diff --git a/pfam_gap_rates/2-Hacid_dh_C.gap.json b/pfam_gap_rates/2-Hacid_dh_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..4166293fe3d42ead91bf2dc4bbf51bfc080ac1be
--- /dev/null
+++ b/pfam_gap_rates/2-Hacid_dh_C.gap.json
@@ -0,0 +1 @@
+{"family": "2-Hacid_dh_C", "n_seqs": 5000, "length": 204, "gap_rates": [0.5712, 0.2572, 0.2054, 0.1784, 0.1692, 0.1652, 0.1622, 0.1578, 0.1556, 0.1548, 0.1528, 0.1522, 0.15, 0.1476, 0.1452, 0.1436, 0.1406, 0.138, 0.1362, 0.1336, 0.131, 0.1326, 0.122, 0.765, 0.906, 0.945, 0.9182, 0.8824, 0.6622, 0.5534, 0.291, 0.233, 0.101, 0.0888, 0.0774, 0.07, 0.0642, 0.0576, 0.052, 0.0476, 0.0448, 0.0416, 0.04, 0.0392, 0.0388, 0.039, 0.0384, 0.0374, 0.0374, 0.0368, 0.0366, 0.037, 0.0368, 0.0368, 0.0362, 0.0364, 0.036, 0.0354, 0.035, 0.0348, 0.0346, 0.0342, 0.9294, 0.0342, 0.0344, 0.0344, 0.033, 0.0334, 0.0332, 0.0332, 0.0334, 0.0334, 0.0336, 0.0334, 0.0338, 0.035, 0.039, 0.0944, 0.1252, 0.1468, 0.906, 0.8786, 0.6438, 0.274, 0.2082, 0.1524, 0.1596, 0.099, 0.1016, 0.8918, 0.0628, 0.0482, 0.044, 0.9242, 0.0404, 0.0388, 0.039, 0.0386, 0.0376, 0.0376, 0.037, 0.0434, 0.0352, 0.0348, 0.0348, 0.0344, 0.0346, 0.0352, 0.0394, 0.041, 0.0416, 0.0562, 0.0586, 0.0562, 0.057, 0.0566, 0.047, 0.0444, 0.0432, 0.043, 0.043, 0.0434, 0.0428, 0.043, 0.0426, 0.042, 0.041, 0.04, 0.0406, 0.045, 0.0412, 0.0428, 0.042, 0.0418, 0.0418, 0.0426, 0.0436, 0.0442, 0.0506, 0.0512, 0.051, 0.0518, 0.0516, 0.0508, 0.0504, 0.0506, 0.0512, 0.051, 0.0516, 0.0518, 0.0526, 0.0534, 0.0532, 0.0528, 0.0558, 0.0564, 0.056, 0.056, 0.0944, 0.0564, 0.0574, 0.0576, 0.058, 0.061, 0.0884, 0.0904, 0.0922, 0.098, 0.9034, 0.9042, 0.9066, 0.9112, 0.9154, 0.9442, 0.9136, 0.908, 0.9052, 0.904, 0.8978, 0.0944, 0.1114, 0.101, 0.1808, 0.1178, 0.8986, 0.9428, 0.9146, 0.8922, 0.2948, 0.0864, 0.0832, 0.0826, 0.0838, 0.0836, 0.0838, 0.084, 0.0918, 0.088, 0.0882, 0.089, 0.0892, 0.0954, 0.1024, 0.1496], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/2CSK_N.gap.json b/pfam_gap_rates/2CSK_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e64e2d6fea5f23cbd38b208e1f3e8af44b30cb9a
--- /dev/null
+++ b/pfam_gap_rates/2CSK_N.gap.json
@@ -0,0 +1 @@
+{"family": "2CSK_N", "n_seqs": 570, "length": 165, "gap_rates": [0.6175438596491228, 0.3263157894736842, 0.15964912280701754, 0.10350877192982456, 0.07543859649122807, 0.05964912280701754, 0.0456140350877193, 0.0456140350877193, 0.042105263157894736, 0.042105263157894736, 0.04035087719298246, 0.043859649122807015, 0.03684210526315789, 0.03684210526315789, 0.031578947368421054, 0.031578947368421054, 0.031578947368421054, 0.02982456140350877, 0.028070175438596492, 0.028070175438596492, 0.02982456140350877, 0.02982456140350877, 0.04736842105263158, 0.02982456140350877, 0.028070175438596492, 0.028070175438596492, 0.02456140350877193, 0.02456140350877193, 0.02456140350877193, 0.02456140350877193, 0.02456140350877193, 0.02280701754385965, 0.02456140350877193, 0.02456140350877193, 0.02280701754385965, 0.02280701754385965, 0.02456140350877193, 0.02456140350877193, 0.02280701754385965, 0.028070175438596492, 0.0456140350877193, 0.8859649122807017, 0.9368421052631579, 0.9122807017543859, 0.7929824561403509, 0.10701754385964912, 0.13508771929824562, 0.9438596491228071, 0.13157894736842105, 0.15263157894736842, 0.14385964912280702, 0.1280701754385965, 0.11578947368421053, 0.07017543859649122, 0.06842105263157895, 0.06666666666666667, 0.06315789473684211, 0.054385964912280704, 0.042105263157894736, 0.04035087719298246, 0.04035087719298246, 0.03859649122807018, 0.05087719298245614, 0.06140350877192982, 0.9456140350877194, 0.23508771929824562, 0.14385964912280702, 0.03684210526315789, 0.03508771929824561, 0.02631578947368421, 0.01929824561403509, 0.014035087719298246, 0.014035087719298246, 0.012280701754385965, 0.010526315789473684, 0.010526315789473684, 0.010526315789473684, 0.06666666666666667, 0.08070175438596491, 0.015789473684210527, 0.01929824561403509, 0.9456140350877194, 0.015789473684210527, 0.014035087719298246, 0.014035087719298246, 0.015789473684210527, 0.014035087719298246, 0.014035087719298246, 0.012280701754385965, 0.014035087719298246, 0.014035087719298246, 0.8333333333333334, 0.8947368421052632, 0.9280701754385965, 0.8649122807017544, 0.7789473684210526, 0.01929824561403509, 0.14035087719298245, 0.1649122807017544, 0.13508771929824562, 0.6631578947368421, 0.868421052631579, 0.9157894736842105, 0.8298245614035088, 0.46842105263157896, 0.23157894736842105, 0.356140350877193, 0.8421052631578947, 0.48596491228070177, 0.24736842105263157, 0.3649122807017544, 0.06842105263157895, 0.054385964912280704, 0.03508771929824561, 0.028070175438596492, 0.02982456140350877, 0.021052631578947368, 0.021052631578947368, 0.02456140350877193, 0.02456140350877193, 0.02456140350877193, 0.02456140350877193, 0.02280701754385965, 0.021052631578947368, 0.021052631578947368, 0.021052631578947368, 0.017543859649122806, 0.01929824561403509, 0.017543859649122806, 0.017543859649122806, 0.01929824561403509, 0.03859649122807018, 0.03508771929824561, 0.056140350877192984, 0.32280701754385965, 0.34210526315789475, 0.3894736842105263, 0.9280701754385965, 0.9385964912280702, 0.7017543859649122, 0.3140350877192982, 0.5368421052631579, 0.4105263157894737, 0.8385964912280702, 0.08771929824561403, 0.04912280701754386, 0.04736842105263158, 0.02982456140350877, 0.02982456140350877, 0.02982456140350877, 0.02982456140350877, 0.031578947368421054, 0.03508771929824561, 0.03684210526315789, 0.042105263157894736, 0.05263157894736842, 0.06315789473684211, 0.07543859649122807, 0.0824561403508772, 0.10175438596491228, 0.12280701754385964, 0.14736842105263157, 0.1912280701754386, 0.30350877192982456, 0.5140350877192983], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/2OG-FeII_Oxy_2.gap.json b/pfam_gap_rates/2OG-FeII_Oxy_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ff6b730e99a67d1a1c51fd0d457b9339cb12ec29
--- /dev/null
+++ b/pfam_gap_rates/2OG-FeII_Oxy_2.gap.json
@@ -0,0 +1 @@
+{"family": "2OG-FeII_Oxy_2", "n_seqs": 2133, "length": 294, "gap_rates": [0.8663853727144867, 0.7210501640881388, 0.6558837318330989, 0.6150961087669948, 0.602906704172527, 0.593061415846226, 0.5850914205344585, 0.5794655414908579, 0.5738396624472574, 0.5630567276136896, 0.5588373183309893, 0.5527426160337553, 0.5480543834974215, 0.5433661509610876, 0.5358649789029536, 0.5264885138302859, 0.5213314580403188, 0.5128926394749179, 0.510548523206751, 0.5072667604313174, 0.5049226441631505, 0.5025785278949836, 0.9156118143459916, 0.9324894514767933, 0.8884200656352556, 0.516643225503985, 0.496952648851383, 0.49460853258321613, 0.487107360525082, 0.9479606188466948, 0.48148148148148145, 0.4739803094233474, 0.47304266291608066, 0.4674167838724801, 0.4646038443506798, 0.46319737458977966, 0.45897796530707924, 0.45382090951711207, 0.8574777308954524, 0.4505391467416784, 0.4430379746835443, 0.4388185654008439, 0.4345991561181435, 0.43319268635724334, 0.4280356305672761, 0.4219409282700422, 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\ No newline at end of file
diff --git a/pfam_gap_rates/3-alpha.gap.json b/pfam_gap_rates/3-alpha.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..365eb315cf39b004af377e7dd62ef84f7aa6b4f0
--- /dev/null
+++ b/pfam_gap_rates/3-alpha.gap.json
@@ -0,0 +1 @@
+{"family": "3-alpha", "n_seqs": 207, "length": 44, "gap_rates": [0.2222222222222222, 0.05314009661835749, 0.033816425120772944, 0.024154589371980676, 0.014492753623188406, 0.00966183574879227, 0.00966183574879227, 0.00966183574879227, 0.00966183574879227, 0.00966183574879227, 0.00966183574879227, 0.00966183574879227, 0.014492753623188406, 0.00966183574879227, 0.01932367149758454, 0.004830917874396135, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.004830917874396135, 0.0, 0.0, 0.07729468599033816, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.004830917874396135, 0.004830917874396135, 0.033816425120772944, 0.04830917874396135, 0.08695652173913043, 0.13526570048309178, 0.22705314009661837, 0.4057971014492754, 0.7536231884057971], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/40S_S4_C.gap.json b/pfam_gap_rates/40S_S4_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c644248606b61b2a24d20f84028081f4491e53c6
--- /dev/null
+++ b/pfam_gap_rates/40S_S4_C.gap.json
@@ -0,0 +1 @@
+{"family": "40S_S4_C", "n_seqs": 433, "length": 49, "gap_rates": [0.011547344110854504, 0.009237875288683603, 0.006928406466512702, 0.006928406466512702, 0.006928406466512702, 0.006928406466512702, 0.004618937644341801, 0.004618937644341801, 0.004618937644341801, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0023094688221709007, 0.0023094688221709007, 0.9445727482678984, 0.03233256351039261, 0.13163972286374134, 0.0023094688221709007, 0.0023094688221709007, 0.0023094688221709007, 0.004618937644341801, 0.006928406466512702, 0.006928406466512702, 0.006928406466512702, 0.006928406466512702, 0.009237875288683603, 0.011547344110854504, 0.013856812933025405, 0.016166281755196306, 0.020785219399538105, 0.020785219399538105, 0.020785219399538105, 0.025404157043879907, 0.03002309468822171, 0.03002309468822171, 0.03233256351039261, 0.04387990762124711, 0.04849884526558892, 0.04849884526558892, 0.053117782909930716, 0.06697459584295612, 0.08545034642032333, 0.09468822170900693, 0.22632794457274827, 0.6581986143187067], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/4HBT.gap.json b/pfam_gap_rates/4HBT.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..20f3486a3003233eb47f7f8206ca0e02fb2f23e3
--- /dev/null
+++ b/pfam_gap_rates/4HBT.gap.json
@@ -0,0 +1 @@
+{"family": "4HBT", "n_seqs": 5000, "length": 87, "gap_rates": [0.6156, 0.2288, 0.136, 0.0912, 0.0834, 0.0666, 0.051, 0.0428, 0.0378, 0.033, 0.0312, 0.0274, 0.0238, 0.0228, 0.0218, 0.0212, 0.0206, 0.0196, 0.0196, 0.0188, 0.018, 0.0184, 0.018, 0.0174, 0.0166, 0.0188, 0.1518, 0.706, 0.7434, 0.7956, 0.903, 0.8068, 0.7674, 0.7234, 0.6554, 0.4234, 0.0944, 0.0132, 0.0074, 0.003, 0.0026, 0.0024, 0.0022, 0.002, 0.0016, 0.001, 0.0006, 0.0006, 0.0006, 0.0008, 0.0016, 0.0016, 0.0022, 0.002, 0.0018, 0.207, 0.0114, 0.0026, 0.0032, 0.0034, 0.0038, 0.004, 0.0046, 0.0068, 0.0112, 0.0132, 0.0158, 0.0182, 0.021, 0.023, 0.0268, 0.0296, 0.0318, 0.0336, 0.0378, 0.042, 0.0448, 0.0504, 0.0666, 0.1066, 0.1522, 0.208, 0.3172, 0.4364, 0.5914, 0.7562, 0.9244], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/5_3_exonuc_N.gap.json b/pfam_gap_rates/5_3_exonuc_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d3a97e19e93f36d3773c76290c4ace15d141d1f4
--- /dev/null
+++ b/pfam_gap_rates/5_3_exonuc_N.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/5_nucleotid.gap.json b/pfam_gap_rates/5_nucleotid.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..06ffb475f5d0ed6facee90c868fc107460557f1e
--- /dev/null
+++ b/pfam_gap_rates/5_nucleotid.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/7TM-7TMR_HD.gap.json b/pfam_gap_rates/7TM-7TMR_HD.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..56033a065f0b69ca4c38d902c039b9584e48c2ac
--- /dev/null
+++ b/pfam_gap_rates/7TM-7TMR_HD.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/7TM_GPCR_Srsx.gap.json b/pfam_gap_rates/7TM_GPCR_Srsx.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..9515a4a51513657528f79da99d08619ed6845456
--- /dev/null
+++ b/pfam_gap_rates/7TM_GPCR_Srsx.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/7TM_GPCR_Str.gap.json b/pfam_gap_rates/7TM_GPCR_Str.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..2b26e1bb215d0820f01022a41c3f072ed23b5094
--- /dev/null
+++ b/pfam_gap_rates/7TM_GPCR_Str.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/7tm_3.gap.json b/pfam_gap_rates/7tm_3.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..886a3b041a41c1a22fa009590a484236fe1d83fc
--- /dev/null
+++ b/pfam_gap_rates/7tm_3.gap.json
@@ -0,0 +1 @@
+{"family": "7tm_3", "n_seqs": 2318, "length": 291, "gap_rates": [0.7968075927523728, 0.42062122519413286, 0.24201898188093185, 0.2001725625539258, 0.1626402070750647, 0.13761863675582398, 0.12985332182916307, 0.1276962899050906, 0.1264020707506471, 0.12338222605694564, 0.12338222605694564, 0.12122519413287317, 0.12036238136324418, 0.11949956859361519, 0.12812769628990509, 0.11949956859361519, 0.11647972389991372, 0.13287316652286454, 0.12381363244176014, 0.11561691113028473, 0.10396893874029335, 0.11993097497842968, 0.09836065573770492, 0.09447799827437446, 0.09447799827437446, 0.09361518550474547, 0.09188955996548749, 0.090595340811044, 0.09016393442622951, 0.08930112165660052, 0.08886971527178603, 0.08714408973252805, 0.08671268334771355, 0.08584987057808456, 0.08498705780845557, 0.08369283865401209, 0.08369283865401209, 0.09016393442622951, 0.08412424503882658, 0.8584987057808455, 0.08584987057808456, 0.08714408973252805, 0.4288179465056083, 0.09706643658326143, 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\ No newline at end of file
diff --git a/pfam_gap_rates/A2M_N_2.gap.json b/pfam_gap_rates/A2M_N_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..8394b23217a6f5bdc2ac6415a168b6134e427a11
--- /dev/null
+++ b/pfam_gap_rates/A2M_N_2.gap.json
@@ -0,0 +1 @@
+{"family": "A2M_N_2", "n_seqs": 1001, "length": 193, "gap_rates": [0.6133866133866134, 0.41358641358641357, 0.2997002997002997, 0.22377622377622378, 0.19480519480519481, 0.17082917082917082, 0.13786213786213786, 0.11288711288711288, 0.08791208791208792, 0.07892107892107893, 0.06793206793206794, 0.06693306693306693, 0.06593406593406594, 0.06393606393606394, 0.060939060939060936, 0.059940059940059943, 0.055944055944055944, 0.053946053946053944, 0.05194805194805195, 0.05094905094905095, 0.05194805194805195, 0.052947052947052944, 0.057942057942057944, 0.055944055944055944, 0.3066933066933067, 0.46553446553446554, 0.5244755244755245, 0.6323676323676324, 0.7792207792207793, 0.5884115884115884, 0.4975024975024975, 0.44155844155844154, 0.34565434565434566, 0.23176823176823177, 0.18281718281718282, 0.15484515484515485, 0.16683316683316685, 0.5974025974025974, 0.47052947052947053, 0.7802197802197802, 0.916083916083916, 0.8561438561438561, 0.6823176823176823, 0.4115884115884116, 0.37462537462537465, 0.052947052947052944, 0.03696303696303696, 0.030969030969030968, 0.030969030969030968, 0.029970029970029972, 0.03596403596403597, 0.03296703296703297, 0.7092907092907093, 0.056943056943056944, 0.3106893106893107, 0.0999000999000999, 0.0979020979020979, 0.9430569430569431, 0.948051948051948, 0.9470529470529471, 0.939060939060939, 0.13086913086913088, 0.5404595404595405, 0.5154845154845155, 0.43756243756243757, 0.8351648351648352, 0.8721278721278721, 0.9090909090909091, 0.9340659340659341, 0.8861138861138861, 0.8661338661338661, 0.7432567432567433, 0.3786213786213786, 0.33666333666333664, 0.3176823176823177, 0.2837162837162837, 0.06493506493506493, 0.18981018981018982, 0.014985014985014986, 0.012987012987012988, 0.01098901098901099, 0.01098901098901099, 0.01098901098901099, 0.011988011988011988, 0.01098901098901099, 0.013986013986013986, 0.011988011988011988, 0.007992007992007992, 0.005994005994005994, 0.005994005994005994, 0.007992007992007992, 0.006993006993006993, 0.005994005994005994, 0.005994005994005994, 0.5864135864135864, 0.007992007992007992, 0.006993006993006993, 0.006993006993006993, 0.00999000999000999, 0.4065934065934066, 0.36563436563436563, 0.04295704295704296, 0.04095904095904096, 0.5494505494505495, 0.5724275724275725, 0.5934065934065934, 0.7052947052947053, 0.8581418581418582, 0.8691308691308691, 0.8991008991008991, 0.9310689310689311, 0.9470529470529471, 0.9340659340659341, 0.9280719280719281, 0.8881118881118881, 0.8621378621378621, 0.8471528471528471, 0.6123876123876124, 0.5804195804195804, 0.5594405594405595, 0.5364635364635365, 0.016983016983016984, 0.008991008991008992, 0.015984015984015984, 0.011988011988011988, 0.008991008991008992, 0.008991008991008992, 0.007992007992007992, 0.007992007992007992, 0.007992007992007992, 0.007992007992007992, 0.008991008991008992, 0.007992007992007992, 0.006993006993006993, 0.5664335664335665, 0.024975024975024976, 0.02197802197802198, 0.015984015984015984, 0.011988011988011988, 0.011988011988011988, 0.01098901098901099, 0.012987012987012988, 0.013986013986013986, 0.014985014985014986, 0.015984015984015984, 0.4675324675324675, 0.9300699300699301, 0.7122877122877123, 0.04995004995004995, 0.8111888111888111, 0.04295704295704296, 0.04095904095904096, 0.03296703296703297, 0.024975024975024976, 0.015984015984015984, 0.015984015984015984, 0.015984015984015984, 0.015984015984015984, 0.015984015984015984, 0.016983016983016984, 0.015984015984015984, 0.015984015984015984, 0.015984015984015984, 0.015984015984015984, 0.015984015984015984, 0.13586413586413587, 0.13586413586413587, 0.15584415584415584, 0.016983016983016984, 0.5284715284715285, 0.6193806193806194, 0.7362637362637363, 0.903096903096903, 0.9440559440559441, 0.8451548451548452, 0.6723276723276723, 0.6053946053946054, 0.5184815184815185, 0.017982017982017984, 0.01998001998001998, 0.02097902097902098, 0.02097902097902098, 0.023976023976023976, 0.023976023976023976, 0.03296703296703297, 0.03696303696303696, 0.04395604395604396, 0.04695304695304695, 0.05194805194805195, 0.061938061938061936, 0.0989010989010989, 0.13986013986013987, 0.2957042957042957], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/A2M_comp.gap.json b/pfam_gap_rates/A2M_comp.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..51b25c14026af5ec964b7fb822b40ba92f789012
--- /dev/null
+++ b/pfam_gap_rates/A2M_comp.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/AAA_15.gap.json b/pfam_gap_rates/AAA_15.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..90a66385d060721e27d01f361cc0d70606afdad4
--- /dev/null
+++ b/pfam_gap_rates/AAA_15.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/AAA_19.gap.json b/pfam_gap_rates/AAA_19.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..61cb212acad110044b62adc860522554bf6f43aa
--- /dev/null
+++ b/pfam_gap_rates/AAA_19.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/AAA_22.gap.json b/pfam_gap_rates/AAA_22.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..314cad09e200d437835ca4fe6abaf263149321ed
--- /dev/null
+++ b/pfam_gap_rates/AAA_22.gap.json
@@ -0,0 +1 @@
+{"family": "AAA_22", "n_seqs": 2045, "length": 180, "gap_rates": [0.8992665036674816, 0.4396088019559902, 0.2865525672371638, 0.18386308068459659, 0.12078239608801956, 0.06503667481662592, 0.0469437652811736, 0.039119804400977995, 0.03276283618581907, 0.03080684596577017, 0.029339853300733496, 0.02444987775061125, 0.0234718826405868, 0.0234718826405868, 0.022982885085574573, 0.022982885085574573, 0.022493887530562348, 0.022493887530562348, 0.022982885085574573, 0.022982885085574573, 0.022493887530562348, 0.022493887530562348, 0.022493887530562348, 0.022004889975550123, 0.022493887530562348, 0.02689486552567237, 0.06601466992665037, 0.297799511002445, 0.48948655256723717, 0.621515892420538, 0.7574572127139364, 0.7633251833740832, 0.7535452322738386, 0.7422982885085575, 0.6885085574572127, 0.8816625916870415, 0.9193154034229829, 0.9310513447432763, 0.9442542787286063, 0.9242053789731052, 0.9066014669926651, 0.8224938875305623, 0.5926650366748166, 0.08166259168704157, 0.05525672371638142, 0.03227383863080684, 0.03178484107579462, 0.026405867970660146, 0.9090464547677262, 0.839119804400978, 0.022982885085574573, 0.022982885085574573, 0.022493887530562348, 0.022982885085574573, 0.021515892420537898, 0.022004889975550123, 0.021515892420537898, 0.03765281173594132, 0.917359413202934, 0.687041564792176, 0.12811735941320293, 0.023960880195599023, 0.022493887530562348, 0.018092909535452322, 0.017603911980440097, 0.019070904645476772, 0.018092909535452322, 0.018092909535452322, 0.017603911980440097, 0.017114914425427872, 0.017603911980440097, 0.018092909535452322, 0.019070904645476772, 0.019070904645476772, 0.03276283618581907, 0.04547677261613692, 0.036185819070904644, 0.04743276283618582, 0.05378973105134474, 0.6929095354523227, 0.7726161369193154, 0.8034229828850856, 0.8371638141809291, 0.8894865525672372, 0.9036674816625917, 0.9178484107579462, 0.9276283618581908, 0.9427872860635697, 0.9393643031784841, 0.9222493887530563, 0.9090464547677262, 0.8973105134474327, 0.8679706601466992, 0.8259168704156479, 0.7877750611246944, 0.7320293398533008, 0.6425427872860636, 0.5041564792176039, 0.38581907090464546, 0.1980440097799511, 0.062102689486552565, 0.037163814180929094, 0.03227383863080684, 0.030317848410757946, 0.02885085574572127, 0.02787286063569682, 0.8982885085574572, 0.023960880195599023, 0.023960880195599023, 0.0234718826405868, 0.02493887530562347, 0.02493887530562347, 0.02591687041564792, 0.02689486552567237, 0.028361858190709046, 0.027383863080684596, 0.02885085574572127, 0.03569682151589242, 0.035207823960880194, 0.5965770171149144, 0.8948655256723717, 0.6210268948655256, 0.5462102689486552, 0.36039119804400976, 0.1902200488997555, 0.0234718826405868, 0.015158924205378973, 0.015158924205378973, 0.01613691931540342, 0.017603911980440097, 0.018092909535452322, 0.018092909535452322, 0.019070904645476772, 0.020537897310513448, 0.9344743276283619, 0.02591687041564792, 0.5848410757946211, 0.7638141809290954, 0.8997555012224939, 0.6577017114914425, 0.05085574572127139, 0.8616136919315404, 0.9452322738386308, 0.8992665036674816, 0.7907090464547677, 0.05183374083129584, 0.05427872860635697, 0.05721271393643032, 0.06308068459657702, 0.06845965770171149, 0.07139364303178485, 0.07530562347188265, 0.11687041564792176, 0.11687041564792176, 0.12567237163814182, 0.14083129584352078, 0.1569682151589242, 0.4669926650366748, 0.5628361858190709, 0.5853300733496333, 0.5354523227383863, 0.43276283618581907, 0.21907090464547677, 0.2136919315403423, 0.2176039119804401, 0.21809290953545232, 0.2254278728606357, 0.2317848410757946, 0.23814180929095355, 0.25476772616136917, 0.28117359413202936, 0.3212713936430318, 0.3511002444987775, 0.37897310513447435, 0.41711491442542786, 0.4356968215158924, 0.48361858190709045, 0.5290953545232274, 0.6039119804400978, 0.7017114914425427], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/AAA_33.gap.json b/pfam_gap_rates/AAA_33.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..44389bb60dff25fee05891ad31e25999499e228f
--- /dev/null
+++ b/pfam_gap_rates/AAA_33.gap.json
@@ -0,0 +1 @@
+{"family": "AAA_33", "n_seqs": 2382, "length": 167, "gap_rates": [0.32997481108312343, 0.16288832913518053, 0.10663308144416457, 0.08270361041141898, 0.07976490344248531, 0.07052896725440806, 0.06801007556675064, 0.06717044500419815, 0.06423173803526448, 0.06297229219143577, 0.06255247691015953, 0.06213266162888329, 0.06213266162888329, 0.06213266162888329, 0.06213266162888329, 0.06255247691015953, 0.06213266162888329, 0.061712846347607056, 0.06842989084802686, 0.06842989084802686, 0.21074727120067172, 0.16876574307304787, 0.09151973131821999, 0.07514693534844669, 0.7909319899244333, 0.9303106633081444, 0.8631402183039463, 0.6523929471032746, 0.0654911838790932, 0.06507136859781697, 0.06255247691015953, 0.06087321578505458, 0.060453400503778336, 0.060453400503778336, 0.06087321578505458, 0.06087321578505458, 0.9496221662468514, 0.9450041981528128, 0.0675902602854744, 0.07682619647355164, 0.08354324097397145, 0.09697732997481108, 0.10537363560033586, 0.11544920235096558, 0.17716204869857263, 0.7418136020151134, 0.8438287153652393, 0.9395465994962217, 0.9122586062132662, 0.7846347607052897, 0.6985726280436608, 0.2052896725440806, 0.2753988245172124, 0.25482787573467675, 0.2749790092359362, 0.2959697732997481, 0.3052057094878254, 0.3438287153652393, 0.8832913518052057, 0.8975650713685979, 0.9269521410579346, 0.9483627204030227, 0.9349286314021831, 0.9130982367758187, 0.8900083963056256, 0.8669185558354324, 0.35600335852225024, 0.36733837111670864, 0.33921074727120065, 0.30268681780016793, 0.9181360201511335, 0.26154492023509657, 0.2518891687657431, 0.2346767422334173, 0.20445004198152814, 0.17338371116708648, 0.16498740554156172, 0.15113350125944586, 0.10453400503778337, 0.10873215785054575, 0.21998320738874896, 0.09655751469353484, 0.08438287153652393, 0.07052896725440806, 0.09697732997481108, 0.07976490344248531, 0.06507136859781697, 0.05709487825356843, 0.0491183879093199, 0.047019311502938706, 0.04743912678421495, 0.04659949622166247, 0.04659949622166247, 0.9156171284634761, 0.04617968094038623, 0.04659949622166247, 0.04450041981528128, 0.044920235096557515, 0.054575986565911, 0.054575986565911, 0.051217464315701094, 0.05499580184718724, 0.055415617128463476, 0.05877413937867338, 0.06255247691015953, 0.060453400503778336, 0.061712846347607056, 0.061293031066330814, 0.06339210747271201, 0.061712846347607056, 0.06339210747271201, 0.061712846347607056, 0.06423173803526448, 0.06507136859781697, 0.07388748950461797, 0.20235096557514692, 0.18597816960537364, 0.09319899244332494, 0.12174643157010916, 0.08648194794290512, 0.0852225020990764, 0.07598656591099916, 0.07346767422334173, 0.07178841309823678, 0.07220822837951302, 0.07262804366078925, 0.07682619647355164, 0.08060453400503778, 0.0818639798488665, 0.08354324097397145, 0.08438287153652393, 0.08564231738035265, 0.08984047019311503, 0.0927791771620487, 0.09445843828715365, 0.09571788413098237, 0.09697732997481108, 0.10075566750629723, 0.11083123425692695, 0.11712846347607053, 0.12342569269521411, 0.13727959697732997, 0.17548278757346766, 0.4072208228379513, 0.9399664147774979, 0.8984047019311503, 0.49622166246851385, 0.5503778337531486, 0.5818639798488665, 0.6213266162888329, 0.5415617128463476, 0.36481947942905124, 0.3702770780856423, 0.3853904282115869, 0.3954659949622166, 0.4080604534005038, 0.418975650713686, 0.43702770780856426, 0.44710327455919396, 0.464735516372796, 0.4890848026868178, 0.5134340890008396, 0.5474391267842149, 0.5982367758186398, 0.6469353484466834, 0.7149454240134341, 0.7930310663308144], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/AAA_9.gap.json b/pfam_gap_rates/AAA_9.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..4dbff995893d53f3f661c7028f146bb9363c477a
--- /dev/null
+++ b/pfam_gap_rates/AAA_9.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/AATase.gap.json b/pfam_gap_rates/AATase.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..685185971360c0f443a9763f2fbb8d500220ffc2
--- /dev/null
+++ b/pfam_gap_rates/AATase.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/AA_kinase.gap.json b/pfam_gap_rates/AA_kinase.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..054be4ba6dbf57658672526586c6fca8b0dd990e
--- /dev/null
+++ b/pfam_gap_rates/AA_kinase.gap.json
@@ -0,0 +1 @@
+{"family": "AA_kinase", "n_seqs": 5000, "length": 343, "gap_rates": [0.6068, 0.2076, 0.0902, 0.0706, 0.0562, 0.0534, 0.0508, 0.0496, 0.0486, 0.048, 0.0484, 0.048, 0.0476, 0.8588, 0.0842, 0.0754, 0.0836, 0.0838, 0.5572, 0.6384, 0.9408, 0.7908, 0.5792, 0.5516, 0.5232, 0.5144, 0.0626, 0.0562, 0.0462, 0.041, 0.0382, 0.0382, 0.038, 0.0376, 0.0376, 0.0376, 0.037, 0.2048, 0.111, 0.0668, 0.046, 0.0446, 0.038, 0.0644, 0.036, 0.034, 0.034, 0.0338, 0.0338, 0.034, 0.7384, 0.1752, 0.0344, 0.0338, 0.0338, 0.0338, 0.0338, 0.034, 0.034, 0.0346, 0.0352, 0.8746, 0.9248, 0.9432, 0.9016, 0.8346, 0.5326, 0.2616, 0.084, 0.0748, 0.0674, 0.0636, 0.064, 0.0676, 0.0706, 0.2524, 0.7686, 0.8192, 0.8334, 0.8512, 0.8598, 0.8752, 0.8874, 0.905, 0.9256, 0.9384, 0.9166, 0.8956, 0.88, 0.8654, 0.8546, 0.844, 0.8282, 0.8154, 0.6072, 0.6834, 0.6792, 0.6632, 0.6502, 0.6368, 0.6344, 0.6324, 0.6368, 0.6294, 0.6126, 0.5014, 0.3812, 0.368, 0.3292, 0.8248, 0.8338, 0.837, 0.8404, 0.8494, 0.854, 0.8604, 0.8636, 0.867, 0.8722, 0.8792, 0.8854, 0.8902, 0.8966, 0.901, 0.911, 0.922, 0.931, 0.9434, 0.9474, 0.937, 0.9256, 0.9176, 0.9056, 0.8982, 0.8932, 0.8886, 0.882, 0.8758, 0.8688, 0.8654, 0.862, 0.8582, 0.8518, 0.844, 0.8392, 0.8356, 0.8274, 0.8224, 0.0372, 0.0342, 0.0324, 0.032, 0.032, 0.0322, 0.0322, 0.0312, 0.0366, 0.0314, 0.0338, 0.0312, 0.0312, 0.0318, 0.0342, 0.0324, 0.0338, 0.033, 0.0332, 0.039, 0.0382, 0.038, 0.0354, 0.0356, 0.0362, 0.038, 0.0384, 0.0422, 0.0418, 0.0436, 0.0564, 0.0574, 0.0614, 0.0734, 0.0736, 0.067, 0.5086, 0.7356, 0.7852, 0.8268, 0.833, 0.8644, 0.9004, 0.917, 0.947, 0.9428, 0.9046, 0.8898, 0.8578, 0.8296, 0.8094, 0.7718, 0.5174, 0.4912, 0.4742, 0.4732, 0.4592, 0.273, 0.269, 0.253, 0.0678, 0.059, 0.058, 0.0558, 0.0528, 0.0474, 0.0394, 0.0376, 0.0358, 0.0354, 0.0348, 0.0336, 0.0324, 0.0346, 0.0316, 0.0338, 0.0468, 0.0362, 0.0312, 0.029, 0.0286, 0.0286, 0.029, 0.0288, 0.0406, 0.1204, 0.3072, 0.2, 0.0744, 0.0856, 0.0752, 0.2196, 0.2214, 0.6068, 0.8656, 0.9288, 0.9302, 0.9158, 0.6186, 0.5924, 0.2946, 0.2808, 0.045, 0.0414, 0.0218, 0.0218, 0.0218, 0.0216, 0.0216, 0.0216, 0.0216, 0.0212, 0.0214, 0.0216, 0.0216, 0.0212, 0.0208, 0.021, 0.021, 0.0396, 0.0214, 0.0212, 0.0216, 0.0214, 0.0218, 0.0224, 0.9456, 0.0234, 0.0252, 0.0262, 0.0416, 0.0274, 0.0282, 0.0338, 0.0332, 0.0356, 0.0514, 0.1094, 0.1128, 0.1222, 0.3332, 0.277, 0.2124, 0.0432, 0.0396, 0.0368, 0.033, 0.0332, 0.034, 0.9354, 0.0362, 0.0378, 0.0372, 0.038, 0.0386, 0.0408, 0.0382, 0.727, 0.816, 0.8952, 0.8512, 0.8058, 0.5972, 0.593, 0.5686, 0.542, 0.541, 0.242, 0.2404, 0.2374, 0.05, 0.0502, 0.0504, 0.0522, 0.053, 0.0542, 0.0528, 0.0536, 0.0548, 0.0564, 0.0576, 0.0592, 0.0614, 0.0648, 0.0704, 0.0752, 0.0878, 0.2782, 0.1072, 0.1118, 0.1178, 0.1292, 0.1452, 0.209, 0.4818], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/ABC2_membrane_4.gap.json b/pfam_gap_rates/ABC2_membrane_4.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f996de2ee593ce38456d317c8287ce0f84612a2d
--- /dev/null
+++ b/pfam_gap_rates/ABC2_membrane_4.gap.json
@@ -0,0 +1 @@
+{"family": "ABC2_membrane_4", "n_seqs": 1127, "length": 212, "gap_rates": [0.6273291925465838, 0.2937000887311446, 0.225377107364685, 0.16858917480035493, 0.15705412599822538, 0.14640638864241348, 0.1401952085181899, 0.13309671694764863, 0.11623779946761313, 0.10381543921916593, 0.09849157054125998, 0.09139307897071872, 0.13220940550133098, 0.10913930789707187, 0.0878438331854481, 0.07985803016858918, 0.07364685004436557, 0.08251996450754215, 0.064773735581189, 0.05678793256433008, 0.05235137533274179, 0.04791481810115351, 0.04791481810115351, 0.07542147293700088, 0.062111801242236024, 0.07542147293700088, 0.06388642413487133, 0.9210292812777284, 0.07542147293700088, 0.08251996450754215, 0.9396628216503993, 0.08606921029281278, 0.061224489795918366, 0.06566104702750665, 0.13398402839396628, 0.11712511091393078, 0.8624667258207631, 0.8926353149955635, 0.9139307897071872, 0.9307897071872228, 0.9485359361135759, 0.9423247559893523, 0.9245785270629991, 0.9094942324755989, 0.8828748890860693, 0.84472049689441, 0.11180124223602485, 0.13753327417923691, 0.10115350488021295, 0.11446317657497782, 0.940550133096717, 0.0709849157054126, 0.06566104702750665, 0.08518189884649512, 0.07985803016858918, 0.11180124223602485, 0.9192546583850931, 0.06566104702750665, 0.04614019520851819, 0.0354924578527063, 0.05235137533274179, 0.043478260869565216, 0.9086069210292813, 0.9361135758651287, 0.8216503992901508, 0.07187222715173026, 0.9440993788819876, 0.929902395740905, 0.0940550133096717, 0.9174800354924578, 0.8562555456965395, 0.050576752440106475, 0.029281277728482696, 0.026619343389529725, 0.06033717834960071, 0.055013309671694766, 0.05323868677905945, 0.06654835847382432, 0.9094942324755989, 0.9494232475598935, 0.8802129547471162, 0.05856255545696539, 0.022182786157941437, 0.013309671694764862, 0.009760425909494233, 0.00709849157054126, 0.00709849157054126, 0.01064773735581189, 0.024844720496894408, 0.02129547471162378, 0.013309671694764862, 0.009760425909494233, 0.008873114463176575, 0.007985803016858917, 0.00709849157054126, 0.007985803016858917, 0.006211180124223602, 0.0044365572315882874, 0.00354924578527063, 0.0044365572315882874, 0.00709849157054126, 0.005323868677905945, 0.00709849157054126, 0.006211180124223602, 0.0026619343389529724, 0.00354924578527063, 0.00354924578527063, 0.0026619343389529724, 0.001774622892635315, 0.0026619343389529724, 0.0026619343389529724, 0.02839396628216504, 0.02839396628216504, 0.015084294587400177, 0.007985803016858917, 0.007985803016858917, 0.02839396628216504, 0.00354924578527063, 0.0008873114463176575, 0.0008873114463176575, 0.0008873114463176575, 0.0008873114463176575, 0.0008873114463176575, 0.0008873114463176575, 0.0008873114463176575, 0.0008873114463176575, 0.0044365572315882874, 0.00709849157054126, 0.012422360248447204, 0.03194321206743567, 0.018633540372670808, 0.015971606033717833, 0.012422360248447204, 0.01064773735581189, 0.012422360248447204, 0.02040816326530612, 0.05235137533274179, 0.03992901508429459, 0.055013309671694766, 0.05146406388642413, 0.04791481810115351, 0.04259094942324756, 0.0354924578527063, 0.03194321206743567, 0.9432120674356699, 0.06743566992014197, 0.04791481810115351, 0.05235137533274179, 0.043478260869565216, 0.037267080745341616, 0.09316770186335403, 0.07187222715173026, 0.10381543921916593, 0.8695652173913043, 0.08251996450754215, 0.10292812777284827, 0.11978704525288376, 0.11091393078970718, 0.08163265306122448, 0.9112688553682342, 0.940550133096717, 0.9307897071872228, 0.8855368234250222, 0.10470275066548358, 0.09494232475598935, 0.09139307897071872, 0.08873114463176575, 0.08873114463176575, 0.07453416149068323, 0.10825199645075421, 0.0834072759538598, 0.0771960958296362, 0.08163265306122448, 0.05678793256433008, 0.05146406388642413, 0.055013309671694766, 0.07009760425909495, 0.06388642413487133, 0.064773735581189, 0.08251996450754215, 0.06832298136645963, 0.06566104702750665, 0.06566104702750665, 0.08695652173913043, 0.10204081632653061, 0.8225377107364685, 0.09050576752440107, 0.08074534161490683, 0.08429458740017746, 0.9006211180124224, 0.09671694764862467, 0.10736468500443656, 0.9423247559893523, 0.11712511091393078, 0.12244897959183673, 0.1313220940550133, 0.13664596273291926, 0.14551907719609583, 0.14995563442768411, 0.15350488021295475, 0.15882874889086068, 0.15971606033717836, 0.17036379769299023, 0.20319432120674358, 0.22448979591836735, 0.2484472049689441, 0.2972493345164153, 0.34960070984915703, 0.40195208518189884, 0.4835847382431233, 0.6441881100266194, 0.8145519077196096], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/ABC_tran_2.gap.json b/pfam_gap_rates/ABC_tran_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..89ff21adec6505ed58c00a31c9257ae93e37d590
--- /dev/null
+++ b/pfam_gap_rates/ABC_tran_2.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/ABM.gap.json b/pfam_gap_rates/ABM.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e5700dc7a40b82b38b159f2cde886f370247bc0c
--- /dev/null
+++ b/pfam_gap_rates/ABM.gap.json
@@ -0,0 +1 @@
+{"family": "ABM", "n_seqs": 3266, "length": 79, "gap_rates": [0.5753214941824862, 0.35762400489895896, 0.2743417023882425, 0.2170851194121249, 0.17146356399265156, 0.14911206368646662, 0.1282914880587875, 0.11420698101653398, 0.10471524800979792, 0.08971218616044091, 0.08358848744641764, 0.0762400489895897, 0.07011635027556644, 0.06582976117575015, 0.05970606246172688, 0.04929577464788732, 0.04470300061236987, 0.04133496631965707, 0.0385793018983466, 0.034292712798530314, 0.03061849357011635, 0.02510716472749541, 0.022351500306184935, 0.018677281077770974, 0.018983466013472138, 0.02204531537048377, 0.018677281077770974, 0.26546233925290874, 0.016840171463563994, 0.5208205756276791, 0.11175750153092467, 0.0052051439069197795, 0.003980404164115126, 0.0021432945499081446, 0.0021432945499081446, 0.0021432945499081446, 0.003061849357011635, 0.002449479485609308, 0.0021432945499081446, 0.002449479485609308, 0.0015309246785058174, 0.001224739742804654, 0.0052051439069197795, 0.9161053276178812, 0.9029393753827312, 0.15554194733619106, 0.04102878138395591, 0.025413349663196572, 0.003980404164115126, 0.008266993263931415, 0.00612369871402327, 0.04317207593386405, 0.015921616656460504, 0.0021432945499081446, 0.0021432945499081446, 0.002449479485609308, 0.0027556644213104714, 0.0027556644213104714, 0.003061849357011635, 0.004286589099816289, 0.00612369871402327, 0.007042253521126761, 0.007960808328230252, 0.008266993263931415, 0.028169014084507043, 0.013778322106552358, 0.022351500306184935, 0.034292712798530314, 0.04623392529087569, 0.06276791181873852, 0.08848744641763626, 0.12461726883037355, 0.1494182486221678, 0.1754439681567667, 0.20606246172688303, 0.24127372933251684, 0.3150642988364972, 0.4470300061236987, 0.6316595223515004], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/ADH_N.gap.json b/pfam_gap_rates/ADH_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..017a229dcec3da0da0c2cdf21261675372eb5215
--- /dev/null
+++ b/pfam_gap_rates/ADH_N.gap.json
@@ -0,0 +1 @@
+{"family": "ADH_N", "n_seqs": 5000, "length": 147, "gap_rates": [0.758, 0.097, 0.0402, 0.0312, 0.0282, 0.027, 0.025, 0.0238, 0.0224, 0.0222, 0.022, 0.0216, 0.0206, 0.0202, 0.0198, 0.0196, 0.0192, 0.0186, 0.0182, 0.0184, 0.018, 0.0174, 0.019, 0.4952, 0.757, 0.9044, 0.9292, 0.942, 0.9206, 0.8816, 0.7214, 0.2294, 0.0946, 0.0544, 0.0312, 0.0262, 0.022, 0.02, 0.0122, 0.0218, 0.0094, 0.0056, 0.005, 0.0054, 0.0054, 0.0046, 0.0044, 0.005, 0.0052, 0.005, 0.0052, 0.0054, 0.0184, 0.0164, 0.0236, 0.0288, 0.0396, 0.0416, 0.0216, 0.9398, 0.8994, 0.0188, 0.0162, 0.0134, 0.011, 0.0108, 0.0112, 0.0126, 0.0158, 0.0606, 0.2016, 0.2372, 0.2884, 0.3246, 0.3486, 0.86, 0.376, 0.385, 0.3926, 0.3978, 0.3942, 0.3928, 0.3934, 0.3962, 0.397, 0.3996, 0.4022, 0.4018, 0.405, 0.405, 0.4076, 0.8218, 0.8376, 0.8438, 0.8654, 0.8896, 0.8952, 0.9036, 0.9148, 0.9296, 0.9352, 0.941, 0.9314, 0.926, 0.906, 0.8994, 0.8918, 0.871, 0.8486, 0.842, 0.827, 0.817, 0.4118, 0.4464, 0.448, 0.4476, 0.4478, 0.4548, 0.462, 0.4668, 0.4442, 0.8088, 0.8428, 0.915, 0.9296, 0.8602, 0.8286, 0.7288, 0.4764, 0.4676, 0.464, 0.4394, 0.4414, 0.4432, 0.444, 0.4454, 0.4464, 0.4482, 0.4506, 0.4544, 0.4798, 0.5196, 0.5494, 0.5714, 0.6196, 0.709, 0.8824], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/ADIP.gap.json b/pfam_gap_rates/ADIP.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..7dea6076214e18cac37cbc64c6d9f3e90febaa2b
--- /dev/null
+++ b/pfam_gap_rates/ADIP.gap.json
@@ -0,0 +1 @@
+{"family": "ADIP", "n_seqs": 241, "length": 169, "gap_rates": [0.6307053941908713, 0.42738589211618255, 0.3112033195020747, 0.2572614107883817, 0.23236514522821577, 0.2074688796680498, 0.2074688796680498, 0.2033195020746888, 0.1950207468879668, 0.17842323651452283, 0.17842323651452283, 0.17427385892116182, 0.17427385892116182, 0.17427385892116182, 0.17427385892116182, 0.17012448132780084, 0.17012448132780084, 0.17012448132780084, 0.17012448132780084, 0.17842323651452283, 0.17427385892116182, 0.17012448132780084, 0.16182572614107885, 0.15767634854771784, 0.16182572614107885, 0.15767634854771784, 0.7095435684647303, 0.7219917012448133, 0.91701244813278, 0.9336099585062241, 0.941908713692946, 0.941908713692946, 0.946058091286307, 0.946058091286307, 0.946058091286307, 0.946058091286307, 0.946058091286307, 0.941908713692946, 0.941908713692946, 0.9253112033195021, 0.7593360995850622, 0.7178423236514523, 0.6846473029045643, 0.6182572614107884, 0.5892116182572614, 0.4896265560165975, 0.38589211618257263, 0.14522821576763487, 0.13278008298755187, 0.12863070539419086, 0.11203319502074689, 0.11618257261410789, 0.11203319502074689, 0.0995850622406639, 0.0995850622406639, 0.0954356846473029, 0.0954356846473029, 0.0954356846473029, 0.0954356846473029, 0.0954356846473029, 0.0912863070539419, 0.08298755186721991, 0.08713692946058091, 0.08713692946058091, 0.08713692946058091, 0.08298755186721991, 0.08298755186721991, 0.08713692946058091, 0.08713692946058091, 0.08298755186721991, 0.08298755186721991, 0.07883817427385892, 0.07883817427385892, 0.07883817427385892, 0.07883817427385892, 0.07468879668049792, 0.07053941908713693, 0.07053941908713693, 0.07053941908713693, 0.07053941908713693, 0.06639004149377593, 0.07468879668049792, 0.05394190871369295, 0.05394190871369295, 0.05394190871369295, 0.04979253112033195, 0.04979253112033195, 0.04979253112033195, 0.05394190871369295, 0.04979253112033195, 0.04979253112033195, 0.04979253112033195, 0.04979253112033195, 0.04979253112033195, 0.04564315352697095, 0.04564315352697095, 0.04149377593360996, 0.04149377593360996, 0.04149377593360996, 0.04564315352697095, 0.04564315352697095, 0.04564315352697095, 0.04564315352697095, 0.04564315352697095, 0.04564315352697095, 0.04564315352697095, 0.04564315352697095, 0.04564315352697095, 0.04979253112033195, 0.04979253112033195, 0.04979253112033195, 0.04979253112033195, 0.04564315352697095, 0.04564315352697095, 0.04564315352697095, 0.05394190871369295, 0.05394190871369295, 0.04149377593360996, 0.04149377593360996, 0.04149377593360996, 0.04149377593360996, 0.04149377593360996, 0.04149377593360996, 0.04149377593360996, 0.04149377593360996, 0.04149377593360996, 0.04149377593360996, 0.04149377593360996, 0.04149377593360996, 0.04149377593360996, 0.04149377593360996, 0.04149377593360996, 0.04149377593360996, 0.03734439834024896, 0.04149377593360996, 0.03734439834024896, 0.03734439834024896, 0.03734439834024896, 0.04149377593360996, 0.04564315352697095, 0.04149377593360996, 0.04149377593360996, 0.03734439834024896, 0.04149377593360996, 0.04979253112033195, 0.05394190871369295, 0.05394190871369295, 0.05394190871369295, 0.05394190871369295, 0.05394190871369295, 0.058091286307053944, 0.058091286307053944, 0.058091286307053944, 0.06224066390041494, 0.06639004149377593, 0.06639004149377593, 0.06639004149377593, 0.06639004149377593, 0.07053941908713693, 0.07883817427385892, 0.07883817427385892, 0.07883817427385892, 0.08298755186721991, 0.08298755186721991, 0.0995850622406639, 0.1037344398340249, 0.15352697095435686, 0.23651452282157676, 0.5020746887966805], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/AFOR_N.gap.json b/pfam_gap_rates/AFOR_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..418e84aa750d2e13292220c053bb609057ac5a31
--- /dev/null
+++ b/pfam_gap_rates/AFOR_N.gap.json
@@ -0,0 +1 @@
+{"family": "AFOR_N", "n_seqs": 851, "length": 219, "gap_rates": [0.5652173913043478, 0.20329024676850763, 0.11163337250293771, 0.0564042303172738, 0.043478260869565216, 0.04230317273795535, 0.041128084606345476, 0.03760282021151586, 0.036427732079905996, 0.03525264394829612, 0.03290246768507638, 0.03172737955346651, 0.03055229142185664, 0.03172737955346651, 0.03290246768507638, 0.03055229142185664, 0.03055229142185664, 0.03172737955346651, 0.02937720329024677, 0.08343125734430082, 0.11045828437132785, 0.0963572267920094, 0.09048178613396005, 0.19388954171562867, 0.14336075205640422, 0.0846063454759107, 0.02702702702702703, 0.02702702702702703, 0.022326674500587545, 0.022326674500587545, 0.021151586368977675, 0.021151586368977675, 0.021151586368977675, 0.0199764982373678, 0.0199764982373678, 0.0199764982373678, 0.0199764982373678, 0.021151586368977675, 0.022326674500587545, 0.04700352526439483, 0.05875440658049354, 0.06462984723854288, 0.04700352526439483, 0.04465334900117509, 0.043478260869565216, 0.041128084606345476, 0.041128084606345476, 0.03525264394829612, 0.02702702702702703, 0.024676850763807285, 0.01762632197414806, 0.01762632197414806, 0.01762632197414806, 0.01762632197414806, 0.01645123384253819, 0.01645123384253819, 0.01527614571092832, 0.01410105757931845, 0.01527614571092832, 0.01527614571092832, 0.01527614571092832, 0.01645123384253819, 0.01762632197414806, 0.01762632197414806, 0.12925969447708577, 0.023501762632197415, 0.01880141010575793, 0.03525264394829612, 0.01880141010575793, 0.01880141010575793, 0.01762632197414806, 0.01762632197414806, 0.01762632197414806, 0.01645123384253819, 0.01645123384253819, 0.01645123384253819, 0.01762632197414806, 0.01762632197414806, 0.022326674500587545, 0.03055229142185664, 0.023501762632197415, 0.01880141010575793, 0.01880141010575793, 0.01880141010575793, 0.01762632197414806, 0.01762632197414806, 0.01762632197414806, 0.01762632197414806, 0.01762632197414806, 0.01762632197414806, 0.01762632197414806, 0.04465334900117509, 0.01880141010575793, 0.01880141010575793, 0.0199764982373678, 0.01880141010575793, 0.01880141010575793, 0.022326674500587545, 0.0199764982373678, 0.0199764982373678, 0.01880141010575793, 0.01880141010575793, 0.01880141010575793, 0.021151586368977675, 0.01880141010575793, 0.0199764982373678, 0.0199764982373678, 0.0199764982373678, 0.0199764982373678, 0.0199764982373678, 0.021151586368977675, 0.022326674500587545, 0.022326674500587545, 0.022326674500587545, 0.022326674500587545, 0.021151586368977675, 0.021151586368977675, 0.021151586368977675, 0.021151586368977675, 0.8672150411280846, 0.8507638072855465, 0.023501762632197415, 0.02702702702702703, 0.022326674500587545, 0.02702702702702703, 0.023501762632197415, 0.022326674500587545, 0.022326674500587545, 0.022326674500587545, 0.022326674500587545, 0.03407755581668625, 0.03407755581668625, 0.03407755581668625, 0.03760282021151586, 0.03290246768507638, 0.02937720329024677, 0.03172737955346651, 0.02937720329024677, 0.03055229142185664, 0.03055229142185664, 0.0282021151586369, 0.0282021151586369, 0.0282021151586369, 0.0282021151586369, 0.0282021151586369, 0.0282021151586369, 0.02702702702702703, 0.02702702702702703, 0.9424206815511164, 0.9130434782608695, 0.03172737955346651, 0.10105757931844889, 0.10223266745005875, 0.04935370152761457, 0.2491186839012926, 0.8354876615746181, 0.9083431257344301, 0.936545240893067, 0.8801410105757932, 0.5135135135135135, 0.20211515863689777, 0.03290246768507638, 0.03525264394829612, 0.025851938895417155, 0.8895417156286721, 0.8754406580493537, 0.025851938895417155, 0.025851938895417155, 0.025851938895417155, 0.025851938895417155, 0.02937720329024677, 0.025851938895417155, 0.025851938895417155, 0.025851938895417155, 0.05405405405405406, 0.0282021151586369, 0.02702702702702703, 0.02702702702702703, 0.02702702702702703, 0.02702702702702703, 0.0282021151586369, 0.18801410105757932, 0.052878965922444184, 0.03407755581668625, 0.7696827262044653, 0.799059929494712, 0.9306698002350177, 0.9400705052878966, 0.8448883666274971, 0.7978848413631022, 0.7097532314923619, 0.03407755581668625, 0.03525264394829612, 0.02702702702702703, 0.9412455934195064, 0.02937720329024677, 0.03760282021151586, 0.0399529964747356, 0.0399529964747356, 0.03172737955346651, 0.025851938895417155, 0.02702702702702703, 0.02702702702702703, 0.02702702702702703, 0.02702702702702703, 0.02702702702702703, 0.02702702702702703, 0.02702702702702703, 0.02702702702702703, 0.02702702702702703, 0.02702702702702703, 0.02702702702702703, 0.02702702702702703, 0.02702702702702703, 0.0282021151586369, 0.03055229142185664, 0.057579318448883664, 0.21269095182138661, 0.6968272620446534], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/AICARFT_IMPCHas.gap.json b/pfam_gap_rates/AICARFT_IMPCHas.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..7d011b820306d08fd76cce9484e3bb41bc49525f
--- /dev/null
+++ b/pfam_gap_rates/AICARFT_IMPCHas.gap.json
@@ -0,0 +1 @@
+{"family": "AICARFT_IMPCHas", "n_seqs": 2282, "length": 372, "gap_rates": [0.2839614373356705, 0.18624014022787028, 0.18624014022787028, 0.18492550394390886, 0.18492550394390886, 0.18492550394390886, 0.18492550394390886, 0.18492550394390886, 0.18229623137598597, 0.18229623137598597, 0.18054338299737072, 0.18054338299737072, 0.18054338299737072, 0.18054338299737072, 0.1801051709027169, 0.1796669588080631, 0.1796669588080631, 0.1796669588080631, 0.1796669588080631, 0.1792287467134093, 0.17879053461875546, 0.17879053461875546, 0.1827344434706398, 0.1831726555652936, 0.18448729184925505, 0.1866783523225241, 0.6678352322524101, 0.4333917616126205, 0.1827344434706398, 0.19062226117440842, 0.18448729184925505, 0.1801051709027169, 0.1792287467134093, 0.1792287467134093, 0.17879053461875546, 0.17835232252410166, 0.17791411042944785, 0.17747589833479405, 0.1761612620508326, 0.1757230499561788, 0.17484662576687116, 0.17484662576687116, 0.17484662576687116, 0.17484662576687116, 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\ No newline at end of file
diff --git a/pfam_gap_rates/AIRS_C.gap.json b/pfam_gap_rates/AIRS_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..fefbec69814dd4473a46519a8eef02bfe3bb3d5f
--- /dev/null
+++ b/pfam_gap_rates/AIRS_C.gap.json
@@ -0,0 +1 @@
+{"family": "AIRS_C", "n_seqs": 5000, "length": 215, "gap_rates": [0.5862, 0.2302, 0.162, 0.1486, 0.1408, 0.1294, 0.1274, 0.125, 0.1212, 0.1156, 0.1064, 0.6438, 0.7292, 0.7202, 0.6336, 0.0826, 0.071, 0.0568, 0.0542, 0.0532, 0.0522, 0.053, 0.2762, 0.0624, 0.0552, 0.0646, 0.056, 0.0914, 0.0668, 0.057, 0.0568, 0.0564, 0.058, 0.067, 0.107, 0.1468, 0.4662, 0.4432, 0.708, 0.7364, 0.7978, 0.9308, 0.8514, 0.7756, 0.7234, 0.6376, 0.4262, 0.4144, 0.2836, 0.9418, 0.0886, 0.0718, 0.0574, 0.0496, 0.0322, 0.031, 0.0316, 0.0682, 0.0382, 0.0292, 0.0224, 0.0202, 0.0194, 0.0184, 0.0224, 0.0204, 0.018, 0.0204, 0.025, 0.1198, 0.7638, 0.9342, 0.5534, 0.4636, 0.0878, 0.0248, 0.009, 0.0078, 0.0076, 0.007, 0.0076, 0.0064, 0.0062, 0.0058, 0.0056, 0.1012, 0.0128, 0.0086, 0.012, 0.0092, 0.0106, 0.0072, 0.0078, 0.0082, 0.0088, 0.0204, 0.0156, 0.0162, 0.0836, 0.3316, 0.0724, 0.0476, 0.0084, 0.008, 0.008, 0.008, 0.0084, 0.0086, 0.7014, 0.9416, 0.7394, 0.688, 0.1382, 0.1436, 0.0806, 0.0644, 0.058, 0.0536, 0.0772, 0.1196, 0.2152, 0.5698, 0.5972, 0.9244, 0.9442, 0.615, 0.5832, 0.5446, 0.1458, 0.1312, 0.0784, 0.0626, 0.0558, 0.0466, 0.0458, 0.0278, 0.8766, 0.8814, 0.8906, 0.8972, 0.9034, 0.9108, 0.913, 0.914, 0.9148, 0.917, 0.9174, 0.918, 0.9196, 0.9216, 0.9304, 0.939, 0.9232, 0.9206, 0.9184, 0.918, 0.9174, 0.9152, 0.9146, 0.9134, 0.9118, 0.907, 0.8988, 0.8936, 0.8868, 0.8778, 0.8654, 0.0256, 0.026, 0.0262, 0.0262, 0.0818, 0.0348, 0.0446, 0.0306, 0.0306, 0.034, 0.035, 0.0354, 0.0364, 0.0382, 0.04, 0.7498, 0.1002, 0.0856, 0.0542, 0.0502, 0.043, 0.0436, 0.0432, 0.0446, 0.0716, 0.0982, 0.1114, 0.1146, 0.8838, 0.6018, 0.2974, 0.058, 0.0554, 0.0546, 0.0548, 0.0552, 0.0586, 0.0638, 0.0754, 0.0916, 0.122, 0.1786, 0.2898, 0.393, 0.509, 0.6072, 0.7618, 0.9076], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/ALIX_LYPXL_bnd.gap.json b/pfam_gap_rates/ALIX_LYPXL_bnd.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a5b13287471b7f08a28f8103cc6d2872c95edefb
--- /dev/null
+++ b/pfam_gap_rates/ALIX_LYPXL_bnd.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/AMP-binding_C_2.gap.json b/pfam_gap_rates/AMP-binding_C_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..25938ed221c468059fa28dd2b36bb82ad8798802
--- /dev/null
+++ b/pfam_gap_rates/AMP-binding_C_2.gap.json
@@ -0,0 +1 @@
+{"family": "AMP-binding_C_2", "n_seqs": 996, "length": 99, "gap_rates": [0.03614457831325301, 0.01606425702811245, 0.015060240963855422, 0.014056224899598393, 0.012048192771084338, 0.01104417670682731, 0.01104417670682731, 0.008032128514056224, 0.008032128514056224, 0.006024096385542169, 0.006024096385542169, 0.006024096385542169, 0.006024096385542169, 0.006024096385542169, 0.007028112449799197, 0.03614457831325301, 0.012048192771084338, 0.009036144578313253, 0.007028112449799197, 0.006024096385542169, 0.05120481927710843, 0.0050200803212851405, 0.025100401606425703, 0.004016064257028112, 0.0030120481927710845, 0.0030120481927710845, 0.0030120481927710845, 0.004016064257028112, 0.007028112449799197, 0.013052208835341365, 0.9467871485943775, 0.010040160642570281, 0.9467871485943775, 0.008032128514056224, 0.007028112449799197, 0.006024096385542169, 0.002008032128514056, 0.001004016064257028, 0.001004016064257028, 0.001004016064257028, 0.0, 0.0, 0.001004016064257028, 0.001004016064257028, 0.001004016064257028, 0.004016064257028112, 0.6174698795180723, 0.02208835341365462, 0.04317269076305221, 0.20783132530120482, 0.23694779116465864, 0.32228915662650603, 0.4036144578313253, 0.2620481927710843, 0.12550200803212852, 0.0823293172690763, 0.04618473895582329, 0.030120481927710843, 0.02108433734939759, 0.008032128514056224, 0.004016064257028112, 0.002008032128514056, 0.002008032128514056, 0.002008032128514056, 0.002008032128514056, 0.002008032128514056, 0.002008032128514056, 0.002008032128514056, 0.0030120481927710845, 0.0030120481927710845, 0.0030120481927710845, 0.0030120481927710845, 0.0030120481927710845, 0.004016064257028112, 0.0030120481927710845, 0.0030120481927710845, 0.0030120481927710845, 0.0030120481927710845, 0.0030120481927710845, 0.004016064257028112, 0.004016064257028112, 0.010040160642570281, 0.013052208835341365, 0.008032128514056224, 0.009036144578313253, 0.012048192771084338, 0.013052208835341365, 0.03413654618473896, 0.055220883534136546, 0.05923694779116466, 0.06224899598393574, 0.06325301204819277, 0.07329317269076305, 0.0783132530120482, 0.11244979919678715, 0.12751004016064257, 0.1576305220883534, 0.1636546184738956, 0.1676706827309237], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/AMPK1_CBM.gap.json b/pfam_gap_rates/AMPK1_CBM.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ed173a8e95c5680b8131e5f75102d1275e567871
--- /dev/null
+++ b/pfam_gap_rates/AMPK1_CBM.gap.json
@@ -0,0 +1 @@
+{"family": "AMPK1_CBM", "n_seqs": 1217, "length": 96, "gap_rates": [0.7313064913722268, 0.57189811010682, 0.3993426458504519, 0.3410024650780608, 0.3073130649137223, 0.294987674609696, 0.28923582580115037, 0.27198027937551356, 0.22925225965488907, 0.8660640920295809, 0.15776499589153656, 0.13557929334428923, 0.06820049301561217, 0.05258833196384552, 0.04519309778142974, 0.043549712407559574, 0.038619556285949055, 0.03779786359901397, 0.03779786359901397, 0.03451109285127362, 0.03451109285127362, 0.03451109285127362, 0.9202958093672966, 0.03368940016433854, 0.03368940016433854, 0.9457682826622843, 0.08792111750205424, 0.054231717337715694, 0.05587510271158587, 0.03451109285127362, 0.029580936729663106, 0.029580936729663106, 0.027115858668857847, 0.61873459326212, 0.8907148726376335, 0.9268693508627773, 0.7534921939194741, 0.4815119145439606, 0.02629416598192276, 0.027937551355792935, 0.025472473294987676, 0.914543960558751, 0.02218570254724733, 0.021364009860312245, 0.01972062448644207, 0.01725554642563681, 0.018077239112571898, 0.01725554642563681, 0.018077239112571898, 0.016433853738701727, 0.01725554642563681, 0.015612161051766639, 0.016433853738701727, 0.014790468364831553, 0.013968775677896467, 0.013968775677896467, 0.012325390304026294, 0.9367296631059984, 0.01314708299096138, 0.013968775677896467, 0.01314708299096138, 0.013968775677896467, 0.015612161051766639, 0.016433853738701727, 0.01972062448644207, 0.021364009860312245, 0.027115858668857847, 0.03533278553820871, 0.0419063270336894, 0.043549712407559574, 0.04683648315529992, 0.05341002465078061, 0.062448644207066556, 0.06984387838948233, 0.07723911257189811, 0.08545603944124898, 0.09367296631059983, 0.9071487263763353, 0.11503697617091208, 0.1265406737880033, 0.12982744453574363, 0.14133114215283485, 0.12900575184880855, 0.14215283483976993, 0.142974527526705, 0.14708299096138044, 0.1561216105176664, 0.17830731306491374, 0.228430566967954, 0.2908792111750205, 0.38373048479868527, 0.5760065735414954, 0.723911257189811, 0.8315529991783073, 0.8907148726376335, 0.9482333607230896], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/AMPKBI.gap.json b/pfam_gap_rates/AMPKBI.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ab70fe153ee82ff84fb9681d97a501d209576cc3
