245, 0.9406175771971497, 0.047505938242280284, 0.04275534441805225, 0.9382422802850356, 0.9239904988123515, 0.040380047505938245, 0.03800475059382423, 0.03800475059382423, 0.03800475059382423, 0.035629453681710214, 0.035629453681710214, 0.035629453681710214, 0.035629453681710214, 0.035629453681710214, 0.03800475059382423, 0.03800475059382423, 0.040380047505938245, 0.040380047505938245, 0.03800475059382423, 0.8432304038004751, 0.035629453681710214, 0.04513064133016627, 0.04275534441805225, 0.04513064133016627, 0.040380047505938245, 0.04275534441805225, 0.040380047505938245, 0.0332541567695962, 0.0332541567695962, 0.030878859857482184, 0.035629453681710214, 0.03800475059382423, 0.035629453681710214, 0.035629453681710214, 0.035629453681710214, 0.03800475059382423, 0.03800475059382423, 0.03800475059382423, 0.03800475059382423, 0.9121140142517815, 0.03800475059382423, 0.03800475059382423, 0.03800475059382423, 0.03800475059382423, 0.03800475059382423, 0.040380047505938245, 0.040380047505938245, 0.040380047505938245, 0.040380047505938245, 0.04275534441805225, 0.04275534441805225, 0.04275534441805225, 0.04513064133016627, 0.04513064133016627, 0.052256532066508314, 0.05938242280285035, 0.07600950118764846, 0.08076009501187649, 0.5320665083135392, 0.5463182897862233, 0.5154394299287411, 0.24465558194774348, 0.27790973871733965, 0.3087885985748218, 0.33966745843230406, 0.36342042755344417, 0.38954869358669836, 0.40617577197149646, 0.42042755344418054, 0.4251781472684085, 0.4346793349168646, 0.43705463182897863, 0.44418052256532065], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/LisH.gap.json b/pfam_gap_rates/LisH.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..6c4e4fbd0bdc73bd327c4a8a9a0bd51c4f221d00
--- /dev/null
+++ b/pfam_gap_rates/LisH.gap.json
@@ -0,0 +1 @@
+{"family": "LisH", "n_seqs": 1105, "length": 27, "gap_rates": [0.5049773755656108, 0.2171945701357466, 0.09773755656108597, 0.07692307692307693, 0.05339366515837104, 0.024434389140271493, 0.02081447963800905, 0.0027149321266968325, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0009049773755656109, 0.0009049773755656109, 0.0018099547511312218, 0.0018099547511312218, 0.0036199095022624436, 0.006334841628959276, 0.009954751131221719, 0.03257918552036199, 0.09411764705882353, 0.3067873303167421], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/LysR_substrate.gap.json b/pfam_gap_rates/LysR_substrate.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..8dafc495f2525dc71c14edecb9f420547a34ebb3
--- /dev/null
+++ b/pfam_gap_rates/LysR_substrate.gap.json
@@ -0,0 +1 @@
+{"family": "LysR_substrate", "n_seqs": 5000, "length": 223, "gap_rates": [0.7008, 0.4582, 0.2952, 0.213, 0.1574, 0.1154, 0.0888, 0.0842, 0.0766, 0.0756, 0.074, 0.0732, 0.0806, 0.0766, 0.1044, 0.0792, 0.0686, 0.0652, 0.06, 0.064, 0.057, 0.053, 0.0504, 0.0488, 0.0526, 0.0484, 0.0482, 0.0572, 0.0496, 0.0502, 0.0508, 0.049, 0.046, 0.0424, 0.0332, 0.0316, 0.0302, 0.0284, 0.0278, 0.0304, 0.0268, 0.0264, 0.3062, 0.2916, 0.032, 0.0268, 0.0264, 0.0254, 0.1082, 0.034, 0.03, 0.0246, 0.0236, 0.2156, 0.0242, 0.022, 0.0214, 0.0206, 0.0202, 0.02, 0.028, 0.0224, 0.0236, 0.026, 0.8152, 0.9216, 0.9384, 0.8882, 0.6872, 0.0268, 0.0248, 0.0216, 0.0218, 0.0584, 0.044, 0.0234, 0.0206, 0.0202, 0.02, 0.02, 0.0192, 0.0194, 0.019, 0.019, 0.0188, 0.0178, 0.0178, 0.022, 0.0194, 0.0194, 0.0188, 0.0848, 0.4026, 0.0996, 0.0752, 0.0602, 0.9222, 0.6704, 0.054, 0.0932, 0.0498, 0.047, 0.9244, 0.0932, 0.0776, 0.0712, 0.0664, 0.0624, 0.066, 0.0616, 0.0544, 0.023, 0.02, 0.019, 0.0196, 0.112, 0.088, 0.1254, 0.0672, 0.0406, 0.0332, 0.8586, 0.7788, 0.0288, 0.028, 0.0262, 0.0256, 0.0234, 0.0262, 0.0676, 0.0558, 0.0758, 0.0592, 0.0512, 0.0432, 0.934, 0.0326, 0.0328, 0.0546, 0.0438, 0.9062, 0.929, 0.8526, 0.0332, 0.0302, 0.0688, 0.0336, 0.027, 0.0256, 0.0242, 0.0228, 0.0222, 0.0216, 0.0222, 0.0212, 0.0214, 0.0214, 0.0214, 0.0218, 0.0216, 0.0216, 0.022, 0.0224, 0.0228, 0.0236, 0.0238, 0.0242, 0.0242, 0.0238, 0.0246, 0.025, 0.0258, 0.0802, 0.1622, 0.0524, 0.2014, 0.1734, 0.1342, 0.0486, 0.0798, 0.0642, 0.0372, 0.0362, 0.3332, 0.047, 0.038, 0.0366, 0.0366, 0.0378, 0.3246, 0.9148, 0.0584, 0.0482, 0.046, 0.6358, 0.0444, 0.045, 0.0454, 0.0462, 0.0486, 0.049, 0.0514, 0.0528, 0.0558, 0.058, 0.0692, 0.196, 0.0912, 0.084, 0.0844, 0.09, 0.0944, 0.0992, 0.102, 0.1066, 0.1138, 0.1264, 0.1436, 0.1656, 0.251, 0.3746, 0.5502, 0.7704], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Lysozyme_like.gap.json b/pfam_gap_rates/Lysozyme_like.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..3b38e5543cb4a0b74d13bd9dc5ae940a10cce989
--- /dev/null
+++ b/pfam_gap_rates/Lysozyme_like.gap.json
@@ -0,0 +1 @@
+{"family": "Lysozyme_like", "n_seqs": 140, "length": 176, "gap_rates": [0.7071428571428572, 0.29285714285714287, 0.12857142857142856, 0.05714285714285714, 0.05714285714285714, 0.05, 0.05, 0.05, 0.05, 0.05, 0.05, 0.05, 0.05, 0.05, 0.05, 0.04285714285714286, 0.04285714285714286, 0.04285714285714286, 0.04285714285714286, 0.04285714285714286, 0.04285714285714286, 0.04285714285714286, 0.04285714285714286, 0.04285714285714286, 0.04285714285714286, 0.04285714285714286, 0.04285714285714286, 0.04285714285714286, 0.04285714285714286, 0.04285714285714286, 0.03571428571428571, 0.03571428571428571, 0.02857142857142857, 0.02857142857142857, 0.02857142857142857, 0.02857142857142857, 0.02857142857142857, 0.02857142857142857, 0.02857142857142857, 0.02857142857142857, 0.02857142857142857, 0.02857142857142857, 0.02857142857142857, 0.02857142857142857, 0.02857142857142857, 0.02857142857142857, 0.02857142857142857, 0.02857142857142857, 0.02857142857142857, 0.02857142857142857, 0.03571428571428571, 0.03571428571428571, 0.05, 0.7714285714285715, 0.7857142857142857, 0.7857142857142857, 0.7857142857142857, 0.7714285714285715, 0.04285714285714286, 0.04285714285714286, 0.04285714285714286, 0.04285714285714286, 0.37142857142857144, 0.03571428571428571, 0.03571428571428571, 0.03571428571428571, 0.03571428571428571, 0.03571428571428571, 0.03571428571428571, 0.03571428571428571, 0.03571428571428571, 0.03571428571428571, 0.03571428571428571, 0.03571428571428571, 0.03571428571428571, 0.03571428571428571, 0.03571428571428571, 0.03571428571428571, 0.03571428571428571, 0.03571428571428571, 0.03571428571428571, 0.03571428571428571, 0.03571428571428571, 0.03571428571428571, 0.1357142857142857, 0.1357142857142857, 0.1357142857142857, 0.03571428571428571, 0.7214285714285714, 0.7357142857142858, 0.7285714285714285, 0.6357142857142857, 0.014285714285714285, 0.014285714285714285, 0.014285714285714285, 0.014285714285714285, 0.014285714285714285, 0.014285714285714285, 0.014285714285714285, 0.014285714285714285, 0.014285714285714285, 0.014285714285714285, 0.014285714285714285, 0.02857142857142857, 0.014285714285714285, 0.014285714285714285, 0.014285714285714285, 0.014285714285714285, 0.014285714285714285, 0.014285714285714285, 0.014285714285714285, 0.02142857142857143, 0.02142857142857143, 0.02142857142857143, 0.06428571428571428, 0.9428571428571428, 0.02142857142857143, 0.02142857142857143, 0.02142857142857143, 0.02142857142857143, 0.02142857142857143, 0.02142857142857143, 0.02142857142857143, 0.02142857142857143, 0.02142857142857143, 0.02142857142857143, 0.02142857142857143, 0.02142857142857143, 0.02142857142857143, 0.02142857142857143, 0.02857142857142857, 0.02857142857142857, 0.8, 0.8071428571428572, 0.8214285714285714, 0.8214285714285714, 0.8142857142857143, 0.8, 0.8, 0.32142857142857145, 0.2571428571428571, 0.2785714285714286, 0.2857142857142857, 0.29285714285714287, 0.30714285714285716, 0.3, 0.3, 0.3, 0.30714285714285716, 0.29285714285714287, 0.30714285714285716, 0.37142857142857144, 0.4142857142857143, 0.12142857142857143, 0.10714285714285714, 0.07857142857142857, 0.07857142857142857, 0.07142857142857142, 0.30714285714285716, 0.29285714285714287, 0.4928571428571429, 0.05714285714285714, 0.05714285714285714, 0.05714285714285714, 0.05714285714285714, 0.05714285714285714, 0.06428571428571428, 0.06428571428571428, 0.07142857142857142, 0.07142857142857142, 0.07857142857142857, 0.07857142857142857, 0.07857142857142857, 0.09285714285714286, 0.14285714285714285, 0.75], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/MAM33.gap.json b/pfam_gap_rates/MAM33.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..76f68f7b8166be8305b7b4cf098e7c34cd1702d4
--- /dev/null
+++ b/pfam_gap_rates/MAM33.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/MAP65_ASE1.gap.json b/pfam_gap_rates/MAP65_ASE1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..992a77fdf29beee75636afd54fed35e45525f211
--- /dev/null
+++ b/pfam_gap_rates/MAP65_ASE1.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/MASE3.gap.json b/pfam_gap_rates/MASE3.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..bfe1c9e2ccb0237bf62414b58434b2e2fd5ac7b1
--- /dev/null
+++ b/pfam_gap_rates/MASE3.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/MBDa.gap.json b/pfam_gap_rates/MBDa.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..763d1e445c7614a43493b9931b413888d3ceb3ad
--- /dev/null
+++ b/pfam_gap_rates/MBDa.gap.json
@@ -0,0 +1 @@
+{"family": "MBDa", "n_seqs": 106, "length": 80, "gap_rates": [0.6132075471698113, 0.5188679245283019, 0.5094339622641509, 0.4528301886792453, 0.3867924528301887, 0.33962264150943394, 0.32075471698113206, 0.2641509433962264, 0.2358490566037736, 0.2358490566037736, 0.2358490566037736, 0.22641509433962265, 0.7830188679245284, 0.2169811320754717, 0.2169811320754717, 0.19811320754716982, 0.11320754716981132, 0.12264150943396226, 0.0660377358490566, 0.05660377358490566, 0.04716981132075472, 0.04716981132075472, 0.04716981132075472, 0.04716981132075472, 0.04716981132075472, 0.04716981132075472, 0.04716981132075472, 0.03773584905660377, 0.03773584905660377, 0.03773584905660377, 0.03773584905660377, 0.03773584905660377, 0.03773584905660377, 0.03773584905660377, 0.03773584905660377, 0.03773584905660377, 0.03773584905660377, 0.03773584905660377, 0.03773584905660377, 0.03773584905660377, 0.03773584905660377, 0.8207547169811321, 0.8867924528301887, 0.8867924528301887, 0.9339622641509434, 0.8867924528301887, 0.8584905660377359, 0.8018867924528302, 0.24528301886792453, 0.03773584905660377, 0.03773584905660377, 0.03773584905660377, 0.03773584905660377, 0.0, 0.0, 0.0, 0.0, 0.41509433962264153, 0.9433962264150944, 0.018867924528301886, 0.0, 0.0, 0.0, 0.0, 0.009433962264150943, 0.009433962264150943, 0.009433962264150943, 0.009433962264150943, 0.08490566037735849, 0.09433962264150944, 0.09433962264150944, 0.09433962264150944, 0.09433962264150944, 0.09433962264150944, 0.10377358490566038, 0.10377358490566038, 0.10377358490566038, 0.12264150943396226, 0.12264150943396226, 0.2169811320754717], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/MCPsignal.gap.json b/pfam_gap_rates/MCPsignal.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..567e71fd44fc3d1e114030d9f50fc6c1fe49dcc4
--- /dev/null
+++ b/pfam_gap_rates/MCPsignal.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/MCRA.gap.json b/pfam_gap_rates/MCRA.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c0f1562af44ce5a787de0ba9b0641d6e7c975869
--- /dev/null
+++ b/pfam_gap_rates/MCRA.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/MGAT2.gap.json b/pfam_gap_rates/MGAT2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..8fed5b0c63512be8aeccbdfa1b24b62c9198c444
--- /dev/null
+++ b/pfam_gap_rates/MGAT2.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/MH2.gap.json b/pfam_gap_rates/MH2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..33acae365fbebb3b1fb0cde2941f4b7646bc1216
--- /dev/null
+++ b/pfam_gap_rates/MH2.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/MHC_I_C.gap.json b/pfam_gap_rates/MHC_I_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..036f7dddd75e59c0bf715a5e19abd7f3983859bb
--- /dev/null
+++ b/pfam_gap_rates/MHC_I_C.gap.json
@@ -0,0 +1 @@
+{"family": "MHC_I_C", "n_seqs": 111, "length": 28, "gap_rates": [0.13513513513513514, 0.09009009009009009, 0.06306306306306306, 0.06306306306306306, 0.0990990990990991, 0.036036036036036036, 0.036036036036036036, 0.036036036036036036, 0.036036036036036036, 0.036036036036036036, 0.036036036036036036, 0.02702702702702703, 0.0, 0.0, 0.0990990990990991, 0.0990990990990991, 0.0990990990990991, 0.009009009009009009, 0.0, 0.0, 0.0, 0.009009009009009009, 0.009009009009009009, 0.009009009009009009, 0.018018018018018018, 0.018018018018018018, 0.3963963963963964, 0.44144144144144143], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/MIF4G_like_2.gap.json b/pfam_gap_rates/MIF4G_like_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b7d10d525ff76ef65b3635831a8ad2a558d44e5e
--- /dev/null
+++ b/pfam_gap_rates/MIF4G_like_2.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/MKT1_N.gap.json b/pfam_gap_rates/MKT1_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..efcf1b08e27bf70fce43e99593b497fa3f446b73
--- /dev/null
+++ b/pfam_gap_rates/MKT1_N.gap.json
@@ -0,0 +1 @@
+{"family": "MKT1_N", "n_seqs": 152, "length": 95, "gap_rates": [0.39473684210526316, 0.15789473684210525, 0.06578947368421052, 0.05263157894736842, 0.039473684210526314, 0.02631578947368421, 0.02631578947368421, 0.019736842105263157, 0.019736842105263157, 0.019736842105263157, 0.013157894736842105, 0.013157894736842105, 0.013157894736842105, 0.013157894736842105, 0.013157894736842105, 0.013157894736842105, 0.013157894736842105, 0.013157894736842105, 0.013157894736842105, 0.013157894736842105, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.9407894736842105, 0.0, 0.0, 0.0, 0.0, 0.25, 0.25, 0.013157894736842105, 0.013157894736842105, 0.013157894736842105, 0.006578947368421052, 0.006578947368421052, 0.006578947368421052, 0.006578947368421052, 0.006578947368421052, 0.006578947368421052, 0.006578947368421052, 0.006578947368421052, 0.006578947368421052, 0.006578947368421052, 0.006578947368421052, 0.32894736842105265, 0.8355263157894737, 0.8486842105263158, 0.8355263157894737, 0.7697368421052632, 0.013157894736842105, 0.019736842105263157, 0.02631578947368421, 0.02631578947368421, 0.02631578947368421, 0.03289473684210526, 0.039473684210526314, 0.046052631578947366, 0.05263157894736842, 0.05263157894736842, 0.05263157894736842, 0.05263157894736842, 0.05263157894736842, 0.05263157894736842, 0.05921052631578947, 0.07236842105263158, 0.09210526315789473, 0.09868421052631579, 0.09868421052631579, 0.09868421052631579, 0.09868421052631579, 0.09868421052631579, 0.09868421052631579, 0.1118421052631579, 0.11842105263157894, 0.15789473684210525, 0.17763157894736842, 0.18421052631578946, 0.24342105263157895], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/MMR_HSR1_C.gap.json b/pfam_gap_rates/MMR_HSR1_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..eee4dce0974150814fac7641b37dd36326d47d48
--- /dev/null
+++ b/pfam_gap_rates/MMR_HSR1_C.gap.json
@@ -0,0 +1 @@
+{"family": "MMR_HSR1_C", "n_seqs": 229, "length": 125, "gap_rates": [0.12663755458515283, 0.043668122270742356, 0.026200873362445413, 0.026200873362445413, 0.021834061135371178, 0.021834061135371178, 0.021834061135371178, 0.8951965065502183, 0.1965065502183406, 0.03056768558951965, 0.021834061135371178, 0.021834061135371178, 0.021834061135371178, 0.021834061135371178, 0.021834061135371178, 0.017467248908296942, 0.017467248908296942, 0.017467248908296942, 0.013100436681222707, 0.017467248908296942, 0.017467248908296942, 0.05240174672489083, 0.0611353711790393, 0.2576419213973799, 0.2663755458515284, 0.27074235807860264, 0.9301310043668122, 0.6724890829694323, 0.021834061135371178, 0.017467248908296942, 0.013100436681222707, 0.008733624454148471, 0.008733624454148471, 0.008733624454148471, 0.008733624454148471, 0.008733624454148471, 0.008733624454148471, 0.008733624454148471, 0.008733624454148471, 0.008733624454148471, 0.008733624454148471, 0.013100436681222707, 0.013100436681222707, 0.008733624454148471, 0.008733624454148471, 0.008733624454148471, 0.008733624454148471, 0.008733624454148471, 0.008733624454148471, 0.008733624454148471, 0.013100436681222707, 0.013100436681222707, 0.013100436681222707, 0.017467248908296942, 0.021834061135371178, 0.013100436681222707, 0.008733624454148471, 0.004366812227074236, 0.004366812227074236, 0.004366812227074236, 0.004366812227074236, 0.004366812227074236, 0.0, 0.4672489082969432, 0.519650655021834, 0.6200873362445415, 0.6244541484716157, 0.6550218340611353, 0.9388646288209607, 0.6419213973799127, 0.6200873362445415, 0.5633187772925764, 0.4978165938864629, 0.4672489082969432, 0.4017467248908297, 0.4366812227074236, 0.27074235807860264, 0.2183406113537118, 0.021834061135371178, 0.008733624454148471, 0.008733624454148471, 0.008733624454148471, 0.008733624454148471, 0.008733624454148471, 0.008733624454148471, 0.008733624454148471, 0.008733624454148471, 0.013100436681222707, 0.013100436681222707, 0.013100436681222707, 0.013100436681222707, 0.013100436681222707, 0.26200873362445415, 0.013100436681222707, 0.03056768558951965, 0.013100436681222707, 0.017467248908296942, 0.013100436681222707, 0.008733624454148471, 0.008733624454148471, 0.008733624454148471, 0.008733624454148471, 0.008733624454148471, 0.008733624454148471, 0.008733624454148471, 0.008733624454148471, 0.008733624454148471, 0.008733624454148471, 0.008733624454148471, 0.008733624454148471, 0.008733624454148471, 0.5545851528384279, 0.008733624454148471, 0.008733624454148471, 0.008733624454148471, 0.008733624454148471, 0.008733624454148471, 0.008733624454148471, 0.008733624454148471, 0.008733624454148471, 0.008733624454148471, 0.008733624454148471, 0.07860262008733625, 0.10480349344978165, 0.22707423580786026], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/MMS19_N.gap.json b/pfam_gap_rates/MMS19_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f343c8d2ca6ed617827eaa16197f824eda9678be
--- /dev/null
+++ b/pfam_gap_rates/MMS19_N.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/MMU163.gap.json b/pfam_gap_rates/MMU163.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b2799ef2b28cf8859537c295ae170abeeecb1088
--- /dev/null
+++ b/pfam_gap_rates/MMU163.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/MORN_2.gap.json b/pfam_gap_rates/MORN_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..1fb8494bb6e2eb5e073001ec4ef7d038630e9e63
--- /dev/null
+++ b/pfam_gap_rates/MORN_2.gap.json
@@ -0,0 +1 @@
+{"family": "MORN_2", "n_seqs": 1996, "length": 22, "gap_rates": [0.49198396793587174, 0.19138276553106212, 0.09919839679358718, 0.0746492985971944, 0.034569138276553106, 0.010521042084168337, 0.003006012024048096, 0.001002004008016032, 0.0, 0.0, 0.0, 0.000501002004008016, 0.001002004008016032, 0.003006012024048096, 0.00751503006012024, 0.018537074148296594, 0.03557114228456914, 0.05661322645290581, 0.09719438877755511, 0.13026052104208416, 0.26452905811623245, 0.503006012024048], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/MRJP.gap.json b/pfam_gap_rates/MRJP.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a8d5989c47a02461d140485f30f877cabd15fa23
--- /dev/null
+++ b/pfam_gap_rates/MRJP.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/MRP_L53.gap.json b/pfam_gap_rates/MRP_L53.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..0fbc79922620bc23853da5e612739e1f5bc5a1b4
--- /dev/null
+++ b/pfam_gap_rates/MRP_L53.gap.json
@@ -0,0 +1 @@
+{"family": "MRP_L53", "n_seqs": 164, "length": 54, "gap_rates": [0.15853658536585366, 0.0975609756097561, 0.06707317073170732, 0.054878048780487805, 0.04878048780487805, 0.054878048780487805, 0.054878048780487805, 0.04878048780487805, 0.036585365853658534, 0.036585365853658534, 0.03048780487804878, 0.024390243902439025, 0.012195121951219513, 0.012195121951219513, 0.012195121951219513, 0.012195121951219513, 0.006097560975609756, 0.006097560975609756, 0.4146341463414634, 0.4024390243902439, 0.3902439024390244, 0.006097560975609756, 0.006097560975609756, 0.006097560975609756, 0.006097560975609756, 0.006097560975609756, 0.006097560975609756, 0.006097560975609756, 0.18292682926829268, 0.012195121951219513, 0.012195121951219513, 0.006097560975609756, 0.006097560975609756, 0.0, 0.0, 0.0, 0.0, 0.006097560975609756, 0.012195121951219513, 0.5487804878048781, 0.5426829268292683, 0.012195121951219513, 0.0, 0.0, 0.0, 0.006097560975609756, 0.006097560975609756, 0.018292682926829267, 0.024390243902439025, 0.036585365853658534, 0.054878048780487805, 0.07926829268292683, 0.0975609756097561, 0.14634146341463414], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/MSG.gap.json b/pfam_gap_rates/MSG.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..05cf20066ba84b01b4e7c9724c3ab0f30f091fc4
--- /dev/null
+++ b/pfam_gap_rates/MSG.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/MT.gap.json b/pfam_gap_rates/MT.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f077a461522f9f6b236ab711870c07418a64cd61
--- /dev/null
+++ b/pfam_gap_rates/MT.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/MT0933_antitox.gap.json b/pfam_gap_rates/MT0933_antitox.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..8631dbadc69e01da2d48f5fc21f36a6715825d0c
--- /dev/null
+++ b/pfam_gap_rates/MT0933_antitox.gap.json
@@ -0,0 +1 @@
+{"family": "MT0933_antitox", "n_seqs": 211, "length": 51, "gap_rates": [0.5687203791469194, 0.23222748815165878, 0.0995260663507109, 0.06635071090047394, 0.05687203791469194, 0.04265402843601896, 0.04265402843601896, 0.02843601895734597, 0.02843601895734597, 0.8388625592417062, 0.8341232227488151, 0.04739336492890995, 0.018957345971563982, 0.014218009478672985, 0.004739336492890996, 0.02843601895734597, 0.02843601895734597, 0.023696682464454975, 0.023696682464454975, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.009478672985781991, 0.004739336492890996, 0.0, 0.0, 0.023696682464454975, 0.04265402843601896, 0.004739336492890996, 0.004739336492890996, 0.0, 0.0, 0.0, 0.004739336492890996, 0.004739336492890996, 0.004739336492890996, 0.004739336492890996, 0.004739336492890996, 0.004739336492890996, 0.014218009478672985, 0.03317535545023697, 0.07109004739336493, 0.1943127962085308, 0.4312796208530806], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/MTHFR_C.gap.json b/pfam_gap_rates/MTHFR_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..19b6e6f28a4db7459f34dd0489ae4227e45dc2b8
--- /dev/null
+++ b/pfam_gap_rates/MTHFR_C.gap.json
@@ -0,0 +1 @@
+{"family": "MTHFR_C", "n_seqs": 256, "length": 98, "gap_rates": [0.6171875, 0.33984375, 0.2890625, 0.2265625, 0.18359375, 0.16015625, 0.14453125, 0.13671875, 0.12890625, 0.11328125, 0.10546875, 0.1015625, 0.0859375, 0.0859375, 0.08203125, 0.0703125, 0.0625, 0.0625, 0.0625, 0.0625, 0.0625, 0.0625, 0.0625, 0.0625, 0.0625, 0.0625, 0.0625, 0.0625, 0.0625, 0.0625, 0.0625, 0.0625, 0.0625, 0.0625, 0.06640625, 0.05859375, 0.0625, 0.0546875, 0.046875, 0.03515625, 0.12890625, 0.015625, 0.015625, 0.015625, 0.015625, 0.015625, 0.01171875, 0.01171875, 0.01171875, 0.01171875, 0.01171875, 0.01171875, 0.01171875, 0.01171875, 0.01171875, 0.86328125, 0.01171875, 0.01171875, 0.01171875, 0.01171875, 0.0078125, 0.0078125, 0.0078125, 0.05859375, 0.875, 0.01953125, 0.0078125, 0.0078125, 0.0078125, 0.0078125, 0.01171875, 0.03125, 0.03125, 0.03125, 0.03515625, 0.03125, 0.03125, 0.0390625, 0.03125, 0.03125, 0.03515625, 0.0390625, 0.03515625, 0.03515625, 0.0390625, 0.0390625, 0.0390625, 0.796875, 0.0546875, 0.0546875, 0.0625, 0.0703125, 0.08203125, 0.09765625, 0.10546875, 0.1171875, 0.1875, 0.546875], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/MWFE.gap.json b/pfam_gap_rates/MWFE.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b81d7e5a0ae511392ee3ee18be928fdf80531bb4
--- /dev/null
+++ b/pfam_gap_rates/MWFE.gap.json
@@ -0,0 +1 @@
+{"family": "MWFE", "n_seqs": 184, "length": 55, "gap_rates": [0.04891304347826087, 0.02717391304347826, 0.016304347826086956, 0.016304347826086956, 0.016304347826086956, 0.016304347826086956, 0.016304347826086956, 0.016304347826086956, 0.010869565217391304, 0.010869565217391304, 0.010869565217391304, 0.010869565217391304, 0.010869565217391304, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.005434782608695652, 0.1956521739130435, 0.005434782608695652, 0.005434782608695652, 0.005434782608695652, 0.005434782608695652, 0.005434782608695652, 0.005434782608695652, 0.005434782608695652, 0.010869565217391304, 0.010869565217391304, 0.010869565217391304, 0.010869565217391304, 0.010869565217391304, 0.021739130434782608, 0.03804347826086957, 0.05434782608695652, 0.059782608695652176, 0.04891304347826087, 0.04891304347826087, 0.04891304347826087, 0.04891304347826087, 0.05434782608695652, 0.059782608695652176, 0.22826086956521738, 0.28804347826086957], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Maf1.gap.json b/pfam_gap_rates/Maf1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..92b47f3948b427ca9177b48e9d0c9dfda92590f7
--- /dev/null
+++ b/pfam_gap_rates/Maf1.gap.json
@@ -0,0 +1 @@
+{"family": "Maf1", "n_seqs": 363, "length": 295, "gap_rates": [0.6446280991735537, 0.3278236914600551, 0.2534435261707989, 0.23140495867768596, 0.22589531680440772, 0.22589531680440772, 0.2231404958677686, 0.2231404958677686, 0.22038567493112948, 0.21763085399449036, 0.21763085399449036, 0.2066115702479339, 0.2066115702479339, 0.2066115702479339, 0.20110192837465565, 0.20110192837465565, 0.20110192837465565, 0.20110192837465565, 0.20110192837465565, 0.20110192837465565, 0.20110192837465565, 0.19559228650137742, 0.19559228650137742, 0.19559228650137742, 0.19559228650137742, 0.1928374655647383, 0.1928374655647383, 0.19559228650137742, 0.19559228650137742, 0.21212121212121213, 0.20385674931129477, 0.2066115702479339, 0.209366391184573, 0.1652892561983471, 0.23415977961432508, 0.25068870523415976, 0.2837465564738292, 0.371900826446281, 0.43526170798898073, 0.4793388429752066, 0.559228650137741, 0.6446280991735537, 0.6666666666666666, 0.6749311294765841, 0.6942148760330579, 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\ No newline at end of file
diff --git a/pfam_gap_rates/Mago-bind.gap.json b/pfam_gap_rates/Mago-bind.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c2f43ae694d3ca798b254ebe6d2d28424cbf85df
--- /dev/null
+++ b/pfam_gap_rates/Mago-bind.gap.json
@@ -0,0 +1 @@
+{"family": "Mago-bind", "n_seqs": 253, "length": 27, "gap_rates": [0.33201581027667987, 0.2015810276679842, 0.07509881422924901, 0.03557312252964427, 0.015810276679841896, 0.011857707509881422, 0.003952569169960474, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.003952569169960474, 0.003952569169960474, 0.0, 0.0, 0.0, 0.0, 0.003952569169960474, 0.003952569169960474, 0.003952569169960474, 0.003952569169960474, 0.015810276679841896, 0.03162055335968379], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Mannitol_dh.gap.json b/pfam_gap_rates/Mannitol_dh.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..84747272545cef0a710292980f590b8b9c2f1853
--- /dev/null
+++ b/pfam_gap_rates/Mannitol_dh.gap.json
@@ -0,0 +1 @@
+{"family": "Mannitol_dh", "n_seqs": 1123, "length": 176, "gap_rates": [0.8842386464826358, 0.10863757791629564, 0.02315227070347284, 0.01068566340160285, 0.01068566340160285, 0.01068566340160285, 0.01068566340160285, 0.01068566340160285, 0.01068566340160285, 0.01068566340160285, 0.01068566340160285, 0.009795191451469279, 0.009795191451469279, 0.009795191451469279, 0.26892252894033836, 0.26981300089047194, 0.26981300089047194, 0.40694568121104185, 0.01157613535173642, 0.012466607301869992, 0.014247551202137132, 0.016028495102404273, 0.031166518254674976, 0.03294746215494212, 0.016028495102404273, 0.025823686553873553, 0.6393588601959038, 0.0213713268032057, 0.016028495102404273, 0.014247551202137132, 0.009795191451469279, 0.008904719501335707, 0.008014247551202136, 0.008014247551202136, 0.008904719501335707, 0.007123775601068566, 0.008014247551202136, 0.008014247551202136, 0.008014247551202136, 0.008904719501335707, 0.008904719501335707, 0.008904719501335707, 0.008014247551202136, 0.008014247551202136, 0.7319679430097952, 0.6295636687444346, 0.27604630454140694, 0.26625111308993765, 0.2653606411398041, 0.008014247551202136, 0.008014247551202136, 0.008014247551202136, 0.008014247551202136, 0.008014247551202136, 0.008904719501335707, 0.008904719501335707, 0.008904719501335707, 0.008904719501335707, 0.008904719501335707, 0.008904719501335707, 0.008904719501335707, 0.009795191451469279, 0.7390917186108638, 0.27960819234194123, 0.8014247551202137, 0.8183437221727515, 0.8103294746215495, 0.8014247551202137, 0.18788958147818344, 0.015138023152270703, 0.008904719501335707, 0.008904719501335707, 0.008904719501335707, 0.008904719501335707, 0.008904719501335707, 0.012466607301869992, 0.01157613535173642, 0.008904719501335707, 0.008904719501335707, 0.008904719501335707, 0.009795191451469279, 0.01068566340160285, 0.009795191451469279, 0.009795191451469279, 0.009795191451469279, 0.009795191451469279, 0.01068566340160285, 0.018699910952804988, 0.07479964381121995, 0.9260908281389136, 0.9430097951914514, 0.8788958147818343, 0.3018699910952805, 0.0792520035618878, 0.031166518254674976, 0.01068566340160285, 0.009795191451469279, 0.009795191451469279, 0.009795191451469279, 0.009795191451469279, 0.009795191451469279, 0.009795191451469279, 0.27604630454140694, 0.26001780943900266, 0.01068566340160285, 0.01068566340160285, 0.01068566340160285, 0.01068566340160285, 0.01068566340160285, 0.01068566340160285, 0.01068566340160285, 0.01068566340160285, 0.01068566340160285, 0.01068566340160285, 0.26892252894033836, 0.2680320569902048, 0.5743544078361532, 0.5342831700801425, 0.27337488869100623, 0.2804986642920748, 0.5316117542297417, 0.28495102404274264, 0.2858414959928762, 0.2840605520926091, 0.28227960819234194, 0.2858414959928762, 0.2902938557435441, 0.04630454140694568, 0.04719501335707925, 0.04541406945681211, 0.04007123775601069, 0.04096170970614425, 0.04808548530721282, 0.04452359750667854, 0.041852181656277826, 0.04007123775601069, 0.04541406945681211, 0.0427426536064114, 0.04808548530721282, 0.051647373107747106, 0.2947462154942119, 0.4915405164737311, 0.4959928762243989, 0.5307212822796082, 0.8521816562778273, 0.9430097951914514, 0.9305431878895815, 0.5716829919857525, 0.5129118432769367, 0.4951024042742654, 0.4906500445235975, 0.3268032056990205, 0.3161175422974176, 0.3170080142475512, 0.3054318788958148, 0.2439893143365984, 0.0819234194122885, 0.07658058771148708, 0.060552092609082814, 0.05966162065894924, 0.07123775601068566, 0.06856634016028496, 0.06856634016028496, 0.07212822796081923, 0.08726625111308994, 0.06233303650934995, 0.05609973285841496, 0.05609973285841496, 0.05609973285841496, 0.0578806767586821, 0.05966162065894924, 0.06322350845948353, 0.07569011576135352, 0.0819234194122885, 0.09260908281389137, 0.48619768477292963], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/MarR_2.gap.json b/pfam_gap_rates/MarR_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..30c2ce3fe791890e49261e046cc7793084842197
--- /dev/null
+++ b/pfam_gap_rates/MarR_2.gap.json
@@ -0,0 +1 @@
+{"family": "MarR_2", "n_seqs": 5000, "length": 63, "gap_rates": [0.8006, 0.4412, 0.3048, 0.2454, 0.1966, 0.1554, 0.1212, 0.0942, 0.07, 0.0538, 0.0438, 0.0366, 0.0312, 0.022, 0.0216, 0.0188, 0.0136, 0.0136, 0.0782, 0.5554, 0.8806, 0.6456, 0.0724, 0.002, 0.0014, 0.0006, 0.0006, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0002, 0.0002, 0.0002, 0.0002, 0.0008, 0.001, 0.002, 0.0028, 0.0042, 0.0112, 0.0238, 0.0562, 0.0826, 0.1472, 0.137, 0.1324, 0.1432, 0.1588, 0.48], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/MatE.gap.json b/pfam_gap_rates/MatE.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c392138fab648106deceeab69d00e806a6688452
--- /dev/null
+++ b/pfam_gap_rates/MatE.gap.json
@@ -0,0 +1 @@
+{"family": "MatE", "n_seqs": 5000, "length": 167, "gap_rates": [0.3106, 0.279, 0.2252, 0.176, 0.1544, 0.136, 0.1234, 0.1134, 0.1076, 0.0968, 0.0878, 0.0814, 0.0776, 0.0708, 0.0666, 0.063, 0.0608, 0.059, 0.057, 0.055, 0.0526, 0.0508, 0.0466, 0.8864, 0.6296, 0.0444, 0.0424, 0.0392, 0.0378, 0.0366, 0.0354, 0.0344, 0.0332, 0.0322, 0.0316, 0.0318, 0.0316, 0.0306, 0.0302, 0.03, 0.0294, 0.0284, 0.0284, 0.0284, 0.0284, 0.904, 0.0282, 0.0276, 0.0266, 0.0266, 0.023, 0.023, 0.023, 0.0226, 0.0216, 0.0216, 0.0206, 0.0204, 0.0198, 0.0202, 0.0204, 0.0208, 0.0202, 0.0214, 0.0208, 0.0208, 0.02, 0.0232, 0.0208, 0.0204, 0.0196, 0.02, 0.0192, 0.0172, 0.0156, 0.016, 0.0162, 0.0166, 0.016, 0.0152, 0.0152, 0.0152, 0.0152, 0.0156, 0.0158, 0.0154, 0.0156, 0.0156, 0.0156, 0.0154, 0.0154, 0.015, 0.1438, 0.0144, 0.0152, 0.0156, 0.0152, 0.0148, 0.015, 0.016, 0.0158, 0.0156, 0.015, 0.015, 0.0176, 0.0166, 0.016, 0.016, 0.0202, 0.9004, 0.8554, 0.0196, 0.0174, 0.0166, 0.0164, 0.0164, 0.0166, 0.0174, 0.0172, 0.017, 0.0174, 0.0176, 0.0174, 0.0176, 0.018, 0.0182, 0.0182, 0.0186, 0.0188, 0.0192, 0.021, 0.0202, 0.0208, 0.0206, 0.021, 0.0212, 0.022, 0.0224, 0.0242, 0.0252, 0.026, 0.0266, 0.0272, 0.0284, 0.0294, 0.0292, 0.0304, 0.0316, 0.0324, 0.0336, 0.0342, 0.037, 0.0392, 0.0418, 0.045, 0.0526, 0.0574, 0.6428, 0.0714, 0.085, 0.1042, 0.1162, 0.1448, 0.1878, 0.2426, 0.347, 0.6066], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/MctB.gap.json b/pfam_gap_rates/MctB.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..0d727bf2bb9be78a5e431fd44f23564890493b1d
--- /dev/null
+++ b/pfam_gap_rates/MctB.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Med13_N.gap.json b/pfam_gap_rates/Med13_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e7e7cc1c89f05ceecba8360d1615ce96b3985857
--- /dev/null
+++ b/pfam_gap_rates/Med13_N.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Med16.gap.json b/pfam_gap_rates/Med16.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..2e66b2e0588da6da1f653b2d8c8d49249912d450
--- /dev/null
+++ b/pfam_gap_rates/Med16.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Melibiase.gap.json b/pfam_gap_rates/Melibiase.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..483ac6143e9f15d8fd381616a3f563a6efa75121
--- /dev/null
+++ b/pfam_gap_rates/Melibiase.gap.json
@@ -0,0 +1 @@
+{"family": "Melibiase", "n_seqs": 963, "length": 350, "gap_rates": [0.6105919003115264, 0.3333333333333333, 0.32087227414330216, 0.3146417445482866, 0.3001038421599169, 0.29906542056074764, 0.29387331256490135, 0.28868120456905505, 0.2866043613707165, 0.2834890965732087, 0.284527518172378, 0.2834890965732087, 0.2824506749740395, 0.3406022845275182, 0.2762201453790239, 0.27102803738317754, 0.2699896157840083, 0.26687435098650053, 0.2616822429906542, 0.2616822429906542, 0.26064382139148495, 0.2554517133956386, 0.2544132917964694, 0.2512980269989616, 0.24922118380062305, 0.24610591900311526, 0.22637590861889928, 0.21806853582554517, 0.21806853582554517, 0.2118380062305296, 0.37590861889927313, 0.3530633437175493, 0.3032191069574247, 0.23572170301142265, 0.2367601246105919, 0.22533748701973, 0.20145379023883697, 0.18795430944963656, 0.17964693665628245, 0.17445482866043613, 0.16822429906542055, 0.16614745586708204, 0.16303219106957426, 0.1536863966770509, 0.14641744548286603, 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\ No newline at end of file
diff --git a/pfam_gap_rates/MerT.gap.json b/pfam_gap_rates/MerT.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d5a5a555d6f4a299fd0c42d214d6fbec00c72330
--- /dev/null
+++ b/pfam_gap_rates/MerT.gap.json
@@ -0,0 +1 @@
+{"family": "MerT", "n_seqs": 158, "length": 117, "gap_rates": [0.7911392405063291, 0.7784810126582279, 0.7151898734177216, 0.7151898734177216, 0.6139240506329114, 0.5316455696202531, 0.4620253164556962, 0.41139240506329117, 0.35443037974683544, 0.3291139240506329, 0.3037974683544304, 0.2088607594936709, 0.14556962025316456, 0.08227848101265822, 0.08227848101265822, 0.06329113924050633, 0.06329113924050633, 0.06329113924050633, 0.06329113924050633, 0.05063291139240506, 0.05063291139240506, 0.05063291139240506, 0.0379746835443038, 0.0379746835443038, 0.0379746835443038, 0.03164556962025317, 0.03164556962025317, 0.02531645569620253, 0.02531645569620253, 0.0189873417721519, 0.0189873417721519, 0.0189873417721519, 0.0189873417721519, 0.012658227848101266, 0.012658227848101266, 0.0189873417721519, 0.03164556962025317, 0.012658227848101266, 0.0379746835443038, 0.17721518987341772, 0.012658227848101266, 0.012658227848101266, 0.02531645569620253, 0.02531645569620253, 0.012658227848101266, 0.012658227848101266, 0.006329113924050633, 0.006329113924050633, 0.006329113924050633, 0.006329113924050633, 0.006329113924050633, 0.006329113924050633, 0.006329113924050633, 0.006329113924050633, 0.006329113924050633, 0.012658227848101266, 0.012658227848101266, 0.006329113924050633, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.006329113924050633, 0.0, 0.0, 0.012658227848101266, 0.012658227848101266, 0.8544303797468354, 0.03164556962025317, 0.03164556962025317, 0.04430379746835443, 0.0379746835443038, 0.05063291139240506, 0.056962025316455694, 0.05063291139240506, 0.04430379746835443, 0.04430379746835443, 0.10759493670886076, 0.06962025316455696, 0.0379746835443038, 0.05063291139240506, 0.06329113924050633, 0.06329113924050633, 0.06329113924050633, 0.056962025316455694, 0.0759493670886076, 0.10126582278481013, 0.06962025316455696, 0.0759493670886076, 0.06962025316455696, 0.08860759493670886, 0.08227848101265822, 0.06329113924050633, 0.06962025316455696, 0.056962025316455694, 0.056962025316455694, 0.056962025316455694, 0.056962025316455694, 0.06329113924050633, 0.06329113924050633, 0.06329113924050633, 0.06329113924050633, 0.06329113924050633, 0.06962025316455696, 0.0759493670886076, 0.0759493670886076, 0.0759493670886076, 0.08860759493670886, 0.12658227848101267, 0.17721518987341772, 0.23417721518987342, 0.26582278481012656, 0.35443037974683544, 0.4936708860759494], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Metal_resist.gap.json b/pfam_gap_rates/Metal_resist.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..39a94b1d5a2953ed1b85c828ada68e1939430952
--- /dev/null
+++ b/pfam_gap_rates/Metal_resist.gap.json
@@ -0,0 +1 @@
+{"family": "Metal_resist", "n_seqs": 386, "length": 137, "gap_rates": [0.7305699481865285, 0.6062176165803109, 0.5025906735751295, 0.4378238341968912, 0.40932642487046633, 0.36787564766839376, 0.32124352331606215, 0.2927461139896373, 0.266839378238342, 0.2538860103626943, 0.23575129533678757, 0.23575129533678757, 0.22797927461139897, 0.22279792746113988, 0.21761658031088082, 0.20207253886010362, 0.19430051813471502, 0.19170984455958548, 0.18652849740932642, 0.18393782383419688, 0.17098445595854922, 0.15544041450777202, 0.14248704663212436, 0.14248704663212436, 0.13730569948186527, 0.13730569948186527, 0.15025906735751296, 0.20207253886010362, 0.24352331606217617, 0.34974093264248707, 0.4015544041450777, 0.34974093264248707, 0.6398963730569949, 0.7849740932642487, 0.844559585492228, 0.9093264248704663, 0.9378238341968912, 0.9430051813471503, 0.9196891191709845, 0.8756476683937824, 0.8186528497409327, 0.7227979274611399, 0.5595854922279793, 0.4585492227979275, 0.09326424870466321, 0.08549222797927461, 0.06735751295336788, 0.05181347150259067, 0.04145077720207254, 0.02849740932642487, 0.02072538860103627, 0.018134715025906734, 0.015544041450777202, 0.015544041450777202, 0.012953367875647668, 0.012953367875647668, 0.012953367875647668, 0.012953367875647668, 0.010362694300518135, 0.010362694300518135, 0.010362694300518135, 0.010362694300518135, 0.010362694300518135, 0.010362694300518135, 0.007772020725388601, 0.0051813471502590676, 0.0051813471502590676, 0.0051813471502590676, 0.0051813471502590676, 0.0051813471502590676, 0.02072538860103627, 0.007772020725388601, 0.007772020725388601, 0.0051813471502590676, 0.0051813471502590676, 0.007772020725388601, 0.0051813471502590676, 0.0051813471502590676, 0.010362694300518135, 0.010362694300518135, 0.0051813471502590676, 0.0025906735751295338, 0.0025906735751295338, 0.0025906735751295338, 0.0051813471502590676, 0.007772020725388601, 0.012953367875647668, 0.012953367875647668, 0.012953367875647668, 0.015544041450777202, 0.015544041450777202, 0.02072538860103627, 0.031088082901554404, 0.02849740932642487, 0.023316062176165803, 0.02849740932642487, 0.023316062176165803, 0.023316062176165803, 0.018134715025906734, 0.023316062176165803, 0.023316062176165803, 0.02072538860103627, 0.02072538860103627, 0.02072538860103627, 0.02072538860103627, 0.02072538860103627, 0.023316062176165803, 0.023316062176165803, 0.023316062176165803, 0.025906735751295335, 0.025906735751295335, 0.025906735751295335, 0.02849740932642487, 0.02849740932642487, 0.02849740932642487, 0.038860103626943004, 0.04145077720207254, 0.04404145077720207, 0.05181347150259067, 0.05699481865284974, 0.06735751295336788, 0.07512953367875648, 0.08290155440414508, 0.08290155440414508, 0.08808290155440414, 0.10103626943005181, 0.11398963730569948, 0.12694300518134716, 0.14248704663212436, 0.16580310880829016, 0.16839378238341968, 0.17098445595854922, 0.17875647668393782, 0.18911917098445596, 0.2823834196891192, 0.4274611398963731, 0.727979274611399], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Metallopep.gap.json b/pfam_gap_rates/Metallopep.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..3f6e189401e169b0b3936e4f261bf3aeaebccbb3
--- /dev/null
+++ b/pfam_gap_rates/Metallopep.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/MetallophosN.gap.json b/pfam_gap_rates/MetallophosN.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..56940ef9e8828fe9aed5db21263c21d36d6ff1b4
--- /dev/null
+++ b/pfam_gap_rates/MetallophosN.gap.json
@@ -0,0 +1 @@
+{"family": "MetallophosN", "n_seqs": 114, "length": 82, "gap_rates": [0.5175438596491229, 0.5, 0.4649122807017544, 0.41228070175438597, 0.8245614035087719, 0.21929824561403508, 0.08771929824561403, 0.008771929824561403, 0.008771929824561403, 0.008771929824561403, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.8771929824561403, 0.0, 0.0, 0.0, 0.0, 0.017543859649122806, 0.3684210526315789, 0.017543859649122806, 0.017543859649122806, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.03508771929824561, 0.06140350877192982, 0.07894736842105263, 0.07017543859649122, 0.07894736842105263, 0.32456140350877194, 0.9385964912280702, 0.05263157894736842, 0.043859649122807015, 0.02631578947368421, 0.02631578947368421, 0.03508771929824561, 0.05263157894736842, 0.07017543859649122, 0.11403508771929824, 0.18421052631578946, 0.5701754385964912, 0.5701754385964912, 0.8596491228070176, 0.4473684210526316, 0.41228070175438597, 0.42105263157894735, 0.4298245614035088, 0.4298245614035088, 0.4473684210526316, 0.4473684210526316, 0.4473684210526316, 0.5087719298245614, 0.5701754385964912], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Methyltransf_14.gap.json b/pfam_gap_rates/Methyltransf_14.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e74838105a5de9875904423b89e627e4f9f22829
--- /dev/null
+++ b/pfam_gap_rates/Methyltransf_14.gap.json
@@ -0,0 +1 @@
+{"family": "Methyltransf_14", "n_seqs": 463, "length": 160, "gap_rates": [0.6976241900647948, 0.3930885529157667, 0.3304535637149028, 0.32397408207343414, 0.3045356371490281, 0.3023758099352052, 0.2980561555075594, 0.2980561555075594, 0.2980561555075594, 0.2980561555075594, 0.2980561555075594, 0.2980561555075594, 0.2980561555075594, 0.30669546436285094, 0.775377969762419, 0.550755939524838, 0.3930885529157667, 0.37365010799136067, 0.30669546436285094, 0.2980561555075594, 0.2894168466522678, 0.28725701943844495, 0.28509719222462204, 0.28077753779697623, 0.27645788336933047, 0.27213822894168466, 0.27213822894168466, 0.27213822894168466, 0.2678185745140389, 0.2678185745140389, 0.265658747300216, 0.2634989200863931, 0.2634989200863931, 0.2613390928725702, 0.2634989200863931, 0.27429805615550756, 0.26997840172786175, 0.2634989200863931, 0.2505399568034557, 0.24622030237580994, 0.21814254859611232, 0.19870410367170627, 0.17494600431965443, 0.1511879049676026, 0.12958963282937366, 0.11663066954643629, 0.11447084233261338, 0.10583153347732181, 0.10151187904967603, 0.09503239740820735, 0.08639308855291576, 0.06911447084233262, 0.06695464362850972, 0.06695464362850972, 0.07127429805615551, 0.06695464362850972, 0.06263498920086392, 0.06047516198704104, 0.056155507559395246, 0.056155507559395246, 0.056155507559395246, 0.0755939524838013, 0.0755939524838013, 0.06263498920086392, 0.06263498920086392, 0.05399568034557235, 0.04103671706263499, 0.038876889848812095, 0.032397408207343416, 0.056155507559395246, 0.019438444924406047, 0.017278617710583154, 0.017278617710583154, 0.012958963282937365, 0.012958963282937365, 0.012958963282937365, 0.012958963282937365, 0.012958963282937365, 0.012958963282937365, 0.012958963282937365, 0.012958963282937365, 0.012958963282937365, 0.012958963282937365, 0.012958963282937365, 0.012958963282937365, 0.01511879049676026, 0.028077753779697623, 0.02159827213822894, 0.02159827213822894, 0.019438444924406047, 0.13174946004319654, 0.08423326133909287, 0.028077753779697623, 0.019438444924406047, 0.019438444924406047, 0.012958963282937365, 0.012958963282937365, 0.012958963282937365, 0.012958963282937365, 0.012958963282937365, 0.012958963282937365, 0.017278617710583154, 0.012958963282937365, 0.012958963282937365, 0.012958963282937365, 0.012958963282937365, 0.012958963282937365, 0.01079913606911447, 0.01079913606911447, 0.019438444924406047, 0.023758099352051837, 0.01511879049676026, 0.01511879049676026, 0.012958963282937365, 0.02159827213822894, 0.017278617710583154, 0.01079913606911447, 0.008639308855291577, 0.008639308855291577, 0.0064794816414686825, 0.0064794816414686825, 0.0064794816414686825, 0.01079913606911447, 0.01511879049676026, 0.02591792656587473, 0.032397408207343416, 0.012958963282937365, 0.01079913606911447, 0.012958963282937365, 0.012958963282937365, 0.01511879049676026, 0.017278617710583154, 0.019438444924406047, 0.023758099352051837, 0.032397408207343416, 0.02591792656587473, 0.023758099352051837, 0.023758099352051837, 0.023758099352051837, 0.02591792656587473, 0.03455723542116631, 0.04319654427645788, 0.058315334773218146, 0.07775377969762419, 0.09503239740820735, 0.12958963282937366, 0.19438444924406048, 0.24838012958963282, 0.27213822894168466, 0.28725701943844495, 0.28509719222462204, 0.2915766738660907, 0.3002159827213823, 0.2894168466522678, 0.2915766738660907, 0.2980561555075594, 0.30669546436285094, 0.31965442764578833, 0.326133909287257, 0.3563714902807775], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Methyltransf_19.gap.json b/pfam_gap_rates/Methyltransf_19.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..5e77ec4189e6abec231a95a0dcd883b7be993f87
--- /dev/null
+++ b/pfam_gap_rates/Methyltransf_19.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Methyltransf_23.gap.json b/pfam_gap_rates/Methyltransf_23.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f2c43934b33a0ac9af1561474f1151b88cb2d09f
--- /dev/null
+++ b/pfam_gap_rates/Methyltransf_23.gap.json
@@ -0,0 +1 @@
+{"family": "Methyltransf_23", "n_seqs": 5000, "length": 252, "gap_rates": [0.948, 0.926, 0.8992, 0.8726, 0.8234, 0.79, 0.7506, 0.7226, 0.669, 0.6314, 0.5902, 0.5448, 0.5218, 0.4718, 0.4536, 0.5298, 0.563, 0.9488, 0.9034, 0.2792, 0.2126, 0.1612, 0.1246, 0.0796, 0.9486, 0.9458, 0.061, 0.0542, 0.0516, 0.0494, 0.0478, 0.0476, 0.0478, 0.0474, 0.047, 0.0468, 0.9382, 0.0502, 0.0488, 0.0462, 0.0468, 0.0568, 0.0518, 0.9424, 0.8632, 0.0632, 0.0552, 0.0488, 0.9488, 0.9024, 0.065, 0.0498, 0.7754, 0.6408, 0.0366, 0.0334, 0.032, 0.0312, 0.031, 0.0308, 0.0308, 0.0352, 0.046, 0.064, 0.1006, 0.09, 0.0914, 0.1064, 0.1442, 0.2774, 0.4968, 0.5646, 0.6688, 0.7624, 0.8314, 0.8774, 0.9046, 0.921, 0.9346, 0.9436, 0.9492, 0.9472, 0.94, 0.9278, 0.9146, 0.89, 0.8546, 0.8008, 0.7204, 0.6166, 0.534, 0.4154, 0.2444, 0.2706, 0.2388, 0.2144, 0.1904, 0.1724, 0.1566, 0.1566, 0.1648, 0.178, 0.4948, 0.4082, 0.2914, 0.9112, 0.9388, 0.9476, 0.928, 0.8646, 0.2308, 0.2028, 0.1894, 0.1086, 0.9048, 0.9272, 0.9452, 0.9378, 0.9192, 0.8882, 0.0956, 0.0932, 0.0114, 0.837, 0.8544, 0.873, 0.8884, 0.908, 0.9194, 0.93, 0.939, 0.9444, 0.9332, 0.9264, 0.914, 0.897, 0.877, 0.8654, 0.8442, 0.8282, 0.0084, 0.0082, 0.0082, 0.0082, 0.0082, 0.0084, 0.0082, 0.0086, 0.0082, 0.0092, 0.0092, 0.009, 0.0096, 0.0122, 0.012, 0.9272, 0.8904, 0.0152, 0.9498, 0.9188, 0.0242, 0.0164, 0.0142, 0.0164, 0.0154, 0.0156, 0.0158, 0.0156, 0.0162, 0.0162, 0.0226, 0.0216, 0.0218, 0.0332, 0.034, 0.03, 0.0228, 0.0228, 0.0258, 0.0264, 0.0314, 0.0374, 0.95, 0.0498, 0.1412, 0.2162, 0.2486, 0.2636, 0.579, 0.6404, 0.7368, 0.8448, 0.8916, 0.928, 0.9398, 0.911, 0.8742, 0.7836, 0.7156, 0.6096, 0.543, 0.2008, 0.248, 0.2378, 0.2368, 0.234, 0.2458, 0.2398, 0.2306, 0.9248, 0.9424, 0.9496, 0.935, 0.9102, 0.2578, 0.8956, 0.2602, 0.2584, 0.2594, 0.2572, 0.2786, 0.34, 0.4712, 0.884, 0.9288, 0.8434, 0.2786, 0.2752, 0.2694, 0.8682, 0.8234, 0.2728, 0.273, 0.2714, 0.2748, 0.314, 0.282, 0.2792, 0.28, 0.2842, 0.288, 0.2928, 0.2982, 0.3152, 0.3294, 0.346, 0.3582, 0.3758, 0.4322, 0.493, 0.612, 0.7922], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Methyltransf_29.gap.json b/pfam_gap_rates/Methyltransf_29.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..40a3028fa441e3e3ad4e3f3e5e66336e38fe780c
--- /dev/null
+++ b/pfam_gap_rates/Methyltransf_29.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Methyltransf_33.gap.json b/pfam_gap_rates/Methyltransf_33.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..632f02ad47bef98a9380d50b47ad5f3947544f61
--- /dev/null
+++ b/pfam_gap_rates/Methyltransf_33.gap.json
@@ -0,0 +1 @@
+{"family": "Methyltransf_33", "n_seqs": 637, "length": 131, "gap_rates": [0.14756671899529042, 0.09419152276295134, 0.09105180533751962, 0.0847723704866562, 0.06593406593406594, 0.05180533751962323, 0.04866562009419152, 0.04395604395604396, 0.0423861852433281, 0.0423861852433281, 0.0423861852433281, 0.0423861852433281, 0.04395604395604396, 0.04395604395604396, 0.04081632653061224, 0.04081632653061224, 0.03767660910518053, 0.03610675039246468, 0.03924646781789639, 0.03767660910518053, 0.03610675039246468, 0.03610675039246468, 0.058084772370486655, 0.04866562009419152, 0.0282574568288854, 0.02511773940345369, 0.02511773940345369, 0.02511773940345369, 0.02511773940345369, 0.02511773940345369, 0.02511773940345369, 0.023547880690737835, 0.023547880690737835, 0.023547880690737835, 0.023547880690737835, 0.02511773940345369, 0.026687598116169546, 0.02511773940345369, 0.945054945054945, 0.02511773940345369, 0.7456828885400314, 0.029827315541601257, 0.02511773940345369, 0.02197802197802198, 0.015698587127158554, 0.01726844583987441, 0.01726844583987441, 0.015698587127158554, 0.015698587127158554, 0.01726844583987441, 0.02040816326530612, 0.02197802197802198, 0.018838304552590265, 0.02040816326530612, 0.9324960753532182, 0.9120879120879121, 0.01726844583987441, 0.01726844583987441, 0.015698587127158554, 0.018838304552590265, 0.0141287284144427, 0.015698587127158554, 0.015698587127158554, 0.0141287284144427, 0.012558869701726845, 0.012558869701726845, 0.012558869701726845, 0.012558869701726845, 0.012558869701726845, 0.012558869701726845, 0.012558869701726845, 0.012558869701726845, 0.015698587127158554, 0.0141287284144427, 0.015698587127158554, 0.08006279434850863, 0.1695447409733124, 0.49293563579277866, 0.9497645211930926, 0.5478806907378336, 0.141287284144427, 0.11145996860282574, 0.07692307692307693, 0.012558869701726845, 0.0141287284144427, 0.012558869701726845, 0.012558869701726845, 0.012558869701726845, 0.012558869701726845, 0.012558869701726845, 0.012558869701726845, 0.012558869701726845, 0.012558869701726845, 0.0141287284144427, 0.015698587127158554, 0.015698587127158554, 0.015698587127158554, 0.015698587127158554, 0.015698587127158554, 0.015698587127158554, 0.015698587127158554, 0.015698587127158554, 0.015698587127158554, 0.015698587127158554, 0.015698587127158554, 0.015698587127158554, 0.015698587127158554, 0.015698587127158554, 0.015698587127158554, 0.015698587127158554, 0.01726844583987441, 0.01726844583987441, 0.018838304552590265, 0.015698587127158554, 0.01726844583987441, 0.018838304552590265, 0.018838304552590265, 0.023547880690737835, 0.02511773940345369, 0.026687598116169546, 0.029827315541601257, 0.029827315541601257, 0.029827315541601257, 0.03139717425431711, 0.04081632653061224, 0.10675039246467818, 0.08634222919937205, 0.09105180533751962, 0.14756671899529042, 0.2119309262166405, 0.6813186813186813], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Methyltransf_7.gap.json b/pfam_gap_rates/Methyltransf_7.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f7bc58a59c9283d77d862b73ea4e467f09adb31c
--- /dev/null
+++ b/pfam_gap_rates/Methyltransf_7.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Mg-por_mtran_C.gap.json b/pfam_gap_rates/Mg-por_mtran_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..078d8fd58ca5d9ed9130a13cf91bbf65f1d4d7ba
--- /dev/null
+++ b/pfam_gap_rates/Mg-por_mtran_C.gap.json
@@ -0,0 +1 @@
+{"family": "Mg-por_mtran_C", "n_seqs": 165, "length": 101, "gap_rates": [0.024242424242424242, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.01818181818181818, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.006060606060606061, 0.03636363636363636, 0.04242424242424243, 0.03636363636363636, 0.703030303030303, 0.7757575757575758, 0.7757575757575758, 0.6848484848484848, 0.012121212121212121, 0.006060606060606061, 0.012121212121212121, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.006060606060606061, 0.006060606060606061, 0.07272727272727272, 0.503030303030303], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/MiaE.gap.json b/pfam_gap_rates/MiaE.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a509a136eb9a3674a3e9c00dbe980d1923dfcbad
--- /dev/null
+++ b/pfam_gap_rates/MiaE.gap.json
@@ -0,0 +1 @@
+{"family": "MiaE", "n_seqs": 468, "length": 247, "gap_rates": [0.8739316239316239, 0.811965811965812, 0.7692307692307693, 0.7243589743589743, 0.6923076923076923, 0.6816239316239316, 0.6773504273504274, 0.6623931623931624, 0.49572649572649574, 0.47863247863247865, 0.47863247863247865, 0.47435897435897434, 0.47435897435897434, 0.4722222222222222, 0.4722222222222222, 0.4722222222222222, 0.4722222222222222, 0.4722222222222222, 0.4722222222222222, 0.4722222222222222, 0.4722222222222222, 0.8504273504273504, 0.8568376068376068, 0.4829059829059829, 0.4722222222222222, 0.5106837606837606, 0.5106837606837606, 0.4700854700854701, 0.4700854700854701, 0.4700854700854701, 0.4700854700854701, 0.4700854700854701, 0.4700854700854701, 0.4700854700854701, 0.4700854700854701, 0.4700854700854701, 0.4700854700854701, 0.46794871794871795, 0.46794871794871795, 0.46794871794871795, 0.46794871794871795, 0.46794871794871795, 0.46794871794871795, 0.46794871794871795, 0.46794871794871795, 0.46794871794871795, 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\ No newline at end of file
diff --git a/pfam_gap_rates/Microtub_bd.gap.json b/pfam_gap_rates/Microtub_bd.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..54f5bb19294e8094c55403947a87542d56de1e28
--- /dev/null
+++ b/pfam_gap_rates/Microtub_bd.gap.json
@@ -0,0 +1 @@
+{"family": "Microtub_bd", "n_seqs": 153, "length": 192, "gap_rates": [0.8758169934640523, 0.6339869281045751, 0.49019607843137253, 0.43790849673202614, 0.41830065359477125, 0.22875816993464052, 0.1503267973856209, 0.13071895424836602, 0.11764705882352941, 0.10457516339869281, 0.10457516339869281, 0.10457516339869281, 0.10457516339869281, 0.09803921568627451, 0.09803921568627451, 0.08496732026143791, 0.08496732026143791, 0.08496732026143791, 0.0784313725490196, 0.06535947712418301, 0.058823529411764705, 0.058823529411764705, 0.058823529411764705, 0.058823529411764705, 0.058823529411764705, 0.058823529411764705, 0.058823529411764705, 0.058823529411764705, 0.058823529411764705, 0.058823529411764705, 0.058823529411764705, 0.058823529411764705, 0.06535947712418301, 0.0718954248366013, 0.0784313725490196, 0.16339869281045752, 0.39869281045751637, 0.5816993464052288, 0.7581699346405228, 0.8627450980392157, 0.8888888888888888, 0.934640522875817, 0.8954248366013072, 0.8758169934640523, 0.8366013071895425, 0.6535947712418301, 0.42483660130718953, 0.33986928104575165, 0.11764705882352941, 0.22875816993464052, 0.2222222222222222, 0.22875816993464052, 0.26143790849673204, 0.24836601307189543, 0.8888888888888888, 0.7712418300653595, 0.12418300653594772, 0.1830065359477124, 0.21568627450980393, 0.2549019607843137, 0.3464052287581699, 0.45098039215686275, 0.673202614379085, 0.7124183006535948, 0.7647058823529411, 0.803921568627451, 0.869281045751634, 0.934640522875817, 0.9411764705882353, 0.9215686274509803, 0.8431372549019608, 0.7843137254901961, 0.7254901960784313, 0.673202614379085, 0.5359477124183006, 0.40522875816993464, 0.28104575163398693, 0.22875816993464052, 0.20261437908496732, 0.1503267973856209, 0.13725490196078433, 0.13725490196078433, 0.13725490196078433, 0.11764705882352941, 0.11764705882352941, 0.11764705882352941, 0.11764705882352941, 0.11764705882352941, 0.11764705882352941, 0.1111111111111111, 0.11764705882352941, 0.1111111111111111, 0.09803921568627451, 0.09803921568627451, 0.09803921568627451, 0.09803921568627451, 0.09803921568627451, 0.10457516339869281, 0.10457516339869281, 0.9411764705882353, 0.934640522875817, 0.10457516339869281, 0.1111111111111111, 0.13071895424836602, 0.1437908496732026, 0.13725490196078433, 0.1503267973856209, 0.1568627450980392, 0.1568627450980392, 0.1568627450980392, 0.16993464052287582, 0.17647058823529413, 0.17647058823529413, 0.17647058823529413, 0.17647058823529413, 0.16993464052287582, 0.17647058823529413, 0.17647058823529413, 0.1830065359477124, 0.1895424836601307, 0.20915032679738563, 0.2222222222222222, 0.22875816993464052, 0.24836601307189543, 0.24836601307189543, 0.24836601307189543, 0.2549019607843137, 0.2679738562091503, 0.27450980392156865, 0.2875816993464052, 0.35294117647058826, 0.35947712418300654, 0.3660130718954248, 0.3660130718954248, 0.3660130718954248, 0.37254901960784315, 0.3790849673202614, 0.3790849673202614, 0.3790849673202614, 0.3660130718954248, 0.37254901960784315, 0.6797385620915033, 0.803921568627451, 0.7516339869281046, 0.6666666666666666, 0.47058823529411764, 0.46405228758169936, 0.45098039215686275, 0.38562091503267976, 0.40522875816993464, 0.39869281045751637, 0.39869281045751637, 0.40522875816993464, 0.41830065359477125, 0.4117647058823529, 0.4117647058823529, 0.4117647058823529, 0.4117647058823529, 0.41830065359477125, 0.43137254901960786, 0.43137254901960786, 0.43137254901960786, 0.43137254901960786, 0.43137254901960786, 0.43137254901960786, 0.43137254901960786, 0.43790849673202614, 0.6993464052287581, 0.5490196078431373, 0.49019607843137253, 0.49673202614379086, 0.49673202614379086, 0.49019607843137253, 0.49019607843137253, 0.49019607843137253, 0.49019607843137253, 0.49673202614379086, 0.5294117647058824, 0.5294117647058824, 0.5294117647058824, 0.5294117647058824, 0.5424836601307189, 0.5490196078431373, 0.5555555555555556, 0.5555555555555556, 0.5620915032679739, 0.5686274509803921, 0.5882352941176471, 0.6013071895424836, 0.6013071895424836, 0.6143790849673203, 0.6209150326797386], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/MinC_C.gap.json b/pfam_gap_rates/MinC_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..3dfb99841b1b687d43cf367cd043c4a89043bddf
--- /dev/null
+++ b/pfam_gap_rates/MinC_C.gap.json
@@ -0,0 +1 @@
+{"family": "MinC_C", "n_seqs": 814, "length": 111, "gap_rates": [0.5675675675675675, 0.1855036855036855, 0.11547911547911548, 0.042997542997543, 0.022113022113022112, 0.020884520884520884, 0.019656019656019656, 0.019656019656019656, 0.018427518427518427, 0.019656019656019656, 0.018427518427518427, 0.018427518427518427, 0.0171990171990172, 0.014742014742014743, 0.012285012285012284, 0.6633906633906634, 0.009828009828009828, 0.009828009828009828, 0.009828009828009828, 0.009828009828009828, 0.007371007371007371, 0.006142506142506142, 0.004914004914004914, 0.004914004914004914, 0.004914004914004914, 0.002457002457002457, 0.002457002457002457, 0.002457002457002457, 0.002457002457002457, 0.002457002457002457, 0.002457002457002457, 0.002457002457002457, 0.002457002457002457, 0.002457002457002457, 0.002457002457002457, 0.002457002457002457, 0.002457002457002457, 0.002457002457002457, 0.002457002457002457, 0.0012285012285012285, 0.0012285012285012285, 0.0036855036855036856, 0.002457002457002457, 0.004914004914004914, 0.004914004914004914, 0.004914004914004914, 0.004914004914004914, 0.013513513513513514, 0.02457002457002457, 0.025798525798525797, 0.025798525798525797, 0.030712530712530713, 0.029484029484029485, 0.03194103194103194, 0.02702702702702703, 0.02457002457002457, 0.02457002457002457, 0.02457002457002457, 0.022113022113022112, 0.022113022113022112, 0.022113022113022112, 0.02334152334152334, 0.02334152334152334, 0.02334152334152334, 0.02334152334152334, 0.02457002457002457, 0.02457002457002457, 0.02457002457002457, 0.02457002457002457, 0.02457002457002457, 0.02457002457002457, 0.02457002457002457, 0.7383292383292384, 0.025798525798525797, 0.028255528255528257, 0.028255528255528257, 0.030712530712530713, 0.25184275184275184, 0.23464373464373464, 0.05405405405405406, 0.05036855036855037, 0.051597051597051594, 0.06388206388206388, 0.7862407862407862, 0.09213759213759214, 0.07371007371007371, 0.20270270270270271, 0.8759213759213759, 0.47542997542997545, 0.11302211302211303, 0.07862407862407862, 0.8476658476658476, 0.9250614250614251, 0.941031941031941, 0.9090909090909091, 0.8439803439803439, 0.08722358722358722, 0.09213759213759214, 0.0945945945945946, 0.10073710073710074, 0.11056511056511056, 0.5282555282555282, 0.47665847665847666, 0.16461916461916462, 0.18181818181818182, 0.20147420147420148, 0.2199017199017199, 0.23832923832923833, 0.2800982800982801, 0.36855036855036855, 0.8488943488943489], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Mlh1_C.gap.json b/pfam_gap_rates/Mlh1_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e1a1e5c8c8670d188c5a2fc1e54b86b7987c97f2
--- /dev/null
+++ b/pfam_gap_rates/Mlh1_C.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Molybdop_Fe4S4.gap.json b/pfam_gap_rates/Molybdop_Fe4S4.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..3a3590057075f65ad5ba4de1e6c70f0ffcbc9353
--- /dev/null
+++ b/pfam_gap_rates/Molybdop_Fe4S4.gap.json
@@ -0,0 +1 @@
+{"family": "Molybdop_Fe4S4", "n_seqs": 3535, "length": 60, "gap_rates": [0.9057991513437058, 0.5405940594059406, 0.2862800565770863, 0.1586987270155587, 0.09193776520509193, 0.06195190947666195, 0.026025459688826025, 0.015275813295615276, 0.014144271570014143, 0.863083451202263, 0.009052333804809052, 0.008203677510608205, 0.008486562942008486, 0.006223479490806223, 0.006223479490806223, 0.005374823196605375, 0.005091937765205092, 0.005091937765205092, 0.005374823196605375, 0.0036775106082036777, 0.0033946251768033945, 0.004526166902404526, 0.906930693069307, 0.9411598302687412, 0.8718528995756718, 0.004809052333804809, 0.008203677510608205, 0.007355021216407355, 0.006789250353606789, 0.006789250353606789, 0.021216407355021217, 0.9473833097595474, 0.005657708628005658, 0.002545968882602546, 0.002545968882602546, 0.002545968882602546, 0.006789250353606789, 0.022347949080622348, 0.04667609618104668, 0.009618104667609617, 0.007072135785007072, 0.024893917963224894, 0.009618104667609617, 0.010466760961810467, 0.007072135785007072, 0.005091937765205092, 0.004526166902404526, 0.004526166902404526, 0.004809052333804809, 0.006506364922206506, 0.013012729844413012, 0.019801980198019802, 0.03338048090523338, 0.050353606789250355, 0.08656294200848656, 0.13267326732673268, 0.1932107496463932, 0.29448373408769446, 0.4359264497878359, 0.7575671852899576], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Mtc1.gap.json b/pfam_gap_rates/Mtc1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a9bf9249e9affd94c73c1e1cd1d4516e148e6c84
--- /dev/null
+++ b/pfam_gap_rates/Mtc1.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/MucB_RseB_C.gap.json b/pfam_gap_rates/MucB_RseB_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..03672f3daf9135d9b021009c2d73b10f88ce9638
--- /dev/null
+++ b/pfam_gap_rates/MucB_RseB_C.gap.json
@@ -0,0 +1 @@
+{"family": "MucB_RseB_C", "n_seqs": 222, "length": 115, "gap_rates": [0.8693693693693694, 0.4864864864864865, 0.21621621621621623, 0.12612612612612611, 0.07207207207207207, 0.06306306306306306, 0.04504504504504504, 0.04054054054054054, 0.0945945945945946, 0.036036036036036036, 0.03153153153153153, 0.03153153153153153, 0.02702702702702703, 0.02702702702702703, 0.02252252252252252, 0.02252252252252252, 0.02252252252252252, 0.02252252252252252, 0.02252252252252252, 0.02252252252252252, 0.02702702702702703, 0.02702702702702703, 0.02702702702702703, 0.04054054054054054, 0.04054054054054054, 0.8963963963963963, 0.9054054054054054, 0.9279279279279279, 0.9369369369369369, 0.9324324324324325, 0.9279279279279279, 0.8963963963963963, 0.8963963963963963, 0.3153153153153153, 0.22072072072072071, 0.18018018018018017, 0.15315315315315314, 0.9369369369369369, 0.12612612612612611, 0.07657657657657657, 0.9369369369369369, 0.9234234234234234, 0.02702702702702703, 0.0045045045045045045, 0.0045045045045045045, 0.0045045045045045045, 0.0045045045045045045, 0.0045045045045045045, 0.0045045045045045045, 0.0045045045045045045, 0.0045045045045045045, 0.0045045045045045045, 0.0045045045045045045, 0.0, 0.0, 0.0045045045045045045, 0.0045045045045045045, 0.0045045045045045045, 0.0045045045045045045, 0.0045045045045045045, 0.0045045045045045045, 0.0045045045045045045, 0.0045045045045045045, 0.009009009009009009, 0.02252252252252252, 0.009009009009009009, 0.5630630630630631, 0.9144144144144144, 0.8513513513513513, 0.1981981981981982, 0.009009009009009009, 0.009009009009009009, 0.009009009009009009, 0.009009009009009009, 0.009009009009009009, 0.009009009009009009, 0.009009009009009009, 0.009009009009009009, 0.013513513513513514, 0.013513513513513514, 0.013513513513513514, 0.009009009009009009, 0.009009009009009009, 0.009009009009009009, 0.009009009009009009, 0.009009009009009009, 0.009009009009009009, 0.8198198198198198, 0.8333333333333334, 0.8288288288288288, 0.7972972972972973, 0.009009009009009009, 0.009009009009009009, 0.009009009009009009, 0.009009009009009009, 0.009009009009009009, 0.009009009009009009, 0.009009009009009009, 0.009009009009009009, 0.009009009009009009, 0.009009009009009009, 0.009009009009009009, 0.009009009009009009, 0.009009009009009009, 0.009009009009009009, 0.009009009009009009, 0.009009009009009009, 0.009009009009009009, 0.013513513513513514, 0.013513513513513514, 0.02252252252252252, 0.03153153153153153, 0.05855855855855856, 0.11261261261261261, 0.6531531531531531], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Mucin.gap.json b/pfam_gap_rates/Mucin.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d18aa07ffb097e48eefc06d978e8c12948ebc471
--- /dev/null
+++ b/pfam_gap_rates/Mucin.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Mur_ligase_M.gap.json b/pfam_gap_rates/Mur_ligase_M.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..71daf8c82322938aad93d27948644d7c80412eae
--- /dev/null
+++ b/pfam_gap_rates/Mur_ligase_M.gap.json
@@ -0,0 +1 @@
+{"family": "Mur_ligase_M", "n_seqs": 5000, "length": 266, "gap_rates": [0.074, 0.0352, 0.0274, 0.0244, 0.0236, 0.0234, 0.0234, 0.0234, 0.0234, 0.0232, 0.0232, 0.023, 0.0224, 0.0224, 0.0224, 0.0224, 0.0224, 0.0224, 0.0222, 0.0222, 0.022, 0.8078, 0.834, 0.6316, 0.0332, 0.0346, 0.0324, 0.0312, 0.03, 0.0316, 0.0314, 0.022, 0.57, 0.5812, 0.587, 0.594, 0.6094, 0.6252, 0.708, 0.7788, 0.8008, 0.8064, 0.811, 0.8126, 0.8134, 0.8136, 0.8138, 0.8146, 0.816, 0.8178, 0.8288, 0.882, 0.9056, 0.9272, 0.9412, 0.918, 0.8934, 0.8528, 0.8222, 0.8164, 0.815, 0.8138, 0.8138, 0.8136, 0.813, 0.812, 0.809, 0.805, 0.7864, 0.7194, 0.6988, 0.612, 0.6076, 0.5912, 0.5844, 0.5714, 0.5594, 0.0256, 0.2648, 0.2414, 0.2356, 0.2244, 0.0874, 0.0448, 0.041, 0.0418, 0.0444, 0.0434, 0.0436, 0.1578, 0.1454, 0.1334, 0.1298, 0.1336, 0.3234, 0.0548, 0.0306, 0.0232, 0.0198, 0.0162, 0.016, 0.0156, 0.0156, 0.0152, 0.0152, 0.0152, 0.0156, 0.4062, 0.4002, 0.2954, 0.1612, 0.627, 0.124, 0.0464, 0.0292, 0.0314, 0.0566, 0.5178, 0.923, 0.8358, 0.0826, 0.025, 0.0196, 0.0134, 0.0134, 0.0132, 0.013, 0.013, 0.0128, 0.0128, 0.0136, 0.0136, 0.0142, 0.014, 0.0152, 0.0174, 0.0176, 0.0178, 0.0188, 0.757, 0.0166, 0.0166, 0.0166, 0.0186, 0.0186, 0.0194, 0.0182, 0.0174, 0.0194, 0.0216, 0.0222, 0.0232, 0.0226, 0.0222, 0.0234, 0.0566, 0.0744, 0.0816, 0.2482, 0.3286, 0.3224, 0.9444, 0.922, 0.0938, 0.0642, 0.0598, 0.0608, 0.0614, 0.0792, 0.0684, 0.0676, 0.069, 0.5236, 0.5046, 0.4794, 0.1622, 0.115, 0.1052, 0.1028, 0.1032, 0.1586, 0.1424, 0.1278, 0.1446, 0.2934, 0.2718, 0.2094, 0.9064, 0.1218, 0.1144, 0.115, 0.116, 0.1178, 0.1198, 0.124, 0.1286, 0.1378, 0.1554, 0.8606, 0.9088, 0.943, 0.9286, 0.8762, 0.8322, 0.587, 0.4198, 0.3302, 0.2892, 0.2708, 0.2494, 0.915, 0.204, 0.1816, 0.1776, 0.1788, 0.2634, 0.2494, 0.2, 0.1986, 0.1964, 0.201, 0.2108, 0.924, 0.9346, 0.9416, 0.9476, 0.9452, 0.9386, 0.9308, 0.9056, 0.387, 0.3418, 0.2726, 0.6124, 0.2926, 0.9224, 0.8682, 0.2704, 0.249, 0.2326, 0.2256, 0.219, 0.1962, 0.936, 0.7916, 0.1712, 0.1682, 0.1666, 0.1672, 0.1672, 0.1672, 0.1674, 0.1688, 0.1692, 0.1688, 0.1696, 0.1706, 0.1706, 0.1722, 0.1732, 0.1742, 0.1762, 0.182, 0.201, 0.258, 0.655], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Mus7.gap.json b/pfam_gap_rates/Mus7.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..41fabca397df446baa813e8a638d501a7baec0e3
--- /dev/null
+++ b/pfam_gap_rates/Mus7.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Muskelin_N.gap.json b/pfam_gap_rates/Muskelin_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..46d50f18da327378516c46cff6b76540304b67f5
--- /dev/null
+++ b/pfam_gap_rates/Muskelin_N.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Myb_DNA-bind_6.gap.json b/pfam_gap_rates/Myb_DNA-bind_6.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..93c38935852f16b7563b6107f2923394fec3a10e
--- /dev/null
+++ b/pfam_gap_rates/Myb_DNA-bind_6.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/N1221.gap.json b/pfam_gap_rates/N1221.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..21a17841a088a056378162ee8e7b2569517a8d21
--- /dev/null
+++ b/pfam_gap_rates/N1221.gap.json
@@ -0,0 +1 @@
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diff --git a/pfam_gap_rates/NAGLU_C.gap.json b/pfam_gap_rates/NAGLU_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..8f0edc1545f94f7335d3765d951601d53c8ab731
--- /dev/null
+++ b/pfam_gap_rates/NAGLU_C.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/NAT.gap.json b/pfam_gap_rates/NAT.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..0bdb8bc2ed33f7f7c01bf2c6b0c0b65d0406251a
--- /dev/null
+++ b/pfam_gap_rates/NAT.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/NCD2.gap.json b/pfam_gap_rates/NCD2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..650f76b764248054fb0356b7a14005422ec83a9f
--- /dev/null
+++ b/pfam_gap_rates/NCD2.gap.json
@@ -0,0 +1 @@
+{"family": "NCD2", "n_seqs": 124, "length": 158, "gap_rates": [0.9435483870967742, 0.9274193548387096, 0.8064516129032258, 0.782258064516129, 0.7338709677419355, 0.7258064516129032, 0.717741935483871, 0.8064516129032258, 0.8064516129032258, 0.6774193548387096, 0.8145161290322581, 0.9112903225806451, 0.9032258064516129, 0.7983870967741935, 0.6612903225806451, 0.5806451612903226, 0.5564516129032258, 0.5483870967741935, 0.5080645161290323, 0.5, 0.4596774193548387, 0.43548387096774194, 0.4112903225806452, 0.3870967741935484, 0.3870967741935484, 0.3387096774193548, 0.33064516129032256, 0.3225806451612903, 0.2661290322580645, 0.25806451612903225, 0.25806451612903225, 0.25806451612903225, 0.25806451612903225, 0.25, 0.25, 0.25, 0.25, 0.25, 0.25, 0.25, 0.25, 0.25, 0.25, 0.25, 0.25, 0.24193548387096775, 0.24193548387096775, 0.24193548387096775, 0.24193548387096775, 0.24193548387096775, 0.24193548387096775, 0.24193548387096775, 0.24193548387096775, 0.24193548387096775, 0.22580645161290322, 0.6693548387096774, 0.6774193548387096, 0.6693548387096774, 0.6612903225806451, 0.22580645161290322, 0.21774193548387097, 0.21774193548387097, 0.21774193548387097, 0.21774193548387097, 0.21774193548387097, 0.21774193548387097, 0.21774193548387097, 0.23387096774193547, 0.22580645161290322, 0.21774193548387097, 0.21774193548387097, 0.21774193548387097, 0.21774193548387097, 0.21774193548387097, 0.20967741935483872, 0.20161290322580644, 0.20161290322580644, 0.20967741935483872, 0.20967741935483872, 0.20967741935483872, 0.20967741935483872, 0.20967741935483872, 0.20161290322580644, 0.1693548387096774, 0.1532258064516129, 0.13709677419354838, 0.11290322580645161, 0.11290322580645161, 0.11290322580645161, 0.11290322580645161, 0.11290322580645161, 0.11290322580645161, 0.11290322580645161, 0.11290322580645161, 0.11290322580645161, 0.1532258064516129, 0.16129032258064516, 0.16129032258064516, 0.16129032258064516, 0.22580645161290322, 0.22580645161290322, 0.22580645161290322, 0.18548387096774194, 0.12903225806451613, 0.11290322580645161, 0.12903225806451613, 0.11290322580645161, 0.06451612903225806, 0.04838709677419355, 0.04838709677419355, 0.04838709677419355, 0.04032258064516129, 0.03225806451612903, 0.04032258064516129, 0.04838709677419355, 0.04838709677419355, 0.04838709677419355, 0.04838709677419355, 0.04838709677419355, 0.04838709677419355, 0.04838709677419355, 0.04838709677419355, 0.04838709677419355, 0.04838709677419355, 0.04838709677419355, 0.04838709677419355, 0.04838709677419355, 0.04032258064516129, 0.04032258064516129, 0.04032258064516129, 0.03225806451612903, 0.03225806451612903, 0.03225806451612903, 0.03225806451612903, 0.03225806451612903, 0.03225806451612903, 0.03225806451612903, 0.03225806451612903, 0.03225806451612903, 0.03225806451612903, 0.03225806451612903, 0.03225806451612903, 0.03225806451612903, 0.04032258064516129, 0.056451612903225805, 0.07258064516129033, 0.07258064516129033, 0.0967741935483871, 0.0967741935483871, 0.11290322580645161, 0.12096774193548387, 0.1532258064516129, 0.1935483870967742, 0.25, 0.28225806451612906, 0.43548387096774194, 0.4838709677419355, 0.7096774193548387], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/NDC10_II.gap.json b/pfam_gap_rates/NDC10_II.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..0b15f9dafe9f9cc4e3f1f4479e2ed208d93bb72d
--- /dev/null
+++ b/pfam_gap_rates/NDC10_II.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/NDUF_B8.gap.json b/pfam_gap_rates/NDUF_B8.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d9c0b4aed98d53a3293b2e754b0d50a8e9b39b4b
--- /dev/null
+++ b/pfam_gap_rates/NDUF_B8.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/NHase_alpha.gap.json b/pfam_gap_rates/NHase_alpha.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b35f4e7b6c7c3af4ed4b8f33e29daaaa4aff9251
--- /dev/null
+++ b/pfam_gap_rates/NHase_alpha.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/NHase_beta.gap.json b/pfam_gap_rates/NHase_beta.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..6eab9c05d62c402683d0b43aaa2ed6e33d41444b
--- /dev/null
+++ b/pfam_gap_rates/NHase_beta.gap.json
@@ -0,0 +1 @@
+{"family": "NHase_beta", "n_seqs": 223, "length": 261, "gap_rates": [0.6143497757847534, 0.5919282511210763, 0.5560538116591929, 0.5112107623318386, 0.5067264573991032, 0.5067264573991032, 0.4977578475336323, 0.4977578475336323, 0.4977578475336323, 0.48878923766816146, 0.484304932735426, 0.4798206278026906, 0.5695067264573991, 0.47085201793721976, 0.4349775784753363, 0.4260089686098655, 0.4170403587443946, 0.4080717488789238, 0.38565022421524664, 0.9461883408071748, 0.9237668161434978, 0.4977578475336323, 0.3991031390134529, 0.2645739910313901, 0.18834080717488788, 0.16591928251121077, 0.16591928251121077, 0.18385650224215247, 0.15695067264573992, 0.15246636771300448, 0.15246636771300448, 0.15246636771300448, 0.15246636771300448, 0.15246636771300448, 0.15246636771300448, 0.15246636771300448, 0.15246636771300448, 0.15246636771300448, 0.15246636771300448, 0.15246636771300448, 0.15246636771300448, 0.15246636771300448, 0.15246636771300448, 0.15695067264573992, 0.15246636771300448, 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\ No newline at end of file
diff --git a/pfam_gap_rates/NIPSNAP.gap.json b/pfam_gap_rates/NIPSNAP.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..639840990d3054fa4ba51882fcb3908ee8e17a67
--- /dev/null
+++ b/pfam_gap_rates/NIPSNAP.gap.json
@@ -0,0 +1 @@
+{"family": "NIPSNAP", "n_seqs": 857, "length": 105, "gap_rates": [0.44457409568261375, 0.30105017502917153, 0.20303383897316218, 0.11435239206534423, 0.07817969661610269, 0.056009334889148193, 0.05367561260210035, 0.051341890315052506, 0.046674445740956826, 0.046674445740956826, 0.043173862310385065, 0.042007001166861145, 0.038506417736289385, 0.03733955659276546, 0.03150525087514586, 0.030338389731621937, 0.9451575262543758, 0.17036172695449242, 0.028004667444574097, 0.026837806301050177, 0.026837806301050177, 0.029171528588098017, 0.03267211201866978, 0.03150525087514586, 0.022170361726954493, 0.021003500583430573, 0.022170361726954493, 0.023337222870478413, 0.022170361726954493, 0.021003500583430573, 0.3558926487747958, 0.3208868144690782, 0.01633605600933489, 0.011668611435239206, 0.010501750291715286, 0.009334889148191364, 0.009334889148191364, 0.009334889148191364, 0.009334889148191364, 0.005834305717619603, 0.005834305717619603, 0.058343057176196034, 0.019836639439906652, 0.008168028004667444, 0.010501750291715286, 0.01750291715285881, 0.8296382730455076, 0.049008168028004666, 0.012835472578763127, 0.010501750291715286, 0.012835472578763127, 0.012835472578763127, 0.010501750291715286, 0.011668611435239206, 0.011668611435239206, 0.010501750291715286, 0.010501750291715286, 0.010501750291715286, 0.01866977829638273, 0.023337222870478413, 0.022170361726954493, 0.022170361726954493, 0.022170361726954493, 0.022170361726954493, 0.023337222870478413, 0.024504084014002333, 0.026837806301050177, 0.028004667444574097, 0.030338389731621937, 0.030338389731621937, 0.03150525087514586, 0.042007001166861145, 0.044340723453908985, 0.051341890315052506, 0.05367561260210035, 0.059509918319719954, 0.8576429404900817, 0.1306884480746791, 0.10501750291715285, 0.10501750291715285, 0.11085180863477247, 0.09568261376896149, 0.10151691948658109, 0.10618436406067679, 0.11085180863477247, 0.11668611435239207, 0.12135355892648775, 0.6499416569428238, 0.6102683780630105, 0.14352392065344224, 0.1423570595099183, 0.13885647607934656, 0.1423570595099183, 0.14585764294049008, 0.1528588098016336, 0.15519253208868145, 0.15869311551925322, 0.15985997666277713, 0.176196032672112, 0.1971995332555426, 0.220536756126021, 0.3208868144690782, 0.40373395565927656, 0.5122520420070011, 0.5985997666277713], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/NLE.gap.json b/pfam_gap_rates/NLE.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..fe1fc33696212f86ae18590d358121e15d688756
--- /dev/null
+++ b/pfam_gap_rates/NLE.gap.json
@@ -0,0 +1 @@
+{"family": "NLE", "n_seqs": 557, "length": 78, "gap_rates": [0.3105924596050269, 0.19030520646319568, 0.10053859964093358, 0.08258527827648116, 0.06104129263913824, 0.059245960502693, 0.05565529622980251, 0.05565529622980251, 0.2459605026929982, 0.362657091561939, 0.12028725314183124, 0.7127468581687613, 0.4829443447037702, 0.26929982046678635, 0.0718132854578097, 0.4614003590664273, 0.42908438061041293, 0.39138240574506283, 0.01436265709156194, 0.010771992818671455, 0.010771992818671455, 0.010771992818671455, 0.008976660682226212, 0.008976660682226212, 0.008976660682226212, 0.008976660682226212, 0.008976660682226212, 0.008976660682226212, 0.008976660682226212, 0.008976660682226212, 0.008976660682226212, 0.005385996409335727, 0.005385996409335727, 0.003590664272890485, 0.005385996409335727, 0.003590664272890485, 0.005385996409335727, 0.005385996409335727, 0.005385996409335727, 0.933572710951526, 0.9317773788150808, 0.005385996409335727, 0.003590664272890485, 0.003590664272890485, 0.7109515260323159, 0.8761220825852782, 0.9497307001795332, 0.9353680430879713, 0.8043087971274686, 0.3895870736086176, 0.11131059245960502, 0.09874326750448834, 0.8545780969479354, 0.9353680430879713, 0.6570915619389587, 0.025134649910233394, 0.08976660682226212, 0.010771992818671455, 0.010771992818671455, 0.010771992818671455, 0.010771992818671455, 0.010771992818671455, 0.012567324955116697, 0.02154398563734291, 0.05565529622980251, 0.11131059245960502, 0.12387791741472172, 0.12746858168761221, 0.9156193895870736, 0.12926391382405744, 0.13464991023339318, 0.13644524236983843, 0.13644524236983843, 0.1400359066427289, 0.1561938958707361, 0.1741472172351885, 0.2746858168761221, 0.42010771992818674], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/NMD3.gap.json b/pfam_gap_rates/NMD3.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..12c1a974e9fd1bb0ef12abf46efbbfad936a21e8
--- /dev/null
+++ b/pfam_gap_rates/NMD3.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/NOGCT.gap.json b/pfam_gap_rates/NOGCT.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d1fbcb727c118f8174ca449c5a6a2cff995bd9a5
--- /dev/null
+++ b/pfam_gap_rates/NOGCT.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/NPC1_N.gap.json b/pfam_gap_rates/NPC1_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ff9269fd5e87075e64ca4919c2d9ab3d858bcbbf
--- /dev/null
+++ b/pfam_gap_rates/NPC1_N.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/NTP_transf_6.gap.json b/pfam_gap_rates/NTP_transf_6.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..264e45b1b0bc772a0902079a1e2c5e229706df2d
--- /dev/null
+++ b/pfam_gap_rates/NTP_transf_6.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/NTR2.gap.json b/pfam_gap_rates/NTR2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..8e1e2eda098ce18f4bbd7439b67fadbcea85c05d
--- /dev/null
+++ b/pfam_gap_rates/NTR2.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/NTase_sub_bind.gap.json b/pfam_gap_rates/NTase_sub_bind.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..6b7dc613b145425b5216df26466f778c8b6c82d1
--- /dev/null
+++ b/pfam_gap_rates/NTase_sub_bind.gap.json
@@ -0,0 +1 @@
+{"family": "NTase_sub_bind", "n_seqs": 376, "length": 141, "gap_rates": [0.7446808510638298, 0.3803191489361702, 0.2712765957446808, 0.22872340425531915, 0.20212765957446807, 0.17819148936170212, 0.1675531914893617, 0.1595744680851064, 0.15425531914893617, 0.15159574468085107, 0.14095744680851063, 0.1356382978723404, 0.11436170212765957, 0.11436170212765957, 0.11436170212765957, 0.11170212765957446, 0.11170212765957446, 0.10904255319148937, 0.14893617021276595, 0.5425531914893617, 0.625, 0.5585106382978723, 0.8111702127659575, 0.8563829787234043, 0.8962765957446809, 0.925531914893617, 0.9122340425531915, 0.875, 0.824468085106383, 0.8058510638297872, 0.16489361702127658, 0.08244680851063829, 0.08244680851063829, 0.0797872340425532, 0.07712765957446809, 0.07446808510638298, 0.07180851063829788, 0.06914893617021277, 0.06382978723404255, 0.06382978723404255, 0.061170212765957445, 0.061170212765957445, 0.061170212765957445, 0.061170212765957445, 0.061170212765957445, 0.05851063829787234, 0.05851063829787234, 0.05851063829787234, 0.061170212765957445, 0.05851063829787234, 0.05585106382978723, 0.05585106382978723, 0.05585106382978723, 0.05319148936170213, 0.05319148936170213, 0.0425531914893617, 0.0398936170212766, 0.0398936170212766, 0.0398936170212766, 0.0398936170212766, 0.03723404255319149, 0.03723404255319149, 0.848404255319149, 0.05851063829787234, 0.03723404255319149, 0.0425531914893617, 0.2978723404255319, 0.625, 0.10638297872340426, 0.03723404255319149, 0.03723404255319149, 0.031914893617021274, 0.034574468085106384, 0.8962765957446809, 0.9042553191489362, 0.7952127659574468, 0.034574468085106384, 0.031914893617021274, 0.02925531914893617, 0.026595744680851064, 0.026595744680851064, 0.023936170212765957, 0.023936170212765957, 0.023936170212765957, 0.02127659574468085, 0.02127659574468085, 0.02127659574468085, 0.02127659574468085, 0.02127659574468085, 0.8537234042553191, 0.8164893617021277, 0.018617021276595744, 0.02127659574468085, 0.047872340425531915, 0.023936170212765957, 0.018617021276595744, 0.949468085106383, 0.018617021276595744, 0.015957446808510637, 0.015957446808510637, 0.015957446808510637, 0.015957446808510637, 0.018617021276595744, 0.02127659574468085, 0.02127659574468085, 0.02127659574468085, 0.02127659574468085, 0.02127659574468085, 0.023936170212765957, 0.023936170212765957, 0.02925531914893617, 0.02925531914893617, 0.031914893617021274, 0.031914893617021274, 0.031914893617021274, 0.031914893617021274, 0.031914893617021274, 0.034574468085106384, 0.034574468085106384, 0.03723404255319149, 0.0425531914893617, 0.0398936170212766, 0.0398936170212766, 0.0398936170212766, 0.0398936170212766, 0.43882978723404253, 0.04521276595744681, 0.047872340425531915, 0.047872340425531915, 0.05053191489361702, 0.05053191489361702, 0.05585106382978723, 0.05851063829787234, 0.05851063829787234, 0.05851063829787234, 0.06648936170212766, 0.08776595744680851, 0.14361702127659576, 0.2074468085106383, 0.449468085106383, 0.898936170212766], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/NUMOD3.gap.json b/pfam_gap_rates/NUMOD3.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..9cc62b3c7685558373d8fd755cd294bbc0a88293
--- /dev/null
+++ b/pfam_gap_rates/NUMOD3.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Na_H_Exchanger.gap.json b/pfam_gap_rates/Na_H_Exchanger.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..7bb0cc53bd8c6eef8980547eafaae6f0d40c4e0c
--- /dev/null
+++ b/pfam_gap_rates/Na_H_Exchanger.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Na_H_antiporter.gap.json b/pfam_gap_rates/Na_H_antiporter.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..532b93bccf1c3fbe96479d7b80e16fb4fe02b6cb
--- /dev/null
+++ b/pfam_gap_rates/Na_H_antiporter.gap.json
@@ -0,0 +1 @@
+{"family": "Na_H_antiporter", "n_seqs": 2633, "length": 354, "gap_rates": [0.6908469426509685, 0.5921002658564375, 0.5666540068363084, 0.5495632358526396, 0.5408279529054311, 0.5396885681731864, 0.5248765666540068, 0.5199392328142803, 0.5161412837067983, 0.5119635396885682, 0.5112039498670717, 0.5104443600455754, 0.5142423091530574, 0.515381693885302, 0.5150018989745537, 0.5085453854918344, 0.5055070262058489, 0.5051272312951006, 0.5047474363843525, 0.5055070262058489, 0.5043676414736042, 0.5036080516521079, 0.5898214963919484, 0.5294341055829852, 0.5225977971895177, 0.5131029244208127, 0.5062666160273452, 0.5009494872768705, 0.4948727687048994, 0.49525256361564757, 0.4967717432586403, 0.761488796050133, 0.5958982149639195, 0.6897075579187238, 0.46676794530953286, 0.4641093809342955, 0.4633497911127991, 0.4614508165590581, 0.46296999620205087, 0.5377895936194454, 0.530953285225978, 0.4625902012913027, 0.4618306114698063, 0.4595518420053171, 0.45917204709456894, 0.45879225218382075, 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\ No newline at end of file
diff --git a/pfam_gap_rates/Ndc1_Nup.gap.json b/pfam_gap_rates/Ndc1_Nup.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c7b6aadb3760e16872aafef6526c61861b9c0d90
--- /dev/null
+++ b/pfam_gap_rates/Ndc1_Nup.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Neuralized.gap.json b/pfam_gap_rates/Neuralized.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d9cdf2c2510df362c31ab7eaea8d67ed51960704
--- /dev/null
+++ b/pfam_gap_rates/Neuralized.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Neurensin.gap.json b/pfam_gap_rates/Neurensin.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..849cfea2591ad31bf20d8e3619e06de96765c9ad
--- /dev/null
+++ b/pfam_gap_rates/Neurensin.gap.json
@@ -0,0 +1 @@
+{"family": "Neurensin", "n_seqs": 101, "length": 157, "gap_rates": [0.6435643564356436, 0.4158415841584158, 0.40594059405940597, 0.39603960396039606, 0.39603960396039606, 0.40594059405940597, 0.39603960396039606, 0.39603960396039606, 0.39603960396039606, 0.39603960396039606, 0.39603960396039606, 0.39603960396039606, 0.39603960396039606, 0.39603960396039606, 0.39603960396039606, 0.39603960396039606, 0.39603960396039606, 0.42574257425742573, 0.42574257425742573, 0.43564356435643564, 0.40594059405940597, 0.40594059405940597, 0.40594059405940597, 0.42574257425742573, 0.43564356435643564, 0.6138613861386139, 0.8811881188118812, 0.8910891089108911, 0.9108910891089109, 0.9306930693069307, 0.9405940594059405, 0.9306930693069307, 0.8910891089108911, 0.8811881188118812, 0.8712871287128713, 0.4158415841584158, 0.40594059405940597, 0.40594059405940597, 0.38613861386138615, 0.37623762376237624, 0.38613861386138615, 0.38613861386138615, 0.39603960396039606, 0.37623762376237624, 0.6633663366336634, 0.3564356435643564, 0.3465346534653465, 0.3465346534653465, 0.3465346534653465, 0.33663366336633666, 0.31683168316831684, 0.297029702970297, 0.297029702970297, 0.9405940594059405, 0.9405940594059405, 0.1485148514851485, 0.0297029702970297, 0.009900990099009901, 0.019801980198019802, 0.019801980198019802, 0.019801980198019802, 0.019801980198019802, 0.019801980198019802, 0.019801980198019802, 0.019801980198019802, 0.019801980198019802, 0.019801980198019802, 0.019801980198019802, 0.019801980198019802, 0.019801980198019802, 0.019801980198019802, 0.019801980198019802, 0.019801980198019802, 0.019801980198019802, 0.019801980198019802, 0.019801980198019802, 0.019801980198019802, 0.019801980198019802, 0.019801980198019802, 0.7524752475247525, 0.7920792079207921, 0.8316831683168316, 0.8316831683168316, 0.8316831683168316, 0.8316831683168316, 0.7722772277227723, 0.7524752475247525, 0.019801980198019802, 0.0297029702970297, 0.0297029702970297, 0.0297029702970297, 0.0297029702970297, 0.5247524752475248, 0.693069306930693, 0.5148514851485149, 0.40594059405940597, 0.0594059405940594, 0.039603960396039604, 0.039603960396039604, 0.039603960396039604, 0.039603960396039604, 0.0297029702970297, 0.0297029702970297, 0.0297029702970297, 0.0297029702970297, 0.0297029702970297, 0.0297029702970297, 0.0297029702970297, 0.0297029702970297, 0.0297029702970297, 0.0297029702970297, 0.0297029702970297, 0.04950495049504951, 0.04950495049504951, 0.0297029702970297, 0.0297029702970297, 0.0297029702970297, 0.0297029702970297, 0.0297029702970297, 0.0297029702970297, 0.0297029702970297, 0.0297029702970297, 0.0297029702970297, 0.0297029702970297, 0.0297029702970297, 0.0297029702970297, 0.0297029702970297, 0.0297029702970297, 0.0297029702970297, 0.0297029702970297, 0.0297029702970297, 0.0297029702970297, 0.0297029702970297, 0.0297029702970297, 0.0297029702970297, 0.0297029702970297, 0.04950495049504951, 0.04950495049504951, 0.9306930693069307, 0.9306930693069307, 0.0594059405940594, 0.0594059405940594, 0.0594059405940594, 0.06930693069306931, 0.0891089108910891, 0.12871287128712872, 0.2376237623762376, 0.39603960396039606, 0.42574257425742573, 0.44554455445544555, 0.4752475247524752, 0.49504950495049505, 0.5247524752475248, 0.5445544554455446, 0.594059405940594, 0.6534653465346535, 0.7722772277227723], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Neurexophilin.gap.json b/pfam_gap_rates/Neurexophilin.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e3e9333ae5b26d19b2ff87625ea1e5df5c80e32b
--- /dev/null
+++ b/pfam_gap_rates/Neurexophilin.gap.json
@@ -0,0 +1 @@
+{"family": "Neurexophilin", "n_seqs": 263, "length": 234, "gap_rates": [0.9391634980988594, 0.9277566539923955, 0.8479087452471483, 0.8326996197718631, 0.8288973384030418, 0.8288973384030418, 0.8288973384030418, 0.8288973384030418, 0.8250950570342205, 0.8250950570342205, 0.8250950570342205, 0.8250950570342205, 0.8212927756653993, 0.8631178707224335, 0.8326996197718631, 0.8212927756653993, 0.8022813688212928, 0.7680608365019012, 0.8821292775665399, 0.9049429657794676, 0.9467680608365019, 0.9125475285171103, 0.8973384030418251, 0.8783269961977186, 0.7262357414448669, 0.688212927756654, 0.6844106463878327, 0.6692015209125475, 0.6577946768060836, 0.6539923954372624, 0.6273764258555133, 0.6159695817490495, 0.6083650190114068, 0.6045627376425855, 0.6045627376425855, 0.6007604562737643, 0.6273764258555133, 0.623574144486692, 0.6159695817490495, 0.6083650190114068, 0.6045627376425855, 0.596958174904943, 0.7034220532319392, 0.7680608365019012, 0.7072243346007605, 0.623574144486692, 0.623574144486692, 0.5475285171102662, 0.5019011406844106, 0.4752851711026616, 0.4372623574144487, 0.39923954372623577, 0.3574144486692015, 0.33079847908745247, 0.3193916349809886, 0.8631178707224335, 0.8555133079847909, 0.49049429657794674, 0.24334600760456274, 0.19391634980988592, 0.18631178707224336, 0.16730038022813687, 0.12167300380228137, 0.11787072243346007, 0.11406844106463879, 0.10646387832699619, 0.09125475285171103, 0.6692015209125475, 0.08365019011406843, 0.08365019011406843, 0.08745247148288973, 0.3650190114068441, 0.08365019011406843, 0.08365019011406843, 0.08365019011406843, 0.08365019011406843, 0.08365019011406843, 0.08365019011406843, 0.9391634980988594, 0.08365019011406843, 0.9467680608365019, 0.9467680608365019, 0.08365019011406843, 0.07604562737642585, 0.07224334600760456, 0.06844106463878327, 0.9391634980988594, 0.9391634980988594, 0.057034220532319393, 0.053231939163498096, 0.045627376425855515, 0.045627376425855515, 0.045627376425855515, 0.045627376425855515, 0.045627376425855515, 0.045627376425855515, 0.045627376425855515, 0.045627376425855515, 0.049429657794676805, 0.049429657794676805, 0.049429657794676805, 0.049429657794676805, 0.049429657794676805, 0.049429657794676805, 0.049429657794676805, 0.049429657794676805, 0.049429657794676805, 0.049429657794676805, 0.049429657794676805, 0.049429657794676805, 0.049429657794676805, 0.049429657794676805, 0.053231939163498096, 0.053231939163498096, 0.049429657794676805, 0.045627376425855515, 0.053231939163498096, 0.049429657794676805, 0.049429657794676805, 0.053231939163498096, 0.049429657794676805, 0.049429657794676805, 0.049429657794676805, 0.053231939163498096, 0.053231939163498096, 0.053231939163498096, 0.049429657794676805, 0.053231939163498096, 0.060836501901140684, 0.6958174904942965, 0.5399239543726235, 0.5019011406844106, 0.12927756653992395, 0.12167300380228137, 0.11787072243346007, 0.12927756653992395, 0.12927756653992395, 0.13307984790874525, 0.12167300380228137, 0.12167300380228137, 0.11787072243346007, 0.11406844106463879, 0.09885931558935361, 0.09885931558935361, 0.6692015209125475, 0.09885931558935361, 0.10266159695817491, 0.10266159695817491, 0.11026615969581749, 0.11406844106463879, 0.11406844106463879, 0.12927756653992395, 0.9467680608365019, 0.13688212927756654, 0.12547528517110265, 0.13307984790874525, 0.13688212927756654, 0.10646387832699619, 0.12927756653992395, 0.12167300380228137, 0.10646387832699619, 0.10266159695817491, 0.10266159695817491, 0.11026615969581749, 0.10646387832699619, 0.10266159695817491, 0.11787072243346007, 0.11026615969581749, 0.9163498098859315, 0.9429657794676806, 0.9201520912547528, 0.9049429657794676, 0.12927756653992395, 0.11406844106463879, 0.9467680608365019, 0.11406844106463879, 0.11406844106463879, 0.11406844106463879, 0.11406844106463879, 0.11787072243346007, 0.11787072243346007, 0.11406844106463879, 0.11406844106463879, 0.11406844106463879, 0.11406844106463879, 0.11406844106463879, 0.11787072243346007, 0.11787072243346007, 0.11787072243346007, 0.11787072243346007, 0.11787072243346007, 0.11787072243346007, 0.12167300380228137, 0.12167300380228137, 0.12167300380228137, 0.12927756653992395, 0.13307984790874525, 0.13688212927756654, 0.13688212927756654, 0.8250950570342205, 0.1634980988593156, 0.23954372623574144, 0.2585551330798479, 0.2965779467680608, 0.3574144486692015, 0.39543726235741444, 0.4068441064638783, 0.467680608365019, 0.5019011406844106, 0.5361216730038023, 0.9277566539923955, 0.9277566539923955, 0.596958174904943, 0.6045627376425855, 0.6121673003802282, 0.6349809885931559, 0.6806083650190115, 0.7338403041825095, 0.7376425855513308, 0.7452471482889734, 0.7452471482889734, 0.7452471482889734, 0.7452471482889734, 0.7452471482889734, 0.7452471482889734, 0.7452471482889734, 0.7452471482889734, 0.7452471482889734, 0.7452471482889734, 0.7452471482889734, 0.7452471482889734, 0.8022813688212928, 0.8098859315589354, 0.8136882129277566], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/NiFeSe_Hases.gap.json b/pfam_gap_rates/NiFeSe_Hases.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..10e49d94b9291e01503266c709ef138757458c50
--- /dev/null
+++ b/pfam_gap_rates/NiFeSe_Hases.gap.json
@@ -0,0 +1 @@
+{"family": "NiFeSe_Hases", "n_seqs": 1946, "length": 542, "gap_rates": [0.40544707091469684, 0.394655704008222, 0.3910585817060637, 0.3895169578622816, 0.3859198355601233, 0.37821171634121276, 0.37307297019527236, 0.3720452209660843, 0.3725590955806783, 0.3710174717368962, 0.3710174717368962, 0.3710174717368962, 0.3710174717368962, 0.37050359712230213, 0.3699897225077081, 0.36896197327852004, 0.368448098663926, 0.36793422404933196, 0.36793422404933196, 0.36793422404933196, 0.36793422404933196, 0.36793422404933196, 0.36793422404933196, 0.36793422404933196, 0.36793422404933196, 0.368448098663926, 0.368448098663926, 0.36896197327852004, 0.368448098663926, 0.368448098663926, 0.368448098663926, 0.368448098663926, 0.36793422404933196, 0.36793422404933196, 0.36793422404933196, 0.36793422404933196, 0.36793422404933196, 0.36793422404933196, 0.36742034943473795, 0.36742034943473795, 0.36742034943473795, 0.3669064748201439, 0.3669064748201439, 0.3669064748201439, 0.3669064748201439, 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\ No newline at end of file
diff --git a/pfam_gap_rates/NiFe_hyd_SSU_C.gap.json b/pfam_gap_rates/NiFe_hyd_SSU_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e75ca6ddabde530f52d805fc11ec947e77d271e9
--- /dev/null
+++ b/pfam_gap_rates/NiFe_hyd_SSU_C.gap.json
@@ -0,0 +1 @@
+{"family": "NiFe_hyd_SSU_C", "n_seqs": 558, "length": 86, "gap_rates": [0.1827956989247312, 0.14157706093189965, 0.016129032258064516, 0.007168458781362007, 0.005376344086021506, 0.005376344086021506, 0.005376344086021506, 0.005376344086021506, 0.0035842293906810036, 0.0035842293906810036, 0.0035842293906810036, 0.005376344086021506, 0.005376344086021506, 0.007168458781362007, 0.008960573476702509, 0.008960573476702509, 0.008960573476702509, 0.007168458781362007, 0.005376344086021506, 0.010752688172043012, 0.005376344086021506, 0.005376344086021506, 0.0017921146953405018, 0.0017921146953405018, 0.0017921146953405018, 0.0017921146953405018, 0.32974910394265233, 0.4283154121863799, 0.47491039426523296, 0.45698924731182794, 0.40860215053763443, 0.0035842293906810036, 0.0035842293906810036, 0.0035842293906810036, 0.0035842293906810036, 0.0035842293906810036, 0.7777777777777778, 0.0035842293906810036, 0.0035842293906810036, 0.0035842293906810036, 0.0035842293906810036, 0.0035842293906810036, 0.0035842293906810036, 0.0035842293906810036, 0.007168458781362007, 0.007168458781362007, 0.007168458781362007, 0.007168458781362007, 0.007168458781362007, 0.007168458781362007, 0.007168458781362007, 0.007168458781362007, 0.007168458781362007, 0.007168458781362007, 0.005376344086021506, 0.005376344086021506, 0.24551971326164876, 0.942652329749104, 0.005376344086021506, 0.005376344086021506, 0.005376344086021506, 0.005376344086021506, 0.005376344086021506, 0.005376344086021506, 0.005376344086021506, 0.021505376344086023, 0.005376344086021506, 0.005376344086021506, 0.008960573476702509, 0.005376344086021506, 0.005376344086021506, 0.005376344086021506, 0.005376344086021506, 0.005376344086021506, 0.005376344086021506, 0.008960573476702509, 0.010752688172043012, 0.017921146953405017, 0.023297491039426525, 0.035842293906810034, 0.14157706093189965, 0.1989247311827957, 0.24372759856630824, 0.3118279569892473, 0.44802867383512546, 0.7526881720430108], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/NifW.gap.json b/pfam_gap_rates/NifW.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..03a9685f450aa54ebd79378569f0485951525db7
--- /dev/null
+++ b/pfam_gap_rates/NifW.gap.json
@@ -0,0 +1 @@
+{"family": "NifW", "n_seqs": 116, "length": 107, "gap_rates": [0.5, 0.16379310344827586, 0.08620689655172414, 0.017241379310344827, 0.017241379310344827, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.4396551724137931, 0.16379310344827586, 0.10344827586206896, 0.10344827586206896, 0.9396551724137931, 0.7413793103448276, 0.06896551724137931, 0.06896551724137931, 0.06896551724137931, 0.017241379310344827, 0.008620689655172414, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.008620689655172414, 0.008620689655172414, 0.017241379310344827, 0.017241379310344827, 0.017241379310344827, 0.017241379310344827, 0.017241379310344827, 0.017241379310344827, 0.017241379310344827, 0.05172413793103448, 0.0603448275862069, 0.06896551724137931, 0.07758620689655173, 0.06896551724137931, 0.06896551724137931, 0.08620689655172414, 0.08620689655172414, 0.08620689655172414, 0.08620689655172414, 0.08620689655172414, 0.08620689655172414, 0.08620689655172414, 0.08620689655172414, 0.08620689655172414, 0.10344827586206896, 0.10344827586206896, 0.10344827586206896, 0.5862068965517241, 0.7844827586206896, 0.8793103448275862, 0.896551724137931, 0.853448275862069, 0.7241379310344828, 0.4224137931034483, 0.12931034482758622, 0.12931034482758622, 0.12931034482758622, 0.15517241379310345, 0.15517241379310345, 0.15517241379310345, 0.20689655172413793, 0.33620689655172414], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Nnf1.gap.json b/pfam_gap_rates/Nnf1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..beb0c216c0f23781bc9a5d6b386f70a4bb8e8ad7
--- /dev/null
+++ b/pfam_gap_rates/Nnf1.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/NnrS.gap.json b/pfam_gap_rates/NnrS.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..7641c991a5ca68398a2b885eb782b2dfb0fb36cf
--- /dev/null
+++ b/pfam_gap_rates/NnrS.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/NnrU.gap.json b/pfam_gap_rates/NnrU.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..15cff921b24a717223ab9dcdfbd2c3a6801f97c5
--- /dev/null
+++ b/pfam_gap_rates/NnrU.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/NrfD.gap.json b/pfam_gap_rates/NrfD.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b806199ee0f928c5d9b0a638c5efc3d132c513bc
--- /dev/null
+++ b/pfam_gap_rates/NrfD.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Nucleoporin_C.gap.json b/pfam_gap_rates/Nucleoporin_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..612acdf5d5cba9096c20155bfaaaa1c542ffd102
--- /dev/null
+++ b/pfam_gap_rates/Nucleoporin_C.gap.json
@@ -0,0 +1 @@
+{"family": "Nucleoporin_C", "n_seqs": 472, "length": 809, "gap_rates": [0.8305084745762712, 0.7584745762711864, 0.7139830508474576, 0.690677966101695, 0.6758474576271186, 0.6758474576271186, 0.6716101694915254, 0.6716101694915254, 0.6716101694915254, 0.6716101694915254, 0.6694915254237288, 0.6694915254237288, 0.6694915254237288, 0.6694915254237288, 0.6694915254237288, 0.6694915254237288, 0.6694915254237288, 0.6694915254237288, 0.6673728813559322, 0.6673728813559322, 0.6673728813559322, 0.6673728813559322, 0.6694915254237288, 0.6694915254237288, 0.6694915254237288, 0.8665254237288136, 0.8559322033898306, 0.6652542372881356, 0.6652542372881356, 0.6610169491525424, 0.6610169491525424, 0.6610169491525424, 0.9067796610169492, 0.9067796610169492, 0.9110169491525424, 0.9110169491525424, 0.9110169491525424, 0.9067796610169492, 0.9067796610169492, 0.9067796610169492, 0.6588983050847458, 0.6546610169491526, 0.6504237288135594, 0.6504237288135594, 0.6483050847457628, 0.6440677966101694, 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\ No newline at end of file
diff --git a/pfam_gap_rates/OB_RNB.gap.json b/pfam_gap_rates/OB_RNB.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..dc29bca0a0ff1cfcb80befb05c1bbdb9f7aa1753
--- /dev/null
+++ b/pfam_gap_rates/OB_RNB.gap.json
@@ -0,0 +1 @@
+{"family": "OB_RNB", "n_seqs": 1613, "length": 61, "gap_rates": [0.34035957842529446, 0.2944823310601364, 0.28394296342219466, 0.277743335399876, 0.2709237445753255, 0.24798512089274644, 0.15623062616243025, 0.09237445753254804, 0.0712957222566646, 0.029758214507129573, 0.026038437693738377, 0.011779293242405457, 0.007439553626782393, 0.0043397396156230625, 0.0037197768133911966, 0.0037197768133911966, 0.02169869807811531, 0.6658400495970241, 0.47427154370737756, 0.10105393676379418, 0.0043397396156230625, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0006199628022318661, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0012399256044637321, 0.0012399256044637321, 0.0012399256044637321, 0.0018598884066955983, 0.0043397396156230625, 0.007439553626782393, 0.47117172969621823, 0.08059516429014259, 0.038437693738375696, 0.02727836329820211, 0.026038437693738377, 0.034097954122752634, 0.03967761934283943, 0.04587724736515809, 0.053316800991940486, 0.06137631742095474, 0.0731556106633602, 0.08431494110353378, 0.1078735275883447, 0.17110973341599503, 0.2901425914445133], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/OB_aCoA_assoc.gap.json b/pfam_gap_rates/OB_aCoA_assoc.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..97ef2faaccf48f7d0034a304797a0d014d8d8866
--- /dev/null
+++ b/pfam_gap_rates/OB_aCoA_assoc.gap.json
@@ -0,0 +1 @@
+{"family": "OB_aCoA_assoc", "n_seqs": 970, "length": 75, "gap_rates": [0.6134020618556701, 0.31958762886597936, 0.18762886597938144, 0.09278350515463918, 0.06804123711340206, 0.050515463917525774, 0.029896907216494847, 0.015463917525773196, 0.01443298969072165, 0.012371134020618556, 0.01134020618556701, 0.010309278350515464, 0.010309278350515464, 0.010309278350515464, 0.05154639175257732, 0.030927835051546393, 0.027835051546391754, 0.02268041237113402, 0.01443298969072165, 0.016494845360824743, 0.8804123711340206, 0.911340206185567, 0.945360824742268, 0.8927835051546392, 0.7030927835051546, 0.2804123711340206, 0.1577319587628866, 0.10927835051546392, 0.06701030927835051, 0.042268041237113405, 0.026804123711340205, 0.005154639175257732, 0.0010309278350515464, 0.002061855670103093, 0.002061855670103093, 0.0010309278350515464, 0.0, 0.0, 0.0, 0.0, 0.0, 0.002061855670103093, 0.005154639175257732, 0.9195876288659793, 0.7783505154639175, 0.04536082474226804, 0.029896907216494847, 0.008247422680412371, 0.8958762886597939, 0.0, 0.0010309278350515464, 0.0010309278350515464, 0.002061855670103093, 0.002061855670103093, 0.002061855670103093, 0.021649484536082474, 0.015463917525773196, 0.024742268041237112, 0.04845360824742268, 0.05154639175257732, 0.06494845360824743, 0.9195876288659793, 0.8680412371134021, 0.0443298969072165, 0.05154639175257732, 0.01134020618556701, 0.01134020618556701, 0.01134020618556701, 0.01443298969072165, 0.01752577319587629, 0.032989690721649485, 0.06907216494845361, 0.13814432989690723, 0.25257731958762886, 0.5319587628865979], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/OHCU_decarbox.gap.json b/pfam_gap_rates/OHCU_decarbox.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c5e0d60c883195f8db7e6f062a1ad0618c4ee6e2
--- /dev/null
+++ b/pfam_gap_rates/OHCU_decarbox.gap.json
@@ -0,0 +1 @@
+{"family": "OHCU_decarbox", "n_seqs": 665, "length": 186, "gap_rates": [0.5849624060150376, 0.2962406015037594, 0.20902255639097744, 0.17142857142857143, 0.15037593984962405, 0.13984962406015036, 0.13233082706766916, 0.12030075187969924, 0.11578947368421053, 0.10676691729323308, 0.09924812030075188, 0.08571428571428572, 0.081203007518797, 0.061654135338345864, 0.061654135338345864, 0.061654135338345864, 0.061654135338345864, 0.05714285714285714, 0.05112781954887218, 0.045112781954887216, 0.04360902255639098, 0.042105263157894736, 0.042105263157894736, 0.039097744360902256, 0.039097744360902256, 0.039097744360902256, 0.03759398496240601, 0.6977443609022557, 0.7293233082706767, 0.9308270676691729, 0.9428571428571428, 0.9172932330827067, 0.7127819548872181, 0.6360902255639098, 0.03458646616541353, 0.06315789473684211, 0.9458646616541353, 0.6586466165413534, 0.039097744360902256, 0.042105263157894736, 0.039097744360902256, 0.039097744360902256, 0.03759398496240601, 0.03308270676691729, 0.031578947368421054, 0.03007518796992481, 0.03007518796992481, 0.03007518796992481, 0.03007518796992481, 0.031578947368421054, 0.03007518796992481, 0.03007518796992481, 0.03007518796992481, 0.03308270676691729, 0.03458646616541353, 0.03458646616541353, 0.03308270676691729, 0.8857142857142857, 0.8872180451127819, 0.8947368421052632, 0.9428571428571428, 0.9007518796992481, 0.8917293233082707, 0.8857142857142857, 0.8781954887218045, 0.03007518796992481, 0.03308270676691729, 0.031578947368421054, 0.031578947368421054, 0.03007518796992481, 0.03007518796992481, 0.03007518796992481, 0.03007518796992481, 0.03007518796992481, 0.031578947368421054, 0.03458646616541353, 0.039097744360902256, 0.039097744360902256, 0.042105263157894736, 0.04360902255639098, 0.042105263157894736, 0.0406015037593985, 0.24360902255639097, 0.8902255639097745, 0.9007518796992481, 0.8721804511278195, 0.35639097744360904, 0.3458646616541353, 0.32781954887218046, 0.2, 0.10827067669172932, 0.06917293233082707, 0.055639097744360905, 0.0406015037593985, 0.039097744360902256, 0.03609022556390978, 0.03458646616541353, 0.03308270676691729, 0.03308270676691729, 0.03308270676691729, 0.03458646616541353, 0.031578947368421054, 0.031578947368421054, 0.03308270676691729, 0.03759398496240601, 0.3879699248120301, 0.9368421052631579, 0.45864661654135336, 0.1368421052631579, 0.07067669172932331, 0.06315789473684211, 0.04360902255639098, 0.02406015037593985, 0.02406015037593985, 0.021052631578947368, 0.016541353383458645, 0.01804511278195489, 0.01804511278195489, 0.016541353383458645, 0.016541353383458645, 0.016541353383458645, 0.016541353383458645, 0.016541353383458645, 0.016541353383458645, 0.01804511278195489, 0.01804511278195489, 0.01804511278195489, 0.016541353383458645, 0.016541353383458645, 0.8390977443609022, 0.016541353383458645, 0.016541353383458645, 0.015037593984962405, 0.015037593984962405, 0.015037593984962405, 0.016541353383458645, 0.015037593984962405, 0.015037593984962405, 0.015037593984962405, 0.9368421052631579, 0.9383458646616541, 0.9413533834586466, 0.9383458646616541, 0.9368421052631579, 0.015037593984962405, 0.016541353383458645, 0.01804511278195489, 0.01804511278195489, 0.019548872180451128, 0.9308270676691729, 0.019548872180451128, 0.019548872180451128, 0.019548872180451128, 0.022556390977443608, 0.022556390977443608, 0.02406015037593985, 0.02406015037593985, 0.02706766917293233, 0.02857142857142857, 0.031578947368421054, 0.031578947368421054, 0.031578947368421054, 0.9473684210526315, 0.825563909774436, 0.03308270676691729, 0.03308270676691729, 0.03308270676691729, 0.03308270676691729, 0.03308270676691729, 0.03308270676691729, 0.03308270676691729, 0.03308270676691729, 0.03308270676691729, 0.03308270676691729, 0.03458646616541353, 0.042105263157894736, 0.04360902255639098, 0.04661654135338346, 0.04661654135338346, 0.04661654135338346, 0.04661654135338346, 0.04661654135338346, 0.04962406015037594, 0.04962406015037594, 0.05714285714285714, 0.4496240601503759], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/OMP_b-brl_2.gap.json b/pfam_gap_rates/OMP_b-brl_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..912b028597d37f5928d58387ed1a00bdea87f928
--- /dev/null
+++ b/pfam_gap_rates/OMP_b-brl_2.gap.json
@@ -0,0 +1 @@
+{"family": "OMP_b-brl_2", "n_seqs": 1185, "length": 258, "gap_rates": [0.9274261603375528, 0.7510548523206751, 0.7172995780590717, 0.7122362869198312, 0.8438818565400844, 0.8421940928270042, 0.8371308016877637, 0.8835443037974684, 0.9172995780590717, 0.9392405063291139, 0.9291139240506329, 0.9037974683544304, 0.869198312236287, 0.7544303797468355, 0.679324894514768, 0.5274261603375527, 0.42025316455696204, 0.30464135021097044, 0.2590717299578059, 0.2210970464135021, 0.20253164556962025, 0.18565400843881857, 0.18059071729957807, 0.17552742616033756, 0.16455696202531644, 0.16371308016877636, 0.15949367088607594, 0.15780590717299578, 0.15527426160337554, 0.1569620253164557, 0.15611814345991562, 0.15527426160337554, 0.15611814345991562, 0.5510548523206751, 0.6919831223628692, 0.7991561181434599, 0.8540084388185654, 0.9046413502109705, 0.9459915611814346, 0.9282700421940928, 0.8852320675105485, 0.8278481012658228, 0.7274261603375527, 0.6506329113924051, 0.5341772151898734, 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\ No newline at end of file
diff --git a/pfam_gap_rates/OMP_b-brl_3.gap.json b/pfam_gap_rates/OMP_b-brl_3.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ca49c598d3fdab7b8458cbcc3b4c222d702ab7ee
--- /dev/null
+++ b/pfam_gap_rates/OMP_b-brl_3.gap.json
@@ -0,0 +1 @@
+{"family": "OMP_b-brl_3", "n_seqs": 1368, "length": 560, "gap_rates": [0.7595029239766082, 0.6206140350877193, 0.5730994152046783, 0.5343567251461988, 0.5087719298245614, 0.5241228070175439, 0.4590643274853801, 0.4451754385964912, 0.42616959064327486, 0.40497076023391815, 0.39766081871345027, 0.391812865497076, 0.38669590643274854, 0.38596491228070173, 0.3845029239766082, 0.3815789473684211, 0.3815789473684211, 0.3815789473684211, 0.3793859649122807, 0.37792397660818716, 0.3757309941520468, 0.37646198830409355, 0.375, 0.39473684210526316, 0.42543859649122806, 0.4130116959064328, 0.3742690058479532, 0.3713450292397661, 0.3830409356725146, 0.45394736842105265, 0.5021929824561403, 0.40497076023391815, 0.45321637426900585, 0.4934210526315789, 0.4824561403508772, 0.5153508771929824, 0.49707602339181284, 0.4597953216374269, 0.47441520467836257, 0.45248538011695905, 0.4166666666666667, 0.4590643274853801, 0.4415204678362573, 0.40862573099415206, 0.385233918128655, 0.38011695906432746, 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\ No newline at end of file
diff --git a/pfam_gap_rates/ORC4_C.gap.json b/pfam_gap_rates/ORC4_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..0045c4774db95801065b74431166d32ecc9f277d
--- /dev/null
+++ b/pfam_gap_rates/ORC4_C.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/ORMDL.gap.json b/pfam_gap_rates/ORMDL.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..81626eeb9afbb17f5b0de0b7847bfff0548699a8
--- /dev/null
+++ b/pfam_gap_rates/ORMDL.gap.json
@@ -0,0 +1 @@
+{"family": "ORMDL", "n_seqs": 326, "length": 138, "gap_rates": [0.1411042944785276, 0.11042944785276074, 0.10429447852760736, 0.09815950920245399, 0.0950920245398773, 0.0950920245398773, 0.09202453987730061, 0.09202453987730061, 0.09202453987730061, 0.08588957055214724, 0.07975460122699386, 0.07975460122699386, 0.07975460122699386, 0.07975460122699386, 0.07975460122699386, 0.07975460122699386, 0.07668711656441718, 0.07668711656441718, 0.07668711656441718, 0.07668711656441718, 0.07668711656441718, 0.0736196319018405, 0.0736196319018405, 0.0736196319018405, 0.0736196319018405, 0.0736196319018405, 0.0736196319018405, 0.0736196319018405, 0.0736196319018405, 0.0736196319018405, 0.17484662576687116, 0.12576687116564417, 0.0705521472392638, 0.0705521472392638, 0.0705521472392638, 0.06748466257668712, 0.06441717791411043, 0.06441717791411043, 0.06441717791411043, 0.06441717791411043, 0.06441717791411043, 0.06441717791411043, 0.06441717791411043, 0.06441717791411043, 0.06134969325153374, 0.05521472392638037, 0.05214723926380368, 0.03987730061349693, 0.03680981595092025, 0.03987730061349693, 0.03987730061349693, 0.03987730061349693, 0.03374233128834356, 0.03374233128834356, 0.03680981595092025, 0.03680981595092025, 0.03680981595092025, 0.03680981595092025, 0.03374233128834356, 0.03374233128834356, 0.03374233128834356, 0.03374233128834356, 0.03374233128834356, 0.03374233128834356, 0.6012269938650306, 0.8926380368098159, 0.0705521472392638, 0.06748466257668712, 0.0705521472392638, 0.03680981595092025, 0.03374233128834356, 0.03374233128834356, 0.03680981595092025, 0.03987730061349693, 0.03680981595092025, 0.03680981595092025, 0.03680981595092025, 0.03987730061349693, 0.03987730061349693, 0.03680981595092025, 0.03987730061349693, 0.03987730061349693, 0.03987730061349693, 0.03987730061349693, 0.03987730061349693, 0.03987730061349693, 0.03987730061349693, 0.03987730061349693, 0.03987730061349693, 0.03987730061349693, 0.03987730061349693, 0.03987730061349693, 0.03680981595092025, 0.03987730061349693, 0.03680981595092025, 0.03680981595092025, 0.03987730061349693, 0.03987730061349693, 0.03987730061349693, 0.03987730061349693, 0.05214723926380368, 0.05214723926380368, 0.05214723926380368, 0.05521472392638037, 0.05521472392638037, 0.06134969325153374, 0.0705521472392638, 0.0705521472392638, 0.0705521472392638, 0.0736196319018405, 0.0736196319018405, 0.08282208588957055, 0.08588957055214724, 0.08282208588957055, 0.08282208588957055, 0.08282208588957055, 0.08282208588957055, 0.08282208588957055, 0.08282208588957055, 0.08282208588957055, 0.08282208588957055, 0.08282208588957055, 0.08282208588957055, 0.08588957055214724, 0.08588957055214724, 0.9355828220858896, 0.08588957055214724, 0.08588957055214724, 0.08588957055214724, 0.08588957055214724, 0.08588957055214724, 0.0950920245398773, 0.0950920245398773, 0.09815950920245399, 0.13190184049079753, 0.1411042944785276, 0.1411042944785276, 0.1441717791411043], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/OTCace_N.gap.json b/pfam_gap_rates/OTCace_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..fa557642e4487c18c466ab6741d1005c94d5d0b9
--- /dev/null
+++ b/pfam_gap_rates/OTCace_N.gap.json
@@ -0,0 +1 @@
+{"family": "OTCace_N", "n_seqs": 4519, "length": 162, "gap_rates": [0.25669395884045143, 0.09426864350520027, 0.053330382828059304, 0.04558530648373534, 0.040495684886036734, 0.03717636645275504, 0.03474219960168179, 0.03208674485505643, 0.031422881168400085, 0.03098030537729586, 0.05178136755919451, 0.04779818543925647, 0.026997123257357824, 0.026333259570701484, 0.026111971675149368, 0.025005532197388804, 0.023899092719628236, 0.023235229032971896, 0.022571365346315556, 0.022350077450763443, 0.022350077450763443, 0.022350077450763443, 0.02146492586855499, 0.021243637973002875, 0.02080106218189865, 0.02212878955521133, 0.022571365346315556, 0.03186545695950432, 0.09670281035627351, 0.3113520690418234, 0.9128125691524673, 0.9464483292763886, 0.9406948439920336, 0.6879840672715203, 0.2940916131887586, 0.16331046691745962, 0.07855720292100023, 0.03075901748174375, 0.021686213764107103, 0.01925204691303386, 0.01947333480858597, 0.01814560743527329, 0.017703031644169063, 0.01681788006196061, 0.015711440584200043, 0.014383713210887364, 0.013055985837574684, 0.012170834255366232, 0.011728258464262006, 0.011728258464262006, 0.011728258464262006, 0.011728258464262006, 0.011285682673157778, 0.011064394777605666, 0.010843106882053552, 0.011064394777605666, 0.010843106882053552, 0.010843106882053552, 0.010843106882053552, 0.010843106882053552, 0.010621818986501438, 0.010621818986501438, 0.010400531090949326, 0.009957955299845098, 0.008851515822084531, 0.008851515822084531, 0.00863022792653242, 0.008187652135428191, 0.008187652135428191, 0.008187652135428191, 0.00929409161318876, 0.009515379508740872, 0.00929409161318876, 0.009072803717636645, 0.008851515822084531, 0.008851515822084531, 0.4596149590617393, 0.039389245408276166, 0.5047576897543704, 0.49745518920115067, 0.4631555653905731, 0.36977207346758134, 0.02943129010843107, 0.01792431953972118, 0.46492586855499, 0.45939367116618723, 0.44921442797079, 0.4279707899977871, 0.4312901084310688, 0.545032086744855, 0.539057313564948, 0.009736667404292985, 0.009072803717636645, 0.008851515822084531, 0.008408940030980305, 0.008851515822084531, 0.009736667404292985, 0.008408940030980305, 0.00796636423987608, 0.007302500553219739, 0.007523788448771852, 0.007302500553219739, 0.007081212657667626, 0.006638636866563399, 0.006638636866563399, 0.7238327063509626, 0.006638636866563399, 0.005753485284354946, 0.005974773179907059, 0.005753485284354946, 0.005310909493250719, 0.005753485284354946, 0.005753485284354946, 0.00929409161318876, 0.5381721619827395, 0.5025448107988493, 0.009736667404292985, 0.006638636866563399, 0.45319761009072806, 0.9356052223943351, 0.9294091613188759, 0.41867669838459837, 0.007523788448771852, 0.011506970568709892, 0.017703031644169063, 0.013719849524231024, 0.015711440584200043, 0.03761894224385926, 0.027882274839566276, 0.007302500553219739, 0.8698827174153574, 0.9462270413808365, 0.9479973445452534, 0.9347200708121266, 0.8512945341889798, 0.007081212657667626, 0.007523788448771852, 0.007302500553219739, 0.007523788448771852, 0.007523788448771852, 0.007523788448771852, 0.007745076344323965, 0.007745076344323965, 0.4978977649922549, 0.012613410046470458, 0.00863022792653242, 0.008851515822084531, 0.008408940030980305, 0.008408940030980305, 0.00863022792653242, 0.008851515822084531, 0.009072803717636645, 0.009072803717636645, 0.00929409161318876, 0.00929409161318876, 0.009515379508740872, 0.009515379508740872, 0.009736667404292985, 0.011285682673157778, 0.012613410046470458, 0.06107545917238327, 0.4029652578003983], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Occludin_ELL.gap.json b/pfam_gap_rates/Occludin_ELL.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c6c8fa1d0e2e4f965a88083be53ce6b853b4b7c1
--- /dev/null
+++ b/pfam_gap_rates/Occludin_ELL.gap.json
@@ -0,0 +1 @@
+{"family": "Occludin_ELL", "n_seqs": 220, "length": 104, "gap_rates": [0.21818181818181817, 0.09090909090909091, 0.05454545454545454, 0.045454545454545456, 0.04090909090909091, 0.031818181818181815, 0.031818181818181815, 0.031818181818181815, 0.031818181818181815, 0.031818181818181815, 0.031818181818181815, 0.031818181818181815, 0.031818181818181815, 0.02727272727272727, 0.02727272727272727, 0.02727272727272727, 0.02727272727272727, 0.02727272727272727, 0.02727272727272727, 0.022727272727272728, 0.022727272727272728, 0.022727272727272728, 0.01818181818181818, 0.01818181818181818, 0.01818181818181818, 0.01818181818181818, 0.01818181818181818, 0.01818181818181818, 0.01818181818181818, 0.01818181818181818, 0.01818181818181818, 0.01818181818181818, 0.01818181818181818, 0.022727272727272728, 0.01818181818181818, 0.01818181818181818, 0.01818181818181818, 0.01818181818181818, 0.01818181818181818, 0.01818181818181818, 0.01818181818181818, 0.01818181818181818, 0.01818181818181818, 0.022727272727272728, 0.022727272727272728, 0.022727272727272728, 0.022727272727272728, 0.022727272727272728, 0.04090909090909091, 0.04090909090909091, 0.03636363636363636, 0.02727272727272727, 0.03636363636363636, 0.8136363636363636, 0.6863636363636364, 0.031818181818181815, 0.04090909090909091, 0.05454545454545454, 0.06363636363636363, 0.06363636363636363, 0.07727272727272727, 0.07727272727272727, 0.07272727272727272, 0.2590909090909091, 0.08181818181818182, 0.08181818181818182, 0.07272727272727272, 0.06818181818181818, 0.06818181818181818, 0.06818181818181818, 0.08181818181818182, 0.22272727272727272, 0.21363636363636362, 0.7681818181818182, 0.08181818181818182, 0.08636363636363636, 0.09090909090909091, 0.09545454545454546, 0.09090909090909091, 0.09545454545454546, 0.09545454545454546, 0.09545454545454546, 0.09545454545454546, 0.09545454545454546, 0.09545454545454546, 0.09545454545454546, 0.09545454545454546, 0.09545454545454546, 0.09545454545454546, 0.09545454545454546, 0.09545454545454546, 0.1, 0.1, 0.11363636363636363, 0.11818181818181818, 0.11818181818181818, 0.11818181818181818, 0.11818181818181818, 0.12272727272727273, 0.12727272727272726, 0.14545454545454545, 0.15, 0.16363636363636364, 0.42727272727272725], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Omp28.gap.json b/pfam_gap_rates/Omp28.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..5a1a7dc60b3ded852bcc27780e6b3867732bdbae
--- /dev/null
+++ b/pfam_gap_rates/Omp28.gap.json
@@ -0,0 +1 @@
+{"family": "Omp28", "n_seqs": 112, "length": 223, "gap_rates": [0.8125, 0.7142857142857143, 0.6428571428571429, 0.6071428571428571, 0.5535714285714286, 0.45535714285714285, 0.4375, 0.39285714285714285, 0.35714285714285715, 0.9375, 0.32142857142857145, 0.20535714285714285, 0.15178571428571427, 0.14285714285714285, 0.14285714285714285, 0.14285714285714285, 0.14285714285714285, 0.14285714285714285, 0.14285714285714285, 0.875, 0.9285714285714286, 0.8571428571428571, 0.14285714285714285, 0.13392857142857142, 0.13392857142857142, 0.14285714285714285, 0.14285714285714285, 0.3482142857142857, 0.29464285714285715, 0.9375, 0.17857142857142858, 0.125, 0.10714285714285714, 0.09821428571428571, 0.09821428571428571, 0.09821428571428571, 0.10714285714285714, 0.09821428571428571, 0.14285714285714285, 0.09821428571428571, 0.07142857142857142, 0.6875, 0.7232142857142857, 0.875, 0.9017857142857143, 0.9464285714285714, 0.9196428571428571, 0.8928571428571429, 0.8214285714285714, 0.7053571428571429, 0.625, 0.0625, 0.05357142857142857, 0.05357142857142857, 0.05357142857142857, 0.05357142857142857, 0.044642857142857144, 0.044642857142857144, 0.044642857142857144, 0.044642857142857144, 0.044642857142857144, 0.026785714285714284, 0.026785714285714284, 0.026785714285714284, 0.026785714285714284, 0.026785714285714284, 0.026785714285714284, 0.026785714285714284, 0.017857142857142856, 0.017857142857142856, 0.4642857142857143, 0.9196428571428571, 0.375, 0.017857142857142856, 0.017857142857142856, 0.017857142857142856, 0.017857142857142856, 0.017857142857142856, 0.017857142857142856, 0.017857142857142856, 0.017857142857142856, 0.017857142857142856, 0.017857142857142856, 0.017857142857142856, 0.017857142857142856, 0.008928571428571428, 0.13392857142857142, 0.5803571428571429, 0.9196428571428571, 0.8660714285714286, 0.41964285714285715, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.008928571428571428, 0.0, 0.0, 0.0, 0.008928571428571428, 0.008928571428571428, 0.017857142857142856, 0.0, 0.008928571428571428, 0.7142857142857143, 0.75, 0.8303571428571429, 0.8392857142857143, 0.8392857142857143, 0.875, 0.9017857142857143, 0.9196428571428571, 0.9375, 0.9196428571428571, 0.8839285714285714, 0.8392857142857143, 0.8392857142857143, 0.8303571428571429, 0.7946428571428571, 0.7232142857142857, 0.6964285714285714, 0.5178571428571429, 0.39285714285714285, 0.30357142857142855, 0.22321428571428573, 0.09821428571428571, 0.05357142857142857, 0.044642857142857144, 0.0625, 0.9375, 0.9375, 0.16964285714285715, 0.13392857142857142, 0.05357142857142857, 0.026785714285714284, 0.0, 0.0, 0.008928571428571428, 0.008928571428571428, 0.017857142857142856, 0.0, 0.0, 0.008928571428571428, 0.9375, 0.7678571428571429, 0.008928571428571428, 0.017857142857142856, 0.008928571428571428, 0.008928571428571428, 0.9464285714285714, 0.9196428571428571, 0.0, 0.05357142857142857, 0.044642857142857144, 0.5446428571428571, 0.8482142857142857, 0.9464285714285714, 0.7767857142857143, 0.125, 0.026785714285714284, 0.017857142857142856, 0.03571428571428571, 0.026785714285714284, 0.017857142857142856, 0.0, 0.008928571428571428, 0.017857142857142856, 0.008928571428571428, 0.0, 0.008928571428571428, 0.008928571428571428, 0.0, 0.0, 0.017857142857142856, 0.017857142857142856, 0.0, 0.9285714285714286, 0.9464285714285714, 0.7410714285714286, 0.044642857142857144, 0.026785714285714284, 0.017857142857142856, 0.026785714285714284, 0.026785714285714284, 0.026785714285714284, 0.026785714285714284, 0.026785714285714284, 0.026785714285714284, 0.026785714285714284, 0.026785714285714284, 0.026785714285714284, 0.026785714285714284, 0.03571428571428571, 0.044642857142857144, 0.05357142857142857, 0.11607142857142858, 0.19642857142857142, 0.8214285714285714, 0.9017857142857143, 0.8660714285714286, 0.7767857142857143, 0.3392857142857143, 0.20535714285714285, 0.20535714285714285, 0.1875, 0.20535714285714285, 0.24107142857142858, 0.2767857142857143, 0.33035714285714285, 0.375, 0.4107142857142857, 0.5714285714285714, 0.7232142857142857, 0.8214285714285714], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Oxidored_q4.gap.json b/pfam_gap_rates/Oxidored_q4.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b56d9549deb44b8b0d1bebf0edaa476e76d3d005
--- /dev/null
+++ b/pfam_gap_rates/Oxidored_q4.gap.json
@@ -0,0 +1 @@
+{"family": "Oxidored_q4", "n_seqs": 1328, "length": 105, "gap_rates": [0.6875, 0.3072289156626506, 0.20105421686746988, 0.12349397590361445, 0.08810240963855422, 0.07756024096385543, 0.07078313253012049, 0.06551204819277108, 0.06325301204819277, 0.061746987951807226, 0.04593373493975904, 0.04743975903614458, 0.04593373493975904, 0.04216867469879518, 0.0338855421686747, 0.030120481927710843, 0.02786144578313253, 0.02710843373493976, 0.021837349397590362, 0.01882530120481928, 0.018072289156626505, 0.018072289156626505, 0.018072289156626505, 0.017319277108433735, 0.01581325301204819, 0.01581325301204819, 0.015060240963855422, 0.01430722891566265, 0.01430722891566265, 0.01430722891566265, 0.012801204819277108, 0.012048192771084338, 0.03162650602409638, 0.9201807228915663, 0.9179216867469879, 0.015060240963855422, 0.012048192771084338, 0.011295180722891566, 0.010542168674698794, 0.010542168674698794, 0.008283132530120483, 0.008283132530120483, 0.008283132530120483, 0.009789156626506024, 0.010542168674698794, 0.010542168674698794, 0.009789156626506024, 0.009789156626506024, 0.009789156626506024, 0.010542168674698794, 0.009789156626506024, 0.009036144578313253, 0.009036144578313253, 0.009789156626506024, 0.009789156626506024, 0.010542168674698794, 0.010542168674698794, 0.009789156626506024, 0.009036144578313253, 0.009036144578313253, 0.008283132530120483, 0.008283132530120483, 0.011295180722891566, 0.012048192771084338, 0.012801204819277108, 0.017319277108433735, 0.02108433734939759, 0.022590361445783132, 0.0338855421686747, 0.025602409638554216, 0.8772590361445783, 0.9239457831325302, 0.9412650602409639, 0.9164156626506024, 0.8569277108433735, 0.02108433734939759, 0.024849397590361446, 0.024096385542168676, 0.02108433734939759, 0.021837349397590362, 0.02108433734939759, 0.02108433734939759, 0.02108433734939759, 0.02108433734939759, 0.022590361445783132, 0.021837349397590362, 0.022590361445783132, 0.024096385542168676, 0.024096385542168676, 0.022590361445783132, 0.022590361445783132, 0.025602409638554216, 0.02635542168674699, 0.02710843373493976, 0.029367469879518073, 0.030873493975903613, 0.03162650602409638, 0.03614457831325301, 0.045180722891566265, 0.04743975903614458, 0.04743975903614458, 0.05271084337349398, 0.0677710843373494, 0.08132530120481928, 0.11897590361445783], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Oxygenase-NA.gap.json b/pfam_gap_rates/Oxygenase-NA.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..1ece45571a0c338968801e98ab95de661810d467
--- /dev/null
+++ b/pfam_gap_rates/Oxygenase-NA.gap.json
@@ -0,0 +1 @@
+{"family": "Oxygenase-NA", "n_seqs": 143, "length": 172, "gap_rates": [0.08391608391608392, 0.08391608391608392, 0.08391608391608392, 0.08391608391608392, 0.07692307692307693, 0.07692307692307693, 0.07692307692307693, 0.07692307692307693, 0.07692307692307693, 0.07692307692307693, 0.07692307692307693, 0.07692307692307693, 0.07692307692307693, 0.06993006993006994, 0.06993006993006994, 0.06993006993006994, 0.06993006993006994, 0.06993006993006994, 0.06993006993006994, 0.06993006993006994, 0.06993006993006994, 0.06993006993006994, 0.06993006993006994, 0.06993006993006994, 0.06993006993006994, 0.06993006993006994, 0.06993006993006994, 0.06993006993006994, 0.06993006993006994, 0.06993006993006994, 0.06993006993006994, 0.06993006993006994, 0.06993006993006994, 0.06993006993006994, 0.07692307692307693, 0.07692307692307693, 0.07692307692307693, 0.09090909090909091, 0.07692307692307693, 0.07692307692307693, 0.07692307692307693, 0.07692307692307693, 0.07692307692307693, 0.07692307692307693, 0.07692307692307693, 0.06993006993006994, 0.09090909090909091, 0.09090909090909091, 0.06993006993006994, 0.06993006993006994, 0.04895104895104895, 0.04195804195804196, 0.04195804195804196, 0.04195804195804196, 0.04195804195804196, 0.04195804195804196, 0.04195804195804196, 0.04195804195804196, 0.03496503496503497, 0.03496503496503497, 0.027972027972027972, 0.027972027972027972, 0.027972027972027972, 0.027972027972027972, 0.027972027972027972, 0.027972027972027972, 0.027972027972027972, 0.027972027972027972, 0.027972027972027972, 0.027972027972027972, 0.027972027972027972, 0.027972027972027972, 0.027972027972027972, 0.027972027972027972, 0.03496503496503497, 0.03496503496503497, 0.04195804195804196, 0.04195804195804196, 0.04195804195804196, 0.04195804195804196, 0.04895104895104895, 0.04195804195804196, 0.04195804195804196, 0.06993006993006994, 0.07692307692307693, 0.06993006993006994, 0.06993006993006994, 0.04895104895104895, 0.04895104895104895, 0.04195804195804196, 0.04195804195804196, 0.04195804195804196, 0.04195804195804196, 0.04195804195804196, 0.04195804195804196, 0.04195804195804196, 0.055944055944055944, 0.055944055944055944, 0.04195804195804196, 0.04195804195804196, 0.04195804195804196, 0.04195804195804196, 0.04195804195804196, 0.04195804195804196, 0.04195804195804196, 0.04195804195804196, 0.04195804195804196, 0.04195804195804196, 0.04195804195804196, 0.04195804195804196, 0.04195804195804196, 0.04195804195804196, 0.04195804195804196, 0.04195804195804196, 0.03496503496503497, 0.03496503496503497, 0.055944055944055944, 0.03496503496503497, 0.03496503496503497, 0.03496503496503497, 0.03496503496503497, 0.03496503496503497, 0.055944055944055944, 0.03496503496503497, 0.03496503496503497, 0.03496503496503497, 0.04195804195804196, 0.04195804195804196, 0.04895104895104895, 0.04895104895104895, 0.04895104895104895, 0.04895104895104895, 0.06993006993006994, 0.07692307692307693, 0.07692307692307693, 0.07692307692307693, 0.07692307692307693, 0.09090909090909091, 0.09090909090909091, 0.06993006993006994, 0.06993006993006994, 0.06993006993006994, 0.06993006993006994, 0.06993006993006994, 0.06993006993006994, 0.07692307692307693, 0.07692307692307693, 0.07692307692307693, 0.06993006993006994, 0.06293706293706294, 0.06293706293706294, 0.06293706293706294, 0.06293706293706294, 0.06293706293706294, 0.06293706293706294, 0.06293706293706294, 0.06293706293706294, 0.06293706293706294, 0.06293706293706294, 0.06293706293706294, 0.06293706293706294, 0.08391608391608392, 0.08391608391608392, 0.09090909090909091, 0.09090909090909091, 0.09090909090909091, 0.09090909090909091, 0.09090909090909091, 0.0979020979020979, 0.0979020979020979, 0.0979020979020979, 0.13286713286713286], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/P12.gap.json b/pfam_gap_rates/P12.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f890772e81dbd8477a7cbb04075f66f1fc07aa92
--- /dev/null
+++ b/pfam_gap_rates/P12.gap.json
@@ -0,0 +1 @@
+{"family": "P12", "n_seqs": 356, "length": 55, "gap_rates": [0.5056179775280899, 0.1544943820224719, 0.08146067415730338, 0.03932584269662921, 0.014044943820224719, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0028089887640449437, 0.0028089887640449437, 0.0028089887640449437, 0.0028089887640449437, 0.0028089887640449437, 0.9466292134831461, 0.0, 0.0028089887640449437, 0.0, 0.0, 0.0, 0.0028089887640449437, 0.0056179775280898875, 0.9466292134831461, 0.9129213483146067, 0.05337078651685393, 0.042134831460674156, 0.025280898876404494, 0.011235955056179775, 0.5730337078651685, 0.9382022471910112, 0.800561797752809, 0.4438202247191011, 0.1797752808988764, 0.12078651685393259, 0.1348314606741573, 0.34269662921348315, 0.12078651685393259, 0.014044943820224719, 0.07584269662921349, 0.9241573033707865, 0.025280898876404494, 0.02247191011235955, 0.03932584269662921, 0.10955056179775281, 0.3146067415730337, 0.5393258426966292, 0.5702247191011236, 0.702247191011236, 0.9129213483146067, 0.9269662921348315, 0.8174157303370787, 0.21910112359550563, 0.601123595505618], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/P16-Arc.gap.json b/pfam_gap_rates/P16-Arc.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..4019c6ec8a657b8b97513ef1aafd7aba0595a06c
--- /dev/null
+++ b/pfam_gap_rates/P16-Arc.gap.json
@@ -0,0 +1 @@
+{"family": "P16-Arc", "n_seqs": 321, "length": 195, "gap_rates": [0.3707165109034268, 0.3426791277258567, 0.3426791277258567, 0.3426791277258567, 0.3426791277258567, 0.3426791277258567, 0.3426791277258567, 0.3426791277258567, 0.3364485981308411, 0.3302180685358255, 0.32710280373831774, 0.32710280373831774, 0.3302180685358255, 0.32710280373831774, 0.8099688473520249, 0.822429906542056, 0.7757009345794392, 0.32398753894080995, 0.32398753894080995, 0.32398753894080995, 0.32398753894080995, 0.32398753894080995, 0.5669781931464174, 0.573208722741433, 0.5607476635514018, 0.7912772585669782, 0.8535825545171339, 0.8161993769470405, 0.6012461059190031, 0.48286604361370716, 0.4423676012461059, 0.29283489096573206, 0.24610591900311526, 0.21806853582554517, 0.1838006230529595, 0.17445482866043613, 0.17133956386292834, 0.17133956386292834, 0.17133956386292834, 0.16822429906542055, 0.16822429906542055, 0.16822429906542055, 0.16822429906542055, 0.16510903426791276, 0.16510903426791276, 0.1588785046728972, 0.16199376947040497, 0.1588785046728972, 0.1526479750778816, 0.14953271028037382, 0.1557632398753894, 0.13395638629283488, 0.13395638629283488, 0.12461059190031153, 0.11214953271028037, 0.11526479750778816, 0.11526479750778816, 0.11526479750778816, 0.11214953271028037, 0.11214953271028037, 0.11214953271028037, 0.11214953271028037, 0.11214953271028037, 0.10903426791277258, 0.11214953271028037, 0.11214953271028037, 0.11526479750778816, 0.11526479750778816, 0.11526479750778816, 0.11214953271028037, 0.367601246105919, 0.1277258566978193, 0.10903426791277258, 0.09345794392523364, 0.09345794392523364, 0.08411214953271028, 0.06542056074766354, 0.06230529595015576, 0.06230529595015576, 0.059190031152647975, 0.059190031152647975, 0.056074766355140186, 0.056074766355140186, 0.056074766355140186, 0.0529595015576324, 0.0529595015576324, 0.04984423676012461, 0.04361370716510903, 0.04672897196261682, 0.04984423676012461, 0.1588785046728972, 0.14641744548286603, 0.037383177570093455, 0.04984423676012461, 0.03426791277258567, 0.03426791277258567, 0.03426791277258567, 0.03115264797507788, 0.028037383177570093, 0.8037383177570093, 0.8068535825545171, 0.9439252336448598, 0.8037383177570093, 0.8006230529595015, 0.028037383177570093, 0.03115264797507788, 0.028037383177570093, 0.8411214953271028, 0.028037383177570093, 0.028037383177570093, 0.028037383177570093, 0.028037383177570093, 0.028037383177570093, 0.028037383177570093, 0.03115264797507788, 0.03115264797507788, 0.03426791277258567, 0.03426791277258567, 0.037383177570093455, 0.04361370716510903, 0.0529595015576324, 0.0529595015576324, 0.056074766355140186, 0.059190031152647975, 0.0778816199376947, 0.102803738317757, 0.1059190031152648, 0.8660436137071651, 0.7414330218068536, 0.08722741433021806, 0.10903426791277258, 0.09034267912772585, 0.059190031152647975, 0.7975077881619937, 0.7975077881619937, 0.7975077881619937, 0.8130841121495327, 0.822429906542056, 0.822429906542056, 0.822429906542056, 0.822429906542056, 0.8255451713395638, 0.8255451713395638, 0.8286604361370716, 0.8286604361370716, 0.8286604361370716, 0.8598130841121495, 0.8691588785046729, 0.9034267912772586, 0.9283489096573209, 0.881619937694704, 0.8660436137071651, 0.8348909657320872, 0.8286604361370716, 0.8286604361370716, 0.8286604361370716, 0.8255451713395638, 0.8255451713395638, 0.822429906542056, 0.822429906542056, 0.822429906542056, 0.8193146417445483, 0.8006230529595015, 0.7975077881619937, 0.7975077881619937, 0.7975077881619937, 0.06853582554517133, 0.06853582554517133, 0.06853582554517133, 0.06853582554517133, 0.06853582554517133, 0.06542056074766354, 0.06542056074766354, 0.06542056074766354, 0.06853582554517133, 0.07476635514018691, 0.09345794392523364, 0.1059190031152648, 0.11838006230529595, 0.12461059190031153, 0.12461059190031153, 0.12149532710280374, 0.12149532710280374, 0.12461059190031153, 0.12461059190031153, 0.1277258566978193, 0.13395638629283488, 0.13707165109034267, 0.13707165109034267, 0.14018691588785046, 0.14330218068535824, 0.1588785046728972, 0.2866043613707165, 0.3395638629283489, 0.4797507788161994], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PA.gap.json b/pfam_gap_rates/PA.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..0ea9067b7b3d1f42f4c893ddd8badc5c1739495f
--- /dev/null
+++ b/pfam_gap_rates/PA.gap.json
@@ -0,0 +1 @@
+{"family": "PA", "n_seqs": 3676, "length": 142, "gap_rates": [0.8484766050054406, 0.7119151251360174, 0.5799782372143635, 0.47143634385201305, 0.4363438520130577, 0.42219804134929273, 0.7127312295973884, 0.8220892274211099, 0.8854733405875952, 0.9360718171926007, 0.9153971708378672, 0.8604461371055495, 0.7614254624591947, 0.7081066376496191, 0.6806311207834603, 0.8571817192600653, 0.690152339499456, 0.6403699673558215, 0.6444504896626768, 0.9396082698585418, 0.9249183895538629, 0.39689880304679, 0.411860718171926, 0.3751360174102285, 0.3715995647442873, 0.3705114254624592, 0.5019042437431991, 0.4896626768226333, 0.38166485310119697, 0.4099564744287269, 0.46545157780195867, 0.3555495103373232, 0.5242110990206746, 0.5943960826985855, 0.7867247007616975, 0.940424374319913, 0.6292165397170838, 0.5492383025027203, 0.5062568008705114, 0.24156692056583243, 0.19504896626768226, 0.08949945593035909, 0.07100108813928183, 0.05767138193688792, 0.041349292709466814, 0.024483133841131665, 0.008705114254624592, 0.007616974972796518, 0.007072905331882481, 0.00544069640914037, 0.190968443960827, 0.09521218715995647, 0.14173014145810664, 0.7823721436343852, 0.9360718171926007, 0.16240478781284004, 0.11262241566920565, 0.03373231773667029, 0.0019042437431991295, 0.8340587595212187, 0.8596300326441785, 0.8819368879216539, 0.9020674646354734, 0.9099564744287268, 0.9249183895538629, 0.9306311207834603, 0.94069640914037, 0.9469532100108814, 0.9426006528835691, 0.9336235038084875, 0.9279107725788901, 0.9153971708378672, 0.9066920565832427, 0.8947225244831338, 0.8631664853101197, 0.8509249183895539, 0.823449401523395, 0.001088139281828074, 0.000544069640914037, 0.0002720348204570185, 0.0002720348204570185, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0002720348204570185, 0.0002720348204570185, 0.0002720348204570185, 0.0008161044613710555, 0.0013601741022850925, 0.4178454842219804, 0.41893362350380847, 0.8903699673558215, 0.9385201305767138, 0.9221980413492927, 0.8639825897714908, 0.05903155603917301, 0.25, 0.27393906420021763, 0.3400435255712731, 0.7867247007616975, 0.9012513601741022, 0.940152339499456, 0.8297062023939065, 0.6825353645266594, 0.5084330794341676, 0.5097932535364527, 0.47905331882480956, 0.4309031556039173, 0.39173014145810664, 0.48340587595212187, 0.4094124047878128, 0.3628944504896627, 0.3147442872687704, 0.24809575625680086, 0.24129488574537541, 0.235038084874864, 0.20647442872687705, 0.1629488574537541, 0.20212187159956474, 0.18906420021762785, 0.15995647442872687, 0.16213275299238303, 0.1648531011969532, 0.16594124047878128, 0.16974972796517954, 0.17301414581066377, 0.1779107725788901, 0.18117519042437433, 0.1898803046789989, 0.2089227421109902, 0.2279651795429815, 0.26251360174102284, 0.2916213275299238, 0.34657236126224156, 0.4349836779107726, 0.5894994559303591], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PA28_alpha.gap.json b/pfam_gap_rates/PA28_alpha.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..5cdbe2a0f3f2bda0a2704644e478265b9cdeef85
--- /dev/null
+++ b/pfam_gap_rates/PA28_alpha.gap.json
@@ -0,0 +1 @@
+{"family": "PA28_alpha", "n_seqs": 142, "length": 62, "gap_rates": [0.5774647887323944, 0.49295774647887325, 0.38028169014084506, 0.3028169014084507, 0.21830985915492956, 0.15492957746478872, 0.11267605633802817, 0.11267605633802817, 0.1056338028169014, 0.09859154929577464, 0.09859154929577464, 0.09154929577464789, 0.09154929577464789, 0.08450704225352113, 0.07746478873239436, 0.07746478873239436, 0.06338028169014084, 0.06338028169014084, 0.06338028169014084, 0.06338028169014084, 0.06338028169014084, 0.06338028169014084, 0.06338028169014084, 0.06338028169014084, 0.06338028169014084, 0.06338028169014084, 0.06338028169014084, 0.06338028169014084, 0.06338028169014084, 0.06338028169014084, 0.056338028169014086, 0.06338028169014084, 0.06338028169014084, 0.06338028169014084, 0.07042253521126761, 0.06338028169014084, 0.035211267605633804, 0.035211267605633804, 0.09154929577464789, 0.09859154929577464, 0.06338028169014084, 0.07042253521126761, 0.09154929577464789, 0.09859154929577464, 0.13380281690140844, 0.176056338028169, 0.14084507042253522, 0.15492957746478872, 0.15492957746478872, 0.16901408450704225, 0.19014084507042253, 0.21830985915492956, 0.9436619718309859, 0.9436619718309859, 0.23943661971830985, 0.2605633802816901, 0.2605633802816901, 0.2887323943661972, 0.31690140845070425, 0.31690140845070425, 0.43661971830985913, 0.45774647887323944], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PAD_porph.gap.json b/pfam_gap_rates/PAD_porph.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b695537bd491741fe2dafdd879b508a6a0c4787b
--- /dev/null
+++ b/pfam_gap_rates/PAD_porph.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/PAF-AH_p_II.gap.json b/pfam_gap_rates/PAF-AH_p_II.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e4aa765aac3f317e08e6f19a381a41da41fa551f
--- /dev/null
+++ b/pfam_gap_rates/PAF-AH_p_II.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/PALP.gap.json b/pfam_gap_rates/PALP.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ff6ca3c2f75a21ee93d270ac1a562c7a9a2fedc4
--- /dev/null
+++ b/pfam_gap_rates/PALP.gap.json
@@ -0,0 +1 @@
+{"family": "PALP", "n_seqs": 5000, "length": 399, "gap_rates": [0.7712, 0.5652, 0.3636, 0.2632, 0.2218, 0.1914, 0.1764, 0.1706, 0.1672, 0.1704, 0.1664, 0.164, 0.1628, 0.165, 0.1794, 0.1844, 0.2252, 0.195, 0.1746, 0.1578, 0.156, 0.134, 0.8546, 0.6778, 0.1028, 0.0926, 0.0902, 0.09, 0.081, 0.0696, 0.0564, 0.0526, 0.0516, 0.9412, 0.048, 0.938, 0.0472, 0.0446, 0.043, 0.041, 0.0394, 0.0388, 0.0386, 0.0388, 0.0386, 0.0388, 0.9006, 0.0488, 0.047, 0.047, 0.0464, 0.0374, 0.9018, 0.9346, 0.922, 0.8012, 0.0414, 0.0664, 0.061, 0.0456, 0.5934, 0.8946, 0.9366, 0.6514, 0.5736, 0.2876, 0.0474, 0.0392, 0.0358, 0.0344, 0.0344, 0.0338, 0.0336, 0.0332, 0.0334, 0.0332, 0.033, 0.0332, 0.0334, 0.0334, 0.0328, 0.0328, 0.0334, 0.0332, 0.0322, 0.0324, 0.0328, 0.033, 0.033, 0.032, 0.9222, 0.0318, 0.0332, 0.0328, 0.0328, 0.0328, 0.0324, 0.0322, 0.0308, 0.031, 0.0312, 0.0318, 0.0316, 0.0316, 0.8506, 0.8544, 0.8128, 0.0412, 0.9274, 0.8794, 0.031, 0.0302, 0.0306, 0.0304, 0.03, 0.0298, 0.0292, 0.0298, 0.0304, 0.0302, 0.0312, 0.03, 0.0302, 0.0302, 0.0304, 0.0302, 0.6668, 0.8878, 0.9344, 0.9442, 0.9028, 0.8448, 0.6464, 0.0488, 0.0528, 0.054, 0.8688, 0.8474, 0.0408, 0.0362, 0.034, 0.034, 0.0342, 0.0356, 0.0384, 0.948, 0.911, 0.0616, 0.0582, 0.0418, 0.0386, 0.0382, 0.038, 0.034, 0.797, 0.8466, 0.9124, 0.9462, 0.859, 0.8384, 0.7494, 0.4348, 0.0568, 0.042, 0.0382, 0.0382, 0.0386, 0.0376, 0.036, 0.0376, 0.0394, 0.141, 0.8338, 0.9442, 0.91, 0.7714, 0.0572, 0.0388, 0.0332, 0.9122, 0.9342, 0.9076, 0.0328, 0.0318, 0.032, 0.0318, 0.5662, 0.031, 0.0316, 0.0324, 0.0318, 0.0316, 0.031, 0.0294, 0.0296, 0.0486, 0.82, 0.8928, 0.8426, 0.8122, 0.042, 0.0466, 0.0468, 0.1472, 0.7826, 0.8694, 0.9488, 0.8098, 0.6922, 0.0686, 0.0374, 0.034, 0.0368, 0.0722, 0.0314, 0.03, 0.03, 0.0304, 0.0304, 0.0304, 0.0306, 0.0304, 0.0306, 0.0306, 0.0304, 0.033, 0.0312, 0.033, 0.0308, 0.0312, 0.0318, 0.0322, 0.0322, 0.0398, 0.855, 0.8868, 0.9396, 0.8742, 0.8128, 0.1354, 0.1156, 0.1106, 0.0886, 0.9012, 0.9454, 0.8616, 0.0492, 0.0356, 0.0344, 0.0342, 0.0362, 0.0342, 0.0634, 0.0432, 0.042, 0.9042, 0.8854, 0.115, 0.064, 0.0546, 0.0502, 0.0504, 0.045, 0.045, 0.0468, 0.0494, 0.895, 0.9348, 0.8908, 0.4226, 0.3912, 0.393, 0.3852, 0.3742, 0.3914, 0.3478, 0.3394, 0.3366, 0.216, 0.1318, 0.7046, 0.749, 0.7546, 0.7708, 0.7884, 0.7978, 0.8074, 0.8592, 0.8674, 0.8826, 0.9152, 0.9306, 0.9412, 0.946, 0.948, 0.9466, 0.9432, 0.9398, 0.9184, 0.8996, 0.8748, 0.8664, 0.8078, 0.799, 0.7958, 0.7774, 0.7666, 0.752, 0.7308, 0.664, 0.0904, 0.091, 0.0876, 0.0792, 0.0732, 0.0594, 0.06, 0.0606, 0.0532, 0.052, 0.836, 0.9386, 0.618, 0.1772, 0.119, 0.1106, 0.0666, 0.0488, 0.0494, 0.0542, 0.0672, 0.0668, 0.0662, 0.9326, 0.1146, 0.1362, 0.144, 0.1438, 0.0996, 0.9458, 0.203, 0.1602, 0.15, 0.145, 0.0546, 0.056, 0.0562, 0.0568, 0.0576, 0.0578, 0.0576, 0.0578, 0.058, 0.0582, 0.0584, 0.059, 0.0588, 0.06, 0.1134, 0.0622, 0.0624, 0.063, 0.0658, 0.0648, 0.0648, 0.0656, 0.066, 0.9308, 0.0672, 0.067, 0.0674, 0.0674, 0.0678, 0.0682, 0.0692, 0.07, 0.0714, 0.8998, 0.6084, 0.5684, 0.1824, 0.1638, 0.1264, 0.1282, 0.1304, 0.1388, 0.1452, 0.1512, 0.1572, 0.1648, 0.4628, 0.1918, 0.1764, 0.1778, 0.187, 0.2064, 0.2284, 0.276, 0.3846], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PARP_reg.gap.json b/pfam_gap_rates/PARP_reg.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..2413a5756056ad22bf5b5ebdca868202eef64189
--- /dev/null
+++ b/pfam_gap_rates/PARP_reg.gap.json
@@ -0,0 +1 @@
+{"family": "PARP_reg", "n_seqs": 547, "length": 167, "gap_rates": [0.2687385740402194, 0.20109689213893966, 0.1773308957952468, 0.16453382084095064, 0.15173674588665448, 0.14076782449725778, 0.13711151736745886, 0.12797074954296161, 0.12797074954296161, 0.12431444241316271, 0.12431444241316271, 0.12431444241316271, 0.1206581352833638, 0.11882998171846434, 0.1170018281535649, 0.11882998171846434, 0.11882998171846434, 0.1170018281535649, 0.11517367458866545, 0.10968921389396709, 0.10968921389396709, 0.10968921389396709, 0.11151736745886655, 0.10968921389396709, 0.11151736745886655, 0.113345521023766, 0.10968921389396709, 0.10054844606946983, 0.09689213893967093, 0.09323583180987204, 0.09506398537477148, 0.08409506398537477, 0.07495429616087751, 0.0603290676416819, 0.0603290676416819, 0.05850091407678245, 0.054844606946983544, 0.05301645338208409, 0.054844606946983544, 0.054844606946983544, 0.051188299817184646, 0.051188299817184646, 0.051188299817184646, 0.04936014625228519, 0.04753199268738574, 0.04753199268738574, 0.04753199268738574, 0.04570383912248629, 0.04570383912248629, 0.04570383912248629, 0.043875685557586835, 0.043875685557586835, 0.04570383912248629, 0.04204753199268738, 0.04021937842778794, 0.04021937842778794, 0.043875685557586835, 0.043875685557586835, 0.04936014625228519, 0.04936014625228519, 0.04936014625228519, 0.04753199268738574, 0.08957952468007313, 0.36745886654478976, 0.4954296160877514, 0.5502742230347349, 0.7020109689213894, 0.7404021937842779, 0.8592321755027422, 0.8720292504570384, 0.8811700182815356, 0.9177330895795247, 0.9378427787934186, 0.9451553930530164, 0.946983546617916, 0.946983546617916, 0.9488117001828154, 0.946983546617916, 0.946983546617916, 0.946983546617916, 0.943327239488117, 0.9305301645338209, 0.9085923217550275, 0.8720292504570384, 0.8628884826325411, 0.8519195612431444, 0.720292504570384, 0.6654478976234004, 0.5319926873857403, 0.4606946983546618, 0.10786106032906764, 0.062157221206581355, 0.04753199268738574, 0.04936014625228519, 0.04753199268738574, 0.04753199268738574, 0.04570383912248629, 0.043875685557586835, 0.04204753199268738, 0.04204753199268738, 0.04204753199268738, 0.04204753199268738, 0.04204753199268738, 0.04204753199268738, 0.043875685557586835, 0.043875685557586835, 0.043875685557586835, 0.1846435100548446, 0.17184643510054845, 0.1773308957952468, 0.14990859232175502, 0.03656307129798903, 0.04021937842778794, 0.9488117001828154, 0.8775137111517367, 0.03656307129798903, 0.9250457038391224, 0.9122486288848263, 0.03290676416819013, 0.03290676416819013, 0.03290676416819013, 0.03290676416819013, 0.03473491773308958, 0.03473491773308958, 0.03290676416819013, 0.03656307129798903, 0.03290676416819013, 0.03290676416819013, 0.03290676416819013, 0.03290676416819013, 0.03290676416819013, 0.03656307129798903, 0.038391224862888484, 0.038391224862888484, 0.04204753199268738, 0.06581352833638025, 0.06946983546617916, 0.0712979890310786, 0.07312614259597806, 0.07312614259597806, 0.08226691042047532, 0.08409506398537477, 0.08409506398537477, 0.08592321755027423, 0.09140767824497258, 0.09506398537477148, 0.09872029250457039, 0.09872029250457039, 0.10054844606946983, 0.10603290676416818, 0.11151736745886655, 0.11517367458866545, 0.1206581352833638, 0.13345521023765997, 0.21572212065813529, 0.44789762340036565, 0.8336380255941499, 0.903107861060329, 0.8738574040219378, 0.6563071297989032, 0.19744058500914077, 0.15539305301645337, 0.16087751371115175, 0.1736745886654479, 0.1846435100548446, 0.19378427787934185, 0.21937842778793418], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PBC.gap.json b/pfam_gap_rates/PBC.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..49b4443b35e0cb002c540fa9a0ba28aa81598dbc
--- /dev/null
+++ b/pfam_gap_rates/PBC.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/PBP5_C.gap.json b/pfam_gap_rates/PBP5_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..5818ff7fa39b2779be8c33e48d77a521c543580a
--- /dev/null
+++ b/pfam_gap_rates/PBP5_C.gap.json
@@ -0,0 +1 @@
+{"family": "PBP5_C", "n_seqs": 1587, "length": 110, "gap_rates": [0.36609955891619406, 0.3314429741650914, 0.297416509136736, 0.2577189666036547, 0.23125393824826718, 0.20982986767485823, 0.19659735349716445, 0.18777567737870196, 0.17832388153749212, 0.1657214870825457, 0.15311909262759923, 0.14996849401386264, 0.13862633900441085, 0.8872085696282294, 0.9136735979836169, 0.8601134215500945, 0.13169502205419029, 0.10586011342155009, 0.09199747952110901, 0.08065532451165722, 0.08254568367989919, 0.07939508506616257, 0.07309388783868935, 0.07057340894770006, 0.07120352867044738, 0.07246376811594203, 0.06931316950220542, 0.1001890359168242, 0.07498424700693132, 0.0630119722747322, 0.056080655324511654, 0.05229993698802773, 0.04914933837429111, 0.04725897920604915, 0.045368620037807186, 0.045368620037807186, 0.043478260869565216, 0.04977945809703844, 0.04473850031505986, 0.04095778197857593, 0.05356017643352237, 0.9357277882797732, 0.04977945809703844, 0.039067422810333964, 0.03465658475110271, 0.03213610586011342, 0.039067422810333964, 0.034026465028355386, 0.023944549464398234, 0.013232514177693762, 0.00945179584120983, 0.010081915563957152, 0.010081915563957152, 0.008191556395715185, 0.00945179584120983, 0.00945179584120983, 0.8153749212350346, 0.0630119722747322, 0.011972274732199117, 0.00945179584120983, 0.017643352236925015, 0.02520478890989288, 0.9287964713295526, 0.9363579080025205, 0.9458097038437303, 0.9395085066162571, 0.9325771896660365, 0.9187145557655955, 0.005040957781978576, 0.002520478890989288, 0.002520478890989288, 0.002520478890989288, 0.002520478890989288, 0.002520478890989288, 0.002520478890989288, 0.002520478890989288, 0.002520478890989288, 0.002520478890989288, 0.002520478890989288, 0.00315059861373661, 0.003780718336483932, 0.00315059861373661, 0.9243856332703214, 0.005040957781978576, 0.01260239445494644, 0.010712035286704474, 0.010712035286704474, 0.015122873345935728, 0.010712035286704474, 0.015122873345935728, 0.01260239445494644, 0.013862633900441084, 0.9193446754883428, 0.9269061121613107, 0.9376181474480151, 0.941398865784499, 0.9319470699432892, 0.9224952741020794, 0.9130434782608695, 0.024574669187145556, 0.020163831127914304, 0.022684310018903593, 0.024574669187145556, 0.027725267800882167, 0.035916824196597356, 0.04725897920604915, 0.06931316950220542, 0.10775047258979206, 0.2205419029615627, 0.5248897290485193], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PBP_dimer.gap.json b/pfam_gap_rates/PBP_dimer.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ed69b5d551c98a8b770889d748b1e5d6d41d1dc1
--- /dev/null
+++ b/pfam_gap_rates/PBP_dimer.gap.json
@@ -0,0 +1 @@
+{"family": "PBP_dimer", "n_seqs": 4564, "length": 271, "gap_rates": [0.544259421560035, 0.23137598597721298, 0.1273006134969325, 0.07800175284837861, 0.058720420683610865, 0.05806310254163015, 0.05718667835232252, 0.05565293602103418, 0.05543382997370727, 0.05565293602103418, 0.05499561787905346, 0.054776511831726556, 0.053023663453111304, 0.0528045574057844, 0.05236634531113059, 0.051928133216476775, 0.04995617879053462, 0.04973707274320771, 0.04995617879053462, 0.0492988606485539, 0.04842243645924627, 0.04864154250657318, 0.049079754601226995, 0.04842243645924627, 0.04754601226993865, 0.04820333041191937, 0.04864154250657318, 0.0492988606485539, 0.049079754601226995, 0.04864154250657318, 0.04864154250657318, 0.04754601226993865, 0.04688869412795793, 0.04645048203330412, 0.047765118317265556, 0.050175284837861524, 0.07449605609114812, 0.09969325153374232, 0.49605609114811566, 0.5409728308501315, 0.7480280455740579, 0.845749342681858, 0.8915425065731815, 0.9246275197195443, 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\ No newline at end of file
diff --git a/pfam_gap_rates/PCO_ADO.gap.json b/pfam_gap_rates/PCO_ADO.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ce354b55d634a8543c6c25d0b9712b53a1fec2b7
--- /dev/null
+++ b/pfam_gap_rates/PCO_ADO.gap.json
@@ -0,0 +1 @@
+{"family": "PCO_ADO", "n_seqs": 342, "length": 263, "gap_rates": [0.4853801169590643, 0.39766081871345027, 0.3654970760233918, 0.3508771929824561, 0.32748538011695905, 0.31871345029239767, 0.31871345029239767, 0.31871345029239767, 0.3157894736842105, 0.3157894736842105, 0.3157894736842105, 0.3128654970760234, 0.30994152046783624, 0.30994152046783624, 0.30701754385964913, 0.30701754385964913, 0.30409356725146197, 0.30409356725146197, 0.3128654970760234, 0.3888888888888889, 0.783625730994152, 0.7953216374269005, 0.8128654970760234, 0.8245614035087719, 0.8801169590643275, 0.9122807017543859, 0.8918128654970761, 0.8654970760233918, 0.8187134502923976, 0.7953216374269005, 0.7923976608187134, 0.783625730994152, 0.6111111111111112, 0.868421052631579, 0.9093567251461988, 0.9415204678362573, 0.9269005847953217, 0.8918128654970761, 0.8538011695906432, 0.5935672514619883, 0.5058479532163743, 0.35964912280701755, 0.2894736842105263, 0.2631578947368421, 0.24853801169590642, 0.2222222222222222, 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\ No newline at end of file
diff --git a/pfam_gap_rates/PCP_red.gap.json b/pfam_gap_rates/PCP_red.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..28e998d2b45b7e1f0a8cc10ef210064c0e661ec4
--- /dev/null
+++ b/pfam_gap_rates/PCP_red.gap.json
@@ -0,0 +1 @@
+{"family": "PCP_red", "n_seqs": 336, "length": 53, "gap_rates": [0.01488095238095238, 0.01488095238095238, 0.01488095238095238, 0.01488095238095238, 0.01488095238095238, 0.011904761904761904, 0.008928571428571428, 0.008928571428571428, 0.008928571428571428, 0.008928571428571428, 0.002976190476190476, 0.002976190476190476, 0.8035714285714286, 0.8065476190476191, 0.8035714285714286, 0.8035714285714286, 0.002976190476190476, 0.002976190476190476, 0.0, 0.0, 0.0, 0.8035714285714286, 0.8035714285714286, 0.8035714285714286, 0.8035714285714286, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.002976190476190476, 0.002976190476190476, 0.002976190476190476, 0.002976190476190476, 0.002976190476190476, 0.002976190476190476, 0.011904761904761904, 0.008928571428571428, 0.008928571428571428, 0.008928571428571428, 0.008928571428571428, 0.008928571428571428, 0.011904761904761904, 0.026785714285714284, 0.03273809523809524, 0.05654761904761905, 0.13690476190476192, 0.2648809523809524, 0.35119047619047616], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PELOTA_1.gap.json b/pfam_gap_rates/PELOTA_1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..398bbf9fed4d0e30753e5ef03cc8fe6c5b6ed82f
--- /dev/null
+++ b/pfam_gap_rates/PELOTA_1.gap.json
@@ -0,0 +1 @@
+{"family": "PELOTA_1", "n_seqs": 132, "length": 87, "gap_rates": [0.553030303030303, 0.4166666666666667, 0.13636363636363635, 0.09090909090909091, 0.045454545454545456, 0.030303030303030304, 0.022727272727272728, 0.022727272727272728, 0.022727272727272728, 0.022727272727272728, 0.015151515151515152, 0.015151515151515152, 0.015151515151515152, 0.015151515151515152, 0.015151515151515152, 0.015151515151515152, 0.015151515151515152, 0.007575757575757576, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.946969696969697, 0.9090909090909091, 0.0, 0.007575757575757576, 0.0, 0.946969696969697, 0.9318181818181818, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.007575757575757576, 0.007575757575757576, 0.007575757575757576, 0.007575757575757576, 0.007575757575757576, 0.007575757575757576, 0.007575757575757576, 0.9090909090909091, 0.8863636363636364, 0.007575757575757576, 0.007575757575757576, 0.007575757575757576, 0.007575757575757576, 0.007575757575757576, 0.007575757575757576, 0.007575757575757576, 0.007575757575757576, 0.022727272727272728, 0.5757575757575758], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PEPCK_ATP.gap.json b/pfam_gap_rates/PEPCK_ATP.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d39624a1f5c93770e8b1a1bc747f05a557f66c76
--- /dev/null
+++ b/pfam_gap_rates/PEPCK_ATP.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/PFU.gap.json b/pfam_gap_rates/PFU.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..fc600324697b592e86b6b6c72b0a0447b5e5470b
--- /dev/null
+++ b/pfam_gap_rates/PFU.gap.json
@@ -0,0 +1 @@
+{"family": "PFU", "n_seqs": 355, "length": 121, "gap_rates": [0.8760563380281691, 0.2676056338028169, 0.24788732394366197, 0.23943661971830985, 0.2, 0.18309859154929578, 0.17746478873239438, 0.17746478873239438, 0.17746478873239438, 0.17746478873239438, 0.17464788732394365, 0.17464788732394365, 0.17464788732394365, 0.17464788732394365, 0.17464788732394365, 0.6309859154929578, 0.16338028169014085, 0.16056338028169015, 0.16056338028169015, 0.16338028169014085, 0.15774647887323945, 0.15774647887323945, 0.15492957746478872, 0.15492957746478872, 0.3211267605633803, 0.3154929577464789, 0.16056338028169015, 0.15492957746478872, 0.15211267605633802, 0.15211267605633802, 0.14929577464788732, 0.14647887323943662, 0.14647887323943662, 0.13802816901408452, 0.1352112676056338, 0.1352112676056338, 0.1323943661971831, 0.1323943661971831, 0.14929577464788732, 0.17183098591549295, 0.23098591549295774, 0.19154929577464788, 0.7492957746478873, 0.8056338028169014, 0.9352112676056338, 0.9211267605633803, 0.780281690140845, 0.49295774647887325, 0.1323943661971831, 0.12394366197183099, 0.11549295774647887, 0.12112676056338029, 0.11830985915492957, 0.10985915492957747, 0.10704225352112676, 0.10140845070422536, 0.09577464788732394, 0.9380281690140845, 0.9436619718309859, 0.9408450704225352, 0.9380281690140845, 0.10140845070422536, 0.08169014084507042, 0.07605633802816901, 0.07605633802816901, 0.07887323943661972, 0.0647887323943662, 0.05070422535211268, 0.028169014084507043, 0.028169014084507043, 0.030985915492957747, 0.03380281690140845, 0.030985915492957747, 0.08732394366197183, 0.03943661971830986, 0.0647887323943662, 0.05070422535211268, 0.12394366197183099, 0.07323943661971831, 0.03380281690140845, 0.03380281690140845, 0.030985915492957747, 0.030985915492957747, 0.030985915492957747, 0.030985915492957747, 0.030985915492957747, 0.030985915492957747, 0.03380281690140845, 0.036619718309859155, 0.036619718309859155, 0.036619718309859155, 0.036619718309859155, 0.036619718309859155, 0.036619718309859155, 0.036619718309859155, 0.036619718309859155, 0.03943661971830986, 0.03943661971830986, 0.04225352112676056, 0.04507042253521127, 0.04507042253521127, 0.04507042253521127, 0.04507042253521127, 0.04788732394366197, 0.04507042253521127, 0.04788732394366197, 0.04788732394366197, 0.04788732394366197, 0.04788732394366197, 0.04788732394366197, 0.04788732394366197, 0.05070422535211268, 0.05352112676056338, 0.056338028169014086, 0.07323943661971831, 0.08450704225352113, 0.09014084507042254, 0.09577464788732394, 0.14366197183098592, 0.30704225352112674, 0.6084507042253521], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PHD_Oberon.gap.json b/pfam_gap_rates/PHD_Oberon.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ccc970f601dd38cb77a65698fb737307d99d2ab6
--- /dev/null
+++ b/pfam_gap_rates/PHD_Oberon.gap.json
@@ -0,0 +1 @@
+{"family": "PHD_Oberon", "n_seqs": 258, "length": 142, "gap_rates": [0.2131782945736434, 0.12015503875968993, 0.1124031007751938, 0.11627906976744186, 0.1124031007751938, 0.10077519379844961, 0.10077519379844961, 0.09689922480620156, 0.09689922480620156, 0.09302325581395349, 0.8410852713178295, 0.872093023255814, 0.9457364341085271, 0.8875968992248062, 0.8410852713178295, 0.8410852713178295, 0.39147286821705424, 0.375968992248062, 0.38372093023255816, 0.35658914728682173, 0.34108527131782945, 0.3333333333333333, 0.3333333333333333, 0.3333333333333333, 0.32945736434108525, 0.32558139534883723, 0.03488372093023256, 0.031007751937984496, 0.031007751937984496, 0.023255813953488372, 0.023255813953488372, 0.023255813953488372, 0.023255813953488372, 0.023255813953488372, 0.023255813953488372, 0.023255813953488372, 0.01937984496124031, 0.01937984496124031, 0.01937984496124031, 0.01937984496124031, 0.01937984496124031, 0.01937984496124031, 0.01937984496124031, 0.8410852713178295, 0.01937984496124031, 0.01937984496124031, 0.01937984496124031, 0.01937984496124031, 0.015503875968992248, 0.015503875968992248, 0.01937984496124031, 0.01937984496124031, 0.015503875968992248, 0.015503875968992248, 0.015503875968992248, 0.015503875968992248, 0.015503875968992248, 0.7751937984496124, 0.49612403100775193, 0.4573643410852713, 0.4573643410852713, 0.44573643410852715, 0.4418604651162791, 0.4418604651162791, 0.4418604651162791, 0.015503875968992248, 0.007751937984496124, 0.007751937984496124, 0.007751937984496124, 0.007751937984496124, 0.007751937984496124, 0.003875968992248062, 0.003875968992248062, 0.003875968992248062, 0.003875968992248062, 0.003875968992248062, 0.003875968992248062, 0.007751937984496124, 0.003875968992248062, 0.007751937984496124, 0.007751937984496124, 0.7170542635658915, 0.7170542635658915, 0.007751937984496124, 0.011627906976744186, 0.015503875968992248, 0.015503875968992248, 0.015503875968992248, 0.26356589147286824, 0.8914728682170543, 0.872093023255814, 0.2248062015503876, 0.046511627906976744, 0.03488372093023256, 0.031007751937984496, 0.031007751937984496, 0.027131782945736434, 0.01937984496124031, 0.011627906976744186, 0.011627906976744186, 0.011627906976744186, 0.011627906976744186, 0.011627906976744186, 0.011627906976744186, 0.011627906976744186, 0.015503875968992248, 0.015503875968992248, 0.015503875968992248, 0.015503875968992248, 0.015503875968992248, 0.015503875968992248, 0.015503875968992248, 0.015503875968992248, 0.015503875968992248, 0.023255813953488372, 0.023255813953488372, 0.023255813953488372, 0.027131782945736434, 0.027131782945736434, 0.027131782945736434, 0.027131782945736434, 0.027131782945736434, 0.031007751937984496, 0.031007751937984496, 0.031007751937984496, 0.031007751937984496, 0.03875968992248062, 0.03875968992248062, 0.03875968992248062, 0.03875968992248062, 0.03875968992248062, 0.03875968992248062, 0.03875968992248062, 0.04263565891472868, 0.04263565891472868, 0.04263565891472868, 0.04263565891472868, 0.04263565891472868, 0.046511627906976744, 0.050387596899224806, 0.13953488372093023, 0.813953488372093], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PHP.gap.json b/pfam_gap_rates/PHP.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..db04b3ba27b56dc2b6bd821906b862165402a3d0
--- /dev/null
+++ b/pfam_gap_rates/PHP.gap.json
@@ -0,0 +1 @@
+{"family": "PHP", "n_seqs": 5000, "length": 439, "gap_rates": [0.1808, 0.0758, 0.0642, 0.0432, 0.0366, 0.028, 0.0296, 0.0358, 0.0388, 0.8302, 0.144, 0.1486, 0.2356, 0.0404, 0.0226, 0.0316, 0.1794, 0.1592, 0.014, 0.0112, 0.01, 0.0094, 0.0094, 0.0094, 0.009, 0.0088, 0.0088, 0.0088, 0.0086, 0.0058, 0.0098, 0.0056, 0.0056, 0.0058, 0.005, 0.005, 0.005, 0.006, 0.0086, 0.0064, 0.006, 0.0064, 0.7344, 0.7422, 0.7476, 0.7722, 0.7816, 0.7976, 0.8804, 0.9082, 0.9262, 0.9454, 0.9318, 0.9116, 0.8866, 0.8528, 0.7856, 0.7746, 0.7656, 0.746, 0.7382, 0.7316, 0.0058, 0.0224, 0.0156, 0.0154, 0.0134, 0.0142, 0.0182, 0.0176, 0.0174, 0.6422, 0.6438, 0.6318, 0.0784, 0.1444, 0.0718, 0.0466, 0.0202, 0.0186, 0.0188, 0.019, 0.0192, 0.0194, 0.0196, 0.0198, 0.06, 0.0642, 0.0626, 0.0892, 0.1014, 0.1218, 0.1368, 0.2054, 0.3336, 0.3464, 0.4168, 0.5322, 0.5936, 0.6144, 0.6262, 0.6356, 0.6436, 0.6578, 0.6894, 0.7018, 0.7184, 0.7436, 0.7562, 0.7646, 0.7692, 0.7816, 0.7878, 0.794, 0.8024, 0.807, 0.8112, 0.813, 0.8146, 0.8178, 0.8226, 0.8276, 0.8342, 0.8536, 0.8612, 0.8668, 0.871, 0.8728, 0.8744, 0.8772, 0.8812, 0.886, 0.8894, 0.8914, 0.8926, 0.8936, 0.8952, 0.8958, 0.899, 0.902, 0.9028, 0.9036, 0.9074, 0.9076, 0.9084, 0.9088, 0.909, 0.9094, 0.9098, 0.91, 0.9108, 0.9114, 0.9116, 0.9116, 0.9118, 0.9118, 0.912, 0.9126, 0.9126, 0.9128, 0.913, 0.913, 0.913, 0.9132, 0.9134, 0.9134, 0.9134, 0.9134, 0.9136, 0.9138, 0.914, 0.9142, 0.9142, 0.9142, 0.9144, 0.9144, 0.9148, 0.9148, 0.9148, 0.9148, 0.915, 0.915, 0.915, 0.9152, 0.9152, 0.9154, 0.9154, 0.9154, 0.9154, 0.9154, 0.9154, 0.9164, 0.9172, 0.9306, 0.921, 0.9166, 0.9156, 0.9154, 0.9154, 0.9154, 0.9154, 0.9154, 0.9154, 0.9152, 0.915, 0.915, 0.915, 0.915, 0.9148, 0.9148, 0.9148, 0.9148, 0.9144, 0.9142, 0.9142, 0.9142, 0.9142, 0.914, 0.9138, 0.9134, 0.9134, 0.9134, 0.9134, 0.9132, 0.9132, 0.913, 0.913, 0.913, 0.9128, 0.9126, 0.9124, 0.912, 0.9118, 0.9118, 0.9116, 0.9114, 0.9112, 0.9106, 0.91, 0.9096, 0.9092, 0.909, 0.9088, 0.9078, 0.9076, 0.9062, 0.9034, 0.9026, 0.9012, 0.8974, 0.8954, 0.894, 0.893, 0.8918, 0.8904, 0.8878, 0.883, 0.8782, 0.8754, 0.874, 0.8714, 0.868, 0.8636, 0.859, 0.8458, 0.8296, 0.8258, 0.8188, 0.8156, 0.8142, 0.8126, 0.8088, 0.8038, 0.7984, 0.7912, 0.7844, 0.775, 0.7668, 0.7612, 0.7496, 0.7318, 0.7114, 0.698, 0.6778, 0.6478, 0.6394, 0.6336, 0.6218, 0.606, 0.5712, 0.4368, 0.3746, 0.3394, 0.3286, 0.2238, 0.3974, 0.3742, 0.3614, 0.3478, 0.3302, 0.326, 0.3254, 0.3266, 0.3272, 0.3204, 0.4126, 0.4028, 0.3766, 0.3676, 0.3274, 0.9446, 0.9356, 0.3314, 0.347, 0.346, 0.309, 0.8954, 0.8978, 0.903, 0.907, 0.9098, 0.9152, 0.9204, 0.9268, 0.9308, 0.9384, 0.9414, 0.9472, 0.9492, 0.9452, 0.9408, 0.9364, 0.9292, 0.9232, 0.9182, 0.9134, 0.9088, 0.9042, 0.9008, 0.8962, 0.8938, 0.3106, 0.3246, 0.3252, 0.3262, 0.3276, 0.3296, 0.3396, 0.3418, 0.3458, 0.4774, 0.4634, 0.4642, 0.8428, 0.454, 0.4466, 0.441, 0.4368, 0.4326, 0.4322, 0.4308, 0.399, 0.3992, 0.4004, 0.404, 0.409, 0.4072, 0.9164, 0.929, 0.9428, 0.9474, 0.9382, 0.9238, 0.8964, 0.42, 0.5302, 0.5094, 0.5026, 0.491, 0.4884, 0.4878, 0.4916, 0.4964, 0.4976, 0.5032, 0.501, 0.504, 0.5004, 0.5028, 0.5, 0.5016, 0.5026, 0.9384, 0.505, 0.4788, 0.5618, 0.5758, 0.5616, 0.9182, 0.9222, 0.9266, 0.9296, 0.9384, 0.949, 0.9468, 0.9318, 0.9282, 0.924, 0.9206, 0.9166, 0.563, 0.54, 0.5244, 0.4826, 0.7918, 0.4784, 0.4776, 0.4774, 0.4752, 0.4746, 0.4748, 0.4752, 0.4756, 0.4764, 0.4776, 0.5484, 0.6008, 0.6788, 0.8286, 0.6732, 0.485, 0.4864, 0.4872, 0.4886, 0.4922, 0.4954, 0.5078, 0.5356, 0.7372], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PHP_C.gap.json b/pfam_gap_rates/PHP_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..5f6cd7ecb50b878b9e0987f11fe6f5095e0b8153
--- /dev/null
+++ b/pfam_gap_rates/PHP_C.gap.json
@@ -0,0 +1 @@
+{"family": "PHP_C", "n_seqs": 558, "length": 57, "gap_rates": [0.921146953405018, 0.7347670250896058, 0.600358422939068, 0.532258064516129, 0.45878136200716846, 0.3817204301075269, 0.35304659498207885, 0.3100358422939068, 0.26344086021505375, 0.22580645161290322, 0.1953405017921147, 0.16666666666666666, 0.14874551971326164, 0.12903225806451613, 0.1003584229390681, 0.06630824372759857, 0.05197132616487455, 0.04121863799283154, 0.012544802867383513, 0.010752688172043012, 0.008960573476702509, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0017921146953405018, 0.008960573476702509, 0.010752688172043012, 0.012544802867383513, 0.023297491039426525, 0.03046594982078853, 0.06630824372759857, 0.0931899641577061, 0.12007168458781362, 0.12903225806451613, 0.14157706093189965, 0.931899641577061, 0.2078853046594982, 0.1863799283154122, 0.1917562724014337, 0.22401433691756273, 0.21863799283154123, 0.2992831541218638, 0.26523297491039427, 0.2007168458781362, 0.20430107526881722, 0.2078853046594982, 0.21505376344086022, 0.22401433691756273, 0.22939068100358423, 0.23476702508960573, 0.2616487455197133, 0.34946236559139787, 0.45878136200716846, 0.6290322580645161, 0.8369175627240143], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PH_12.gap.json b/pfam_gap_rates/PH_12.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..96a97c3ba88961c1423ac49d67a75d93546305e5
--- /dev/null
+++ b/pfam_gap_rates/PH_12.gap.json
@@ -0,0 +1 @@
+{"family": "PH_12", "n_seqs": 442, "length": 194, "gap_rates": [0.5384615384615384, 0.49321266968325794, 0.2647058823529412, 0.1583710407239819, 0.15610859728506787, 0.11990950226244344, 0.11312217194570136, 0.10407239819004525, 0.08597285067873303, 0.08597285067873303, 0.08144796380090498, 0.07918552036199095, 0.07918552036199095, 0.07918552036199095, 0.07692307692307693, 0.07692307692307693, 0.08144796380090498, 0.8167420814479638, 0.8506787330316742, 0.8710407239819005, 0.9298642533936652, 0.8981900452488688, 0.8597285067873304, 0.8438914027149321, 0.8144796380090498, 0.5067873303167421, 0.6289592760180995, 0.9140271493212669, 0.3393665158371041, 0.3009049773755656, 0.24660633484162897, 0.17873303167420815, 0.16289592760180996, 0.18099547511312217, 0.251131221719457, 0.8190045248868778, 0.8438914027149321, 0.8642533936651584, 0.8981900452488688, 0.918552036199095, 0.9298642533936652, 0.9434389140271493, 0.9321266968325792, 0.9253393665158371, 0.9117647058823529, 0.8778280542986425, 0.8552036199095022, 0.8280542986425339, 0.8167420814479638, 0.05429864253393665, 0.04524886877828054, 0.03619909502262444, 0.033936651583710405, 0.03619909502262444, 0.049773755656108594, 0.03167420814479638, 0.029411764705882353, 0.029411764705882353, 0.029411764705882353, 0.029411764705882353, 0.029411764705882353, 0.029411764705882353, 0.029411764705882353, 0.027149321266968326, 0.027149321266968326, 0.027149321266968326, 0.027149321266968326, 0.029411764705882353, 0.13800904977375567, 0.22624434389140272, 0.2171945701357466, 0.2850678733031674, 0.3257918552036199, 0.3552036199095023, 0.5656108597285068, 0.5950226244343891, 0.38461538461538464, 0.3438914027149321, 0.3031674208144796, 0.2828054298642534, 0.2398190045248869, 0.22171945701357465, 0.09276018099547512, 0.049773755656108594, 0.042986425339366516, 0.011312217194570135, 0.011312217194570135, 0.013574660633484163, 0.011312217194570135, 0.013574660633484163, 0.013574660633484163, 0.011312217194570135, 0.01583710407239819, 0.011312217194570135, 0.011312217194570135, 0.011312217194570135, 0.00904977375565611, 0.013574660633484163, 0.013574660633484163, 0.033936651583710405, 0.9479638009049773, 0.9411764705882353, 0.024886877828054297, 0.024886877828054297, 0.01583710407239819, 0.020361990950226245, 0.9389140271493213, 0.9434389140271493, 0.9434389140271493, 0.9434389140271493, 0.9434389140271493, 0.9411764705882353, 0.9343891402714932, 0.038461538461538464, 0.09954751131221719, 0.3416289592760181, 0.4751131221719457, 0.6787330316742082, 0.7081447963800905, 0.751131221719457, 0.7058823529411765, 0.6470588235294118, 0.8778280542986425, 0.8981900452488688, 0.9230769230769231, 0.9389140271493213, 0.9321266968325792, 0.9140271493212669, 0.8891402714932126, 0.8597285067873304, 0.038461538461538464, 0.05429864253393665, 0.042986425339366516, 0.042986425339366516, 0.042986425339366516, 0.04524886877828054, 0.03619909502262444, 0.038461538461538464, 0.04072398190045249, 0.042986425339366516, 0.04524886877828054, 0.04751131221719457, 0.049773755656108594, 0.05203619909502263, 0.6968325791855203, 0.7918552036199095, 0.8371040723981901, 0.8461538461538461, 0.8619909502262444, 0.8823529411764706, 0.8891402714932126, 0.9004524886877828, 0.918552036199095, 0.9321266968325792, 0.9479638009049773, 0.9343891402714932, 0.9230769230769231, 0.916289592760181, 0.8959276018099548, 0.8891402714932126, 0.8800904977375565, 0.8484162895927602, 0.8393665158371041, 0.834841628959276, 0.7624434389140271, 0.20361990950226244, 0.08144796380090498, 0.01809954751131222, 0.01809954751131222, 0.01809954751131222, 0.01809954751131222, 0.01809954751131222, 0.01809954751131222, 0.01809954751131222, 0.01809954751131222, 0.01809954751131222, 0.01809954751131222, 0.01809954751131222, 0.01809954751131222, 0.01809954751131222, 0.01583710407239819, 0.01809954751131222, 0.024886877828054297, 0.027149321266968326, 0.029411764705882353, 0.03167420814479638, 0.03167420814479638, 0.029411764705882353, 0.029411764705882353, 0.03619909502262444, 0.06787330316742081, 0.09728506787330317, 0.11085972850678733, 0.5769230769230769], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PH_13.gap.json b/pfam_gap_rates/PH_13.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a0c304b549c859a35ee1e5802f9b99d481374347
--- /dev/null
+++ b/pfam_gap_rates/PH_13.gap.json
@@ -0,0 +1 @@
+{"family": "PH_13", "n_seqs": 158, "length": 180, "gap_rates": [0.5822784810126582, 0.5759493670886076, 0.569620253164557, 0.5632911392405063, 0.5506329113924051, 0.5379746835443038, 0.5189873417721519, 0.5, 0.4810126582278481, 0.47468354430379744, 0.47468354430379744, 0.43670886075949367, 0.43670886075949367, 0.4240506329113924, 0.31645569620253167, 0.2911392405063291, 0.2848101265822785, 0.2848101265822785, 0.25316455696202533, 0.23417721518987342, 0.10126582278481013, 0.05063291139240506, 0.0189873417721519, 0.0189873417721519, 0.0189873417721519, 0.0189873417721519, 0.0189873417721519, 0.0189873417721519, 0.0189873417721519, 0.0189873417721519, 0.04430379746835443, 0.0189873417721519, 0.02531645569620253, 0.0379746835443038, 0.0379746835443038, 0.0379746835443038, 0.0379746835443038, 0.8860759493670886, 0.8860759493670886, 0.0379746835443038, 0.0379746835443038, 0.0379746835443038, 0.0379746835443038, 0.0379746835443038, 0.0379746835443038, 0.0379746835443038, 0.0379746835443038, 0.0379746835443038, 0.0379746835443038, 0.0379746835443038, 0.0379746835443038, 0.0379746835443038, 0.0379746835443038, 0.0379746835443038, 0.04430379746835443, 0.06329113924050633, 0.27848101265822783, 0.26582278481012656, 0.22784810126582278, 0.22784810126582278, 0.7215189873417721, 0.47468354430379744, 0.35443037974683544, 0.33544303797468356, 0.310126582278481, 0.2848101265822785, 0.2848101265822785, 0.2848101265822785, 0.2848101265822785, 0.2721518987341772, 0.2088607594936709, 0.20253164556962025, 0.930379746835443, 0.9430379746835443, 0.9113924050632911, 0.24050632911392406, 0.23417721518987342, 0.22784810126582278, 0.22151898734177214, 0.2088607594936709, 0.08860759493670886, 0.08860759493670886, 0.10759493670886076, 0.08860759493670886, 0.0759493670886076, 0.08227848101265822, 0.08227848101265822, 0.08227848101265822, 0.08227848101265822, 0.08227848101265822, 0.08227848101265822, 0.08227848101265822, 0.08227848101265822, 0.08227848101265822, 0.08227848101265822, 0.08227848101265822, 0.740506329113924, 0.7848101265822784, 0.8227848101265823, 0.8481012658227848, 0.9367088607594937, 0.9430379746835443, 0.9430379746835443, 0.8860759493670886, 0.8417721518987342, 0.8164556962025317, 0.7848101265822784, 0.7278481012658228, 0.08227848101265822, 0.10759493670886076, 0.11392405063291139, 0.15822784810126583, 0.17088607594936708, 0.569620253164557, 0.2911392405063291, 0.18354430379746836, 0.17088607594936708, 0.16455696202531644, 0.13924050632911392, 0.13291139240506328, 0.13291139240506328, 0.13291139240506328, 0.9050632911392406, 0.8734177215189873, 0.13924050632911392, 0.13924050632911392, 0.13924050632911392, 0.13924050632911392, 0.14556962025316456, 0.8987341772151899, 0.9367088607594937, 0.9430379746835443, 0.9367088607594937, 0.9050632911392406, 0.8987341772151899, 0.13924050632911392, 0.13924050632911392, 0.13924050632911392, 0.13924050632911392, 0.13924050632911392, 0.13924050632911392, 0.13924050632911392, 0.13924050632911392, 0.13924050632911392, 0.13924050632911392, 0.13924050632911392, 0.13924050632911392, 0.13924050632911392, 0.13924050632911392, 0.13924050632911392, 0.13924050632911392, 0.13924050632911392, 0.13924050632911392, 0.13924050632911392, 0.13924050632911392, 0.14556962025316456, 0.16455696202531644, 0.18354430379746836, 0.189873417721519, 0.21518987341772153, 0.25316455696202533, 0.26582278481012656, 0.2848101265822785, 0.2911392405063291, 0.3227848101265823, 0.33544303797468356, 0.34810126582278483, 0.3860759493670886, 0.41139240506329117, 0.5126582278481012, 0.5316455696202531, 0.5569620253164557, 0.6582278481012658, 0.620253164556962, 0.6392405063291139, 0.6455696202531646, 0.6708860759493671, 0.689873417721519, 0.7025316455696202, 0.7151898734177216], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PH_9.gap.json b/pfam_gap_rates/PH_9.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..50327c88f1cc3be9e0a1b9ab63c19399339fa66f
--- /dev/null
+++ b/pfam_gap_rates/PH_9.gap.json
@@ -0,0 +1 @@
+{"family": "PH_9", "n_seqs": 598, "length": 158, "gap_rates": [0.5953177257525084, 0.4498327759197324, 0.24749163879598662, 0.17558528428093645, 0.1688963210702341, 0.1588628762541806, 0.15217391304347827, 0.1454849498327759, 0.14046822742474915, 0.1354515050167224, 0.1254180602006689, 0.12040133779264214, 0.12374581939799331, 0.11872909698996656, 0.10535117056856187, 0.09364548494983277, 0.08862876254180602, 0.08193979933110368, 0.08193979933110368, 0.697324414715719, 0.6789297658862876, 0.09531772575250837, 0.05518394648829431, 0.05351170568561873, 0.05351170568561873, 0.05016722408026756, 0.048494983277591976, 0.046822742474916385, 0.0451505016722408, 0.0451505016722408, 0.0451505016722408, 0.0451505016722408, 0.0451505016722408, 0.0451505016722408, 0.0451505016722408, 0.0451505016722408, 0.0451505016722408, 0.0451505016722408, 0.0451505016722408, 0.0451505016722408, 0.0451505016722408, 0.0451505016722408, 0.0451505016722408, 0.1020066889632107, 0.1020066889632107, 0.8244147157190636, 0.8478260869565217, 0.8779264214046822, 0.8979933110367893, 0.9130434782608695, 0.9264214046822743, 0.9331103678929766, 0.939799331103679, 0.9414715719063546, 0.9481605351170569, 0.9498327759197325, 0.9464882943143813, 0.939799331103679, 0.9331103678929766, 0.9264214046822743, 0.9180602006688964, 0.9063545150501672, 0.8896321070234113, 0.8578595317725752, 0.8461538461538461, 0.81438127090301, 0.09197324414715718, 0.1488294314381271, 0.14715719063545152, 0.13879598662207357, 0.12040133779264214, 0.13043478260869565, 0.12709030100334448, 0.13377926421404682, 0.35618729096989965, 0.5752508361204013, 0.5367892976588629, 0.2408026755852843, 0.7491638795986622, 0.7675585284280937, 0.7792642140468228, 0.8060200668896321, 0.8478260869565217, 0.8846153846153846, 0.939799331103679, 0.9481605351170569, 0.9180602006688964, 0.8662207357859532, 0.8294314381270903, 0.794314381270903, 0.7709030100334449, 0.7525083612040134, 0.7424749163879598, 0.1939799331103679, 0.1454849498327759, 0.11036789297658862, 0.11872909698996656, 0.6187290969899666, 0.5836120401337793, 0.5384615384615384, 0.45652173913043476, 0.3963210702341137, 0.033444816053511704, 0.028428093645484948, 0.023411371237458192, 0.02508361204013378, 0.021739130434782608, 0.020066889632107024, 0.020066889632107024, 0.020066889632107024, 0.016722408026755852, 0.016722408026755852, 0.7976588628762542, 0.7709030100334449, 0.01839464882943144, 0.01839464882943144, 0.016722408026755852, 0.016722408026755852, 0.016722408026755852, 0.016722408026755852, 0.7725752508361204, 0.016722408026755852, 0.015050167224080268, 0.01839464882943144, 0.01839464882943144, 0.020066889632107024, 0.01839464882943144, 0.016722408026755852, 0.016722408026755852, 0.030100334448160536, 0.03511705685618729, 0.030100334448160536, 0.046822742474916385, 0.03511705685618729, 0.021739130434782608, 0.021739130434782608, 0.021739130434782608, 0.021739130434782608, 0.023411371237458192, 0.023411371237458192, 0.026755852842809364, 0.030100334448160536, 0.03511705685618729, 0.0451505016722408, 0.046822742474916385, 0.046822742474916385, 0.046822742474916385, 0.046822742474916385, 0.046822742474916385, 0.05351170568561873, 0.06521739130434782, 0.0802675585284281, 0.10033444816053512, 0.3277591973244147, 0.34448160535117056, 0.36622073578595316, 0.4013377926421405, 0.5], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PID.gap.json b/pfam_gap_rates/PID.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..6d987f38da667267dd10f7220fbfeb1dcc63fd98
--- /dev/null
+++ b/pfam_gap_rates/PID.gap.json
@@ -0,0 +1 @@
+{"family": "PID", "n_seqs": 1282, "length": 180, "gap_rates": [0.4297971918876755, 0.40093603744149764, 0.37597503900156004, 0.3486739469578783, 0.32605304212168484, 0.3237129485179407, 0.32293291731669266, 0.32293291731669266, 0.3237129485179407, 0.32293291731669266, 0.32293291731669266, 0.32293291731669266, 0.3221528861154446, 0.3221528861154446, 0.8299531981279251, 0.6224648985959438, 0.7035881435257411, 0.6794071762870515, 0.6872074882995319, 0.6856474258970359, 0.6521060842433697, 0.5592823712948518, 0.48829953198127923, 0.375195007800312, 0.35725429017160687, 0.3369734789391576, 0.29407176287051484, 0.27223088923556943, 0.312792511700468, 0.26443057722308894, 0.2714508580343214, 0.27223088923556943, 0.2706708268330733, 0.2714508580343214, 0.26833073322932915, 0.26833073322932915, 0.2675507020280811, 0.8424336973478939, 0.8478939157566303, 0.8931357254290172, 0.9001560062402496, 0.905616224648986, 0.9141965678627145, 0.9204368174726989, 0.9290171606864275, 0.9165366614664586, 0.9110764430577223, 0.9024960998439937, 0.8962558502340093, 0.890015600624025, 0.8455538221528861, 0.827613104524181, 0.7605304212168487, 0.6505460218408736, 0.6123244929797191, 0.6006240249609984, 0.5608424336973479, 0.5374414976599063, 0.48829953198127923, 0.4032761310452418, 0.29797191887675506, 0.26443057722308894, 0.24336973478939158, 0.17238689547581904, 0.14898595943837753, 0.13884555382215288, 0.13338533541341654, 0.12870514820592824, 0.11388455538221529, 0.1060842433697348, 0.10452418096723869, 0.10374414976599064, 0.08970358814352575, 0.08658346333853355, 0.08268330733229329, 0.08268330733229329, 0.08268330733229329, 0.08190327613104524, 0.07878315132605304, 0.07956318252730109, 0.08034321372854915, 0.07956318252730109, 0.07878315132605304, 0.07722308892355695, 0.07644305772230889, 0.07098283931357255, 0.8822152886115444, 0.9001560062402496, 0.9258970358814352, 0.9422776911076443, 0.9188767550702028, 0.8876755070202809, 0.8400936037441498, 0.06630265210608424, 0.05538221528861154, 0.06474258970358815, 0.054602184087363496, 0.05226209048361934, 0.0514820592823713, 0.0483619344773791, 0.046801872074883, 0.044461778471138844, 0.041341653666146644, 0.0390015600624025, 0.039781591263650544, 0.0405616224648986, 0.039781591263650544, 0.039781591263650544, 0.0390015600624025, 0.0390015600624025, 0.8728549141965679, 0.6599063962558502, 0.06708268330733229, 0.044461778471138844, 0.05382215288611544, 0.8424336973478939, 0.06162246489859594, 0.0514820592823713, 0.0452418096723869, 0.042901716068642744, 0.0421216848673947, 0.042901716068642744, 0.0436817472698908, 0.8010920436817472, 0.8424336973478939, 0.8798751950078003, 0.9126365054602185, 0.9180967238689548, 0.9290171606864275, 0.9360374414976599, 0.9336973478939158, 0.9243369734789392, 0.9180967238689548, 0.8923556942277691, 0.8533541341653667, 0.8081123244929798, 0.7956318252730109, 0.19734789391575663, 0.0842433697347894, 0.0811232449297972, 0.05070202808112324, 0.05226209048361934, 0.04914196567862714, 0.062402496099843996, 0.05694227769110764, 0.05226209048361934, 0.0514820592823713, 0.06318252730109204, 0.08970358814352575, 0.06396255850234009, 0.05226209048361934, 0.05226209048361934, 0.05226209048361934, 0.05694227769110764, 0.059282371294851796, 0.06474258970358815, 0.7730109204368175, 0.5967238689547582, 0.22230889235569423, 0.12558502340093602, 0.10686427457098284, 0.11154446177847113, 0.11388455538221529, 0.11934477379095164, 0.12324492979719189, 0.12714508580343215, 0.12870514820592824, 0.14274570982839313, 0.1497659906396256, 0.15054602184087362, 0.15366614664586584, 0.16380655226209048, 0.17160686427457097, 0.18642745709828393, 0.21684867394695787, 0.23868954758190328, 0.28081123244929795, 0.34399375975039004, 0.4290171606864275, 0.5624024960998439], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PIG-L.gap.json b/pfam_gap_rates/PIG-L.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..198ad7839b620dfbd23d370455d62dcd936b2d3d
--- /dev/null
+++ b/pfam_gap_rates/PIG-L.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/PIG-U.gap.json b/pfam_gap_rates/PIG-U.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f5c4cb74540a3d8c9552aed802ddd95609236be3
--- /dev/null
+++ b/pfam_gap_rates/PIG-U.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/PIN.gap.json b/pfam_gap_rates/PIN.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..38a530316f9514f6c52a92bfe0a3d78226837d7e
--- /dev/null
+++ b/pfam_gap_rates/PIN.gap.json
@@ -0,0 +1 @@
+{"family": "PIN", "n_seqs": 4068, "length": 144, "gap_rates": [0.4886922320550639, 0.147984267453294, 0.09857423795476893, 0.08652900688298919, 0.08456243854473942, 0.08382497541789577, 0.08357915437561456, 0.08235004916420846, 0.08112094395280237, 0.09931170108161258, 0.09709931170108162, 0.09464110127826943, 0.8035889872173058, 0.9333824975417896, 0.492133726647001, 0.08431661750245821, 0.08775811209439528, 0.08259587020648967, 0.07792527040314651, 0.0943952802359882, 0.09070796460176991, 0.168141592920354, 0.15658800393313668, 0.1288102261553589, 0.07325467059980334, 0.06661750245821042, 0.0688298918387414, 0.06661750245821042, 0.08529990167158309, 0.13348082595870206, 0.19100294985250738, 0.576204523107178, 0.7878564405113078, 0.7032940019665683, 0.37364798426745327, 0.04744346116027532, 0.043510324483775814, 0.0420353982300885, 0.038102261553588986, 0.03687315634218289, 0.03638151425762045, 0.036135693215339236, 0.035152409046214354, 0.0344149459193707, 0.03367748279252704, 0.03171091445427729, 0.029744346116027533, 0.029498525073746312, 0.029498525073746312, 0.030727630285152407, 0.02999016715830875, 0.029744346116027533, 0.029498525073746312, 0.029744346116027533, 0.8053097345132744, 0.8736479842674533, 0.9493608652900688, 0.910275319567355, 0.841937069813176, 0.717551622418879, 0.5931661750245821, 0.4884464110127827, 0.37438544739429697, 0.27064896755162243, 0.19469026548672566, 0.15486725663716813, 0.1187315634218289, 0.08185840707964602, 0.04178957718780728, 0.03121927236971485, 0.025565388397246803, 0.025319567354965586, 0.024336283185840708, 0.024582104228121928, 0.024827925270403145, 0.026057030481809244, 0.03023598820058997, 0.7595870206489675, 0.025565388397246803, 0.02064896755162242, 0.018928220255653883, 0.01720747295968535, 0.016224188790560472, 0.015732546705998034, 0.030973451327433628, 0.02384464110127827, 0.9289577187807276, 0.11627335299901671, 0.05580137659783677, 0.02261553588987217, 0.017699115044247787, 0.01671583087512291, 0.014011799410029498, 0.015486725663716814, 0.014257620452310717, 0.014995083579154375, 0.01966568338249754, 0.017944936086529008, 0.015240904621435595, 0.014749262536873156, 0.015486725663716814, 0.029252704031465092, 0.04252704031465093, 0.1696165191740413, 0.5703048180924287, 0.7463126843657817, 0.921583087512291, 0.9414945919370699, 0.7826941986234022, 0.6125860373647984, 0.5149950835791544, 0.02384464110127827, 0.019419862340216323, 0.019174041297935103, 0.018928220255653883, 0.016470009832841692, 0.01696165191740413, 0.01720747295968535, 0.018190757128810225, 0.018682399213372666, 0.01991150442477876, 0.021878072763028514, 0.023107177974434612, 0.024827925270403145, 0.0267944936086529, 0.03048180924287119, 0.03171091445427729, 0.03220255653883972, 0.084070796460177, 0.04793510324483776, 0.0395771878072763, 0.6234021632251721, 0.04129793510324484, 0.046214355948869225, 0.06047197640117994, 0.13987217305801378, 0.18289085545722714, 0.890117994100295, 0.2563913470993117, 0.3215339233038348, 0.4134709931170108, 0.5125368731563422, 0.6642084562438545, 0.8856932153392331], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PINIT.gap.json b/pfam_gap_rates/PINIT.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..1e3a46cde2c2cb7b8cd8164a27a03e05bfab0bf1
--- /dev/null
+++ b/pfam_gap_rates/PINIT.gap.json
@@ -0,0 +1 @@
+{"family": "PINIT", "n_seqs": 288, "length": 182, "gap_rates": [0.7673611111111112, 0.2222222222222222, 0.16666666666666666, 0.125, 0.10416666666666667, 0.08333333333333333, 0.0798611111111111, 0.0798611111111111, 0.0798611111111111, 0.0798611111111111, 0.0763888888888889, 0.0763888888888889, 0.0763888888888889, 0.0763888888888889, 0.0763888888888889, 0.0763888888888889, 0.07291666666666667, 0.07291666666666667, 0.0763888888888889, 0.06944444444444445, 0.06597222222222222, 0.07291666666666667, 0.06944444444444445, 0.5555555555555556, 0.8541666666666666, 0.9201388888888888, 0.90625, 0.75, 0.2326388888888889, 0.16666666666666666, 0.09722222222222222, 0.0798611111111111, 0.06944444444444445, 0.0798611111111111, 0.59375, 0.06597222222222222, 0.0798611111111111, 0.07291666666666667, 0.052083333333333336, 0.04861111111111111, 0.04861111111111111, 0.04861111111111111, 0.04513888888888889, 0.041666666666666664, 0.04513888888888889, 0.04513888888888889, 0.9166666666666666, 0.041666666666666664, 0.041666666666666664, 0.041666666666666664, 0.041666666666666664, 0.041666666666666664, 0.041666666666666664, 0.4895833333333333, 0.05555555555555555, 0.04861111111111111, 0.2569444444444444, 0.0625, 0.059027777777777776, 0.5069444444444444, 0.5868055555555556, 0.6770833333333334, 0.7986111111111112, 0.6527777777777778, 0.5694444444444444, 0.4930555555555556, 0.4305555555555556, 0.4166666666666667, 0.40625, 0.4027777777777778, 0.3888888888888889, 0.03819444444444445, 0.03125, 0.03125, 0.020833333333333332, 0.020833333333333332, 0.03125, 0.9305555555555556, 0.03819444444444445, 0.2534722222222222, 0.3576388888888889, 0.6805555555555556, 0.6840277777777778, 0.84375, 0.8854166666666666, 0.9201388888888888, 0.8993055555555556, 0.8611111111111112, 0.7916666666666666, 0.6944444444444444, 0.6875, 0.5173611111111112, 0.22916666666666666, 0.06944444444444445, 0.024305555555555556, 0.020833333333333332, 0.017361111111111112, 0.017361111111111112, 0.017361111111111112, 0.017361111111111112, 0.013888888888888888, 0.013888888888888888, 0.013888888888888888, 0.020833333333333332, 0.013888888888888888, 0.013888888888888888, 0.017361111111111112, 0.017361111111111112, 0.017361111111111112, 0.020833333333333332, 0.020833333333333332, 0.020833333333333332, 0.020833333333333332, 0.017361111111111112, 0.013888888888888888, 0.4826388888888889, 0.5069444444444444, 0.5138888888888888, 0.5069444444444444, 0.4965277777777778, 0.4722222222222222, 0.017361111111111112, 0.024305555555555556, 0.024305555555555556, 0.024305555555555556, 0.027777777777777776, 0.020833333333333332, 0.013888888888888888, 0.020833333333333332, 0.024305555555555556, 0.024305555555555556, 0.027777777777777776, 0.5381944444444444, 0.027777777777777776, 0.024305555555555556, 0.017361111111111112, 0.017361111111111112, 0.020833333333333332, 0.020833333333333332, 0.020833333333333332, 0.020833333333333332, 0.020833333333333332, 0.020833333333333332, 0.024305555555555556, 0.03125, 0.034722222222222224, 0.034722222222222224, 0.0798611111111111, 0.2326388888888889, 0.8298611111111112, 0.0625, 0.03819444444444445, 0.034722222222222224, 0.034722222222222224, 0.03819444444444445, 0.03819444444444445, 0.041666666666666664, 0.041666666666666664, 0.041666666666666664, 0.8298611111111112, 0.6631944444444444, 0.041666666666666664, 0.09375, 0.06944444444444445, 0.06944444444444445, 0.1701388888888889, 0.8680555555555556, 0.8680555555555556, 0.9444444444444444, 0.8888888888888888, 0.8680555555555556, 0.8611111111111112, 0.0763888888888889, 0.0763888888888889, 0.0763888888888889, 0.0763888888888889, 0.08680555555555555, 0.09027777777777778, 0.09027777777777778, 0.09027777777777778, 0.125, 0.24305555555555555], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PLAC.gap.json b/pfam_gap_rates/PLAC.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..52f8e227ceed0534ac23fb83e3547364b34bbf80
--- /dev/null
+++ b/pfam_gap_rates/PLAC.gap.json
@@ -0,0 +1 @@
+{"family": "PLAC", "n_seqs": 280, "length": 33, "gap_rates": [0.060714285714285714, 0.060714285714285714, 0.02857142857142857, 0.02857142857142857, 0.4607142857142857, 0.5857142857142857, 0.03214285714285714, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0035714285714285713, 0.017857142857142856, 0.025, 0.25], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PLDc_2.gap.json b/pfam_gap_rates/PLDc_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f009ef8467326d092f8f34c687a53de3c057190e
--- /dev/null
+++ b/pfam_gap_rates/PLDc_2.gap.json
@@ -0,0 +1 @@
+{"family": "PLDc_2", "n_seqs": 5000, "length": 214, "gap_rates": [0.839, 0.5466, 0.3378, 0.2336, 0.1966, 0.1708, 0.154, 0.1704, 0.1346, 0.1138, 0.1066, 0.1014, 0.0974, 0.0946, 0.0926, 0.0914, 0.0896, 0.0904, 0.0874, 0.719, 0.9396, 0.945, 0.7332, 0.6926, 0.3376, 0.1062, 0.0934, 0.0888, 0.0824, 0.0822, 0.8764, 0.933, 0.8852, 0.8602, 0.0754, 0.072, 0.0698, 0.0688, 0.0698, 0.0678, 0.9318, 0.0642, 0.061, 0.0592, 0.0592, 0.0592, 0.0644, 0.0592, 0.0564, 0.055, 0.0548, 0.0546, 0.0546, 0.0546, 0.055, 0.6732, 0.468, 0.4394, 0.805, 0.8204, 0.8448, 0.8608, 0.8702, 0.8822, 0.8896, 0.8994, 0.9066, 0.9114, 0.9168, 0.9208, 0.9276, 0.9344, 0.9408, 0.9438, 0.9492, 0.9466, 0.941, 0.9384, 0.9306, 0.9268, 0.9184, 0.9148, 0.9084, 0.9044, 0.8924, 0.8868, 0.874, 0.8656, 0.8522, 0.8292, 0.8104, 0.7894, 0.3256, 0.28, 0.1604, 0.1222, 0.1896, 0.15, 0.154, 0.092, 0.0702, 0.059, 0.0552, 0.053, 0.051, 0.0544, 0.0526, 0.053, 0.6598, 0.0902, 0.0784, 0.0564, 0.0464, 0.0438, 0.043, 0.1002, 0.0842, 0.0686, 0.1262, 0.1334, 0.8292, 0.935, 0.7804, 0.1074, 0.6162, 0.6806, 0.7932, 0.9102, 0.8594, 0.7282, 0.6372, 0.5742, 0.4282, 0.2764, 0.6148, 0.7248, 0.8512, 0.9126, 0.9364, 0.881, 0.801, 0.6602, 0.5836, 0.037, 0.0218, 0.0146, 0.003, 0.003, 0.003, 0.0024, 0.0024, 0.0028, 0.0026, 0.0126, 0.9396, 0.9442, 0.934, 0.0234, 0.012, 0.921, 0.946, 0.9246, 0.9192, 0.0052, 0.006, 0.0076, 0.0046, 0.006, 0.0056, 0.008, 0.0084, 0.0118, 0.0174, 0.0238, 0.032, 0.035, 0.044, 0.7804, 0.8386, 0.8696, 0.846, 0.8334, 0.766, 0.0702, 0.0814, 0.0896, 0.098, 0.1002, 0.1028, 0.1052, 0.1116, 0.1206, 0.1252, 0.1306, 0.1386, 0.1512, 0.8842, 0.9466, 0.8954, 0.8566, 0.2076, 0.304, 0.2336, 0.2492, 0.2702, 0.2826, 0.3046, 0.3276, 0.369, 0.3978, 0.4432, 0.5128, 0.6088, 0.7306], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PLDc_3.gap.json b/pfam_gap_rates/PLDc_3.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..3b442649c70b6fbeea381cb3a10ee52170c9c509
--- /dev/null
+++ b/pfam_gap_rates/PLDc_3.gap.json
@@ -0,0 +1 @@
+{"family": "PLDc_3", "n_seqs": 175, "length": 182, "gap_rates": [0.38857142857142857, 0.2057142857142857, 0.2, 0.14285714285714285, 0.14285714285714285, 0.14285714285714285, 0.14285714285714285, 0.14285714285714285, 0.14285714285714285, 0.14285714285714285, 0.14857142857142858, 0.19428571428571428, 0.14285714285714285, 0.14285714285714285, 0.14285714285714285, 0.14285714285714285, 0.14285714285714285, 0.14285714285714285, 0.14285714285714285, 0.14285714285714285, 0.14857142857142858, 0.14857142857142858, 0.14285714285714285, 0.14285714285714285, 0.14285714285714285, 0.13714285714285715, 0.13714285714285715, 0.14285714285714285, 0.14285714285714285, 0.9142857142857143, 0.14857142857142858, 0.14857142857142858, 0.8114285714285714, 0.14857142857142858, 0.9142857142857143, 0.14857142857142858, 0.9371428571428572, 0.1657142857142857, 0.1657142857142857, 0.9314285714285714, 0.14857142857142858, 0.14285714285714285, 0.14857142857142858, 0.2057142857142857, 0.17714285714285713, 0.17142857142857143, 0.1657142857142857, 0.13714285714285715, 0.13142857142857142, 0.12, 0.12, 0.11428571428571428, 0.11428571428571428, 0.11428571428571428, 0.11428571428571428, 0.11428571428571428, 0.11428571428571428, 0.10857142857142857, 0.10285714285714286, 0.10285714285714286, 0.12, 0.11428571428571428, 0.09714285714285714, 0.10285714285714286, 0.09714285714285714, 0.09714285714285714, 0.09142857142857143, 0.07428571428571429, 0.08, 0.08, 0.07428571428571429, 0.06857142857142857, 0.06285714285714286, 0.04, 0.04, 0.04, 0.04, 0.03428571428571429, 0.03428571428571429, 0.03428571428571429, 0.03428571428571429, 0.03428571428571429, 0.02857142857142857, 0.02857142857142857, 0.02857142857142857, 0.02857142857142857, 0.02857142857142857, 0.02857142857142857, 0.02857142857142857, 0.02857142857142857, 0.02857142857142857, 0.02857142857142857, 0.03428571428571429, 0.02857142857142857, 0.02857142857142857, 0.022857142857142857, 0.022857142857142857, 0.02857142857142857, 0.02857142857142857, 0.02857142857142857, 0.02857142857142857, 0.02857142857142857, 0.02857142857142857, 0.02857142857142857, 0.022857142857142857, 0.022857142857142857, 0.022857142857142857, 0.02857142857142857, 0.02857142857142857, 0.02857142857142857, 0.03428571428571429, 0.04, 0.045714285714285714, 0.05142857142857143, 0.05142857142857143, 0.045714285714285714, 0.05714285714285714, 0.05714285714285714, 0.05142857142857143, 0.03428571428571429, 0.03428571428571429, 0.03428571428571429, 0.03428571428571429, 0.03428571428571429, 0.03428571428571429, 0.04, 0.04, 0.045714285714285714, 0.05142857142857143, 0.06857142857142857, 0.05142857142857143, 0.09714285714285714, 0.11428571428571428, 0.06285714285714286, 0.07428571428571429, 0.045714285714285714, 0.045714285714285714, 0.05142857142857143, 0.045714285714285714, 0.045714285714285714, 0.05714285714285714, 0.05714285714285714, 0.05714285714285714, 0.06285714285714286, 0.06285714285714286, 0.06285714285714286, 0.06285714285714286, 0.07428571428571429, 0.08, 0.07428571428571429, 0.09142857142857143, 0.06285714285714286, 0.06285714285714286, 0.06857142857142857, 0.06285714285714286, 0.06285714285714286, 0.06285714285714286, 0.06285714285714286, 0.06285714285714286, 0.06285714285714286, 0.06857142857142857, 0.06857142857142857, 0.06857142857142857, 0.08571428571428572, 0.37714285714285717, 0.2914285714285714, 0.26857142857142857, 0.26857142857142857, 0.26285714285714284, 0.26857142857142857, 0.25142857142857145, 0.25142857142857145, 0.25142857142857145, 0.25142857142857145, 0.26285714285714284, 0.26285714285714284, 0.26857142857142857, 0.2857142857142857, 0.3142857142857143, 0.3314285714285714, 0.7314285714285714, 0.9485714285714286], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PMT.gap.json b/pfam_gap_rates/PMT.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..2e1b23e71f9fed005c7f7b30a22ed3837f1483f9
--- /dev/null
+++ b/pfam_gap_rates/PMT.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/POPLD.gap.json b/pfam_gap_rates/POPLD.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..6ca7fcba691f79971de709ba041bddd927913a48
--- /dev/null
+++ b/pfam_gap_rates/POPLD.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/POR.gap.json b/pfam_gap_rates/POR.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..885b92e6b3d498b5b518f8deca4c361bd5a4532f
--- /dev/null
+++ b/pfam_gap_rates/POR.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/POT1PC.gap.json b/pfam_gap_rates/POT1PC.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..97e34f615bf1b557f3a7859876e3ba3e425b5445
--- /dev/null
+++ b/pfam_gap_rates/POT1PC.gap.json
@@ -0,0 +1 @@