--- /dev/null
+++ b/pfam_gap_rates/AMPKBI.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/AMP_N.gap.json b/pfam_gap_rates/AMP_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..4478017db4a7326914c06999b770834be5e53874
--- /dev/null
+++ b/pfam_gap_rates/AMP_N.gap.json
@@ -0,0 +1 @@
+{"family": "AMP_N", "n_seqs": 1528, "length": 150, "gap_rates": [0.3854712041884817, 0.22709424083769633, 0.17277486910994763, 0.15575916230366493, 0.14463350785340315, 0.12761780104712042, 0.11714659685863875, 0.112565445026178, 0.10602094240837696, 0.10078534031413612, 0.09554973821989529, 0.08115183246073299, 0.7768324607329843, 0.831151832460733, 0.8835078534031413, 0.9299738219895288, 0.9181937172774869, 0.8534031413612565, 0.818717277486911, 0.7428010471204188, 0.07068062827225131, 0.32329842931937175, 0.06609947643979057, 0.03795811518324607, 0.03534031413612566, 0.03468586387434555, 0.034031413612565446, 0.032722513089005235, 0.03206806282722513, 0.030759162303664923, 0.030104712041884817, 0.031413612565445025, 0.030759162303664923, 0.032722513089005235, 0.03992146596858639, 0.03795811518324607, 0.03992146596858639, 0.04057591623036649, 0.6662303664921466, 0.03206806282722513, 0.026832460732984294, 0.025523560209424083, 0.02617801047120419, 0.024214659685863876, 0.024214659685863876, 0.01963350785340314, 0.015706806282722512, 0.0137434554973822, 0.012434554973821989, 0.012434554973821989, 0.012434554973821989, 0.011780104712041885, 0.013089005235602094, 0.012434554973821989, 0.011780104712041885, 0.011780104712041885, 0.011780104712041885, 0.011780104712041885, 0.9280104712041884, 0.9286649214659686, 0.9234293193717278, 0.01112565445026178, 0.011780104712041885, 0.011780104712041885, 0.011780104712041885, 0.011780104712041885, 0.012434554973821989, 0.012434554973821989, 0.011780104712041885, 0.3776178010471204, 0.45157068062827227, 0.8959424083769634, 0.9456806282722513, 0.9267015706806283, 0.8219895287958116, 0.46596858638743455, 0.4640052356020942, 0.36910994764397903, 0.32002617801047123, 0.04253926701570681, 0.01832460732984293, 0.013089005235602094, 0.013089005235602094, 0.012434554973821989, 0.011780104712041885, 0.010471204188481676, 0.010471204188481676, 0.010471204188481676, 0.00981675392670157, 0.9109947643979057, 0.912303664921466, 0.912303664921466, 0.912303664921466, 0.912303664921466, 0.9142670157068062, 0.912303664921466, 0.912303664921466, 0.912303664921466, 0.912303664921466, 0.9096858638743456, 0.00981675392670157, 0.008507853403141362, 0.007853403141361256, 0.00981675392670157, 0.00981675392670157, 0.010471204188481676, 0.009162303664921465, 0.00981675392670157, 0.00981675392670157, 0.00981675392670157, 0.012434554973821989, 0.012434554973821989, 0.017015706806282723, 0.015706806282722512, 0.015052356020942409, 0.016361256544502618, 0.017015706806282723, 0.016361256544502618, 0.01767015706806283, 0.01832460732984293, 0.018979057591623036, 0.020287958115183247, 0.01963350785340314, 0.01963350785340314, 0.021596858638743454, 0.025523560209424083, 0.14528795811518325, 0.032722513089005235, 0.03534031413612566, 0.03861256544502618, 0.04319371727748691, 0.04581151832460733, 0.04908376963350786, 0.058900523560209424, 0.06479057591623037, 0.07591623036649214, 0.0831151832460733, 0.10013089005235602, 0.12369109947643979, 0.1505235602094241, 0.19175392670157068, 0.29842931937172773, 0.33507853403141363, 0.39986910994764396, 0.4908376963350785, 0.5471204188481675, 0.6773560209424084, 0.93717277486911, 0.7192408376963351, 0.7905759162303665], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/APC_r.gap.json b/pfam_gap_rates/APC_r.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..3b65a23a779f83f037abe33a60ed080c4b3ba3f5
--- /dev/null
+++ b/pfam_gap_rates/APC_r.gap.json
@@ -0,0 +1 @@
+{"family": "APC_r", "n_seqs": 250, "length": 25, "gap_rates": [0.524, 0.248, 0.132, 0.112, 0.084, 0.044, 0.132, 0.924, 0.036, 0.036, 0.004, 0.0, 0.0, 0.0, 0.004, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.012, 0.012, 0.016, 0.08], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/APG5.gap.json b/pfam_gap_rates/APG5.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..bee4aeeacede569c99f80210cc4064a39db475e1
--- /dev/null
+++ b/pfam_gap_rates/APG5.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/ARD.gap.json b/pfam_gap_rates/ARD.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..7901dc80505372c36dda9db032228c3f7da190d0
--- /dev/null
+++ b/pfam_gap_rates/ARD.gap.json
@@ -0,0 +1 @@
+{"family": "ARD", "n_seqs": 623, "length": 168, "gap_rates": [0.7335473515248796, 0.5040128410914928, 0.4751203852327448, 0.45585874799357945, 0.4301765650080257, 0.4157303370786517, 0.3868378812199037, 0.36757624398073835, 0.3579454253611557, 0.5409309791332263, 0.5842696629213483, 0.33707865168539325, 0.31942215088282505, 0.3146067415730337, 0.30818619582664525, 0.3017656500802568, 0.29373996789727125, 0.2825040128410915, 0.27608346709470305, 0.2680577849117175, 0.3996789727126806, 0.37720706260032105, 0.23274478330658105, 0.22953451043338685, 0.22150882825040127, 0.21508828250401285, 0.20706260032102727, 0.20706260032102727, 0.20224719101123595, 0.20224719101123595, 0.19743178170144463, 0.18780096308186195, 0.18298555377207062, 0.17656500802568217, 0.7945425361155698, 0.18940609951845908, 0.17495987158908508, 0.1781701444622793, 0.17014446227929375, 0.15730337078651685, 0.15409309791332262, 0.15730337078651685, 0.15890850722311398, 0.16051364365971107, 0.27447833065810595, 0.24558587479935795, 0.17495987158908508, 0.15569823434991975, 0.13964686998394862, 0.1332263242375602, 0.13162118780096307, 0.12680577849117175, 0.1187800963081862, 0.11396468699839486, 0.11075441412520064, 0.1043338683788122, 0.10593900481540931, 0.10754414125200643, 0.10593900481540931, 0.10914927768860354, 0.1043338683788122, 0.10112359550561797, 0.10272873194221509, 0.1043338683788122, 0.11396468699839486, 0.1043338683788122, 0.695024077046549, 0.6998394863563403, 0.7223113964686998, 0.7287319422150883, 0.8683788121990369, 0.7271268057784912, 0.7014446227929374, 0.6966292134831461, 0.695024077046549, 0.5521669341894061, 0.2247191011235955, 0.2102728731942215, 0.11075441412520064, 0.09309791332263243, 0.10754414125200643, 0.07865168539325842, 0.06902086677367576, 0.06741573033707865, 0.06741573033707865, 0.06260032102728733, 0.06260032102728733, 0.06260032102728733, 0.05457463884430177, 0.048154093097913325, 0.0449438202247191, 0.038523274478330656, 0.038523274478330656, 0.04012841091492777, 0.038523274478330656, 0.033707865168539325, 0.028892455858747994, 0.028892455858747994, 0.028892455858747994, 0.028892455858747994, 0.028892455858747994, 0.030497592295345103, 0.030497592295345103, 0.030497592295345103, 0.030497592295345103, 0.028892455858747994, 0.027287319422150885, 0.028892455858747994, 0.028892455858747994, 0.027287319422150885, 0.028892455858747994, 0.027287319422150885, 0.030497592295345103, 0.027287319422150885, 0.028892455858747994, 0.028892455858747994, 0.028892455858747994, 0.033707865168539325, 0.9101123595505618, 0.028892455858747994, 0.028892455858747994, 0.027287319422150885, 0.024077046548956663, 0.030497592295345103, 0.028892455858747994, 0.025682182985553772, 0.20224719101123595, 0.025682182985553772, 0.024077046548956663, 0.027287319422150885, 0.027287319422150885, 0.027287319422150885, 0.027287319422150885, 0.027287319422150885, 0.028892455858747994, 0.028892455858747994, 0.028892455858747994, 0.033707865168539325, 0.033707865168539325, 0.033707865168539325, 0.033707865168539325, 0.03531300160513644, 0.03531300160513644, 0.03531300160513644, 0.03531300160513644, 0.03691813804173355, 0.04012841091492777, 0.038523274478330656, 0.04012841091492777, 0.04173354735152488, 0.051364365971107544, 0.060995184590690206, 0.0738362760834671, 0.08025682182985554, 0.08828250401284109, 0.09149277688603531, 0.10272873194221509, 0.11235955056179775, 0.11075441412520064, 0.11075441412520064, 0.11075441412520064, 0.12199036918138041, 0.12680577849117175, 0.1476725521669342, 0.17174959871589085, 0.18940609951845908, 0.20224719101123595, 0.30818619582664525], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/ART.gap.json b/pfam_gap_rates/ART.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..2a499471ea9f65a1389da50537cff9aa87a65f6c
--- /dev/null
+++ b/pfam_gap_rates/ART.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/ATE_C.gap.json b/pfam_gap_rates/ATE_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..09061bc5a9de5507150edcb7ffd4c2dbc9b7547b
--- /dev/null
+++ b/pfam_gap_rates/ATE_C.gap.json
@@ -0,0 +1 @@
+{"family": "ATE_C", "n_seqs": 809, "length": 161, "gap_rates": [0.3300370828182942, 0.14091470951792337, 0.09765142150803462, 0.0865265760197775, 0.0815822002472188, 0.08034610630407911, 0.08034610630407911, 0.07663782447466007, 0.07663782447466007, 0.0754017305315204, 0.07663782447466007, 0.07911001236093942, 0.07292954264524104, 0.07292954264524104, 0.5166872682323856, 0.49814585908529047, 0.0754017305315204, 0.0754017305315204, 0.08405438813349815, 0.09270704573547589, 0.09023485784919653, 0.14091470951792337, 0.12855377008652658, 0.07663782447466007, 0.06427688504326329, 0.07911001236093942, 0.511742892459827, 0.054388133498145856, 0.054388133498145856, 0.0519159456118665, 0.05067985166872682, 0.0519159456118665, 0.05067985166872682, 0.049443757725587144, 0.0519159456118665, 0.054388133498145856, 0.5611866501854141, 0.5871446229913473, 0.5834363411619283, 0.584672435105068, 0.5908529048207664, 0.5784919653893696, 0.7601977750309024, 0.8343634116192831, 0.9048207663782447, 0.9419035846724351, 0.9468479604449939, 0.9443757725587144, 0.9147095179233622, 0.8850432632880099, 0.796044499381953, 0.6946847960444994, 0.5636588380716935, 0.5525339925834364, 0.5364647713226205, 0.5290482076637825, 0.515451174289246, 0.4956736711990111, 0.04573547589616811, 0.04573547589616811, 0.042027194066749075, 0.04449938195302843, 0.04326328800988875, 0.0407911001236094, 0.038318912237330034, 0.042027194066749075, 0.0407911001236094, 0.8788627935723115, 0.8862793572311496, 0.9023485784919654, 0.8936959208899876, 0.8825710754017305, 0.8776266996291718, 0.04449938195302843, 0.032138442521631644, 0.02843016069221261, 0.9406674907292955, 0.8182941903584673, 0.027194066749072928, 0.027194066749072928, 0.027194066749072928, 0.02595797280593325, 0.024721878862793572, 0.024721878862793572, 0.02595797280593325, 0.027194066749072928, 0.027194066749072928, 0.027194066749072928, 0.027194066749072928, 0.027194066749072928, 0.02843016069221261, 0.029666254635352288, 0.029666254635352288, 0.029666254635352288, 0.02843016069221261, 0.029666254635352288, 0.02843016069221261, 0.027194066749072928, 0.02843016069221261, 0.02843016069221261, 0.029666254635352288, 0.029666254635352288, 0.030902348578491966, 0.054388133498145856, 0.04449938195302843, 0.9493201483312732, 0.05067985166872682, 0.02843016069221261, 0.02843016069221261, 0.02843016069221261, 0.030902348578491966, 0.030902348578491966, 0.030902348578491966, 0.032138442521631644, 0.030902348578491966, 0.032138442521631644, 0.032138442521631644, 0.030902348578491966, 0.029666254635352288, 0.029666254635352288, 0.029666254635352288, 0.032138442521631644, 0.030902348578491966, 0.030902348578491966, 0.7391841779975278, 0.7453646477132262, 0.9097651421508035, 0.7453646477132262, 0.7404202719406675, 0.7354758961681088, 0.030902348578491966, 0.030902348578491966, 0.029666254635352288, 0.029666254635352288, 0.02843016069221261, 0.02843016069221261, 0.02843016069221261, 0.02843016069221261, 0.030902348578491966, 0.03337453646477132, 0.034610630407911, 0.034610630407911, 0.037082818294190356, 0.037082818294190356, 0.038318912237330034, 0.037082818294190356, 0.037082818294190356, 0.037082818294190356, 0.037082818294190356, 0.038318912237330034, 0.038318912237330034, 0.04573547589616811, 0.049443757725587144, 0.054388133498145856, 0.05562422744128554, 0.07292954264524104, 0.07911001236093942, 0.0815822002472188, 0.10506798516687268, 0.22249690976514216, 0.788627935723115], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/ATE_N.gap.json b/pfam_gap_rates/ATE_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a0162019129586517840d5ba5d3061445bf683a8
--- /dev/null
+++ b/pfam_gap_rates/ATE_N.gap.json
@@ -0,0 +1 @@
+{"family": "ATE_N", "n_seqs": 732, "length": 81, "gap_rates": [0.5204918032786885, 0.1448087431693989, 0.11748633879781421, 0.11748633879781421, 0.11748633879781421, 0.11748633879781421, 0.11748633879781421, 0.11748633879781421, 0.11748633879781421, 0.11748633879781421, 0.11748633879781421, 0.12021857923497267, 0.12158469945355191, 0.22131147540983606, 0.3442622950819672, 0.35382513661202186, 0.35655737704918034, 0.35792349726775957, 0.3743169398907104, 0.37841530054644806, 0.3907103825136612, 0.49043715846994534, 0.7185792349726776, 0.6857923497267759, 0.6516393442622951, 0.6325136612021858, 0.6229508196721312, 0.5983606557377049, 0.5765027322404371, 0.5546448087431693, 0.4576502732240437, 0.045081967213114756, 0.040983606557377046, 0.036885245901639344, 0.03415300546448088, 0.028688524590163935, 0.0273224043715847, 0.0273224043715847, 0.02459016393442623, 0.01912568306010929, 0.01912568306010929, 0.017759562841530054, 0.017759562841530054, 0.017759562841530054, 0.01912568306010929, 0.01912568306010929, 0.017759562841530054, 0.01639344262295082, 0.01639344262295082, 0.01639344262295082, 0.01366120218579235, 0.015027322404371584, 0.01366120218579235, 0.01366120218579235, 0.01366120218579235, 0.009562841530054645, 0.6530054644808743, 0.006830601092896175, 0.006830601092896175, 0.006830601092896175, 0.006830601092896175, 0.00546448087431694, 0.006830601092896175, 0.006830601092896175, 0.006830601092896175, 0.006830601092896175, 0.006830601092896175, 0.009562841530054645, 0.012295081967213115, 0.01366120218579235, 0.01639344262295082, 0.017759562841530054, 0.01912568306010929, 0.01912568306010929, 0.020491803278688523, 0.020491803278688523, 0.02185792349726776, 0.023224043715846996, 0.028688524590163935, 0.05874316939890711, 0.10109289617486339], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/ATG101.gap.json b/pfam_gap_rates/ATG101.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..dfe199ec2ee82de1fc3f57731e0ca3394430abe5
--- /dev/null
+++ b/pfam_gap_rates/ATG101.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/ATG2_CAD.gap.json b/pfam_gap_rates/ATG2_CAD.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..62c4e411b193939f12bff7197f7bf8b2adb3b89d
--- /dev/null
+++ b/pfam_gap_rates/ATG2_CAD.gap.json
@@ -0,0 +1 @@
+{"family": "ATG2_CAD", "n_seqs": 201, "length": 187, "gap_rates": [0.7810945273631841, 0.39303482587064675, 0.26865671641791045, 0.208955223880597, 0.208955223880597, 0.208955223880597, 0.19402985074626866, 0.19402985074626866, 0.19402985074626866, 0.19402985074626866, 0.1890547263681592, 0.1890547263681592, 0.1691542288557214, 0.1691542288557214, 0.15920398009950248, 0.14925373134328357, 0.14925373134328357, 0.14427860696517414, 0.14427860696517414, 0.13930348258706468, 0.13930348258706468, 0.13930348258706468, 0.13930348258706468, 0.13930348258706468, 0.13930348258706468, 0.13930348258706468, 0.12935323383084577, 0.10945273631840796, 0.10945273631840796, 0.10945273631840796, 0.0845771144278607, 0.0845771144278607, 0.07960199004975124, 0.10945273631840796, 0.12935323383084577, 0.21890547263681592, 0.5671641791044776, 0.09950248756218906, 0.09950248756218906, 0.09950248756218906, 0.07960199004975124, 0.06965174129353234, 0.06965174129353234, 0.06467661691542288, 0.06965174129353234, 0.06965174129353234, 0.06965174129353234, 0.06467661691542288, 0.06467661691542288, 0.06467661691542288, 0.06467661691542288, 0.05970149253731343, 0.05970149253731343, 0.05970149253731343, 0.05970149253731343, 0.05970149253731343, 0.05970149253731343, 0.05970149253731343, 0.9154228855721394, 0.29850746268656714, 0.31840796019900497, 0.3034825870646766, 0.47761194029850745, 0.5771144278606966, 0.7761194029850746, 0.8656716417910447, 0.9253731343283582, 0.9203980099502488, 0.845771144278607, 0.6517412935323383, 0.527363184079602, 0.4129353233830846, 0.31343283582089554, 0.6368159203980099, 0.6716417910447762, 0.6467661691542289, 0.681592039800995, 0.681592039800995, 0.20398009950248755, 0.4427860696517413, 0.5223880597014925, 0.6567164179104478, 0.7263681592039801, 0.8308457711442786, 0.9154228855721394, 0.9253731343283582, 0.9402985074626866, 0.9154228855721394, 0.900497512437811, 0.7860696517412935, 0.681592039800995, 0.5671641791044776, 0.4975124378109453, 0.42786069651741293, 0.13432835820895522, 0.03482587064676617, 0.024875621890547265, 0.029850746268656716, 0.029850746268656716, 0.03482587064676617, 0.03482587064676617, 0.024875621890547265, 0.024875621890547265, 0.029850746268656716, 0.014925373134328358, 0.009950248756218905, 0.009950248756218905, 0.009950248756218905, 0.009950248756218905, 0.009950248756218905, 0.009950248756218905, 0.009950248756218905, 0.009950248756218905, 0.009950248756218905, 0.009950248756218905, 0.009950248756218905, 0.009950248756218905, 0.009950248756218905, 0.009950248756218905, 0.014925373134328358, 0.009950248756218905, 0.009950248756218905, 0.009950248756218905, 0.736318407960199, 0.7711442786069652, 0.9203980099502488, 0.945273631840796, 0.945273631840796, 0.945273631840796, 0.945273631840796, 0.945273631840796, 0.945273631840796, 0.9303482587064676, 0.9154228855721394, 0.7512437810945274, 0.6567164179104478, 0.36318407960199006, 0.2736318407960199, 0.8606965174129353, 0.13930348258706468, 0.11940298507462686, 0.10945273631840796, 0.01990049751243781, 0.009950248756218905, 0.009950248756218905, 0.009950248756218905, 0.014925373134328358, 0.009950248756218905, 0.009950248756218905, 0.009950248756218905, 0.004975124378109453, 0.004975124378109453, 0.004975124378109453, 0.004975124378109453, 0.004975124378109453, 0.004975124378109453, 0.004975124378109453, 0.004975124378109453, 0.004975124378109453, 0.004975124378109453, 0.004975124378109453, 0.004975124378109453, 0.004975124378109453, 0.004975124378109453, 0.004975124378109453, 0.009950248756218905, 0.009950248756218905, 0.009950248756218905, 0.009950248756218905, 0.03980099502487562, 0.12935323383084577, 0.1791044776119403, 0.23383084577114427, 0.27860696517412936, 0.31840796019900497, 0.32338308457711445, 0.6666666666666666, 0.43781094527363185, 0.44776119402985076, 0.6218905472636815, 0.5422885572139303, 0.5522388059701493, 0.5522388059701493, 0.572139303482587, 0.582089552238806, 0.5870646766169154, 0.6467661691542289], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/ATP-grasp_4.gap.json b/pfam_gap_rates/ATP-grasp_4.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ec0057f163eb050f2b868d250c05fa31efa0f5f9
--- /dev/null
+++ b/pfam_gap_rates/ATP-grasp_4.gap.json
@@ -0,0 +1 @@
+{"family": "ATP-grasp_4", "n_seqs": 735, "length": 164, "gap_rates": [0.8693877551020408, 0.32789115646258504, 0.18775510204081633, 0.1306122448979592, 0.0653061224489796, 0.05714285714285714, 0.05714285714285714, 0.05714285714285714, 0.055782312925170066, 0.055782312925170066, 0.055782312925170066, 0.055782312925170066, 0.05442176870748299, 0.05442176870748299, 0.05442176870748299, 0.05442176870748299, 0.05442176870748299, 0.05442176870748299, 0.055782312925170066, 0.05442176870748299, 0.05442176870748299, 0.05442176870748299, 0.055782312925170066, 0.05714285714285714, 0.058503401360544216, 0.05986394557823129, 0.05986394557823129, 0.05714285714285714, 0.05714285714285714, 0.10612244897959183, 0.09795918367346938, 0.10068027210884353, 0.09387755102040816, 0.08707482993197278, 0.08571428571428572, 0.1945578231292517, 0.2217687074829932, 0.5170068027210885, 0.6149659863945578, 0.563265306122449, 0.5428571428571428, 0.5020408163265306, 0.45714285714285713, 0.4448979591836735, 0.37142857142857144, 0.32108843537414966, 0.4217687074829932, 0.45034013605442175, 0.45850340136054424, 0.36462585034013606, 0.27755102040816326, 0.9469387755102041, 0.10612244897959183, 0.04897959183673469, 0.021768707482993196, 0.014965986394557823, 0.0163265306122449, 0.00816326530612245, 0.005442176870748299, 0.005442176870748299, 0.004081632653061225, 0.005442176870748299, 0.005442176870748299, 0.005442176870748299, 0.004081632653061225, 0.005442176870748299, 0.005442176870748299, 0.004081632653061225, 0.004081632653061225, 0.005442176870748299, 0.012244897959183673, 0.006802721088435374, 0.010884353741496598, 0.7306122448979592, 0.02585034013605442, 0.01904761904761905, 0.09251700680272108, 0.02312925170068027, 0.02312925170068027, 0.014965986394557823, 0.00816326530612245, 0.006802721088435374, 0.010884353741496598, 0.010884353741496598, 0.024489795918367346, 0.08027210884353742, 0.034013605442176874, 0.0326530612244898, 0.02857142857142857, 0.02312925170068027, 0.024489795918367346, 0.0326530612244898, 0.03537414965986395, 0.04353741496598639, 0.9469387755102041, 0.9006802721088435, 0.0380952380952381, 0.08843537414965986, 0.055782312925170066, 0.03945578231292517, 0.0380952380952381, 0.9455782312925171, 0.0380952380952381, 0.034013605442176874, 0.034013605442176874, 0.029931972789115645, 0.034013605442176874, 0.04217687074829932, 0.05714285714285714, 0.10748299319727891, 0.06802721088435375, 0.05442176870748299, 0.044897959183673466, 0.02857142857142857, 0.024489795918367346, 0.021768707482993196, 0.02040816326530612, 0.02040816326530612, 0.02040816326530612, 0.02040816326530612, 0.02312925170068027, 0.021768707482993196, 0.02312925170068027, 0.02312925170068027, 0.02312925170068027, 0.03537414965986395, 0.02312925170068027, 0.02312925170068027, 0.021768707482993196, 0.02312925170068027, 0.02312925170068027, 0.02312925170068027, 0.021768707482993196, 0.021768707482993196, 0.021768707482993196, 0.02312925170068027, 0.024489795918367346, 0.02312925170068027, 0.024489795918367346, 0.024489795918367346, 0.02857142857142857, 0.029931972789115645, 0.04217687074829932, 0.10476190476190476, 0.12380952380952381, 0.9115646258503401, 0.16326530612244897, 0.09795918367346938, 0.09115646258503401, 0.36054421768707484, 0.1360544217687075, 0.09115646258503401, 0.09931972789115646, 0.14965986394557823, 0.12108843537414966, 0.4557823129251701, 0.16870748299319727, 0.19863945578231293, 0.2217687074829932, 0.2761904761904762, 0.4217687074829932, 0.6517006802721088, 0.7904761904761904, 0.8843537414965986], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/ATP-synt_10.gap.json b/pfam_gap_rates/ATP-synt_10.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..771f970ba99a194ae03fa0357fa6f36db0811c63
--- /dev/null
+++ b/pfam_gap_rates/ATP-synt_10.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/ATP-synt_C.gap.json b/pfam_gap_rates/ATP-synt_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..edfd6cfc9a0a46ae662adc14d9868db27ae0cb3d
--- /dev/null
+++ b/pfam_gap_rates/ATP-synt_C.gap.json
@@ -0,0 +1 @@
+{"family": "ATP-synt_C", "n_seqs": 5000, "length": 64, "gap_rates": [0.3068, 0.1282, 0.0798, 0.0624, 0.0496, 0.0388, 0.0238, 0.179, 0.0216, 0.0194, 0.0168, 0.0118, 0.0148, 0.0098, 0.009, 0.0076, 0.006, 0.0054, 0.005, 0.0048, 0.0046, 0.0044, 0.004, 0.004, 0.0042, 0.0038, 0.0032, 0.0038, 0.0034, 0.0026, 0.0024, 0.0034, 0.003, 0.54, 0.5422, 0.5402, 0.5386, 0.0036, 0.003, 0.0032, 0.0034, 0.0036, 0.0038, 0.004, 0.0044, 0.0058, 0.0062, 0.0062, 0.0064, 0.0068, 0.0074, 0.0078, 0.009, 0.009, 0.0112, 0.0134, 0.0154, 0.0182, 0.0224, 0.0304, 0.0404, 0.049, 0.0808, 0.3392], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/ATP_bind_3.gap.json b/pfam_gap_rates/ATP_bind_3.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..238585df05a88781806659728f8fc74bcb0d6e96
--- /dev/null
+++ b/pfam_gap_rates/ATP_bind_3.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/ATP_synt_H.gap.json b/pfam_gap_rates/ATP_synt_H.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..9a5c434b31040e8c9a9f5ad8298d931a9f9c59cd
--- /dev/null
+++ b/pfam_gap_rates/ATP_synt_H.gap.json
@@ -0,0 +1 @@
+{"family": "ATP_synt_H", "n_seqs": 289, "length": 72, "gap_rates": [0.7197231833910035, 0.17993079584775087, 0.11418685121107267, 0.0657439446366782, 0.06228373702422145, 0.05190311418685121, 0.04844290657439446, 0.04152249134948097, 0.04152249134948097, 0.03806228373702422, 0.03806228373702422, 0.03806228373702422, 0.03460207612456748, 0.03460207612456748, 0.05536332179930796, 0.03460207612456748, 0.03806228373702422, 0.7993079584775087, 0.8269896193771626, 0.8096885813148789, 0.7854671280276817, 0.04152249134948097, 0.04152249134948097, 0.03460207612456748, 0.04152249134948097, 0.05190311418685121, 0.05536332179930796, 0.8927335640138409, 0.9377162629757786, 0.9446366782006921, 0.916955017301038, 0.8650519031141869, 0.03806228373702422, 0.031141868512110725, 0.031141868512110725, 0.02422145328719723, 0.8166089965397924, 0.01730103806228374, 0.020761245674740483, 0.020761245674740483, 0.020761245674740483, 0.01384083044982699, 0.01384083044982699, 0.010380622837370242, 0.010380622837370242, 0.010380622837370242, 0.010380622837370242, 0.010380622837370242, 0.010380622837370242, 0.010380622837370242, 0.010380622837370242, 0.010380622837370242, 0.0, 0.006920415224913495, 0.006920415224913495, 0.01730103806228374, 0.01730103806228374, 0.01730103806228374, 0.01730103806228374, 0.01730103806228374, 0.020761245674740483, 0.020761245674740483, 0.020761245674740483, 0.020761245674740483, 0.020761245674740483, 0.03460207612456748, 0.04152249134948097, 0.05190311418685121, 0.05536332179930796, 0.08996539792387544, 0.356401384083045, 0.8823529411764706], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/AXE1.gap.json b/pfam_gap_rates/AXE1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f5927e13beb9f8f33a89b343b21995face2399d0
--- /dev/null
+++ b/pfam_gap_rates/AXE1.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/AbrB-like.gap.json b/pfam_gap_rates/AbrB-like.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a5b6f094217d9355333b60a39e0ecc0bf24d3fa5
--- /dev/null
+++ b/pfam_gap_rates/AbrB-like.gap.json
@@ -0,0 +1 @@
+{"family": "AbrB-like", "n_seqs": 138, "length": 72, "gap_rates": [0.057971014492753624, 0.007246376811594203, 0.007246376811594203, 0.007246376811594203, 0.007246376811594203, 0.007246376811594203, 0.007246376811594203, 0.007246376811594203, 0.007246376811594203, 0.007246376811594203, 0.007246376811594203, 0.007246376811594203, 0.007246376811594203, 0.007246376811594203, 0.007246376811594203, 0.007246376811594203, 0.007246376811594203, 0.7608695652173914, 0.47101449275362317, 0.927536231884058, 0.9057971014492754, 0.10144927536231885, 0.036231884057971016, 0.007246376811594203, 0.007246376811594203, 0.007246376811594203, 0.007246376811594203, 0.007246376811594203, 0.007246376811594203, 0.007246376811594203, 0.007246376811594203, 0.007246376811594203, 0.007246376811594203, 0.007246376811594203, 0.007246376811594203, 0.007246376811594203, 0.007246376811594203, 0.007246376811594203, 0.007246376811594203, 0.007246376811594203, 0.007246376811594203, 0.007246376811594203, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.014492753623188406, 0.021739130434782608, 0.036231884057971016, 0.050724637681159424, 0.050724637681159424, 0.050724637681159424], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Acetyltransf_13.gap.json b/pfam_gap_rates/Acetyltransf_13.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..75009f14ade36ccf5d6de0642942cec14c75c050
--- /dev/null
+++ b/pfam_gap_rates/Acetyltransf_13.gap.json
@@ -0,0 +1 @@
+{"family": "Acetyltransf_13", "n_seqs": 269, "length": 72, "gap_rates": [0.6914498141263941, 0.30855018587360594, 0.23048327137546468, 0.06319702602230483, 0.01858736059479554, 0.01858736059479554, 0.01858736059479554, 0.01486988847583643, 0.01486988847583643, 0.01486988847583643, 0.01486988847583643, 0.01486988847583643, 0.01486988847583643, 0.01486988847583643, 0.01486988847583643, 0.01486988847583643, 0.011152416356877323, 0.011152416356877323, 0.011152416356877323, 0.011152416356877323, 0.011152416356877323, 0.011152416356877323, 0.01486988847583643, 0.01486988847583643, 0.01486988847583643, 0.01486988847583643, 0.01486988847583643, 0.01486988847583643, 0.011152416356877323, 0.01486988847583643, 0.01486988847583643, 0.01858736059479554, 0.01858736059479554, 0.01858736059479554, 0.01486988847583643, 0.022304832713754646, 0.022304832713754646, 0.022304832713754646, 0.022304832713754646, 0.895910780669145, 0.8921933085501859, 0.01858736059479554, 0.022304832713754646, 0.026022304832713755, 0.026022304832713755, 0.026022304832713755, 0.022304832713754646, 0.022304832713754646, 0.026022304832713755, 0.026022304832713755, 0.02973977695167286, 0.02973977695167286, 0.02973977695167286, 0.03345724907063197, 0.02973977695167286, 0.02973977695167286, 0.02973977695167286, 0.02973977695167286, 0.02973977695167286, 0.02973977695167286, 0.02973977695167286, 0.03345724907063197, 0.03345724907063197, 0.03717472118959108, 0.07806691449814127, 0.2342007434944238, 0.895910780669145, 0.25650557620817843, 0.2342007434944238, 0.23048327137546468, 0.24535315985130113, 0.27137546468401486], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Acetyltransf_8.gap.json b/pfam_gap_rates/Acetyltransf_8.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..fd47cdee7a662c6a35f08e9d8ba7814541e19ba2
--- /dev/null
+++ b/pfam_gap_rates/Acetyltransf_8.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Acid_PPase.gap.json b/pfam_gap_rates/Acid_PPase.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..743e358b8319f1b556e1dd7a9afc18f378abf744
--- /dev/null
+++ b/pfam_gap_rates/Acid_PPase.gap.json
@@ -0,0 +1 @@
+{"family": "Acid_PPase", "n_seqs": 319, "length": 212, "gap_rates": [0.7523510971786834, 0.3573667711598746, 0.2946708463949843, 0.26332288401253917, 0.25705329153605017, 0.25391849529780564, 0.25391849529780564, 0.25391849529780564, 0.25391849529780564, 0.25391849529780564, 0.2476489028213166, 0.23824451410658307, 0.23197492163009403, 0.22884012539184953, 0.22884012539184953, 0.22884012539184953, 0.22570532915360503, 0.22884012539184953, 0.2225705329153605, 0.219435736677116, 0.2225705329153605, 0.22884012539184953, 0.9341692789968652, 0.9216300940438872, 0.25705329153605017, 0.2946708463949843, 0.3072100313479624, 0.3166144200626959, 0.31974921630094044, 0.30407523510971785, 0.3072100313479624, 0.3103448275862069, 0.30094043887147337, 0.30407523510971785, 0.2946708463949843, 0.5454545454545454, 0.8463949843260188, 0.8934169278996865, 0.9216300940438872, 0.9310344827586207, 0.9184952978056427, 0.8808777429467085, 0.7398119122257053, 0.34796238244514105, 0.3166144200626959, 0.30407523510971785, 0.31347962382445144, 0.29780564263322884, 0.2884012539184953, 0.28213166144200624, 0.25391849529780564, 0.23824451410658307, 0.23197492163009403, 0.1755485893416928, 0.15673981191222572, 0.15673981191222572, 0.1536050156739812, 0.1536050156739812, 0.1536050156739812, 0.15047021943573669, 0.15047021943573669, 0.15047021943573669, 0.15047021943573669, 0.15047021943573669, 0.14733542319749215, 0.1536050156739812, 0.15047021943573669, 0.14420062695924765, 0.7836990595611285, 0.8495297805642633, 0.9404388714733543, 0.8025078369905956, 0.7304075235109718, 0.13166144200626959, 0.12852664576802508, 0.12852664576802508, 0.12852664576802508, 0.12852664576802508, 0.12539184952978055, 0.12539184952978055, 0.12539184952978055, 0.12539184952978055, 0.12539184952978055, 0.13793103448275862, 0.13166144200626959, 0.12539184952978055, 0.12852664576802508, 0.12852664576802508, 0.12852664576802508, 0.12539184952978055, 0.12852664576802508, 0.12852664576802508, 0.12539184952978055, 0.12225705329153605, 0.12225705329153605, 0.12225705329153605, 0.12852664576802508, 0.12852664576802508, 0.12852664576802508, 0.12852664576802508, 0.7053291536050157, 0.7586206896551724, 0.8213166144200627, 0.8620689655172413, 0.9122257053291536, 0.9184952978056427, 0.9310344827586207, 0.9404388714733543, 0.9435736677115988, 0.9310344827586207, 0.9184952978056427, 0.9184952978056427, 0.877742946708464, 0.8369905956112853, 0.8087774294670846, 0.7335423197492164, 0.6959247648902821, 0.6426332288401254, 0.5956112852664577, 0.5768025078369906, 0.5642633228840125, 0.5015673981191222, 0.45454545454545453, 0.45454545454545453, 0.45454545454545453, 0.45768025078369906, 0.45454545454545453, 0.1536050156739812, 0.1536050156739812, 0.15047021943573669, 0.14106583072100312, 0.13793103448275862, 0.8213166144200627, 0.13166144200626959, 0.12852664576802508, 0.13166144200626959, 0.13166144200626959, 0.13166144200626959, 0.9247648902821317, 0.9184952978056427, 0.12225705329153605, 0.9153605015673981, 0.9028213166144201, 0.11912225705329153, 0.11285266457680251, 0.11285266457680251, 0.11285266457680251, 0.11285266457680251, 0.11285266457680251, 0.11285266457680251, 0.11598746081504702, 0.11912225705329153, 0.11912225705329153, 0.12225705329153605, 0.9153605015673981, 0.9216300940438872, 0.9216300940438872, 0.9153605015673981, 0.12225705329153605, 0.12539184952978055, 0.12539184952978055, 0.12539184952978055, 0.12539184952978055, 0.12539184952978055, 0.12539184952978055, 0.12539184952978055, 0.12225705329153605, 0.12225705329153605, 0.12225705329153605, 0.12225705329153605, 0.12225705329153605, 0.12225705329153605, 0.12539184952978055, 0.12852664576802508, 0.12852664576802508, 0.13479623824451412, 0.13479623824451412, 0.13166144200626959, 0.13479623824451412, 0.14420062695924765, 0.14733542319749215, 0.44200626959247646, 0.9498432601880877, 0.1536050156739812, 0.1536050156739812, 0.16614420062695925, 0.16614420062695925, 0.1724137931034483, 0.1724137931034483, 0.1755485893416928, 0.1755485893416928, 0.1755485893416928, 0.1755485893416928, 0.9028213166144201, 0.8746081504702194, 0.1786833855799373, 0.1786833855799373, 0.18181818181818182, 0.18495297805642633, 0.18495297805642633, 0.18808777429467086, 0.18808777429467086, 0.19122257053291536, 0.19122257053291536, 0.2006269592476489, 0.21003134796238246, 0.219435736677116, 0.22884012539184953, 0.2413793103448276, 0.26959247648902823, 0.3667711598746082, 0.7962382445141066], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/AcylCoA_DH_N.gap.json b/pfam_gap_rates/AcylCoA_DH_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..0fb1a4950b4e88ac064f01c735df22adbc0e3bad
--- /dev/null
+++ b/pfam_gap_rates/AcylCoA_DH_N.gap.json
@@ -0,0 +1 @@
+{"family": "AcylCoA_DH_N", "n_seqs": 845, "length": 33, "gap_rates": [0.450887573964497, 0.19053254437869824, 0.15739644970414202, 0.11597633136094675, 0.07692307692307693, 0.05325443786982249, 0.033136094674556214, 0.03076923076923077, 0.008284023668639054, 0.001183431952662722, 0.0, 0.0, 0.0, 0.001183431952662722, 0.001183431952662722, 0.0, 0.0, 0.002366863905325444, 0.0035502958579881655, 0.002366863905325444, 0.0035502958579881655, 0.7349112426035503, 0.06153846153846154, 0.01301775147928994, 0.02485207100591716, 0.0378698224852071, 0.07455621301775148, 0.06390532544378698, 0.07337278106508875, 0.08875739644970414, 0.11242603550295859, 0.178698224852071, 0.30177514792899407], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Acyl_transf_3.gap.json b/pfam_gap_rates/Acyl_transf_3.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..cea3a93dd211a3223bddb353dc709c2ffda520b9
--- /dev/null
+++ b/pfam_gap_rates/Acyl_transf_3.gap.json
@@ -0,0 +1 @@
+{"family": "Acyl_transf_3", "n_seqs": 5000, "length": 455, "gap_rates": [0.53, 0.2882, 0.171, 0.1468, 0.1138, 0.0972, 0.0934, 0.0828, 0.0786, 0.0766, 0.0712, 0.0692, 0.066, 0.065, 0.0646, 0.0634, 0.0642, 0.0634, 0.0634, 0.0638, 0.0638, 0.8826, 0.9424, 0.9144, 0.8286, 0.0868, 0.1146, 0.1354, 0.1972, 0.2864, 0.2826, 0.2896, 0.2918, 0.2912, 0.3274, 0.3646, 0.3724, 0.4064, 0.4456, 0.4848, 0.5086, 0.5506, 0.614, 0.63, 0.6346, 0.7468, 0.82, 0.9074, 0.9454, 0.925, 0.8676, 0.7856, 0.71, 0.5736, 0.1162, 0.0554, 0.0444, 0.0426, 0.041, 0.0376, 0.0348, 0.034, 0.0338, 0.0324, 0.0324, 0.0318, 0.0318, 0.0328, 0.0318, 0.0302, 0.0302, 0.0304, 0.1736, 0.4332, 0.4982, 0.658, 0.8538, 0.8846, 0.9364, 0.8702, 0.805, 0.5652, 0.4602, 0.3832, 0.2872, 0.1268, 0.1124, 0.0784, 0.0576, 0.0544, 0.0454, 0.039, 0.0338, 0.0302, 0.0302, 0.0302, 0.031, 0.0318, 0.0318, 0.0322, 0.032, 0.035, 0.0344, 0.0336, 0.0376, 0.8194, 0.9052, 0.847, 0.7774, 0.0358, 0.0406, 0.0362, 0.0354, 0.0338, 0.0304, 0.0286, 0.0292, 0.0294, 0.032, 0.0316, 0.0306, 0.031, 0.0314, 0.033, 0.0326, 0.0522, 0.0448, 0.0378, 0.036, 0.0354, 0.0362, 0.0362, 0.0592, 0.0452, 0.0438, 0.0424, 0.0416, 0.0418, 0.0484, 0.0568, 0.0692, 0.4532, 0.4608, 0.4126, 0.4806, 0.5334, 0.6144, 0.6732, 0.7506, 0.8672, 0.904, 0.9318, 0.9462, 0.9188, 0.8902, 0.8142, 0.7072, 0.6464, 0.5832, 0.5032, 0.4594, 0.3558, 0.3222, 0.2942, 0.267, 0.251, 0.2142, 0.1816, 0.1618, 0.1412, 0.1152, 0.0896, 0.079, 0.0658, 0.0576, 0.041, 0.0316, 0.0254, 0.0246, 0.0244, 0.0244, 0.024, 0.0238, 0.0244, 0.0246, 0.0248, 0.0248, 0.025, 0.0256, 0.043, 0.0682, 0.0646, 0.0736, 0.796, 0.8632, 0.9096, 0.9298, 0.9434, 0.9194, 0.8976, 0.8278, 0.7522, 0.1054, 0.0878, 0.0664, 0.0582, 0.0516, 0.0456, 0.0422, 0.0376, 0.0374, 0.0382, 0.0394, 0.0384, 0.0368, 0.0352, 0.0358, 0.0362, 0.035, 0.0362, 0.0378, 0.0362, 0.0376, 0.0378, 0.036, 0.0376, 0.0354, 0.037, 0.038, 0.0382, 0.0516, 0.0454, 0.068, 0.9356, 0.9488, 0.9436, 0.9236, 0.1888, 0.2042, 0.1978, 0.2092, 0.2138, 0.217, 0.236, 0.2266, 0.2534, 0.2778, 0.3576, 0.3606, 0.3858, 0.4436, 0.5344, 0.5786, 0.5408, 0.651, 0.7346, 0.7956, 0.8406, 0.8758, 0.9004, 0.9222, 0.9466, 0.9368, 0.9122, 0.8892, 0.8572, 0.821, 0.7712, 0.7088, 0.5966, 0.0618, 0.0528, 0.0458, 0.0432, 0.0428, 0.043, 0.043, 0.0428, 0.0432, 0.044, 0.0448, 0.0474, 0.0472, 0.047, 0.0484, 0.0478, 0.049, 0.0856, 0.1066, 0.0942, 0.1764, 0.143, 0.8196, 0.8522, 0.883, 0.9054, 0.9288, 0.9456, 0.9372, 0.9178, 0.8946, 0.8712, 0.8364, 0.8014, 0.1212, 0.1076, 0.0906, 0.0802, 0.07, 0.0638, 0.058, 0.058, 0.0544, 0.0536, 0.0522, 0.0532, 0.053, 0.0536, 0.0526, 0.0538, 0.0548, 0.0562, 0.056, 0.0586, 0.0628, 0.0666, 0.0772, 0.0948, 0.6194, 0.6078, 0.7322, 0.7834, 0.8258, 0.868, 0.9034, 0.932, 0.944, 0.9184, 0.8882, 0.8456, 0.804, 0.7586, 0.7068, 0.56, 0.5012, 0.455, 0.4068, 0.3544, 0.3128, 0.2542, 0.2074, 0.1734, 0.1464, 0.1276, 0.1122, 0.0936, 0.0722, 0.0658, 0.0612, 0.0594, 0.0564, 0.0564, 0.0562, 0.0564, 0.0564, 0.0566, 0.0562, 0.056, 0.057, 0.0574, 0.0594, 0.0592, 0.0602, 0.0612, 0.0612, 0.0644, 0.0696, 0.0814, 0.2066, 0.2042, 0.1668, 0.4734, 0.6938, 0.8558, 0.9454, 0.8972, 0.766, 0.5488, 0.4018, 0.1822, 0.0838, 0.0704, 0.0648, 0.0644, 0.0614, 0.0576, 0.0576, 0.0576, 0.0582, 0.0586, 0.0594, 0.0594, 0.0594, 0.0604, 0.06, 0.075, 0.0696, 0.0686, 0.0654, 0.0668, 0.0714, 0.0754, 0.0764, 0.081, 0.0824, 0.0846, 0.0872, 0.0904, 0.093, 0.9344, 0.9448, 0.913, 0.3648, 0.4078, 0.317, 0.6488, 0.8016, 0.8832, 0.9358, 0.9152, 0.8462, 0.747, 0.572, 0.4234, 0.3446, 0.2022, 0.1644, 0.15, 0.1426, 0.142, 0.1428, 0.1458, 0.1484, 0.1518, 0.158, 0.1696, 0.1848, 0.2008, 0.225, 0.2622, 0.3128, 0.3804, 0.4656, 0.5924, 0.7832], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Adenosine_kin.gap.json b/pfam_gap_rates/Adenosine_kin.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..62cddd20f644a7b5a1466c27ea847df152c4b116
--- /dev/null
+++ b/pfam_gap_rates/Adenosine_kin.gap.json
@@ -0,0 +1 @@
+{"family": "Adenosine_kin", "n_seqs": 155, "length": 156, "gap_rates": [0.17419354838709677, 0.08387096774193549, 0.05161290322580645, 0.03870967741935484, 0.03225806451612903, 0.025806451612903226, 0.025806451612903226, 0.025806451612903226, 0.025806451612903226, 0.025806451612903226, 0.025806451612903226, 0.025806451612903226, 0.025806451612903226, 0.012903225806451613, 0.012903225806451613, 0.012903225806451613, 0.012903225806451613, 0.012903225806451613, 0.012903225806451613, 0.012903225806451613, 0.012903225806451613, 0.012903225806451613, 0.012903225806451613, 0.012903225806451613, 0.012903225806451613, 0.012903225806451613, 0.012903225806451613, 0.012903225806451613, 0.012903225806451613, 0.0064516129032258064, 0.0064516129032258064, 0.0064516129032258064, 0.0064516129032258064, 0.0064516129032258064, 0.0064516129032258064, 0.0064516129032258064, 0.0064516129032258064, 0.0064516129032258064, 0.0064516129032258064, 0.0064516129032258064, 0.0064516129032258064, 0.0064516129032258064, 0.0064516129032258064, 0.0064516129032258064, 0.0064516129032258064, 0.0064516129032258064, 0.03225806451612903, 0.0064516129032258064, 0.0064516129032258064, 0.0064516129032258064, 0.0064516129032258064, 0.0064516129032258064, 0.0064516129032258064, 0.0064516129032258064, 0.0064516129032258064, 0.0064516129032258064, 0.0064516129032258064, 0.0064516129032258064, 0.0064516129032258064, 0.0064516129032258064, 0.012903225806451613, 0.0064516129032258064, 0.0064516129032258064, 0.0064516129032258064, 0.0064516129032258064, 0.0064516129032258064, 0.0064516129032258064, 0.0064516129032258064, 0.0064516129032258064, 0.0064516129032258064, 0.0064516129032258064, 0.0064516129032258064, 0.0064516129032258064, 0.0064516129032258064, 0.0064516129032258064, 0.0064516129032258064, 0.0064516129032258064, 0.0064516129032258064, 0.0064516129032258064, 0.0064516129032258064, 0.0064516129032258064, 0.0064516129032258064, 0.0064516129032258064, 0.0064516129032258064, 0.012903225806451613, 0.8838709677419355, 0.012903225806451613, 0.012903225806451613, 0.012903225806451613, 0.012903225806451613, 0.012903225806451613, 0.012903225806451613, 0.012903225806451613, 0.012903225806451613, 0.012903225806451613, 0.012903225806451613, 0.012903225806451613, 0.012903225806451613, 0.012903225806451613, 0.012903225806451613, 0.012903225806451613, 0.012903225806451613, 0.012903225806451613, 0.012903225806451613, 0.012903225806451613, 0.012903225806451613, 0.012903225806451613, 0.012903225806451613, 0.012903225806451613, 0.012903225806451613, 0.012903225806451613, 0.012903225806451613, 0.012903225806451613, 0.012903225806451613, 0.012903225806451613, 0.012903225806451613, 0.012903225806451613, 0.012903225806451613, 0.012903225806451613, 0.0064516129032258064, 0.0064516129032258064, 0.0064516129032258064, 0.0064516129032258064, 0.012903225806451613, 0.012903225806451613, 0.012903225806451613, 0.012903225806451613, 0.012903225806451613, 0.012903225806451613, 0.012903225806451613, 0.012903225806451613, 0.012903225806451613, 0.012903225806451613, 0.012903225806451613, 0.012903225806451613, 0.012903225806451613, 0.012903225806451613, 0.012903225806451613, 0.012903225806451613, 0.012903225806451613, 0.012903225806451613, 0.012903225806451613, 0.012903225806451613, 0.012903225806451613, 0.012903225806451613, 0.012903225806451613, 0.012903225806451613, 0.012903225806451613, 0.012903225806451613, 0.012903225806451613, 0.012903225806451613, 0.9483870967741935, 0.012903225806451613, 0.01935483870967742, 0.025806451612903226, 0.03870967741935484], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/AdoHcyase_NAD.gap.json b/pfam_gap_rates/AdoHcyase_NAD.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..54cadd5d82dfb38dd3fb68226b70849638371f4f
--- /dev/null
+++ b/pfam_gap_rates/AdoHcyase_NAD.gap.json
@@ -0,0 +1 @@
+{"family": "AdoHcyase_NAD", "n_seqs": 1809, "length": 164, "gap_rates": [0.07739082365948037, 0.0685461580983969, 0.06633499170812604, 0.06246545052515202, 0.06135986733001658, 0.06080707573244887, 0.06025428413488115, 0.05804311774461028, 0.05804311774461028, 0.056937534549474846, 0.05306799336650083, 0.050304035378662244, 0.04975124378109453, 0.04532891100055279, 0.04090657822001106, 0.03980099502487562, 0.03814262023217247, 0.03648424543946932, 0.03482587064676617, 0.0326147042564953, 0.025981205085682697, 0.024875621890547265, 0.024875621890547265, 0.02321724709784411, 0.02155887230514096, 0.01990049751243781, 0.02045328911000553, 0.02045328911000553, 0.02045328911000553, 0.02045328911000553, 0.02045328911000553, 0.02045328911000553, 0.02045328911000553, 0.02045328911000553, 0.02045328911000553, 0.021006080707573246, 0.021006080707573246, 0.021006080707573246, 0.02211166390270868, 0.02211166390270868, 0.02155887230514096, 0.02211166390270868, 0.02211166390270868, 0.02211166390270868, 0.021006080707573246, 0.02155887230514096, 0.021006080707573246, 0.021006080707573246, 0.021006080707573246, 0.021006080707573246, 0.021006080707573246, 0.021006080707573246, 0.02155887230514096, 0.02211166390270868, 0.02211166390270868, 0.02211166390270868, 0.02211166390270868, 0.022664455500276397, 0.022664455500276397, 0.02155887230514096, 0.021006080707573246, 0.02155887230514096, 0.02211166390270868, 0.017689331122166942, 0.017689331122166942, 0.017136539524599224, 0.017136539524599224, 0.01658374792703151, 0.017136539524599224, 0.017136539524599224, 0.017689331122166942, 0.017689331122166942, 0.017689331122166942, 0.01824212271973466, 0.018794914317302378, 0.018794914317302378, 0.019347705914870093, 0.01824212271973466, 0.01824212271973466, 0.01824212271973466, 0.01824212271973466, 0.01824212271973466, 0.01824212271973466, 0.02045328911000553, 0.01990049751243781, 0.018794914317302378, 0.021006080707573246, 0.02045328911000553, 0.02211166390270868, 0.02211166390270868, 0.024875621890547265, 0.02377003869541183, 0.024322830292979547, 0.02211166390270868, 0.022664455500276397, 0.022664455500276397, 0.01990049751243781, 0.02045328911000553, 0.02045328911000553, 0.02045328911000553, 0.02045328911000553, 0.021006080707573246, 0.021006080707573246, 0.02045328911000553, 0.02045328911000553, 0.021006080707573246, 0.021006080707573246, 0.02211166390270868, 0.02321724709784411, 0.026533996683250415, 0.027086788280818133, 0.028192371475953566, 0.029297954671088998, 0.03095632946379215, 0.030403537866224434, 0.03095632946379215, 0.030403537866224434, 0.03095632946379215, 0.030403537866224434, 0.03150912106135987, 0.032061912658927584, 0.032061912658927584, 0.032061912658927584, 0.032061912658927584, 0.7435046987285793, 0.2990602542841349, 0.23604201216141515, 0.03814262023217247, 0.037589828634604756, 0.03648424543946932, 0.037037037037037035, 0.03648424543946932, 0.03648424543946932, 0.03648424543946932, 0.037589828634604756, 0.037037037037037035, 0.03814262023217247, 0.03814262023217247, 0.038695411829740185, 0.03980099502487562, 0.04145936981757877, 0.08402432283029299, 0.04754007739082366, 0.9154228855721394, 0.04754007739082366, 0.04311774461028192, 0.04145936981757877, 0.040353786622443336, 0.04145936981757877, 0.040353786622443336, 0.04090657822001106, 0.04090657822001106, 0.04145936981757877, 0.04145936981757877, 0.04145936981757877, 0.04201216141514649, 0.04201216141514649, 0.04256495301271421, 0.04643449419568822, 0.04975124378109453, 0.05638474295190713, 0.0812603648424544, 0.15201768933112217, 0.3388612493090105], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Aft1_HRA.gap.json b/pfam_gap_rates/Aft1_HRA.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..4a8f01f4e361d88de410bf19d7a84df2ca8af786
--- /dev/null
+++ b/pfam_gap_rates/Aft1_HRA.gap.json
@@ -0,0 +1 @@
+{"family": "Aft1_HRA", "n_seqs": 100, "length": 105, "gap_rates": [0.7, 0.4, 0.32, 0.28, 0.27, 0.13, 0.34, 0.72, 0.83, 0.89, 0.95, 0.85, 0.82, 0.2, 0.03, 0.03, 0.03, 0.03, 0.03, 0.03, 0.03, 0.03, 0.03, 0.03, 0.03, 0.01, 0.01, 0.01, 0.0, 0.0, 0.0, 0.31, 0.38, 0.64, 0.62, 0.65, 0.61, 0.58, 0.87, 0.91, 0.92, 0.92, 0.94, 0.95, 0.93, 0.92, 0.92, 0.88, 0.86, 0.11, 0.04, 0.03, 0.03, 0.94, 0.62, 0.3, 0.21, 0.06, 0.04, 0.04, 0.05, 0.06, 0.04, 0.04, 0.5, 0.04, 0.04, 0.04, 0.04, 0.04, 0.8, 0.13, 0.13, 0.09, 0.06, 0.06, 0.06, 0.08, 0.08, 0.08, 0.87, 0.9, 0.9, 0.91, 0.9, 0.88, 0.78, 0.09, 0.11, 0.1, 0.11, 0.11, 0.1, 0.12, 0.15, 0.12, 0.14, 0.14, 0.15, 0.16, 0.16, 0.17, 0.2, 0.25, 0.42], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Alginate_lyase2.gap.json b/pfam_gap_rates/Alginate_lyase2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..58090812745734b4888168e8481e7f9f42c9d70b
--- /dev/null
+++ b/pfam_gap_rates/Alginate_lyase2.gap.json
@@ -0,0 +1 @@
+{"family": "Alginate_lyase2", "n_seqs": 267, "length": 374, "gap_rates": [0.4943820224719101, 0.45692883895131087, 0.41947565543071164, 0.2883895131086142, 0.24719101123595505, 0.2209737827715356, 0.21348314606741572, 0.20224719101123595, 0.20224719101123595, 0.19850187265917604, 0.19850187265917604, 0.2846441947565543, 0.38202247191011235, 0.7303370786516854, 0.9325842696629213, 0.947565543071161, 0.9400749063670412, 0.7715355805243446, 0.5543071161048689, 0.43820224719101125, 0.4232209737827715, 0.34831460674157305, 0.3333333333333333, 0.30337078651685395, 0.2883895131086142, 0.19101123595505617, 0.18352059925093633, 0.18352059925093633, 0.18352059925093633, 0.22846441947565543, 0.1947565543071161, 0.20224719101123595, 0.20599250936329588, 0.7078651685393258, 0.850187265917603, 0.6853932584269663, 0.41198501872659177, 0.16853932584269662, 0.15355805243445692, 0.15355805243445692, 0.5056179775280899, 0.9063670411985019, 0.9325842696629213, 0.9250936329588015, 0.9063670411985019, 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\ No newline at end of file
diff --git a/pfam_gap_rates/Alpha_adaptinC2.gap.json b/pfam_gap_rates/Alpha_adaptinC2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..175791f4897a16ad3f2ba32ba48055ab5c2ce46d
--- /dev/null
+++ b/pfam_gap_rates/Alpha_adaptinC2.gap.json
@@ -0,0 +1 @@
+{"family": "Alpha_adaptinC2", "n_seqs": 988, "length": 127, "gap_rates": [0.8087044534412956, 0.451417004048583, 0.32894736842105265, 0.2520242914979757, 0.19635627530364372, 0.18522267206477733, 0.15789473684210525, 0.12449392712550607, 0.06983805668016195, 0.05161943319838057, 0.04554655870445344, 0.03744939271255061, 0.0354251012145749, 0.0354251012145749, 0.03137651821862348, 0.027327935222672066, 0.022267206477732792, 0.022267206477732792, 0.02125506072874494, 0.9038461538461539, 0.937246963562753, 0.6558704453441295, 0.5425101214574899, 0.4149797570850202, 0.02125506072874494, 0.013157894736842105, 0.013157894736842105, 0.012145748987854251, 0.009109311740890687, 0.008097165991902834, 0.006072874493927126, 0.006072874493927126, 0.006072874493927126, 0.006072874493927126, 0.006072874493927126, 0.006072874493927126, 0.005060728744939271, 0.006072874493927126, 0.010121457489878543, 0.9089068825910931, 0.016194331983805668, 0.009109311740890687, 0.004048582995951417, 0.005060728744939271, 0.005060728744939271, 0.006072874493927126, 0.005060728744939271, 0.004048582995951417, 0.004048582995951417, 0.005060728744939271, 0.00708502024291498, 0.006072874493927126, 0.004048582995951417, 0.012145748987854251, 0.011133603238866396, 0.011133603238866396, 0.01417004048582996, 0.06983805668016195, 0.06275303643724696, 0.06174089068825911, 0.9402834008097166, 0.937246963562753, 0.01417004048582996, 0.01417004048582996, 0.013157894736842105, 0.01417004048582996, 0.016194331983805668, 0.016194331983805668, 0.016194331983805668, 0.016194331983805668, 0.018218623481781375, 0.02327935222672065, 0.8269230769230769, 0.10728744939271255, 0.4564777327935223, 0.8856275303643725, 0.9018218623481782, 0.8977732793522267, 0.8259109311740891, 0.4271255060728745, 0.022267206477732792, 0.020242914979757085, 0.018218623481781375, 0.018218623481781375, 0.018218623481781375, 0.018218623481781375, 0.018218623481781375, 0.018218623481781375, 0.020242914979757085, 0.02125506072874494, 0.02631578947368421, 0.02631578947368421, 0.6639676113360324, 0.7773279352226721, 0.631578947368421, 0.06275303643724696, 0.05161943319838057, 0.039473684210526314, 0.043522267206477734, 0.0465587044534413, 0.04959514170040486, 0.05060728744939271, 0.05060728744939271, 0.05060728744939271, 0.05161943319838057, 0.053643724696356275, 0.05668016194331984, 0.12854251012145748, 0.13562753036437247, 0.13866396761133604, 0.5404858299595142, 0.2975708502024291, 0.3097165991902834, 0.3188259109311741, 0.895748987854251, 0.20242914979757085, 0.21558704453441296, 0.20647773279352227, 0.2125506072874494, 0.2408906882591093, 0.30870445344129555, 0.33704453441295545, 0.3866396761133603, 0.4180161943319838, 0.4706477732793522, 0.5020242914979757, 0.6477732793522267], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Amastin.gap.json b/pfam_gap_rates/Amastin.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a7cce687a995dc2079383dfc74cf7b697093ac5f
--- /dev/null
+++ b/pfam_gap_rates/Amastin.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Amidohydro_3.gap.json b/pfam_gap_rates/Amidohydro_3.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f7f70b825f4b759c6eeb287c030f9eebfef0f3f3
--- /dev/null
+++ b/pfam_gap_rates/Amidohydro_3.gap.json
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\ No newline at end of file
diff --git a/pfam_gap_rates/Aminotran_1_2.gap.json b/pfam_gap_rates/Aminotran_1_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f87969eff63da78d22e8bb5e806620f890bb48ea
--- /dev/null
+++ b/pfam_gap_rates/Aminotran_1_2.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Aminotran_4.gap.json b/pfam_gap_rates/Aminotran_4.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..6fc70d83d6d05bd0a6bb0d074b97358e1383dbe5
--- /dev/null
+++ b/pfam_gap_rates/Aminotran_4.gap.json
@@ -0,0 +1 @@
+{"family": "Aminotran_4", "n_seqs": 5000, "length": 266, "gap_rates": [0.5472, 0.1266, 0.1006, 0.0932, 0.092, 0.0904, 0.0884, 0.088, 0.0876, 0.5772, 0.8796, 0.5824, 0.5598, 0.0802, 0.08, 0.0732, 0.0614, 0.6868, 0.6606, 0.055, 0.0544, 0.0528, 0.052, 0.052, 0.0514, 0.0506, 0.0506, 0.0506, 0.0504, 0.05, 0.0496, 0.0494, 0.0492, 0.945, 0.05, 0.0502, 0.05, 0.5284, 0.1838, 0.056, 0.0594, 0.052, 0.0658, 0.0508, 0.05, 0.0498, 0.0486, 0.0486, 0.0474, 0.0476, 0.0472, 0.0468, 0.0464, 0.0464, 0.054, 0.053, 0.0564, 0.0546, 0.0512, 0.055, 0.0522, 0.0574, 0.0682, 0.596, 0.6352, 0.6518, 0.871, 0.6684, 0.645, 0.6188, 0.4874, 0.1074, 0.0888, 0.0494, 0.045, 0.045, 0.0448, 0.0448, 0.0462, 0.0466, 0.0488, 0.0484, 0.1566, 0.1524, 0.1572, 0.1602, 0.7114, 0.8998, 0.7562, 0.5438, 0.3712, 0.1594, 0.1462, 0.137, 0.1278, 0.1208, 0.0848, 0.0674, 0.0556, 0.0506, 0.048, 0.0482, 0.05, 0.0486, 0.0482, 0.0488, 0.0482, 0.047, 0.0462, 0.0466, 0.047, 0.0488, 0.0506, 0.0474, 0.5256, 0.7676, 0.8244, 0.621, 0.3824, 0.3096, 0.2388, 0.1438, 0.0846, 0.073, 0.0634, 0.0666, 0.2614, 0.0628, 0.049, 0.0422, 0.0406, 0.0388, 0.0376, 0.0422, 0.038, 0.0396, 0.0434, 0.039, 0.0372, 0.0362, 0.035, 0.0334, 0.0316, 0.61, 0.0308, 0.0374, 0.0362, 0.032, 0.0306, 0.03, 0.0298, 0.0282, 0.0272, 0.0266, 0.025, 0.023, 0.0238, 0.0236, 0.0312, 0.0316, 0.0248, 0.0164, 0.016, 0.0154, 0.9312, 0.0492, 0.016, 0.0338, 0.0244, 0.0394, 0.017, 0.0268, 0.8078, 0.795, 0.0146, 0.0146, 0.0146, 0.0146, 0.0144, 0.0146, 0.0138, 0.0138, 0.0136, 0.809, 0.0134, 0.0136, 0.0138, 0.0148, 0.857, 0.8704, 0.9124, 0.8632, 0.8404, 0.0148, 0.015, 0.0148, 0.0144, 0.014, 0.0138, 0.014, 0.083, 0.0688, 0.0286, 0.0208, 0.2276, 0.0162, 0.0156, 0.0158, 0.0156, 0.0156, 0.0154, 0.0156, 0.0158, 0.0158, 0.016, 0.016, 0.0162, 0.018, 0.0986, 0.1198, 0.1276, 0.131, 0.9358, 0.947, 0.8312, 0.0892, 0.0876, 0.0778, 0.0346, 0.0272, 0.024, 0.0238, 0.0246, 0.0254, 0.0254, 0.0256, 0.026, 0.026, 0.0268, 0.0372, 0.7828, 0.7908, 0.7992, 0.7942, 0.7904, 0.7788, 0.037, 0.0324, 0.0312, 0.033, 0.0332, 0.0334, 0.0344, 0.0346, 0.0358, 0.0378, 0.0402, 0.0448, 0.0498, 0.0548, 0.0632, 0.0854, 0.1034, 0.162, 0.2818, 0.5696], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Ank.gap.json b/pfam_gap_rates/Ank.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e79c8a2a30eb76cb56a8eabdce5eb439ea2ee3d5
--- /dev/null
+++ b/pfam_gap_rates/Ank.gap.json
@@ -0,0 +1 @@
+{"family": "Ank", "n_seqs": 3717, "length": 44, "gap_rates": [0.7102502017756255, 0.3042776432606941, 0.14527845036319612, 0.04573580844767285, 0.01560398170567662, 0.008071025020177562, 0.0053806833467850415, 0.003766478342749529, 0.01775625504439064, 0.002421307506053269, 0.8520312079634114, 0.9257465698143664, 0.9443099273607748, 0.8727468388485338, 0.8259348937315039, 0.026365348399246705, 0.05138552596179715, 0.04465967177831585, 0.08205542103847188, 0.9203658864675813, 0.9478073715361851, 0.935969868173258, 0.8983050847457628, 0.06618240516545601, 0.05918751681463546, 0.0016142050040355124, 0.0018832391713747645, 0.004842615012106538, 0.01560398170567662, 0.007532956685499058, 0.012375571697605597, 0.14904492870594566, 0.06429916599408125, 0.9149852031207963, 0.06268496099004574, 0.9494215765402206, 0.09227871939736347, 0.1100349744417541, 0.13801452784503632, 0.19827818132902877, 0.25854183481302123, 0.3492063492063492, 0.4474038202851762, 0.8337368845843423], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/ApbA_C.gap.json b/pfam_gap_rates/ApbA_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..7a6d89053c1bfff6b06c10d1c7b8c2b3ed915a12
--- /dev/null
+++ b/pfam_gap_rates/ApbA_C.gap.json
@@ -0,0 +1 @@
+{"family": "ApbA_C", "n_seqs": 2037, "length": 163, "gap_rates": [0.5110456553755522, 0.23907707412862053, 0.1723122238586156, 0.12272950417280314, 0.07118311242022582, 0.06087383406971036, 0.05547373588610702, 0.052037309769268535, 0.050073637702503684, 0.044673539518900345, 0.043691703485517916, 0.043691703485517916, 0.043200785468826705, 0.11242022582228768, 0.045164457535591555, 0.044182621502209134, 0.043691703485517916, 0.045164457535591555, 0.04221894943544428, 0.041237113402061855, 0.041237113402061855, 0.040746195385370644, 0.04025527736867943, 0.043200785468826705, 0.04221894943544428, 0.041728031418753066, 0.043691703485517916, 0.9312714776632303, 0.047619047619047616, 0.04025527736867943, 0.04025527736867943, 0.044182621502209134, 0.9160530191458026, 0.12567501227295041, 0.06971035837015219, 0.04221894943544428, 0.041237113402061855, 0.03289150711831124, 0.027491408934707903, 0.022582228767795778, 0.023564064801178203, 0.019636720667648502, 0.018654884634266077, 0.018654884634266077, 0.018654884634266077, 0.01718213058419244, 0.016200294550810016, 0.015709376534118802, 0.015709376534118802, 0.016200294550810016, 0.015709376534118802, 0.016200294550810016, 0.016200294550810016, 0.022091310751104567, 0.027000490918016692, 0.027982326951399118, 0.025036818851251842, 0.8718703976435935, 0.8811978399607265, 0.8915071183112421, 0.9027982326951399, 0.9356897398134512, 0.9450171821305842, 0.946980854197349, 0.9401080019636721, 0.9175257731958762, 0.8964162984781542, 0.8861070201276386, 0.8762886597938144, 0.8669612174766814, 0.09425625920471281, 0.11536573392243496, 0.8487972508591065, 0.07363770250368189, 0.06529209621993128, 0.054491899852724596, 0.054982817869415807, 0.9420716740304369, 0.32989690721649484, 0.9027982326951399, 0.9057437407952872, 0.9126165930289641, 0.9199803632793323, 0.9243986254295533, 0.9337260677466863, 0.937653411880216, 0.9425625920471281, 0.9396170839469808, 0.9361806578301424, 0.9293078055964654, 0.9214531173294059, 0.9165439371624938, 0.9096710849288169, 0.9027982326951399, 0.9008345606283751, 0.09523809523809523, 0.044182621502209134, 0.03632793323514973, 0.026509572901325478, 0.025036818851251842, 0.025527736867943053, 0.026018654884634267, 0.025036818851251842, 0.024054982817869417, 0.024054982817869417, 0.01718213058419244, 0.9214531173294059, 0.9484536082474226, 0.9366715758468336, 0.8865979381443299, 0.033873343151693665, 0.028964162984781543, 0.027982326951399118, 0.027491408934707903, 0.8851251840942562, 0.020127638684339717, 0.015709376534118802, 0.016691212567501227, 0.014236622484045164, 0.014727540500736377, 0.014236622484045164, 0.014236622484045164, 0.013745704467353952, 0.013745704467353952, 0.013745704467353952, 0.01718213058419244, 0.018163966617574866, 0.01718213058419244, 0.015709376534118802, 0.016200294550810016, 0.016200294550810016, 0.016200294550810016, 0.016200294550810016, 0.018163966617574866, 0.01914580265095729, 0.020618556701030927, 0.021600392734413353, 0.022091310751104567, 0.023564064801178203, 0.024054982817869417, 0.027491408934707903, 0.030927835051546393, 0.031909671084928815, 0.03829160530191458, 0.04025527736867943, 0.040746195385370644, 0.041237113402061855, 0.041237113402061855, 0.04221894943544428, 0.042709867452135494, 0.042709867452135494, 0.045655375552282766, 0.047128129602356406, 0.050564555719194895, 0.05351006381934217, 0.06332842415316642, 0.06921944035346098, 0.09131075110456553, 0.10800196367206677, 0.18409425625920472, 0.28767795778105054, 0.47079037800687284, 0.7368679430535101], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/ApbE.gap.json b/pfam_gap_rates/ApbE.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..8d06d333214e786c5ee7e439b7d9298f01328281
--- /dev/null
+++ b/pfam_gap_rates/ApbE.gap.json
@@ -0,0 +1 @@
+{"family": "ApbE", "n_seqs": 1779, "length": 313, "gap_rates": [0.4682405845980888, 0.24451939291736932, 0.224283305227656, 0.2096683530073075, 0.19786396852164137, 0.1883080382237212, 0.18437324339516584, 0.1849353569421023, 0.1849353569421023, 0.18718381112984822, 0.7211916807195053, 0.880831928049466, 0.6953344575604272, 0.16863406408094436, 0.1736930860033727, 0.23946037099494097, 0.47554806070826305, 0.818999437886453, 0.9094997189432266, 0.7077009555930298, 0.28836424957841483, 0.19617762788083193, 0.1703204047217538, 0.14783586284429454, 0.24002248454187747, 0.9364811691961776, 0.9061270376616076, 0.11467116357504216, 0.10961214165261383, 0.10736368746486791, 0.2518268690275436, 0.10230466554243957, 0.1017425519955031, 0.10061832490163013, 0.09949409780775717, 0.09780775716694773, 0.09612141652613827, 0.09612141652613827, 0.0955593029792018, 0.09612141652613827, 0.09443507588532883, 0.09499718943226532, 0.0955593029792018, 0.09443507588532883, 0.09387296233839236, 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\ No newline at end of file
diff --git a/pfam_gap_rates/Aph-1.gap.json b/pfam_gap_rates/Aph-1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f66141198224977c23be62903019bc0f9665abcc
--- /dev/null
+++ b/pfam_gap_rates/Aph-1.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Aquarius_N.gap.json b/pfam_gap_rates/Aquarius_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e1fefa6f2d09ab6ee186287e6c98dd3ec150058e
--- /dev/null
+++ b/pfam_gap_rates/Aquarius_N.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Arabinose_bd.gap.json b/pfam_gap_rates/Arabinose_bd.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c0963923ec9395b6000875c430857ea30e9eb4a8
--- /dev/null
+++ b/pfam_gap_rates/Arabinose_bd.gap.json
@@ -0,0 +1 @@
+{"family": "Arabinose_bd", "n_seqs": 1030, "length": 198, "gap_rates": [0.38737864077669903, 0.3359223300970874, 0.27184466019417475, 0.23398058252427184, 0.1941747572815534, 0.1766990291262136, 0.16116504854368932, 0.1533980582524272, 0.14757281553398058, 0.141747572815534, 0.1407766990291262, 0.13592233009708737, 0.12718446601941746, 0.13009708737864079, 0.1378640776699029, 0.12524271844660195, 0.11747572815533981, 0.12330097087378641, 0.12233009708737864, 0.11650485436893204, 0.11844660194174757, 0.0912621359223301, 0.1378640776699029, 0.0825242718446602, 0.06310679611650485, 0.06019417475728155, 0.05825242718446602, 0.05631067961165048, 0.05436893203883495, 0.05436893203883495, 0.05436893203883495, 0.05242718446601942, 0.04951456310679612, 0.04951456310679612, 0.05339805825242718, 0.05145631067961165, 0.04757281553398058, 0.04757281553398058, 0.04466019417475728, 0.04563106796116505, 0.04757281553398058, 0.06893203883495146, 0.05631067961165048, 0.9398058252427185, 0.03495145631067961, 0.03203883495145631, 0.027184466019417475, 0.027184466019417475, 0.02621359223300971, 0.02621359223300971, 0.02621359223300971, 0.19611650485436893, 0.024271844660194174, 0.02233009708737864, 0.02233009708737864, 0.02233009708737864, 0.021359223300970873, 0.021359223300970873, 0.019417475728155338, 0.021359223300970873, 0.018446601941747572, 0.017475728155339806, 0.01650485436893204, 0.015533980582524271, 0.015533980582524271, 0.015533980582524271, 0.013592233009708738, 0.013592233009708738, 0.013592233009708738, 0.013592233009708738, 0.013592233009708738, 0.013592233009708738, 0.013592233009708738, 0.014563106796116505, 0.014563106796116505, 0.014563106796116505, 0.015533980582524271, 0.01650485436893204, 0.019417475728155338, 0.019417475728155338, 0.01650485436893204, 0.014563106796116505, 0.015533980582524271, 0.014563106796116505, 0.014563106796116505, 0.014563106796116505, 0.014563106796116505, 0.9271844660194175, 0.024271844660194174, 0.019417475728155338, 0.04951456310679612, 0.019417475728155338, 0.02524271844660194, 0.01650485436893204, 0.014563106796116505, 0.02621359223300971, 0.7786407766990291, 0.6980582524271844, 0.9339805825242719, 0.13203883495145632, 0.09223300970873786, 0.030097087378640777, 0.019417475728155338, 0.02330097087378641, 0.06504854368932039, 0.02330097087378641, 0.014563106796116505, 0.014563106796116505, 0.014563106796116505, 0.015533980582524271, 0.03495145631067961, 0.07378640776699029, 0.05436893203883495, 0.10388349514563107, 0.841747572815534, 0.6699029126213593, 0.2815533980582524, 0.1553398058252427, 0.10485436893203884, 0.1, 0.05436893203883495, 0.929126213592233, 0.8524271844660194, 0.04271844660194175, 0.0766990291262136, 0.2203883495145631, 0.14854368932038836, 0.8893203883495145, 0.9359223300970874, 0.7902912621359224, 0.020388349514563107, 0.024271844660194174, 0.017475728155339806, 0.01262135922330097, 0.014563106796116505, 0.013592233009708738, 0.01262135922330097, 0.010679611650485437, 0.009708737864077669, 0.010679611650485437, 0.02330097087378641, 0.01650485436893204, 0.013592233009708738, 0.011650485436893204, 0.010679611650485437, 0.010679611650485437, 0.903883495145631, 0.01262135922330097, 0.013592233009708738, 0.05339805825242718, 0.017475728155339806, 0.021359223300970873, 0.038834951456310676, 0.06504854368932039, 0.021359223300970873, 0.017475728155339806, 0.018446601941747572, 0.019417475728155338, 0.021359223300970873, 0.024271844660194174, 0.02815533980582524, 0.027184466019417475, 0.027184466019417475, 0.035922330097087375, 0.9155339805825242, 0.03300970873786408, 0.11941747572815534, 0.04563106796116505, 0.04563106796116505, 0.036893203883495145, 0.03398058252427184, 0.03398058252427184, 0.03203883495145631, 0.03300970873786408, 0.040776699029126215, 0.03495145631067961, 0.03398058252427184, 0.03398058252427184, 0.03398058252427184, 0.036893203883495145, 0.036893203883495145, 0.039805825242718446, 0.040776699029126215, 0.04563106796116505, 0.04563106796116505, 0.06116504854368932, 0.04466019417475728, 0.04563106796116505, 0.04563106796116505, 0.05145631067961165, 0.06019417475728155, 0.06796116504854369, 0.07961165048543689, 0.0912621359223301, 0.11650485436893204, 0.17378640776699028, 0.2815533980582524, 0.5475728155339806], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Arg_tRNA_synt_N.gap.json b/pfam_gap_rates/Arg_tRNA_synt_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a8e4a2b49e812e8bdf9253727d3239f01da8d695
--- /dev/null
+++ b/pfam_gap_rates/Arg_tRNA_synt_N.gap.json
@@ -0,0 +1 @@
+{"family": "Arg_tRNA_synt_N", "n_seqs": 2498, "length": 100, "gap_rates": [0.7173738991192954, 0.42153722978382707, 0.3254603682946357, 0.24739791833466773, 0.19855884707766214, 0.16533226581265012, 0.14851881505204162, 0.1313050440352282, 0.11729383506805445, 0.11248999199359487, 0.10808646917534027, 0.10408326661329063, 0.10408326661329063, 0.40192153722978385, 0.677341873498799, 0.7594075260208166, 0.944755804643715, 0.8566853482786229, 0.7269815852682145, 0.5916733386709367, 0.29743795036028825, 0.18654923939151322, 0.08646917534027222, 0.04683746997598078, 0.03362690152121697, 0.02722177742193755, 0.03362690152121697, 0.027622097678142513, 0.021617293835068056, 0.018414731785428344, 0.017614091273018415, 0.026821457165732587, 0.06365092073658928, 0.08166533226581266, 0.03042433947157726, 0.01120896717373899, 0.008006405124099279, 0.008006405124099279, 0.006405124099279423, 0.006405124099279423, 0.006405124099279423, 0.00600480384307446, 0.006405124099279423, 0.006405124099279423, 0.02121697357886309, 0.1489191353082466, 0.07085668534827862, 0.022017614091273018, 0.009607686148919135, 0.009607686148919135, 0.009607686148919135, 0.01200960768614892, 0.010008006405124099, 0.011609287429943955, 0.009207365892714172, 0.008006405124099279, 0.9075260208166533, 0.911128903122498, 0.9495596477181746, 0.9151321056845476, 0.9091273018414732, 0.9055244195356285, 0.006405124099279423, 0.00600480384307446, 0.006405124099279423, 0.0068054443554843875, 0.0068054443554843875, 0.003602882305844676, 0.0032025620496397116, 0.0032025620496397116, 0.0032025620496397116, 0.003602882305844676, 0.0040032025620496394, 0.003602882305844676, 0.004403522818254604, 0.004803843074459567, 0.00600480384307446, 0.0068054443554843875, 0.009207365892714172, 0.12289831865492394, 0.8498799039231385, 0.9315452361889511, 0.911128903122498, 0.6853482786228983, 0.018014411529223378, 0.01200960768614892, 0.012810248198558846, 0.010008006405124099, 0.010408326661329063, 0.010408326661329063, 0.014811849479583666, 0.01401120896717374, 0.12249799839871897, 0.16172938350680544, 0.012810248198558846, 0.012810248198558846, 0.01401120896717374, 0.01401120896717374, 0.03042433947157726, 0.23859087269815854], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/AsmA_2.gap.json b/pfam_gap_rates/AsmA_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..60742dccf5084d08b8ac89af73f9a2e8f1d6a4c6
--- /dev/null
+++ b/pfam_gap_rates/AsmA_2.gap.json
@@ -0,0 +1 @@
+{"family": "AsmA_2", "n_seqs": 1085, "length": 281, "gap_rates": [0.728110599078341, 0.5087557603686635, 0.3870967741935484, 0.3244239631336406, 0.2903225806451613, 0.2654377880184332, 0.2534562211981567, 0.2368663594470046, 0.2294930875576037, 0.22119815668202766, 0.2129032258064516, 0.19815668202764977, 0.18617511520737326, 0.9483870967741935, 0.17603686635944701, 0.1695852534562212, 0.16774193548387098, 0.16682027649769585, 0.16497695852534563, 0.1622119815668203, 0.15299539170506912, 0.14654377880184333, 0.14193548387096774, 0.1400921658986175, 0.13640552995391705, 0.12626728110599078, 0.12165898617511521, 0.11981566820276497, 0.11612903225806452, 0.12626728110599078, 0.11244239631336406, 0.10875576036866359, 0.10783410138248847, 0.10691244239631337, 0.10691244239631337, 0.10414746543778802, 0.1032258064516129, 0.1032258064516129, 0.10875576036866359, 0.9078341013824884, 0.8193548387096774, 0.12995391705069123, 0.17788018433179723, 0.31797235023041476, 0.17972350230414746, 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\ No newline at end of file
diff --git a/pfam_gap_rates/Autotransporter.gap.json b/pfam_gap_rates/Autotransporter.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..8013a1ff8d23fd288d0211440d50c2e7be6b01f5
--- /dev/null
+++ b/pfam_gap_rates/Autotransporter.gap.json
@@ -0,0 +1 @@
+{"family": "Autotransporter", "n_seqs": 1061, "length": 310, "gap_rates": [0.8916116870876531, 0.6559849198868991, 0.5174363807728558, 0.3977379830348728, 0.3063147973609802, 0.24976437323279924, 0.22714420358152687, 0.21206409048067862, 0.20263901979264845, 0.19604147031102734, 0.18661639962299717, 0.19604147031102734, 0.18567389255419417, 0.176248821866164, 0.17530631479736097, 0.17153628652214892, 0.9227144203581527, 0.36757775683317623, 0.2761545711592837, 0.22431668237511782, 0.20358152686145145, 0.18001885014137606, 0.15551366635249764, 0.1281809613572102, 0.12441093308199812, 0.12158341187558906, 0.12158341187558906, 0.1234684260131951, 0.944392082940622, 0.13854853911404336, 0.13289349670122527, 0.12629594721960416, 0.11687087653157399, 0.10461828463713478, 0.10084825636192271, 0.09613572101790764, 0.09707822808671066, 0.09142318567389256, 0.08953817153628653, 0.08765315739868049, 0.08671065032987747, 0.08671065032987747, 0.08576814326107446, 0.7719132893496701, 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\ No newline at end of file
diff --git a/pfam_gap_rates/B5.gap.json b/pfam_gap_rates/B5.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..2e609db31efc367edb152597505d005ad44a89e5
--- /dev/null
+++ b/pfam_gap_rates/B5.gap.json
@@ -0,0 +1 @@
+{"family": "B5", "n_seqs": 2507, "length": 72, "gap_rates": [0.5715995213402473, 0.32070203430394895, 0.11248504188272836, 0.07179896290386917, 0.04946150777822098, 0.03669724770642202, 0.030315117670522536, 0.02512963701635421, 0.021938571998404467, 0.01874750698045473, 0.016354208216992423, 0.015955325089748704, 0.015157558835261268, 0.013960909453530115, 0.013960909453530115, 0.01316314319904268, 0.011168727562824093, 0.009573195053849222, 0.008376545672118069, 0.006781013163143199, 0.005983246908655764, 0.004786597526924611, 0.005185480654168329, 0.004786597526924611, 0.004786597526924611, 0.003988831272437176, 0.0035899481451934583, 0.0035899481451934583, 0.0031910650179497405, 0.0031910650179497405, 0.0031910650179497405, 0.8611886717191862, 0.9389708815317112, 0.9190267251695253, 0.8264858396489828, 0.07299561228560032, 0.4918228958915038, 0.12126047068209014, 0.08815317112086159, 0.03191065017949741, 0.023932987634623055, 0.005983246908655764, 0.03669724770642202, 0.03390506581571599, 0.0035899481451934583, 0.001994415636218588, 0.002792181890706023, 0.0007977662544874351, 0.0, 0.0, 0.00039888312724371757, 0.00039888312724371757, 0.9289988033506182, 0.0007977662544874351, 0.0007977662544874351, 0.0007977662544874351, 0.0007977662544874351, 0.0007977662544874351, 0.0007977662544874351, 0.0007977662544874351, 0.0011966493817311527, 0.002792181890706023, 0.002792181890706023, 0.0031910650179497405, 0.0035899481451934583, 0.0035899481451934583, 0.0035899481451934583, 0.004786597526924611, 0.010370961308336658, 0.03230953330674113, 0.04028719585161548, 0.10809732748304747], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/B56.gap.json b/pfam_gap_rates/B56.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b2806202c699559eee9067c238795dde6b55ec68
--- /dev/null
+++ b/pfam_gap_rates/B56.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/B9-C2.gap.json b/pfam_gap_rates/B9-C2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..985c77ad0494bc7be464e9f17981cca98d8a5aad
--- /dev/null
+++ b/pfam_gap_rates/B9-C2.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/BAR_3_WASP_bdg.gap.json b/pfam_gap_rates/BAR_3_WASP_bdg.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..4d689125e4d6ebf667972fdd4af3b1dd3fb79596
--- /dev/null
+++ b/pfam_gap_rates/BAR_3_WASP_bdg.gap.json
@@ -0,0 +1 @@
+{"family": "BAR_3_WASP_bdg", "n_seqs": 183, "length": 237, "gap_rates": [0.3770491803278688, 0.3224043715846995, 0.31693989071038253, 0.29508196721311475, 0.29508196721311475, 0.29508196721311475, 0.2896174863387978, 0.2896174863387978, 0.2896174863387978, 0.2896174863387978, 0.2896174863387978, 0.29508196721311475, 0.2896174863387978, 0.2896174863387978, 0.29508196721311475, 0.2896174863387978, 0.29508196721311475, 0.2896174863387978, 0.2896174863387978, 0.2896174863387978, 0.2896174863387978, 0.2896174863387978, 0.2896174863387978, 0.3005464480874317, 0.3005464480874317, 0.3005464480874317, 0.3005464480874317, 0.4972677595628415, 0.3005464480874317, 0.30601092896174864, 0.73224043715847, 0.32786885245901637, 0.3114754098360656, 0.30601092896174864, 0.30601092896174864, 0.3005464480874317, 0.3005464480874317, 0.3005464480874317, 0.3005464480874317, 0.3114754098360656, 0.3114754098360656, 0.3114754098360656, 0.30601092896174864, 0.3005464480874317, 0.29508196721311475, 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\ No newline at end of file
diff --git a/pfam_gap_rates/BAT.gap.json b/pfam_gap_rates/BAT.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..5a061a482c5ef3a7bfe2d8205a9fdd1b8222e91f
--- /dev/null
+++ b/pfam_gap_rates/BAT.gap.json
@@ -0,0 +1 @@
+{"family": "BAT", "n_seqs": 102, "length": 165, "gap_rates": [0.5980392156862745, 0.5588235294117647, 0.49019607843137253, 0.45098039215686275, 0.4411764705882353, 0.38235294117647056, 0.29411764705882354, 0.2549019607843137, 0.22549019607843138, 0.20588235294117646, 0.20588235294117646, 0.21568627450980393, 0.20588235294117646, 0.19607843137254902, 0.18627450980392157, 0.18627450980392157, 0.18627450980392157, 0.20588235294117646, 0.8529411764705882, 0.1568627450980392, 0.12745098039215685, 0.12745098039215685, 0.11764705882352941, 0.10784313725490197, 0.06862745098039216, 0.9411764705882353, 0.0392156862745098, 0.0392156862745098, 0.029411764705882353, 0.0196078431372549, 0.0196078431372549, 0.0196078431372549, 0.0196078431372549, 0.0196078431372549, 0.0196078431372549, 0.0196078431372549, 0.0196078431372549, 0.09803921568627451, 0.058823529411764705, 0.0196078431372549, 0.11764705882352941, 0.06862745098039216, 0.00980392156862745, 0.029411764705882353, 0.0196078431372549, 0.0196078431372549, 0.0196078431372549, 0.00980392156862745, 0.00980392156862745, 0.00980392156862745, 0.0196078431372549, 0.06862745098039216, 0.058823529411764705, 0.12745098039215685, 0.058823529411764705, 0.0196078431372549, 0.00980392156862745, 0.00980392156862745, 0.00980392156862745, 0.00980392156862745, 0.00980392156862745, 0.0196078431372549, 0.06862745098039216, 0.0196078431372549, 0.0196078431372549, 0.0196078431372549, 0.0196078431372549, 0.08823529411764706, 0.0196078431372549, 0.0196078431372549, 0.0196078431372549, 0.00980392156862745, 0.00980392156862745, 0.00980392156862745, 0.00980392156862745, 0.0196078431372549, 0.0196078431372549, 0.00980392156862745, 0.058823529411764705, 0.9411764705882353, 0.9313725490196079, 0.00980392156862745, 0.00980392156862745, 0.00980392156862745, 0.00980392156862745, 0.00980392156862745, 0.00980392156862745, 0.9215686274509803, 0.00980392156862745, 0.06862745098039216, 0.9019607843137255, 0.8823529411764706, 0.0196078431372549, 0.00980392156862745, 0.00980392156862745, 0.0196078431372549, 0.0196078431372549, 0.00980392156862745, 0.9117647058823529, 0.9117647058823529, 0.00980392156862745, 0.00980392156862745, 0.00980392156862745, 0.0196078431372549, 0.0196078431372549, 0.00980392156862745, 0.00980392156862745, 0.00980392156862745, 0.00980392156862745, 0.0196078431372549, 0.029411764705882353, 0.0196078431372549, 0.0196078431372549, 0.0196078431372549, 0.029411764705882353, 0.0392156862745098, 0.0392156862745098, 0.0392156862745098, 0.0392156862745098, 0.0392156862745098, 0.0392156862745098, 0.0392156862745098, 0.049019607843137254, 0.058823529411764705, 0.06862745098039216, 0.058823529411764705, 0.058823529411764705, 0.06862745098039216, 0.06862745098039216, 0.06862745098039216, 0.0784313725490196, 0.0784313725490196, 0.0784313725490196, 0.0784313725490196, 0.0784313725490196, 0.08823529411764706, 0.10784313725490197, 0.11764705882352941, 0.11764705882352941, 0.11764705882352941, 0.13725490196078433, 0.19607843137254902, 0.2647058823529412, 0.20588235294117646, 0.22549019607843138, 0.22549019607843138, 0.22549019607843138, 0.2647058823529412, 0.27450980392156865, 0.3137254901960784, 0.3431372549019608, 0.3627450980392157, 0.4215686274509804, 0.4215686274509804, 0.45098039215686275, 0.45098039215686275, 0.49019607843137253, 0.5196078431372549, 0.5588235294117647, 0.5784313725490197, 0.5882352941176471, 0.6274509803921569, 0.6372549019607843, 0.7254901960784313, 0.9411764705882353], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/BBP2.gap.json b/pfam_gap_rates/BBP2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..2932131ac7d29a378a1435d98248ec1bf7422376
--- /dev/null
+++ b/pfam_gap_rates/BBP2.gap.json
@@ -0,0 +1 @@
+{"family": "BBP2", "n_seqs": 262, "length": 469, "gap_rates": [0.9274809160305344, 0.30916030534351147, 0.21755725190839695, 0.1717557251908397, 0.1297709923664122, 0.12213740458015267, 0.11450381679389313, 0.11450381679389313, 0.11068702290076336, 0.10687022900763359, 0.10687022900763359, 0.10687022900763359, 0.10687022900763359, 0.10687022900763359, 0.09923664122137404, 0.09923664122137404, 0.11450381679389313, 0.11450381679389313, 0.1183206106870229, 0.26717557251908397, 0.21755725190839695, 0.183206106870229, 0.20610687022900764, 0.25572519083969464, 0.8587786259541985, 0.9198473282442748, 0.9351145038167938, 0.8931297709923665, 0.8396946564885496, 0.48854961832061067, 0.25190839694656486, 0.2900763358778626, 0.16030534351145037, 0.14122137404580154, 0.12213740458015267, 0.11068702290076336, 0.09923664122137404, 0.09541984732824428, 0.16412213740458015, 0.9427480916030534, 0.9351145038167938, 0.08015267175572519, 0.08015267175572519, 0.08015267175572519, 0.08015267175572519, 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\ No newline at end of file
diff --git a/pfam_gap_rates/BEN.gap.json b/pfam_gap_rates/BEN.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..afd9e70b860c84524b8f15fb04c46dd590708cca
--- /dev/null
+++ b/pfam_gap_rates/BEN.gap.json
@@ -0,0 +1 @@
+{"family": "BEN", "n_seqs": 340, "length": 92, "gap_rates": [0.6294117647058823, 0.21176470588235294, 0.061764705882352944, 0.03529411764705882, 0.029411764705882353, 0.014705882352941176, 0.011764705882352941, 0.008823529411764706, 0.008823529411764706, 0.0058823529411764705, 0.0058823529411764705, 0.011764705882352941, 0.008823529411764706, 0.7852941176470588, 0.7852941176470588, 0.8647058823529412, 0.8676470588235294, 0.788235294117647, 0.7852941176470588, 0.7794117647058824, 0.03529411764705882, 0.03235294117647059, 0.008823529411764706, 0.0029411764705882353, 0.01764705882352941, 0.008823529411764706, 0.008823529411764706, 0.008823529411764706, 0.008823529411764706, 0.11176470588235295, 0.11176470588235295, 0.3088235294117647, 0.3088235294117647, 0.4470588235294118, 0.4294117647058823, 0.4294117647058823, 0.4294117647058823, 0.5735294117647058, 0.8117647058823529, 0.9, 0.8294117647058824, 0.6588235294117647, 0.014705882352941176, 0.011764705882352941, 0.0058823529411764705, 0.0029411764705882353, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0029411764705882353, 0.0029411764705882353, 0.0058823529411764705, 0.008823529411764706, 0.008823529411764706, 0.008823529411764706, 0.020588235294117647, 0.026470588235294117, 0.03529411764705882, 0.03823529411764706, 0.03823529411764706, 0.041176470588235294, 0.05, 0.05, 0.05, 0.8, 0.9264705882352942, 0.8529411764705882, 0.4235294117647059, 0.38529411764705884, 0.38529411764705884, 0.29705882352941176, 0.3411764705882353, 0.32941176470588235, 0.3264705882352941, 0.3264705882352941, 0.3235294117647059, 0.2735294117647059, 0.19411764705882353, 0.19411764705882353, 0.19705882352941176, 0.19705882352941176, 0.19705882352941176, 0.2088235294117647, 0.2088235294117647, 0.22941176470588234, 0.25588235294117645, 0.3029411764705882, 0.3764705882352941, 0.5235294117647059, 0.8441176470588235], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/BK_channel_a.gap.json b/pfam_gap_rates/BK_channel_a.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e3a0dc698964dd60bfaf3cc4bd117d612cd32670
--- /dev/null
+++ b/pfam_gap_rates/BK_channel_a.gap.json
@@ -0,0 +1 @@
+{"family": "BK_channel_a", "n_seqs": 399, "length": 125, "gap_rates": [0.7894736842105263, 0.5488721804511278, 0.5112781954887218, 0.47869674185463656, 0.42105263157894735, 0.37844611528822053, 0.2982456140350877, 0.20050125313283207, 0.14285714285714285, 0.12030075187969924, 0.10526315789473684, 0.08020050125313283, 0.07268170426065163, 0.06015037593984962, 0.05764411027568922, 0.05513784461152882, 0.05764411027568922, 0.05513784461152882, 0.05513784461152882, 0.05513784461152882, 0.05513784461152882, 0.05263157894736842, 0.05263157894736842, 0.05263157894736842, 0.05012531328320802, 0.047619047619047616, 0.047619047619047616, 0.047619047619047616, 0.047619047619047616, 0.047619047619047616, 0.047619047619047616, 0.047619047619047616, 0.047619047619047616, 0.047619047619047616, 0.047619047619047616, 0.047619047619047616, 0.05012531328320802, 0.05012531328320802, 0.05012531328320802, 0.05012531328320802, 0.05263157894736842, 0.05513784461152882, 0.05764411027568922, 0.07268170426065163, 0.08521303258145363, 0.2882205513784461, 0.39348370927318294, 0.6691729323308271, 0.7694235588972431, 0.8120300751879699, 0.8345864661654135, 0.899749373433584, 0.9147869674185464, 0.9197994987468672, 0.9197994987468672, 0.9273182957393483, 0.9348370927318296, 0.949874686716792, 0.949874686716792, 0.9298245614035088, 0.9273182957393483, 0.9197994987468672, 0.9197994987468672, 0.9097744360902256, 0.8771929824561403, 0.8220551378446115, 0.7969924812030075, 0.7518796992481203, 0.07017543859649122, 0.06265664160401002, 0.05263157894736842, 0.047619047619047616, 0.047619047619047616, 0.045112781954887216, 0.045112781954887216, 0.045112781954887216, 0.045112781954887216, 0.045112781954887216, 0.047619047619047616, 0.05012531328320802, 0.05012531328320802, 0.05263157894736842, 0.05513784461152882, 0.05764411027568922, 0.05764411027568922, 0.05513784461152882, 0.05263157894736842, 0.05513784461152882, 0.05513784461152882, 0.05513784461152882, 0.05513784461152882, 0.05513784461152882, 0.05513784461152882, 0.05513784461152882, 0.06265664160401002, 0.7368421052631579, 0.7644110275689223, 0.7744360902255639, 0.7644110275689223, 0.7117794486215538, 0.05764411027568922, 0.06265664160401002, 0.06265664160401002, 0.07017543859649122, 0.07017543859649122, 0.07017543859649122, 0.07017543859649122, 0.07017543859649122, 0.07017543859649122, 0.07017543859649122, 0.08270676691729323, 0.09523809523809523, 0.10275689223057644, 0.09273182957393483, 0.09774436090225563, 0.10526315789473684, 0.10526315789473684, 0.13283208020050125, 0.9398496240601504, 0.11027568922305764, 0.11528822055137844, 0.11779448621553884, 0.12030075187969924, 0.12781954887218044, 0.2982456140350877], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/BLOC1_2.gap.json b/pfam_gap_rates/BLOC1_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..59be3b6254abf4d2aea5aa0cda0a1968b342287d
--- /dev/null
+++ b/pfam_gap_rates/BLOC1_2.gap.json
@@ -0,0 +1 @@
+{"family": "BLOC1_2", "n_seqs": 154, "length": 95, "gap_rates": [0.2792207792207792, 0.13636363636363635, 0.1038961038961039, 0.09740259740259741, 0.09740259740259741, 0.07142857142857142, 0.07142857142857142, 0.07142857142857142, 0.07142857142857142, 0.07142857142857142, 0.07142857142857142, 0.06493506493506493, 0.05844155844155844, 0.05844155844155844, 0.05844155844155844, 0.05194805194805195, 0.05194805194805195, 0.05844155844155844, 0.045454545454545456, 0.045454545454545456, 0.045454545454545456, 0.045454545454545456, 0.045454545454545456, 0.045454545454545456, 0.045454545454545456, 0.045454545454545456, 0.032467532467532464, 0.032467532467532464, 0.032467532467532464, 0.032467532467532464, 0.032467532467532464, 0.032467532467532464, 0.03896103896103896, 0.03896103896103896, 0.03896103896103896, 0.032467532467532464, 0.032467532467532464, 0.032467532467532464, 0.032467532467532464, 0.032467532467532464, 0.032467532467532464, 0.032467532467532464, 0.025974025974025976, 0.01948051948051948, 0.01948051948051948, 0.01948051948051948, 0.025974025974025976, 0.025974025974025976, 0.025974025974025976, 0.025974025974025976, 0.025974025974025976, 0.025974025974025976, 0.025974025974025976, 0.025974025974025976, 0.032467532467532464, 0.03896103896103896, 0.032467532467532464, 0.025974025974025976, 0.025974025974025976, 0.025974025974025976, 0.025974025974025976, 0.025974025974025976, 0.025974025974025976, 0.025974025974025976, 0.025974025974025976, 0.025974025974025976, 0.025974025974025976, 0.025974025974025976, 0.025974025974025976, 0.025974025974025976, 0.025974025974025976, 0.025974025974025976, 0.025974025974025976, 0.025974025974025976, 0.025974025974025976, 0.025974025974025976, 0.025974025974025976, 0.025974025974025976, 0.025974025974025976, 0.025974025974025976, 0.025974025974025976, 0.025974025974025976, 0.025974025974025976, 0.032467532467532464, 0.03896103896103896, 0.045454545454545456, 0.045454545454545456, 0.045454545454545456, 0.05194805194805195, 0.05194805194805195, 0.13636363636363635, 0.16883116883116883, 0.17532467532467533, 0.18831168831168832, 0.551948051948052], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/BMC.gap.json b/pfam_gap_rates/BMC.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..fb8cda1b3b3fabd2e31f6555ddec90cbbf286ea0
--- /dev/null
+++ b/pfam_gap_rates/BMC.gap.json
@@ -0,0 +1 @@
+{"family": "BMC", "n_seqs": 1686, "length": 90, "gap_rates": [0.07295373665480427, 0.042704626334519574, 0.037366548042704624, 0.018979833926453145, 0.0166073546856465, 0.01601423487544484, 0.0166073546856465, 0.017793594306049824, 0.020166073546856466, 0.01601423487544484, 0.0166073546856465, 0.008896797153024912, 0.0029655990510083037, 0.002372479240806643, 0.0017793594306049821, 0.0017793594306049821, 0.0017793594306049821, 0.0017793594306049821, 0.0017793594306049821, 0.0011862396204033216, 0.0011862396204033216, 0.0011862396204033216, 0.0011862396204033216, 0.0011862396204033216, 0.0011862396204033216, 0.0011862396204033216, 0.0011862396204033216, 0.0017793594306049821, 0.0011862396204033216, 0.0011862396204033216, 0.0011862396204033216, 0.0011862396204033216, 0.0011862396204033216, 0.0017793594306049821, 0.0017793594306049821, 0.0017793594306049821, 0.8938315539739027, 0.10913404507710557, 0.8279952550415184, 0.8540925266903915, 0.891459074733096, 0.9371293001186239, 0.9383155397390273, 0.935349940688019, 0.858244365361803, 0.8523131672597865, 0.7443653618030842, 0.10379596678529063, 0.10260972716488731, 0.0017793594306049821, 0.0017793594306049821, 0.0011862396204033216, 0.0011862396204033216, 0.0011862396204033216, 0.0011862396204033216, 0.9122182680901542, 0.0011862396204033216, 0.0011862396204033216, 0.0011862396204033216, 0.0011862396204033216, 0.0011862396204033216, 0.0011862396204033216, 0.0011862396204033216, 0.0011862396204033216, 0.0011862396204033216, 0.0017793594306049821, 0.0029655990510083037, 0.0029655990510083037, 0.004744958481613286, 0.00830367734282325, 0.018386714116251483, 0.02372479240806643, 0.5960854092526691, 0.34816132858837484, 0.20462633451957296, 0.8529062870699882, 0.8908659549228944, 0.7259786476868327, 0.18208778173190984, 0.19098457888493475, 0.1903914590747331, 0.20344009489916964, 0.2313167259786477, 0.24555160142348753, 0.25326215895610915, 0.2568208778173191, 0.26512455516014233, 0.2722419928825623, 0.2900355871886121, 0.3884934756820878], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/BMFP.gap.json b/pfam_gap_rates/BMFP.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..9cb7fb79b51298fcbe03255748055cf7152ce421
--- /dev/null
+++ b/pfam_gap_rates/BMFP.gap.json
@@ -0,0 +1 @@
+{"family": "BMFP", "n_seqs": 423, "length": 78, "gap_rates": [0.491725768321513, 0.32860520094562645, 0.14893617021276595, 0.09456264775413711, 0.06855791962174941, 0.054373522458628844, 0.037825059101654845, 0.03546099290780142, 0.030732860520094562, 0.030732860520094562, 0.026004728132387706, 0.02127659574468085, 0.018912529550827423, 0.016548463356973995, 0.016548463356973995, 0.018912529550827423, 0.018912529550827423, 0.018912529550827423, 0.02127659574468085, 0.016548463356973995, 0.01182033096926714, 0.014184397163120567, 0.014184397163120567, 0.640661938534279, 0.16784869976359337, 0.16312056737588654, 0.002364066193853428, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.002364066193853428, 0.004728132387706856, 0.004728132387706856, 0.004728132387706856, 0.004728132387706856, 0.004728132387706856, 0.0070921985815602835, 0.0070921985815602835, 0.0070921985815602835, 0.0070921985815602835, 0.009456264775413711, 0.009456264775413711, 0.009456264775413711, 0.009456264775413711, 0.01182033096926714, 0.014184397163120567, 0.018912529550827423, 0.02364066193853428, 0.026004728132387706, 0.037825059101654845, 0.054373522458628844, 0.08747044917257683, 0.33569739952718675], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/BNR_4.gap.json b/pfam_gap_rates/BNR_4.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..9852ef6bc171aaa609c314cedb51bec3c5bcb284
--- /dev/null
+++ b/pfam_gap_rates/BNR_4.gap.json
@@ -0,0 +1 @@
+{"family": "BNR_4", "n_seqs": 182, "length": 382, "gap_rates": [0.6098901098901099, 0.3956043956043956, 0.2967032967032967, 0.2802197802197802, 0.27472527472527475, 0.2692307692307692, 0.2692307692307692, 0.8076923076923077, 0.8406593406593407, 0.8736263736263736, 0.945054945054945, 0.8461538461538461, 0.8076923076923077, 0.8076923076923077, 0.25274725274725274, 0.24725274725274726, 0.23626373626373626, 0.23626373626373626, 0.21428571428571427, 0.21428571428571427, 0.2032967032967033, 0.1978021978021978, 0.19230769230769232, 0.1813186813186813, 0.1813186813186813, 0.1813186813186813, 0.1813186813186813, 0.22527472527472528, 0.2032967032967033, 0.1978021978021978, 0.18681318681318682, 0.8516483516483516, 0.9340659340659341, 0.8076923076923077, 0.2857142857142857, 0.22527472527472528, 0.2087912087912088, 0.19230769230769232, 0.19230769230769232, 0.1978021978021978, 0.7362637362637363, 0.25274725274725274, 0.27472527472527475, 0.17582417582417584, 0.15934065934065933, 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\ No newline at end of file
diff --git a/pfam_gap_rates/BRCT.gap.json b/pfam_gap_rates/BRCT.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..00949edfcb9cfb7fadcfd0701eaf011f7a0c4266
--- /dev/null
+++ b/pfam_gap_rates/BRCT.gap.json
@@ -0,0 +1 @@
+{"family": "BRCT", "n_seqs": 4046, "length": 91, "gap_rates": [0.8994068215521502, 0.6440929312901631, 0.4441423628274839, 0.31957488877904106, 0.18660405338606031, 0.1485417696490361, 0.11295106277805239, 0.10405338606030648, 0.09194265941670786, 0.08131487889273356, 0.07785467128027682, 0.0773603559070687, 0.9466139396935245, 0.9144834404349975, 0.29560059317844783, 0.09095402867029165, 0.07661888284725656, 0.0620365793376174, 0.053138902619871475, 0.047207118141374196, 0.04374691052891745, 0.037567968363816116, 0.03138902619871478, 0.02694018783984182, 0.024962926347009393, 0.02100840336134454, 0.9483440434997529, 0.016559565002471577, 0.01730103806228374, 0.012605042016806723, 0.010874938210578349, 0.009144834404349975, 0.007661888284725655, 0.007661888284725655, 0.007167572911517549, 0.005437469105289174, 0.005190311418685121, 0.006178942165101334, 0.9295600593178448, 0.9426594167078596, 0.921403855659911, 0.01384083044982699, 0.008897676717745922, 0.008156203657933762, 0.006178942165101334, 0.0066732575383094414, 0.005437469105289174, 0.0046959960454770145, 0.004943153732081068, 0.0046959960454770145, 0.004943153732081068, 0.004448838358872961, 0.0046959960454770145, 0.00865051903114187, 0.010874938210578349, 0.011863568956994563, 0.006920415224913495, 0.8494809688581315, 0.8947108255066732, 0.9382105783489867, 0.9485912011863569, 0.9265941670785961, 0.8813643104300544, 0.8205635195254573, 0.7209589718240237, 0.5449826989619377, 0.02347998022738507, 0.021502718734552645, 0.015818091942659415, 0.012110726643598616, 0.012605042016806723, 0.01384083044982699, 0.01458230350963915, 0.01730103806228374, 0.019525457241720216, 0.02199703410776075, 0.024962926347009393, 0.0254572417202175, 0.028670291646070194, 0.030894710825506672, 0.03064755313890262, 0.03213049925852694, 0.03929807217004449, 0.04671280276816609, 0.06030647553138903, 0.08452792881858626, 0.10331191300049432, 0.157439446366782, 0.22787938704893723, 0.35170538803756796, 0.611468116658428], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/BRK.gap.json b/pfam_gap_rates/BRK.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..1878f7088a97419fbb7786f5c46d056396fd417d
--- /dev/null
+++ b/pfam_gap_rates/BRK.gap.json
@@ -0,0 +1 @@
+{"family": "BRK", "n_seqs": 307, "length": 44, "gap_rates": [0.6579804560260586, 0.40390879478827363, 0.18241042345276873, 0.11400651465798045, 0.06514657980456026, 0.035830618892508145, 0.02280130293159609, 0.02280130293159609, 0.02280130293159609, 0.02280130293159609, 0.019543973941368076, 0.02280130293159609, 0.016286644951140065, 0.016286644951140065, 0.016286644951140065, 0.013029315960912053, 0.013029315960912053, 0.013029315960912053, 0.009771986970684038, 0.006514657980456026, 0.003257328990228013, 0.003257328990228013, 0.003257328990228013, 0.006514657980456026, 0.006514657980456026, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.003257328990228013, 0.003257328990228013, 0.009771986970684038, 0.026058631921824105, 0.03257328990228013, 0.13680781758957655, 0.19543973941368079, 0.3778501628664495, 0.5993485342019544], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Bac_DnaA.gap.json b/pfam_gap_rates/Bac_DnaA.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d11073fa4a6f00ff8dcfe2af0435eb2c37f36090
--- /dev/null
+++ b/pfam_gap_rates/Bac_DnaA.gap.json
@@ -0,0 +1 @@
+{"family": "Bac_DnaA", "n_seqs": 2704, "length": 225, "gap_rates": [0.3694526627218935, 0.26849112426035504, 0.21375739644970415, 0.17270710059171598, 0.15754437869822485, 0.14607988165680474, 0.13831360946745563, 0.1346153846153846, 0.13350591715976332, 0.1327662721893491, 0.13350591715976332, 0.13535502958579881, 0.13535502958579881, 0.1346153846153846, 0.14238165680473372, 0.1309171597633136, 0.13165680473372782, 0.13239644970414202, 0.1338757396449704, 0.1301775147928994, 0.12980769230769232, 0.1309171597633136, 0.1305473372781065, 0.12980769230769232, 0.13165680473372782, 0.12980769230769232, 0.128698224852071, 0.1294378698224852, 0.1309171597633136, 0.12980769230769232, 0.1301775147928994, 0.1283284023668639, 0.8812869822485208, 0.16974852071005916, 0.14571005917159763, 0.14349112426035504, 0.1261094674556213, 0.11168639053254438, 0.11168639053254438, 0.11131656804733728, 0.11205621301775148, 0.11205621301775148, 0.11242603550295859, 0.11242603550295859, 0.11279585798816567, 0.11353550295857988, 0.11390532544378698, 0.11353550295857988, 0.11316568047337278, 0.11353550295857988, 0.11353550295857988, 0.11242603550295859, 0.11279585798816567, 0.11279585798816567, 0.11390532544378698, 0.11316568047337278, 0.11464497041420119, 0.11760355029585799, 0.12130177514792899, 0.12980769230769232, 0.14644970414201183, 0.16752958579881658, 0.1797337278106509, 0.14977810650887574, 0.13831360946745563, 0.13831360946745563, 0.13350591715976332, 0.1294378698224852, 0.1264792899408284, 0.12389053254437869, 0.1235207100591716, 0.1268491124260355, 0.13239644970414202, 0.1327662721893491, 0.13424556213017752, 0.1390532544378698, 0.14016272189349113, 0.14349112426035504, 0.14497041420118342, 0.14534023668639054, 0.14644970414201183, 0.14681952662721892, 0.14940828402366865, 0.14792899408284024, 0.15421597633136094, 0.15680473372781065, 0.9349112426035503, 0.9434171597633136, 0.9267751479289941, 0.15569526627218935, 0.15569526627218935, 0.15606508875739644, 0.15051775147928995, 0.14681952662721892, 0.14201183431952663, 0.14238165680473372, 0.1301775147928994, 0.1253698224852071, 0.11686390532544379, 0.11464497041420119, 0.10761834319526627, 0.09985207100591716, 0.09393491124260354, 0.07988165680473373, 0.06656804733727811, 0.059541420118343194, 0.05251479289940828, 0.051775147928994084, 0.05140532544378698, 0.05140532544378698, 0.05103550295857988, 0.05325443786982249, 0.05362426035502959, 0.053994082840236685, 0.05436390532544379, 0.05547337278106509, 0.05695266272189349, 0.1227810650887574, 0.09023668639053255, 0.048446745562130175, 0.039571005917159764, 0.03587278106508876, 0.03550295857988166, 0.03587278106508876, 0.03550295857988166, 0.03550295857988166, 0.035133136094674555, 0.035133136094674555, 0.03550295857988166, 0.035133136094674555, 0.035133136094674555, 0.03698224852071006, 0.03587278106508876, 0.036242603550295856, 0.03661242603550296, 0.036242603550295856, 0.03550295857988166, 0.036242603550295856, 0.03476331360946745, 0.03439349112426036, 0.03439349112426036, 0.03698224852071006, 0.03476331360946745, 0.035133136094674555, 0.03476331360946745, 0.035133136094674555, 0.03587278106508876, 0.03735207100591716, 0.05658284023668639, 0.05732248520710059, 0.036242603550295856, 0.03772189349112426, 0.03661242603550296, 0.03772189349112426, 0.035133136094674555, 0.03550295857988166, 0.035133136094674555, 0.035133136094674555, 0.035133136094674555, 0.03550295857988166, 0.03476331360946745, 0.03476331360946745, 0.03550295857988166, 0.03439349112426036, 0.03439349112426036, 0.034023668639053255, 0.034023668639053255, 0.03365384615384615, 0.035133136094674555, 0.03439349112426036, 0.03439349112426036, 0.03550295857988166, 0.03550295857988166, 0.036242603550295856, 0.03587278106508876, 0.03735207100591716, 0.03661242603550296, 0.03661242603550296, 0.03661242603550296, 0.03661242603550296, 0.03698224852071006, 0.03661242603550296, 0.036242603550295856, 0.036242603550295856, 0.03661242603550296, 0.03698224852071006, 0.038461538461538464, 0.038461538461538464, 0.03698224852071006, 0.9212278106508875, 0.9382396449704142, 0.9119822485207101, 0.03698224852071006, 0.03698224852071006, 0.03735207100591716, 0.03809171597633136, 0.03809171597633136, 0.03809171597633136, 0.03809171597633136, 0.03809171597633136, 0.038461538461538464, 0.04031065088757396, 0.040680473372781065, 0.041789940828402365, 0.04585798816568047, 0.04326923076923077, 0.0610207100591716, 0.04770710059171598, 0.04881656804733728, 0.055103550295857985, 0.059541420118343194, 0.0621301775147929, 0.06989644970414201, 0.07396449704142012, 0.07766272189349112, 0.07988165680473373, 0.08801775147928995, 0.09430473372781065, 0.10022189349112426, 0.1290680473372781, 0.17714497041420119, 0.21856508875739644, 0.2718195266272189, 0.3546597633136095, 0.6560650887573964], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Bac_rhamnosid_N.gap.json b/pfam_gap_rates/Bac_rhamnosid_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..2848180f1d7aeeb6a7aa778d44b4076f0e31132f
--- /dev/null
+++ b/pfam_gap_rates/Bac_rhamnosid_N.gap.json
@@ -0,0 +1 @@
+{"family": "Bac_rhamnosid_N", "n_seqs": 685, "length": 189, "gap_rates": [0.7094890510948905, 0.4, 0.20437956204379562, 0.12846715328467154, 0.08029197080291971, 0.06715328467153285, 0.052554744525547446, 0.04671532846715328, 0.04671532846715328, 0.043795620437956206, 0.042335766423357665, 0.040875912408759124, 0.03941605839416058, 0.0364963503649635, 0.035036496350364967, 0.033576642335766425, 0.033576642335766425, 0.032116788321167884, 0.032116788321167884, 0.032116788321167884, 0.032116788321167884, 0.032116788321167884, 0.032116788321167884, 0.032116788321167884, 0.032116788321167884, 0.03795620437956204, 0.05693430656934306, 0.07153284671532846, 0.07737226277372262, 0.9416058394160584, 0.06423357664233577, 0.05693430656934306, 0.052554744525547446, 0.04671532846715328, 0.033576642335766425, 0.035036496350364967, 0.032116788321167884, 0.043795620437956206, 0.04525547445255475, 0.03795620437956204, 0.032116788321167884, 0.024817518248175182, 0.02335766423357664, 0.02335766423357664, 0.020437956204379562, 0.020437956204379562, 0.020437956204379562, 0.020437956204379562, 0.021897810218978103, 0.020437956204379562, 0.026277372262773723, 0.027737226277372264, 0.020437956204379562, 0.02335766423357664, 0.024817518248175182, 0.9284671532846716, 0.09781021897810219, 0.020437956204379562, 0.027737226277372264, 0.02335766423357664, 0.021897810218978103, 0.020437956204379562, 0.020437956204379562, 0.024817518248175182, 0.032116788321167884, 0.05401459854014599, 0.06861313868613139, 0.07445255474452554, 0.043795620437956206, 0.032116788321167884, 0.029197080291970802, 0.06861313868613139, 0.06277372262773723, 0.07153284671532846, 0.07007299270072993, 0.14014598540145987, 0.41751824817518246, 0.8978102189781022, 0.9313868613138686, 0.948905109489051, 0.9386861313868613, 0.9124087591240876, 0.8204379562043795, 0.3124087591240876, 0.2291970802919708, 0.1781021897810219, 0.9372262773722628, 0.11824817518248175, 0.08759124087591241, 0.059854014598540145, 0.058394160583941604, 0.05401459854014599, 0.8715328467153285, 0.04671532846715328, 0.030656934306569343, 0.020437956204379562, 0.020437956204379562, 0.021897810218978103, 0.020437956204379562, 0.02335766423357664, 0.021897810218978103, 0.020437956204379562, 0.024817518248175182, 0.030656934306569343, 0.07007299270072993, 0.07153284671532846, 0.11240875912408758, 0.05547445255474453, 0.04671532846715328, 0.049635036496350364, 0.033576642335766425, 0.021897810218978103, 0.021897810218978103, 0.024817518248175182, 0.03941605839416058, 0.021897810218978103, 0.020437956204379562, 0.020437956204379562, 0.020437956204379562, 0.020437956204379562, 0.020437956204379562, 0.021897810218978103, 0.021897810218978103, 0.7167883211678832, 0.02335766423357664, 0.02335766423357664, 0.024817518248175182, 0.026277372262773723, 0.026277372262773723, 0.026277372262773723, 0.027737226277372264, 0.032116788321167884, 0.029197080291970802, 0.9197080291970803, 0.92992700729927, 0.9474452554744526, 0.9255474452554745, 0.9153284671532846, 0.029197080291970802, 0.030656934306569343, 0.026277372262773723, 0.026277372262773723, 0.026277372262773723, 0.026277372262773723, 0.027737226277372264, 0.032116788321167884, 0.0364963503649635, 0.072992700729927, 0.07737226277372262, 0.08905109489051095, 0.11532846715328467, 0.181021897810219, 0.16058394160583941, 0.1591240875912409, 0.16204379562043797, 0.1635036496350365, 0.1927007299270073, 0.20145985401459854, 0.19562043795620437, 0.9153284671532846, 0.19416058394160585, 0.18394160583941604, 0.1781021897810219, 0.181021897810219, 0.1781021897810219, 0.17664233576642335, 0.17956204379562044, 0.181021897810219, 0.18686131386861313, 0.20875912408759123, 0.23357664233576642, 0.2613138686131387, 0.27153284671532846, 0.29781021897810217, 0.35912408759124087, 0.3372262773722628, 0.3343065693430657, 0.3386861313868613, 0.3445255474452555, 0.35474452554744523, 0.362043795620438, 0.3678832116788321, 0.37372262773722625, 0.3795620437956204, 0.3854014598540146, 0.40145985401459855, 0.4467153284671533, 0.5576642335766423, 0.8379562043795621], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Band_3_cyto.gap.json b/pfam_gap_rates/Band_3_cyto.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..179cb2a43fccb68ae956910ec3eecaf6a6e8bded
--- /dev/null
+++ b/pfam_gap_rates/Band_3_cyto.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Band_7_1.gap.json b/pfam_gap_rates/Band_7_1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d6e89187f0875dc49d70ef97eab97a800bc11028
--- /dev/null
+++ b/pfam_gap_rates/Band_7_1.gap.json
@@ -0,0 +1 @@
+{"family": "Band_7_1", "n_seqs": 559, "length": 261, "gap_rates": [0.6171735241502684, 0.46332737030411447, 0.4561717352415027, 0.43828264758497315, 0.4293381037567084, 0.5760286225402504, 0.5384615384615384, 0.2182468694096601, 0.16815742397137745, 0.13595706618962433, 0.08050089445438283, 0.07692307692307693, 0.07334525939177101, 0.06976744186046512, 0.06797853309481217, 0.06618962432915922, 0.0626118067978533, 0.06082289803220036, 0.059033989266547404, 0.059033989266547404, 0.059033989266547404, 0.059033989266547404, 0.059033989266547404, 0.059033989266547404, 0.059033989266547404, 0.059033989266547404, 0.057245080500894455, 0.057245080500894455, 0.057245080500894455, 0.055456171735241505, 0.055456171735241505, 0.055456171735241505, 0.057245080500894455, 0.055456171735241505, 0.05366726296958855, 0.055456171735241505, 0.05366726296958855, 0.7674418604651163, 0.05366726296958855, 0.8908765652951699, 0.05366726296958855, 0.05366726296958855, 0.05366726296958855, 0.05366726296958855, 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\ No newline at end of file
diff --git a/pfam_gap_rates/Baseplate_J.gap.json b/pfam_gap_rates/Baseplate_J.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..65352ab98d1d03169b917bbedfa89b74e2949799
--- /dev/null
+++ b/pfam_gap_rates/Baseplate_J.gap.json
@@ -0,0 +1 @@
+{"family": "Baseplate_J", "n_seqs": 819, "length": 316, "gap_rates": [0.9352869352869353, 0.6373626373626373, 0.5775335775335775, 0.5494505494505495, 0.5347985347985348, 0.525030525030525, 0.5201465201465202, 0.5164835164835165, 0.5152625152625152, 0.5653235653235653, 0.5152625152625152, 0.8852258852258852, 0.5323565323565324, 0.4945054945054945, 0.4945054945054945, 0.48473748473748474, 0.47741147741147744, 0.47496947496947495, 0.46642246642246643, 0.4542124542124542, 0.43223443223443225, 0.42124542124542125, 0.42124542124542125, 0.42124542124542125, 0.42002442002442003, 0.42002442002442003, 0.42002442002442003, 0.4188034188034188, 0.4175824175824176, 0.4175824175824176, 0.4175824175824176, 0.4175824175824176, 0.43956043956043955, 0.463980463980464, 0.6874236874236874, 0.8327228327228328, 0.7887667887667887, 0.673992673992674, 0.4542124542124542, 0.4371184371184371, 0.4139194139194139, 0.4126984126984127, 0.41025641025641024, 0.41147741147741146, 0.41025641025641024, 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\ No newline at end of file