+{"family": "POT1PC", "n_seqs": 174, "length": 186, "gap_rates": [0.7068965517241379, 0.3045977011494253, 0.2413793103448276, 0.19540229885057472, 0.16666666666666666, 0.14942528735632185, 0.10344827586206896, 0.07471264367816093, 0.06321839080459771, 0.06321839080459771, 0.05747126436781609, 0.05172413793103448, 0.05172413793103448, 0.05172413793103448, 0.05172413793103448, 0.05172413793103448, 0.05172413793103448, 0.05172413793103448, 0.05172413793103448, 0.05172413793103448, 0.05172413793103448, 0.9022988505747126, 0.12643678160919541, 0.8390804597701149, 0.1206896551724138, 0.04597701149425287, 0.04597701149425287, 0.040229885057471264, 0.034482758620689655, 0.034482758620689655, 0.034482758620689655, 0.034482758620689655, 0.034482758620689655, 0.034482758620689655, 0.034482758620689655, 0.034482758620689655, 0.034482758620689655, 0.034482758620689655, 0.034482758620689655, 0.034482758620689655, 0.040229885057471264, 0.04597701149425287, 0.9425287356321839, 0.04597701149425287, 0.040229885057471264, 0.040229885057471264, 0.04597701149425287, 0.04597701149425287, 0.04597701149425287, 0.05747126436781609, 0.1724137931034483, 0.1724137931034483, 0.1781609195402299, 0.22988505747126436, 0.22988505747126436, 0.26436781609195403, 0.2413793103448276, 0.2471264367816092, 0.2413793103448276, 0.735632183908046, 0.9252873563218391, 0.867816091954023, 0.6781609195402298, 0.6264367816091954, 0.5977011494252874, 0.5862068965517241, 0.5747126436781609, 0.5632183908045977, 0.5574712643678161, 0.5459770114942529, 0.5287356321839081, 0.5229885057471264, 0.5172413793103449, 0.6839080459770115, 0.7586206896551724, 0.8620689655172413, 0.9425287356321839, 0.896551724137931, 0.8103448275862069, 0.6896551724137931, 0.6436781609195402, 0.14367816091954022, 0.10344827586206896, 0.09770114942528736, 0.07471264367816093, 0.06896551724137931, 0.05172413793103448, 0.05172413793103448, 0.017241379310344827, 0.9252873563218391, 0.011494252873563218, 0.011494252873563218, 0.011494252873563218, 0.011494252873563218, 0.017241379310344827, 0.017241379310344827, 0.017241379310344827, 0.017241379310344827, 0.017241379310344827, 0.017241379310344827, 0.017241379310344827, 0.017241379310344827, 0.017241379310344827, 0.017241379310344827, 0.017241379310344827, 0.017241379310344827, 0.022988505747126436, 0.4827586206896552, 0.8275862068965517, 0.028735632183908046, 0.028735632183908046, 0.022988505747126436, 0.028735632183908046, 0.028735632183908046, 0.028735632183908046, 0.028735632183908046, 0.028735632183908046, 0.028735632183908046, 0.028735632183908046, 0.028735632183908046, 0.028735632183908046, 0.028735632183908046, 0.034482758620689655, 0.09195402298850575, 0.08045977011494253, 0.06896551724137931, 0.06321839080459771, 0.08620689655172414, 0.13218390804597702, 0.40229885057471265, 0.8390804597701149, 0.8620689655172413, 0.896551724137931, 0.9080459770114943, 0.8793103448275862, 0.8448275862068966, 0.7988505747126436, 0.11494252873563218, 0.08620689655172414, 0.06321839080459771, 0.06896551724137931, 0.06896551724137931, 0.06896551724137931, 0.06896551724137931, 0.9022988505747126, 0.08045977011494253, 0.08045977011494253, 0.07471264367816093, 0.08620689655172414, 0.1896551724137931, 0.8218390804597702, 0.16666666666666666, 0.13218390804597702, 0.10344827586206896, 0.08045977011494253, 0.08045977011494253, 0.08620689655172414, 0.09195402298850575, 0.09195402298850575, 0.4367816091954023, 0.6609195402298851, 0.7528735632183908, 0.7988505747126436, 0.8735632183908046, 0.7758620689655172, 0.7298850574712644, 0.5747126436781609, 0.13218390804597702, 0.1206896551724138, 0.12643678160919541, 0.13218390804597702, 0.14942528735632185, 0.15517241379310345, 0.15517241379310345, 0.16091954022988506, 0.16666666666666666, 0.1839080459770115, 0.1839080459770115, 0.1839080459770115, 0.20114942528735633, 0.20689655172413793, 0.23563218390804597, 0.28735632183908044, 0.367816091954023, 0.5287356321839081, 0.9310344827586207], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PPDK_N.gap.json b/pfam_gap_rates/PPDK_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f5152d2dc5ca18272c0bd3a6b54e3f1c75060ea2
--- /dev/null
+++ b/pfam_gap_rates/PPDK_N.gap.json
@@ -0,0 +1 @@
+{"family": "PPDK_N", "n_seqs": 4468, "length": 463, "gap_rates": [0.6081020590868398, 0.4315129811996419, 0.40465532676812893, 0.39547896150402867, 0.3950313339301701, 0.39435989256938225, 0.39391226499552373, 0.3932408236347359, 0.39301700984780663, 0.39189794091316027, 0.3914503133393017, 0.39279319606087737, 0.39212175470008953, 0.8361683079677709, 0.8462399283795882, 0.8303491495076096, 0.7103849597135183, 0.4075649059982095, 0.4482990152193375, 0.40174574753804837, 0.3833930170098478, 0.38205013428827217, 0.3816025067144136, 0.38048343777976723, 0.38025962399283797, 0.3800358102059087, 0.3800358102059087, 0.3800358102059087, 0.3800358102059087, 0.38048343777976723, 0.38048343777976723, 0.38025962399283797, 0.38025962399283797, 0.38048343777976723, 0.38048343777976723, 0.3807072515666965, 0.38137869292748433, 0.38316920322291853, 0.38943598925693823, 0.3896598030438675, 0.394136078782453, 0.39995523724261417, 0.5987018800358102, 0.9384512085944494, 0.6040734109221128, 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\ No newline at end of file
diff --git a/pfam_gap_rates/PPP5.gap.json b/pfam_gap_rates/PPP5.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..0cda23f8585812896e1e3114c30a30f3f76c07c5
--- /dev/null
+++ b/pfam_gap_rates/PPP5.gap.json
@@ -0,0 +1 @@
+{"family": "PPP5", "n_seqs": 374, "length": 112, "gap_rates": [0.5347593582887701, 0.32887700534759357, 0.2700534759358289, 0.25935828877005346, 0.25935828877005346, 0.25935828877005346, 0.25935828877005346, 0.25935828877005346, 0.25935828877005346, 0.25935828877005346, 0.25668449197860965, 0.2540106951871658, 0.24598930481283424, 0.24064171122994651, 0.24064171122994651, 0.232620320855615, 0.22192513368983957, 0.2192513368983957, 0.21122994652406418, 0.20588235294117646, 0.22994652406417113, 0.9090909090909091, 0.7192513368983957, 0.19518716577540107, 0.1711229946524064, 0.16310160427807488, 0.15508021390374332, 0.1497326203208556, 0.13101604278074866, 0.12032085561497326, 0.11229946524064172, 0.8502673796791443, 0.10427807486631016, 0.9117647058823529, 0.08021390374331551, 0.06684491978609626, 0.040106951871657755, 0.8957219251336899, 0.8636363636363636, 0.05614973262032086, 0.0481283422459893, 0.013368983957219251, 0.016042780748663103, 0.016042780748663103, 0.0106951871657754, 0.013368983957219251, 0.013368983957219251, 0.01871657754010695, 0.0213903743315508, 0.01871657754010695, 0.01871657754010695, 0.786096256684492, 0.8689839572192514, 0.893048128342246, 0.8475935828877005, 0.7540106951871658, 0.5106951871657754, 0.06951871657754011, 0.016042780748663103, 0.9064171122994652, 0.9224598930481284, 0.9331550802139037, 0.9491978609625669, 0.9331550802139037, 0.93048128342246, 0.9144385026737968, 0.9064171122994652, 0.013368983957219251, 0.0106951871657754, 0.008021390374331552, 0.008021390374331552, 0.008021390374331552, 0.008021390374331552, 0.0053475935828877, 0.0053475935828877, 0.0053475935828877, 0.00267379679144385, 0.0053475935828877, 0.0053475935828877, 0.0053475935828877, 0.00267379679144385, 0.0053475935828877, 0.93048128342246, 0.0053475935828877, 0.0106951871657754, 0.008021390374331552, 0.008021390374331552, 0.008021390374331552, 0.008021390374331552, 0.0106951871657754, 0.0106951871657754, 0.013368983957219251, 0.013368983957219251, 0.013368983957219251, 0.016042780748663103, 0.0213903743315508, 0.02406417112299465, 0.02406417112299465, 0.02406417112299465, 0.02406417112299465, 0.02406417112299465, 0.02406417112299465, 0.02406417112299465, 0.02406417112299465, 0.02406417112299465, 0.026737967914438502, 0.029411764705882353, 0.03208556149732621, 0.03208556149732621, 0.07219251336898395, 0.13903743315508021, 0.3342245989304813], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PRA-PH.gap.json b/pfam_gap_rates/PRA-PH.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b255eb6a64c401460347bae10b7e17637582199d
--- /dev/null
+++ b/pfam_gap_rates/PRA-PH.gap.json
@@ -0,0 +1 @@
+{"family": "PRA-PH", "n_seqs": 1834, "length": 94, "gap_rates": [0.8707742639040349, 0.5556161395856052, 0.36205016357688113, 0.2410032715376227, 0.21210468920392583, 0.1777535441657579, 0.15212649945474374, 0.11723009814612868, 0.10959651035986914, 0.0970556161395856, 0.08833151581243184, 0.08342420937840785, 0.08015267175572519, 0.07470010905125408, 0.9383860414394766, 0.07251908396946564, 0.061613958560523444, 0.05888767720828789, 0.05507088331515812, 0.05288985823336968, 0.18429661941112324, 0.04089422028353326, 0.03653217011995638, 0.03435114503816794, 0.03326063249727372, 0.0321701199563795, 0.026717557251908396, 0.016357688113413305, 0.1406761177753544, 0.24318429661941113, 0.14231188658669575, 0.13358778625954199, 0.011995637949836423, 0.009814612868047983, 0.007088331515812432, 0.004907306434023991, 0.004362050163576881, 0.003816793893129771, 0.003271537622682661, 0.003271537622682661, 0.003271537622682661, 0.0027262813522355507, 0.0027262813522355507, 0.0021810250817884407, 0.0021810250817884407, 0.0021810250817884407, 0.0021810250817884407, 0.0027262813522355507, 0.11995637949836423, 0.13140676117775354, 0.12431842966194111, 0.9263904034896401, 0.9296619411123228, 0.9476553980370774, 0.9274809160305344, 0.9018538713195202, 0.009269356597600873, 0.003816793893129771, 0.0016357688113413304, 0.0010905125408942203, 0.0010905125408942203, 0.0010905125408942203, 0.0010905125408942203, 0.0010905125408942203, 0.0010905125408942203, 0.0010905125408942203, 0.0010905125408942203, 0.0010905125408942203, 0.0010905125408942203, 0.0010905125408942203, 0.0016357688113413304, 0.0021810250817884407, 0.0021810250817884407, 0.0016357688113413304, 0.0016357688113413304, 0.0021810250817884407, 0.0021810250817884407, 0.0027262813522355507, 0.004362050163576881, 0.0059978189749182115, 0.011995637949836423, 0.013086150490730643, 0.014176663031624863, 0.014721919302071973, 0.015812431842966195, 0.019629225736095966, 0.027808069792802616, 0.04198473282442748, 0.08233369683751363, 0.16303162486368594, 0.18593238822246455, 0.22955288985823338, 0.29116684841875684, 0.7562704471101418], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PRORP.gap.json b/pfam_gap_rates/PRORP.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..940978dc804c7c75c1ef5a56d2a48b7d7301b51c
--- /dev/null
+++ b/pfam_gap_rates/PRORP.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/PRP21_like_P.gap.json b/pfam_gap_rates/PRP21_like_P.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f22a5bad7c2aa19a4a104248beecca47efe2ba43
--- /dev/null
+++ b/pfam_gap_rates/PRP21_like_P.gap.json
@@ -0,0 +1 @@
+{"family": "PRP21_like_P", "n_seqs": 357, "length": 319, "gap_rates": [0.9047619047619048, 0.6442577030812325, 0.4733893557422969, 0.3445378151260504, 0.2801120448179272, 0.2184873949579832, 0.16806722689075632, 0.15966386554621848, 0.1400560224089636, 0.13445378151260504, 0.13165266106442577, 0.13165266106442577, 0.13165266106442577, 0.13165266106442577, 0.13165266106442577, 0.13165266106442577, 0.13165266106442577, 0.13165266106442577, 0.13165266106442577, 0.13165266106442577, 0.13165266106442577, 0.13165266106442577, 0.13165266106442577, 0.13165266106442577, 0.13445378151260504, 0.13725490196078433, 0.13445378151260504, 0.13725490196078433, 0.13165266106442577, 0.13445378151260504, 0.12885154061624648, 0.13165266106442577, 0.12324929971988796, 0.12324929971988796, 0.12044817927170869, 0.11484593837535013, 0.11484593837535013, 0.11484593837535013, 0.13725490196078433, 0.12885154061624648, 0.12885154061624648, 0.11484593837535013, 0.11484593837535013, 0.11484593837535013, 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\ No newline at end of file
diff --git a/pfam_gap_rates/PRP4.gap.json b/pfam_gap_rates/PRP4.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..feb05882a8cdd74b3e6a47745356c63abdc6aecd
--- /dev/null
+++ b/pfam_gap_rates/PRP4.gap.json
@@ -0,0 +1 @@
+{"family": "PRP4", "n_seqs": 576, "length": 29, "gap_rates": [0.24305555555555555, 0.078125, 0.041666666666666664, 0.012152777777777778, 0.008680555555555556, 0.006944444444444444, 0.005208333333333333, 0.001736111111111111, 0.001736111111111111, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.001736111111111111, 0.003472222222222222, 0.05555555555555555, 0.171875, 0.5], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PSCyt1.gap.json b/pfam_gap_rates/PSCyt1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..bbd8af84e15cfd805c1eeb654dae257fe83cbaa1
--- /dev/null
+++ b/pfam_gap_rates/PSCyt1.gap.json
@@ -0,0 +1 @@
+{"family": "PSCyt1", "n_seqs": 762, "length": 65, "gap_rates": [0.028871391076115485, 0.028871391076115485, 0.003937007874015748, 0.003937007874015748, 0.003937007874015748, 0.003937007874015748, 0.003937007874015748, 0.003937007874015748, 0.005249343832020997, 0.027559055118110236, 0.6771653543307087, 0.6404199475065617, 0.014435695538057743, 0.009186351706036745, 0.005249343832020997, 0.003937007874015748, 0.0013123359580052493, 0.0013123359580052493, 0.0013123359580052493, 0.0013123359580052493, 0.0013123359580052493, 0.0013123359580052493, 0.02099737532808399, 0.02230971128608924, 0.03674540682414698, 0.12467191601049869, 0.9251968503937008, 0.9146981627296588, 0.30708661417322836, 0.28083989501312334, 0.27034120734908135, 0.26246719160104987, 0.21128608923884515, 0.7073490813648294, 0.17191601049868765, 0.15485564304461943, 0.14566929133858267, 0.1377952755905512, 0.11811023622047244, 0.1036745406824147, 0.011811023622047244, 0.003937007874015748, 0.0013123359580052493, 0.011811023622047244, 0.009186351706036745, 0.007874015748031496, 0.007874015748031496, 0.0013123359580052493, 0.0026246719160104987, 0.005249343832020997, 0.006561679790026247, 0.13123359580052493, 0.8976377952755905, 0.045931758530183726, 0.14304461942257218, 0.12467191601049869, 0.03674540682414698, 0.028871391076115485, 0.023622047244094488, 0.024934383202099737, 0.02230971128608924, 0.024934383202099737, 0.1679790026246719, 0.23228346456692914, 0.49606299212598426], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PSCyt3.gap.json b/pfam_gap_rates/PSCyt3.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..6ed8cb42d09da956c6dc69be96448472b7d50172
--- /dev/null
+++ b/pfam_gap_rates/PSCyt3.gap.json
@@ -0,0 +1 @@
+{"family": "PSCyt3", "n_seqs": 305, "length": 106, "gap_rates": [0.1180327868852459, 0.029508196721311476, 0.006557377049180328, 0.006557377049180328, 0.006557377049180328, 0.006557377049180328, 0.006557377049180328, 0.006557377049180328, 0.006557377049180328, 0.006557377049180328, 0.006557377049180328, 0.006557377049180328, 0.006557377049180328, 0.006557377049180328, 0.013114754098360656, 0.029508196721311476, 0.022950819672131147, 0.006557377049180328, 0.003278688524590164, 0.003278688524590164, 0.003278688524590164, 0.003278688524590164, 0.003278688524590164, 0.003278688524590164, 0.003278688524590164, 0.003278688524590164, 0.003278688524590164, 0.003278688524590164, 0.003278688524590164, 0.006557377049180328, 0.003278688524590164, 0.003278688524590164, 0.006557377049180328, 0.006557377049180328, 0.006557377049180328, 0.006557377049180328, 0.006557377049180328, 0.006557377049180328, 0.006557377049180328, 0.022950819672131147, 0.006557377049180328, 0.009836065573770493, 0.013114754098360656, 0.013114754098360656, 0.006557377049180328, 0.940983606557377, 0.8852459016393442, 0.019672131147540985, 0.019672131147540985, 0.05245901639344262, 0.9081967213114754, 0.03934426229508197, 0.029508196721311476, 0.03934426229508197, 0.10163934426229508, 0.08196721311475409, 0.09508196721311475, 0.08852459016393442, 0.7081967213114754, 0.9278688524590164, 0.8885245901639345, 0.6524590163934426, 0.07540983606557378, 0.01639344262295082, 0.013114754098360656, 0.009836065573770493, 0.009836065573770493, 0.006557377049180328, 0.006557377049180328, 0.009836065573770493, 0.006557377049180328, 0.03934426229508197, 0.01639344262295082, 0.006557377049180328, 0.006557377049180328, 0.006557377049180328, 0.006557377049180328, 0.006557377049180328, 0.006557377049180328, 0.009836065573770493, 0.009836065573770493, 0.009836065573770493, 0.009836065573770493, 0.9180327868852459, 0.006557377049180328, 0.009836065573770493, 0.009836065573770493, 0.009836065573770493, 0.009836065573770493, 0.009836065573770493, 0.009836065573770493, 0.009836065573770493, 0.009836065573770493, 0.009836065573770493, 0.009836065573770493, 0.009836065573770493, 0.013114754098360656, 0.013114754098360656, 0.013114754098360656, 0.013114754098360656, 0.019672131147540985, 0.019672131147540985, 0.04262295081967213, 0.06557377049180328, 0.21639344262295082, 0.5704918032786885], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PSD3.gap.json b/pfam_gap_rates/PSD3.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ad960c17f57e6bd5168ac5efe85b581ad414221f
--- /dev/null
+++ b/pfam_gap_rates/PSD3.gap.json
@@ -0,0 +1 @@
+{"family": "PSD3", "n_seqs": 242, "length": 69, "gap_rates": [0.16115702479338842, 0.03305785123966942, 0.02066115702479339, 0.02066115702479339, 0.02066115702479339, 0.02066115702479339, 0.02066115702479339, 0.02066115702479339, 0.02066115702479339, 0.02066115702479339, 0.02066115702479339, 0.02066115702479339, 0.02066115702479339, 0.02066115702479339, 0.02066115702479339, 0.02066115702479339, 0.02066115702479339, 0.028925619834710745, 0.028925619834710745, 0.01652892561983471, 0.8099173553719008, 0.8884297520661157, 0.78099173553719, 0.0743801652892562, 0.0371900826446281, 0.01652892561983471, 0.05785123966942149, 0.004132231404958678, 0.004132231404958678, 0.004132231404958678, 0.004132231404958678, 0.004132231404958678, 0.008264462809917356, 0.004132231404958678, 0.8016528925619835, 0.02066115702479339, 0.012396694214876033, 0.012396694214876033, 0.012396694214876033, 0.012396694214876033, 0.012396694214876033, 0.05371900826446281, 0.04132231404958678, 0.09504132231404959, 0.05371900826446281, 0.049586776859504134, 0.024793388429752067, 0.01652892561983471, 0.012396694214876033, 0.012396694214876033, 0.012396694214876033, 0.012396694214876033, 0.012396694214876033, 0.012396694214876033, 0.012396694214876033, 0.012396694214876033, 0.012396694214876033, 0.012396694214876033, 0.012396694214876033, 0.01652892561983471, 0.02066115702479339, 0.024793388429752067, 0.024793388429752067, 0.024793388429752067, 0.049586776859504134, 0.08264462809917356, 0.1652892561983471, 0.32644628099173556, 0.9297520661157025], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PSD4.gap.json b/pfam_gap_rates/PSD4.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..4ce57eed5693b9dfac25ec29beb487cb0193ddd5
--- /dev/null
+++ b/pfam_gap_rates/PSD4.gap.json
@@ -0,0 +1 @@
+{"family": "PSD4", "n_seqs": 295, "length": 136, "gap_rates": [0.34576271186440677, 0.15932203389830507, 0.08813559322033898, 0.06779661016949153, 0.04745762711864407, 0.04067796610169491, 0.04067796610169491, 0.04067796610169491, 0.03389830508474576, 0.03389830508474576, 0.020338983050847456, 0.01694915254237288, 0.01694915254237288, 0.01694915254237288, 0.01694915254237288, 0.020338983050847456, 0.01694915254237288, 0.01694915254237288, 0.01694915254237288, 0.01694915254237288, 0.01694915254237288, 0.01694915254237288, 0.01694915254237288, 0.020338983050847456, 0.023728813559322035, 0.020338983050847456, 0.01694915254237288, 0.020338983050847456, 0.023728813559322035, 0.02711864406779661, 0.023728813559322035, 0.030508474576271188, 0.023728813559322035, 0.09830508474576272, 0.08135593220338982, 0.030508474576271188, 0.03389830508474576, 0.023728813559322035, 0.023728813559322035, 0.023728813559322035, 0.023728813559322035, 0.020338983050847456, 0.020338983050847456, 0.020338983050847456, 0.020338983050847456, 0.020338983050847456, 0.013559322033898305, 0.01694915254237288, 0.9322033898305084, 0.01694915254237288, 0.013559322033898305, 0.01694915254237288, 0.01694915254237288, 0.01694915254237288, 0.01694915254237288, 0.01694915254237288, 0.01694915254237288, 0.01694915254237288, 0.01694915254237288, 0.020338983050847456, 0.01694915254237288, 0.013559322033898305, 0.013559322033898305, 0.013559322033898305, 0.013559322033898305, 0.013559322033898305, 0.01694915254237288, 0.01694915254237288, 0.020338983050847456, 0.9220338983050848, 0.030508474576271188, 0.04067796610169491, 0.05423728813559322, 0.04406779661016949, 0.04406779661016949, 0.03728813559322034, 0.03389830508474576, 0.04067796610169491, 0.04067796610169491, 0.04745762711864407, 0.0576271186440678, 0.9084745762711864, 0.03728813559322034, 0.03728813559322034, 0.9288135593220339, 0.9457627118644067, 0.9050847457627119, 0.09152542372881356, 0.03728813559322034, 0.03728813559322034, 0.03389830508474576, 0.020338983050847456, 0.01694915254237288, 0.01694915254237288, 0.020338983050847456, 0.013559322033898305, 0.013559322033898305, 0.013559322033898305, 0.013559322033898305, 0.013559322033898305, 0.013559322033898305, 0.013559322033898305, 0.013559322033898305, 0.013559322033898305, 0.013559322033898305, 0.7559322033898305, 0.013559322033898305, 0.013559322033898305, 0.013559322033898305, 0.013559322033898305, 0.013559322033898305, 0.013559322033898305, 0.9152542372881356, 0.01694915254237288, 0.01694915254237288, 0.01694915254237288, 0.01694915254237288, 0.01694915254237288, 0.01694915254237288, 0.020338983050847456, 0.01694915254237288, 0.020338983050847456, 0.023728813559322035, 0.02711864406779661, 0.02711864406779661, 0.02711864406779661, 0.030508474576271188, 0.03389830508474576, 0.05084745762711865, 0.0576271186440678, 0.0576271186440678, 0.0576271186440678, 0.061016949152542375, 0.061016949152542375, 0.08813559322033898, 0.2135593220338983], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PSI_PsaF.gap.json b/pfam_gap_rates/PSI_PsaF.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b40eb3854409d5c399aef04fd1cc30c681d1afcd
--- /dev/null
+++ b/pfam_gap_rates/PSI_PsaF.gap.json
@@ -0,0 +1 @@
+{"family": "PSI_PsaF", "n_seqs": 124, "length": 176, "gap_rates": [0.8548387096774194, 0.8145161290322581, 0.7580645161290323, 0.6854838709677419, 0.6774193548387096, 0.5887096774193549, 0.5645161290322581, 0.532258064516129, 0.5161290322580645, 0.5, 0.5080645161290323, 0.49193548387096775, 0.47580645161290325, 0.49193548387096775, 0.4596774193548387, 0.4596774193548387, 0.4596774193548387, 0.45161290322580644, 0.45161290322580644, 0.45161290322580644, 0.46774193548387094, 0.4596774193548387, 0.45161290322580644, 0.45161290322580644, 0.45161290322580644, 0.45161290322580644, 0.43548387096774194, 0.43548387096774194, 0.43548387096774194, 0.43548387096774194, 0.43548387096774194, 0.43548387096774194, 0.43548387096774194, 0.43548387096774194, 0.43548387096774194, 0.43548387096774194, 0.4435483870967742, 0.4435483870967742, 0.4596774193548387, 0.47580645161290325, 0.47580645161290325, 0.47580645161290325, 0.49193548387096775, 0.5161290322580645, 0.5161290322580645, 0.5080645161290323, 0.5241935483870968, 0.5161290322580645, 0.5161290322580645, 0.5080645161290323, 0.5080645161290323, 0.5080645161290323, 0.5080645161290323, 0.5080645161290323, 0.5080645161290323, 0.5080645161290323, 0.5080645161290323, 0.5161290322580645, 0.5, 0.4596774193548387, 0.43548387096774194, 0.3951612903225806, 0.3870967741935484, 0.3790322580645161, 0.29838709677419356, 0.24193548387096775, 0.14516129032258066, 0.10483870967741936, 0.08870967741935484, 0.08064516129032258, 0.06451612903225806, 0.06451612903225806, 0.06451612903225806, 0.06451612903225806, 0.06451612903225806, 0.06451612903225806, 0.4274193548387097, 0.43548387096774194, 0.10483870967741936, 0.06451612903225806, 0.06451612903225806, 0.06451612903225806, 0.06451612903225806, 0.06451612903225806, 0.06451612903225806, 0.06451612903225806, 0.06451612903225806, 0.06451612903225806, 0.07258064516129033, 0.07258064516129033, 0.07258064516129033, 0.07258064516129033, 0.08064516129032258, 0.9435483870967742, 0.9435483870967742, 0.9435483870967742, 0.9435483870967742, 0.06451612903225806, 0.06451612903225806, 0.07258064516129033, 0.07258064516129033, 0.07258064516129033, 0.07258064516129033, 0.07258064516129033, 0.07258064516129033, 0.07258064516129033, 0.07258064516129033, 0.08064516129032258, 0.08064516129032258, 0.0967741935483871, 0.0967741935483871, 0.0967741935483871, 0.0967741935483871, 0.0967741935483871, 0.0967741935483871, 0.0967741935483871, 0.0967741935483871, 0.0967741935483871, 0.0967741935483871, 0.0967741935483871, 0.0967741935483871, 0.0967741935483871, 0.0967741935483871, 0.0967741935483871, 0.08870967741935484, 0.08870967741935484, 0.08870967741935484, 0.08870967741935484, 0.0967741935483871, 0.0967741935483871, 0.0967741935483871, 0.0967741935483871, 0.0967741935483871, 0.9112903225806451, 0.11290322580645161, 0.0967741935483871, 0.0967741935483871, 0.08870967741935484, 0.08870967741935484, 0.08870967741935484, 0.08870967741935484, 0.0967741935483871, 0.0967741935483871, 0.0967741935483871, 0.0967741935483871, 0.0967741935483871, 0.0967741935483871, 0.0967741935483871, 0.0967741935483871, 0.0967741935483871, 0.0967741935483871, 0.0967741935483871, 0.0967741935483871, 0.0967741935483871, 0.0967741935483871, 0.0967741935483871, 0.0967741935483871, 0.0967741935483871, 0.0967741935483871, 0.0967741935483871, 0.0967741935483871, 0.0967741935483871, 0.0967741935483871, 0.0967741935483871, 0.0967741935483871, 0.10483870967741936, 0.10483870967741936, 0.12096774193548387, 0.12096774193548387, 0.12096774193548387, 0.12096774193548387, 0.12096774193548387, 0.12096774193548387, 0.12096774193548387, 0.1532258064516129, 0.45161290322580644], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PTB.gap.json b/pfam_gap_rates/PTB.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..421fd60f97eb3612a7138a125800bbfa3b192020
--- /dev/null
+++ b/pfam_gap_rates/PTB.gap.json
@@ -0,0 +1 @@
+{"family": "PTB", "n_seqs": 278, "length": 151, "gap_rates": [0.4856115107913669, 0.2446043165467626, 0.16906474820143885, 0.1474820143884892, 0.11870503597122302, 0.10431654676258993, 0.10071942446043165, 0.09352517985611511, 0.09352517985611511, 0.09352517985611511, 0.09352517985611511, 0.08992805755395683, 0.08992805755395683, 0.08992805755395683, 0.08992805755395683, 0.08992805755395683, 0.1510791366906475, 0.07913669064748201, 0.07553956834532374, 0.0683453237410072, 0.0683453237410072, 0.0683453237410072, 0.0683453237410072, 0.34532374100719426, 0.35251798561151076, 0.11510791366906475, 0.1223021582733813, 0.08273381294964029, 0.08273381294964029, 0.08992805755395683, 0.07913669064748201, 0.07553956834532374, 0.06474820143884892, 0.06474820143884892, 0.06474820143884892, 0.06474820143884892, 0.0683453237410072, 0.07553956834532374, 0.0683453237410072, 0.05755395683453238, 0.0539568345323741, 0.05755395683453238, 0.05755395683453238, 0.0539568345323741, 0.0539568345323741, 0.050359712230215826, 0.05755395683453238, 0.046762589928057555, 0.0539568345323741, 0.0539568345323741, 0.0539568345323741, 0.0539568345323741, 0.0539568345323741, 0.0539568345323741, 0.050359712230215826, 0.05755395683453238, 0.06474820143884892, 0.08992805755395683, 0.08633093525179857, 0.07194244604316546, 0.07553956834532374, 0.06115107913669065, 0.5179856115107914, 0.0539568345323741, 0.0539568345323741, 0.0539568345323741, 0.0539568345323741, 0.0539568345323741, 0.0539568345323741, 0.0539568345323741, 0.05755395683453238, 0.05755395683453238, 0.0539568345323741, 0.0539568345323741, 0.06115107913669065, 0.06115107913669065, 0.07194244604316546, 0.08273381294964029, 0.07913669064748201, 0.07913669064748201, 0.9136690647482014, 0.9172661870503597, 0.9136690647482014, 0.07194244604316546, 0.08992805755395683, 0.13309352517985612, 0.13309352517985612, 0.1223021582733813, 0.5935251798561151, 0.60431654676259, 0.6079136690647482, 0.7697841726618705, 0.8237410071942446, 0.8453237410071942, 0.9316546762589928, 0.935251798561151, 0.8920863309352518, 0.8453237410071942, 0.8201438848920863, 0.6942446043165468, 0.6079136690647482, 0.6007194244604317, 0.5899280575539568, 0.09352517985611511, 0.08633093525179857, 0.08633093525179857, 0.08633093525179857, 0.08633093525179857, 0.08633093525179857, 0.08633093525179857, 0.09712230215827339, 0.10431654676258993, 0.1510791366906475, 0.11151079136690648, 0.09352517985611511, 0.09352517985611511, 0.09352517985611511, 0.09352517985611511, 0.09352517985611511, 0.5431654676258992, 0.09352517985611511, 0.09712230215827339, 0.10071942446043165, 0.10071942446043165, 0.5431654676258992, 0.5359712230215827, 0.11151079136690648, 0.11151079136690648, 0.11151079136690648, 0.11870503597122302, 0.11870503597122302, 0.11870503597122302, 0.1223021582733813, 0.12589928057553956, 0.12589928057553956, 0.12949640287769784, 0.13309352517985612, 0.15467625899280577, 0.19424460431654678, 0.2158273381294964, 0.2302158273381295, 0.24820143884892087, 0.29856115107913667, 0.3345323741007194, 0.37410071942446044, 0.4136690647482014, 0.4712230215827338, 0.5143884892086331, 0.6007194244604317, 0.7158273381294964, 0.762589928057554], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PTEN_C2.gap.json b/pfam_gap_rates/PTEN_C2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..9dc637e1e5795ef47644c7bd15acc2ea2f23847c
--- /dev/null
+++ b/pfam_gap_rates/PTEN_C2.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/PTPLA.gap.json b/pfam_gap_rates/PTPLA.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e4230ee5d3f6125c86d89f143753c92c5ecb6cdc
--- /dev/null
+++ b/pfam_gap_rates/PTPLA.gap.json
@@ -0,0 +1 @@
+{"family": "PTPLA", "n_seqs": 560, "length": 169, "gap_rates": [0.22678571428571428, 0.22142857142857142, 0.1875, 0.16785714285714284, 0.15535714285714286, 0.14821428571428572, 0.1375, 0.1375, 0.1375, 0.1375, 0.1357142857142857, 0.13035714285714287, 0.12857142857142856, 0.11964285714285715, 0.11964285714285715, 0.11964285714285715, 0.11964285714285715, 0.11785714285714285, 0.11607142857142858, 0.11428571428571428, 0.10892857142857143, 0.10714285714285714, 0.10714285714285714, 0.10357142857142858, 0.1, 0.09821428571428571, 0.09464285714285714, 0.09285714285714286, 0.09464285714285714, 0.09107142857142857, 0.08035714285714286, 0.07678571428571429, 0.075, 0.07678571428571429, 0.07321428571428572, 0.10535714285714286, 0.07142857142857142, 0.07857142857142857, 0.06785714285714285, 0.06785714285714285, 0.06785714285714285, 0.07142857142857142, 0.06607142857142857, 0.12678571428571428, 0.1357142857142857, 0.09642857142857143, 0.10357142857142858, 0.9107142857142857, 0.7303571428571428, 0.06964285714285715, 0.06428571428571428, 0.05714285714285714, 0.05357142857142857, 0.05357142857142857, 0.05178571428571429, 0.05357142857142857, 0.05178571428571429, 0.048214285714285716, 0.048214285714285716, 0.048214285714285716, 0.044642857142857144, 0.048214285714285716, 0.04285714285714286, 0.04642857142857143, 0.05, 0.048214285714285716, 0.048214285714285716, 0.048214285714285716, 0.05178571428571429, 0.05357142857142857, 0.05178571428571429, 0.05357142857142857, 0.05357142857142857, 0.05357142857142857, 0.9, 0.7375, 0.9446428571428571, 0.09285714285714286, 0.11607142857142858, 0.10714285714285714, 0.0875, 0.0875, 0.05892857142857143, 0.05892857142857143, 0.055357142857142855, 0.055357142857142855, 0.05357142857142857, 0.05178571428571429, 0.05178571428571429, 0.05178571428571429, 0.05357142857142857, 0.055357142857142855, 0.055357142857142855, 0.05178571428571429, 0.05, 0.05178571428571429, 0.05178571428571429, 0.05178571428571429, 0.05, 0.05, 0.048214285714285716, 0.05178571428571429, 0.9464285714285714, 0.05357142857142857, 0.05714285714285714, 0.05714285714285714, 0.05714285714285714, 0.05714285714285714, 0.05892857142857143, 0.0625, 0.060714285714285714, 0.060714285714285714, 0.06607142857142857, 0.06785714285714285, 0.07321428571428572, 0.07142857142857142, 0.07857142857142857, 0.15535714285714286, 0.16785714285714284, 0.18571428571428572, 0.3821428571428571, 0.36607142857142855, 0.36428571428571427, 0.36607142857142855, 0.36607142857142855, 0.3732142857142857, 0.3767857142857143, 0.425, 0.40714285714285714, 0.36607142857142855, 0.3196428571428571, 0.28214285714285714, 0.21071428571428572, 0.1125, 0.09464285714285714, 0.09285714285714286, 0.08392857142857142, 0.08214285714285714, 0.08035714285714286, 0.08392857142857142, 0.08214285714285714, 0.08392857142857142, 0.9071428571428571, 0.08571428571428572, 0.08571428571428572, 0.08571428571428572, 0.08571428571428572, 0.0875, 0.08928571428571429, 0.08928571428571429, 0.09107142857142857, 0.10178571428571428, 0.11071428571428571, 0.11785714285714285, 0.11964285714285715, 0.12321428571428572, 0.12857142857142856, 0.1357142857142857, 0.14285714285714285, 0.14285714285714285, 0.15, 0.15535714285714286, 0.15535714285714286, 0.1625, 0.18214285714285713, 0.18928571428571428, 0.20892857142857144, 0.3, 0.9089285714285714], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PTPS_related.gap.json b/pfam_gap_rates/PTPS_related.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..88131c54329284298fa9425ae045e7c2d83dec97
--- /dev/null
+++ b/pfam_gap_rates/PTPS_related.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/PTS_2-RNA.gap.json b/pfam_gap_rates/PTS_2-RNA.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..78260c3725e9dae919915f24d8e4cc7e04df0f34
--- /dev/null
+++ b/pfam_gap_rates/PTS_2-RNA.gap.json
@@ -0,0 +1 @@
+{"family": "PTS_2-RNA", "n_seqs": 612, "length": 236, "gap_rates": [0.6470588235294118, 0.477124183006536, 0.2647058823529412, 0.17647058823529413, 0.15359477124183007, 0.1454248366013072, 0.1454248366013072, 0.1437908496732026, 0.13562091503267973, 0.12908496732026145, 0.12908496732026145, 0.12581699346405228, 0.12581699346405228, 0.12581699346405228, 0.12581699346405228, 0.12745098039215685, 0.12091503267973856, 0.12908496732026145, 0.12254901960784313, 0.12254901960784313, 0.12091503267973856, 0.119281045751634, 0.11601307189542484, 0.10130718954248366, 0.09967320261437909, 0.10130718954248366, 0.09640522875816994, 0.09640522875816994, 0.09803921568627451, 0.09803921568627451, 0.09803921568627451, 0.09967320261437909, 0.10130718954248366, 0.10457516339869281, 0.10294117647058823, 0.09967320261437909, 0.09803921568627451, 0.19934640522875818, 0.184640522875817, 0.9395424836601307, 0.9444444444444444, 0.9444444444444444, 0.9444444444444444, 0.9395424836601307, 0.14052287581699346, 0.14052287581699346, 0.15849673202614378, 0.15522875816993464, 0.36437908496732024, 0.2957516339869281, 0.8235294117647058, 0.9166666666666666, 0.8627450980392157, 0.795751633986928, 0.09477124183006536, 0.09313725490196079, 0.0915032679738562, 0.0915032679738562, 0.08986928104575163, 0.08496732026143791, 0.08169934640522876, 0.08169934640522876, 0.08006535947712418, 0.08006535947712418, 0.08006535947712418, 0.0784313725490196, 0.08169934640522876, 0.07679738562091504, 0.07516339869281045, 0.07352941176470588, 0.07352941176470588, 0.07516339869281045, 0.07516339869281045, 0.25326797385620914, 0.20098039215686275, 0.7450980392156863, 0.23039215686274508, 0.12908496732026145, 0.7352941176470589, 0.7696078431372549, 0.7892156862745098, 0.8186274509803921, 0.8447712418300654, 0.8725490196078431, 0.8937908496732027, 0.9199346405228758, 0.9297385620915033, 0.9313725490196079, 0.9411764705882353, 0.9428104575163399, 0.9428104575163399, 0.9444444444444444, 0.946078431372549, 0.946078431372549, 0.946078431372549, 0.9444444444444444, 0.9428104575163399, 0.9411764705882353, 0.9362745098039216, 0.9297385620915033, 0.9248366013071896, 0.9150326797385621, 0.8758169934640523, 0.8660130718954249, 0.8349673202614379, 0.7990196078431373, 0.7777777777777778, 0.7598039215686274, 0.6977124183006536, 0.1454248366013072, 0.3137254901960784, 0.6928104575163399, 0.08823529411764706, 0.0784313725490196, 0.07026143790849673, 0.07026143790849673, 0.07026143790849673, 0.07352941176470588, 0.0784313725490196, 0.08169934640522876, 0.08006535947712418, 0.0784313725490196, 0.1568627450980392, 0.9362745098039216, 0.36764705882352944, 0.4738562091503268, 0.6062091503267973, 0.5261437908496732, 0.4068627450980392, 0.4950980392156863, 0.2908496732026144, 0.3333333333333333, 0.2647058823529412, 0.1388888888888889, 0.12418300653594772, 0.1111111111111111, 0.24019607843137256, 0.8774509803921569, 0.22058823529411764, 0.20915032679738563, 0.2565359477124183, 0.20098039215686275, 0.2973856209150327, 0.3235294117647059, 0.17647058823529413, 0.10620915032679738, 0.2565359477124183, 0.08006535947712418, 0.08006535947712418, 0.08006535947712418, 0.08006535947712418, 0.08006535947712418, 0.08006535947712418, 0.0784313725490196, 0.0784313725490196, 0.08006535947712418, 0.08006535947712418, 0.0784313725490196, 0.08006535947712418, 0.08006535947712418, 0.08169934640522876, 0.795751633986928, 0.08333333333333333, 0.08660130718954248, 0.08496732026143791, 0.08496732026143791, 0.08169934640522876, 0.08333333333333333, 0.07516339869281045, 0.07516339869281045, 0.07516339869281045, 0.07516339869281045, 0.07679738562091504, 0.07679738562091504, 0.07516339869281045, 0.07352941176470588, 0.07352941176470588, 0.07352941176470588, 0.07516339869281045, 0.10784313725490197, 0.1650326797385621, 0.5098039215686274, 0.46568627450980393, 0.22712418300653595, 0.12745098039215685, 0.9215686274509803, 0.9362745098039216, 0.9411764705882353, 0.9428104575163399, 0.9477124183006536, 0.9477124183006536, 0.9428104575163399, 0.9379084967320261, 0.9330065359477124, 0.8954248366013072, 0.08986928104575163, 0.09313725490196079, 0.08333333333333333, 0.08169934640522876, 0.0784313725490196, 0.08333333333333333, 0.0784313725490196, 0.9330065359477124, 0.08169934640522876, 0.08169934640522876, 0.08006535947712418, 0.08006535947712418, 0.08006535947712418, 0.0784313725490196, 0.07679738562091504, 0.07679738562091504, 0.07679738562091504, 0.0784313725490196, 0.0784313725490196, 0.0784313725490196, 0.08006535947712418, 0.0784313725490196, 0.08333333333333333, 0.08823529411764706, 0.08986928104575163, 0.9313725490196079, 0.08660130718954248, 0.08823529411764706, 0.0915032679738562, 0.09313725490196079, 0.10457516339869281, 0.10620915032679738, 0.10947712418300654, 0.11274509803921569, 0.10947712418300654, 0.11274509803921569, 0.11764705882352941, 0.119281045751634, 0.15196078431372548, 0.2957516339869281, 0.5212418300653595], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PTS_IIA.gap.json b/pfam_gap_rates/PTS_IIA.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..de04bee7eba4a2692c02a947b194ac6541f6981d
--- /dev/null
+++ b/pfam_gap_rates/PTS_IIA.gap.json
@@ -0,0 +1 @@
+{"family": "PTS_IIA", "n_seqs": 585, "length": 94, "gap_rates": [0.7247863247863248, 0.15555555555555556, 0.035897435897435895, 0.02905982905982906, 0.02564102564102564, 0.023931623931623933, 0.022222222222222223, 0.022222222222222223, 0.022222222222222223, 0.022222222222222223, 0.022222222222222223, 0.020512820512820513, 0.020512820512820513, 0.020512820512820513, 0.020512820512820513, 0.020512820512820513, 0.020512820512820513, 0.018803418803418803, 0.018803418803418803, 0.018803418803418803, 0.018803418803418803, 0.018803418803418803, 0.018803418803418803, 0.018803418803418803, 0.020512820512820513, 0.020512820512820513, 0.023931623931623933, 0.020512820512820513, 0.020512820512820513, 0.020512820512820513, 0.020512820512820513, 0.020512820512820513, 0.020512820512820513, 0.020512820512820513, 0.020512820512820513, 0.015384615384615385, 0.015384615384615385, 0.017094017094017096, 0.015384615384615385, 0.015384615384615385, 0.015384615384615385, 0.018803418803418803, 0.018803418803418803, 0.018803418803418803, 0.017094017094017096, 0.017094017094017096, 0.018803418803418803, 0.018803418803418803, 0.015384615384615385, 0.013675213675213675, 0.015384615384615385, 0.015384615384615385, 0.011965811965811967, 0.011965811965811967, 0.013675213675213675, 0.011965811965811967, 0.011965811965811967, 0.015384615384615385, 0.02564102564102564, 0.023931623931623933, 0.020512820512820513, 0.018803418803418803, 0.020512820512820513, 0.017094017094017096, 0.015384615384615385, 0.015384615384615385, 0.015384615384615385, 0.015384615384615385, 0.017094017094017096, 0.017094017094017096, 0.018803418803418803, 0.017094017094017096, 0.017094017094017096, 0.017094017094017096, 0.017094017094017096, 0.017094017094017096, 0.017094017094017096, 0.018803418803418803, 0.018803418803418803, 0.018803418803418803, 0.018803418803418803, 0.018803418803418803, 0.018803418803418803, 0.020512820512820513, 0.020512820512820513, 0.020512820512820513, 0.020512820512820513, 0.020512820512820513, 0.020512820512820513, 0.020512820512820513, 0.03076923076923077, 0.037606837606837605, 0.07521367521367521, 0.28034188034188035], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PaaSYMP.gap.json b/pfam_gap_rates/PaaSYMP.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..dee66d922c0134262728364396c09150a6d60f0f
--- /dev/null
+++ b/pfam_gap_rates/PaaSYMP.gap.json
@@ -0,0 +1 @@
+{"family": "PaaSYMP", "n_seqs": 113, "length": 167, "gap_rates": [0.23893805309734514, 0.1504424778761062, 0.1504424778761062, 0.1504424778761062, 0.1504424778761062, 0.1504424778761062, 0.1504424778761062, 0.1415929203539823, 0.1415929203539823, 0.1415929203539823, 0.1415929203539823, 0.1415929203539823, 0.1415929203539823, 0.1415929203539823, 0.13274336283185842, 0.13274336283185842, 0.13274336283185842, 0.13274336283185842, 0.13274336283185842, 0.13274336283185842, 0.13274336283185842, 0.13274336283185842, 0.8672566371681416, 0.13274336283185842, 0.1504424778761062, 0.1592920353982301, 0.13274336283185842, 0.8672566371681416, 0.9380530973451328, 0.9469026548672567, 0.9292035398230089, 0.7787610619469026, 0.13274336283185842, 0.13274336283185842, 0.13274336283185842, 0.13274336283185842, 0.13274336283185842, 0.13274336283185842, 0.13274336283185842, 0.13274336283185842, 0.13274336283185842, 0.13274336283185842, 0.13274336283185842, 0.1415929203539823, 0.1415929203539823, 0.13274336283185842, 0.9380530973451328, 0.18584070796460178, 0.13274336283185842, 0.12389380530973451, 0.11504424778761062, 0.11504424778761062, 0.11504424778761062, 0.11504424778761062, 0.11504424778761062, 0.11504424778761062, 0.10619469026548672, 0.10619469026548672, 0.09734513274336283, 0.09734513274336283, 0.07964601769911504, 0.07964601769911504, 0.07964601769911504, 0.07964601769911504, 0.07964601769911504, 0.07964601769911504, 0.07964601769911504, 0.07964601769911504, 0.07964601769911504, 0.07964601769911504, 0.07964601769911504, 0.07964601769911504, 0.9380530973451328, 0.9469026548672567, 0.9469026548672567, 0.9469026548672567, 0.9469026548672567, 0.9380530973451328, 0.9203539823008849, 0.09734513274336283, 0.09734513274336283, 0.09734513274336283, 0.09734513274336283, 0.07964601769911504, 0.08849557522123894, 0.07964601769911504, 0.07964601769911504, 0.07964601769911504, 0.07964601769911504, 0.07964601769911504, 0.07079646017699115, 0.07079646017699115, 0.04424778761061947, 0.04424778761061947, 0.04424778761061947, 0.035398230088495575, 0.035398230088495575, 0.035398230088495575, 0.035398230088495575, 0.035398230088495575, 0.04424778761061947, 0.04424778761061947, 0.04424778761061947, 0.04424778761061947, 0.04424778761061947, 0.04424778761061947, 0.05309734513274336, 0.061946902654867256, 0.061946902654867256, 0.061946902654867256, 0.07079646017699115, 0.061946902654867256, 0.07079646017699115, 0.061946902654867256, 0.07964601769911504, 0.08849557522123894, 0.08849557522123894, 0.08849557522123894, 0.08849557522123894, 0.08849557522123894, 0.08849557522123894, 0.08849557522123894, 0.08849557522123894, 0.08849557522123894, 0.08849557522123894, 0.08849557522123894, 0.08849557522123894, 0.08849557522123894, 0.08849557522123894, 0.08849557522123894, 0.08849557522123894, 0.08849557522123894, 0.08849557522123894, 0.08849557522123894, 0.08849557522123894, 0.08849557522123894, 0.08849557522123894, 0.08849557522123894, 0.09734513274336283, 0.09734513274336283, 0.10619469026548672, 0.10619469026548672, 0.10619469026548672, 0.10619469026548672, 0.10619469026548672, 0.12389380530973451, 0.12389380530973451, 0.12389380530973451, 0.12389380530973451, 0.12389380530973451, 0.13274336283185842, 0.13274336283185842, 0.13274336283185842, 0.1415929203539823, 0.1415929203539823, 0.1415929203539823, 0.1504424778761062, 0.1592920353982301, 0.168141592920354, 0.168141592920354, 0.18584070796460178, 0.18584070796460178, 0.19469026548672566, 0.20353982300884957, 0.23008849557522124, 0.23893805309734514, 0.34513274336283184], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Paired_CXXCH_1.gap.json b/pfam_gap_rates/Paired_CXXCH_1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..fc8278847d7f5dbec6edad3ffb5c55123b9c1106
--- /dev/null
+++ b/pfam_gap_rates/Paired_CXXCH_1.gap.json
@@ -0,0 +1 @@
+{"family": "Paired_CXXCH_1", "n_seqs": 999, "length": 62, "gap_rates": [0.5815815815815816, 0.5735735735735735, 0.4984984984984985, 0.4644644644644645, 0.42542542542542544, 0.3483483483483483, 0.27627627627627627, 0.9479479479479479, 0.15715715715715717, 0.9229229229229229, 0.9009009009009009, 0.0, 0.0, 0.0, 0.0, 0.0, 0.948948948948949, 0.0, 0.0, 0.001001001001001001, 0.005005005005005005, 0.003003003003003003, 0.928928928928929, 0.07007007007007007, 0.05105105105105105, 0.04104104104104104, 0.03303303303303303, 0.003003003003003003, 0.01001001001001001, 0.7587587587587588, 0.7927927927927928, 0.8278278278278278, 0.8498498498498499, 0.8768768768768769, 0.9159159159159159, 0.9379379379379379, 0.9469469469469469, 0.9419419419419419, 0.9259259259259259, 0.8848848848848849, 0.8588588588588588, 0.8398398398398398, 0.8088088088088088, 0.7767767767767768, 0.7047047047047047, 0.48148148148148145, 0.037037037037037035, 0.024024024024024024, 0.01901901901901902, 0.024024024024024024, 0.024024024024024024, 0.024024024024024024, 0.024024024024024024, 0.024024024024024024, 0.024024024024024024, 0.024024024024024024, 0.025025025025025027, 0.025025025025025027, 0.05005005005005005, 0.13613613613613615, 0.3833833833833834, 0.7067067067067067], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/ParBc.gap.json b/pfam_gap_rates/ParBc.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..87e722c298bd75be6324385a7b6a21b8db9b699d
--- /dev/null
+++ b/pfam_gap_rates/ParBc.gap.json
@@ -0,0 +1 @@
+{"family": "ParBc", "n_seqs": 4740, "length": 105, "gap_rates": [0.570464135021097, 0.2272151898734177, 0.15738396624472573, 0.1320675105485232, 0.12320675105485232, 0.11687763713080168, 0.1120253164556962, 0.10886075949367088, 0.1618143459915612, 0.10548523206751055, 0.0890295358649789, 0.08185654008438818, 0.07763713080168777, 0.070042194092827, 0.06455696202531645, 0.09071729957805907, 0.0879746835443038, 0.9267932489451477, 0.27257383966244725, 0.10907172995780591, 0.035443037974683546, 0.029957805907172997, 0.0270042194092827, 0.025949367088607594, 0.02362869198312236, 0.02088607594936709, 0.017932489451476793, 0.016666666666666666, 0.015189873417721518, 0.014556962025316455, 0.014135021097046414, 0.014135021097046414, 0.028481012658227847, 0.012869198312236287, 0.011603375527426161, 0.009282700421940928, 0.008016877637130802, 0.00590717299578059, 0.00590717299578059, 0.005485232067510549, 0.005485232067510549, 0.005274261603375527, 0.005063291139240506, 0.005274261603375527, 0.005063291139240506, 0.028481012658227847, 0.7753164556962026, 0.899367088607595, 0.9419831223628692, 0.929957805907173, 0.8666666666666667, 0.7031645569620253, 0.39219409282700424, 0.11983122362869199, 0.11729957805907174, 0.06413502109704641, 0.005485232067510549, 0.0037974683544303796, 0.0033755274261603376, 0.0033755274261603376, 0.0033755274261603376, 0.004008438818565401, 0.004219409282700422, 0.004219409282700422, 0.004430379746835443, 0.004641350210970464, 0.004852320675105486, 0.005485232067510549, 0.006540084388185654, 0.007172995780590718, 0.007383966244725738, 0.01181434599156118, 0.8951476793248945, 0.9052742616033755, 0.9310126582278481, 0.9489451476793249, 0.9086497890295359, 0.9033755274261603, 0.8881856540084389, 0.052953586497890295, 0.022151898734177215, 0.02362869198312236, 0.024894514767932488, 0.02531645569620253, 0.02679324894514768, 0.03059071729957806, 0.03375527426160337, 0.03776371308016878, 0.04388185654008439, 0.056118143459915615, 0.06772151898734177, 0.8470464135021097, 0.12362869198312236, 0.13945147679324896, 0.1379746835443038, 0.14831223628691984, 0.15970464135021098, 0.18080168776371308, 0.1978902953586498, 0.21329113924050633, 0.2289029535864979, 0.24430379746835443, 0.2567510548523207, 0.2780590717299578, 0.7618143459915612], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Pectate_lyase.gap.json b/pfam_gap_rates/Pectate_lyase.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..294c0c340e95ba8eda2363c8cc1f21cd849c4f32
--- /dev/null
+++ b/pfam_gap_rates/Pectate_lyase.gap.json
@@ -0,0 +1 @@
+{"family": "Pectate_lyase", "n_seqs": 366, "length": 210, "gap_rates": [0.7978142076502732, 0.41530054644808745, 0.26229508196721313, 0.19672131147540983, 0.17486338797814208, 0.1721311475409836, 0.16120218579234974, 0.13387978142076504, 0.1284153005464481, 0.9180327868852459, 0.12295081967213115, 0.12295081967213115, 0.12021857923497267, 0.11475409836065574, 0.11202185792349727, 0.1092896174863388, 0.1092896174863388, 0.10382513661202186, 0.10109289617486339, 0.10109289617486339, 0.10109289617486339, 0.4672131147540984, 0.4726775956284153, 0.1092896174863388, 0.09562841530054644, 0.09562841530054644, 0.09289617486338798, 0.09289617486338798, 0.08469945355191257, 0.08469945355191257, 0.08743169398907104, 0.08469945355191257, 0.08469945355191257, 0.10655737704918032, 0.13934426229508196, 0.12568306010928962, 0.48360655737704916, 0.08196721311475409, 0.07650273224043716, 0.07650273224043716, 0.07650273224043716, 0.1284153005464481, 0.07650273224043716, 0.07103825136612021, 0.06830601092896176, 0.06830601092896176, 0.08469945355191257, 0.08469945355191257, 0.06830601092896176, 0.06830601092896176, 0.06557377049180328, 0.06557377049180328, 0.06557377049180328, 0.06557377049180328, 0.06557377049180328, 0.06284153005464481, 0.07923497267759563, 0.06284153005464481, 0.06284153005464481, 0.06284153005464481, 0.05737704918032787, 0.05737704918032787, 0.05737704918032787, 0.05737704918032787, 0.060109289617486336, 0.06830601092896176, 0.07377049180327869, 0.06830601092896176, 0.05737704918032787, 0.060109289617486336, 0.0546448087431694, 0.060109289617486336, 0.05737704918032787, 0.060109289617486336, 0.06284153005464481, 0.8278688524590164, 0.060109289617486336, 0.060109289617486336, 0.05737704918032787, 0.05737704918032787, 0.060109289617486336, 0.05737704918032787, 0.0546448087431694, 0.0546448087431694, 0.05737704918032787, 0.05737704918032787, 0.05737704918032787, 0.05737704918032787, 0.05737704918032787, 0.06284153005464481, 0.06284153005464481, 0.06830601092896176, 0.06830601092896176, 0.06284153005464481, 0.060109289617486336, 0.060109289617486336, 0.060109289617486336, 0.05737704918032787, 0.3879781420765027, 0.08469945355191257, 0.2540983606557377, 0.28688524590163933, 0.07923497267759563, 0.6475409836065574, 0.06284153005464481, 0.05737704918032787, 0.05737704918032787, 0.05737704918032787, 0.05737704918032787, 0.060109289617486336, 0.060109289617486336, 0.060109289617486336, 0.06284153005464481, 0.06284153005464481, 0.060109289617486336, 0.060109289617486336, 0.05737704918032787, 0.05737704918032787, 0.0546448087431694, 0.05737704918032787, 0.060109289617486336, 0.060109289617486336, 0.060109289617486336, 0.06284153005464481, 0.06284153005464481, 0.06284153005464481, 0.06284153005464481, 0.06284153005464481, 0.06284153005464481, 0.06557377049180328, 0.06557377049180328, 0.06830601092896176, 0.06830601092896176, 0.07103825136612021, 0.07103825136612021, 0.07103825136612021, 0.06830601092896176, 0.06830601092896176, 0.07103825136612021, 0.07377049180327869, 0.07377049180327869, 0.07923497267759563, 0.08469945355191257, 0.08743169398907104, 0.08196721311475409, 0.08196721311475409, 0.08196721311475409, 0.08196721311475409, 0.07923497267759563, 0.08196721311475409, 0.1448087431693989, 0.2814207650273224, 0.7923497267759563, 0.08743169398907104, 0.08743169398907104, 0.08196721311475409, 0.08196721311475409, 0.08196721311475409, 0.08469945355191257, 0.08743169398907104, 0.08743169398907104, 0.08743169398907104, 0.08743169398907104, 0.08469945355191257, 0.08469945355191257, 0.08469945355191257, 0.08469945355191257, 0.7349726775956285, 0.1366120218579235, 0.1284153005464481, 0.09289617486338798, 0.08743169398907104, 0.08743169398907104, 0.09836065573770492, 0.09562841530054644, 0.09562841530054644, 0.09289617486338798, 0.09289617486338798, 0.09289617486338798, 0.09289617486338798, 0.09289617486338798, 0.09289617486338798, 0.09289617486338798, 0.09289617486338798, 0.09562841530054644, 0.09836065573770492, 0.6284153005464481, 0.5956284153005464, 0.12295081967213115, 0.12021857923497267, 0.12021857923497267, 0.12295081967213115, 0.12295081967213115, 0.1284153005464481, 0.14207650273224043, 0.13934426229508196, 0.3251366120218579, 0.3087431693989071, 0.9180327868852459, 0.8934426229508197, 0.18032786885245902, 0.16120218579234974, 0.16393442622950818, 0.17759562841530055, 0.18579234972677597, 0.19398907103825136, 0.27595628415300544, 0.4180327868852459, 0.644808743169399, 0.8306010928961749], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Pentapeptide.gap.json b/pfam_gap_rates/Pentapeptide.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..423de3f6e1e4a4d4b98b109bb0084897b80f6d68
--- /dev/null
+++ b/pfam_gap_rates/Pentapeptide.gap.json
@@ -0,0 +1 @@
+{"family": "Pentapeptide", "n_seqs": 5000, "length": 40, "gap_rates": [0.4916, 0.3138, 0.2078, 0.1846, 0.1396, 0.1054, 0.0696, 0.0506, 0.044, 0.0322, 0.0244, 0.0152, 0.011, 0.0094, 0.008, 0.0052, 0.0038, 0.0026, 0.0024, 0.0022, 0.0022, 0.0018, 0.0022, 0.0034, 0.0032, 0.0048, 0.0084, 0.0104, 0.018, 0.0244, 0.0328, 0.0484, 0.0556, 0.0734, 0.0964, 0.1178, 0.1776, 0.2154, 0.4154, 0.6168], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Pentapeptide_2.gap.json b/pfam_gap_rates/Pentapeptide_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..69ea9ea5988cda484a050dd51034491926cf49b3
--- /dev/null
+++ b/pfam_gap_rates/Pentapeptide_2.gap.json
@@ -0,0 +1 @@
+{"family": "Pentapeptide_2", "n_seqs": 856, "length": 40, "gap_rates": [0.5864485981308412, 0.21495327102803738, 0.10397196261682243, 0.07710280373831775, 0.05841121495327103, 0.008177570093457943, 0.0011682242990654205, 0.0011682242990654205, 0.0011682242990654205, 0.0011682242990654205, 0.0011682242990654205, 0.0011682242990654205, 0.0011682242990654205, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0011682242990654205, 0.0011682242990654205, 0.0, 0.0, 0.0, 0.0011682242990654205, 0.0035046728971962616, 0.004672897196261682, 0.004672897196261682, 0.009345794392523364, 0.016355140186915886, 0.02336448598130841, 0.04088785046728972, 0.07710280373831775, 0.11098130841121495, 0.6425233644859814], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PepSY.gap.json b/pfam_gap_rates/PepSY.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..9855154392e799870a55c1c715bf4d5979175633
--- /dev/null
+++ b/pfam_gap_rates/PepSY.gap.json
@@ -0,0 +1 @@
+{"family": "PepSY", "n_seqs": 1376, "length": 80, "gap_rates": [0.7587209302325582, 0.24781976744186046, 0.17950581395348839, 0.14026162790697674, 0.10392441860465117, 0.07122093023255814, 0.05886627906976744, 0.053052325581395346, 0.04869186046511628, 0.04433139534883721, 0.03997093023255814, 0.03343023255813953, 0.03488372093023256, 0.029796511627906978, 0.8008720930232558, 0.8473837209302325, 0.9055232558139535, 0.9469476744186046, 0.8713662790697675, 0.8386627906976745, 0.78125, 0.04142441860465116, 0.027616279069767442, 0.02180232558139535, 0.02180232558139535, 0.8117732558139535, 0.02180232558139535, 0.029796511627906978, 0.027616279069767442, 0.01744186046511628, 0.015261627906976744, 0.015261627906976744, 0.015988372093023256, 0.028343023255813952, 0.05232558139534884, 0.6409883720930233, 0.7965116279069767, 0.8953488372093024, 0.9382267441860465, 0.9302325581395349, 0.84375, 0.7587209302325582, 0.016715116279069766, 0.015261627906976744, 0.010174418604651164, 0.00944767441860465, 0.0007267441860465116, 0.0, 0.0007267441860465116, 0.002180232558139535, 0.0029069767441860465, 0.9280523255813954, 0.00436046511627907, 0.005813953488372093, 0.23982558139534885, 0.9302325581395349, 0.8343023255813954, 0.7238372093023255, 0.7085755813953488, 0.32994186046511625, 0.00944767441860465, 0.007267441860465116, 0.015988372093023256, 0.015261627906976744, 0.012354651162790697, 0.00944767441860465, 0.13517441860465115, 0.13226744186046513, 0.006540697674418605, 0.00872093023255814, 0.012354651162790697, 0.018168604651162792, 0.021075581395348836, 0.02616279069767442, 0.04433139534883721, 0.0690406976744186, 0.12281976744186046, 0.22020348837209303, 0.47674418604651164, 0.8662790697674418], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PepSY_2.gap.json b/pfam_gap_rates/PepSY_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..9f9a0127ef22c0c5923e9d013727034516c4534a
--- /dev/null
+++ b/pfam_gap_rates/PepSY_2.gap.json
@@ -0,0 +1 @@
+{"family": "PepSY_2", "n_seqs": 281, "length": 95, "gap_rates": [0.604982206405694, 0.40213523131672596, 0.3309608540925267, 0.2491103202846975, 0.2277580071174377, 0.21708185053380782, 0.19217081850533807, 0.18149466192170818, 0.16725978647686832, 0.17437722419928825, 0.16725978647686832, 0.896797153024911, 0.1494661921708185, 0.15302491103202848, 0.15658362989323843, 0.15658362989323843, 0.15302491103202848, 0.8220640569395018, 0.9217081850533808, 0.9323843416370107, 0.8754448398576512, 0.7900355871886121, 0.5516014234875445, 0.3487544483985765, 0.3167259786476868, 0.27402135231316727, 0.22419928825622776, 0.17437722419928825, 0.13523131672597866, 0.12099644128113879, 0.1103202846975089, 0.1103202846975089, 0.08896797153024912, 0.07829181494661921, 0.099644128113879, 0.1103202846975089, 0.021352313167259787, 0.010676156583629894, 0.0071174377224199285, 0.0035587188612099642, 0.0071174377224199285, 0.0035587188612099642, 0.0, 0.0, 0.0, 0.0, 0.9145907473309609, 0.0, 0.0071174377224199285, 0.0, 0.5622775800711743, 0.0, 0.0, 0.0035587188612099642, 0.0, 0.0035587188612099642, 0.0035587188612099642, 0.0035587188612099642, 0.17437722419928825, 0.0071174377224199285, 0.0071174377224199285, 0.5373665480427047, 0.0071174377224199285, 0.9288256227758007, 0.9466192170818505, 0.900355871886121, 0.0035587188612099642, 0.0035587188612099642, 0.0035587188612099642, 0.0035587188612099642, 0.9430604982206405, 0.1387900355871886, 0.014234875444839857, 0.0035587188612099642, 0.0035587188612099642, 0.0035587188612099642, 0.0035587188612099642, 0.0035587188612099642, 0.0071174377224199285, 0.0071174377224199285, 0.0071174377224199285, 0.0071174377224199285, 0.0071174377224199285, 0.0071174377224199285, 0.0071174377224199285, 0.02491103202846975, 0.046263345195729534, 0.0711743772241993, 0.08896797153024912, 0.099644128113879, 0.14590747330960854, 0.19217081850533807, 0.28825622775800713, 0.5088967971530249, 0.8327402135231317], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PepSY_like.gap.json b/pfam_gap_rates/PepSY_like.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..aa5fa86a1c6bc1c9273acc52518e363e059ae77b
--- /dev/null
+++ b/pfam_gap_rates/PepSY_like.gap.json
@@ -0,0 +1 @@
+{"family": "PepSY_like", "n_seqs": 346, "length": 104, "gap_rates": [0.9046242774566474, 0.569364161849711, 0.49710982658959535, 0.4653179190751445, 0.4393063583815029, 0.42485549132947975, 0.4161849710982659, 0.407514450867052, 0.40173410404624277, 0.37572254335260113, 0.7341040462427746, 0.7630057803468208, 0.7312138728323699, 0.36127167630057805, 0.3554913294797688, 0.3554913294797688, 0.3554913294797688, 0.3468208092485549, 0.3439306358381503, 0.3439306358381503, 0.34104046242774566, 0.3439306358381503, 0.3439306358381503, 0.34104046242774566, 0.34104046242774566, 0.32947976878612717, 0.3179190751445087, 0.31213872832369943, 0.6242774566473989, 0.5375722543352601, 0.5, 0.13005780346820808, 0.09826589595375723, 0.07514450867052024, 0.9479768786127167, 0.06936416184971098, 0.06647398843930635, 0.05202312138728324, 0.04046242774566474, 0.9450867052023122, 0.9479768786127167, 0.9450867052023122, 0.028901734104046242, 0.02601156069364162, 0.017341040462427744, 0.011560693641618497, 0.002890173410404624, 0.002890173410404624, 0.002890173410404624, 0.002890173410404624, 0.0, 0.0, 0.0, 0.0, 0.8641618497109826, 0.002890173410404624, 0.002890173410404624, 0.017341040462427744, 0.6734104046242775, 0.9364161849710982, 0.6878612716763006, 0.653179190751445, 0.014450867052023121, 0.008670520231213872, 0.008670520231213872, 0.02601156069364162, 0.02023121387283237, 0.023121387283236993, 0.028901734104046242, 0.028901734104046242, 0.031791907514450865, 0.03468208092485549, 0.684971098265896, 0.9161849710982659, 0.8757225433526011, 0.523121387283237, 0.049132947976878616, 0.05491329479768786, 0.057803468208092484, 0.06069364161849711, 0.06647398843930635, 0.07225433526011561, 0.08092485549132948, 0.08959537572254335, 0.0953757225433526, 0.5578034682080925, 0.8670520231213873, 0.9277456647398844, 0.5809248554913294, 0.5346820809248555, 0.11271676300578035, 0.13872832369942195, 0.12427745664739884, 0.1329479768786127, 0.13872832369942195, 0.13872832369942195, 0.15606936416184972, 0.17630057803468208, 0.1907514450867052, 0.20809248554913296, 0.22254335260115607, 0.2630057803468208, 0.37572254335260113, 0.8179190751445087], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Peptidase_A17.gap.json b/pfam_gap_rates/Peptidase_A17.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..5eb47a1c232423d0c7060ab860965b6ded7ebd6f
--- /dev/null
+++ b/pfam_gap_rates/Peptidase_A17.gap.json
@@ -0,0 +1 @@
+{"family": "Peptidase_A17", "n_seqs": 1285, "length": 169, "gap_rates": [0.3914396887159533, 0.3463035019455253, 0.3424124513618677, 0.3377431906614786, 0.33229571984435796, 0.32684824902723736, 0.3229571984435798, 0.32062256809338524, 0.3175097276264591, 0.311284046692607, 0.3050583657587549, 0.3042801556420233, 0.3035019455252918, 0.3019455252918288, 0.3019455252918288, 0.29571984435797666, 0.2926070038910506, 0.28715953307392994, 0.2856031128404669, 0.28171206225680934, 0.2754863813229572, 0.2723735408560311, 0.26926070038910505, 0.26926070038910505, 0.26459143968871596, 0.2622568093385214, 0.2607003891050584, 0.25914396887159535, 0.25992217898832687, 0.25214007782101167, 0.2552529182879377, 0.245136186770428, 0.2389105058365759, 0.24124513618677043, 0.24280155642023346, 0.24591439688715952, 0.24202334630350195, 0.2443579766536965, 0.24669260700389106, 0.2482490272373541, 0.2443579766536965, 0.24591439688715952, 0.24591439688715952, 0.24591439688715952, 0.24591439688715952, 0.2443579766536965, 0.24280155642023346, 0.24280155642023346, 0.24280155642023346, 0.245136186770428, 0.2529182879377432, 0.25603112840466924, 0.25914396887159535, 0.2607003891050584, 0.25836575875486384, 0.26381322957198444, 0.266147859922179, 0.26459143968871596, 0.267704280155642, 0.26848249027237353, 0.26848249027237353, 0.42957198443579764, 0.29027237354085605, 0.2747081712062257, 0.27626459143968873, 0.2669260700389105, 0.26381322957198444, 0.2607003891050584, 0.2622568093385214, 0.26459143968871596, 0.266147859922179, 0.2715953307392996, 0.8785992217898833, 0.8178988326848249, 0.6093385214007782, 0.4155642023346304, 0.3151750972762646, 0.2964980544747082, 0.2848249027237354, 0.266147859922179, 0.2536964980544747, 0.2490272373540856, 0.24591439688715952, 0.24591439688715952, 0.2443579766536965, 0.24046692607003892, 0.2443579766536965, 0.2443579766536965, 0.24357976653696498, 0.24357976653696498, 0.24747081712062258, 0.2490272373540856, 0.2490272373540856, 0.24591439688715952, 0.24669260700389106, 0.24591439688715952, 0.24124513618677043, 0.24357976653696498, 0.24669260700389106, 0.25680933852140075, 0.27003891050583656, 0.28249027237354085, 0.28326848249027237, 0.3042801556420233, 0.533852140077821, 0.4038910505836576, 0.37120622568093387, 0.3642023346303502, 0.3416342412451362, 0.29416342412451363, 0.28326848249027237, 0.2801556420233463, 0.2723735408560311, 0.2723735408560311, 0.2723735408560311, 0.25758754863813227, 0.25758754863813227, 0.25603112840466924, 0.2482490272373541, 0.24980544747081712, 0.2529182879377432, 0.2490272373540856, 0.24669260700389106, 0.24591439688715952, 0.2536964980544747, 0.9073929961089494, 0.9424124513618677, 0.8023346303501946, 0.2536964980544747, 0.2490272373540856, 0.25136186770428015, 0.2536964980544747, 0.2536964980544747, 0.25680933852140075, 0.25836575875486384, 0.25914396887159535, 0.2622568093385214, 0.26381322957198444, 0.266147859922179, 0.267704280155642, 0.26848249027237353, 0.27003891050583656, 0.2739299610894942, 0.2793774319066148, 0.28326848249027237, 0.2856031128404669, 0.2863813229571984, 0.2918287937743191, 0.30038910505836575, 0.3050583657587549, 0.3105058365758755, 0.31984435797665367, 0.32684824902723736, 0.3330739299610895, 0.3431906614785992, 0.842023346303502, 0.824124513618677, 0.35797665369649806, 0.37120622568093387, 0.3782101167315175, 0.3867704280155642, 0.3922178988326848, 0.3953307392996109, 0.3992217898832685, 0.4031128404669261, 0.40700389105058365, 0.41167315175097274, 0.4155642023346304, 0.4591439688715953], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Peptidase_A4.gap.json b/pfam_gap_rates/Peptidase_A4.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..5e2f6de261797455169eb32f1cc157c539ff67ef
--- /dev/null
+++ b/pfam_gap_rates/Peptidase_A4.gap.json
@@ -0,0 +1 @@
+{"family": "Peptidase_A4", "n_seqs": 290, "length": 239, "gap_rates": [0.6448275862068965, 0.27586206896551724, 0.19310344827586207, 0.18275862068965518, 0.17586206896551723, 0.17586206896551723, 0.1793103448275862, 0.18275862068965518, 0.17586206896551723, 0.1724137931034483, 0.5827586206896552, 0.5586206896551724, 0.8793103448275862, 0.7275862068965517, 0.1793103448275862, 0.1413793103448276, 0.1310344827586207, 0.11724137931034483, 0.1103448275862069, 0.1103448275862069, 0.1103448275862069, 0.10689655172413794, 0.10689655172413794, 0.10689655172413794, 0.10689655172413794, 0.1, 0.1, 0.1, 0.1, 0.18620689655172415, 0.20344827586206896, 0.18275862068965518, 0.1896551724137931, 0.15172413793103448, 0.11379310344827587, 0.13793103448275862, 0.28620689655172415, 0.4103448275862069, 0.9310344827586207, 0.9413793103448276, 0.9206896551724137, 0.4689655172413793, 0.4482758620689655, 0.3482758620689655, 0.2620689655172414, 0.8896551724137931, 0.09310344827586207, 0.09310344827586207, 0.09310344827586207, 0.09310344827586207, 0.08275862068965517, 0.08275862068965517, 0.08275862068965517, 0.0896551724137931, 0.09310344827586207, 0.6517241379310345, 0.6448275862068965, 0.8931034482758621, 0.2655172413793103, 0.4206896551724138, 0.2482758620689655, 0.16896551724137931, 0.15517241379310345, 0.9344827586206896, 0.09310344827586207, 0.1103448275862069, 0.08620689655172414, 0.08275862068965517, 0.07931034482758621, 0.07586206896551724, 0.07586206896551724, 0.08275862068965517, 0.07931034482758621, 0.08275862068965517, 0.10689655172413794, 0.10344827586206896, 0.9172413793103448, 0.7034482758620689, 0.22758620689655173, 0.19310344827586207, 0.2103448275862069, 0.9379310344827586, 0.0896551724137931, 0.0896551724137931, 0.08620689655172414, 0.08620689655172414, 0.07931034482758621, 0.07931034482758621, 0.07586206896551724, 0.07586206896551724, 0.07586206896551724, 0.08620689655172414, 0.07586206896551724, 0.8758620689655172, 0.7862068965517242, 0.07586206896551724, 0.07586206896551724, 0.06896551724137931, 0.06896551724137931, 0.08275862068965517, 0.1, 0.0896551724137931, 0.1482758620689655, 0.8931034482758621, 0.12413793103448276, 0.06896551724137931, 0.06206896551724138, 0.05517241379310345, 0.05517241379310345, 0.04827586206896552, 0.04827586206896552, 0.04482758620689655, 0.04482758620689655, 0.04482758620689655, 0.041379310344827586, 0.03793103448275862, 0.03793103448275862, 0.03793103448275862, 0.03793103448275862, 0.034482758620689655, 0.034482758620689655, 0.04827586206896552, 0.04482758620689655, 0.9310344827586207, 0.06551724137931035, 0.041379310344827586, 0.03793103448275862, 0.041379310344827586, 0.03793103448275862, 0.04482758620689655, 0.041379310344827586, 0.05172413793103448, 0.05172413793103448, 0.04482758620689655, 0.04482758620689655, 0.03793103448275862, 0.03793103448275862, 0.03793103448275862, 0.041379310344827586, 0.041379310344827586, 0.041379310344827586, 0.03793103448275862, 0.034482758620689655, 0.034482758620689655, 0.034482758620689655, 0.08620689655172414, 0.12413793103448276, 0.8, 0.9275862068965517, 0.9206896551724137, 0.6482758620689655, 0.3931034482758621, 0.15172413793103448, 0.1103448275862069, 0.04827586206896552, 0.03793103448275862, 0.9482758620689655, 0.03793103448275862, 0.03793103448275862, 0.03793103448275862, 0.03793103448275862, 0.03793103448275862, 0.03793103448275862, 0.03793103448275862, 0.03793103448275862, 0.041379310344827586, 0.07586206896551724, 0.07241379310344828, 0.8517241379310345, 0.9344827586206896, 0.903448275862069, 0.7965517241379311, 0.1413793103448276, 0.19655172413793104, 0.16206896551724137, 0.2413793103448276, 0.10344827586206896, 0.07931034482758621, 0.04482758620689655, 0.04482758620689655, 0.041379310344827586, 0.041379310344827586, 0.041379310344827586, 0.04482758620689655, 0.04482758620689655, 0.04482758620689655, 0.04482758620689655, 0.04827586206896552, 0.05517241379310345, 0.0896551724137931, 0.06206896551724138, 0.06551724137931035, 0.07241379310344828, 0.1, 0.11379310344827587, 0.12413793103448276, 0.10689655172413794, 0.10689655172413794, 0.9344827586206896, 0.593103448275862, 0.15517241379310345, 0.16206896551724137, 0.14482758620689656, 0.13793103448275862, 0.14482758620689656, 0.15172413793103448, 0.16896551724137931, 0.9275862068965517, 0.16206896551724137, 0.16551724137931034, 0.16551724137931034, 0.17586206896551723, 0.9275862068965517, 0.20344827586206896, 0.2103448275862069, 0.803448275862069, 0.21724137931034482, 0.2206896551724138, 0.23448275862068965, 0.25517241379310346, 0.9413793103448276, 0.8827586206896552, 0.24482758620689654, 0.2482758620689655, 0.2413793103448276, 0.24482758620689654, 0.2482758620689655, 0.2482758620689655, 0.2620689655172414, 0.2896551724137931, 0.2896551724137931, 0.29310344827586204, 0.30344827586206896, 0.7103448275862069, 0.3413793103448276, 0.3586206896551724, 0.3689655172413793, 0.42758620689655175, 0.5655172413793104], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Peptidase_C13.gap.json b/pfam_gap_rates/Peptidase_C13.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..8ce7c726275a75936d984ec211cef43280eeec81
--- /dev/null
+++ b/pfam_gap_rates/Peptidase_C13.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Peptidase_C78.gap.json b/pfam_gap_rates/Peptidase_C78.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f8ebb2b736900749262c2a03fc2b2e8b0ab283eb
--- /dev/null
+++ b/pfam_gap_rates/Peptidase_C78.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Peptidase_M19.gap.json b/pfam_gap_rates/Peptidase_M19.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..027a46634715e002e5fb05b4086f1c8e3c1b8825
--- /dev/null
+++ b/pfam_gap_rates/Peptidase_M19.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Peptidase_M28.gap.json b/pfam_gap_rates/Peptidase_M28.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e3bc9c090b55d6c52ec781ec06b59e2252f1fe59
--- /dev/null
+++ b/pfam_gap_rates/Peptidase_M28.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Peptidase_M4.gap.json b/pfam_gap_rates/Peptidase_M4.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ac786e10308b13ff42ad237cde8c1572072b56d3
--- /dev/null
+++ b/pfam_gap_rates/Peptidase_M4.gap.json
@@ -0,0 +1 @@
+{"family": "Peptidase_M4", "n_seqs": 538, "length": 180, "gap_rates": [0.828996282527881, 0.5483271375464684, 0.5111524163568774, 0.49256505576208176, 0.483271375464684, 0.4758364312267658, 0.4739776951672863, 0.4721189591078067, 0.4628252788104089, 0.9052044609665427, 0.45724907063197023, 0.4516728624535316, 0.44052044609665425, 0.43308550185873607, 0.42936802973977695, 0.4312267657992565, 0.42379182156133827, 0.4368029739776952, 0.4368029739776952, 0.8996282527881041, 0.43866171003717475, 0.4200743494423792, 0.41263940520446096, 0.40892193308550184, 0.4033457249070632, 0.4033457249070632, 0.39776951672862454, 0.3940520446096654, 0.38661710037174724, 0.379182156133829, 0.37732342007434944, 0.4888475836431227, 0.5539033457249071, 0.879182156133829, 0.9275092936802974, 0.949814126394052, 0.9368029739776952, 0.8884758364312267, 0.758364312267658, 0.5204460966542751, 0.33643122676579923, 0.3066914498141264, 0.275092936802974, 0.26394052044609667, 0.25650557620817843, 0.25092936802973975, 0.24907063197026022, 0.25650557620817843, 0.26394052044609667, 0.2732342007434944, 0.4684014869888476, 0.6728624535315985, 0.6561338289962825, 0.5464684014869888, 0.7973977695167286, 0.8234200743494424, 0.8903345724907064, 0.9368029739776952, 0.912639405204461, 0.8736059479553904, 0.8159851301115242, 0.7806691449814126, 0.45724907063197023, 0.4795539033457249, 0.34014869888475835, 0.2825278810408922, 0.25092936802973975, 0.20817843866171004, 0.19888475836431227, 0.19516728624535315, 0.18401486988847585, 0.1821561338289963, 0.17472118959107807, 0.17472118959107807, 0.17286245353159851, 0.17657992565055763, 0.18029739776951673, 0.3847583643122677, 0.3996282527881041, 0.3215613382899628, 0.6840148698884758, 0.70817843866171, 0.9460966542750929, 0.9405204460966543, 0.7026022304832714, 0.6561338289962825, 0.22862453531598512, 0.17657992565055763, 0.15427509293680297, 0.14869888475836432, 0.1449814126394052, 0.06319702602230483, 0.949814126394052, 0.05390334572490706, 0.05762081784386617, 0.05390334572490706, 0.046468401486988845, 0.04275092936802974, 0.040892193308550186, 0.040892193308550186, 0.040892193308550186, 0.040892193308550186, 0.040892193308550186, 0.040892193308550186, 0.040892193308550186, 0.03903345724907063, 0.04460966542750929, 0.03717472118959108, 0.03345724907063197, 0.031598513011152414, 0.031598513011152414, 0.027881040892193308, 0.027881040892193308, 0.027881040892193308, 0.026022304832713755, 0.11895910780669144, 0.12453531598513011, 0.11338289962825279, 0.026022304832713755, 0.026022304832713755, 0.026022304832713755, 0.024163568773234202, 0.024163568773234202, 0.024163568773234202, 0.020446096654275093, 0.020446096654275093, 0.022304832713754646, 0.895910780669145, 0.9256505576208178, 0.9423791821561338, 0.8977695167286245, 0.8921933085501859, 0.09851301115241635, 0.08921933085501858, 0.9237918215613383, 0.9163568773234201, 0.020446096654275093, 0.022304832713754646, 0.020446096654275093, 0.01858736059479554, 0.01858736059479554, 0.016728624535315983, 0.01858736059479554, 0.020446096654275093, 0.022304832713754646, 0.022304832713754646, 0.7434944237918215, 0.7304832713754646, 0.022304832713754646, 0.011152416356877323, 0.011152416356877323, 0.011152416356877323, 0.011152416356877323, 0.011152416356877323, 0.01858736059479554, 0.03903345724907063, 0.36617100371747213, 0.3159851301115242, 0.14312267657992564, 0.19330855018587362, 0.19144981412639406, 0.0687732342007435, 0.06691449814126393, 0.05762081784386617, 0.01858736059479554, 0.01858736059479554, 0.01858736059479554, 0.016728624535315983, 0.01858736059479554, 0.01858736059479554, 0.01858736059479554, 0.01858736059479554, 0.01858736059479554, 0.01858736059479554, 0.01858736059479554, 0.01858736059479554, 0.01858736059479554, 0.01858736059479554, 0.09293680297397769, 0.2732342007434944], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Peptidase_M50.gap.json b/pfam_gap_rates/Peptidase_M50.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..1bc0c556d8b880d6c54dddb6204efd04845b3cab
--- /dev/null
+++ b/pfam_gap_rates/Peptidase_M50.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Peptidase_M6.gap.json b/pfam_gap_rates/Peptidase_M6.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d0fc3fe1a51d768f54567cece4f8eb76d43ae827
--- /dev/null
+++ b/pfam_gap_rates/Peptidase_M6.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Peptidase_S9.gap.json b/pfam_gap_rates/Peptidase_S9.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..66cee91052b0471fc50edc8cd31cb3f281dd75ad
--- /dev/null
+++ b/pfam_gap_rates/Peptidase_S9.gap.json
@@ -0,0 +1 @@
+{"family": "Peptidase_S9", "n_seqs": 5000, "length": 239, "gap_rates": [0.8658, 0.7526, 0.6398, 0.5996, 0.8666, 0.5324, 0.4744, 0.4154, 0.3432, 0.291, 0.2666, 0.4284, 0.2464, 0.2442, 0.2416, 0.2392, 0.2378, 0.2364, 0.2358, 0.2352, 0.2344, 0.2338, 0.2328, 0.2322, 0.2316, 0.2314, 0.231, 0.2444, 0.2472, 0.2466, 0.2442, 0.2426, 0.2434, 0.2382, 0.2306, 0.2508, 0.2326, 0.227, 0.2222, 0.2152, 0.2094, 0.2034, 0.1964, 0.1896, 0.1794, 0.1658, 0.1562, 0.146, 0.1388, 0.1262, 0.11, 0.1046, 0.1004, 0.0968, 0.0946, 0.0934, 0.0994, 0.0958, 0.094, 0.0918, 0.8078, 0.0914, 0.0886, 0.103, 0.0926, 0.079, 0.0748, 0.0726, 0.0718, 0.0714, 0.071, 0.0716, 0.0716, 0.0718, 0.072, 0.0712, 0.0714, 0.072, 0.072, 0.0722, 0.0722, 0.0726, 0.073, 0.0736, 0.0734, 0.9198, 0.2876, 0.0846, 0.0792, 0.0806, 0.0796, 0.0886, 0.0764, 0.0764, 0.076, 0.0762, 0.076, 0.0786, 0.0782, 0.0796, 0.081, 0.0836, 0.084, 0.0858, 0.0862, 0.0862, 0.087, 0.088, 0.0898, 0.0902, 0.3718, 0.4938, 0.4288, 0.752, 0.8778, 0.9358, 0.949, 0.9192, 0.8168, 0.5502, 0.113, 0.1232, 0.1184, 0.5888, 0.135, 0.1194, 0.1132, 0.1034, 0.1602, 0.109, 0.1088, 0.1396, 0.493, 0.2622, 0.8962, 0.8716, 0.1268, 0.106, 0.0902, 0.1128, 0.0896, 0.1624, 0.087, 0.0792, 0.0746, 0.0726, 0.0706, 0.0708, 0.0704, 0.0722, 0.0764, 0.0782, 0.5624, 0.5122, 0.693, 0.9164, 0.9478, 0.9298, 0.8158, 0.6102, 0.0634, 0.057, 0.0556, 0.0544, 0.0542, 0.053, 0.0542, 0.053, 0.0538, 0.0538, 0.0538, 0.0548, 0.0562, 0.0568, 0.0576, 0.0586, 0.0652, 0.062, 0.0614, 0.0616, 0.0614, 0.0616, 0.0616, 0.0618, 0.0628, 0.0644, 0.0652, 0.073, 0.075, 0.7886, 0.9262, 0.9452, 0.8966, 0.7752, 0.079, 0.1008, 0.097, 0.0956, 0.0862, 0.7958, 0.0852, 0.0858, 0.0866, 0.0876, 0.0884, 0.0914, 0.099, 0.094, 0.0976, 0.095, 0.0948, 0.944, 0.9358, 0.1182, 0.1224, 0.1286, 0.2308, 0.2076, 0.1726, 0.1734, 0.1738, 0.176, 0.7524, 0.183, 0.1858, 0.1894, 0.1912, 0.1952, 0.2004, 0.2036, 0.207, 0.2088, 0.214, 0.2286, 0.2526, 0.3002, 0.3772, 0.5664, 0.901], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Peptidase_U32_C.gap.json b/pfam_gap_rates/Peptidase_U32_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..bc59547b62b852ee5b53549edcb05dffcb1bfb29
--- /dev/null
+++ b/pfam_gap_rates/Peptidase_U32_C.gap.json
@@ -0,0 +1 @@
+{"family": "Peptidase_U32_C", "n_seqs": 787, "length": 86, "gap_rates": [0.7306226175349428, 0.2744599745870394, 0.11435832274459974, 0.06607369758576874, 0.044472681067344345, 0.03430749682337993, 0.030495552731893267, 0.029224904701397714, 0.029224904701397714, 0.029224904701397714, 0.03176620076238882, 0.026683608640406607, 0.02795425667090216, 0.03303684879288437, 0.5273189326556544, 0.13850063532401524, 0.09911054637865312, 0.01397712833545108, 0.010165184243964422, 0.008894536213468869, 0.007623888182973317, 0.0063532401524777635, 0.0063532401524777635, 0.0063532401524777635, 0.0063532401524777635, 0.005082592121982211, 0.0038119440914866584, 0.0038119440914866584, 0.0038119440914866584, 0.0038119440914866584, 0.005082592121982211, 0.005082592121982211, 0.0038119440914866584, 0.0038119440914866584, 0.0038119440914866584, 0.0, 0.0, 0.0, 0.007623888182973317, 0.0038119440914866584, 0.27573062261753495, 0.0012706480304955528, 0.0, 0.0, 0.0, 0.0012706480304955528, 0.0, 0.0, 0.0, 0.0, 0.020330368487928845, 0.0063532401524777635, 0.9263024142312579, 0.0025412960609911056, 0.0025412960609911056, 0.0025412960609911056, 0.0038119440914866584, 0.005082592121982211, 0.0025412960609911056, 0.0025412960609911056, 0.0025412960609911056, 0.0025412960609911056, 0.10292249047013977, 0.0025412960609911056, 0.020330368487928845, 0.005082592121982211, 0.0038119440914866584, 0.005082592121982211, 0.005082592121982211, 0.0063532401524777635, 0.0063532401524777635, 0.008894536213468869, 0.05590851334180432, 0.9263024142312579, 0.029224904701397714, 0.8449809402795425, 0.045743329097839895, 0.053367217280813214, 0.06480304955527319, 0.07623888182973317, 0.09148665819567979, 0.10038119440914867, 0.11435832274459974, 0.1207115628970775, 0.13850063532401524, 0.21092757306226176], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Peripla_BP_1.gap.json b/pfam_gap_rates/Peripla_BP_1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..51bd3a917b658c6352898e64fdc01c3f93769a16
--- /dev/null
+++ b/pfam_gap_rates/Peripla_BP_1.gap.json
@@ -0,0 +1 @@
+{"family": "Peripla_BP_1", "n_seqs": 1150, "length": 299, "gap_rates": [0.9191304347826087, 0.4834782608695652, 0.25130434782608696, 0.10782608695652174, 0.09826086956521739, 0.09304347826086956, 0.08695652173913043, 0.08347826086956522, 0.08260869565217391, 0.0791304347826087, 0.07565217391304348, 0.9434782608695652, 0.06173913043478261, 0.051304347826086956, 0.050434782608695654, 0.04521739130434783, 0.04173913043478261, 0.03826086956521739, 0.03391304347826087, 0.028695652173913042, 0.023478260869565216, 0.022608695652173914, 0.020869565217391306, 0.02, 0.02, 0.02, 0.02, 0.02, 0.02, 0.019130434782608695, 0.019130434782608695, 0.019130434782608695, 0.02, 0.02434782608695652, 0.023478260869565216, 0.022608695652173914, 0.023478260869565216, 0.021739130434782608, 0.018260869565217393, 0.019130434782608695, 0.02, 0.02, 0.020869565217391306, 0.02, 0.02, 0.017391304347826087, 0.013043478260869565, 0.18869565217391304, 0.010434782608695653, 0.010434782608695653, 0.009565217391304347, 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\ No newline at end of file
diff --git a/pfam_gap_rates/Phage_AlpA.gap.json b/pfam_gap_rates/Phage_AlpA.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..99cfa2669c6e7002de10bd245d8293f10cc107cf
--- /dev/null
+++ b/pfam_gap_rates/Phage_AlpA.gap.json
@@ -0,0 +1 @@
+{"family": "Phage_AlpA", "n_seqs": 481, "length": 52, "gap_rates": [0.7671517671517671, 0.4386694386694387, 0.1891891891891892, 0.15176715176715178, 0.12474012474012475, 0.11226611226611227, 0.09355509355509356, 0.08731808731808732, 0.08108108108108109, 0.07484407484407485, 0.060291060291060294, 0.035343035343035345, 0.02702702702702703, 0.016632016632016633, 0.014553014553014554, 0.010395010395010396, 0.006237006237006237, 0.006237006237006237, 0.006237006237006237, 0.004158004158004158, 0.004158004158004158, 0.004158004158004158, 0.004158004158004158, 0.002079002079002079, 0.002079002079002079, 0.9334719334719335, 0.002079002079002079, 0.002079002079002079, 0.002079002079002079, 0.0, 0.004158004158004158, 0.004158004158004158, 0.006237006237006237, 0.006237006237006237, 0.006237006237006237, 0.008316008316008316, 0.008316008316008316, 0.016632016632016633, 0.016632016632016633, 0.008316008316008316, 0.02286902286902287, 0.02286902286902287, 0.010395010395010396, 0.010395010395010396, 0.012474012474012475, 0.014553014553014554, 0.016632016632016633, 0.02079002079002079, 0.04365904365904366, 0.08731808731808732, 0.17255717255717257, 0.26403326403326405], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Phage_GPD.gap.json b/pfam_gap_rates/Phage_GPD.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..2281c1bbeedc653b0e724e73500c6575b26825be
--- /dev/null
+++ b/pfam_gap_rates/Phage_GPD.gap.json
@@ -0,0 +1 @@
+{"family": "Phage_GPD", "n_seqs": 1054, "length": 388, "gap_rates": [0.706831119544592, 0.50853889943074, 0.4696394686907021, 0.4620493358633776, 0.4601518026565465, 0.45161290322580644, 0.43548387096774194, 0.42125237191650855, 0.4127134724857685, 0.4098671726755218, 0.40417457305502846, 0.4032258064516129, 0.40227703984819735, 0.42125237191650855, 0.42125237191650855, 0.9478178368121443, 0.9222011385199241, 0.4297912713472486, 0.39753320683111953, 0.3946869070208729, 0.43453510436432635, 0.38235294117647056, 0.3766603415559772, 0.3719165085388994, 0.36148007590132825, 0.3519924098671727, 0.3387096774193548, 0.31024667931688804, 0.2855787476280835, 0.26091081593927895, 0.25616698292220114, 0.2476280834914611, 0.2428842504743833, 0.24003795066413663, 0.23434535104364326, 0.23055028462998103, 0.22675521821631878, 0.2685009487666034, 0.3045540796963947, 0.29791271347248577, 0.8377609108159393, 0.8975332068311196, 0.9364326375711575, 0.9430740037950665, 0.9459203036053131, 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\ No newline at end of file
diff --git a/pfam_gap_rates/Phage_H_T_join.gap.json b/pfam_gap_rates/Phage_H_T_join.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..2ca6a5f395769a6c2eb4ede9f37c152e13387d59
--- /dev/null
+++ b/pfam_gap_rates/Phage_H_T_join.gap.json
@@ -0,0 +1 @@
+{"family": "Phage_H_T_join", "n_seqs": 427, "length": 112, "gap_rates": [0.49414519906323184, 0.22950819672131148, 0.18501170960187355, 0.13114754098360656, 0.11943793911007025, 0.1053864168618267, 0.09601873536299765, 0.38875878220140514, 0.10304449648711944, 0.08665105386416862, 0.6346604215456675, 0.08196721311475409, 0.06088992974238876, 0.053864168618266976, 0.053864168618266976, 0.0936768149882904, 0.9437939110070258, 0.0585480093676815, 0.04449648711943794, 0.04215456674473068, 0.04449648711943794, 0.04449648711943794, 0.9203747072599532, 0.05152224824355972, 0.03981264637002342, 0.936768149882904, 0.0702576112412178, 0.0585480093676815, 0.04918032786885246, 0.03278688524590164, 0.03044496487119438, 0.01405152224824356, 0.9391100702576113, 0.01405152224824356, 0.01405152224824356, 0.01405152224824356, 0.01405152224824356, 0.01405152224824356, 0.00936768149882904, 0.0117096018735363, 0.00468384074941452, 0.00468384074941452, 0.00468384074941452, 0.00468384074941452, 0.00468384074941452, 0.00936768149882904, 0.9133489461358314, 0.01405152224824356, 0.00936768149882904, 0.00936768149882904, 0.00936768149882904, 0.00936768149882904, 0.00936768149882904, 0.00702576112412178, 0.00468384074941452, 0.00702576112412178, 0.06088992974238876, 0.00468384074941452, 0.00468384074941452, 0.00468384074941452, 0.00234192037470726, 0.00234192037470726, 0.00234192037470726, 0.00468384074941452, 0.00702576112412178, 0.00468384074941452, 0.00468384074941452, 0.6229508196721312, 0.892271662763466, 0.8969555035128806, 0.7611241217798594, 0.6088992974238876, 0.01873536299765808, 0.00468384074941452, 0.9016393442622951, 0.9391100702576113, 0.8618266978922716, 0.00468384074941452, 0.00702576112412178, 0.00936768149882904, 0.00936768149882904, 0.00936768149882904, 0.00936768149882904, 0.00936768149882904, 0.9484777517564403, 0.9461358313817331, 0.00936768149882904, 0.0117096018735363, 0.0117096018735363, 0.0117096018735363, 0.0117096018735363, 0.0117096018735363, 0.0117096018735363, 0.0117096018735363, 0.0117096018735363, 0.0117096018735363, 0.8782201405152225, 0.0117096018735363, 0.01639344262295082, 0.02107728337236534, 0.03278688524590164, 0.04449648711943794, 0.2693208430913349, 0.11241217798594848, 0.09133489461358314, 0.08196721311475409, 0.0936768149882904, 0.11943793911007025, 0.1358313817330211, 0.1686182669789227, 0.2646370023419204, 0.4379391100702576], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Phage_TAC_5.gap.json b/pfam_gap_rates/Phage_TAC_5.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ba1d6aba8f5240d3bfc46e207e0809f51b43b431
--- /dev/null
+++ b/pfam_gap_rates/Phage_TAC_5.gap.json
@@ -0,0 +1 @@
+{"family": "Phage_TAC_5", "n_seqs": 133, "length": 150, "gap_rates": [0.6466165413533834, 0.42105263157894735, 0.3533834586466165, 0.3007518796992481, 0.2857142857142857, 0.2631578947368421, 0.2631578947368421, 0.3157894736842105, 0.3308270676691729, 0.8872180451127819, 0.3684210526315789, 0.3157894736842105, 0.2857142857142857, 0.20300751879699247, 0.19548872180451127, 0.18796992481203006, 0.18796992481203006, 0.23308270676691728, 0.20300751879699247, 0.19548872180451127, 0.19548872180451127, 0.20300751879699247, 0.20300751879699247, 0.20300751879699247, 0.3157894736842105, 0.5639097744360902, 0.49624060150375937, 0.42105263157894735, 0.41353383458646614, 0.40601503759398494, 0.3684210526315789, 0.17293233082706766, 0.16541353383458646, 0.16541353383458646, 0.15789473684210525, 0.15789473684210525, 0.15037593984962405, 0.15037593984962405, 0.14285714285714285, 0.13533834586466165, 0.12781954887218044, 0.13533834586466165, 0.13533834586466165, 0.13533834586466165, 0.12781954887218044, 0.12781954887218044, 0.12781954887218044, 0.13533834586466165, 0.12781954887218044, 0.14285714285714285, 0.14285714285714285, 0.13533834586466165, 0.15037593984962405, 0.15037593984962405, 0.16541353383458646, 0.2857142857142857, 0.5037593984962406, 0.9323308270676691, 0.19548872180451127, 0.15789473684210525, 0.16541353383458646, 0.17293233082706766, 0.6390977443609023, 0.924812030075188, 0.8646616541353384, 0.6015037593984962, 0.48872180451127817, 0.3233082706766917, 0.21052631578947367, 0.15789473684210525, 0.14285714285714285, 0.12781954887218044, 0.10526315789473684, 0.08270676691729323, 0.05263157894736842, 0.05263157894736842, 0.03759398496240601, 0.022556390977443608, 0.015037593984962405, 0.007518796992481203, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.015037593984962405, 0.015037593984962405, 0.8345864661654135, 0.849624060150376, 0.9473684210526315, 0.8421052631578947, 0.8345864661654135, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.007518796992481203, 0.015037593984962405, 0.0, 0.0, 0.0, 0.0, 0.0, 0.007518796992481203, 0.0, 0.0, 0.8270676691729323, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.015037593984962405, 0.03759398496240601, 0.03759398496240601, 0.924812030075188, 0.13533834586466165, 0.12030075187969924, 0.15037593984962405, 0.14285714285714285, 0.14285714285714285, 0.13533834586466165, 0.9473684210526315, 0.3458646616541353, 0.24812030075187969, 0.2556390977443609, 0.24812030075187969, 0.2631578947368421, 0.3082706766917293], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Phage_holin_1.gap.json b/pfam_gap_rates/Phage_holin_1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f76e147a0387fdd919b9485bdec15bcfb892dc98
--- /dev/null
+++ b/pfam_gap_rates/Phage_holin_1.gap.json
@@ -0,0 +1 @@
+{"family": "Phage_holin_1", "n_seqs": 106, "length": 90, "gap_rates": [0.330188679245283, 0.3113207547169811, 0.3113207547169811, 0.2830188679245283, 0.24528301886792453, 0.2169811320754717, 0.20754716981132076, 0.18867924528301888, 0.18867924528301888, 0.16981132075471697, 0.14150943396226415, 0.11320754716981132, 0.07547169811320754, 0.0660377358490566, 0.0660377358490566, 0.04716981132075472, 0.05660377358490566, 0.04716981132075472, 0.07547169811320754, 0.08490566037735849, 0.0660377358490566, 0.0660377358490566, 0.0660377358490566, 0.05660377358490566, 0.0660377358490566, 0.0660377358490566, 0.04716981132075472, 0.04716981132075472, 0.04716981132075472, 0.04716981132075472, 0.02830188679245283, 0.018867924528301886, 0.02830188679245283, 0.02830188679245283, 0.018867924528301886, 0.018867924528301886, 0.03773584905660377, 0.04716981132075472, 0.660377358490566, 0.4056603773584906, 0.36792452830188677, 0.14150943396226415, 0.11320754716981132, 0.04716981132075472, 0.02830188679245283, 0.02830188679245283, 0.009433962264150943, 0.009433962264150943, 0.009433962264150943, 0.009433962264150943, 0.7452830188679245, 0.7735849056603774, 0.8207547169811321, 0.8207547169811321, 0.8207547169811321, 0.7452830188679245, 0.7452830188679245, 0.009433962264150943, 0.009433962264150943, 0.009433962264150943, 0.009433962264150943, 0.009433962264150943, 0.018867924528301886, 0.018867924528301886, 0.018867924528301886, 0.009433962264150943, 0.16981132075471697, 0.16981132075471697, 0.16981132075471697, 0.02830188679245283, 0.018867924528301886, 0.02830188679245283, 0.03773584905660377, 0.03773584905660377, 0.07547169811320754, 0.1320754716981132, 0.19811320754716982, 0.22641509433962265, 0.22641509433962265, 0.25471698113207547, 0.27358490566037735, 0.29245283018867924, 0.29245283018867924, 0.3018867924528302, 0.3113207547169811, 0.36792452830188677, 0.3584905660377358, 0.4056603773584906, 0.42452830188679247, 0.5094339622641509], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Phage_holin_4_2.gap.json b/pfam_gap_rates/Phage_holin_4_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b944a7badd4d927d65cbe43dd8f700e41f62a8e4
--- /dev/null
+++ b/pfam_gap_rates/Phage_holin_4_2.gap.json
@@ -0,0 +1 @@
+{"family": "Phage_holin_4_2", "n_seqs": 1258, "length": 121, "gap_rates": [0.6208267090620032, 0.2702702702702703, 0.10810810810810811, 0.06756756756756757, 0.05246422893481717, 0.04054054054054054, 0.03179650238473768, 0.028616852146263912, 0.025437201907790145, 0.021462639109697933, 0.021462639109697933, 0.01987281399046105, 0.019077901430842606, 0.019077901430842606, 0.017488076311605722, 0.016693163751987282, 0.01589825119236884, 0.014308426073131956, 0.013513513513513514, 0.019077901430842606, 0.01192368839427663, 0.9284578696343402, 0.01192368839427663, 0.012718600953895072, 0.009538950715421303, 0.008744038155802861, 0.009538950715421303, 0.8139904610492846, 0.019077901430842606, 0.028616852146263912, 0.8259141494435612, 0.8434022257551669, 0.8553259141494436, 0.9220985691573926, 0.9459459459459459, 0.904610492845787, 0.8513513513513513, 0.8314785373608903, 0.8203497615262321, 0.010333863275039745, 0.008744038155802861, 0.007154213036565978, 0.007154213036565978, 0.006359300476947536, 0.006359300476947536, 0.007154213036565978, 0.006359300476947536, 0.006359300476947536, 0.005564387917329093, 0.005564387917329093, 0.0047694753577106515, 0.00397456279809221, 0.00397456279809221, 0.003179650238473768, 0.003179650238473768, 0.003179650238473768, 0.005564387917329093, 0.00397456279809221, 0.003179650238473768, 0.0023847376788553257, 0.001589825119236884, 0.001589825119236884, 0.006359300476947536, 0.005564387917329093, 0.0047694753577106515, 0.00397456279809221, 0.0047694753577106515, 0.09300476947535771, 0.10174880763116058, 0.09936406995230525, 0.015103338632750398, 0.005564387917329093, 0.0023847376788553257, 0.0023847376788553257, 0.0023847376788553257, 0.001589825119236884, 0.001589825119236884, 0.001589825119236884, 0.001589825119236884, 0.001589825119236884, 0.001589825119236884, 0.001589825119236884, 0.001589825119236884, 0.000794912559618442, 0.000794912559618442, 0.001589825119236884, 0.001589825119236884, 0.001589825119236884, 0.0047694753577106515, 0.0023847376788553257, 0.006359300476947536, 0.009538950715421303, 0.05802861685214626, 0.0047694753577106515, 0.7845786963434023, 0.8282988871224165, 0.9276629570747218, 0.8227344992050875, 0.6828298887122417, 0.005564387917329093, 0.0047694753577106515, 0.0047694753577106515, 0.013513513513513514, 0.11128775834658187, 0.013513513513513514, 0.03577106518282989, 0.03577106518282989, 0.03656597774244833, 0.037360890302066775, 0.03656597774244833, 0.037360890302066775, 0.037360890302066775, 0.03815580286168521, 0.038950715421303655, 0.04054054054054054, 0.04292527821939587, 0.04451510333863275, 0.050079491255961846, 0.06836248012718601, 0.15023847376788554, 0.5071542130365659], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Phage_int_SAM_1.gap.json b/pfam_gap_rates/Phage_int_SAM_1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a22da452909e49c7c5f23b3f1bc9b69414598818
--- /dev/null
+++ b/pfam_gap_rates/Phage_int_SAM_1.gap.json
@@ -0,0 +1 @@
+{"family": "Phage_int_SAM_1", "n_seqs": 4052, "length": 101, "gap_rates": [0.574284304047384, 0.38869693978282327, 0.2643139190523198, 0.20409674234945707, 0.1966929911154985, 0.17645607107601186, 0.1606614017769003, 0.14955577492596248, 0.14091806515301086, 0.1934846989141165, 0.11475814412635735, 0.09180651530108588, 0.07058242843040474, 0.10784797630799606, 0.033070088845014806, 0.02073050345508391, 0.01702862783810464, 0.015547877591312933, 0.013079960513326752, 0.012833168805528134, 0.012339585389930898, 0.01209279368213228, 0.011846001974333662, 0.011846001974333662, 0.01209279368213228, 0.011846001974333662, 0.01085883514313919, 0.009871668311944718, 0.009378084896347482, 0.0096248766041461, 0.009378084896347482, 0.008884501480750246, 0.008884501480750246, 0.010612043435340572, 0.010612043435340572, 0.8331688055281342, 0.9054787759131293, 0.9215202369200395, 0.8849950641658441, 0.7223593287265548, 0.40473840078973344, 0.1920039486673248, 0.1727541954590326, 0.0797137216189536, 0.05231984205330701, 0.034797630799605135, 0.014313919052319843, 0.01209279368213228, 0.01085883514313919, 0.009871668311944718, 0.009871668311944718, 0.010365251727541954, 0.011352418558736426, 0.0096248766041461, 0.8928923988153998, 0.926949654491609, 0.9306515301085884, 0.8961006910167818, 0.8864758144126358, 0.009378084896347482, 0.0096248766041461, 0.0096248766041461, 0.010118460019743336, 0.010365251727541954, 0.011352418558736426, 0.011846001974333662, 0.01332675222112537, 0.013820335636722606, 0.09772951628825272, 0.10118460019743336, 0.8447680157946693, 0.8832675222112537, 0.932872655478776, 0.9427443237907206, 0.9020236920039487, 0.8566140177690029, 0.7482724580454096, 0.039486673247778874, 0.024679170779861797, 0.02295162882527147, 0.019743336623889437, 0.0192497532082922, 0.018509378084896347, 0.018756169792694965, 0.01949654491609082, 0.02048371174728529, 0.02073050345508391, 0.02048371174728529, 0.021224086870681145, 0.022458045409674235, 0.02566633761105627, 0.02813425468904245, 0.030848963474827247, 0.03405725567620928, 0.039733464955577495, 0.055281342546890426, 0.09230009871668311, 0.1853405725567621, 0.2954096742349457, 0.43213228035538004, 0.6806515301085884], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Phage_int_SAM_3.gap.json b/pfam_gap_rates/Phage_int_SAM_3.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..013647028853e1e36675f47f6b994a9df7b612a7
--- /dev/null
+++ b/pfam_gap_rates/Phage_int_SAM_3.gap.json
@@ -0,0 +1 @@
+{"family": "Phage_int_SAM_3", "n_seqs": 1776, "length": 60, "gap_rates": [0.4391891891891892, 0.1891891891891892, 0.13795045045045046, 0.11373873873873874, 0.08333333333333333, 0.07376126126126126, 0.05855855855855856, 0.050112612612612614, 0.04335585585585586, 0.039414414414414414, 0.037162162162162164, 0.03547297297297297, 0.8963963963963963, 0.10754504504504504, 0.08164414414414414, 0.713963963963964, 0.051238738738738736, 0.03434684684684685, 0.019144144144144143, 0.01295045045045045, 0.011824324324324325, 0.007882882882882882, 0.007882882882882882, 0.006756756756756757, 0.00563063063063063, 0.003941441441441441, 0.0033783783783783786, 0.0033783783783783786, 0.0022522522522522522, 0.0033783783783783786, 0.0011261261261261261, 0.0, 0.03490990990990991, 0.09234234234234234, 0.01295045045045045, 0.00731981981981982, 0.0045045045045045045, 0.0016891891891891893, 0.0016891891891891893, 0.0033783783783783786, 0.003941441441441441, 0.006193693693693694, 0.013513513513513514, 0.015202702702702704, 0.01463963963963964, 0.01632882882882883, 0.018581081081081082, 0.019144144144144143, 0.021396396396396396, 0.02702702702702703, 0.03153153153153153, 0.04054054054054054, 0.05912162162162162, 0.1036036036036036, 0.12950450450450451, 0.17117117117117117, 0.25506756756756754, 0.356981981981982, 0.4780405405405405, 0.9144144144144144], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Phage_integrase.gap.json b/pfam_gap_rates/Phage_integrase.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..978badefa331acec1b9821702585cc0367246815
--- /dev/null
+++ b/pfam_gap_rates/Phage_integrase.gap.json
@@ -0,0 +1 @@
+{"family": "Phage_integrase", "n_seqs": 5000, "length": 222, "gap_rates": [0.7308, 0.5586, 0.5, 0.447, 0.3988, 0.3732, 0.3568, 0.3426, 0.3292, 0.3192, 0.3106, 0.3046, 0.2986, 0.2952, 0.2936, 0.2826, 0.7032, 0.9074, 0.9282, 0.8722, 0.6178, 0.5014, 0.3992, 0.348, 0.2544, 0.1842, 0.1694, 0.1548, 0.1462, 0.1222, 0.1108, 0.1084, 0.1018, 0.0996, 0.096, 0.0968, 0.0918, 0.0888, 0.0858, 0.0854, 0.0852, 0.084, 0.0834, 0.083, 0.0834, 0.0826, 0.0822, 0.0818, 0.0818, 0.0828, 0.0806, 0.9456, 0.0798, 0.1714, 0.1506, 0.0846, 0.0812, 0.0796, 0.078, 0.078, 0.0788, 0.08, 0.579, 0.7514, 0.7754, 0.799, 0.8224, 0.8476, 0.8836, 0.9398, 0.916, 0.8576, 0.8362, 0.8098, 0.7888, 0.764, 0.7418, 0.5364, 0.3566, 0.114, 0.115, 0.1038, 0.0984, 0.0962, 0.0958, 0.0794, 0.9132, 0.9392, 0.9236, 0.8344, 0.0786, 0.0784, 0.0772, 0.0782, 0.0776, 0.0784, 0.9318, 0.0822, 0.0808, 0.0786, 0.0774, 0.0746, 0.0746, 0.074, 0.0744, 0.0742, 0.0754, 0.0782, 0.0802, 0.0826, 0.0862, 0.7138, 0.848, 0.9274, 0.945, 0.8912, 0.7606, 0.6696, 0.572, 0.5086, 0.433, 0.334, 0.2206, 0.162, 0.1292, 0.0882, 0.9482, 0.9474, 0.0812, 0.081, 0.0796, 0.0814, 0.0824, 0.0848, 0.743, 0.849, 0.8958, 0.9252, 0.9462, 0.9366, 0.909, 0.8782, 0.8252, 0.6712, 0.1814, 0.144, 0.1322, 0.123, 0.1116, 0.0856, 0.0748, 0.068, 0.0596, 0.0564, 0.0538, 0.0526, 0.0518, 0.0514, 0.0512, 0.0514, 0.0524, 0.0526, 0.0534, 0.0574, 0.099, 0.089, 0.088, 0.078, 0.8144, 0.8612, 0.9146, 0.9432, 0.8878, 0.842, 0.7156, 0.3532, 0.1022, 0.0522, 0.0472, 0.0442, 0.0446, 0.0434, 0.0424, 0.0424, 0.0478, 0.0448, 0.0456, 0.048, 0.0486, 0.0542, 0.055, 0.0568, 0.0554, 0.0594, 0.0626, 0.0714, 0.06, 0.0612, 0.062, 0.0628, 0.0632, 0.064, 0.065, 0.0666, 0.0672, 0.0684, 0.075, 0.0744, 0.0836, 0.0892, 0.0938, 0.0998, 0.1024, 0.768, 0.106, 0.1088, 0.1096, 0.1338, 0.1994, 0.2956, 0.462, 0.8276], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Phage_tail_X.gap.json b/pfam_gap_rates/Phage_tail_X.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f4c3b29c304a283c4a0adbd65702e973cd6bd6df
--- /dev/null
+++ b/pfam_gap_rates/Phage_tail_X.gap.json
@@ -0,0 +1 @@
+{"family": "Phage_tail_X", "n_seqs": 167, "length": 62, "gap_rates": [0.844311377245509, 0.6826347305389222, 0.5029940119760479, 0.3473053892215569, 0.16766467065868262, 0.1377245508982036, 0.7664670658682635, 0.08982035928143713, 0.0718562874251497, 0.0718562874251497, 0.05389221556886228, 0.041916167664670656, 0.041916167664670656, 0.041916167664670656, 0.041916167664670656, 0.041916167664670656, 0.041916167664670656, 0.041916167664670656, 0.041916167664670656, 0.041916167664670656, 0.03592814371257485, 0.03592814371257485, 0.041916167664670656, 0.9101796407185628, 0.0658682634730539, 0.059880239520958084, 0.041916167664670656, 0.3772455089820359, 0.04790419161676647, 0.023952095808383235, 0.023952095808383235, 0.011976047904191617, 0.011976047904191617, 0.011976047904191617, 0.011976047904191617, 0.017964071856287425, 0.023952095808383235, 0.03592814371257485, 0.023952095808383235, 0.023952095808383235, 0.023952095808383235, 0.4431137724550898, 0.03592814371257485, 0.03592814371257485, 0.03592814371257485, 0.03592814371257485, 0.03592814371257485, 0.03592814371257485, 0.041916167664670656, 0.041916167664670656, 0.041916167664670656, 0.041916167664670656, 0.041916167664670656, 0.041916167664670656, 0.05389221556886228, 0.0718562874251497, 0.11377245508982035, 0.2874251497005988, 0.46706586826347307, 0.6107784431137725, 0.7844311377245509, 0.9161676646706587], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Phi_1.gap.json b/pfam_gap_rates/Phi_1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..798096f7fbf15210ec98f56d9aaa6058bd3d637c