diff --git a/pfam_gap_rates/BaxI_1.gap.json b/pfam_gap_rates/BaxI_1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..37e5312f97cfc7c067d4490536abbdd2235094c7
--- /dev/null
+++ b/pfam_gap_rates/BaxI_1.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/BetaGal_dom2.gap.json b/pfam_gap_rates/BetaGal_dom2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..60c92fe5d9a88a0772c629874d259427219b642c
--- /dev/null
+++ b/pfam_gap_rates/BetaGal_dom2.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Beta_propel.gap.json b/pfam_gap_rates/Beta_propel.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f9937ffcef153f1bf504c0fb41b08bf912c513aa
--- /dev/null
+++ b/pfam_gap_rates/Beta_propel.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Bile_Hydr_Trans.gap.json b/pfam_gap_rates/Bile_Hydr_Trans.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..619c7d0f25496478fbe87ad5c82c08ad7e1aa38b
--- /dev/null
+++ b/pfam_gap_rates/Bile_Hydr_Trans.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Bmt2.gap.json b/pfam_gap_rates/Bmt2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..22caa27b7e4e38d2861916eb41858e4d374e9136
--- /dev/null
+++ b/pfam_gap_rates/Bmt2.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/BrkDBD.gap.json b/pfam_gap_rates/BrkDBD.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b8bb013177079054c60cba015742b5b38a3e0d1d
--- /dev/null
+++ b/pfam_gap_rates/BrkDBD.gap.json
@@ -0,0 +1 @@
+{"family": "BrkDBD", "n_seqs": 110, "length": 58, "gap_rates": [0.7363636363636363, 0.7181818181818181, 0.19090909090909092, 0.15454545454545454, 0.045454545454545456, 0.01818181818181818, 0.01818181818181818, 0.00909090909090909, 0.00909090909090909, 0.00909090909090909, 0.00909090909090909, 0.00909090909090909, 0.00909090909090909, 0.0, 0.0, 0.0, 0.0, 0.0, 0.00909090909090909, 0.03636363636363636, 0.03636363636363636, 0.02727272727272727, 0.05454545454545454, 0.17272727272727273, 0.16363636363636364, 0.7090909090909091, 0.6909090909090909, 0.6454545454545455, 0.5, 0.5, 0.01818181818181818, 0.00909090909090909, 0.00909090909090909, 0.00909090909090909, 0.00909090909090909, 0.00909090909090909, 0.00909090909090909, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.00909090909090909, 0.0, 0.0, 0.0, 0.0, 0.0, 0.01818181818181818, 0.02727272727272727, 0.045454545454545456, 0.16363636363636364, 0.37272727272727274, 0.6363636363636364, 0.7272727272727273, 0.8181818181818182, 0.8818181818181818], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Bro-N.gap.json b/pfam_gap_rates/Bro-N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..fd8cd790a01b8e86d8a796dafecc59c1590c6824
--- /dev/null
+++ b/pfam_gap_rates/Bro-N.gap.json
@@ -0,0 +1 @@
+{"family": "Bro-N", "n_seqs": 865, "length": 120, "gap_rates": [0.6832369942196532, 0.28439306358381505, 0.23468208092485549, 0.1838150289017341, 0.15606936416184972, 0.15722543352601157, 0.8473988439306358, 0.638150289017341, 0.06473988439306358, 0.04277456647398844, 0.03699421965317919, 0.03352601156069364, 0.026589595375722544, 0.026589595375722544, 0.027745664739884393, 0.03005780346820809, 0.09826589595375723, 0.023121387283236993, 0.021965317919075144, 0.021965317919075144, 0.021965317919075144, 0.021965317919075144, 0.021965317919075144, 0.020809248554913295, 0.9017341040462428, 0.12485549132947976, 0.11445086705202312, 0.03699421965317919, 0.03005780346820809, 0.024277456647398842, 0.27167630057803466, 0.7803468208092486, 0.8508670520231214, 0.922543352601156, 0.884393063583815, 0.7815028901734105, 0.7710982658959538, 0.028901734104046242, 0.017341040462427744, 0.07283236994219654, 0.15028901734104047, 0.017341040462427744, 0.018497109826589597, 0.016184971098265895, 0.017341040462427744, 0.017341040462427744, 0.021965317919075144, 0.025433526011560695, 0.027745664739884393, 0.15260115606936417, 0.10173410404624278, 0.057803468208092484, 0.2046242774566474, 0.1630057803468208, 0.28439306358381505, 0.3017341040462428, 0.31213872832369943, 0.36647398843930634, 0.42890173410404625, 0.3815028901734104, 0.522543352601156, 0.7433526011560694, 0.7953757225433526, 0.8393063583815029, 0.9283236994219654, 0.945664739884393, 0.8439306358381503, 0.8277456647398844, 0.7734104046242775, 0.5445086705202312, 0.4751445086705202, 0.3236994219653179, 0.1791907514450867, 0.1260115606936416, 0.08439306358381503, 0.07052023121387284, 0.07283236994219654, 0.08092485549132948, 0.3791907514450867, 0.35722543352601155, 0.018497109826589597, 0.884393063583815, 0.9398843930635838, 0.9479768786127167, 0.9433526011560693, 0.9352601156069364, 0.8820809248554913, 0.018497109826589597, 0.017341040462427744, 0.017341040462427744, 0.017341040462427744, 0.016184971098265895, 0.017341040462427744, 0.018497109826589597, 0.018497109826589597, 0.018497109826589597, 0.019653179190751446, 0.020809248554913295, 0.023121387283236993, 0.025433526011560695, 0.026589595375722544, 0.027745664739884393, 0.028901734104046242, 0.03005780346820809, 0.03121387283236994, 0.03121387283236994, 0.03236994219653179, 0.06127167630057803, 0.08323699421965318, 0.10635838150289018, 0.13988439306358383, 0.15260115606936417, 0.15838150289017341, 0.1606936416184971, 0.16878612716763006, 0.28439306358381505, 0.49942196531791905, 0.5283236994219653, 0.5352601156069364, 0.545664739884393], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/BtpA.gap.json b/pfam_gap_rates/BtpA.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..6e456a6d51b00f5bec98bbde65b1d1cd43bfe094
--- /dev/null
+++ b/pfam_gap_rates/BtpA.gap.json
@@ -0,0 +1 @@
+{"family": "BtpA", "n_seqs": 328, "length": 264, "gap_rates": [0.8689024390243902, 0.4878048780487805, 0.3323170731707317, 0.23170731707317074, 0.1402439024390244, 0.12195121951219512, 0.12195121951219512, 0.11280487804878049, 0.11280487804878049, 0.11280487804878049, 0.11280487804878049, 0.11280487804878049, 0.12195121951219512, 0.13414634146341464, 0.13719512195121952, 0.13414634146341464, 0.12804878048780488, 0.13109756097560976, 0.13109756097560976, 0.1402439024390244, 0.14329268292682926, 0.18292682926829268, 0.7652439024390244, 0.600609756097561, 0.11280487804878049, 0.10365853658536585, 0.09451219512195122, 0.09451219512195122, 0.09451219512195122, 0.09146341463414634, 0.08536585365853659, 0.08536585365853659, 0.08536585365853659, 0.08536585365853659, 0.08536585365853659, 0.08536585365853659, 0.08536585365853659, 0.08536585365853659, 0.08536585365853659, 0.08536585365853659, 0.08536585365853659, 0.08536585365853659, 0.08841463414634146, 0.08231707317073171, 0.08231707317073171, 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\ No newline at end of file
diff --git a/pfam_gap_rates/Btz.gap.json b/pfam_gap_rates/Btz.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c42f6b54e95c9f79314865ce36e6cfb3d2e2a29a
--- /dev/null
+++ b/pfam_gap_rates/Btz.gap.json
@@ -0,0 +1 @@
+{"family": "Btz", "n_seqs": 282, "length": 170, "gap_rates": [0.8652482269503546, 0.8085106382978723, 0.7730496453900709, 0.74822695035461, 0.7127659574468085, 0.7021276595744681, 0.6808510638297872, 0.7092198581560284, 0.6914893617021277, 0.6028368794326241, 0.5567375886524822, 0.5035460992907801, 0.4787234042553192, 0.4078014184397163, 0.37943262411347517, 0.3404255319148936, 0.3120567375886525, 0.29432624113475175, 0.2730496453900709, 0.8156028368794326, 0.6808510638297872, 0.16312056737588654, 0.14184397163120568, 0.13120567375886524, 0.13120567375886524, 0.10283687943262411, 0.09219858156028368, 0.09219858156028368, 0.09219858156028368, 0.08156028368794327, 0.07092198581560284, 0.0673758865248227, 0.05673758865248227, 0.05319148936170213, 0.05319148936170213, 0.05319148936170213, 0.04609929078014184, 0.04609929078014184, 0.03900709219858156, 0.03900709219858156, 0.03900709219858156, 0.03900709219858156, 0.03900709219858156, 0.03900709219858156, 0.03900709219858156, 0.03900709219858156, 0.03900709219858156, 0.03900709219858156, 0.03900709219858156, 0.0425531914893617, 0.028368794326241134, 0.028368794326241134, 0.02127659574468085, 0.02127659574468085, 0.02127659574468085, 0.02127659574468085, 0.02127659574468085, 0.06382978723404255, 0.05319148936170213, 0.04964539007092199, 0.19858156028368795, 0.10638297872340426, 0.22695035460992907, 0.1879432624113475, 0.22695035460992907, 0.38652482269503546, 0.9148936170212766, 0.9468085106382979, 0.9113475177304965, 0.4716312056737589, 0.5319148936170213, 0.5141843971631206, 0.46808510638297873, 0.875886524822695, 0.925531914893617, 0.6985815602836879, 0.41134751773049644, 0.2375886524822695, 0.23404255319148937, 0.23049645390070922, 0.1950354609929078, 0.6737588652482269, 0.6950354609929078, 0.7624113475177305, 0.8085106382978723, 0.8404255319148937, 0.8652482269503546, 0.8900709219858156, 0.9078014184397163, 0.9219858156028369, 0.9361702127659575, 0.9361702127659575, 0.925531914893617, 0.9148936170212766, 0.8936170212765957, 0.875886524822695, 0.8617021276595744, 0.8368794326241135, 0.7730496453900709, 0.7198581560283688, 0.6843971631205674, 0.6631205673758865, 0.4858156028368794, 0.6347517730496454, 0.6170212765957447, 0.574468085106383, 0.5638297872340425, 0.549645390070922, 0.41134751773049644, 0.7411347517730497, 0.7730496453900709, 0.8226950354609929, 0.8652482269503546, 0.9078014184397163, 0.925531914893617, 0.9397163120567376, 0.9432624113475178, 0.9361702127659575, 0.9148936170212766, 0.8865248226950354, 0.8404255319148937, 0.7836879432624113, 0.7553191489361702, 0.7269503546099291, 0.450354609929078, 0.1595744680851064, 0.10283687943262411, 0.08865248226950355, 0.08156028368794327, 0.0851063829787234, 0.0851063829787234, 0.0851063829787234, 0.07801418439716312, 0.28368794326241137, 0.1950354609929078, 0.07446808510638298, 0.0673758865248227, 0.0673758865248227, 0.0673758865248227, 0.0673758865248227, 0.0673758865248227, 0.0673758865248227, 0.0673758865248227, 0.0673758865248227, 0.0673758865248227, 0.40070921985815605, 0.38652482269503546, 0.0851063829787234, 0.08865248226950355, 0.11702127659574468, 0.1595744680851064, 0.1773049645390071, 0.1950354609929078, 0.2624113475177305, 0.41843971631205673, 0.3723404255319149, 0.34397163120567376, 0.3617021276595745, 0.375886524822695, 0.40425531914893614, 0.44680851063829785, 0.46099290780141844, 0.4929078014184397, 0.5141843971631206, 0.5177304964539007, 0.5390070921985816, 0.549645390070922, 0.5638297872340425, 0.6524822695035462, 0.8014184397163121], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/C2.gap.json b/pfam_gap_rates/C2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..603909c734855387acfe7ab635e9e9508f10001c
--- /dev/null
+++ b/pfam_gap_rates/C2.gap.json
@@ -0,0 +1 @@
+{"family": "C2", "n_seqs": 5000, "length": 135, "gap_rates": [0.7926, 0.437, 0.2468, 0.2136, 0.1918, 0.1842, 0.1742, 0.1488, 0.132, 0.1264, 0.1224, 0.1206, 0.118, 0.1192, 0.116, 0.113, 0.252, 0.221, 0.8834, 0.9296, 0.9492, 0.9062, 0.8156, 0.1724, 0.1632, 0.1, 0.943, 0.9454, 0.941, 0.073, 0.0644, 0.0602, 0.057, 0.0554, 0.0542, 0.054, 0.054, 0.0528, 0.606, 0.719, 0.919, 0.8678, 0.695, 0.5572, 0.3864, 0.0542, 0.0506, 0.0478, 0.044, 0.0426, 0.0406, 0.0394, 0.0394, 0.0716, 0.0416, 0.893, 0.037, 0.0368, 0.0388, 0.0946, 0.0428, 0.035, 0.0304, 0.0298, 0.0526, 0.0338, 0.0314, 0.0316, 0.0316, 0.0318, 0.9382, 0.0394, 0.0386, 0.0402, 0.0402, 0.6548, 0.8704, 0.9456, 0.9324, 0.8006, 0.5848, 0.3144, 0.0972, 0.0414, 0.0392, 0.038, 0.0386, 0.0396, 0.0404, 0.041, 0.042, 0.044, 0.0442, 0.0524, 0.0568, 0.0586, 0.9012, 0.9256, 0.9468, 0.9108, 0.8902, 0.2572, 0.946, 0.1022, 0.0898, 0.0796, 0.0686, 0.9424, 0.0738, 0.0676, 0.0676, 0.0696, 0.0736, 0.081, 0.0868, 0.095, 0.1134, 0.1214, 0.132, 0.9018, 0.9332, 0.8456, 0.2836, 0.3112, 0.307, 0.352, 0.4188, 0.4804, 0.5272, 0.5648, 0.6016, 0.6294, 0.6626, 0.7182, 0.7932], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/CAP_N.gap.json b/pfam_gap_rates/CAP_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..0ce9722db6d20c8b253278d04f930468cf076e31
--- /dev/null
+++ b/pfam_gap_rates/CAP_N.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/CBFB_NFYA.gap.json b/pfam_gap_rates/CBFB_NFYA.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a4c66da11904b5e38778d0115d34bb1801e15e63
--- /dev/null
+++ b/pfam_gap_rates/CBFB_NFYA.gap.json
@@ -0,0 +1 @@
+{"family": "CBFB_NFYA", "n_seqs": 524, "length": 57, "gap_rates": [0.3511450381679389, 0.07251908396946564, 0.03816793893129771, 0.03435114503816794, 0.02099236641221374, 0.02099236641221374, 0.02099236641221374, 0.02099236641221374, 0.02099236641221374, 0.019083969465648856, 0.01717557251908397, 0.01717557251908397, 0.01717557251908397, 0.013358778625954198, 0.013358778625954198, 0.011450381679389313, 0.011450381679389313, 0.011450381679389313, 0.009541984732824428, 0.009541984732824428, 0.009541984732824428, 0.009541984732824428, 0.011450381679389313, 0.013358778625954198, 0.011450381679389313, 0.02480916030534351, 0.03625954198473282, 0.02862595419847328, 0.02480916030534351, 0.851145038167939, 0.03625954198473282, 0.03435114503816794, 0.030534351145038167, 0.03816793893129771, 0.03244274809160305, 0.03435114503816794, 0.04007633587786259, 0.04007633587786259, 0.04007633587786259, 0.04198473282442748, 0.04198473282442748, 0.04198473282442748, 0.04198473282442748, 0.04198473282442748, 0.04198473282442748, 0.04389312977099236, 0.04389312977099236, 0.04389312977099236, 0.04389312977099236, 0.04389312977099236, 0.04389312977099236, 0.04580152671755725, 0.04389312977099236, 0.04580152671755725, 0.04770992366412214, 0.05152671755725191, 0.05152671755725191], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/CDC37_N.gap.json b/pfam_gap_rates/CDC37_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c74f37a524b97b458b4b00826147e9677d9512e9
--- /dev/null
+++ b/pfam_gap_rates/CDC37_N.gap.json
@@ -0,0 +1 @@
+{"family": "CDC37_N", "n_seqs": 253, "length": 153, "gap_rates": [0.233201581027668, 0.10276679841897234, 0.07509881422924901, 0.06719367588932806, 0.06324110671936758, 0.05928853754940711, 0.05928853754940711, 0.04743083003952569, 0.03557312252964427, 0.03162055335968379, 0.02766798418972332, 0.02766798418972332, 0.019762845849802372, 0.019762845849802372, 0.019762845849802372, 0.019762845849802372, 0.023715415019762844, 0.4189723320158103, 0.023715415019762844, 0.011857707509881422, 0.011857707509881422, 0.011857707509881422, 0.007905138339920948, 0.007905138339920948, 0.007905138339920948, 0.011857707509881422, 0.011857707509881422, 0.011857707509881422, 0.011857707509881422, 0.011857707509881422, 0.011857707509881422, 0.011857707509881422, 0.011857707509881422, 0.21739130434782608, 0.22134387351778656, 0.21739130434782608, 0.21739130434782608, 0.011857707509881422, 0.011857707509881422, 0.011857707509881422, 0.015810276679841896, 0.015810276679841896, 0.011857707509881422, 0.011857707509881422, 0.011857707509881422, 0.011857707509881422, 0.011857707509881422, 0.011857707509881422, 0.015810276679841896, 0.011857707509881422, 0.015810276679841896, 0.007905138339920948, 0.007905138339920948, 0.011857707509881422, 0.9288537549407114, 0.9288537549407114, 0.9288537549407114, 0.9288537549407114, 0.8458498023715415, 0.09881422924901186, 0.09486166007905138, 0.04743083003952569, 0.03162055335968379, 0.03557312252964427, 0.039525691699604744, 0.03162055335968379, 0.023715415019762844, 0.011857707509881422, 0.011857707509881422, 0.019762845849802372, 0.015810276679841896, 0.007905138339920948, 0.011857707509881422, 0.011857707509881422, 0.015810276679841896, 0.023715415019762844, 0.10276679841897234, 0.07509881422924901, 0.06719367588932806, 0.04743083003952569, 0.019762845849802372, 0.015810276679841896, 0.019762845849802372, 0.019762845849802372, 0.5928853754940712, 0.7272727272727273, 0.8932806324110671, 0.932806324110672, 0.9486166007905138, 0.9090909090909091, 0.7509881422924901, 0.6561264822134387, 0.5019762845849802, 0.26877470355731226, 0.2450592885375494, 0.16205533596837945, 0.1225296442687747, 0.043478260869565216, 0.043478260869565216, 0.039525691699604744, 0.02766798418972332, 0.02766798418972332, 0.02766798418972332, 0.03557312252964427, 0.03557312252964427, 0.43478260869565216, 0.20948616600790515, 0.11462450592885376, 0.09881422924901186, 0.1541501976284585, 0.11462450592885376, 0.07509881422924901, 0.07114624505928854, 0.07114624505928854, 0.08300395256916997, 0.09881422924901186, 0.12648221343873517, 0.18972332015810275, 0.9486166007905138, 0.9486166007905138, 0.48221343873517786, 0.6561264822134387, 0.6877470355731226, 0.7944664031620553, 0.9367588932806324, 0.7154150197628458, 0.6600790513833992, 0.6482213438735178, 0.4308300395256917, 0.841897233201581, 0.308300395256917, 0.2964426877470356, 0.3241106719367589, 0.34782608695652173, 0.36363636363636365, 0.383399209486166, 0.39920948616600793, 0.4268774703557312, 0.44664031620553357, 0.44664031620553357, 0.45454545454545453, 0.45849802371541504, 0.45849802371541504, 0.4624505928853755, 0.4624505928853755, 0.4624505928853755, 0.4624505928853755, 0.4624505928853755, 0.466403162055336, 0.4782608695652174, 0.5019762845849802, 0.5454545454545454, 0.7628458498023716], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/CDC73_C.gap.json b/pfam_gap_rates/CDC73_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ed9d4b9c4f918316e9d40bcfb5013cea32cba53a
--- /dev/null
+++ b/pfam_gap_rates/CDC73_C.gap.json
@@ -0,0 +1 @@
+{"family": "CDC73_C", "n_seqs": 327, "length": 198, "gap_rates": [0.8409785932721713, 0.4036697247706422, 0.28134556574923547, 0.1345565749235474, 0.10397553516819572, 0.09480122324159021, 0.07951070336391437, 0.07339449541284404, 0.07339449541284404, 0.07339449541284404, 0.07339449541284404, 0.07339449541284404, 0.07339449541284404, 0.07033639143730887, 0.07033639143730887, 0.0672782874617737, 0.0672782874617737, 0.0672782874617737, 0.0672782874617737, 0.0672782874617737, 0.0672782874617737, 0.0672782874617737, 0.0672782874617737, 0.06422018348623854, 0.06422018348623854, 0.06116207951070336, 0.06422018348623854, 0.0672782874617737, 0.0581039755351682, 0.05198776758409786, 0.04892966360856269, 0.04892966360856269, 0.04892966360856269, 0.045871559633027525, 0.045871559633027525, 0.045871559633027525, 0.045871559633027525, 0.045871559633027525, 0.045871559633027525, 0.045871559633027525, 0.05504587155963303, 0.3516819571865443, 0.8256880733944955, 0.9021406727828746, 0.9174311926605505, 0.8807339449541285, 0.7675840978593272, 0.3058103975535168, 0.2415902140672783, 0.18960244648318042, 0.10091743119266056, 0.05504587155963303, 0.04892966360856269, 0.04892966360856269, 0.039755351681957186, 0.039755351681957186, 0.03669724770642202, 0.36085626911314983, 0.3394495412844037, 0.13149847094801223, 0.1620795107033639, 0.41590214067278286, 0.3211009174311927, 0.1834862385321101, 0.746177370030581, 0.764525993883792, 0.8929663608562691, 0.9051987767584098, 0.9143730886850153, 0.9296636085626911, 0.9357798165137615, 0.944954128440367, 0.9327217125382263, 0.926605504587156, 0.9143730886850153, 0.8960244648318043, 0.7859327217125383, 0.7553516819571865, 0.7370030581039755, 0.11314984709480122, 0.06116207951070336, 0.0581039755351682, 0.04892966360856269, 0.04281345565749235, 0.04281345565749235, 0.04281345565749235, 0.04281345565749235, 0.045871559633027525, 0.039755351681957186, 0.04281345565749235, 0.04281345565749235, 0.045871559633027525, 0.045871559633027525, 0.045871559633027525, 0.07951070336391437, 0.07033639143730887, 0.8837920489296636, 0.8868501529051988, 0.8195718654434251, 0.039755351681957186, 0.039755351681957186, 0.03669724770642202, 0.03669724770642202, 0.03669724770642202, 0.03669724770642202, 0.03669724770642202, 0.03669724770642202, 0.03669724770642202, 0.03363914373088685, 0.03669724770642202, 0.03669724770642202, 0.039755351681957186, 0.039755351681957186, 0.04281345565749235, 0.04281345565749235, 0.04281345565749235, 0.04281345565749235, 0.04281345565749235, 0.039755351681957186, 0.039755351681957186, 0.039755351681957186, 0.039755351681957186, 0.8470948012232415, 0.8776758409785933, 0.8685015290519877, 0.6605504587155964, 0.039755351681957186, 0.04281345565749235, 0.039755351681957186, 0.039755351681957186, 0.039755351681957186, 0.039755351681957186, 0.03669724770642202, 0.03669724770642202, 0.03058103975535168, 0.03058103975535168, 0.03363914373088685, 0.03363914373088685, 0.03058103975535168, 0.03058103975535168, 0.03058103975535168, 0.03058103975535168, 0.03058103975535168, 0.03058103975535168, 0.03058103975535168, 0.03058103975535168, 0.9143730886850153, 0.9021406727828746, 0.03058103975535168, 0.03363914373088685, 0.03669724770642202, 0.06116207951070336, 0.05504587155963303, 0.045871559633027525, 0.04892966360856269, 0.04892966360856269, 0.04892966360856269, 0.05198776758409786, 0.8165137614678899, 0.8103975535168195, 0.05198776758409786, 0.05198776758409786, 0.05198776758409786, 0.05198776758409786, 0.05198776758409786, 0.05504587155963303, 0.05504587155963303, 0.06116207951070336, 0.8195718654434251, 0.8287461773700305, 0.8409785932721713, 0.8929663608562691, 0.9357798165137615, 0.9021406727828746, 0.8470948012232415, 0.8318042813455657, 0.8256880733944955, 0.8012232415902141, 0.11009174311926606, 0.0764525993883792, 0.06422018348623854, 0.06422018348623854, 0.0672782874617737, 0.0672782874617737, 0.0672782874617737, 0.0672782874617737, 0.0672782874617737, 0.07033639143730887, 0.07033639143730887, 0.07339449541284404, 0.07339449541284404, 0.07339449541284404, 0.07339449541284404, 0.07339449541284404, 0.0764525993883792, 0.10703363914373089, 0.2018348623853211, 0.6574923547400612], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/CDK2AP.gap.json b/pfam_gap_rates/CDK2AP.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..75967f6bca4707398c1dbc7d384303b94720d335
--- /dev/null
+++ b/pfam_gap_rates/CDK2AP.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/CDK5_activator.gap.json b/pfam_gap_rates/CDK5_activator.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..9328262196024f5e6f91c5bf7d2b674ef38fa743
--- /dev/null
+++ b/pfam_gap_rates/CDK5_activator.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/CENP-L.gap.json b/pfam_gap_rates/CENP-L.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..1530d2d605c6628602dadc397040e542dfb86bee
--- /dev/null
+++ b/pfam_gap_rates/CENP-L.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/CGGC.gap.json b/pfam_gap_rates/CGGC.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..3c4acb522042d7b57900430af33ccf45a08cbc4a
--- /dev/null
+++ b/pfam_gap_rates/CGGC.gap.json
@@ -0,0 +1 @@
+{"family": "CGGC", "n_seqs": 181, "length": 133, "gap_rates": [0.20441988950276244, 0.055248618784530384, 0.049723756906077346, 0.049723756906077346, 0.049723756906077346, 0.049723756906077346, 0.049723756906077346, 0.049723756906077346, 0.049723756906077346, 0.049723756906077346, 0.03867403314917127, 0.03867403314917127, 0.8232044198895028, 0.9281767955801105, 0.712707182320442, 0.18232044198895028, 0.03867403314917127, 0.03867403314917127, 0.03314917127071823, 0.7900552486187845, 0.03314917127071823, 0.03314917127071823, 0.03314917127071823, 0.027624309392265192, 0.022099447513812154, 0.022099447513812154, 0.022099447513812154, 0.022099447513812154, 0.022099447513812154, 0.022099447513812154, 0.022099447513812154, 0.022099447513812154, 0.022099447513812154, 0.022099447513812154, 0.022099447513812154, 0.0718232044198895, 0.0718232044198895, 0.07734806629834254, 0.8729281767955801, 0.5193370165745856, 0.22099447513812154, 0.03314917127071823, 0.027624309392265192, 0.022099447513812154, 0.022099447513812154, 0.016574585635359115, 0.016574585635359115, 0.016574585635359115, 0.06629834254143646, 0.016574585635359115, 0.016574585635359115, 0.011049723756906077, 0.13259668508287292, 0.06077348066298342, 0.7403314917127072, 0.7955801104972375, 0.8729281767955801, 0.7513812154696132, 0.7403314917127072, 0.06077348066298342, 0.06077348066298342, 0.06077348066298342, 0.022099447513812154, 0.011049723756906077, 0.0055248618784530384, 0.0055248618784530384, 0.0055248618784530384, 0.0055248618784530384, 0.0055248618784530384, 0.011049723756906077, 0.011049723756906077, 0.0055248618784530384, 0.7734806629834254, 0.8342541436464088, 0.850828729281768, 0.9281767955801105, 0.9447513812154696, 0.9281767955801105, 0.8397790055248618, 0.7734806629834254, 0.7182320441988951, 0.0055248618784530384, 0.011049723756906077, 0.0055248618784530384, 0.011049723756906077, 0.011049723756906077, 0.011049723756906077, 0.011049723756906077, 0.011049723756906077, 0.011049723756906077, 0.011049723756906077, 0.011049723756906077, 0.011049723756906077, 0.011049723756906077, 0.9447513812154696, 0.9171270718232044, 0.36464088397790057, 0.574585635359116, 0.5524861878453039, 0.6961325966850829, 0.2983425414364641, 0.292817679558011, 0.027624309392265192, 0.027624309392265192, 0.016574585635359115, 0.016574585635359115, 0.016574585635359115, 0.016574585635359115, 0.016574585635359115, 0.9060773480662984, 0.861878453038674, 0.016574585635359115, 0.016574585635359115, 0.016574585635359115, 0.016574585635359115, 0.016574585635359115, 0.016574585635359115, 0.016574585635359115, 0.016574585635359115, 0.016574585635359115, 0.016574585635359115, 0.30386740331491713, 0.8674033149171271, 0.7845303867403315, 0.08287292817679558, 0.022099447513812154, 0.027624309392265192, 0.027624309392265192, 0.027624309392265192, 0.03314917127071823, 0.049723756906077346, 0.049723756906077346, 0.143646408839779], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/CHB_HEX_C.gap.json b/pfam_gap_rates/CHB_HEX_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..02029a6087bcd111eec82d742c8f904a3dadf6a5
--- /dev/null
+++ b/pfam_gap_rates/CHB_HEX_C.gap.json
@@ -0,0 +1 @@
+{"family": "CHB_HEX_C", "n_seqs": 108, "length": 82, "gap_rates": [0.24074074074074073, 0.1111111111111111, 0.08333333333333333, 0.08333333333333333, 0.07407407407407407, 0.06481481481481481, 0.7592592592592593, 0.7592592592592593, 0.06481481481481481, 0.037037037037037035, 0.027777777777777776, 0.027777777777777776, 0.027777777777777776, 0.027777777777777776, 0.027777777777777776, 0.027777777777777776, 0.018518518518518517, 0.018518518518518517, 0.018518518518518517, 0.018518518518518517, 0.018518518518518517, 0.009259259259259259, 0.018518518518518517, 0.009259259259259259, 0.009259259259259259, 0.018518518518518517, 0.018518518518518517, 0.009259259259259259, 0.009259259259259259, 0.009259259259259259, 0.009259259259259259, 0.009259259259259259, 0.009259259259259259, 0.009259259259259259, 0.009259259259259259, 0.009259259259259259, 0.009259259259259259, 0.009259259259259259, 0.009259259259259259, 0.009259259259259259, 0.009259259259259259, 0.009259259259259259, 0.009259259259259259, 0.009259259259259259, 0.1111111111111111, 0.018518518518518517, 0.009259259259259259, 0.12037037037037036, 0.009259259259259259, 0.009259259259259259, 0.009259259259259259, 0.018518518518518517, 0.018518518518518517, 0.3333333333333333, 0.3055555555555556, 0.48148148148148145, 0.037037037037037035, 0.037037037037037035, 0.046296296296296294, 0.018518518518518517, 0.027777777777777776, 0.027777777777777776, 0.027777777777777776, 0.8425925925925926, 0.75, 0.2222222222222222, 0.05555555555555555, 0.046296296296296294, 0.05555555555555555, 0.05555555555555555, 0.05555555555555555, 0.07407407407407407, 0.10185185185185185, 0.14814814814814814, 0.14814814814814814, 0.12962962962962962, 0.4722222222222222, 0.18518518518518517, 0.19444444444444445, 0.2222222222222222, 0.2962962962962963, 0.5370370370370371], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/CLAMP.gap.json b/pfam_gap_rates/CLAMP.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e74285d968b280b1b2594db0e5db944abaf811fc
--- /dev/null
+++ b/pfam_gap_rates/CLAMP.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/CLU_N.gap.json b/pfam_gap_rates/CLU_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..fb811cfdf9f06c6ee5d75e6ebc456706bd7d3fc0
--- /dev/null
+++ b/pfam_gap_rates/CLU_N.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/CNDH2_N.gap.json b/pfam_gap_rates/CNDH2_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..984e0955976c27af7b1fe6c166de92d527264e21
--- /dev/null
+++ b/pfam_gap_rates/CNDH2_N.gap.json
@@ -0,0 +1 @@
+{"family": "CNDH2_N", "n_seqs": 129, "length": 127, "gap_rates": [0.4418604651162791, 0.1937984496124031, 0.15503875968992248, 0.15503875968992248, 0.14728682170542637, 0.13178294573643412, 0.13178294573643412, 0.13178294573643412, 0.12403100775193798, 0.13953488372093023, 0.13178294573643412, 0.11627906976744186, 0.10852713178294573, 0.10852713178294573, 0.10852713178294573, 0.10852713178294573, 0.10852713178294573, 0.10852713178294573, 0.10852713178294573, 0.10077519379844961, 0.10077519379844961, 0.10077519379844961, 0.09302325581395349, 0.09302325581395349, 0.10077519379844961, 0.08527131782945736, 0.08527131782945736, 0.8372093023255814, 0.10852713178294573, 0.10852713178294573, 0.11627906976744186, 0.12403100775193798, 0.11627906976744186, 0.10852713178294573, 0.09302325581395349, 0.9147286821705426, 0.09302325581395349, 0.8217054263565892, 0.9069767441860465, 0.9147286821705426, 0.9302325581395349, 0.9457364341085271, 0.9302325581395349, 0.9147286821705426, 0.8294573643410853, 0.8217054263565892, 0.13178294573643412, 0.15503875968992248, 0.10852713178294573, 0.09302325581395349, 0.06976744186046512, 0.9457364341085271, 0.9224806201550387, 0.031007751937984496, 0.031007751937984496, 0.031007751937984496, 0.031007751937984496, 0.031007751937984496, 0.023255813953488372, 0.015503875968992248, 0.015503875968992248, 0.015503875968992248, 0.015503875968992248, 0.015503875968992248, 0.015503875968992248, 0.015503875968992248, 0.015503875968992248, 0.015503875968992248, 0.015503875968992248, 0.015503875968992248, 0.015503875968992248, 0.015503875968992248, 0.015503875968992248, 0.023255813953488372, 0.031007751937984496, 0.031007751937984496, 0.031007751937984496, 0.031007751937984496, 0.031007751937984496, 0.03875968992248062, 0.03875968992248062, 0.03875968992248062, 0.03875968992248062, 0.03875968992248062, 0.03875968992248062, 0.03875968992248062, 0.03875968992248062, 0.03875968992248062, 0.03875968992248062, 0.03875968992248062, 0.03875968992248062, 0.03875968992248062, 0.046511627906976744, 0.937984496124031, 0.20155038759689922, 0.10077519379844961, 0.10077519379844961, 0.10077519379844961, 0.10077519379844961, 0.09302325581395349, 0.10852713178294573, 0.11627906976744186, 0.14728682170542637, 0.20155038759689922, 0.21705426356589147, 0.20155038759689922, 0.23255813953488372, 0.26356589147286824, 0.2713178294573643, 0.8449612403100775, 0.4186046511627907, 0.40310077519379844, 0.40310077519379844, 0.3875968992248062, 0.40310077519379844, 0.4108527131782946, 0.4263565891472868, 0.43410852713178294, 0.4263565891472868, 0.43410852713178294, 0.43410852713178294, 0.43410852713178294, 0.4496124031007752, 0.46511627906976744, 0.4728682170542636, 0.4883720930232558, 0.5116279069767442], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/COMM_domain.gap.json b/pfam_gap_rates/COMM_domain.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..1e1acce47544c87e42c8109b3a89f446a344f976
--- /dev/null
+++ b/pfam_gap_rates/COMM_domain.gap.json
@@ -0,0 +1 @@
+{"family": "COMM_domain", "n_seqs": 610, "length": 83, "gap_rates": [0.6639344262295082, 0.30655737704918035, 0.16885245901639345, 0.10491803278688525, 0.08688524590163935, 0.07049180327868852, 0.06229508196721312, 0.060655737704918035, 0.05737704918032787, 0.05573770491803279, 0.05573770491803279, 0.05245901639344262, 0.08852459016393442, 0.08360655737704918, 0.08032786885245902, 0.05081967213114754, 0.03770491803278689, 0.03278688524590164, 0.03278688524590164, 0.06557377049180328, 0.07049180327868852, 0.040983606557377046, 0.03770491803278689, 0.014754098360655738, 0.003278688524590164, 0.001639344262295082, 0.0, 0.0, 0.0, 0.0, 0.0, 0.001639344262295082, 0.001639344262295082, 0.003278688524590164, 0.004918032786885246, 0.004918032786885246, 0.019672131147540985, 0.898360655737705, 0.9049180327868852, 0.9344262295081968, 0.9180327868852459, 0.9016393442622951, 0.8967213114754098, 0.021311475409836064, 0.10655737704918032, 0.3885245901639344, 0.27377049180327867, 0.3114754098360656, 0.26885245901639343, 0.7721311475409836, 0.8721311475409836, 0.9262295081967213, 0.9016393442622951, 0.8180327868852459, 0.6426229508196721, 0.03770491803278689, 0.03442622950819672, 0.03442622950819672, 0.03442622950819672, 0.03442622950819672, 0.03442622950819672, 0.036065573770491806, 0.036065573770491806, 0.03934426229508197, 0.03770491803278689, 0.03934426229508197, 0.04426229508196721, 0.04590163934426229, 0.05081967213114754, 0.054098360655737705, 0.05901639344262295, 0.060655737704918035, 0.06721311475409836, 0.07540983606557378, 0.08524590163934426, 0.10163934426229508, 0.11475409836065574, 0.13442622950819672, 0.1557377049180328, 0.1901639344262295, 0.2459016393442623, 0.34262295081967215, 0.6639344262295082], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/COPIIcoated_ERV.gap.json b/pfam_gap_rates/COPIIcoated_ERV.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..4e70ef9efdf5f96cbc06dbba54622790ec9a4749
--- /dev/null
+++ b/pfam_gap_rates/COPIIcoated_ERV.gap.json
@@ -0,0 +1 @@
+{"family": "COPIIcoated_ERV", "n_seqs": 924, "length": 290, "gap_rates": [0.6082251082251082, 0.6071428571428571, 0.6060606060606061, 0.604978354978355, 0.6017316017316018, 0.5995670995670995, 0.6136363636363636, 0.6071428571428571, 0.8852813852813853, 0.9123376623376623, 0.9155844155844156, 0.8961038961038961, 0.6645021645021645, 0.5865800865800865, 0.5844155844155844, 0.5844155844155844, 0.5844155844155844, 0.5844155844155844, 0.5844155844155844, 0.5833333333333334, 0.5833333333333334, 0.5833333333333334, 0.5833333333333334, 0.5811688311688312, 0.5811688311688312, 0.5800865800865801, 0.5800865800865801, 0.579004329004329, 0.579004329004329, 0.577922077922078, 0.5746753246753247, 0.5735930735930735, 0.5725108225108225, 0.5811688311688312, 0.6071428571428571, 0.5703463203463204, 0.5670995670995671, 0.564935064935065, 0.5606060606060606, 0.5584415584415584, 0.5584415584415584, 0.5595238095238095, 0.5562770562770563, 0.5681818181818182, 0.5497835497835498, 0.5551948051948052, 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\ No newline at end of file
diff --git a/pfam_gap_rates/COX3.gap.json b/pfam_gap_rates/COX3.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..83d1fb8509d79b174792f1a58a9963780f53bceb
--- /dev/null
+++ b/pfam_gap_rates/COX3.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/COX5B.gap.json b/pfam_gap_rates/COX5B.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..41ba92bc1309e450572612a91bc0f66c803210f0
--- /dev/null
+++ b/pfam_gap_rates/COX5B.gap.json
@@ -0,0 +1 @@
+{"family": "COX5B", "n_seqs": 353, "length": 131, "gap_rates": [0.9405099150141643, 0.8923512747875354, 0.8498583569405099, 0.8045325779036827, 0.7677053824362606, 0.7478753541076487, 0.7337110481586402, 0.7195467422096318, 0.7110481586402266, 0.6940509915014165, 0.6912181303116147, 0.6770538243626062, 0.6572237960339944, 0.6458923512747875, 0.6317280453257791, 0.5977337110481586, 0.5892351274787535, 0.5779036827195467, 0.56657223796034, 0.5580736543909348, 0.5382436260623229, 0.5155807365439093, 0.49008498583569404, 0.47592067988668557, 0.4447592067988669, 0.40793201133144474, 0.37960339943342775, 0.3626062322946176, 0.35694050991501414, 0.35127478753541075, 0.3342776203966006, 0.3087818696883853, 0.29745042492917845, 0.24929178470254956, 0.20396600566572237, 0.20396600566572237, 0.18413597733711048, 0.1813031161473088, 0.17847025495750707, 0.17847025495750707, 0.1671388101983003, 0.1558073654390935, 0.141643059490085, 0.14730878186968838, 0.14447592067988668, 0.1388101983002833, 0.1359773371104816, 0.13314447592067988, 0.13031161473087818, 0.1274787535410765, 0.943342776203966, 0.10198300283286119, 0.08498583569405099, 0.0764872521246459, 0.0764872521246459, 0.07365439093484419, 0.07365439093484419, 0.7648725212464589, 0.07932011331444759, 0.0708215297450425, 0.42776203966005666, 0.24362606232294617, 0.056657223796033995, 0.04815864022662889, 0.028328611898016998, 0.0226628895184136, 0.0226628895184136, 0.014164305949008499, 0.0113314447592068, 0.0113314447592068, 0.0113314447592068, 0.0113314447592068, 0.0113314447592068, 0.0113314447592068, 0.0113314447592068, 0.0113314447592068, 0.014164305949008499, 0.014164305949008499, 0.014164305949008499, 0.014164305949008499, 0.014164305949008499, 0.014164305949008499, 0.0169971671388102, 0.019830028328611898, 0.019830028328611898, 0.019830028328611898, 0.3314447592067989, 0.8668555240793201, 0.0708215297450425, 0.0339943342776204, 0.0453257790368272, 0.039660056657223795, 0.039660056657223795, 0.039660056657223795, 0.042492917847025496, 0.04815864022662889, 0.0453257790368272, 0.0453257790368272, 0.039660056657223795, 0.039660056657223795, 0.042492917847025496, 0.042492917847025496, 0.0453257790368272, 0.053824362606232294, 0.053824362606232294, 0.7648725212464589, 0.056657223796033995, 0.056657223796033995, 0.06232294617563739, 0.0679886685552408, 0.19830028328611898, 0.1501416430594901, 0.0764872521246459, 0.0764872521246459, 0.0764872521246459, 0.0906515580736544, 0.09631728045325778, 0.1048158640226629, 0.1274787535410765, 0.20679886685552407, 0.3314447592067989, 0.38243626062322944, 0.40509915014164305, 0.43626062322946174, 0.46458923512747874, 0.5410764872521246, 0.5779036827195467, 0.6090651558073654, 0.6515580736543909, 0.6912181303116147, 0.7705382436260623], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/CPP1-like.gap.json b/pfam_gap_rates/CPP1-like.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b7cc03325bcf2dcddb05f0acf5ac437eb3bf1513
--- /dev/null
+++ b/pfam_gap_rates/CPP1-like.gap.json
@@ -0,0 +1 @@
+{"family": "CPP1-like", "n_seqs": 224, "length": 224, "gap_rates": [0.4955357142857143, 0.23214285714285715, 0.20535714285714285, 0.19196428571428573, 0.16071428571428573, 0.15178571428571427, 0.15178571428571427, 0.14732142857142858, 0.13839285714285715, 0.13839285714285715, 0.11160714285714286, 0.07589285714285714, 0.07589285714285714, 0.08035714285714286, 0.07589285714285714, 0.07589285714285714, 0.07589285714285714, 0.07589285714285714, 0.08035714285714286, 0.07589285714285714, 0.07589285714285714, 0.07589285714285714, 0.08035714285714286, 0.07589285714285714, 0.07589285714285714, 0.07589285714285714, 0.07142857142857142, 0.06696428571428571, 0.06696428571428571, 0.06696428571428571, 0.06696428571428571, 0.06696428571428571, 0.06696428571428571, 0.06696428571428571, 0.0625, 0.0625, 0.05803571428571429, 0.049107142857142856, 0.049107142857142856, 0.049107142857142856, 0.049107142857142856, 0.049107142857142856, 0.049107142857142856, 0.049107142857142856, 0.049107142857142856, 0.049107142857142856, 0.049107142857142856, 0.8839285714285714, 0.8839285714285714, 0.8839285714285714, 0.8839285714285714, 0.049107142857142856, 0.26785714285714285, 0.09821428571428571, 0.0625, 0.0625, 0.049107142857142856, 0.049107142857142856, 0.0625, 0.07142857142857142, 0.36607142857142855, 0.36607142857142855, 0.33482142857142855, 0.16517857142857142, 0.08482142857142858, 0.09821428571428571, 0.3392857142857143, 0.22767857142857142, 0.14285714285714285, 0.19196428571428573, 0.17410714285714285, 0.9375, 0.6294642857142857, 0.6339285714285714, 0.6651785714285714, 0.7098214285714286, 0.7008928571428571, 0.6741071428571429, 0.6473214285714286, 0.6607142857142857, 0.5892857142857143, 0.41964285714285715, 0.42410714285714285, 0.5223214285714286, 0.21428571428571427, 0.8526785714285714, 0.8660714285714286, 0.8616071428571429, 0.8526785714285714, 0.4642857142857143, 0.4419642857142857, 0.4330357142857143, 0.19642857142857142, 0.08928571428571429, 0.08035714285714286, 0.08035714285714286, 0.08482142857142858, 0.08482142857142858, 0.08482142857142858, 0.08482142857142858, 0.08928571428571429, 0.08928571428571429, 0.08928571428571429, 0.07589285714285714, 0.06696428571428571, 0.06696428571428571, 0.0625, 0.0625, 0.0625, 0.0625, 0.0625, 0.0625, 0.0625, 0.0625, 0.06696428571428571, 0.06696428571428571, 0.06696428571428571, 0.06696428571428571, 0.07142857142857142, 0.06696428571428571, 0.06696428571428571, 0.07142857142857142, 0.08035714285714286, 0.08035714285714286, 0.08035714285714286, 0.08035714285714286, 0.8169642857142857, 0.8303571428571429, 0.8526785714285714, 0.8616071428571429, 0.8928571428571429, 0.8526785714285714, 0.8348214285714286, 0.8303571428571429, 0.7098214285714286, 0.6383928571428571, 0.1875, 0.15178571428571427, 0.09375, 0.08035714285714286, 0.08035714285714286, 0.9285714285714286, 0.08482142857142858, 0.09375, 0.08482142857142858, 0.08035714285714286, 0.09375, 0.09375, 0.10267857142857142, 0.11607142857142858, 0.125, 0.13839285714285715, 0.12946428571428573, 0.125, 0.13839285714285715, 0.15178571428571427, 0.15625, 0.16071428571428573, 0.16071428571428573, 0.9330357142857143, 0.9419642857142857, 0.9419642857142857, 0.9419642857142857, 0.9330357142857143, 0.9241071428571429, 0.16071428571428573, 0.16071428571428573, 0.16071428571428573, 0.16071428571428573, 0.16071428571428573, 0.16071428571428573, 0.16071428571428573, 0.16071428571428573, 0.17410714285714285, 0.1875, 0.1875, 0.1875, 0.1875, 0.1875, 0.1875, 0.19196428571428573, 0.19642857142857142, 0.19642857142857142, 0.20089285714285715, 0.19642857142857142, 0.19196428571428573, 0.19642857142857142, 0.19642857142857142, 0.19642857142857142, 0.19642857142857142, 0.20089285714285715, 0.20535714285714285, 0.2544642857142857, 0.26785714285714285, 0.6116071428571429, 0.7589285714285714, 0.2857142857142857, 0.26339285714285715, 0.24553571428571427, 0.24107142857142858, 0.28125, 0.26339285714285715, 0.24107142857142858, 0.23214285714285715, 0.21875, 0.21875, 0.2857142857142857, 0.21875, 0.21875, 0.21875, 0.21875, 0.21875, 0.21875, 0.21875, 0.22767857142857142, 0.23214285714285715, 0.23214285714285715, 0.24107142857142858, 0.24107142857142858, 0.25, 0.25, 0.25, 0.26339285714285715, 0.375], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/CPSF73-100_C.gap.json b/pfam_gap_rates/CPSF73-100_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d43a38ed66f152c0aa25d05c9ee11269216bc3f8
--- /dev/null
+++ b/pfam_gap_rates/CPSF73-100_C.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/CPSase_L_D2.gap.json b/pfam_gap_rates/CPSase_L_D2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..037183788bb768cecd8545f2f5702b18c596b03a
--- /dev/null
+++ b/pfam_gap_rates/CPSase_L_D2.gap.json
@@ -0,0 +1 @@
+{"family": "CPSase_L_D2", "n_seqs": 5000, "length": 214, "gap_rates": [0.3114, 0.1192, 0.1124, 0.1044, 0.1008, 0.0982, 0.0972, 0.0962, 0.094, 0.0924, 0.0912, 0.09, 0.0892, 0.0882, 0.0878, 0.0884, 0.0866, 0.0852, 0.084, 0.081, 0.0758, 0.07, 0.5898, 0.527, 0.0536, 0.0496, 0.0476, 0.0464, 0.0456, 0.0448, 0.0428, 0.0402, 0.0386, 0.0358, 0.0362, 0.0356, 0.034, 0.0324, 0.0326, 0.0318, 0.0314, 0.0306, 0.0298, 0.0296, 0.0292, 0.0292, 0.0288, 0.029, 0.0292, 0.03, 0.0296, 0.0294, 0.0296, 0.0292, 0.0288, 0.0288, 0.029, 0.029, 0.0286, 0.0282, 0.0278, 0.0278, 0.0274, 0.0278, 0.0278, 0.0282, 0.029, 0.0294, 0.0302, 0.031, 0.0316, 0.0324, 0.0326, 0.0332, 0.1422, 0.551, 0.545, 0.5428, 0.5076, 0.0996, 0.0336, 0.0314, 0.0294, 0.0294, 0.029, 0.029, 0.0294, 0.0294, 0.0294, 0.03, 0.0314, 0.074, 0.0546, 0.039, 0.0422, 0.042, 0.0416, 0.0416, 0.0412, 0.0416, 0.0414, 0.0574, 0.0504, 0.0616, 0.0772, 0.0728, 0.0508, 0.0524, 0.0874, 0.0696, 0.0476, 0.0482, 0.0494, 0.0458, 0.0468, 0.0452, 0.0448, 0.0452, 0.0448, 0.5598, 0.5436, 0.0448, 0.0448, 0.045, 0.0454, 0.0458, 0.0452, 0.0448, 0.0462, 0.0444, 0.0456, 0.046, 0.0484, 0.0478, 0.045, 0.0442, 0.0446, 0.0432, 0.0426, 0.042, 0.0416, 0.0404, 0.0396, 0.0392, 0.0388, 0.0392, 0.039, 0.0394, 0.0398, 0.0396, 0.0396, 0.0392, 0.0402, 0.0402, 0.04, 0.0396, 0.0396, 0.0398, 0.0402, 0.04, 0.9152, 0.0402, 0.04, 0.0398, 0.0396, 0.0396, 0.0398, 0.04, 0.2836, 0.9422, 0.5616, 0.0808, 0.0414, 0.0388, 0.0394, 0.039, 0.0396, 0.0392, 0.0388, 0.0386, 0.0394, 0.0398, 0.04, 0.0406, 0.0414, 0.0422, 0.0422, 0.0426, 0.0446, 0.0448, 0.0448, 0.045, 0.0466, 0.0468, 0.0478, 0.0476, 0.048, 0.0484, 0.0484, 0.0496, 0.05, 0.0506, 0.052, 0.0556, 0.0614, 0.0704, 0.0774, 0.082, 0.0874, 0.0998, 0.1224, 0.1446, 0.219, 0.6322], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/CRISPR_Cse2.gap.json b/pfam_gap_rates/CRISPR_Cse2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..401346b2d838c30eb1cfa0e463c22059f5753819
--- /dev/null
+++ b/pfam_gap_rates/CRISPR_Cse2.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/CRS1_YhbY.gap.json b/pfam_gap_rates/CRS1_YhbY.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e11cf92ecd118565b0f9134118fdb8a0e5489806
--- /dev/null
+++ b/pfam_gap_rates/CRS1_YhbY.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/CTD.gap.json b/pfam_gap_rates/CTD.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..982c60e0839209bc01397eddf05db0b58438d516
--- /dev/null
+++ b/pfam_gap_rates/CTD.gap.json
@@ -0,0 +1 @@
+{"family": "CTD", "n_seqs": 218, "length": 113, "gap_rates": [0.518348623853211, 0.24311926605504589, 0.16972477064220184, 0.1559633027522936, 0.13761467889908258, 0.12844036697247707, 0.12844036697247707, 0.12385321100917432, 0.16055045871559634, 0.8761467889908257, 0.8073394495412844, 0.555045871559633, 0.30275229357798167, 0.0871559633027523, 0.03211009174311927, 0.01834862385321101, 0.013761467889908258, 0.022935779816513763, 0.009174311926605505, 0.009174311926605505, 0.15137614678899083, 0.44036697247706424, 0.3256880733944954, 0.9495412844036697, 0.009174311926605505, 0.009174311926605505, 0.009174311926605505, 0.022935779816513763, 0.8073394495412844, 0.8073394495412844, 0.8165137614678899, 0.8302752293577982, 0.8165137614678899, 0.8073394495412844, 0.8073394495412844, 0.7568807339449541, 0.045871559633027525, 0.0045871559633027525, 0.0045871559633027525, 0.009174311926605505, 0.10091743119266056, 0.41743119266055045, 0.8348623853211009, 0.8899082568807339, 0.8990825688073395, 0.8761467889908257, 0.8073394495412844, 0.04128440366972477, 0.027522935779816515, 0.013761467889908258, 0.013761467889908258, 0.009174311926605505, 0.03669724770642202, 0.009174311926605505, 0.7752293577981652, 0.3577981651376147, 0.27522935779816515, 0.03669724770642202, 0.03211009174311927, 0.03211009174311927, 0.03211009174311927, 0.027522935779816515, 0.027522935779816515, 0.03211009174311927, 0.04128440366972477, 0.7293577981651376, 0.8899082568807339, 0.9174311926605505, 0.944954128440367, 0.8990825688073395, 0.8165137614678899, 0.7018348623853211, 0.5091743119266054, 0.38073394495412843, 0.10550458715596331, 0.05963302752293578, 0.07339449541284404, 0.0779816513761468, 0.10550458715596331, 0.11009174311926606, 0.12844036697247707, 0.8165137614678899, 0.908256880733945, 0.944954128440367, 0.9311926605504587, 0.8715596330275229, 0.7706422018348624, 0.25229357798165136, 0.27522935779816515, 0.3211009174311927, 0.44954128440366975, 0.6192660550458715, 0.8165137614678899, 0.8715596330275229, 0.8853211009174312, 0.926605504587156, 0.9403669724770642, 0.944954128440367, 0.9403669724770642, 0.926605504587156, 0.9174311926605505, 0.8761467889908257, 0.8669724770642202, 0.7247706422018348, 0.43577981651376146, 0.44036697247706424, 0.42660550458715596, 0.42201834862385323, 0.44495412844036697, 0.5275229357798165, 0.6284403669724771, 0.6788990825688074, 0.926605504587156], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/CTNNB1_binding.gap.json b/pfam_gap_rates/CTNNB1_binding.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..565242cd1569761d9fd017e323fac4a26ca82405
--- /dev/null
+++ b/pfam_gap_rates/CTNNB1_binding.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/CT_A_B.gap.json b/pfam_gap_rates/CT_A_B.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..3d01c33c26d51a8edea6894cfabf1adabb0b514c
--- /dev/null
+++ b/pfam_gap_rates/CT_A_B.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Caps_synth.gap.json b/pfam_gap_rates/Caps_synth.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..abd06a7c7e7bd0d5b3612c0709978dbee34f26a2
--- /dev/null
+++ b/pfam_gap_rates/Caps_synth.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Carb_anhydrase.gap.json b/pfam_gap_rates/Carb_anhydrase.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..4feb77d8730b80130e5e859835063cab7594e9c1
--- /dev/null
+++ b/pfam_gap_rates/Carb_anhydrase.gap.json
@@ -0,0 +1 @@
+{"family": "Carb_anhydrase", "n_seqs": 1923, "length": 283, "gap_rates": [0.7524700988039521, 0.5559022360894436, 0.515340613624545, 0.49349973998959956, 0.49349973998959956, 0.5683827353094124, 0.5283411336453459, 0.8949557982319293, 0.8632345293811753, 0.4721788871554862, 0.3416536661466459, 0.3343733749349974, 0.32709308372334894, 0.3083723348933957, 0.3042121684867395, 0.35985439417576703, 0.358814352574103, 0.3541341653666147, 0.33073322932917315, 0.3042121684867395, 0.7207488299531981, 0.7259490379615184, 0.7134685387415497, 0.2823712948517941, 0.2620904836193448, 0.2532501300052002, 0.6053042121684867, 0.24076963078523142, 0.22880915236609464, 0.22360894435777431, 0.218928757150286, 0.21632865314612584, 0.21528861154446177, 0.21580863234529382, 0.21580863234529382, 0.21580863234529382, 0.21580863234529382, 0.21528861154446177, 0.2360894435777431, 0.2438897555902236, 0.2542901716068643, 0.24752990119604784, 0.31357254290171604, 0.2438897555902236, 0.22776911076443057, 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\ No newline at end of file
diff --git a/pfam_gap_rates/Carbam_trans_C.gap.json b/pfam_gap_rates/Carbam_trans_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e7b0c988049ad682669989e5ace5bd2f36cb6c65
--- /dev/null
+++ b/pfam_gap_rates/Carbam_trans_C.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Carbam_trans_N.gap.json b/pfam_gap_rates/Carbam_trans_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..6819b91278604748c786d3d25210cbdd63c9f861
--- /dev/null
+++ b/pfam_gap_rates/Carbam_trans_N.gap.json
@@ -0,0 +1 @@
+{"family": "Carbam_trans_N", "n_seqs": 552, "length": 439, "gap_rates": [0.8351449275362319, 0.3822463768115942, 0.302536231884058, 0.2971014492753623, 0.29528985507246375, 0.29347826086956524, 0.7463768115942029, 0.730072463768116, 0.5253623188405797, 0.4420289855072464, 0.33695652173913043, 0.23550724637681159, 0.2246376811594203, 0.21920289855072464, 0.21557971014492755, 0.21739130434782608, 0.21557971014492755, 0.213768115942029, 0.213768115942029, 0.213768115942029, 0.21557971014492755, 0.213768115942029, 0.213768115942029, 0.213768115942029, 0.21195652173913043, 0.213768115942029, 0.21195652173913043, 0.21195652173913043, 0.21195652173913043, 0.21195652173913043, 0.21195652173913043, 0.21195652173913043, 0.21195652173913043, 0.21195652173913043, 0.21195652173913043, 0.21195652173913043, 0.21195652173913043, 0.21195652173913043, 0.21195652173913043, 0.21195652173913043, 0.213768115942029, 0.8514492753623188, 0.8641304347826086, 0.8659420289855072, 0.8786231884057971, 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\ No newline at end of file
diff --git a/pfam_gap_rates/CarbopepD_reg_2.gap.json b/pfam_gap_rates/CarbopepD_reg_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..1658220aa215b2e7ffacf6cfb1ad8e8acf6d74a8
--- /dev/null
+++ b/pfam_gap_rates/CarbopepD_reg_2.gap.json
@@ -0,0 +1 @@
+{"family": "CarbopepD_reg_2", "n_seqs": 5000, "length": 92, "gap_rates": [0.158, 0.057, 0.0348, 0.0286, 0.0184, 0.0136, 0.0132, 0.023, 0.0772, 0.319, 0.1668, 0.0406, 0.008, 0.0074, 0.0052, 0.0034, 0.0042, 0.0036, 0.0026, 0.0032, 0.0056, 0.0124, 0.0068, 0.007, 0.0058, 0.9346, 0.95, 0.9444, 0.9268, 0.0036, 0.0028, 0.002, 0.0006, 0.0, 0.0004, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0002, 0.0578, 0.4758, 0.0346, 0.0288, 0.0484, 0.0196, 0.0754, 0.1694, 0.0632, 0.0008, 0.001, 0.001, 0.0012, 0.0014, 0.0016, 0.0022, 0.0026, 0.0024, 0.0026, 0.0488, 0.2222, 0.276, 0.1258, 0.0306, 0.0176, 0.1052, 0.1826, 0.125, 0.0892, 0.1792, 0.1432, 0.1484, 0.167, 0.3984, 0.3764, 0.1296, 0.0784, 0.0408, 0.0464, 0.0562, 0.0594, 0.0682, 0.0848, 0.0692, 0.0642, 0.069, 0.0744, 0.084, 0.1198, 0.2006], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/CcdA.gap.json b/pfam_gap_rates/CcdA.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..cbb3b2f875efa77be2b9cad94239704a6a864fcc
--- /dev/null
+++ b/pfam_gap_rates/CcdA.gap.json
@@ -0,0 +1 @@
+{"family": "CcdA", "n_seqs": 157, "length": 73, "gap_rates": [0.29936305732484075, 0.24203821656050956, 0.1592356687898089, 0.10191082802547771, 0.08917197452229299, 0.07643312101910828, 0.06369426751592357, 0.05732484076433121, 0.05732484076433121, 0.05732484076433121, 0.05732484076433121, 0.05732484076433121, 0.05732484076433121, 0.050955414012738856, 0.050955414012738856, 0.050955414012738856, 0.050955414012738856, 0.050955414012738856, 0.050955414012738856, 0.050955414012738856, 0.050955414012738856, 0.03821656050955414, 0.03184713375796178, 0.03184713375796178, 0.025477707006369428, 0.025477707006369428, 0.025477707006369428, 0.01910828025477707, 0.01910828025477707, 0.01910828025477707, 0.01910828025477707, 0.012738853503184714, 0.01910828025477707, 0.012738853503184714, 0.012738853503184714, 0.012738853503184714, 0.9235668789808917, 0.910828025477707, 0.006369426751592357, 0.012738853503184714, 0.012738853503184714, 0.01910828025477707, 0.044585987261146494, 0.07643312101910828, 0.1592356687898089, 0.19745222929936307, 0.18471337579617833, 0.21656050955414013, 0.2229299363057325, 0.2229299363057325, 0.2229299363057325, 0.22929936305732485, 0.22929936305732485, 0.2356687898089172, 0.2484076433121019, 0.2611464968152866, 0.2802547770700637, 0.2802547770700637, 0.2929936305732484, 0.29936305732484075, 0.29936305732484075, 0.3057324840764331, 0.31210191082802546, 0.31210191082802546, 0.3184713375796178, 0.3184713375796178, 0.3184713375796178, 0.3184713375796178, 0.3248407643312102, 0.3885350318471338, 0.47770700636942676, 0.5031847133757962, 0.5159235668789809], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/CheC.gap.json b/pfam_gap_rates/CheC.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..42610a9e8b9f54b6a525a9d0e6745f43e38d1a97
--- /dev/null
+++ b/pfam_gap_rates/CheC.gap.json
@@ -0,0 +1 @@
+{"family": "CheC", "n_seqs": 1182, "length": 38, "gap_rates": [0.4906937394247039, 0.19035532994923857, 0.08121827411167512, 0.02284263959390863, 0.012690355329949238, 0.00338409475465313, 0.0008460236886632825, 0.0008460236886632825, 0.0008460236886632825, 0.0008460236886632825, 0.0008460236886632825, 0.0008460236886632825, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0008460236886632825, 0.0008460236886632825, 0.010998307952622674, 0.005076142131979695, 0.007614213197969543, 0.008460236886632826, 0.009306260575296108, 0.011844331641285956, 0.015228426395939087, 0.024534686971235193, 0.030456852791878174, 0.05922165820642978, 0.14974619289340102, 0.5152284263959391, 0.8781725888324873], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/ChpXY.gap.json b/pfam_gap_rates/ChpXY.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..4d6d1233d1941aa8ddad31d3acc9350cfc10952b
--- /dev/null
+++ b/pfam_gap_rates/ChpXY.gap.json
@@ -0,0 +1 @@
+{"family": "ChpXY", "n_seqs": 103, "length": 399, "gap_rates": [0.1941747572815534, 0.05825242718446602, 0.02912621359223301, 0.019417475728155338, 0.019417475728155338, 0.02912621359223301, 0.019417475728155338, 0.019417475728155338, 0.019417475728155338, 0.019417475728155338, 0.019417475728155338, 0.019417475728155338, 0.019417475728155338, 0.019417475728155338, 0.019417475728155338, 0.019417475728155338, 0.019417475728155338, 0.019417475728155338, 0.019417475728155338, 0.019417475728155338, 0.019417475728155338, 0.019417475728155338, 0.019417475728155338, 0.019417475728155338, 0.019417475728155338, 0.019417475728155338, 0.019417475728155338, 0.019417475728155338, 0.019417475728155338, 0.019417475728155338, 0.019417475728155338, 0.019417475728155338, 0.019417475728155338, 0.019417475728155338, 0.019417475728155338, 0.019417475728155338, 0.019417475728155338, 0.019417475728155338, 0.019417475728155338, 0.019417475728155338, 0.019417475728155338, 0.019417475728155338, 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\ No newline at end of file
diff --git a/pfam_gap_rates/Chromate_transp.gap.json b/pfam_gap_rates/Chromate_transp.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a3f8d9c52713281c1ba4846126bb95fa90b0e5e8
--- /dev/null
+++ b/pfam_gap_rates/Chromate_transp.gap.json
@@ -0,0 +1 @@
+{"family": "Chromate_transp", "n_seqs": 2955, "length": 203, "gap_rates": [0.7252115059221658, 0.3079526226734349, 0.15363790186125212, 0.1143824027072758, 0.0751269035532995, 0.05956006768189509, 0.046023688663282575, 0.03451776649746193, 0.03147208121827411, 0.02707275803722504, 0.02571912013536379, 0.024703891708967852, 0.024365482233502538, 0.023688663282571912, 0.023350253807106598, 0.023688663282571912, 0.024365482233502538, 0.05786802030456853, 0.047715736040609136, 0.047038917089678514, 0.023350253807106598, 0.021658206429780034, 0.016582064297800337, 0.01353637901861252, 0.011505922165820644, 0.015905245346869712, 0.013197969543147208, 0.014213197969543147, 0.012182741116751269, 0.0338409475465313, 0.017258883248730966, 0.18274111675126903, 0.03350253807106599, 0.026395939086294416, 0.011844331641285956, 0.009137055837563452, 0.009137055837563452, 0.009475465313028765, 0.009137055837563452, 0.008798646362098138, 0.009475465313028765, 0.009137055837563452, 0.009137055837563452, 0.009475465313028765, 0.009475465313028765, 0.009475465313028765, 0.009475465313028765, 0.01015228426395939, 0.010490693739424704, 0.009475465313028765, 0.009475465313028765, 0.010490693739424704, 0.009475465313028765, 0.009475465313028765, 0.009475465313028765, 0.10456852791878173, 0.20304568527918782, 0.010490693739424704, 0.008798646362098138, 0.008121827411167513, 0.008121827411167513, 0.008121827411167513, 0.007445008460236886, 0.007445008460236886, 0.0077834179357022, 0.5631133671742808, 0.7949238578680203, 0.822673434856176, 0.8703891708967851, 0.8971235194585448, 0.9380710659898477, 0.9475465313028765, 0.9428087986463621, 0.9191201353637902, 0.8835871404399324, 0.8467005076142132, 0.8016920473773266, 0.7895093062605752, 0.5204737732656515, 0.008460236886632826, 0.48494077834179355, 0.37021996615905245, 0.011844331641285956, 0.010829103214890017, 0.010829103214890017, 0.008460236886632826, 0.008460236886632826, 0.007445008460236886, 0.007445008460236886, 0.0077834179357022, 0.00676818950930626, 0.00676818950930626, 0.00676818950930626, 0.007106598984771574, 0.00676818950930626, 0.006091370558375634, 0.006429780033840948, 0.006429780033840948, 0.00676818950930626, 0.007445008460236886, 0.00676818950930626, 0.007106598984771574, 0.007106598984771574, 0.007445008460236886, 0.0077834179357022, 0.007445008460236886, 0.008121827411167513, 0.0077834179357022, 0.008121827411167513, 0.007445008460236886, 0.0077834179357022, 0.01116751269035533, 0.09712351945854483, 0.029780033840947545, 0.9350253807106599, 0.028426395939086295, 0.018612521150592216, 0.016243654822335026, 0.012182741116751269, 0.010829103214890017, 0.009813874788494078, 0.009137055837563452, 0.009137055837563452, 0.009137055837563452, 0.009813874788494078, 0.009813874788494078, 0.01015228426395939, 0.01015228426395939, 0.01015228426395939, 0.01015228426395939, 0.010490693739424704, 0.010490693739424704, 0.010829103214890017, 0.01116751269035533, 0.011505922165820644, 0.011505922165820644, 0.011844331641285956, 0.011844331641285956, 0.012182741116751269, 0.9120135363790186, 0.013197969543147208, 0.019289340101522844, 0.01895093062605753, 0.02233502538071066, 0.015228426395939087, 0.016582064297800337, 0.016582064297800337, 0.02030456852791878, 0.09069373942470389, 0.5698815566835871, 0.7099830795262267, 0.749238578680203, 0.7813874788494077, 0.8328257191201354, 0.8622673434856176, 0.9153976311336718, 0.9384094754653131, 0.9421319796954315, 0.921150592216582, 0.9055837563451776, 0.8477157360406091, 0.8104906937394247, 0.766497461928934, 0.7340101522842639, 0.63248730964467, 0.4697123519458545, 0.03350253807106599, 0.017597292724196276, 0.016582064297800337, 0.016582064297800337, 0.016243654822335026, 0.05346869712351946, 0.050761421319796954, 0.02571912013536379, 0.031810490693739424, 0.021996615905245348, 0.02233502538071066, 0.024027072758037227, 0.024365482233502538, 0.027411167512690356, 0.03485617597292724, 0.04060913705583756, 0.02707275803722504, 0.904906937394247, 0.8636209813874789, 0.033164128595600674, 0.03147208121827411, 0.03011844331641286, 0.9292724196277495, 0.8693739424703891, 0.02774957698815567, 0.03756345177664975, 0.03620981387478849, 0.029441624365482234, 0.03147208121827411, 0.038917089678511, 0.04060913705583756, 0.046700507614213196, 0.0622673434856176, 0.09610829103214891, 0.16277495769881556, 0.2856175972927242, 0.8189509306260575], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Chromo.gap.json b/pfam_gap_rates/Chromo.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..36d2313f43b34f77221224ba4794918814bd7239
--- /dev/null
+++ b/pfam_gap_rates/Chromo.gap.json
@@ -0,0 +1 @@
+{"family": "Chromo", "n_seqs": 4222, "length": 64, "gap_rates": [0.5511605873993368, 0.2996210326859308, 0.13737565135007104, 0.11203221222169588, 0.10018948365703458, 0.08645191852202748, 0.08408337280909521, 0.08242539081004263, 0.0793462813832307, 0.07626717195641876, 0.0729512079583136, 0.07010895310279489, 0.06300331596399811, 0.058266224538133585, 0.056371387967787775, 0.058266224538133585, 0.6565608716248224, 0.839649455234486, 0.8981525343439128, 0.9199431549028896, 0.9386546660350544, 0.9149692089057319, 0.8702036949313122, 0.7027475130270014, 0.6155850307910943, 0.4436286120322122, 0.006868782567503553, 0.0016579819990525818, 0.0009474182851729038, 0.0009474182851729038, 0.00023685457129322596, 0.00023685457129322596, 0.0011842728564661299, 0.0018948365703458077, 0.0047370914258645196, 0.015158692562766462, 0.01397441970630033, 0.00876361913784936, 0.006395073424917101, 0.006158218853623875, 0.004973945997157745, 0.006158218853623875, 0.006631927996210327, 0.011842728564661297, 0.021553765987683562, 0.02700142112742776, 0.0310279488394126, 0.037186167693036475, 0.045476077688299386, 0.15774514448128849, 0.12008526764566556, 0.9403126480341071, 0.9178114637612506, 0.5634770251065846, 0.27711984841307435, 0.2209853150165798, 0.3308858360966367, 0.1785883467550924, 0.24230222643297017, 0.25082899099952627, 0.258882046423496, 0.3240170535291331, 0.4703931785883467, 0.8076740881099005], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/CitMHS_2.gap.json b/pfam_gap_rates/CitMHS_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..617c23bdc5474767dbe1466a186ba0f8714970e1
--- /dev/null
+++ b/pfam_gap_rates/CitMHS_2.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/ClpS.gap.json b/pfam_gap_rates/ClpS.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..51513d9cddf9658e27926ef79d0b1442b8a3d005
--- /dev/null
+++ b/pfam_gap_rates/ClpS.gap.json
@@ -0,0 +1 @@
+{"family": "ClpS", "n_seqs": 1391, "length": 81, "gap_rates": [0.7476635514018691, 0.45363048166786485, 0.29834651329978434, 0.16247304097771387, 0.07620416966211359, 0.06110711718188354, 0.039539899352983465, 0.020848310567936738, 0.018691588785046728, 0.012940330697340043, 0.012940330697340043, 0.012940330697340043, 0.012940330697340043, 0.012940330697340043, 0.012940330697340043, 0.012221423436376708, 0.011502516175413372, 0.005751258087706686, 0.005751258087706686, 0.005751258087706686, 0.005751258087706686, 0.005751258087706686, 0.006470165348670022, 0.007189072609633357, 0.006470165348670022, 0.0050323508267433505, 0.004313443565780014, 0.005751258087706686, 0.006470165348670022, 0.0035945363048166786, 0.002875629043853343, 0.8763479511143063, 0.0035945363048166786, 0.004313443565780014, 0.0050323508267433505, 0.004313443565780014, 0.004313443565780014, 0.0050323508267433505, 0.005751258087706686, 0.005751258087706686, 0.0050323508267433505, 0.0050323508267433505, 0.0050323508267433505, 0.0050323508267433505, 0.0050323508267433505, 0.0050323508267433505, 0.0050323508267433505, 0.005751258087706686, 0.007189072609633357, 0.007907979870596693, 0.008626887131560028, 0.008626887131560028, 0.010064701653486701, 0.017972681524083392, 0.029475197699496764, 0.05391804457225018, 0.07476635514018691, 0.07979870596693027, 0.08267433501078361, 0.08554996405463695, 0.08770668583752696, 0.08986340762041696, 0.09417685118619698, 0.09633357296908698, 0.09777138749101366, 0.100647016534867, 0.10639827462257369, 0.11718188353702372, 0.1308411214953271, 0.47088425593098493, 0.46872753414809487, 0.4716031631919482, 0.47304097771387493, 0.47735442127965494, 0.4787922358015816, 0.2753414809489576, 0.30913012221423436, 0.3177570093457944, 0.3299784327821711, 0.37167505391804456, 0.7124370956146657], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Clr2_transil.gap.json b/pfam_gap_rates/Clr2_transil.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..242db90345da5276b49ad53f59f0509445fe5f6e
--- /dev/null
+++ b/pfam_gap_rates/Clr2_transil.gap.json
@@ -0,0 +1 @@
+{"family": "Clr2_transil", "n_seqs": 142, "length": 91, "gap_rates": [0.38028169014084506, 0.28169014084507044, 0.176056338028169, 0.15492957746478872, 0.08450704225352113, 0.056338028169014086, 0.04225352112676056, 0.04225352112676056, 0.035211267605633804, 0.035211267605633804, 0.04225352112676056, 0.04225352112676056, 0.04225352112676056, 0.035211267605633804, 0.035211267605633804, 0.035211267605633804, 0.04929577464788732, 0.04929577464788732, 0.1056338028169014, 0.15492957746478872, 0.15492957746478872, 0.45774647887323944, 0.2535211267605634, 0.7253521126760564, 0.7816901408450704, 0.8169014084507042, 0.8309859154929577, 0.8380281690140845, 0.8450704225352113, 0.8802816901408451, 0.9295774647887324, 0.9295774647887324, 0.8661971830985915, 0.8450704225352113, 0.8380281690140845, 0.8309859154929577, 0.8098591549295775, 0.7605633802816901, 0.6830985915492958, 0.36619718309859156, 0.24647887323943662, 0.1056338028169014, 0.07042253521126761, 0.02112676056338028, 0.014084507042253521, 0.007042253521126761, 0.007042253521126761, 0.0, 0.0, 0.04225352112676056, 0.09859154929577464, 0.1056338028169014, 0.7253521126760564, 0.9436619718309859, 0.9366197183098591, 0.6619718309859155, 0.06338028169014084, 0.0, 0.0, 0.0, 0.007042253521126761, 0.007042253521126761, 0.007042253521126761, 0.007042253521126761, 0.007042253521126761, 0.007042253521126761, 0.007042253521126761, 0.007042253521126761, 0.007042253521126761, 0.007042253521126761, 0.007042253521126761, 0.007042253521126761, 0.007042253521126761, 0.014084507042253521, 0.014084507042253521, 0.04929577464788732, 0.056338028169014086, 0.04929577464788732, 0.07746478873239436, 0.852112676056338, 0.8802816901408451, 0.823943661971831, 0.43661971830985913, 0.24647887323943662, 0.2112676056338028, 0.035211267605633804, 0.035211267605633804, 0.035211267605633804, 0.035211267605633804, 0.04225352112676056, 0.06338028169014084], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Cnd1.gap.json b/pfam_gap_rates/Cnd1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..9cd01cfad83c66ad931c4a8216d24bc3e79907da
--- /dev/null
+++ b/pfam_gap_rates/Cnd1.gap.json
@@ -0,0 +1 @@
+{"family": "Cnd1", "n_seqs": 619, "length": 200, "gap_rates": [0.592891760904685, 0.2358642972536349, 0.18093699515347333, 0.172859450726979, 0.1631663974151858, 0.1567043618739903, 0.15508885298869143, 0.15508885298869143, 0.15347334410339256, 0.15024232633279483, 0.14862681744749595, 0.3166397415185784, 0.31017770597738287, 0.13893376413570274, 0.13247172859450726, 0.11793214862681745, 0.11147011308562198, 0.10016155088852989, 0.09046849757673667, 0.07108239095315025, 0.07108239095315025, 0.06785137318255251, 0.06623586429725363, 0.0630048465266559, 0.05492730210016155, 0.048465266558966075, 0.045234248788368334, 0.04038772213247173, 0.03877221324717286, 0.035541195476575124, 0.033925686591276254, 0.03231017770597738, 0.029079159935379646, 0.029079159935379646, 0.030694668820678513, 0.030694668820678513, 0.029079159935379646, 0.027463651050080775, 0.027463651050080775, 0.027463651050080775, 0.027463651050080775, 0.027463651050080775, 0.027463651050080775, 0.027463651050080775, 0.027463651050080775, 0.025848142164781908, 0.025848142164781908, 0.029079159935379646, 0.029079159935379646, 0.027463651050080775, 0.7996768982229402, 0.789983844911147, 0.027463651050080775, 0.025848142164781908, 0.029079159935379646, 0.027463651050080775, 0.029079159935379646, 0.027463651050080775, 0.030694668820678513, 0.029079159935379646, 0.025848142164781908, 0.022617124394184167, 0.7463651050080775, 0.027463651050080775, 0.027463651050080775, 0.029079159935379646, 0.029079159935379646, 0.029079159935379646, 0.029079159935379646, 0.029079159935379646, 0.029079159935379646, 0.027463651050080775, 0.027463651050080775, 0.029079159935379646, 0.029079159935379646, 0.030694668820678513, 0.027463651050080775, 0.027463651050080775, 0.025848142164781908, 0.025848142164781908, 0.029079159935379646, 0.029079159935379646, 0.025848142164781908, 0.025848142164781908, 0.025848142164781908, 0.029079159935379646, 0.030694668820678513, 0.029079159935379646, 0.03231017770597738, 0.03231017770597738, 0.035541195476575124, 0.03877221324717286, 0.04038772213247173, 0.7512116316639742, 0.04361873990306947, 0.42164781906300486, 0.07592891760904685, 0.05331179321486268, 0.05331179321486268, 0.051696284329563816, 0.05977382875605816, 0.05815831987075929, 0.05815831987075929, 0.05654281098546042, 0.05815831987075929, 0.05977382875605816, 0.061389337641357025, 0.0630048465266559, 0.06623586429725363, 0.06785137318255251, 0.07269789983844911, 0.3150242326332795, 0.8336025848142165, 0.8562197092084006, 0.8788368336025848, 0.8966074313408724, 0.9046849757673667, 0.9192245557350566, 0.9450726978998385, 0.9353796445880452, 0.9111470113085622, 0.9030694668820679, 0.8852988691437803, 0.8626817447495961, 0.8481421647819063, 0.8239095315024233, 0.1825525040387722, 0.3053311793214863, 0.2730210016155089, 0.1147011308562197, 0.8529886914378029, 0.8610662358642972, 0.8675282714054927, 0.877221324717286, 0.8869143780290791, 0.901453957996769, 0.9176090468497576, 0.9224555735056543, 0.938610662358643, 0.9305331179321487, 0.9208400646203554, 0.9079159935379645, 0.8901453957996769, 0.8804523424878837, 0.8723747980613893, 0.8626817447495961, 0.8610662358642972, 0.8497576736672051, 0.1147011308562197, 0.11631663974151858, 0.1147011308562197, 0.1147011308562197, 0.11308562197092084, 0.11954765751211632, 0.1260096930533118, 0.12277867528271405, 0.12439418416801293, 0.12762520193861066, 0.12762520193861066, 0.12762520193861066, 0.12762520193861066, 0.1308562197092084, 0.13408723747980614, 0.13247172859450726, 0.13893376413570274, 0.14054927302100162, 0.1470113085621971, 0.1567043618739903, 0.1631663974151858, 0.1631663974151858, 0.81421647819063, 0.34248788368336025, 0.18739903069466882, 0.18739903069466882, 0.18739903069466882, 0.1938610662358643, 0.19547657512116318, 0.20032310177705978, 0.20032310177705978, 0.20032310177705978, 0.2035541195476575, 0.210016155088853, 0.21163166397415187, 0.2407108239095315, 0.2617124394184168, 0.2730210016155089, 0.28917609046849757, 0.30210016155088854, 0.3182552504038772, 0.3295638126009693, 0.3505654281098546, 0.36995153473344106, 0.39095315024232635, 0.40226171243941844, 0.40387722132471726, 0.4087237479806139, 0.41033925686591277, 0.4168012924071082, 0.42487883683360256, 0.6348949919224556], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/CoA_binding_2.gap.json b/pfam_gap_rates/CoA_binding_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f2103299d69af75f47f2b379198cb55fb4288c8a
--- /dev/null
+++ b/pfam_gap_rates/CoA_binding_2.gap.json
@@ -0,0 +1 @@
+{"family": "CoA_binding_2", "n_seqs": 2370, "length": 136, "gap_rates": [0.43291139240506327, 0.10759493670886076, 0.03713080168776371, 0.032067510548523206, 0.03080168776371308, 0.028270042194092827, 0.028270042194092827, 0.049367088607594936, 0.046413502109704644, 0.0459915611814346, 0.04514767932489452, 0.0459915611814346, 0.026582278481012658, 0.032067510548523206, 0.02869198312236287, 0.027426160337552744, 0.026582278481012658, 0.024050632911392405, 0.021940928270042195, 0.02109704641350211, 0.019831223628691982, 0.0189873417721519, 0.01729957805907173, 0.016455696202531647, 0.016033755274261603, 0.5367088607594936, 0.6168776371308017, 0.4919831223628692, 0.012658227848101266, 0.016877637130801686, 0.42953586497890295, 0.009704641350210971, 0.009704641350210971, 0.009704641350210971, 0.009704641350210971, 0.009704641350210971, 0.009704641350210971, 0.009704641350210971, 0.009282700421940928, 0.015611814345991562, 0.8725738396624473, 0.8569620253164557, 0.013924050632911392, 0.014767932489451477, 0.0189873417721519, 0.016877637130801686, 0.016877637130801686, 0.0189873417721519, 0.013080168776371307, 0.010548523206751054, 0.010126582278481013, 0.008438818565400843, 0.006751054852320675, 0.00590717299578059, 0.00590717299578059, 0.03670886075949367, 0.8464135021097047, 0.03080168776371308, 0.9354430379746835, 0.07552742616033756, 0.010970464135021098, 0.00590717299578059, 0.005485232067510549, 0.002953586497890295, 0.002109704641350211, 0.002109704641350211, 0.0016877637130801688, 0.0016877637130801688, 0.002109704641350211, 0.002109704641350211, 0.006329113924050633, 0.006751054852320675, 0.0037974683544303796, 0.002531645569620253, 0.002531645569620253, 0.002531645569620253, 0.0033755274261603376, 0.002953586497890295, 0.002953586497890295, 0.002953586497890295, 0.002953586497890295, 0.0033755274261603376, 0.0033755274261603376, 0.004219409282700422, 0.004641350210970464, 0.9455696202531646, 0.009282700421940928, 0.9426160337552743, 0.004641350210970464, 0.004641350210970464, 0.004641350210970464, 0.004641350210970464, 0.00590717299578059, 0.00590717299578059, 0.00590717299578059, 0.006751054852320675, 0.006751054852320675, 0.46160337552742614, 0.4751054852320675, 0.5059071729957806, 0.5312236286919831, 0.6046413502109704, 0.9421940928270042, 0.5822784810126582, 0.5181434599156118, 0.5016877637130802, 0.47215189873417723, 0.45949367088607596, 0.007172995780590718, 0.014345991561181435, 0.014767932489451477, 0.015611814345991562, 0.015611814345991562, 0.015189873417721518, 0.016455696202531647, 0.016455696202531647, 0.016877637130801686, 0.016877637130801686, 0.019409282700421943, 0.01729957805907173, 0.9438818565400844, 0.019409282700421943, 0.0270042194092827, 0.03375527426160337, 0.0379746835443038, 0.035864978902953586, 0.036286919831223625, 0.10632911392405063, 0.04472573839662447, 0.04683544303797468, 0.05822784810126582, 0.06455696202531645, 0.0729957805907173, 0.10464135021097046, 0.21814345991561182, 0.5810126582278481], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Coatomer_b_Cpla.gap.json b/pfam_gap_rates/Coatomer_b_Cpla.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d921bcfa53bcd97eea99e7077189de9fe946ae30
--- /dev/null
+++ b/pfam_gap_rates/Coatomer_b_Cpla.gap.json
@@ -0,0 +1 @@
+{"family": "Coatomer_b_Cpla", "n_seqs": 372, "length": 132, "gap_rates": [0.3172043010752688, 0.1989247311827957, 0.10215053763440861, 0.06451612903225806, 0.056451612903225805, 0.04838709677419355, 0.0456989247311828, 0.0456989247311828, 0.0456989247311828, 0.0456989247311828, 0.0456989247311828, 0.0456989247311828, 0.0456989247311828, 0.0456989247311828, 0.043010752688172046, 0.043010752688172046, 0.043010752688172046, 0.04032258064516129, 0.04032258064516129, 0.04032258064516129, 0.04032258064516129, 0.04032258064516129, 0.04032258064516129, 0.043010752688172046, 0.043010752688172046, 0.043010752688172046, 0.04032258064516129, 0.04032258064516129, 0.04032258064516129, 0.043010752688172046, 0.04032258064516129, 0.04032258064516129, 0.04032258064516129, 0.04032258064516129, 0.04032258064516129, 0.04032258064516129, 0.04032258064516129, 0.04032258064516129, 0.03763440860215054, 0.03225806451612903, 0.02956989247311828, 0.04032258064516129, 0.04838709677419355, 0.0456989247311828, 0.0456989247311828, 0.051075268817204304, 0.056451612903225805, 0.056451612903225805, 0.06720430107526881, 0.06182795698924731, 0.05913978494623656, 0.05913978494623656, 0.05913978494623656, 0.06182795698924731, 0.06182795698924731, 0.06182795698924731, 0.06182795698924731, 0.05913978494623656, 0.05913978494623656, 0.05913978494623656, 0.05913978494623656, 0.05913978494623656, 0.05913978494623656, 0.056451612903225805, 0.056451612903225805, 0.056451612903225805, 0.056451612903225805, 0.0967741935483871, 0.10215053763440861, 0.09408602150537634, 0.0967741935483871, 0.07258064516129033, 0.06989247311827956, 0.06720430107526881, 0.06451612903225806, 0.06720430107526881, 0.06720430107526881, 0.06720430107526881, 0.06451612903225806, 0.06451612903225806, 0.06451612903225806, 0.06451612903225806, 0.06451612903225806, 0.06182795698924731, 0.06182795698924731, 0.06182795698924731, 0.06182795698924731, 0.06451612903225806, 0.06182795698924731, 0.06182795698924731, 0.06182795698924731, 0.06182795698924731, 0.06451612903225806, 0.06451612903225806, 0.06451612903225806, 0.06720430107526881, 0.06720430107526881, 0.06720430107526881, 0.06720430107526881, 0.06720430107526881, 0.06989247311827956, 0.06989247311827956, 0.06989247311827956, 0.1478494623655914, 0.7661290322580645, 0.8682795698924731, 0.7849462365591398, 0.5268817204301075, 0.0913978494623656, 0.07795698924731183, 0.07795698924731183, 0.07795698924731183, 0.07795698924731183, 0.07526881720430108, 0.07795698924731183, 0.07795698924731183, 0.08064516129032258, 0.08064516129032258, 0.08064516129032258, 0.08602150537634409, 0.08333333333333333, 0.08602150537634409, 0.10215053763440861, 0.11021505376344086, 0.11559139784946236, 0.11559139784946236, 0.11559139784946236, 0.12096774193548387, 0.12903225806451613, 0.1478494623655914, 0.3279569892473118, 0.3548387096774194], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/CobT_C.gap.json b/pfam_gap_rates/CobT_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..eae58fed46f3640fb41c6800319fd82d3d923c5e
--- /dev/null
+++ b/pfam_gap_rates/CobT_C.gap.json
@@ -0,0 +1 @@
+{"family": "CobT_C", "n_seqs": 282, "length": 219, "gap_rates": [0.4858156028368794, 0.20921985815602837, 0.19858156028368795, 0.1950354609929078, 0.19148936170212766, 0.1879432624113475, 0.18085106382978725, 0.17375886524822695, 0.1595744680851064, 0.14893617021276595, 0.14184397163120568, 0.1347517730496454, 0.13120567375886524, 0.12411347517730496, 0.12056737588652482, 0.12056737588652482, 0.12056737588652482, 0.12056737588652482, 0.12056737588652482, 0.12056737588652482, 0.12056737588652482, 0.12056737588652482, 0.12056737588652482, 0.12056737588652482, 0.12056737588652482, 0.12056737588652482, 0.12411347517730496, 0.13829787234042554, 0.15602836879432624, 0.12411347517730496, 0.12056737588652482, 0.1276595744680851, 0.12411347517730496, 0.1347517730496454, 0.1879432624113475, 0.1595744680851064, 0.12411347517730496, 0.12411347517730496, 0.12411347517730496, 0.12056737588652482, 0.12056737588652482, 0.12056737588652482, 0.12056737588652482, 0.12056737588652482, 0.12056737588652482, 0.12056737588652482, 0.12056737588652482, 0.1276595744680851, 0.1276595744680851, 0.1276595744680851, 0.1276595744680851, 0.1276595744680851, 0.1276595744680851, 0.13120567375886524, 0.13120567375886524, 0.13120567375886524, 0.13120567375886524, 0.13120567375886524, 0.1453900709219858, 0.23404255319148937, 0.20921985815602837, 0.2127659574468085, 0.23404255319148937, 0.22695035460992907, 0.23049645390070922, 0.23049645390070922, 0.22695035460992907, 0.23404255319148937, 0.2375886524822695, 0.23049645390070922, 0.22695035460992907, 0.22695035460992907, 0.21631205673758866, 0.2198581560283688, 0.21631205673758866, 0.20212765957446807, 0.20212765957446807, 0.20567375886524822, 0.20212765957446807, 0.20567375886524822, 0.19858156028368795, 0.19858156028368795, 0.19858156028368795, 0.19858156028368795, 0.19858156028368795, 0.19858156028368795, 0.19858156028368795, 0.20567375886524822, 0.2127659574468085, 0.20212765957446807, 0.20212765957446807, 0.19858156028368795, 0.20567375886524822, 0.20567375886524822, 0.20921985815602837, 0.21631205673758866, 0.21631205673758866, 0.2127659574468085, 0.20921985815602837, 0.20921985815602837, 0.20921985815602837, 0.2624113475177305, 0.25886524822695034, 0.24113475177304963, 0.2198581560283688, 0.2198581560283688, 0.1950354609929078, 0.18085106382978725, 0.18085106382978725, 0.17375886524822695, 0.1702127659574468, 0.16312056737588654, 0.1524822695035461, 0.12411347517730496, 0.10638297872340426, 0.09929078014184398, 0.09929078014184398, 0.09929078014184398, 0.09929078014184398, 0.09929078014184398, 0.09929078014184398, 0.09929078014184398, 0.09929078014184398, 0.09929078014184398, 0.09929078014184398, 0.09929078014184398, 0.09929078014184398, 0.09929078014184398, 0.09929078014184398, 0.09929078014184398, 0.09574468085106383, 0.09574468085106383, 0.09574468085106383, 0.09574468085106383, 0.09574468085106383, 0.09574468085106383, 0.09574468085106383, 0.09574468085106383, 0.09574468085106383, 0.09574468085106383, 0.09574468085106383, 0.09574468085106383, 0.09574468085106383, 0.09574468085106383, 0.09574468085106383, 0.09574468085106383, 0.09574468085106383, 0.09574468085106383, 0.20567375886524822, 0.19858156028368795, 0.1950354609929078, 0.1879432624113475, 0.19148936170212766, 0.1950354609929078, 0.19148936170212766, 0.16312056737588654, 0.15602836879432624, 0.1595744680851064, 0.15602836879432624, 0.1595744680851064, 0.16312056737588654, 0.16312056737588654, 0.16666666666666666, 0.1595744680851064, 0.15602836879432624, 0.15602836879432624, 0.15602836879432624, 0.15602836879432624, 0.15602836879432624, 0.15602836879432624, 0.1595744680851064, 0.1773049645390071, 0.18439716312056736, 0.20212765957446807, 0.18085106382978725, 0.1950354609929078, 0.18085106382978725, 0.17375886524822695, 0.1773049645390071, 0.1702127659574468, 0.17375886524822695, 0.17375886524822695, 0.17375886524822695, 0.17375886524822695, 0.17375886524822695, 0.17375886524822695, 0.1773049645390071, 0.18085106382978725, 0.18085106382978725, 0.19148936170212766, 0.19858156028368795, 0.9468085106382979, 0.20212765957446807, 0.20212765957446807, 0.20567375886524822, 0.20921985815602837, 0.2127659574468085, 0.2198581560283688, 0.21631205673758866, 0.2198581560283688, 0.23404255319148937, 0.23404255319148937, 0.23404255319148937, 0.2375886524822695, 0.23404255319148937, 0.23404255319148937, 0.24468085106382978, 0.24822695035460993, 0.2553191489361702, 0.26595744680851063, 0.2730496453900709, 0.2765957446808511, 0.28368794326241137, 0.2872340425531915, 0.2907801418439716, 0.30141843971631205, 0.31560283687943264, 0.3262411347517731, 0.6418439716312057], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/ComK.gap.json b/pfam_gap_rates/ComK.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..49101f4613c2f7a620cbd208d5752b79aa32c677
--- /dev/null
+++ b/pfam_gap_rates/ComK.gap.json
@@ -0,0 +1 @@
+{"family": "ComK", "n_seqs": 163, "length": 153, "gap_rates": [0.5828220858895705, 0.3803680981595092, 0.2822085889570552, 0.25153374233128833, 0.2147239263803681, 0.19631901840490798, 0.17791411042944785, 0.1656441717791411, 0.147239263803681, 0.12883435582822086, 0.12269938650306748, 0.1165644171779141, 0.1165644171779141, 0.12269938650306748, 0.12269938650306748, 0.656441717791411, 0.4110429447852761, 0.2331288343558282, 0.1901840490797546, 0.147239263803681, 0.1165644171779141, 0.15950920245398773, 0.12269938650306748, 0.07975460122699386, 0.06748466257668712, 0.06748466257668712, 0.06134969325153374, 0.05521472392638037, 0.05521472392638037, 0.04294478527607362, 0.05521472392638037, 0.05521472392638037, 0.7914110429447853, 0.049079754601226995, 0.04294478527607362, 0.03680981595092025, 0.03680981595092025, 0.03680981595092025, 0.03680981595092025, 0.03680981595092025, 0.03680981595092025, 0.03680981595092025, 0.03680981595092025, 0.03680981595092025, 0.03680981595092025, 0.03680981595092025, 0.03680981595092025, 0.03680981595092025, 0.03680981595092025, 0.03067484662576687, 0.03067484662576687, 0.03067484662576687, 0.03680981595092025, 0.03680981595092025, 0.03680981595092025, 0.03680981595092025, 0.03680981595092025, 0.04294478527607362, 0.03680981595092025, 0.06134969325153374, 0.049079754601226995, 0.04294478527607362, 0.04294478527607362, 0.04294478527607362, 0.049079754601226995, 0.04294478527607362, 0.03680981595092025, 0.03680981595092025, 0.03680981595092025, 0.04294478527607362, 0.03680981595092025, 0.03680981595092025, 0.03680981595092025, 0.04294478527607362, 0.04294478527607362, 0.05521472392638037, 0.05521472392638037, 0.10429447852760736, 0.12269938650306748, 0.07975460122699386, 0.05521472392638037, 0.04294478527607362, 0.03067484662576687, 0.03067484662576687, 0.03067484662576687, 0.03067484662576687, 0.03067484662576687, 0.03680981595092025, 0.03680981595092025, 0.03680981595092025, 0.04294478527607362, 0.04294478527607362, 0.03680981595092025, 0.03680981595092025, 0.03680981595092025, 0.03067484662576687, 0.03067484662576687, 0.03067484662576687, 0.03067484662576687, 0.03067484662576687, 0.03067484662576687, 0.03067484662576687, 0.03067484662576687, 0.03680981595092025, 0.03067484662576687, 0.03680981595092025, 0.03680981595092025, 0.03067484662576687, 0.04294478527607362, 0.04294478527607362, 0.06748466257668712, 0.9263803680981595, 0.8404907975460123, 0.31901840490797545, 0.03067484662576687, 0.03067484662576687, 0.024539877300613498, 0.024539877300613498, 0.024539877300613498, 0.024539877300613498, 0.024539877300613498, 0.03680981595092025, 0.03067484662576687, 0.03067484662576687, 0.03067484662576687, 0.03067484662576687, 0.03067484662576687, 0.03680981595092025, 0.04294478527607362, 0.049079754601226995, 0.05521472392638037, 0.06134969325153374, 0.06134969325153374, 0.06134969325153374, 0.06748466257668712, 0.06748466257668712, 0.06748466257668712, 0.0736196319018405, 0.0736196319018405, 0.0736196319018405, 0.0736196319018405, 0.07975460122699386, 0.07975460122699386, 0.08588957055214724, 0.09815950920245399, 0.15950920245398773, 0.2085889570552147, 0.2392638036809816, 0.25766871165644173, 0.3128834355828221, 0.4110429447852761, 0.5337423312883436, 0.6687116564417178], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Complex1_30kDa.gap.json b/pfam_gap_rates/Complex1_30kDa.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..78e24c85891b505a09fbd99b6976bccd53d22d9c
--- /dev/null
+++ b/pfam_gap_rates/Complex1_30kDa.gap.json
@@ -0,0 +1 @@
+{"family": "Complex1_30kDa", "n_seqs": 1886, "length": 142, "gap_rates": [0.8573700954400848, 0.35100742311770944, 0.22163308589607636, 0.18928950159066807, 0.1606574761399788, 0.14581124072110285, 0.13414634146341464, 0.1261930010604454, 0.1224814422057264, 0.11770943796394485, 0.09809119830328739, 0.09490986214209968, 0.09331919406150584, 0.09331919406150584, 0.09278897136797455, 0.09225874867444327, 0.0911983032873807, 0.38494167550371156, 0.4220572640509014, 0.33191940615058324, 0.12354188759278897, 0.10180275715800637, 0.12036055143160128, 0.10551431601272535, 0.08271474019088017, 0.06945917285259809, 0.06998939554612937, 0.06733828207847296, 0.06362672322375397, 0.06097560975609756, 0.061505832449628844, 0.060445387062566275, 0.06097560975609756, 0.07211028632025451, 0.17762460233297986, 0.35259809119830327, 0.8022269353128314, 0.8297985153764581, 0.8531283138918345, 0.9337221633085896, 0.9427359490986215, 0.940084835630965, 0.8955461293743372, 0.8430540827147401, 0.8213149522799575, 0.707847295864263, 0.24284199363732767, 0.0816542948038176, 0.05832449628844114, 0.053022269353128315, 0.04772004241781548, 0.048250265111346766, 0.044538706256627786, 0.0440084835630965, 0.0440084835630965, 0.04188759278897137, 0.041357370095440084, 0.0408271474019088, 0.08324496288441145, 0.07104984093319194, 0.9395546129374337, 0.9496288441145281, 0.9162248144220573, 0.061505832449628844, 0.06256627783669141, 0.045068928950159064, 0.9316012725344645, 0.9422057264050901, 0.9061505832449629, 0.037645811240721104, 0.0344644750795334, 0.03340402969247084, 0.032873806998939555, 0.030222693531283137, 0.02704135737009544, 0.026511134676564158, 0.06521739130434782, 0.05620360551431601, 0.06786850477200425, 0.13997879109225875, 0.1129374337221633, 0.8860021208907741, 0.02545068928950159, 0.01855779427359491, 0.18875927889713678, 0.016967126193001062, 0.016967126193001062, 0.015906680805938492, 0.016436903499469777, 0.016967126193001062, 0.016436903499469777, 0.015906680805938492, 0.015906680805938492, 0.015906680805938492, 0.015376458112407211, 0.015376458112407211, 0.015376458112407211, 0.014846235418875928, 0.015906680805938492, 0.015906680805938492, 0.015906680805938492, 0.015906680805938492, 0.015376458112407211, 0.014846235418875928, 0.014846235418875928, 0.009013785790031814, 0.009013785790031814, 0.009544008483563097, 0.009544008483563097, 0.01007423117709438, 0.010604453870625663, 0.014316012725344645, 0.015906680805938492, 0.021739130434782608, 0.031813361611876985, 0.036055143160127257, 0.041357370095440084, 0.04029692470837752, 0.03711558854718982, 0.04029692470837752, 0.044538706256627786, 0.04612937433722163, 0.048250265111346766, 0.049310710498409335, 0.051961823966065745, 0.05567338282078473, 0.9209968186638389, 0.8918345705196182, 0.07794273594909862, 0.08006362672322376, 0.07317073170731707, 0.07158006362672323, 0.07582184517497349, 0.08218451749734888, 0.08642629904559915, 0.09490986214209968, 0.10551431601272535, 0.13997879109225875, 0.20784729586426298, 0.2757158006362672, 0.35737009544008486, 0.6267232237539767], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/CopB.gap.json b/pfam_gap_rates/CopB.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..7c71f38704f40df1e5b9cfe09cd848435ff48126
--- /dev/null
+++ b/pfam_gap_rates/CopB.gap.json
@@ -0,0 +1 @@
+{"family": "CopB", "n_seqs": 221, "length": 215, "gap_rates": [0.5746606334841629, 0.33031674208144796, 0.18099547511312217, 0.13574660633484162, 0.13122171945701358, 0.12669683257918551, 0.12669683257918551, 0.1085972850678733, 0.10407239819004525, 0.10407239819004525, 0.10407239819004525, 0.09954751131221719, 0.167420814479638, 0.16289592760180996, 0.9230769230769231, 0.09049773755656108, 0.08144796380090498, 0.06787330316742081, 0.06787330316742081, 0.06334841628959276, 0.058823529411764705, 0.9411764705882353, 0.049773755656108594, 0.04524886877828054, 0.04524886877828054, 0.03167420814479638, 0.03167420814479638, 0.03167420814479638, 0.03167420814479638, 0.03167420814479638, 0.03167420814479638, 0.03619909502262444, 0.03167420814479638, 0.03167420814479638, 0.03167420814479638, 0.03167420814479638, 0.03167420814479638, 0.03167420814479638, 0.03167420814479638, 0.027149321266968326, 0.027149321266968326, 0.027149321266968326, 0.027149321266968326, 0.027149321266968326, 0.027149321266968326, 0.027149321266968326, 0.027149321266968326, 0.45248868778280543, 0.8280542986425339, 0.058823529411764705, 0.03167420814479638, 0.03167420814479638, 0.03167420814479638, 0.03167420814479638, 0.027149321266968326, 0.027149321266968326, 0.027149321266968326, 0.027149321266968326, 0.027149321266968326, 0.02262443438914027, 0.02262443438914027, 0.02262443438914027, 0.02262443438914027, 0.02262443438914027, 0.02262443438914027, 0.02262443438914027, 0.02262443438914027, 0.02262443438914027, 0.027149321266968326, 0.02262443438914027, 0.02262443438914027, 0.02262443438914027, 0.02262443438914027, 0.02262443438914027, 0.01809954751131222, 0.01809954751131222, 0.01809954751131222, 0.01809954751131222, 0.01809954751131222, 0.01809954751131222, 0.05429864253393665, 0.16289592760180996, 0.8959276018099548, 0.9276018099547512, 0.9049773755656109, 0.7647058823529411, 0.03167420814479638, 0.01809954751131222, 0.01809954751131222, 0.01809954751131222, 0.01809954751131222, 0.01809954751131222, 0.013574660633484163, 0.013574660633484163, 0.013574660633484163, 0.013574660633484163, 0.01809954751131222, 0.013574660633484163, 0.013574660633484163, 0.013574660633484163, 0.013574660633484163, 0.013574660633484163, 0.013574660633484163, 0.013574660633484163, 0.013574660633484163, 0.013574660633484163, 0.013574660633484163, 0.01809954751131222, 0.01809954751131222, 0.02262443438914027, 0.01809954751131222, 0.013574660633484163, 0.013574660633484163, 0.027149321266968326, 0.03619909502262444, 0.013574660633484163, 0.07239819004524888, 0.04524886877828054, 0.01809954751131222, 0.00904977375565611, 0.00904977375565611, 0.00904977375565611, 0.00904977375565611, 0.00904977375565611, 0.00904977375565611, 0.00904977375565611, 0.00904977375565611, 0.00904977375565611, 0.00904977375565611, 0.00904977375565611, 0.00904977375565611, 0.004524886877828055, 0.004524886877828055, 0.004524886877828055, 0.004524886877828055, 0.004524886877828055, 0.004524886877828055, 0.004524886877828055, 0.004524886877828055, 0.004524886877828055, 0.004524886877828055, 0.004524886877828055, 0.004524886877828055, 0.004524886877828055, 0.004524886877828055, 0.00904977375565611, 0.01809954751131222, 0.013574660633484163, 0.013574660633484163, 0.02262443438914027, 0.02262443438914027, 0.013574660633484163, 0.01809954751131222, 0.01809954751131222, 0.013574660633484163, 0.00904977375565611, 0.00904977375565611, 0.00904977375565611, 0.00904977375565611, 0.004524886877828055, 0.004524886877828055, 0.004524886877828055, 0.004524886877828055, 0.004524886877828055, 0.004524886877828055, 0.004524886877828055, 0.004524886877828055, 0.004524886877828055, 0.004524886877828055, 0.004524886877828055, 0.004524886877828055, 0.004524886877828055, 0.9366515837104072, 0.004524886877828055, 0.004524886877828055, 0.004524886877828055, 0.004524886877828055, 0.004524886877828055, 0.004524886877828055, 0.004524886877828055, 0.004524886877828055, 0.004524886877828055, 0.004524886877828055, 0.004524886877828055, 0.00904977375565611, 0.00904977375565611, 0.00904977375565611, 0.013574660633484163, 0.01809954751131222, 0.02262443438914027, 0.03167420814479638, 0.03167420814479638, 0.03167420814479638, 0.03167420814479638, 0.03619909502262444, 0.03619909502262444, 0.03619909502262444, 0.03167420814479638, 0.03167420814479638, 0.03167420814479638, 0.03619909502262444, 0.03619909502262444, 0.02262443438914027, 0.02262443438914027, 0.02262443438914027, 0.02262443438914027, 0.02262443438914027, 0.02262443438914027, 0.02262443438914027, 0.02262443438914027, 0.02262443438914027, 0.027149321266968326, 0.03619909502262444, 0.04524886877828054, 0.058823529411764705], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Copper-fist.gap.json b/pfam_gap_rates/Copper-fist.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..1e7cd58c11db75ee0e23c144fd194a405b13f0bc
--- /dev/null
+++ b/pfam_gap_rates/Copper-fist.gap.json
@@ -0,0 +1 @@
+{"family": "Copper-fist", "n_seqs": 227, "length": 40, "gap_rates": [0.40969162995594716, 0.2422907488986784, 0.16299559471365638, 0.14977973568281938, 0.12334801762114538, 0.11013215859030837, 0.0881057268722467, 0.07488986784140969, 0.07048458149779736, 0.07048458149779736, 0.03524229074889868, 0.022026431718061675, 0.01762114537444934, 0.013215859030837005, 0.00881057268722467, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.8325991189427313, 0.0, 0.00881057268722467, 0.01762114537444934, 0.022026431718061675, 0.02643171806167401, 0.02643171806167401, 0.02643171806167401, 0.02643171806167401, 0.02643171806167401, 0.02643171806167401, 0.02643171806167401, 0.02643171806167401, 0.030837004405286344, 0.030837004405286344, 0.45374449339207046], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/CorC_HlyC.gap.json b/pfam_gap_rates/CorC_HlyC.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a2fbc1aace5ecef810b1208081097db03a72470a
--- /dev/null
+++ b/pfam_gap_rates/CorC_HlyC.gap.json
@@ -0,0 +1 @@
+{"family": "CorC_HlyC", "n_seqs": 4056, "length": 90, "gap_rates": [0.46548323471400394, 0.21375739644970415, 0.11341222879684418, 0.0621301775147929, 0.041913214990138066, 0.03057199211045365, 0.022189349112426034, 0.013806706114398421, 0.007642998027613412, 0.006656804733727811, 0.006656804733727811, 0.006656804733727811, 0.00641025641025641, 0.005670611439842209, 0.004930966469428008, 0.004930966469428008, 0.004930966469428008, 0.004437869822485207, 0.004191321499013806, 0.0039447731755424065, 0.021449704142011833, 0.0036982248520710057, 0.003205128205128205, 0.0029585798816568047, 0.9063116370808678, 0.005177514792899409, 0.9309664694280079, 0.9127218934911243, 0.005917159763313609, 0.004930966469428008, 0.005177514792899409, 0.7218934911242604, 0.009615384615384616, 0.8905325443786982, 0.9324457593688363, 0.8271696252465484, 0.010355029585798817, 0.9450197238658777, 0.005670611439842209, 0.0014792899408284023, 0.001232741617357002, 0.0009861932938856016, 0.0009861932938856016, 0.0009861932938856016, 0.0009861932938856016, 0.0009861932938856016, 0.0002465483234714004, 0.0007396449704142012, 0.001232741617357002, 0.0014792899408284023, 0.0014792899408284023, 0.004684418145956607, 0.005670611439842209, 0.0014792899408284023, 0.0027120315581854043, 0.04659763313609468, 0.0019723865877712033, 0.0017258382642998027, 0.40458579881656803, 0.3979289940828402, 0.008875739644970414, 0.00641025641025641, 0.009368836291913214, 0.4556213017751479, 0.4405818540433925, 0.9292406311637081, 0.0039447731755424065, 0.9479783037475346, 0.9477317554240631, 0.005177514792899409, 0.005670611439842209, 0.005917159763313609, 0.006903353057199211, 0.009368836291913214, 0.009861932938856016, 0.010601577909270217, 0.012080867850098619, 0.01232741617357002, 0.014792899408284023, 0.017011834319526627, 0.01873767258382643, 0.027120315581854043, 0.027613412228796843, 0.029339250493096648, 0.03229783037475345, 0.03747534516765286, 0.05054240631163708, 0.11735700197238659, 0.252465483234714, 0.7127712031558185], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Couple_hipA.gap.json b/pfam_gap_rates/Couple_hipA.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ab861d59f8c8d0112e9522337c178f885c435a39
--- /dev/null
+++ b/pfam_gap_rates/Couple_hipA.gap.json
@@ -0,0 +1 @@
+{"family": "Couple_hipA", "n_seqs": 824, "length": 130, "gap_rates": [0.6941747572815534, 0.44538834951456313, 0.3616504854368932, 0.3446601941747573, 0.33495145631067963, 0.3179611650485437, 0.27427184466019416, 0.20024271844660194, 0.12257281553398058, 0.07888349514563107, 0.0691747572815534, 0.0691747572815534, 0.06796116504854369, 0.06674757281553398, 0.06553398058252427, 0.06310679611650485, 0.9296116504854369, 0.9271844660194175, 0.050970873786407765, 0.07888349514563107, 0.05339805825242718, 0.9308252427184466, 0.7317961165048543, 0.3470873786407767, 0.02912621359223301, 0.024271844660194174, 0.021844660194174758, 0.021844660194174758, 0.021844660194174758, 0.023058252427184466, 0.021844660194174758, 0.023058252427184466, 0.03398058252427184, 0.07645631067961164, 0.07645631067961164, 0.433252427184466, 0.35436893203883496, 0.06432038834951456, 0.04004854368932039, 0.02669902912621359, 0.02063106796116505, 0.019417475728155338, 0.02063106796116505, 0.7220873786407767, 0.02063106796116505, 0.019417475728155338, 0.012135922330097087, 0.013349514563106795, 0.014563106796116505, 0.013349514563106795, 0.9065533980582524, 0.9429611650485437, 0.8907766990291263, 0.010922330097087379, 0.012135922330097087, 0.9235436893203883, 0.9478155339805825, 0.9393203883495146, 0.8992718446601942, 0.015776699029126214, 0.023058252427184466, 0.6019417475728155, 0.7451456310679612, 0.8470873786407767, 0.9077669902912622, 0.8883495145631068, 0.7730582524271845, 0.6650485436893204, 0.5449029126213593, 0.009708737864077669, 0.015776699029126214, 0.010922330097087379, 0.010922330097087379, 0.007281553398058253, 0.006067961165048544, 0.0048543689320388345, 0.0048543689320388345, 0.0048543689320388345, 0.006067961165048544, 0.007281553398058253, 0.007281553398058253, 0.00849514563106796, 0.00849514563106796, 0.00849514563106796, 0.009708737864077669, 0.010922330097087379, 0.8470873786407767, 0.8604368932038835, 0.6929611650485437, 0.013349514563106795, 0.015776699029126214, 0.015776699029126214, 0.015776699029126214, 0.01699029126213592, 0.9259708737864077, 0.9393203883495146, 0.9296116504854369, 0.9150485436893204, 0.019417475728155338, 0.02063106796116505, 0.021844660194174758, 0.025485436893203883, 0.9186893203883495, 0.03033980582524272, 0.03519417475728155, 0.07160194174757281, 0.8131067961165048, 0.9478155339805825, 0.7718446601941747, 0.08131067961165049, 0.07645631067961164, 0.07888349514563107, 0.08373786407766991, 0.08616504854368932, 0.08859223300970874, 0.09101941747572816, 0.09587378640776699, 0.11286407766990292, 0.11650485436893204, 0.12135922330097088, 0.125, 0.12864077669902912, 0.12742718446601942, 0.13106796116504854, 0.13228155339805825, 0.1395631067961165, 0.1395631067961165, 0.14805825242718446, 0.16019417475728157, 0.20631067961165048], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/CsbD.gap.json b/pfam_gap_rates/CsbD.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ea83f3a72294f027cc843b6b7a94860999371900
--- /dev/null
+++ b/pfam_gap_rates/CsbD.gap.json
@@ -0,0 +1 @@
+{"family": "CsbD", "n_seqs": 1032, "length": 53, "gap_rates": [0.27325581395348836, 0.14728682170542637, 0.07170542635658915, 0.031007751937984496, 0.01744186046511628, 0.011627906976744186, 0.005813953488372093, 0.0009689922480620155, 0.0009689922480620155, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0009689922480620155, 0.0009689922480620155, 0.0009689922480620155, 0.0009689922480620155, 0.0009689922480620155, 0.0009689922480620155, 0.001937984496124031, 0.001937984496124031, 0.0048449612403100775, 0.00872093023255814, 0.01744186046511628, 0.018410852713178296, 0.022286821705426358, 0.031007751937984496, 0.06686046511627906, 0.10174418604651163, 0.18604651162790697, 0.5368217054263565], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/CsiV.gap.json b/pfam_gap_rates/CsiV.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..25c4713f82424fc91de04356ec57d745b6df74e4
--- /dev/null
+++ b/pfam_gap_rates/CsiV.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Cu_amine_oxidN3.gap.json b/pfam_gap_rates/Cu_amine_oxidN3.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c33f359c2059fa54d1e13ddc2bca34699597a903
--- /dev/null
+++ b/pfam_gap_rates/Cu_amine_oxidN3.gap.json
@@ -0,0 +1 @@
+{"family": "Cu_amine_oxidN3", "n_seqs": 532, "length": 113, "gap_rates": [0.3157894736842105, 0.20112781954887218, 0.12406015037593984, 0.10526315789473684, 0.08834586466165413, 0.05827067669172932, 0.043233082706766915, 0.039473684210526314, 0.03759398496240601, 0.03571428571428571, 0.03383458646616541, 0.03007518796992481, 0.03007518796992481, 0.03007518796992481, 0.03007518796992481, 0.03007518796992481, 0.9360902255639098, 0.9116541353383458, 0.02819548872180451, 0.02819548872180451, 0.02819548872180451, 0.02631578947368421, 0.02631578947368421, 0.02631578947368421, 0.02631578947368421, 0.02631578947368421, 0.02631578947368421, 0.02443609022556391, 0.02443609022556391, 0.02819548872180451, 0.03195488721804511, 0.9473684210526315, 0.7781954887218046, 0.2800751879699248, 0.03571428571428571, 0.07330827067669173, 0.8590225563909775, 0.03195488721804511, 0.013157894736842105, 0.013157894736842105, 0.011278195488721804, 0.011278195488721804, 0.011278195488721804, 0.011278195488721804, 0.011278195488721804, 0.011278195488721804, 0.011278195488721804, 0.011278195488721804, 0.011278195488721804, 0.013157894736842105, 0.011278195488721804, 0.009398496240601503, 0.013157894736842105, 0.013157894736842105, 0.013157894736842105, 0.9191729323308271, 0.6541353383458647, 0.2894736842105263, 0.022556390977443608, 0.015037593984962405, 0.005639097744360902, 0.005639097744360902, 0.007518796992481203, 0.005639097744360902, 0.005639097744360902, 0.005639097744360902, 0.009398496240601503, 0.007518796992481203, 0.007518796992481203, 0.007518796992481203, 0.0037593984962406013, 0.005639097744360902, 0.005639097744360902, 0.08082706766917293, 0.7669172932330827, 0.8157894736842105, 0.9266917293233082, 0.7875939849624061, 0.33646616541353386, 0.07706766917293233, 0.0037593984962406013, 0.0037593984962406013, 0.0018796992481203006, 0.0018796992481203006, 0.0018796992481203006, 0.0018796992481203006, 0.0018796992481203006, 0.5037593984962406, 0.0037593984962406013, 0.0018796992481203006, 0.0018796992481203006, 0.007518796992481203, 0.009398496240601503, 0.009398496240601503, 0.011278195488721804, 0.011278195488721804, 0.011278195488721804, 0.016917293233082706, 0.020676691729323307, 0.022556390977443608, 0.02443609022556391, 0.03007518796992481, 0.03195488721804511, 0.05639097744360902, 0.12406015037593984, 0.16353383458646617, 0.19548872180451127, 0.6466165413533834, 0.35526315789473684, 0.37593984962406013, 0.3890977443609023, 0.4342105263157895, 0.7556390977443609], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Cu_bind_like.gap.json b/pfam_gap_rates/Cu_bind_like.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f97e9faee5c6de8f3646e22ca544ac88d65a76c4
--- /dev/null
+++ b/pfam_gap_rates/Cu_bind_like.gap.json
@@ -0,0 +1 @@
+{"family": "Cu_bind_like", "n_seqs": 1388, "length": 97, "gap_rates": [0.4762247838616715, 0.41570605187319887, 0.3537463976945245, 0.3249279538904899, 0.3134005763688761, 0.6678674351585014, 0.8695965417867435, 0.9402017291066282, 0.7831412103746398, 0.5677233429394812, 0.17507204610951008, 0.1585014409221902, 0.08645533141210375, 0.07276657060518732, 0.07276657060518732, 0.07204610951008646, 0.07060518731988473, 0.06772334293948126, 0.0670028818443804, 0.06556195965417867, 0.061239193083573486, 0.048270893371757925, 0.04755043227665706, 0.04755043227665706, 0.04610951008645533, 0.04394812680115274, 0.04178674351585014, 0.029538904899135448, 0.023054755043227664, 0.0223342939481268, 0.0223342939481268, 0.021613832853025938, 0.024495677233429394, 0.02521613832853026, 0.24351585014409222, 0.07420749279538905, 0.018731988472622477, 0.018731988472622477, 0.01729106628242075, 0.013688760806916427, 0.013688760806916427, 0.01585014409221902, 0.8652737752161384, 0.020172910662824207, 0.020172910662824207, 0.02089337175792507, 0.02089337175792507, 0.018011527377521614, 0.01440922190201729, 0.013688760806916427, 0.015129682997118156, 0.01585014409221902, 0.016570605187319884, 0.018731988472622477, 0.8796829971181557, 0.024495677233429394, 0.03386167146974063, 0.030979827089337175, 0.025936599423631124, 0.020172910662824207, 0.018731988472622477, 0.8717579250720461, 0.9185878962536023, 0.9459654178674352, 0.9301152737752162, 0.9020172910662824, 0.8559077809798271, 0.021613832853025938, 0.021613832853025938, 0.024495677233429394, 0.023054755043227664, 0.0223342939481268, 0.024495677233429394, 0.026657060518731988, 0.025936599423631124, 0.028097982708933718, 0.03025936599423631, 0.16930835734870317, 0.03025936599423631, 0.03170028818443804, 0.035302593659942365, 0.0345821325648415, 0.03602305475504323, 0.037463976945244955, 0.04106628242074928, 0.043227665706051875, 0.05547550432276657, 0.06772334293948126, 0.9272334293948127, 0.9243515850144092, 0.04971181556195965, 0.051152737752161385, 0.05187319884726225, 0.05547550432276657, 0.07564841498559077, 0.12175792507204611, 0.265850144092219], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Cullin_binding.gap.json b/pfam_gap_rates/Cullin_binding.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..7734d4d8d69f7327b7f21e3b00caf26f0baff1e2
--- /dev/null
+++ b/pfam_gap_rates/Cullin_binding.gap.json
@@ -0,0 +1 @@