--- /dev/null
+++ b/pfam_gap_rates/Phi_1.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/PhoD.gap.json b/pfam_gap_rates/PhoD.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..5bdad3794431fb386fe02aa7c1ef156633b38772
--- /dev/null
+++ b/pfam_gap_rates/PhoD.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/PhoU_div.gap.json b/pfam_gap_rates/PhoU_div.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a6d6783879444caa017d1c4483fbb27ceededef4
--- /dev/null
+++ b/pfam_gap_rates/PhoU_div.gap.json
@@ -0,0 +1 @@
+{"family": "PhoU_div", "n_seqs": 878, "length": 219, "gap_rates": [0.9020501138952164, 0.8132118451025057, 0.7596810933940774, 0.7084282460136674, 0.6856492027334852, 0.6343963553530751, 0.5148063781321185, 0.42482915717539865, 0.3690205011389522, 0.3052391799544419, 0.2539863325740319, 0.20501138952164008, 0.17995444191343962, 0.16287015945330297, 0.1480637813211845, 0.14009111617312073, 0.1378132118451025, 0.13325740318906606, 0.12984054669703873, 0.12414578587699317, 0.12072892938496584, 0.11275626423690205, 0.1070615034168565, 0.10478359908883828, 0.09681093394077449, 0.09453302961275627, 0.09339407744874716, 0.08997722095671981, 0.0785876993166287, 0.0774487471526196, 0.07630979498861047, 0.0774487471526196, 0.07517084282460136, 0.07061503416856492, 0.07630979498861047, 0.38724373576309795, 0.14236902050113895, 0.23690205011389523, 0.08997722095671981, 0.05922551252847381, 0.05239179954441914, 0.05011389521640091, 0.0489749430523918, 0.04328018223234624, 0.04100227790432802, 0.0387243735763098, 0.03530751708428246, 0.030751708428246014, 0.029612756264236904, 0.02847380410022779, 0.02733485193621868, 0.02733485193621868, 0.02619589977220957, 0.02619589977220957, 0.02619589977220957, 0.025056947608200455, 0.023917995444191344, 0.023917995444191344, 0.022779043280182234, 0.0193621867881549, 0.018223234624145785, 0.018223234624145785, 0.017084282460136675, 0.017084282460136675, 0.017084282460136675, 0.015945330296127564, 0.014806378132118452, 0.014806378132118452, 0.02733485193621868, 0.023917995444191344, 0.022779043280182234, 0.0193621867881549, 0.023917995444191344, 0.017084282460136675, 0.017084282460136675, 0.017084282460136675, 0.01366742596810934, 0.014806378132118452, 0.012528473804100227, 0.012528473804100227, 0.012528473804100227, 0.012528473804100227, 0.012528473804100227, 0.012528473804100227, 0.01366742596810934, 0.01366742596810934, 0.01366742596810934, 0.01366742596810934, 0.01366742596810934, 0.01366742596810934, 0.01366742596810934, 0.01366742596810934, 0.01366742596810934, 0.014806378132118452, 0.015945330296127564, 0.017084282460136675, 0.018223234624145785, 0.018223234624145785, 0.015945330296127564, 0.015945330296127564, 0.015945330296127564, 0.017084282460136675, 0.018223234624145785, 0.02050113895216401, 0.09681093394077449, 0.5455580865603644, 0.5250569476082004, 0.46924829157175396, 0.07403189066059225, 0.07517084282460136, 0.07403189066059225, 0.0683371298405467, 0.05353075170842825, 0.04441913439635535, 0.03530751708428246, 0.03530751708428246, 0.03302961275626424, 0.030751708428246014, 0.030751708428246014, 0.029612756264236904, 0.03189066059225513, 0.03189066059225513, 0.030751708428246014, 0.029612756264236904, 0.029612756264236904, 0.02847380410022779, 0.029612756264236904, 0.02847380410022779, 0.02847380410022779, 0.03189066059225513, 0.02847380410022779, 0.023917995444191344, 0.02164009111617312, 0.022779043280182234, 0.022779043280182234, 0.02619589977220957, 0.02733485193621868, 0.08997722095671981, 0.41116173120728927, 0.2847380410022779, 0.07403189066059225, 0.0489749430523918, 0.04441913439635535, 0.0387243735763098, 0.05353075170842825, 0.36104783599088835, 0.3712984054669704, 0.7596810933940774, 0.8086560364464692, 0.8337129840546698, 0.8200455580865603, 0.7972665148063781, 0.7209567198177677, 0.12186788154897495, 0.02733485193621868, 0.02619589977220957, 0.029612756264236904, 0.02847380410022779, 0.030751708428246014, 0.02847380410022779, 0.02847380410022779, 0.025056947608200455, 0.023917995444191344, 0.023917995444191344, 0.023917995444191344, 0.023917995444191344, 0.023917995444191344, 0.023917995444191344, 0.025056947608200455, 0.025056947608200455, 0.025056947608200455, 0.025056947608200455, 0.023917995444191344, 0.02619589977220957, 0.02619589977220957, 0.02619589977220957, 0.02733485193621868, 0.02733485193621868, 0.02733485193621868, 0.26879271070615035, 0.24259681093394078, 0.10592255125284739, 0.48291571753986334, 0.3439635535307517, 0.07289293849658314, 0.03302961275626424, 0.03302961275626424, 0.03416856492027335, 0.03416856492027335, 0.03530751708428246, 0.03758542141230068, 0.03530751708428246, 0.03644646924829157, 0.03530751708428246, 0.03416856492027335, 0.03530751708428246, 0.03758542141230068, 0.03986332574031891, 0.03758542141230068, 0.0387243735763098, 0.0387243735763098, 0.0387243735763098, 0.03986332574031891, 0.03986332574031891, 0.04100227790432802, 0.04100227790432802, 0.04214123006833713, 0.04214123006833713, 0.04669703872437358, 0.0489749430523918, 0.05466970387243736, 0.06150341685649203, 0.07175398633257403, 0.08086560364464693, 0.08997722095671981, 0.10364464692482915, 0.14236902050113895, 0.25968109339407747, 0.8712984054669703], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PilP.gap.json b/pfam_gap_rates/PilP.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..034394e7f2b9892e84c0d273f8c8c303801541b2
--- /dev/null
+++ b/pfam_gap_rates/PilP.gap.json
@@ -0,0 +1 @@
+{"family": "PilP", "n_seqs": 292, "length": 152, "gap_rates": [0.3732876712328767, 0.3184931506849315, 0.2842465753424658, 0.2705479452054795, 0.2671232876712329, 0.2602739726027397, 0.2602739726027397, 0.2534246575342466, 0.2534246575342466, 0.23972602739726026, 0.22945205479452055, 0.2226027397260274, 0.2089041095890411, 0.2089041095890411, 0.2054794520547945, 0.2054794520547945, 0.2054794520547945, 0.19863013698630136, 0.1917808219178082, 0.1917808219178082, 0.18493150684931506, 0.17465753424657535, 0.16095890410958905, 0.14383561643835616, 0.13356164383561644, 0.11643835616438356, 0.1095890410958904, 0.10273972602739725, 0.09931506849315068, 0.09931506849315068, 0.0958904109589041, 0.10616438356164383, 0.0958904109589041, 0.08904109589041095, 0.07534246575342465, 0.07876712328767123, 0.06506849315068493, 0.0547945205479452, 0.0547945205479452, 0.0547945205479452, 0.0547945205479452, 0.0547945205479452, 0.0547945205479452, 0.0547945205479452, 0.0547945205479452, 0.0547945205479452, 0.0547945205479452, 0.0547945205479452, 0.07534246575342465, 0.136986301369863, 0.18493150684931506, 0.2842465753424658, 0.3664383561643836, 0.4212328767123288, 0.5136986301369864, 0.8493150684931506, 0.910958904109589, 0.8904109589041096, 0.726027397260274, 0.17123287671232876, 0.136986301369863, 0.1095890410958904, 0.09246575342465753, 0.0821917808219178, 0.0821917808219178, 0.09246575342465753, 0.07876712328767123, 0.04452054794520548, 0.04794520547945205, 0.0410958904109589, 0.030821917808219176, 0.030821917808219176, 0.0273972602739726, 0.030821917808219176, 0.03424657534246575, 0.0273972602739726, 0.023972602739726026, 0.02054794520547945, 0.02054794520547945, 0.017123287671232876, 0.017123287671232876, 0.0136986301369863, 0.0136986301369863, 0.00684931506849315, 0.00684931506849315, 0.00684931506849315, 0.00684931506849315, 0.003424657534246575, 0.9075342465753424, 0.003424657534246575, 0.003424657534246575, 0.003424657534246575, 0.010273972602739725, 0.003424657534246575, 0.003424657534246575, 0.003424657534246575, 0.003424657534246575, 0.003424657534246575, 0.00684931506849315, 0.00684931506849315, 0.00684931506849315, 0.2568493150684932, 0.00684931506849315, 0.00684931506849315, 0.00684931506849315, 0.00684931506849315, 0.00684931506849315, 0.00684931506849315, 0.00684931506849315, 0.00684931506849315, 0.00684931506849315, 0.00684931506849315, 0.00684931506849315, 0.00684931506849315, 0.003424657534246575, 0.003424657534246575, 0.003424657534246575, 0.02054794520547945, 0.010273972602739725, 0.010273972602739725, 0.00684931506849315, 0.00684931506849315, 0.00684931506849315, 0.00684931506849315, 0.00684931506849315, 0.00684931506849315, 0.00684931506849315, 0.00684931506849315, 0.00684931506849315, 0.00684931506849315, 0.00684931506849315, 0.010273972602739725, 0.0273972602739726, 0.030821917808219176, 0.05136986301369863, 0.0684931506849315, 0.07191780821917808, 0.08904109589041095, 0.0958904109589041, 0.11301369863013698, 0.09931506849315068, 0.11301369863013698, 0.13013698630136986, 0.1267123287671233, 0.13013698630136986, 0.14726027397260275, 0.1506849315068493, 0.15753424657534246, 0.16095890410958905, 0.17465753424657535, 0.2328767123287671, 0.2979452054794521], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PilW.gap.json b/pfam_gap_rates/PilW.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..646b853f15fbe4a6b9ce4077226cda3dec7c649e
--- /dev/null
+++ b/pfam_gap_rates/PilW.gap.json
@@ -0,0 +1 @@
+{"family": "PilW", "n_seqs": 275, "length": 193, "gap_rates": [0.6472727272727272, 0.43636363636363634, 0.4036363636363636, 0.39636363636363636, 0.39636363636363636, 0.3927272727272727, 0.3781818181818182, 0.3781818181818182, 0.4218181818181818, 0.41454545454545455, 0.8072727272727273, 0.8945454545454545, 0.9454545454545454, 0.9163636363636364, 0.8654545454545455, 0.76, 0.6145454545454545, 0.36, 0.3054545454545455, 0.2545454545454545, 0.24, 0.24, 0.23636363636363636, 0.2509090909090909, 0.2872727272727273, 0.45454545454545453, 0.6036363636363636, 0.6690909090909091, 0.6836363636363636, 0.8327272727272728, 0.8981818181818182, 0.9381818181818182, 0.9236363636363636, 0.8763636363636363, 0.8, 0.3090909090909091, 0.2509090909090909, 0.2109090909090909, 0.12363636363636364, 0.06909090909090909, 0.04727272727272727, 0.04363636363636364, 0.04363636363636364, 0.02909090909090909, 0.02909090909090909, 0.02909090909090909, 0.02181818181818182, 0.02181818181818182, 0.02181818181818182, 0.02181818181818182, 0.02181818181818182, 0.02181818181818182, 0.01818181818181818, 0.01818181818181818, 0.01818181818181818, 0.01818181818181818, 0.01818181818181818, 0.02181818181818182, 0.014545454545454545, 0.014545454545454545, 0.7381818181818182, 0.8327272727272728, 0.8727272727272727, 0.9090909090909091, 0.9345454545454546, 0.9490909090909091, 0.9272727272727272, 0.8945454545454545, 0.850909090909091, 0.8181818181818182, 0.6763636363636364, 0.18545454545454546, 0.16727272727272727, 0.11272727272727273, 0.08363636363636363, 0.08, 0.04, 0.04, 0.04727272727272727, 0.03272727272727273, 0.02909090909090909, 0.025454545454545455, 0.025454545454545455, 0.025454545454545455, 0.025454545454545455, 0.04727272727272727, 0.04363636363636364, 0.31636363636363635, 0.31272727272727274, 0.48727272727272725, 0.5527272727272727, 0.49818181818181817, 0.730909090909091, 0.8036363636363636, 0.8472727272727273, 0.8909090909090909, 0.9163636363636364, 0.9345454545454546, 0.9454545454545454, 0.9345454545454546, 0.9272727272727272, 0.9090909090909091, 0.8836363636363637, 0.8218181818181818, 0.7745454545454545, 0.6727272727272727, 0.07272727272727272, 0.10909090909090909, 0.08363636363636363, 0.014545454545454545, 0.01090909090909091, 0.007272727272727273, 0.007272727272727273, 0.007272727272727273, 0.007272727272727273, 0.007272727272727273, 0.007272727272727273, 0.007272727272727273, 0.01090909090909091, 0.03636363636363636, 0.03636363636363636, 0.03272727272727273, 0.03272727272727273, 0.03636363636363636, 0.04, 0.8654545454545455, 0.9309090909090909, 0.9490909090909091, 0.92, 0.7890909090909091, 0.23636363636363636, 0.13454545454545455, 0.10909090909090909, 0.09454545454545454, 0.08, 0.08363636363636363, 0.9090909090909091, 0.09090909090909091, 0.09454545454545454, 0.09818181818181818, 0.10181818181818182, 0.10181818181818182, 0.11636363636363636, 0.10545454545454545, 0.10181818181818182, 0.10181818181818182, 0.10909090909090909, 0.10545454545454545, 0.8872727272727273, 0.9418181818181818, 0.9054545454545454, 0.8327272727272728, 0.11636363636363636, 0.15636363636363637, 0.15636363636363637, 0.2, 0.18181818181818182, 0.2545454545454545, 0.5781818181818181, 0.6836363636363636, 0.7163636363636363, 0.7709090909090909, 0.8218181818181818, 0.8581818181818182, 0.8909090909090909, 0.9018181818181819, 0.9236363636363636, 0.9490909090909091, 0.9490909090909091, 0.9272727272727272, 0.9127272727272727, 0.8945454545454545, 0.8690909090909091, 0.8436363636363636, 0.8036363636363636, 0.730909090909091, 0.6981818181818182, 0.6618181818181819, 0.13090909090909092, 0.12, 0.12, 0.12, 0.12, 0.12, 0.12363636363636364, 0.12363636363636364, 0.12727272727272726, 0.12727272727272726, 0.13454545454545455, 0.14545454545454545, 0.14909090909090908, 0.16, 0.19272727272727272], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Pilin.gap.json b/pfam_gap_rates/Pilin.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b80956cfcd636847916920b6cc291035ddbb032e
--- /dev/null
+++ b/pfam_gap_rates/Pilin.gap.json
@@ -0,0 +1 @@
+{"family": "Pilin", "n_seqs": 321, "length": 166, "gap_rates": [0.5202492211838006, 0.11838006230529595, 0.09657320872274143, 0.09034267912772585, 0.08099688473520249, 0.0778816199376947, 0.0778816199376947, 0.07165109034267912, 0.06853582554517133, 0.06853582554517133, 0.06853582554517133, 0.04672897196261682, 0.040498442367601244, 0.037383177570093455, 0.037383177570093455, 0.037383177570093455, 0.03115264797507788, 0.03115264797507788, 0.03115264797507788, 0.18691588785046728, 0.03426791277258567, 0.037383177570093455, 0.028037383177570093, 0.03426791277258567, 0.028037383177570093, 0.06230529595015576, 0.9376947040498442, 0.9439252336448598, 0.940809968847352, 0.9314641744548287, 0.04361370716510903, 0.04361370716510903, 0.04361370716510903, 0.04672897196261682, 0.04672897196261682, 0.09034267912772585, 0.08722741433021806, 0.07476635514018691, 0.12149532710280374, 0.4672897196261682, 0.7694704049844237, 0.8566978193146417, 0.9158878504672897, 0.8847352024922118, 0.794392523364486, 0.6573208722741433, 0.0529595015576324, 0.037383177570093455, 0.03426791277258567, 0.028037383177570093, 0.03426791277258567, 0.03115264797507788, 0.040498442367601244, 0.04672897196261682, 0.08411214953271028, 0.1838006230529595, 0.13707165109034267, 0.632398753894081, 0.9190031152647975, 0.9376947040498442, 0.8722741433021807, 0.5264797507788161, 0.04984423676012461, 0.0529595015576324, 0.037383177570093455, 0.03426791277258567, 0.03115264797507788, 0.04984423676012461, 0.04361370716510903, 0.04361370716510903, 0.29906542056074764, 0.5171339563862928, 0.5638629283489096, 0.8037383177570093, 0.8940809968847352, 0.940809968847352, 0.9158878504672897, 0.8660436137071651, 0.7289719626168224, 0.01557632398753894, 0.01557632398753894, 0.01557632398753894, 0.009345794392523364, 0.012461059190031152, 0.009345794392523364, 0.009345794392523364, 0.003115264797507788, 0.006230529595015576, 0.009345794392523364, 0.021806853582554516, 0.09968847352024922, 0.2616822429906542, 0.42990654205607476, 0.8753894080996885, 0.9345794392523364, 0.6448598130841121, 0.08411214953271028, 0.040498442367601244, 0.012461059190031152, 0.018691588785046728, 0.01557632398753894, 0.012461059190031152, 0.01557632398753894, 0.012461059190031152, 0.01557632398753894, 0.018691588785046728, 0.018691588785046728, 0.03426791277258567, 0.028037383177570093, 0.6853582554517134, 0.7725856697819314, 0.8130841121495327, 0.8161993769470405, 0.8442367601246106, 0.8785046728971962, 0.8878504672897196, 0.9376947040498442, 0.9065420560747663, 0.8878504672897196, 0.8598130841121495, 0.838006230529595, 0.8161993769470405, 0.8037383177570093, 0.7632398753894081, 0.6137071651090342, 0.20249221183800623, 0.18691588785046728, 0.12149532710280374, 0.024922118380062305, 0.021806853582554516, 0.021806853582554516, 0.024922118380062305, 0.03115264797507788, 0.037383177570093455, 0.056074766355140186, 0.38006230529595014, 0.6199376947040498, 0.7227414330218068, 0.778816199376947, 0.8037383177570093, 0.8099688473520249, 0.8317757009345794, 0.8909657320872274, 0.9314641744548287, 0.9439252336448598, 0.9034267912772586, 0.8473520249221184, 0.8161993769470405, 0.8099688473520249, 0.7881619937694704, 0.7570093457943925, 0.6791277258566978, 0.5887850467289719, 0.49221183800623053, 0.1838006230529595, 0.16199376947040497, 0.16199376947040497, 0.16510903426791276, 0.17445482866043613, 0.17757009345794392, 0.1838006230529595, 0.18691588785046728, 0.19003115264797507, 0.21495327102803738, 0.24610591900311526, 0.3862928348909657], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Pkinase_C.gap.json b/pfam_gap_rates/Pkinase_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..0604d569bdcdffbaeafa741c580cda40c3d1b03b
--- /dev/null
+++ b/pfam_gap_rates/Pkinase_C.gap.json
@@ -0,0 +1 @@
+{"family": "Pkinase_C", "n_seqs": 1957, "length": 57, "gap_rates": [0.3418497700562085, 0.21819110884006132, 0.14716402657128258, 0.08737864077669903, 0.06489524782830863, 0.05620848237097598, 0.04803270311701584, 0.025549310168625446, 0.0035769034236075624, 0.0025549310168625446, 0.002043944813490036, 0.1369443025038324, 0.0030659172202350538, 0.0061318344404701075, 0.005109862033725089, 0.004087889626980072, 0.002043944813490036, 0.004087889626980072, 0.01481859989780276, 0.016351558507920288, 0.013796627491057742, 0.012263668880940215, 0.013796627491057742, 0.03474706182933061, 0.05620848237097598, 0.5559529892692897, 0.7511497189575882, 0.8814512008175779, 0.9013796627491057, 0.9121103730199285, 0.9294839039345938, 0.913643331630046, 0.9095554420030659, 0.8942258559018906, 0.8671435871231477, 0.7378640776699029, 0.6862544711292795, 0.29535002554931017, 0.14971895758814513, 0.09351047521716914, 0.07153806847215124, 0.04803270311701584, 0.04394481349003577, 0.04190086867654573, 0.04190086867654573, 0.01890648952478283, 0.9381706693919264, 0.9407256004087889, 0.9315278487480838, 0.021972406745017884, 0.020439448134900357, 0.019417475728155338, 0.021972406745017884, 0.02452733776188043, 0.026060296371997957, 0.03168114460909555, 0.06591722023505366], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Polysacc_lyase.gap.json b/pfam_gap_rates/Polysacc_lyase.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..5a7735bca2a092b91556344831240f588b464010
--- /dev/null
+++ b/pfam_gap_rates/Polysacc_lyase.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Pribosyl_synth.gap.json b/pfam_gap_rates/Pribosyl_synth.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..afacc97648c87b61e8a71bfd5d033cd9bfed5882
--- /dev/null
+++ b/pfam_gap_rates/Pribosyl_synth.gap.json
@@ -0,0 +1 @@
+{"family": "Pribosyl_synth", "n_seqs": 2866, "length": 184, "gap_rates": [0.9466154919748779, 0.9434752267969295, 0.9417306350314026, 0.9417306350314026, 0.9417306350314026, 0.9417306350314026, 0.942079553384508, 0.9417306350314026, 0.9417306350314026, 0.9417306350314026, 0.9417306350314026, 0.9417306350314026, 0.9417306350314026, 0.9413817166782973, 0.9413817166782973, 0.9413817166782973, 0.9406838799720866, 0.9403349616189811, 0.9403349616189811, 0.9403349616189811, 0.9403349616189811, 0.9403349616189811, 0.9403349616189811, 0.9403349616189811, 0.9403349616189811, 0.9403349616189811, 0.9396371249127704, 0.9389392882065597, 0.9396371249127704, 0.939288206559665, 0.939288206559665, 0.939288206559665, 0.939288206559665, 0.939288206559665, 0.939288206559665, 0.9399860432658758, 0.9406838799720866, 0.9410327983251919, 0.9431263084438242, 0.9424284717376133, 0.9413817166782973, 0.942079553384508, 0.9424284717376133, 0.9424284717376133, 0.9424284717376133, 0.9424284717376133, 0.9427773900907188, 0.9417306350314026, 0.9399860432658758, 0.9399860432658758, 0.9399860432658758, 0.9399860432658758, 0.9417306350314026, 0.9445219818562456, 0.9413817166782973, 0.9455687369155618, 0.9438241451500349, 0.9406838799720866, 0.9396371249127704, 0.9361479413817166, 0.9361479413817166, 0.9347522679692952, 0.9344033496161898, 0.9330076762037683, 0.927076064200977, 0.9239357990230286, 0.9138171667829728, 0.8932309839497558, 0.849616189811584, 0.7944870900209351, 0.7226099092812281, 0.6926029309141661, 0.6078157711095603, 0.31507327285415215, 0.19155617585484996, 0.081297976273552, 0.042219120725750174, 0.03558967201674808, 0.028611304954640614, 0.023377529658060014, 0.02198185624563852, 0.020586182833217028, 0.021284019539427775, 0.01884159106769016, 0.018143754361479414, 0.017445917655268667, 0.016050244242847175, 0.01465457083042568, 0.014305652477320307, 0.01360781577110956, 0.01360781577110956, 0.013956734124214934, 0.013956734124214934, 0.013956734124214934, 0.013956734124214934, 0.015003489183531053, 0.014305652477320307, 0.013956734124214934, 0.014305652477320307, 0.014305652477320307, 0.014305652477320307, 0.013956734124214934, 0.013956734124214934, 0.013956734124214934, 0.013956734124214934, 0.01360781577110956, 0.013956734124214934, 0.01360781577110956, 0.012909979064898814, 0.013258897418004187, 0.012909979064898814, 0.01256106071179344, 0.011863224005582694, 0.011863224005582694, 0.011863224005582694, 0.011863224005582694, 0.011863224005582694, 0.012212142358688068, 0.012212142358688068, 0.012212142358688068, 0.012212142358688068, 0.012212142358688068, 0.011863224005582694, 0.011514305652477321, 0.011863224005582694, 0.011863224005582694, 0.011863224005582694, 0.011165387299371946, 0.011165387299371946, 0.011165387299371946, 0.011165387299371946, 0.011514305652477321, 0.011165387299371946, 0.0104675505931612, 0.011165387299371946, 0.0104675505931612, 0.011514305652477321, 0.0104675505931612, 0.011514305652477321, 0.011514305652477321, 0.011165387299371946, 0.011514305652477321, 0.011863224005582694, 0.01256106071179344, 0.012909979064898814, 0.01465457083042568, 0.019539427773900907, 0.030704815073272853, 0.04396371249127704, 0.3541521284019539, 0.16050244242847173, 0.1374738311235171, 0.05722260990928123, 0.032449406838799724, 0.028262386601535242, 0.027913468248429867, 0.027564549895324496, 0.02896022330774599, 0.029658060013956735, 0.0314026517794836, 0.03210048848569435, 0.031751570132588974, 0.03279832519190509, 0.03279832519190509, 0.03279832519190509, 0.03349616189811584, 0.034193998604326585, 0.03593859036985345, 0.038032100488485696, 0.04082344731332868, 0.04570830425680391, 0.05129099790648988, 0.05373342637822749, 0.05687369155617585, 0.05931612002791347, 0.06245638520586183, 0.06559665038381018, 0.06838799720865317, 0.07431960921144452, 0.08025122121423586, 0.09525471039776692, 0.12386601535240754, 0.15073272854152128, 0.8789253314724355], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PrkA.gap.json b/pfam_gap_rates/PrkA.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e52308b4a6e0e253e5eb9edb108ef460acf1da0b
--- /dev/null
+++ b/pfam_gap_rates/PrkA.gap.json
@@ -0,0 +1 @@
+{"family": "PrkA", "n_seqs": 502, "length": 296, "gap_rates": [0.48804780876494025, 0.099601593625498, 0.03386454183266932, 0.021912350597609563, 0.021912350597609563, 0.021912350597609563, 0.021912350597609563, 0.021912350597609563, 0.021912350597609563, 0.021912350597609563, 0.029880478087649404, 0.09163346613545817, 0.5, 0.4860557768924303, 0.04780876494023904, 0.043824701195219126, 0.043824701195219126, 0.035856573705179286, 0.027888446215139442, 0.043824701195219126, 0.750996015936255, 0.01593625498007968, 0.01593625498007968, 0.01593625498007968, 0.01593625498007968, 0.01593625498007968, 0.021912350597609563, 0.900398406374502, 0.9123505976095617, 0.9123505976095617, 0.9382470119521913, 0.9143426294820717, 0.9123505976095617, 0.9023904382470119, 0.900398406374502, 0.017928286852589643, 0.01593625498007968, 0.0199203187250996, 0.3565737051792829, 0.0199203187250996, 0.9083665338645418, 0.9322709163346613, 0.8904382470119522, 0.08366533864541832, 0.01195219123505976, 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\ No newline at end of file
diff --git a/pfam_gap_rates/Proteasome_A_N.gap.json b/pfam_gap_rates/Proteasome_A_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ce84842699e7579381671e8930d3ea38f15624a6
--- /dev/null
+++ b/pfam_gap_rates/Proteasome_A_N.gap.json
@@ -0,0 +1 @@
+{"family": "Proteasome_A_N", "n_seqs": 2343, "length": 23, "gap_rates": [0.049082373026035, 0.03670507895860008, 0.020913358941527956, 0.012804097311139564, 0.007255655142979087, 0.007255655142979087, 0.002987622705932565, 0.002560819462227913, 0.0008536064874093043, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0012804097311139564, 0.0034144259496372174, 0.0038412291933418692, 0.004694835680751174, 0.007255655142979087, 0.02560819462227913, 0.050362782757148956], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PrsW-protease.gap.json b/pfam_gap_rates/PrsW-protease.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..9af813e4d36b7e6084062bd00eda5661d7238f6e
--- /dev/null
+++ b/pfam_gap_rates/PrsW-protease.gap.json
@@ -0,0 +1 @@
+{"family": "PrsW-protease", "n_seqs": 785, "length": 232, "gap_rates": [0.43821656050955415, 0.37579617834394907, 0.32993630573248406, 0.289171974522293, 0.25987261146496815, 0.21146496815286625, 0.17070063694267515, 0.14777070063694267, 0.11847133757961784, 0.10955414012738854, 0.10191082802547771, 0.09936305732484077, 0.09554140127388536, 0.09426751592356689, 0.09426751592356689, 0.09426751592356689, 0.0929936305732484, 0.0929936305732484, 0.09426751592356689, 0.9375796178343949, 0.578343949044586, 0.09044585987261146, 0.09044585987261146, 0.08917197452229299, 0.08662420382165605, 0.08280254777070063, 0.9401273885350319, 0.9477707006369427, 0.9439490445859873, 0.9337579617834395, 0.08662420382165605, 0.10955414012738854, 0.12101910828025478, 0.12611464968152866, 0.21528662420382166, 0.29044585987261146, 0.24585987261146497, 0.7872611464968153, 0.8828025477707007, 0.9235668789808917, 0.9019108280254777, 0.8484076433121019, 0.6917197452229299, 0.5006369426751592, 0.46114649681528663, 0.3796178343949045, 0.28152866242038216, 0.2445859872611465, 0.1859872611464968, 0.10063694267515924, 0.08662420382165605, 0.07898089171974522, 0.045859872611464965, 0.03821656050955414, 0.035668789808917196, 0.030573248407643312, 0.02929936305732484, 0.0267515923566879, 0.024203821656050957, 0.024203821656050957, 0.024203821656050957, 0.022929936305732482, 0.02165605095541401, 0.017834394904458598, 0.017834394904458598, 0.017834394904458598, 0.017834394904458598, 0.017834394904458598, 0.017834394904458598, 0.017834394904458598, 0.017834394904458598, 0.017834394904458598, 0.017834394904458598, 0.02038216560509554, 0.017834394904458598, 0.030573248407643312, 0.04203821656050955, 0.4267515923566879, 0.37070063694267513, 0.0751592356687898, 0.04331210191082802, 0.033121019108280254, 0.02802547770700637, 0.024203821656050957, 0.9375796178343949, 0.9452229299363057, 0.9477707006369427, 0.9464968152866242, 0.9426751592356688, 0.9286624203821656, 0.02802547770700637, 0.025477707006369428, 0.025477707006369428, 0.025477707006369428, 0.03184713375796178, 0.03694267515923567, 0.0267515923566879, 0.02038216560509554, 0.015286624203821656, 0.014012738853503185, 0.014012738853503185, 0.008917197452229299, 0.008917197452229299, 0.007643312101910828, 0.011464968152866241, 0.011464968152866241, 0.008917197452229299, 0.008917197452229299, 0.005095541401273885, 0.005095541401273885, 0.006369426751592357, 0.006369426751592357, 0.006369426751592357, 0.006369426751592357, 0.006369426751592357, 0.006369426751592357, 0.030573248407643312, 0.3554140127388535, 0.3732484076433121, 0.36050955414012736, 0.3146496815286624, 0.29554140127388534, 0.34394904458598724, 0.3796178343949045, 0.4636942675159236, 0.686624203821656, 0.8509554140127389, 0.8840764331210191, 0.9286624203821656, 0.9146496815286624, 0.8662420382165605, 0.8038216560509555, 0.5936305732484076, 0.4942675159235669, 0.16178343949044585, 0.05477707006369427, 0.03821656050955414, 0.017834394904458598, 0.014012738853503185, 0.011464968152866241, 0.007643312101910828, 0.007643312101910828, 0.007643312101910828, 0.008917197452229299, 0.008917197452229299, 0.007643312101910828, 0.01910828025477707, 0.017834394904458598, 0.062420382165605096, 0.01019108280254777, 0.01019108280254777, 0.008917197452229299, 0.008917197452229299, 0.008917197452229299, 0.012738853503184714, 0.012738853503184714, 0.012738853503184714, 0.012738853503184714, 0.012738853503184714, 0.015286624203821656, 0.015286624203821656, 0.014012738853503185, 0.015286624203821656, 0.014012738853503185, 0.012738853503184714, 0.014012738853503185, 0.015286624203821656, 0.8789808917197452, 0.9273885350318471, 0.8076433121019109, 0.049681528662420385, 0.07770700636942675, 0.08662420382165605, 0.1910828025477707, 0.9464968152866242, 0.8840764331210191, 0.4853503184713376, 0.36942675159235666, 0.16178343949044585, 0.10318471337579618, 0.9490445859872612, 0.07261146496815286, 0.049681528662420385, 0.04203821656050955, 0.02929936305732484, 0.02929936305732484, 0.02929936305732484, 0.030573248407643312, 0.030573248407643312, 0.033121019108280254, 0.02929936305732484, 0.02929936305732484, 0.030573248407643312, 0.030573248407643312, 0.030573248407643312, 0.030573248407643312, 0.030573248407643312, 0.030573248407643312, 0.030573248407643312, 0.03184713375796178, 0.03184713375796178, 0.03184713375796178, 0.035668789808917196, 0.035668789808917196, 0.03821656050955414, 0.5949044585987261, 0.1159235668789809, 0.10191082802547771, 0.9388535031847134, 0.12356687898089172, 0.24585987261146497, 0.21146496815286625, 0.29044585987261146, 0.2394904458598726, 0.7273885350318471, 0.8496815286624204, 0.9273885350318471, 0.8993630573248408, 0.7961783439490446, 0.6382165605095541, 0.22929936305732485, 0.28152866242038216, 0.25095541401273885, 0.25477707006369427, 0.2624203821656051, 0.28280254777070063, 0.31210191082802546, 0.3668789808917197, 0.44203821656050957, 0.554140127388535, 0.6828025477707006, 0.8394904458598726], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PsbK.gap.json b/pfam_gap_rates/PsbK.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..05aea0b00f3efb5aa9b574519902dcec89eb249f
--- /dev/null
+++ b/pfam_gap_rates/PsbK.gap.json
@@ -0,0 +1 @@
+{"family": "PsbK", "n_seqs": 103, "length": 41, "gap_rates": [0.21359223300970873, 0.04854368932038835, 0.02912621359223301, 0.02912621359223301, 0.019417475728155338, 0.009708737864077669, 0.009708737864077669, 0.009708737864077669, 0.009708737864077669, 0.009708737864077669, 0.009708737864077669, 0.009708737864077669, 0.009708737864077669, 0.009708737864077669, 0.009708737864077669, 0.009708737864077669, 0.009708737864077669, 0.009708737864077669, 0.009708737864077669, 0.0, 0.0, 0.0, 0.0, 0.009708737864077669, 0.009708737864077669, 0.019417475728155338, 0.009708737864077669, 0.009708737864077669, 0.009708737864077669, 0.009708737864077669, 0.02912621359223301, 0.02912621359223301, 0.02912621359223301, 0.038834951456310676, 0.038834951456310676, 0.038834951456310676, 0.038834951456310676, 0.038834951456310676, 0.038834951456310676, 0.038834951456310676, 0.06796116504854369], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PsbP.gap.json b/pfam_gap_rates/PsbP.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..26dc0b478e0f52af2fa2d4ecc642d9a3a550e902
--- /dev/null
+++ b/pfam_gap_rates/PsbP.gap.json
@@ -0,0 +1 @@
+{"family": "PsbP", "n_seqs": 563, "length": 219, "gap_rates": [0.6980461811722913, 0.5630550621669627, 0.5062166962699822, 0.458259325044405, 0.42451154529307283, 0.41563055062166965, 0.3960923623445826, 0.911190053285968, 0.36589698046181174, 0.3285968028419183, 0.29307282415630553, 0.22735346358792186, 0.17229129662522202, 0.1669626998223801, 0.1669626998223801, 0.1669626998223801, 0.16518650088809947, 0.16341030195381884, 0.16341030195381884, 0.16163410301953818, 0.15985790408525755, 0.15808170515097691, 0.15452930728241562, 0.17406749555950266, 0.15985790408525755, 0.152753108348135, 0.14564831261101244, 0.4227353463587922, 0.6021314387211367, 0.8543516873889876, 0.9396092362344582, 0.9271758436944938, 0.738898756660746, 0.5346358792184724, 0.1492007104795737, 0.17939609236234458, 0.17584369449378331, 0.12788632326820604, 0.7850799289520426, 0.8507992895204263, 0.8632326820603907, 0.872113676731794, 0.8792184724689165, 0.8845470692717584, 0.8792184724689165, 0.866785079928952, 0.8561278863232682, 0.8419182948490231, 0.7779751332149201, 0.11545293072824156, 0.11545293072824156, 0.11367673179396093, 0.11900532859680284, 0.1172291296625222, 0.11367673179396093, 0.10124333925399645, 0.09769094138543517, 0.10301953818827708, 0.10479573712255773, 0.08703374777975133, 0.06571936056838366, 0.06571936056838366, 0.0763765541740675, 0.06927175843694494, 0.06216696269982238, 0.8490230905861457, 0.8845470692717584, 0.9005328596802842, 0.9378330373001776, 0.8863232682060391, 0.8632326820603907, 0.8401420959147424, 0.056838365896980464, 0.0994671403197158, 0.1172291296625222, 0.12255772646536411, 0.11367673179396093, 0.4724689165186501, 0.8472468916518651, 0.7158081705150977, 0.11545293072824156, 0.0852575488454707, 0.07282415630550622, 0.07282415630550622, 0.06571936056838366, 0.06039076376554174, 0.0586145648312611, 0.0497335701598579, 0.03907637655417407, 0.037300177619893425, 0.037300177619893425, 0.8969804618117229, 0.9058614564831261, 0.9058614564831261, 0.8934280639431617, 0.03374777975133215, 0.03197158081705151, 0.037300177619893425, 0.037300177619893425, 0.03907637655417407, 0.03374777975133215, 0.12078152753108348, 0.06394316163410302, 0.07104795737122557, 0.07460035523978685, 0.7584369449378331, 0.9484902309058615, 0.7904085257548845, 0.7140319715808171, 0.2202486678507993, 0.2024866785079929, 0.17761989342806395, 0.31261101243339257, 0.29307282415630553, 0.07992895204262877, 0.7744227353463587, 0.8898756660746003, 0.9005328596802842, 0.8969804618117229, 0.8809946714031972, 0.7335701598579041, 0.047957371225577264, 0.03374777975133215, 0.03197158081705151, 0.028419182948490232, 0.028419182948490232, 0.028419182948490232, 0.028419182948490232, 0.03019538188277087, 0.03197158081705151, 0.03374777975133215, 0.10657193605683836, 0.1811722912966252, 0.1261101243339254, 0.35879218472468916, 0.35346358792184723, 0.03907637655417407, 0.03019538188277087, 0.03374777975133215, 0.02664298401420959, 0.02486678507992895, 0.028419182948490232, 0.037300177619893425, 0.035523978685612786, 0.028419182948490232, 0.05328596802841918, 0.14209591474245115, 0.13143872113676733, 0.13321492007104796, 0.8561278863232682, 0.8614564831261101, 0.866785079928952, 0.9058614564831261, 0.9289520426287744, 0.9289520426287744, 0.9289520426287744, 0.9396092362344582, 0.9360568383658969, 0.9289520426287744, 0.9289520426287744, 0.9271758436944938, 0.8756660746003553, 0.8650088809946714, 0.8561278863232682, 0.8543516873889876, 0.08880994671403197, 0.12078152753108348, 0.5364120781527532, 0.8650088809946714, 0.8188277087033747, 0.15630550621669628, 0.13321492007104796, 0.10657193605683836, 0.04440497335701599, 0.03019538188277087, 0.028419182948490232, 0.028419182948490232, 0.03019538188277087, 0.028419182948490232, 0.03019538188277087, 0.03019538188277087, 0.9182948490230906, 0.028419182948490232, 0.03197158081705151, 0.03197158081705151, 0.9200710479573713, 0.9307282415630551, 0.9129662522202486, 0.03197158081705151, 0.03197158081705151, 0.03019538188277087, 0.03374777975133215, 0.035523978685612786, 0.035523978685612786, 0.03197158081705151, 0.03374777975133215, 0.03907637655417407, 0.04262877442273535, 0.047957371225577264, 0.0497335701598579, 0.047957371225577264, 0.047957371225577264, 0.0497335701598579, 0.055062166962699825, 0.8330373001776199, 0.056838365896980464, 0.056838365896980464, 0.0586145648312611, 0.06039076376554174, 0.0586145648312611, 0.06216696269982238, 0.06571936056838366, 0.0674955595026643, 0.06927175843694494, 0.07282415630550622, 0.07460035523978685, 0.07992895204262877, 0.12433392539964476, 0.4724689165186501], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PspB.gap.json b/pfam_gap_rates/PspB.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..694f7edccacbd622841133f5721970cc0e7bf570
--- /dev/null
+++ b/pfam_gap_rates/PspB.gap.json
@@ -0,0 +1 @@
+{"family": "PspB", "n_seqs": 123, "length": 73, "gap_rates": [0.9186991869918699, 0.7317073170731707, 0.4065040650406504, 0.3089430894308943, 0.2845528455284553, 0.21951219512195122, 0.17073170731707318, 0.11382113821138211, 0.10569105691056911, 0.07317073170731707, 0.07317073170731707, 0.06504065040650407, 0.06504065040650407, 0.06504065040650407, 0.06504065040650407, 0.06504065040650407, 0.06504065040650407, 0.06504065040650407, 0.056910569105691054, 0.06504065040650407, 0.056910569105691054, 0.04878048780487805, 0.04065040650406504, 0.04065040650406504, 0.04065040650406504, 0.024390243902439025, 0.024390243902439025, 0.024390243902439025, 0.07317073170731707, 0.032520325203252036, 0.032520325203252036, 0.016260162601626018, 0.016260162601626018, 0.016260162601626018, 0.016260162601626018, 0.016260162601626018, 0.016260162601626018, 0.024390243902439025, 0.024390243902439025, 0.024390243902439025, 0.032520325203252036, 0.032520325203252036, 0.032520325203252036, 0.024390243902439025, 0.024390243902439025, 0.024390243902439025, 0.024390243902439025, 0.024390243902439025, 0.016260162601626018, 0.016260162601626018, 0.016260162601626018, 0.016260162601626018, 0.016260162601626018, 0.016260162601626018, 0.016260162601626018, 0.016260162601626018, 0.016260162601626018, 0.016260162601626018, 0.016260162601626018, 0.016260162601626018, 0.016260162601626018, 0.016260162601626018, 0.016260162601626018, 0.016260162601626018, 0.056910569105691054, 0.07317073170731707, 0.08943089430894309, 0.08943089430894309, 0.0975609756097561, 0.10569105691056911, 0.14634146341463414, 0.16260162601626016, 0.43089430894308944], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PuR_N.gap.json b/pfam_gap_rates/PuR_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..0b36adc1264b09d38c42f9c4c21fb74b9ba7c352
--- /dev/null
+++ b/pfam_gap_rates/PuR_N.gap.json
@@ -0,0 +1 @@
+{"family": "PuR_N", "n_seqs": 312, "length": 70, "gap_rates": [0.1955128205128205, 0.0641025641025641, 0.0641025641025641, 0.0641025641025641, 0.0641025641025641, 0.05448717948717949, 0.05448717948717949, 0.05128205128205128, 0.01282051282051282, 0.01282051282051282, 0.01282051282051282, 0.01282051282051282, 0.01282051282051282, 0.009615384615384616, 0.009615384615384616, 0.00641025641025641, 0.009615384615384616, 0.00641025641025641, 0.003205128205128205, 0.003205128205128205, 0.003205128205128205, 0.003205128205128205, 0.003205128205128205, 0.003205128205128205, 0.003205128205128205, 0.003205128205128205, 0.003205128205128205, 0.003205128205128205, 0.003205128205128205, 0.003205128205128205, 0.003205128205128205, 0.003205128205128205, 0.003205128205128205, 0.003205128205128205, 0.003205128205128205, 0.003205128205128205, 0.003205128205128205, 0.003205128205128205, 0.003205128205128205, 0.003205128205128205, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.003205128205128205, 0.0, 0.0, 0.0, 0.0, 0.003205128205128205, 0.003205128205128205, 0.00641025641025641, 0.00641025641025641, 0.00641025641025641, 0.00641025641025641, 0.00641025641025641, 0.00641025641025641, 0.00641025641025641, 0.01282051282051282, 0.03205128205128205, 0.1282051282051282], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PurS.gap.json b/pfam_gap_rates/PurS.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..11ba115f3711b1549e44a7496cdbb7b99fdd9d2c
--- /dev/null
+++ b/pfam_gap_rates/PurS.gap.json
@@ -0,0 +1 @@
+{"family": "PurS", "n_seqs": 881, "length": 77, "gap_rates": [0.5493757094211124, 0.11804767309875142, 0.060158910329171394, 0.03518728717366629, 0.026106696935300794, 0.02383654937570942, 0.011350737797956867, 0.01021566401816118, 0.009080590238365494, 0.011350737797956867, 0.009080590238365494, 0.00681044267877412, 0.004540295119182747, 0.004540295119182747, 0.004540295119182747, 0.00340522133938706, 0.00340522133938706, 0.00340522133938706, 0.00340522133938706, 0.00340522133938706, 0.00340522133938706, 0.00340522133938706, 0.0022701475595913734, 0.0022701475595913734, 0.0022701475595913734, 0.0022701475595913734, 0.0022701475595913734, 0.004540295119182747, 0.00340522133938706, 0.00340522133938706, 0.07264472190692395, 0.00681044267877412, 0.011350737797956867, 0.01021566401816118, 0.00340522133938706, 0.0022701475595913734, 0.00340522133938706, 0.00340522133938706, 0.00340522133938706, 0.00340522133938706, 0.00340522133938706, 0.00340522133938706, 0.00340522133938706, 0.00340522133938706, 0.00340522133938706, 0.00340522133938706, 0.07150964812712826, 0.10556186152099886, 0.14074914869466515, 0.19182746878547105, 0.19069239500567536, 0.13961407491486946, 0.094211123723042, 0.03518728717366629, 0.009080590238365494, 0.00681044267877412, 0.0056753688989784334, 0.0056753688989784334, 0.0056753688989784334, 0.0056753688989784334, 0.0056753688989784334, 0.007945516458569807, 0.0056753688989784334, 0.00681044267877412, 0.0056753688989784334, 0.00681044267877412, 0.00681044267877412, 0.00681044267877412, 0.007945516458569807, 0.007945516458569807, 0.007945516458569807, 0.007945516458569807, 0.01362088535754824, 0.10783200908059024, 0.1191827468785471, 0.23269012485811577, 0.4948921679909194], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Pur_ac_phosph_N.gap.json b/pfam_gap_rates/Pur_ac_phosph_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..5155022f288ab3d438ffa98c681330dd49cfe42a
--- /dev/null
+++ b/pfam_gap_rates/Pur_ac_phosph_N.gap.json
@@ -0,0 +1 @@
+{"family": "Pur_ac_phosph_N", "n_seqs": 1539, "length": 122, "gap_rates": [0.5146198830409356, 0.4522417153996101, 0.3807667316439246, 0.350227420402859, 0.2618583495776478, 0.22157244964262507, 0.1949317738791423, 0.1760883690708252, 0.15139701104613384, 0.13840155945419103, 0.5860948667966212, 0.22871994801819362, 0.06302794022092267, 0.05523066926575698, 0.04873294346978557, 0.02014294996751137, 0.01949317738791423, 0.01949317738791423, 0.018193632228719947, 0.017543859649122806, 0.017543859649122806, 0.017543859649122806, 0.017543859649122806, 0.017543859649122806, 0.9486679662118258, 0.016244314489928524, 0.9129304743339831, 0.8765432098765432, 0.3755685510071475, 0.015594541910331383, 0.012345679012345678, 0.011046133853151396, 0.011046133853151396, 0.011046133853151396, 0.011046133853151396, 0.010396361273554255, 0.010396361273554255, 0.010396361273554255, 0.009746588693957114, 0.009746588693957114, 0.03183885640025991, 0.022092267706302793, 0.884990253411306, 0.9135802469135802, 0.9467186484730344, 0.9311241065627031, 0.9031838856400259, 0.8596491228070176, 0.017543859649122806, 0.0396361273554256, 0.03248862897985705, 0.03378817413905133, 0.02599090318388564, 0.030539311241065625, 0.06432748538011696, 0.06887589343729694, 0.09551656920077972, 0.12280701754385964, 0.17218973359324236, 0.17868745938921377, 0.23911630929174787, 0.23196881091617932, 0.6016894087069525, 0.6770630279402209, 0.7076023391812866, 0.7706302794022092, 0.8024691358024691, 0.9005847953216374, 0.944769330734243, 0.9337231968810916, 0.8128654970760234, 0.788174139051332, 0.7218973359324237, 0.695906432748538, 0.6588693957115009, 0.5627030539311241, 0.11046133853151396, 0.06562703053931124, 0.044184535412605586, 0.02664067576348278, 0.01299545159194282, 0.00649772579597141, 0.004548408057179987, 0.002599090318388564, 0.002599090318388564, 0.002599090318388564, 0.002599090318388564, 0.002599090318388564, 0.004548408057179987, 0.003898635477582846, 0.003898635477582846, 0.003898635477582846, 0.003898635477582846, 0.003898635477582846, 0.003898635477582846, 0.005847953216374269, 0.00649772579597141, 0.00649772579597141, 0.009096816114359974, 0.009096816114359974, 0.011046133853151396, 0.01299545159194282, 0.01299545159194282, 0.015594541910331383, 0.022742040285899934, 0.9057829759584145, 0.03443794671864847, 0.4359974009096816, 0.7628330084470435, 0.8999350227420403, 0.852501624431449, 0.6712150747238467, 0.299545159194282, 0.2157244964262508, 0.18908382066276802, 0.16569200779727095, 0.17348927875243664, 0.18128654970760233, 0.19103313840155944, 0.20077972709551656, 0.25471085120207926, 0.4282001299545159], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Put_Phosphatase.gap.json b/pfam_gap_rates/Put_Phosphatase.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b5330e8e55fce42660cd5469e108fc6dd0c9c946
--- /dev/null
+++ b/pfam_gap_rates/Put_Phosphatase.gap.json
@@ -0,0 +1 @@
+{"family": "Put_Phosphatase", "n_seqs": 313, "length": 250, "gap_rates": [0.7156549520766773, 0.2108626198083067, 0.17252396166134185, 0.15654952076677317, 0.14696485623003194, 0.14057507987220447, 0.14057507987220447, 0.14057507987220447, 0.14057507987220447, 0.13738019169329074, 0.13738019169329074, 0.13738019169329074, 0.134185303514377, 0.134185303514377, 0.134185303514377, 0.134185303514377, 0.134185303514377, 0.134185303514377, 0.134185303514377, 0.134185303514377, 0.134185303514377, 0.134185303514377, 0.134185303514377, 0.134185303514377, 0.134185303514377, 0.134185303514377, 0.134185303514377, 0.1501597444089457, 0.14696485623003194, 0.26517571884984026, 0.15654952076677317, 0.14057507987220447, 0.14376996805111822, 0.13738019169329074, 0.14057507987220447, 0.14376996805111822, 0.14057507987220447, 0.14057507987220447, 0.5431309904153354, 0.5143769968051118, 0.5015974440894568, 0.14057507987220447, 0.13738019169329074, 0.14057507987220447, 0.13738019169329074, 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\ No newline at end of file
diff --git a/pfam_gap_rates/Pyridox_oxase_2.gap.json b/pfam_gap_rates/Pyridox_oxase_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c98c5d9e3bf363745417ee18616e4b8ef69fe47e
--- /dev/null
+++ b/pfam_gap_rates/Pyridox_oxase_2.gap.json
@@ -0,0 +1 @@
+{"family": "Pyridox_oxase_2", "n_seqs": 290, "length": 145, "gap_rates": [0.3586206896551724, 0.2413793103448276, 0.19655172413793104, 0.1896551724137931, 0.19310344827586207, 0.21724137931034482, 0.14482758620689656, 0.14482758620689656, 0.1413793103448276, 0.1413793103448276, 0.13448275862068965, 0.13448275862068965, 0.1413793103448276, 0.5551724137931034, 0.9103448275862069, 0.9310344827586207, 0.596551724137931, 0.39655172413793105, 0.2896551724137931, 0.09655172413793103, 0.08275862068965517, 0.07241379310344828, 0.07241379310344828, 0.06206896551724138, 0.06206896551724138, 0.05862068965517241, 0.05862068965517241, 0.05517241379310345, 0.05517241379310345, 0.05172413793103448, 0.05517241379310345, 0.803448275862069, 0.5793103448275863, 0.18620689655172415, 0.08620689655172414, 0.06551724137931035, 0.05172413793103448, 0.7551724137931034, 0.8241379310344827, 0.906896551724138, 0.9379310344827586, 0.9103448275862069, 0.8586206896551725, 0.8068965517241379, 0.7517241379310344, 0.04827586206896552, 0.041379310344827586, 0.041379310344827586, 0.03793103448275862, 0.03793103448275862, 0.034482758620689655, 0.03793103448275862, 0.03793103448275862, 0.03793103448275862, 0.03793103448275862, 0.03793103448275862, 0.03793103448275862, 0.03793103448275862, 0.03793103448275862, 0.3586206896551724, 0.506896551724138, 0.8517241379310345, 0.5793103448275863, 0.7, 0.7137931034482758, 0.7344827586206897, 0.7379310344827587, 0.7482758620689656, 0.7551724137931034, 0.896551724137931, 0.9344827586206896, 0.9482758620689655, 0.9448275862068966, 0.9275862068965517, 0.7827586206896552, 0.7517241379310344, 0.7413793103448276, 0.7379310344827587, 0.7172413793103448, 0.7068965517241379, 0.7, 0.4689655172413793, 0.1793103448275862, 0.05517241379310345, 0.08275862068965517, 0.02413793103448276, 0.02413793103448276, 0.020689655172413793, 0.020689655172413793, 0.020689655172413793, 0.020689655172413793, 0.020689655172413793, 0.020689655172413793, 0.020689655172413793, 0.010344827586206896, 0.006896551724137931, 0.006896551724137931, 0.006896551724137931, 0.006896551724137931, 0.010344827586206896, 0.010344827586206896, 0.6793103448275862, 0.7241379310344828, 0.7344827586206897, 0.7827586206896552, 0.8, 0.8103448275862069, 0.8448275862068966, 0.8793103448275862, 0.9241379310344827, 0.8931034482758621, 0.8655172413793103, 0.8310344827586207, 0.8068965517241379, 0.8, 0.7689655172413793, 0.7275862068965517, 0.7068965517241379, 0.02413793103448276, 0.017241379310344827, 0.013793103448275862, 0.010344827586206896, 0.010344827586206896, 0.010344827586206896, 0.006896551724137931, 0.006896551724137931, 0.006896551724137931, 0.010344827586206896, 0.010344827586206896, 0.010344827586206896, 0.010344827586206896, 0.013793103448275862, 0.010344827586206896, 0.010344827586206896, 0.010344827586206896, 0.010344827586206896, 0.013793103448275862, 0.013793103448275862, 0.013793103448275862, 0.013793103448275862, 0.017241379310344827, 0.027586206896551724, 0.03103448275862069, 0.07931034482758621, 0.18620689655172415], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/QCR10.gap.json b/pfam_gap_rates/QCR10.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..272cc8ae3bde80ecd4fe703b34aed1be3d3d4b93
--- /dev/null
+++ b/pfam_gap_rates/QCR10.gap.json
@@ -0,0 +1 @@
+{"family": "QCR10", "n_seqs": 113, "length": 64, "gap_rates": [0.5398230088495575, 0.24778761061946902, 0.168141592920354, 0.1504424778761062, 0.13274336283185842, 0.11504424778761062, 0.09734513274336283, 0.07964601769911504, 0.05309734513274336, 0.04424778761061947, 0.04424778761061947, 0.02654867256637168, 0.008849557522123894, 0.008849557522123894, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.008849557522123894, 0.017699115044247787, 0.017699115044247787, 0.017699115044247787, 0.017699115044247787, 0.017699115044247787, 0.9292035398230089, 0.02654867256637168, 0.08849557522123894, 0.08849557522123894, 0.09734513274336283, 0.09734513274336283, 0.09734513274336283, 0.11504424778761062, 0.11504424778761062, 0.11504424778761062, 0.17699115044247787, 0.2920353982300885], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/QueF.gap.json b/pfam_gap_rates/QueF.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..76f1b9da1970fc226555417f078d7a5255448cfd
--- /dev/null
+++ b/pfam_gap_rates/QueF.gap.json
@@ -0,0 +1 @@
+{"family": "QueF", "n_seqs": 937, "length": 79, "gap_rates": [0.004268943436499467, 0.0032017075773745998, 0.0032017075773745998, 0.0032017075773745998, 0.0021344717182497333, 0.0021344717182497333, 0.0021344717182497333, 0.0021344717182497333, 0.005336179295624333, 0.0021344717182497333, 0.0021344717182497333, 0.0021344717182497333, 0.0021344717182497333, 0.0032017075773745998, 0.23799359658484526, 0.22838847385272146, 0.0032017075773745998, 0.0032017075773745998, 0.0010672358591248667, 0.0010672358591248667, 0.0010672358591248667, 0.0010672358591248667, 0.0010672358591248667, 0.0010672358591248667, 0.0010672358591248667, 0.0010672358591248667, 0.0010672358591248667, 0.0010672358591248667, 0.0010672358591248667, 0.0010672358591248667, 0.0010672358591248667, 0.0010672358591248667, 0.0010672358591248667, 0.0010672358591248667, 0.0010672358591248667, 0.0010672358591248667, 0.0010672358591248667, 0.0010672358591248667, 0.0021344717182497333, 0.0021344717182497333, 0.0010672358591248667, 0.0021344717182497333, 0.0021344717182497333, 0.0021344717182497333, 0.0021344717182497333, 0.0021344717182497333, 0.0021344717182497333, 0.0021344717182497333, 0.0032017075773745998, 0.0021344717182497333, 0.0021344717182497333, 0.0021344717182497333, 0.0021344717182497333, 0.0021344717182497333, 0.004268943436499467, 0.004268943436499467, 0.0032017075773745998, 0.0032017075773745998, 0.0032017075773745998, 0.004268943436499467, 0.004268943436499467, 0.0064034151547491995, 0.005336179295624333, 0.005336179295624333, 0.0064034151547491995, 0.0064034151547491995, 0.0064034151547491995, 0.0064034151547491995, 0.0064034151547491995, 0.0064034151547491995, 0.0064034151547491995, 0.007470651013874066, 0.007470651013874066, 0.013874066168623266, 0.026680896478121666, 0.05656350053361793, 0.15795090715048027, 0.3468516542155816, 0.5090715048025614], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/R3H-assoc.gap.json b/pfam_gap_rates/R3H-assoc.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..003346461ca85204f01cef2ab91e0e76b7f19d0f
--- /dev/null
+++ b/pfam_gap_rates/R3H-assoc.gap.json
@@ -0,0 +1 @@
+{"family": "R3H-assoc", "n_seqs": 181, "length": 171, "gap_rates": [0.6685082872928176, 0.56353591160221, 0.4530386740331492, 0.32044198895027626, 0.287292817679558, 0.2430939226519337, 0.23204419889502761, 0.22099447513812154, 0.22099447513812154, 0.17679558011049723, 0.1878453038674033, 0.16574585635359115, 0.19889502762430938, 0.30939226519337015, 0.2596685082872928, 0.08287292817679558, 0.0718232044198895, 0.06077348066298342, 0.04419889502762431, 0.022099447513812154, 0.022099447513812154, 0.022099447513812154, 0.022099447513812154, 0.022099447513812154, 0.022099447513812154, 0.022099447513812154, 0.022099447513812154, 0.022099447513812154, 0.022099447513812154, 0.022099447513812154, 0.022099447513812154, 0.022099447513812154, 0.027624309392265192, 0.03314917127071823, 0.03314917127071823, 0.03314917127071823, 0.4088397790055249, 0.3812154696132597, 0.3756906077348066, 0.36464088397790057, 0.35911602209944754, 0.6906077348066298, 0.6519337016574586, 0.36464088397790057, 0.36464088397790057, 0.35911602209944754, 0.36464088397790057, 0.3701657458563536, 0.36464088397790057, 0.9281767955801105, 0.8342541436464088, 0.7237569060773481, 0.7348066298342542, 0.712707182320442, 0.6740331491712708, 0.2430939226519337, 0.06629834254143646, 0.06077348066298342, 0.055248618784530384, 0.027624309392265192, 0.03867403314917127, 0.03314917127071823, 0.022099447513812154, 0.027624309392265192, 0.027624309392265192, 0.022099447513812154, 0.022099447513812154, 0.022099447513812154, 0.022099447513812154, 0.027624309392265192, 0.022099447513812154, 0.022099447513812154, 0.022099447513812154, 0.022099447513812154, 0.03867403314917127, 0.6574585635359116, 0.6574585635359116, 0.6629834254143646, 0.8674033149171271, 0.6574585635359116, 0.6574585635359116, 0.6353591160220995, 0.13812154696132597, 0.11049723756906077, 0.11602209944751381, 0.10497237569060773, 0.09944751381215469, 0.09392265193370165, 0.055248618784530384, 0.06077348066298342, 0.06077348066298342, 0.06077348066298342, 0.0718232044198895, 0.07734806629834254, 0.0718232044198895, 0.07734806629834254, 0.09392265193370165, 0.09944751381215469, 0.08839779005524862, 0.08839779005524862, 0.10497237569060773, 0.2265193370165746, 0.2265193370165746, 0.19889502762430938, 0.13812154696132597, 0.11602209944751381, 0.12154696132596685, 0.12154696132596685, 0.11602209944751381, 0.1270718232044199, 0.15469613259668508, 0.1878453038674033, 0.19889502762430938, 0.2154696132596685, 0.5414364640883977, 0.8453038674033149, 0.856353591160221, 0.8895027624309392, 0.8950276243093923, 0.9116022099447514, 0.9392265193370166, 0.9392265193370166, 0.9392265193370166, 0.9447513812154696, 0.9447513812154696, 0.9392265193370166, 0.9392265193370166, 0.9171270718232044, 0.9060773480662984, 0.8950276243093923, 0.8784530386740331, 0.856353591160221, 0.8397790055248618, 0.7182320441988951, 0.712707182320442, 0.6629834254143646, 0.6353591160220995, 0.580110497237569, 0.5359116022099447, 0.3867403314917127, 0.3701657458563536, 0.35359116022099446, 0.35911602209944754, 0.32044198895027626, 0.7624309392265194, 0.7624309392265194, 0.9060773480662984, 0.9281767955801105, 0.9171270718232044, 0.7845303867403315, 0.7624309392265194, 0.7348066298342542, 0.281767955801105, 0.24861878453038674, 0.2430939226519337, 0.23204419889502761, 0.23204419889502761, 0.2154696132596685, 0.19889502762430938, 0.19337016574585636, 0.19337016574585636, 0.19889502762430938, 0.20441988950276244, 0.19889502762430938, 0.22099447513812154, 0.2265193370165746, 0.23204419889502761, 0.23204419889502761, 0.2596685082872928, 0.35359116022099446, 0.3867403314917127], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/RAB3GAP2_C.gap.json b/pfam_gap_rates/RAB3GAP2_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..1acc105f6a755f90eef4c28cc723c592b036f2df
--- /dev/null
+++ b/pfam_gap_rates/RAB3GAP2_C.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/RAB3GAP2_N.gap.json b/pfam_gap_rates/RAB3GAP2_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..71cbdaef73aa6f0ea1037e1f928e877d489a279f
--- /dev/null
+++ b/pfam_gap_rates/RAB3GAP2_N.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/RCC1.gap.json b/pfam_gap_rates/RCC1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..186bb5ef60d7e086fdd1ef7c034e93887c78d76f
--- /dev/null
+++ b/pfam_gap_rates/RCC1.gap.json
@@ -0,0 +1 @@
+{"family": "RCC1", "n_seqs": 5000, "length": 66, "gap_rates": [0.4746, 0.2284, 0.1188, 0.042, 0.0264, 0.0114, 0.0082, 0.0042, 0.0096, 0.0078, 0.0046, 0.0006, 0.0024, 0.0004, 0.0002, 0.0, 0.0, 0.947, 0.0004, 0.0158, 0.0136, 0.8492, 0.9476, 0.9078, 0.7242, 0.0144, 0.0384, 0.009, 0.8898, 0.9248, 0.9396, 0.9144, 0.8602, 0.056, 0.0366, 0.0138, 0.006, 0.0068, 0.004, 0.9454, 0.0174, 0.0284, 0.0522, 0.0668, 0.2208, 0.2062, 0.8088, 0.908, 0.934, 0.8844, 0.7304, 0.026, 0.0274, 0.0282, 0.0288, 0.0296, 0.0326, 0.0382, 0.0418, 0.0454, 0.0614, 0.07, 0.0732, 0.08, 0.1268, 0.2678], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/RLAN.gap.json b/pfam_gap_rates/RLAN.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..4a7ced04e264cdd255b1bd54d5bb9362aac83717
--- /dev/null
+++ b/pfam_gap_rates/RLAN.gap.json
@@ -0,0 +1 @@
+{"family": "RLAN", "n_seqs": 166, "length": 191, "gap_rates": [0.18072289156626506, 0.08433734939759036, 0.0783132530120482, 0.07228915662650602, 0.07228915662650602, 0.07228915662650602, 0.07228915662650602, 0.07228915662650602, 0.060240963855421686, 0.10843373493975904, 0.0963855421686747, 0.1686746987951807, 0.9216867469879518, 0.05421686746987952, 0.04216867469879518, 0.024096385542168676, 0.018072289156626505, 0.018072289156626505, 0.018072289156626505, 0.018072289156626505, 0.012048192771084338, 0.012048192771084338, 0.012048192771084338, 0.012048192771084338, 0.018072289156626505, 0.012048192771084338, 0.012048192771084338, 0.012048192771084338, 0.012048192771084338, 0.012048192771084338, 0.012048192771084338, 0.012048192771084338, 0.012048192771084338, 0.012048192771084338, 0.012048192771084338, 0.012048192771084338, 0.012048192771084338, 0.012048192771084338, 0.012048192771084338, 0.012048192771084338, 0.012048192771084338, 0.012048192771084338, 0.012048192771084338, 0.012048192771084338, 0.012048192771084338, 0.012048192771084338, 0.006024096385542169, 0.006024096385542169, 0.006024096385542169, 0.006024096385542169, 0.006024096385542169, 0.006024096385542169, 0.012048192771084338, 0.012048192771084338, 0.012048192771084338, 0.012048192771084338, 0.012048192771084338, 0.012048192771084338, 0.018072289156626505, 0.018072289156626505, 0.018072289156626505, 0.024096385542168676, 0.018072289156626505, 0.04216867469879518, 0.060240963855421686, 0.04819277108433735, 0.04216867469879518, 0.04216867469879518, 0.9337349397590361, 0.9457831325301205, 0.9457831325301205, 0.9457831325301205, 0.9457831325301205, 0.9457831325301205, 0.9457831325301205, 0.9457831325301205, 0.9457831325301205, 0.9457831325301205, 0.9457831325301205, 0.9457831325301205, 0.9457831325301205, 0.9457831325301205, 0.9457831325301205, 0.9457831325301205, 0.9457831325301205, 0.9457831325301205, 0.9457831325301205, 0.9457831325301205, 0.9457831325301205, 0.9457831325301205, 0.9457831325301205, 0.9457831325301205, 0.9457831325301205, 0.9457831325301205, 0.9457831325301205, 0.9457831325301205, 0.9457831325301205, 0.9457831325301205, 0.9457831325301205, 0.9457831325301205, 0.9457831325301205, 0.9457831325301205, 0.9337349397590361, 0.9337349397590361, 0.04819277108433735, 0.07228915662650602, 0.0783132530120482, 0.07228915662650602, 0.07228915662650602, 0.060240963855421686, 0.05421686746987952, 0.04819277108433735, 0.4457831325301205, 0.7168674698795181, 0.9337349397590361, 0.8313253012048193, 0.6144578313253012, 0.07228915662650602, 0.05421686746987952, 0.03614457831325301, 0.030120481927710843, 0.024096385542168676, 0.024096385542168676, 0.024096385542168676, 0.024096385542168676, 0.024096385542168676, 0.024096385542168676, 0.030120481927710843, 0.024096385542168676, 0.024096385542168676, 0.024096385542168676, 0.024096385542168676, 0.024096385542168676, 0.024096385542168676, 0.024096385542168676, 0.024096385542168676, 0.024096385542168676, 0.024096385542168676, 0.024096385542168676, 0.024096385542168676, 0.024096385542168676, 0.024096385542168676, 0.024096385542168676, 0.024096385542168676, 0.024096385542168676, 0.024096385542168676, 0.030120481927710843, 0.030120481927710843, 0.030120481927710843, 0.030120481927710843, 0.030120481927710843, 0.030120481927710843, 0.030120481927710843, 0.030120481927710843, 0.030120481927710843, 0.030120481927710843, 0.030120481927710843, 0.030120481927710843, 0.030120481927710843, 0.030120481927710843, 0.03614457831325301, 0.03614457831325301, 0.03614457831325301, 0.5301204819277109, 0.12650602409638553, 0.9397590361445783, 0.0963855421686747, 0.04216867469879518, 0.04216867469879518, 0.04216867469879518, 0.04216867469879518, 0.04216867469879518, 0.04819277108433735, 0.05421686746987952, 0.04819277108433735, 0.04819277108433735, 0.04819277108433735, 0.04819277108433735, 0.04819277108433735, 0.04819277108433735, 0.05421686746987952, 0.060240963855421686, 0.060240963855421686, 0.060240963855421686, 0.07228915662650602, 0.0783132530120482, 0.1144578313253012, 0.13253012048192772, 0.20481927710843373, 0.39759036144578314, 0.8313253012048193], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/RMI1_N.gap.json b/pfam_gap_rates/RMI1_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c9c4d75b9feae6de0332b62832d34db8a54a7361
--- /dev/null
+++ b/pfam_gap_rates/RMI1_N.gap.json
@@ -0,0 +1 @@
+{"family": "RMI1_N", "n_seqs": 490, "length": 256, "gap_rates": [0.9244897959183673, 0.8489795918367347, 0.7673469387755102, 0.7387755102040816, 0.7326530612244898, 0.5857142857142857, 0.5591836734693878, 0.5469387755102041, 0.5428571428571428, 0.5306122448979592, 0.5265306122448979, 0.5244897959183673, 0.5244897959183673, 0.5244897959183673, 0.5265306122448979, 0.5244897959183673, 0.5204081632653061, 0.5122448979591837, 0.5040816326530613, 0.5122448979591837, 0.5122448979591837, 0.5102040816326531, 0.5795918367346938, 0.5918367346938775, 0.7755102040816326, 0.8734693877551021, 0.8204081632653061, 0.6795918367346939, 0.5469387755102041, 0.5551020408163265, 0.4775510204081633, 0.46938775510204084, 0.45102040816326533, 0.44285714285714284, 0.4387755102040816, 0.4326530612244898, 0.4142857142857143, 0.4122448979591837, 0.4, 0.39387755102040817, 0.38571428571428573, 0.3816326530612245, 0.3816326530612245, 0.37551020408163266, 0.3693877551020408, 0.3673469387755102, 0.3673469387755102, 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\ No newline at end of file
diff --git a/pfam_gap_rates/RNA12.gap.json b/pfam_gap_rates/RNA12.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..73a9b68ba55b35e8cf6216169a907f3e20587b18
--- /dev/null
+++ b/pfam_gap_rates/RNA12.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/RNA_binding.gap.json b/pfam_gap_rates/RNA_binding.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b02c117fcb50d2b7c085b2a81770138b96b04ea6
--- /dev/null
+++ b/pfam_gap_rates/RNA_binding.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/RNA_helicase.gap.json b/pfam_gap_rates/RNA_helicase.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..bec32b955ba9552ce40b300e6a486003ba5a635c
--- /dev/null
+++ b/pfam_gap_rates/RNA_helicase.gap.json
@@ -0,0 +1 @@
+{"family": "RNA_helicase", "n_seqs": 109, "length": 117, "gap_rates": [0.30275229357798167, 0.01834862385321101, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.42201834862385323, 0.3944954128440367, 0.4036697247706422, 0.3944954128440367, 0.3486238532110092, 0.3486238532110092, 0.5045871559633027, 0.5137614678899083, 0.42201834862385323, 0.908256880733945, 0.926605504587156, 0.944954128440367, 0.944954128440367, 0.9174311926605505, 0.908256880733945, 0.5229357798165137, 0.3302752293577982, 0.2018348623853211, 0.10091743119266056, 0.12844036697247707, 0.01834862385321101, 0.009174311926605505, 0.01834862385321101, 0.05504587155963303, 0.11009174311926606, 0.8440366972477065, 0.11009174311926606, 0.027522935779816515, 0.009174311926605505, 0.009174311926605505, 0.01834862385321101, 0.009174311926605505, 0.009174311926605505, 0.009174311926605505, 0.009174311926605505, 0.009174311926605505, 0.009174311926605505, 0.009174311926605505, 0.9357798165137615, 0.009174311926605505, 0.009174311926605505, 0.009174311926605505, 0.009174311926605505, 0.01834862385321101, 0.027522935779816515, 0.027522935779816515, 0.01834862385321101, 0.01834862385321101, 0.027522935779816515, 0.027522935779816515, 0.03669724770642202, 0.045871559633027525, 0.06422018348623854, 0.28440366972477066, 0.3302752293577982, 0.8073394495412844, 0.8348623853211009, 0.8073394495412844, 0.7247706422018348, 0.3761467889908257, 0.926605504587156, 0.2018348623853211, 0.1743119266055046, 0.1559633027522936, 0.1651376146788991, 0.1651376146788991, 0.1559633027522936, 0.1651376146788991, 0.1651376146788991, 0.1651376146788991, 0.1651376146788991, 0.1743119266055046, 0.1834862385321101, 0.1926605504587156, 0.1926605504587156, 0.21100917431192662, 0.21100917431192662, 0.22018348623853212, 0.22935779816513763, 0.24770642201834864, 0.24770642201834864, 0.23853211009174313, 0.23853211009174313, 0.3211009174311927, 0.3211009174311927, 0.45871559633027525, 0.45871559633027525, 0.3669724770642202, 0.30275229357798167, 0.30275229357798167, 0.29357798165137616, 0.28440366972477066, 0.28440366972477066, 0.28440366972477066, 0.3119266055045872, 0.3394495412844037, 0.3486238532110092, 0.3577981651376147, 0.44954128440366975, 0.6422018348623854], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/RNA_lig_T4_1.gap.json b/pfam_gap_rates/RNA_lig_T4_1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..10ecc542780330fc4eb035098a709b0fda71c2a8
--- /dev/null
+++ b/pfam_gap_rates/RNA_lig_T4_1.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/RNA_pol_A_CTD.gap.json b/pfam_gap_rates/RNA_pol_A_CTD.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e7031492f24255533cf52644d16abbee6b585df2
--- /dev/null
+++ b/pfam_gap_rates/RNA_pol_A_CTD.gap.json
@@ -0,0 +1 @@
+{"family": "RNA_pol_A_CTD", "n_seqs": 2368, "length": 66, "gap_rates": [0.8023648648648649, 0.6756756756756757, 0.6009290540540541, 0.5223817567567568, 0.44003378378378377, 0.36951013513513514, 0.28800675675675674, 0.12837837837837837, 0.0789695945945946, 0.06418918918918919, 0.04560810810810811, 0.03547297297297297, 0.03125, 0.028716216216216218, 0.016469594594594593, 0.016047297297297296, 0.015202702702702704, 0.01393581081081081, 0.0046452702702702705, 0.0046452702702702705, 0.003800675675675676, 0.0033783783783783786, 0.0021114864864864866, 0.0021114864864864866, 0.0016891891891891893, 0.0016891891891891893, 0.001266891891891892, 0.001266891891891892, 0.001266891891891892, 0.001266891891891892, 0.0016891891891891893, 0.0016891891891891893, 0.001266891891891892, 0.0016891891891891893, 0.0008445945945945946, 0.0008445945945945946, 0.0008445945945945946, 0.0008445945945945946, 0.001266891891891892, 0.0016891891891891893, 0.002533783783783784, 0.001266891891891892, 0.0021114864864864866, 0.0016891891891891893, 0.001266891891891892, 0.0021114864864864866, 0.0016891891891891893, 0.0021114864864864866, 0.0033783783783783786, 0.0029560810810810812, 0.0029560810810810812, 0.0029560810810810812, 0.003800675675675676, 0.0046452702702702705, 0.005067567567567568, 0.005067567567567568, 0.005067567567567568, 0.006756756756756757, 0.008868243243243243, 0.009290540540540541, 0.010135135135135136, 0.014780405405405405, 0.030827702702702704, 0.052364864864864864, 0.13809121621621623, 0.7305743243243243], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/RNase_H_2.gap.json b/pfam_gap_rates/RNase_H_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..826f84affd9abaa3f350e28bee535078e643bb2b
--- /dev/null
+++ b/pfam_gap_rates/RNase_H_2.gap.json
@@ -0,0 +1 @@
+{"family": "RNase_H_2", "n_seqs": 823, "length": 203, "gap_rates": [0.44957472660996356, 0.23693803159173754, 0.18955042527339003, 0.18347509113001215, 0.18347509113001215, 0.1822600243013366, 0.1822600243013366, 0.1822600243013366, 0.3839611178614824, 0.33657351154313486, 0.9210206561360875, 0.9343863912515188, 0.9234507897934386, 0.9149453219927096, 0.33292831105710813, 0.212636695018226, 0.3086269744835966, 0.23572296476306198, 0.16646415552855406, 0.15674362089914945, 0.81044957472661, 0.1445929526123937, 0.1433778857837181, 0.13973268529769137, 0.1324422843256379, 0.13001215066828675, 0.1275820170109356, 0.12879708383961117, 0.17253948967193194, 0.2332928311057108, 0.16403402187120292, 0.14580801944106925, 0.8869987849331713, 0.13973268529769137, 0.1591737545565006, 0.1701093560145808, 0.17253948967193194, 0.5042527339003645, 0.945321992709599, 0.9222357229647631, 0.16646415552855406, 0.17496962332928312, 0.20170109356014582, 0.2454434993924666, 0.22114216281895505, 0.2065613608748481, 0.19319562575941676, 0.14945321992709598, 0.15066828675577157, 0.12636695018226002, 0.11543134872417983, 0.0959902794653706, 0.09720534629404617, 0.08262454434993925, 0.08140947752126367, 0.09963547995139732, 0.10935601458080195, 0.29647630619684084, 0.2660996354799514, 0.8019441069258809, 0.8930741190765492, 0.8153098420413123, 0.7825030376670717, 0.31470230862697446, 0.23572296476306198, 0.16403402187120292, 0.0692588092345079, 0.06561360874848117, 0.05953827460510328, 0.05710814094775213, 0.05953827460510328, 0.05224787363304982, 0.05103280680437424, 0.05224787363304982, 0.04981773997569866, 0.04981773997569866, 0.04981773997569866, 0.05710814094775213, 0.05103280680437424, 0.05103280680437424, 0.0899149453219927, 0.05103280680437424, 0.04981773997569866, 0.04981773997569866, 0.04981773997569866, 0.04981773997569866, 0.05103280680437424, 0.05224787363304982, 0.05224787363304982, 0.05224787363304982, 0.81044957472661, 0.8007290400972054, 0.24787363304981774, 0.0692588092345079, 0.12879708383961117, 0.08626974483596597, 0.07290400972053462, 0.08262454434993925, 0.20899149453219928, 0.5455650060753341, 0.7266099635479951, 0.8201701093560145, 0.8286755771567437, 0.7460510328068044, 0.6719319562575942, 0.4362089914945322, 0.34264884568651277, 0.1336573511543135, 0.05103280680437424, 0.010935601458080195, 0.00850546780072904, 0.006075334143377886, 0.006075334143377886, 0.006075334143377886, 0.006075334143377886, 0.004860267314702308, 0.006075334143377886, 0.004860267314702308, 0.8493317132442284, 0.8736330498177399, 0.827460510328068, 0.00850546780072904, 0.014580801944106925, 0.015795868772782502, 0.014580801944106925, 0.00850546780072904, 0.4993924665856622, 0.8772782503037667, 0.6087484811664642, 0.48724179829890646, 0.009720534629404616, 0.010935601458080195, 0.13973268529769137, 0.010935601458080195, 0.010935601458080195, 0.010935601458080195, 0.010935601458080195, 0.012150668286755772, 0.013365735115431349, 0.014580801944106925, 0.014580801944106925, 0.6865127582017011, 0.014580801944106925, 0.014580801944106925, 0.013365735115431349, 0.013365735115431349, 0.015795868772782502, 0.9465370595382746, 0.8857837181044957, 0.020656136087484813, 0.4094775212636695, 0.2065613608748481, 0.14823815309842042, 0.06561360874848117, 0.01701093560145808, 0.01701093560145808, 0.019441069258809233, 0.024301336573511544, 0.024301336573511544, 0.020656136087484813, 0.020656136087484813, 0.018226002430133656, 0.023086269744835967, 0.032806804374240585, 0.06804374240583232, 0.18469015795868773, 0.24787363304981774, 0.24179829890643986, 0.21020656136087484, 0.20413122721749696, 0.19562575941676794, 0.9477521263669502, 0.17253948967193194, 0.05710814094775213, 0.8942891859052248, 0.913730255164034, 0.9441069258809235, 0.93681652490887, 0.9088699878493317, 0.8930741190765492, 0.030376670716889428, 0.030376670716889428, 0.030376670716889428, 0.030376670716889428, 0.030376670716889428, 0.030376670716889428, 0.031591737545565005, 0.031591737545565005, 0.031591737545565005, 0.031591737545565005, 0.031591737545565005, 0.031591737545565005, 0.031591737545565005, 0.031591737545565005, 0.03402187120291616, 0.03402187120291616, 0.038882138517618466, 0.04374240583232078, 0.04860267314702309, 0.07776427703523693, 0.16889428918590524, 0.3244228432563791, 0.5091130012150669], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/ROK.gap.json b/pfam_gap_rates/ROK.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..7cedc63ffa4abaaf7fd61d8a7546cb5af0def46f
--- /dev/null
+++ b/pfam_gap_rates/ROK.gap.json
@@ -0,0 +1 @@
+{"family": "ROK", "n_seqs": 5000, "length": 336, "gap_rates": [0.8852, 0.3048, 0.2316, 0.2066, 0.1858, 0.1802, 0.1774, 0.1722, 0.1622, 0.1534, 0.1384, 0.1284, 0.1236, 0.1194, 0.116, 0.1152, 0.1126, 0.1466, 0.1156, 0.111, 0.1108, 0.1086, 0.108, 0.108, 0.108, 0.106, 0.1056, 0.1044, 0.6982, 0.823, 0.931, 0.7588, 0.6444, 0.2486, 0.2098, 0.1102, 0.1048, 0.1016, 0.0946, 0.0912, 0.0906, 0.085, 0.083, 0.0788, 0.2244, 0.0768, 0.0714, 0.0696, 0.0676, 0.0662, 0.065, 0.066, 0.065, 0.065, 0.0656, 0.1358, 0.1136, 0.2068, 0.167, 0.2096, 0.2068, 0.155, 0.1328, 0.9204, 0.0522, 0.0508, 0.0498, 0.0494, 0.0492, 0.0492, 0.0494, 0.0502, 0.0512, 0.0554, 0.9216, 0.9368, 0.9396, 0.9354, 0.913, 0.2758, 0.1258, 0.0576, 0.0564, 0.0532, 0.0548, 0.0564, 0.056, 0.0558, 0.0548, 0.0552, 0.054, 0.9112, 0.7714, 0.0536, 0.0518, 0.0524, 0.7636, 0.0486, 0.048, 0.0484, 0.048, 0.05, 0.0544, 0.0564, 0.0484, 0.0482, 0.0492, 0.0552, 0.0504, 0.0496, 0.9386, 0.0448, 0.043, 0.0414, 0.0398, 0.0396, 0.0394, 0.0394, 0.0392, 0.0392, 0.0392, 0.0394, 0.0392, 0.0458, 0.0432, 0.0426, 0.0436, 0.046, 0.0438, 0.045, 0.1406, 0.1018, 0.0724, 0.0576, 0.0508, 0.0492, 0.0492, 0.0458, 0.0474, 0.0462, 0.0422, 0.0412, 0.041, 0.041, 0.0426, 0.0428, 0.0426, 0.0432, 0.0432, 0.0438, 0.0434, 0.0434, 0.0456, 0.0454, 0.0476, 0.0484, 0.05, 0.0516, 0.054, 0.061, 0.0682, 0.1066, 0.1078, 0.1094, 0.1962, 0.18, 0.0896, 0.0822, 0.0754, 0.0774, 0.0966, 0.0992, 0.0998, 0.1022, 0.1044, 0.109, 0.8642, 0.9234, 0.9446, 0.886, 0.7884, 0.128, 0.1422, 0.2426, 0.2314, 0.2306, 0.232, 0.2252, 0.2266, 0.2012, 0.1904, 0.184, 0.1822, 0.9208, 0.1736, 0.164, 0.1636, 0.1604, 0.1588, 0.1608, 0.1602, 0.1614, 0.1586, 0.1596, 0.1608, 0.1612, 0.1618, 0.1618, 0.1656, 0.1698, 0.1782, 0.5244, 0.596, 0.6382, 0.6632, 0.6966, 0.7452, 0.7868, 0.868, 0.95, 0.9382, 0.8184, 0.768, 0.7158, 0.6784, 0.6546, 0.6226, 0.569, 0.4192, 0.1872, 0.1926, 0.1902, 0.1838, 0.1804, 0.1734, 0.1718, 0.1708, 0.1706, 0.2482, 0.2552, 0.2452, 0.2376, 0.2326, 0.2288, 0.228, 0.2556, 0.236, 0.2298, 0.226, 0.2224, 0.2098, 0.1614, 0.1514, 0.147, 0.1464, 0.1458, 0.1456, 0.1454, 0.1448, 0.1446, 0.1446, 0.1444, 0.1444, 0.1444, 0.1446, 0.1452, 0.1454, 0.1452, 0.1452, 0.1448, 0.145, 0.1444, 0.1446, 0.1462, 0.1508, 0.1548, 0.1476, 0.1472, 0.1474, 0.148, 0.1486, 0.1508, 0.1562, 0.1602, 0.1696, 0.1758, 0.1776, 0.1758, 0.177, 0.1772, 0.4716, 0.2152, 0.2108, 0.2006, 0.19, 0.1834, 0.1854, 0.1872, 0.191, 0.195, 0.2046, 0.2118, 0.2156, 0.2236, 0.221, 0.221, 0.2226, 0.2268, 0.2304, 0.2392, 0.7354, 0.926, 0.9494, 0.9038, 0.4244, 0.2386, 0.2296, 0.2282, 0.2262, 0.2274, 0.2278, 0.2298, 0.2314, 0.233, 0.2342, 0.232, 0.234, 0.2342, 0.2362, 0.2388, 0.2494, 0.2834, 0.3642, 0.4634, 0.61, 0.794], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/RPA_C.gap.json b/pfam_gap_rates/RPA_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..511e96de87017d6f05107221337e0c734e8bb63d
--- /dev/null
+++ b/pfam_gap_rates/RPA_C.gap.json
@@ -0,0 +1 @@
+{"family": "RPA_C", "n_seqs": 306, "length": 123, "gap_rates": [0.5620915032679739, 0.5522875816993464, 0.545751633986928, 0.5392156862745098, 0.5294117647058824, 0.5261437908496732, 0.5163398692810458, 0.5098039215686274, 0.5032679738562091, 0.5, 0.49673202614379086, 0.48366013071895425, 0.48366013071895425, 0.4738562091503268, 0.8921568627450981, 0.9411764705882353, 0.9281045751633987, 0.8366013071895425, 0.6764705882352942, 0.5686274509803921, 0.4934640522875817, 0.4542483660130719, 0.43137254901960786, 0.4019607843137255, 0.3562091503267974, 0.3333333333333333, 0.3137254901960784, 0.3006535947712418, 0.2973856209150327, 0.2581699346405229, 0.24183006535947713, 0.23202614379084968, 0.21241830065359477, 0.20261437908496732, 0.17647058823529413, 0.17647058823529413, 0.9248366013071896, 0.9411764705882353, 0.9052287581699346, 0.16339869281045752, 0.16339869281045752, 0.1437908496732026, 0.13071895424836602, 0.13398692810457516, 0.12745098039215685, 0.12745098039215685, 0.16666666666666666, 0.16666666666666666, 0.16339869281045752, 0.19281045751633988, 0.1437908496732026, 0.673202614379085, 0.8235294117647058, 0.9150326797385621, 0.9411764705882353, 0.8725490196078431, 0.7581699346405228, 0.5882352941176471, 0.434640522875817, 0.1830065359477124, 0.07516339869281045, 0.06862745098039216, 0.058823529411764705, 0.042483660130718956, 0.0196078431372549, 0.016339869281045753, 0.016339869281045753, 0.016339869281045753, 0.016339869281045753, 0.016339869281045753, 0.013071895424836602, 0.013071895424836602, 0.013071895424836602, 0.013071895424836602, 0.7875816993464052, 0.6666666666666666, 0.3006535947712418, 0.00980392156862745, 0.006535947712418301, 0.00980392156862745, 0.00980392156862745, 0.00980392156862745, 0.00980392156862745, 0.006535947712418301, 0.0032679738562091504, 0.0032679738562091504, 0.0032679738562091504, 0.0032679738562091504, 0.0032679738562091504, 0.0032679738562091504, 0.0032679738562091504, 0.0032679738562091504, 0.0, 0.7973856209150327, 0.9215686274509803, 0.5392156862745098, 0.006535947712418301, 0.0032679738562091504, 0.0, 0.0032679738562091504, 0.006535947712418301, 0.00980392156862745, 0.006535947712418301, 0.0032679738562091504, 0.00980392156862745, 0.00980392156862745, 0.00980392156862745, 0.00980392156862745, 0.00980392156862745, 0.00980392156862745, 0.00980392156862745, 0.013071895424836602, 0.013071895424836602, 0.013071895424836602, 0.013071895424836602, 0.016339869281045753, 0.016339869281045753, 0.016339869281045753, 0.029411764705882353, 0.029411764705882353, 0.06209150326797386, 0.0718954248366013, 0.40522875816993464], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/RPEL.gap.json b/pfam_gap_rates/RPEL.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c61012b8fbb9d14d2947b3322c60d1ac71497aa5
--- /dev/null
+++ b/pfam_gap_rates/RPEL.gap.json
@@ -0,0 +1 @@
+{"family": "RPEL", "n_seqs": 752, "length": 24, "gap_rates": [0.6090425531914894, 0.018617021276595744, 0.015957446808510637, 0.006648936170212766, 0.0026595744680851063, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0026595744680851063, 0.0026595744680851063, 0.005319148936170213, 0.08111702127659574, 0.25, 0.6409574468085106], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/RPN13_C.gap.json b/pfam_gap_rates/RPN13_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..8a8758fddc175145fa2545d641842ad04f8edbab
--- /dev/null
+++ b/pfam_gap_rates/RPN13_C.gap.json
@@ -0,0 +1 @@
+{"family": "RPN13_C", "n_seqs": 254, "length": 155, "gap_rates": [0.5826771653543307, 0.47244094488188976, 0.4251968503937008, 0.3858267716535433, 0.3700787401574803, 0.3464566929133858, 0.32677165354330706, 0.3031496062992126, 0.2874015748031496, 0.2559055118110236, 0.22440944881889763, 0.2047244094488189, 0.23228346456692914, 0.2795275590551181, 0.24803149606299213, 0.7795275590551181, 0.8976377952755905, 0.9488188976377953, 0.84251968503937, 0.6181102362204725, 0.06692913385826772, 0.051181102362204724, 0.047244094488188976, 0.04330708661417323, 0.03937007874015748, 0.03937007874015748, 0.03937007874015748, 0.03937007874015748, 0.03937007874015748, 0.03937007874015748, 0.03937007874015748, 0.03937007874015748, 0.03543307086614173, 0.03543307086614173, 0.03543307086614173, 0.031496062992125984, 0.031496062992125984, 0.031496062992125984, 0.031496062992125984, 0.8740157480314961, 0.6811023622047244, 0.031496062992125984, 0.031496062992125984, 0.03543307086614173, 0.03937007874015748, 0.9330708661417323, 0.14566929133858267, 0.09055118110236221, 0.023622047244094488, 0.01968503937007874, 0.01968503937007874, 0.01968503937007874, 0.01968503937007874, 0.01968503937007874, 0.015748031496062992, 0.01968503937007874, 0.01968503937007874, 0.48031496062992124, 0.7913385826771654, 0.8307086614173228, 0.8622047244094488, 0.8858267716535433, 0.9094488188976378, 0.9409448818897638, 0.9212598425196851, 0.8976377952755905, 0.8700787401574803, 0.84251968503937, 0.8188976377952756, 0.7519685039370079, 0.4409448818897638, 0.31496062992125984, 0.18503937007874016, 0.15354330708661418, 0.14566929133858267, 0.1377952755905512, 0.003937007874015748, 0.7834645669291339, 0.7913385826771654, 0.8346456692913385, 0.8385826771653543, 0.8464566929133859, 0.8543307086614174, 0.8700787401574803, 0.8818897637795275, 0.905511811023622, 0.9448818897637795, 0.9291338582677166, 0.8976377952755905, 0.8740157480314961, 0.8582677165354331, 0.8503937007874016, 0.84251968503937, 0.8385826771653543, 0.8267716535433071, 0.7874015748031497, 0.7795275590551181, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.003937007874015748, 0.003937007874015748, 0.003937007874015748, 0.015748031496062992, 0.023622047244094488, 0.023622047244094488, 0.027559055118110236, 0.027559055118110236, 0.027559055118110236, 0.027559055118110236, 0.027559055118110236, 0.031496062992125984, 0.031496062992125984, 0.031496062992125984, 0.03543307086614173, 0.031496062992125984, 0.03543307086614173, 0.19291338582677164, 0.18503937007874016, 0.03937007874015748, 0.03937007874015748, 0.03937007874015748, 0.03937007874015748, 0.03937007874015748, 0.03937007874015748, 0.047244094488188976, 0.051181102362204724, 0.05511811023622047, 0.06299212598425197, 0.9330708661417323, 0.5905511811023622, 0.5590551181102362, 0.5433070866141733, 0.5236220472440944, 0.39763779527559057, 0.24803149606299213, 0.2204724409448819, 0.22440944881889763, 0.2283464566929134, 0.23228346456692914, 0.23622047244094488, 0.25196850393700787, 0.25196850393700787, 0.2677165354330709, 0.2992125984251969, 0.3937007874015748, 0.4094488188976378], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/RRM_3.gap.json b/pfam_gap_rates/RRM_3.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..47a3df826c509cac05844423deef630a8fbc2450
--- /dev/null
+++ b/pfam_gap_rates/RRM_3.gap.json
@@ -0,0 +1 @@
+{"family": "RRM_3", "n_seqs": 251, "length": 122, "gap_rates": [0.3904382470119522, 0.35856573705179284, 0.3187250996015936, 0.3107569721115538, 0.30677290836653387, 0.2868525896414343, 0.2749003984063745, 0.38645418326693226, 0.8804780876494024, 0.26294820717131473, 0.22310756972111553, 0.1752988047808765, 0.1593625498007968, 0.09163346613545817, 0.08764940239043825, 0.8286852589641435, 0.07569721115537849, 0.07171314741035857, 0.06772908366533864, 0.05179282868525897, 0.05179282868525897, 0.05179282868525897, 0.05179282868525897, 0.04780876494023904, 0.04780876494023904, 0.05179282868525897, 0.04780876494023904, 0.035856573705179286, 0.8725099601593626, 0.9442231075697212, 0.900398406374502, 0.7768924302788844, 0.0199203187250996, 0.01593625498007968, 0.01593625498007968, 0.01593625498007968, 0.01195219123505976, 0.02390438247011952, 0.01593625498007968, 0.00796812749003984, 0.0199203187250996, 0.02390438247011952, 0.00796812749003984, 0.01195219123505976, 0.00796812749003984, 0.01195219123505976, 0.01195219123505976, 0.01195219123505976, 0.01195219123505976, 0.01593625498007968, 0.01593625498007968, 0.01593625498007968, 0.01195219123505976, 0.16334661354581673, 0.11155378486055777, 0.8685258964143426, 0.0199203187250996, 0.0199203187250996, 0.01593625498007968, 0.01593625498007968, 0.01195219123505976, 0.0199203187250996, 0.035856573705179286, 0.03187250996015936, 0.043824701195219126, 0.043824701195219126, 0.04780876494023904, 0.5378486055776892, 0.8247011952191236, 0.9362549800796812, 0.9362549800796812, 0.9402390438247012, 0.9402390438247012, 0.9402390438247012, 0.9362549800796812, 0.9243027888446215, 0.5737051792828686, 0.50199203187251, 0.2350597609561753, 0.20717131474103587, 0.20318725099601595, 0.12350597609561753, 0.11553784860557768, 0.10358565737051793, 0.09163346613545817, 0.07569721115537849, 0.05179282868525897, 0.0398406374501992, 0.043824701195219126, 0.043824701195219126, 0.043824701195219126, 0.05179282868525897, 0.04780876494023904, 0.043824701195219126, 0.055776892430278883, 0.06374501992031872, 0.06772908366533864, 0.07171314741035857, 0.07569721115537849, 0.08366533864541832, 0.10756972111553785, 0.11553784860557768, 0.12749003984063745, 0.1394422310756972, 0.14342629482071714, 0.14741035856573706, 0.15139442231075698, 0.19123505976095617, 0.1952191235059761, 0.20717131474103587, 0.21115537848605578, 0.22709163346613545, 0.9442231075697212, 0.900398406374502, 0.2549800796812749, 0.2589641434262948, 0.29880478087649404, 0.33067729083665337, 0.38645418326693226, 0.4860557768924303, 0.549800796812749, 0.6852589641434262], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Rad1.gap.json b/pfam_gap_rates/Rad1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..448e1af30c5265172e78727da0dff2dc868cb2f7
--- /dev/null
+++ b/pfam_gap_rates/Rad1.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Rad50_zn_hook.gap.json b/pfam_gap_rates/Rad50_zn_hook.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..0cb6f7baa7396e270d68c695330d5c221129d4c1
--- /dev/null
+++ b/pfam_gap_rates/Rad50_zn_hook.gap.json
@@ -0,0 +1 @@
+{"family": "Rad50_zn_hook", "n_seqs": 172, "length": 54, "gap_rates": [0.8255813953488372, 0.622093023255814, 0.5232558139534884, 0.4186046511627907, 0.37790697674418605, 0.3081395348837209, 0.20930232558139536, 0.13372093023255813, 0.12209302325581395, 0.11046511627906977, 0.10465116279069768, 0.09883720930232558, 0.06395348837209303, 0.01744186046511628, 0.011627906976744186, 0.011627906976744186, 0.023255813953488372, 0.011627906976744186, 0.011627906976744186, 0.19186046511627908, 0.7383720930232558, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.6627906976744186, 0.0, 0.0, 0.005813953488372093, 0.005813953488372093, 0.011627906976744186, 0.01744186046511628, 0.01744186046511628, 0.023255813953488372, 0.023255813953488372, 0.040697674418604654, 0.046511627906976744, 0.09883720930232558, 0.14534883720930233, 0.16279069767441862, 0.20930232558139536, 0.28488372093023256, 0.3372093023255814, 0.45348837209302323, 0.7093023255813954], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Radical_SAM_N.gap.json b/pfam_gap_rates/Radical_SAM_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d072852220c3150af2d58fbc9af00cb6deca58ef
--- /dev/null
+++ b/pfam_gap_rates/Radical_SAM_N.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/RasGAP.gap.json b/pfam_gap_rates/RasGAP.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..71c0efa0bd624286d935e731ca5ac62800b18bca
--- /dev/null
+++ b/pfam_gap_rates/RasGAP.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/RasGEF_N_2.gap.json b/pfam_gap_rates/RasGEF_N_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..1f1e44f5fe51f8211f58efb5af20f268697dcca4
--- /dev/null
+++ b/pfam_gap_rates/RasGEF_N_2.gap.json
@@ -0,0 +1 @@
+{"family": "RasGEF_N_2", "n_seqs": 247, "length": 122, "gap_rates": [0.8704453441295547, 0.5384615384615384, 0.242914979757085, 0.07692307692307693, 0.06477732793522267, 0.06882591093117409, 0.06072874493927125, 0.06072874493927125, 0.05668016194331984, 0.048582995951417005, 0.06477732793522267, 0.048582995951417005, 0.03643724696356275, 0.03643724696356275, 0.9433198380566802, 0.06882591093117409, 0.044534412955465584, 0.04048582995951417, 0.032388663967611336, 0.03643724696356275, 0.032388663967611336, 0.02834008097165992, 0.02834008097165992, 0.02834008097165992, 0.024291497975708502, 0.024291497975708502, 0.024291497975708502, 0.020242914979757085, 0.020242914979757085, 0.020242914979757085, 0.024291497975708502, 0.024291497975708502, 0.020242914979757085, 0.020242914979757085, 0.020242914979757085, 0.020242914979757085, 0.04048582995951417, 0.8380566801619433, 0.03643724696356275, 0.02834008097165992, 0.02834008097165992, 0.02834008097165992, 0.024291497975708502, 0.024291497975708502, 0.024291497975708502, 0.02834008097165992, 0.07692307692307693, 0.05668016194331984, 0.032388663967611336, 0.9433198380566802, 0.02834008097165992, 0.02834008097165992, 0.902834008097166, 0.9109311740890689, 0.9109311740890689, 0.9352226720647774, 0.9473684210526315, 0.9109311740890689, 0.9109311740890689, 0.902834008097166, 0.8987854251012146, 0.020242914979757085, 0.03643724696356275, 0.03643724696356275, 0.9109311740890689, 0.05668016194331984, 0.03643724696356275, 0.9190283400809717, 0.02834008097165992, 0.024291497975708502, 0.024291497975708502, 0.020242914979757085, 0.020242914979757085, 0.016194331983805668, 0.020242914979757085, 0.016194331983805668, 0.016194331983805668, 0.024291497975708502, 0.020242914979757085, 0.020242914979757085, 0.020242914979757085, 0.020242914979757085, 0.024291497975708502, 0.03643724696356275, 0.03643724696356275, 0.0931174089068826, 0.08502024291497975, 0.05668016194331984, 0.048582995951417005, 0.044534412955465584, 0.06072874493927125, 0.9271255060728745, 0.044534412955465584, 0.044534412955465584, 0.02834008097165992, 0.02834008097165992, 0.02834008097165992, 0.02834008097165992, 0.032388663967611336, 0.032388663967611336, 0.032388663967611336, 0.032388663967611336, 0.032388663967611336, 0.04048582995951417, 0.044534412955465584, 0.04048582995951417, 0.04048582995951417, 0.044534412955465584, 0.048582995951417005, 0.05263157894736842, 0.05668016194331984, 0.05668016194331984, 0.05668016194331984, 0.05668016194331984, 0.05668016194331984, 0.06882591093117409, 0.08906882591093117, 0.11740890688259109, 0.13360323886639677, 0.15384615384615385, 0.242914979757085, 0.5668016194331984], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Rax2.gap.json b/pfam_gap_rates/Rax2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..6c215f200f490cf9337b4b4ca10018002a232fd2
--- /dev/null
+++ b/pfam_gap_rates/Rax2.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Redoxin.gap.json b/pfam_gap_rates/Redoxin.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..3ca21531ded4398e60b978e6db7fba80983a0c76
--- /dev/null
+++ b/pfam_gap_rates/Redoxin.gap.json
@@ -0,0 +1 @@
+{"family": "Redoxin", "n_seqs": 3166, "length": 178, "gap_rates": [0.7924826279216677, 0.49494630448515475, 0.361339229311434, 0.30953885028427036, 0.26942514213518637, 0.24131396083385975, 0.2286797220467467, 0.21509791535060013, 0.2065698041692988, 0.19709412507896398, 0.8632343651295009, 0.9077700568540745, 0.9185091598231206, 0.934301958307012, 0.9254579911560329, 0.9125078963992419, 0.8774478837650032, 0.8139608338597599, 0.19393556538218573, 0.4314592545799116, 0.3802905874921036, 0.4491471888818699, 0.32659507264687304, 0.11402400505369552, 0.10486418193303854, 0.09633607075173721, 0.08559696778269109, 0.07485786481364498, 0.06632975363234365, 0.056854074542008845, 0.04990524320909665, 0.04674668351231838, 0.0410612760581175, 0.9222994314592545, 0.6039166140240051, 0.049273531269740996, 0.033480732785849655, 0.024636765634870498, 0.022109917877447885, 0.01958307012002527, 0.06632975363234365, 0.016740366392924828, 0.016424510423247, 0.015161086544535692, 0.014845230574857865, 0.014529374605180037, 0.014213518635502211, 0.013581806696146557, 0.4248262792166772, 0.017687934301958308, 0.015161086544535692, 0.015161086544535692, 0.013897662665824383, 0.012002526847757423, 0.012318382817435249, 0.012318382817435249, 0.013265950726468731, 0.012634238787113077, 0.21825647504737838, 0.7596336070751737, 0.6471888818698673, 0.21825647504737838, 0.21794061907770057, 0.013265950726468731, 0.012950094756790903, 0.011686670878079595, 0.050852811118130135, 0.053379658875552745, 0.05780164245104232, 0.44314592545799114, 0.1399241945672773, 0.1020214782059381, 0.05716993051168667, 0.033480732785849655, 0.011370814908401769, 0.010423246999368288, 0.009791535060012634, 0.03095388502842704, 0.013265950726468731, 0.011370814908401769, 0.012002526847757423, 0.014213518635502211, 0.012950094756790903, 0.013265950726468731, 0.014213518635502211, 0.015161086544535692, 0.011370814908401769, 0.7785849652558433, 0.9390397978521794, 0.9472520530638029, 0.9030322173089071, 0.4469361970941251, 0.010739102969046115, 0.012634238787113077, 0.013265950726468731, 0.013265950726468731, 0.013581806696146557, 0.013897662665824383, 0.010423246999368288, 0.6231838281743525, 0.8695514845230575, 0.934301958307012, 0.7312065698041693, 0.5716993051168667, 0.010423246999368288, 0.01831964624131396, 0.035691724573594444, 0.017687934301958308, 0.014529374605180037, 0.013897662665824383, 0.014213518635502211, 0.7334175615919141, 0.014529374605180037, 0.013265950726468731, 0.014845230574857865, 0.9099810486418193, 0.7811118130132659, 0.014845230574857865, 0.045483259633607075, 0.027479469361970942, 0.018635502210991788, 0.01737207833228048, 0.01737207833228048, 0.017687934301958308, 0.017056222362602652, 0.017687934301958308, 0.018003790271636132, 0.1689829437776374, 0.16140240050536955, 0.43367024636765633, 0.4339861023373342, 0.441566645609602, 0.44756790903348076, 0.542008843967151, 0.5312697409981049, 0.4974731522425774, 0.41092861655085283, 0.7618445988629186, 0.7981680353758686, 0.680669614655717, 0.4134554643082754, 0.022741629816803537, 0.022109917877447885, 0.022109917877447885, 0.023057485786481365, 0.02337334175615919, 0.023689197725837018, 0.02337334175615919, 0.024320909665192673, 0.025900189513581806, 0.025900189513581806, 0.027163613392293114, 0.028427037271004423, 0.03095388502842704, 0.035691724573594444, 0.037271004421983576, 0.0445356917245736, 0.049273531269740996, 0.05464308275426406, 0.06001263423878711, 0.06885660138976626, 0.08528111181301326, 0.1162349968414403, 0.14497789008212256, 0.4472520530638029, 0.4330385344283007, 0.9428300694883134, 0.9109286165508528, 0.6797220467466835, 0.6250789639924195, 0.4248262792166772, 0.4327226784586229, 0.44756790903348076, 0.4706253948199621, 0.4943145925457991, 0.5230574857864814, 0.5559065066329754, 0.618761844598863], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/ResB.gap.json b/pfam_gap_rates/ResB.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..0a75bb04f32e4b2e0d462260e12844dcaef3b8bd
--- /dev/null
+++ b/pfam_gap_rates/ResB.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Rgp1.gap.json b/pfam_gap_rates/Rgp1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..6f45518a44052cc4d8dec2e660743d4f7827bd5c
--- /dev/null
+++ b/pfam_gap_rates/Rgp1.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Ribosomal_L10.gap.json b/pfam_gap_rates/Ribosomal_L10.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..0308900fe09bf3986556f871fc482b44d1e9e9e7
--- /dev/null
+++ b/pfam_gap_rates/Ribosomal_L10.gap.json
@@ -0,0 +1 @@
+{"family": "Ribosomal_L10", "n_seqs": 3092, "length": 107, "gap_rates": [0.795601552393273, 0.536222509702458, 0.3321474773609314, 0.1057567917205692, 0.06532988357050452, 0.056597671410090554, 0.05271668822768435, 0.05109961190168176, 0.04301423027166882, 0.03978007761966365, 0.031047865459249677, 0.029754204398447608, 0.02813712807244502, 0.02554980595084088, 0.02457956015523933, 0.02328589909443726, 0.02166882276843467, 0.019728331177231564, 0.018434670116429495, 0.01778783958602846, 0.019404915912031046, 0.017464424320827943, 0.016170763260025874, 0.015523932729624839, 0.01520051746442432, 0.014877102199223804, 0.014877102199223804, 0.014230271668822769, 0.01390685640362225, 0.013260025873221216, 0.01164294954721863, 0.01164294954721863, 0.011319534282018111, 0.010672703751617076, 0.01034928848641656, 0.007438551099611902, 0.0071151358344113845, 0.0071151358344113845, 0.00646830530401035, 0.00646830530401035, 0.00646830530401035, 0.006144890038809832, 0.006144890038809832, 0.00517464424320828, 0.00517464424320828, 0.06274256144890039, 0.3447606727037516, 0.010025873221216041, 0.005821474773609315, 0.004204398447606727, 0.0029107373868046574, 0.002263906856403622, 0.0019404915912031048, 0.0019404915912031048, 0.0019404915912031048, 0.002263906856403622, 0.00258732212160414, 0.0029107373868046574, 0.0029107373868046574, 0.0035575679172056922, 0.0038809831824062097, 0.004204398447606727, 0.004204398447606727, 0.004527813712807244, 0.004527813712807244, 0.004527813712807244, 0.004527813712807244, 0.008085381630012937, 0.6216041397153945, 0.8476714100905562, 0.06921086675291074, 0.7415912031047865, 0.794954721862872, 0.9204398447606728, 0.8576972833117723, 0.7574385510996119, 0.7257438551099612, 0.031047865459249677, 0.011966364812419146, 0.010672703751617076, 0.01034928848641656, 0.008408796895213453, 0.009055627425614488, 0.008408796895213453, 0.009055627425614488, 0.009702457956015523, 0.009702457956015523, 0.009702457956015523, 0.010025873221216041, 0.010672703751617076, 0.010996119016817595, 0.16979301423027165, 0.015847347994825355, 0.01908150064683053, 0.021345407503234153, 0.023932729624838292, 0.0481888745148771, 0.03072445019404916, 0.033958602846054335, 0.03686934023285899, 0.03978007761966365, 0.04430789133247089, 0.06597671410090557, 0.08764553686934023, 0.148124191461837, 0.42626131953428203, 0.5258732212160414], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Ribosomal_L22e.gap.json b/pfam_gap_rates/Ribosomal_L22e.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..cf7913b3e835b36c19d5a3c7ea8ea086364b3372
--- /dev/null
+++ b/pfam_gap_rates/Ribosomal_L22e.gap.json
@@ -0,0 +1 @@
+{"family": "Ribosomal_L22e", "n_seqs": 441, "length": 113, "gap_rates": [0.6167800453514739, 0.3424036281179138, 0.14058956916099774, 0.09523809523809523, 0.07482993197278912, 0.07256235827664399, 0.07029478458049887, 0.07029478458049887, 0.07029478458049887, 0.07029478458049887, 0.07029478458049887, 0.07029478458049887, 0.07029478458049887, 0.07709750566893424, 0.07709750566893424, 0.07029478458049887, 0.06802721088435375, 0.06802721088435375, 0.05668934240362812, 0.05442176870748299, 0.05215419501133787, 0.05215419501133787, 0.049886621315192746, 0.049886621315192746, 0.04308390022675737, 0.04308390022675737, 0.04308390022675737, 0.04308390022675737, 0.04308390022675737, 0.04308390022675737, 0.04308390022675737, 0.04308390022675737, 0.04308390022675737, 0.04308390022675737, 0.9342403628117913, 0.047619047619047616, 0.047619047619047616, 0.045351473922902494, 0.045351473922902494, 0.045351473922902494, 0.045351473922902494, 0.045351473922902494, 0.05668934240362812, 0.05668934240362812, 0.05215419501133787, 0.9002267573696145, 0.04081632653061224, 0.04308390022675737, 0.04308390022675737, 0.04308390022675737, 0.04081632653061224, 0.04081632653061224, 0.6961451247165533, 0.05215419501133787, 0.049886621315192746, 0.036281179138321996, 0.031746031746031744, 0.031746031746031744, 0.02947845804988662, 0.02947845804988662, 0.031746031746031744, 0.031746031746031744, 0.02947845804988662, 0.034013605442176874, 0.02947845804988662, 0.027210884353741496, 0.027210884353741496, 0.022675736961451247, 0.031746031746031744, 0.036281179138321996, 0.04081632653061224, 0.04081632653061224, 0.04308390022675737, 0.04081632653061224, 0.04308390022675737, 0.047619047619047616, 0.047619047619047616, 0.049886621315192746, 0.05215419501133787, 0.05215419501133787, 0.05215419501133787, 0.049886621315192746, 0.049886621315192746, 0.049886621315192746, 0.05215419501133787, 0.05215419501133787, 0.05215419501133787, 0.05215419501133787, 0.05215419501133787, 0.05215419501133787, 0.05215419501133787, 0.05215419501133787, 0.05215419501133787, 0.05215419501133787, 0.8208616780045351, 0.8163265306122449, 0.05442176870748299, 0.05442176870748299, 0.05442176870748299, 0.05442176870748299, 0.05442176870748299, 0.05668934240362812, 0.061224489795918366, 0.061224489795918366, 0.061224489795918366, 0.061224489795918366, 0.06349206349206349, 0.07029478458049887, 0.08163265306122448, 0.10657596371882086, 0.1360544217687075, 0.23582766439909297, 0.4013605442176871], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Ribosomal_L24e.gap.json b/pfam_gap_rates/Ribosomal_L24e.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..0ff7c0d4539a1ce147e8450df4cd0d3d8a12255a
--- /dev/null
+++ b/pfam_gap_rates/Ribosomal_L24e.gap.json
@@ -0,0 +1 @@
+{"family": "Ribosomal_L24e", "n_seqs": 840, "length": 66, "gap_rates": [0.29404761904761906, 0.1619047619047619, 0.13214285714285715, 0.1, 0.09404761904761905, 0.09404761904761905, 0.09166666666666666, 0.09047619047619047, 0.09047619047619047, 0.0880952380952381, 0.08452380952380953, 0.08214285714285714, 0.08214285714285714, 0.08214285714285714, 0.07857142857142857, 0.07738095238095238, 0.07261904761904762, 0.07142857142857142, 0.06785714285714285, 0.06547619047619048, 0.0630952380952381, 0.06785714285714285, 0.06785714285714285, 0.06666666666666667, 0.06547619047619048, 0.06428571428571428, 0.04880952380952381, 0.04523809523809524, 0.04880952380952381, 0.04880952380952381, 0.04880952380952381, 0.04880952380952381, 0.05, 0.05, 0.04880952380952381, 0.04880952380952381, 0.05, 0.04642857142857143, 0.04285714285714286, 0.04285714285714286, 0.04285714285714286, 0.01904761904761905, 0.017857142857142856, 0.017857142857142856, 0.017857142857142856, 0.01904761904761905, 0.01904761904761905, 0.01904761904761905, 0.02023809523809524, 0.02023809523809524, 0.02142857142857143, 0.02023809523809524, 0.02023809523809524, 0.03333333333333333, 0.04047619047619048, 0.05119047619047619, 0.05357142857142857, 0.0630952380952381, 0.06785714285714285, 0.07142857142857142, 0.07976190476190476, 0.0880952380952381, 0.10238095238095238, 0.1630952380952381, 0.36547619047619045, 0.763095238095238], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Ribosomal_L25p.gap.json b/pfam_gap_rates/Ribosomal_L25p.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..925652713e0d8754cfb2b73a8fc4f129acfd559d
--- /dev/null
+++ b/pfam_gap_rates/Ribosomal_L25p.gap.json
@@ -0,0 +1 @@