+{"family": "Cullin_binding", "n_seqs": 581, "length": 137, "gap_rates": [0.7418244406196214, 0.41480206540447506, 0.33218588640275387, 0.29259896729776247, 0.27538726333907054, 0.24096385542168675, 0.22030981067125646, 0.2117039586919105, 0.20309810671256454, 0.19793459552495696, 0.18416523235800344, 0.1738382099827883, 0.16006884681583478, 0.7246127366609294, 0.14113597246127366, 0.11359724612736662, 0.10154905335628227, 0.08605851979345955, 0.08089500860585198, 0.0774526678141136, 0.0757314974182444, 0.07401032702237521, 0.07228915662650602, 0.07228915662650602, 0.07228915662650602, 0.06884681583476764, 0.06884681583476764, 0.06884681583476764, 0.06884681583476764, 0.06884681583476764, 0.06540447504302926, 0.06368330464716007, 0.07401032702237521, 0.8984509466437177, 0.7796901893287436, 0.06884681583476764, 0.06540447504302926, 0.06196213425129088, 0.060240963855421686, 0.055077452667814115, 0.04991394148020654, 0.03614457831325301, 0.03098106712564544, 0.025817555938037865, 0.024096385542168676, 0.024096385542168676, 0.025817555938037865, 0.024096385542168676, 0.020654044750430294, 0.020654044750430294, 0.0189328743545611, 0.020654044750430294, 0.020654044750430294, 0.020654044750430294, 0.020654044750430294, 0.04130808950086059, 0.04130808950086059, 0.8072289156626506, 0.8382099827882961, 0.8898450946643718, 0.9363166953528399, 0.9397590361445783, 0.9225473321858864, 0.8485370051635112, 0.8296041308089501, 0.6643717728055077, 0.04647160068846816, 0.20137693631669534, 0.03614457831325301, 0.8089500860585198, 0.8450946643717728, 0.9018932874354562, 0.919104991394148, 0.9466437177280551, 0.9104991394148021, 0.8846815834767642, 0.8175559380378657, 0.6987951807228916, 0.05335628227194492, 0.024096385542168676, 0.022375215146299483, 0.022375215146299483, 0.013769363166953529, 0.013769363166953529, 0.013769363166953529, 0.013769363166953529, 0.0189328743545611, 0.01549053356282272, 0.01721170395869191, 0.9139414802065404, 0.76592082616179, 0.0189328743545611, 0.9053356282271945, 0.04475043029259897, 0.022375215146299483, 0.01549053356282272, 0.01549053356282272, 0.013769363166953529, 0.013769363166953529, 0.012048192771084338, 0.012048192771084338, 0.012048192771084338, 0.012048192771084338, 0.013769363166953529, 0.012048192771084338, 0.012048192771084338, 0.013769363166953529, 0.012048192771084338, 0.013769363166953529, 0.013769363166953529, 0.027538726333907058, 0.027538726333907058, 0.1944922547332186, 0.21686746987951808, 0.6729776247848537, 0.5628227194492255, 0.03270223752151463, 0.03098106712564544, 0.03098106712564544, 0.03270223752151463, 0.03270223752151463, 0.03270223752151463, 0.03442340791738382, 0.04130808950086059, 0.04819277108433735, 0.07056798623063683, 0.07917383820998279, 0.08089500860585198, 0.08261617900172118, 0.08261617900172118, 0.08261617900172118, 0.08261617900172118, 0.08261617900172118, 0.08950086058519793, 0.09466437177280551, 0.10327022375215146, 0.14285714285714285], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Cupredoxin_1.gap.json b/pfam_gap_rates/Cupredoxin_1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f317048ea4aa1b820595e846db8be795b76882ce
--- /dev/null
+++ b/pfam_gap_rates/Cupredoxin_1.gap.json
@@ -0,0 +1 @@
+{"family": "Cupredoxin_1", "n_seqs": 1295, "length": 133, "gap_rates": [0.8965250965250965, 0.8216216216216217, 0.7629343629343629, 0.722007722007722, 0.6749034749034749, 0.6517374517374518, 0.6316602316602317, 0.6223938223938223, 0.6092664092664093, 0.5891891891891892, 0.5745173745173745, 0.555984555984556, 0.532046332046332, 0.5019305019305019, 0.40772200772200773, 0.7575289575289575, 0.8007722007722008, 0.857915057915058, 0.9397683397683397, 0.911969111969112, 0.8231660231660232, 0.7822393822393823, 0.7235521235521235, 0.28262548262548265, 0.22934362934362934, 0.18996138996138995, 0.15907335907335907, 0.13822393822393822, 0.11969111969111969, 0.09884169884169884, 0.08648648648648649, 0.07876447876447877, 0.077992277992278, 0.0694980694980695, 0.11119691119691119, 0.14208494208494207, 0.02702702702702703, 0.938996138996139, 0.9312741312741313, 0.01698841698841699, 0.012355212355212355, 0.009266409266409266, 0.009266409266409266, 0.011583011583011582, 0.008494208494208495, 0.0069498069498069494, 0.005405405405405406, 0.005405405405405406, 0.003861003861003861, 0.003861003861003861, 0.004633204633204633, 0.004633204633204633, 0.25328185328185326, 0.14903474903474903, 0.012355212355212355, 0.005405405405405406, 0.0007722007722007722, 0.0015444015444015444, 0.0015444015444015444, 0.008494208494208495, 0.009266409266409266, 0.02857142857142857, 0.025482625482625483, 0.02084942084942085, 0.01776061776061776, 0.6401544401544401, 0.9243243243243243, 0.5814671814671815, 0.0023166023166023165, 0.0015444015444015444, 0.0007722007722007722, 0.0015444015444015444, 0.003088803088803089, 0.003088803088803089, 0.0069498069498069494, 0.7992277992277992, 0.8401544401544402, 0.9204633204633205, 0.9498069498069498, 0.8810810810810811, 0.8223938223938224, 0.7621621621621621, 0.011583011583011582, 0.016216216216216217, 0.016216216216216217, 0.0749034749034749, 0.8934362934362934, 0.03552123552123552, 0.013899613899613899, 0.016216216216216217, 0.013899613899613899, 0.01698841698841699, 0.014671814671814672, 0.015444015444015444, 0.016216216216216217, 0.03783783783783784, 0.039382239382239385, 0.03552123552123552, 0.023166023166023165, 0.08957528957528957, 0.2386100386100386, 0.1783783783783784, 0.044015444015444015, 0.043243243243243246, 0.044787644787644784, 0.04555984555984556, 0.04864864864864865, 0.050965250965250966, 0.050965250965250966, 0.050965250965250966, 0.05019305019305019, 0.050965250965250966, 0.05405405405405406, 0.8972972972972973, 0.9312741312741313, 0.938996138996139, 0.9266409266409267, 0.8694980694980695, 0.08416988416988418, 0.10656370656370656, 0.12586872586872586, 0.9351351351351351, 0.9451737451737452, 0.9173745173745174, 0.15444015444015444, 0.7783783783783784, 0.5081081081081081, 0.21003861003861005, 0.22007722007722008, 0.26563706563706563, 0.28957528957528955, 0.41312741312741313, 0.46023166023166023], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/CxxCxxCC.gap.json b/pfam_gap_rates/CxxCxxCC.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..2e13e8bf0ab18f9316bd4db5e4cb3f768e4c934f
--- /dev/null
+++ b/pfam_gap_rates/CxxCxxCC.gap.json
@@ -0,0 +1 @@
+{"family": "CxxCxxCC", "n_seqs": 1825, "length": 147, "gap_rates": [0.623013698630137, 0.08986301369863013, 0.08986301369863013, 0.03726027397260274, 0.9452054794520548, 0.7095890410958904, 0.027945205479452055, 0.8241095890410959, 0.027945205479452055, 0.0273972602739726, 0.0273972602739726, 0.0263013698630137, 0.0263013698630137, 0.7375342465753425, 0.8553424657534247, 0.8854794520547945, 0.8980821917808219, 0.9145205479452054, 0.9216438356164384, 0.938082191780822, 0.9167123287671233, 0.9052054794520548, 0.8942465753424658, 0.8734246575342466, 0.8323287671232876, 0.6695890410958905, 0.35726027397260274, 0.29424657534246573, 0.26794520547945205, 0.08493150684931507, 0.08164383561643836, 0.052054794520547946, 0.043835616438356165, 0.04876712328767123, 0.04821917808219178, 0.04657534246575343, 0.044931506849315066, 0.041643835616438356, 0.043835616438356165, 0.04547945205479452, 0.04547945205479452, 0.04438356164383562, 0.04547945205479452, 0.04821917808219178, 0.052054794520547946, 0.34356164383561644, 0.3167123287671233, 0.2926027397260274, 0.28493150684931506, 0.28, 0.28054794520547943, 0.2810958904109589, 0.28712328767123285, 0.2958904109589041, 0.30684931506849317, 0.376986301369863, 0.27945205479452057, 0.3747945205479452, 0.40657534246575344, 0.4432876712328767, 0.4767123287671233, 0.5473972602739726, 0.6153424657534247, 0.6465753424657534, 0.6991780821917808, 0.7643835616438356, 0.8443835616438357, 0.8701369863013698, 0.8986301369863013, 0.9221917808219178, 0.9386301369863014, 0.949041095890411, 0.9441095890410959, 0.9364383561643835, 0.9123287671232877, 0.8843835616438356, 0.8591780821917808, 0.7928767123287671, 0.7397260273972602, 0.6723287671232877, 0.6328767123287671, 0.572054794520548, 0.49753424657534245, 0.4619178082191781, 0.4208219178082192, 0.3906849315068493, 0.3567123287671233, 0.26136986301369863, 0.25315068493150683, 0.2515068493150685, 0.000547945205479452, 0.000547945205479452, 0.000547945205479452, 0.000547945205479452, 0.001095890410958904, 0.000547945205479452, 0.000547945205479452, 0.001095890410958904, 0.3336986301369863, 0.3972602739726027, 0.8882191780821918, 0.9117808219178082, 0.8827397260273973, 0.021369863013698632, 0.0, 0.0, 0.0, 0.000547945205479452, 0.000547945205479452, 0.949041095890411, 0.000547945205479452, 0.0, 0.8126027397260274, 0.8136986301369863, 0.8131506849315069, 0.812054794520548, 0.000547945205479452, 0.000547945205479452, 0.000547945205479452, 0.001095890410958904, 0.001095890410958904, 0.009863013698630137, 0.024657534246575342, 0.07506849315068494, 0.1052054794520548, 0.37424657534246575, 0.76, 0.8158904109589041, 0.915068493150685, 0.9473972602739726, 0.9265753424657535, 0.8405479452054795, 0.7901369863013699, 0.7473972602739726, 0.4695890410958904, 0.5501369863013699, 0.5397260273972603, 0.5506849315068493, 0.5605479452054795, 0.570958904109589, 0.5950684931506849, 0.6120547945205479, 0.6284931506849315, 0.6394520547945205, 0.6471232876712328, 0.6520547945205479, 0.8126027397260274], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Cys_rich_KTR.gap.json b/pfam_gap_rates/Cys_rich_KTR.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f726c6a15316fe3da088b7bbf8446d0a1fdded1c
--- /dev/null
+++ b/pfam_gap_rates/Cys_rich_KTR.gap.json
@@ -0,0 +1 @@
+{"family": "Cys_rich_KTR", "n_seqs": 101, "length": 54, "gap_rates": [0.8316831683168316, 0.06930693069306931, 0.0297029702970297, 0.009900990099009901, 0.009900990099009901, 0.009900990099009901, 0.009900990099009901, 0.009900990099009901, 0.009900990099009901, 0.009900990099009901, 0.009900990099009901, 0.019801980198019802, 0.009900990099009901, 0.019801980198019802, 0.009900990099009901, 0.009900990099009901, 0.0, 0.0, 0.0, 0.0, 0.009900990099009901, 0.009900990099009901, 0.009900990099009901, 0.009900990099009901, 0.009900990099009901, 0.009900990099009901, 0.009900990099009901, 0.009900990099009901, 0.009900990099009901, 0.009900990099009901, 0.009900990099009901, 0.009900990099009901, 0.009900990099009901, 0.009900990099009901, 0.009900990099009901, 0.009900990099009901, 0.009900990099009901, 0.009900990099009901, 0.009900990099009901, 0.009900990099009901, 0.009900990099009901, 0.019801980198019802, 0.039603960396039604, 0.04950495049504951, 0.06930693069306931, 0.06930693069306931, 0.06930693069306931, 0.07920792079207921, 0.21782178217821782, 0.18811881188118812, 0.2376237623762376, 0.297029702970297, 0.3069306930693069, 0.42574257425742573], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Cyt_bd_oxida_I.gap.json b/pfam_gap_rates/Cyt_bd_oxida_I.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..98eab3cd2ad790a0537fc5f7d42cd09fddd6c0b2
--- /dev/null
+++ b/pfam_gap_rates/Cyt_bd_oxida_I.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Cytochrom_B561.gap.json b/pfam_gap_rates/Cytochrom_B561.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..8fe70ee03305ebaf4e909b8bc5b84faa70ab0b9f
--- /dev/null
+++ b/pfam_gap_rates/Cytochrom_B561.gap.json
@@ -0,0 +1 @@
+{"family": "Cytochrom_B561", "n_seqs": 1219, "length": 148, "gap_rates": [0.4889253486464315, 0.16488925348646433, 0.16324856439704677, 0.15586546349466776, 0.15258408531583265, 0.14602132895816242, 0.13781788351107466, 0.13781788351107466, 0.13863822805578344, 0.13863822805578344, 0.12715340442986053, 0.12469237079573421, 0.11977030352748154, 0.11812961443806398, 0.13289581624282198, 0.10008203445447088, 0.09762100082034454, 0.09598031173092698, 0.09433962264150944, 0.09351927809680066, 0.09433962264150944, 0.09351927809680066, 0.7850697292863003, 0.09433962264150944, 0.4446267432321575, 0.45118949958982774, 0.8072190319934373, 0.24200164068908941, 0.3314191960623462, 0.25184577522559476, 0.20344544708777687, 0.10992616899097621, 0.10090237899917966, 0.0771123872026251, 0.054963084495488104, 0.04593929450369155, 0.04101722723543889, 0.03281378178835111, 0.02871205906480722, 0.02871205906480722, 0.02789171452009844, 0.026251025430680888, 0.02378999179655455, 0.02132895816242822, 0.019688269073010665, 0.020508613617719443, 0.019688269073010665, 0.018867924528301886, 0.018867924528301886, 0.01804757998359311, 0.01804757998359311, 0.01804757998359311, 0.017227235438884332, 0.017227235438884332, 0.017227235438884332, 0.017227235438884332, 0.016406890894175553, 0.018867924528301886, 0.019688269073010665, 0.018867924528301886, 0.018867924528301886, 0.02132895816242822, 0.022969647251845776, 0.17063166529942575, 0.29942575881870387, 0.9401148482362592, 0.9474979491386383, 0.9228876127973749, 0.20672682526661199, 0.9360131255127153, 0.9163248564397046, 0.11977030352748154, 0.04019688269073011, 0.03281378178835111, 0.03281378178835111, 0.030352748154224774, 0.031173092698933553, 0.02378999179655455, 0.020508613617719443, 0.020508613617719443, 0.020508613617719443, 0.020508613617719443, 0.02132895816242822, 0.02132895816242822, 0.022149302707136997, 0.02378999179655455, 0.02461033634126333, 0.022969647251845776, 0.02132895816242822, 0.02132895816242822, 0.02461033634126333, 0.026251025430680888, 0.02543068088597211, 0.02543068088597211, 0.1173092698933552, 0.16652994257588188, 0.18949958982772763, 0.10828547990155865, 0.07383100902378999, 0.06644790812141099, 0.07875307629204266, 0.06972928630024611, 0.1722723543888433, 0.9204265791632485, 0.9376538146021329, 0.9105824446267432, 0.08613617719442165, 0.06890894175553733, 0.05824446267432322, 0.05332239540607055, 0.05004101722723544, 0.09844134536505332, 0.07793273174733388, 0.04922067268252666, 0.043478260869565216, 0.04101722723543889, 0.03773584905660377, 0.03773584905660377, 0.03773584905660377, 0.03855619360131255, 0.9442165709598032, 0.8400328137817884, 0.03855619360131255, 0.03855619360131255, 0.03855619360131255, 0.03855619360131255, 0.03937653814602133, 0.03937653814602133, 0.04019688269073011, 0.04183757178014766, 0.043478260869565216, 0.043478260869565216, 0.043478260869565216, 0.044298605414273995, 0.0475799835931091, 0.0475799835931091, 0.0475799835931091, 0.04922067268252666, 0.05578342904019688, 0.05988515176374077, 0.07301066447908121, 0.08695652173913043, 0.5586546349466776, 0.5627563576702215, 0.6251025430680885, 0.6529942575881871, 0.6767842493847416, 0.726825266611977], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Cytochrom_CIII.gap.json b/pfam_gap_rates/Cytochrom_CIII.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..dd56390298cda0e70545a8e3133f4521883cc329
--- /dev/null
+++ b/pfam_gap_rates/Cytochrom_CIII.gap.json
@@ -0,0 +1 @@
+{"family": "Cytochrom_CIII", "n_seqs": 401, "length": 135, "gap_rates": [0.9451371571072319, 0.9301745635910225, 0.9002493765586035, 0.8678304239401496, 0.8379052369077307, 0.8204488778054863, 0.7955112219451371, 0.7755610972568578, 0.7381546134663342, 0.7256857855361596, 0.7331670822942643, 0.9451371571072319, 0.3690773067331671, 0.24937655860349128, 0.22443890274314215, 0.1970074812967581, 0.1770573566084788, 0.16458852867830423, 0.14214463840399003, 0.13466334164588528, 0.12219451371571072, 0.09725685785536159, 0.08728179551122195, 0.05236907730673317, 0.0399002493765586, 0.04239401496259352, 0.6384039900249376, 0.0399002493765586, 0.0399002493765586, 0.14713216957605985, 0.7581047381546134, 0.9276807980049875, 0.8753117206982544, 0.32917705735660846, 0.00997506234413965, 0.004987531172069825, 0.004987531172069825, 0.0024937655860349127, 0.0024937655860349127, 0.0, 0.0, 0.0, 0.47880299251870323, 0.5361596009975063, 0.7830423940149626, 0.8528678304239401, 0.7930174563591023, 0.543640897755611, 0.48877805486284287, 0.4114713216957606, 0.18952618453865336, 0.09226932668329177, 0.07231920199501247, 0.06483790523690773, 0.05236907730673317, 0.004987531172069825, 0.004987531172069825, 0.004987531172069825, 0.004987531172069825, 0.004987531172069825, 0.00997506234413965, 0.017456359102244388, 0.9152119700748129, 0.8977556109725686, 0.022443890274314215, 0.032418952618453865, 0.03740648379052369, 0.03740648379052369, 0.05236907730673317, 0.30174563591022446, 0.7306733167082294, 0.8902743142144638, 0.9326683291770573, 0.9102244389027432, 0.8728179551122195, 0.5835411471321695, 0.2144638403990025, 0.19201995012468828, 0.19451371571072318, 0.18952618453865336, 0.2144638403990025, 0.20448877805486285, 0.2119700748129676, 0.2119700748129676, 0.9476309226932669, 0.940149625935162, 0.22942643391521197, 0.22942643391521197, 0.23192019950124687, 0.22942643391521197, 0.24438902743142144, 0.2518703241895262, 0.6907730673316709, 0.6932668329177057, 0.6957605985037406, 0.6907730673316709, 0.9476309226932669, 0.9326683291770573, 0.6957605985037406, 0.27680798004987534, 0.27680798004987534, 0.27680798004987534, 0.27680798004987534, 0.27680798004987534, 0.27680798004987534, 0.2793017456359102, 0.286783042394015, 0.2942643391521197, 0.314214463840399, 0.5087281795511222, 0.5236907730673317, 0.5635910224438903, 0.571072319201995, 0.5785536159600998, 0.8354114713216958, 0.8977556109725686, 0.9102244389027432, 0.9226932668329177, 0.9301745635910225, 0.9476309226932669, 0.9226932668329177, 0.9152119700748129, 0.9027431421446384, 0.8728179551122195, 0.7955112219451371, 0.456359102244389, 0.40399002493765584, 0.38403990024937656, 0.38154613466334164, 0.38154613466334164, 0.3790523690773067, 0.38154613466334164, 0.38154613466334164, 0.38403990024937656, 0.3915211970074813], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Cytochrome_P460.gap.json b/pfam_gap_rates/Cytochrome_P460.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c7d76d91a7abda2858d81437cf561e1b63b96755
--- /dev/null
+++ b/pfam_gap_rates/Cytochrome_P460.gap.json
@@ -0,0 +1 @@
+{"family": "Cytochrome_P460", "n_seqs": 161, "length": 162, "gap_rates": [0.5217391304347826, 0.4409937888198758, 0.3105590062111801, 0.2919254658385093, 0.2857142857142857, 0.2857142857142857, 0.2795031055900621, 0.2608695652173913, 0.2484472049689441, 0.2546583850931677, 0.2360248447204969, 0.21739130434782608, 0.21739130434782608, 0.19875776397515527, 0.19254658385093168, 0.19254658385093168, 0.4161490683229814, 0.2422360248447205, 0.19254658385093168, 0.6149068322981367, 0.7267080745341615, 0.7950310559006211, 0.8695652173913043, 0.7763975155279503, 0.6583850931677019, 0.5652173913043478, 0.11801242236024845, 0.11180124223602485, 0.10559006211180125, 0.10559006211180125, 0.09937888198757763, 0.09937888198757763, 0.09937888198757763, 0.09937888198757763, 0.09937888198757763, 0.09937888198757763, 0.09937888198757763, 0.09937888198757763, 0.09937888198757763, 0.09937888198757763, 0.09937888198757763, 0.09937888198757763, 0.09316770186335403, 0.08695652173913043, 0.08074534161490683, 0.14906832298136646, 0.11801242236024845, 0.7204968944099379, 0.9006211180124224, 0.9316770186335404, 0.8757763975155279, 0.5590062111801242, 0.06832298136645963, 0.043478260869565216, 0.024844720496894408, 0.024844720496894408, 0.024844720496894408, 0.024844720496894408, 0.018633540372670808, 0.018633540372670808, 0.018633540372670808, 0.012422360248447204, 0.018633540372670808, 0.018633540372670808, 0.018633540372670808, 0.018633540372670808, 0.037267080745341616, 0.049689440993788817, 0.062111801242236024, 0.09316770186335403, 0.4161490683229814, 0.8385093167701864, 0.8695652173913043, 0.9440993788819876, 0.8695652173913043, 0.8633540372670807, 0.7888198757763976, 0.39751552795031053, 0.33540372670807456, 0.6459627329192547, 0.20496894409937888, 0.19254658385093168, 0.18633540372670807, 0.16770186335403728, 0.13664596273291926, 0.12422360248447205, 0.08695652173913043, 0.043478260869565216, 0.024844720496894408, 0.018633540372670808, 0.018633540372670808, 0.012422360248447204, 0.012422360248447204, 0.012422360248447204, 0.012422360248447204, 0.012422360248447204, 0.012422360248447204, 0.012422360248447204, 0.024844720496894408, 0.9130434782608695, 0.11801242236024845, 0.08074534161490683, 0.055900621118012424, 0.049689440993788817, 0.7763975155279503, 0.8633540372670807, 0.8819875776397516, 0.8695652173913043, 0.7950310559006211, 0.7639751552795031, 0.062111801242236024, 0.043478260869565216, 0.7639751552795031, 0.012422360248447204, 0.012422360248447204, 0.018633540372670808, 0.018633540372670808, 0.018633540372670808, 0.018633540372670808, 0.018633540372670808, 0.018633540372670808, 0.018633540372670808, 0.018633540372670808, 0.024844720496894408, 0.024844720496894408, 0.4968944099378882, 0.45962732919254656, 0.7888198757763976, 0.8695652173913043, 0.9006211180124224, 0.9130434782608695, 0.937888198757764, 0.9006211180124224, 0.8881987577639752, 0.8322981366459627, 0.6583850931677019, 0.2236024844720497, 0.06832298136645963, 0.024844720496894408, 0.024844720496894408, 0.024844720496894408, 0.024844720496894408, 0.024844720496894408, 0.024844720496894408, 0.024844720496894408, 0.024844720496894408, 0.024844720496894408, 0.024844720496894408, 0.024844720496894408, 0.024844720496894408, 0.024844720496894408, 0.8881987577639752, 0.037267080745341616, 0.037267080745341616, 0.037267080745341616, 0.049689440993788817, 0.06832298136645963, 0.07453416149068323, 0.07453416149068323, 0.09937888198757763, 0.12422360248447205, 0.4658385093167702], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/D-ser_dehydrat.gap.json b/pfam_gap_rates/D-ser_dehydrat.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..902495bec29aa6a695322f6646f9bae8f00ab90f
--- /dev/null
+++ b/pfam_gap_rates/D-ser_dehydrat.gap.json
@@ -0,0 +1 @@
+{"family": "D-ser_dehydrat", "n_seqs": 740, "length": 131, "gap_rates": [0.11891891891891893, 0.05675675675675676, 0.024324324324324326, 0.01756756756756757, 0.016216216216216217, 0.016216216216216217, 0.014864864864864866, 0.010810810810810811, 0.010810810810810811, 0.00945945945945946, 0.00945945945945946, 0.00945945945945946, 0.014864864864864866, 0.00945945945945946, 0.016216216216216217, 0.07297297297297298, 0.8608108108108108, 0.8851351351351351, 0.9297297297297298, 0.904054054054054, 0.8621621621621621, 0.672972972972973, 0.00945945945945946, 0.00945945945945946, 0.00945945945945946, 0.008108108108108109, 0.008108108108108109, 0.008108108108108109, 0.008108108108108109, 0.008108108108108109, 0.008108108108108109, 0.008108108108108109, 0.008108108108108109, 0.008108108108108109, 0.008108108108108109, 0.7081081081081081, 0.7297297297297297, 0.8716216216216216, 0.95, 0.9297297297297298, 0.7567567567567568, 0.7162162162162162, 0.6391891891891892, 0.34324324324324323, 0.5405405405405406, 0.11756756756756757, 0.0918918918918919, 0.07702702702702703, 0.07297297297297298, 0.9432432432432433, 0.25135135135135134, 0.22972972972972974, 0.07162162162162163, 0.062162162162162166, 0.07162162162162163, 0.1972972972972973, 0.23513513513513515, 0.4905405405405405, 0.42567567567567566, 0.5986486486486486, 0.7040540540540541, 0.7716216216216216, 0.8513513513513513, 0.8945945945945946, 0.9216216216216216, 0.9378378378378378, 0.9054054054054054, 0.8810810810810811, 0.8094594594594594, 0.7351351351351352, 0.6148648648648649, 0.5635135135135135, 0.18513513513513513, 0.10675675675675676, 0.04594594594594595, 0.02027027027027027, 0.32837837837837835, 0.34864864864864864, 0.33918918918918917, 0.30945945945945946, 0.008108108108108109, 0.006756756756756757, 0.006756756756756757, 0.006756756756756757, 0.006756756756756757, 0.006756756756756757, 0.006756756756756757, 0.006756756756756757, 0.006756756756756757, 0.006756756756756757, 0.006756756756756757, 0.013513513513513514, 0.2756756756756757, 0.12837837837837837, 0.3945945945945946, 0.7445945945945946, 0.8851351351351351, 0.9432432432432433, 0.918918918918919, 0.8108108108108109, 0.6797297297297298, 0.3864864864864865, 0.02027027027027027, 0.00945945945945946, 0.006756756756756757, 0.006756756756756757, 0.008108108108108109, 0.008108108108108109, 0.008108108108108109, 0.010810810810810811, 0.010810810810810811, 0.010810810810810811, 0.010810810810810811, 0.010810810810810811, 0.010810810810810811, 0.013513513513513514, 0.013513513513513514, 0.013513513513513514, 0.014864864864864866, 0.014864864864864866, 0.014864864864864866, 0.014864864864864866, 0.014864864864864866, 0.01756756756756757, 0.01756756756756757, 0.02027027027027027, 0.021621621621621623, 0.02702702702702703, 0.07027027027027027, 0.22567567567567567, 0.5094594594594595], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DAGK_prokar.gap.json b/pfam_gap_rates/DAGK_prokar.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..39cc77789fb185ded12df18af94580c1ba7dc15a
--- /dev/null
+++ b/pfam_gap_rates/DAGK_prokar.gap.json
@@ -0,0 +1 @@
+{"family": "DAGK_prokar", "n_seqs": 1227, "length": 103, "gap_rates": [0.5729421352893236, 0.07986960065199673, 0.04808475957620212, 0.037489812550937245, 0.034229828850855744, 0.03341483292583537, 0.032599837000814993, 0.029339853300733496, 0.027709861450692746, 0.027709861450692746, 0.02689486552567237, 0.04808475957620212, 0.06356968215158924, 0.02444987775061125, 0.02444987775061125, 0.02444987775061125, 0.017114914425427872, 0.017114914425427872, 0.017114914425427872, 0.017114914425427872, 0.017114914425427872, 0.016299918500407497, 0.015484922575387123, 0.014669926650366748, 0.013854930725346373, 0.013854930725346373, 0.012224938875305624, 0.013039934800325998, 0.010594947025264874, 0.010594947025264874, 0.010594947025264874, 0.009779951100244499, 0.009779951100244499, 0.008964955175224124, 0.026079869600651995, 0.013039934800325998, 0.013854930725346373, 0.012224938875305624, 0.008149959250203748, 0.008149959250203748, 0.008964955175224124, 0.009779951100244499, 0.006519967400162999, 0.004074979625101874, 0.0032599837000814994, 0.0032599837000814994, 0.0032599837000814994, 0.0032599837000814994, 0.0016299918500407497, 0.0016299918500407497, 0.0016299918500407497, 0.0016299918500407497, 0.0016299918500407497, 0.0016299918500407497, 0.0016299918500407497, 0.0016299918500407497, 0.0016299918500407497, 0.0016299918500407497, 0.0016299918500407497, 0.0016299918500407497, 0.0016299918500407497, 0.0016299918500407497, 0.0016299918500407497, 0.0024449877750611247, 0.0024449877750611247, 0.004074979625101874, 0.004074979625101874, 0.004074979625101874, 0.004074979625101874, 0.8728606356968215, 0.004074979625101874, 0.004074979625101874, 0.004074979625101874, 0.004074979625101874, 0.004074979625101874, 0.004074979625101874, 0.004889975550122249, 0.004074979625101874, 0.004074979625101874, 0.0057049714751426246, 0.0057049714751426246, 0.006519967400162999, 0.006519967400162999, 0.006519967400162999, 0.007334963325183374, 0.007334963325183374, 0.008964955175224124, 0.008964955175224124, 0.008964955175224124, 0.008964955175224124, 0.008964955175224124, 0.009779951100244499, 0.009779951100244499, 0.009779951100244499, 0.009779951100244499, 0.010594947025264874, 0.010594947025264874, 0.010594947025264874, 0.012224938875305624, 0.022819885900570498, 0.04645476772616137, 0.09616951915240424, 0.2632436837815811], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DASH_Dad3.gap.json b/pfam_gap_rates/DASH_Dad3.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..25d3a1ec419afb19dc803cc17c96ba67e6e382c4
--- /dev/null
+++ b/pfam_gap_rates/DASH_Dad3.gap.json
@@ -0,0 +1 @@
+{"family": "DASH_Dad3", "n_seqs": 106, "length": 88, "gap_rates": [0.19811320754716982, 0.1320754716981132, 0.05660377358490566, 0.02830188679245283, 0.02830188679245283, 0.02830188679245283, 0.02830188679245283, 0.018867924528301886, 0.018867924528301886, 0.018867924528301886, 0.018867924528301886, 0.018867924528301886, 0.018867924528301886, 0.018867924528301886, 0.018867924528301886, 0.018867924528301886, 0.018867924528301886, 0.018867924528301886, 0.018867924528301886, 0.009433962264150943, 0.0, 0.009433962264150943, 0.009433962264150943, 0.018867924528301886, 0.009433962264150943, 0.009433962264150943, 0.018867924528301886, 0.009433962264150943, 0.009433962264150943, 0.0, 0.0, 0.0, 0.8679245283018868, 0.8773584905660378, 0.8962264150943396, 0.8962264150943396, 0.9056603773584906, 0.9150943396226415, 0.9339622641509434, 0.9433962264150944, 0.9433962264150944, 0.9245283018867925, 0.9056603773584906, 0.8962264150943396, 0.8962264150943396, 0.8867924528301887, 0.8679245283018868, 0.8679245283018868, 0.07547169811320754, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.009433962264150943, 0.03773584905660377, 0.03773584905660377, 0.03773584905660377, 0.03773584905660377, 0.03773584905660377, 0.03773584905660377, 0.04716981132075472, 0.04716981132075472, 0.05660377358490566, 0.0660377358490566, 0.0660377358490566, 0.10377358490566038, 0.14150943396226415, 0.18867924528301888, 0.2641509433962264, 0.41509433962264153, 0.8679245283018868], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DDE_Tnp_1.gap.json b/pfam_gap_rates/DDE_Tnp_1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..8c87b7865bfa432244750de9fbf62a392dbad38e
--- /dev/null
+++ b/pfam_gap_rates/DDE_Tnp_1.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DDE_Tnp_1_5.gap.json b/pfam_gap_rates/DDE_Tnp_1_5.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..037132a8ab24f2f2f58556020a0d97ee677d1914
--- /dev/null
+++ b/pfam_gap_rates/DDE_Tnp_1_5.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DEDD_Tnp_IS110.gap.json b/pfam_gap_rates/DEDD_Tnp_IS110.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..dffa210706876e2df9db1a79205ef0746a74d09e
--- /dev/null
+++ b/pfam_gap_rates/DEDD_Tnp_IS110.gap.json
@@ -0,0 +1 @@
+{"family": "DEDD_Tnp_IS110", "n_seqs": 2545, "length": 166, "gap_rates": [0.22318271119842828, 0.15834970530451867, 0.131237721021611, 0.1280943025540275, 0.1269155206286837, 0.12416502946954813, 0.1237721021611002, 0.12337917485265226, 0.12259332023575638, 0.12848722986247543, 0.12652259332023574, 0.1206286836935167, 0.11905697445972495, 0.11984282907662082, 0.11827111984282908, 0.14852652259332025, 0.20039292730844793, 0.9461689587426326, 0.14695481335952848, 0.15481335952848724, 0.1544204322200393, 0.13909626719056975, 0.16110019646365423, 0.14970530451866404, 0.14459724950884087, 0.9489194499017681, 0.12612966601178782, 0.7764243614931238, 0.11394891944990176, 0.10176817288801572, 0.09823182711198428, 0.09980353634577603, 0.10451866404715128, 0.10530451866404715, 0.21768172888015716, 0.21178781925343812, 0.1481335952848723, 0.15638506876227898, 0.143811394891945, 0.09548133595284872, 0.09390962671905698, 0.09351669941060904, 0.09351669941060904, 0.8353634577603143, 0.9237721021611002, 0.8601178781925344, 0.7807465618860511, 0.5544204322200393, 0.25579567779960705, 0.21728880157170924, 0.1595284872298625, 0.07779960707269155, 0.937524557956778, 0.9241650294695481, 0.07072691552062868, 0.06994106090373281, 0.06719056974459725, 0.06286836935166994, 0.060117878192534384, 0.058153241650294694, 0.04950884086444008, 0.049901768172888016, 0.058153241650294694, 0.07544204322200393, 0.05108055009823183, 0.05225933202357564, 0.09508840864440078, 0.057367387033398824, 0.08644400785854617, 0.07897838899803536, 0.11944990176817288, 0.055402750491159135, 0.05618860510805501, 0.06679764243614932, 0.08369351669941061, 0.052652259332023575, 0.0487229862475442, 0.04950884086444008, 0.04086444007858546, 0.0412573673870334, 0.04086444007858546, 0.04086444007858546, 0.03889980353634578, 0.03732809430255403, 0.03575638506876228, 0.034970530451866405, 0.03575638506876228, 0.040471512770137524, 0.062475442043222, 0.05972495088408644, 0.0550098231827112, 0.05304518664047151, 0.05147347740667976, 0.25736738703339884, 0.3791748526522593, 0.412180746561886, 0.36385068762278977, 0.8884086444007858, 0.25147347740667975, 0.08762278978388999, 0.04400785854616896, 0.037721021611001965, 0.03654223968565815, 0.030648330058939095, 0.029469548133595286, 0.029469548133595286, 0.02986247544204322, 0.03025540275049116, 0.031041257367387033, 0.03143418467583497, 0.03261296660117878, 0.03182711198428291, 0.03261296660117878, 0.03379174852652259, 0.03418467583497053, 0.034970530451866405, 0.03614931237721022, 0.787033398821218, 0.7033398821218074, 0.05029469548133595, 0.04793713163064833, 0.049901768172888016, 0.05029469548133595, 0.05225933202357564, 0.052652259332023575, 0.054616895874263265, 0.09705304518664047, 0.08880157170923379, 0.06326129666011787, 0.06326129666011787, 0.058153241650294694, 0.062475442043222, 0.06326129666011787, 0.062475442043222, 0.06129666011787819, 0.06129666011787819, 0.06168958742632613, 0.06326129666011787, 0.06286836935166994, 0.06404715127701376, 0.06444007858546169, 0.06601178781925343, 0.06719056974459725, 0.06797642436149312, 0.07151277013752456, 0.07269155206286837, 0.07426326129666012, 0.07740667976424362, 0.07897838899803536, 0.08133595284872298, 0.08369351669941061, 0.09194499017681729, 0.09469548133595285, 0.09587426326129667, 0.10294695481335953, 0.10609037328094302, 0.1206286836935167, 0.14145383104125736, 0.17603143418467584, 0.23693516699410608, 0.287229862475442, 0.35402750491159135, 0.45579567779960706, 0.6133595284872299, 0.7076620825147347, 0.7170923379174853], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DER1.gap.json b/pfam_gap_rates/DER1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..0d1d0b19b31f04ab7fb2ac1445594d3b6e7c29a6
--- /dev/null
+++ b/pfam_gap_rates/DER1.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DFRP_C.gap.json b/pfam_gap_rates/DFRP_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..9fa8cf80441540fb810664a8495be62b65362e5d
--- /dev/null
+++ b/pfam_gap_rates/DFRP_C.gap.json
@@ -0,0 +1 @@
+{"family": "DFRP_C", "n_seqs": 468, "length": 111, "gap_rates": [0.4658119658119658, 0.4166666666666667, 0.37606837606837606, 0.3162393162393162, 0.27350427350427353, 0.25427350427350426, 0.24358974358974358, 0.22008547008547008, 0.16452991452991453, 0.1517094017094017, 0.1388888888888889, 0.12179487179487179, 0.1111111111111111, 0.1047008547008547, 0.09829059829059829, 0.9401709401709402, 0.9487179487179487, 0.9401709401709402, 0.938034188034188, 0.07905982905982906, 0.07905982905982906, 0.7670940170940171, 0.2094017094017094, 0.06837606837606838, 0.00641025641025641, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.002136752136752137, 0.002136752136752137, 0.004273504273504274, 0.004273504273504274, 0.004273504273504274, 0.004273504273504274, 0.004273504273504274, 0.004273504273504274, 0.004273504273504274, 0.16452991452991453, 0.023504273504273504, 0.019230769230769232, 0.010683760683760684, 0.014957264957264958, 0.017094017094017096, 0.029914529914529916, 0.22435897435897437, 0.4081196581196581, 0.49572649572649574, 0.5213675213675214, 0.8632478632478633, 0.8974358974358975, 0.9316239316239316, 0.9358974358974359, 0.9337606837606838, 0.9252136752136753, 0.8931623931623932, 0.5747863247863247, 0.5106837606837606, 0.4252136752136752, 0.3076923076923077, 0.18803418803418803, 0.17094017094017094, 0.008547008547008548, 0.010683760683760684, 0.010683760683760684, 0.010683760683760684, 0.008547008547008548, 0.008547008547008548, 0.9465811965811965, 0.017094017094017096, 0.18803418803418803, 0.03632478632478633, 0.029914529914529916, 0.027777777777777776, 0.023504273504273504, 0.023504273504273504, 0.03205128205128205, 0.04700854700854701, 0.057692307692307696, 0.08547008547008547, 0.09829059829059829, 0.1047008547008547, 0.10897435897435898, 0.11752136752136752, 0.14102564102564102, 0.19017094017094016, 0.47649572649572647, 0.45085470085470086, 0.452991452991453, 0.9444444444444444, 0.9081196581196581, 0.4658119658119658, 0.4807692307692308, 0.4893162393162393, 0.5256410256410257, 0.5726495726495726, 0.6196581196581197, 0.6623931623931624, 0.7136752136752137, 0.9209401709401709], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DGF-1_4.gap.json b/pfam_gap_rates/DGF-1_4.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..bfa282d2a7d9c47a680c3178d1a79123e836617b
--- /dev/null
+++ b/pfam_gap_rates/DGF-1_4.gap.json
@@ -0,0 +1 @@
+{"family": "DGF-1_4", "n_seqs": 221, "length": 83, "gap_rates": [0.013574660633484163, 0.013574660633484163, 0.013574660633484163, 0.013574660633484163, 0.013574660633484163, 0.013574660633484163, 0.013574660633484163, 0.013574660633484163, 0.013574660633484163, 0.02262443438914027, 0.01809954751131222, 0.027149321266968326, 0.013574660633484163, 0.013574660633484163, 0.013574660633484163, 0.01809954751131222, 0.01809954751131222, 0.04524886877828054, 0.04524886877828054, 0.04072398190045249, 0.04524886877828054, 0.027149321266968326, 0.03167420814479638, 0.04072398190045249, 0.03167420814479638, 0.03167420814479638, 0.027149321266968326, 0.03619909502262444, 0.04072398190045249, 0.04072398190045249, 0.6832579185520362, 0.665158371040724, 0.5701357466063348, 0.9230769230769231, 0.9276018099547512, 0.6470588235294118, 0.04524886877828054, 0.03167420814479638, 0.03167420814479638, 0.9457013574660633, 0.9366515837104072, 0.027149321266968326, 0.027149321266968326, 0.027149321266968326, 0.03167420814479638, 0.03167420814479638, 0.027149321266968326, 0.02262443438914027, 0.12217194570135746, 0.12217194570135746, 0.12217194570135746, 0.12217194570135746, 0.12217194570135746, 0.02262443438914027, 0.02262443438914027, 0.02262443438914027, 0.04072398190045249, 0.04072398190045249, 0.04072398190045249, 0.03619909502262444, 0.04072398190045249, 0.04072398190045249, 0.03167420814479638, 0.03619909502262444, 0.027149321266968326, 0.027149321266968326, 0.02262443438914027, 0.027149321266968326, 0.03167420814479638, 0.027149321266968326, 0.027149321266968326, 0.027149321266968326, 0.027149321266968326, 0.027149321266968326, 0.027149321266968326, 0.027149321266968326, 0.027149321266968326, 0.027149321266968326, 0.05429864253393665, 0.07692307692307693, 0.07692307692307693, 0.07692307692307693, 0.08597285067873303], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DHquinase_I.gap.json b/pfam_gap_rates/DHquinase_I.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..5e6c4ad8a1ca7b038751e7226513680923ede236
--- /dev/null
+++ b/pfam_gap_rates/DHquinase_I.gap.json
@@ -0,0 +1 @@
+{"family": "DHquinase_I", "n_seqs": 863, "length": 249, "gap_rates": [0.5585168018539977, 0.354577056778679, 0.3128621089223638, 0.2931633835457706, 0.28157589803012745, 0.26998841251448435, 0.2653534183082271, 0.2653534183082271, 0.25840092699884126, 0.24797219003476245, 0.9490150637311703, 0.22711471610660486, 0.20973348783314022, 0.18076477404403243, 0.1645422943221321, 0.14831981460023175, 0.12977983777520277, 0.12166859791425261, 0.1205098493626883, 0.1332560834298957, 0.22827346465816917, 0.2190034762456547, 0.5550405561993047, 0.16801853997682503, 0.07647740440324449, 0.06952491309385864, 0.0660486674391657, 0.0660486674391657, 0.06488991888760139, 0.06373117033603708, 0.06257242178447277, 0.06141367323290846, 0.06141367323290846, 0.06257242178447277, 0.06141367323290846, 0.0996523754345307, 0.10196987253765932, 0.09733487833140209, 0.320973348783314, 0.2190034762456547, 0.7439165701042874, 0.7682502896871379, 0.7891077636152954, 0.8516801853997682, 0.9269988412514485, 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\ No newline at end of file
diff --git a/pfam_gap_rates/DJ-1_PfpI.gap.json b/pfam_gap_rates/DJ-1_PfpI.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..13965ee819e806230f3eb6389443e1db2eb0b6e9
--- /dev/null
+++ b/pfam_gap_rates/DJ-1_PfpI.gap.json
@@ -0,0 +1 @@
+{"family": "DJ-1_PfpI", "n_seqs": 5000, "length": 245, "gap_rates": [0.7066, 0.4736, 0.3768, 0.3576, 0.3272, 0.3208, 0.3134, 0.3096, 0.3018, 0.2936, 0.2874, 0.284, 0.2748, 0.2224, 0.1762, 0.1734, 0.1704, 0.1682, 0.167, 0.1656, 0.1638, 0.1622, 0.16, 0.1582, 0.9474, 0.9112, 0.1514, 0.7852, 0.819, 0.8638, 0.9392, 0.8878, 0.833, 0.803, 0.7462, 0.1422, 0.1356, 0.1146, 0.1062, 0.1008, 0.0954, 0.091, 0.0886, 0.088, 0.0864, 0.0822, 0.7358, 0.7694, 0.7878, 0.8008, 0.8122, 0.8366, 0.8536, 0.8744, 0.9364, 0.8674, 0.8448, 0.817, 0.8046, 0.7942, 0.778, 0.7532, 0.5792, 0.1102, 0.1008, 0.0974, 0.0966, 0.0976, 0.0968, 0.0958, 0.0922, 0.0858, 0.8906, 0.9192, 0.912, 0.8374, 0.0806, 0.0786, 0.075, 0.074, 0.0754, 0.0726, 0.0694, 0.0856, 0.0746, 0.0556, 0.9012, 0.9194, 0.927, 0.9382, 0.944, 0.9406, 0.9322, 0.9228, 0.9142, 0.8988, 0.157, 0.2732, 0.1752, 0.067, 0.0678, 0.9372, 0.1018, 0.068, 0.03, 0.0292, 0.029, 0.0282, 0.0286, 0.0308, 0.035, 0.0388, 0.0426, 0.0384, 0.4248, 0.093, 0.0482, 0.034, 0.0352, 0.0344, 0.0808, 0.109, 0.0814, 0.0206, 0.0166, 0.0148, 0.0146, 0.014, 0.0134, 0.0156, 0.0168, 0.0164, 0.018, 0.0148, 0.014, 0.0128, 0.0112, 0.0126, 0.0102, 0.0108, 0.011, 0.013, 0.0132, 0.013, 0.013, 0.017, 0.9416, 0.016, 0.0182, 0.0188, 0.022, 0.0254, 0.0296, 0.0366, 0.9452, 0.9464, 0.9476, 0.9458, 0.945, 0.0402, 0.0488, 0.0526, 0.0526, 0.0564, 0.0572, 0.0576, 0.059, 0.0594, 0.061, 0.0634, 0.0648, 0.086, 0.0794, 0.9376, 0.0802, 0.08, 0.077, 0.694, 0.8854, 0.912, 0.9194, 0.9274, 0.9372, 0.9438, 0.9426, 0.9302, 0.9252, 0.9162, 0.901, 0.8452, 0.6502, 0.2366, 0.2228, 0.1474, 0.131, 0.1258, 0.125, 0.1298, 0.1304, 0.1304, 0.0928, 0.675, 0.8224, 0.8948, 0.9266, 0.9316, 0.9336, 0.9454, 0.9462, 0.9462, 0.9354, 0.9322, 0.9286, 0.9232, 0.8564, 0.7478, 0.5734, 0.0962, 0.0942, 0.094, 0.0944, 0.0958, 0.0974, 0.0986, 0.936, 0.1008, 0.1012, 0.1012, 0.1038, 0.109, 0.1092, 0.146, 0.1158, 0.1194, 0.123, 0.13, 0.1336, 0.1392, 0.1434, 0.1536, 0.1662, 0.1798, 0.2148, 0.4004, 0.922], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DMAP1.gap.json b/pfam_gap_rates/DMAP1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..334f2a1d2a83a29e6142d67cc12381030f6f01fa
--- /dev/null
+++ b/pfam_gap_rates/DMAP1.gap.json
@@ -0,0 +1 @@
+{"family": "DMAP1", "n_seqs": 147, "length": 209, "gap_rates": [0.41496598639455784, 0.3945578231292517, 0.3741496598639456, 0.3741496598639456, 0.3741496598639456, 0.3673469387755102, 0.3673469387755102, 0.3673469387755102, 0.3673469387755102, 0.3673469387755102, 0.35374149659863946, 0.35374149659863946, 0.35374149659863946, 0.35374149659863946, 0.35374149659863946, 0.35374149659863946, 0.35374149659863946, 0.35374149659863946, 0.35374149659863946, 0.3469387755102041, 0.3469387755102041, 0.3469387755102041, 0.35374149659863946, 0.3469387755102041, 0.3401360544217687, 0.3401360544217687, 0.3401360544217687, 0.3401360544217687, 0.3401360544217687, 0.3401360544217687, 0.3333333333333333, 0.3333333333333333, 0.32653061224489793, 0.3129251700680272, 0.3129251700680272, 0.29931972789115646, 0.3197278911564626, 0.29931972789115646, 0.29931972789115646, 0.7006802721088435, 0.7142857142857143, 0.7551020408163265, 0.7891156462585034, 0.8095238095238095, 0.8639455782312925, 0.8639455782312925, 0.8707482993197279, 0.8707482993197279, 0.8707482993197279, 0.8979591836734694, 0.9251700680272109, 0.9319727891156463, 0.9455782312925171, 0.9455782312925171, 0.9319727891156463, 0.9047619047619048, 0.8843537414965986, 0.8707482993197279, 0.8707482993197279, 0.8639455782312925, 0.8639455782312925, 0.8299319727891157, 0.7959183673469388, 0.7619047619047619, 0.7142857142857143, 0.7074829931972789, 0.673469387755102, 0.3197278911564626, 0.42857142857142855, 0.41496598639455784, 0.40816326530612246, 0.3945578231292517, 0.3741496598639456, 0.3129251700680272, 0.8775510204081632, 0.9047619047619048, 0.9455782312925171, 0.9047619047619048, 0.8979591836734694, 0.8639455782312925, 0.3333333333333333, 0.3129251700680272, 0.30612244897959184, 0.3129251700680272, 0.3197278911564626, 0.3197278911564626, 0.30612244897959184, 0.29931972789115646, 0.3197278911564626, 0.30612244897959184, 0.3197278911564626, 0.29931972789115646, 0.29931972789115646, 0.2925170068027211, 0.3129251700680272, 0.3129251700680272, 0.3333333333333333, 0.3333333333333333, 0.4965986394557823, 0.47619047619047616, 0.3877551020408163, 0.7006802721088435, 0.7755102040816326, 0.8571428571428571, 0.9319727891156463, 0.8843537414965986, 0.8299319727891157, 0.7687074829931972, 0.6598639455782312, 0.24489795918367346, 0.23809523809523808, 0.23809523809523808, 0.23809523809523808, 0.24489795918367346, 0.25170068027210885, 0.23129251700680273, 0.23129251700680273, 0.2585034013605442, 0.19727891156462585, 0.19047619047619047, 0.17687074829931973, 0.16326530612244897, 0.16326530612244897, 0.16326530612244897, 0.16326530612244897, 0.16326530612244897, 0.16326530612244897, 0.16326530612244897, 0.17006802721088435, 0.17687074829931973, 0.9319727891156463, 0.1836734693877551, 0.1836734693877551, 0.1564625850340136, 0.10204081632653061, 0.08843537414965986, 0.07482993197278912, 0.08163265306122448, 0.08163265306122448, 0.08843537414965986, 0.08163265306122448, 0.10884353741496598, 0.1360544217687075, 0.1360544217687075, 0.08163265306122448, 0.10884353741496598, 0.07482993197278912, 0.07482993197278912, 0.07482993197278912, 0.07482993197278912, 0.07482993197278912, 0.07482993197278912, 0.07482993197278912, 0.06802721088435375, 0.09523809523809523, 0.09523809523809523, 0.09523809523809523, 0.09523809523809523, 0.7755102040816326, 0.09523809523809523, 0.09523809523809523, 0.08843537414965986, 0.08843537414965986, 0.08843537414965986, 0.08843537414965986, 0.08843537414965986, 0.08843537414965986, 0.08843537414965986, 0.08843537414965986, 0.08843537414965986, 0.08843537414965986, 0.08843537414965986, 0.08163265306122448, 0.08163265306122448, 0.08843537414965986, 0.08843537414965986, 0.08843537414965986, 0.08843537414965986, 0.08843537414965986, 0.08843537414965986, 0.08843537414965986, 0.08843537414965986, 0.08843537414965986, 0.08843537414965986, 0.09523809523809523, 0.09523809523809523, 0.10884353741496598, 0.11564625850340136, 0.11564625850340136, 0.11564625850340136, 0.11564625850340136, 0.12244897959183673, 0.12244897959183673, 0.1292517006802721, 0.16326530612244897, 0.1836734693877551, 0.19047619047619047, 0.272108843537415, 0.30612244897959184, 0.3741496598639456, 0.41496598639455784, 0.46938775510204084, 0.48299319727891155, 0.5034013605442177, 0.6326530612244898, 0.5918367346938775, 0.7414965986394558, 0.8027210884353742, 0.8707482993197279], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DNA_RNApol_7kD.gap.json b/pfam_gap_rates/DNA_RNApol_7kD.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a158b34367deb85475ee09a2a0f0930f2f20566c
--- /dev/null
+++ b/pfam_gap_rates/DNA_RNApol_7kD.gap.json
@@ -0,0 +1 @@
+{"family": "DNA_RNApol_7kD", "n_seqs": 303, "length": 33, "gap_rates": [0.07260726072607261, 0.0594059405940594, 0.056105610561056105, 0.04950495049504951, 0.019801980198019802, 0.013201320132013201, 0.009900990099009901, 0.009900990099009901, 0.006600660066006601, 0.006600660066006601, 0.006600660066006601, 0.9306930693069307, 0.006600660066006601, 0.006600660066006601, 0.0033003300330033004, 0.0, 0.026402640264026403, 0.0231023102310231, 0.0, 0.0, 0.0, 0.0, 0.009900990099009901, 0.0, 0.0033003300330033004, 0.0033003300330033004, 0.0033003300330033004, 0.0033003300330033004, 0.0033003300330033004, 0.0033003300330033004, 0.006600660066006601, 0.0165016501650165, 0.0297029702970297], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DNA_ligase_ZBD.gap.json b/pfam_gap_rates/DNA_ligase_ZBD.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c9cdb1fc4194498e4c04696536cbd465e4a4ab21
--- /dev/null
+++ b/pfam_gap_rates/DNA_ligase_ZBD.gap.json
@@ -0,0 +1 @@
+{"family": "DNA_ligase_ZBD", "n_seqs": 1628, "length": 29, "gap_rates": [0.2794840294840295, 0.0018427518427518428, 0.0012285012285012285, 0.0012285012285012285, 0.0006142506142506142, 0.0, 0.0, 0.0, 0.0, 0.0012285012285012285, 0.855036855036855, 0.0085995085995086, 0.010442260442260442, 0.004914004914004914, 0.007985257985257985, 0.002457002457002457, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.49017199017199015, 0.0006142506142506142, 0.0006142506142506142, 0.0006142506142506142, 0.05528255528255528, 0.19963144963144963], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DNA_photolyase.gap.json b/pfam_gap_rates/DNA_photolyase.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ddeaf62747c1d625da02cbfafdd28fa0874a81de
--- /dev/null
+++ b/pfam_gap_rates/DNA_photolyase.gap.json
@@ -0,0 +1 @@
+{"family": "DNA_photolyase", "n_seqs": 2014, "length": 190, "gap_rates": [0.47368421052631576, 0.09086395233366434, 0.06554121151936444, 0.0605759682224429, 0.05362462760675273, 0.05263157894736842, 0.0506454816285998, 0.04965243296921549, 0.04865938430983118, 0.04716981132075472, 0.04568023833167825, 0.0451837140019861, 0.044687189672293945, 0.044687189672293945, 0.044687189672293945, 0.044190665342601784, 0.04319761668321748, 0.04220456802383317, 0.04369414101290963, 0.044190665342601784, 0.8247269116186693, 0.8465739821251241, 0.8326713008937437, 0.8058589870903674, 0.04568023833167825, 0.06554121151936444, 0.05759682224428997, 0.15441906653426019, 0.08192651439920556, 0.04816285998013903, 0.9458788480635552, 0.038728897715988087, 0.036742800397219465, 0.036742800397219465, 0.036742800397219465, 0.03574975173783516, 0.03574975173783516, 0.03574975173783516, 0.035253227408143, 0.03426017874875869, 0.03426017874875869, 0.5868917576961271, 0.9106256206554121, 0.5114200595829196, 0.19563058589870905, 0.23634558093346575, 0.20456802383316783, 0.24329692154915591, 0.20456802383316783, 0.8093346573982125, 0.8450844091360477, 0.9155908639523337, 0.9458788480635552, 0.9473684210526315, 0.9354518371400199, 0.8560079443892751, 0.8316782522343595, 0.7517378351539226, 0.4667328699106256, 0.37487586891757696, 0.03475670307845084, 0.029791459781529295, 0.028798411122144985, 0.027805362462760674, 0.027805362462760674, 0.02432969215491559, 0.02432969215491559, 0.022343594836146972, 0.021847070506454815, 0.02035749751737835, 0.020854021847070508, 0.02135054617676266, 0.02135054617676266, 0.02135054617676266, 0.021847070506454815, 0.020854021847070508, 0.022343594836146972, 0.022343594836146972, 0.02830188679245283, 0.07149950347567031, 0.0804369414101291, 0.07845084409136048, 0.035253227408143, 0.9473684210526315, 0.025819265143992055, 0.02631578947368421, 0.02631578947368421, 0.02432969215491559, 0.02432969215491559, 0.025819265143992055, 0.02631578947368421, 0.030784508440913606, 0.030784508440913606, 0.8733862959285005, 0.8833167825223436, 0.8808341608738828, 0.8351539225422046, 0.03227408142999007, 0.031777557100297914, 0.02929493545183714, 0.03475670307845084, 0.03277060575968222, 0.03326713008937438, 0.03723932472691162, 0.03426017874875869, 0.0407149950347567, 0.03574975173783516, 0.0605759682224429, 0.057100297914597815, 0.03128103277060576, 0.030784508440913606, 0.030784508440913606, 0.03128103277060576, 0.029791459781529295, 0.029791459781529295, 0.03028798411122145, 0.03028798411122145, 0.03227408142999007, 0.03326713008937438, 0.03426017874875869, 0.03426017874875869, 0.03475670307845084, 0.03723932472691162, 0.035253227408143, 0.03574975173783516, 0.03723932472691162, 0.038232373386295926, 0.03773584905660377, 0.0407149950347567, 0.0407149950347567, 0.04369414101290963, 0.044190665342601784, 0.04319761668321748, 0.04568023833167825, 0.05958291956305859, 0.06901688182720954, 0.16683217477656406, 0.2333664349553128, 0.1484607745779543, 0.07348560079443893, 0.06554121151936444, 0.05660377358490566, 0.0605759682224429, 0.06305858987090368, 0.06752730883813307, 0.07447864945382324, 0.08341608738828203, 0.09086395233366434, 0.10377358490566038, 0.10476663356504469, 0.10724925521350546, 0.11420059582919563, 0.11767626613704071, 0.11916583912611718, 0.1211519364448858, 0.12462760675273088, 0.8957298907646475, 0.14746772591857002, 0.13505461767626614, 0.13704071499503476, 0.1400198609731877, 0.1365441906653426, 0.9374379344587885, 0.13604766633565044, 0.13704071499503476, 0.13704071499503476, 0.13902681231380337, 0.13952333664349553, 0.1400198609731877, 0.14150943396226415, 0.14349553128103276, 0.14399205561072492, 0.14548162859980138, 0.15044687189672293, 0.17974180734856007, 0.18023833167825223, 0.19662363455809334, 0.21648460774577954, 0.3157894736842105, 0.346077457795432, 0.3897715988083416, 0.839622641509434, 0.9414101290963257, 0.7452830188679245, 0.5844091360476663, 0.6742800397219464, 0.7125124131082423, 0.7432969215491559, 0.814299900695134, 0.9190665342601787], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DNA_pol3_alpha.gap.json b/pfam_gap_rates/DNA_pol3_alpha.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..2d3dbdf291e22a75505925da7092e4d9fdcb0d36
--- /dev/null
+++ b/pfam_gap_rates/DNA_pol3_alpha.gap.json
@@ -0,0 +1 @@
+{"family": "DNA_pol3_alpha", "n_seqs": 3665, "length": 523, "gap_rates": [0.7869031377899045, 0.2311050477489768, 0.13124147339699863, 0.1145975443383356, 0.10804911323328786, 0.10286493860845838, 0.0965893587994543, 0.0941336971350614, 0.09167803547066848, 0.08922237380627558, 0.08867667121418826, 0.08813096862210096, 0.09195088676671215, 0.08758526603001364, 0.08976807639836289, 0.7399727148703956, 0.7839017735334243, 0.8439290586630287, 0.8824010914051842, 0.9410641200545703, 0.8886766712141883, 0.8701227830832197, 0.8237380627557981, 0.7497953615279672, 0.7208731241473397, 0.08867667121418826, 0.10995907230559346, 0.17653478854024557, 0.1427012278308322, 0.07448840381991814, 0.06821282401091405, 0.06630286493860846, 0.06630286493860846, 0.06548431105047749, 0.06548431105047749, 0.06548431105047749, 0.06466575716234652, 0.06466575716234652, 0.06466575716234652, 0.06466575716234652, 0.06466575716234652, 0.06466575716234652, 0.06466575716234652, 0.06412005457025921, 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\ No newline at end of file
diff --git a/pfam_gap_rates/DNA_pol3_beta.gap.json b/pfam_gap_rates/DNA_pol3_beta.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..fb15c39a5be4d6ae5a12d8be4f6b96d87b86ed57
--- /dev/null
+++ b/pfam_gap_rates/DNA_pol3_beta.gap.json
@@ -0,0 +1 @@
+{"family": "DNA_pol3_beta", "n_seqs": 2341, "length": 131, "gap_rates": [0.13156770610850063, 0.09098675779581375, 0.07774455360956856, 0.07005553182400684, 0.054677488252883384, 0.03374626228107646, 0.025630072618539085, 0.023067065356685176, 0.021358393848782572, 0.02050405809483127, 0.018795386586928663, 0.018795386586928663, 0.018795386586928663, 0.01836821870995301, 0.01836821870995301, 0.01794105083297736, 0.01794105083297736, 0.01751388295600171, 0.01794105083297736, 0.016659547202050404, 0.015805211448099103, 0.016232379325074753, 0.01708671507902606, 0.015805211448099103, 0.015378043571123452, 0.016232379325074753, 0.015378043571123452, 0.015378043571123452, 0.0149508756941478, 0.011533532678342588, 0.010252029047415635, 0.009397693293464331, 0.009824861170439982, 0.00854335753951303, 0.00854335753951303, 0.007689021785561726, 0.007689021785561726, 0.011533532678342588, 0.01196070055531824, 0.9137120888509184, 0.014523707817172148, 0.006834686031610423, 0.006407518154634771, 0.00598035027765912, 0.004271678769756515, 0.004271678769756515, 0.0034173430158052115, 0.0034173430158052115, 0.0034173430158052115, 0.00299017513882956, 0.00299017513882956, 0.00299017513882956, 0.00299017513882956, 0.00299017513882956, 0.0034173430158052115, 0.0034173430158052115, 0.00299017513882956, 0.0034173430158052115, 0.0034173430158052115, 0.0034173430158052115, 0.0034173430158052115, 0.003844510892780863, 0.003844510892780863, 0.8594617684750107, 0.8876548483554036, 0.9060230670653567, 0.9461768475010679, 0.8979068774028193, 0.8709953011533532, 0.8389577103801794, 0.6757795813754806, 0.003844510892780863, 0.0034173430158052115, 0.004698846646732166, 0.004271678769756515, 0.004271678769756515, 0.0034173430158052115, 0.0034173430158052115, 0.0034173430158052115, 0.0034173430158052115, 0.0034173430158052115, 0.004271678769756515, 0.004698846646732166, 0.00299017513882956, 0.00299017513882956, 0.003844510892780863, 0.003844510892780863, 0.004271678769756515, 0.005553182400683468, 0.004271678769756515, 0.0051260145237078175, 0.0051260145237078175, 0.7231952157197779, 0.032037590773173856, 0.00897052541648868, 0.0051260145237078175, 0.005553182400683468, 0.005553182400683468, 0.006407518154634771, 0.008116189662537377, 0.007689021785561726, 0.00897052541648868, 0.9038872276804785, 0.7936779154207604, 0.00854335753951303, 0.010679196924391286, 0.011533532678342588, 0.011533532678342588, 0.012387868432293891, 0.01751388295600171, 0.6300726185390859, 0.01751388295600171, 0.016232379325074753, 0.016659547202050404, 0.016659547202050404, 0.01836821870995301, 0.02050405809483127, 0.01836821870995301, 0.01751388295600171, 0.019649722340879965, 0.02050405809483127, 0.021358393848782572, 0.022212729602733874, 0.024775736864587783, 0.025630072618539085, 0.027338744126441692, 0.028193079880392994, 0.031610422896198205, 0.05040580948312687, 0.12985903460059803, 0.4775736864587783], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DNA_primase_lrg.gap.json b/pfam_gap_rates/DNA_primase_lrg.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e9801133b2dfb6713a6ffc6b36f03c91a219f2ef