+{"family": "Ribosomal_L25p", "n_seqs": 1816, "length": 95, "gap_rates": [0.33590308370044053, 0.1883259911894273, 0.08590308370044053, 0.04790748898678414, 0.036894273127753306, 0.031938325991189426, 0.036894273127753306, 0.13986784140969163, 0.19823788546255505, 0.04515418502202643, 0.05011013215859031, 0.06883259911894272, 0.022026431718061675, 0.021475770925110133, 0.022026431718061675, 0.020374449339207047, 0.01762114537444934, 0.01817180616740088, 0.016519823788546256, 0.015418502202643172, 0.01486784140969163, 0.012665198237885462, 0.012665198237885462, 0.009911894273127754, 0.009911894273127754, 0.009911894273127754, 0.006057268722466961, 0.006057268722466961, 0.006057268722466961, 0.006607929515418502, 0.05066079295154185, 0.045704845814977975, 0.01762114537444934, 0.9493392070484582, 0.8678414096916299, 0.005506607929515419, 0.004955947136563877, 0.003854625550660793, 0.003303964757709251, 0.003303964757709251, 0.003303964757709251, 0.003854625550660793, 0.003303964757709251, 0.003303964757709251, 0.0027533039647577094, 0.0027533039647577094, 0.0027533039647577094, 0.0027533039647577094, 0.0027533039647577094, 0.0022026431718061676, 0.015969162995594713, 0.0027533039647577094, 0.0974669603524229, 0.5870044052863436, 0.22687224669603523, 0.007709251101321586, 0.0022026431718061676, 0.0027533039647577094, 0.0016519823788546256, 0.0016519823788546256, 0.0022026431718061676, 0.0016519823788546256, 0.003854625550660793, 0.004405286343612335, 0.004955947136563877, 0.9102422907488987, 0.9344713656387665, 0.8452643171806168, 0.003854625550660793, 0.07599118942731277, 0.913546255506608, 0.7714757709251101, 0.037444933920704845, 0.02918502202643172, 0.004405286343612335, 0.004405286343612335, 0.004955947136563877, 0.004955947136563877, 0.004955947136563877, 0.004955947136563877, 0.004955947136563877, 0.005506607929515419, 0.006057268722466961, 0.005506607929515419, 0.009361233480176211, 0.010462555066079295, 0.007709251101321586, 0.011013215859030838, 0.007709251101321586, 0.008259911894273128, 0.009361233480176211, 0.009911894273127754, 0.011563876651982379, 0.016519823788546256, 0.02918502202643172], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Ribosomal_L29.gap.json b/pfam_gap_rates/Ribosomal_L29.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..04f3d187f5af39fd5485bb8b3a9b795af826e16a
--- /dev/null
+++ b/pfam_gap_rates/Ribosomal_L29.gap.json
@@ -0,0 +1 @@
+{"family": "Ribosomal_L29", "n_seqs": 2726, "length": 58, "gap_rates": [0.49229640498899485, 0.10344827586206896, 0.052457813646368305, 0.03888481291269259, 0.028980190755685985, 0.022010271460014674, 0.020542920029347028, 0.016874541452677916, 0.01577402787967718, 0.015407190022010272, 0.013939838591342627, 0.013206162876008804, 0.011005135730007337, 0.009537784299339692, 0.009537784299339692, 0.008070432868672046, 0.007336757153338224, 0.007336757153338224, 0.007336757153338224, 0.007336757153338224, 0.006969919295671314, 0.006969919295671314, 0.0062362435803374906, 0.0062362435803374906, 0.00586940572267058, 0.004402054292002935, 0.004035216434336023, 0.003301540719002201, 0.003301540719002201, 0.001834189288334556, 0.0007336757153338225, 0.0011005135730007337, 0.8371239911958914, 0.01173881144534116, 0.011371973587674248, 0.014673514306676448, 0.0022010271460014674, 0.001467351430667645, 0.001467351430667645, 0.001834189288334556, 0.001834189288334556, 0.00293470286133529, 0.004035216434336023, 0.004402054292002935, 0.004402054292002935, 0.004402054292002935, 0.004402054292002935, 0.00586940572267058, 0.006603081438004402, 0.006603081438004402, 0.006969919295671314, 0.006969919295671314, 0.008070432868672046, 0.010638297872340425, 0.013206162876008804, 0.025678650036683785, 0.11151870873074102, 0.33822450476889215], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Ribosomal_L3.gap.json b/pfam_gap_rates/Ribosomal_L3.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..49a44e1bc26fb86c0cb83ffd5b4446dfad9910e3
--- /dev/null
+++ b/pfam_gap_rates/Ribosomal_L3.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Ribosomal_L38e.gap.json b/pfam_gap_rates/Ribosomal_L38e.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..eb06a7572b67fc29711d522301d2d6d159411bf2
--- /dev/null
+++ b/pfam_gap_rates/Ribosomal_L38e.gap.json
@@ -0,0 +1 @@
+{"family": "Ribosomal_L38e", "n_seqs": 387, "length": 77, "gap_rates": [0.09302325581395349, 0.06459948320413436, 0.05426356589147287, 0.04392764857881137, 0.04392764857881137, 0.04392764857881137, 0.04392764857881137, 0.04392764857881137, 0.041343669250646, 0.041343669250646, 0.03875968992248062, 0.03875968992248062, 0.03617571059431524, 0.03617571059431524, 0.03875968992248062, 0.04392764857881137, 0.046511627906976744, 0.03875968992248062, 0.028423772609819122, 0.01808785529715762, 0.012919896640826873, 0.0103359173126615, 0.0103359173126615, 0.0103359173126615, 0.0103359173126615, 0.012919896640826873, 0.0103359173126615, 0.0103359173126615, 0.627906976744186, 0.7984496124031008, 0.8423772609819121, 0.9147286821705426, 0.917312661498708, 0.8449612403100775, 0.8165374677002584, 0.7881136950904393, 0.5839793281653747, 0.0103359173126615, 0.0103359173126615, 0.007751937984496124, 0.007751937984496124, 0.007751937984496124, 0.007751937984496124, 0.0103359173126615, 0.0103359173126615, 0.0103359173126615, 0.0103359173126615, 0.012919896640826873, 0.012919896640826873, 0.012919896640826873, 0.012919896640826873, 0.012919896640826873, 0.012919896640826873, 0.012919896640826873, 0.015503875968992248, 0.031007751937984496, 0.03617571059431524, 0.023255813953488372, 0.023255813953488372, 0.025839793281653745, 0.028423772609819122, 0.031007751937984496, 0.028423772609819122, 0.03359173126614987, 0.031007751937984496, 0.03359173126614987, 0.03875968992248062, 0.03875968992248062, 0.04392764857881137, 0.05426356589147287, 0.06459948320413436, 0.09819121447028424, 0.11627906976744186, 0.12919896640826872, 0.1524547803617571, 0.19896640826873385, 0.4780361757105943], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Ribosomal_S14.gap.json b/pfam_gap_rates/Ribosomal_S14.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..9f55ecbad0b287d74da06e80414e6628115a1ba3
--- /dev/null
+++ b/pfam_gap_rates/Ribosomal_S14.gap.json
@@ -0,0 +1 @@
+{"family": "Ribosomal_S14", "n_seqs": 2712, "length": 56, "gap_rates": [0.5822271386430679, 0.17957227138643067, 0.12426253687315635, 0.0715339233038348, 0.05309734513274336, 0.04387905604719764, 0.03355457227138643, 0.0306047197640118, 0.02396755162241888, 0.48525073746312686, 0.47050147492625366, 0.011799410029498525, 0.009587020648967551, 0.007743362831858407, 0.007005899705014749, 0.00663716814159292, 0.0055309734513274336, 0.0058997050147492625, 0.00331858407079646, 0.0025811209439528023, 0.0025811209439528023, 0.0022123893805309734, 0.0022123893805309734, 0.0022123893805309734, 0.0018436578171091445, 0.0014749262536873156, 0.0011061946902654867, 0.0011061946902654867, 0.0011061946902654867, 0.0014749262536873156, 0.0014749262536873156, 0.0011061946902654867, 0.0007374631268436578, 0.8624631268436578, 0.8624631268436578, 0.0007374631268436578, 0.0007374631268436578, 0.0011061946902654867, 0.0025811209439528023, 0.003687315634218289, 0.004793510324483776, 0.0058997050147492625, 0.00663716814159292, 0.006268436578171091, 0.006268436578171091, 0.007374631268436578, 0.1441740412979351, 0.14564896755162243, 0.14638643067846607, 0.009587020648967551, 0.00995575221238938, 0.00995575221238938, 0.011799410029498525, 0.014749262536873156, 0.08517699115044247, 0.1390117994100295], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Ribosomal_S27e.gap.json b/pfam_gap_rates/Ribosomal_S27e.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..43aab2d5f8d223ad0b714c51cde05a4c819396f4
--- /dev/null
+++ b/pfam_gap_rates/Ribosomal_S27e.gap.json
@@ -0,0 +1 @@
+{"family": "Ribosomal_S27e", "n_seqs": 473, "length": 55, "gap_rates": [0.1416490486257928, 0.07399577167019028, 0.0613107822410148, 0.048625792811839326, 0.048625792811839326, 0.021141649048625793, 0.019027484143763214, 0.016913319238900635, 0.016913319238900635, 0.014799154334038054, 0.014799154334038054, 0.010570824524312896, 0.008456659619450317, 0.008456659619450317, 0.008456659619450317, 0.006342494714587738, 0.006342494714587738, 0.006342494714587738, 0.006342494714587738, 0.010570824524312896, 0.012684989429175475, 0.012684989429175475, 0.010570824524312896, 0.012684989429175475, 0.014799154334038054, 0.016913319238900635, 0.019027484143763214, 0.021141649048625793, 0.023255813953488372, 0.02959830866807611, 0.035940803382663845, 0.035940803382663845, 0.03382663847780127, 0.03382663847780127, 0.03382663847780127, 0.03382663847780127, 0.03382663847780127, 0.03382663847780127, 0.03382663847780127, 0.035940803382663845, 0.035940803382663845, 0.035940803382663845, 0.03805496828752643, 0.03805496828752643, 0.042283298097251586, 0.046511627906976744, 0.0507399577167019, 0.05919661733615222, 0.07399577167019028, 0.09090909090909091, 0.11205073995771671, 0.13953488372093023, 0.1543340380549683, 0.20507399577167018, 0.3023255813953488], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Ribosomal_S30AE.gap.json b/pfam_gap_rates/Ribosomal_S30AE.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..533074868baebbbec016ff37f93b4f285b411ed5
--- /dev/null
+++ b/pfam_gap_rates/Ribosomal_S30AE.gap.json
@@ -0,0 +1 @@
+{"family": "Ribosomal_S30AE", "n_seqs": 2425, "length": 110, "gap_rates": [0.42515463917525775, 0.13072164948453607, 0.08206185567010309, 0.06309278350515464, 0.04989690721649485, 0.044123711340206186, 0.04, 0.033814432989690724, 0.0288659793814433, 0.024742268041237112, 0.0222680412371134, 0.018969072164948454, 0.016907216494845362, 0.015670103092783504, 0.014020618556701031, 0.0111340206185567, 0.010721649484536083, 0.009072164948453608, 0.007422680412371134, 0.006597938144329897, 0.006597938144329897, 0.006597938144329897, 0.8931958762886598, 0.006597938144329897, 0.006597938144329897, 0.006597938144329897, 0.006185567010309278, 0.9216494845360824, 0.006185567010309278, 0.008247422680412371, 0.8210309278350515, 0.8309278350515464, 0.8144329896907216, 0.016907216494845362, 0.19917525773195877, 0.7690721649484537, 0.8288659793814434, 0.2177319587628866, 0.18597938144329898, 0.006597938144329897, 0.008247422680412371, 0.007422680412371134, 0.006597938144329897, 0.006597938144329897, 0.007422680412371134, 0.007835051546391752, 0.006185567010309278, 0.31628865979381443, 0.5389690721649485, 0.8379381443298969, 0.9369072164948453, 0.8948453608247423, 0.6701030927835051, 0.4065979381443299, 0.09360824742268041, 0.06927835051546392, 0.088659793814433, 0.3154639175257732, 0.7265979381443299, 0.8977319587628866, 0.6041237113402061, 0.15628865979381443, 0.017731958762886597, 0.004948453608247422, 0.004948453608247422, 0.004123711340206186, 0.004123711340206186, 0.004123711340206186, 0.004123711340206186, 0.3839175257731959, 0.1088659793814433, 0.05979381443298969, 0.9167010309278351, 0.2177319587628866, 0.0032989690721649486, 0.003711340206185567, 0.004536082474226804, 0.006185567010309278, 0.003711340206185567, 0.016907216494845362, 0.012371134020618556, 0.010721649484536083, 0.006185567010309278, 0.0053608247422680414, 0.004123711340206186, 0.004536082474226804, 0.004536082474226804, 0.004536082474226804, 0.004536082474226804, 0.004536082474226804, 0.004536082474226804, 0.004536082474226804, 0.004536082474226804, 0.004948453608247422, 0.004948453608247422, 0.0053608247422680414, 0.006185567010309278, 0.006185567010309278, 0.006185567010309278, 0.0070103092783505155, 0.008247422680412371, 0.00865979381443299, 0.012371134020618556, 0.016494845360824743, 0.021443298969072166, 0.03134020618556701, 0.04907216494845361, 0.07835051546391752, 0.19010309278350515, 0.7525773195876289], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Ribosomal_S7e.gap.json b/pfam_gap_rates/Ribosomal_S7e.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..02410e94c55e29280882016a9974f19545829502
--- /dev/null
+++ b/pfam_gap_rates/Ribosomal_S7e.gap.json
@@ -0,0 +1 @@
+{"family": "Ribosomal_S7e", "n_seqs": 439, "length": 189, "gap_rates": [0.5284738041002278, 0.4874715261958998, 0.4191343963553531, 0.2164009111617312, 0.18906605922551253, 0.1548974943052392, 0.13211845102505695, 0.11845102505694761, 0.11845102505694761, 0.11617312072892938, 0.10933940774487472, 0.10933940774487472, 0.10933940774487472, 0.10933940774487472, 0.10933940774487472, 0.11161731207289294, 0.10933940774487472, 0.1070615034168565, 0.10250569476082004, 0.10250569476082004, 0.10250569476082004, 0.10022779043280182, 0.0979498861047836, 0.10022779043280182, 0.10022779043280182, 0.09567198177676538, 0.09567198177676538, 0.3621867881548975, 0.10250569476082004, 0.10022779043280182, 0.0979498861047836, 0.09111617312072894, 0.1275626423690205, 0.09567198177676538, 0.09567198177676538, 0.09567198177676538, 0.0774487471526196, 0.0774487471526196, 0.07517084282460136, 0.07517084282460136, 0.07517084282460136, 0.07289293849658314, 0.07061503416856492, 0.07289293849658314, 0.07517084282460136, 0.0774487471526196, 0.07517084282460136, 0.0774487471526196, 0.2460136674259681, 0.9043280182232346, 0.0774487471526196, 0.0774487471526196, 0.07972665148063782, 0.0774487471526196, 0.0774487471526196, 0.07517084282460136, 0.07517084282460136, 0.07517084282460136, 0.07289293849658314, 0.07289293849658314, 0.07289293849658314, 0.07289293849658314, 0.07289293849658314, 0.07289293849658314, 0.07289293849658314, 0.07289293849658314, 0.07289293849658314, 0.0683371298405467, 0.0683371298405467, 0.07061503416856492, 0.07289293849658314, 0.0683371298405467, 0.0683371298405467, 0.0683371298405467, 0.07289293849658314, 0.07289293849658314, 0.07289293849658314, 0.0683371298405467, 0.0683371298405467, 0.0683371298405467, 0.06605922551252848, 0.07061503416856492, 0.06605922551252848, 0.1548974943052392, 0.0683371298405467, 0.06605922551252848, 0.0683371298405467, 0.07061503416856492, 0.07061503416856492, 0.07289293849658314, 0.07061503416856492, 0.07061503416856492, 0.07061503416856492, 0.06605922551252848, 0.07517084282460136, 0.07061503416856492, 0.07061503416856492, 0.07061503416856492, 0.07061503416856492, 0.07061503416856492, 0.07061503416856492, 0.07289293849658314, 0.642369020501139, 0.8496583143507973, 0.7972665148063781, 0.5489749430523918, 0.3621867881548975, 0.25740318906605925, 0.0774487471526196, 0.0774487471526196, 0.07517084282460136, 0.07517084282460136, 0.07972665148063782, 0.0774487471526196, 0.07517084282460136, 0.07289293849658314, 0.07061503416856492, 0.0683371298405467, 0.0683371298405467, 0.0683371298405467, 0.0683371298405467, 0.0683371298405467, 0.06378132118451026, 0.06378132118451026, 0.06605922551252848, 0.06605922551252848, 0.06378132118451026, 0.06378132118451026, 0.06150341685649203, 0.06150341685649203, 0.06378132118451026, 0.06378132118451026, 0.06378132118451026, 0.06150341685649203, 0.06378132118451026, 0.06605922551252848, 0.06605922551252848, 0.06605922551252848, 0.0683371298405467, 0.06605922551252848, 0.06378132118451026, 0.06605922551252848, 0.06605922551252848, 0.0683371298405467, 0.0683371298405467, 0.07061503416856492, 0.07289293849658314, 0.07061503416856492, 0.0683371298405467, 0.0683371298405467, 0.0683371298405467, 0.06378132118451026, 0.06378132118451026, 0.06378132118451026, 0.06605922551252848, 0.0683371298405467, 0.07061503416856492, 0.07061503416856492, 0.07061503416856492, 0.07289293849658314, 0.07972665148063782, 0.07517084282460136, 0.0774487471526196, 0.08200455580865604, 0.0774487471526196, 0.0774487471526196, 0.07972665148063782, 0.07972665148063782, 0.08656036446469248, 0.0888382687927107, 0.09339407744874716, 0.0979498861047836, 0.0979498861047836, 0.0979498861047836, 0.0979498861047836, 0.09567198177676538, 0.09567198177676538, 0.09567198177676538, 0.0979498861047836, 0.0979498861047836, 0.0979498861047836, 0.10022779043280182, 0.10250569476082004, 0.10250569476082004, 0.1070615034168565, 0.11161731207289294, 0.11617312072892938, 0.14350797266514806, 0.7038724373576309], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Ricin_B_lectin.gap.json b/pfam_gap_rates/Ricin_B_lectin.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..fb6f57d4d2b13a43f8caa4d10f0ae51ed7fcb277
--- /dev/null
+++ b/pfam_gap_rates/Ricin_B_lectin.gap.json
@@ -0,0 +1 @@
+{"family": "Ricin_B_lectin", "n_seqs": 2015, "length": 152, "gap_rates": [0.654590570719603, 0.4635235732009926, 0.3617866004962779, 0.29429280397022334, 0.2669975186104218, 0.2506203473945409, 0.21985111662531018, 0.8694789081885856, 0.2833746898263027, 0.1662531017369727, 0.11464019851116625, 0.10669975186104218, 0.1022332506203474, 0.10173697270471464, 0.10074441687344914, 0.10124069478908189, 0.10074441687344914, 0.10669975186104218, 0.1205955334987593, 0.1325062034739454, 0.2109181141439206, 0.432258064516129, 0.9042183622828784, 0.5176178660049627, 0.14739454094292803, 0.12158808933002481, 0.08238213399503722, 0.07593052109181142, 0.07047146401985112, 0.0684863523573201, 0.0674937965260546, 0.06650124069478908, 0.06352357320099256, 0.062034739454094295, 0.08188585607940446, 0.08089330024813896, 0.10471464019851116, 0.07245657568238213, 0.46153846153846156, 0.8997518610421836, 0.9300248138957816, 0.9181141439205955, 0.7990074441687345, 0.03523573200992556, 0.02729528535980149, 0.022332506203473945, 0.042679900744416875, 0.021339950372208438, 0.021339950372208438, 0.9483870967741935, 0.8218362282878412, 0.05161290322580645, 0.050620347394540945, 0.014392059553349877, 0.011910669975186104, 0.01141439205955335, 0.01141439205955335, 0.010918114143920596, 0.3766749379652605, 0.4620347394540943, 0.9012406947890819, 0.9478908188585607, 0.9225806451612903, 0.8258064516129032, 0.5617866004962779, 0.0064516129032258064, 0.005955334987593052, 0.0064516129032258064, 0.005955334987593052, 0.005459057071960298, 0.008436724565756825, 0.062034739454094295, 0.39503722084367243, 0.6784119106699752, 0.9325062034739454, 0.5955334987593052, 0.3359801488833747, 0.19950372208436726, 0.14838709677419354, 0.02630272952853598, 0.01141439205955335, 0.009925558312655087, 0.01141439205955335, 0.010421836228287842, 0.009429280397022333, 0.0064516129032258064, 0.009429280397022333, 0.008436724565756825, 0.006947890818858561, 0.009925558312655087, 0.39602977667493794, 0.9081885856079405, 0.9364764267990074, 0.8858560794044665, 0.03821339950372209, 0.0228287841191067, 0.015384615384615385, 0.9017369727047146, 0.01488833746898263, 0.015384615384615385, 0.017866004962779156, 0.019851116625310174, 0.021339950372208438, 0.03325062034739454, 0.04119106699751861, 0.16327543424317617, 0.13300248138957815, 0.07146401985111663, 0.08138957816377171, 0.5205955334987593, 0.9220843672456576, 0.9478908188585607, 0.8992555831265509, 0.10173697270471464, 0.09578163771712159, 0.09727047146401985, 0.10372208436724566, 0.09975186104218363, 0.8555831265508684, 0.10967741935483871, 0.10024813895781638, 0.09627791563275434, 0.09727047146401985, 0.0977667493796526, 0.0977667493796526, 0.09975186104218363, 0.1032258064516129, 0.11116625310173697, 0.11612903225806452, 0.16476426799007443, 0.22034739454094293, 0.3905707196029777, 0.43672456575682383, 0.5622828784119107, 0.9300248138957816, 0.6446650124069478, 0.16526054590570718, 0.15732009925558313, 0.15682382133995038, 0.15930521091811414, 0.16129032258064516, 0.2109181141439206, 0.18461538461538463, 0.5364764267990074, 0.21935483870967742, 0.22233250620347395, 0.22977667493796525, 0.20694789081885856, 0.2109181141439206, 0.21588089330024815, 0.23573200992555832, 0.2531017369727047], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Rieske.gap.json b/pfam_gap_rates/Rieske.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..915f3e4940cf3c27b4b2f7f91267a4373a20a379
--- /dev/null
+++ b/pfam_gap_rates/Rieske.gap.json
@@ -0,0 +1 @@
+{"family": "Rieske", "n_seqs": 5000, "length": 113, "gap_rates": [0.8344, 0.604, 0.5374, 0.481, 0.4344, 0.418, 0.3964, 0.373, 0.3312, 0.3062, 0.2874, 0.2826, 0.7832, 0.3288, 0.2692, 0.2712, 0.2642, 0.2546, 0.241, 0.2342, 0.231, 0.214, 0.1974, 0.1838, 0.1716, 0.1538, 0.9488, 0.1402, 0.1354, 0.1322, 0.126, 0.1176, 0.1816, 0.2554, 0.918, 0.9334, 0.945, 0.949, 0.9476, 0.9398, 0.9264, 0.8858, 0.046, 0.0388, 0.0288, 0.027, 0.0188, 0.0164, 0.0128, 0.0078, 0.0058, 0.0042, 0.0046, 0.0042, 0.004, 0.0036, 0.0036, 0.0034, 0.003, 0.0078, 0.8744, 0.9144, 0.9322, 0.948, 0.937, 0.9272, 0.905, 0.8696, 0.0152, 0.0468, 0.7378, 0.0564, 0.054, 0.0454, 0.5274, 0.9302, 0.9412, 0.8848, 0.1238, 0.0418, 0.238, 0.0052, 0.0034, 0.003, 0.003, 0.0034, 0.004, 0.0042, 0.004, 0.0044, 0.0052, 0.008, 0.0098, 0.6484, 0.0128, 0.0146, 0.0158, 0.025, 0.035, 0.0486, 0.0622, 0.082, 0.9422, 0.1116, 0.1272, 0.1566, 0.2132, 0.3092, 0.4282, 0.5036, 0.5984, 0.7168, 0.9048], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/RmuC.gap.json b/pfam_gap_rates/RmuC.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a0b5d7090bcf5ea9f22799cc229644bc949cb673
--- /dev/null
+++ b/pfam_gap_rates/RmuC.gap.json
@@ -0,0 +1 @@
+{"family": "RmuC", "n_seqs": 1398, "length": 320, "gap_rates": [0.8004291845493562, 0.3426323319027182, 0.24678111587982832, 0.21530758226037197, 0.17024320457796852, 0.1380543633762518, 0.11874105865522175, 0.10515021459227468, 0.09155937052932761, 0.07725321888412018, 0.07439198855507868, 0.06866952789699571, 0.06723891273247497, 0.06509298998569385, 0.059370529327610874, 0.05722460658082976, 0.056509298998569386, 0.056509298998569386, 0.05436337625178827, 0.05221745350500715, 0.0536480686695279, 0.05293276108726753, 0.05293276108726753, 0.05293276108726753, 0.05078683834048641, 0.7739628040057225, 0.04935622317596566, 0.04864091559370529, 0.04792560801144492, 0.045064377682403435, 0.04291845493562232, 0.0407725321888412, 0.04005722460658083, 0.04005722460658083, 0.03934191702432046, 0.03862660944206009, 0.0407725321888412, 0.03791130185979971, 0.03791130185979971, 0.03719599427753934, 0.03719599427753934, 0.03719599427753934, 0.0357653791130186, 0.03719599427753934, 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\ No newline at end of file
diff --git a/pfam_gap_rates/Rotamase_2.gap.json b/pfam_gap_rates/Rotamase_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..2d1dcd286a8beada5ed6e832b00058003f4826cf
--- /dev/null
+++ b/pfam_gap_rates/Rotamase_2.gap.json
@@ -0,0 +1 @@
+{"family": "Rotamase_2", "n_seqs": 1132, "length": 171, "gap_rates": [0.39045936395759717, 0.26855123674911663, 0.22791519434628976, 0.20936395759717313, 0.20053003533568906, 0.1881625441696113, 0.18639575971731448, 0.18462897526501768, 0.18374558303886926, 0.18374558303886926, 0.18286219081272084, 0.18197879858657243, 0.18197879858657243, 0.18109540636042404, 0.18109540636042404, 0.17491166077738515, 0.17402826855123674, 0.1881625441696113, 0.21996466431095407, 0.20141342756183744, 0.19081272084805653, 0.18021201413427562, 0.8842756183745583, 0.2067137809187279, 0.1687279151943463, 0.1687279151943463, 0.13780918727915195, 0.9487632508833922, 0.9346289752650176, 0.13074204946996468, 0.11925795053003534, 0.10954063604240283, 0.09717314487632508, 0.09187279151943463, 0.9213780918727915, 0.09363957597173145, 0.08392226148409894, 0.06713780918727916, 0.05565371024734982, 0.053003533568904596, 0.046819787985865724, 0.046819787985865724, 0.04151943462897526, 0.037985865724381625, 0.0353356890459364, 0.036219081272084806, 0.038869257950530034, 0.036219081272084806, 0.037985865724381625, 0.037985865724381625, 0.8454063604240283, 0.8842756183745583, 0.9204946996466431, 0.9487632508833922, 0.9346289752650176, 0.9063604240282686, 0.8683745583038869, 0.8056537102473498, 0.27208480565371024, 0.3736749116607774, 0.9452296819787986, 0.23674911660777384, 0.053003533568904596, 0.037102473498233215, 0.030035335689045935, 0.024734982332155476, 0.018551236749116608, 0.018551236749116608, 0.01678445229681979, 0.0176678445229682, 0.0176678445229682, 0.053886925795053005, 0.03445229681978799, 0.03180212014134275, 0.8789752650176679, 0.9346289752650176, 0.9425795053003534, 0.9151943462897526, 0.842756183745583, 0.04151943462897526, 0.038869257950530034, 0.03445229681978799, 0.03445229681978799, 0.027385159010600707, 0.7014134275618374, 0.7968197879858657, 0.8780918727915195, 0.9249116607773852, 0.8250883392226148, 0.7676678445229682, 0.6563604240282686, 0.03180212014134275, 0.05653710247349823, 0.06448763250883392, 0.0636042402826855, 0.05565371024734982, 0.8074204946996466, 0.8551236749116607, 0.8975265017667845, 0.9222614840989399, 0.946113074204947, 0.9399293286219081, 0.9169611307420494, 0.8719081272084805, 0.8277385159010601, 0.7809187279151943, 0.046819787985865724, 0.18021201413427562, 0.08215547703180212, 0.05918727915194346, 0.09452296819787986, 0.8100706713780919, 0.8268551236749117, 0.8948763250883393, 0.9257950530035336, 0.9372791519434629, 0.9478798586572438, 0.9390459363957597, 0.9319787985865724, 0.916077738515901, 0.838339222614841, 0.8180212014134276, 0.7985865724381626, 0.011484098939929329, 0.009717314487632508, 0.046819787985865724, 0.01060070671378092, 0.007950530035335688, 0.006183745583038869, 0.00530035335689046, 0.00530035335689046, 0.00441696113074205, 0.0035335689045936395, 0.00441696113074205, 0.0035335689045936395, 0.00441696113074205, 0.0035335689045936395, 0.00441696113074205, 0.060954063604240286, 0.911660777385159, 0.01060070671378092, 0.007067137809187279, 0.006183745583038869, 0.006183745583038869, 0.9478798586572438, 0.006183745583038869, 0.006183745583038869, 0.007067137809187279, 0.9372791519434629, 0.007067137809187279, 0.007067137809187279, 0.01060070671378092, 0.007067137809187279, 0.0088339222614841, 0.012367491166077738, 0.018551236749116608, 0.02120141342756184, 0.05123674911660778, 0.0627208480565371, 0.07862190812720848, 0.10335689045936396, 0.10070671378091872, 0.1166077738515901, 0.12809187279151943, 0.13869257950530034, 0.14752650176678445, 0.1607773851590106, 0.1793286219081272, 0.20848056537102475, 0.299469964664311, 0.6333922261484098], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Rpr2.gap.json b/pfam_gap_rates/Rpr2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..9d0b7c162d6c25da8c5823e6c440171f2f6fe8bb
--- /dev/null
+++ b/pfam_gap_rates/Rpr2.gap.json
@@ -0,0 +1 @@
+{"family": "Rpr2", "n_seqs": 357, "length": 156, "gap_rates": [0.3165266106442577, 0.1792717086834734, 0.1568627450980392, 0.12605042016806722, 0.12044817927170869, 0.12044817927170869, 0.11484593837535013, 0.10644257703081232, 0.10644257703081232, 0.09523809523809523, 0.09243697478991597, 0.7142857142857143, 0.7366946778711485, 0.773109243697479, 0.7815126050420168, 0.7843137254901961, 0.7955182072829131, 0.803921568627451, 0.8067226890756303, 0.8123249299719888, 0.8123249299719888, 0.8151260504201681, 0.8179271708683473, 0.834733893557423, 0.84593837535014, 0.8627450980392157, 0.876750700280112, 0.8907563025210085, 0.9103641456582633, 0.9159663865546218, 0.9215686274509803, 0.9327731092436975, 0.9467787114845938, 0.9495798319327731, 0.938375350140056, 0.927170868347339, 0.9159663865546218, 0.9131652661064426, 0.9019607843137255, 0.8823529411764706, 0.865546218487395, 0.8543417366946778, 0.8431372549019608, 0.8263305322128851, 0.8151260504201681, 0.8123249299719888, 0.8123249299719888, 0.8067226890756303, 0.8067226890756303, 0.7983193277310925, 0.7927170868347339, 0.7843137254901961, 0.7787114845938375, 0.7563025210084033, 0.7282913165266106, 0.6414565826330533, 0.5658263305322129, 0.4789915966386555, 0.12885154061624648, 0.1092436974789916, 0.0700280112044818, 0.05042016806722689, 0.04201680672268908, 0.04201680672268908, 0.0392156862745098, 0.036414565826330535, 0.03361344537815126, 0.03361344537815126, 0.03361344537815126, 0.03081232492997199, 0.025210084033613446, 0.022408963585434174, 0.022408963585434174, 0.0196078431372549, 0.0196078431372549, 0.0196078431372549, 0.0196078431372549, 0.022408963585434174, 0.022408963585434174, 0.022408963585434174, 0.022408963585434174, 0.014005602240896359, 0.014005602240896359, 0.025210084033613446, 0.04201680672268908, 0.01680672268907563, 0.011204481792717087, 0.008403361344537815, 0.028011204481792718, 0.06722689075630252, 0.04201680672268908, 0.0, 0.0, 0.0, 0.0, 0.0028011204481792717, 0.0, 0.0028011204481792717, 0.0028011204481792717, 0.0028011204481792717, 0.0, 0.0056022408963585435, 0.0056022408963585435, 0.014005602240896359, 0.01680672268907563, 0.011204481792717087, 0.01680672268907563, 0.014005602240896359, 0.014005602240896359, 0.01680672268907563, 0.022408963585434174, 0.03081232492997199, 0.06442577030812324, 0.3473389355742297, 0.22128851540616246, 0.18487394957983194, 0.16246498599439776, 0.4369747899159664, 0.45938375350140054, 0.5770308123249299, 0.5546218487394958, 0.5518207282913166, 0.5574229691876751, 0.5546218487394958, 0.5070028011204482, 0.7254901960784313, 0.7647058823529411, 0.8095238095238095, 0.8543417366946778, 0.8683473389355743, 0.9019607843137255, 0.9103641456582633, 0.9215686274509803, 0.9355742296918768, 0.9467787114845938, 0.938375350140056, 0.927170868347339, 0.9131652661064426, 0.9047619047619048, 0.8935574229691877, 0.865546218487395, 0.8375350140056023, 0.7787114845938375, 0.742296918767507, 0.7170868347338936, 0.22128851540616246, 0.2913165266106443, 0.0896358543417367, 0.09523809523809523, 0.07563025210084033, 0.07563025210084033, 0.07563025210084033, 0.11484593837535013, 0.09803921568627451, 0.10644257703081232, 0.28851540616246496], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Rrp15p.gap.json b/pfam_gap_rates/Rrp15p.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..2a852812792084e111333d52b4ff09bd8f26bb9b
--- /dev/null
+++ b/pfam_gap_rates/Rrp15p.gap.json
@@ -0,0 +1 @@
+{"family": "Rrp15p", "n_seqs": 304, "length": 208, "gap_rates": [0.4407894736842105, 0.3618421052631579, 0.3223684210526316, 0.27631578947368424, 0.2532894736842105, 0.24342105263157895, 0.23684210526315788, 0.23684210526315788, 0.21052631578947367, 0.20065789473684212, 0.20394736842105263, 0.19407894736842105, 0.18421052631578946, 0.17434210526315788, 0.16447368421052633, 0.16447368421052633, 0.19736842105263158, 0.20723684210526316, 0.33223684210526316, 0.3848684210526316, 0.9111842105263158, 0.2894736842105263, 0.12171052631578948, 0.11513157894736842, 0.1118421052631579, 0.10855263157894737, 0.930921052631579, 0.10526315789473684, 0.10526315789473684, 0.10855263157894737, 0.10855263157894737, 0.09539473684210527, 0.08223684210526316, 0.08223684210526316, 0.08223684210526316, 0.06578947368421052, 0.6480263157894737, 0.8717105263157895, 0.8848684210526315, 0.9078947368421053, 0.9177631578947368, 0.9210526315789473, 0.9210526315789473, 0.930921052631579, 0.9407894736842105, 0.9210526315789473, 0.9210526315789473, 0.9177631578947368, 0.9144736842105263, 0.8947368421052632, 0.8782894736842105, 0.6578947368421053, 0.625, 0.05592105263157895, 0.08552631578947369, 0.08881578947368421, 0.09210526315789473, 0.05921052631578947, 0.9276315789473685, 0.9375, 0.944078947368421, 0.9407894736842105, 0.930921052631579, 0.9243421052631579, 0.06578947368421052, 0.07894736842105263, 0.0756578947368421, 0.06578947368421052, 0.05592105263157895, 0.05592105263157895, 0.05263157894736842, 0.039473684210526314, 0.039473684210526314, 0.029605263157894735, 0.029605263157894735, 0.03289473684210526, 0.03289473684210526, 0.029605263157894735, 0.029605263157894735, 0.029605263157894735, 0.029605263157894735, 0.029605263157894735, 0.029605263157894735, 0.039473684210526314, 0.039473684210526314, 0.8717105263157895, 0.5361842105263158, 0.046052631578947366, 0.049342105263157895, 0.046052631578947366, 0.05263157894736842, 0.18421052631578946, 0.48355263157894735, 0.5789473684210527, 0.5921052631578947, 0.6085526315789473, 0.7138157894736842, 0.7828947368421053, 0.8026315789473685, 0.8157894736842105, 0.8519736842105263, 0.8585526315789473, 0.8848684210526315, 0.9046052631578947, 0.9144736842105263, 0.9473684210526315, 0.9342105263157895, 0.9111842105263158, 0.9046052631578947, 0.8618421052631579, 0.8519736842105263, 0.8486842105263158, 0.805921052631579, 0.7861842105263158, 0.7697368421052632, 0.694078947368421, 0.6052631578947368, 0.5888157894736842, 0.5592105263157895, 0.47368421052631576, 0.07894736842105263, 0.13486842105263158, 0.08881578947368421, 0.019736842105263157, 0.023026315789473683, 0.023026315789473683, 0.01644736842105263, 0.013157894736842105, 0.013157894736842105, 0.013157894736842105, 0.013157894736842105, 0.009868421052631578, 0.013157894736842105, 0.013157894736842105, 0.023026315789473683, 0.02631578947368421, 0.02631578947368421, 0.02631578947368421, 0.029605263157894735, 0.029605263157894735, 0.02631578947368421, 0.03289473684210526, 0.03289473684210526, 0.03618421052631579, 0.03618421052631579, 0.039473684210526314, 0.13486842105263158, 0.05921052631578947, 0.06907894736842106, 0.06578947368421052, 0.06578947368421052, 0.0625, 0.06578947368421052, 0.06578947368421052, 0.07894736842105263, 0.09210526315789473, 0.14144736842105263, 0.19736842105263158, 0.18092105263157895, 0.32894736842105265, 0.2894736842105263, 0.8421052631578947, 0.6118421052631579, 0.5296052631578947, 0.5197368421052632, 0.8453947368421053, 0.8552631578947368, 0.8585526315789473, 0.868421052631579, 0.8782894736842105, 0.8914473684210527, 0.9046052631578947, 0.9144736842105263, 0.9375, 0.9375, 0.9046052631578947, 0.8980263157894737, 0.881578947368421, 0.8782894736842105, 0.8651315789473685, 0.8585526315789473, 0.8552631578947368, 0.8453947368421053, 0.3717105263157895, 0.1611842105263158, 0.14144736842105263, 0.13815789473684212, 0.125, 0.11842105263157894, 0.13815789473684212, 0.14802631578947367, 0.14802631578947367, 0.930921052631579, 0.9375, 0.9407894736842105, 0.930921052631579, 0.930921052631579, 0.13157894736842105, 0.13157894736842105, 0.14473684210526316, 0.14802631578947367, 0.1513157894736842, 0.1513157894736842, 0.16776315789473684, 0.17434210526315788, 0.1875, 0.20394736842105263, 0.5263157894736842], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/RsgA_N.gap.json b/pfam_gap_rates/RsgA_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e4bb9ab6f19def696f610e7bad0cef2050a381e6
--- /dev/null
+++ b/pfam_gap_rates/RsgA_N.gap.json
@@ -0,0 +1 @@
+{"family": "RsgA_N", "n_seqs": 760, "length": 63, "gap_rates": [0.28289473684210525, 0.05789473684210526, 0.038157894736842106, 0.030263157894736843, 0.02236842105263158, 0.018421052631578946, 0.017105263157894738, 0.015789473684210527, 0.013157894736842105, 0.011842105263157895, 0.011842105263157895, 0.011842105263157895, 0.010526315789473684, 0.010526315789473684, 0.010526315789473684, 0.8407894736842105, 0.010526315789473684, 0.006578947368421052, 0.002631578947368421, 0.9421052631578948, 0.7171052631578947, 0.002631578947368421, 0.002631578947368421, 0.002631578947368421, 0.002631578947368421, 0.002631578947368421, 0.002631578947368421, 0.0013157894736842105, 0.0013157894736842105, 0.0, 0.0, 0.0, 0.0, 0.009210526315789473, 0.007894736842105263, 0.775, 0.8065789473684211, 0.7710526315789473, 0.017105263157894738, 0.018421052631578946, 0.007894736842105263, 0.002631578947368421, 0.0013157894736842105, 0.7684210526315789, 0.0013157894736842105, 0.0013157894736842105, 0.0013157894736842105, 0.0013157894736842105, 0.0013157894736842105, 0.0013157894736842105, 0.0013157894736842105, 0.003947368421052632, 0.9434210526315789, 0.9263157894736842, 0.019736842105263157, 0.04868421052631579, 0.10921052631578948, 0.175, 0.25394736842105264, 0.3368421052631579, 0.4052631578947368, 0.45263157894736844, 0.506578947368421], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Rtf2.gap.json b/pfam_gap_rates/Rtf2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f207fa59552b157c469ee8594a649739073a06bd
--- /dev/null
+++ b/pfam_gap_rates/Rtf2.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Rtt106.gap.json b/pfam_gap_rates/Rtt106.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..634b95fb9938ca251708d5efc6fb9c2b0c0b76a1
--- /dev/null
+++ b/pfam_gap_rates/Rtt106.gap.json
@@ -0,0 +1 @@
+{"family": "Rtt106", "n_seqs": 853, "length": 106, "gap_rates": [0.839390386869871, 0.39976553341148885, 0.28604923798358733, 0.2532239155920281, 0.2063305978898007, 0.18522860492379836, 0.42907385697538103, 0.4126611957796014, 0.4079718640093787, 0.0668229777256741, 0.04220398593200469, 0.03985932004689332, 0.031652989449003514, 0.031652989449003514, 0.026963657678780773, 0.02579132473622509, 0.0246189917936694, 0.022274325908558032, 0.01992966002344666, 0.017584994138335287, 0.010550996483001172, 0.010550996483001172, 0.010550996483001172, 0.4654161781946073, 0.012895662368112544, 0.007033997655334115, 0.005861664712778429, 0.015240328253223915, 0.017584994138335287, 0.004689331770222743, 0.004689331770222743, 0.0035169988276670576, 0.0035169988276670576, 0.0035169988276670576, 0.0035169988276670576, 0.004689331770222743, 0.005861664712778429, 0.005861664712778429, 0.007033997655334115, 0.007033997655334115, 0.008206330597889801, 0.007033997655334115, 0.008206330597889801, 0.13716295427901523, 0.13481828839390386, 0.6893317702227433, 0.9097303634232122, 0.9202813599062134, 0.7362250879249707, 0.6670574443141852, 0.012895662368112544, 0.010550996483001172, 0.012895662368112544, 0.009378663540445486, 0.009378663540445486, 0.009378663540445486, 0.009378663540445486, 0.009378663540445486, 0.008206330597889801, 0.008206330597889801, 0.008206330597889801, 0.008206330597889801, 0.008206330597889801, 0.8733880422039859, 0.8815943728018757, 0.9003516998827668, 0.94021101992966, 0.9460726846424384, 0.9308323563892146, 0.8851113716295428, 0.8757327080890973, 0.8733880422039859, 0.023446658851113716, 0.011723329425556858, 0.47479484173505276, 0.5849941383352872, 0.1477139507620164, 0.011723329425556858, 0.012895662368112544, 0.015240328253223915, 0.015240328253223915, 0.015240328253223915, 0.015240328253223915, 0.015240328253223915, 0.015240328253223915, 0.01406799531066823, 0.015240328253223915, 0.016412661195779603, 0.017584994138335287, 0.01992966002344666, 0.021101992966002344, 0.021101992966002344, 0.022274325908558032, 0.022274325908558032, 0.022274325908558032, 0.0246189917936694, 0.026963657678780773, 0.035169988276670575, 0.04220398593200469, 0.05158264947245018, 0.08089097303634232, 0.0914419695193435, 0.11840562719812427, 0.14654161781946073, 0.3071512309495897, 0.6166471277842908], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/RyR.gap.json b/pfam_gap_rates/RyR.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..96c951465c816571c388abd0c5811bfc9df177b1
--- /dev/null
+++ b/pfam_gap_rates/RyR.gap.json
@@ -0,0 +1 @@
+{"family": "RyR", "n_seqs": 506, "length": 91, "gap_rates": [0.1600790513833992, 0.15612648221343872, 0.15019762845849802, 0.15019762845849802, 0.14624505928853754, 0.1422924901185771, 0.1422924901185771, 0.1442687747035573, 0.1383399209486166, 0.1324110671936759, 0.13043478260869565, 0.12450592885375494, 0.11857707509881422, 0.12055335968379446, 0.116600790513834, 0.11462450592885376, 0.1067193675889328, 0.10276679841897234, 0.09486166007905138, 0.08498023715415019, 0.05138339920948617, 0.04743083003952569, 0.03557312252964427, 0.03162055335968379, 0.043478260869565216, 0.025691699604743084, 0.025691699604743084, 0.023715415019762844, 0.021739130434782608, 0.021739130434782608, 0.019762845849802372, 0.021739130434782608, 0.021739130434782608, 0.021739130434782608, 0.017786561264822136, 0.017786561264822136, 0.015810276679841896, 0.021739130434782608, 0.023715415019762844, 0.02766798418972332, 0.025691699604743084, 0.025691699604743084, 0.025691699604743084, 0.02766798418972332, 0.023715415019762844, 0.019762845849802372, 0.23122529644268774, 0.23122529644268774, 0.23122529644268774, 0.23122529644268774, 0.21146245059288538, 0.21146245059288538, 0.045454545454545456, 0.03557312252964427, 0.03557312252964427, 0.03557312252964427, 0.037549407114624504, 0.037549407114624504, 0.037549407114624504, 0.037549407114624504, 0.037549407114624504, 0.03557312252964427, 0.03557312252964427, 0.03557312252964427, 0.03557312252964427, 0.03557312252964427, 0.041501976284584984, 0.041501976284584984, 0.041501976284584984, 0.041501976284584984, 0.04743083003952569, 0.04940711462450593, 0.05138339920948617, 0.0533596837944664, 0.05731225296442688, 0.06126482213438735, 0.06126482213438735, 0.06719367588932806, 0.07312252964426877, 0.07707509881422925, 0.07905138339920949, 0.07905138339920949, 0.08102766798418973, 0.08695652173913043, 0.09288537549407115, 0.09288537549407115, 0.09486166007905138, 0.09683794466403162, 0.10474308300395258, 0.23122529644268774, 0.9169960474308301], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/S-AdoMet_synt_M.gap.json b/pfam_gap_rates/S-AdoMet_synt_M.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..31b5bab2f36eac4cb75eba409adde0e293b23a36
--- /dev/null
+++ b/pfam_gap_rates/S-AdoMet_synt_M.gap.json
@@ -0,0 +1 @@
+{"family": "S-AdoMet_synt_M", "n_seqs": 2665, "length": 139, "gap_rates": [0.6784240150093809, 0.09643527204502814, 0.027392120075046905, 0.02476547842401501, 0.01951219512195122, 0.01876172607879925, 0.01726078799249531, 0.016135084427767354, 0.014634146341463415, 0.011632270168855536, 0.011632270168855536, 0.011632270168855536, 0.011632270168855536, 0.011632270168855536, 0.011632270168855536, 0.011632270168855536, 0.01200750469043152, 0.011632270168855536, 0.011632270168855536, 0.01200750469043152, 0.01125703564727955, 0.01050656660412758, 0.01050656660412758, 0.01050656660412758, 0.01050656660412758, 0.010881801125703566, 0.010881801125703566, 0.01050656660412758, 0.01050656660412758, 0.011632270168855536, 0.01125703564727955, 0.011632270168855536, 0.01200750469043152, 0.01200750469043152, 0.01125703564727955, 0.011632270168855536, 0.011632270168855536, 0.012382739212007506, 0.01200750469043152, 0.011632270168855536, 0.0150093808630394, 0.0225140712945591, 0.03789868667917448, 0.02851782363977486, 0.02401500938086304, 0.01951219512195122, 0.01876172607879925, 0.018386491557223265, 0.0150093808630394, 0.01275797373358349, 0.01275797373358349, 0.013133208255159476, 0.013133208255159476, 0.01200750469043152, 0.011632270168855536, 0.01200750469043152, 0.01125703564727955, 0.010881801125703566, 0.01125703564727955, 0.01050656660412758, 0.013883677298311446, 0.8739212007504691, 0.9347091932457786, 0.926829268292683, 0.6742964352720451, 0.0450281425891182, 0.8600375234521576, 0.9478424015009381, 0.9298311444652908, 0.8281425891181988, 0.04052532833020638, 0.03564727954971857, 0.03264540337711069, 0.0300187617260788, 0.010131332082551596, 0.010131332082551596, 0.00900562851782364, 0.00900562851782364, 0.00900562851782364, 0.00900562851782364, 0.00900562851782364, 0.00900562851782364, 0.00900562851782364, 0.00900562851782364, 0.00900562851782364, 0.009380863039399626, 0.00975609756097561, 0.01801125703564728, 0.01801125703564728, 0.8356472795497186, 0.9106941838649155, 0.924953095684803, 0.9403377110694184, 0.9151969981238274, 0.9054409005628518, 0.05778611632270169, 0.01801125703564728, 0.01651031894934334, 0.010881801125703566, 0.010881801125703566, 0.011632270168855536, 0.011632270168855536, 0.013883677298311446, 0.01275797373358349, 0.013133208255159476, 0.0150093808630394, 0.018386491557223265, 0.014634146341463415, 0.03377110694183865, 0.01425891181988743, 0.02776735459662289, 0.01350844277673546, 0.01425891181988743, 0.09193245778611632, 0.9414634146341463, 0.9467166979362102, 0.9335834896810506, 0.04427767354596623, 0.02776735459662289, 0.9407129455909944, 0.949718574108818, 0.9118198874296435, 0.03414634146341464, 0.05553470919324578, 0.07279549718574109, 0.0701688555347092, 0.41088180112570355, 0.3433395872420263, 0.02101313320825516, 0.020637898686679174, 0.020637898686679174, 0.020637898686679174, 0.02101313320825516, 0.02176360225140713, 0.02401500938086304, 0.025140712945590993, 0.025891181988742965, 0.0348968105065666, 0.042401500938086305], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/S4_2.gap.json b/pfam_gap_rates/S4_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c8428fe621f5b4aa4f7c2dc8ca4f1cc9ca801d32
--- /dev/null
+++ b/pfam_gap_rates/S4_2.gap.json
@@ -0,0 +1 @@
+{"family": "S4_2", "n_seqs": 889, "length": 66, "gap_rates": [0.42744656917885265, 0.265466816647919, 0.1766029246344207, 0.1372328458942632, 0.08661417322834646, 0.06186726659167604, 0.030371203599550055, 0.01687289088863892, 0.013498312710911136, 0.01124859392575928, 0.007874015748031496, 0.007874015748031496, 0.006749156355455568, 0.006749156355455568, 0.006749156355455568, 0.006749156355455568, 0.006749156355455568, 0.00562429696287964, 0.007874015748031496, 0.006749156355455568, 0.007874015748031496, 0.00562429696287964, 0.0044994375703037125, 0.00562429696287964, 0.0011248593925759281, 0.0011248593925759281, 0.0011248593925759281, 0.0011248593925759281, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0022497187851518562, 0.0011248593925759281, 0.0011248593925759281, 0.0011248593925759281, 0.0011248593925759281, 0.0011248593925759281, 0.0011248593925759281, 0.0011248593925759281, 0.003374578177727784, 0.003374578177727784, 0.003374578177727784, 0.003374578177727784, 0.003374578177727784, 0.003374578177727784, 0.003374578177727784, 0.003374578177727784, 0.003374578177727784, 0.003374578177727784, 0.003374578177727784, 0.003374578177727784, 0.003374578177727784, 0.003374578177727784, 0.00562429696287964, 0.010123734533183352, 0.8222722159730034, 0.012373453318335208, 0.043869516310461196, 0.09673790776152981, 0.1327334083239595, 0.16197975253093364, 0.2080989876265467, 0.24971878515185603, 0.9077615298087739], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/SAD_SRA.gap.json b/pfam_gap_rates/SAD_SRA.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..2f535dae34163cc55edc3467eb4b56df8e584930
--- /dev/null
+++ b/pfam_gap_rates/SAD_SRA.gap.json
@@ -0,0 +1 @@
+{"family": "SAD_SRA", "n_seqs": 627, "length": 202, "gap_rates": [0.8755980861244019, 0.2679425837320574, 0.24401913875598086, 0.23125996810207336, 0.2838915470494418, 0.14992025518341306, 0.12121212121212122, 0.11483253588516747, 0.11004784688995216, 0.09888357256778309, 0.09728867623604466, 0.09728867623604466, 0.09409888357256778, 0.09409888357256778, 0.09409888357256778, 0.09250398724082935, 0.08771929824561403, 0.08452950558213716, 0.07655502392344497, 0.0685805422647528, 0.06539074960127592, 0.06539074960127592, 0.06379585326953748, 0.05741626794258373, 0.05582137161084529, 0.05582137161084529, 0.05582137161084529, 0.05422647527910686, 0.05263157894736842, 0.05263157894736842, 0.05422647527910686, 0.05422647527910686, 0.05422647527910686, 0.05422647527910686, 0.05422647527910686, 0.05741626794258373, 0.13875598086124402, 0.05582137161084529, 0.05582137161084529, 0.05582137161084529, 0.5422647527910686, 0.6586921850079744, 0.7192982456140351, 0.9234449760765551, 0.9393939393939394, 0.9362041467304625, 0.7320574162679426, 0.7049441786283892, 0.5470494417862839, 0.5279106858054227, 0.05422647527910686, 0.05422647527910686, 0.05422647527910686, 0.05422647527910686, 0.05422647527910686, 0.05582137161084529, 0.06220095693779904, 0.06698564593301436, 0.06220095693779904, 0.06220095693779904, 0.06698564593301436, 0.05901116427432217, 0.9362041467304625, 0.11483253588516747, 0.05582137161084529, 0.051036682615629984, 0.05422647527910686, 0.051036682615629984, 0.049441786283891544, 0.05263157894736842, 0.05263157894736842, 0.051036682615629984, 0.05582137161084529, 0.05422647527910686, 0.051036682615629984, 0.05263157894736842, 0.05263157894736842, 0.0685805422647528, 0.07496012759170653, 0.3524720893141946, 0.7320574162679426, 0.6044657097288676, 0.2838915470494418, 0.18341307814992025, 0.5358851674641149, 0.5231259968102073, 0.14513556618819776, 0.569377990430622, 0.6666666666666666, 0.7607655502392344, 0.8931419457735247, 0.9138755980861244, 0.9250398724082934, 0.9250398724082934, 0.9186602870813397, 0.9059011164274322, 0.8548644338118022, 0.6810207336523126, 0.6236044657097288, 0.5582137161084529, 0.11323763955342903, 0.10526315789473684, 0.07655502392344497, 0.0733652312599681, 0.07177033492822966, 0.0733652312599681, 0.06220095693779904, 0.8580542264752791, 0.049441786283891544, 0.04784688995215311, 0.044657097288676235, 0.0430622009569378, 0.0430622009569378, 0.0430622009569378, 0.04146730462519936, 0.044657097288676235, 0.046251993620414676, 0.046251993620414676, 0.8740031897926634, 0.8787878787878788, 0.8787878787878788, 0.8819776714513556, 0.8819776714513556, 0.8819776714513556, 0.8835725677830941, 0.8899521531100478, 0.8819776714513556, 0.8819776714513556, 0.8819776714513556, 0.8803827751196173, 0.8787878787878788, 0.8771929824561403, 0.8692185007974481, 0.0430622009569378, 0.0430622009569378, 0.044657097288676235, 0.044657097288676235, 0.04146730462519936, 0.0430622009569378, 0.044657097288676235, 0.044657097288676235, 0.044657097288676235, 0.044657097288676235, 0.05422647527910686, 0.6427432216905901, 0.7990430622009569, 0.8835725677830941, 0.9186602870813397, 0.9425837320574163, 0.9362041467304625, 0.9011164274322169, 0.8548644338118022, 0.7177033492822966, 0.3508771929824561, 0.08452950558213716, 0.44019138755980863, 0.17862838915470494, 0.529505582137161, 0.11323763955342903, 0.08293460925039872, 0.08133971291866028, 0.07017543859649122, 0.08133971291866028, 0.05263157894736842, 0.3668261562998405, 0.8309409888357256, 0.11323763955342903, 0.046251993620414676, 0.046251993620414676, 0.046251993620414676, 0.046251993620414676, 0.046251993620414676, 0.046251993620414676, 0.04784688995215311, 0.049441786283891544, 0.04784688995215311, 0.049441786283891544, 0.051036682615629984, 0.05741626794258373, 0.06379585326953748, 0.06379585326953748, 0.06698564593301436, 0.10685805422647528, 0.07814992025518341, 0.9138755980861244, 0.11642743221690591, 0.11483253588516747, 0.10047846889952153, 0.09888357256778309, 0.10047846889952153, 0.09728867623604466, 0.09090909090909091, 0.09090909090909091, 0.09090909090909091, 0.09090909090909091, 0.09250398724082935, 0.09409888357256778, 0.11164274322169059, 0.11483253588516747, 0.14035087719298245, 0.24561403508771928, 0.3875598086124402], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/SAE2.gap.json b/pfam_gap_rates/SAE2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..71136e78321f2bb1387f7378c78e0d6d7e89bbf2
--- /dev/null
+++ b/pfam_gap_rates/SAE2.gap.json
@@ -0,0 +1 @@
+{"family": "SAE2", "n_seqs": 171, "length": 130, "gap_rates": [0.5321637426900585, 0.4853801169590643, 0.47953216374269003, 0.47953216374269003, 0.47953216374269003, 0.47953216374269003, 0.4678362573099415, 0.4619883040935672, 0.49122807017543857, 0.4619883040935672, 0.47368421052631576, 0.45614035087719296, 0.45614035087719296, 0.45614035087719296, 0.45614035087719296, 0.45614035087719296, 0.45614035087719296, 0.8947368421052632, 0.8947368421052632, 0.45614035087719296, 0.45614035087719296, 0.45614035087719296, 0.672514619883041, 0.5555555555555556, 0.5555555555555556, 0.4678362573099415, 0.45614035087719296, 0.4444444444444444, 0.43859649122807015, 0.43859649122807015, 0.43859649122807015, 0.4444444444444444, 0.4502923976608187, 0.4444444444444444, 0.4444444444444444, 0.4444444444444444, 0.4444444444444444, 0.4444444444444444, 0.49122807017543857, 0.49122807017543857, 0.5087719298245614, 0.5321637426900585, 0.52046783625731, 0.7953216374269005, 0.8538011695906432, 0.8947368421052632, 0.9181286549707602, 0.9005847953216374, 0.8771929824561403, 0.8128654970760234, 0.7485380116959064, 0.49707602339181284, 0.5497076023391813, 0.543859649122807, 0.5263157894736842, 0.5029239766081871, 0.47953216374269003, 0.47368421052631576, 0.47368421052631576, 0.47953216374269003, 0.4853801169590643, 0.4853801169590643, 0.4678362573099415, 0.4678362573099415, 0.4678362573099415, 0.47953216374269003, 0.49707602339181284, 0.4853801169590643, 0.52046783625731, 0.5263157894736842, 0.9181286549707602, 0.8654970760233918, 0.543859649122807, 0.52046783625731, 0.5087719298245614, 0.5029239766081871, 0.5087719298245614, 0.5087719298245614, 0.5029239766081871, 0.49707602339181284, 0.49707602339181284, 0.45614035087719296, 0.9298245614035088, 0.9415204678362573, 0.9415204678362573, 0.9473684210526315, 0.9415204678362573, 0.935672514619883, 0.9239766081871345, 0.4444444444444444, 0.4444444444444444, 0.4269005847953216, 0.42105263157894735, 0.42105263157894735, 0.4093567251461988, 0.39766081871345027, 0.34502923976608185, 0.32748538011695905, 0.23391812865497075, 0.19298245614035087, 0.15789473684210525, 0.26900584795321636, 0.2222222222222222, 0.1695906432748538, 0.16374269005847952, 0.029239766081871343, 0.029239766081871343, 0.029239766081871343, 0.023391812865497075, 0.023391812865497075, 0.023391812865497075, 0.023391812865497075, 0.023391812865497075, 0.023391812865497075, 0.023391812865497075, 0.023391812865497075, 0.023391812865497075, 0.023391812865497075, 0.023391812865497075, 0.023391812865497075, 0.023391812865497075, 0.023391812865497075, 0.023391812865497075, 0.023391812865497075, 0.023391812865497075, 0.04093567251461988, 0.04093567251461988, 0.04678362573099415, 0.1871345029239766, 0.26900584795321636], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/SAM_adeno_trans.gap.json b/pfam_gap_rates/SAM_adeno_trans.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..0a909a0140025c58aec2e4015966a41213b592f4
--- /dev/null
+++ b/pfam_gap_rates/SAM_adeno_trans.gap.json
@@ -0,0 +1 @@
+{"family": "SAM_adeno_trans", "n_seqs": 548, "length": 292, "gap_rates": [0.23722627737226276, 0.12773722627737227, 0.11678832116788321, 0.11131386861313869, 0.11131386861313869, 0.11131386861313869, 0.11131386861313869, 0.11131386861313869, 0.19160583941605838, 0.15145985401459855, 0.10948905109489052, 0.11131386861313869, 0.11313868613138686, 0.11313868613138686, 0.10766423357664233, 0.10766423357664233, 0.0948905109489051, 0.09124087591240876, 0.09124087591240876, 0.08941605839416059, 0.08759124087591241, 0.08759124087591241, 0.08759124087591241, 0.08759124087591241, 0.1259124087591241, 0.09124087591240876, 0.08759124087591241, 0.08759124087591241, 0.08759124087591241, 0.08759124087591241, 0.08941605839416059, 0.0948905109489051, 0.09671532846715329, 0.08759124087591241, 0.09306569343065693, 0.08759124087591241, 0.08029197080291971, 0.07664233576642336, 0.07664233576642336, 0.07846715328467153, 0.08029197080291971, 0.07846715328467153, 0.07846715328467153, 0.07846715328467153, 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\ No newline at end of file
diff --git a/pfam_gap_rates/SART-1.gap.json b/pfam_gap_rates/SART-1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b97c4fe6a59047ac182f26ae496481699ad9e595
--- /dev/null
+++ b/pfam_gap_rates/SART-1.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/SBDS.gap.json b/pfam_gap_rates/SBDS.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..2bd3bad7e681483306c18215b33f5e85ce99cc22
--- /dev/null
+++ b/pfam_gap_rates/SBDS.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/SBP_bac_6.gap.json b/pfam_gap_rates/SBP_bac_6.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..45ca79ebb9ad92fa6bf7fb5d35bb29eca3f016e4
--- /dev/null
+++ b/pfam_gap_rates/SBP_bac_6.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/SEO_C.gap.json b/pfam_gap_rates/SEO_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..5a1e05498a9f2d09eb92b7827c273f4638d55fdc
--- /dev/null
+++ b/pfam_gap_rates/SEO_C.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/SEO_N.gap.json b/pfam_gap_rates/SEO_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..936a5d9dfc2fd7c21f043f87cb9d5c3f60e20db3
--- /dev/null
+++ b/pfam_gap_rates/SEO_N.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/SET.gap.json b/pfam_gap_rates/SET.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..8d2b621529fb01568a5c7da7caaf53b4585b3ef7
--- /dev/null
+++ b/pfam_gap_rates/SET.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/SF3a60_bindingd.gap.json b/pfam_gap_rates/SF3a60_bindingd.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f3c2b8fb713e7d15d38aa9058f1fa8f309c862d2
--- /dev/null
+++ b/pfam_gap_rates/SF3a60_bindingd.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/SH3_9.gap.json b/pfam_gap_rates/SH3_9.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..1312959176c89269749c468788163581a86a6aa1
--- /dev/null
+++ b/pfam_gap_rates/SH3_9.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/SHR3_chaperone.gap.json b/pfam_gap_rates/SHR3_chaperone.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c7a46bf000d757477a7eb5a00bd99fc14155f205
--- /dev/null
+++ b/pfam_gap_rates/SHR3_chaperone.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/SID-1_RNA_chan.gap.json b/pfam_gap_rates/SID-1_RNA_chan.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..34db6fad2fa203e8e720bf53a6caf832e665d936
--- /dev/null
+++ b/pfam_gap_rates/SID-1_RNA_chan.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/SIP1.gap.json b/pfam_gap_rates/SIP1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..1380fad336302316f639c8b1b1adf49d8ff9ee47
--- /dev/null
+++ b/pfam_gap_rates/SIP1.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/SLC3A2_N.gap.json b/pfam_gap_rates/SLC3A2_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..add68a5443242e5da7dc961a10e47cb7ca81adcd
--- /dev/null
+++ b/pfam_gap_rates/SLC3A2_N.gap.json
@@ -0,0 +1 @@
+{"family": "SLC3A2_N", "n_seqs": 124, "length": 80, "gap_rates": [0.8548387096774194, 0.8064516129032258, 0.7741935483870968, 0.7580645161290323, 0.7338709677419355, 0.6774193548387096, 0.5806451612903226, 0.5, 0.9354838709677419, 0.8790322580645161, 0.4596774193548387, 0.27419354838709675, 0.23387096774193547, 0.1774193548387097, 0.13709677419354838, 0.12096774193548387, 0.10483870967741936, 0.0967741935483871, 0.08870967741935484, 0.08870967741935484, 0.08870967741935484, 0.07258064516129033, 0.07258064516129033, 0.056451612903225805, 0.056451612903225805, 0.056451612903225805, 0.8709677419354839, 0.056451612903225805, 0.04838709677419355, 0.04838709677419355, 0.04838709677419355, 0.04032258064516129, 0.04032258064516129, 0.04032258064516129, 0.04838709677419355, 0.024193548387096774, 0.016129032258064516, 0.016129032258064516, 0.008064516129032258, 0.008064516129032258, 0.008064516129032258, 0.008064516129032258, 0.016129032258064516, 0.016129032258064516, 0.016129032258064516, 0.016129032258064516, 0.016129032258064516, 0.016129032258064516, 0.016129032258064516, 0.016129032258064516, 0.008064516129032258, 0.008064516129032258, 0.008064516129032258, 0.008064516129032258, 0.008064516129032258, 0.016129032258064516, 0.016129032258064516, 0.024193548387096774, 0.04032258064516129, 0.04032258064516129, 0.04838709677419355, 0.04838709677419355, 0.04838709677419355, 0.06451612903225806, 0.06451612903225806, 0.08064516129032258, 0.10483870967741936, 0.12903225806451613, 0.12903225806451613, 0.11290322580645161, 0.11290322580645161, 0.11290322580645161, 0.0967741935483871, 0.11290322580645161, 0.11290322580645161, 0.12903225806451613, 0.14516129032258066, 0.27419354838709675, 0.28225806451612906, 0.7338709677419355], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/SLT_2.gap.json b/pfam_gap_rates/SLT_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..1b2d42dd9fa71cb3c3319e9aac459e713aaeaa85
--- /dev/null
+++ b/pfam_gap_rates/SLT_2.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/SMC_ScpB.gap.json b/pfam_gap_rates/SMC_ScpB.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..76ca2208325bfb60edae325660c6862a5f2d302a
--- /dev/null
+++ b/pfam_gap_rates/SMC_ScpB.gap.json
@@ -0,0 +1 @@
+{"family": "SMC_ScpB", "n_seqs": 1774, "length": 169, "gap_rates": [0.8235625704622322, 0.10315670800450959, 0.042277339346110485, 0.040022547914317926, 0.03720405862457723, 0.03494926719278467, 0.03325817361894025, 0.03100338218714769, 0.02987598647125141, 0.029312288613303268, 0.03156708004509583, 0.02762119503945885, 0.02705749718151071, 0.8472378804960541, 0.02593010146561443, 0.02536640360766629, 0.02480270574971815, 0.02367531003382187, 0.02367531003382187, 0.02367531003382187, 0.023111612175873732, 0.023111612175873732, 0.023111612175873732, 0.02142051860202931, 0.1076662908680947, 0.9199549041713642, 0.8906426155580609, 0.08173618940248027, 0.020856820744081173, 0.8979706877113867, 0.9419391206313416, 0.9295377677564826, 0.8647125140924464, 0.017474633596392335, 0.016347237880496055, 0.015783540022547914, 0.015783540022547914, 0.016347237880496055, 0.016347237880496055, 0.016347237880496055, 0.016347237880496055, 0.015219842164599774, 0.014092446448703494, 0.013528748590755355, 0.013528748590755355, 0.013528748590755355, 0.014092446448703494, 0.014092446448703494, 0.9036076662908681, 0.36189402480270577, 0.342728297632469, 0.016347237880496055, 0.014092446448703494, 0.014092446448703494, 0.014092446448703494, 0.013528748590755355, 0.014092446448703494, 0.014092446448703494, 0.014656144306651634, 0.014092446448703494, 0.016347237880496055, 0.013528748590755355, 0.012401352874859075, 0.012401352874859075, 0.012401352874859075, 0.012401352874859075, 0.012401352874859075, 0.011837655016910935, 0.011837655016910935, 0.011837655016910935, 0.011837655016910935, 0.011273957158962795, 0.011273957158962795, 0.011273957158962795, 0.011273957158962795, 0.011273957158962795, 0.011273957158962795, 0.011837655016910935, 0.011837655016910935, 0.011273957158962795, 0.011837655016910935, 0.011837655016910935, 0.012965050732807215, 0.3579481397970688, 0.16459977452085683, 0.06200676437429538, 0.05467869222096956, 0.010710259301014656, 0.010146561443066516, 0.010146561443066516, 0.010146561443066516, 0.010146561443066516, 0.010146561443066516, 0.009019165727170236, 0.009019165727170236, 0.009019165727170236, 0.008455467869222097, 0.008455467869222097, 0.008455467869222097, 0.008455467869222097, 0.009019165727170236, 0.009582863585118376, 0.008455467869222097, 0.008455467869222097, 0.008455467869222097, 0.009019165727170236, 0.009019165727170236, 0.009019165727170236, 0.009019165727170236, 0.008455467869222097, 0.008455467869222097, 0.008455467869222097, 0.008455467869222097, 0.008455467869222097, 0.008455467869222097, 0.009019165727170236, 0.009582863585118376, 0.009019165727170236, 0.7367531003382187, 0.009019165727170236, 0.008455467869222097, 0.008455467869222097, 0.008455467869222097, 0.008455467869222097, 0.010146561443066516, 0.009019165727170236, 0.009019165727170236, 0.008455467869222097, 0.007328072153325817, 0.007328072153325817, 0.007328072153325817, 0.007328072153325817, 0.007328072153325817, 0.007328072153325817, 0.007328072153325817, 0.007328072153325817, 0.007328072153325817, 0.0794813979706877, 0.07271702367531004, 0.08680947012401354, 0.07046223224351747, 0.024239007891770012, 0.02142051860202931, 0.1189402480270575, 0.014656144306651634, 0.009582863585118376, 0.009019165727170236, 0.009019165727170236, 0.009019165727170236, 0.009019165727170236, 0.009019165727170236, 0.009019165727170236, 0.009582863585118376, 0.009582863585118376, 0.009582863585118376, 0.009582863585118376, 0.009582863585118376, 0.009582863585118376, 0.010146561443066516, 0.011273957158962795, 0.012965050732807215, 0.015219842164599774, 0.032130777903043965, 0.043968432919954906, 0.04904171364148816, 0.05186020293122886, 0.06200676437429538, 0.1133032694475761, 0.5270574971815107], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/SMC_hinge.gap.json b/pfam_gap_rates/SMC_hinge.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a32d8ae3d59748623c389d2ef53e36390f9b9e51
--- /dev/null
+++ b/pfam_gap_rates/SMC_hinge.gap.json
@@ -0,0 +1 @@
+{"family": "SMC_hinge", "n_seqs": 2565, "length": 129, "gap_rates": [0.352046783625731, 0.2, 0.13060428849902533, 0.10565302144249512, 0.08031189083820663, 0.04600389863547758, 0.03274853801169591, 0.029239766081871343, 0.025730994152046785, 0.024951267056530214, 0.024171539961013646, 0.023781676413255362, 0.023391812865497075, 0.02183235867446394, 0.7485380116959064, 0.019103313840155945, 0.01871345029239766, 0.01871345029239766, 0.019103313840155945, 0.946588693957115, 0.9352826510721247, 0.01676413255360624, 0.01676413255360624, 0.0152046783625731, 0.01676413255360624, 0.017153996101364522, 0.01442495126705653, 0.01442495126705653, 0.036647173489278755, 0.021052631578947368, 0.08187134502923976, 0.011306042884990253, 0.0101364522417154, 0.009746588693957114, 0.0101364522417154, 0.0101364522417154, 0.01091617933723197, 0.01091617933723197, 0.01091617933723197, 0.011306042884990253, 0.012085769980506823, 0.011695906432748537, 0.011695906432748537, 0.012475633528265107, 0.019883040935672516, 0.029239766081871343, 0.02962962962962963, 0.04327485380116959, 0.03586744639376218, 0.03469785575048733, 0.0202729044834308, 0.019103313840155945, 0.022222222222222223, 0.9458089668615984, 0.1820662768031189, 0.15477582846003898, 0.05185185185185185, 0.03859649122807018, 0.026900584795321637, 0.018323586744639377, 0.016374269005847954, 0.017543859649122806, 0.01676413255360624, 0.01793372319688109, 0.053021442495126705, 0.050682261208576995, 0.050292397660818715, 0.04405458089668616, 0.0354775828460039, 0.03508771929824561, 0.03859649122807018, 0.031578947368421054, 0.030799220272904482, 0.031968810916179334, 0.03274853801169591, 0.041715399610136455, 0.06588693957115009, 0.0783625730994152, 0.20389863547758286, 0.30058479532163745, 0.3730994152046784, 0.5512670565302145, 0.7107212475633529, 0.8846003898635477, 0.9395711500974658, 0.930214424951267, 0.8214424951267056, 0.661598440545809, 0.47914230019493176, 0.04327485380116959, 0.034307992202729044, 0.031968810916179334, 0.030019493177387915, 0.02884990253411306, 0.028460038986354776, 0.028070175438596492, 0.02884990253411306, 0.02962962962962963, 0.031189083820662766, 0.031189083820662766, 0.031189083820662766, 0.031578947368421054, 0.03352826510721248, 0.7883040935672515, 0.058089668615984406, 0.05692007797270955, 0.055360623781676416, 0.05497076023391813, 0.03391812865497076, 0.03859649122807018, 0.03742690058479532, 0.03742690058479532, 0.03781676413255361, 0.03820662768031189, 0.03859649122807018, 0.03859649122807018, 0.03976608187134503, 0.04015594541910331, 0.042105263157894736, 0.04600389863547758, 0.04951267056530215, 0.05730994152046784, 0.06198830409356725, 0.06861598440545809, 0.08031189083820663, 0.09590643274853801, 0.15087719298245614, 0.2378167641325536, 0.7052631578947368], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/SMN.gap.json b/pfam_gap_rates/SMN.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..8ed54b04b469eebb35b25a4d881c8bbda66f6bfd
--- /dev/null
+++ b/pfam_gap_rates/SMN.gap.json
@@ -0,0 +1 @@
+{"family": "SMN", "n_seqs": 313, "length": 263, "gap_rates": [0.9361022364217252, 0.9233226837060703, 0.8849840255591054, 0.8690095846645367, 0.8434504792332268, 0.8434504792332268, 0.8402555910543131, 0.8338658146964856, 0.8306709265175719, 0.8306709265175719, 0.8274760383386581, 0.8242811501597445, 0.8242811501597445, 0.8242811501597445, 0.8242811501597445, 0.8242811501597445, 0.8242811501597445, 0.8242811501597445, 0.8242811501597445, 0.8242811501597445, 0.8274760383386581, 0.8274760383386581, 0.8274760383386581, 0.8242811501597445, 0.8210862619808307, 0.8178913738019169, 0.8242811501597445, 0.8338658146964856, 0.8338658146964856, 0.8274760383386581, 0.8306709265175719, 0.8338658146964856, 0.8146964856230032, 0.8146964856230032, 0.8146964856230032, 0.805111821086262, 0.7955271565495208, 0.7859424920127795, 0.792332268370607, 0.792332268370607, 0.8370607028753994, 0.8242811501597445, 0.7891373801916933, 0.7763578274760383, 0.7571884984025559, 0.7412140575079872, 0.7412140575079872, 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\ No newline at end of file
diff --git a/pfam_gap_rates/SMP.gap.json b/pfam_gap_rates/SMP.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..086586134d6dd32092c2a001738bb6337fd1690a
--- /dev/null
+++ b/pfam_gap_rates/SMP.gap.json
@@ -0,0 +1 @@
+{"family": "SMP", "n_seqs": 319, "length": 60, "gap_rates": [0.2601880877742947, 0.1786833855799373, 0.1786833855799373, 0.16927899686520376, 0.16300940438871472, 0.15987460815047022, 0.15987460815047022, 0.7053291536050157, 0.13166144200626959, 0.34796238244514105, 0.11598746081504702, 0.10658307210031348, 0.10031347962382445, 0.10031347962382445, 0.09717868338557993, 0.0877742946708464, 0.07836990595611286, 0.05642633228840126, 0.04075235109717868, 0.034482758620689655, 0.025078369905956112, 0.0219435736677116, 0.0219435736677116, 0.025078369905956112, 0.025078369905956112, 0.025078369905956112, 0.025078369905956112, 0.01567398119122257, 0.012539184952978056, 0.006269592476489028, 0.009404388714733543, 0.012539184952978056, 0.01567398119122257, 0.012539184952978056, 0.012539184952978056, 0.01567398119122257, 0.018808777429467086, 0.335423197492163, 0.31974921630094044, 0.03134796238244514, 0.047021943573667714, 0.0219435736677116, 0.0219435736677116, 0.02821316614420063, 0.0219435736677116, 0.01567398119122257, 0.01567398119122257, 0.01567398119122257, 0.01567398119122257, 0.01567398119122257, 0.018808777429467086, 0.0219435736677116, 0.03134796238244514, 0.03134796238244514, 0.03134796238244514, 0.050156739811912224, 0.05956112852664577, 0.07836990595611286, 0.27586206896551724, 0.8714733542319749], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/SNF5.gap.json b/pfam_gap_rates/SNF5.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..8e8c9a0e6e2f7c22e779e12e2675b60216151407
--- /dev/null
+++ b/pfam_gap_rates/SNF5.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/SPT_ssu-like.gap.json b/pfam_gap_rates/SPT_ssu-like.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..604170be7a9d45ab89dd2e9002f24994d8ebf07b
--- /dev/null
+++ b/pfam_gap_rates/SPT_ssu-like.gap.json
@@ -0,0 +1 @@
+{"family": "SPT_ssu-like", "n_seqs": 245, "length": 54, "gap_rates": [0.7959183673469388, 0.3551020408163265, 0.23265306122448978, 0.12244897959183673, 0.09795918367346938, 0.08163265306122448, 0.061224489795918366, 0.053061224489795916, 0.0326530612244898, 0.02040816326530612, 0.02040816326530612, 0.02040816326530612, 0.0163265306122449, 0.012244897959183673, 0.00816326530612245, 0.00816326530612245, 0.00816326530612245, 0.00816326530612245, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.004081632653061225, 0.004081632653061225, 0.0163265306122449, 0.0163265306122449, 0.02040816326530612, 0.044897959183673466, 0.0326530612244898, 0.036734693877551024, 0.04081632653061224, 0.04081632653061224, 0.04081632653061224, 0.044897959183673466, 0.05714285714285714, 0.061224489795918366, 0.07755102040816327, 0.09795918367346938, 0.12244897959183673, 0.16326530612244897, 0.2, 0.22857142857142856, 0.2530612244897959, 0.27346938775510204, 0.33877551020408164, 0.4163265306122449, 0.5795918367346938, 0.7959183673469388], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/SQHop_cyclase_N.gap.json b/pfam_gap_rates/SQHop_cyclase_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..be2546a7788146a1555f30b72897268c3a2224db
--- /dev/null
+++ b/pfam_gap_rates/SQHop_cyclase_N.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/SRPRB.gap.json b/pfam_gap_rates/SRPRB.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..894e978aaadd7eb0d31791f0a7b6ff664d809786
--- /dev/null
+++ b/pfam_gap_rates/SRPRB.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/SSB.gap.json b/pfam_gap_rates/SSB.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..4787a20d72e52e0ee32c15639040ecdcc05d88c5
--- /dev/null
+++ b/pfam_gap_rates/SSB.gap.json
@@ -0,0 +1 @@
+{"family": "SSB", "n_seqs": 4241, "length": 110, "gap_rates": [0.3600565904267861, 0.20136760198066495, 0.1440697948597029, 0.07168120726243811, 0.05069559066257958, 0.036783777410987976, 0.028295213393067672, 0.024758311718934212, 0.024758311718934212, 0.02381513793916529, 0.02334355104928083, 0.02240037726951191, 0.02782362650318321, 0.02334355104928083, 0.02287196415939637, 0.020749823154916292, 0.021457203489742987, 0.01957085593020514, 0.01957085593020514, 0.02027823626503183, 0.9162933270455081, 0.05328931855694412, 0.021457203489742987, 0.01980664937514737, 0.01603395425607168, 0.014854987031360529, 0.018391888705493988, 0.012261259136995991, 0.01202546569205376, 0.01178967224711153, 0.0115538788021693, 0.011082291912284839, 0.010846498467342609, 0.010846498467342609, 0.010610705022400376, 0.19240745107286017, 0.17825984437632633, 0.17778825748644186, 0.18533364772459326, 0.8396604574392832, 0.947889648667767, 0.6540910162697477, 0.39000235793444943, 0.2987502947418062, 0.11695354869134639, 0.08087715161518509, 0.017448714925725063, 0.009667531242631455, 0.009195944352746994, 0.009195944352746994, 0.008724357462862532, 0.008960150907804764, 0.009195944352746994, 0.008724357462862532, 0.008724357462862532, 0.008724357462862532, 0.00825277057297807, 0.00825277057297807, 0.008960150907804764, 0.008960150907804764, 0.008960150907804764, 0.8684272577222353, 0.025229898608818673, 0.01862768215043622, 0.012968639471822684, 0.012497052581938221, 0.01202546569205376, 0.009903324687573685, 0.01178967224711153, 0.06955906625795803, 0.009903324687573685, 0.008724357462862532, 0.009431737797689225, 0.010139118132515916, 0.009903324687573685, 0.010374911577458146, 0.010139118132515916, 0.009195944352746994, 0.009195944352746994, 0.009431737797689225, 0.009431737797689225, 0.009431737797689225, 0.009431737797689225, 0.009903324687573685, 0.0115538788021693, 0.01579816081112945, 0.0200424428200896, 0.03018156095260552, 0.028766800282952133, 0.031360528177316674, 0.032303701957085595, 0.1256779061542089, 0.9155859467106815, 0.04527234142890828, 0.06507899080405564, 0.05258193822211742, 0.050931384107521814, 0.05116717755246404, 0.052346144777175196, 0.05376090544682858, 0.05682622023107758, 0.05965574157038434, 0.06272105635463335, 0.06649375147370903, 0.07757604338599387, 0.14006130629568497, 0.16434803112473473, 0.291440697948597, 0.41924074510728604, 0.6786135345437397], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/SSPI.gap.json b/pfam_gap_rates/SSPI.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..355232e6ea10575880e9baf12f76d8d89b81f69c
--- /dev/null
+++ b/pfam_gap_rates/SSPI.gap.json
@@ -0,0 +1 @@
+{"family": "SSPI", "n_seqs": 119, "length": 65, "gap_rates": [0.05042016806722689, 0.03361344537815126, 0.008403361344537815, 0.008403361344537815, 0.008403361344537815, 0.008403361344537815, 0.008403361344537815, 0.008403361344537815, 0.008403361344537815, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.21008403361344538, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.008403361344537815, 0.008403361344537815, 0.0, 0.0, 0.0, 0.0, 0.0, 0.008403361344537815, 0.008403361344537815, 0.008403361344537815, 0.008403361344537815, 0.01680672268907563, 0.058823529411764705, 0.37815126050420167], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/STAR_dimer.gap.json b/pfam_gap_rates/STAR_dimer.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e5c5cac2e508a74ecfccec3bff20def540f6b824
--- /dev/null
+++ b/pfam_gap_rates/STAR_dimer.gap.json
@@ -0,0 +1 @@
+{"family": "STAR_dimer", "n_seqs": 223, "length": 59, "gap_rates": [0.8834080717488789, 0.5919282511210763, 0.5246636771300448, 0.45739910313901344, 0.3183856502242152, 0.2062780269058296, 0.03139013452914798, 0.02242152466367713, 0.017937219730941704, 0.017937219730941704, 0.017937219730941704, 0.017937219730941704, 0.013452914798206279, 0.013452914798206279, 0.013452914798206279, 0.013452914798206279, 0.013452914798206279, 0.013452914798206279, 0.013452914798206279, 0.013452914798206279, 0.013452914798206279, 0.013452914798206279, 0.008968609865470852, 0.004484304932735426, 0.9192825112107623, 0.9417040358744395, 0.9147982062780269, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.026905829596412557, 0.03139013452914798, 0.03139013452914798, 0.03587443946188341, 0.04035874439461883, 0.07174887892376682, 0.10762331838565023, 0.23318385650224216, 0.24663677130044842, 0.32286995515695066, 0.3273542600896861, 0.9327354260089686, 0.9372197309417041, 0.9237668161434978, 0.37668161434977576, 0.39461883408071746, 0.4349775784753363, 0.4618834080717489, 0.6591928251121076, 0.7757847533632287, 0.8834080717488789], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/STAT_bind.gap.json b/pfam_gap_rates/STAT_bind.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e08bb1679464da9274fe9fff58d63ad657a181dd
--- /dev/null
+++ b/pfam_gap_rates/STAT_bind.gap.json
@@ -0,0 +1 @@
+{"family": "STAT_bind", "n_seqs": 230, "length": 292, "gap_rates": [0.3217391304347826, 0.26956521739130435, 0.26956521739130435, 0.26956521739130435, 0.26956521739130435, 0.26521739130434785, 0.26521739130434785, 0.7391304347826086, 0.7391304347826086, 0.7391304347826086, 0.7565217391304347, 0.7391304347826086, 0.7391304347826086, 0.7391304347826086, 0.7391304347826086, 0.26521739130434785, 0.26521739130434785, 0.26521739130434785, 0.26521739130434785, 0.26521739130434785, 0.26956521739130435, 0.26521739130434785, 0.2608695652173913, 0.2565217391304348, 0.2565217391304348, 0.2565217391304348, 0.2565217391304348, 0.2565217391304348, 0.24782608695652175, 0.2217391304347826, 0.21739130434782608, 0.2217391304347826, 0.2217391304347826, 0.508695652173913, 0.508695652173913, 0.21739130434782608, 0.21739130434782608, 0.21739130434782608, 0.21739130434782608, 0.23478260869565218, 0.8913043478260869, 0.8434782608695652, 0.21739130434782608, 0.20869565217391303, 0.20869565217391303, 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\ No newline at end of file
diff --git a/pfam_gap_rates/SUFU.gap.json b/pfam_gap_rates/SUFU.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..bd4aca97d53982a9a30525864cf0108866dbb6ec
--- /dev/null
+++ b/pfam_gap_rates/SUFU.gap.json
@@ -0,0 +1 @@
+{"family": "SUFU", "n_seqs": 422, "length": 204, "gap_rates": [0.6824644549763034, 0.5379146919431279, 0.41232227488151657, 0.33175355450236965, 0.2772511848341232, 0.2677725118483412, 0.25118483412322273, 0.23696682464454977, 0.20853080568720378, 0.1990521327014218, 0.7962085308056872, 0.8625592417061612, 0.9123222748815166, 0.8625592417061612, 0.8436018957345972, 0.7606635071090048, 0.2014218009478673, 0.25118483412322273, 0.5165876777251185, 0.24407582938388625, 0.1895734597156398, 0.7772511848341233, 0.13744075829383887, 0.13270142180094788, 0.12796208530805686, 0.12322274881516587, 0.11611374407582939, 0.11137440758293839, 0.10426540284360189, 0.0995260663507109, 0.0995260663507109, 0.0995260663507109, 0.0995260663507109, 0.0995260663507109, 0.0995260663507109, 0.0995260663507109, 0.0995260663507109, 0.0995260663507109, 0.1018957345971564, 0.8815165876777251, 0.933649289099526, 0.8767772511848341, 0.11374407582938388, 0.20616113744075829, 0.21800947867298578, 0.23696682464454977, 0.23696682464454977, 0.3767772511848341, 0.34360189573459715, 0.9454976303317536, 0.9004739336492891, 0.5450236966824644, 0.5260663507109005, 0.4075829383886256, 0.22274881516587677, 0.11611374407582939, 0.0995260663507109, 0.09004739336492891, 0.09004739336492891, 0.09004739336492891, 0.08530805687203792, 0.08767772511848342, 0.08767772511848342, 0.08767772511848342, 0.08767772511848342, 0.08767772511848342, 0.12322274881516587, 0.24170616113744076, 0.6848341232227488, 0.8104265402843602, 0.7345971563981043, 0.6327014218009479, 0.3033175355450237, 0.33886255924170616, 0.37203791469194314, 0.4004739336492891, 0.4052132701421801, 0.24644549763033174, 0.9075829383886256, 0.8459715639810427, 0.3578199052132701, 0.3293838862559242, 0.31990521327014215, 0.3104265402843602, 0.2938388625592417, 0.23222748815165878, 0.21800947867298578, 0.2156398104265403, 0.08056872037914692, 0.07582938388625593, 0.07582938388625593, 0.07345971563981042, 0.07109004739336493, 0.07109004739336493, 0.07345971563981042, 0.07582938388625593, 0.07345971563981042, 0.07345971563981042, 0.07109004739336493, 0.5071090047393365, 0.36018957345971564, 0.07109004739336493, 0.05924170616113744, 0.25829383886255924, 0.05924170616113744, 0.05924170616113744, 0.05687203791469194, 0.05687203791469194, 0.054502369668246446, 0.05687203791469194, 0.061611374407582936, 0.24881516587677724, 0.25118483412322273, 0.23933649289099526, 0.19194312796208532, 0.6232227488151659, 0.25118483412322273, 0.15876777251184834, 0.1066350710900474, 0.23222748815165878, 0.2132701421800948, 0.11611374407582939, 0.7559241706161137, 0.07345971563981042, 0.06872037914691943, 0.05924170616113744, 0.05687203791469194, 0.05687203791469194, 0.05687203791469194, 0.054502369668246446, 0.052132701421800945, 0.052132701421800945, 0.05687203791469194, 0.054502369668246446, 0.4431279620853081, 0.5876777251184834, 0.9454976303317536, 0.8886255924170616, 0.518957345971564, 0.42417061611374407, 0.11374407582938388, 0.07345971563981042, 0.061611374407582936, 0.061611374407582936, 0.12322274881516587, 0.05924170616113744, 0.04976303317535545, 0.054502369668246446, 0.052132701421800945, 0.13270142180094788, 0.054502369668246446, 0.05687203791469194, 0.052132701421800945, 0.5853080568720379, 0.9218009478672986, 0.04265402843601896, 0.04265402843601896, 0.04265402843601896, 0.04265402843601896, 0.04265402843601896, 0.04265402843601896, 0.045023696682464455, 0.045023696682464455, 0.045023696682464455, 0.045023696682464455, 0.04739336492890995, 0.04739336492890995, 0.04976303317535545, 0.04976303317535545, 0.04976303317535545, 0.04976303317535545, 0.04976303317535545, 0.052132701421800945, 0.054502369668246446, 0.05687203791469194, 0.9004739336492891, 0.8886255924170616, 0.054502369668246446, 0.054502369668246446, 0.054502369668246446, 0.05687203791469194, 0.05687203791469194, 0.05687203791469194, 0.3080568720379147, 0.1018957345971564, 0.08530805687203792, 0.0924170616113744, 0.2014218009478673, 0.8412322274881516, 0.8744075829383886, 0.8554502369668247, 0.8175355450236966, 0.17772511848341233, 0.14691943127962084, 0.14218009478672985, 0.12322274881516587, 0.12085308056872038, 0.13033175355450238, 0.14928909952606634, 0.16350710900473933, 0.17298578199052134, 0.1872037914691943, 0.1966824644549763, 0.7654028436018957], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/SUZ-C.gap.json b/pfam_gap_rates/SUZ-C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..6df490f43f39b30c5453291bfea604d0a1f02c45
--- /dev/null
+++ b/pfam_gap_rates/SUZ-C.gap.json
@@ -0,0 +1 @@
+{"family": "SUZ-C", "n_seqs": 103, "length": 33, "gap_rates": [0.6699029126213593, 0.5631067961165048, 0.3592233009708738, 0.30097087378640774, 0.2621359223300971, 0.24271844660194175, 0.39805825242718446, 0.22330097087378642, 0.18446601941747573, 0.1553398058252427, 0.11650485436893204, 0.10679611650485436, 0.07766990291262135, 0.04854368932038835, 0.02912621359223301, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.941747572815534, 0.0, 0.009708737864077669, 0.019417475728155338, 0.019417475728155338, 0.02912621359223301, 0.13592233009708737, 0.6310679611650486, 0.7864077669902912], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/SYF2.gap.json b/pfam_gap_rates/SYF2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..3a323f2270d6efbfb7b0b30ee3f36e893ad5b16f
--- /dev/null
+++ b/pfam_gap_rates/SYF2.gap.json
@@ -0,0 +1 @@
+{"family": "SYF2", "n_seqs": 325, "length": 188, "gap_rates": [0.6923076923076923, 0.2923076923076923, 0.24923076923076923, 0.21846153846153846, 0.2, 0.19076923076923077, 0.18153846153846154, 0.17846153846153845, 0.16923076923076924, 0.16615384615384615, 0.15384615384615385, 0.1476923076923077, 0.14461538461538462, 0.13538461538461538, 0.11692307692307692, 0.11384615384615385, 0.09846153846153846, 0.09846153846153846, 0.09230769230769231, 0.09538461538461539, 0.09846153846153846, 0.08615384615384615, 0.07692307692307693, 0.07384615384615385, 0.08, 0.07692307692307693, 0.07692307692307693, 0.08307692307692308, 0.09846153846153846, 0.7169230769230769, 0.47384615384615386, 0.3261538461538461, 0.17846153846153845, 0.08, 0.07692307692307693, 0.07384615384615385, 0.08923076923076922, 0.08, 0.06769230769230769, 0.7846153846153846, 0.06153846153846154, 0.06153846153846154, 0.06153846153846154, 0.06153846153846154, 0.06153846153846154, 0.06461538461538462, 0.06153846153846154, 0.06153846153846154, 0.06153846153846154, 0.06153846153846154, 0.06153846153846154, 0.05846153846153846, 0.05846153846153846, 0.05846153846153846, 0.06461538461538462, 0.06461538461538462, 0.06153846153846154, 0.06153846153846154, 0.05846153846153846, 0.9476923076923077, 0.8892307692307693, 0.05846153846153846, 0.06461538461538462, 0.06153846153846154, 0.05846153846153846, 0.06769230769230769, 0.06461538461538462, 0.06461538461538462, 0.06153846153846154, 0.06153846153846154, 0.055384615384615386, 0.05846153846153846, 0.06769230769230769, 0.07692307692307693, 0.07076923076923076, 0.6215384615384615, 0.6092307692307692, 0.6738461538461539, 0.6738461538461539, 0.6861538461538461, 0.6953846153846154, 0.6984615384615385, 0.7230769230769231, 0.7415384615384616, 0.7569230769230769, 0.9415384615384615, 0.9415384615384615, 0.9446153846153846, 0.9415384615384615, 0.9384615384615385, 0.7446153846153846, 0.7415384615384616, 0.72, 0.6984615384615385, 0.6892307692307692, 0.683076923076923, 0.6738461538461539, 0.6738461538461539, 0.6061538461538462, 0.6030769230769231, 0.5969230769230769, 0.6, 0.5846153846153846, 0.6584615384615384, 0.48615384615384616, 0.25846153846153846, 0.12, 0.12, 0.1076923076923077, 0.09538461538461539, 0.10153846153846154, 0.15076923076923077, 0.16923076923076924, 0.1723076923076923, 0.15692307692307692, 0.12, 0.12307692307692308, 0.7815384615384615, 0.10153846153846154, 0.07692307692307693, 0.06153846153846154, 0.052307692307692305, 0.052307692307692305, 0.04923076923076923, 0.046153846153846156, 0.046153846153846156, 0.046153846153846156, 0.046153846153846156, 0.046153846153846156, 0.04923076923076923, 0.04923076923076923, 0.04923076923076923, 0.04923076923076923, 0.04923076923076923, 0.046153846153846156, 0.046153846153846156, 0.04923076923076923, 0.07384615384615385, 0.07076923076923076, 0.046153846153846156, 0.046153846153846156, 0.05846153846153846, 0.06153846153846154, 0.05846153846153846, 0.055384615384615386, 0.046153846153846156, 0.043076923076923075, 0.052307692307692305, 0.055384615384615386, 0.05846153846153846, 0.12923076923076923, 0.8615384615384616, 0.8, 0.055384615384615386, 0.052307692307692305, 0.04923076923076923, 0.04923076923076923, 0.04923076923076923, 0.04923076923076923, 0.04923076923076923, 0.04923076923076923, 0.052307692307692305, 0.052307692307692305, 0.052307692307692305, 0.052307692307692305, 0.052307692307692305, 0.055384615384615386, 0.055384615384615386, 0.055384615384615386, 0.055384615384615386, 0.055384615384615386, 0.055384615384615386, 0.06153846153846154, 0.06461538461538462, 0.07692307692307693, 0.08, 0.08307692307692308, 0.09230769230769231, 0.10461538461538461, 0.10153846153846154, 0.10461538461538461, 0.1076923076923077, 0.1076923076923077, 0.1076923076923077, 0.1076923076923077, 0.1076923076923077, 0.11076923076923077, 0.11076923076923077], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/S_100.gap.json b/pfam_gap_rates/S_100.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..db157008249f65036fe115b0fdfa39e92e8c519b
--- /dev/null
+++ b/pfam_gap_rates/S_100.gap.json
@@ -0,0 +1 @@
+{"family": "S_100", "n_seqs": 336, "length": 43, "gap_rates": [0.19940476190476192, 0.11011904761904762, 0.06845238095238096, 0.0625, 0.047619047619047616, 0.047619047619047616, 0.041666666666666664, 0.03571428571428571, 0.026785714285714284, 0.011904761904761904, 0.008928571428571428, 0.005952380952380952, 0.002976190476190476, 0.0, 0.0, 0.0, 0.02976190476190476, 0.023809523809523808, 0.023809523809523808, 0.03571428571428571, 0.11011904761904762, 0.10416666666666667, 0.0744047619047619, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.008928571428571428, 0.011904761904761904, 0.06845238095238096, 0.08928571428571429, 0.09523809523809523, 0.13095238095238096, 0.5178571428571429], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Sas10.gap.json b/pfam_gap_rates/Sas10.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..4f7c9bdeb4feb7dff6f8eccb782bf360b5f7b5cb
--- /dev/null
+++ b/pfam_gap_rates/Sas10.gap.json
@@ -0,0 +1 @@
+{"family": "Sas10", "n_seqs": 318, "length": 79, "gap_rates": [0.8427672955974843, 0.1792452830188679, 0.07232704402515723, 0.012578616352201259, 0.012578616352201259, 0.012578616352201259, 0.012578616352201259, 0.012578616352201259, 0.009433962264150943, 0.009433962264150943, 0.009433962264150943, 0.009433962264150943, 0.009433962264150943, 0.009433962264150943, 0.009433962264150943, 0.009433962264150943, 0.006289308176100629, 0.006289308176100629, 0.006289308176100629, 0.006289308176100629, 0.006289308176100629, 0.006289308176100629, 0.009433962264150943, 0.009433962264150943, 0.006289308176100629, 0.006289308176100629, 0.006289308176100629, 0.006289308176100629, 0.0031446540880503146, 0.0031446540880503146, 0.0031446540880503146, 0.0031446540880503146, 0.0031446540880503146, 0.0031446540880503146, 0.0031446540880503146, 0.012578616352201259, 0.012578616352201259, 0.012578616352201259, 0.012578616352201259, 0.012578616352201259, 0.012578616352201259, 0.012578616352201259, 0.012578616352201259, 0.012578616352201259, 0.012578616352201259, 0.012578616352201259, 0.012578616352201259, 0.015723270440251572, 0.015723270440251572, 0.015723270440251572, 0.018867924528301886, 0.6949685534591195, 0.9150943396226415, 0.89937106918239, 0.5660377358490566, 0.02830188679245283, 0.031446540880503145, 0.03773584905660377, 0.025157232704402517, 0.940251572327044, 0.025157232704402517, 0.025157232704402517, 0.025157232704402517, 0.031446540880503145, 0.07232704402515723, 0.040880503144654086, 0.031446540880503145, 0.03773584905660377, 0.031446540880503145, 0.0880503144654088, 0.03773584905660377, 0.050314465408805034, 0.04716981132075472, 0.050314465408805034, 0.050314465408805034, 0.0660377358490566, 0.06918238993710692, 0.09748427672955975, 0.13522012578616352], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Sdh5.gap.json b/pfam_gap_rates/Sdh5.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..8f6ef0ccf6e2adb9016965fcfcab60cbbb54fff2
--- /dev/null
+++ b/pfam_gap_rates/Sdh5.gap.json
@@ -0,0 +1 @@
+{"family": "Sdh5", "n_seqs": 801, "length": 75, "gap_rates": [0.47191011235955055, 0.1136079900124844, 0.0686641697877653, 0.05368289637952559, 0.05118601747815231, 0.04369538077403246, 0.04119850187265917, 0.039950062421972535, 0.37203495630461925, 0.04244694132334582, 0.03870162297128589, 0.03745318352059925, 0.016229712858926344, 0.016229712858926344, 0.017478152309612985, 0.0149812734082397, 0.012484394506866416, 0.012484394506866416, 0.011235955056179775, 0.009987515605493134, 0.00749063670411985, 0.006242197253433208, 0.004993757802746567, 0.006242197253433208, 0.006242197253433208, 0.008739076154806492, 0.008739076154806492, 0.008739076154806492, 0.008739076154806492, 0.009987515605493134, 0.008739076154806492, 0.009987515605493134, 0.009987515605493134, 0.008739076154806492, 0.00749063670411985, 0.00749063670411985, 0.00749063670411985, 0.008739076154806492, 0.008739076154806492, 0.008739076154806492, 0.008739076154806492, 0.008739076154806492, 0.008739076154806492, 0.008739076154806492, 0.008739076154806492, 0.011235955056179775, 0.885143570536829, 0.8751560549313359, 0.012484394506866416, 0.012484394506866416, 0.012484394506866416, 0.012484394506866416, 0.01373283395755306, 0.01373283395755306, 0.01373283395755306, 0.01373283395755306, 0.01373283395755306, 0.01373283395755306, 0.016229712858926344, 0.38701622971285893, 0.03870162297128589, 0.046192259675405745, 0.05867665418227216, 0.07615480649188515, 0.08364544319600499, 0.10611735330836454, 0.13108614232209737, 0.1822721598002497, 0.5255930087390761, 0.26841448189762795, 0.25218476903870163, 0.2721598002496879, 0.3146067415730337, 0.383270911360799, 0.533083645443196], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Sds3.gap.json b/pfam_gap_rates/Sds3.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..8b8543fd69f8cb00989ee73320f1e58fe1b198eb
--- /dev/null
+++ b/pfam_gap_rates/Sds3.gap.json
@@ -0,0 +1 @@
+{"family": "Sds3", "n_seqs": 462, "length": 357, "gap_rates": [0.8398268398268398, 0.5238095238095238, 0.44372294372294374, 0.41125541125541126, 0.37662337662337664, 0.3268398268398268, 0.3203463203463203, 0.3116883116883117, 0.2792207792207792, 0.2597402597402597, 0.2532467532467532, 0.2532467532467532, 0.24458874458874458, 0.21428571428571427, 0.20562770562770563, 0.20346320346320346, 0.19264069264069264, 0.16883116883116883, 0.13852813852813853, 0.12337662337662338, 0.10606060606060606, 0.08874458874458875, 0.07575757575757576, 0.06493506493506493, 0.06277056277056277, 0.06277056277056277, 0.06277056277056277, 0.06060606060606061, 0.05194805194805195, 0.05194805194805195, 0.049783549783549784, 0.049783549783549784, 0.047619047619047616, 0.047619047619047616, 0.047619047619047616, 0.047619047619047616, 0.04329004329004329, 0.0367965367965368, 0.7835497835497836, 0.8593073593073594, 0.8593073593073594, 0.8593073593073594, 0.8593073593073594, 0.8593073593073594, 0.8593073593073594, 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\ No newline at end of file
diff --git a/pfam_gap_rates/Sec16.gap.json b/pfam_gap_rates/Sec16.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d3c853472723cee2167beef2a7eab37cf0ed21a7
--- /dev/null
+++ b/pfam_gap_rates/Sec16.gap.json
@@ -0,0 +1 @@
+{"family": "Sec16", "n_seqs": 246, "length": 162, "gap_rates": [0.35772357723577236, 0.23983739837398374, 0.1951219512195122, 0.14227642276422764, 0.13414634146341464, 0.13414634146341464, 0.13008130081300814, 0.13008130081300814, 0.12601626016260162, 0.13008130081300814, 0.13414634146341464, 0.13008130081300814, 0.13008130081300814, 0.13008130081300814, 0.13008130081300814, 0.25609756097560976, 0.36585365853658536, 0.17073170731707318, 0.17073170731707318, 0.1991869918699187, 0.2032520325203252, 0.1991869918699187, 0.1991869918699187, 0.2073170731707317, 0.9471544715447154, 0.573170731707317, 0.4349593495934959, 0.4105691056910569, 0.3780487804878049, 0.3130081300813008, 0.2926829268292683, 0.2682926829268293, 0.17073170731707318, 0.15447154471544716, 0.14227642276422764, 0.10569105691056911, 0.08130081300813008, 0.07723577235772358, 0.04878048780487805, 0.044715447154471545, 0.04065040650406504, 0.04065040650406504, 0.04065040650406504, 0.04065040650406504, 0.032520325203252036, 0.036585365853658534, 0.036585365853658534, 0.036585365853658534, 0.032520325203252036, 0.032520325203252036, 0.06910569105691057, 0.052845528455284556, 0.07723577235772358, 0.08130081300813008, 0.08943089430894309, 0.08130081300813008, 0.036585365853658534, 0.491869918699187, 0.7520325203252033, 0.7642276422764228, 0.8048780487804879, 0.8089430894308943, 0.8089430894308943, 0.8211382113821138, 0.8333333333333334, 0.9349593495934959, 0.8252032520325203, 0.8130081300813008, 0.8089430894308943, 0.8048780487804879, 0.7926829268292683, 0.7560975609756098, 0.508130081300813, 0.4796747967479675, 0.016260162601626018, 0.016260162601626018, 0.02032520325203252, 0.02032520325203252, 0.016260162601626018, 0.8048780487804879, 0.8089430894308943, 0.8577235772357723, 0.8902439024390244, 0.8902439024390244, 0.8983739837398373, 0.8983739837398373, 0.8983739837398373, 0.9065040650406504, 0.8983739837398373, 0.8983739837398373, 0.8983739837398373, 0.8902439024390244, 0.8699186991869918, 0.8130081300813008, 0.8089430894308943, 0.7845528455284553, 0.3008130081300813, 0.036585365853658534, 0.016260162601626018, 0.016260162601626018, 0.016260162601626018, 0.016260162601626018, 0.016260162601626018, 0.016260162601626018, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0040650406504065045, 0.0040650406504065045, 0.0040650406504065045, 0.0040650406504065045, 0.0040650406504065045, 0.032520325203252036, 0.024390243902439025, 0.024390243902439025, 0.036585365853658534, 0.044715447154471545, 0.8577235772357723, 0.926829268292683, 0.943089430894309, 0.9471544715447154, 0.943089430894309, 0.9390243902439024, 0.9186991869918699, 0.7235772357723578, 0.6707317073170732, 0.6707317073170732, 0.5975609756097561, 0.5853658536585366, 0.516260162601626, 0.508130081300813, 0.483739837398374, 0.4796747967479675, 0.4634146341463415, 0.25203252032520324, 0.13008130081300814, 0.08130081300813008, 0.07317073170731707, 0.056910569105691054, 0.056910569105691054, 0.052845528455284556, 0.052845528455284556, 0.04878048780487805, 0.052845528455284556, 0.052845528455284556, 0.052845528455284556, 0.052845528455284556, 0.052845528455284556, 0.052845528455284556, 0.056910569105691054, 0.06097560975609756, 0.06504065040650407, 0.07723577235772358, 0.08130081300813008, 0.08536585365853659, 0.11788617886178862], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Sec20.gap.json b/pfam_gap_rates/Sec20.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..3d9389445ddd79f64adeec2b4ff3c1ad62f3b5fa
--- /dev/null
+++ b/pfam_gap_rates/Sec20.gap.json
@@ -0,0 +1 @@
+{"family": "Sec20", "n_seqs": 361, "length": 92, "gap_rates": [0.8808864265927978, 0.6620498614958449, 0.3573407202216066, 0.31024930747922436, 0.24653739612188366, 0.23545706371191136, 0.22160664819944598, 0.0886426592797784, 0.05263157894736842, 0.04155124653739612, 0.038781163434903045, 0.036011080332409975, 0.0332409972299169, 0.0332409972299169, 0.0332409972299169, 0.0332409972299169, 0.024930747922437674, 0.024930747922437674, 0.024930747922437674, 0.024930747922437674, 0.024930747922437674, 0.0221606648199446, 0.0221606648199446, 0.0221606648199446, 0.0221606648199446, 0.0221606648199446, 0.019390581717451522, 0.0221606648199446, 0.0221606648199446, 0.0221606648199446, 0.0221606648199446, 0.013850415512465374, 0.013850415512465374, 0.00554016620498615, 0.00554016620498615, 0.00554016620498615, 0.008310249307479225, 0.002770083102493075, 0.002770083102493075, 0.002770083102493075, 0.002770083102493075, 0.00554016620498615, 0.002770083102493075, 0.002770083102493075, 0.002770083102493075, 0.002770083102493075, 0.002770083102493075, 0.002770083102493075, 0.002770083102493075, 0.002770083102493075, 0.002770083102493075, 0.002770083102493075, 0.002770083102493075, 0.002770083102493075, 0.002770083102493075, 0.002770083102493075, 0.002770083102493075, 0.002770083102493075, 0.00554016620498615, 0.00554016620498615, 0.00554016620498615, 0.00554016620498615, 0.008310249307479225, 0.0110803324099723, 0.008310249307479225, 0.008310249307479225, 0.008310249307479225, 0.0110803324099723, 0.008310249307479225, 0.008310249307479225, 0.008310249307479225, 0.008310249307479225, 0.0332409972299169, 0.04709141274238227, 0.027700831024930747, 0.030470914127423823, 0.0110803324099723, 0.05263157894736842, 0.0110803324099723, 0.013850415512465374, 0.01662049861495845, 0.0221606648199446, 0.036011080332409975, 0.0443213296398892, 0.08310249307479224, 0.11080332409972299, 0.13019390581717452, 0.13019390581717452, 0.1634349030470914, 0.18559556786703602, 0.2188365650969529, 0.3462603878116344], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Sec23_helical.gap.json b/pfam_gap_rates/Sec23_helical.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..8df57a842f497f481cc867240371e28c11bd611f
--- /dev/null
+++ b/pfam_gap_rates/Sec23_helical.gap.json
@@ -0,0 +1 @@
+{"family": "Sec23_helical", "n_seqs": 1278, "length": 110, "gap_rates": [0.16353677621283255, 0.09702660406885759, 0.054773082942097026, 0.046948356807511735, 0.04616588419405321, 0.04381846635367762, 0.04303599374021909, 0.0406885758998435, 0.03755868544600939, 0.03599374021909233, 0.035211267605633804, 0.03442879499217527, 0.033646322378716745, 0.033646322378716745, 0.03286384976525822, 0.03129890453834116, 0.03129890453834116, 0.032081377151799685, 0.9436619718309859, 0.8904538341158059, 0.03834115805946792, 0.050078247261345854, 0.03129890453834116, 0.025039123630672927, 0.023474178403755867, 0.02112676056338028, 0.02034428794992175, 0.01643192488262911, 0.01486697965571205, 0.01486697965571205, 0.01486697965571205, 0.014084507042253521, 0.014084507042253521, 0.014084507042253521, 0.013302034428794992, 0.013302034428794992, 0.013302034428794992, 0.011737089201877934, 0.010954616588419406, 0.010172143974960876, 0.013302034428794992, 0.01486697965571205, 0.01486697965571205, 0.01486697965571205, 0.01486697965571205, 0.01486697965571205, 0.02112676056338028, 0.025039123630672927, 0.46087636932707354, 0.8528951486697965, 0.9397496087636933, 0.9475743348982786, 0.9209702660406885, 0.7480438184663537, 0.418622848200313, 0.08528951486697965, 0.05712050078247261, 0.051643192488262914, 0.017996870109546165, 0.012519561815336464, 0.009389671361502348, 0.008607198748043818, 0.00782472613458529, 0.004694835680751174, 0.003912363067292645, 0.003912363067292645, 0.003912363067292645, 0.003912363067292645, 0.003912363067292645, 0.003912363067292645, 0.002347417840375587, 0.003912363067292645, 0.003912363067292645, 0.003912363067292645, 0.003912363067292645, 0.003912363067292645, 0.003912363067292645, 0.003912363067292645, 0.003912363067292645, 0.005477308294209703, 0.3599374021909233, 0.012519561815336464, 0.01564945226917058, 0.033646322378716745, 0.568075117370892, 0.08763693270735524, 0.09546165884194054, 0.028951486697965573, 0.028951486697965573, 0.032081377151799685, 0.4593114241001565, 0.03129890453834116, 0.032081377151799685, 0.032081377151799685, 0.03286384976525822, 0.033646322378716745, 0.033646322378716745, 0.03442879499217527, 0.03599374021909233, 0.036776212832550864, 0.03755868544600939, 0.03990610328638498, 0.0406885758998435, 0.0406885758998435, 0.04538341158059468, 0.0539906103286385, 0.09076682316118936, 0.16666666666666666, 0.22613458528951486, 0.42331768388106417], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/SecG.gap.json b/pfam_gap_rates/SecG.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..9009e04bd35653ac89ce3731ce4d0db27d51e4cf
--- /dev/null
+++ b/pfam_gap_rates/SecG.gap.json
@@ -0,0 +1 @@
+{"family": "SecG", "n_seqs": 2100, "length": 76, "gap_rates": [0.40904761904761905, 0.13238095238095238, 0.0761904761904762, 0.0380952380952381, 0.025714285714285714, 0.022857142857142857, 0.019523809523809523, 0.017619047619047618, 0.016666666666666666, 0.015714285714285715, 0.015714285714285715, 0.013333333333333334, 0.009523809523809525, 0.009523809523809525, 0.008095238095238095, 0.008095238095238095, 0.008095238095238095, 0.004285714285714286, 0.0019047619047619048, 0.0014285714285714286, 0.09761904761904762, 0.008571428571428572, 0.0009523809523809524, 0.0419047619047619, 0.005714285714285714, 0.0014285714285714286, 0.0009523809523809524, 0.014761904761904763, 0.18047619047619048, 0.06761904761904762, 0.014285714285714285, 0.6823809523809524, 0.009523809523809525, 0.018095238095238095, 0.19952380952380952, 0.810952380952381, 0.45904761904761904, 0.38571428571428573, 0.17857142857142858, 0.0919047619047619, 0.008571428571428572, 0.0038095238095238095, 0.7071428571428572, 0.9114285714285715, 0.7428571428571429, 0.5566666666666666, 0.023809523809523808, 0.012380952380952381, 0.002380952380952381, 0.0019047619047619048, 0.0019047619047619048, 0.0019047619047619048, 0.0019047619047619048, 0.0019047619047619048, 0.0019047619047619048, 0.0019047619047619048, 0.0019047619047619048, 0.0019047619047619048, 0.0019047619047619048, 0.002380952380952381, 0.002380952380952381, 0.002857142857142857, 0.002857142857142857, 0.002857142857142857, 0.002857142857142857, 0.002857142857142857, 0.002857142857142857, 0.002857142857142857, 0.002857142857142857, 0.0038095238095238095, 0.004761904761904762, 0.010476190476190476, 0.06380952380952382, 0.09857142857142857, 0.24476190476190476, 0.6604761904761904], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Sel1.gap.json b/pfam_gap_rates/Sel1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..36c116845fc56527cc3101551cc82aeecb689f04
--- /dev/null
+++ b/pfam_gap_rates/Sel1.gap.json
@@ -0,0 +1 @@
+{"family": "Sel1", "n_seqs": 5000, "length": 40, "gap_rates": [0.761, 0.4688, 0.263, 0.222, 0.181, 0.155, 0.1154, 0.1044, 0.856, 0.852, 0.1008, 0.2344, 0.2272, 0.0846, 0.076, 0.0724, 0.089, 0.8592, 0.1096, 0.9258, 0.08, 0.0566, 0.0438, 0.042, 0.0264, 0.0228, 0.0194, 0.0178, 0.019, 0.0236, 0.0294, 0.033, 0.0428, 0.0562, 0.0734, 0.0996, 0.1338, 0.1846, 0.2584, 0.4616], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Sensor_TM1.gap.json b/pfam_gap_rates/Sensor_TM1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..910bb8d1a75051b056b8f9b2aabdf59b89516671
--- /dev/null
+++ b/pfam_gap_rates/Sensor_TM1.gap.json
@@ -0,0 +1 @@
+{"family": "Sensor_TM1", "n_seqs": 173, "length": 77, "gap_rates": [0.6878612716763006, 0.4797687861271676, 0.43352601156069365, 0.37572254335260113, 0.34104046242774566, 0.3063583815028902, 0.2138728323699422, 0.15028901734104047, 0.11560693641618497, 0.09826589595375723, 0.023121387283236993, 0.017341040462427744, 0.017341040462427744, 0.005780346820809248, 0.005780346820809248, 0.005780346820809248, 0.005780346820809248, 0.005780346820809248, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.005780346820809248, 0.011560693641618497, 0.011560693641618497, 0.011560693641618497, 0.011560693641618497, 0.017341040462427744, 0.046242774566473986, 0.09248554913294797, 0.6184971098265896, 0.5953757225433526, 0.23121387283236994, 0.27167630057803466, 0.3236994219653179, 0.37572254335260113, 0.42196531791907516, 0.45664739884393063, 0.48554913294797686, 0.49710982658959535, 0.5144508670520231, 0.5144508670520231, 0.5202312138728323, 0.5260115606936416, 0.5549132947976878], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Serinc.gap.json b/pfam_gap_rates/Serinc.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..47485e61d7f55e1587471771987d7b2492d70c51
--- /dev/null
+++ b/pfam_gap_rates/Serinc.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/SfLAP.gap.json b/pfam_gap_rates/SfLAP.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..0ff46c0f8f26f375312487520351ad3c261650de
--- /dev/null
+++ b/pfam_gap_rates/SfLAP.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Sigma70_ner.gap.json b/pfam_gap_rates/Sigma70_ner.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..eb6d8a62ec8d044d3dc62eee33926e228828e650
--- /dev/null
+++ b/pfam_gap_rates/Sigma70_ner.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Sigma70_r3.gap.json b/pfam_gap_rates/Sigma70_r3.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b682e6b53c0aeaa1976ca2ea7e5c8bb0bf3de462
--- /dev/null
+++ b/pfam_gap_rates/Sigma70_r3.gap.json
@@ -0,0 +1 @@
+{"family": "Sigma70_r3", "n_seqs": 5000, "length": 77, "gap_rates": [0.4578, 0.3356, 0.2018, 0.146, 0.0778, 0.0614, 0.0466, 0.0332, 0.024, 0.0186, 0.0144, 0.0114, 0.009, 0.0088, 0.0078, 0.0068, 0.0064, 0.0152, 0.006, 0.0054, 0.0054, 0.0046, 0.0038, 0.0034, 0.003, 0.0028, 0.0028, 0.0028, 0.0026, 0.002, 0.002, 0.0018, 0.002, 0.0022, 0.0022, 0.0024, 0.003, 0.0034, 0.0042, 0.005, 0.0074, 0.0088, 0.0106, 0.0126, 0.0154, 0.0214, 0.028, 0.0302, 0.033, 0.0362, 0.0458, 0.051, 0.0544, 0.0622, 0.0754, 0.0856, 0.1014, 0.1926, 0.1472, 0.1532, 0.17, 0.1962, 0.2062, 0.215, 0.2432, 0.2322, 0.2412, 0.2484, 0.2592, 0.3882, 0.3114, 0.3308, 0.347, 0.3662, 0.3998, 0.4662, 0.7118], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/SirB.gap.json b/pfam_gap_rates/SirB.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a8ca5dd08100416adfe80fcfdcb674db2ef78f80
--- /dev/null
+++ b/pfam_gap_rates/SirB.gap.json
@@ -0,0 +1 @@
+{"family": "SirB", "n_seqs": 182, "length": 124, "gap_rates": [0.27472527472527475, 0.2032967032967033, 0.13736263736263737, 0.08791208791208792, 0.07142857142857142, 0.07142857142857142, 0.07142857142857142, 0.07142857142857142, 0.06043956043956044, 0.06043956043956044, 0.06043956043956044, 0.06043956043956044, 0.06043956043956044, 0.06043956043956044, 0.06043956043956044, 0.06043956043956044, 0.06043956043956044, 0.06043956043956044, 0.06043956043956044, 0.06043956043956044, 0.06043956043956044, 0.06043956043956044, 0.054945054945054944, 0.054945054945054944, 0.04945054945054945, 0.03296703296703297, 0.027472527472527472, 0.04395604395604396, 0.03296703296703297, 0.03296703296703297, 0.03296703296703297, 0.027472527472527472, 0.027472527472527472, 0.03296703296703297, 0.02197802197802198, 0.02197802197802198, 0.016483516483516484, 0.005494505494505495, 0.005494505494505495, 0.005494505494505495, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.01098901098901099, 0.01098901098901099, 0.016483516483516484, 0.01098901098901099, 0.016483516483516484, 0.9230769230769231, 0.04395604395604396, 0.07692307692307693, 0.06043956043956044, 0.8956043956043956, 0.8901098901098901, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.005494505494505495, 0.005494505494505495, 0.005494505494505495, 0.005494505494505495, 0.005494505494505495, 0.005494505494505495, 0.005494505494505495, 0.005494505494505495, 0.005494505494505495, 0.005494505494505495, 0.005494505494505495, 0.945054945054945, 0.15384615384615385, 0.038461538461538464, 0.03296703296703297, 0.03296703296703297, 0.027472527472527472, 0.02197802197802198, 0.02197802197802198, 0.027472527472527472, 0.016483516483516484, 0.02197802197802198, 0.016483516483516484, 0.01098901098901099, 0.01098901098901099, 0.01098901098901099, 0.01098901098901099, 0.01098901098901099, 0.01098901098901099, 0.01098901098901099, 0.01098901098901099, 0.01098901098901099, 0.016483516483516484, 0.016483516483516484, 0.016483516483516484, 0.016483516483516484, 0.016483516483516484, 0.02197802197802198, 0.02197802197802198, 0.02197802197802198, 0.027472527472527472, 0.04395604395604396, 0.14835164835164835, 0.37362637362637363], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Sirohm_synth_M.gap.json b/pfam_gap_rates/Sirohm_synth_M.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..662225daec717c2a86870209b3f49f793b59b85a
--- /dev/null
+++ b/pfam_gap_rates/Sirohm_synth_M.gap.json
@@ -0,0 +1 @@
+{"family": "Sirohm_synth_M", "n_seqs": 711, "length": 28, "gap_rates": [0.3319268635724332, 0.18846694796061886, 0.08579465541490858, 0.0759493670886076, 0.07172995780590717, 0.02250351617440225, 0.0014064697609001407, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0014064697609001407, 0.0014064697609001407, 0.0028129395218002813, 0.0028129395218002813, 0.0028129395218002813, 0.0028129395218002813, 0.005625879043600563, 0.01969057665260197, 0.0379746835443038, 0.05063291139240506, 0.09985935302390998, 0.31223628691983124, 0.9127988748241913], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Skp1_POZ.gap.json b/pfam_gap_rates/Skp1_POZ.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c89569ef7665517fd3a4e0c20bf958edf27ffb6f
--- /dev/null
+++ b/pfam_gap_rates/Skp1_POZ.gap.json
@@ -0,0 +1 @@
+{"family": "Skp1_POZ", "n_seqs": 1149, "length": 67, "gap_rates": [0.7824194952132288, 0.257615317667537, 0.10530896431679722, 0.07484769364664925, 0.06788511749347259, 0.0670147954743255, 0.06179286335944299, 0.0557006092254134, 0.05483028720626632, 0.05221932114882506, 0.05308964316797215, 0.05221932114882506, 0.05221932114882506, 0.05134899912967798, 0.05134899912967798, 0.050478677110530897, 0.05134899912967798, 0.04873803307223673, 0.04873803307223673, 0.04873803307223673, 0.04612706701479547, 0.044386422976501305, 0.04351610095735422, 0.04351610095735422, 0.0391644908616188, 0.03742384682332463, 0.03742384682332463, 0.04003481288076589, 0.03742384682332463, 0.0391644908616188, 0.03568320278503046, 0.03220191470844212, 0.03220191470844212, 0.030461270670147953, 0.024369016536118365, 0.02175805047867711, 0.040905134899912966, 0.04612706701479547, 0.63881636205396, 0.9355961705831157, 0.7267188859878155, 0.546562228024369, 0.4134029590948651, 0.2924281984334204, 0.022628372497824196, 0.02349869451697128, 0.022628372497824196, 0.030461270670147953, 0.03568320278503046, 0.020887728459530026, 0.02175805047867711, 0.022628372497824196, 0.022628372497824196, 0.024369016536118365, 0.022628372497824196, 0.02349869451697128, 0.02610966057441253, 0.026979982593559618, 0.0278503046127067, 0.031331592689295036, 0.03307223672758921, 0.03655352480417755, 0.04177545691906005, 0.06875543951261967, 0.1227154046997389, 0.3072236727589208, 0.731940818102698], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Slx4.gap.json b/pfam_gap_rates/Slx4.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..761602d70dc536925e1eb455f739a8f0b0810360
--- /dev/null
+++ b/pfam_gap_rates/Slx4.gap.json
@@ -0,0 +1 @@
+{"family": "Slx4", "n_seqs": 151, "length": 103, "gap_rates": [0.7417218543046358, 0.3841059602649007, 0.18543046357615894, 0.11258278145695365, 0.09271523178807947, 0.059602649006622516, 0.046357615894039736, 0.046357615894039736, 0.046357615894039736, 0.033112582781456956, 0.5960264900662252, 0.6158940397350994, 0.6225165562913907, 0.6357615894039735, 0.9139072847682119, 0.9271523178807947, 0.9139072847682119, 0.6225165562913907, 0.6225165562913907, 0.609271523178808, 0.5960264900662252, 0.039735099337748346, 0.019867549668874173, 0.019867549668874173, 0.013245033112582781, 0.006622516556291391, 0.006622516556291391, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.31125827814569534, 0.2980132450331126, 0.543046357615894, 0.4900662251655629, 0.48344370860927155, 0.5695364238410596, 0.5827814569536424, 0.6225165562913907, 0.9006622516556292, 0.9072847682119205, 0.9139072847682119, 0.9139072847682119, 0.9205298013245033, 0.9271523178807947, 0.9271523178807947, 0.9337748344370861, 0.9403973509933775, 0.9403973509933775, 0.9403973509933775, 0.9403973509933775, 0.9470198675496688, 0.9403973509933775, 0.9403973509933775, 0.9403973509933775, 0.9403973509933775, 0.9271523178807947, 0.9271523178807947, 0.9271523178807947, 0.9205298013245033, 0.9139072847682119, 0.9139072847682119, 0.9072847682119205, 0.8874172185430463, 0.6158940397350994, 0.5761589403973509, 0.5629139072847682, 0.0, 0.006622516556291391, 0.0, 0.0, 0.006622516556291391, 0.006622516556291391, 0.006622516556291391, 0.006622516556291391, 0.006622516556291391, 0.006622516556291391, 0.019867549668874173, 0.019867549668874173, 0.019867549668874173, 0.039735099337748346, 0.06622516556291391, 0.07947019867549669, 0.08609271523178808, 0.09933774834437085, 0.2052980132450331, 0.5165562913907285], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/SnoaL_2.gap.json b/pfam_gap_rates/SnoaL_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..27833d70a05f0d5ef757bc6e514f2db351463586
--- /dev/null
+++ b/pfam_gap_rates/SnoaL_2.gap.json
@@ -0,0 +1 @@
+{"family": "SnoaL_2", "n_seqs": 3322, "length": 131, "gap_rates": [0.6839253461770018, 0.4184226369656833, 0.26038531005418425, 0.177001806140879, 0.14388922335942203, 0.12101143889223359, 0.09813365442504515, 0.0851896447922938, 0.07435279951836243, 0.056893437688139675, 0.04605659241420831, 0.03913305237808549, 0.032209512341962676, 0.022877784467188442, 0.016556291390728478, 0.011438892233594221, 0.009030704394942806, 0.01053582179409994, 0.005418422636965683, 0.004214328717639976, 0.004214328717639976, 0.004214328717639976, 0.0030102347983142685, 0.0033112582781456954, 0.0027092113184828417, 0.0027092113184828417, 0.0027092113184828417, 0.9187236604455148, 0.9310656231186033, 0.9253461770018061, 0.9048765803732691, 0.0027092113184828417, 0.012944009632751354, 0.9045755568934377, 0.4900662251655629, 0.016556291390728478, 0.07525586995785671, 0.04695966285370259, 0.6926550270921132, 0.7928958458759783, 0.8807947019867549, 0.9268512944009633, 0.8383503913305238, 0.7724262492474413, 0.5520770620108368, 0.014750150511739916, 0.0027092113184828417, 0.002107164358819988, 0.012944009632751354, 0.0039133052378085495, 0.003612281757977122, 0.0030102347983142685, 0.0015051173991571343, 0.002107164358819988, 0.9482239614689946, 0.0027092113184828417, 0.006020469596628537, 0.003612281757977122, 0.0030102347983142685, 0.004214328717639976, 0.027393136664659843, 0.11709813365442505, 0.936484045755569, 0.8491872366044552, 0.23148705599036726, 0.11709813365442505, 0.019566526189042744, 0.008729680915111379, 0.01926550270921132, 0.013245033112582781, 0.009331727874774232, 0.010836845273931367, 0.015653220951234198, 0.018061408789885613, 0.016556291390728478, 0.015051173991571343, 0.8847080072245636, 0.9382901866345575, 0.8019265502709211, 0.019867549668874173, 0.016857314870559904, 0.016857314870559904, 0.01625526791089705, 0.01715833835039133, 0.016857314870559904, 0.017459361830222758, 0.024081878386514148, 0.022576760987357013, 0.024382901866345574, 0.029801324503311258, 0.045755568934376885, 0.043648404575556896, 0.09271523178807947, 0.3001204093919326, 0.6210114388922336, 0.8353401565322095, 0.8798916315472607, 0.8931366646598434, 0.9262492474413004, 0.9000602046959663, 0.8871161950632149, 0.8678506923540036, 0.8061408789885611, 0.428055388320289, 0.3302227573750753, 0.21282360024081878, 0.15081276339554486, 0.10084286574352799, 0.08579169175195665, 0.09391932570740517, 0.12612883804936786, 0.10927152317880795, 0.09121011438892233, 0.9289584587597832, 0.09060806742925948, 0.0897049969897652, 0.09181216134858519, 0.09542444310656231, 0.09662853702588801, 0.09843467790487657, 0.10084286574352799, 0.10806742925948223, 0.8052378085490668, 0.12071041541240217, 0.13064419024683926, 0.14419024683925347, 0.15623118603251054, 0.17188440698374474, 0.24021673690547862, 0.4241420830824804, 0.8166767007826611], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Sof1.gap.json b/pfam_gap_rates/Sof1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..7f6ec2fb7f05fe0bf4ad8e03f4e4cf6d33adadf8
--- /dev/null
+++ b/pfam_gap_rates/Sof1.gap.json
@@ -0,0 +1 @@
+{"family": "Sof1", "n_seqs": 331, "length": 88, "gap_rates": [0.1903323262839879, 0.09063444108761329, 0.0634441087613293, 0.054380664652567974, 0.04833836858006042, 0.04833836858006042, 0.0513595166163142, 0.04229607250755287, 0.03323262839879154, 0.01812688821752266, 0.01812688821752266, 0.021148036253776436, 0.012084592145015106, 0.012084592145015106, 0.012084592145015106, 0.012084592145015106, 0.012084592145015106, 0.012084592145015106, 0.012084592145015106, 0.012084592145015106, 0.012084592145015106, 0.012084592145015106, 0.012084592145015106, 0.012084592145015106, 0.012084592145015106, 0.012084592145015106, 0.012084592145015106, 0.012084592145015106, 0.00906344410876133, 0.00906344410876133, 0.00906344410876133, 0.0030211480362537764, 0.0030211480362537764, 0.0030211480362537764, 0.0030211480362537764, 0.0030211480362537764, 0.0030211480362537764, 0.0030211480362537764, 0.0030211480362537764, 0.0030211480362537764, 0.0030211480362537764, 0.0030211480362537764, 0.006042296072507553, 0.006042296072507553, 0.006042296072507553, 0.006042296072507553, 0.006042296072507553, 0.006042296072507553, 0.006042296072507553, 0.00906344410876133, 0.00906344410876133, 0.00906344410876133, 0.00906344410876133, 0.00906344410876133, 0.00906344410876133, 0.00906344410876133, 0.00906344410876133, 0.012084592145015106, 0.012084592145015106, 0.012084592145015106, 0.012084592145015106, 0.012084592145015106, 0.01812688821752266, 0.021148036253776436, 0.021148036253776436, 0.02416918429003021, 0.02416918429003021, 0.027190332326283987, 0.03625377643504532, 0.04229607250755287, 0.0513595166163142, 0.0513595166163142, 0.06948640483383686, 0.09969788519637462, 0.11178247734138973, 0.9395770392749244, 0.13595166163141995, 0.09667673716012085, 0.1027190332326284, 0.18126888217522658, 0.13293051359516617, 0.1268882175226586, 0.13595166163141995, 0.1419939577039275, 0.14803625377643503, 0.15709969788519637, 0.2054380664652568, 0.3081570996978852], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Solute_trans_a.gap.json b/pfam_gap_rates/Solute_trans_a.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..100804ef3437b69c6ceafcb88fe0db7be11bd7ab
--- /dev/null
+++ b/pfam_gap_rates/Solute_trans_a.gap.json
@@ -0,0 +1 @@
+{"family": "Solute_trans_a", "n_seqs": 1080, "length": 317, "gap_rates": [0.9361111111111111, 0.5611111111111111, 0.3685185185185185, 0.3, 0.2712962962962963, 0.262037037037037, 0.2518518518518518, 0.25, 0.24351851851851852, 0.24166666666666667, 0.2351851851851852, 0.2351851851851852, 0.2324074074074074, 0.2324074074074074, 0.23148148148148148, 0.22962962962962963, 0.22870370370370371, 0.22962962962962963, 0.22777777777777777, 0.225, 0.22407407407407406, 0.22314814814814815, 0.21944444444444444, 0.21481481481481482, 0.21296296296296297, 0.2111111111111111, 0.21203703703703702, 0.20925925925925926, 0.20925925925925926, 0.2064814814814815, 0.21851851851851853, 0.2037037037037037, 0.2037037037037037, 0.20092592592592592, 0.19907407407407407, 0.19074074074074074, 0.18796296296296297, 0.18425925925925926, 0.18333333333333332, 0.18055555555555555, 0.17685185185185184, 0.15648148148148147, 0.15648148148148147, 0.15648148148148147, 0.15648148148148147, 0.15555555555555556, 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\ No newline at end of file
diff --git a/pfam_gap_rates/Sortase.gap.json b/pfam_gap_rates/Sortase.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b34da99880ddeccb06bdc986fd52c8075ffb042b
--- /dev/null
+++ b/pfam_gap_rates/Sortase.gap.json
@@ -0,0 +1 @@
+{"family": "Sortase", "n_seqs": 2506, "length": 224, "gap_rates": [0.30007980845969673, 0.16839584996009577, 0.12210694333599362, 0.11053471667996807, 0.10335195530726257, 0.09816440542697526, 0.09098164405426976, 0.926975259377494, 0.07581803671189145, 0.07222665602553871, 0.06983240223463687, 0.0690343176376696, 0.06664006384676775, 0.06664006384676775, 0.0690343176376696, 0.8830806065442937, 0.926975259377494, 0.7390263367916999, 0.0670391061452514, 0.7094972067039106, 0.746608140462889, 0.8280127693535515, 0.9098164405426975, 0.9489225857940942, 0.928172386272945, 0.8707102952913008, 0.8184357541899442, 0.7282521947326417, 0.6584197924980048, 0.0853950518754988, 0.11053471667996807, 0.09417398244213887, 0.10734237829209896, 0.11093375897845172, 0.10933758978451716, 0.10255387071029529, 0.041500399042298484, 0.6616121308858739, 0.7557861133280128, 0.8487629688747007, 0.8802873104549083, 0.9106145251396648, 0.8683160415003991, 0.8324022346368715, 0.7282521947326417, 0.6213088587390263, 0.03312051077414206, 0.03112529928172386, 0.030327214684756583, 0.029928172386272944, 0.029928172386272944, 0.029529130087789304, 0.02753391859537111, 0.9353551476456504, 0.025538707102952914, 0.03391859537110934, 0.07741420590582601, 0.041500399042298484, 0.9018355945730248, 0.8451715881883479, 0.05746209098164405, 0.09337589784517158, 0.02114924181963288, 0.02114924181963288, 0.7334397446129289, 0.013168395849960097, 0.012370311252992818, 0.01157222665602554, 0.010375099760574621, 0.010375099760574621, 0.010375099760574621, 0.01077414205905826, 0.7968874700718276, 0.8695131683958499, 0.8850758180367119, 0.9189944134078212, 0.8830806065442937, 0.8403830806065443, 0.7853152434158021, 0.01077414205905826, 0.8906624102154829, 0.571827613727055, 0.12609736632083002, 0.12330407023144453, 0.08060654429369513, 0.006783719074221868, 0.007182761372705506, 0.005985634477254589, 0.005985634477254589, 0.006783719074221868, 0.005985634477254589, 0.005985634477254589, 0.006783719074221868, 0.006384676775738229, 0.005985634477254589, 0.7801276935355148, 0.7833200319233838, 0.7873104549082203, 0.7853152434158021, 0.7813248204309656, 0.7741420590582602, 0.00558659217877095, 0.006783719074221868, 0.005985634477254589, 0.005985634477254589, 0.006384676775738229, 0.007581803671189146, 0.007581803671189146, 0.007182761372705506, 0.007581803671189146, 0.006783719074221868, 0.6484437350359138, 0.013168395849960097, 0.024341580207501996, 0.01675977653631285, 0.011971268954509178, 0.07781324820430965, 0.006384676775738229, 0.00558659217877095, 0.004788507581803671, 0.004788507581803671, 0.004788507581803671, 0.004788507581803671, 0.004389465283320032, 0.00558659217877095, 0.035115722266560255, 0.029529130087789304, 0.023942537909018357, 0.024740622505985636, 0.02314445331205108, 0.0335195530726257, 0.019952114924181964, 0.6644054269752594, 0.7781324820430966, 0.8128491620111732, 0.8236233040702314, 0.8383878691141261, 0.8499600957701516, 0.8798882681564246, 0.8938547486033519, 0.9253790901835595, 0.9449321628092577, 0.9329608938547486, 0.9154030327214685, 0.8874700718276137, 0.8599361532322426, 0.8455706304868316, 0.8268156424581006, 0.8184357541899442, 0.8020750199521149, 0.689146049481245, 0.6484437350359138, 0.020750199521149242, 0.19273743016759776, 0.189146049481245, 0.1879489225857941, 0.14565043894652832, 0.8256185155626496, 0.8367916999201915, 0.8579409417398244, 0.8974461292897047, 0.907023144453312, 0.9150039904229849, 0.946927374301676, 0.9233838786911412, 0.9106145251396648, 0.9018355945730248, 0.8599361532322426, 0.8511572226656026, 0.8316041500399042, 0.7928970470869913, 0.1380686352753392, 0.35794094173982444, 0.0223463687150838, 0.8320031923383878, 0.8391859537110934, 0.8463687150837989, 0.8802873104549083, 0.8878691141260974, 0.9062250598563448, 0.9209896249002394, 0.9309656823623305, 0.9465283320031923, 0.942537909018356, 0.9245810055865922, 0.9134078212290503, 0.898244213886672, 0.8846767757382282, 0.8515562649640862, 0.8423782920989625, 0.8359936153232242, 0.825219473264166, 0.017557861133280128, 0.010375099760574621, 0.009976057462090982, 0.009976057462090982, 0.009976057462090982, 0.010375099760574621, 0.0111731843575419, 0.011971268954509178, 0.014764565043894652, 0.014365522745411013, 0.8723064644852354, 0.16759776536312848, 0.11173184357541899, 0.09896249002394254, 0.12370311252992817, 0.8040702314445332, 0.9154030327214685, 0.7717478052673583, 0.6919393455706305, 0.8447725458898643, 0.05666400638467677, 0.03711093375897845, 0.03272146847565842, 0.03391859537110934, 0.03471667996807662, 0.03671189146049481, 0.04229848363926576, 0.051476456504389465, 0.0710295291300878, 0.11931364724660815, 0.2936951316839585, 0.8012769353551477], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/SoxY.gap.json b/pfam_gap_rates/SoxY.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..910b0a5fe65017f14f322353280ce57bf19f9f3f
--- /dev/null
+++ b/pfam_gap_rates/SoxY.gap.json
@@ -0,0 +1 @@
+{"family": "SoxY", "n_seqs": 334, "length": 112, "gap_rates": [0.718562874251497, 0.3592814371257485, 0.20958083832335328, 0.16467065868263472, 0.1377245508982036, 0.1407185628742515, 0.3532934131736527, 0.08083832335329341, 0.05688622754491018, 0.07784431137724551, 0.10479041916167664, 0.017964071856287425, 0.017964071856287425, 0.3712574850299401, 0.218562874251497, 0.005988023952095809, 0.005988023952095809, 0.005988023952095809, 0.005988023952095809, 0.005988023952095809, 0.005988023952095809, 0.005988023952095809, 0.005988023952095809, 0.005988023952095809, 0.005988023952095809, 0.005988023952095809, 0.005988023952095809, 0.005988023952095809, 0.005988023952095809, 0.005988023952095809, 0.005988023952095809, 0.005988023952095809, 0.005988023952095809, 0.0029940119760479044, 0.0029940119760479044, 0.0029940119760479044, 0.12874251497005987, 0.12275449101796407, 0.020958083832335328, 0.08982035928143713, 0.6467065868263473, 0.6287425149700598, 0.5658682634730539, 0.49101796407185627, 0.40718562874251496, 0.0029940119760479044, 0.0029940119760479044, 0.0029940119760479044, 0.0029940119760479044, 0.0029940119760479044, 0.0029940119760479044, 0.0029940119760479044, 0.0029940119760479044, 0.0029940119760479044, 0.0029940119760479044, 0.0029940119760479044, 0.0029940119760479044, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.023952095808383235, 0.4251497005988024, 0.07784431137724551, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.23053892215568864, 0.0, 0.0, 0.0, 0.005988023952095809, 0.0, 0.041916167664670656, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0029940119760479044, 0.2155688622754491, 0.0029940119760479044, 0.005988023952095809, 0.017964071856287425], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Spb1_C.gap.json b/pfam_gap_rates/Spb1_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..695d1deaeeeaed96be84ac7948ab75c142a9120b
--- /dev/null
+++ b/pfam_gap_rates/Spb1_C.gap.json
@@ -0,0 +1 @@
+{"family": "Spb1_C", "n_seqs": 329, "length": 259, "gap_rates": [0.7629179331306991, 0.6200607902735562, 0.5227963525835866, 0.46504559270516715, 0.44072948328267475, 0.425531914893617, 0.4133738601823708, 0.3890577507598784, 0.3890577507598784, 0.3768996960486322, 0.3860182370820669, 0.3617021276595745, 0.3465045592705167, 0.3465045592705167, 0.3343465045592705, 0.3100303951367781, 0.3009118541033435, 0.3282674772036474, 0.3252279635258359, 0.3282674772036474, 0.3677811550151976, 0.8936170212765957, 0.9361702127659575, 0.8480243161094225, 0.3768996960486322, 0.4133738601823708, 0.43465045592705165, 0.42857142857142855, 0.4316109422492401, 0.48632218844984804, 0.513677811550152, 0.11854103343465046, 0.303951367781155, 0.3343465045592705, 0.3708206686930091, 0.45896656534954405, 0.5167173252279635, 0.6322188449848024, 0.6778115501519757, 0.6930091185410334, 0.7112462006079028, 0.723404255319149, 0.756838905775076, 0.7811550151975684, 0.7993920972644377, 0.8206686930091185, 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\ No newline at end of file
diff --git a/pfam_gap_rates/Spc7_N.gap.json b/pfam_gap_rates/Spc7_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..be23f7aa1194d7e281871c1043c5dd3ab27cfb0b
--- /dev/null
+++ b/pfam_gap_rates/Spc7_N.gap.json
@@ -0,0 +1 @@
+{"family": "Spc7_N", "n_seqs": 144, "length": 1029, "gap_rates": [0.8472222222222222, 0.7638888888888888, 0.7083333333333334, 0.6944444444444444, 0.6944444444444444, 0.6944444444444444, 0.6875, 0.6875, 0.6875, 0.6875, 0.6875, 0.6875, 0.6875, 0.7222222222222222, 0.7361111111111112, 0.7569444444444444, 0.75, 0.7569444444444444, 0.7916666666666666, 0.8402777777777778, 0.8125, 0.7222222222222222, 0.6944444444444444, 0.6805555555555556, 0.6458333333333334, 0.6388888888888888, 0.6388888888888888, 0.6388888888888888, 0.6388888888888888, 0.6388888888888888, 0.6388888888888888, 0.6388888888888888, 0.6388888888888888, 0.6388888888888888, 0.6388888888888888, 0.6388888888888888, 0.6388888888888888, 0.6388888888888888, 0.6388888888888888, 0.6458333333333334, 0.6458333333333334, 0.6388888888888888, 0.6388888888888888, 0.6388888888888888, 0.6388888888888888, 0.6388888888888888, 0.6388888888888888, 0.6388888888888888, 0.6388888888888888, 0.6388888888888888, 0.6458333333333334, 0.6527777777777778, 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\ No newline at end of file
diff --git a/pfam_gap_rates/SpoIIAA-like.gap.json b/pfam_gap_rates/SpoIIAA-like.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c27c79efb6153f390d1b847ee35b003b8a20b098
--- /dev/null
+++ b/pfam_gap_rates/SpoIIAA-like.gap.json
@@ -0,0 +1 @@
+{"family": "SpoIIAA-like", "n_seqs": 359, "length": 135, "gap_rates": [0.6406685236768802, 0.2646239554317549, 0.17827298050139276, 0.12256267409470752, 0.11142061281337047, 0.10306406685236769, 0.0947075208913649, 0.07242339832869081, 0.06128133704735376, 0.05013927576601671, 0.04735376044568245, 0.04456824512534819, 0.04178272980501393, 0.03899721448467967, 0.036211699164345405, 0.033426183844011144, 0.033426183844011144, 0.6880222841225627, 0.033426183844011144, 0.04456824512534819, 0.033426183844011144, 0.019498607242339833, 0.019498607242339833, 0.06128133704735376, 0.06963788300835655, 0.04735376044568245, 0.06963788300835655, 0.35376044568245124, 0.027855153203342618, 0.8774373259052924, 0.947075208913649, 0.6100278551532033, 0.016713091922005572, 0.013927576601671309, 0.013927576601671309, 0.011142061281337047, 0.011142061281337047, 0.011142061281337047, 0.011142061281337047, 0.011142061281337047, 0.011142061281337047, 0.011142061281337047, 0.13370473537604458, 0.14484679665738162, 0.15877437325905291, 0.17827298050139276, 0.22841225626740946, 0.3370473537604457, 0.9192200557103064, 0.7047353760445683, 0.30919220055710306, 0.21727019498607242, 0.1615598885793872, 0.15041782729805014, 0.1392757660167131, 0.12534818941504178, 0.016713091922005572, 0.17270194986072424, 0.16434540389972144, 0.18384401114206128, 0.8969359331476323, 0.16991643454038996, 0.16991643454038996, 0.1532033426183844, 0.8635097493036211, 0.9415041782729805, 0.9220055710306406, 0.8245125348189415, 0.15877437325905291, 0.002785515320334262, 0.724233983286908, 0.7465181058495822, 0.7855153203342619, 0.871866295264624, 0.9164345403899722, 0.947075208913649, 0.883008356545961, 0.8050139275766016, 0.7604456824512534, 0.7298050139275766, 0.7103064066852368, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.002785515320334262, 0.947075208913649, 0.935933147632312, 0.002785515320334262, 0.002785515320334262, 0.9136490250696379, 0.005571030640668524, 0.002785515320334262, 0.002785515320334262, 0.002785515320334262, 0.6601671309192201, 0.005571030640668524, 0.002785515320334262, 0.002785515320334262, 0.0, 0.008356545961002786, 0.019498607242339833, 0.022284122562674095, 0.14484679665738162, 0.05013927576601671, 0.8857938718662952, 0.9192200557103064, 0.6768802228412256, 0.052924791086350974, 0.008356545961002786, 0.008356545961002786, 0.008356545961002786, 0.008356545961002786, 0.008356545961002786, 0.3593314763231198, 0.3565459610027855, 0.011142061281337047, 0.013927576601671309, 0.013927576601671309, 0.013927576601671309, 0.013927576601671309, 0.013927576601671309, 0.013927576601671309, 0.013927576601671309, 0.016713091922005572, 0.03899721448467967, 0.7186629526462396], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/SpoU_sub_bind.gap.json b/pfam_gap_rates/SpoU_sub_bind.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..4f1d5c46288a44cc8289e0ce2fa4ef68e5bfc599
--- /dev/null
+++ b/pfam_gap_rates/SpoU_sub_bind.gap.json
@@ -0,0 +1 @@
+{"family": "SpoU_sub_bind", "n_seqs": 2882, "length": 81, "gap_rates": [0.3827203331020125, 0.0798056904927134, 0.052394170714781405, 0.03539208882720333, 0.031922276197085354, 0.028452463566967384, 0.027411519777931992, 0.025676613462873005, 0.021859819569743234, 0.01943095072866065, 0.01977793199167245, 0.019083969465648856, 0.017696044413601664, 0.018043025676613464, 0.02914642609299098, 0.04580152671755725, 0.051700208188757805, 0.6242192921582235, 0.012491325468424705, 0.010062456627342124, 0.009368494101318528, 0.009715475364330326, 0.009021512838306732, 0.008674531575294934, 0.007286606523247745, 0.006939625260235947, 0.006939625260235947, 0.9479528105482304, 0.7709923664122137, 0.2498265093684941, 0.12526023594725885, 0.09403192227619708, 0.08709229701596113, 0.08570437196391395, 0.9472588480222068, 0.2085357390700902, 0.15336571825121442, 0.04510756419153366, 0.016308119361554477, 0.007633587786259542, 0.005898681471200555, 0.006939625260235947, 0.008674531575294934, 0.06835530881332408, 0.05968077723802915, 0.0520471894517696, 0.04614850798056905, 0.03018736988202637, 0.006939625260235947, 0.002775850104094379, 0.0024288688410825814, 0.0017349063150589867, 0.002081887578070784, 0.002081887578070784, 0.002081887578070784, 0.0024288688410825814, 0.003122831367106176, 0.007286606523247745, 0.007633587786259542, 0.007286606523247745, 0.007633587786259542, 0.007980569049271339, 0.12248438584316447, 0.9042331714087439, 0.024635669673837613, 0.007980569049271339, 0.009368494101318528, 0.0131852879944483, 0.008674531575294934, 0.008674531575294934, 0.009021512838306732, 0.010062456627342124, 0.011450381679389313, 0.014226231783483692, 0.031922276197085354, 0.0652324774462179, 0.1450381679389313, 0.2477446217904233, 0.3851492019430951, 0.563497571131159, 0.9142956280360861], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/SpoVIF.gap.json b/pfam_gap_rates/SpoVIF.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..0527951fa192e0720180efec5ace4420859a8ef1
--- /dev/null
+++ b/pfam_gap_rates/SpoVIF.gap.json
@@ -0,0 +1 @@
+{"family": "SpoVIF", "n_seqs": 154, "length": 75, "gap_rates": [0.24675324675324675, 0.09740259740259741, 0.07142857142857142, 0.05844155844155844, 0.05194805194805195, 0.045454545454545456, 0.03896103896103896, 0.032467532467532464, 0.6818181818181818, 0.6818181818181818, 0.01948051948051948, 0.01948051948051948, 0.01948051948051948, 0.012987012987012988, 0.012987012987012988, 0.006493506493506494, 0.006493506493506494, 0.006493506493506494, 0.006493506493506494, 0.006493506493506494, 0.006493506493506494, 0.006493506493506494, 0.006493506493506494, 0.006493506493506494, 0.006493506493506494, 0.006493506493506494, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.006493506493506494, 0.006493506493506494, 0.006493506493506494, 0.006493506493506494, 0.006493506493506494, 0.012987012987012988, 0.012987012987012988, 0.012987012987012988, 0.012987012987012988, 0.6753246753246753, 0.01948051948051948, 0.032467532467532464, 0.025974025974025976, 0.032467532467532464, 0.045454545454545456, 0.07142857142857142, 0.24025974025974026], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/SpoVR.gap.json b/pfam_gap_rates/SpoVR.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a73fa408c4faf20b32a04a293dc344990376e6b2
--- /dev/null
+++ b/pfam_gap_rates/SpoVR.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Spore_GerQ.gap.json b/pfam_gap_rates/Spore_GerQ.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c3246366ad8befcc557b48f7e430d7f251644203
--- /dev/null
+++ b/pfam_gap_rates/Spore_GerQ.gap.json
@@ -0,0 +1 @@
+{"family": "Spore_GerQ", "n_seqs": 129, "length": 76, "gap_rates": [0.5968992248062015, 0.06976744186046512, 0.05426356589147287, 0.046511627906976744, 0.046511627906976744, 0.03875968992248062, 0.031007751937984496, 0.031007751937984496, 0.031007751937984496, 0.031007751937984496, 0.023255813953488372, 0.023255813953488372, 0.023255813953488372, 0.007751937984496124, 0.007751937984496124, 0.007751937984496124, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.06201550387596899, 0.031007751937984496, 0.031007751937984496, 0.0, 0.0, 0.007751937984496124, 0.007751937984496124, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.007751937984496124, 0.007751937984496124, 0.0, 0.007751937984496124, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.007751937984496124, 0.007751937984496124, 0.05426356589147287, 0.05426356589147287, 0.06976744186046512, 0.07751937984496124, 0.09302325581395349], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Spore_III_AB.gap.json b/pfam_gap_rates/Spore_III_AB.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..10f4828aeb108990dab21a1babdb427b2424b089
--- /dev/null
+++ b/pfam_gap_rates/Spore_III_AB.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Spore_III_AE.gap.json b/pfam_gap_rates/Spore_III_AE.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a6772eca924b6f93bdb408f990984e4c25bd847f
--- /dev/null
+++ b/pfam_gap_rates/Spore_III_AE.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Sprouty.gap.json b/pfam_gap_rates/Sprouty.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..dc4b3428308c32cacc9f1f40f61e29e6d7c1ee0f
--- /dev/null
+++ b/pfam_gap_rates/Sprouty.gap.json
@@ -0,0 +1 @@
+{"family": "Sprouty", "n_seqs": 189, "length": 136, "gap_rates": [0.19576719576719576, 0.13756613756613756, 0.06349206349206349, 0.06349206349206349, 0.06349206349206349, 0.0582010582010582, 0.0582010582010582, 0.6455026455026455, 0.6507936507936508, 0.6455026455026455, 0.6402116402116402, 0.0582010582010582, 0.0582010582010582, 0.0582010582010582, 0.0582010582010582, 0.0582010582010582, 0.0582010582010582, 0.0582010582010582, 0.0582010582010582, 0.0582010582010582, 0.48677248677248675, 0.4708994708994709, 0.13227513227513227, 0.06878306878306878, 0.5026455026455027, 0.06878306878306878, 0.07936507936507936, 0.07407407407407407, 0.06349206349206349, 0.06349206349206349, 0.8888888888888888, 0.9312169312169312, 0.9312169312169312, 0.8888888888888888, 0.8835978835978836, 0.042328042328042326, 0.042328042328042326, 0.042328042328042326, 0.037037037037037035, 0.037037037037037035, 0.037037037037037035, 0.037037037037037035, 0.031746031746031744, 0.031746031746031744, 0.031746031746031744, 0.021164021164021163, 0.021164021164021163, 0.021164021164021163, 0.021164021164021163, 0.015873015873015872, 0.015873015873015872, 0.015873015873015872, 0.015873015873015872, 0.015873015873015872, 0.015873015873015872, 0.015873015873015872, 0.015873015873015872, 0.328042328042328, 0.2275132275132275, 0.037037037037037035, 0.042328042328042326, 0.0582010582010582, 0.042328042328042326, 0.8835978835978836, 0.8941798941798942, 0.8941798941798942, 0.9417989417989417, 0.9470899470899471, 0.9470899470899471, 0.9417989417989417, 0.8941798941798942, 0.8941798941798942, 0.873015873015873, 0.021164021164021163, 0.042328042328042326, 0.47619047619047616, 0.42328042328042326, 0.30687830687830686, 0.015873015873015872, 0.015873015873015872, 0.026455026455026454, 0.026455026455026454, 0.49206349206349204, 0.9047619047619048, 0.91005291005291, 0.91005291005291, 0.8941798941798942, 0.05291005291005291, 0.037037037037037035, 0.037037037037037035, 0.7037037037037037, 0.031746031746031744, 0.031746031746031744, 0.026455026455026454, 0.026455026455026454, 0.015873015873015872, 0.015873015873015872, 0.015873015873015872, 0.015873015873015872, 0.015873015873015872, 0.015873015873015872, 0.015873015873015872, 0.015873015873015872, 0.015873015873015872, 0.015873015873015872, 0.015873015873015872, 0.015873015873015872, 0.015873015873015872, 0.015873015873015872, 0.021164021164021163, 0.031746031746031744, 0.031746031746031744, 0.031746031746031744, 0.031746031746031744, 0.031746031746031744, 0.031746031746031744, 0.031746031746031744, 0.031746031746031744, 0.031746031746031744, 0.031746031746031744, 0.031746031746031744, 0.037037037037037035, 0.042328042328042326, 0.05291005291005291, 0.08465608465608465, 0.08994708994708994, 0.10582010582010581, 0.13227513227513227, 0.15873015873015872, 0.671957671957672, 0.671957671957672, 0.6772486772486772, 0.6772486772486772, 0.671957671957672, 0.6296296296296297, 0.30158730158730157], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Spt4.gap.json b/pfam_gap_rates/Spt4.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..cd15d259dadbe8660a18402214fbd98f7c2be31c
--- /dev/null
+++ b/pfam_gap_rates/Spt4.gap.json
@@ -0,0 +1 @@
+{"family": "Spt4", "n_seqs": 400, "length": 78, "gap_rates": [0.305, 0.105, 0.055, 0.055, 0.055, 0.055, 0.055, 0.055, 0.055, 0.0575, 0.0525, 0.04, 0.04, 0.04, 0.0375, 0.23, 0.2225, 0.21, 0.14, 0.1175, 0.0225, 0.0225, 0.0225, 0.0225, 0.5, 0.275, 0.2775, 0.2775, 0.285, 0.2875, 0.2725, 0.26, 0.245, 0.245, 0.2425, 0.2225, 0.0375, 0.0175, 0.0175, 0.0175, 0.0175, 0.02, 0.0225, 0.02, 0.02, 0.0175, 0.0225, 0.0225, 0.0275, 0.03, 0.03, 0.0275, 0.0275, 0.0275, 0.0275, 0.04, 0.0275, 0.0275, 0.0275, 0.0275, 0.0275, 0.03, 0.2225, 0.225, 0.035, 0.035, 0.04, 0.04, 0.045, 0.0475, 0.05, 0.05, 0.05, 0.05, 0.06, 0.0675, 0.0975, 0.295], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/SseB.gap.json b/pfam_gap_rates/SseB.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a1d06e5c80c479be03a6e6a4c64f6cb0c7bc6e6d
--- /dev/null
+++ b/pfam_gap_rates/SseB.gap.json
@@ -0,0 +1 @@
+{"family": "SseB", "n_seqs": 556, "length": 151, "gap_rates": [0.6492805755395683, 0.5575539568345323, 0.46223021582733814, 0.4118705035971223, 0.37589928057553956, 0.3381294964028777, 0.3183453237410072, 0.3129496402877698, 0.3039568345323741, 0.5575539568345323, 0.6366906474820144, 0.5449640287769785, 0.5035971223021583, 0.23741007194244604, 0.210431654676259, 0.18165467625899281, 0.17625899280575538, 0.21223021582733814, 0.1618705035971223, 0.10431654676258993, 0.09712230215827339, 0.09532374100719425, 0.08992805755395683, 0.08812949640287769, 0.08273381294964029, 0.9316546762589928, 0.935251798561151, 0.9370503597122302, 0.9334532374100719, 0.9100719424460432, 0.08093525179856115, 0.07913669064748201, 0.07014388489208633, 0.07014388489208633, 0.06474820143884892, 0.06115107913669065, 0.05935251798561151, 0.05935251798561151, 0.05755395683453238, 0.05755395683453238, 0.05755395683453238, 0.05755395683453238, 0.05935251798561151, 0.6960431654676259, 0.8902877697841727, 0.5359712230215827, 0.4910071942446043, 0.6330935251798561, 0.6564748201438849, 0.6996402877697842, 0.7931654676258992, 0.6258992805755396, 0.7248201438848921, 0.8579136690647482, 0.9280575539568345, 0.935251798561151, 0.9136690647482014, 0.8003597122302158, 0.6636690647482014, 0.5809352517985612, 0.5179856115107914, 0.42805755395683454, 0.3579136690647482, 0.19424460431654678, 0.1564748201438849, 0.13129496402877697, 0.9118705035971223, 0.11510791366906475, 0.10431654676258993, 0.044964028776978415, 0.02697841726618705, 0.023381294964028777, 0.019784172661870502, 0.014388489208633094, 0.014388489208633094, 0.017985611510791366, 0.1618705035971223, 0.044964028776978415, 0.10071942446043165, 0.014388489208633094, 0.05575539568345324, 0.014388489208633094, 0.008992805755395683, 0.008992805755395683, 0.008992805755395683, 0.007194244604316547, 0.007194244604316547, 0.007194244604316547, 0.007194244604316547, 0.007194244604316547, 0.008992805755395683, 0.008992805755395683, 0.8992805755395683, 0.9442446043165468, 0.9190647482014388, 0.8794964028776978, 0.43345323741007197, 0.11510791366906475, 0.0539568345323741, 0.03776978417266187, 0.023381294964028777, 0.019784172661870502, 0.012589928057553957, 0.9406474820143885, 0.9316546762589928, 0.008992805755395683, 0.012589928057553957, 0.012589928057553957, 0.012589928057553957, 0.01079136690647482, 0.01079136690647482, 0.01079136690647482, 0.01079136690647482, 0.02877697841726619, 0.02697841726618705, 0.014388489208633094, 0.01079136690647482, 0.012589928057553957, 0.01079136690647482, 0.012589928057553957, 0.014388489208633094, 0.01618705035971223, 0.01618705035971223, 0.6726618705035972, 0.8902877697841727, 0.7302158273381295, 0.49280575539568344, 0.09352517985611511, 0.01618705035971223, 0.01618705035971223, 0.01618705035971223, 0.01618705035971223, 0.01618705035971223, 0.01618705035971223, 0.01618705035971223, 0.26618705035971224, 0.9370503597122302, 0.08992805755395683, 0.03776978417266187, 0.0737410071942446, 0.07014388489208633, 0.07014388489208633, 0.08093525179856115, 0.08812949640287769, 0.11690647482014388, 0.1474820143884892, 0.17805755395683454, 0.21762589928057555, 0.26798561151079137, 0.44244604316546765, 0.8309352517985612], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Stealth_CR3.gap.json b/pfam_gap_rates/Stealth_CR3.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..4e2ce23f0e40ec389c99f4779e1b810cd0cd75e8
--- /dev/null
+++ b/pfam_gap_rates/Stealth_CR3.gap.json
@@ -0,0 +1 @@
+{"family": "Stealth_CR3", "n_seqs": 267, "length": 53, "gap_rates": [0.38202247191011235, 0.026217228464419477, 0.02247191011235955, 0.0149812734082397, 0.00749063670411985, 0.00749063670411985, 0.00749063670411985, 0.00749063670411985, 0.003745318352059925, 0.003745318352059925, 0.003745318352059925, 0.003745318352059925, 0.003745318352059925, 0.003745318352059925, 0.003745318352059925, 0.003745318352059925, 0.003745318352059925, 0.003745318352059925, 0.003745318352059925, 0.003745318352059925, 0.003745318352059925, 0.003745318352059925, 0.003745318352059925, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.003745318352059925, 0.003745318352059925, 0.8876404494382022, 0.9176029962546817, 0.8951310861423221, 0.850187265917603, 0.003745318352059925, 0.003745318352059925, 0.003745318352059925, 0.018726591760299626, 0.011235955056179775, 0.0149812734082397, 0.0149812734082397, 0.0149812734082397, 0.02247191011235955, 0.026217228464419477, 0.033707865168539325, 0.052434456928838954, 0.07116104868913857, 0.19101123595505617, 0.5692883895131086], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Stealth_CR4.gap.json b/pfam_gap_rates/Stealth_CR4.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..bd5e23820beb0265cfc92e576b16bb0e75174106
--- /dev/null
+++ b/pfam_gap_rates/Stealth_CR4.gap.json
@@ -0,0 +1 @@
+{"family": "Stealth_CR4", "n_seqs": 182, "length": 61, "gap_rates": [0.6373626373626373, 0.33516483516483514, 0.1978021978021978, 0.14835164835164835, 0.13186813186813187, 0.10989010989010989, 0.08241758241758242, 0.6703296703296703, 0.06043956043956044, 0.027472527472527472, 0.02197802197802198, 0.01098901098901099, 0.01098901098901099, 0.01098901098901099, 0.01098901098901099, 0.01098901098901099, 0.01098901098901099, 0.01098901098901099, 0.01098901098901099, 0.9230769230769231, 0.01098901098901099, 0.016483516483516484, 0.04945054945054945, 0.42857142857142855, 0.23626373626373626, 0.1043956043956044, 0.04945054945054945, 0.8076923076923077, 0.9175824175824175, 0.6098901098901099, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.005494505494505495, 0.005494505494505495, 0.005494505494505495, 0.005494505494505495, 0.01098901098901099, 0.04945054945054945, 0.23626373626373626, 0.34615384615384615, 0.4065934065934066, 0.4725274725274725, 0.5164835164835165, 0.554945054945055, 0.5824175824175825, 0.6208791208791209, 0.6703296703296703, 0.7362637362637363], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Stimulus_sens_1.gap.json b/pfam_gap_rates/Stimulus_sens_1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..1b1ac71f8715d053429a57f94755e0d9b7a0daa3
--- /dev/null
+++ b/pfam_gap_rates/Stimulus_sens_1.gap.json
@@ -0,0 +1 @@
+{"family": "Stimulus_sens_1", "n_seqs": 114, "length": 125, "gap_rates": [0.3684210526315789, 0.20175438596491227, 0.12280701754385964, 0.09649122807017543, 0.06140350877192982, 0.043859649122807015, 0.03508771929824561, 0.02631578947368421, 0.02631578947368421, 0.02631578947368421, 0.02631578947368421, 0.02631578947368421, 0.02631578947368421, 0.017543859649122806, 0.02631578947368421, 0.008771929824561403, 0.008771929824561403, 0.0, 0.0, 0.8859649122807017, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.7017543859649122, 0.9122807017543859, 0.12280701754385964, 0.10526315789473684, 0.03508771929824561, 0.008771929824561403, 0.008771929824561403, 0.017543859649122806, 0.02631578947368421, 0.02631578947368421, 0.02631578947368421, 0.02631578947368421, 0.8859649122807017, 0.9122807017543859, 0.868421052631579, 0.017543859649122806, 0.008771929824561403, 0.8245614035087719, 0.9385964912280702, 0.6929824561403509, 0.13157894736842105, 0.08771929824561403, 0.03508771929824561, 0.03508771929824561, 0.017543859649122806, 0.043859649122807015, 0.03508771929824561, 0.02631578947368421, 0.02631578947368421, 0.008771929824561403, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.017543859649122806, 0.02631578947368421, 0.6754385964912281, 0.08771929824561403, 0.07017543859649122, 0.06140350877192982, 0.043859649122807015, 0.06140350877192982, 0.06140350877192982, 0.06140350877192982, 0.9298245614035088, 0.043859649122807015, 0.03508771929824561, 0.03508771929824561, 0.03508771929824561, 0.043859649122807015, 0.03508771929824561, 0.02631578947368421, 0.06140350877192982, 0.05263157894736842, 0.05263157894736842, 0.043859649122807015, 0.043859649122807015, 0.9473684210526315, 0.9473684210526315, 0.9385964912280702, 0.03508771929824561, 0.06140350877192982, 0.043859649122807015, 0.05263157894736842, 0.05263157894736842, 0.05263157894736842, 0.05263157894736842, 0.05263157894736842, 0.05263157894736842, 0.7631578947368421, 0.05263157894736842, 0.05263157894736842, 0.07017543859649122, 0.07017543859649122, 0.07894736842105263, 0.08771929824561403, 0.09649122807017543, 0.10526315789473684, 0.14912280701754385, 0.19298245614035087, 0.2631578947368421, 0.2894736842105263, 0.35964912280701755], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Stn1.gap.json b/pfam_gap_rates/Stn1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ba42e6821ec059e96181f521b592c4da89ff10d6
--- /dev/null
+++ b/pfam_gap_rates/Stn1.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Sucrose_synth.gap.json b/pfam_gap_rates/Sucrose_synth.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..42347bfd6afb38987b6d2518f854a13d771ab0a1
--- /dev/null
+++ b/pfam_gap_rates/Sucrose_synth.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Surp.gap.json b/pfam_gap_rates/Surp.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..42f000f591dd08ed17267dedb6a52b4499a41978
--- /dev/null
+++ b/pfam_gap_rates/Surp.gap.json
@@ -0,0 +1 @@
+{"family": "Surp", "n_seqs": 1427, "length": 53, "gap_rates": [0.5942536790469517, 0.28451296426068673, 0.1107217939733707, 0.049754730203223546, 0.039243167484232656, 0.030133146461107218, 0.023125437981779958, 0.02242466713384723, 0.02102312543798178, 0.0189208128941836, 0.018220042046250877, 0.018220042046250877, 0.0161177295024527, 0.012613875262789068, 0.011913104414856343, 0.011212333566923615, 0.009110021023125438, 0.007708479327259986, 0.00700770847932726, 0.006306937631394534, 0.004905395935529082, 0.004905395935529082, 0.00350385423966363, 0.00350385423966363, 0.002803083391730904, 0.03714085494043448, 0.06587245970567625, 0.049754730203223546, 0.002102312543798178, 0.00350385423966363, 0.004204625087596356, 0.004204625087596356, 0.004905395935529082, 0.005606166783461808, 0.00700770847932726, 0.10161177295024527, 0.01051156271899089, 0.009810791871058164, 0.6538192011212334, 0.0861948142957253, 0.011212333566923615, 0.011212333566923615, 0.011913104414856343, 0.012613875262789068, 0.01401541695865452, 0.015416958654519973, 0.019621583742116328, 0.03153468815697267, 0.053258584442887176, 0.09810791871058164, 0.16678346180798878, 0.3153468815697267, 0.6377014716187807], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Sybindin.gap.json b/pfam_gap_rates/Sybindin.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d9b5da5699abe1b99c8b4ea20d2753dd903d5f81
--- /dev/null
+++ b/pfam_gap_rates/Sybindin.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Syntaxin-5_N.gap.json b/pfam_gap_rates/Syntaxin-5_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..2ab7ab9885a408237b00b9487e2bd35c235bd125
--- /dev/null
+++ b/pfam_gap_rates/Syntaxin-5_N.gap.json
@@ -0,0 +1 @@
+{"family": "Syntaxin-5_N", "n_seqs": 220, "length": 23, "gap_rates": [0.8772727272727273, 0.7090909090909091, 0.5954545454545455, 0.2, 0.13636363636363635, 0.09090909090909091, 0.031818181818181815, 0.0, 0.0, 0.0, 0.0, 0.0, 0.004545454545454545, 0.004545454545454545, 0.01818181818181818, 0.02727272727272727, 0.031818181818181815, 0.031818181818181815, 0.045454545454545456, 0.07272727272727272, 0.11818181818181818, 0.18636363636363637, 0.43636363636363634], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/T2SS-T3SS_pil_N.gap.json b/pfam_gap_rates/T2SS-T3SS_pil_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..02852480306665db943247954b8d2d6a021fe806
--- /dev/null
+++ b/pfam_gap_rates/T2SS-T3SS_pil_N.gap.json
@@ -0,0 +1 @@
+{"family": "T2SS-T3SS_pil_N", "n_seqs": 443, "length": 72, "gap_rates": [0.6320541760722348, 0.30699774266365687, 0.1670428893905192, 0.1038374717832957, 0.08577878103837472, 0.060948081264108354, 0.05417607223476298, 0.04966139954853273, 0.04288939051918736, 0.04288939051918736, 0.04288939051918736, 0.04288939051918736, 0.040632054176072234, 0.03837471783295711, 0.03837471783295711, 0.0835214446952596, 0.05417607223476298, 0.04966139954853273, 0.024830699774266364, 0.022573363431151242, 0.020316027088036117, 0.01805869074492099, 0.011286681715575621, 0.011286681715575621, 0.011286681715575621, 0.009029345372460496, 0.009029345372460496, 0.004514672686230248, 0.004514672686230248, 0.004514672686230248, 0.0, 0.0, 0.0, 0.0, 0.0, 0.002257336343115124, 0.0, 0.0, 0.0, 0.9300225733634312, 0.022573363431151242, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.002257336343115124, 0.002257336343115124, 0.002257336343115124, 0.004514672686230248, 0.004514672686230248, 0.006772009029345372, 0.006772009029345372, 0.004514672686230248, 0.004514672686230248, 0.006772009029345372, 0.006772009029345372, 0.011286681715575621, 0.01805869074492099, 0.020316027088036117, 0.23702031602708803, 0.05869074492099323, 0.04740406320541761, 0.04966139954853273, 0.05191873589164785, 0.056433408577878104, 0.06320541760722348, 0.07900677200902935, 0.10835214446952596, 0.6794582392776524], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/TANGO2.gap.json b/pfam_gap_rates/TANGO2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a45ab0cfe975038a38b5825aa3aeb27721b5eb30
--- /dev/null
+++ b/pfam_gap_rates/TANGO2.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/TAXi_C.gap.json b/pfam_gap_rates/TAXi_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..04bd366fa888e75c1a26d24e568e3920e04b3ebc
--- /dev/null
+++ b/pfam_gap_rates/TAXi_C.gap.json
@@ -0,0 +1 @@
+{"family": "TAXi_C", "n_seqs": 1839, "length": 182, "gap_rates": [0.5508428493746601, 0.17455138662316477, 0.16748232735182164, 0.15932572050027188, 0.15606307775965197, 0.15443175638934203, 0.15225666122892875, 0.14953779227841218, 0.14790647090810222, 0.1468189233278956, 0.14627514953779228, 0.14518760195758565, 0.14355628058727568, 0.14410005437737902, 0.14410005437737902, 0.1408374116367591, 0.1408374116367591, 0.1408374116367591, 0.14138118542686243, 0.14246873300706905, 0.15388798259923872, 0.16965742251223492, 0.2642740619902121, 0.5171288743882545, 0.5154975530179445, 0.9135399673735726, 0.47525829255029906, 0.4410005437737901, 0.37411636759108213, 0.2501359434475258, 0.15551930396954866, 0.12071778140293637, 0.10005437737901034, 0.08863512778684067, 0.06688417618270799, 0.06090266449157151, 0.06035889070146819, 0.059271343121261554, 0.05600870038064165, 0.05600870038064165, 0.05655247417074497, 0.05600870038064165, 0.05546492659053834, 0.05546492659053834, 0.05328983143012507, 0.052202283849918436, 0.051658510059815116, 0.05274605764002175, 0.052202283849918436, 0.052202283849918436, 0.052202283849918436, 0.051658510059815116, 0.05057096247960848, 0.051658510059815116, 0.051658510059815116, 0.0511147362697118, 0.053833605220228384, 0.054377379010331704, 0.054377379010331704, 0.05492115280043502, 0.05546492659053834, 0.05600870038064165, 0.05655247417074497, 0.10114192495921696, 0.456226209896683, 0.9320282762370854, 0.8863512778684067, 0.4415443175638934, 0.3860793909733551, 0.47525829255029906, 0.5421424687330071, 0.12561174551386622, 0.06090266449157151, 0.053833605220228384, 0.051658510059815116, 0.04948341489940185, 0.04676454594888527, 0.053833605220228384, 0.05002718868950517, 0.04567699836867863, 0.043501903208265365, 0.043501903208265365, 0.043501903208265365, 0.043501903208265365, 0.044589450788472, 0.04513322457857531, 0.7373572593800979, 0.7362697117998912, 0.933115823817292, 0.9206090266449157, 0.679173463839043, 0.564437194127243, 0.2207721587819467, 0.14192495921696574, 0.07449700924415444, 0.0674279499728113, 0.042958129418162044, 0.042958129418162044, 0.042958129418162044, 0.04404567699836868, 0.043501903208265365, 0.04404567699836868, 0.043501903208265365, 0.042958129418162044, 0.0413268080478521, 0.04241435562805873, 0.25394235997824904, 0.9347471451876019, 0.9021207177814029, 0.04567699836867863, 0.04241435562805873, 0.8966829798803697, 0.043501903208265365, 0.042958129418162044, 0.04513322457857531, 0.043501903208265365, 0.04513322457857531, 0.04567699836867863, 0.04513322457857531, 0.046220772158781946, 0.04567699836867863, 0.04567699836867863, 0.044589450788472, 0.04513322457857531, 0.10114192495921696, 0.08591625883632409, 0.9320282762370854, 0.7373572593800979, 0.08700380641653073, 0.08537248504622078, 0.8624252311038608, 0.9189777052746058, 0.9467101685698749, 0.8977705274605764, 0.8450244698205547, 0.0929853181076672, 0.0478520935290919, 0.04730831973898858, 0.04730831973898858, 0.048395867319195214, 0.048395867319195214, 0.048939641109298535, 0.05057096247960848, 0.051658510059815116, 0.8531810766721044, 0.924415443175639, 0.945078847199565, 0.8879825992387167, 0.7612833061446438, 0.6133768352365416, 0.49157150625339857, 0.3703099510603589, 0.2262098966829799, 0.07069059271343121, 0.06090266449157151, 0.059271343121261554, 0.059271343121261554, 0.059271343121261554, 0.059271343121261554, 0.05872756933115824, 0.06144643828167482, 0.06253398586188146, 0.06525285481239804, 0.06579662860250136, 0.06688417618270799, 0.06688417618270799, 0.06797172376291463, 0.06851549755301795, 0.06851549755301795, 0.07177814029363784, 0.07177814029363784, 0.07177814029363784, 0.0734094616639478, 0.07830342577487764, 0.0799347471451876, 0.08102229472539424, 0.0826536160957042, 0.08754758020663404, 0.09461663947797716, 0.13159325720500273, 0.24578575312669929, 0.8466557911908646], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/TFIIB.gap.json b/pfam_gap_rates/TFIIB.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..6e648a218c2409b55e522a95543c452492ddc269
--- /dev/null
+++ b/pfam_gap_rates/TFIIB.gap.json
@@ -0,0 +1 @@
+{"family": "TFIIB", "n_seqs": 1785, "length": 74, "gap_rates": [0.39551820728291315, 0.24817927170868348, 0.15966386554621848, 0.11876750700280111, 0.09859943977591036, 0.08907563025210084, 0.08571428571428572, 0.08179271708683473, 0.07955182072829131, 0.0773109243697479, 0.07394957983193277, 0.05322128851540616, 0.8246498599439775, 0.8504201680672269, 0.8128851540616246, 0.039775910364145656, 0.036414565826330535, 0.03361344537815126, 0.029131652661064426, 0.02689075630252101, 0.021848739495798318, 0.021288515406162466, 0.01904761904761905, 0.018487394957983194, 0.01680672268907563, 0.015126050420168067, 0.014565826330532213, 0.011204481792717087, 0.011204481792717087, 0.009523809523809525, 0.010084033613445379, 0.007282913165266107, 0.007282913165266107, 0.007282913165266107, 0.030252100840336135, 0.03081232492997199, 0.0028011204481792717, 0.002240896358543417, 0.0028011204481792717, 0.0033613445378151263, 0.0016806722689075631, 0.0011204481792717086, 0.0016806722689075631, 0.0016806722689075631, 0.0016806722689075631, 0.0028011204481792717, 0.0028011204481792717, 0.0028011204481792717, 0.00392156862745098, 0.0056022408963585435, 0.0067226890756302525, 0.0067226890756302525, 0.008963585434173669, 0.010644257703081233, 0.011764705882352941, 0.015126050420168067, 0.016246498599439777, 0.01904761904761905, 0.024089635854341738, 0.026330532212885154, 0.026330532212885154, 0.029131652661064426, 0.029131652661064426, 0.032492997198879554, 0.040336134453781515, 0.0453781512605042, 0.05826330532212885, 0.07282913165266107, 0.12997198879551822, 0.1400560224089636, 0.17478991596638654, 0.21176470588235294, 0.2812324929971989, 0.35798319327731093], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/TFIID_30kDa.gap.json b/pfam_gap_rates/TFIID_30kDa.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..2cc63f21cc9566cf220bb930f3281f3a046833d5
--- /dev/null
+++ b/pfam_gap_rates/TFIID_30kDa.gap.json
@@ -0,0 +1 @@
+{"family": "TFIID_30kDa", "n_seqs": 294, "length": 54, "gap_rates": [0.09523809523809523, 0.05782312925170068, 0.027210884353741496, 0.027210884353741496, 0.027210884353741496, 0.027210884353741496, 0.023809523809523808, 0.02040816326530612, 0.02040816326530612, 0.02040816326530612, 0.017006802721088437, 0.013605442176870748, 0.013605442176870748, 0.013605442176870748, 0.01020408163265306, 0.01020408163265306, 0.01020408163265306, 0.01020408163265306, 0.01020408163265306, 0.7653061224489796, 0.935374149659864, 0.7721088435374149, 0.7585034013605442, 0.01020408163265306, 0.01020408163265306, 0.01020408163265306, 0.01020408163265306, 0.01020408163265306, 0.01020408163265306, 0.01020408163265306, 0.006802721088435374, 0.006802721088435374, 0.006802721088435374, 0.006802721088435374, 0.006802721088435374, 0.006802721088435374, 0.006802721088435374, 0.02040816326530612, 0.02040816326530612, 0.023809523809523808, 0.023809523809523808, 0.023809523809523808, 0.027210884353741496, 0.027210884353741496, 0.027210884353741496, 0.027210884353741496, 0.034013605442176874, 0.034013605442176874, 0.034013605442176874, 0.04081632653061224, 0.05102040816326531, 0.05782312925170068, 0.07142857142857142, 0.1360544217687075], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/TFIIE-A_C.gap.json b/pfam_gap_rates/TFIIE-A_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..54de0c5cd1101ddc540a3272d5e721a57c497e98
--- /dev/null
+++ b/pfam_gap_rates/TFIIE-A_C.gap.json
@@ -0,0 +1 @@
+{"family": "TFIIE-A_C", "n_seqs": 101, "length": 98, "gap_rates": [0.6831683168316832, 0.6039603960396039, 0.5742574257425742, 0.5445544554455446, 0.5148514851485149, 0.49504950495049505, 0.49504950495049505, 0.46534653465346537, 0.45544554455445546, 0.43564356435643564, 0.40594059405940597, 0.40594059405940597, 0.38613861386138615, 0.38613861386138615, 0.36633663366336633, 0.32673267326732675, 0.31683168316831684, 0.31683168316831684, 0.31683168316831684, 0.3069306930693069, 0.31683168316831684, 0.3069306930693069, 0.33663366336633666, 0.44554455445544555, 0.6039603960396039, 0.8415841584158416, 0.8514851485148515, 0.8712871287128713, 0.9207920792079208, 0.8613861386138614, 0.8514851485148515, 0.8217821782178217, 0.43564356435643564, 0.39603960396039606, 0.19801980198019803, 0.13861386138613863, 0.1188118811881188, 0.1188118811881188, 0.1188118811881188, 0.0891089108910891, 0.0891089108910891, 0.07920792079207921, 0.0891089108910891, 0.15841584158415842, 0.7821782178217822, 0.8217821782178217, 0.9405940594059405, 0.8217821782178217, 0.7029702970297029, 0.3465346534653465, 0.24752475247524752, 0.06930693069306931, 0.009900990099009901, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.16831683168316833, 0.6534653465346535, 0.4752475247524752, 0.0, 0.009900990099009901, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.009900990099009901, 0.009900990099009901, 0.009900990099009901, 0.019801980198019802, 0.0297029702970297, 0.04950495049504951, 0.1188118811881188, 0.12871287128712872, 0.15841584158415842, 0.21782178217821782, 0.2376237623762376, 0.3465346534653465, 0.3465346534653465, 0.3465346534653465, 0.43564356435643564, 0.5643564356435643], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/THOC7.gap.json b/pfam_gap_rates/THOC7.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..89c7a62157f34ea0cfa03a0fe9d1de034252ac28
--- /dev/null
+++ b/pfam_gap_rates/THOC7.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/TIP49.gap.json b/pfam_gap_rates/TIP49.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..3f4901dd560b961ee42f688e612427870f45223d
--- /dev/null
+++ b/pfam_gap_rates/TIP49.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/TMEM135_C_rich.gap.json b/pfam_gap_rates/TMEM135_C_rich.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..18a1ed1aadb7bde0d4370547be597f458dd9b84b
--- /dev/null
+++ b/pfam_gap_rates/TMEM135_C_rich.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/TPPII.gap.json b/pfam_gap_rates/TPPII.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a8df8229e2308ca478f0b6f9dbfdbbe7c14533ee
--- /dev/null
+++ b/pfam_gap_rates/TPPII.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/TPR_1.gap.json b/pfam_gap_rates/TPR_1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..5e75051f27fca4e30766c24b4a7e1efdd9476a40
--- /dev/null
+++ b/pfam_gap_rates/TPR_1.gap.json
@@ -0,0 +1 @@
+{"family": "TPR_1", "n_seqs": 5000, "length": 34, "gap_rates": [0.6606, 0.2876, 0.0908, 0.0382, 0.0204, 0.0094, 0.004, 0.0012, 0.0006, 0.0002, 0.0002, 0.0002, 0.0002, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0004, 0.001, 0.0026, 0.007, 0.019, 0.0392, 0.0738, 0.1628, 0.3676], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/TPR_21.gap.json b/pfam_gap_rates/TPR_21.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b0ae0a8c563e342ce6318d2391de0a471408b058
--- /dev/null
+++ b/pfam_gap_rates/TPR_21.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/TPT.gap.json b/pfam_gap_rates/TPT.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f1f858cb22eef2a8bac3062431cd03b74924d00d
--- /dev/null
+++ b/pfam_gap_rates/TPT.gap.json
@@ -0,0 +1 @@
+{"family": "TPT", "n_seqs": 2906, "length": 330, "gap_rates": [0.8220922229869236, 0.7288368891947694, 0.6300757054370268, 0.5240880935994494, 0.4700619408121129, 0.43702684101858225, 0.41293874741913283, 0.39504473503097043, 0.37955953200275294, 0.3630419821059876, 0.2997247075017206, 0.23812801101169992, 0.20302821748107364, 0.1930488644184446, 0.19098417068134893, 0.1882312456985547, 0.18203716448726773, 0.17584308327598072, 0.17136958017894013, 0.16999311768754302, 0.16964900206469374, 0.16758430832759807, 0.16655196145905024, 0.16517549896765313, 0.1641431520991053, 0.15863730213351687, 0.15141087405368203, 0.616655196145905, 0.8719889883000688, 0.8602890571231934, 0.5894700619408121, 0.14934618031658636, 0.1486579490708878, 0.14762560220233997, 0.14556090846524433, 0.14349621472814866, 0.141431520991053, 0.13867859600825877, 0.13764624913971094, 0.13730213351686166, 0.13592567102546455, 0.13626978664831382, 0.13558155540261527, 0.13420509291121818, 0.13351686166551963, 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\ No newline at end of file
diff --git a/pfam_gap_rates/TRAP_alpha.gap.json b/pfam_gap_rates/TRAP_alpha.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..70c08dc414522fd880f5f5bec01a9df5a8a183ed
--- /dev/null
+++ b/pfam_gap_rates/TRAP_alpha.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/TRC8_N.gap.json b/pfam_gap_rates/TRC8_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..25b4e6831c0f86eea87a13248c67a4793fbc551d
--- /dev/null
+++ b/pfam_gap_rates/TRC8_N.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/TRCF.gap.json b/pfam_gap_rates/TRCF.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..1fdb1b522e3e13fe56d877df17ed4814439fe88e
--- /dev/null
+++ b/pfam_gap_rates/TRCF.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/TROVE.gap.json b/pfam_gap_rates/TROVE.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..2e82e576beaa11b6313817280b7bb9db5b33ec61
--- /dev/null
+++ b/pfam_gap_rates/TROVE.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/TRSP.gap.json b/pfam_gap_rates/TRSP.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..3db7d6f850b85d50542c387a72ec9e37c6a03e83
--- /dev/null
+++ b/pfam_gap_rates/TRSP.gap.json
@@ -0,0 +1 @@
+{"family": "TRSP", "n_seqs": 129, "length": 156, "gap_rates": [0.6356589147286822, 0.4418604651162791, 0.4186046511627907, 0.4186046511627907, 0.4186046511627907, 0.4186046511627907, 0.4186046511627907, 0.4186046511627907, 0.43410852713178294, 0.43410852713178294, 0.40310077519379844, 0.40310077519379844, 0.3953488372093023, 0.3798449612403101, 0.37209302325581395, 0.34108527131782945, 0.3333333333333333, 0.3178294573643411, 0.2868217054263566, 0.24806201550387597, 0.24806201550387597, 0.20930232558139536, 0.1937984496124031, 0.17829457364341086, 0.16279069767441862, 0.13953488372093023, 0.13953488372093023, 0.13178294573643412, 0.13178294573643412, 0.18604651162790697, 0.3953488372093023, 0.7364341085271318, 0.8682170542635659, 0.9224806201550387, 0.937984496124031, 0.9457364341085271, 0.9457364341085271, 0.937984496124031, 0.9069767441860465, 0.8449612403100775, 0.627906976744186, 0.09302325581395349, 0.03875968992248062, 0.007751937984496124, 0.007751937984496124, 0.007751937984496124, 0.007751937984496124, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.7984496124031008, 0.8914728682170543, 0.7054263565891473, 0.27906976744186046, 0.26356589147286824, 0.2558139534883721, 0.023255813953488372, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.2713178294573643, 0.2713178294573643, 0.27906976744186046, 0.27906976744186046, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.007751937984496124, 0.007751937984496124, 0.007751937984496124, 0.007751937984496124, 0.0, 0.0, 0.0, 0.0, 0.007751937984496124, 0.007751937984496124, 0.007751937984496124, 0.0, 0.031007751937984496, 0.7209302325581395, 0.7674418604651163, 0.937984496124031, 0.7674418604651163, 0.007751937984496124, 0.007751937984496124, 0.007751937984496124, 0.007751937984496124, 0.007751937984496124, 0.007751937984496124, 0.007751937984496124, 0.023255813953488372, 0.14728682170542637, 0.13178294573643412, 0.8527131782945736, 0.8837209302325582, 0.8992248062015504, 0.875968992248062, 0.8217054263565892, 0.023255813953488372, 0.023255813953488372, 0.03875968992248062, 0.031007751937984496, 0.031007751937984496, 0.03875968992248062, 0.046511627906976744, 0.046511627906976744, 0.05426356589147287, 0.05426356589147287, 0.06201550387596899, 0.07751937984496124, 0.13178294573643412, 0.17054263565891473, 0.23255813953488372, 0.2868217054263566, 0.32558139534883723, 0.7829457364341085, 0.7829457364341085, 0.7286821705426356, 0.4263565891472868, 0.4108527131782946, 0.4186046511627907, 0.43410852713178294, 0.46511627906976744, 0.5426356589147286, 0.6744186046511628], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Tautomerase_3.gap.json b/pfam_gap_rates/Tautomerase_3.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..169c546f7e32dd913863a4ecfa2e69f358a562f6
--- /dev/null
+++ b/pfam_gap_rates/Tautomerase_3.gap.json
@@ -0,0 +1 @@
+{"family": "Tautomerase_3", "n_seqs": 111, "length": 153, "gap_rates": [0.09009009009009009, 0.09009009009009009, 0.06306306306306306, 0.06306306306306306, 0.06306306306306306, 0.06306306306306306, 0.06306306306306306, 0.06306306306306306, 0.05405405405405406, 0.05405405405405406, 0.27927927927927926, 0.04504504504504504, 0.04504504504504504, 0.04504504504504504, 0.7567567567567568, 0.04504504504504504, 0.04504504504504504, 0.04504504504504504, 0.04504504504504504, 0.04504504504504504, 0.04504504504504504, 0.036036036036036036, 0.036036036036036036, 0.036036036036036036, 0.036036036036036036, 0.036036036036036036, 0.036036036036036036, 0.036036036036036036, 0.036036036036036036, 0.036036036036036036, 0.9279279279279279, 0.036036036036036036, 0.09009009009009009, 0.09009009009009009, 0.6576576576576577, 0.08108108108108109, 0.036036036036036036, 0.036036036036036036, 0.036036036036036036, 0.036036036036036036, 0.036036036036036036, 0.036036036036036036, 0.036036036036036036, 0.036036036036036036, 0.036036036036036036, 0.036036036036036036, 0.036036036036036036, 0.036036036036036036, 0.036036036036036036, 0.036036036036036036, 0.036036036036036036, 0.04504504504504504, 0.9009009009009009, 0.9369369369369369, 0.8828828828828829, 0.04504504504504504, 0.04504504504504504, 0.04504504504504504, 0.04504504504504504, 0.04504504504504504, 0.04504504504504504, 0.04504504504504504, 0.04504504504504504, 0.04504504504504504, 0.04504504504504504, 0.04504504504504504, 0.8198198198198198, 0.8918918918918919, 0.9369369369369369, 0.9279279279279279, 0.8558558558558559, 0.7297297297297297, 0.4594594594594595, 0.0990990990990991, 0.10810810810810811, 0.10810810810810811, 0.08108108108108109, 0.11711711711711711, 0.13513513513513514, 0.0990990990990991, 0.12612612612612611, 0.8648648648648649, 0.12612612612612611, 0.13513513513513514, 0.12612612612612611, 0.12612612612612611, 0.14414414414414414, 0.14414414414414414, 0.15315315315315314, 0.16216216216216217, 0.17117117117117117, 0.16216216216216217, 0.9459459459459459, 0.6666666666666666, 0.13513513513513514, 0.13513513513513514, 0.12612612612612611, 0.12612612612612611, 0.12612612612612611, 0.12612612612612611, 0.11711711711711711, 0.11711711711711711, 0.12612612612612611, 0.12612612612612611, 0.12612612612612611, 0.14414414414414414, 0.15315315315315314, 0.16216216216216217, 0.17117117117117117, 0.16216216216216217, 0.9459459459459459, 0.17117117117117117, 0.18018018018018017, 0.17117117117117117, 0.17117117117117117, 0.17117117117117117, 0.18018018018018017, 0.18018018018018017, 0.17117117117117117, 0.17117117117117117, 0.18018018018018017, 0.1981981981981982, 0.18018018018018017, 0.25225225225225223, 0.23423423423423423, 0.1891891891891892, 0.18018018018018017, 0.18018018018018017, 0.1891891891891892, 0.1891891891891892, 0.1891891891891892, 0.1981981981981982, 0.1981981981981982, 0.2072072072072072, 0.21621621621621623, 0.21621621621621623, 0.21621621621621623, 0.21621621621621623, 0.21621621621621623, 0.21621621621621623, 0.22522522522522523, 0.22522522522522523, 0.24324324324324326, 0.25225225225225223, 0.40540540540540543, 0.42342342342342343, 0.27927927927927926, 0.2702702702702703, 0.2972972972972973, 0.3153153153153153, 0.36036036036036034, 0.3783783783783784, 0.5765765765765766], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Tcp11.gap.json b/pfam_gap_rates/Tcp11.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b78bdbe59ee5e3e9188b81576a1a30298baa9a3d
--- /dev/null
+++ b/pfam_gap_rates/Tcp11.gap.json
@@ -0,0 +1 @@
+{"family": "Tcp11", "n_seqs": 481, "length": 728, "gap_rates": [0.43451143451143454, 0.3076923076923077, 0.29521829521829523, 0.2869022869022869, 0.28482328482328484, 0.28482328482328484, 0.28274428274428276, 0.28274428274428276, 0.28482328482328484, 0.2785862785862786, 0.28482328482328484, 0.2785862785862786, 0.2661122661122661, 0.26403326403326405, 0.3471933471933472, 0.49480249480249483, 0.4386694386694387, 0.4074844074844075, 0.6756756756756757, 0.738045738045738, 0.8918918918918919, 0.9043659043659044, 0.8648648648648649, 0.6943866943866944, 0.6278586278586279, 0.2577962577962578, 0.20582120582120583, 0.19542619542619544, 0.17463617463617465, 0.16632016632016633, 0.16632016632016633, 0.16632016632016633, 0.16632016632016633, 0.16424116424116425, 0.15384615384615385, 0.15176715176715178, 0.1496881496881497, 0.1496881496881497, 0.1496881496881497, 0.14760914760914762, 0.14760914760914762, 0.14760914760914762, 0.1496881496881497, 0.1496881496881497, 0.1496881496881497, 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\ No newline at end of file
diff --git a/pfam_gap_rates/Telomerase_RBD.gap.json b/pfam_gap_rates/Telomerase_RBD.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..3fb88ec1a65d0e9265df39bec49f9f4e909c5898
--- /dev/null
+++ b/pfam_gap_rates/Telomerase_RBD.gap.json
@@ -0,0 +1 @@
+{"family": "Telomerase_RBD", "n_seqs": 214, "length": 200, "gap_rates": [0.4766355140186916, 0.1308411214953271, 0.12149532710280374, 0.10747663551401869, 0.09345794392523364, 0.08878504672897196, 0.08411214953271028, 0.08411214953271028, 0.08411214953271028, 0.0794392523364486, 0.0794392523364486, 0.0794392523364486, 0.0794392523364486, 0.0794392523364486, 0.07009345794392523, 0.06074766355140187, 0.06074766355140187, 0.06074766355140187, 0.08878504672897196, 0.09813084112149532, 0.780373831775701, 0.7897196261682243, 0.7850467289719626, 0.7710280373831776, 0.08878504672897196, 0.06542056074766354, 0.06074766355140187, 0.06074766355140187, 0.0514018691588785, 0.04672897196261682, 0.04672897196261682, 0.04672897196261682, 0.04672897196261682, 0.04672897196261682, 0.04672897196261682, 0.0514018691588785, 0.0514018691588785, 0.0514018691588785, 0.0514018691588785, 0.0514018691588785, 0.056074766355140186, 0.06074766355140187, 0.0514018691588785, 0.06074766355140187, 0.056074766355140186, 0.0514018691588785, 0.0514018691588785, 0.0514018691588785, 0.0514018691588785, 0.0514018691588785, 0.0514018691588785, 0.0514018691588785, 0.0514018691588785, 0.04672897196261682, 0.04672897196261682, 0.0514018691588785, 0.0514018691588785, 0.0514018691588785, 0.04672897196261682, 0.0514018691588785, 0.056074766355140186, 0.06542056074766354, 0.11682242990654206, 0.10747663551401869, 0.08878504672897196, 0.0794392523364486, 0.14018691588785046, 0.397196261682243, 0.7476635514018691, 0.7990654205607477, 0.8177570093457944, 0.8457943925233645, 0.8551401869158879, 0.8644859813084113, 0.8738317757009346, 0.897196261682243, 0.897196261682243, 0.9018691588785047, 0.9299065420560748, 0.9345794392523364, 0.9345794392523364, 0.9392523364485982, 0.9439252336448598, 0.9485981308411215, 0.9485981308411215, 0.9485981308411215, 0.9485981308411215, 0.9485981308411215, 0.9485981308411215, 0.9485981308411215, 0.9485981308411215, 0.9485981308411215, 0.9485981308411215, 0.9485981308411215, 0.9485981308411215, 0.9485981308411215, 0.9485981308411215, 0.9485981308411215, 0.9485981308411215, 0.9485981308411215, 0.9485981308411215, 0.9485981308411215, 0.9485981308411215, 0.9439252336448598, 0.9439252336448598, 0.9345794392523364, 0.9345794392523364, 0.9345794392523364, 0.9018691588785047, 0.9018691588785047, 0.897196261682243, 0.8925233644859814, 0.8691588785046729, 0.8644859813084113, 0.8457943925233645, 0.8457943925233645, 0.8084112149532711, 0.7850467289719626, 0.7149532710280374, 0.40186915887850466, 0.3878504672897196, 0.3130841121495327, 0.2803738317757009, 0.2616822429906542, 0.2570093457943925, 0.2523364485981308, 0.2383177570093458, 0.18691588785046728, 0.102803738317757, 0.8551401869158879, 0.8551401869158879, 0.8598130841121495, 0.883177570093458, 0.883177570093458, 0.8878504672897196, 0.883177570093458, 0.8598130841121495, 0.8598130841121495, 0.8551401869158879, 0.8551401869158879, 0.0794392523364486, 0.06542056074766354, 0.056074766355140186, 0.0514018691588785, 0.04672897196261682, 0.04672897196261682, 0.04672897196261682, 0.04205607476635514, 0.04205607476635514, 0.04205607476635514, 0.03271028037383177, 0.03271028037383177, 0.03271028037383177, 0.03271028037383177, 0.03271028037383177, 0.03271028037383177, 0.03271028037383177, 0.03271028037383177, 0.037383177570093455, 0.028037383177570093, 0.028037383177570093, 0.04672897196261682, 0.03271028037383177, 0.037383177570093455, 0.03271028037383177, 0.028037383177570093, 0.037383177570093455, 0.037383177570093455, 0.037383177570093455, 0.04205607476635514, 0.04205607476635514, 0.04672897196261682, 0.04672897196261682, 0.04672897196261682, 0.04205607476635514, 0.13551401869158877, 0.056074766355140186, 0.04672897196261682, 0.04205607476635514, 0.04205607476635514, 0.04205607476635514, 0.04205607476635514, 0.04205607476635514, 0.04672897196261682, 0.04672897196261682, 0.04672897196261682, 0.04672897196261682, 0.04672897196261682, 0.04672897196261682, 0.04672897196261682, 0.04672897196261682, 0.04672897196261682, 0.0514018691588785, 0.06074766355140187, 0.12149532710280374, 0.13551401869158877, 0.1822429906542056, 0.2803738317757009, 0.5280373831775701, 0.9205607476635514], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Telomere_reg-2.gap.json b/pfam_gap_rates/Telomere_reg-2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f8ccbd4deb58f3de6a41946719b508bdf3ed4fba
--- /dev/null
+++ b/pfam_gap_rates/Telomere_reg-2.gap.json
@@ -0,0 +1 @@
+{"family": "Telomere_reg-2", "n_seqs": 283, "length": 133, "gap_rates": [0.26501766784452296, 0.21201413427561838, 0.14840989399293286, 0.0636042402826855, 0.0636042402826855, 0.05653710247349823, 0.05653710247349823, 0.053003533568904596, 0.053003533568904596, 0.045936395759717315, 0.045936395759717315, 0.045936395759717315, 0.7809187279151943, 0.833922261484099, 0.9081272084805654, 0.9293286219081273, 0.9363957597173145, 0.9151943462897526, 0.8904593639575972, 0.8127208480565371, 0.7632508833922261, 0.08480565371024736, 0.04240282685512368, 0.9399293286219081, 0.028268551236749116, 0.028268551236749116, 0.0353356890459364, 0.028268551236749116, 0.028268551236749116, 0.028268551236749116, 0.028268551236749116, 0.028268551236749116, 0.028268551236749116, 0.028268551236749116, 0.028268551236749116, 0.028268551236749116, 0.028268551236749116, 0.028268551236749116, 0.028268551236749116, 0.028268551236749116, 0.024734982332155476, 0.024734982332155476, 0.9363957597173145, 0.024734982332155476, 0.028268551236749116, 0.024734982332155476, 0.024734982332155476, 0.5371024734982333, 0.558303886925795, 0.49823321554770317, 0.028268551236749116, 0.03180212014134275, 0.024734982332155476, 0.024734982332155476, 0.028268551236749116, 0.028268551236749116, 0.024734982332155476, 0.024734982332155476, 0.024734982332155476, 0.024734982332155476, 0.024734982332155476, 0.024734982332155476, 0.024734982332155476, 0.024734982332155476, 0.02120141342756184, 0.02120141342756184, 0.8798586572438163, 0.9399293286219081, 0.9399293286219081, 0.9363957597173145, 0.8763250883392226, 0.024734982332155476, 0.06713780918727916, 0.06713780918727916, 0.038869257950530034, 0.8515901060070671, 0.9222614840989399, 0.833922261484099, 0.024734982332155476, 0.02120141342756184, 0.02120141342756184, 0.02120141342756184, 0.02120141342756184, 0.0176678445229682, 0.0176678445229682, 0.0176678445229682, 0.0176678445229682, 0.0176678445229682, 0.0176678445229682, 0.0176678445229682, 0.0176678445229682, 0.0176678445229682, 0.0176678445229682, 0.0176678445229682, 0.0176678445229682, 0.0176678445229682, 0.0176678445229682, 0.02120141342756184, 0.0176678445229682, 0.02120141342756184, 0.07420494699646643, 0.02120141342756184, 0.028268551236749116, 0.07773851590106007, 0.03180212014134275, 0.0353356890459364, 0.0353356890459364, 0.0353356890459364, 0.0353356890459364, 0.0353356890459364, 0.0353356890459364, 0.045936395759717315, 0.9434628975265018, 0.9363957597173145, 0.0353356890459364, 0.0353356890459364, 0.0353356890459364, 0.0353356890459364, 0.038869257950530034, 0.038869257950530034, 0.038869257950530034, 0.038869257950530034, 0.038869257950530034, 0.038869257950530034, 0.038869257950530034, 0.038869257950530034, 0.038869257950530034, 0.04240282685512368, 0.045936395759717315, 0.045936395759717315, 0.0636042402826855, 0.12014134275618374, 0.20848056537102475], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Terpene_synth.gap.json b/pfam_gap_rates/Terpene_synth.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..bf0746efaea0f5c091c13333a117232b0ea6926a
--- /dev/null
+++ b/pfam_gap_rates/Terpene_synth.gap.json
@@ -0,0 +1 @@
+{"family": "Terpene_synth", "n_seqs": 955, "length": 223, "gap_rates": [0.6387434554973822, 0.44502617801047123, 0.42513089005235605, 0.41465968586387436, 0.41047120418848165, 0.4094240837696335, 0.4073298429319372, 0.5581151832460733, 0.4544502617801047, 0.41361256544502617, 0.4094240837696335, 0.41465968586387436, 0.4157068062827225, 0.40523560209424087, 0.5884816753926702, 0.6596858638743456, 0.694240837696335, 0.6659685863874345, 0.6418848167539267, 0.6094240837696335, 0.5214659685863874, 0.393717277486911, 0.3633507853403141, 0.32356020942408376, 0.3256544502617801, 0.28900523560209423, 0.2732984293193717, 0.4, 0.25968586387434556, 0.24921465968586387, 0.2450261780104712, 0.23979057591623038, 0.774869109947644, 0.8178010471204189, 0.8921465968586387, 0.8178010471204189, 0.8073298429319372, 0.7643979057591623, 0.22408376963350785, 0.3947643979057592, 0.32146596858638743, 0.3183246073298429, 0.31518324607329845, 0.2136125654450262, 0.21151832460732983, 0.21151832460732983, 0.21675392670157068, 0.9151832460732985, 0.3392670157068063, 0.7853403141361257, 0.8397905759162304, 0.8544502617801047, 0.8439790575916231, 0.8157068062827225, 0.774869109947644, 0.5780104712041885, 0.5162303664921466, 0.41151832460732984, 0.2848167539267016, 0.24397905759162303, 0.16858638743455498, 0.16020942408376965, 0.15916230366492146, 0.15602094240837697, 0.9361256544502617, 0.14450261780104712, 0.1424083769633508, 0.13612565445026178, 0.13089005235602094, 0.12356020942408377, 0.12041884816753927, 0.11832460732984293, 0.11727748691099477, 0.10890052356020942, 0.10575916230366492, 0.10471204188481675, 0.10261780104712041, 0.10261780104712041, 0.10261780104712041, 0.10157068062827225, 0.10052356020942409, 0.10157068062827225, 0.10052356020942409, 0.09738219895287958, 0.09738219895287958, 0.09633507853403141, 0.09738219895287958, 0.09633507853403141, 0.09528795811518324, 0.09424083769633508, 0.09424083769633508, 0.09633507853403141, 0.09738219895287958, 0.09633507853403141, 0.09319371727748692, 0.09633507853403141, 0.10052356020942409, 0.10471204188481675, 0.10890052356020942, 0.1162303664921466, 0.381151832460733, 0.9193717277486911, 0.42408376963350786, 0.6083769633507854, 0.4931937172774869, 0.4837696335078534, 0.4544502617801047, 0.32460732984293195, 0.15078534031413612, 0.7570680628272252, 0.8743455497382199, 0.8858638743455497, 0.7895287958115184, 0.6890052356020943, 0.10157068062827225, 0.10157068062827225, 0.10157068062827225, 0.10261780104712041, 0.10157068062827225, 0.10261780104712041, 0.09842931937172775, 0.09947643979057591, 0.09842931937172775, 0.09633507853403141, 0.09528795811518324, 0.09528795811518324, 0.09633507853403141, 0.09528795811518324, 0.09424083769633508, 0.09738219895287958, 0.09842931937172775, 0.10157068062827225, 0.09842931937172775, 0.10052356020942409, 0.10157068062827225, 0.11099476439790576, 0.1099476439790576, 0.11099476439790576, 0.11518324607329843, 0.11518324607329843, 0.1130890052356021, 0.1099476439790576, 0.16649214659685863, 0.14554973821989528, 0.14345549738219895, 0.14136125654450263, 0.24712041884816754, 0.15392670157068064, 0.2523560209424084, 0.16020942408376965, 0.18219895287958116, 0.17172774869109947, 0.15916230366492146, 0.9392670157068063, 0.9403141361256544, 0.8020942408376963, 0.12041884816753927, 0.10157068062827225, 0.8366492146596859, 0.9329842931937172, 0.8429319371727748, 0.8356020942408376, 0.09947643979057591, 0.10052356020942409, 0.10052356020942409, 0.09738219895287958, 0.09633507853403141, 0.09738219895287958, 0.09424083769633508, 0.09528795811518324, 0.09424083769633508, 0.09319371727748692, 0.09319371727748692, 0.09424083769633508, 0.09424083769633508, 0.09633507853403141, 0.09528795811518324, 0.12879581151832462, 0.09738219895287958, 0.09842931937172775, 0.09842931937172775, 0.8544502617801047, 0.10366492146596859, 0.10261780104712041, 0.10366492146596859, 0.10366492146596859, 0.10471204188481675, 0.10471204188481675, 0.10471204188481675, 0.10575916230366492, 0.10575916230366492, 0.1068062827225131, 0.10785340314136126, 0.10785340314136126, 0.10890052356020942, 0.3863874345549738, 0.11413612565445026, 0.9089005235602095, 0.13507853403141362, 0.1225130890052356, 0.12356020942408377, 0.24083769633507854, 0.21047120418848167, 0.23664921465968586, 0.9340314136125655, 0.7654450261780105, 0.5287958115183246, 0.8837696335078534, 0.8649214659685864, 0.34973821989528797, 0.2554973821989529, 0.2900523560209424, 0.8083769633507853, 0.45654450261780105, 0.2261780104712042, 0.2094240837696335, 0.21047120418848167, 0.21151832460732983, 0.21780104712041884, 0.225130890052356, 0.25654450261780104, 0.2774869109947644, 0.3172774869109948], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Tetraspannin.gap.json b/pfam_gap_rates/Tetraspannin.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..4f1c99ca17edaf332c283ca489b9028e05696acb
--- /dev/null
+++ b/pfam_gap_rates/Tetraspannin.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Tex_N.gap.json b/pfam_gap_rates/Tex_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..1e72cfff45b28bbdb490101cee05976a04c314b1
--- /dev/null
+++ b/pfam_gap_rates/Tex_N.gap.json
@@ -0,0 +1 @@
+{"family": "Tex_N", "n_seqs": 1356, "length": 194, "gap_rates": [0.25958702064896755, 0.11946902654867257, 0.0855457227138643, 0.07079646017699115, 0.05604719764011799, 0.03908554572271387, 0.025811209439528023, 0.02359882005899705, 0.022861356932153392, 0.022123893805309734, 0.021386430678466076, 0.021386430678466076, 0.019174041297935103, 0.017699115044247787, 0.017699115044247787, 0.017699115044247787, 0.01696165191740413, 0.016224188790560472, 0.015486725663716814, 0.015486725663716814, 0.015486725663716814, 0.016224188790560472, 0.015486725663716814, 0.015486725663716814, 0.015486725663716814, 0.01327433628318584, 0.012536873156342183, 0.012536873156342183, 0.01327433628318584, 0.01327433628318584, 0.01327433628318584, 0.01327433628318584, 0.01327433628318584, 0.01327433628318584, 0.011061946902654867, 0.011061946902654867, 0.011061946902654867, 0.011799410029498525, 0.01032448377581121, 0.01032448377581121, 0.011061946902654867, 0.011061946902654867, 0.011061946902654867, 0.01032448377581121, 0.01032448377581121, 0.01032448377581121, 0.01032448377581121, 0.009587020648967551, 0.008849557522123894, 0.008112094395280236, 0.008849557522123894, 0.008849557522123894, 0.009587020648967551, 0.008849557522123894, 0.008849557522123894, 0.008849557522123894, 0.008849557522123894, 0.009587020648967551, 0.009587020648967551, 0.009587020648967551, 0.009587020648967551, 0.009587020648967551, 0.01032448377581121, 0.01032448377581121, 0.01032448377581121, 0.011799410029498525, 0.011799410029498525, 0.012536873156342183, 0.012536873156342183, 0.012536873156342183, 0.01327433628318584, 0.014011799410029498, 0.014749262536873156, 0.01327433628318584, 0.01327433628318584, 0.01327433628318584, 0.01327433628318584, 0.014011799410029498, 0.014011799410029498, 0.014749262536873156, 0.014011799410029498, 0.014011799410029498, 0.014011799410029498, 0.014011799410029498, 0.014011799410029498, 0.014011799410029498, 0.014011799410029498, 0.014011799410029498, 0.014011799410029498, 0.014011799410029498, 0.014011799410029498, 0.014011799410029498, 0.014749262536873156, 0.014749262536873156, 0.014749262536873156, 0.015486725663716814, 0.015486725663716814, 0.015486725663716814, 0.015486725663716814, 0.015486725663716814, 0.016224188790560472, 0.016224188790560472, 0.01696165191740413, 0.01696165191740413, 0.017699115044247787, 0.018436578171091445, 0.018436578171091445, 0.018436578171091445, 0.018436578171091445, 0.019174041297935103, 0.021386430678466076, 0.021386430678466076, 0.02064896755162242, 0.02064896755162242, 0.02064896755162242, 0.01991150442477876, 0.01991150442477876, 0.01991150442477876, 0.01991150442477876, 0.01991150442477876, 0.01991150442477876, 0.01991150442477876, 0.01991150442477876, 0.02064896755162242, 0.021386430678466076, 0.6969026548672567, 0.8974926253687315, 0.7883480825958702, 0.5759587020648967, 0.038348082595870206, 0.2610619469026549, 0.3945427728613569, 0.09292035398230089, 0.04277286135693215, 0.02654867256637168, 0.02359882005899705, 0.022123893805309734, 0.022123893805309734, 0.022123893805309734, 0.02359882005899705, 0.04129793510324484, 0.05088495575221239, 0.29646017699115046, 0.8982300884955752, 0.9321533923303835, 0.946165191740413, 0.9358407079646017, 0.9255162241887905, 0.306047197640118, 0.056784660766961655, 0.04498525073746313, 0.032448377581120944, 0.03171091445427729, 0.029498525073746312, 0.021386430678466076, 0.022123893805309734, 0.02064896755162242, 0.02064896755162242, 0.02064896755162242, 0.02064896755162242, 0.021386430678466076, 0.021386430678466076, 0.021386430678466076, 0.021386430678466076, 0.021386430678466076, 0.021386430678466076, 0.021386430678466076, 0.022123893805309734, 0.022123893805309734, 0.022861356932153392, 0.024336283185840708, 0.025073746312684365, 0.025811209439528023, 0.025811209439528023, 0.025811209439528023, 0.02654867256637168, 0.02728613569321534, 0.02728613569321534, 0.02728613569321534, 0.02728613569321534, 0.028761061946902654, 0.029498525073746312, 0.03171091445427729, 0.035398230088495575, 0.03687315634218289, 0.04056047197640118, 0.04793510324483776, 0.05383480825958702, 0.05825958702064897, 0.06342182890855458, 0.07743362831858407, 0.1172566371681416, 0.2610619469026549, 0.7964601769911505], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Tfb5.gap.json b/pfam_gap_rates/Tfb5.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e6b24ebb9d50f186eb24740f86a9d010736e0f23
--- /dev/null
+++ b/pfam_gap_rates/Tfb5.gap.json
@@ -0,0 +1 @@
+{"family": "Tfb5", "n_seqs": 249, "length": 68, "gap_rates": [0.28112449799196787, 0.25301204819277107, 0.17670682730923695, 0.1686746987951807, 0.15261044176706828, 0.14056224899598393, 0.1285140562248996, 0.12449799196787148, 0.12048192771084337, 0.11244979919678715, 0.10040160642570281, 0.08032128514056225, 0.04417670682730924, 0.04417670682730924, 0.03614457831325301, 0.01606425702811245, 0.012048192771084338, 0.008032128514056224, 0.004016064257028112, 0.004016064257028112, 0.004016064257028112, 0.008032128514056224, 0.004016064257028112, 0.0, 0.0, 0.004016064257028112, 0.21686746987951808, 0.5220883534136547, 0.24096385542168675, 0.21285140562248997, 0.5421686746987951, 0.008032128514056224, 0.004016064257028112, 0.0, 0.0, 0.012048192771084338, 0.01606425702811245, 0.012048192771084338, 0.012048192771084338, 0.01606425702811245, 0.020080321285140562, 0.012048192771084338, 0.012048192771084338, 0.012048192771084338, 0.012048192771084338, 0.012048192771084338, 0.012048192771084338, 0.012048192771084338, 0.012048192771084338, 0.01606425702811245, 0.01606425702811245, 0.01606425702811245, 0.01606425702811245, 0.01606425702811245, 0.01606425702811245, 0.01606425702811245, 0.020080321285140562, 0.028112449799196786, 0.0321285140562249, 0.04417670682730924, 0.05622489959839357, 0.07630522088353414, 0.09236947791164658, 0.11244979919678715, 0.1566265060240964, 0.30522088353413657, 0.40963855421686746, 0.9236947791164659], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Thg1.gap.json b/pfam_gap_rates/Thg1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..682698ca8a91784c40425fdee49776b38c18716c
--- /dev/null
+++ b/pfam_gap_rates/Thg1.gap.json
@@ -0,0 +1 @@
+{"family": "Thg1", "n_seqs": 424, "length": 155, "gap_rates": [0.46462264150943394, 0.2759433962264151, 0.2169811320754717, 0.16745283018867924, 0.1580188679245283, 0.1509433962264151, 0.1509433962264151, 0.14622641509433962, 0.8254716981132075, 0.8254716981132075, 0.1320754716981132, 0.12735849056603774, 0.12735849056603774, 0.12264150943396226, 0.12264150943396226, 0.12028301886792453, 0.12028301886792453, 0.1179245283018868, 0.11084905660377359, 0.09669811320754718, 0.09669811320754718, 0.09669811320754718, 0.09669811320754718, 0.09905660377358491, 0.09905660377358491, 0.10377358490566038, 0.10849056603773585, 0.10613207547169812, 0.10141509433962265, 0.08962264150943396, 0.09198113207547169, 0.08490566037735849, 0.08018867924528301, 0.07783018867924528, 0.07547169811320754, 0.19339622641509435, 0.16981132075471697, 0.9410377358490566, 0.07075471698113207, 0.07075471698113207, 0.06839622641509434, 0.06839622641509434, 0.07311320754716981, 0.06839622641509434, 0.06839622641509434, 0.06839622641509434, 0.0660377358490566, 0.06367924528301887, 0.06367924528301887, 0.0660377358490566, 0.06367924528301887, 0.04481132075471698, 0.04245283018867924, 0.04245283018867924, 0.04245283018867924, 0.04245283018867924, 0.04009433962264151, 0.04245283018867924, 0.04481132075471698, 0.04245283018867924, 0.04245283018867924, 0.04245283018867924, 0.04245283018867924, 0.12028301886792453, 0.9363207547169812, 0.049528301886792456, 0.04009433962264151, 0.03773584905660377, 0.04009433962264151, 0.04009433962264151, 0.04009433962264151, 0.04009433962264151, 0.04245283018867924, 0.04009433962264151, 0.04009433962264151, 0.04009433962264151, 0.04009433962264151, 0.04481132075471698, 0.06367924528301887, 0.0660377358490566, 0.06367924528301887, 0.06132075471698113, 0.06132075471698113, 0.06367924528301887, 0.06367924528301887, 0.12735849056603774, 0.11084905660377359, 0.9080188679245284, 0.9174528301886793, 0.9316037735849056, 0.9080188679245284, 0.9056603773584906, 0.0660377358490566, 0.06132075471698113, 0.06367924528301887, 0.06132075471698113, 0.06367924528301887, 0.06839622641509434, 0.054245283018867926, 0.05188679245283019, 0.05188679245283019, 0.05660377358490566, 0.0589622641509434, 0.05660377358490566, 0.05660377358490566, 0.05660377358490566, 0.06132075471698113, 0.06132075471698113, 0.06132075471698113, 0.06132075471698113, 0.06132075471698113, 0.06132075471698113, 0.06132075471698113, 0.06132075471698113, 0.06132075471698113, 0.06132075471698113, 0.06132075471698113, 0.07075471698113207, 0.07075471698113207, 0.11084905660377359, 0.9009433962264151, 0.9033018867924528, 0.9080188679245284, 0.9221698113207547, 0.9292452830188679, 0.9457547169811321, 0.9363207547169812, 0.9245283018867925, 0.9127358490566038, 0.9080188679245284, 0.9033018867924528, 0.9009433962264151, 0.1391509433962264, 0.25, 0.9198113207547169, 0.9481132075471698, 0.3466981132075472, 0.24056603773584906, 0.19103773584905662, 0.2830188679245283, 0.7735849056603774, 0.8773584905660378, 0.29245283018867924, 0.2688679245283019, 0.09905660377358491, 0.07075471698113207, 0.06367924528301887, 0.06367924528301887, 0.06367924528301887, 0.06367924528301887, 0.0660377358490566, 0.07075471698113207, 0.10141509433962265, 0.16745283018867924, 0.2240566037735849], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/ThiC-associated.gap.json b/pfam_gap_rates/ThiC-associated.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..30aec9cb9294ede0ce7e9c302ecf9590ef3154c7
--- /dev/null
+++ b/pfam_gap_rates/ThiC-associated.gap.json
@@ -0,0 +1 @@
+{"family": "ThiC-associated", "n_seqs": 636, "length": 85, "gap_rates": [0.5172955974842768, 0.1761006289308176, 0.13050314465408805, 0.10062893081761007, 0.08962264150943396, 0.06289308176100629, 0.05817610062893082, 0.050314465408805034, 0.0440251572327044, 0.0440251572327044, 0.03930817610062893, 0.03930817610062893, 0.06761006289308176, 0.07547169811320754, 0.7075471698113207, 0.06761006289308176, 0.0440251572327044, 0.026729559748427674, 0.020440251572327043, 0.01729559748427673, 0.01729559748427673, 0.007861635220125786, 0.007861635220125786, 0.007861635220125786, 0.007861635220125786, 0.007861635220125786, 0.007861635220125786, 0.007861635220125786, 0.007861635220125786, 0.007861635220125786, 0.4606918238993711, 0.5487421383647799, 0.5581761006289309, 0.5235849056603774, 0.5031446540880503, 0.9088050314465409, 0.5534591194968553, 0.6132075471698113, 0.5550314465408805, 0.44654088050314467, 0.9213836477987422, 0.9166666666666666, 0.2358490566037736, 0.21069182389937108, 0.16823899371069181, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.026729559748427674, 0.036163522012578615, 0.03930817610062893, 0.04245283018867924, 0.050314465408805034, 0.03773584905660377, 0.03930817610062893, 0.036163522012578615, 0.036163522012578615, 0.0330188679245283, 0.026729559748427674, 0.01729559748427673, 0.0, 0.0, 0.0, 0.0, 0.012578616352201259, 0.009433962264150943, 0.01729559748427673, 0.009433962264150943, 0.009433962264150943, 0.020440251572327043, 0.03773584905660377, 0.04874213836477988, 0.05188679245283019, 0.05660377358490566, 0.13364779874213836, 0.15251572327044025, 0.3018867924528302], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/ThiG.gap.json b/pfam_gap_rates/ThiG.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..90fe3c9e21bb06d17a36b08e63acb56d162496b7
--- /dev/null
+++ b/pfam_gap_rates/ThiG.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/ThiP_synth.gap.json b/pfam_gap_rates/ThiP_synth.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..00c8b997954f978498e5f848e5d6f5c1ac7e3b59
--- /dev/null
+++ b/pfam_gap_rates/ThiP_synth.gap.json
@@ -0,0 +1 @@
+{"family": "ThiP_synth", "n_seqs": 104, "length": 175, "gap_rates": [0.5576923076923077, 0.21153846153846154, 0.16346153846153846, 0.125, 0.08653846153846154, 0.08653846153846154, 0.07692307692307693, 0.0673076923076923, 0.0673076923076923, 0.0673076923076923, 0.0673076923076923, 0.0673076923076923, 0.0673076923076923, 0.25961538461538464, 0.8942307692307693, 0.17307692307692307, 0.0673076923076923, 0.038461538461538464, 0.028846153846153848, 0.028846153846153848, 0.028846153846153848, 0.028846153846153848, 0.028846153846153848, 0.019230769230769232, 0.009615384615384616, 0.009615384615384616, 0.009615384615384616, 0.009615384615384616, 0.009615384615384616, 0.009615384615384616, 0.009615384615384616, 0.009615384615384616, 0.8653846153846154, 0.8653846153846154, 0.028846153846153848, 0.028846153846153848, 0.019230769230769232, 0.019230769230769232, 0.019230769230769232, 0.009615384615384616, 0.009615384615384616, 0.009615384615384616, 0.019230769230769232, 0.028846153846153848, 0.028846153846153848, 0.038461538461538464, 0.028846153846153848, 0.028846153846153848, 0.028846153846153848, 0.028846153846153848, 0.028846153846153848, 0.028846153846153848, 0.019230769230769232, 0.9423076923076923, 0.019230769230769232, 0.019230769230769232, 0.009615384615384616, 0.009615384615384616, 0.019230769230769232, 0.009615384615384616, 0.009615384615384616, 0.009615384615384616, 0.009615384615384616, 0.009615384615384616, 0.009615384615384616, 0.009615384615384616, 0.009615384615384616, 0.009615384615384616, 0.009615384615384616, 0.009615384615384616, 0.009615384615384616, 0.009615384615384616, 0.009615384615384616, 0.009615384615384616, 0.009615384615384616, 0.009615384615384616, 0.009615384615384616, 0.019230769230769232, 0.038461538461538464, 0.038461538461538464, 0.028846153846153848, 0.019230769230769232, 0.019230769230769232, 0.019230769230769232, 0.019230769230769232, 0.019230769230769232, 0.019230769230769232, 0.019230769230769232, 0.009615384615384616, 0.009615384615384616, 0.009615384615384616, 0.009615384615384616, 0.009615384615384616, 0.009615384615384616, 0.009615384615384616, 0.009615384615384616, 0.009615384615384616, 0.009615384615384616, 0.009615384615384616, 0.009615384615384616, 0.009615384615384616, 0.009615384615384616, 0.009615384615384616, 0.057692307692307696, 0.04807692307692308, 0.019230769230769232, 0.009615384615384616, 0.019230769230769232, 0.009615384615384616, 0.009615384615384616, 0.009615384615384616, 0.009615384615384616, 0.009615384615384616, 0.009615384615384616, 0.009615384615384616, 0.009615384615384616, 0.009615384615384616, 0.009615384615384616, 0.019230769230769232, 0.3557692307692308, 0.5288461538461539, 0.5673076923076923, 0.5480769230769231, 0.5, 0.375, 0.2403846153846154, 0.21153846153846154, 0.16346153846153846, 0.1346153846153846, 0.09615384615384616, 0.057692307692307696, 0.019230769230769232, 0.019230769230769232, 0.019230769230769232, 0.019230769230769232, 0.019230769230769232, 0.019230769230769232, 0.019230769230769232, 0.028846153846153848, 0.875, 0.9423076923076923, 0.3173076923076923, 0.17307692307692307, 0.10576923076923077, 0.04807692307692308, 0.028846153846153848, 0.028846153846153848, 0.028846153846153848, 0.028846153846153848, 0.028846153846153848, 0.028846153846153848, 0.028846153846153848, 0.028846153846153848, 0.028846153846153848, 0.028846153846153848, 0.038461538461538464, 0.038461538461538464, 0.038461538461538464, 0.028846153846153848, 0.028846153846153848, 0.028846153846153848, 0.028846153846153848, 0.028846153846153848, 0.028846153846153848, 0.028846153846153848, 0.028846153846153848, 0.028846153846153848, 0.028846153846153848, 0.028846153846153848, 0.028846153846153848, 0.028846153846153848, 0.028846153846153848, 0.038461538461538464, 0.057692307692307696, 0.27884615384615385], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Thiol-ester_cl.gap.json b/pfam_gap_rates/Thiol-ester_cl.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..9acdb134be2882e3c35f594fdf096a1774c45e73