--- /dev/null
+++ b/pfam_gap_rates/DNA_primase_lrg.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DOG1.gap.json b/pfam_gap_rates/DOG1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..612a3e50051a69cd6a81a5a9f00212da52bda492
--- /dev/null
+++ b/pfam_gap_rates/DOG1.gap.json
@@ -0,0 +1 @@
+{"family": "DOG1", "n_seqs": 493, "length": 82, "gap_rates": [0.6774847870182555, 0.2657200811359026, 0.17038539553752535, 0.1257606490872211, 0.11764705882352941, 0.11359026369168357, 0.10953346855983773, 0.10141987829614604, 0.09939148073022312, 0.09330628803245436, 0.9127789046653144, 0.10547667342799188, 0.07099391480730223, 0.8498985801217038, 0.9269776876267748, 0.8904665314401623, 0.8052738336713996, 0.060851926977687626, 0.05476673427991886, 0.04665314401622718, 0.04462474645030426, 0.036511156186612576, 0.02434077079107505, 0.02028397565922921, 0.02028397565922921, 0.02028397565922921, 0.02028397565922921, 0.02028397565922921, 0.02028397565922921, 0.018255578093306288, 0.012170385395537525, 0.012170385395537525, 0.012170385395537525, 0.012170385395537525, 0.010141987829614604, 0.010141987829614604, 0.010141987829614604, 0.010141987829614604, 0.008113590263691683, 0.008113590263691683, 0.008113590263691683, 0.02028397565922921, 0.02028397565922921, 0.02028397565922921, 0.010141987829614604, 0.008113590263691683, 0.008113590263691683, 0.008113590263691683, 0.006085192697768763, 0.006085192697768763, 0.008113590263691683, 0.008113590263691683, 0.006085192697768763, 0.006085192697768763, 0.006085192697768763, 0.004056795131845842, 0.006085192697768763, 0.004056795131845842, 0.004056795131845842, 0.002028397565922921, 0.004056795131845842, 0.004056795131845842, 0.008113590263691683, 0.012170385395537525, 0.012170385395537525, 0.014198782961460446, 0.014198782961460446, 0.014198782961460446, 0.014198782961460446, 0.016227180527383367, 0.016227180527383367, 0.02028397565922921, 0.02231237322515213, 0.02231237322515213, 0.02231237322515213, 0.02231237322515213, 0.02231237322515213, 0.02434077079107505, 0.036511156186612576, 0.06490872210953347, 0.17647058823529413, 0.8174442190669371], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DOMON.gap.json b/pfam_gap_rates/DOMON.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..1bc581d1cc8cf851be460652c1f56316fa633e79
--- /dev/null
+++ b/pfam_gap_rates/DOMON.gap.json
@@ -0,0 +1 @@
+{"family": "DOMON", "n_seqs": 939, "length": 151, "gap_rates": [0.946751863684771, 0.6166134185303515, 0.45260915867944623, 0.3450479233226837, 0.288604898828541, 0.26091586794462196, 0.24494142705005326, 0.23961661341853036, 0.22896698615548455, 0.21831735889243875, 0.2161874334398296, 0.20873269435569755, 0.5761448349307774, 0.5069222577209798, 0.17784877529286475, 0.1757188498402556, 0.19382321618743345, 0.15335463258785942, 0.14589989350372737, 0.14057507987220447, 0.13312034078807242, 0.1288604898828541, 0.12673056443024494, 0.41533546325878595, 0.43130990415335463, 0.14589989350372737, 0.22364217252396165, 0.3109691160809372, 0.8817891373801917, 0.09584664536741214, 0.08626198083067092, 0.08413205537806177, 0.08093716719914804, 0.08093716719914804, 0.08093716719914804, 0.08093716719914804, 0.07987220447284345, 0.08093716719914804, 0.08093716719914804, 0.8317358892438764, 0.9414270500532481, 0.8487752928647497, 0.8019169329073482, 0.10543130990415335, 0.19382321618743345, 0.14376996805111822, 0.03407880724174654, 0.026624068157614485, 0.025559105431309903, 0.024494142705005325, 0.023429179978700747, 0.024494142705005325, 0.024494142705005325, 0.025559105431309903, 0.025559105431309903, 0.025559105431309903, 0.027689030883919063, 0.039403620873269436, 0.670926517571885, 0.046858359957401494, 0.9275825346112886, 0.7731629392971247, 0.0308839190628328, 0.0308839190628328, 0.027689030883919063, 0.027689030883919063, 0.025559105431309903, 0.021299254526091587, 0.021299254526091587, 0.027689030883919063, 0.02875399361022364, 0.8178913738019169, 0.853035143769968, 0.8626198083067093, 0.9254526091586794, 0.9307774227902024, 0.9169329073482428, 0.858359957401491, 0.838125665601704, 0.7795527156549521, 0.6112886048988285, 0.039403620873269436, 0.03301384451544196, 0.03727369542066028, 0.03727369542066028, 0.0362087326943557, 0.22257720979765708, 0.039403620873269436, 0.04046858359957402, 0.04472843450479233, 0.04898828541001065, 0.17145899893503727, 0.14057507987220447, 0.7167199148029819, 0.9307774227902024, 0.9488817891373802, 0.8594249201277955, 0.6815761448349308, 0.5782747603833865, 0.4653887113951012, 0.058572949946751864, 0.05324813631522897, 0.05644302449414271, 0.05324813631522897, 0.054313099041533544, 0.058572949946751864, 0.06283280085197018, 0.9414270500532481, 0.0979765708200213, 0.09052183173588925, 0.08306709265175719, 0.07987220447284345, 0.0724174653887114, 0.07348242811501597, 0.07348242811501597, 0.07454739084132056, 0.07454739084132056, 0.07454739084132056, 0.07454739084132056, 0.07454739084132056, 0.07880724174653887, 0.08732694355697551, 0.08732694355697551, 0.08945686900958466, 0.09691160809371673, 0.10117145899893504, 0.9382321618743344, 0.9499467518636848, 0.9254526091586794, 0.2055378061767838, 0.19701810436634717, 0.14057507987220447, 0.6080937167199149, 0.13099041533546327, 0.1288604898828541, 0.1299254526091587, 0.13205537806176784, 0.1288604898828541, 0.48136315228966986, 0.1959531416400426, 0.1554845580404686, 0.1597444089456869, 0.1703940362087327, 0.17678381256656017, 0.1906283280085197, 0.19488817891373802, 0.21192758253461128, 0.24813631522896698, 0.288604898828541, 0.3759318423855165, 0.5079872204472844], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DS.gap.json b/pfam_gap_rates/DS.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..22726f1f5840c072bf5d7d499cd83503d3ddca5d
--- /dev/null
+++ b/pfam_gap_rates/DS.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DSL.gap.json b/pfam_gap_rates/DSL.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..9f21c05a29f15436023ef0b0187c7b7e98cb96f3
--- /dev/null
+++ b/pfam_gap_rates/DSL.gap.json
@@ -0,0 +1 @@
+{"family": "DSL", "n_seqs": 328, "length": 65, "gap_rates": [0.5274390243902439, 0.524390243902439, 0.5152439024390244, 0.5, 0.4878048780487805, 0.4695121951219512, 0.42378048780487804, 0.3932926829268293, 0.35060975609756095, 0.31402439024390244, 0.2682926829268293, 0.9451219512195121, 0.22560975609756098, 0.19207317073170732, 0.1798780487804878, 0.14939024390243902, 0.14329268292682926, 0.13719512195121952, 0.125, 0.11890243902439024, 0.08841463414634146, 0.054878048780487805, 0.054878048780487805, 0.054878048780487805, 0.04573170731707317, 0.03353658536585366, 0.03353658536585366, 0.036585365853658534, 0.03048780487804878, 0.024390243902439025, 0.024390243902439025, 0.018292682926829267, 0.021341463414634148, 0.006097560975609756, 0.003048780487804878, 0.003048780487804878, 0.0, 0.0, 0.039634146341463415, 0.125, 0.1524390243902439, 0.18292682926829268, 0.06707317073170732, 0.003048780487804878, 0.0, 0.0, 0.003048780487804878, 0.003048780487804878, 0.8292682926829268, 0.003048780487804878, 0.003048780487804878, 0.006097560975609756, 0.003048780487804878, 0.006097560975609756, 0.009146341463414634, 0.006097560975609756, 0.006097560975609756, 0.006097560975609756, 0.009146341463414634, 0.018292682926829267, 0.036585365853658534, 0.0701219512195122, 0.10365853658536585, 0.11890243902439024, 0.11890243902439024], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DSPc.gap.json b/pfam_gap_rates/DSPc.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..8f5276493818257a0756c17e83573a01d5927d9a
--- /dev/null
+++ b/pfam_gap_rates/DSPc.gap.json
@@ -0,0 +1 @@
+{"family": "DSPc", "n_seqs": 5000, "length": 152, "gap_rates": [0.6522, 0.6056, 0.588, 0.581, 0.5784, 0.5716, 0.5656, 0.5604, 0.5498, 0.54, 0.6004, 0.5064, 0.4798, 0.4574, 0.4378, 0.4112, 0.3964, 0.3806, 0.366, 0.355, 0.352, 0.3444, 0.3362, 0.3314, 0.3326, 0.3252, 0.324, 0.3666, 0.3374, 0.338, 0.3492, 0.4056, 0.5894, 0.8028, 0.8836, 0.9272, 0.9476, 0.9394, 0.9188, 0.8494, 0.7626, 0.5012, 0.4528, 0.4418, 0.3756, 0.282, 0.2536, 0.2412, 0.2328, 0.223, 0.2178, 0.214, 0.2104, 0.2078, 0.2066, 0.9236, 0.2078, 0.2098, 0.2024, 0.886, 0.9346, 0.9158, 0.8592, 0.2728, 0.1966, 0.1884, 0.1822, 0.176, 0.1726, 0.1642, 0.1568, 0.1516, 0.1462, 0.1386, 0.1284, 0.1124, 0.1062, 0.1046, 0.1036, 0.1002, 0.0972, 0.0978, 0.0976, 0.8946, 0.941, 0.8312, 0.0766, 0.07, 0.0576, 0.0496, 0.0362, 0.0296, 0.0204, 0.0196, 0.0198, 0.0196, 0.0208, 0.02, 0.017, 0.0176, 0.0168, 0.0168, 0.0168, 0.017, 0.0168, 0.018, 0.0196, 0.0196, 0.0202, 0.0206, 0.0258, 0.0216, 0.0242, 0.0392, 0.0532, 0.0434, 0.0442, 0.0472, 0.933, 0.051, 0.0528, 0.0556, 0.0564, 0.0582, 0.0612, 0.0656, 0.0684, 0.0732, 0.0806, 0.0868, 0.092, 0.0962, 0.9472, 0.8898, 0.1188, 0.1796, 0.1552, 0.1786, 0.194, 0.2106, 0.2884, 0.2444, 0.2446, 0.2586, 0.2776, 0.2896, 0.2972, 0.347, 0.3842, 0.4174, 0.4726, 0.646], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DSPn.gap.json b/pfam_gap_rates/DSPn.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..8f1af58c0bd9608239002754a42f70d901827e30
--- /dev/null
+++ b/pfam_gap_rates/DSPn.gap.json
@@ -0,0 +1 @@
+{"family": "DSPn", "n_seqs": 349, "length": 176, "gap_rates": [0.6275071633237822, 0.4899713467048711, 0.42406876790830944, 0.40114613180515757, 0.3667621776504298, 0.3638968481375358, 0.3638968481375358, 0.3638968481375358, 0.3638968481375358, 0.3638968481375358, 0.36103151862464183, 0.36103151862464183, 0.36103151862464183, 0.3524355300859599, 0.8882521489971347, 0.8510028653295129, 0.335243553008596, 0.9054441260744985, 0.3008595988538682, 0.2922636103151863, 0.28939828080229224, 0.2808022922636103, 0.27793696275071633, 0.20057306590257878, 0.839541547277937, 0.839541547277937, 0.839541547277937, 0.8452722063037249, 0.8510028653295129, 0.8595988538681948, 0.8653295128939829, 0.8825214899713467, 0.8882521489971347, 0.8882521489971347, 0.8882521489971347, 0.8882521489971347, 0.8911174785100286, 0.8997134670487106, 0.9255014326647565, 0.9455587392550143, 0.9140401146131805, 0.8911174785100286, 0.8882521489971347, 0.8882521489971347, 0.8882521489971347, 0.8882521489971347, 0.8853868194842407, 0.8767908309455588, 0.8624641833810889, 0.8567335243553008, 0.8452722063037249, 0.8424068767908309, 0.839541547277937, 0.839541547277937, 0.839541547277937, 0.1833810888252149, 0.17191977077363896, 0.16332378223495703, 0.14613180515759314, 0.1346704871060172, 0.1346704871060172, 0.12893982808022922, 0.12893982808022922, 0.12320916905444126, 0.12034383954154727, 0.11461318051575932, 0.10601719197707736, 0.10315186246418338, 0.09742120343839542, 0.09742120343839542, 0.09455587392550144, 0.09455587392550144, 0.08595988538681948, 0.08595988538681948, 0.08595988538681948, 0.08595988538681948, 0.08595988538681948, 0.08595988538681948, 0.08595988538681948, 0.08595988538681948, 0.07736389684813753, 0.07736389684813753, 0.07736389684813753, 0.07449856733524356, 0.07449856733524356, 0.07449856733524356, 0.07449856733524356, 0.07449856733524356, 0.07736389684813753, 0.07736389684813753, 0.07449856733524356, 0.06876790830945559, 0.0659025787965616, 0.06876790830945559, 0.07163323782234957, 0.08022922636103152, 0.14326647564469913, 0.17191977077363896, 0.15472779369627507, 0.1174785100286533, 0.07449856733524356, 0.06303724928366762, 0.05730659025787966, 0.05730659025787966, 0.054441260744985676, 0.054441260744985676, 0.05730659025787966, 0.05730659025787966, 0.054441260744985676, 0.05157593123209169, 0.054441260744985676, 0.054441260744985676, 0.05730659025787966, 0.054441260744985676, 0.05730659025787966, 0.05730659025787966, 0.05730659025787966, 0.05730659025787966, 0.05730659025787966, 0.05730659025787966, 0.054441260744985676, 0.054441260744985676, 0.054441260744985676, 0.054441260744985676, 0.04011461318051576, 0.034383954154727794, 0.03151862464183381, 0.034383954154727794, 0.034383954154727794, 0.034383954154727794, 0.034383954154727794, 0.034383954154727794, 0.04297994269340974, 0.04297994269340974, 0.03724928366762178, 0.03724928366762178, 0.03724928366762178, 0.04011461318051576, 0.04011461318051576, 0.04011461318051576, 0.04011461318051576, 0.04011461318051576, 0.08882521489971347, 0.6991404011461319, 0.2177650429799427, 0.1977077363896848, 0.04871060171919771, 0.9398280802292264, 0.05157593123209169, 0.05157593123209169, 0.054441260744985676, 0.05157593123209169, 0.05157593123209169, 0.05157593123209169, 0.054441260744985676, 0.054441260744985676, 0.05730659025787966, 0.054441260744985676, 0.05730659025787966, 0.06303724928366762, 0.06876790830945559, 0.054441260744985676, 0.06017191977077364, 0.05730659025787966, 0.05730659025787966, 0.05730659025787966, 0.05730659025787966, 0.06017191977077364, 0.06017191977077364, 0.06017191977077364, 0.06017191977077364, 0.06017191977077364, 0.06017191977077364, 0.06303724928366762, 0.07163323782234957, 0.15759312320916904], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF1015.gap.json b/pfam_gap_rates/DUF1015.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..5b19ad01b51275440e87d30966234d7632e648db
--- /dev/null
+++ b/pfam_gap_rates/DUF1015.gap.json
@@ -0,0 +1 @@
+{"family": "DUF1015", "n_seqs": 741, "length": 492, "gap_rates": [0.3333333333333333, 0.24156545209176788, 0.21727395411605938, 0.2145748987854251, 0.20512820512820512, 0.18758434547908232, 0.17813765182186234, 0.1632928475033738, 0.6261808367071525, 0.17139001349527666, 0.17543859649122806, 0.2699055330634278, 0.2496626180836707, 0.21592442645074225, 0.8002699055330634, 0.7530364372469636, 0.11470985155195682, 0.11336032388663968, 0.11336032388663968, 0.11201079622132254, 0.1106612685560054, 0.10256410256410256, 0.10256410256410256, 0.10121457489878542, 0.10121457489878542, 0.10121457489878542, 0.8232118758434548, 0.10121457489878542, 0.10121457489878542, 0.09986504723346828, 0.09986504723346828, 0.09986504723346828, 0.09986504723346828, 0.09986504723346828, 0.09986504723346828, 0.09986504723346828, 0.09851551956815115, 0.13225371120107962, 0.13225371120107962, 0.10661268556005399, 0.09716599190283401, 0.09716599190283401, 0.09716599190283401, 0.09581646423751687, 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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF1087.gap.json b/pfam_gap_rates/DUF1087.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..3f3a9db0486a92ae187171c34c3e895309f2d877
--- /dev/null
+++ b/pfam_gap_rates/DUF1087.gap.json
@@ -0,0 +1 @@
+{"family": "DUF1087", "n_seqs": 183, "length": 65, "gap_rates": [0.8961748633879781, 0.6065573770491803, 0.3825136612021858, 0.28415300546448086, 0.2185792349726776, 0.20765027322404372, 0.19672131147540983, 0.18579234972677597, 0.1912568306010929, 0.17486338797814208, 0.15846994535519127, 0.15300546448087432, 0.14207650273224043, 0.12021857923497267, 0.8961748633879781, 0.8907103825136612, 0.12568306010928962, 0.7377049180327869, 0.3442622950819672, 0.060109289617486336, 0.04918032786885246, 0.03825136612021858, 0.04371584699453552, 0.02185792349726776, 0.00546448087431694, 0.00546448087431694, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.01092896174863388, 0.01092896174863388, 0.0273224043715847, 0.02185792349726776, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.02185792349726776, 0.02185792349726776, 0.16939890710382513, 0.17486338797814208, 0.03278688524590164, 0.060109289617486336, 0.18579234972677597, 0.2786885245901639, 0.36065573770491804, 0.4262295081967213, 0.5300546448087432], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF1126.gap.json b/pfam_gap_rates/DUF1126.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ec05f2b12a987a85321f32b63ffcea652d2499f5
--- /dev/null
+++ b/pfam_gap_rates/DUF1126.gap.json
@@ -0,0 +1 @@
+{"family": "DUF1126", "n_seqs": 879, "length": 140, "gap_rates": [0.8930602957906713, 0.42775881683731515, 0.3253697383390216, 0.2912400455062571, 0.2627986348122867, 0.229806598407281, 0.21274175199089876, 0.17292377701934017, 0.13651877133105803, 0.12059158134243458, 0.10011376564277588, 0.09556313993174062, 0.08191126279863481, 0.06598407281001138, 0.06598407281001138, 0.06370875995449374, 0.06257110352673492, 0.06029579067121729, 0.06029579067121729, 0.06029579067121729, 0.32992036405005687, 0.9249146757679181, 0.9419795221843004, 0.6700796359499431, 0.40955631399317405, 0.4050056882821388, 0.12059158134243458, 0.08418657565415244, 0.07281001137656427, 0.06825938566552901, 0.06257110352673492, 0.06598407281001138, 0.051194539249146756, 0.7349260523321957, 0.7337883959044369, 0.03299203640500569, 0.02844141069397042, 0.027303754266211604, 0.027303754266211604, 0.027303754266211604, 0.027303754266211604, 0.027303754266211604, 0.027303754266211604, 0.02502844141069397, 0.026166097838452786, 0.027303754266211604, 0.027303754266211604, 0.027303754266211604, 0.027303754266211604, 0.027303754266211604, 0.027303754266211604, 0.027303754266211604, 0.027303754266211604, 0.027303754266211604, 0.02957906712172924, 0.03754266211604096, 0.11262798634812286, 0.10238907849829351, 0.08191126279863481, 0.8191126279863481, 0.7224118316268487, 0.0875995449374289, 0.26393629124004553, 0.08418657565415244, 0.026166097838452786, 0.023890784982935155, 0.02161547212741752, 0.022753128555176336, 0.02161547212741752, 0.022753128555176336, 0.022753128555176336, 0.022753128555176336, 0.02161547212741752, 0.022753128555176336, 0.027303754266211604, 0.9271899886234357, 0.8680318543799772, 0.3117178612059158, 0.323094425483504, 0.5631399317406144, 0.646188850967008, 0.7246871444823664, 0.7531285551763367, 0.7895335608646189, 0.8191126279863481, 0.8361774744027304, 0.8805460750853242, 0.9362912400455062, 0.944254835039818, 0.9476678043230944, 0.9431171786120591, 0.926052332195677, 0.856655290102389, 0.8225255972696246, 0.8156996587030717, 0.7656427758816837, 0.732650739476678, 0.6564277588168373, 0.6348122866894198, 0.5483503981797497, 0.2775881683731513, 0.19340159271899887, 0.17064846416382254, 0.16837315130830488, 0.10238907849829351, 0.9271899886234357, 0.9408418657565415, 0.9431171786120591, 0.9431171786120591, 0.9271899886234357, 0.9271899886234357, 0.08987485779294653, 0.02844141069397042, 0.027303754266211604, 0.027303754266211604, 0.026166097838452786, 0.026166097838452786, 0.026166097838452786, 0.026166097838452786, 0.026166097838452786, 0.026166097838452786, 0.026166097838452786, 0.02844141069397042, 0.02844141069397042, 0.02844141069397042, 0.030716723549488054, 0.030716723549488054, 0.030716723549488054, 0.038680318543799774, 0.040955631399317405, 0.040955631399317405, 0.040955631399317405, 0.04209328782707622, 0.04323094425483504, 0.04436860068259386, 0.053469852104664393, 0.0875995449374289, 0.1080773606370876, 0.13993174061433447, 0.2764505119453925], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF1134.gap.json b/pfam_gap_rates/DUF1134.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..fdc722f43d82b1a30a79b7e1ec5fa1774121ee05
--- /dev/null
+++ b/pfam_gap_rates/DUF1134.gap.json
@@ -0,0 +1 @@
+{"family": "DUF1134", "n_seqs": 113, "length": 161, "gap_rates": [0.7699115044247787, 0.10619469026548672, 0.05309734513274336, 0.05309734513274336, 0.05309734513274336, 0.05309734513274336, 0.05309734513274336, 0.05309734513274336, 0.05309734513274336, 0.05309734513274336, 0.04424778761061947, 0.04424778761061947, 0.04424778761061947, 0.04424778761061947, 0.035398230088495575, 0.035398230088495575, 0.035398230088495575, 0.035398230088495575, 0.035398230088495575, 0.035398230088495575, 0.035398230088495575, 0.035398230088495575, 0.035398230088495575, 0.035398230088495575, 0.035398230088495575, 0.035398230088495575, 0.035398230088495575, 0.035398230088495575, 0.035398230088495575, 0.017699115044247787, 0.017699115044247787, 0.017699115044247787, 0.017699115044247787, 0.017699115044247787, 0.017699115044247787, 0.017699115044247787, 0.017699115044247787, 0.008849557522123894, 0.008849557522123894, 0.008849557522123894, 0.008849557522123894, 0.008849557522123894, 0.008849557522123894, 0.008849557522123894, 0.008849557522123894, 0.008849557522123894, 0.008849557522123894, 0.008849557522123894, 0.008849557522123894, 0.008849557522123894, 0.008849557522123894, 0.008849557522123894, 0.008849557522123894, 0.008849557522123894, 0.008849557522123894, 0.008849557522123894, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.9469026548672567, 0.008849557522123894, 0.017699115044247787, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.02654867256637168, 0.008849557522123894, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.008849557522123894, 0.008849557522123894, 0.017699115044247787, 0.017699115044247787, 0.017699115044247787, 0.02654867256637168, 0.02654867256637168, 0.02654867256637168, 0.02654867256637168, 0.02654867256637168, 0.035398230088495575, 0.035398230088495575, 0.04424778761061947, 0.04424778761061947, 0.04424778761061947, 0.04424778761061947, 0.04424778761061947, 0.04424778761061947, 0.04424778761061947, 0.05309734513274336], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF116.gap.json b/pfam_gap_rates/DUF116.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..6362156ebcdb4e34f1f5c638960628cb442c9149
--- /dev/null
+++ b/pfam_gap_rates/DUF116.gap.json
@@ -0,0 +1 @@
+{"family": "DUF116", "n_seqs": 177, "length": 170, "gap_rates": [0.615819209039548, 0.4180790960451977, 0.3446327683615819, 0.3107344632768362, 0.2994350282485876, 0.2824858757062147, 0.2768361581920904, 0.2768361581920904, 0.2542372881355932, 0.1864406779661017, 0.1694915254237288, 0.13559322033898305, 0.12429378531073447, 0.12429378531073447, 0.10734463276836158, 0.10734463276836158, 0.10734463276836158, 0.10734463276836158, 0.096045197740113, 0.0903954802259887, 0.0847457627118644, 0.0847457627118644, 0.0847457627118644, 0.0847457627118644, 0.0847457627118644, 0.0847457627118644, 0.0847457627118644, 0.0847457627118644, 0.07909604519774012, 0.07909604519774012, 0.0847457627118644, 0.07344632768361582, 0.07909604519774012, 0.07909604519774012, 0.21468926553672316, 0.2033898305084746, 0.05649717514124294, 0.02824858757062147, 0.022598870056497175, 0.01694915254237288, 0.01694915254237288, 0.01694915254237288, 0.01694915254237288, 0.01694915254237288, 0.01694915254237288, 0.01694915254237288, 0.01694915254237288, 0.01694915254237288, 0.01694915254237288, 0.903954802259887, 0.8983050847457628, 0.01694915254237288, 0.01694915254237288, 0.9152542372881356, 0.022598870056497175, 0.022598870056497175, 0.022598870056497175, 0.022598870056497175, 0.022598870056497175, 0.02824858757062147, 0.02824858757062147, 0.03389830508474576, 0.0847457627118644, 0.0903954802259887, 0.0847457627118644, 0.02824858757062147, 0.022598870056497175, 0.022598870056497175, 0.022598870056497175, 0.022598870056497175, 0.022598870056497175, 0.02824858757062147, 0.8813559322033898, 0.022598870056497175, 0.022598870056497175, 0.022598870056497175, 0.022598870056497175, 0.01694915254237288, 0.01694915254237288, 0.01694915254237288, 0.01694915254237288, 0.01694915254237288, 0.01694915254237288, 0.01694915254237288, 0.022598870056497175, 0.03389830508474576, 0.02824858757062147, 0.02824858757062147, 0.9378531073446328, 0.022598870056497175, 0.022598870056497175, 0.022598870056497175, 0.022598870056497175, 0.022598870056497175, 0.022598870056497175, 0.022598870056497175, 0.02824858757062147, 0.02824858757062147, 0.022598870056497175, 0.022598870056497175, 0.022598870056497175, 0.03954802259887006, 0.03389830508474576, 0.03389830508474576, 0.03389830508474576, 0.03389830508474576, 0.03389830508474576, 0.03389830508474576, 0.03389830508474576, 0.03389830508474576, 0.903954802259887, 0.9378531073446328, 0.8926553672316384, 0.03389830508474576, 0.03389830508474576, 0.03389830508474576, 0.03389830508474576, 0.03389830508474576, 0.03389830508474576, 0.03389830508474576, 0.03389830508474576, 0.03389830508474576, 0.03389830508474576, 0.03389830508474576, 0.03389830508474576, 0.02824858757062147, 0.02824858757062147, 0.02824858757062147, 0.02824858757062147, 0.02824858757062147, 0.02824858757062147, 0.02824858757062147, 0.02824858757062147, 0.06779661016949153, 0.062146892655367235, 0.03389830508474576, 0.03389830508474576, 0.02824858757062147, 0.02824858757062147, 0.02824858757062147, 0.02824858757062147, 0.02824858757062147, 0.02824858757062147, 0.02824858757062147, 0.02824858757062147, 0.02824858757062147, 0.03389830508474576, 0.03389830508474576, 0.9152542372881356, 0.9152542372881356, 0.9152542372881356, 0.9322033898305084, 0.9152542372881356, 0.9152542372881356, 0.9152542372881356, 0.9152542372881356, 0.03954802259887006, 0.05084745762711865, 0.10734463276836158, 0.10734463276836158, 0.11299435028248588, 0.11299435028248588, 0.12429378531073447, 0.12429378531073447, 0.12994350282485875, 0.12994350282485875, 0.12994350282485875, 0.15254237288135594, 0.2598870056497175, 0.6045197740112994], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF1191.gap.json b/pfam_gap_rates/DUF1191.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b848dc1fc7d8b18ba2a2faa6ad964e84359a00ab
--- /dev/null
+++ b/pfam_gap_rates/DUF1191.gap.json
@@ -0,0 +1 @@
+{"family": "DUF1191", "n_seqs": 125, "length": 307, "gap_rates": [0.664, 0.32, 0.184, 0.16, 0.136, 0.12, 0.12, 0.12, 0.12, 0.12, 0.12, 0.12, 0.12, 0.12, 0.12, 0.12, 0.12, 0.12, 0.136, 0.768, 0.576, 0.128, 0.12, 0.12, 0.12, 0.12, 0.12, 0.12, 0.12, 0.12, 0.944, 0.12, 0.12, 0.12, 0.12, 0.12, 0.12, 0.112, 0.112, 0.112, 0.096, 0.096, 0.096, 0.096, 0.096, 0.096, 0.096, 0.096, 0.096, 0.096, 0.096, 0.104, 0.104, 0.104, 0.104, 0.104, 0.104, 0.104, 0.6, 0.112, 0.112, 0.112, 0.112, 0.112, 0.112, 0.112, 0.112, 0.112, 0.112, 0.112, 0.12, 0.12, 0.104, 0.104, 0.104, 0.104, 0.936, 0.104, 0.104, 0.104, 0.088, 0.088, 0.088, 0.08, 0.08, 0.08, 0.08, 0.08, 0.8, 0.08, 0.08, 0.08, 0.08, 0.784, 0.904, 0.776, 0.104, 0.864, 0.104, 0.104, 0.088, 0.072, 0.072, 0.816, 0.072, 0.072, 0.072, 0.072, 0.072, 0.072, 0.072, 0.072, 0.072, 0.072, 0.072, 0.072, 0.072, 0.072, 0.072, 0.072, 0.072, 0.072, 0.936, 0.784, 0.088, 0.104, 0.112, 0.192, 0.2, 0.16, 0.08, 0.072, 0.072, 0.08, 0.08, 0.096, 0.112, 0.104, 0.104, 0.096, 0.88, 0.096, 0.096, 0.096, 0.096, 0.096, 0.096, 0.096, 0.096, 0.496, 0.096, 0.112, 0.136, 0.112, 0.168, 0.184, 0.872, 0.944, 0.912, 0.856, 0.568, 0.248, 0.176, 0.152, 0.136, 0.112, 0.112, 0.112, 0.112, 0.112, 0.112, 0.112, 0.112, 0.112, 0.112, 0.112, 0.12, 0.12, 0.12, 0.944, 0.12, 0.12, 0.112, 0.112, 0.872, 0.112, 0.112, 0.112, 0.112, 0.112, 0.112, 0.112, 0.112, 0.112, 0.112, 0.112, 0.112, 0.112, 0.112, 0.112, 0.112, 0.112, 0.824, 0.144, 0.36, 0.392, 0.368, 0.296, 0.264, 0.328, 0.312, 0.608, 0.624, 0.64, 0.696, 0.744, 0.8, 0.912, 0.936, 0.904, 0.768, 0.728, 0.664, 0.632, 0.616, 0.592, 0.536, 0.432, 0.328, 0.232, 0.176, 0.128, 0.128, 0.112, 0.128, 0.112, 0.112, 0.112, 0.944, 0.352, 0.168, 0.096, 0.104, 0.096, 0.096, 0.096, 0.096, 0.096, 0.096, 0.104, 0.112, 0.112, 0.104, 0.096, 0.096, 0.104, 0.104, 0.096, 0.096, 0.088, 0.088, 0.096, 0.096, 0.944, 0.088, 0.088, 0.096, 0.088, 0.088, 0.848, 0.096, 0.096, 0.096, 0.096, 0.096, 0.096, 0.104, 0.104, 0.112, 0.112, 0.112, 0.112, 0.112, 0.112, 0.112, 0.112, 0.112, 0.112, 0.112, 0.112, 0.12, 0.12, 0.128, 0.128, 0.128, 0.128, 0.144, 0.152, 0.152, 0.152, 0.152, 0.152, 0.152, 0.152, 0.152, 0.152, 0.176], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF1242.gap.json b/pfam_gap_rates/DUF1242.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e8825e070c3b326b05f699000486e912ba7fc4c0
--- /dev/null
+++ b/pfam_gap_rates/DUF1242.gap.json
@@ -0,0 +1 @@
+{"family": "DUF1242", "n_seqs": 259, "length": 39, "gap_rates": [0.1776061776061776, 0.08108108108108109, 0.04247104247104247, 0.03474903474903475, 0.019305019305019305, 0.003861003861003861, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.806949806949807, 0.806949806949807, 0.0, 0.0, 0.003861003861003861, 0.0, 0.0, 0.0, 0.0, 0.13513513513513514, 0.9343629343629344, 0.019305019305019305, 0.915057915057915, 0.011583011583011582, 0.015444015444015444, 0.03861003861003861, 0.04247104247104247, 0.04633204633204633, 0.05405405405405406, 0.07722007722007722, 0.12355212355212356], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF1244.gap.json b/pfam_gap_rates/DUF1244.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..839764f20ff6105798d944e2cfed67a3dc26db2e
--- /dev/null
+++ b/pfam_gap_rates/DUF1244.gap.json
@@ -0,0 +1 @@
+{"family": "DUF1244", "n_seqs": 245, "length": 67, "gap_rates": [0.04081632653061224, 0.02040816326530612, 0.02040816326530612, 0.02040816326530612, 0.02040816326530612, 0.02040816326530612, 0.0163265306122449, 0.0163265306122449, 0.0163265306122449, 0.0163265306122449, 0.0163265306122449, 0.0163265306122449, 0.0163265306122449, 0.0163265306122449, 0.0163265306122449, 0.0163265306122449, 0.0163265306122449, 0.0163265306122449, 0.0163265306122449, 0.0163265306122449, 0.02040816326530612, 0.024489795918367346, 0.024489795918367346, 0.024489795918367346, 0.05714285714285714, 0.08571428571428572, 0.10612244897959183, 0.11428571428571428, 0.08979591836734693, 0.08571428571428572, 0.0163265306122449, 0.012244897959183673, 0.012244897959183673, 0.0163265306122449, 0.0163265306122449, 0.0163265306122449, 0.0163265306122449, 0.0163265306122449, 0.0163265306122449, 0.0163265306122449, 0.012244897959183673, 0.012244897959183673, 0.012244897959183673, 0.012244897959183673, 0.012244897959183673, 0.0163265306122449, 0.0163265306122449, 0.0163265306122449, 0.0163265306122449, 0.0163265306122449, 0.0163265306122449, 0.0163265306122449, 0.02857142857142857, 0.0163265306122449, 0.0163265306122449, 0.053061224489795916, 0.061224489795918366, 0.061224489795918366, 0.061224489795918366, 0.061224489795918366, 0.061224489795918366, 0.061224489795918366, 0.06938775510204082, 0.06938775510204082, 0.07346938775510205, 0.08979591836734693, 0.6857142857142857], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF1263.gap.json b/pfam_gap_rates/DUF1263.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..165ad49a83ae9daa444c94ba41de4da5da99e956
--- /dev/null
+++ b/pfam_gap_rates/DUF1263.gap.json
@@ -0,0 +1 @@
+{"family": "DUF1263", "n_seqs": 131, "length": 108, "gap_rates": [0.6870229007633588, 0.6717557251908397, 0.6717557251908397, 0.6641221374045801, 0.6641221374045801, 0.5725190839694656, 0.5343511450381679, 0.5267175572519084, 0.5190839694656488, 0.5190839694656488, 0.5190839694656488, 0.5038167938931297, 0.5038167938931297, 0.5038167938931297, 0.5038167938931297, 0.5038167938931297, 0.4961832061068702, 0.4961832061068702, 0.4961832061068702, 0.4961832061068702, 0.4961832061068702, 0.48854961832061067, 0.48091603053435117, 0.45038167938931295, 0.45038167938931295, 0.45038167938931295, 0.45038167938931295, 0.44274809160305345, 0.45038167938931295, 0.45038167938931295, 0.45038167938931295, 0.44274809160305345, 0.44274809160305345, 0.44274809160305345, 0.44274809160305345, 0.45038167938931295, 0.4580152671755725, 0.46564885496183206, 0.46564885496183206, 0.46564885496183206, 0.46564885496183206, 0.4580152671755725, 0.4580152671755725, 0.4580152671755725, 0.44274809160305345, 0.4351145038167939, 0.44274809160305345, 0.45038167938931295, 0.45038167938931295, 0.3816793893129771, 0.366412213740458, 0.366412213740458, 0.19083969465648856, 0.183206106870229, 0.183206106870229, 0.183206106870229, 0.183206106870229, 0.1297709923664122, 0.11450381679389313, 0.11450381679389313, 0.07633587786259542, 0.06870229007633588, 0.06870229007633588, 0.06870229007633588, 0.06870229007633588, 0.06870229007633588, 0.06870229007633588, 0.06870229007633588, 0.06870229007633588, 0.06870229007633588, 0.06870229007633588, 0.06870229007633588, 0.06870229007633588, 0.06870229007633588, 0.05343511450381679, 0.05343511450381679, 0.05343511450381679, 0.061068702290076333, 0.06870229007633588, 0.06870229007633588, 0.06870229007633588, 0.06870229007633588, 0.06870229007633588, 0.06870229007633588, 0.06870229007633588, 0.06870229007633588, 0.06870229007633588, 0.06870229007633588, 0.06870229007633588, 0.06870229007633588, 0.06870229007633588, 0.07633587786259542, 0.07633587786259542, 0.3282442748091603, 0.07633587786259542, 0.07633587786259542, 0.07633587786259542, 0.07633587786259542, 0.07633587786259542, 0.07633587786259542, 0.09923664122137404, 0.12213740458015267, 0.1450381679389313, 0.16793893129770993, 0.16793893129770993, 0.16793893129770993, 0.16793893129770993, 0.22900763358778625], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF1266.gap.json b/pfam_gap_rates/DUF1266.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..6853bf50de72f4fc307c20129592b3cf586e001e
--- /dev/null
+++ b/pfam_gap_rates/DUF1266.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF1313.gap.json b/pfam_gap_rates/DUF1313.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..876fb53d355db77d900ecaa441f251244c219c9a
--- /dev/null
+++ b/pfam_gap_rates/DUF1313.gap.json
@@ -0,0 +1 @@
+{"family": "DUF1313", "n_seqs": 104, "length": 82, "gap_rates": [0.6153846153846154, 0.21153846153846154, 0.08653846153846154, 0.057692307692307696, 0.057692307692307696, 0.057692307692307696, 0.057692307692307696, 0.057692307692307696, 0.057692307692307696, 0.057692307692307696, 0.04807692307692308, 0.028846153846153848, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.009615384615384616, 0.019230769230769232, 0.019230769230769232, 0.019230769230769232, 0.019230769230769232, 0.019230769230769232, 0.019230769230769232, 0.019230769230769232, 0.019230769230769232, 0.009615384615384616, 0.009615384615384616, 0.009615384615384616, 0.009615384615384616, 0.009615384615384616, 0.009615384615384616, 0.009615384615384616, 0.009615384615384616, 0.009615384615384616, 0.009615384615384616, 0.009615384615384616, 0.009615384615384616, 0.009615384615384616, 0.009615384615384616, 0.009615384615384616, 0.009615384615384616, 0.009615384615384616, 0.009615384615384616, 0.019230769230769232, 0.028846153846153848, 0.019230769230769232, 0.028846153846153848, 0.038461538461538464, 0.10576923076923077, 0.11538461538461539, 0.125, 0.1346153846153846, 0.21153846153846154, 0.2692307692307692, 0.46153846153846156, 0.5673076923076923], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF1394.gap.json b/pfam_gap_rates/DUF1394.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..85ded89f36f836427e190f2b1a6fd8b6540c39ab
--- /dev/null
+++ b/pfam_gap_rates/DUF1394.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF1400.gap.json b/pfam_gap_rates/DUF1400.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e919dcaf5abf0c238ee35b0253665ce47a912822
--- /dev/null
+++ b/pfam_gap_rates/DUF1400.gap.json
@@ -0,0 +1 @@
+{"family": "DUF1400", "n_seqs": 223, "length": 133, "gap_rates": [0.22869955156950672, 0.11659192825112108, 0.07623318385650224, 0.04932735426008968, 0.03587443946188341, 0.03587443946188341, 0.03139013452914798, 0.03139013452914798, 0.03139013452914798, 0.03139013452914798, 0.03139013452914798, 0.03139013452914798, 0.9372197309417041, 0.03139013452914798, 0.03139013452914798, 0.03139013452914798, 0.03139013452914798, 0.03139013452914798, 0.03139013452914798, 0.03139013452914798, 0.026905829596412557, 0.026905829596412557, 0.026905829596412557, 0.026905829596412557, 0.026905829596412557, 0.026905829596412557, 0.026905829596412557, 0.026905829596412557, 0.026905829596412557, 0.02242152466367713, 0.02242152466367713, 0.02242152466367713, 0.02242152466367713, 0.02242152466367713, 0.02242152466367713, 0.017937219730941704, 0.017937219730941704, 0.017937219730941704, 0.017937219730941704, 0.017937219730941704, 0.9103139013452914, 0.9103139013452914, 0.2600896860986547, 0.02242152466367713, 0.026905829596412557, 0.02242152466367713, 0.02242152466367713, 0.02242152466367713, 0.017937219730941704, 0.017937219730941704, 0.017937219730941704, 0.017937219730941704, 0.017937219730941704, 0.017937219730941704, 0.017937219730941704, 0.017937219730941704, 0.017937219730941704, 0.017937219730941704, 0.017937219730941704, 0.017937219730941704, 0.017937219730941704, 0.02242152466367713, 0.03139013452914798, 0.02242152466367713, 0.02242152466367713, 0.02242152466367713, 0.02242152466367713, 0.02242152466367713, 0.02242152466367713, 0.017937219730941704, 0.017937219730941704, 0.017937219730941704, 0.017937219730941704, 0.017937219730941704, 0.017937219730941704, 0.017937219730941704, 0.017937219730941704, 0.017937219730941704, 0.017937219730941704, 0.017937219730941704, 0.013452914798206279, 0.017937219730941704, 0.017937219730941704, 0.017937219730941704, 0.017937219730941704, 0.017937219730941704, 0.017937219730941704, 0.017937219730941704, 0.053811659192825115, 0.02242152466367713, 0.9327354260089686, 0.06278026905829596, 0.06278026905829596, 0.08520179372197309, 0.9327354260089686, 0.09865470852017937, 0.09865470852017937, 0.07623318385650224, 0.04035874439461883, 0.017937219730941704, 0.013452914798206279, 0.008968609865470852, 0.008968609865470852, 0.008968609865470852, 0.008968609865470852, 0.008968609865470852, 0.008968609865470852, 0.008968609865470852, 0.008968609865470852, 0.008968609865470852, 0.008968609865470852, 0.8654708520179372, 0.09417040358744394, 0.008968609865470852, 0.008968609865470852, 0.008968609865470852, 0.008968609865470852, 0.008968609865470852, 0.008968609865470852, 0.008968609865470852, 0.008968609865470852, 0.008968609865470852, 0.008968609865470852, 0.013452914798206279, 0.013452914798206279, 0.026905829596412557, 0.03587443946188341, 0.053811659192825115, 0.21973094170403587, 0.08968609865470852, 0.1031390134529148, 0.12556053811659193, 0.2556053811659193], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF1446.gap.json b/pfam_gap_rates/DUF1446.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..16cdea5953087ed146b89a6898e594195635c629
--- /dev/null
+++ b/pfam_gap_rates/DUF1446.gap.json
@@ -0,0 +1 @@
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diff --git a/pfam_gap_rates/DUF1460.gap.json b/pfam_gap_rates/DUF1460.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f048a3b0dd39bb57e06a2e0393850fc5f60d3678
--- /dev/null
+++ b/pfam_gap_rates/DUF1460.gap.json
@@ -0,0 +1 @@
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diff --git a/pfam_gap_rates/DUF1461.gap.json b/pfam_gap_rates/DUF1461.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..338482583c757d28a9a21c57e054ad52abb8a2e1
--- /dev/null
+++ b/pfam_gap_rates/DUF1461.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF1524.gap.json b/pfam_gap_rates/DUF1524.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ff65a5a9be4de4901cf235cd97c7467a5c24eb41
--- /dev/null
+++ b/pfam_gap_rates/DUF1524.gap.json
@@ -0,0 +1 @@
+{"family": "DUF1524", "n_seqs": 929, "length": 191, "gap_rates": [0.8611410118406889, 0.6480086114101185, 0.6006458557588805, 0.5726587728740581, 0.5392895586652314, 0.527448869752422, 0.5199138858988159, 0.5123789020452099, 0.5005382131324004, 0.4908503767491927, 0.4822389666307858, 0.4703982777179763, 0.45748116254036597, 0.4434876210979548, 0.43379978471474706, 0.418729817007535, 0.41227125941872983, 0.4068891280947255, 0.40043057050592035, 0.3982777179763186, 0.4284176533907427, 0.5069967707212056, 0.9268030139935415, 0.860064585575888, 0.3821313240043057, 0.5285252960172229, 0.5016146393972013, 0.31216361679224974, 0.30355220667384286, 0.2992465016146394, 0.294940796555436, 0.6942949407965554, 0.28632938643702904, 0.2723358449946179, 0.26157158234660927, 0.5231431646932185, 0.2572658772874058, 0.2465016146393972, 0.24004305705059203, 0.3369214208826695, 0.2884822389666308, 0.8503767491926802, 0.27018299246501615, 0.2109795479009688, 0.18729817007534985, 0.17115177610333693, 0.15285252960172227, 0.1722282023681378, 0.9364908503767492, 0.9192680301399354, 0.37782561894510225, 0.18406889128094725, 0.1722282023681378, 0.147470398277718, 0.059203444564047365, 0.5888051668460711, 0.6501614639397201, 0.8342303552206674, 0.891280947255113, 0.9289558665231432, 0.9407965554359526, 0.907427341227126, 0.8654467168998924, 0.6856835306781486, 0.6060279870828849, 0.5834230355220668, 0.01829924650161464, 0.017222820236813777, 0.017222820236813777, 0.017222820236813777, 0.013993541442411194, 0.013993541442411194, 0.013993541442411194, 0.013993541442411194, 0.013993541442411194, 0.013993541442411194, 0.015069967707212056, 0.9451022604951561, 0.02045209903121636, 0.017222820236813777, 0.8331539289558665, 0.8955866523143164, 0.9235737351991389, 0.9343379978471474, 0.9095801937567277, 0.860064585575888, 0.7438105489773951, 0.667384284176534, 0.19806243272335844, 0.155005382131324, 0.12055974165769645, 0.09795479009687837, 0.08934337997847147, 0.0688912809472551, 0.0581270182992465, 0.038751345532831, 0.03552206673842842, 0.02906350914962325, 0.023681377825618945, 0.023681377825618945, 0.03552206673842842, 0.023681377825618945, 0.006458557588805167, 0.005382131324004306, 0.005382131324004306, 0.8568353067814855, 0.8460710441334769, 0.006458557588805167, 0.006458557588805167, 0.006458557588805167, 0.006458557588805167, 0.006458557588805167, 0.006458557588805167, 0.005382131324004306, 0.14854682454251883, 0.1496232508073197, 0.012917115177610334, 0.010764262648008612, 0.7761033369214209, 0.9451022604951561, 0.7782561894510226, 0.7696447793326158, 0.00968783638320775, 0.021528525296017224, 0.012917115177610334, 0.031216361679224973, 0.8783638320775027, 0.8794402583423035, 0.876210979547901, 0.01829924650161464, 0.016146393972012917, 0.022604951560818085, 0.024757804090419805, 0.02583423035522067, 0.030139935414424113, 0.03552206673842842, 0.03552206673842842, 0.03659849300322928, 0.8955866523143164, 0.8998923573735199, 0.8417653390742734, 0.038751345532831, 0.05166846071044134, 0.426264800861141, 0.42303552206673845, 0.8234660925726588, 0.852529601722282, 0.9020452099031216, 0.9311087190527448, 0.946178686759957, 0.9203444564047363, 0.8740581270182992, 0.8342303552206674, 0.7857911733046287, 0.059203444564047365, 0.08073196986006459, 0.0861141011840689, 0.10226049515608181, 0.09364908503767493, 0.10118406889128095, 0.10118406889128095, 0.10226049515608181, 0.1054897739504844, 0.08826695371367062, 0.8482238966630786, 0.9041980624327234, 0.9257265877287406, 0.946178686759957, 0.9364908503767492, 0.9181916038751345, 0.8848223896663079, 0.8073196986006459, 0.10010764262648009, 0.09580193756727665, 0.09472551130247578, 0.09580193756727665, 0.10010764262648009, 0.10764262648008611, 0.116254036598493, 0.12055974165769645, 0.12809472551130247, 0.13455328310010764, 0.13885898815931108, 0.14208826695371368, 0.14531754574811626, 0.1496232508073197, 0.16146393972012918, 0.1743810548977395, 0.19483315392895587, 0.30893433799784714, 0.49192680301399355], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF1529.gap.json b/pfam_gap_rates/DUF1529.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..4923715fc59174d21b96c127a769c3bcbd0513b7
--- /dev/null
+++ b/pfam_gap_rates/DUF1529.gap.json
@@ -0,0 +1 @@
+{"family": "DUF1529", "n_seqs": 166, "length": 123, "gap_rates": [0.24096385542168675, 0.10843373493975904, 0.10240963855421686, 0.0963855421686747, 0.08433734939759036, 0.0783132530120482, 0.07228915662650602, 0.060240963855421686, 0.060240963855421686, 0.060240963855421686, 0.060240963855421686, 0.05421686746987952, 0.05421686746987952, 0.060240963855421686, 0.05421686746987952, 0.8734939759036144, 0.6506024096385542, 0.04819277108433735, 0.04216867469879518, 0.04216867469879518, 0.04216867469879518, 0.04216867469879518, 0.04216867469879518, 0.04216867469879518, 0.03614457831325301, 0.26506024096385544, 0.14457831325301204, 0.09036144578313253, 0.2710843373493976, 0.030120481927710843, 0.030120481927710843, 0.030120481927710843, 0.030120481927710843, 0.030120481927710843, 0.030120481927710843, 0.030120481927710843, 0.0783132530120482, 0.09036144578313253, 0.07228915662650602, 0.12048192771084337, 0.0963855421686747, 0.04216867469879518, 0.030120481927710843, 0.030120481927710843, 0.030120481927710843, 0.030120481927710843, 0.024096385542168676, 0.024096385542168676, 0.024096385542168676, 0.024096385542168676, 0.024096385542168676, 0.024096385542168676, 0.6506024096385542, 0.3192771084337349, 0.05421686746987952, 0.05421686746987952, 0.05421686746987952, 0.030120481927710843, 0.024096385542168676, 0.024096385542168676, 0.018072289156626505, 0.018072289156626505, 0.018072289156626505, 0.018072289156626505, 0.018072289156626505, 0.012048192771084338, 0.012048192771084338, 0.012048192771084338, 0.012048192771084338, 0.012048192771084338, 0.012048192771084338, 0.012048192771084338, 0.012048192771084338, 0.012048192771084338, 0.012048192771084338, 0.012048192771084338, 0.012048192771084338, 0.012048192771084338, 0.012048192771084338, 0.012048192771084338, 0.012048192771084338, 0.012048192771084338, 0.012048192771084338, 0.012048192771084338, 0.012048192771084338, 0.012048192771084338, 0.012048192771084338, 0.012048192771084338, 0.012048192771084338, 0.006024096385542169, 0.006024096385542169, 0.006024096385542169, 0.0, 0.0, 0.0, 0.006024096385542169, 0.006024096385542169, 0.006024096385542169, 0.006024096385542169, 0.006024096385542169, 0.006024096385542169, 0.006024096385542169, 0.006024096385542169, 0.006024096385542169, 0.012048192771084338, 0.012048192771084338, 0.012048192771084338, 0.012048192771084338, 0.9457831325301205, 0.012048192771084338, 0.018072289156626505, 0.018072289156626505, 0.018072289156626505, 0.018072289156626505, 0.018072289156626505, 0.018072289156626505, 0.018072289156626505, 0.024096385542168676, 0.030120481927710843, 0.03614457831325301, 0.04819277108433735, 0.08433734939759036, 0.3192771084337349], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF1533.gap.json b/pfam_gap_rates/DUF1533.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..3bc99e21379c5f39fcb27461c1679d337dd66bce
--- /dev/null
+++ b/pfam_gap_rates/DUF1533.gap.json
@@ -0,0 +1 @@
+{"family": "DUF1533", "n_seqs": 119, "length": 75, "gap_rates": [0.7142857142857143, 0.46218487394957986, 0.16806722689075632, 0.11764705882352941, 0.11764705882352941, 0.10084033613445378, 0.10084033613445378, 0.10084033613445378, 0.05042016806722689, 0.01680672268907563, 0.008403361344537815, 0.008403361344537815, 0.008403361344537815, 0.008403361344537815, 0.008403361344537815, 0.008403361344537815, 0.008403361344537815, 0.008403361344537815, 0.5210084033613446, 0.5714285714285714, 0.6470588235294118, 0.7394957983193278, 0.8403361344537815, 0.8823529411764706, 0.9243697478991597, 0.907563025210084, 0.8823529411764706, 0.7983193277310925, 0.6974789915966386, 0.6218487394957983, 0.5378151260504201, 0.4957983193277311, 0.07563025210084033, 0.04201680672268908, 0.008403361344537815, 0.008403361344537815, 0.008403361344537815, 0.008403361344537815, 0.01680672268907563, 0.31932773109243695, 0.03361344537815126, 0.0, 0.008403361344537815, 0.13445378151260504, 0.7142857142857143, 0.0, 0.0, 0.0, 0.0, 0.01680672268907563, 0.0, 0.008403361344537815, 0.008403361344537815, 0.17647058823529413, 0.0, 0.0, 0.10084033613445378, 0.008403361344537815, 0.008403361344537815, 0.008403361344537815, 0.008403361344537815, 0.008403361344537815, 0.008403361344537815, 0.008403361344537815, 0.025210084033613446, 0.058823529411764705, 0.08403361344537816, 0.08403361344537816, 0.1092436974789916, 0.15126050420168066, 0.17647058823529413, 0.19327731092436976, 0.2689075630252101, 0.33613445378151263, 0.5882352941176471], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF1537.gap.json b/pfam_gap_rates/DUF1537.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..8517625ff55c2aa4ad6e4015b1c79b4b4ce56a06
--- /dev/null
+++ b/pfam_gap_rates/DUF1537.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF155.gap.json b/pfam_gap_rates/DUF155.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..8ddef5629e9bbfe71553317ae7facc91866d98af
--- /dev/null
+++ b/pfam_gap_rates/DUF155.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF1593.gap.json b/pfam_gap_rates/DUF1593.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..530c135be26f90759a38ffebf24dcbef031e6822
--- /dev/null
+++ b/pfam_gap_rates/DUF1593.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF167.gap.json b/pfam_gap_rates/DUF167.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b327672671ee7e4bb736a8734be5b901555d63c1
--- /dev/null
+++ b/pfam_gap_rates/DUF167.gap.json
@@ -0,0 +1 @@
+{"family": "DUF167", "n_seqs": 1017, "length": 78, "gap_rates": [0.8741396263520157, 0.40412979351032446, 0.1288102261553589, 0.061946902654867256, 0.04129793510324484, 0.0344149459193707, 0.03343166175024582, 0.032448377581120944, 0.028515240904621434, 0.028515240904621434, 0.028515240904621434, 0.028515240904621434, 0.028515240904621434, 0.02753195673549656, 0.02654867256637168, 0.025565388397246803, 0.024582104228121928, 0.02359882005899705, 0.7522123893805309, 0.7463126843657817, 0.7590953785644051, 0.7217305801376598, 0.7463126843657817, 0.19567354965585054, 0.12684365781710916, 0.09931170108161258, 0.07866273352999016, 0.028515240904621434, 0.014749262536873156, 0.008849557522123894, 0.008849557522123894, 0.007866273352999017, 0.00688298918387414, 0.0058997050147492625, 0.0058997050147492625, 0.004916420845624385, 0.004916420845624385, 0.004916420845624385, 0.004916420845624385, 0.0029498525073746312, 0.0029498525073746312, 0.0019665683382497543, 0.003933136676499509, 0.003933136676499509, 0.003933136676499509, 0.003933136676499509, 0.0058997050147492625, 0.004916420845624385, 0.004916420845624385, 0.004916420845624385, 0.004916420845624385, 0.004916420845624385, 0.00688298918387414, 0.0058997050147492625, 0.008849557522123894, 0.011799410029498525, 0.02753195673549656, 0.02753195673549656, 0.028515240904621434, 0.01966568338249754, 0.017699115044247787, 0.01671583087512291, 0.018682399213372666, 0.01966568338249754, 0.021632251720747297, 0.021632251720747297, 0.024582104228121928, 0.02753195673549656, 0.029498525073746312, 0.03048180924287119, 0.03048180924287119, 0.03048180924287119, 0.03048180924287119, 0.03146509341199607, 0.03638151425762045, 0.04228121927236971, 0.10226155358898721, 0.8407079646017699], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF1677.gap.json b/pfam_gap_rates/DUF1677.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..37765ab0fca3acdb0ff8df714858230004a3a401
--- /dev/null
+++ b/pfam_gap_rates/DUF1677.gap.json
@@ -0,0 +1 @@
+{"family": "DUF1677", "n_seqs": 235, "length": 95, "gap_rates": [0.3617021276595745, 0.20425531914893616, 0.1276595744680851, 0.05531914893617021, 0.03404255319148936, 0.029787234042553193, 0.029787234042553193, 0.029787234042553193, 0.029787234042553193, 0.029787234042553193, 0.029787234042553193, 0.029787234042553193, 0.02553191489361702, 0.02127659574468085, 0.02127659574468085, 0.02127659574468085, 0.01702127659574468, 0.01276595744680851, 0.01276595744680851, 0.00851063829787234, 0.00851063829787234, 0.01276595744680851, 0.01276595744680851, 0.01276595744680851, 0.01702127659574468, 0.01702127659574468, 0.01702127659574468, 0.01702127659574468, 0.02127659574468085, 0.02127659574468085, 0.029787234042553193, 0.03404255319148936, 0.03404255319148936, 0.03404255319148936, 0.03404255319148936, 0.03404255319148936, 0.03404255319148936, 0.03404255319148936, 0.03404255319148936, 0.03404255319148936, 0.03404255319148936, 0.029787234042553193, 0.03404255319148936, 0.0425531914893617, 0.04680851063829787, 0.04680851063829787, 0.8297872340425532, 0.9361702127659575, 0.9404255319148936, 0.8936170212765957, 0.7361702127659574, 0.39574468085106385, 0.2297872340425532, 0.07234042553191489, 0.07659574468085106, 0.06808510638297872, 0.06382978723404255, 0.06382978723404255, 0.059574468085106386, 0.059574468085106386, 0.06382978723404255, 0.06382978723404255, 0.06382978723404255, 0.06382978723404255, 0.06382978723404255, 0.06382978723404255, 0.06382978723404255, 0.06808510638297872, 0.06808510638297872, 0.06808510638297872, 0.07234042553191489, 0.06808510638297872, 0.07234042553191489, 0.08085106382978724, 0.3404255319148936, 0.3446808510638298, 0.3148936170212766, 0.2553191489361702, 0.8042553191489362, 0.07659574468085106, 0.07659574468085106, 0.07659574468085106, 0.07659574468085106, 0.07659574468085106, 0.07659574468085106, 0.07659574468085106, 0.07659574468085106, 0.07659574468085106, 0.07659574468085106, 0.08085106382978724, 0.08085106382978724, 0.08085106382978724, 0.08085106382978724, 0.08085106382978724, 0.1574468085106383], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF1697.gap.json b/pfam_gap_rates/DUF1697.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..84e18a81e9d926d029d9f0b3a60492b08b35dcf9
--- /dev/null
+++ b/pfam_gap_rates/DUF1697.gap.json
@@ -0,0 +1 @@