--- /dev/null
+++ b/pfam_gap_rates/Thiol-ester_cl.gap.json
@@ -0,0 +1 @@
+{"family": "Thiol-ester_cl", "n_seqs": 615, "length": 30, "gap_rates": [0.4894308943089431, 0.26178861788617885, 0.16910569105691056, 0.0959349593495935, 0.06341463414634146, 0.05203252032520325, 0.0065040650406504065, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0016260162601626016, 0.004878048780487805, 0.0065040650406504065, 0.0065040650406504065, 0.01951219512195122, 0.026016260162601626, 0.04390243902439024, 0.11544715447154472, 0.2, 0.25691056910569104, 0.3024390243902439, 0.33170731707317075], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/ThuA.gap.json b/pfam_gap_rates/ThuA.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ecc306623d82a30c08873643617112da690e59ef
--- /dev/null
+++ b/pfam_gap_rates/ThuA.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Tnp_DNA_bind.gap.json b/pfam_gap_rates/Tnp_DNA_bind.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..10c59f24c0777d3a6bbecfbd7d3b5189e0e3f03c
--- /dev/null
+++ b/pfam_gap_rates/Tnp_DNA_bind.gap.json
@@ -0,0 +1 @@
+{"family": "Tnp_DNA_bind", "n_seqs": 162, "length": 59, "gap_rates": [0.4876543209876543, 0.19135802469135801, 0.19135802469135801, 0.11728395061728394, 0.1111111111111111, 0.10493827160493827, 0.08641975308641975, 0.06790123456790123, 0.04938271604938271, 0.04938271604938271, 0.043209876543209874, 0.043209876543209874, 0.030864197530864196, 0.030864197530864196, 0.030864197530864196, 0.030864197530864196, 0.030864197530864196, 0.024691358024691357, 0.024691358024691357, 0.024691358024691357, 0.024691358024691357, 0.018518518518518517, 0.018518518518518517, 0.006172839506172839, 0.006172839506172839, 0.0, 0.006172839506172839, 0.006172839506172839, 0.0, 0.0, 0.0, 0.0, 0.0, 0.006172839506172839, 0.006172839506172839, 0.012345679012345678, 0.018518518518518517, 0.024691358024691357, 0.037037037037037035, 0.024691358024691357, 0.05555555555555555, 0.9197530864197531, 0.030864197530864196, 0.030864197530864196, 0.037037037037037035, 0.037037037037037035, 0.037037037037037035, 0.043209876543209874, 0.043209876543209874, 0.043209876543209874, 0.043209876543209874, 0.043209876543209874, 0.04938271604938271, 0.06790123456790123, 0.08641975308641975, 0.08641975308641975, 0.09259259259259259, 0.20987654320987653, 0.345679012345679], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/TonB_2.gap.json b/pfam_gap_rates/TonB_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..22d33da3312219f966c3ca2071212dd585ffbc1b
--- /dev/null
+++ b/pfam_gap_rates/TonB_2.gap.json
@@ -0,0 +1 @@
+{"family": "TonB_2", "n_seqs": 614, "length": 96, "gap_rates": [0.9299674267100977, 0.4755700325732899, 0.2785016286644951, 0.1986970684039088, 0.18566775244299674, 0.15146579804560262, 0.13029315960912052, 0.09771986970684039, 0.09283387622149837, 0.08794788273615635, 0.08143322475570032, 0.07654723127035831, 0.0732899022801303, 0.07166123778501629, 0.07654723127035831, 0.9169381107491856, 0.8957654723127035, 0.07654723127035831, 0.21661237785016288, 0.15798045602605862, 0.08469055374592833, 0.9104234527687296, 0.08469055374592833, 0.06677524429967427, 0.8175895765472313, 0.9120521172638436, 0.6644951140065146, 0.13517915309446255, 0.03257328990228013, 0.029315960912052116, 0.026058631921824105, 0.02280130293159609, 0.017915309446254073, 0.014657980456026058, 0.006514657980456026, 0.006514657980456026, 0.006514657980456026, 0.003257328990228013, 0.003257328990228013, 0.003257328990228013, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.04560260586319218, 0.9446254071661238, 0.004885993485342019, 0.0016286644951140066, 0.0016286644951140066, 0.0016286644951140066, 0.008143322475570033, 0.008143322475570033, 0.004885993485342019, 0.006514657980456026, 0.006514657980456026, 0.008143322475570033, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0016286644951140066, 0.008143322475570033, 0.008143322475570033, 0.011400651465798045, 0.8990228013029316, 0.9429967426710097, 0.8745928338762216, 0.013029315960912053, 0.016286644951140065, 0.03420195439739414, 0.02768729641693811, 0.029315960912052116, 0.03908794788273615, 0.15472312703583063, 0.06188925081433225, 0.08957654723127036, 0.754071661237785, 0.4771986970684039, 0.34039087947882735, 0.26384364820846906, 0.32084690553745926, 0.38925081433224756, 0.4495114006514658, 0.46579804560260585, 0.47068403908794787, 0.49185667752442996, 0.5342019543973942, 0.5635179153094463, 0.6286644951140065, 0.6758957654723127], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Toprim_N.gap.json b/pfam_gap_rates/Toprim_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..6e68b7c1414a252589d6d7efeba32ec93f5920e9
--- /dev/null
+++ b/pfam_gap_rates/Toprim_N.gap.json
@@ -0,0 +1 @@
+{"family": "Toprim_N", "n_seqs": 2201, "length": 141, "gap_rates": [0.40708768741481144, 0.23625624716038165, 0.19127669241253975, 0.1626533393911858, 0.12812358019082234, 0.10495229441163108, 0.08905043162199, 0.08223534756928669, 0.07542026351658337, 0.07133121308496138, 0.0667878237164925, 0.8591549295774648, 0.2149023171285779, 0.18945933666515222, 0.9359382099045889, 0.03044070876874148, 0.025442980463425715, 0.02407996365288505, 0.023625624716038164, 0.023171285779191277, 0.023171285779191277, 0.9295774647887324, 0.023625624716038164, 0.023171285779191277, 0.02407996365288505, 0.02407996365288505, 0.0222626079054975, 0.0222626079054975, 0.023171285779191277, 0.02271694684234439, 0.02271694684234439, 0.02271694684234439, 0.02271694684234439, 0.02271694684234439, 0.021808268968650613, 0.02044525215810995, 0.02044525215810995, 0.019990913221263062, 0.019990913221263062, 0.019990913221263062, 0.0222626079054975, 0.020899591094956836, 0.1258518855065879, 0.04497955474784189, 0.029532030895047707, 0.023171285779191277, 0.029532030895047707, 0.025897319400272602, 0.026351658337119492, 0.027260336210813266, 0.028169014084507043, 0.03498409813721036, 0.9382099045888233, 0.10540663334847797, 0.08314402544298047, 0.033621081326669695, 0.03044070876874148, 0.030895047705588367, 0.0222626079054975, 0.019990913221263062, 0.019990913221263062, 0.019082235347569285, 0.0186278964107224, 0.0186278964107224, 0.019082235347569285, 0.019082235347569285, 0.019990913221263062, 0.019990913221263062, 0.019990913221263062, 0.02044525215810995, 0.04679691049522944, 0.3016810540663335, 0.8982280781462971, 0.9491140390731486, 0.9373012267151295, 0.6646978646069969, 0.07223989095865516, 0.05452067242162653, 0.04270786006360745, 0.02407996365288505, 0.015447523852794184, 0.014993184915947297, 0.014084507042253521, 0.014084507042253521, 0.014084507042253521, 0.014084507042253521, 0.014084507042253521, 0.011812812358019082, 0.011812812358019082, 0.011812812358019082, 0.011812812358019082, 0.01226715129486597, 0.0222626079054975, 0.013175829168559746, 0.013175829168559746, 0.01226715129486597, 0.01226715129486597, 0.011358473421172195, 0.011358473421172195, 0.011358473421172195, 0.011358473421172195, 0.011812812358019082, 0.011812812358019082, 0.01226715129486597, 0.01226715129486597, 0.012721490231712857, 0.8241708314402544, 0.9318491594729669, 0.9413902771467515, 0.8968650613357565, 0.6188096319854611, 0.025442980463425715, 0.019082235347569285, 0.01817355747387551, 0.017264879600181735, 0.019082235347569285, 0.408905043162199, 0.02044525215810995, 0.019990913221263062, 0.023171285779191277, 0.024988641526578828, 0.02680599727396638, 0.027260336210813266, 0.029077691958200817, 0.03180372557928214, 0.03134938664243526, 0.03180372557928214, 0.03180372557928214, 0.03134938664243526, 0.03180372557928214, 0.03225806451612903, 0.03271240345297592, 0.033166742389822805, 0.033166742389822805, 0.033166742389822805, 0.033166742389822805, 0.03452975920036347, 0.04906860517946388, 0.08995910949568378, 0.17810086324398, 0.7024079963652885], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/TraB.gap.json b/pfam_gap_rates/TraB.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b690a9129449109f24e07c5cf0084bf2f7076748
--- /dev/null
+++ b/pfam_gap_rates/TraB.gap.json
@@ -0,0 +1 @@
+{"family": "TraB", "n_seqs": 1016, "length": 341, "gap_rates": [0.6998031496062992, 0.5137795275590551, 0.44586614173228345, 0.4124015748031496, 0.3720472440944882, 0.33267716535433073, 0.30413385826771655, 0.9350393700787402, 0.23622047244094488, 0.19586614173228348, 0.17519685039370078, 0.16633858267716536, 0.8868110236220472, 0.8228346456692913, 0.17913385826771652, 0.13484251968503938, 0.12992125984251968, 0.12893700787401574, 0.12893700787401574, 0.12893700787401574, 0.1279527559055118, 0.1279527559055118, 0.1279527559055118, 0.12696850393700787, 0.12598425196850394, 0.1309055118110236, 0.1309055118110236, 0.1279527559055118, 0.12598425196850394, 0.9419291338582677, 0.13877952755905512, 0.12696850393700787, 0.125, 0.11811023622047244, 0.11614173228346457, 0.11515748031496063, 0.11515748031496063, 0.1171259842519685, 0.43208661417322836, 0.47244094488188976, 0.15846456692913385, 0.11220472440944881, 0.11122047244094488, 0.11122047244094488, 0.11122047244094488, 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\ No newline at end of file
diff --git a/pfam_gap_rates/Trans_reg_C.gap.json b/pfam_gap_rates/Trans_reg_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..3e71df8d53cfb8141dbc9ef5b3024294079e0271
--- /dev/null
+++ b/pfam_gap_rates/Trans_reg_C.gap.json
@@ -0,0 +1 @@
+{"family": "Trans_reg_C", "n_seqs": 5000, "length": 78, "gap_rates": [0.6346, 0.3334, 0.1886, 0.0942, 0.0676, 0.0578, 0.0418, 0.0288, 0.0196, 0.0152, 0.0108, 0.0082, 0.0064, 0.0054, 0.005, 0.0044, 0.0044, 0.0032, 0.0034, 0.0032, 0.0036, 0.0026, 0.0034, 0.003, 0.0026, 0.002, 0.002, 0.0022, 0.002, 0.0016, 0.002, 0.0036, 0.0044, 0.0052, 0.0066, 0.005, 0.007, 0.0064, 0.012, 0.8642, 0.0816, 0.0136, 0.0066, 0.0032, 0.0028, 0.003, 0.003, 0.003, 0.0028, 0.0028, 0.0028, 0.0028, 0.003, 0.003, 0.0032, 0.0032, 0.004, 0.0042, 0.0046, 0.0052, 0.3312, 0.2588, 0.3566, 0.1976, 0.1382, 0.0876, 0.0386, 0.0312, 0.031, 0.033, 0.035, 0.0358, 0.0372, 0.0388, 0.0362, 0.041, 0.0494, 0.2184], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Transglut_core3.gap.json b/pfam_gap_rates/Transglut_core3.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..14d6530ec1455bd483ce38f8b1d080316ffb746d
--- /dev/null
+++ b/pfam_gap_rates/Transglut_core3.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Transgly_assoc.gap.json b/pfam_gap_rates/Transgly_assoc.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..135be60cfa6fbe58676b42793d5ec62cbafd439b
--- /dev/null
+++ b/pfam_gap_rates/Transgly_assoc.gap.json
@@ -0,0 +1 @@
+{"family": "Transgly_assoc", "n_seqs": 1150, "length": 55, "gap_rates": [0.20347826086956522, 0.028695652173913042, 0.0052173913043478265, 0.004347826086956522, 0.0026086956521739132, 0.0026086956521739132, 0.0017391304347826088, 0.0017391304347826088, 0.0017391304347826088, 0.0008695652173913044, 0.0008695652173913044, 0.0008695652173913044, 0.0008695652173913044, 0.0008695652173913044, 0.0017391304347826088, 0.0017391304347826088, 0.0034782608695652175, 0.0026086956521739132, 0.0026086956521739132, 0.0017391304347826088, 0.7704347826086957, 0.9426086956521739, 0.8878260869565218, 0.5521739130434783, 0.4217391304347826, 0.2026086956521739, 0.19391304347826088, 0.18347826086956523, 0.1826086956521739, 0.0, 0.0, 0.0, 0.0, 0.0, 0.8121739130434783, 0.811304347826087, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0008695652173913044, 0.0008695652173913044, 0.0008695652173913044, 0.0017391304347826088, 0.0017391304347826088, 0.0034782608695652175, 0.010434782608695653, 0.023478260869565216, 0.04695652173913043, 0.07391304347826087, 0.18434782608695652, 0.5269565217391304], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Transketolase_N.gap.json b/pfam_gap_rates/Transketolase_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..7db983aeea4aa451705c7480c0815baecae758cd
--- /dev/null
+++ b/pfam_gap_rates/Transketolase_N.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Transposase_28.gap.json b/pfam_gap_rates/Transposase_28.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d2b5906a6e1b915085521c4bca1a0bb5a61318af
--- /dev/null
+++ b/pfam_gap_rates/Transposase_28.gap.json
@@ -0,0 +1 @@
+{"family": "Transposase_28", "n_seqs": 428, "length": 194, "gap_rates": [0.4953271028037383, 0.4929906542056075, 0.49065420560747663, 0.4883177570093458, 0.4883177570093458, 0.48598130841121495, 0.48364485981308414, 0.48364485981308414, 0.6728971962616822, 0.45794392523364486, 0.45560747663551404, 0.45560747663551404, 0.45093457943925236, 0.45093457943925236, 0.4485981308411215, 0.4485981308411215, 0.4485981308411215, 0.4485981308411215, 0.4485981308411215, 0.4439252336448598, 0.441588785046729, 0.6378504672897196, 0.6214953271028038, 0.5864485981308412, 0.38317757009345793, 0.3808411214953271, 0.3808411214953271, 0.37616822429906543, 0.3598130841121495, 0.3574766355140187, 0.3574766355140187, 0.3691588785046729, 0.352803738317757, 0.37383177570093457, 0.37850467289719625, 0.3808411214953271, 0.3808411214953271, 0.35514018691588783, 0.3411214953271028, 0.3364485981308411, 0.3177570093457944, 0.7336448598130841, 0.7897196261682243, 0.7897196261682243, 0.7336448598130841, 0.2967289719626168, 0.2757009345794392, 0.2383177570093458, 0.2383177570093458, 0.23598130841121495, 0.22429906542056074, 0.21728971962616822, 0.2102803738317757, 0.20794392523364486, 0.2102803738317757, 0.20327102803738317, 0.5023364485981309, 0.17757009345794392, 0.17523364485981308, 0.1705607476635514, 0.16822429906542055, 0.17990654205607476, 0.17523364485981308, 0.17523364485981308, 0.17757009345794392, 0.17757009345794392, 0.17289719626168223, 0.14953271028037382, 0.14719626168224298, 0.14953271028037382, 0.14719626168224298, 0.14719626168224298, 0.14485981308411214, 0.14485981308411214, 0.14018691588785046, 0.14018691588785046, 0.1378504672897196, 0.1378504672897196, 0.1425233644859813, 0.1378504672897196, 0.13551401869158877, 0.13317757009345793, 0.1308411214953271, 0.12850467289719625, 0.12850467289719625, 0.12383177570093458, 0.1261682242990654, 0.1191588785046729, 0.11682242990654206, 0.10981308411214953, 0.10981308411214953, 0.10747663551401869, 0.10747663551401869, 0.10514018691588785, 0.10514018691588785, 0.10514018691588785, 0.10747663551401869, 0.10747663551401869, 0.10514018691588785, 0.102803738317757, 0.10046728971962617, 0.09345794392523364, 0.09345794392523364, 0.09579439252336448, 0.09813084112149532, 0.10046728971962617, 0.10747663551401869, 0.11214953271028037, 0.10514018691588785, 0.11214953271028037, 0.2266355140186916, 0.10747663551401869, 0.10514018691588785, 0.11448598130841121, 0.12149532710280374, 0.1261682242990654, 0.13317757009345793, 0.13317757009345793, 0.13551401869158877, 0.13551401869158877, 0.13551401869158877, 0.13551401869158877, 0.1378504672897196, 0.14719626168224298, 0.14018691588785046, 0.15186915887850466, 0.16355140186915887, 0.14485981308411214, 0.1542056074766355, 0.1658878504672897, 0.735981308411215, 0.9252336448598131, 0.927570093457944, 0.9299065420560748, 0.9299065420560748, 0.9299065420560748, 0.927570093457944, 0.7383177570093458, 0.7289719626168224, 0.19626168224299065, 0.21261682242990654, 0.21261682242990654, 0.22429906542056074, 0.22897196261682243, 0.2266355140186916, 0.21728971962616822, 0.2266355140186916, 0.22429906542056074, 0.22429906542056074, 0.2266355140186916, 0.22429906542056074, 0.22429906542056074, 0.22429906542056074, 0.2336448598130841, 0.2383177570093458, 0.24532710280373832, 0.24532710280373832, 0.24065420560747663, 0.2383177570093458, 0.2383177570093458, 0.2383177570093458, 0.2383177570093458, 0.2383177570093458, 0.24299065420560748, 0.2570093457943925, 0.2523364485981308, 0.24532710280373832, 0.24299065420560748, 0.24766355140186916, 0.2523364485981308, 0.9485981308411215, 0.2570093457943925, 0.2570093457943925, 0.2570093457943925, 0.2570093457943925, 0.2546728971962617, 0.25934579439252337, 0.26635514018691586, 0.26869158878504673, 0.26869158878504673, 0.616822429906542, 0.6448598130841121, 0.616822429906542, 0.3341121495327103, 0.3901869158878505, 0.40654205607476634, 0.4182242990654206, 0.42990654205607476, 0.45093457943925236, 0.45794392523364486, 0.4602803738317757, 0.46261682242990654, 0.4719626168224299, 0.4929906542056075], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/TrbI.gap.json b/pfam_gap_rates/TrbI.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..4c260d5b9b0628cfb2bde8be02c0e0fc635649bf
--- /dev/null
+++ b/pfam_gap_rates/TrbI.gap.json
@@ -0,0 +1 @@
+{"family": "TrbI", "n_seqs": 557, "length": 219, "gap_rates": [0.5834829443447038, 0.17953321364452424, 0.13464991023339318, 0.11131059245960502, 0.13464991023339318, 0.0933572710951526, 0.07719928186714542, 0.07001795332136446, 0.06822262118491922, 0.06642728904847396, 0.06642728904847396, 0.06642728904847396, 0.06283662477558348, 0.06104129263913824, 0.06283662477558348, 0.06283662477558348, 0.06104129263913824, 0.06104129263913824, 0.059245960502693, 0.059245960502693, 0.05745062836624776, 0.05745062836624776, 0.06463195691202872, 0.9228007181328546, 0.940754039497307, 0.9353680430879713, 0.9120287253141831, 0.06283662477558348, 0.059245960502693, 0.2244165170556553, 0.06822262118491922, 0.0843806104129264, 0.0843806104129264, 0.0807899461400359, 0.07540394973070018, 0.07719928186714542, 0.07360861759425494, 0.4542190305206463, 0.0807899461400359, 0.05206463195691203, 0.04847396768402154, 0.05026929982046679, 0.05026929982046679, 0.07899461400359066, 0.07719928186714542, 0.07540394973070018, 0.29443447037701975, 0.04847396768402154, 0.0466786355475763, 0.04488330341113106, 0.04488330341113106, 0.04488330341113106, 0.04488330341113106, 0.1741472172351885, 0.04308797127468582, 0.05745062836624776, 0.05385996409335727, 0.05026929982046679, 0.05026929982046679, 0.8240574506283662, 0.8366247755834829, 0.7737881508078994, 0.11131059245960502, 0.09156193895870736, 0.07001795332136446, 0.06104129263913824, 0.05385996409335727, 0.7917414721723519, 0.8025134649910234, 0.7719928186714542, 0.08976660682226212, 0.06822262118491922, 0.05026929982046679, 0.04488330341113106, 0.03770197486535009, 0.03411131059245961, 0.03411131059245961, 0.03411131059245961, 0.03231597845601436, 0.03411131059245961, 0.03411131059245961, 0.03590664272890485, 0.03590664272890485, 0.8096947935368043, 0.947935368043088, 0.770197486535009, 0.03411131059245961, 0.03590664272890485, 0.03231597845601436, 0.9371633752244165, 0.03052064631956912, 0.02872531418312388, 0.026929982046678635, 0.026929982046678635, 0.026929982046678635, 0.7737881508078994, 0.31597845601436264, 0.8438061041292639, 0.03231597845601436, 0.03231597845601436, 0.19569120287253142, 0.06822262118491922, 0.025134649910233394, 0.02333931777378815, 0.02872531418312388, 0.03770197486535009, 0.025134649910233394, 0.026929982046678635, 0.017953321364452424, 0.017953321364452424, 0.017953321364452424, 0.017953321364452424, 0.02154398563734291, 0.025134649910233394, 0.8078994614003591, 0.025134649910233394, 0.02872531418312388, 0.03052064631956912, 0.03052064631956912, 0.1813285457809695, 0.02872531418312388, 0.02872531418312388, 0.02872531418312388, 0.026929982046678635, 0.02872531418312388, 0.026929982046678635, 0.026929982046678635, 0.025134649910233394, 0.025134649910233394, 0.02333931777378815, 0.02333931777378815, 0.025134649910233394, 0.02333931777378815, 0.02333931777378815, 0.025134649910233394, 0.026929982046678635, 0.03052064631956912, 0.03231597845601436, 0.09156193895870736, 0.08617594254937164, 0.08797127468581688, 0.05026929982046679, 0.04308797127468582, 0.03949730700179533, 0.20287253141831238, 0.21005385996409337, 0.236983842010772, 0.2333931777378815, 0.2495511669658887, 0.31956912028725315, 0.42010771992818674, 0.4631956912028725, 0.5152603231597845, 0.5152603231597845, 0.6427289048473968, 0.6642728904847397, 0.6929982046678635, 0.8061041292639138, 0.8617594254937163, 0.9228007181328546, 0.940754039497307, 0.8904847396768402, 0.8240574506283662, 0.718132854578097, 0.6696588868940754, 0.6552962298025135, 0.6283662477558348, 0.4703770197486535, 0.28186714542190305, 0.23159784560143626, 0.19389587073608616, 0.17773788150807898, 0.11490125673249552, 0.10233393177737882, 0.07540394973070018, 0.05565529622980251, 0.04847396768402154, 0.0466786355475763, 0.0466786355475763, 0.04308797127468582, 0.04488330341113106, 0.04308797127468582, 0.04129263913824058, 0.04129263913824058, 0.04308797127468582, 0.9497307001795332, 0.05206463195691203, 0.04488330341113106, 0.04847396768402154, 0.04488330341113106, 0.04488330341113106, 0.04308797127468582, 0.04308797127468582, 0.04129263913824058, 0.059245960502693, 0.05026929982046679, 0.0466786355475763, 0.0466786355475763, 0.04129263913824058, 0.04129263913824058, 0.04308797127468582, 0.04308797127468582, 0.04308797127468582, 0.04308797127468582, 0.04308797127468582, 0.04308797127468582, 0.04308797127468582, 0.0466786355475763, 0.0466786355475763, 0.0466786355475763, 0.0466786355475763, 0.0466786355475763, 0.05026929982046679, 0.06463195691202872, 0.07360861759425494, 0.08797127468581688, 0.118491921005386, 0.24236983842010773, 0.4757630161579892], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Trigger_N.gap.json b/pfam_gap_rates/Trigger_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..bb3d3d276b73ccfbc00bca8f3fd3c387c1710aa7
--- /dev/null
+++ b/pfam_gap_rates/Trigger_N.gap.json
@@ -0,0 +1 @@
+{"family": "Trigger_N", "n_seqs": 2228, "length": 156, "gap_rates": [0.2894973070017953, 0.22800718132854578, 0.18447037701974867, 0.13464991023339318, 0.10278276481149012, 0.08168761220825853, 0.06867145421903052, 0.06328545780969479, 0.05430879712746858, 0.05026929982046679, 0.050718132854578095, 0.02827648114901257, 0.024685816876122084, 0.02154398563734291, 0.019299820466786355, 0.017055655296229804, 0.01660682226211849, 0.01570915619389587, 0.01526032315978456, 0.01436265709156194, 0.01481149012567325, 0.01436265709156194, 0.013464991023339317, 0.013464991023339317, 0.013016157989228007, 0.012567324955116697, 0.012118491921005385, 0.012118491921005385, 0.011220825852782765, 0.009874326750448833, 0.009425493716337522, 0.009425493716337522, 0.009874326750448833, 0.009874326750448833, 0.009874326750448833, 0.010771992818671455, 0.009425493716337522, 0.009874326750448833, 0.009425493716337522, 0.008976660682226212, 0.008527827648114902, 0.00807899461400359, 0.008527827648114902, 0.008527827648114902, 0.011669658886894075, 0.009425493716337522, 0.008527827648114902, 0.00718132854578097, 0.00763016157989228, 0.00807899461400359, 0.00718132854578097, 0.00718132854578097, 0.00718132854578097, 0.00718132854578097, 0.006732495511669659, 0.006732495511669659, 0.006732495511669659, 0.010771992818671455, 0.009425493716337522, 0.008976660682226212, 0.008976660682226212, 0.4268402154398564, 0.008527827648114902, 0.006732495511669659, 0.0062836624775583485, 0.0062836624775583485, 0.0062836624775583485, 0.0058348294434470375, 0.005385996409335727, 0.005385996409335727, 0.004937163375224416, 0.004937163375224416, 0.005385996409335727, 0.004937163375224416, 0.004488330341113106, 0.004488330341113106, 0.004488330341113106, 0.0058348294434470375, 0.004039497307001795, 0.003590664272890485, 0.004039497307001795, 0.004937163375224416, 0.0058348294434470375, 0.0058348294434470375, 0.009425493716337522, 0.009425493716337522, 0.00763016157989228, 0.00763016157989228, 0.0210951526032316, 0.018850987432675045, 0.013016157989228007, 0.012567324955116697, 0.011220825852782765, 0.8105924596050269, 0.06822262118491922, 0.018850987432675045, 0.01481149012567325, 0.690754039497307, 0.8406642728904847, 0.9272890484739676, 0.8868940754039497, 0.7661579892280072, 0.25, 0.01615798922800718, 0.033662477558348294, 0.02244165170556553, 0.9470377019748654, 0.9286355475763016, 0.018850987432675045, 0.02827648114901257, 0.9461400359066428, 0.0210951526032316, 0.00807899461400359, 0.00807899461400359, 0.00807899461400359, 0.008527827648114902, 0.008527827648114902, 0.008527827648114902, 0.008527827648114902, 0.011220825852782765, 0.013016157989228007, 0.019299820466786355, 0.02154398563734291, 0.02199281867145422, 0.02423698384201077, 0.02423698384201077, 0.025134649910233394, 0.07540394973070018, 0.027378815080789945, 0.947935368043088, 0.02827648114901257, 0.02827648114901257, 0.03007181328545781, 0.947935368043088, 0.033662477558348294, 0.042639138240574505, 0.04533213644524237, 0.04533213644524237, 0.057001795332136444, 0.059694793536804305, 0.06193895870736086, 0.06238779174147217, 0.06283662477558348, 0.06373429084380611, 0.06508078994614004, 0.0677737881508079, 0.07046678635547576, 0.072262118491921, 0.07540394973070018, 0.07764811490125673, 0.0807899461400359, 0.09111310592459605, 0.1059245960502693, 0.1319569120287253, 0.2921903052064632, 0.7131956912028725], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/TrpP.gap.json b/pfam_gap_rates/TrpP.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ed889becd5e229da40f357930bb4c136b460b6a8
--- /dev/null
+++ b/pfam_gap_rates/TrpP.gap.json
@@ -0,0 +1 @@
+{"family": "TrpP", "n_seqs": 104, "length": 176, "gap_rates": [0.25, 0.08653846153846154, 0.057692307692307696, 0.04807692307692308, 0.038461538461538464, 0.038461538461538464, 0.028846153846153848, 0.028846153846153848, 0.028846153846153848, 0.028846153846153848, 0.028846153846153848, 0.028846153846153848, 0.028846153846153848, 0.028846153846153848, 0.028846153846153848, 0.028846153846153848, 0.028846153846153848, 0.028846153846153848, 0.028846153846153848, 0.04807692307692308, 0.028846153846153848, 0.019230769230769232, 0.019230769230769232, 0.019230769230769232, 0.038461538461538464, 0.09615384615384616, 0.04807692307692308, 0.009615384615384616, 0.009615384615384616, 0.009615384615384616, 0.009615384615384616, 0.009615384615384616, 0.009615384615384616, 0.009615384615384616, 0.009615384615384616, 0.009615384615384616, 0.009615384615384616, 0.009615384615384616, 0.009615384615384616, 0.009615384615384616, 0.009615384615384616, 0.009615384615384616, 0.009615384615384616, 0.009615384615384616, 0.009615384615384616, 0.9326923076923077, 0.009615384615384616, 0.009615384615384616, 0.009615384615384616, 0.009615384615384616, 0.009615384615384616, 0.009615384615384616, 0.009615384615384616, 0.009615384615384616, 0.009615384615384616, 0.009615384615384616, 0.009615384615384616, 0.009615384615384616, 0.009615384615384616, 0.009615384615384616, 0.009615384615384616, 0.009615384615384616, 0.009615384615384616, 0.009615384615384616, 0.009615384615384616, 0.009615384615384616, 0.009615384615384616, 0.009615384615384616, 0.009615384615384616, 0.009615384615384616, 0.009615384615384616, 0.009615384615384616, 0.019230769230769232, 0.019230769230769232, 0.028846153846153848, 0.009615384615384616, 0.009615384615384616, 0.009615384615384616, 0.009615384615384616, 0.009615384615384616, 0.009615384615384616, 0.009615384615384616, 0.009615384615384616, 0.009615384615384616, 0.009615384615384616, 0.009615384615384616, 0.009615384615384616, 0.009615384615384616, 0.009615384615384616, 0.009615384615384616, 0.009615384615384616, 0.009615384615384616, 0.028846153846153848, 0.019230769230769232, 0.019230769230769232, 0.38461538461538464, 0.46153846153846156, 0.4519230769230769, 0.4423076923076923, 0.47115384615384615, 0.5288461538461539, 0.4519230769230769, 0.9326923076923077, 0.9326923076923077, 0.6442307692307693, 0.5, 0.46153846153846156, 0.33653846153846156, 0.19230769230769232, 0.8461538461538461, 0.1346153846153846, 0.038461538461538464, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.009615384615384616, 0.9423076923076923, 0.0, 0.9326923076923077, 0.8846153846153846, 0.0, 0.0, 0.0, 0.009615384615384616, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.009615384615384616, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.009615384615384616, 0.019230769230769232, 0.019230769230769232, 0.038461538461538464, 0.10576923076923077, 0.18269230769230768, 0.2692307692307692, 0.4326923076923077, 0.7307692307692307], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/TsaE.gap.json b/pfam_gap_rates/TsaE.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..94291d3bb6f997082716dc7b2a6a10a9df68f2b9
--- /dev/null
+++ b/pfam_gap_rates/TsaE.gap.json
@@ -0,0 +1 @@
+{"family": "TsaE", "n_seqs": 2217, "length": 140, "gap_rates": [0.4790257104194858, 0.2372575552548489, 0.16599007668019847, 0.11727559765448804, 0.09382047812359044, 0.08119079837618404, 0.06901217861975643, 0.05863779882724402, 0.05367613892647722, 0.04781235904375282, 0.04330175913396482, 0.040144339197113216, 0.037889039242219216, 0.03698691926026162, 0.035182679296346414, 0.04194857916102842, 0.03473161930536761, 0.08209291835814163, 0.8985115020297699, 0.9395579612088408, 0.9161028416779432, 0.8633288227334236, 0.05187189896256202, 0.02435723951285521, 0.05593143888137122, 0.019395579612088407, 0.017140279657194408, 0.016238159675236806, 0.015336039693279206, 0.014884979702300407, 0.014433919711321606, 0.013982859720342805, 0.013531799729364006, 0.013531799729364006, 0.013080739738385205, 0.012629679747406405, 0.012629679747406405, 0.012629679747406405, 0.012178619756427604, 0.012178619756427604, 0.011727559765448805, 0.011727559765448805, 0.011727559765448805, 0.011727559765448805, 0.011727559765448805, 0.011727559765448805, 0.011276499774470004, 0.011276499774470004, 0.012629679747406405, 0.014884979702300407, 0.011727559765448805, 0.8506991429860171, 0.9097880018042399, 0.040144339197113216, 0.011727559765448805, 0.011727559765448805, 0.010825439783491205, 0.010374379792512404, 0.010374379792512404, 0.010374379792512404, 0.010374379792512404, 0.010825439783491205, 0.010825439783491205, 0.010374379792512404, 0.009923319801533603, 0.009923319801533603, 0.009021199819576003, 0.012629679747406405, 0.03067207938655841, 0.2255299954894001, 0.06540369869192603, 0.044654939106901215, 0.011727559765448805, 0.7207938655841227, 0.8809201623815968, 0.9490302210193956, 0.9264772214704555, 0.8322056833558863, 0.6508795669824087, 0.006765899864682003, 0.006765899864682003, 0.006765899864682003, 0.005412719891745603, 0.005412719891745603, 0.005412719891745603, 0.005412719891745603, 0.005412719891745603, 0.007216959855660803, 0.06450157870996842, 0.07216959855660803, 0.059088858818222824, 0.037889039242219216, 0.030221019395579612, 0.04781235904375282, 0.03112313937753721, 0.014433919711321606, 0.013531799729364006, 0.009923319801533603, 0.006765899864682003, 0.006765899864682003, 0.007668019846639603, 0.008570139828597204, 0.012629679747406405, 0.15651781686964367, 0.8421290031574199, 0.07487595850248083, 0.07803337843933243, 0.007668019846639603, 0.007668019846639603, 0.007668019846639603, 0.007668019846639603, 0.007668019846639603, 0.008119079837618403, 0.008119079837618403, 0.008119079837618403, 0.008119079837618403, 0.008119079837618403, 0.014884979702300407, 0.028416779431664412, 0.02210193955796121, 0.028416779431664412, 0.031574199368516014, 0.035182679296346414, 0.03924221921515562, 0.040144339197113216, 0.043752819124943616, 0.04330175913396482, 0.04871447902571042, 0.05232295895354082, 0.05863779882724402, 0.06765899864682003, 0.11772665764546685, 0.1930536761389265, 0.35543527289129456, 0.4848894903022102, 0.9079837618403248, 0.7600360847992783, 0.7807848443843031, 0.7974740640505187, 0.9318899413622012], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Tub.gap.json b/pfam_gap_rates/Tub.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..343f151f645e22d817753a1c707c2fc2cd2b2e24
--- /dev/null
+++ b/pfam_gap_rates/Tub.gap.json
@@ -0,0 +1 @@
+{"family": "Tub", "n_seqs": 772, "length": 369, "gap_rates": [0.5051813471502591, 0.47538860103626945, 0.4326424870466321, 0.41321243523316065, 0.40025906735751293, 0.3639896373056995, 0.35751295336787564, 0.3290155440414508, 0.3238341968911917, 0.31865284974093266, 0.3121761658031088, 0.3082901554404145, 0.3121761658031088, 0.30440414507772023, 0.3018134715025907, 0.3005181347150259, 0.2966321243523316, 0.6735751295336787, 0.6904145077720207, 0.7966321243523317, 0.7176165803108808, 0.6826424870466321, 0.6696891191709845, 0.2927461139896373, 0.29015544041450775, 0.29015544041450775, 0.29015544041450775, 0.2862694300518135, 0.2849740932642487, 0.2862694300518135, 0.2849740932642487, 0.5906735751295337, 0.6476683937823834, 0.8134715025906736, 0.6437823834196891, 0.44689119170984454, 0.40803108808290156, 0.3743523316062176, 0.2862694300518135, 0.2772020725388601, 0.27202072538860106, 0.27202072538860106, 0.27202072538860106, 0.26813471502590674, 0.266839378238342, 0.2694300518134715, 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\ No newline at end of file
diff --git a/pfam_gap_rates/Tuberin.gap.json b/pfam_gap_rates/Tuberin.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..1dc5db02eccc034a14f32b4588da9e9c7c3a17a1
--- /dev/null
+++ b/pfam_gap_rates/Tuberin.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Tudor-knot.gap.json b/pfam_gap_rates/Tudor-knot.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c8173fe7ac64c2deefb93e0caf5efca3f4f1d63c
--- /dev/null
+++ b/pfam_gap_rates/Tudor-knot.gap.json
@@ -0,0 +1 @@
+{"family": "Tudor-knot", "n_seqs": 974, "length": 86, "gap_rates": [0.8829568788501027, 0.5841889117043121, 0.3839835728952772, 0.2997946611909651, 0.22073921971252566, 0.19096509240246407, 0.17761806981519507, 0.1540041067761807, 0.14681724845995894, 0.14784394250513347, 0.1437371663244353, 0.8408624229979466, 0.9106776180698152, 0.8480492813141683, 0.7371663244353183, 0.5338809034907598, 0.11498973305954825, 0.10574948665297741, 0.10061601642710473, 0.09240246406570841, 0.08829568788501027, 0.07802874743326489, 0.06262833675564682, 0.060574948665297744, 0.058521560574948665, 0.058521560574948665, 0.055441478439425054, 0.049281314168377825, 0.04620123203285421, 0.04004106776180698, 0.7874743326488707, 0.9332648870636551, 0.8860369609856262, 0.6242299794661191, 0.033880903490759756, 0.08726899383983573, 0.12320328542094455, 0.060574948665297744, 0.7340862422997947, 0.7792607802874744, 0.8336755646817249, 0.8737166324435318, 0.893223819301848, 0.9024640657084189, 0.9127310061601642, 0.9188911704312115, 0.9229979466119097, 0.9291581108829569, 0.9414784394250514, 0.9476386036960985, 0.9363449691991786, 0.9250513347022588, 0.9229979466119097, 0.9137577002053389, 0.9075975359342916, 0.8973305954825462, 0.8819301848049281, 0.8459958932238193, 0.8069815195071869, 0.7546201232032854, 0.7217659137577002, 0.03182751540041068, 0.017453798767967144, 0.006160164271047228, 0.002053388090349076, 0.001026694045174538, 0.001026694045174538, 0.001026694045174538, 0.001026694045174538, 0.0, 0.003080082135523614, 0.006160164271047228, 0.007186858316221766, 0.009240246406570842, 0.019507186858316223, 0.019507186858316223, 0.019507186858316223, 0.02566735112936345, 0.03696098562628337, 0.049281314168377825, 0.055441478439425054, 0.0728952772073922, 0.10472279260780287, 0.15092402464065707, 0.4404517453798768, 0.8552361396303901], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/U1snRNP70_N.gap.json b/pfam_gap_rates/U1snRNP70_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..6649897069a353d90ddfb2a763cac745370dffed
--- /dev/null
+++ b/pfam_gap_rates/U1snRNP70_N.gap.json
@@ -0,0 +1 @@
+{"family": "U1snRNP70_N", "n_seqs": 299, "length": 107, "gap_rates": [0.46153846153846156, 0.09698996655518395, 0.04013377926421405, 0.03678929765886288, 0.030100334448160536, 0.026755852842809364, 0.026755852842809364, 0.026755852842809364, 0.020066889632107024, 0.020066889632107024, 0.020066889632107024, 0.020066889632107024, 0.020066889632107024, 0.020066889632107024, 0.020066889632107024, 0.026755852842809364, 0.020066889632107024, 0.020066889632107024, 0.023411371237458192, 0.023411371237458192, 0.023411371237458192, 0.020066889632107024, 0.030100334448160536, 0.21739130434782608, 0.2140468227424749, 0.2040133779264214, 0.20735785953177258, 0.05351170568561873, 0.07357859531772576, 0.06354515050167224, 0.07023411371237458, 0.09364548494983277, 0.9431438127090301, 0.7926421404682275, 0.046822742474916385, 0.023411371237458192, 0.013377926421404682, 0.013377926421404682, 0.013377926421404682, 0.010033444816053512, 0.010033444816053512, 0.010033444816053512, 0.010033444816053512, 0.010033444816053512, 0.010033444816053512, 0.013377926421404682, 0.013377926421404682, 0.13043478260869565, 0.4414715719063545, 0.7123745819397993, 0.8394648829431438, 0.8494983277591973, 0.8729096989966555, 0.8862876254180602, 0.919732441471572, 0.9264214046822743, 0.8996655518394648, 0.8795986622073578, 0.8595317725752508, 0.842809364548495, 0.8327759197324415, 0.68561872909699, 0.07692307692307693, 0.10702341137123746, 0.04013377926421405, 0.026755852842809364, 0.026755852842809364, 0.016722408026755852, 0.020066889632107024, 0.030100334448160536, 0.016722408026755852, 0.18394648829431437, 0.016722408026755852, 0.016722408026755852, 0.016722408026755852, 0.020066889632107024, 0.020066889632107024, 0.020066889632107024, 0.026755852842809364, 0.023411371237458192, 0.023411371237458192, 0.023411371237458192, 0.026755852842809364, 0.033444816053511704, 0.03678929765886288, 0.04013377926421405, 0.04013377926421405, 0.043478260869565216, 0.043478260869565216, 0.043478260869565216, 0.043478260869565216, 0.043478260869565216, 0.046822742474916385, 0.043478260869565216, 0.043478260869565216, 0.05016722408026756, 0.05016722408026756, 0.05016722408026756, 0.06354515050167224, 0.06020066889632107, 0.06020066889632107, 0.06354515050167224, 0.06688963210702341, 0.08695652173913043, 0.0903010033444816, 0.15384615384615385, 0.23745819397993312], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/UAE_UbL.gap.json b/pfam_gap_rates/UAE_UbL.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..51f01227af29d1fe1fb57d7ef86b416e12bd80e0
--- /dev/null
+++ b/pfam_gap_rates/UAE_UbL.gap.json
@@ -0,0 +1 @@
+{"family": "UAE_UbL", "n_seqs": 246, "length": 98, "gap_rates": [0.32926829268292684, 0.16666666666666666, 0.12601626016260162, 0.07723577235772358, 0.056910569105691054, 0.04878048780487805, 0.028455284552845527, 0.024390243902439025, 0.024390243902439025, 0.024390243902439025, 0.024390243902439025, 0.024390243902439025, 0.02032520325203252, 0.028455284552845527, 0.016260162601626018, 0.056910569105691054, 0.008130081300813009, 0.0040650406504065045, 0.012195121951219513, 0.008130081300813009, 0.0040650406504065045, 0.008130081300813009, 0.008130081300813009, 0.008130081300813009, 0.008130081300813009, 0.0, 0.15447154471544716, 0.0040650406504065045, 0.0, 0.0, 0.0040650406504065045, 0.8577235772357723, 0.35772357723577236, 0.3333333333333333, 0.012195121951219513, 0.0, 0.0, 0.0, 0.0, 0.34959349593495936, 0.7439024390243902, 0.8008130081300813, 0.8211382113821138, 0.7601626016260162, 0.7195121951219512, 0.3617886178861789, 0.34959349593495936, 0.34552845528455284, 0.3333333333333333, 0.3130081300813008, 0.0, 0.012195121951219513, 0.02032520325203252, 0.0, 0.0040650406504065045, 0.3252032520325203, 0.016260162601626018, 0.008130081300813009, 0.008130081300813009, 0.0040650406504065045, 0.0040650406504065045, 0.0040650406504065045, 0.0040650406504065045, 0.0040650406504065045, 0.0040650406504065045, 0.0040650406504065045, 0.7926829268292683, 0.9227642276422764, 0.7804878048780488, 0.0040650406504065045, 0.0040650406504065045, 0.0040650406504065045, 0.0040650406504065045, 0.008130081300813009, 0.008130081300813009, 0.008130081300813009, 0.008130081300813009, 0.008130081300813009, 0.008130081300813009, 0.008130081300813009, 0.008130081300813009, 0.012195121951219513, 0.016260162601626018, 0.016260162601626018, 0.7032520325203252, 0.044715447154471545, 0.04065040650406504, 0.04878048780487805, 0.052845528455284556, 0.052845528455284556, 0.06504065040650407, 0.07317073170731707, 0.08943089430894309, 0.14634146341463414, 0.1910569105691057, 0.2601626016260163, 0.37398373983739835, 0.6382113821138211], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/UBA.gap.json b/pfam_gap_rates/UBA.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..0ca9b4aaf2f6e23d333b50e7c1ea6ecf7833464a
--- /dev/null
+++ b/pfam_gap_rates/UBA.gap.json
@@ -0,0 +1 @@
+{"family": "UBA", "n_seqs": 3468, "length": 40, "gap_rates": [0.8777393310265282, 0.4815455594002307, 0.290080738177624, 0.19319492502883506, 0.11101499423298732, 0.047001153402537486, 0.03229527104959631, 0.02104959630911188, 0.010668973471741637, 0.006920415224913495, 0.0057670126874279125, 0.0028835063437139563, 0.0028835063437139563, 0.9284890426758939, 0.0025951557093425604, 0.002018454440599769, 0.002018454440599769, 0.0011534025374855825, 0.9036908881199539, 0.0011534025374855825, 0.0002883506343713956, 0.0002883506343713956, 0.0, 0.0002883506343713956, 0.0002883506343713956, 0.004325259515570935, 0.0011534025374855825, 0.0014417531718569781, 0.0011534025374855825, 0.022779700115340255, 0.8324682814302191, 0.0028835063437139563, 0.004036908881199538, 0.006055363321799308, 0.00865051903114187, 0.00980392156862745, 0.017589388696655134, 0.04382929642445214, 0.08564013840830449, 0.14100346020761245], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/UBX.gap.json b/pfam_gap_rates/UBX.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..027fe1e1047864256635b5e9b57010868c5ec3d9
--- /dev/null
+++ b/pfam_gap_rates/UBX.gap.json
@@ -0,0 +1 @@
+{"family": "UBX", "n_seqs": 1908, "length": 100, "gap_rates": [0.8443396226415094, 0.6137316561844863, 0.4129979035639413, 0.22536687631027252, 0.12840670859538783, 0.059748427672955975, 0.03825995807127883, 0.029874213836477988, 0.025681341719077568, 0.020440251572327043, 0.018867924528301886, 0.01729559748427673, 0.018867924528301886, 0.020440251572327043, 0.01729559748427673, 0.03773584905660377, 0.02830188679245283, 0.0110062893081761, 0.011530398322851153, 0.0047169811320754715, 0.0041928721174004195, 0.003668763102725367, 0.003668763102725367, 0.0041928721174004195, 0.0031446540880503146, 0.0015723270440251573, 0.0005241090146750524, 0.0010482180293501049, 0.0015723270440251573, 0.0015723270440251573, 0.0015723270440251573, 0.002620545073375262, 0.0031446540880503146, 0.002620545073375262, 0.014675052410901468, 0.010482180293501049, 0.01310272536687631, 0.020964360587002098, 0.016247379454926623, 0.016771488469601678, 0.016771488469601678, 0.018867924528301886, 0.022536687631027254, 0.9046121593291404, 0.029350104821802937, 0.18553459119496854, 0.7746331236897275, 0.8558700209643606, 0.8784067085953878, 0.8883647798742138, 0.8967505241090147, 0.9056603773584906, 0.9135220125786163, 0.9276729559748428, 0.9339622641509434, 0.9203354297693921, 0.9114255765199162, 0.9030398322851153, 0.8930817610062893, 0.8846960167714885, 0.8632075471698113, 0.8312368972746331, 0.6750524109014675, 0.036163522012578615, 0.01939203354297694, 0.016771488469601678, 0.06079664570230608, 0.03878406708595388, 0.022536687631027254, 0.9313417190775681, 0.03668763102725367, 0.036163522012578615, 0.03930817610062893, 0.03773584905660377, 0.04821802935010482, 0.04874213836477988, 0.05922431865828092, 0.0749475890985325, 0.08123689727463312, 0.10953878406708595, 0.5796645702306079, 0.4638364779874214, 0.12368972746331237, 0.1111111111111111, 0.11477987421383648, 0.120020964360587, 0.12264150943396226, 0.12683438155136267, 0.9334381551362684, 0.3752620545073375, 0.1540880503144654, 0.15932914046121593, 0.16771488469601678, 0.18343815513626835, 0.2038784067085954, 0.2290356394129979, 0.24161425576519915, 0.29350104821802936, 0.34958071278826, 0.5178197064989518], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/UCR_TM.gap.json b/pfam_gap_rates/UCR_TM.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..5e915e3218715f3456fa287a6a5774d7454ef630
--- /dev/null
+++ b/pfam_gap_rates/UCR_TM.gap.json
@@ -0,0 +1 @@
+{"family": "UCR_TM", "n_seqs": 331, "length": 69, "gap_rates": [0.6525679758308157, 0.6374622356495468, 0.6344410876132931, 0.6132930513595166, 0.45317220543806647, 0.38972809667673713, 0.3293051359516616, 0.9486404833836858, 0.945619335347432, 0.2598187311178248, 0.24773413897280966, 0.2084592145015106, 0.2054380664652568, 0.1903323262839879, 0.17522658610271905, 0.1661631419939577, 0.21148036253776434, 0.23867069486404835, 0.40483383685800606, 0.38972809667673713, 0.3474320241691843, 0.3293051359516616, 0.3474320241691843, 0.3564954682779456, 0.5981873111782477, 0.5861027190332326, 0.5468277945619335, 0.47129909365558914, 0.40181268882175225, 0.338368580060423, 0.32326283987915405, 0.28700906344410876, 0.25075528700906347, 0.06042296072507553, 0.021148036253776436, 0.021148036253776436, 0.021148036253776436, 0.021148036253776436, 0.021148036253776436, 0.01812688821752266, 0.006042296072507553, 0.0030211480362537764, 0.0030211480362537764, 0.8972809667673716, 0.0030211480362537764, 0.0, 0.0030211480362537764, 0.0030211480362537764, 0.0030211480362537764, 0.0030211480362537764, 0.0030211480362537764, 0.0030211480362537764, 0.0030211480362537764, 0.0030211480362537764, 0.0030211480362537764, 0.0030211480362537764, 0.00906344410876133, 0.00906344410876133, 0.00906344410876133, 0.00906344410876133, 0.00906344410876133, 0.00906344410876133, 0.00906344410876133, 0.012084592145015106, 0.015105740181268883, 0.015105740181268883, 0.02416918429003021, 0.030211480362537766, 0.0634441087613293], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/UDG.gap.json b/pfam_gap_rates/UDG.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e071ff498714acab14968a7dd1d3a60f19174fdb
--- /dev/null
+++ b/pfam_gap_rates/UDG.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/UDPG_MGDP_dh_C.gap.json b/pfam_gap_rates/UDPG_MGDP_dh_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..72a77dfcfb006205259948d3637fce8ff3ae5fe5
--- /dev/null
+++ b/pfam_gap_rates/UDPG_MGDP_dh_C.gap.json
@@ -0,0 +1 @@
+{"family": "UDPG_MGDP_dh_C", "n_seqs": 3676, "length": 119, "gap_rates": [0.37241566920565833, 0.019042437431991296, 0.010609357997823721, 0.010609357997823721, 0.010337323177366704, 0.010609357997823721, 0.009793253536452665, 0.009793253536452665, 0.009249183895538629, 0.009521218715995648, 0.009249183895538629, 0.008161044613710556, 0.007889009793253536, 0.0073449401523395, 0.007072905331882481, 0.007072905331882481, 0.006528835690968444, 0.006528835690968444, 0.006528835690968444, 0.006256800870511426, 0.005712731229597388, 0.005168661588683352, 0.004624591947769314, 0.004624591947769314, 0.004624591947769314, 0.004624591947769314, 0.010065288356909684, 0.006528835690968444, 0.006528835690968444, 0.00544069640914037, 0.004896626768226333, 0.004896626768226333, 0.004896626768226333, 0.005168661588683352, 0.00544069640914037, 0.005168661588683352, 0.005168661588683352, 0.005168661588683352, 0.005168661588683352, 0.00544069640914037, 0.00544069640914037, 0.00544069640914037, 0.006528835690968444, 0.008433079434167573, 0.012785636561479869, 0.04352557127312296, 0.08106637649619151, 0.5198585418933623, 0.5310119695321001, 0.6561479869423286, 0.8321545157780196, 0.8430359085963003, 0.8615342763873776, 0.8675190424374319, 0.9088683351468988, 0.9496735582154516, 0.9279107725788901, 0.9007072905331882, 0.8653427638737758, 0.8566376496191512, 0.8373231773667029, 0.8008705114254625, 0.4281828073993471, 0.23612622415669204, 0.12105549510337323, 0.09793253536452666, 0.088139281828074, 0.07236126224156691, 0.04978237214363439, 0.09874863982589771, 0.12595212187159957, 0.11207834602829161, 0.02665941240478781, 0.018498367791077257, 0.015505984766050054, 0.015778019586507073, 0.014961915125136017, 0.011969532100108813, 0.010609357997823721, 0.011425462459194777, 0.011425462459194777, 0.011425462459194777, 0.01088139281828074, 0.011425462459194777, 0.013057671381936888, 0.014145810663764961, 0.017682263329706203, 0.01985854189336235, 0.020674646354733407, 0.024483133841131665, 0.02747551686615887, 0.031011969532100107, 0.03373231773667029, 0.14635473340587596, 0.23313384113166485, 0.24319912948857453, 0.24727965179542982, 0.24945593035908598, 0.250544069640914, 0.2603373231773667, 0.2042981501632209, 0.23258977149075083, 0.20538628944504897, 0.9167573449401524, 0.6523394994559304, 0.1395538628944505, 0.13601741022850924, 0.13465723612622416, 0.1338411316648531, 0.13438520130576714, 0.13465723612622416, 0.13547334058759522, 0.13792165397170839, 0.14281828073993472, 0.1531556039173014, 0.1708378672470076, 0.20021762785636563, 0.382480957562568, 0.7614254624591947], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/UEV.gap.json b/pfam_gap_rates/UEV.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..fb1e9a21fd4713b32dfea6f0b976f74196027c55
--- /dev/null
+++ b/pfam_gap_rates/UEV.gap.json
@@ -0,0 +1 @@
+{"family": "UEV", "n_seqs": 356, "length": 126, "gap_rates": [0.6910112359550562, 0.351123595505618, 0.26685393258426965, 0.22752808988764045, 0.21910112359550563, 0.21910112359550563, 0.21629213483146068, 0.21629213483146068, 0.21629213483146068, 0.21348314606741572, 0.21348314606741572, 0.21348314606741572, 0.21067415730337077, 0.20786516853932585, 0.20224719101123595, 0.20224719101123595, 0.199438202247191, 0.20224719101123595, 0.199438202247191, 0.2247191011235955, 0.23595505617977527, 0.22191011235955055, 0.21910112359550563, 0.19662921348314608, 0.16853932584269662, 0.1601123595505618, 0.16292134831460675, 0.1601123595505618, 0.14606741573033707, 0.1404494382022472, 0.13764044943820225, 0.1348314606741573, 0.13202247191011235, 0.13202247191011235, 0.12359550561797752, 0.12359550561797752, 0.12359550561797752, 0.12359550561797752, 0.12359550561797752, 0.13202247191011235, 0.13202247191011235, 0.12921348314606743, 0.12640449438202248, 0.12359550561797752, 0.17415730337078653, 0.1544943820224719, 0.12640449438202248, 0.07303370786516854, 0.05898876404494382, 0.056179775280898875, 0.056179775280898875, 0.056179775280898875, 0.05056179775280899, 0.05056179775280899, 0.05056179775280899, 0.05056179775280899, 0.0449438202247191, 0.0449438202247191, 0.0449438202247191, 0.0449438202247191, 0.0449438202247191, 0.042134831460674156, 0.042134831460674156, 0.042134831460674156, 0.042134831460674156, 0.03651685393258427, 0.03651685393258427, 0.03651685393258427, 0.03651685393258427, 0.03651685393258427, 0.03651685393258427, 0.03651685393258427, 0.03651685393258427, 0.042134831460674156, 0.025280898876404494, 0.9353932584269663, 0.8932584269662921, 0.019662921348314606, 0.016853932584269662, 0.016853932584269662, 0.019662921348314606, 0.014044943820224719, 0.014044943820224719, 0.6769662921348315, 0.014044943820224719, 0.014044943820224719, 0.014044943820224719, 0.016853932584269662, 0.016853932584269662, 0.016853932584269662, 0.019662921348314606, 0.019662921348314606, 0.019662921348314606, 0.02247191011235955, 0.02247191011235955, 0.025280898876404494, 0.019662921348314606, 0.02247191011235955, 0.019662921348314606, 0.019662921348314606, 0.025280898876404494, 0.028089887640449437, 0.7247191011235955, 0.6938202247191011, 0.12359550561797752, 0.05056179775280899, 0.05056179775280899, 0.047752808988764044, 0.05337078651685393, 0.05337078651685393, 0.056179775280898875, 0.056179775280898875, 0.05898876404494382, 0.06179775280898876, 0.0702247191011236, 0.06741573033707865, 0.0702247191011236, 0.0702247191011236, 0.07865168539325842, 0.08146067415730338, 0.09831460674157304, 0.12078651685393259, 0.13202247191011235, 0.1348314606741573, 0.14325842696629212, 0.21629213483146068], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/ULD.gap.json b/pfam_gap_rates/ULD.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..034b031f8a3eba0fe1b07dacfecf081db5e2ee3c
--- /dev/null
+++ b/pfam_gap_rates/ULD.gap.json
@@ -0,0 +1 @@
+{"family": "ULD", "n_seqs": 102, "length": 110, "gap_rates": [0.803921568627451, 0.20588235294117646, 0.19607843137254902, 0.19607843137254902, 0.19607843137254902, 0.19607843137254902, 0.19607843137254902, 0.19607843137254902, 0.19607843137254902, 0.19607843137254902, 0.19607843137254902, 0.19607843137254902, 0.19607843137254902, 0.19607843137254902, 0.20588235294117646, 0.20588235294117646, 0.20588235294117646, 0.5294117647058824, 0.5392156862745098, 0.5490196078431373, 0.24509803921568626, 0.22549019607843138, 0.19607843137254902, 0.20588235294117646, 0.45098039215686275, 0.8333333333333334, 0.9313725490196079, 0.8725490196078431, 0.7647058823529411, 0.7549019607843137, 0.7254901960784313, 0.5294117647058824, 0.5294117647058824, 0.17647058823529413, 0.17647058823529413, 0.17647058823529413, 0.17647058823529413, 0.16666666666666666, 0.1568627450980392, 0.1568627450980392, 0.1568627450980392, 0.1568627450980392, 0.1568627450980392, 0.1568627450980392, 0.1568627450980392, 0.14705882352941177, 0.14705882352941177, 0.14705882352941177, 0.13725490196078433, 0.13725490196078433, 0.13725490196078433, 0.13725490196078433, 0.13725490196078433, 0.13725490196078433, 0.13725490196078433, 0.13725490196078433, 0.13725490196078433, 0.13725490196078433, 0.13725490196078433, 0.13725490196078433, 0.13725490196078433, 0.29411764705882354, 0.14705882352941177, 0.13725490196078433, 0.13725490196078433, 0.12745098039215685, 0.11764705882352941, 0.10784313725490197, 0.08823529411764706, 0.058823529411764705, 0.06862745098039216, 0.10784313725490197, 0.10784313725490197, 0.12745098039215685, 0.13725490196078433, 0.13725490196078433, 0.13725490196078433, 0.13725490196078433, 0.13725490196078433, 0.13725490196078433, 0.13725490196078433, 0.13725490196078433, 0.13725490196078433, 0.13725490196078433, 0.13725490196078433, 0.13725490196078433, 0.13725490196078433, 0.13725490196078433, 0.13725490196078433, 0.13725490196078433, 0.13725490196078433, 0.13725490196078433, 0.13725490196078433, 0.13725490196078433, 0.13725490196078433, 0.13725490196078433, 0.13725490196078433, 0.13725490196078433, 0.13725490196078433, 0.13725490196078433, 0.13725490196078433, 0.13725490196078433, 0.13725490196078433, 0.13725490196078433, 0.13725490196078433, 0.13725490196078433, 0.14705882352941177, 0.14705882352941177, 0.17647058823529413, 0.3627450980392157], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/UMPH-1.gap.json b/pfam_gap_rates/UMPH-1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..6a428b481a88fad13711eb156749155c6b4bf232
--- /dev/null
+++ b/pfam_gap_rates/UMPH-1.gap.json
@@ -0,0 +1 @@
+{"family": "UMPH-1", "n_seqs": 265, "length": 262, "gap_rates": [0.5547169811320755, 0.33584905660377357, 0.33584905660377357, 0.33584905660377357, 0.3320754716981132, 0.3283018867924528, 0.3283018867924528, 0.30566037735849055, 0.7396226415094339, 0.3018867924528302, 0.3018867924528302, 0.2981132075471698, 0.28679245283018867, 0.27547169811320754, 0.24528301886792453, 0.24528301886792453, 0.24150943396226415, 0.24150943396226415, 0.23773584905660378, 0.24150943396226415, 0.24150943396226415, 0.24150943396226415, 0.24150943396226415, 0.24150943396226415, 0.8679245283018868, 0.36981132075471695, 0.3584905660377358, 0.3471698113207547, 0.23773584905660378, 0.23018867924528302, 0.23018867924528302, 0.23018867924528302, 0.23018867924528302, 0.22641509433962265, 0.21509433962264152, 0.21509433962264152, 0.21509433962264152, 0.2188679245283019, 0.21509433962264152, 0.21509433962264152, 0.20754716981132076, 0.20754716981132076, 0.20754716981132076, 0.20754716981132076, 0.20754716981132076, 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\ No newline at end of file
diff --git a/pfam_gap_rates/UNC-50.gap.json b/pfam_gap_rates/UNC-50.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..5805caff563f937751419d832ca0251da7764bb3
--- /dev/null
+++ b/pfam_gap_rates/UNC-50.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/UNC-93.gap.json b/pfam_gap_rates/UNC-93.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..126e63899fb1aa456b54401c42cf32ccb7e135e6
--- /dev/null
+++ b/pfam_gap_rates/UNC-93.gap.json
@@ -0,0 +1 @@
+{"family": "UNC-93", "n_seqs": 606, "length": 166, "gap_rates": [0.6996699669966997, 0.599009900990099, 0.570957095709571, 0.5610561056105611, 0.5561056105610561, 0.5445544554455446, 0.5412541254125413, 0.5379537953795379, 0.5363036303630363, 0.5363036303630363, 0.533003300330033, 0.533003300330033, 0.5313531353135313, 0.528052805280528, 0.5247524752475248, 0.5165016501650165, 0.5165016501650165, 0.5148514851485149, 0.5181518151815182, 0.5148514851485149, 0.5264026402640264, 0.5346534653465347, 0.6188118811881188, 0.6221122112211221, 0.6386138613861386, 0.6518151815181518, 0.5792079207920792, 0.5858085808580858, 0.599009900990099, 0.698019801980198, 0.7574257425742574, 0.6633663366336634, 0.6221122112211221, 0.5874587458745875, 0.4801980198019802, 0.38283828382838286, 0.33003300330033003, 0.31353135313531355, 0.2986798679867987, 0.29042904290429045, 0.26732673267326734, 0.19636963696369636, 0.16666666666666666, 0.13696369636963696, 0.10726072607260725, 0.10066006600660066, 0.09735973597359736, 0.0924092409240924, 0.09405940594059406, 0.0924092409240924, 0.08250825082508251, 0.07425742574257425, 0.0627062706270627, 0.0627062706270627, 0.0594059405940594, 0.0594059405940594, 0.056105610561056105, 0.054455445544554455, 0.054455445544554455, 0.05115511551155116, 0.9323432343234324, 0.04785478547854786, 0.0462046204620462, 0.0462046204620462, 0.0462046204620462, 0.0462046204620462, 0.0462046204620462, 0.04455445544554455, 0.04455445544554455, 0.0462046204620462, 0.041254125412541254, 0.041254125412541254, 0.041254125412541254, 0.039603960396039604, 0.041254125412541254, 0.041254125412541254, 0.039603960396039604, 0.039603960396039604, 0.039603960396039604, 0.039603960396039604, 0.039603960396039604, 0.041254125412541254, 0.0429042904290429, 0.0462046204620462, 0.0462046204620462, 0.05115511551155116, 0.0462046204620462, 0.04950495049504951, 0.9438943894389439, 0.9422442244224423, 0.052805280528052806, 0.9125412541254125, 0.9141914191419142, 0.9125412541254125, 0.9108910891089109, 0.05115511551155116, 0.04950495049504951, 0.9257425742574258, 0.9306930693069307, 0.9257425742574258, 0.9257425742574258, 0.05115511551155116, 0.052805280528052806, 0.052805280528052806, 0.052805280528052806, 0.052805280528052806, 0.052805280528052806, 0.056105610561056105, 0.056105610561056105, 0.056105610561056105, 0.052805280528052806, 0.052805280528052806, 0.052805280528052806, 0.052805280528052806, 0.05115511551155116, 0.0627062706270627, 0.066006600660066, 0.07260726072607261, 0.07425742574257425, 0.07425742574257425, 0.07920792079207921, 0.0924092409240924, 0.10396039603960396, 0.11551155115511551, 0.12046204620462046, 0.12706270627062707, 0.13366336633663367, 0.15676567656765678, 0.20132013201320131, 0.23102310231023102, 0.2590759075907591, 0.29372937293729373, 0.2953795379537954, 0.3069306930693069, 0.3118811881188119, 0.31353135313531355, 0.31683168316831684, 0.33663366336633666, 0.3432343234323432, 0.35313531353135313, 0.3547854785478548, 0.3580858085808581, 0.35973597359735976, 0.36303630363036304, 0.36468646864686466, 0.37623762376237624, 0.3910891089108911, 0.4075907590759076, 0.41089108910891087, 0.40924092409240925, 0.41089108910891087, 0.40924092409240925, 0.41254125412541254, 0.43234323432343236, 0.45874587458745875, 0.5066006600660066, 0.5148514851485149, 0.5379537953795379, 0.5577557755775577, 0.6006600660066007, 0.6435643564356436, 0.6864686468646864, 0.7277227722772277, 0.7854785478547854, 0.858085808580858, 0.9207920792079208], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/UPF0004.gap.json b/pfam_gap_rates/UPF0004.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..2d31607e91a9cb66a2273bb019a53bdbfb9a7953
--- /dev/null
+++ b/pfam_gap_rates/UPF0004.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/UPF0016.gap.json b/pfam_gap_rates/UPF0016.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..00e964b596ad994594318ee11b7cce1cd7296694
--- /dev/null
+++ b/pfam_gap_rates/UPF0016.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/UPF0051.gap.json b/pfam_gap_rates/UPF0051.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..2edd995bd9766f69d17b671d5f542f234ab21a5d
--- /dev/null
+++ b/pfam_gap_rates/UPF0051.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/UPF0060.gap.json b/pfam_gap_rates/UPF0060.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..2d59a06f312123dac103c2496b991608304d0936
--- /dev/null
+++ b/pfam_gap_rates/UPF0060.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/UPF0066.gap.json b/pfam_gap_rates/UPF0066.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..550ccb93f038654fe527c993008053e3b2f6200a
--- /dev/null
+++ b/pfam_gap_rates/UPF0066.gap.json
@@ -0,0 +1 @@
+{"family": "UPF0066", "n_seqs": 916, "length": 143, "gap_rates": [0.7358078602620087, 0.4170305676855895, 0.3318777292576419, 0.3165938864628821, 0.31004366812227074, 0.3089519650655022, 0.3078602620087336, 0.30131004366812225, 0.42358078602620086, 0.26965065502183405, 0.2368995633187773, 0.15065502183406113, 0.09716157205240175, 0.06550218340611354, 0.056768558951965066, 0.05240174672489083, 0.05131004366812227, 0.05131004366812227, 0.04912663755458515, 0.048034934497816595, 0.048034934497816595, 0.048034934497816595, 0.04694323144104803, 0.5949781659388647, 0.5120087336244541, 0.04912663755458515, 0.043668122270742356, 0.043668122270742356, 0.043668122270742356, 0.043668122270742356, 0.043668122270742356, 0.043668122270742356, 0.043668122270742356, 0.0425764192139738, 0.04148471615720524, 0.04148471615720524, 0.04148471615720524, 0.04039301310043668, 0.0425764192139738, 0.04148471615720524, 0.04039301310043668, 0.04039301310043668, 0.04039301310043668, 0.04039301310043668, 0.03711790393013101, 0.08733624454148471, 0.19868995633187772, 0.45305676855895194, 0.8176855895196506, 0.8908296943231441, 0.9039301310043668, 0.9137554585152838, 0.9235807860262009, 0.9170305676855895, 0.9072052401746725, 0.8973799126637555, 0.8679039301310044, 0.759825327510917, 0.4093886462882096, 0.14301310043668122, 0.08296943231441048, 0.0611353711790393, 0.14956331877729256, 0.14301310043668122, 0.11572052401746726, 0.11244541484716157, 0.03275109170305677, 0.8427947598253275, 0.8842794759825328, 0.9475982532751092, 0.9115720524017468, 0.868995633187773, 0.8155021834061136, 0.028384279475982533, 0.028384279475982533, 0.08733624454148471, 0.14410480349344978, 0.15829694323144106, 0.10152838427947598, 0.24344978165938866, 0.02947598253275109, 0.027292576419213975, 0.026200873362445413, 0.026200873362445413, 0.025109170305676855, 0.025109170305676855, 0.025109170305676855, 0.026200873362445413, 0.026200873362445413, 0.027292576419213975, 0.026200873362445413, 0.026200873362445413, 0.025109170305676855, 0.025109170305676855, 0.026200873362445413, 0.026200873362445413, 0.025109170305676855, 0.026200873362445413, 0.024017467248908297, 0.024017467248908297, 0.024017467248908297, 0.024017467248908297, 0.02292576419213974, 0.02292576419213974, 0.021834061135371178, 0.018558951965065504, 0.018558951965065504, 0.017467248908296942, 0.8024017467248908, 0.9213973799126638, 0.7052401746724891, 0.019650655021834062, 0.016375545851528384, 0.648471615720524, 0.8799126637554585, 0.9475982532751092, 0.7510917030567685, 0.019650655021834062, 0.014192139737991267, 0.013100436681222707, 0.013100436681222707, 0.014192139737991267, 0.014192139737991267, 0.012008733624454149, 0.012008733624454149, 0.012008733624454149, 0.012008733624454149, 0.013100436681222707, 0.013100436681222707, 0.013100436681222707, 0.014192139737991267, 0.014192139737991267, 0.014192139737991267, 0.014192139737991267, 0.014192139737991267, 0.016375545851528384, 0.019650655021834062, 0.03820960698689956, 0.08624454148471616, 0.12882096069868995, 0.20087336244541484, 0.2914847161572052, 0.34388646288209607], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/UPF0114.gap.json b/pfam_gap_rates/UPF0114.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ed542d99eb0e35e809f7e716e98fcbfe1b2f3f2a
--- /dev/null
+++ b/pfam_gap_rates/UPF0114.gap.json
@@ -0,0 +1 @@
+{"family": "UPF0114", "n_seqs": 443, "length": 157, "gap_rates": [0.22573363431151242, 0.17155756207674944, 0.14446952595936793, 0.11060948081264109, 0.1038374717832957, 0.09932279909706546, 0.09255079006772009, 0.08577878103837472, 0.0835214446952596, 0.07900677200902935, 0.07674943566591422, 0.07674943566591422, 0.07674943566591422, 0.0744920993227991, 0.0744920993227991, 0.0744920993227991, 0.0744920993227991, 0.06997742663656885, 0.0654627539503386, 0.06320541760722348, 0.060948081264108354, 0.05869074492099323, 0.05869074492099323, 0.056433408577878104, 0.05417607223476298, 0.04966139954853273, 0.04966139954853273, 0.04740406320541761, 0.04740406320541761, 0.04740406320541761, 0.04740406320541761, 0.04740406320541761, 0.04740406320541761, 0.04288939051918736, 0.040632054176072234, 0.040632054176072234, 0.040632054176072234, 0.040632054176072234, 0.19413092550790068, 0.6072234762979684, 0.7539503386004515, 0.8532731376975169, 0.90744920993228, 0.909706546275395, 0.9209932279909706, 0.909706546275395, 0.8939051918735892, 0.8126410835214447, 0.6568848758465011, 0.5936794582392777, 0.4966139954853273, 0.7110609480812641, 0.8465011286681715, 0.909706546275395, 0.9187358916478555, 0.9413092550790068, 0.9142212189616253, 0.9006772009029346, 0.7945823927765236, 0.6343115124153499, 0.24604966139954854, 0.045146726862302484, 0.03837471783295711, 0.02708803611738149, 0.5507900677200903, 0.02708803611738149, 0.022573363431151242, 0.020316027088036117, 0.01805869074492099, 0.01805869074492099, 0.01580135440180587, 0.01580135440180587, 0.01580135440180587, 0.01580135440180587, 0.01805869074492099, 0.020316027088036117, 0.01805869074492099, 0.01805869074492099, 0.01805869074492099, 0.013544018058690745, 0.013544018058690745, 0.013544018058690745, 0.013544018058690745, 0.011286681715575621, 0.011286681715575621, 0.011286681715575621, 0.011286681715575621, 0.011286681715575621, 0.011286681715575621, 0.011286681715575621, 0.011286681715575621, 0.011286681715575621, 0.011286681715575621, 0.011286681715575621, 0.011286681715575621, 0.013544018058690745, 0.013544018058690745, 0.013544018058690745, 0.01580135440180587, 0.03160270880361174, 0.0835214446952596, 0.09255079006772009, 0.13318284424379231, 0.12866817155756208, 0.11512415349887133, 0.7832957110609481, 0.8194130925507901, 0.8284424379232506, 0.8306997742663657, 0.8329571106094809, 0.835214446952596, 0.8668171557562077, 0.8893905191873589, 0.90744920993228, 0.9051918735891648, 0.8758465011286681, 0.835214446952596, 0.835214446952596, 0.8306997742663657, 0.8306997742663657, 0.8239277652370203, 0.8058690744920993, 0.7223476297968398, 0.04288939051918736, 0.033860045146726865, 0.03160270880361174, 0.02708803611738149, 0.02708803611738149, 0.02708803611738149, 0.029345372460496615, 0.03160270880361174, 0.03160270880361174, 0.03160270880361174, 0.03160270880361174, 0.03160270880361174, 0.03160270880361174, 0.03160270880361174, 0.03160270880361174, 0.03160270880361174, 0.03160270880361174, 0.03160270880361174, 0.03160270880361174, 0.033860045146726865, 0.033860045146726865, 0.033860045146726865, 0.033860045146726865, 0.03611738148984198, 0.03611738148984198, 0.03611738148984198, 0.03611738148984198, 0.03611738148984198, 0.03611738148984198, 0.03611738148984198, 0.03611738148984198, 0.04740406320541761, 0.10609480812641084, 0.4221218961625282], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/UPF0154.gap.json b/pfam_gap_rates/UPF0154.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..9070f88d812a0efdae061ca5aac724c404c2778e
--- /dev/null
+++ b/pfam_gap_rates/UPF0154.gap.json
@@ -0,0 +1 @@
+{"family": "UPF0154", "n_seqs": 281, "length": 60, "gap_rates": [0.6405693950177936, 0.09608540925266904, 0.02491103202846975, 0.014234875444839857, 0.0071174377224199285, 0.0035587188612099642, 0.0035587188612099642, 0.0035587188612099642, 0.0035587188612099642, 0.0035587188612099642, 0.0035587188612099642, 0.0035587188612099642, 0.0035587188612099642, 0.0035587188612099642, 0.0035587188612099642, 0.0035587188612099642, 0.0035587188612099642, 0.0035587188612099642, 0.0035587188612099642, 0.0035587188612099642, 0.0035587188612099642, 0.0035587188612099642, 0.0035587188612099642, 0.0035587188612099642, 0.10320284697508897, 0.0035587188612099642, 0.0035587188612099642, 0.0071174377224199285, 0.0035587188612099642, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0035587188612099642, 0.0071174377224199285, 0.0071174377224199285, 0.0071174377224199285, 0.0071174377224199285, 0.0071174377224199285, 0.0071174377224199285, 0.010676156583629894, 0.010676156583629894, 0.010676156583629894, 0.010676156583629894, 0.010676156583629894, 0.017793594306049824, 0.03558718861209965, 0.25622775800711745], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/UPF0158.gap.json b/pfam_gap_rates/UPF0158.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..884060fa389ae5d626009c3d55cf5e6d6f53c7e2
--- /dev/null
+++ b/pfam_gap_rates/UPF0158.gap.json
@@ -0,0 +1 @@
+{"family": "UPF0158", "n_seqs": 131, "length": 163, "gap_rates": [0.916030534351145, 0.9007633587786259, 0.8931297709923665, 0.8473282442748091, 0.8244274809160306, 0.7709923664122137, 0.7251908396946565, 0.7251908396946565, 0.648854961832061, 0.5877862595419847, 0.5343511450381679, 0.4580152671755725, 0.44274809160305345, 0.4198473282442748, 0.40458015267175573, 0.4198473282442748, 0.40458015267175573, 0.4122137404580153, 0.40458015267175573, 0.366412213740458, 0.8396946564885496, 0.9312977099236641, 0.7862595419847328, 0.3435114503816794, 0.3435114503816794, 0.33587786259541985, 0.3282442748091603, 0.32061068702290074, 0.31297709923664124, 0.31297709923664124, 0.31297709923664124, 0.31297709923664124, 0.31297709923664124, 0.31297709923664124, 0.3282442748091603, 0.32061068702290074, 0.2900763358778626, 0.3053435114503817, 0.3053435114503817, 0.9465648854961832, 0.2900763358778626, 0.2900763358778626, 0.2748091603053435, 0.2595419847328244, 0.2366412213740458, 0.20610687022900764, 0.1984732824427481, 0.1984732824427481, 0.17557251908396945, 0.13740458015267176, 0.15267175572519084, 0.15267175572519084, 0.40458015267175573, 0.33587786259541985, 0.2748091603053435, 0.16030534351145037, 0.11450381679389313, 0.08396946564885496, 0.04580152671755725, 0.9389312977099237, 0.04580152671755725, 0.022900763358778626, 0.07633587786259542, 0.022900763358778626, 0.022900763358778626, 0.022900763358778626, 0.015267175572519083, 0.015267175572519083, 0.022900763358778626, 0.022900763358778626, 0.022900763358778626, 0.022900763358778626, 0.022900763358778626, 0.022900763358778626, 0.015267175572519083, 0.015267175572519083, 0.015267175572519083, 0.022900763358778626, 0.015267175572519083, 0.007633587786259542, 0.007633587786259542, 0.007633587786259542, 0.007633587786259542, 0.007633587786259542, 0.007633587786259542, 0.8320610687022901, 0.061068702290076333, 0.015267175572519083, 0.022900763358778626, 0.015267175572519083, 0.007633587786259542, 0.022900763358778626, 0.015267175572519083, 0.007633587786259542, 0.007633587786259542, 0.007633587786259542, 0.015267175572519083, 0.007633587786259542, 0.007633587786259542, 0.007633587786259542, 0.007633587786259542, 0.015267175572519083, 0.9236641221374046, 0.022900763358778626, 0.022900763358778626, 0.030534351145038167, 0.022900763358778626, 0.015267175572519083, 0.022900763358778626, 0.022900763358778626, 0.022900763358778626, 0.022900763358778626, 0.03816793893129771, 0.030534351145038167, 0.0916030534351145, 0.10687022900763359, 0.11450381679389313, 0.10687022900763359, 0.06870229007633588, 0.08396946564885496, 0.11450381679389313, 0.06870229007633588, 0.05343511450381679, 0.04580152671755725, 0.04580152671755725, 0.04580152671755725, 0.04580152671755725, 0.04580152671755725, 0.04580152671755725, 0.05343511450381679, 0.04580152671755725, 0.04580152671755725, 0.05343511450381679, 0.05343511450381679, 0.061068702290076333, 0.06870229007633588, 0.07633587786259542, 0.0916030534351145, 0.10687022900763359, 0.1297709923664122, 0.15267175572519084, 0.17557251908396945, 0.22900763358778625, 0.26717557251908397, 0.2900763358778626, 0.3969465648854962, 0.4961832061068702, 0.6030534351145038, 0.7557251908396947, 0.7862595419847328, 0.8396946564885496, 0.8778625954198473, 0.8931297709923665, 0.8931297709923665, 0.8931297709923665, 0.9007633587786259, 0.9083969465648855, 0.916030534351145, 0.9236641221374046, 0.9236641221374046, 0.9312977099236641, 0.9312977099236641, 0.9312977099236641], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/UPF0175.gap.json b/pfam_gap_rates/UPF0175.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ebb99e1b433521e9a381c1c943d3aaaf0c10ae7f
--- /dev/null
+++ b/pfam_gap_rates/UPF0175.gap.json
@@ -0,0 +1 @@
+{"family": "UPF0175", "n_seqs": 475, "length": 76, "gap_rates": [0.5684210526315789, 0.45473684210526316, 0.4357894736842105, 0.4189473684210526, 0.40210526315789474, 0.3936842105263158, 0.38105263157894737, 0.3684210526315789, 0.35578947368421054, 0.3642105263157895, 0.35368421052631577, 0.3473684210526316, 0.32842105263157895, 0.2905263157894737, 0.27157894736842103, 0.24842105263157896, 0.1831578947368421, 0.1431578947368421, 0.10736842105263159, 0.23578947368421052, 0.20842105263157895, 0.19789473684210526, 0.18736842105263157, 0.029473684210526315, 0.02526315789473684, 0.018947368421052633, 0.014736842105263158, 0.014736842105263158, 0.014736842105263158, 0.014736842105263158, 0.010526315789473684, 0.00631578947368421, 0.00631578947368421, 0.00631578947368421, 0.00631578947368421, 0.00631578947368421, 0.00631578947368421, 0.004210526315789474, 0.004210526315789474, 0.002105263157894737, 0.002105263157894737, 0.002105263157894737, 0.002105263157894737, 0.0, 0.0, 0.9368421052631579, 0.0, 0.002105263157894737, 0.002105263157894737, 0.004210526315789474, 0.00631578947368421, 0.00631578947368421, 0.008421052631578947, 0.010526315789473684, 0.010526315789473684, 0.010526315789473684, 0.01263157894736842, 0.014736842105263158, 0.018947368421052633, 0.023157894736842106, 0.023157894736842106, 0.3831578947368421, 0.10105263157894737, 0.08, 0.07578947368421053, 0.07368421052631578, 0.07789473684210527, 0.0863157894736842, 0.09263157894736843, 0.11368421052631579, 0.12, 0.13052631578947368, 0.15789473684210525, 0.20210526315789473, 0.28842105263157897, 0.6968421052631579], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/UPF0220.gap.json b/pfam_gap_rates/UPF0220.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..3a69dad75bcaf7455a70833c7aa413a0c3fb0e89
--- /dev/null
+++ b/pfam_gap_rates/UPF0220.gap.json
@@ -0,0 +1 @@
+{"family": "UPF0220", "n_seqs": 334, "length": 184, "gap_rates": [0.7874251497005988, 0.6976047904191617, 0.6586826347305389, 0.718562874251497, 0.6047904191616766, 0.5778443113772455, 0.5688622754491018, 0.6017964071856288, 0.5658682634730539, 0.47005988023952094, 0.7604790419161677, 0.7065868263473054, 0.49700598802395207, 0.3772455089820359, 0.3712574850299401, 0.33532934131736525, 0.3083832335329341, 0.281437125748503, 0.25748502994011974, 0.24251497005988024, 0.2275449101796407, 0.2155688622754491, 0.20359281437125748, 0.17964071856287425, 0.16766467065868262, 0.08982035928143713, 0.08083832335329341, 0.08383233532934131, 0.08383233532934131, 0.08383233532934131, 0.08083832335329341, 0.0688622754491018, 0.0688622754491018, 0.06287425149700598, 0.06287425149700598, 0.06287425149700598, 0.06287425149700598, 0.06287425149700598, 0.059880239520958084, 0.059880239520958084, 0.059880239520958084, 0.06287425149700598, 0.06287425149700598, 0.059880239520958084, 0.059880239520958084, 0.0658682634730539, 0.0658682634730539, 0.0748502994011976, 0.11377245508982035, 0.8053892215568862, 0.5598802395209581, 0.5239520958083832, 0.5029940119760479, 0.47005988023952094, 0.8383233532934131, 0.8622754491017964, 0.8802395209580839, 0.8952095808383234, 0.8862275449101796, 0.8712574850299402, 0.8592814371257484, 0.8383233532934131, 0.30538922155688625, 0.18562874251497005, 0.059880239520958084, 0.05389221556886228, 0.05389221556886228, 0.05089820359281437, 0.05089820359281437, 0.05089820359281437, 0.04790419161676647, 0.04790419161676647, 0.04790419161676647, 0.04790419161676647, 0.04790419161676647, 0.04790419161676647, 0.04790419161676647, 0.04790419161676647, 0.04790419161676647, 0.04491017964071856, 0.041916167664670656, 0.038922155688622756, 0.038922155688622756, 0.03592814371257485, 0.03592814371257485, 0.03293413173652695, 0.03293413173652695, 0.03293413173652695, 0.03293413173652695, 0.03592814371257485, 0.03592814371257485, 0.038922155688622756, 0.04491017964071856, 0.9461077844311377, 0.04491017964071856, 0.04790419161676647, 0.7125748502994012, 0.7425149700598802, 0.7664670658682635, 0.7275449101796407, 0.6467065868263473, 0.05089820359281437, 0.08383233532934131, 0.19461077844311378, 0.18263473053892215, 0.2125748502994012, 0.937125748502994, 0.9491017964071856, 0.9221556886227545, 0.5389221556886228, 0.4311377245508982, 0.38622754491017963, 0.3383233532934132, 0.2844311377245509, 0.24850299401197604, 0.05389221556886228, 0.05089820359281437, 0.04790419161676647, 0.04491017964071856, 0.04491017964071856, 0.04491017964071856, 0.041916167664670656, 0.041916167664670656, 0.041916167664670656, 0.041916167664670656, 0.041916167664670656, 0.038922155688622756, 0.038922155688622756, 0.03592814371257485, 0.03592814371257485, 0.03592814371257485, 0.038922155688622756, 0.038922155688622756, 0.038922155688622756, 0.038922155688622756, 0.038922155688622756, 0.041916167664670656, 0.041916167664670656, 0.041916167664670656, 0.04491017964071856, 0.04790419161676647, 0.05089820359281437, 0.05389221556886228, 0.05688622754491018, 0.8952095808383234, 0.05688622754491018, 0.059880239520958084, 0.059880239520958084, 0.4880239520958084, 0.3592814371257485, 0.5299401197604791, 0.38922155688622756, 0.27245508982035926, 0.0658682634730539, 0.0688622754491018, 0.0688622754491018, 0.0688622754491018, 0.0718562874251497, 0.0718562874251497, 0.0718562874251497, 0.0718562874251497, 0.0718562874251497, 0.0718562874251497, 0.0718562874251497, 0.0718562874251497, 0.0718562874251497, 0.0718562874251497, 0.0718562874251497, 0.0718562874251497, 0.08982035928143713, 0.09281437125748503, 0.09880239520958084, 0.09880239520958084, 0.10179640718562874, 0.10479041916167664, 0.11077844311377245, 0.11077844311377245, 0.12574850299401197, 0.46407185628742514, 0.2245508982035928, 0.24850299401197604, 0.2964071856287425, 0.3712574850299401, 0.41916167664670656], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/UreD.gap.json b/pfam_gap_rates/UreD.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..9e06ec14a787dc19a169f6d8564022ef508ee9f5
--- /dev/null
+++ b/pfam_gap_rates/UreD.gap.json
@@ -0,0 +1 @@
+{"family": "UreD", "n_seqs": 690, "length": 284, "gap_rates": [0.5782608695652174, 0.1565217391304348, 0.07101449275362319, 0.057971014492753624, 0.0536231884057971, 0.042028985507246375, 0.04057971014492753, 0.04057971014492753, 0.04057971014492753, 0.034782608695652174, 0.036231884057971016, 0.034782608695652174, 0.034782608695652174, 0.034782608695652174, 0.03333333333333333, 0.03333333333333333, 0.028985507246376812, 0.028985507246376812, 0.02753623188405797, 0.02753623188405797, 0.02753623188405797, 0.02753623188405797, 0.02753623188405797, 0.03333333333333333, 0.028985507246376812, 0.028985507246376812, 0.02753623188405797, 0.030434782608695653, 0.028985507246376812, 0.028985507246376812, 0.02463768115942029, 0.02318840579710145, 0.02318840579710145, 0.02318840579710145, 0.02463768115942029, 0.02463768115942029, 0.02318840579710145, 0.021739130434782608, 0.02318840579710145, 0.02318840579710145, 0.02318840579710145, 0.9217391304347826, 0.8666666666666667, 0.034782608695652174, 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\ No newline at end of file
diff --git a/pfam_gap_rates/Uricase.gap.json b/pfam_gap_rates/Uricase.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..1e103ec0e30967c3c551f8a8d911dcf1deb2cded
--- /dev/null
+++ b/pfam_gap_rates/Uricase.gap.json
@@ -0,0 +1 @@
+{"family": "Uricase", "n_seqs": 724, "length": 179, "gap_rates": [0.8895027624309392, 0.21823204419889503, 0.08149171270718232, 0.04558011049723757, 0.03867403314917127, 0.03591160220994475, 0.03314917127071823, 0.029005524861878452, 0.029005524861878452, 0.029005524861878452, 0.029005524861878452, 0.029005524861878452, 0.7223756906077348, 0.8825966850828729, 0.7803867403314917, 0.5207182320441989, 0.029005524861878452, 0.09116022099447514, 0.09668508287292818, 0.07458563535911603, 0.04696132596685083, 0.029005524861878452, 0.026243093922651933, 0.024861878453038673, 0.023480662983425413, 0.022099447513812154, 0.020718232044198894, 0.020718232044198894, 0.020718232044198894, 0.019337016574585635, 0.017955801104972375, 0.017955801104972375, 0.017955801104972375, 0.017955801104972375, 0.017955801104972375, 0.017955801104972375, 0.47651933701657456, 0.031767955801104975, 0.4599447513812155, 0.023480662983425413, 0.017955801104972375, 0.017955801104972375, 0.017955801104972375, 0.5, 0.5, 0.5, 0.5, 0.5013812154696132, 0.5013812154696132, 0.5013812154696132, 0.5027624309392266, 0.505524861878453, 0.505524861878453, 0.505524861878453, 0.505524861878453, 0.505524861878453, 0.505524861878453, 0.6256906077348067, 0.6906077348066298, 0.7113259668508287, 0.7900552486187845, 0.8370165745856354, 0.9267955801104972, 0.93646408839779, 0.930939226519337, 0.925414364640884, 0.7955801104972375, 0.738950276243094, 0.6947513812154696, 0.6781767955801105, 0.5096685082872928, 0.505524861878453, 0.505524861878453, 0.505524861878453, 0.505524861878453, 0.505524861878453, 0.505524861878453, 0.5, 0.5, 0.5, 0.4972375690607735, 0.494475138121547, 0.494475138121547, 0.49171270718232046, 0.015193370165745856, 0.016574585635359115, 0.016574585635359115, 0.017955801104972375, 0.017955801104972375, 0.017955801104972375, 0.39779005524861877, 0.39502762430939226, 0.39226519337016574, 0.39088397790055246, 0.39088397790055246, 0.012430939226519336, 0.012430939226519336, 0.011049723756906077, 0.009668508287292817, 0.009668508287292817, 0.011049723756906077, 0.011049723756906077, 0.011049723756906077, 0.012430939226519336, 0.009668508287292817, 0.009668508287292817, 0.011049723756906077, 0.011049723756906077, 0.012430939226519336, 0.511049723756906, 0.511049723756906, 0.5124309392265194, 0.5138121546961326, 0.5138121546961326, 0.5138121546961326, 0.5138121546961326, 0.5441988950276243, 0.8825966850828729, 0.5138121546961326, 0.5138121546961326, 0.5138121546961326, 0.5138121546961326, 0.5124309392265194, 0.511049723756906, 0.511049723756906, 0.511049723756906, 0.015193370165745856, 0.015193370165745856, 0.016574585635359115, 0.015193370165745856, 0.015193370165745856, 0.013812154696132596, 0.013812154696132596, 0.015193370165745856, 0.017955801104972375, 0.019337016574585635, 0.019337016574585635, 0.019337016574585635, 0.019337016574585635, 0.019337016574585635, 0.019337016574585635, 0.019337016574585635, 0.019337016574585635, 0.020718232044198894, 0.020718232044198894, 0.020718232044198894, 0.020718232044198894, 0.020718232044198894, 0.020718232044198894, 0.020718232044198894, 0.027624309392265192, 0.5138121546961326, 0.34668508287292815, 0.4005524861878453, 0.7651933701657458, 0.8950276243093923, 0.7182320441988951, 0.4116022099447514, 0.35497237569060774, 0.09530386740331492, 0.08011049723756906, 0.06353591160220995, 0.052486187845303865, 0.04696132596685083, 0.04834254143646409, 0.04834254143646409, 0.08977900552486189, 0.05662983425414365, 0.06077348066298342, 0.0649171270718232, 0.0718232044198895, 0.07734806629834254, 0.0856353591160221, 0.09116022099447514, 0.09530386740331492, 0.10497237569060773, 0.15883977900552487, 0.2776243093922652, 0.56353591160221], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/UvrB.gap.json b/pfam_gap_rates/UvrB.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..0e207dbda2253f6c6e511eb03e2dc6605befd17c
--- /dev/null
+++ b/pfam_gap_rates/UvrB.gap.json
@@ -0,0 +1 @@
+{"family": "UvrB", "n_seqs": 2168, "length": 43, "gap_rates": [0.015682656826568265, 0.005535055350553505, 0.005535055350553505, 0.004612546125461255, 0.0036900369003690036, 0.0027675276752767526, 0.0009225092250922509, 0.0009225092250922509, 0.0009225092250922509, 0.0009225092250922509, 0.0009225092250922509, 0.0009225092250922509, 0.0009225092250922509, 0.0009225092250922509, 0.0009225092250922509, 0.0009225092250922509, 0.0009225092250922509, 0.0009225092250922509, 0.00046125461254612545, 0.00046125461254612545, 0.0, 0.0, 0.00046125461254612545, 0.00046125461254612545, 0.00046125461254612545, 0.00046125461254612545, 0.0009225092250922509, 0.0009225092250922509, 0.0009225092250922509, 0.0009225092250922509, 0.0013837638376383763, 0.0013837638376383763, 0.0018450184501845018, 0.0023062730627306273, 0.0027675276752767526, 0.0032287822878228783, 0.00507380073800738, 0.006918819188191882, 0.008763837638376383, 0.015682656826568265, 0.022601476014760147, 0.09547970479704797, 0.6531365313653137], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/V-ATPase_G.gap.json b/pfam_gap_rates/V-ATPase_G.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e24c13ccaca08373a52cadcb8ebcb04cf4123fb8
--- /dev/null
+++ b/pfam_gap_rates/V-ATPase_G.gap.json
@@ -0,0 +1 @@
+{"family": "V-ATPase_G", "n_seqs": 436, "length": 105, "gap_rates": [0.5711009174311926, 0.4105504587155963, 0.19954128440366972, 0.15137614678899083, 0.13073394495412843, 0.11926605504587157, 0.11697247706422019, 0.10550458715596331, 0.10550458715596331, 0.10091743119266056, 0.09174311926605505, 0.09403669724770643, 0.09174311926605505, 0.0871559633027523, 0.0871559633027523, 0.0871559633027523, 0.0871559633027523, 0.08486238532110092, 0.08256880733944955, 0.08027522935779817, 0.08027522935779817, 0.08027522935779817, 0.10550458715596331, 0.09862385321100918, 0.08944954128440367, 0.05733944954128441, 0.034403669724770644, 0.03211009174311927, 0.020642201834862386, 0.020642201834862386, 0.01834862385321101, 0.013761467889908258, 0.013761467889908258, 0.011467889908256881, 0.009174311926605505, 0.009174311926605505, 0.013761467889908258, 0.009174311926605505, 0.009174311926605505, 0.009174311926605505, 0.009174311926605505, 0.009174311926605505, 0.009174311926605505, 0.011467889908256881, 0.011467889908256881, 0.011467889908256881, 0.006880733944954129, 0.006880733944954129, 0.006880733944954129, 0.009174311926605505, 0.011467889908256881, 0.011467889908256881, 0.013761467889908258, 0.013761467889908258, 0.013761467889908258, 0.013761467889908258, 0.013761467889908258, 0.011467889908256881, 0.011467889908256881, 0.011467889908256881, 0.034403669724770644, 0.05733944954128441, 0.04357798165137615, 0.027522935779816515, 0.027522935779816515, 0.03211009174311927, 0.02522935779816514, 0.02981651376146789, 0.02981651376146789, 0.02981651376146789, 0.02522935779816514, 0.027522935779816515, 0.027522935779816515, 0.02981651376146789, 0.03211009174311927, 0.03669724770642202, 0.03669724770642202, 0.03669724770642202, 0.0389908256880734, 0.0389908256880734, 0.0389908256880734, 0.0389908256880734, 0.0389908256880734, 0.0389908256880734, 0.0389908256880734, 0.04128440366972477, 0.04357798165137615, 0.05045871559633028, 0.0481651376146789, 0.0481651376146789, 0.045871559633027525, 0.0481651376146789, 0.0481651376146789, 0.052752293577981654, 0.05504587155963303, 0.05504587155963303, 0.05504587155963303, 0.05733944954128441, 0.05963302752293578, 0.06422018348623854, 0.06880733944954129, 0.08486238532110092, 0.10550458715596331, 0.1720183486238532, 0.573394495412844], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/VapB_antitoxin.gap.json b/pfam_gap_rates/VapB_antitoxin.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..aaf37bbfe41154c20088936ac9c4b80161643668
--- /dev/null
+++ b/pfam_gap_rates/VapB_antitoxin.gap.json
@@ -0,0 +1 @@
+{"family": "VapB_antitoxin", "n_seqs": 335, "length": 48, "gap_rates": [0.27761194029850744, 0.14328358208955225, 0.08059701492537313, 0.07164179104477612, 0.041791044776119404, 0.03283582089552239, 0.03283582089552239, 0.023880597014925373, 0.020895522388059702, 0.020895522388059702, 0.014925373134328358, 0.008955223880597015, 0.005970149253731343, 0.005970149253731343, 0.005970149253731343, 0.0, 0.0, 0.0, 0.0, 0.0, 0.011940298507462687, 0.0029850746268656717, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0029850746268656717, 0.008955223880597015, 0.008955223880597015, 0.008955223880597015, 0.008955223880597015, 0.026865671641791045, 0.03582089552238806, 0.050746268656716415, 0.05373134328358209, 0.05373134328358209, 0.056716417910447764, 0.0626865671641791, 0.10149253731343283, 0.11940298507462686, 0.9432835820895522, 0.3373134328358209, 0.43283582089552236, 0.5194029850746269, 0.5970149253731343, 0.6865671641791045], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/VirB8.gap.json b/pfam_gap_rates/VirB8.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..76df789f59f02a28279c7bdee6665654f0f8fd36
--- /dev/null
+++ b/pfam_gap_rates/VirB8.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Vps54.gap.json b/pfam_gap_rates/Vps54.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..375301d7c79d24d8b2a5a59588259a177d87f68e
--- /dev/null
+++ b/pfam_gap_rates/Vps54.gap.json
@@ -0,0 +1 @@
+{"family": "Vps54", "n_seqs": 318, "length": 146, "gap_rates": [0.8710691823899371, 0.29874213836477986, 0.2138364779874214, 0.10377358490566038, 0.0880503144654088, 0.08176100628930817, 0.08176100628930817, 0.08176100628930817, 0.07547169811320754, 0.07547169811320754, 0.07547169811320754, 0.07232704402515723, 0.07232704402515723, 0.07232704402515723, 0.07232704402515723, 0.07232704402515723, 0.07232704402515723, 0.06918238993710692, 0.06918238993710692, 0.06918238993710692, 0.06918238993710692, 0.06918238993710692, 0.06918238993710692, 0.0660377358490566, 0.0660377358490566, 0.0660377358490566, 0.06289308176100629, 0.059748427672955975, 0.05660377358490566, 0.050314465408805034, 0.05345911949685535, 0.059748427672955975, 0.05660377358490566, 0.05660377358490566, 0.04716981132075472, 0.04716981132075472, 0.0440251572327044, 0.0440251572327044, 0.0440251572327044, 0.0440251572327044, 0.0440251572327044, 0.0440251572327044, 0.0440251572327044, 0.0440251572327044, 0.05345911949685535, 0.059748427672955975, 0.06289308176100629, 0.0660377358490566, 0.0660377358490566, 0.0660377358490566, 0.0660377358490566, 0.0660377358490566, 0.0660377358490566, 0.0660377358490566, 0.0660377358490566, 0.0660377358490566, 0.06289308176100629, 0.06918238993710692, 0.06918238993710692, 0.06918238993710692, 0.9433962264150944, 0.07232704402515723, 0.07861635220125786, 0.07547169811320754, 0.07547169811320754, 0.07232704402515723, 0.07861635220125786, 0.07547169811320754, 0.07232704402515723, 0.07547169811320754, 0.07547169811320754, 0.07232704402515723, 0.0660377358490566, 0.06918238993710692, 0.06289308176100629, 0.0660377358490566, 0.0660377358490566, 0.059748427672955975, 0.059748427672955975, 0.05660377358490566, 0.059748427672955975, 0.059748427672955975, 0.059748427672955975, 0.059748427672955975, 0.059748427672955975, 0.059748427672955975, 0.059748427672955975, 0.06289308176100629, 0.06289308176100629, 0.059748427672955975, 0.059748427672955975, 0.06289308176100629, 0.06289308176100629, 0.059748427672955975, 0.059748427672955975, 0.059748427672955975, 0.059748427672955975, 0.5471698113207547, 0.8584905660377359, 0.8930817610062893, 0.9119496855345912, 0.9245283018867925, 0.9465408805031447, 0.9308176100628931, 0.9245283018867925, 0.9025157232704403, 0.8805031446540881, 0.7641509433962265, 0.20125786163522014, 0.1918238993710692, 0.1289308176100629, 0.11006289308176101, 0.09119496855345911, 0.09119496855345911, 0.09119496855345911, 0.09119496855345911, 0.09433962264150944, 0.0880503144654088, 0.08176100628930817, 0.9465408805031447, 0.07861635220125786, 0.07861635220125786, 0.07547169811320754, 0.07547169811320754, 0.07547169811320754, 0.07861635220125786, 0.08176100628930817, 0.0880503144654088, 0.0880503144654088, 0.09119496855345911, 0.09119496855345911, 0.09119496855345911, 0.09119496855345911, 0.09433962264150944, 0.10062893081761007, 0.10062893081761007, 0.10062893081761007, 0.10062893081761007, 0.10377358490566038, 0.10377358490566038, 0.10377358490566038, 0.1069182389937107, 0.11006289308176101, 0.12578616352201258, 0.25157232704402516, 0.44654088050314467], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Vta1.gap.json b/pfam_gap_rates/Vta1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..63bf7c2872a271479c770152dbca0c8de6a8653a
--- /dev/null
+++ b/pfam_gap_rates/Vta1.gap.json
@@ -0,0 +1 @@
+{"family": "Vta1", "n_seqs": 487, "length": 166, "gap_rates": [0.7885010266940452, 0.25667351129363447, 0.17248459958932238, 0.10882956878850103, 0.09650924024640657, 0.0944558521560575, 0.0944558521560575, 0.0944558521560575, 0.09240246406570841, 0.09240246406570841, 0.09034907597535935, 0.08829568788501027, 0.08829568788501027, 0.08829568788501027, 0.08829568788501027, 0.08624229979466119, 0.08418891170431211, 0.08418891170431211, 0.08418891170431211, 0.08418891170431211, 0.08418891170431211, 0.08418891170431211, 0.08213552361396304, 0.061601642710472276, 0.061601642710472276, 0.059548254620123205, 0.057494866529774126, 0.057494866529774126, 0.055441478439425054, 0.055441478439425054, 0.055441478439425054, 0.0513347022587269, 0.0513347022587269, 0.2751540041067762, 0.2032854209445585, 0.14784394250513347, 0.12525667351129363, 0.13963039014373715, 0.07186858316221766, 0.057494866529774126, 0.049281314168377825, 0.045174537987679675, 0.045174537987679675, 0.045174537987679675, 0.043121149897330596, 0.043121149897330596, 0.043121149897330596, 0.04106776180698152, 0.04106776180698152, 0.04106776180698152, 0.039014373716632446, 0.03696098562628337, 0.03490759753593429, 0.03285420944558522, 0.03285420944558522, 0.8685831622176592, 0.8685831622176592, 0.8726899383983573, 0.8685831622176592, 0.8685831622176592, 0.028747433264887063, 0.030800821355236138, 0.03696098562628337, 0.043121149897330596, 0.04722792607802875, 0.061601642710472276, 0.2669404517453799, 0.2587268993839836, 0.21765913757700206, 0.891170431211499, 0.9240246406570842, 0.9096509240246407, 0.8870636550308009, 0.13141683778234087, 0.10882956878850103, 0.1026694045174538, 0.06981519507186858, 0.06365503080082136, 0.07186858316221766, 0.11909650924024641, 0.10472279260780287, 0.08624229979466119, 0.0513347022587269, 0.049281314168377825, 0.0513347022587269, 0.053388090349075976, 0.0513347022587269, 0.0513347022587269, 0.049281314168377825, 0.055441478439425054, 0.08008213552361396, 0.061601642710472276, 0.08213552361396304, 0.06981519507186858, 0.057494866529774126, 0.06365503080082136, 0.06570841889117043, 0.059548254620123205, 0.053388090349075976, 0.059548254620123205, 0.0513347022587269, 0.0513347022587269, 0.09650924024640657, 0.28336755646817247, 0.28542094455852157, 0.2936344969199179, 0.2648870636550308, 0.2299794661190965, 0.06365503080082136, 0.06776180698151951, 0.06570841889117043, 0.061601642710472276, 0.061601642710472276, 0.061601642710472276, 0.059548254620123205, 0.059548254620123205, 0.059548254620123205, 0.057494866529774126, 0.057494866529774126, 0.057494866529774126, 0.059548254620123205, 0.059548254620123205, 0.061601642710472276, 0.061601642710472276, 0.06365503080082136, 0.06570841889117043, 0.06981519507186858, 0.06981519507186858, 0.8521560574948666, 0.07392197125256673, 0.728952772073922, 0.8151950718685832, 0.8809034907597536, 0.919917864476386, 0.944558521560575, 0.9342915811088296, 0.917864476386037, 0.8439425051334702, 0.7741273100616016, 0.7207392197125256, 0.09034907597535935, 0.17864476386036962, 0.18275154004106775, 0.18275154004106775, 0.17248459958932238, 0.944558521560575, 0.20123203285420946, 0.20944558521560575, 0.21149897330595482, 0.2464065708418891, 0.2792607802874743, 0.28542094455852157, 0.28952772073921973, 0.31006160164271046, 0.32238193018480493, 0.324435318275154, 0.34291581108829566, 0.35728952772073924, 0.3593429158110883, 0.3655030800821355, 0.36960985626283366, 0.36960985626283366, 0.38809034907597534, 0.4004106776180698, 0.4271047227926078, 0.62217659137577], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/WAK.gap.json b/pfam_gap_rates/WAK.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..46e4cc61b8ae68841282f167588d55156b7472b7
--- /dev/null
+++ b/pfam_gap_rates/WAK.gap.json
@@ -0,0 +1 @@
+{"family": "WAK", "n_seqs": 109, "length": 137, "gap_rates": [0.6238532110091743, 0.28440366972477066, 0.01834862385321101, 0.01834862385321101, 0.01834862385321101, 0.01834862385321101, 0.01834862385321101, 0.9174311926605505, 0.01834862385321101, 0.01834862385321101, 0.009174311926605505, 0.009174311926605505, 0.009174311926605505, 0.009174311926605505, 0.009174311926605505, 0.01834862385321101, 0.05504587155963303, 0.06422018348623854, 0.944954128440367, 0.01834862385321101, 0.14678899082568808, 0.06422018348623854, 0.11009174311926606, 0.926605504587156, 0.05504587155963303, 0.01834862385321101, 0.01834862385321101, 0.0, 0.027522935779816515, 0.009174311926605505, 0.06422018348623854, 0.07339449541284404, 0.045871559633027525, 0.05504587155963303, 0.1926605504587156, 0.12844036697247707, 0.09174311926605505, 0.06422018348623854, 0.045871559633027525, 0.8440366972477065, 0.6788990825688074, 0.03669724770642202, 0.009174311926605505, 0.009174311926605505, 0.009174311926605505, 0.009174311926605505, 0.009174311926605505, 0.009174311926605505, 0.0, 0.0, 0.0, 0.0, 0.0, 0.8899082568807339, 0.0, 0.0, 0.01834862385321101, 0.0, 0.0, 0.009174311926605505, 0.027522935779816515, 0.01834862385321101, 0.01834862385321101, 0.944954128440367, 0.07339449541284404, 0.01834862385321101, 0.01834862385321101, 0.01834862385321101, 0.9357798165137615, 0.01834862385321101, 0.01834862385321101, 0.9357798165137615, 0.9357798165137615, 0.01834862385321101, 0.03669724770642202, 0.027522935779816515, 0.045871559633027525, 0.01834862385321101, 0.08256880733944955, 0.027522935779816515, 0.01834862385321101, 0.01834862385321101, 0.01834862385321101, 0.01834862385321101, 0.9357798165137615, 0.9357798165137615, 0.05504587155963303, 0.944954128440367, 0.9357798165137615, 0.08256880733944955, 0.10091743119266056, 0.908256880733945, 0.8990825688073395, 0.09174311926605505, 0.944954128440367, 0.11926605504587157, 0.1559633027522936, 0.1559633027522936, 0.1559633027522936, 0.14678899082568808, 0.14678899082568808, 0.8073394495412844, 0.8990825688073395, 0.8715596330275229, 0.7706422018348624, 0.14678899082568808, 0.14678899082568808, 0.14678899082568808, 0.14678899082568808, 0.1559633027522936, 0.1651376146788991, 0.1651376146788991, 0.1559633027522936, 0.6697247706422018, 0.926605504587156, 0.944954128440367, 0.7247706422018348, 0.4954128440366973, 0.1834862385321101, 0.24770642201834864, 0.24770642201834864, 0.26605504587155965, 0.22935779816513763, 0.46788990825688076, 0.5963302752293578, 0.908256880733945, 0.944954128440367, 0.926605504587156, 0.7981651376146789, 0.5504587155963303, 0.46788990825688076, 0.25688073394495414, 0.26605504587155965, 0.30275229357798167, 0.30275229357798167, 0.41284403669724773, 0.8807339449541285], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/WAPL.gap.json b/pfam_gap_rates/WAPL.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..664ba116faecf2880cc98c7fa2b1746d10bd9082
--- /dev/null
+++ b/pfam_gap_rates/WAPL.gap.json
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\ No newline at end of file
diff --git a/pfam_gap_rates/WbqC.gap.json b/pfam_gap_rates/WbqC.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..3e6a363f7858e2c36b4bad48e4fd8e230c234bc8
--- /dev/null
+++ b/pfam_gap_rates/WbqC.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/XdhC_CoxI.gap.json b/pfam_gap_rates/XdhC_CoxI.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..2ceeb974c3aec351b5846208f4e1329858e1b5f9
--- /dev/null
+++ b/pfam_gap_rates/XdhC_CoxI.gap.json
@@ -0,0 +1 @@
+{"family": "XdhC_CoxI", "n_seqs": 1317, "length": 69, "gap_rates": [0.6848899012908124, 0.4198936977980258, 0.2733485193621868, 0.19286256643887623, 0.14350797266514806, 0.1017463933181473, 0.06529992406985573, 0.051632498101746395, 0.033409263477600606, 0.025816249050873197, 0.019741837509491267, 0.018223234624145785, 0.017463933181473046, 0.016704631738800303, 0.015186028853454821, 0.09870918754745633, 0.09491268033409264, 0.06757782839787396, 0.06226271829916477, 0.018223234624145785, 0.016704631738800303, 0.019741837509491267, 0.012908124525436599, 0.010630220197418374, 0.012908124525436599, 0.011389521640091117, 0.009111617312072893, 0.0030372057706909645, 0.0030372057706909645, 0.0030372057706909645, 0.002277904328018223, 0.0015186028853454822, 0.0015186028853454822, 0.0030372057706909645, 0.21488230827638571, 0.017463933181473046, 0.0030372057706909645, 0.002277904328018223, 0.0037965072133637054, 0.0030372057706909645, 0.0037965072133637054, 0.0037965072133637054, 0.004555808656036446, 0.004555808656036446, 0.004555808656036446, 0.004555808656036446, 0.005315110098709187, 0.005315110098709187, 0.005315110098709187, 0.005315110098709187, 0.006074411541381929, 0.008352315869400152, 0.012908124525436599, 0.018982536066818528, 0.02201974183750949, 0.04176157934700076, 0.05315110098709187, 0.06226271829916477, 0.10326499620349279, 0.10250569476082004, 0.15034168564920272, 0.1921032649962035, 0.22399392558845863, 0.9476082004555809, 0.29233105542900534, 0.3325740318906606, 0.37965072133637057, 0.42596810933940776, 0.5785876993166287], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/YEATS.gap.json b/pfam_gap_rates/YEATS.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..3cfd2b198164e993165f0409d0d49c77d884368f
--- /dev/null
+++ b/pfam_gap_rates/YEATS.gap.json
@@ -0,0 +1 @@
+{"family": "YEATS", "n_seqs": 679, "length": 97, "gap_rates": [0.33431516936671574, 0.11929307805596466, 0.06774668630338733, 0.060382916053019146, 0.05743740795287187, 0.05743740795287187, 0.05743740795287187, 0.055964653902798235, 0.055964653902798235, 0.055964653902798235, 0.055964653902798235, 0.7039764359351989, 0.055964653902798235, 0.09131075110456553, 0.9175257731958762, 0.9278350515463918, 0.9337260677466863, 0.9381443298969072, 0.9440353460972017, 0.9396170839469808, 0.9366715758468336, 0.930780559646539, 0.9234167893961709, 0.8998527245949927, 0.10898379970544919, 0.09278350515463918, 0.07658321060382917, 0.8321060382916053, 0.8026509572901326, 0.05743740795287187, 0.036818851251840944, 0.033873343151693665, 0.033873343151693665, 0.033873343151693665, 0.03240058910162003, 0.03240058910162003, 0.030927835051546393, 0.030927835051546393, 0.030927835051546393, 0.030927835051546393, 0.030927835051546393, 0.029455081001472753, 0.029455081001472753, 0.029455081001472753, 0.029455081001472753, 0.029455081001472753, 0.027982326951399118, 0.027982326951399118, 0.9278350515463918, 0.025036818851251842, 0.03240058910162003, 0.020618556701030927, 0.020618556701030927, 0.01914580265095729, 0.017673048600883652, 0.946980854197349, 0.9366715758468336, 0.014727540500736377, 0.014727540500736377, 0.014727540500736377, 0.017673048600883652, 0.020618556701030927, 0.022091310751104567, 0.023564064801178203, 0.022091310751104567, 0.022091310751104567, 0.022091310751104567, 0.022091310751104567, 0.022091310751104567, 0.022091310751104567, 0.022091310751104567, 0.023564064801178203, 0.023564064801178203, 0.026509572901325478, 0.027982326951399118, 0.025036818851251842, 0.026509572901325478, 0.029455081001472753, 0.05154639175257732, 0.06332842415316642, 0.21354933726067746, 0.5861561119293078, 0.14432989690721648, 0.10309278350515463, 0.07511045655375552, 0.0662739322533137, 0.06774668630338733, 0.07069219440353461, 0.07363770250368189, 0.07216494845360824, 0.0780559646539028, 0.0780559646539028, 0.08247422680412371, 0.08689248895434462, 0.12960235640648013, 0.2268041237113402, 0.6391752577319587], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/YadA_head.gap.json b/pfam_gap_rates/YadA_head.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b6f04199b7fc779ac1efad06bc422c9518905209
--- /dev/null
+++ b/pfam_gap_rates/YadA_head.gap.json
@@ -0,0 +1 @@
+{"family": "YadA_head", "n_seqs": 1006, "length": 27, "gap_rates": [0.2922465208747515, 0.20079522862823063, 0.13916500994035785, 0.0775347912524851, 0.032803180914512925, 0.008946322067594433, 0.0009940357852882703, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0009940357852882703, 0.0009940357852882703, 0.0009940357852882703, 0.003976143141153081, 0.007952286282306162, 0.05864811133200795, 0.20874751491053678, 0.3290258449304175], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/YcaO.gap.json b/pfam_gap_rates/YcaO.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..279146464552f4c36cb1c204c77960336af8b0f6
--- /dev/null
+++ b/pfam_gap_rates/YcaO.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Ycf9.gap.json b/pfam_gap_rates/Ycf9.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..2f50fe30a7b6e30403f8836fc026e4cb7fb26806
--- /dev/null
+++ b/pfam_gap_rates/Ycf9.gap.json
@@ -0,0 +1 @@
+{"family": "Ycf9", "n_seqs": 107, "length": 58, "gap_rates": [0.4672897196261682, 0.09345794392523364, 0.08411214953271028, 0.037383177570093455, 0.037383177570093455, 0.037383177570093455, 0.037383177570093455, 0.037383177570093455, 0.028037383177570093, 0.028037383177570093, 0.028037383177570093, 0.018691588785046728, 0.018691588785046728, 0.018691588785046728, 0.018691588785046728, 0.018691588785046728, 0.009345794392523364, 0.009345794392523364, 0.009345794392523364, 0.009345794392523364, 0.009345794392523364, 0.009345794392523364, 0.009345794392523364, 0.009345794392523364, 0.009345794392523364, 0.018691588785046728, 0.018691588785046728, 0.009345794392523364, 0.009345794392523364, 0.018691588785046728, 0.018691588785046728, 0.028037383177570093, 0.028037383177570093, 0.028037383177570093, 0.028037383177570093, 0.028037383177570093, 0.028037383177570093, 0.028037383177570093, 0.028037383177570093, 0.028037383177570093, 0.028037383177570093, 0.028037383177570093, 0.028037383177570093, 0.028037383177570093, 0.028037383177570093, 0.028037383177570093, 0.028037383177570093, 0.037383177570093455, 0.028037383177570093, 0.028037383177570093, 0.028037383177570093, 0.037383177570093455, 0.037383177570093455, 0.037383177570093455, 0.037383177570093455, 0.037383177570093455, 0.09345794392523364, 0.12149532710280374], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/YiiD_C.gap.json b/pfam_gap_rates/YiiD_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..73550eaca257b05096cd6431729e4924a5008e12
--- /dev/null
+++ b/pfam_gap_rates/YiiD_C.gap.json
@@ -0,0 +1 @@
+{"family": "YiiD_C", "n_seqs": 126, "length": 146, "gap_rates": [0.6904761904761905, 0.31746031746031744, 0.1984126984126984, 0.14285714285714285, 0.11904761904761904, 0.09523809523809523, 0.0873015873015873, 0.07936507936507936, 0.07936507936507936, 0.05555555555555555, 0.03968253968253968, 0.031746031746031744, 0.031746031746031744, 0.031746031746031744, 0.031746031746031744, 0.023809523809523808, 0.023809523809523808, 0.023809523809523808, 0.015873015873015872, 0.015873015873015872, 0.015873015873015872, 0.015873015873015872, 0.015873015873015872, 0.015873015873015872, 0.023809523809523808, 0.015873015873015872, 0.015873015873015872, 0.015873015873015872, 0.023809523809523808, 0.015873015873015872, 0.015873015873015872, 0.015873015873015872, 0.015873015873015872, 0.015873015873015872, 0.015873015873015872, 0.015873015873015872, 0.015873015873015872, 0.015873015873015872, 0.015873015873015872, 0.015873015873015872, 0.015873015873015872, 0.015873015873015872, 0.015873015873015872, 0.015873015873015872, 0.015873015873015872, 0.007936507936507936, 0.007936507936507936, 0.007936507936507936, 0.007936507936507936, 0.007936507936507936, 0.007936507936507936, 0.007936507936507936, 0.007936507936507936, 0.007936507936507936, 0.007936507936507936, 0.007936507936507936, 0.023809523809523808, 0.023809523809523808, 0.023809523809523808, 0.031746031746031744, 0.023809523809523808, 0.015873015873015872, 0.015873015873015872, 0.015873015873015872, 0.015873015873015872, 0.015873015873015872, 0.015873015873015872, 0.023809523809523808, 0.023809523809523808, 0.023809523809523808, 0.015873015873015872, 0.047619047619047616, 0.047619047619047616, 0.9285714285714286, 0.015873015873015872, 0.015873015873015872, 0.023809523809523808, 0.015873015873015872, 0.015873015873015872, 0.015873015873015872, 0.015873015873015872, 0.015873015873015872, 0.015873015873015872, 0.015873015873015872, 0.015873015873015872, 0.015873015873015872, 0.015873015873015872, 0.015873015873015872, 0.015873015873015872, 0.015873015873015872, 0.015873015873015872, 0.015873015873015872, 0.015873015873015872, 0.015873015873015872, 0.015873015873015872, 0.015873015873015872, 0.015873015873015872, 0.015873015873015872, 0.015873015873015872, 0.015873015873015872, 0.015873015873015872, 0.49206349206349204, 0.4126984126984127, 0.40476190476190477, 0.047619047619047616, 0.03968253968253968, 0.015873015873015872, 0.023809523809523808, 0.023809523809523808, 0.023809523809523808, 0.031746031746031744, 0.031746031746031744, 0.031746031746031744, 0.031746031746031744, 0.031746031746031744, 0.031746031746031744, 0.031746031746031744, 0.031746031746031744, 0.03968253968253968, 0.03968253968253968, 0.03968253968253968, 0.03968253968253968, 0.03968253968253968, 0.047619047619047616, 0.03968253968253968, 0.03968253968253968, 0.03968253968253968, 0.03968253968253968, 0.047619047619047616, 0.9126984126984127, 0.047619047619047616, 0.06349206349206349, 0.06349206349206349, 0.05555555555555555, 0.9365079365079365, 0.047619047619047616, 0.047619047619047616, 0.05555555555555555, 0.05555555555555555, 0.05555555555555555, 0.05555555555555555, 0.05555555555555555, 0.06349206349206349, 0.06349206349206349, 0.07142857142857142, 0.24603174603174602], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/YkuD_2.gap.json b/pfam_gap_rates/YkuD_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..3f1ce22705ed2d2afaf3fc83bd3b53304a9c2648
--- /dev/null
+++ b/pfam_gap_rates/YkuD_2.gap.json
@@ -0,0 +1 @@
+{"family": "YkuD_2", "n_seqs": 215, "length": 179, "gap_rates": [0.8744186046511628, 0.6465116279069767, 0.4930232558139535, 0.3581395348837209, 0.32558139534883723, 0.26976744186046514, 0.20465116279069767, 0.1813953488372093, 0.14418604651162792, 0.13488372093023257, 0.11627906976744186, 0.11162790697674418, 0.09767441860465116, 0.09767441860465116, 0.09302325581395349, 0.08372093023255814, 0.07441860465116279, 0.07441860465116279, 0.07441860465116279, 0.06976744186046512, 0.06046511627906977, 0.06046511627906977, 0.06046511627906977, 0.05581395348837209, 0.06046511627906977, 0.10697674418604651, 0.28837209302325584, 0.24186046511627907, 0.8, 0.9488372093023256, 0.5488372093023256, 0.037209302325581395, 0.03255813953488372, 0.03255813953488372, 0.03255813953488372, 0.03255813953488372, 0.03255813953488372, 0.03255813953488372, 0.03255813953488372, 0.03255813953488372, 0.03255813953488372, 0.03255813953488372, 0.03255813953488372, 0.03255813953488372, 0.03255813953488372, 0.03255813953488372, 0.03255813953488372, 0.03255813953488372, 0.03255813953488372, 0.03255813953488372, 0.03255813953488372, 0.03255813953488372, 0.03255813953488372, 0.03255813953488372, 0.03255813953488372, 0.03255813953488372, 0.22325581395348837, 0.05116279069767442, 0.06046511627906977, 0.03255813953488372, 0.06046511627906977, 0.03255813953488372, 0.03255813953488372, 0.03255813953488372, 0.03255813953488372, 0.03255813953488372, 0.04186046511627907, 0.9395348837209302, 0.9255813953488372, 0.03255813953488372, 0.04186046511627907, 0.046511627906976744, 0.04186046511627907, 0.7581395348837209, 0.7813953488372093, 0.7162790697674418, 0.04186046511627907, 0.04186046511627907, 0.04186046511627907, 0.04186046511627907, 0.04186046511627907, 0.04186046511627907, 0.04186046511627907, 0.046511627906976744, 0.046511627906976744, 0.04186046511627907, 0.04186046511627907, 0.04186046511627907, 0.04186046511627907, 0.04186046511627907, 0.04186046511627907, 0.04186046511627907, 0.04186046511627907, 0.04186046511627907, 0.04186046511627907, 0.04186046511627907, 0.04186046511627907, 0.04186046511627907, 0.04186046511627907, 0.04186046511627907, 0.046511627906976744, 0.037209302325581395, 0.03255813953488372, 0.03255813953488372, 0.03255813953488372, 0.03255813953488372, 0.03255813953488372, 0.023255813953488372, 0.023255813953488372, 0.023255813953488372, 0.9162790697674419, 0.9162790697674419, 0.023255813953488372, 0.023255813953488372, 0.023255813953488372, 0.018604651162790697, 0.018604651162790697, 0.018604651162790697, 0.018604651162790697, 0.3627906976744186, 0.037209302325581395, 0.018604651162790697, 0.018604651162790697, 0.018604651162790697, 0.018604651162790697, 0.018604651162790697, 0.018604651162790697, 0.023255813953488372, 0.023255813953488372, 0.023255813953488372, 0.023255813953488372, 0.023255813953488372, 0.023255813953488372, 0.023255813953488372, 0.023255813953488372, 0.027906976744186046, 0.027906976744186046, 0.027906976744186046, 0.03255813953488372, 0.05116279069767442, 0.06046511627906977, 0.06046511627906977, 0.9348837209302325, 0.06046511627906977, 0.06976744186046512, 0.10697674418604651, 0.09302325581395349, 0.06046511627906977, 0.04186046511627907, 0.05116279069767442, 0.046511627906976744, 0.027906976744186046, 0.027906976744186046, 0.027906976744186046, 0.027906976744186046, 0.027906976744186046, 0.027906976744186046, 0.027906976744186046, 0.027906976744186046, 0.027906976744186046, 0.027906976744186046, 0.027906976744186046, 0.027906976744186046, 0.027906976744186046, 0.027906976744186046, 0.027906976744186046, 0.027906976744186046, 0.027906976744186046, 0.027906976744186046, 0.037209302325581395, 0.037209302325581395, 0.037209302325581395, 0.04186046511627907, 0.07906976744186046, 0.12093023255813953, 0.12093023255813953, 0.13488372093023257, 0.16279069767441862, 0.4046511627906977], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/YolD.gap.json b/pfam_gap_rates/YolD.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b76d4bd821d1b64e38f9be64aab59d4e2c2e0191
--- /dev/null
+++ b/pfam_gap_rates/YolD.gap.json
@@ -0,0 +1 @@
+{"family": "YolD", "n_seqs": 251, "length": 95, "gap_rates": [0.46215139442231074, 0.38247011952191234, 0.38247011952191234, 0.3784860557768924, 0.3545816733067729, 0.3426294820717131, 0.32270916334661354, 0.3187250996015936, 0.3107569721115538, 0.29880478087649404, 0.2908366533864542, 0.28286852589641437, 0.250996015936255, 0.22310756972111553, 0.21115537848605578, 0.18725099601593626, 0.1394422310756972, 0.14741035856573706, 0.12350597609561753, 0.0796812749003984, 0.07171314741035857, 0.05976095617529881, 0.055776892430278883, 0.055776892430278883, 0.055776892430278883, 0.05179282868525897, 0.05179282868525897, 0.04780876494023904, 0.043824701195219126, 0.043824701195219126, 0.043824701195219126, 0.043824701195219126, 0.043824701195219126, 0.043824701195219126, 0.0199203187250996, 0.0199203187250996, 0.099601593625498, 0.027888446215139442, 0.01593625498007968, 0.00796812749003984, 0.00796812749003984, 0.01593625498007968, 0.01593625498007968, 0.01593625498007968, 0.01593625498007968, 0.01593625498007968, 0.01593625498007968, 0.0199203187250996, 0.0199203187250996, 0.02390438247011952, 0.02390438247011952, 0.04780876494023904, 0.05976095617529881, 0.05179282868525897, 0.05976095617529881, 0.055776892430278883, 0.035856573705179286, 0.035856573705179286, 0.02390438247011952, 0.02390438247011952, 0.02390438247011952, 0.02390438247011952, 0.03187250996015936, 0.035856573705179286, 0.0398406374501992, 0.0398406374501992, 0.06772908366533864, 0.06772908366533864, 0.043824701195219126, 0.035856573705179286, 0.0398406374501992, 0.0398406374501992, 0.0398406374501992, 0.0398406374501992, 0.043824701195219126, 0.05179282868525897, 0.05179282868525897, 0.055776892430278883, 0.16334661354581673, 0.2908366533864542, 0.2908366533864542, 0.32270916334661354, 0.601593625498008, 0.9163346613545816, 0.08764940239043825, 0.07569721115537849, 0.07569721115537849, 0.07569721115537849, 0.08366533864541832, 0.08764940239043825, 0.08764940239043825, 0.08764940239043825, 0.09561752988047809, 0.15139442231075698, 0.5418326693227091], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/YqcI_YcgG.gap.json b/pfam_gap_rates/YqcI_YcgG.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..6211a83ce737692e5b5aab911fce21ea59bdbeaa
--- /dev/null
+++ b/pfam_gap_rates/YqcI_YcgG.gap.json
@@ -0,0 +1 @@
+{"family": "YqcI_YcgG", "n_seqs": 146, "length": 227, "gap_rates": [0.589041095890411, 0.4315068493150685, 0.3561643835616438, 0.2876712328767123, 0.2534246575342466, 0.2191780821917808, 0.8013698630136986, 0.7465753424657534, 0.13013698630136986, 0.11643835616438356, 0.1095890410958904, 0.1095890410958904, 0.10273972602739725, 0.0821917808219178, 0.0821917808219178, 0.0821917808219178, 0.0821917808219178, 0.0821917808219178, 0.0821917808219178, 0.07534246575342465, 0.07534246575342465, 0.0684931506849315, 0.0684931506849315, 0.0684931506849315, 0.0684931506849315, 0.07534246575342465, 0.07534246575342465, 0.0684931506849315, 0.0684931506849315, 0.0684931506849315, 0.06164383561643835, 0.06164383561643835, 0.0547945205479452, 0.2671232876712329, 0.2945205479452055, 0.273972602739726, 0.2602739726027397, 0.9383561643835616, 0.9383561643835616, 0.0684931506849315, 0.0410958904109589, 0.0410958904109589, 0.0410958904109589, 0.03424657534246575, 0.03424657534246575, 0.03424657534246575, 0.0273972602739726, 0.0273972602739726, 0.0273972602739726, 0.0273972602739726, 0.0273972602739726, 0.0273972602739726, 0.0273972602739726, 0.0273972602739726, 0.0273972602739726, 0.0273972602739726, 0.0273972602739726, 0.4726027397260274, 0.0684931506849315, 0.0273972602739726, 0.0273972602739726, 0.9315068493150684, 0.9383561643835616, 0.910958904109589, 0.0273972602739726, 0.0273972602739726, 0.0273972602739726, 0.0273972602739726, 0.0273972602739726, 0.0273972602739726, 0.03424657534246575, 0.03424657534246575, 0.03424657534246575, 0.03424657534246575, 0.03424657534246575, 0.0410958904109589, 0.4863013698630137, 0.863013698630137, 0.863013698630137, 0.821917808219178, 0.0821917808219178, 0.04794520547945205, 0.0410958904109589, 0.0410958904109589, 0.0410958904109589, 0.0410958904109589, 0.0410958904109589, 0.03424657534246575, 0.03424657534246575, 0.03424657534246575, 0.03424657534246575, 0.03424657534246575, 0.03424657534246575, 0.03424657534246575, 0.03424657534246575, 0.0273972602739726, 0.0273972602739726, 0.0273972602739726, 0.02054794520547945, 0.02054794520547945, 0.02054794520547945, 0.02054794520547945, 0.0273972602739726, 0.0273972602739726, 0.0273972602739726, 0.773972602739726, 0.8767123287671232, 0.7671232876712328, 0.0273972602739726, 0.03424657534246575, 0.03424657534246575, 0.0547945205479452, 0.03424657534246575, 0.03424657534246575, 0.0273972602739726, 0.0273972602739726, 0.02054794520547945, 0.02054794520547945, 0.03424657534246575, 0.03424657534246575, 0.03424657534246575, 0.02054794520547945, 0.02054794520547945, 0.02054794520547945, 0.02054794520547945, 0.02054794520547945, 0.02054794520547945, 0.02054794520547945, 0.02054794520547945, 0.02054794520547945, 0.02054794520547945, 0.02054794520547945, 0.02054794520547945, 0.02054794520547945, 0.02054794520547945, 0.02054794520547945, 0.02054794520547945, 0.02054794520547945, 0.02054794520547945, 0.02054794520547945, 0.3698630136986301, 0.0273972602739726, 0.0273972602739726, 0.0273972602739726, 0.0273972602739726, 0.0273972602739726, 0.0273972602739726, 0.0273972602739726, 0.0273972602739726, 0.03424657534246575, 0.03424657534246575, 0.6986301369863014, 0.0410958904109589, 0.0410958904109589, 0.0410958904109589, 0.0410958904109589, 0.0410958904109589, 0.0410958904109589, 0.0410958904109589, 0.04794520547945205, 0.04794520547945205, 0.04794520547945205, 0.04794520547945205, 0.04794520547945205, 0.07534246575342465, 0.07534246575342465, 0.0821917808219178, 0.9452054794520548, 0.4452054794520548, 0.08904109589041095, 0.08904109589041095, 0.0821917808219178, 0.0821917808219178, 0.0821917808219178, 0.0821917808219178, 0.0821917808219178, 0.0821917808219178, 0.0821917808219178, 0.0821917808219178, 0.0821917808219178, 0.0821917808219178, 0.0821917808219178, 0.0821917808219178, 0.0821917808219178, 0.08904109589041095, 0.0958904109589041, 0.0958904109589041, 0.10273972602739725, 0.4520547945205479, 0.10273972602739725, 0.10273972602739725, 0.10273972602739725, 0.10273972602739725, 0.1095890410958904, 0.1095890410958904, 0.1095890410958904, 0.1095890410958904, 0.1095890410958904, 0.1095890410958904, 0.1095890410958904, 0.1095890410958904, 0.1095890410958904, 0.1095890410958904, 0.1095890410958904, 0.4794520547945205, 0.4657534246575342, 0.1232876712328767, 0.1232876712328767, 0.13013698630136986, 0.13013698630136986, 0.13013698630136986, 0.13013698630136986, 0.13013698630136986, 0.13013698630136986, 0.13013698630136986, 0.13013698630136986, 0.13013698630136986, 0.13013698630136986, 0.136986301369863, 0.726027397260274, 0.5205479452054794, 0.136986301369863, 0.136986301369863, 0.136986301369863, 0.1506849315068493, 0.1506849315068493, 0.4315068493150685], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/YscW.gap.json b/pfam_gap_rates/YscW.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..2324185139b3a9837c4de0d66d8ad474c41714a5
--- /dev/null
+++ b/pfam_gap_rates/YscW.gap.json
@@ -0,0 +1 @@
+{"family": "YscW", "n_seqs": 147, "length": 107, "gap_rates": [0.8367346938775511, 0.46258503401360546, 0.272108843537415, 0.1360544217687075, 0.08843537414965986, 0.08163265306122448, 0.08163265306122448, 0.07482993197278912, 0.06802721088435375, 0.07482993197278912, 0.08843537414965986, 0.10204081632653061, 0.07482993197278912, 0.061224489795918366, 0.05442176870748299, 0.04081632653061224, 0.04081632653061224, 0.04081632653061224, 0.034013605442176874, 0.027210884353741496, 0.027210884353741496, 0.027210884353741496, 0.02040816326530612, 0.02040816326530612, 0.02040816326530612, 0.02040816326530612, 0.02040816326530612, 0.02040816326530612, 0.02040816326530612, 0.07482993197278912, 0.2108843537414966, 0.20408163265306123, 0.14285714285714285, 0.12244897959183673, 0.05442176870748299, 0.034013605442176874, 0.034013605442176874, 0.02040816326530612, 0.02040816326530612, 0.02040816326530612, 0.02040816326530612, 0.02040816326530612, 0.02040816326530612, 0.02040816326530612, 0.013605442176870748, 0.02040816326530612, 0.02040816326530612, 0.02040816326530612, 0.013605442176870748, 0.54421768707483, 0.1360544217687075, 0.02040816326530612, 0.02040816326530612, 0.006802721088435374, 0.0, 0.0, 0.0, 0.006802721088435374, 0.006802721088435374, 0.006802721088435374, 0.006802721088435374, 0.0, 0.07482993197278912, 0.06802721088435375, 0.05442176870748299, 0.047619047619047616, 0.047619047619047616, 0.034013605442176874, 0.034013605442176874, 0.027210884353741496, 0.034013605442176874, 0.061224489795918366, 0.047619047619047616, 0.047619047619047616, 0.05442176870748299, 0.047619047619047616, 0.047619047619047616, 0.08163265306122448, 0.9387755102040817, 0.061224489795918366, 0.06802721088435375, 0.08163265306122448, 0.08163265306122448, 0.08163265306122448, 0.08843537414965986, 0.09523809523809523, 0.10204081632653061, 0.10884353741496598, 0.11564625850340136, 0.14285714285714285, 0.17006802721088435, 0.19727891156462585, 0.272108843537415, 0.2857142857142857, 0.3877551020408163, 0.3945578231292517, 0.4217687074829932, 0.4421768707482993, 0.7142857142857143, 0.5034013605442177, 0.4897959183673469, 0.5170068027210885, 0.5238095238095238, 0.5714285714285714, 0.5986394557823129, 0.7074829931972789, 0.8027210884353742], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Zona_pellucida.gap.json b/pfam_gap_rates/Zona_pellucida.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..fbb1d9514c140aa589d6938bb130e68c4eeda5b8
--- /dev/null
+++ b/pfam_gap_rates/Zona_pellucida.gap.json
@@ -0,0 +1 @@
+{"family": "Zona_pellucida", "n_seqs": 1423, "length": 349, "gap_rates": [0.29444834855938157, 0.29093464511595224, 0.28742094167252286, 0.28601546029515107, 0.9374560787069571, 0.2817990161630358, 0.2684469430780042, 0.2656359803232607, 0.2628250175685172, 0.2600140548137737, 0.258608573436402, 0.2579058327477161, 0.2579058327477161, 0.258608573436402, 0.2579058327477161, 0.258608573436402, 0.7090653548840478, 0.3921293042867182, 0.3612087139845397, 0.31834153197470133, 0.6352775825720309, 0.3120168657765285, 0.303583977512298, 0.30147575544624033, 0.27758257203092057, 0.286718200983837, 0.2937456078706957, 0.29304286718200984, 0.3070976809557273, 0.4174279690794097, 0.4862965565706254, 0.7111735769501054, 0.7947997189037245, 0.9304286718200984, 0.9451862262825017, 0.9177793394237527, 0.7533380182712579, 0.5418130709768095, 0.2410400562192551, 0.20801124385101896, 0.1960646521433591, 0.19465917076598735, 0.20590302178496134, 0.2044975404075896, 0.23963457484188336, 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\ No newline at end of file
diff --git a/pfam_gap_rates/adh_short.gap.json b/pfam_gap_rates/adh_short.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..6194a2a2f7b99e74796526f5797e5d31a6527886
--- /dev/null
+++ b/pfam_gap_rates/adh_short.gap.json
@@ -0,0 +1 @@
+{"family": "adh_short", "n_seqs": 5000, "length": 216, "gap_rates": [0.5742, 0.2352, 0.133, 0.0922, 0.087, 0.0844, 0.082, 0.0806, 0.0794, 0.0788, 0.0768, 0.0754, 0.074, 0.0738, 0.0732, 0.0724, 0.0722, 0.0718, 0.0716, 0.071, 0.0714, 0.0718, 0.0696, 0.0764, 0.0692, 0.0668, 0.065, 0.0654, 0.0654, 0.8916, 0.0664, 0.0656, 0.0648, 0.064, 0.0744, 0.0698, 0.082, 0.0796, 0.1536, 0.1388, 0.1242, 0.1092, 0.0872, 0.0806, 0.1004, 0.1012, 0.147, 0.2738, 0.7502, 0.9214, 0.8818, 0.6108, 0.3058, 0.275, 0.2108, 0.0894, 0.0688, 0.066, 0.0636, 0.0604, 0.0582, 0.056, 0.0552, 0.0556, 0.0674, 0.0642, 0.062, 0.0606, 0.0604, 0.0592, 0.0578, 0.057, 0.0554, 0.0546, 0.055, 0.0594, 0.152, 0.122, 0.1148, 0.1084, 0.924, 0.8654, 0.0676, 0.0568, 0.0552, 0.054, 0.053, 0.0534, 0.0542, 0.0542, 0.0548, 0.0556, 0.0572, 0.0572, 0.8348, 0.9002, 0.9378, 0.9218, 0.8832, 0.7036, 0.188, 0.1736, 0.1194, 0.1006, 0.0922, 0.0938, 0.1054, 0.0918, 0.0802, 0.0748, 0.0746, 0.0742, 0.0736, 0.9102, 0.0726, 0.0728, 0.0724, 0.0692, 0.0694, 0.0694, 0.0692, 0.07, 0.07, 0.0714, 0.072, 0.0718, 0.072, 0.0722, 0.073, 0.0726, 0.0746, 0.0754, 0.0768, 0.0776, 0.0778, 0.078, 0.1446, 0.0994, 0.8224, 0.8708, 0.9268, 0.8976, 0.8502, 0.7432, 0.154, 0.1232, 0.0966, 0.0964, 0.095, 0.0956, 0.0964, 0.0968, 0.0974, 0.0984, 0.0988, 0.0996, 0.1036, 0.119, 0.134, 0.9322, 0.1618, 0.1614, 0.1672, 0.174, 0.1812, 0.1846, 0.1848, 0.1864, 0.1852, 0.1858, 0.1872, 0.1866, 0.1876, 0.1882, 0.1882, 0.19, 0.1904, 0.191, 0.1918, 0.1922, 0.1932, 0.193, 0.194, 0.1952, 0.1954, 0.1972, 0.198, 0.2004, 0.2046, 0.2062, 0.2314, 0.2594, 0.8882, 0.8696, 0.215, 0.2094, 0.2102, 0.2114, 0.2118, 0.2128, 0.2162, 0.2208, 0.2278, 0.2358, 0.2558, 0.2562, 0.2636, 0.2702, 0.2908, 0.3322, 0.4092, 0.518, 0.6502, 0.7658, 0.8546, 0.9374], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/bPH_1.gap.json b/pfam_gap_rates/bPH_1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..376b30ddb951976d545d91d98f349783126aa412
--- /dev/null
+++ b/pfam_gap_rates/bPH_1.gap.json
@@ -0,0 +1 @@
+{"family": "bPH_1", "n_seqs": 356, "length": 127, "gap_rates": [0.9325842696629213, 0.47752808988764045, 0.3904494382022472, 0.3455056179775281, 0.32303370786516855, 0.28370786516853935, 0.25, 0.23876404494382023, 0.22191011235955055, 0.21348314606741572, 0.20224719101123595, 0.19662921348314608, 0.18820224719101122, 0.16292134831460675, 0.8314606741573034, 0.1348314606741573, 0.1151685393258427, 0.09831460674157304, 0.0898876404494382, 0.08146067415730338, 0.06741573033707865, 0.056179775280898875, 0.03932584269662921, 0.028089887640449437, 0.025280898876404494, 0.016853932584269662, 0.016853932584269662, 0.016853932584269662, 0.016853932584269662, 0.016853932584269662, 0.016853932584269662, 0.016853932584269662, 0.014044943820224719, 0.014044943820224719, 0.014044943820224719, 0.014044943820224719, 0.014044943820224719, 0.014044943820224719, 0.014044943820224719, 0.011235955056179775, 0.011235955056179775, 0.011235955056179775, 0.011235955056179775, 0.011235955056179775, 0.011235955056179775, 0.011235955056179775, 0.014044943820224719, 0.014044943820224719, 0.014044943820224719, 0.016853932584269662, 0.016853932584269662, 0.016853932584269662, 0.016853932584269662, 0.016853932584269662, 0.014044943820224719, 0.03651685393258427, 0.019662921348314606, 0.025280898876404494, 0.008426966292134831, 0.016853932584269662, 0.011235955056179775, 0.011235955056179775, 0.011235955056179775, 0.011235955056179775, 0.014044943820224719, 0.016853932584269662, 0.014044943820224719, 0.016853932584269662, 0.014044943820224719, 0.014044943820224719, 0.014044943820224719, 0.014044943820224719, 0.016853932584269662, 0.8174157303370787, 0.8174157303370787, 0.016853932584269662, 0.016853932584269662, 0.016853932584269662, 0.016853932584269662, 0.016853932584269662, 0.016853932584269662, 0.016853932584269662, 0.016853932584269662, 0.019662921348314606, 0.019662921348314606, 0.02247191011235955, 0.019662921348314606, 0.898876404494382, 0.016853932584269662, 0.05898876404494382, 0.02247191011235955, 0.019662921348314606, 0.016853932584269662, 0.019662921348314606, 0.019662921348314606, 0.019662921348314606, 0.02247191011235955, 0.02247191011235955, 0.21348314606741572, 0.05898876404494382, 0.0449438202247191, 0.047752808988764044, 0.16292134831460675, 0.3258426966292135, 0.6910112359550562, 0.05056179775280899, 0.05056179775280899, 0.05056179775280899, 0.05056179775280899, 0.05056179775280899, 0.05056179775280899, 0.05056179775280899, 0.05337078651685393, 0.05056179775280899, 0.06460674157303371, 0.05337078651685393, 0.05898876404494382, 0.05898876404494382, 0.05898876404494382, 0.05898876404494382, 0.05898876404494382, 0.05898876404494382, 0.06179775280898876, 0.09269662921348315, 0.14606741573033707, 0.36235955056179775, 0.7865168539325843], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/bact-PGI_C.gap.json b/pfam_gap_rates/bact-PGI_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d9d021ed9aac07d7cd9933718e26b0096b4092b5
--- /dev/null
+++ b/pfam_gap_rates/bact-PGI_C.gap.json
@@ -0,0 +1 @@
+{"family": "bact-PGI_C", "n_seqs": 382, "length": 173, "gap_rates": [0.8586387434554974, 0.4031413612565445, 0.225130890052356, 0.13612565445026178, 0.10732984293193717, 0.08376963350785341, 0.060209424083769635, 0.0549738219895288, 0.05235602094240838, 0.04450261780104712, 0.041884816753926704, 0.041884816753926704, 0.041884816753926704, 0.03664921465968586, 0.03926701570680628, 0.031413612565445025, 0.031413612565445025, 0.020942408376963352, 0.01832460732984293, 0.01832460732984293, 0.01832460732984293, 0.6020942408376964, 0.02356020942408377, 0.01832460732984293, 0.01832460732984293, 0.01832460732984293, 0.01832460732984293, 0.01832460732984293, 0.020942408376963352, 0.028795811518324606, 0.020942408376963352, 0.01832460732984293, 0.01832460732984293, 0.01832460732984293, 0.01832460732984293, 0.01832460732984293, 0.015706806282722512, 0.015706806282722512, 0.015706806282722512, 0.015706806282722512, 0.015706806282722512, 0.015706806282722512, 0.015706806282722512, 0.013089005235602094, 0.013089005235602094, 0.013089005235602094, 0.015706806282722512, 0.013089005235602094, 0.013089005235602094, 0.03926701570680628, 0.015706806282722512, 0.015706806282722512, 0.020942408376963352, 0.02617801047120419, 0.031413612565445025, 0.02617801047120419, 0.01832460732984293, 0.01832460732984293, 0.015706806282722512, 0.01832460732984293, 0.013089005235602094, 0.6989528795811518, 0.7722513089005235, 0.7827225130890052, 0.7853403141361257, 0.7958115183246073, 0.8141361256544503, 0.8324607329842932, 0.8664921465968587, 0.9240837696335078, 0.9424083769633508, 0.9057591623036649, 0.8481675392670157, 0.819371727748691, 0.7958115183246073, 0.7853403141361257, 0.7827225130890052, 0.7801047120418848, 0.7120418848167539, 0.6910994764397905, 0.22774869109947643, 0.28272251308900526, 0.24607329842931938, 0.09424083769633508, 0.02617801047120419, 0.02356020942408377, 0.020942408376963352, 0.020942408376963352, 0.020942408376963352, 0.020942408376963352, 0.020942408376963352, 0.020942408376963352, 0.020942408376963352, 0.020942408376963352, 0.020942408376963352, 0.020942408376963352, 0.9476439790575916, 0.02617801047120419, 0.028795811518324606, 0.02617801047120419, 0.9424083769633508, 0.1649214659685864, 0.14659685863874344, 0.06544502617801047, 0.049738219895287955, 0.0549738219895288, 0.041884816753926704, 0.034031413612565446, 0.020942408376963352, 0.01832460732984293, 0.01832460732984293, 0.020942408376963352, 0.015706806282722512, 0.015706806282722512, 0.015706806282722512, 0.015706806282722512, 0.015706806282722512, 0.015706806282722512, 0.041884816753926704, 0.04450261780104712, 0.06806282722513089, 0.020942408376963352, 0.015706806282722512, 0.015706806282722512, 0.015706806282722512, 0.015706806282722512, 0.015706806282722512, 0.015706806282722512, 0.015706806282722512, 0.015706806282722512, 0.015706806282722512, 0.01832460732984293, 0.01832460732984293, 0.034031413612565446, 0.02356020942408377, 0.020942408376963352, 0.01832460732984293, 0.01832460732984293, 0.01832460732984293, 0.01832460732984293, 0.01832460732984293, 0.015706806282722512, 0.015706806282722512, 0.015706806282722512, 0.015706806282722512, 0.01832460732984293, 0.02356020942408377, 0.01832460732984293, 0.01832460732984293, 0.01832460732984293, 0.01832460732984293, 0.01832460732984293, 0.031413612565445025, 0.031413612565445025, 0.041884816753926704, 0.06806282722513089, 0.08638743455497382, 0.14397905759162305, 0.14659685863874344, 0.14921465968586387, 0.1518324607329843, 0.1518324607329843, 0.15706806282722513, 0.15706806282722513, 0.16230366492146597, 0.16230366492146597, 0.16753926701570682, 0.16753926701570682, 0.17277486910994763, 0.18848167539267016, 0.2094240837696335, 0.2931937172774869, 0.5052356020942408], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/cwf18.gap.json b/pfam_gap_rates/cwf18.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..860d4021b577a22d2cc11f6557b5923239f1dcaf
--- /dev/null
+++ b/pfam_gap_rates/cwf18.gap.json
@@ -0,0 +1 @@
+{"family": "cwf18", "n_seqs": 294, "length": 179, "gap_rates": [0.5510204081632653, 0.30272108843537415, 0.2857142857142857, 0.2687074829931973, 0.2585034013605442, 0.24489795918367346, 0.23809523809523808, 0.22789115646258504, 0.22108843537414966, 0.22108843537414966, 0.22108843537414966, 0.22108843537414966, 0.21768707482993196, 0.21768707482993196, 0.21768707482993196, 0.21768707482993196, 0.2108843537414966, 0.21428571428571427, 0.21428571428571427, 0.21428571428571427, 0.20408163265306123, 0.20408163265306123, 0.20408163265306123, 0.3435374149659864, 0.5204081632653061, 0.7551020408163265, 0.7755102040816326, 0.8299319727891157, 0.8605442176870748, 0.8741496598639455, 0.8877551020408163, 0.9047619047619048, 0.935374149659864, 0.9455782312925171, 0.9421768707482994, 0.9115646258503401, 0.8945578231292517, 0.8741496598639455, 0.8707482993197279, 0.8469387755102041, 0.7959183673469388, 0.7585034013605442, 0.7482993197278912, 0.5170068027210885, 0.6020408163265306, 0.5952380952380952, 0.5612244897959183, 0.7074829931972789, 0.5034013605442177, 0.41156462585034015, 0.3673469387755102, 0.29931972789115646, 0.2653061224489796, 0.23469387755102042, 0.21428571428571427, 0.17346938775510204, 0.17346938775510204, 0.17346938775510204, 0.1836734693877551, 0.17687074829931973, 0.19047619047619047, 0.1870748299319728, 0.17006802721088435, 0.07482993197278912, 0.7721088435374149, 0.7891156462585034, 0.8503401360544217, 0.8775510204081632, 0.9013605442176871, 0.9285714285714286, 0.935374149659864, 0.9455782312925171, 0.9489795918367347, 0.9387755102040817, 0.9285714285714286, 0.9047619047619048, 0.891156462585034, 0.8639455782312925, 0.7891156462585034, 0.782312925170068, 0.7687074829931972, 0.05102040816326531, 0.04081632653061224, 0.04081632653061224, 0.03741496598639456, 0.03741496598639456, 0.03741496598639456, 0.03741496598639456, 0.03741496598639456, 0.03741496598639456, 0.03741496598639456, 0.04081632653061224, 0.08163265306122448, 0.06802721088435375, 0.03741496598639456, 0.023809523809523808, 0.030612244897959183, 0.023809523809523808, 0.023809523809523808, 0.023809523809523808, 0.023809523809523808, 0.027210884353741496, 0.030612244897959183, 0.05782312925170068, 0.6122448979591837, 0.8367346938775511, 0.7721088435374149, 0.5612244897959183, 0.034013605442176874, 0.013605442176870748, 0.01020408163265306, 0.01020408163265306, 0.01020408163265306, 0.013605442176870748, 0.01020408163265306, 0.01020408163265306, 0.013605442176870748, 0.017006802721088437, 0.017006802721088437, 0.013605442176870748, 0.013605442176870748, 0.017006802721088437, 0.023809523809523808, 0.034013605442176874, 0.19727891156462585, 0.20748299319727892, 0.2108843537414966, 0.21768707482993196, 0.5850340136054422, 0.7448979591836735, 0.9489795918367347, 0.9251700680272109, 0.7244897959183674, 0.5680272108843537, 0.4523809523809524, 0.07142857142857142, 0.04081632653061224, 0.027210884353741496, 0.047619047619047616, 0.027210884353741496, 0.017006802721088437, 0.017006802721088437, 0.02040816326530612, 0.017006802721088437, 0.017006802721088437, 0.017006802721088437, 0.013605442176870748, 0.013605442176870748, 0.013605442176870748, 0.013605442176870748, 0.013605442176870748, 0.013605442176870748, 0.013605442176870748, 0.013605442176870748, 0.013605442176870748, 0.013605442176870748, 0.013605442176870748, 0.013605442176870748, 0.013605442176870748, 0.013605442176870748, 0.013605442176870748, 0.013605442176870748, 0.013605442176870748, 0.013605442176870748, 0.013605442176870748, 0.02040816326530612, 0.02040816326530612, 0.02040816326530612, 0.023809523809523808, 0.027210884353741496, 0.027210884353741496, 0.030612244897959183, 0.034013605442176874, 0.034013605442176874, 0.04081632653061224, 0.1054421768707483, 0.13945578231292516, 0.24489795918367346, 0.2789115646258503], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/cwf21.gap.json b/pfam_gap_rates/cwf21.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f179703defd6c4852980836815339320b8a361b8
--- /dev/null
+++ b/pfam_gap_rates/cwf21.gap.json
@@ -0,0 +1 @@
+{"family": "cwf21", "n_seqs": 433, "length": 54, "gap_rates": [0.3441108545034642, 0.23556581986143188, 0.08775981524249422, 0.06697459584295612, 0.04157043879907621, 0.011547344110854504, 0.8221709006928406, 0.836027713625866, 0.7575057736720554, 0.011547344110854504, 0.011547344110854504, 0.009237875288683603, 0.009237875288683603, 0.006928406466512702, 0.006928406466512702, 0.004618937644341801, 0.004618937644341801, 0.004618937644341801, 0.004618937644341801, 0.004618937644341801, 0.004618937644341801, 0.004618937644341801, 0.004618937644341801, 0.004618937644341801, 0.004618937644341801, 0.8868360277136259, 0.9237875288683602, 0.8868360277136259, 0.004618937644341801, 0.06004618937644342, 0.9237875288683602, 0.9445727482678984, 0.9237875288683602, 0.04387990762124711, 0.7875288683602771, 0.016166281755196306, 0.016166281755196306, 0.013856812933025405, 0.013856812933025405, 0.016166281755196306, 0.018475750577367205, 0.023094688221709007, 0.02771362586605081, 0.03002309468822171, 0.03233256351039261, 0.03464203233256351, 0.03464203233256351, 0.03464203233256351, 0.03464203233256351, 0.07390300230946882, 0.09930715935334873, 0.13163972286374134, 0.28868360277136257, 0.5935334872979214], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/dNK.gap.json b/pfam_gap_rates/dNK.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c6314418cc78adf47df6151d8b80bed3dd54d7b5
--- /dev/null
+++ b/pfam_gap_rates/dNK.gap.json
@@ -0,0 +1 @@
+{"family": "dNK", "n_seqs": 1187, "length": 261, "gap_rates": [0.2493681550126369, 0.13479359730412804, 0.09267059814658804, 0.08845829823083404, 0.08677337826453244, 0.08677337826453244, 0.07919123841617523, 0.07497893850042123, 0.07245155855096883, 0.07076663858466722, 0.07076663858466722, 0.06992417860151642, 0.06908171861836562, 0.06908171861836562, 0.06739679865206402, 0.06739679865206402, 0.06739679865206402, 0.06739679865206402, 0.06739679865206402, 0.06739679865206402, 0.06908171861836562, 0.06739679865206402, 0.08508845829823083, 0.9292333614153327, 0.9418702611625948, 0.8466722830665543, 0.06908171861836562, 0.06486941870261162, 0.062342038753159225, 0.06402695871946082, 0.06486941870261162, 0.06908171861836562, 0.06908171861836562, 0.06655433866891322, 0.06739679865206402, 0.07076663858466722, 0.06739679865206402, 0.7346251053074979, 0.7085088458298231, 0.6933445661331087, 0.6899747262005055, 0.6756529064869419, 0.8163437236731256, 0.8727885425442291, 0.8812131423757371, 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\ No newline at end of file
diff --git a/pfam_gap_rates/eIF2A.gap.json b/pfam_gap_rates/eIF2A.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c921fe2d03637262c4bf953968707e30e4602335
--- /dev/null
+++ b/pfam_gap_rates/eIF2A.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/eIF_4G1.gap.json b/pfam_gap_rates/eIF_4G1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e46811e4867dfa1eb3239f371f69989fbe905f33
--- /dev/null
+++ b/pfam_gap_rates/eIF_4G1.gap.json
@@ -0,0 +1 @@
+{"family": "eIF_4G1", "n_seqs": 152, "length": 74, "gap_rates": [0.6381578947368421, 0.5131578947368421, 0.4605263157894737, 0.4144736842105263, 0.3881578947368421, 0.3618421052631579, 0.34868421052631576, 0.3157894736842105, 0.2894736842105263, 0.26973684210526316, 0.24342105263157895, 0.21052631578947367, 0.19736842105263158, 0.1513157894736842, 0.13815789473684212, 0.13157894736842105, 0.11842105263157894, 0.09868421052631579, 0.06578947368421052, 0.05263157894736842, 0.039473684210526314, 0.03289473684210526, 0.02631578947368421, 0.02631578947368421, 0.039473684210526314, 0.02631578947368421, 0.02631578947368421, 0.02631578947368421, 0.02631578947368421, 0.02631578947368421, 0.02631578947368421, 0.02631578947368421, 0.02631578947368421, 0.02631578947368421, 0.02631578947368421, 0.02631578947368421, 0.02631578947368421, 0.02631578947368421, 0.019736842105263157, 0.019736842105263157, 0.019736842105263157, 0.019736842105263157, 0.039473684210526314, 0.02631578947368421, 0.09210526315789473, 0.03289473684210526, 0.05263157894736842, 0.02631578947368421, 0.019736842105263157, 0.23026315789473684, 0.75, 0.9473684210526315, 0.6381578947368421, 0.21710526315789475, 0.019736842105263157, 0.013157894736842105, 0.006578947368421052, 0.006578947368421052, 0.006578947368421052, 0.006578947368421052, 0.006578947368421052, 0.006578947368421052, 0.006578947368421052, 0.006578947368421052, 0.006578947368421052, 0.006578947368421052, 0.006578947368421052, 0.02631578947368421, 0.02631578947368421, 0.039473684210526314, 0.06578947368421052, 0.06578947368421052, 0.07236842105263158, 0.34210526315789475], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/eRF1_1.gap.json b/pfam_gap_rates/eRF1_1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f83226f493dfdd88de4509b3b7d4151a46e6b57c
--- /dev/null
+++ b/pfam_gap_rates/eRF1_1.gap.json
@@ -0,0 +1 @@
+{"family": "eRF1_1", "n_seqs": 904, "length": 136, "gap_rates": [0.2853982300884956, 0.2002212389380531, 0.1913716814159292, 0.1836283185840708, 0.17588495575221239, 0.15265486725663716, 0.5243362831858407, 0.5154867256637168, 0.13495575221238937, 0.1261061946902655, 0.12389380530973451, 0.1338495575221239, 0.1084070796460177, 0.1161504424778761, 0.0752212389380531, 0.06858407079646017, 0.046460176991150445, 0.04424778761061947, 0.0420353982300885, 0.0420353982300885, 0.03871681415929203, 0.03650442477876106, 0.034292035398230086, 0.034292035398230086, 0.033185840707964605, 0.032079646017699116, 0.032079646017699116, 0.02654867256637168, 0.025442477876106196, 0.025442477876106196, 0.023230088495575223, 0.023230088495575223, 0.023230088495575223, 0.022123893805309734, 0.017699115044247787, 0.017699115044247787, 0.017699115044247787, 0.016592920353982302, 0.016592920353982302, 0.016592920353982302, 0.015486725663716814, 0.017699115044247787, 0.017699115044247787, 0.016592920353982302, 0.014380530973451327, 0.014380530973451327, 0.014380530973451327, 0.014380530973451327, 0.014380530973451327, 0.023230088495575223, 0.024336283185840708, 0.6017699115044248, 0.6150442477876106, 0.5873893805309734, 0.5630530973451328, 0.5497787610619469, 0.5464601769911505, 0.5486725663716814, 0.5453539823008849, 0.5376106194690266, 0.018805309734513276, 0.018805309734513276, 0.018805309734513276, 0.017699115044247787, 0.017699115044247787, 0.016592920353982302, 0.017699115044247787, 0.016592920353982302, 0.017699115044247787, 0.017699115044247787, 0.017699115044247787, 0.018805309734513276, 0.01991150442477876, 0.01991150442477876, 0.01991150442477876, 0.01991150442477876, 0.023230088495575223, 0.024336283185840708, 0.023230088495575223, 0.4834070796460177, 0.48672566371681414, 0.47676991150442477, 0.01991150442477876, 0.033185840707964605, 0.030973451327433628, 0.01991150442477876, 0.01991150442477876, 0.01991150442477876, 0.01991150442477876, 0.01991150442477876, 0.01991150442477876, 0.01991150442477876, 0.02101769911504425, 0.02101769911504425, 0.02101769911504425, 0.02101769911504425, 0.02101769911504425, 0.5641592920353983, 0.5608407079646017, 0.5353982300884956, 0.04314159292035398, 0.025442477876106196, 0.025442477876106196, 0.023230088495575223, 0.024336283185840708, 0.023230088495575223, 0.023230088495575223, 0.024336283185840708, 0.024336283185840708, 0.025442477876106196, 0.025442477876106196, 0.02765486725663717, 0.02765486725663717, 0.02765486725663717, 0.02765486725663717, 0.02765486725663717, 0.02765486725663717, 0.02765486725663717, 0.02765486725663717, 0.9413716814159292, 0.06637168141592921, 0.032079646017699116, 0.4435840707964602, 0.035398230088495575, 0.03650442477876106, 0.03761061946902655, 0.03761061946902655, 0.0420353982300885, 0.0420353982300885, 0.04314159292035398, 0.04756637168141593, 0.051991150442477874, 0.06747787610619468, 0.09292035398230089, 0.22566371681415928, 0.8484513274336283], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/ketoacyl-synt.gap.json b/pfam_gap_rates/ketoacyl-synt.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f2bee130746dae395ee1329c572bc768706044d1
--- /dev/null
+++ b/pfam_gap_rates/ketoacyl-synt.gap.json
@@ -0,0 +1 @@
+{"family": "ketoacyl-synt", "n_seqs": 5000, "length": 294, "gap_rates": [0.9072, 0.4152, 0.257, 0.2268, 0.202, 0.1922, 0.1898, 0.1882, 0.1746, 0.174, 0.1732, 0.1712, 0.1696, 0.1686, 0.1678, 0.1686, 0.1674, 0.1656, 0.7788, 0.1626, 0.1608, 0.1602, 0.16, 0.1594, 0.159, 0.1588, 0.1572, 0.1562, 0.1552, 0.1542, 0.1562, 0.154, 0.1528, 0.151, 0.1508, 0.1764, 0.1534, 0.1494, 0.4326, 0.541, 0.3434, 0.9106, 0.2712, 0.2394, 0.1754, 0.1662, 0.1668, 0.1744, 0.5502, 0.5756, 0.5012, 0.206, 0.1762, 0.1664, 0.1526, 0.144, 0.1402, 0.137, 0.1418, 0.1462, 0.1608, 0.5744, 0.557, 0.5244, 0.5188, 0.5148, 0.5082, 0.4918, 0.9108, 0.5524, 0.4554, 0.3062, 0.2328, 0.1408, 0.1326, 0.122, 0.1252, 0.132, 0.1306, 0.1358, 0.163, 0.121, 0.1244, 0.1218, 0.3214, 0.2916, 0.2724, 0.109, 0.1006, 0.0966, 0.0934, 0.0908, 0.0892, 0.0874, 0.0862, 0.0832, 0.082, 0.0816, 0.0792, 0.0778, 0.0766, 0.0772, 0.077, 0.077, 0.0778, 0.077, 0.0772, 0.076, 0.0798, 0.0786, 0.079, 0.1618, 0.1486, 0.1318, 0.9016, 0.9462, 0.9134, 0.8676, 0.0946, 0.102, 0.1194, 0.0766, 0.931, 0.945, 0.8778, 0.072, 0.071, 0.0702, 0.0696, 0.0696, 0.0706, 0.0704, 0.0708, 0.072, 0.0726, 0.788, 0.9192, 0.884, 0.7724, 0.0854, 0.0998, 0.6702, 0.7992, 0.9294, 0.9416, 0.9488, 0.9456, 0.9382, 0.916, 0.7496, 0.6298, 0.133, 0.2014, 0.2726, 0.2216, 0.1548, 0.1278, 0.1326, 0.214, 0.1758, 0.1822, 0.5652, 0.9006, 0.9454, 0.924, 0.8552, 0.3268, 0.1604, 0.1348, 0.1156, 0.1016, 0.1106, 0.9076, 0.4262, 0.1086, 0.095, 0.0906, 0.1102, 0.5076, 0.0788, 0.0724, 0.0696, 0.0666, 0.0634, 0.0622, 0.0614, 0.061, 0.0598, 0.0596, 0.0596, 0.0598, 0.0586, 0.0586, 0.0596, 0.0592, 0.0586, 0.0582, 0.0584, 0.059, 0.0592, 0.0596, 0.0596, 0.0594, 0.0594, 0.0592, 0.058, 0.0582, 0.0578, 0.8716, 0.0574, 0.0572, 0.0576, 0.0568, 0.0568, 0.057, 0.0568, 0.1852, 0.0574, 0.0574, 0.0566, 0.056, 0.056, 0.0554, 0.056, 0.0566, 0.0612, 0.056, 0.055, 0.055, 0.0548, 0.054, 0.054, 0.0544, 0.055, 0.189, 0.0626, 0.0612, 0.0612, 0.0618, 0.0636, 0.0654, 0.067, 0.0672, 0.0674, 0.068, 0.0668, 0.0672, 0.0678, 0.068, 0.7912, 0.068, 0.0688, 0.07, 0.0708, 0.0852, 0.854, 0.916, 0.6444, 0.1294, 0.0758, 0.9246, 0.9266, 0.9226, 0.0752, 0.0746, 0.074, 0.0742, 0.0758, 0.0798, 0.076, 0.0748, 0.6724, 0.6798, 0.6688, 0.0746, 0.0744, 0.0746, 0.075, 0.0752, 0.0754, 0.0756, 0.076, 0.0776, 0.0768, 0.0774, 0.0784, 0.0824, 0.0844, 0.0926, 0.1058, 0.126, 0.159, 0.2068, 0.267], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/potato_inhibit.gap.json b/pfam_gap_rates/potato_inhibit.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..fbea7eb2eb0c5d67fb05a2de1d37b445e34baa09
--- /dev/null
+++ b/pfam_gap_rates/potato_inhibit.gap.json
@@ -0,0 +1 @@
+{"family": "potato_inhibit", "n_seqs": 380, "length": 69, "gap_rates": [0.16052631578947368, 0.10789473684210527, 0.04736842105263158, 0.02894736842105263, 0.02631578947368421, 0.021052631578947368, 0.018421052631578946, 0.018421052631578946, 0.018421052631578946, 0.018421052631578946, 0.015789473684210527, 0.010526315789473684, 0.010526315789473684, 0.007894736842105263, 0.007894736842105263, 0.005263157894736842, 0.005263157894736842, 0.005263157894736842, 0.002631578947368421, 0.002631578947368421, 0.002631578947368421, 0.002631578947368421, 0.002631578947368421, 0.002631578947368421, 0.007894736842105263, 0.002631578947368421, 0.1763157894736842, 0.015789473684210527, 0.02368421052631579, 0.631578947368421, 0.010526315789473684, 0.018421052631578946, 0.021052631578947368, 0.021052631578947368, 0.021052631578947368, 0.02894736842105263, 0.9289473684210526, 0.04473684210526316, 0.031578947368421054, 0.02894736842105263, 0.031578947368421054, 0.031578947368421054, 0.031578947368421054, 0.034210526315789476, 0.03684210526315789, 0.042105263157894736, 0.042105263157894736, 0.042105263157894736, 0.04473684210526316, 0.04473684210526316, 0.04736842105263158, 0.04736842105263158, 0.9447368421052632, 0.04736842105263158, 0.9131578947368421, 0.9236842105263158, 0.8921052631578947, 0.07631578947368421, 0.2578947368421053, 0.25, 0.2394736842105263, 0.060526315789473685, 0.06315789473684211, 0.06578947368421052, 0.06842105263157895, 0.07894736842105263, 0.11842105263157894, 0.12631578947368421, 0.19473684210526315], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/rhaM.gap.json b/pfam_gap_rates/rhaM.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c9c41980669d1b716e5d14b2ccd0be0a8c4d66a8
--- /dev/null
+++ b/pfam_gap_rates/rhaM.gap.json
@@ -0,0 +1 @@
+{"family": "rhaM", "n_seqs": 588, "length": 121, "gap_rates": [0.26360544217687076, 0.141156462585034, 0.08843537414965986, 0.07312925170068027, 0.05952380952380952, 0.04251700680272109, 0.04081632653061224, 0.0391156462585034, 0.02891156462585034, 0.8078231292517006, 0.8027210884353742, 0.02040816326530612, 0.01870748299319728, 0.01870748299319728, 0.01870748299319728, 0.017006802721088437, 0.017006802721088437, 0.017006802721088437, 0.017006802721088437, 0.017006802721088437, 0.017006802721088437, 0.017006802721088437, 0.9081632653061225, 0.9064625850340136, 0.017006802721088437, 0.017006802721088437, 0.015306122448979591, 0.015306122448979591, 0.015306122448979591, 0.015306122448979591, 0.013605442176870748, 0.013605442176870748, 0.013605442176870748, 0.015306122448979591, 0.015306122448979591, 0.015306122448979591, 0.015306122448979591, 0.015306122448979591, 0.013605442176870748, 0.013605442176870748, 0.011904761904761904, 0.01020408163265306, 0.01020408163265306, 0.008503401360544218, 0.008503401360544218, 0.008503401360544218, 0.4064625850340136, 0.5187074829931972, 0.03741496598639456, 0.01020408163265306, 0.008503401360544218, 0.006802721088435374, 0.006802721088435374, 0.00510204081632653, 0.00510204081632653, 0.00510204081632653, 0.006802721088435374, 0.00510204081632653, 0.00510204081632653, 0.00510204081632653, 0.9404761904761905, 0.6496598639455783, 0.3843537414965986, 0.20408163265306123, 0.02040816326530612, 0.013605442176870748, 0.017006802721088437, 0.8622448979591837, 0.858843537414966, 0.02040816326530612, 0.022108843537414966, 0.022108843537414966, 0.022108843537414966, 0.02040816326530612, 0.02040816326530612, 0.023809523809523808, 0.22108843537414966, 0.02040816326530612, 0.02040816326530612, 0.02040816326530612, 0.02040816326530612, 0.02040816326530612, 0.02040816326530612, 0.022108843537414966, 0.022108843537414966, 0.022108843537414966, 0.022108843537414966, 0.022108843537414966, 0.022108843537414966, 0.023809523809523808, 0.023809523809523808, 0.025510204081632654, 0.025510204081632654, 0.8775510204081632, 0.935374149659864, 0.9438775510204082, 0.9115646258503401, 0.8639455782312925, 0.04251700680272109, 0.06802721088435375, 0.08163265306122448, 0.08843537414965986, 0.17857142857142858, 0.1598639455782313, 0.17346938775510204, 0.18537414965986396, 0.5629251700680272, 0.5476190476190477, 0.6326530612244898, 0.413265306122449, 0.40816326530612246, 0.3554421768707483, 0.3333333333333333, 0.2108843537414966, 0.11224489795918367, 0.11394557823129252, 0.11394557823129252, 0.11734693877551021, 0.12414965986394558, 0.17346938775510204, 0.3826530612244898], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/s48_45.gap.json b/pfam_gap_rates/s48_45.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..1d90427555bbb8030509a84406478b614e105830
--- /dev/null
+++ b/pfam_gap_rates/s48_45.gap.json
@@ -0,0 +1 @@
+{"family": "s48_45", "n_seqs": 176, "length": 182, "gap_rates": [0.45454545454545453, 0.2727272727272727, 0.16477272727272727, 0.14772727272727273, 0.14204545454545456, 0.14204545454545456, 0.14204545454545456, 0.6761363636363636, 0.7840909090909091, 0.8125, 0.8579545454545454, 0.8693181818181818, 0.8863636363636364, 0.9261363636363636, 0.9431818181818182, 0.9431818181818182, 0.9431818181818182, 0.9431818181818182, 0.9431818181818182, 0.9375, 0.9147727272727273, 0.8806818181818182, 0.8579545454545454, 0.8181818181818182, 0.7897727272727273, 0.7215909090909091, 0.5625, 0.3522727272727273, 0.30113636363636365, 0.26136363636363635, 0.20454545454545456, 0.19886363636363635, 0.1590909090909091, 0.14772727272727273, 0.13636363636363635, 0.13636363636363635, 0.125, 0.13068181818181818, 0.13636363636363635, 0.13068181818181818, 0.5852272727272727, 0.11931818181818182, 0.08522727272727272, 0.9261363636363636, 0.05113636363636364, 0.05113636363636364, 0.03409090909090909, 0.011363636363636364, 0.011363636363636364, 0.011363636363636364, 0.011363636363636364, 0.011363636363636364, 0.011363636363636364, 0.005681818181818182, 0.03409090909090909, 0.9318181818181818, 0.9375, 0.7784090909090909, 0.005681818181818182, 0.005681818181818182, 0.005681818181818182, 0.005681818181818182, 0.005681818181818182, 0.005681818181818182, 0.0, 0.0, 0.005681818181818182, 0.005681818181818182, 0.6477272727272727, 0.75, 0.7670454545454546, 0.8522727272727273, 0.9204545454545454, 0.9204545454545454, 0.9261363636363636, 0.9375, 0.9375, 0.9375, 0.9431818181818182, 0.9431818181818182, 0.9375, 0.9375, 0.9318181818181818, 0.9204545454545454, 0.9204545454545454, 0.8806818181818182, 0.8181818181818182, 0.75, 0.7159090909090909, 0.6477272727272727, 0.26136363636363635, 0.13636363636363635, 0.005681818181818182, 0.005681818181818182, 0.03409090909090909, 0.005681818181818182, 0.03977272727272727, 0.005681818181818182, 0.005681818181818182, 0.005681818181818182, 0.005681818181818182, 0.005681818181818182, 0.005681818181818182, 0.005681818181818182, 0.6704545454545454, 0.8352272727272727, 0.9147727272727273, 0.9261363636363636, 0.9375, 0.9488636363636364, 0.9375, 0.9375, 0.9261363636363636, 0.8409090909090909, 0.6761363636363636, 0.6022727272727273, 0.5454545454545454, 0.3806818181818182, 0.056818181818181816, 0.05113636363636364, 0.03977272727272727, 0.017045454545454544, 0.017045454545454544, 0.017045454545454544, 0.017045454545454544, 0.017045454545454544, 0.011363636363636364, 0.022727272727272728, 0.017045454545454544, 0.017045454545454544, 0.017045454545454544, 0.7613636363636364, 0.8011363636363636, 0.8409090909090909, 0.8977272727272727, 0.9318181818181818, 0.9318181818181818, 0.8863636363636364, 0.8125, 0.8011363636363636, 0.625, 0.4147727272727273, 0.24431818181818182, 0.17613636363636365, 0.125, 0.06818181818181818, 0.03977272727272727, 0.022727272727272728, 0.011363636363636364, 0.03409090909090909, 0.005681818181818182, 0.005681818181818182, 0.005681818181818182, 0.005681818181818182, 0.011363636363636364, 0.005681818181818182, 0.005681818181818182, 0.011363636363636364, 0.005681818181818182, 0.005681818181818182, 0.005681818181818182, 0.028409090909090908, 0.03409090909090909, 0.09659090909090909, 0.8806818181818182, 0.06818181818181818, 0.03977272727272727, 0.03409090909090909, 0.05113636363636364, 0.045454545454545456, 0.017045454545454544, 0.9375, 0.9375, 0.9375, 0.9318181818181818, 0.017045454545454544, 0.017045454545454544, 0.022727272727272728, 0.028409090909090908, 0.07954545454545454, 0.1590909090909091, 0.7727272727272727], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/tRNA_SAD.gap.json b/pfam_gap_rates/tRNA_SAD.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..6354b5af31c8158431c83d79914b1a9e5683ebc0
--- /dev/null
+++ b/pfam_gap_rates/tRNA_SAD.gap.json
@@ -0,0 +1 @@
+{"family": "tRNA_SAD", "n_seqs": 5000, "length": 68, "gap_rates": [0.2416, 0.109, 0.0814, 0.0716, 0.0626, 0.0476, 0.0374, 0.0624, 0.829, 0.8462, 0.89, 0.9076, 0.9176, 0.9278, 0.9424, 0.9438, 0.9344, 0.9244, 0.9138, 0.8982, 0.8696, 0.8364, 0.7744, 0.383, 0.0072, 0.0056, 0.0054, 0.003, 0.002, 0.002, 0.0018, 0.0014, 0.001, 0.0008, 0.0004, 0.0004, 0.0006, 0.0008, 0.0008, 0.0012, 0.9454, 0.904, 0.0018, 0.0034, 0.004, 0.0048, 0.0056, 0.0084, 0.577, 0.583, 0.5868, 0.5874, 0.5856, 0.5784, 0.575, 0.0184, 0.0242, 0.026, 0.0312, 0.0558, 0.0398, 0.0442, 0.0502, 0.0556, 0.061, 0.0742, 0.0862, 0.224], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/tRNA_int_endo.gap.json b/pfam_gap_rates/tRNA_int_endo.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..82e005142a6a0e3286db0c8b892abffa8b0d4fd3
--- /dev/null
+++ b/pfam_gap_rates/tRNA_int_endo.gap.json
@@ -0,0 +1 @@
+{"family": "tRNA_int_endo", "n_seqs": 676, "length": 106, "gap_rates": [0.5340236686390533, 0.4452662721893491, 0.2958579881656805, 0.17159763313609466, 0.09911242603550297, 0.07396449704142012, 0.0621301775147929, 0.05325443786982249, 0.04881656804733728, 0.04585798816568047, 0.03254437869822485, 0.029585798816568046, 0.026627218934911243, 0.019230769230769232, 0.022189349112426034, 0.016272189349112426, 0.011834319526627219, 0.011834319526627219, 0.011834319526627219, 0.0073964497041420114, 0.0073964497041420114, 0.03106508875739645, 0.028106508875739646, 0.04142011834319527, 0.008875739644970414, 0.005917159763313609, 0.005917159763313609, 0.005917159763313609, 0.005917159763313609, 0.0073964497041420114, 0.010355029585798817, 0.9112426035502958, 0.8772189349112426, 0.06360946745562131, 0.05621301775147929, 0.02514792899408284, 0.026627218934911243, 0.020710059171597635, 0.014792899408284023, 0.014792899408284023, 0.014792899408284023, 0.014792899408284023, 0.016272189349112426, 0.01775147928994083, 0.019230769230769232, 0.020710059171597635, 0.023668639053254437, 0.022189349112426034, 0.9423076923076923, 0.10355029585798817, 0.09171597633136094, 0.07692307692307693, 0.051775147928994084, 0.042899408284023666, 0.04881656804733728, 0.042899408284023666, 0.6701183431952663, 0.6863905325443787, 0.7144970414201184, 0.757396449704142, 0.8165680473372781, 0.8431952662721893, 0.886094674556213, 0.9023668639053254, 0.9408284023668639, 0.9319526627218935, 0.8994082840236687, 0.8831360946745562, 0.8269230769230769, 0.8091715976331361, 0.7411242603550295, 0.6982248520710059, 0.6804733727810651, 0.6627218934911243, 0.04881656804733728, 0.042899408284023666, 0.034023668639053255, 0.034023668639053255, 0.03550295857988166, 0.034023668639053255, 0.034023668639053255, 0.034023668639053255, 0.03550295857988166, 0.03550295857988166, 0.03698224852071006, 0.03698224852071006, 0.03698224852071006, 0.03698224852071006, 0.03994082840236687, 0.042899408284023666, 0.042899408284023666, 0.05325443786982249, 0.057692307692307696, 0.057692307692307696, 0.060650887573964495, 0.08136094674556213, 0.11242603550295859, 0.14940828402366865, 0.3343195266272189, 0.4556213017751479, 0.5384615384615384, 0.6168639053254438, 0.7011834319526628, 0.764792899408284, 0.7958579881656804, 0.8284023668639053], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/tRNA_int_endo_N.gap.json b/pfam_gap_rates/tRNA_int_endo_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..0c5506084d3a597a6158009c3f4ed30faaa28c39
--- /dev/null
+++ b/pfam_gap_rates/tRNA_int_endo_N.gap.json
@@ -0,0 +1 @@
+{"family": "tRNA_int_endo_N", "n_seqs": 205, "length": 94, "gap_rates": [0.824390243902439, 0.5658536585365853, 0.40487804878048783, 0.36585365853658536, 0.3463414634146341, 0.32682926829268294, 0.3024390243902439, 0.3024390243902439, 0.3024390243902439, 0.28292682926829266, 0.2634146341463415, 0.24390243902439024, 0.24878048780487805, 0.36585365853658536, 0.4682926829268293, 0.23902439024390243, 0.2048780487804878, 0.17073170731707318, 0.14634146341463414, 0.13658536585365855, 0.15121951219512195, 0.1024390243902439, 0.11219512195121951, 0.1024390243902439, 0.11219512195121951, 0.11707317073170732, 0.08780487804878048, 0.17560975609756097, 0.17073170731707318, 0.424390243902439, 0.5560975609756098, 0.5658536585365853, 0.8048780487804879, 0.8195121951219512, 0.8780487804878049, 0.9170731707317074, 0.9317073170731708, 0.9463414634146341, 0.9463414634146341, 0.9463414634146341, 0.9463414634146341, 0.9463414634146341, 0.9463414634146341, 0.9463414634146341, 0.9463414634146341, 0.9463414634146341, 0.9414634146341463, 0.9317073170731708, 0.9170731707317074, 0.8195121951219512, 0.8146341463414634, 0.5707317073170731, 0.5609756097560976, 0.5463414634146342, 0.07317073170731707, 0.03414634146341464, 0.01951219512195122, 0.014634146341463415, 0.014634146341463415, 0.014634146341463415, 0.00975609756097561, 0.00975609756097561, 0.00975609756097561, 0.00975609756097561, 0.00975609756097561, 0.00975609756097561, 0.00975609756097561, 0.00975609756097561, 0.00975609756097561, 0.00975609756097561, 0.00975609756097561, 0.00975609756097561, 0.00975609756097561, 0.5707317073170731, 0.00975609756097561, 0.00975609756097561, 0.00975609756097561, 0.00975609756097561, 0.014634146341463415, 0.024390243902439025, 0.8780487804878049, 0.5024390243902439, 0.15121951219512195, 0.16097560975609757, 0.17560975609756097, 0.16585365853658537, 0.1902439024390244, 0.1951219512195122, 0.2, 0.22926829268292684, 0.25365853658536586, 0.28292682926829266, 0.3073170731707317, 0.5170731707317073], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/ubiquitin.gap.json b/pfam_gap_rates/ubiquitin.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..5b0204ab434d91bd0a75d1fe08303c12fa551af6
--- /dev/null
+++ b/pfam_gap_rates/ubiquitin.gap.json
@@ -0,0 +1 @@
+{"family": "ubiquitin", "n_seqs": 5000, "length": 76, "gap_rates": [0.3726, 0.2992, 0.2608, 0.2504, 0.269, 0.9444, 0.2126, 0.175, 0.1322, 0.1126, 0.0988, 0.082, 0.0708, 0.0638, 0.0584, 0.053, 0.0498, 0.044, 0.041, 0.0366, 0.0284, 0.024, 0.023, 0.02, 0.0178, 0.0174, 0.0164, 0.0164, 0.0154, 0.0144, 0.019, 0.0182, 0.017, 0.0254, 0.9446, 0.932, 0.0256, 0.0238, 0.0188, 0.0154, 0.0168, 0.0154, 0.012, 0.0124, 0.0136, 0.0138, 0.016, 0.0158, 0.0172, 0.0204, 0.0268, 0.906, 0.0204, 0.0226, 0.0238, 0.0282, 0.0298, 0.03, 0.0318, 0.0344, 0.038, 0.0486, 0.0492, 0.0598, 0.056, 0.062, 0.0702, 0.0742, 0.0764, 0.0866, 0.0974, 0.1624, 0.2296, 0.285, 0.4036, 0.5808], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/zf-C2HC.gap.json b/pfam_gap_rates/zf-C2HC.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..41a8ae9c3396387e70d906845d463eef19d5b8e8
--- /dev/null
+++ b/pfam_gap_rates/zf-C2HC.gap.json
@@ -0,0 +1 @@
+{"family": "zf-C2HC", "n_seqs": 645, "length": 30, "gap_rates": [0.17054263565891473, 0.0031007751937984496, 0.0031007751937984496, 0.0031007751937984496, 0.0015503875968992248, 0.0015503875968992248, 0.0015503875968992248, 0.0015503875968992248, 0.0015503875968992248, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0015503875968992248, 0.9286821705426357, 0.0015503875968992248, 0.0015503875968992248, 0.0015503875968992248, 0.0015503875968992248, 0.0015503875968992248, 0.0015503875968992248, 0.012403100775193798, 0.021705426356589147, 0.024806201550387597, 0.02945736434108527, 0.02945736434108527, 0.03255813953488372, 0.12868217054263567, 0.21705426356589147], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/zf-C3HC4_4.gap.json b/pfam_gap_rates/zf-C3HC4_4.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..32c409927cc6c920baf87cc8ac4f4952b69fba4e
--- /dev/null
+++ b/pfam_gap_rates/zf-C3HC4_4.gap.json
@@ -0,0 +1 @@
+{"family": "zf-C3HC4_4", "n_seqs": 782, "length": 45, "gap_rates": [0.016624040920716114, 0.015345268542199489, 0.011508951406649617, 0.011508951406649617, 0.011508951406649617, 0.010230179028132993, 0.011508951406649617, 0.010230179028132993, 0.005115089514066497, 0.0025575447570332483, 0.0012787723785166241, 0.0012787723785166241, 0.0012787723785166241, 0.0, 0.0, 0.0, 0.0, 0.0012787723785166241, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0012787723785166241, 0.0012787723785166241, 0.0012787723785166241, 0.0012787723785166241, 0.008951406649616368, 0.015345268542199489, 0.017902813299232736, 0.024296675191815855, 0.026854219948849106, 0.0741687979539642, 0.07544757033248081, 0.16240409207161124, 0.48721227621483376, 0.8465473145780051, 0.9053708439897699, 0.6815856777493606, 0.16624040920716113, 0.09207161125319693, 0.0792838874680307, 0.08056265984654731, 0.08695652173913043, 0.08951406649616368], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/zf-C3HC4_5.gap.json b/pfam_gap_rates/zf-C3HC4_5.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..21339fe9ec777ac134c5578fb067d3106221f232
--- /dev/null
+++ b/pfam_gap_rates/zf-C3HC4_5.gap.json
@@ -0,0 +1 @@
+{"family": "zf-C3HC4_5", "n_seqs": 199, "length": 51, "gap_rates": [0.47738693467336685, 0.21105527638190955, 0.09547738693467336, 0.010050251256281407, 0.010050251256281407, 0.010050251256281407, 0.010050251256281407, 0.010050251256281407, 0.010050251256281407, 0.010050251256281407, 0.010050251256281407, 0.010050251256281407, 0.010050251256281407, 0.010050251256281407, 0.010050251256281407, 0.010050251256281407, 0.010050251256281407, 0.010050251256281407, 0.010050251256281407, 0.01507537688442211, 0.010050251256281407, 0.11557788944723618, 0.1407035175879397, 0.32160804020100503, 0.010050251256281407, 0.005025125628140704, 0.005025125628140704, 0.005025125628140704, 0.005025125628140704, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.01507537688442211, 0.005025125628140704, 0.005025125628140704, 0.005025125628140704, 0.005025125628140704, 0.005025125628140704, 0.020100502512562814, 0.07537688442211055, 0.17587939698492464, 0.39195979899497485, 0.5728643216080402, 0.7236180904522613], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/zf-C4_Topoisom.gap.json b/pfam_gap_rates/zf-C4_Topoisom.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..484a38b19fe965d603ab06237622276d04c78b00
--- /dev/null
+++ b/pfam_gap_rates/zf-C4_Topoisom.gap.json
@@ -0,0 +1 @@
+{"family": "zf-C4_Topoisom", "n_seqs": 4611, "length": 41, "gap_rates": [0.8536109303838647, 0.29906744740837127, 0.07286922576447626, 0.017132942962481024, 0.015181088700932552, 0.013229234439384082, 0.011711125569290826, 0.008024289741921492, 0.74886141834743, 0.004337453914552158, 0.003903708523096942, 0.0032530904359141183, 0.008458035133376708, 0.009108653220559532, 0.009976144003469963, 0.013879852526566904, 0.01865105183257428, 0.024940360008674906, 0.03253090435914118, 0.04445890262415962, 0.9327694643244415, 0.6605942311862937, 0.05204944697462589, 0.0605074821080026, 0.06224246367382347, 0.06267620906527868, 0.05985686402081978, 0.07135111689438299, 0.07720667967902842, 0.13662979830839297, 0.21210149642160053, 0.14920841466059423, 0.11993060073736717, 0.12405118195619172, 0.13250921708956842, 0.14335285187594882, 0.16026892214270225, 0.19865538928648882, 0.2828019952288007, 0.44654088050314467, 0.6308826718716114], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/zf-C4pol.gap.json b/pfam_gap_rates/zf-C4pol.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b129461897af37c2e44ac066f656e9d59eae64f1
--- /dev/null
+++ b/pfam_gap_rates/zf-C4pol.gap.json
@@ -0,0 +1 @@
+{"family": "zf-C4pol", "n_seqs": 532, "length": 86, "gap_rates": [0.039473684210526314, 0.03759398496240601, 0.03571428571428571, 0.03383458646616541, 0.03383458646616541, 0.7387218045112782, 0.793233082706767, 0.8872180451127819, 0.8214285714285714, 0.7518796992481203, 0.7349624060150376, 0.03383458646616541, 0.16729323308270677, 0.14661654135338345, 0.03007518796992481, 0.4266917293233083, 0.7631578947368421, 0.8890977443609023, 0.9342105263157895, 0.8477443609022557, 0.631578947368421, 0.35150375939849626, 0.016917293233082706, 0.011278195488721804, 0.011278195488721804, 0.011278195488721804, 0.015037593984962405, 0.015037593984962405, 0.011278195488721804, 0.011278195488721804, 0.04887218045112782, 0.013157894736842105, 0.013157894736842105, 0.015037593984962405, 0.020676691729323307, 0.013157894736842105, 0.9078947368421053, 0.009398496240601503, 0.009398496240601503, 0.009398496240601503, 0.009398496240601503, 0.009398496240601503, 0.009398496240601503, 0.005639097744360902, 0.0037593984962406013, 0.0018796992481203006, 0.0018796992481203006, 0.0018796992481203006, 0.0018796992481203006, 0.0018796992481203006, 0.0018796992481203006, 0.0018796992481203006, 0.0018796992481203006, 0.0018796992481203006, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.6372180451127819, 0.05075187969924812, 0.009398496240601503, 0.009398496240601503, 0.03195488721804511, 0.9417293233082706, 0.9323308270676691, 0.041353383458646614, 0.022556390977443608, 0.009398496240601503, 0.005639097744360902, 0.007518796992481203, 0.007518796992481203, 0.007518796992481203, 0.009398496240601503, 0.011278195488721804, 0.011278195488721804, 0.011278195488721804, 0.011278195488721804, 0.011278195488721804, 0.016917293233082706, 0.022556390977443608, 0.03195488721804511, 0.09210526315789473], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/zf-CCCH.gap.json b/pfam_gap_rates/zf-CCCH.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d0cd58de6be00ee8483a417f48cf7ee3a22007e6
--- /dev/null
+++ b/pfam_gap_rates/zf-CCCH.gap.json
@@ -0,0 +1 @@
+{"family": "zf-CCCH", "n_seqs": 5000, "length": 27, "gap_rates": [0.7082, 0.4416, 0.2924, 0.1484, 0.0328, 0.0102, 0.0086, 0.0302, 0.0042, 0.0026, 0.0014, 0.3594, 0.0002, 0.0, 0.0, 0.0, 0.0, 0.0084, 0.0, 0.0002, 0.0006, 0.0022, 0.0096, 0.012, 0.0142, 0.1788, 0.6882], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/zf-CDGSH.gap.json b/pfam_gap_rates/zf-CDGSH.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..58c23cdcf173929eacd89f53c74025e58d66c8ef
--- /dev/null
+++ b/pfam_gap_rates/zf-CDGSH.gap.json
@@ -0,0 +1 @@
+{"family": "zf-CDGSH", "n_seqs": 1079, "length": 55, "gap_rates": [0.7636700648748842, 0.6830398517145505, 0.6728452270620945, 0.6570898980537535, 0.6496756255792401, 0.6413345690454124, 0.6524559777571826, 0.6394810009267841, 0.633920296570899, 0.629286376274328, 0.6218721037998146, 0.6126042632066728, 0.629286376274328, 0.9471733086190918, 0.6153846153846154, 0.6144578313253012, 0.5922150139017609, 0.5681186283595923, 0.541241890639481, 0.5060240963855421, 0.46709916589434664, 0.3948100092678406, 0.35588507877664505, 0.27247451343836887, 0.3169601482854495, 0.28637627432808155, 0.4402224281742354, 0.43002780352177944, 0.3957367933271548, 0.8063021316033364, 0.865616311399444, 0.93790546802595, 0.8943466172381835, 0.8174235403151066, 0.7275254865616312, 0.004633920296570899, 0.0027803521779425394, 0.0009267840593141798, 0.0009267840593141798, 0.0009267840593141798, 0.0, 0.0, 0.0, 0.0, 0.0009267840593141798, 0.0009267840593141798, 0.0009267840593141798, 0.0009267840593141798, 0.0009267840593141798, 0.0009267840593141798, 0.0018535681186283596, 0.0027803521779425394, 0.011121408711770158, 0.021316033364226137, 0.45134383688600554], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/zf-CGNR.gap.json b/pfam_gap_rates/zf-CGNR.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..5632e71e0ded6073713b073963c0206282ba1aac
--- /dev/null
+++ b/pfam_gap_rates/zf-CGNR.gap.json
@@ -0,0 +1 @@
+{"family": "zf-CGNR", "n_seqs": 599, "length": 44, "gap_rates": [0.2270450751252087, 0.041736227045075125, 0.018363939899833055, 0.005008347245409015, 0.00333889816360601, 0.05175292153589316, 0.05342237061769616, 0.005008347245409015, 0.00333889816360601, 0.00333889816360601, 0.00333889816360601, 0.00333889816360601, 0.00333889816360601, 0.001669449081803005, 0.0, 0.0, 0.001669449081803005, 0.12186978297161936, 0.12186978297161936, 0.018363939899833055, 0.0, 0.0, 0.0, 0.0, 0.001669449081803005, 0.001669449081803005, 0.001669449081803005, 0.005008347245409015, 0.005008347245409015, 0.3823038397328882, 0.00333889816360601, 0.005008347245409015, 0.005008347245409015, 0.00667779632721202, 0.00667779632721202, 0.008347245409015025, 0.008347245409015025, 0.01001669449081803, 0.011686143572621035, 0.011686143572621035, 0.01335559265442404, 0.021702838063439065, 0.08013355592654424, 0.28213689482470783], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/zf-CXXC.gap.json b/pfam_gap_rates/zf-CXXC.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..dc1d4d70d34a4cf5496fa2d188c36114a7af95d9
--- /dev/null
+++ b/pfam_gap_rates/zf-CXXC.gap.json
@@ -0,0 +1 @@
+{"family": "zf-CXXC", "n_seqs": 433, "length": 47, "gap_rates": [0.792147806004619, 0.279445727482679, 0.16397228637413394, 0.10161662817551963, 0.06928406466512702, 0.04849884526558892, 0.03926096997690531, 0.03464203233256351, 0.03464203233256351, 0.03002309468822171, 0.02771362586605081, 0.025404157043879907, 0.020785219399538105, 0.020785219399538105, 0.020785219399538105, 0.018475750577367205, 0.013856812933025405, 0.0, 0.49884526558891457, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0023094688221709007, 0.0023094688221709007, 0.0023094688221709007, 0.006928406466512702, 0.21709006928406466, 0.20323325635103925, 0.19168591224018475, 0.16859122401847576, 0.16628175519630484, 0.16166281755196305, 0.050808314087759814, 0.006928406466512702, 0.016166281755196306, 0.018475750577367205, 0.013856812933025405, 0.013856812933025405, 0.03233256351039261, 0.046189376443418015, 0.06466512702078522, 0.06928406466512702], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/zf-DNA_Pol.gap.json b/pfam_gap_rates/zf-DNA_Pol.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..523b9682cf9b38cc4d7755587aa4e467d7012ad6
--- /dev/null
+++ b/pfam_gap_rates/zf-DNA_Pol.gap.json
@@ -0,0 +1 @@
+{"family": "zf-DNA_Pol", "n_seqs": 285, "length": 234, "gap_rates": [0.6070175438596491, 0.47017543859649125, 0.3333333333333333, 0.2596491228070175, 0.22456140350877193, 0.1824561403508772, 0.16842105263157894, 0.15087719298245614, 0.1368421052631579, 0.12982456140350876, 0.10175438596491228, 0.09824561403508772, 0.09473684210526316, 0.0912280701754386, 0.0912280701754386, 0.0912280701754386, 0.0912280701754386, 0.0912280701754386, 0.0912280701754386, 0.1368421052631579, 0.09473684210526316, 0.8912280701754386, 0.8842105263157894, 0.10175438596491228, 0.09473684210526316, 0.0912280701754386, 0.08771929824561403, 0.08771929824561403, 0.08771929824561403, 0.08771929824561403, 0.08771929824561403, 0.08421052631578947, 0.08771929824561403, 0.08771929824561403, 0.08771929824561403, 0.08771929824561403, 0.0912280701754386, 0.775438596491228, 0.8, 0.8315789473684211, 0.8421052631578947, 0.8631578947368421, 0.9017543859649123, 0.9192982456140351, 0.9052631578947369, 0.8947368421052632, 0.856140350877193, 0.8350877192982457, 0.8175438596491228, 0.7929824561403509, 0.7649122807017544, 0.6947368421052632, 0.35789473684210527, 0.1543859649122807, 0.14035087719298245, 0.12280701754385964, 0.09824561403508772, 0.09473684210526316, 0.08421052631578947, 0.08421052631578947, 0.08421052631578947, 0.07719298245614035, 0.07719298245614035, 0.08771929824561403, 0.6, 0.6175438596491228, 0.14035087719298245, 0.08070175438596491, 0.08070175438596491, 0.08070175438596491, 0.07719298245614035, 0.07017543859649122, 0.7684210526315789, 0.8280701754385965, 0.8526315789473684, 0.8280701754385965, 0.7508771929824561, 0.07017543859649122, 0.07017543859649122, 0.06315789473684211, 0.056140350877192984, 0.056140350877192984, 0.8701754385964913, 0.8491228070175438, 0.06315789473684211, 0.06315789473684211, 0.05964912280701754, 0.05964912280701754, 0.05964912280701754, 0.05964912280701754, 0.05964912280701754, 0.05964912280701754, 0.056140350877192984, 0.056140350877192984, 0.056140350877192984, 0.056140350877192984, 0.056140350877192984, 0.056140350877192984, 0.056140350877192984, 0.056140350877192984, 0.05964912280701754, 0.05964912280701754, 0.05964912280701754, 0.06666666666666667, 0.06315789473684211, 0.06315789473684211, 0.07368421052631578, 0.07368421052631578, 0.09473684210526316, 0.09473684210526316, 0.07017543859649122, 0.07017543859649122, 0.07017543859649122, 0.07017543859649122, 0.07368421052631578, 0.07368421052631578, 0.8947368421052632, 0.8912280701754386, 0.08070175438596491, 0.08070175438596491, 0.08771929824561403, 0.08421052631578947, 0.08421052631578947, 0.08771929824561403, 0.08771929824561403, 0.07719298245614035, 0.6140350877192983, 0.6666666666666666, 0.8526315789473684, 0.6491228070175439, 0.6035087719298246, 0.08070175438596491, 0.08771929824561403, 0.07719298245614035, 0.5508771929824562, 0.6771929824561403, 0.6877192982456141, 0.6842105263157895, 0.656140350877193, 0.36140350877192984, 0.29473684210526313, 0.07368421052631578, 0.7508771929824561, 0.07368421052631578, 0.07368421052631578, 0.07017543859649122, 0.07017543859649122, 0.07017543859649122, 0.06315789473684211, 0.06315789473684211, 0.05964912280701754, 0.05964912280701754, 0.06315789473684211, 0.07719298245614035, 0.07017543859649122, 0.07017543859649122, 0.07017543859649122, 0.07017543859649122, 0.06666666666666667, 0.07017543859649122, 0.07017543859649122, 0.07017543859649122, 0.07017543859649122, 0.07368421052631578, 0.07719298245614035, 0.08421052631578947, 0.08771929824561403, 0.08771929824561403, 0.08771929824561403, 0.08771929824561403, 0.08421052631578947, 0.08771929824561403, 0.09473684210526316, 0.09473684210526316, 0.09824561403508772, 0.10175438596491228, 0.12631578947368421, 0.15087719298245614, 0.16842105263157894, 0.18947368421052632, 0.6771929824561403, 0.7614035087719299, 0.8105263157894737, 0.8456140350877193, 0.8771929824561403, 0.9228070175438596, 0.9052631578947369, 0.8701754385964913, 0.8456140350877193, 0.7859649122807018, 0.7157894736842105, 0.6421052631578947, 0.543859649122807, 0.43859649122807015, 0.24912280701754386, 0.22807017543859648, 0.21754385964912282, 0.19649122807017544, 0.17192982456140352, 0.1649122807017544, 0.14385964912280702, 0.13333333333333333, 0.11929824561403508, 0.11929824561403508, 0.12280701754385964, 0.12280701754385964, 0.12280701754385964, 0.12280701754385964, 0.12280701754385964, 0.12280701754385964, 0.12280701754385964, 0.12280701754385964, 0.12280701754385964, 0.12280701754385964, 0.12280701754385964, 0.12631578947368421, 0.12631578947368421, 0.12631578947368421, 0.12982456140350876, 0.13333333333333333, 0.12982456140350876, 0.12982456140350876, 0.13333333333333333, 0.14035087719298245, 0.14035087719298245, 0.14385964912280702, 0.15087719298245614, 0.15087719298245614, 0.15087719298245614, 0.18947368421052632, 0.19649122807017544, 0.20701754385964913, 0.21403508771929824, 0.3263157894736842], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/zf-DNL.gap.json b/pfam_gap_rates/zf-DNL.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..19d291520f7e95cb088e4828212fb1d9d04cbe83
--- /dev/null
+++ b/pfam_gap_rates/zf-DNL.gap.json
@@ -0,0 +1 @@
+{"family": "zf-DNL", "n_seqs": 367, "length": 73, "gap_rates": [0.8392370572207084, 0.07356948228882834, 0.02997275204359673, 0.027247956403269755, 0.027247956403269755, 0.02452316076294278, 0.01907356948228883, 0.01907356948228883, 0.9346049046321526, 0.9346049046321526, 0.01907356948228883, 0.01907356948228883, 0.01907356948228883, 0.01634877384196185, 0.01634877384196185, 0.01634877384196185, 0.013623978201634877, 0.013623978201634877, 0.010899182561307902, 0.008174386920980926, 0.008174386920980926, 0.008174386920980926, 0.008174386920980926, 0.008174386920980926, 0.008174386920980926, 0.008174386920980926, 0.010899182561307902, 0.010899182561307902, 0.010899182561307902, 0.010899182561307902, 0.010899182561307902, 0.010899182561307902, 0.013623978201634877, 0.013623978201634877, 0.013623978201634877, 0.013623978201634877, 0.01907356948228883, 0.021798365122615803, 0.01907356948228883, 0.01907356948228883, 0.021798365122615803, 0.021798365122615803, 0.021798365122615803, 0.021798365122615803, 0.01907356948228883, 0.021798365122615803, 0.021798365122615803, 0.021798365122615803, 0.021798365122615803, 0.9400544959128065, 0.027247956403269755, 0.03814713896457766, 0.7247956403269755, 0.8828337874659401, 0.9373297002724795, 0.8937329700272479, 0.8610354223433242, 0.6730245231607629, 0.22343324250681199, 0.16621253405994552, 0.1880108991825613, 0.19346049046321526, 0.19618528610354224, 0.2125340599455041, 0.22615803814713897, 0.22615803814713897, 0.23160762942779292, 0.23705722070844687, 0.23978201634877383, 0.24795640326975477, 0.2670299727520436, 0.3678474114441417, 0.779291553133515], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/zf-Di19.gap.json b/pfam_gap_rates/zf-Di19.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..4472842dc42d1912a5631a94dbb4ed9fdd83ae99
--- /dev/null
+++ b/pfam_gap_rates/zf-Di19.gap.json
@@ -0,0 +1 @@
+{"family": "zf-Di19", "n_seqs": 462, "length": 66, "gap_rates": [0.8203463203463204, 0.31385281385281383, 0.08008658008658008, 0.015151515151515152, 0.015151515151515152, 0.015151515151515152, 0.012987012987012988, 0.010822510822510822, 0.010822510822510822, 0.008658008658008658, 0.487012987012987, 0.008658008658008658, 0.004329004329004329, 0.004329004329004329, 0.006493506493506494, 0.008658008658008658, 0.004329004329004329, 0.004329004329004329, 0.004329004329004329, 0.004329004329004329, 0.004329004329004329, 0.004329004329004329, 0.004329004329004329, 0.004329004329004329, 0.021645021645021644, 0.004329004329004329, 0.006493506493506494, 0.008658008658008658, 0.021645021645021644, 0.047619047619047616, 0.017316017316017316, 0.030303030303030304, 0.030303030303030304, 0.03463203463203463, 0.04329004329004329, 0.045454545454545456, 0.05194805194805195, 0.05194805194805195, 0.05194805194805195, 0.5995670995670995, 0.6277056277056277, 0.6277056277056277, 0.6796536796536796, 0.6277056277056277, 0.6255411255411255, 0.5995670995670995, 0.05194805194805195, 0.09740259740259741, 0.8982683982683982, 0.8961038961038961, 0.09523809523809523, 0.09740259740259741, 0.12987012987012986, 0.9264069264069265, 0.9134199134199135, 0.06926406926406926, 0.07142857142857142, 0.0735930735930736, 0.08008658008658008, 0.08658008658008658, 0.09523809523809523, 0.1038961038961039, 0.11904761904761904, 0.17316017316017315, 0.24458874458874458, 0.5043290043290043], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/zf-H2C2_5.gap.json b/pfam_gap_rates/zf-H2C2_5.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..bd7e9e1b2a0efbe1397451fa9a6a19c5fcc01c90
--- /dev/null
+++ b/pfam_gap_rates/zf-H2C2_5.gap.json
@@ -0,0 +1 @@
+{"family": "zf-H2C2_5", "n_seqs": 4262, "length": 26, "gap_rates": [0.07907085875175973, 0.058423275457531676, 0.0018770530267480056, 0.001642421398404505, 0.0007038948850305022, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0002346316283435007, 0.0002346316283435007, 0.005396527451900516, 0.006100422336931018, 0.836931018301267, 0.012200844673862036, 0.01337400281557954, 0.07672454246832473, 0.21234162365086814], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/zf-HIT.gap.json b/pfam_gap_rates/zf-HIT.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..3a009e8aa973d2141d056d26335f6abed0dfd8e4
--- /dev/null
+++ b/pfam_gap_rates/zf-HIT.gap.json
@@ -0,0 +1 @@
+{"family": "zf-HIT", "n_seqs": 973, "length": 33, "gap_rates": [0.7985611510791367, 0.5704008221993834, 0.2672147995889003, 0.07605344295991778, 0.019527235354573486, 0.018499486125385406, 0.013360739979445015, 0.9023638232271326, 0.8992805755395683, 0.0020554984583761563, 0.0020554984583761563, 0.0020554984583761563, 0.4460431654676259, 0.0020554984583761563, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0010277492291880781, 0.0010277492291880781, 0.0041109969167523125, 0.006166495375128468, 0.012332990750256937, 0.012332990750256937, 0.015416238437821172, 0.015416238437821172, 0.08735868448098665, 0.36896197327852004], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/zf-NF-X1.gap.json b/pfam_gap_rates/zf-NF-X1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f0d328a773b9d7086b62352c72fe0c444abab26d
--- /dev/null
+++ b/pfam_gap_rates/zf-NF-X1.gap.json
@@ -0,0 +1 @@
+{"family": "zf-NF-X1", "n_seqs": 2210, "length": 28, "gap_rates": [0.20497737556561085, 0.19638009049773755, 0.8945701357466064, 0.9004524886877828, 0.9253393665158371, 0.920814479638009, 0.8995475113122172, 0.8941176470588236, 0.2846153846153846, 0.045701357466063346, 0.041176470588235294, 0.03891402714932127, 0.038461538461538464, 0.03755656108597285, 0.007239819004524887, 0.00045248868778280545, 0.006334841628959276, 0.92579185520362, 0.06968325791855204, 0.14389140271493212, 0.15294117647058825, 0.1669683257918552, 0.9457013574660633, 0.17330316742081447, 0.9307692307692308, 0.21221719457013574, 0.22036199095022624, 0.5932126696832579], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/zf-NOSIP.gap.json b/pfam_gap_rates/zf-NOSIP.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..8cefefe366b7c0d7b5aa7048e6a85446206e2407
--- /dev/null
+++ b/pfam_gap_rates/zf-NOSIP.gap.json
@@ -0,0 +1 @@
+{"family": "zf-NOSIP", "n_seqs": 225, "length": 75, "gap_rates": [0.1288888888888889, 0.10666666666666667, 0.10222222222222223, 0.10222222222222223, 0.10222222222222223, 0.10222222222222223, 0.10222222222222223, 0.08888888888888889, 0.08444444444444445, 0.08, 0.06222222222222222, 0.05333333333333334, 0.05333333333333334, 0.05333333333333334, 0.05333333333333334, 0.08, 0.1288888888888889, 0.20444444444444446, 0.39555555555555555, 0.4711111111111111, 0.4533333333333333, 0.3422222222222222, 0.1511111111111111, 0.057777777777777775, 0.022222222222222223, 0.008888888888888889, 0.0044444444444444444, 0.0044444444444444444, 0.0044444444444444444, 0.0044444444444444444, 0.0044444444444444444, 0.0044444444444444444, 0.0044444444444444444, 0.0044444444444444444, 0.0044444444444444444, 0.0044444444444444444, 0.0044444444444444444, 0.0044444444444444444, 0.0044444444444444444, 0.0044444444444444444, 0.0044444444444444444, 0.0044444444444444444, 0.0044444444444444444, 0.0044444444444444444, 0.0044444444444444444, 0.0044444444444444444, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0044444444444444444, 0.0044444444444444444, 0.017777777777777778, 0.017777777777777778, 0.02666666666666667, 0.02666666666666667, 0.02666666666666667, 0.02666666666666667, 0.02666666666666667, 0.02666666666666667, 0.02666666666666667, 0.02666666666666667, 0.02666666666666667, 0.03111111111111111, 0.04, 0.04, 0.04, 0.07555555555555556, 0.09333333333333334, 0.11555555555555555, 0.1688888888888889], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/zf-NPL4.gap.json b/pfam_gap_rates/zf-NPL4.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..60c38b2341e372af1219c7b4ffc90044d6eb2654
--- /dev/null
+++ b/pfam_gap_rates/zf-NPL4.gap.json
@@ -0,0 +1 @@
+{"family": "zf-NPL4", "n_seqs": 263, "length": 148, "gap_rates": [0.41064638783269963, 0.33079847908745247, 0.2813688212927757, 0.17490494296577946, 0.16730038022813687, 0.16730038022813687, 0.16730038022813687, 0.16730038022813687, 0.16730038022813687, 0.16730038022813687, 0.1596958174904943, 0.1482889733840304, 0.1520912547528517, 0.1482889733840304, 0.14068441064638784, 0.13688212927756654, 0.13688212927756654, 0.12927756653992395, 0.12927756653992395, 0.12547528517110265, 0.12927756653992395, 0.12547528517110265, 0.3650190114068441, 0.12167300380228137, 0.11406844106463879, 0.11406844106463879, 0.11406844106463879, 0.11406844106463879, 0.11406844106463879, 0.10646387832699619, 0.11026615969581749, 0.11026615969581749, 0.10646387832699619, 0.10646387832699619, 0.10646387832699619, 0.10646387832699619, 0.10646387832699619, 0.10266159695817491, 0.10646387832699619, 0.11787072243346007, 0.11406844106463879, 0.12927756653992395, 0.13688212927756654, 0.13307984790874525, 0.12547528517110265, 0.13307984790874525, 0.12927756653992395, 0.12167300380228137, 0.11406844106463879, 0.11026615969581749, 0.10646387832699619, 0.10646387832699619, 0.8631178707224335, 0.8631178707224335, 0.10266159695817491, 0.09885931558935361, 0.09885931558935361, 0.09885931558935361, 0.09885931558935361, 0.09885931558935361, 0.09885931558935361, 0.09885931558935361, 0.09885931558935361, 0.10266159695817491, 0.09885931558935361, 0.09885931558935361, 0.09885931558935361, 0.09885931558935361, 0.10266159695817491, 0.10266159695817491, 0.11787072243346007, 0.11787072243346007, 0.13688212927756654, 0.5665399239543726, 0.5209125475285171, 0.4600760456273764, 0.3916349809885932, 0.3726235741444867, 0.12547528517110265, 0.11026615969581749, 0.11406844106463879, 0.11406844106463879, 0.09885931558935361, 0.09505703422053231, 0.09885931558935361, 0.09885931558935361, 0.09125475285171103, 0.09125475285171103, 0.08745247148288973, 0.09125475285171103, 0.10646387832699619, 0.09885931558935361, 0.11406844106463879, 0.09505703422053231, 0.09505703422053231, 0.09505703422053231, 0.09505703422053231, 0.46387832699619774, 0.8479087452471483, 0.10266159695817491, 0.10646387832699619, 0.12167300380228137, 0.13307984790874525, 0.11787072243346007, 0.09505703422053231, 0.09885931558935361, 0.09885931558935361, 0.09505703422053231, 0.09505703422053231, 0.09505703422053231, 0.09125475285171103, 0.08365019011406843, 0.049429657794676805, 0.045627376425855515, 0.045627376425855515, 0.045627376425855515, 0.045627376425855515, 0.045627376425855515, 0.045627376425855515, 0.045627376425855515, 0.04182509505703422, 0.053231939163498096, 0.053231939163498096, 0.057034220532319393, 0.053231939163498096, 0.053231939163498096, 0.053231939163498096, 0.053231939163498096, 0.053231939163498096, 0.053231939163498096, 0.049429657794676805, 0.053231939163498096, 0.053231939163498096, 0.053231939163498096, 0.053231939163498096, 0.053231939163498096, 0.053231939163498096, 0.053231939163498096, 0.053231939163498096, 0.053231939163498096, 0.053231939163498096, 0.057034220532319393, 0.057034220532319393, 0.057034220532319393, 0.06844106463878327, 0.10266159695817491, 0.11406844106463879, 0.19391634980988592], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/zf-RVT.gap.json b/pfam_gap_rates/zf-RVT.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..6c270559772e352f3ca712e12138ea582a90a225
--- /dev/null
+++ b/pfam_gap_rates/zf-RVT.gap.json
@@ -0,0 +1 @@
+{"family": "zf-RVT", "n_seqs": 818, "length": 103, "gap_rates": [0.5855745721271394, 0.5415647921760391, 0.5171149144254279, 0.5048899755501223, 0.49511002444987773, 0.4743276283618582, 0.4706601466992665, 0.4706601466992665, 0.4706601466992665, 0.4669926650366748, 0.460880195599022, 0.45232273838630804, 0.44987775061124696, 0.4388753056234719, 0.8801955990220048, 0.8814180929095354, 0.8850855745721271, 0.89119804400978, 0.9046454767726161, 0.9339853300733496, 0.9486552567237164, 0.9180929095354523, 0.8960880195599022, 0.8875305623471883, 0.8838630806845966, 0.8801955990220048, 0.8789731051344744, 0.4474327628361858, 0.4229828850855746, 0.4034229828850856, 0.37775061124694376, 0.2860635696821516, 0.8875305623471883, 0.9449877750611247, 0.7713936430317848, 0.2555012224938875, 0.21882640586797067, 0.20293398533007334, 0.1980440097799511, 0.19193154034229828, 0.18948655256723718, 0.18581907090464547, 0.17970660146699266, 0.17359413202933985, 0.1687041564792176, 0.16014669926650366, 0.1491442542787286, 0.13814180929095354, 0.13814180929095354, 0.1356968215158924, 0.13447432762836187, 0.12836185819070906, 0.12224938875305623, 0.1136919315403423, 0.11124694376528117, 0.10880195599022005, 0.10146699266503667, 0.09046454767726161, 0.08190709046454768, 0.07946210268948656, 0.07701711491442542, 0.08190709046454768, 0.07701711491442542, 0.07823960880195599, 0.07823960880195599, 0.07823960880195599, 0.08068459657701711, 0.09535452322738386, 0.9425427872860636, 0.10146699266503667, 0.09535452322738386, 0.07334963325183375, 0.1784841075794621, 0.1295843520782396, 0.1295843520782396, 0.1356968215158924, 0.13447432762836187, 0.9144254278728606, 0.12836185819070906, 0.13447432762836187, 0.13814180929095354, 0.14425427872860636, 0.15036674816625917, 0.1552567237163814, 0.15647921760391198, 0.3374083129584352, 0.16503667481662593, 0.16503667481662593, 0.17359413202933985, 0.1821515892420538, 0.1845965770171149, 0.18581907090464547, 0.1882640586797066, 0.19559902200489, 0.2017114914425428, 0.20537897310513448, 0.21026894865525672, 0.2114914425427873, 0.24205378973105135, 0.2603911980440098, 0.29095354523227385, 0.3215158924205379, 0.3374083129584352], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/zf-RanBP.gap.json b/pfam_gap_rates/zf-RanBP.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d0bd3b2beb7f75c90a49b820f14881b87e00eff3
--- /dev/null
+++ b/pfam_gap_rates/zf-RanBP.gap.json
@@ -0,0 +1 @@
+{"family": "zf-RanBP", "n_seqs": 2665, "length": 32, "gap_rates": [0.5148217636022514, 0.31932457786116325, 0.17898686679174483, 0.0525328330206379, 0.00675422138836773, 0.004127579737335835, 0.00225140712945591, 0.8393996247654785, 0.8382739212007505, 0.011632270168855536, 0.013133208255159476, 0.0, 0.0, 0.0, 0.0, 0.00150093808630394, 0.0, 0.0, 0.0, 0.000375234521575985, 0.000375234521575985, 0.0, 0.0, 0.00075046904315197, 0.001125703564727955, 0.023639774859287054, 0.04878048780487805, 0.14821763602251406, 0.18386491557223264, 0.22851782363977485, 0.44652908067542213, 0.8228893058161351], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/zinc-ribbon_6.gap.json b/pfam_gap_rates/zinc-ribbon_6.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..abf10b9a8922f7ade2f4b44ce69fb48b87eee293
--- /dev/null
+++ b/pfam_gap_rates/zinc-ribbon_6.gap.json
@@ -0,0 +1 @@
+{"family": "zinc-ribbon_6", "n_seqs": 157, "length": 107, "gap_rates": [0.5605095541401274, 0.1464968152866242, 0.08917197452229299, 0.07006369426751592, 0.2802547770700637, 0.06369426751592357, 0.06369426751592357, 0.06369426751592357, 0.06369426751592357, 0.06369426751592357, 0.050955414012738856, 0.044585987261146494, 0.044585987261146494, 0.044585987261146494, 0.044585987261146494, 0.044585987261146494, 0.044585987261146494, 0.044585987261146494, 0.050955414012738856, 0.06369426751592357, 0.044585987261146494, 0.044585987261146494, 0.044585987261146494, 0.044585987261146494, 0.03821656050955414, 0.03821656050955414, 0.03821656050955414, 0.03821656050955414, 0.03821656050955414, 0.044585987261146494, 0.044585987261146494, 0.044585987261146494, 0.050955414012738856, 0.03821656050955414, 0.044585987261146494, 0.05732484076433121, 0.06369426751592357, 0.07006369426751592, 0.07006369426751592, 0.06369426751592357, 0.07643312101910828, 0.08917197452229299, 0.8726114649681529, 0.9044585987261147, 0.9363057324840764, 0.9235668789808917, 0.8789808917197452, 0.7707006369426752, 0.39490445859872614, 0.28662420382165604, 0.267515923566879, 0.2356687898089172, 0.2229299363057325, 0.1910828025477707, 0.18471337579617833, 0.1910828025477707, 0.1592356687898089, 0.15286624203821655, 0.18471337579617833, 0.7707006369426752, 0.9363057324840764, 0.9490445859872612, 0.910828025477707, 0.6815286624203821, 0.08917197452229299, 0.050955414012738856, 0.03184713375796178, 0.025477707006369428, 0.025477707006369428, 0.025477707006369428, 0.025477707006369428, 0.025477707006369428, 0.6050955414012739, 0.025477707006369428, 0.044585987261146494, 0.03184713375796178, 0.025477707006369428, 0.025477707006369428, 0.025477707006369428, 0.025477707006369428, 0.025477707006369428, 0.044585987261146494, 0.07643312101910828, 0.08280254777070063, 0.08280254777070063, 0.05732484076433121, 0.044585987261146494, 0.050955414012738856, 0.08917197452229299, 0.9235668789808917, 0.9299363057324841, 0.9171974522292994, 0.05732484076433121, 0.025477707006369428, 0.025477707006369428, 0.025477707006369428, 0.025477707006369428, 0.025477707006369428, 0.025477707006369428, 0.025477707006369428, 0.025477707006369428, 0.025477707006369428, 0.025477707006369428, 0.03184713375796178, 0.03184713375796178, 0.10191082802547771, 0.33121019108280253], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/zinc_ribbon_16.gap.json b/pfam_gap_rates/zinc_ribbon_16.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d950e4f0532517adb1b77a3bfe655b4779a71783
--- /dev/null
+++ b/pfam_gap_rates/zinc_ribbon_16.gap.json
@@ -0,0 +1 @@
+{"family": "zinc_ribbon_16", "n_seqs": 213, "length": 145, "gap_rates": [0.5258215962441315, 0.5258215962441315, 0.5258215962441315, 0.5211267605633803, 0.5211267605633803, 0.5211267605633803, 0.5258215962441315, 0.5258215962441315, 0.7089201877934272, 0.9342723004694836, 0.892018779342723, 0.5727699530516432, 0.5586854460093896, 0.5305164319248826, 0.5258215962441315, 0.5211267605633803, 0.539906103286385, 0.568075117370892, 0.6619718309859155, 0.6056338028169014, 0.568075117370892, 0.568075117370892, 0.92018779342723, 0.9342723004694836, 0.8967136150234741, 0.5211267605633803, 0.5023474178403756, 0.49765258215962443, 0.48826291079812206, 0.4694835680751174, 0.4647887323943662, 0.4788732394366197, 0.4835680751173709, 0.596244131455399, 0.5633802816901409, 0.5211267605633803, 0.48826291079812206, 0.45539906103286387, 0.3615023474178404, 0.3192488262910798, 0.2863849765258216, 0.3192488262910798, 0.24882629107981222, 0.16901408450704225, 0.15492957746478872, 0.13615023474178403, 0.14084507042253522, 0.13615023474178403, 0.13615023474178403, 0.13615023474178403, 0.13615023474178403, 0.13615023474178403, 0.13615023474178403, 0.13615023474178403, 0.13615023474178403, 0.13615023474178403, 0.13615023474178403, 0.13615023474178403, 0.13615023474178403, 0.13615023474178403, 0.14084507042253522, 0.13615023474178403, 0.14084507042253522, 0.14553990610328638, 0.14553990610328638, 0.16901408450704225, 0.92018779342723, 0.8450704225352113, 0.6009389671361502, 0.4413145539906103, 0.38497652582159625, 0.27699530516431925, 0.28169014084507044, 0.2863849765258216, 0.8356807511737089, 0.92018779342723, 0.9389671361502347, 0.9295774647887324, 0.892018779342723, 0.8075117370892019, 0.5305164319248826, 0.38497652582159625, 0.3380281690140845, 0.37089201877934275, 0.3380281690140845, 0.3192488262910798, 0.3192488262910798, 0.3051643192488263, 0.22065727699530516, 0.2112676056338028, 0.20657276995305165, 0.9342723004694836, 0.19248826291079812, 0.17370892018779344, 0.13145539906103287, 0.11737089201877934, 0.09859154929577464, 0.0892018779342723, 0.08450704225352113, 0.09389671361502347, 0.07981220657276995, 0.07042253521126761, 0.06103286384976526, 0.046948356807511735, 0.046948356807511735, 0.046948356807511735, 0.046948356807511735, 0.046948356807511735, 0.046948356807511735, 0.046948356807511735, 0.046948356807511735, 0.046948356807511735, 0.046948356807511735, 0.046948356807511735, 0.046948356807511735, 0.046948356807511735, 0.046948356807511735, 0.046948356807511735, 0.046948356807511735, 0.051643192488262914, 0.051643192488262914, 0.9436619718309859, 0.9436619718309859, 0.9483568075117371, 0.9436619718309859, 0.9436619718309859, 0.9436619718309859, 0.056338028169014086, 0.06572769953051644, 0.07511737089201878, 0.07511737089201878, 0.07511737089201878, 0.07511737089201878, 0.07511737089201878, 0.07981220657276995, 0.07511737089201878, 0.07981220657276995, 0.08450704225352113, 0.08450704225352113, 0.0892018779342723, 0.0892018779342723, 0.10328638497652583, 0.2112676056338028, 0.755868544600939, 0.9342723004694836], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/zinc_ribbon_5.gap.json b/pfam_gap_rates/zinc_ribbon_5.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..0c10c0c6606c161120c7b7bb39a3f977b6cc65fe
--- /dev/null
+++ b/pfam_gap_rates/zinc_ribbon_5.gap.json
@@ -0,0 +1 @@
+{"family": "zinc_ribbon_5", "n_seqs": 120, "length": 37, "gap_rates": [0.375, 0.2, 0.03333333333333333, 0.016666666666666666, 0.016666666666666666, 0.016666666666666666, 0.016666666666666666, 0.016666666666666666, 0.016666666666666666, 0.016666666666666666, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.03333333333333333, 0.03333333333333333, 0.016666666666666666, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.008333333333333333, 0.016666666666666666, 0.041666666666666664, 0.23333333333333334], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/zn-ribbon_14.gap.json b/pfam_gap_rates/zn-ribbon_14.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f19b4676769c377b8196bb171309dc3cade952c1
--- /dev/null
+++ b/pfam_gap_rates/zn-ribbon_14.gap.json
@@ -0,0 +1 @@
+{"family": "zn-ribbon_14", "n_seqs": 260, "length": 32, "gap_rates": [0.3192307692307692, 0.06923076923076923, 0.0038461538461538464, 0.0038461538461538464, 0.0038461538461538464, 0.0038461538461538464, 0.0038461538461538464, 0.0038461538461538464, 0.0038461538461538464, 0.0038461538461538464, 0.0038461538461538464, 0.0038461538461538464, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.007692307692307693, 0.03461538461538462, 0.046153846153846156, 0.06538461538461539, 0.09615384615384616, 0.19230769230769232, 0.5846153846153846], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file