+{"family": "DUF1697", "n_seqs": 436, "length": 146, "gap_rates": [0.31422018348623854, 0.3486238532110092, 0.10091743119266056, 0.06651376146788991, 0.052752293577981654, 0.0481651376146789, 0.0481651376146789, 0.0481651376146789, 0.0481651376146789, 0.0481651376146789, 0.06880733944954129, 0.06880733944954129, 0.052752293577981654, 0.05045871559633028, 0.05045871559633028, 0.1743119266055046, 0.05963302752293578, 0.1444954128440367, 0.045871559633027525, 0.04128440366972477, 0.02981651376146789, 0.02981651376146789, 0.027522935779816515, 0.027522935779816515, 0.027522935779816515, 0.027522935779816515, 0.027522935779816515, 0.027522935779816515, 0.02522935779816514, 0.022935779816513763, 0.022935779816513763, 0.02522935779816514, 0.022935779816513763, 0.022935779816513763, 0.027522935779816515, 0.027522935779816515, 0.027522935779816515, 0.027522935779816515, 0.027522935779816515, 0.02981651376146789, 0.02981651376146789, 0.02981651376146789, 0.02981651376146789, 0.02981651376146789, 0.02981651376146789, 0.02981651376146789, 0.027522935779816515, 0.027522935779816515, 0.9197247706422018, 0.5298165137614679, 0.04357798165137615, 0.05045871559633028, 0.045871559633027525, 0.04357798165137615, 0.045871559633027525, 0.0389908256880734, 0.034403669724770644, 0.034403669724770644, 0.03211009174311927, 0.02981651376146789, 0.027522935779816515, 0.02522935779816514, 0.02522935779816514, 0.02522935779816514, 0.022935779816513763, 0.022935779816513763, 0.02981651376146789, 0.02981651376146789, 0.027522935779816515, 0.027522935779816515, 0.027522935779816515, 0.02981651376146789, 0.027522935779816515, 0.027522935779816515, 0.027522935779816515, 0.02981651376146789, 0.02981651376146789, 0.027522935779816515, 0.027522935779816515, 0.027522935779816515, 0.027522935779816515, 0.027522935779816515, 0.027522935779816515, 0.027522935779816515, 0.027522935779816515, 0.02981651376146789, 0.02981651376146789, 0.027522935779816515, 0.02981651376146789, 0.02981651376146789, 0.03211009174311927, 0.034403669724770644, 0.03669724770642202, 0.03669724770642202, 0.03669724770642202, 0.0389908256880734, 0.9243119266055045, 0.9426605504587156, 0.944954128440367, 0.9495412844036697, 0.944954128440367, 0.9357798165137615, 0.6330275229357798, 0.3922018348623853, 0.24311926605504589, 0.06192660550458716, 0.052752293577981654, 0.045871559633027525, 0.04128440366972477, 0.04357798165137615, 0.04357798165137615, 0.04357798165137615, 0.045871559633027525, 0.045871559633027525, 0.045871559633027525, 0.045871559633027525, 0.045871559633027525, 0.08256880733944955, 0.7821100917431193, 0.07339449541284404, 0.06880733944954129, 0.0779816513761468, 0.08027522935779817, 0.09174311926605505, 0.10321100917431193, 0.11238532110091744, 0.11238532110091744, 0.11238532110091744, 0.11926605504587157, 0.13302752293577982, 0.1651376146788991, 0.22935779816513763, 0.22935779816513763, 0.1651376146788991, 0.1628440366972477, 0.1628440366972477, 0.16743119266055045, 0.17660550458715596, 0.1811926605504587, 0.19724770642201836, 0.2018348623853211, 0.20871559633027523, 0.22247706422018348, 0.2408256880733945, 0.2706422018348624, 0.3302752293577982], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF1764.gap.json b/pfam_gap_rates/DUF1764.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..7b44951b1d6cf14318d57f00dff449df6faa7159
--- /dev/null
+++ b/pfam_gap_rates/DUF1764.gap.json
@@ -0,0 +1 @@
+{"family": "DUF1764", "n_seqs": 145, "length": 139, "gap_rates": [0.8206896551724138, 0.696551724137931, 0.6137931034482759, 0.5310344827586206, 0.496551724137931, 0.45517241379310347, 0.4413793103448276, 0.4413793103448276, 0.42758620689655175, 0.41379310344827586, 0.38620689655172413, 0.3793103448275862, 0.3793103448275862, 0.3793103448275862, 0.36551724137931035, 0.36551724137931035, 0.3586206896551724, 0.3586206896551724, 0.35172413793103446, 0.33793103448275863, 0.3103448275862069, 0.3103448275862069, 0.31724137931034485, 0.30344827586206896, 0.296551724137931, 0.30344827586206896, 0.30344827586206896, 0.3310344827586207, 0.3724137931034483, 0.4413793103448276, 0.4896551724137931, 0.32413793103448274, 0.5655172413793104, 0.6827586206896552, 0.7724137931034483, 0.8, 0.8344827586206897, 0.8551724137931035, 0.8620689655172413, 0.8620689655172413, 0.8758620689655172, 0.896551724137931, 0.9103448275862069, 0.9310344827586207, 0.9310344827586207, 0.9310344827586207, 0.9241379310344827, 0.9103448275862069, 0.8896551724137931, 0.8689655172413793, 0.8620689655172413, 0.8620689655172413, 0.8482758620689655, 0.8344827586206897, 0.7862068965517242, 0.7379310344827587, 0.6275862068965518, 0.503448275862069, 0.18620689655172415, 0.1724137931034483, 0.15862068965517243, 0.11724137931034483, 0.10344827586206896, 0.09655172413793103, 0.08275862068965517, 0.0896551724137931, 0.06896551724137931, 0.06206896551724138, 0.04827586206896552, 0.041379310344827586, 0.027586206896551724, 0.034482758620689655, 0.034482758620689655, 0.034482758620689655, 0.027586206896551724, 0.027586206896551724, 0.027586206896551724, 0.027586206896551724, 0.034482758620689655, 0.041379310344827586, 0.05517241379310345, 0.04827586206896552, 0.04827586206896552, 0.06206896551724138, 0.06206896551724138, 0.034482758620689655, 0.7655172413793103, 0.8344827586206897, 0.896551724137931, 0.9241379310344827, 0.9448275862068966, 0.9448275862068966, 0.9379310344827586, 0.9172413793103448, 0.8689655172413793, 0.8068965517241379, 0.6827586206896552, 0.2689655172413793, 0.08275862068965517, 0.020689655172413793, 0.013793103448275862, 0.006896551724137931, 0.006896551724137931, 0.0, 0.0, 0.0, 0.0, 0.006896551724137931, 0.006896551724137931, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.006896551724137931, 0.006896551724137931, 0.9172413793103448, 0.6758620689655173, 0.3586206896551724, 0.06896551724137931, 0.06206896551724138, 0.08275862068965517, 0.13793103448275862, 0.15172413793103448, 0.15172413793103448, 0.16551724137931034, 0.1724137931034483, 0.1724137931034483, 0.1793103448275862, 0.18620689655172415, 0.18620689655172415, 0.18620689655172415, 0.19310344827586207, 0.2689655172413793], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF1768.gap.json b/pfam_gap_rates/DUF1768.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ee729ee324dcb8417e52b11caa0c7265c67b161a
--- /dev/null
+++ b/pfam_gap_rates/DUF1768.gap.json
@@ -0,0 +1 @@
+{"family": "DUF1768", "n_seqs": 846, "length": 205, "gap_rates": [0.6572104018912529, 0.43380614657210403, 0.41371158392434987, 0.4078014184397163, 0.4846335697399527, 0.4940898345153664, 0.47044917257683216, 0.8711583924349882, 0.8936170212765957, 0.9113475177304965, 0.8983451536643026, 0.8806146572104019, 0.7813238770685579, 0.3073286052009456, 0.2458628841607565, 0.20803782505910165, 0.19976359338061467, 0.18912529550827423, 0.18557919621749408, 0.18557919621749408, 0.18439716312056736, 0.18557919621749408, 0.26004728132387706, 0.2553191489361702, 0.23995271867612294, 0.23995271867612294, 0.26122931442080377, 0.2718676122931442, 0.2765957446808511, 0.2848699763593381, 0.29550827423167847, 0.27423167848699764, 0.8026004728132388, 0.7860520094562647, 0.7754137115839244, 0.7411347517730497, 0.942080378250591, 0.9468085106382979, 0.9491725768321513, 0.9432624113475178, 0.9361702127659575, 0.6465721040189125, 0.6122931442080378, 0.5721040189125296, 0.5319148936170213, 0.508274231678487, 0.08983451536643026, 0.08865248226950355, 0.08865248226950355, 0.08747044917257683, 0.08747044917257683, 0.08747044917257683, 0.09101654846335698, 0.08274231678486997, 0.0933806146572104, 0.0768321513002364, 0.07446808510638298, 0.07328605200945626, 0.3546099290780142, 0.32505910165484636, 0.29550827423167847, 0.0768321513002364, 0.0768321513002364, 0.933806146572104, 0.08628841607565012, 0.06501182033096926, 0.05673758865248227, 0.05319148936170213, 0.8806146572104019, 0.9385342789598109, 0.9479905437352246, 0.9042553191489362, 0.8640661938534279, 0.04728132387706856, 0.04846335697399527, 0.04846335697399527, 0.05200945626477541, 0.05319148936170213, 0.9491725768321513, 0.5047281323877069, 0.05319148936170213, 0.05200945626477541, 0.5460992907801419, 0.04609929078014184, 0.041371158392434985, 0.03900709219858156, 0.03900709219858156, 0.037825059101654845, 0.037825059101654845, 0.037825059101654845, 0.037825059101654845, 0.03664302600472813, 0.034278959810874705, 0.7978723404255319, 0.8475177304964538, 0.925531914893617, 0.9196217494089834, 0.83451536643026, 0.7612293144208038, 0.037825059101654845, 0.08274231678486997, 0.08392434988179669, 0.10047281323877069, 0.2541371158392435, 0.18557919621749408, 0.08274231678486997, 0.06619385342789598, 0.0425531914893617, 0.041371158392434985, 0.037825059101654845, 0.037825059101654845, 0.9278959810874704, 0.03546099290780142, 0.03309692671394799, 0.03309692671394799, 0.031914893617021274, 0.02955082742316785, 0.01773049645390071, 0.016548463356973995, 0.016548463356973995, 0.016548463356973995, 0.015366430260047281, 0.014184397163120567, 0.010638297872340425, 0.008274231678486997, 0.009456264775413711, 0.01182033096926714, 0.026004728132387706, 0.014184397163120567, 0.008274231678486997, 0.008274231678486997, 0.009456264775413711, 0.010638297872340425, 0.010638297872340425, 0.010638297872340425, 0.010638297872340425, 0.010638297872340425, 0.009456264775413711, 0.009456264775413711, 0.010638297872340425, 0.01182033096926714, 0.01182033096926714, 0.013002364066193853, 0.01182033096926714, 0.016548463356973995, 0.01773049645390071, 0.02009456264775414, 0.027186761229314422, 0.06855791962174941, 0.04018912529550828, 0.037825059101654845, 0.037825059101654845, 0.04373522458628842, 0.0425531914893617, 0.04373522458628842, 0.04373522458628842, 0.04491725768321513, 0.31560283687943264, 0.3037825059101655, 0.9468085106382979, 0.9479905437352246, 0.9479905437352246, 0.9468085106382979, 0.9468085106382979, 0.15011820330969267, 0.25177304964539005, 0.508274231678487, 0.46217494089834515, 0.9208037825059102, 0.9385342789598109, 0.9385342789598109, 0.9432624113475178, 0.9479905437352246, 0.9479905437352246, 0.9456264775413712, 0.942080378250591, 0.9385342789598109, 0.9314420803782506, 0.6773049645390071, 0.4574468085106383, 0.45390070921985815, 0.8794326241134752, 0.44799054373522457, 0.4373522458628842, 0.425531914893617, 0.3971631205673759, 0.11465721040189125, 0.21513002364066194, 0.08274231678486997, 0.0768321513002364, 0.07919621749408984, 0.07919621749408984, 0.08156028368794327, 0.08037825059101655, 0.08037825059101655, 0.08037825059101655, 0.08037825059101655, 0.08037825059101655, 0.08156028368794327, 0.08747044917257683, 0.10401891252955082, 0.10638297872340426, 0.13711583924349882, 0.1690307328605201, 0.6016548463356974], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF1801.gap.json b/pfam_gap_rates/DUF1801.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d710d8fc7c294481063139dddbf8d51c8a571b55
--- /dev/null
+++ b/pfam_gap_rates/DUF1801.gap.json
@@ -0,0 +1 @@
+{"family": "DUF1801", "n_seqs": 1173, "length": 135, "gap_rates": [0.7416879795396419, 0.34697357203751067, 0.18840579710144928, 0.09548167092924126, 0.061381074168797956, 0.04774083546462063, 0.041773231031543054, 0.03580562659846547, 0.03410059676044331, 0.02557544757033248, 0.023870417732310314, 0.0196078431372549, 0.03239556692242114, 0.0494458653026428, 0.03239556692242114, 0.061381074168797956, 0.10571184995737426, 0.7894288150042625, 0.7953964194373402, 0.8047740835464621, 0.793691389599318, 0.7297527706734868, 0.042625745950554135, 0.00937766410912191, 0.008525149190110827, 0.008525149190110827, 0.0076726342710997444, 0.008525149190110827, 0.010230179028132993, 0.008525149190110827, 0.927536231884058, 0.00937766410912191, 0.005115089514066497, 0.004262574595055414, 0.004262574595055414, 0.008525149190110827, 0.0076726342710997444, 0.0076726342710997444, 0.1918158567774936, 0.21824381926683717, 0.28388746803069054, 0.33674339300937767, 0.473998294970162, 0.6990622335890878, 0.7442455242966752, 0.9130434782608695, 0.9411764705882353, 0.9437340153452686, 0.9445865302642796, 0.9420289855072463, 0.9343563512361467, 0.7681159420289855, 0.7127024722932651, 0.6649616368286445, 0.36658141517476556, 0.3052003410059676, 0.23955669224211423, 0.19522591645353793, 0.19096334185848252, 0.0034100596760443308, 0.639386189258312, 0.7033248081841432, 0.7885763000852515, 0.8312020460358056, 0.9096334185848253, 0.83461210571185, 0.7979539641943734, 0.7553282182438192, 0.6930946291560103, 0.6334185848252344, 0.0034100596760443308, 0.0017050298380221654, 0.0017050298380221654, 0.0017050298380221654, 0.0017050298380221654, 0.0017050298380221654, 0.49445865302642794, 0.03495311167945439, 0.04603580562659847, 0.0639386189258312, 0.1526001705029838, 0.13981244671781756, 0.05370843989769821, 0.6325660699062233, 0.8337595907928389, 0.8832054560954816, 0.9471440750213129, 0.855072463768116, 0.7621483375959079, 0.18925831202046037, 0.03239556692242114, 0.04688832054560955, 0.04688832054560955, 0.03751065643648764, 0.028132992327365727, 0.023017902813299233, 0.02216538789428815, 0.03751065643648764, 0.040068201193520885, 0.6555839727195226, 0.9309462915601023, 0.8934356351236147, 0.4441602728047741, 0.38618925831202044, 0.03580562659846547, 0.01619778346121057, 0.014492753623188406, 0.011935208866155157, 0.010230179028132993, 0.010230179028132993, 0.010230179028132993, 0.010230179028132993, 0.010230179028132993, 0.010230179028132993, 0.011082693947144074, 0.01619778346121057, 0.01619778346121057, 0.015345268542199489, 0.017902813299232736, 0.013640238704177323, 0.014492753623188406, 0.015345268542199489, 0.8695652173913043, 0.8491048593350383, 0.017902813299232736, 0.017902813299232736, 0.017902813299232736, 0.01875532821824382, 0.02216538789428815, 0.028985507246376812, 0.04774083546462063, 0.09633418584825235, 0.18584825234441602, 0.4092071611253197, 0.7911338448422848], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF1841.gap.json b/pfam_gap_rates/DUF1841.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..302a5f39dca9d0122491df1987526ebecf83568f
--- /dev/null
+++ b/pfam_gap_rates/DUF1841.gap.json
@@ -0,0 +1 @@
+{"family": "DUF1841", "n_seqs": 150, "length": 136, "gap_rates": [0.48, 0.18, 0.14, 0.12666666666666668, 0.12, 0.12, 0.12, 0.11333333333333333, 0.11333333333333333, 0.1, 0.09333333333333334, 0.09333333333333334, 0.09333333333333334, 0.09333333333333334, 0.09333333333333334, 0.09333333333333334, 0.08666666666666667, 0.08666666666666667, 0.08666666666666667, 0.08666666666666667, 0.08666666666666667, 0.08666666666666667, 0.08666666666666667, 0.08, 0.08, 0.07333333333333333, 0.06666666666666667, 0.06666666666666667, 0.06666666666666667, 0.06, 0.06, 0.05333333333333334, 0.05333333333333334, 0.05333333333333334, 0.05333333333333334, 0.05333333333333334, 0.05333333333333334, 0.05333333333333334, 0.05333333333333334, 0.05333333333333334, 0.05333333333333334, 0.05333333333333334, 0.05333333333333334, 0.04, 0.04, 0.04, 0.04666666666666667, 0.25333333333333335, 0.08, 0.05333333333333334, 0.05333333333333334, 0.06, 0.04666666666666667, 0.04, 0.04, 0.03333333333333333, 0.06, 0.06, 0.04666666666666667, 0.04666666666666667, 0.03333333333333333, 0.02666666666666667, 0.02666666666666667, 0.02666666666666667, 0.02666666666666667, 0.02666666666666667, 0.02, 0.02, 0.013333333333333334, 0.013333333333333334, 0.013333333333333334, 0.013333333333333334, 0.013333333333333334, 0.013333333333333334, 0.013333333333333334, 0.013333333333333334, 0.013333333333333334, 0.013333333333333334, 0.013333333333333334, 0.013333333333333334, 0.013333333333333334, 0.013333333333333334, 0.013333333333333334, 0.02, 0.013333333333333334, 0.013333333333333334, 0.013333333333333334, 0.006666666666666667, 0.006666666666666667, 0.006666666666666667, 0.006666666666666667, 0.013333333333333334, 0.013333333333333334, 0.9466666666666667, 0.013333333333333334, 0.03333333333333333, 0.03333333333333333, 0.05333333333333334, 0.09333333333333334, 0.03333333333333333, 0.013333333333333334, 0.013333333333333334, 0.013333333333333334, 0.013333333333333334, 0.013333333333333334, 0.013333333333333334, 0.013333333333333334, 0.013333333333333334, 0.013333333333333334, 0.013333333333333334, 0.013333333333333334, 0.013333333333333334, 0.013333333333333334, 0.013333333333333334, 0.02, 0.013333333333333334, 0.013333333333333334, 0.013333333333333334, 0.013333333333333334, 0.013333333333333334, 0.013333333333333334, 0.013333333333333334, 0.013333333333333334, 0.02, 0.02, 0.02, 0.02, 0.02, 0.02, 0.02, 0.02666666666666667, 0.02666666666666667, 0.02666666666666667, 0.02666666666666667, 0.11333333333333333, 0.49333333333333335], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF1853.gap.json b/pfam_gap_rates/DUF1853.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..de5103cca1686f4ba62ec8f5bcdb361f766c788b
--- /dev/null
+++ b/pfam_gap_rates/DUF1853.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF1897.gap.json b/pfam_gap_rates/DUF1897.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a9e1b2a356ea6617b0e0a11f4ad80da9b007ccbd
--- /dev/null
+++ b/pfam_gap_rates/DUF1897.gap.json
@@ -0,0 +1 @@
+{"family": "DUF1897", "n_seqs": 176, "length": 36, "gap_rates": [0.8238636363636364, 0.5284090909090909, 0.20454545454545456, 0.13636363636363635, 0.05113636363636364, 0.022727272727272728, 0.022727272727272728, 0.017045454545454544, 0.017045454545454544, 0.017045454545454544, 0.011363636363636364, 0.005681818181818182, 0.005681818181818182, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.011363636363636364, 0.056818181818181816, 0.26136363636363635, 0.2784090909090909, 0.3409090909090909, 0.45454545454545453, 0.45454545454545453, 0.4602272727272727, 0.4602272727272727, 0.4715909090909091, 0.4715909090909091, 0.48295454545454547, 0.48295454545454547, 0.4943181818181818, 0.4943181818181818, 0.5170454545454546, 0.6022727272727273], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF1907.gap.json b/pfam_gap_rates/DUF1907.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c64026d7ef55f85f7f8cc89d79674a1321c93f37
--- /dev/null
+++ b/pfam_gap_rates/DUF1907.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF1918.gap.json b/pfam_gap_rates/DUF1918.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..08a039a2eaae2649079df8a0da6c5ebc8b0d8f27
--- /dev/null
+++ b/pfam_gap_rates/DUF1918.gap.json
@@ -0,0 +1 @@
+{"family": "DUF1918", "n_seqs": 113, "length": 58, "gap_rates": [0.1504424778761062, 0.09734513274336283, 0.09734513274336283, 0.09734513274336283, 0.07079646017699115, 0.07079646017699115, 0.05309734513274336, 0.05309734513274336, 0.05309734513274336, 0.017699115044247787, 0.017699115044247787, 0.017699115044247787, 0.017699115044247787, 0.02654867256637168, 0.02654867256637168, 0.017699115044247787, 0.008849557522123894, 0.008849557522123894, 0.008849557522123894, 0.008849557522123894, 0.008849557522123894, 0.008849557522123894, 0.008849557522123894, 0.0, 0.0, 0.0, 0.0, 0.0, 0.008849557522123894, 0.0, 0.0, 0.0, 0.0, 0.017699115044247787, 0.017699115044247787, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.5752212389380531, 0.0, 0.0, 0.0, 0.0, 0.0, 0.02654867256637168, 0.02654867256637168, 0.02654867256637168, 0.02654867256637168, 0.02654867256637168, 0.02654867256637168, 0.05309734513274336, 0.05309734513274336, 0.07079646017699115, 0.12389380530973451], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF1966.gap.json b/pfam_gap_rates/DUF1966.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f19aed58ae0b96b55c211b1fba33aa2f415a9404
--- /dev/null
+++ b/pfam_gap_rates/DUF1966.gap.json
@@ -0,0 +1 @@
+{"family": "DUF1966", "n_seqs": 163, "length": 94, "gap_rates": [0.7975460122699386, 0.48466257668711654, 0.4049079754601227, 0.3374233128834356, 0.19631901840490798, 0.1411042944785276, 0.09202453987730061, 0.06748466257668712, 0.04294478527607362, 0.04294478527607362, 0.04294478527607362, 0.04294478527607362, 0.03680981595092025, 0.03680981595092025, 0.03680981595092025, 0.5521472392638037, 0.5153374233128835, 0.49693251533742333, 0.49079754601226994, 0.012269938650306749, 0.006134969325153374, 0.006134969325153374, 0.006134969325153374, 0.006134969325153374, 0.0, 0.0, 0.0, 0.0, 0.0, 0.8588957055214724, 0.1165644171779141, 0.018404907975460124, 0.012269938650306749, 0.006134969325153374, 0.012269938650306749, 0.018404907975460124, 0.006134969325153374, 0.012269938650306749, 0.006134969325153374, 0.006134969325153374, 0.3803680981595092, 0.8957055214723927, 0.8711656441717791, 0.09815950920245399, 0.04294478527607362, 0.024539877300613498, 0.018404907975460124, 0.012269938650306749, 0.006134969325153374, 0.006134969325153374, 0.006134969325153374, 0.006134969325153374, 0.012269938650306749, 0.012269938650306749, 0.012269938650306749, 0.018404907975460124, 0.018404907975460124, 0.018404907975460124, 0.018404907975460124, 0.018404907975460124, 0.018404907975460124, 0.018404907975460124, 0.018404907975460124, 0.03680981595092025, 0.03067484662576687, 0.04294478527607362, 0.03067484662576687, 0.024539877300613498, 0.024539877300613498, 0.03067484662576687, 0.03680981595092025, 0.03680981595092025, 0.024539877300613498, 0.03067484662576687, 0.03680981595092025, 0.8404907975460123, 0.04294478527607362, 0.03067484662576687, 0.03067484662576687, 0.03067484662576687, 0.03680981595092025, 0.03680981595092025, 0.04294478527607362, 0.06134969325153374, 0.08588957055214724, 0.10429447852760736, 0.11042944785276074, 0.1901840490797546, 0.2147239263803681, 0.18404907975460122, 0.20245398773006135, 0.2392638036809816, 0.3006134969325153, 0.3006134969325153], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF1993.gap.json b/pfam_gap_rates/DUF1993.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..0c20a7d039b96a5577e2b1eeeb4a6bfd8f4b8e54
--- /dev/null
+++ b/pfam_gap_rates/DUF1993.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF1996.gap.json b/pfam_gap_rates/DUF1996.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..7e535c2bda33570b247f5c32a9e8b50436489c58
--- /dev/null
+++ b/pfam_gap_rates/DUF1996.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF2031.gap.json b/pfam_gap_rates/DUF2031.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..4195946994411afc356b56da179fd0e54f015e51
--- /dev/null
+++ b/pfam_gap_rates/DUF2031.gap.json
@@ -0,0 +1 @@
+{"family": "DUF2031", "n_seqs": 136, "length": 245, "gap_rates": [0.5367647058823529, 0.47794117647058826, 0.4338235294117647, 0.4117647058823529, 0.38235294117647056, 0.38235294117647056, 0.36764705882352944, 0.34558823529411764, 0.34558823529411764, 0.34558823529411764, 0.34558823529411764, 0.3382352941176471, 0.3382352941176471, 0.33088235294117646, 0.3235294117647059, 0.3235294117647059, 0.3235294117647059, 0.3235294117647059, 0.3382352941176471, 0.3235294117647059, 0.3235294117647059, 0.2867647058823529, 0.9117647058823529, 0.9338235294117647, 0.9411764705882353, 0.9485294117647058, 0.9485294117647058, 0.9485294117647058, 0.9411764705882353, 0.9117647058823529, 0.9117647058823529, 0.22794117647058823, 0.23529411764705882, 0.3088235294117647, 0.3088235294117647, 0.3088235294117647, 0.3088235294117647, 0.3161764705882353, 0.3382352941176471, 0.3088235294117647, 0.3088235294117647, 0.22058823529411764, 0.22058823529411764, 0.21323529411764705, 0.21323529411764705, 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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF2034.gap.json b/pfam_gap_rates/DUF2034.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a907b113e04e3e102807ffdabab6c540602f58e0
--- /dev/null
+++ b/pfam_gap_rates/DUF2034.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF2048.gap.json b/pfam_gap_rates/DUF2048.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..0f591376b4735edcb4ac6813b943f50856562810
--- /dev/null
+++ b/pfam_gap_rates/DUF2048.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF2052.gap.json b/pfam_gap_rates/DUF2052.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..937963165b99263915190512616505e23850feed
--- /dev/null
+++ b/pfam_gap_rates/DUF2052.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF2062.gap.json b/pfam_gap_rates/DUF2062.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..49bf4446469fae4c7553c04fe549f167585ed129
--- /dev/null
+++ b/pfam_gap_rates/DUF2062.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF2142.gap.json b/pfam_gap_rates/DUF2142.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..065e750a21d0575f285beef8ffab5b1a528ba867
--- /dev/null
+++ b/pfam_gap_rates/DUF2142.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF2149.gap.json b/pfam_gap_rates/DUF2149.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..8e448f74f524e0ac52d0385686b262e9f47f3b7f
--- /dev/null
+++ b/pfam_gap_rates/DUF2149.gap.json
@@ -0,0 +1 @@
+{"family": "DUF2149", "n_seqs": 113, "length": 102, "gap_rates": [0.4247787610619469, 0.1504424778761062, 0.04424778761061947, 0.008849557522123894, 0.008849557522123894, 0.008849557522123894, 0.008849557522123894, 0.008849557522123894, 0.008849557522123894, 0.008849557522123894, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.008849557522123894, 0.25663716814159293, 0.08849557522123894, 0.061946902654867256, 0.02654867256637168, 0.02654867256637168, 0.02654867256637168, 0.061946902654867256, 0.6283185840707964, 0.9292035398230089, 0.9380530973451328, 0.9380530973451328, 0.911504424778761, 0.2920353982300885, 0.10619469026548672, 0.08849557522123894, 0.08849557522123894, 0.08849557522123894, 0.04424778761061947, 0.035398230088495575, 0.02654867256637168, 0.035398230088495575, 0.04424778761061947, 0.035398230088495575, 0.061946902654867256, 0.23008849557522124, 0.09734513274336283, 0.07079646017699115, 0.05309734513274336, 0.035398230088495575, 0.22123893805309736, 0.19469026548672566, 0.07079646017699115, 0.061946902654867256, 0.9469026548672567, 0.04424778761061947, 0.02654867256637168, 0.035398230088495575, 0.04424778761061947, 0.02654867256637168, 0.061946902654867256, 0.7699115044247787, 0.8495575221238938, 0.7079646017699115, 0.02654867256637168, 0.02654867256637168, 0.02654867256637168, 0.02654867256637168, 0.035398230088495575, 0.12389380530973451, 0.07964601769911504, 0.017699115044247787, 0.017699115044247787, 0.017699115044247787, 0.02654867256637168, 0.017699115044247787, 0.831858407079646, 0.017699115044247787, 0.017699115044247787, 0.017699115044247787, 0.017699115044247787, 0.017699115044247787, 0.017699115044247787, 0.017699115044247787, 0.017699115044247787, 0.017699115044247787, 0.8141592920353983, 0.017699115044247787, 0.017699115044247787, 0.017699115044247787, 0.017699115044247787, 0.017699115044247787, 0.017699115044247787, 0.02654867256637168, 0.05309734513274336, 0.22123893805309736, 0.26548672566371684], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF2155.gap.json b/pfam_gap_rates/DUF2155.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d7149c8a53cd6aa1ecad2ba18e40b758f4eeea38
--- /dev/null
+++ b/pfam_gap_rates/DUF2155.gap.json
@@ -0,0 +1 @@
+{"family": "DUF2155", "n_seqs": 182, "length": 99, "gap_rates": [0.21428571428571427, 0.10989010989010989, 0.03296703296703297, 0.03296703296703297, 0.03296703296703297, 0.03296703296703297, 0.03296703296703297, 0.03296703296703297, 0.038461538461538464, 0.038461538461538464, 0.03296703296703297, 0.03296703296703297, 0.03296703296703297, 0.03296703296703297, 0.027472527472527472, 0.027472527472527472, 0.027472527472527472, 0.027472527472527472, 0.027472527472527472, 0.027472527472527472, 0.027472527472527472, 0.027472527472527472, 0.027472527472527472, 0.027472527472527472, 0.027472527472527472, 0.027472527472527472, 0.027472527472527472, 0.027472527472527472, 0.027472527472527472, 0.027472527472527472, 0.027472527472527472, 0.027472527472527472, 0.027472527472527472, 0.027472527472527472, 0.027472527472527472, 0.027472527472527472, 0.027472527472527472, 0.027472527472527472, 0.027472527472527472, 0.016483516483516484, 0.016483516483516484, 0.016483516483516484, 0.8956043956043956, 0.016483516483516484, 0.027472527472527472, 0.02197802197802198, 0.016483516483516484, 0.016483516483516484, 0.016483516483516484, 0.016483516483516484, 0.016483516483516484, 0.016483516483516484, 0.016483516483516484, 0.016483516483516484, 0.016483516483516484, 0.016483516483516484, 0.016483516483516484, 0.016483516483516484, 0.01098901098901099, 0.07142857142857142, 0.08241758241758242, 0.13186813186813187, 0.3901098901098901, 0.3516483516483517, 0.24175824175824176, 0.8791208791208791, 0.9010989010989011, 0.9395604395604396, 0.9175824175824175, 0.8791208791208791, 0.8626373626373627, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.005494505494505495, 0.005494505494505495, 0.005494505494505495, 0.01098901098901099, 0.01098901098901099, 0.01098901098901099, 0.016483516483516484, 0.016483516483516484, 0.016483516483516484, 0.016483516483516484, 0.016483516483516484, 0.016483516483516484, 0.016483516483516484, 0.016483516483516484, 0.016483516483516484, 0.02197802197802198, 0.06043956043956044, 0.07142857142857142], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF2205.gap.json b/pfam_gap_rates/DUF2205.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..38a8df65f2837f5ceb1e245292d3fecb3cb50cee
--- /dev/null
+++ b/pfam_gap_rates/DUF2205.gap.json
@@ -0,0 +1 @@
+{"family": "DUF2205", "n_seqs": 192, "length": 78, "gap_rates": [0.6875, 0.6354166666666666, 0.609375, 0.6041666666666666, 0.5989583333333334, 0.5729166666666666, 0.5208333333333334, 0.4375, 0.4010416666666667, 0.3958333333333333, 0.3125, 0.2864583333333333, 0.21875, 0.203125, 0.203125, 0.18229166666666666, 0.06770833333333333, 0.0625, 0.0625, 0.0625, 0.0625, 0.0625, 0.06770833333333333, 0.052083333333333336, 0.041666666666666664, 0.036458333333333336, 0.03125, 0.020833333333333332, 0.020833333333333332, 0.020833333333333332, 0.020833333333333332, 0.020833333333333332, 0.010416666666666666, 0.010416666666666666, 0.010416666666666666, 0.010416666666666666, 0.010416666666666666, 0.005208333333333333, 0.0, 0.0, 0.0, 0.0, 0.005208333333333333, 0.005208333333333333, 0.005208333333333333, 0.005208333333333333, 0.005208333333333333, 0.005208333333333333, 0.005208333333333333, 0.005208333333333333, 0.005208333333333333, 0.005208333333333333, 0.005208333333333333, 0.005208333333333333, 0.005208333333333333, 0.005208333333333333, 0.005208333333333333, 0.005208333333333333, 0.005208333333333333, 0.005208333333333333, 0.010416666666666666, 0.010416666666666666, 0.010416666666666666, 0.8854166666666666, 0.890625, 0.8541666666666666, 0.026041666666666668, 0.046875, 0.06770833333333333, 0.125, 0.15104166666666666, 0.203125, 0.22395833333333334, 0.23958333333333334, 0.265625, 0.2864583333333333, 0.4114583333333333, 0.8697916666666666], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF223.gap.json b/pfam_gap_rates/DUF223.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b27d1a37da8388042c163a768350b3ea05723ccb
--- /dev/null
+++ b/pfam_gap_rates/DUF223.gap.json
@@ -0,0 +1 @@
+{"family": "DUF223", "n_seqs": 274, "length": 97, "gap_rates": [0.6131386861313869, 0.28832116788321166, 0.25547445255474455, 0.23722627737226276, 0.22627737226277372, 0.21532846715328466, 0.1897810218978102, 0.14963503649635038, 0.12773722627737227, 0.11678832116788321, 0.10948905109489052, 0.10583941605839416, 0.10583941605839416, 0.10218978102189781, 0.10218978102189781, 0.09854014598540146, 0.09124087591240876, 0.08394160583941605, 0.08394160583941605, 0.08394160583941605, 0.08029197080291971, 0.08394160583941605, 0.08029197080291971, 0.08029197080291971, 0.07664233576642336, 0.072992700729927, 0.06934306569343066, 0.06569343065693431, 0.051094890510948905, 0.04744525547445255, 0.04744525547445255, 0.04744525547445255, 0.01824817518248175, 0.010948905109489052, 0.010948905109489052, 0.0072992700729927005, 0.010948905109489052, 0.0036496350364963502, 0.0036496350364963502, 0.0036496350364963502, 0.0072992700729927005, 0.0036496350364963502, 0.0036496350364963502, 0.010948905109489052, 0.0036496350364963502, 0.0072992700729927005, 0.010948905109489052, 0.0072992700729927005, 0.010948905109489052, 0.010948905109489052, 0.010948905109489052, 0.010948905109489052, 0.010948905109489052, 0.025547445255474453, 0.029197080291970802, 0.029197080291970802, 0.032846715328467155, 0.0364963503649635, 0.0364963503649635, 0.043795620437956206, 0.051094890510948905, 0.05474452554744526, 0.05474452554744526, 0.05474452554744526, 0.06204379562043796, 0.06204379562043796, 0.08029197080291971, 0.09124087591240876, 0.12773722627737227, 0.14963503649635038, 0.17153284671532848, 0.18248175182481752, 0.19708029197080293, 0.21532846715328466, 0.21532846715328466, 0.8613138686131386, 0.2591240875912409, 0.21897810218978103, 0.22262773722627738, 0.22627737226277372, 0.22627737226277372, 0.22992700729927007, 0.2664233576642336, 0.28102189781021897, 0.2846715328467153, 0.3175182481751825, 0.33211678832116787, 0.38321167883211676, 0.4233576642335766, 0.5766423357664233, 0.6094890510948905, 0.635036496350365, 0.656934306569343, 0.7262773722627737, 0.7773722627737226, 0.7956204379562044, 0.8138686131386861], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF2232.gap.json b/pfam_gap_rates/DUF2232.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..4e873df04d756de411874ec21a514f7c1bf2b722
--- /dev/null
+++ b/pfam_gap_rates/DUF2232.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF2235.gap.json b/pfam_gap_rates/DUF2235.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..89bc7357daf47b02d45848220367d73c59ae9f96
--- /dev/null
+++ b/pfam_gap_rates/DUF2235.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF2256.gap.json b/pfam_gap_rates/DUF2256.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..834967eb5391a6f1b5a4ad2cffe8ecf11fac42ca
--- /dev/null
+++ b/pfam_gap_rates/DUF2256.gap.json
@@ -0,0 +1 @@
+{"family": "DUF2256", "n_seqs": 181, "length": 40, "gap_rates": [0.3867403314917127, 0.19337016574585636, 0.17679558011049723, 0.143646408839779, 0.13259668508287292, 0.12154696132596685, 0.049723756906077346, 0.03867403314917127, 0.011049723756906077, 0.011049723756906077, 0.011049723756906077, 0.0055248618784530384, 0.0055248618784530384, 0.0055248618784530384, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0055248618784530384, 0.0, 0.0, 0.0, 0.0, 0.0055248618784530384, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.049723756906077346, 0.6464088397790055], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF2293.gap.json b/pfam_gap_rates/DUF2293.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d67f0e90194b1f0a0b08aefea7ce042c93bcf479
--- /dev/null
+++ b/pfam_gap_rates/DUF2293.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF2309.gap.json b/pfam_gap_rates/DUF2309.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..34979e5aa68970a4516b8ecb0226f754fdce476b
--- /dev/null
+++ b/pfam_gap_rates/DUF2309.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF2325.gap.json b/pfam_gap_rates/DUF2325.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f763687c59b03632767f30456dbb9159603c7a4c
--- /dev/null
+++ b/pfam_gap_rates/DUF2325.gap.json
@@ -0,0 +1 @@
+{"family": "DUF2325", "n_seqs": 364, "length": 97, "gap_rates": [0.3873626373626374, 0.0989010989010989, 0.06318681318681318, 0.06043956043956044, 0.054945054945054944, 0.04945054945054945, 0.046703296703296704, 0.054945054945054944, 0.046703296703296704, 0.37362637362637363, 0.3489010989010989, 0.046703296703296704, 0.03571428571428571, 0.03296703296703297, 0.03021978021978022, 0.03021978021978022, 0.03021978021978022, 0.03021978021978022, 0.027472527472527472, 0.027472527472527472, 0.027472527472527472, 0.027472527472527472, 0.027472527472527472, 0.027472527472527472, 0.7197802197802198, 0.027472527472527472, 0.027472527472527472, 0.024725274725274724, 0.024725274725274724, 0.024725274725274724, 0.024725274725274724, 0.024725274725274724, 0.024725274725274724, 0.024725274725274724, 0.024725274725274724, 0.46703296703296704, 0.44505494505494503, 0.41208791208791207, 0.3956043956043956, 0.945054945054945, 0.7417582417582418, 0.01098901098901099, 0.013736263736263736, 0.013736263736263736, 0.016483516483516484, 0.03021978021978022, 0.02197802197802198, 0.22252747252747251, 0.20054945054945056, 0.19505494505494506, 0.0027472527472527475, 0.0027472527472527475, 0.0027472527472527475, 0.005494505494505495, 0.005494505494505495, 0.0027472527472527475, 0.0027472527472527475, 0.0027472527472527475, 0.0027472527472527475, 0.0027472527472527475, 0.0027472527472527475, 0.0027472527472527475, 0.0027472527472527475, 0.0027472527472527475, 0.01098901098901099, 0.0027472527472527475, 0.0027472527472527475, 0.0027472527472527475, 0.0027472527472527475, 0.0027472527472527475, 0.0027472527472527475, 0.005494505494505495, 0.013736263736263736, 0.038461538461538464, 0.016483516483516484, 0.016483516483516484, 0.01098901098901099, 0.008241758241758242, 0.008241758241758242, 0.008241758241758242, 0.008241758241758242, 0.008241758241758242, 0.29395604395604397, 0.03296703296703297, 0.03296703296703297, 0.03571428571428571, 0.04395604395604396, 0.046703296703296704, 0.054945054945054944, 0.06593406593406594, 0.07692307692307693, 0.08241758241758242, 0.1043956043956044, 0.11813186813186813, 0.22252747252747251, 0.4175824175824176, 0.9230769230769231], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF2360.gap.json b/pfam_gap_rates/DUF2360.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f190f35ad1bbe8c647a2425630d5c7c9fa8bd805
--- /dev/null
+++ b/pfam_gap_rates/DUF2360.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF2398.gap.json b/pfam_gap_rates/DUF2398.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..91987235d354281e3bac4929fe21cc6df20658cc
--- /dev/null
+++ b/pfam_gap_rates/DUF2398.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF2407_C.gap.json b/pfam_gap_rates/DUF2407_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..3dbb4efed3f15a303d0c9ae21d0f8d11ccfac1d0
--- /dev/null
+++ b/pfam_gap_rates/DUF2407_C.gap.json
@@ -0,0 +1 @@
+{"family": "DUF2407_C", "n_seqs": 145, "length": 171, "gap_rates": [0.23448275862068965, 0.05517241379310345, 0.04827586206896552, 0.04827586206896552, 0.04827586206896552, 0.041379310344827586, 0.041379310344827586, 0.041379310344827586, 0.041379310344827586, 0.07586206896551724, 0.041379310344827586, 0.034482758620689655, 0.034482758620689655, 0.034482758620689655, 0.034482758620689655, 0.034482758620689655, 0.034482758620689655, 0.034482758620689655, 0.034482758620689655, 0.034482758620689655, 0.034482758620689655, 0.034482758620689655, 0.034482758620689655, 0.034482758620689655, 0.034482758620689655, 0.034482758620689655, 0.041379310344827586, 0.034482758620689655, 0.2482758620689655, 0.21379310344827587, 0.20689655172413793, 0.19310344827586207, 0.18620689655172415, 0.25517241379310346, 0.25517241379310346, 0.23448275862068965, 0.22758620689655173, 0.16551724137931034, 0.9448275862068966, 0.9241379310344827, 0.15172413793103448, 0.7379310344827587, 0.6344827586206897, 0.5793103448275863, 0.5172413793103449, 0.46206896551724136, 0.4206896551724138, 0.896551724137931, 0.8896551724137931, 0.034482758620689655, 0.041379310344827586, 0.041379310344827586, 0.041379310344827586, 0.04827586206896552, 0.05517241379310345, 0.041379310344827586, 0.041379310344827586, 0.041379310344827586, 0.041379310344827586, 0.041379310344827586, 0.041379310344827586, 0.041379310344827586, 0.041379310344827586, 0.041379310344827586, 0.04827586206896552, 0.2206896551724138, 0.2896551724137931, 0.3724137931034483, 0.41379310344827586, 0.4206896551724138, 0.5172413793103449, 0.8827586206896552, 0.8, 0.5241379310344828, 0.5379310344827586, 0.4689655172413793, 0.4068965517241379, 0.3586206896551724, 0.3103448275862069, 0.3724137931034483, 0.35172413793103446, 0.45517241379310347, 0.5103448275862069, 0.5448275862068965, 0.35172413793103446, 0.6620689655172414, 0.7172413793103448, 0.7517241379310344, 0.8344827586206897, 0.8551724137931035, 0.896551724137931, 0.9241379310344827, 0.9310344827586207, 0.9310344827586207, 0.9103448275862069, 0.8896551724137931, 0.8413793103448276, 0.8, 0.7379310344827587, 0.6896551724137931, 0.6551724137931034, 0.2896551724137931, 0.47586206896551725, 0.38620689655172413, 0.21379310344827587, 0.05517241379310345, 0.04827586206896552, 0.05517241379310345, 0.05517241379310345, 0.04827586206896552, 0.04827586206896552, 0.04827586206896552, 0.041379310344827586, 0.041379310344827586, 0.041379310344827586, 0.041379310344827586, 0.041379310344827586, 0.041379310344827586, 0.041379310344827586, 0.041379310344827586, 0.041379310344827586, 0.041379310344827586, 0.041379310344827586, 0.041379310344827586, 0.041379310344827586, 0.041379310344827586, 0.041379310344827586, 0.04827586206896552, 0.05517241379310345, 0.23448275862068965, 0.08275862068965517, 0.0896551724137931, 0.12413793103448276, 0.13793103448275862, 0.15172413793103448, 0.1724137931034483, 0.21379310344827587, 0.903448275862069, 0.9310344827586207, 0.9379310344827586, 0.9448275862068966, 0.9448275862068966, 0.9448275862068966, 0.9379310344827586, 0.9310344827586207, 0.8896551724137931, 0.35172413793103446, 0.2827586206896552, 0.1793103448275862, 0.1793103448275862, 0.1793103448275862, 0.18620689655172415, 0.19310344827586207, 0.19310344827586207, 0.19310344827586207, 0.19310344827586207, 0.19310344827586207, 0.19310344827586207, 0.19310344827586207, 0.2, 0.2, 0.2, 0.2, 0.2, 0.2, 0.2, 0.20689655172413793, 0.21379310344827587, 0.22758620689655173, 0.2896551724137931, 0.47586206896551725], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF2428.gap.json b/pfam_gap_rates/DUF2428.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b144cf156a238edff39d7a6813ce5d51cddbf216
--- /dev/null
+++ b/pfam_gap_rates/DUF2428.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF2475.gap.json b/pfam_gap_rates/DUF2475.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..89e06c4a0cf3e95536fb15ccee680d32f889986e
--- /dev/null
+++ b/pfam_gap_rates/DUF2475.gap.json
@@ -0,0 +1 @@
+{"family": "DUF2475", "n_seqs": 180, "length": 67, "gap_rates": [0.6888888888888889, 0.5888888888888889, 0.3388888888888889, 0.1111111111111111, 0.08333333333333333, 0.05555555555555555, 0.03333333333333333, 0.005555555555555556, 0.005555555555555556, 0.005555555555555556, 0.005555555555555556, 0.005555555555555556, 0.005555555555555556, 0.011111111111111112, 0.011111111111111112, 0.011111111111111112, 0.005555555555555556, 0.005555555555555556, 0.005555555555555556, 0.005555555555555556, 0.005555555555555556, 0.005555555555555556, 0.005555555555555556, 0.005555555555555556, 0.005555555555555556, 0.005555555555555556, 0.011111111111111112, 0.06666666666666667, 0.16111111111111112, 0.20555555555555555, 0.2222222222222222, 0.2833333333333333, 0.3, 0.6333333333333333, 0.6666666666666666, 0.6833333333333333, 0.6, 0.6444444444444445, 0.6666666666666666, 0.6666666666666666, 0.6777777777777778, 0.6888888888888889, 0.6888888888888889, 0.7, 0.7111111111111111, 0.7333333333333333, 0.7388888888888889, 0.7944444444444444, 0.7777777777777778, 0.7777777777777778, 0.7777777777777778, 0.7833333333333333, 0.7611111111111111, 0.7722222222222223, 0.7777777777777778, 0.8111111111111111, 0.7888888888888889, 0.7777777777777778, 0.7833333333333333, 0.7944444444444444, 0.8055555555555556, 0.8277777777777777, 0.8277777777777777, 0.8333333333333334, 0.8388888888888889, 0.8555555555555555, 0.8777777777777778], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF2550.gap.json b/pfam_gap_rates/DUF2550.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a7c04a338c193762c5026d31e8879014ae22cae4
--- /dev/null
+++ b/pfam_gap_rates/DUF2550.gap.json
@@ -0,0 +1 @@
+{"family": "DUF2550", "n_seqs": 172, "length": 146, "gap_rates": [0.436046511627907, 0.14534883720930233, 0.08139534883720931, 0.05232558139534884, 0.03488372093023256, 0.03488372093023256, 0.03488372093023256, 0.03488372093023256, 0.03488372093023256, 0.03488372093023256, 0.029069767441860465, 0.029069767441860465, 0.029069767441860465, 0.029069767441860465, 0.029069767441860465, 0.029069767441860465, 0.029069767441860465, 0.029069767441860465, 0.029069767441860465, 0.029069767441860465, 0.029069767441860465, 0.09302325581395349, 0.029069767441860465, 0.25, 0.029069767441860465, 0.029069767441860465, 0.029069767441860465, 0.029069767441860465, 0.029069767441860465, 0.05813953488372093, 0.09883720930232558, 0.29069767441860467, 0.3546511627906977, 0.8546511627906976, 0.872093023255814, 0.936046511627907, 0.9069767441860465, 0.8604651162790697, 0.8546511627906976, 0.27906976744186046, 0.13372093023255813, 0.08139534883720931, 0.040697674418604654, 0.03488372093023256, 0.029069767441860465, 0.9244186046511628, 0.029069767441860465, 0.029069767441860465, 0.023255813953488372, 0.023255813953488372, 0.023255813953488372, 0.023255813953488372, 0.023255813953488372, 0.023255813953488372, 0.023255813953488372, 0.023255813953488372, 0.023255813953488372, 0.023255813953488372, 0.023255813953488372, 0.023255813953488372, 0.023255813953488372, 0.023255813953488372, 0.023255813953488372, 0.023255813953488372, 0.023255813953488372, 0.023255813953488372, 0.023255813953488372, 0.023255813953488372, 0.029069767441860465, 0.023255813953488372, 0.01744186046511628, 0.01744186046511628, 0.01744186046511628, 0.01744186046511628, 0.011627906976744186, 0.011627906976744186, 0.011627906976744186, 0.011627906976744186, 0.011627906976744186, 0.011627906976744186, 0.011627906976744186, 0.011627906976744186, 0.011627906976744186, 0.01744186046511628, 0.01744186046511628, 0.03488372093023256, 0.046511627906976744, 0.046511627906976744, 0.03488372093023256, 0.040697674418604654, 0.046511627906976744, 0.040697674418604654, 0.05813953488372093, 0.0872093023255814, 0.09302325581395349, 0.12790697674418605, 0.20930232558139536, 0.19767441860465115, 0.13372093023255813, 0.0872093023255814, 0.046511627906976744, 0.029069767441860465, 0.01744186046511628, 0.011627906976744186, 0.005813953488372093, 0.9476744186046512, 0.9476744186046512, 0.9476744186046512, 0.9476744186046512, 0.005813953488372093, 0.005813953488372093, 0.936046511627907, 0.9418604651162791, 0.9418604651162791, 0.936046511627907, 0.005813953488372093, 0.005813953488372093, 0.005813953488372093, 0.005813953488372093, 0.8953488372093024, 0.9127906976744186, 0.9069767441860465, 0.8895348837209303, 0.005813953488372093, 0.005813953488372093, 0.005813953488372093, 0.005813953488372093, 0.005813953488372093, 0.005813953488372093, 0.005813953488372093, 0.005813953488372093, 0.005813953488372093, 0.005813953488372093, 0.005813953488372093, 0.005813953488372093, 0.005813953488372093, 0.005813953488372093, 0.005813953488372093, 0.005813953488372093, 0.005813953488372093, 0.005813953488372093, 0.005813953488372093, 0.005813953488372093, 0.011627906976744186, 0.06976744186046512, 0.4011627906976744], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF2628.gap.json b/pfam_gap_rates/DUF2628.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..54a8ede88aa6b6b70926618bc15f3134e161b235
--- /dev/null
+++ b/pfam_gap_rates/DUF2628.gap.json
@@ -0,0 +1 @@
+{"family": "DUF2628", "n_seqs": 185, "length": 148, "gap_rates": [0.9081081081081082, 0.8594594594594595, 0.8324324324324325, 0.7189189189189189, 0.9297297297297298, 0.9405405405405406, 0.9297297297297298, 0.918918918918919, 0.5297297297297298, 0.4648648648648649, 0.4, 0.3621621621621622, 0.3027027027027027, 0.2810810810810811, 0.2756756756756757, 0.25405405405405407, 0.23783783783783785, 0.8540540540540541, 0.8864864864864865, 0.9027027027027027, 0.9135135135135135, 0.9243243243243243, 0.9243243243243243, 0.9297297297297298, 0.9297297297297298, 0.9243243243243243, 0.9243243243243243, 0.9135135135135135, 0.9135135135135135, 0.8972972972972973, 0.8594594594594595, 0.8162162162162162, 0.5567567567567567, 0.42702702702702705, 0.34594594594594597, 0.34054054054054056, 0.2864864864864865, 0.010810810810810811, 0.010810810810810811, 0.010810810810810811, 0.005405405405405406, 0.005405405405405406, 0.005405405405405406, 0.005405405405405406, 0.005405405405405406, 0.005405405405405406, 0.005405405405405406, 0.005405405405405406, 0.005405405405405406, 0.005405405405405406, 0.005405405405405406, 0.005405405405405406, 0.005405405405405406, 0.005405405405405406, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.005405405405405406, 0.9459459459459459, 0.010810810810810811, 0.021621621621621623, 0.03783783783783784, 0.03783783783783784, 0.03783783783783784, 0.04864864864864865, 0.043243243243243246, 0.043243243243243246, 0.12432432432432433, 0.12972972972972974, 0.10810810810810811, 0.0972972972972973, 0.6702702702702703, 0.7189189189189189, 0.8054054054054054, 0.8378378378378378, 0.8540540540540541, 0.8756756756756757, 0.8864864864864865, 0.8972972972972973, 0.9081081081081082, 0.9135135135135135, 0.9243243243243243, 0.9351351351351351, 0.9351351351351351, 0.9405405405405406, 0.9459459459459459, 0.9459459459459459, 0.9459459459459459, 0.9459459459459459, 0.9459459459459459, 0.9405405405405406, 0.9351351351351351, 0.9243243243243243, 0.9243243243243243, 0.9135135135135135, 0.9027027027027027, 0.8864864864864865, 0.8864864864864865, 0.8756756756756757, 0.8540540540540541, 0.8162162162162162, 0.772972972972973, 0.6918918918918919, 0.6378378378378379, 0.10270270270270271, 0.15135135135135136, 0.14594594594594595, 0.14594594594594595, 0.15135135135135136, 0.14054054054054055, 0.23783783783783785, 0.22162162162162163, 0.2, 0.8756756756756757, 0.8972972972972973, 0.9459459459459459, 0.9243243243243243, 0.8810810810810811, 0.8540540540540541, 0.10270270270270271, 0.10270270270270271, 0.0918918918918919, 0.08648648648648649, 0.0972972972972973, 0.10270270270270271, 0.10270270270270271, 0.10270270270270271, 0.10810810810810811, 0.11351351351351352, 0.11891891891891893, 0.12432432432432433, 0.14054054054054055, 0.14054054054054055, 0.14594594594594595, 0.15675675675675677, 0.17297297297297298, 0.2, 0.23243243243243245, 0.2756756756756757, 0.3837837837837838, 0.6054054054054054, 0.6864864864864865], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF2788.gap.json b/pfam_gap_rates/DUF2788.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..470d43bd05f66c2c511d24dc5889c1cd7d69c5a7
--- /dev/null
+++ b/pfam_gap_rates/DUF2788.gap.json
@@ -0,0 +1 @@
+{"family": "DUF2788", "n_seqs": 108, "length": 51, "gap_rates": [0.3425925925925926, 0.037037037037037035, 0.009259259259259259, 0.009259259259259259, 0.009259259259259259, 0.009259259259259259, 0.009259259259259259, 0.009259259259259259, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.009259259259259259, 0.009259259259259259, 0.009259259259259259, 0.009259259259259259, 0.009259259259259259, 0.009259259259259259, 0.009259259259259259, 0.009259259259259259, 0.009259259259259259, 0.009259259259259259, 0.009259259259259259, 0.009259259259259259, 0.009259259259259259, 0.009259259259259259, 0.009259259259259259, 0.009259259259259259, 0.009259259259259259, 0.009259259259259259, 0.009259259259259259, 0.009259259259259259, 0.009259259259259259, 0.009259259259259259, 0.009259259259259259, 0.027777777777777776, 0.06481481481481481, 0.08333333333333333, 0.49074074074074076], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF2841.gap.json b/pfam_gap_rates/DUF2841.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..73aa73b593696c07a5dbd74daf38005af778b755
--- /dev/null
+++ b/pfam_gap_rates/DUF2841.gap.json
@@ -0,0 +1 @@
+{"family": "DUF2841", "n_seqs": 110, "length": 167, "gap_rates": [0.7909090909090909, 0.2727272727272727, 0.19090909090909092, 0.12727272727272726, 0.10909090909090909, 0.08181818181818182, 0.03636363636363636, 0.01818181818181818, 0.01818181818181818, 0.01818181818181818, 0.01818181818181818, 0.01818181818181818, 0.01818181818181818, 0.01818181818181818, 0.01818181818181818, 0.01818181818181818, 0.01818181818181818, 0.01818181818181818, 0.00909090909090909, 0.00909090909090909, 0.00909090909090909, 0.00909090909090909, 0.00909090909090909, 0.00909090909090909, 0.00909090909090909, 0.00909090909090909, 0.00909090909090909, 0.00909090909090909, 0.00909090909090909, 0.00909090909090909, 0.00909090909090909, 0.00909090909090909, 0.00909090909090909, 0.00909090909090909, 0.00909090909090909, 0.00909090909090909, 0.00909090909090909, 0.00909090909090909, 0.00909090909090909, 0.00909090909090909, 0.00909090909090909, 0.00909090909090909, 0.00909090909090909, 0.00909090909090909, 0.01818181818181818, 0.01818181818181818, 0.00909090909090909, 0.00909090909090909, 0.6727272727272727, 0.6818181818181818, 0.6909090909090909, 0.7272727272727273, 0.7454545454545455, 0.7909090909090909, 0.9090909090909091, 0.8909090909090909, 0.7909090909090909, 0.7272727272727273, 0.7272727272727273, 0.6818181818181818, 0.6727272727272727, 0.6636363636363637, 0.01818181818181818, 0.03636363636363636, 0.00909090909090909, 0.0, 0.9454545454545454, 0.9454545454545454, 0.9454545454545454, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.6454545454545455, 0.6909090909090909, 0.7545454545454545, 0.7818181818181819, 0.7636363636363637, 0.6909090909090909, 0.6909090909090909, 0.6363636363636364, 0.0, 0.0, 0.00909090909090909, 0.00909090909090909, 0.00909090909090909, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.00909090909090909, 0.00909090909090909, 0.00909090909090909, 0.01818181818181818, 0.01818181818181818, 0.01818181818181818, 0.01818181818181818, 0.01818181818181818, 0.01818181818181818, 0.01818181818181818, 0.01818181818181818, 0.02727272727272727, 0.02727272727272727, 0.20909090909090908, 0.24545454545454545, 0.2727272727272727, 0.37272727272727274, 0.5818181818181818, 0.5909090909090909, 0.6181818181818182, 0.6363636363636364, 0.6727272727272727, 0.9454545454545454, 0.6636363636363637, 0.6272727272727273, 0.6, 0.5909090909090909, 0.5818181818181818, 0.1, 0.09090909090909091, 0.05454545454545454, 0.05454545454545454, 0.05454545454545454, 0.05454545454545454, 0.05454545454545454, 0.05454545454545454, 0.05454545454545454, 0.05454545454545454, 0.05454545454545454, 0.06363636363636363, 0.05454545454545454, 0.045454545454545456, 0.6363636363636364, 0.6363636363636364, 0.7727272727272727, 0.7909090909090909, 0.6454545454545455, 0.6363636363636364, 0.6272727272727273, 0.2818181818181818, 0.15454545454545454, 0.10909090909090909, 0.09090909090909091, 0.07272727272727272, 0.07272727272727272, 0.07272727272727272, 0.07272727272727272, 0.07272727272727272, 0.07272727272727272, 0.07272727272727272, 0.07272727272727272, 0.07272727272727272, 0.07272727272727272, 0.07272727272727272, 0.07272727272727272, 0.07272727272727272, 0.07272727272727272, 0.08181818181818182, 0.12727272727272726, 0.2545454545454545, 0.9454545454545454], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF2935.gap.json b/pfam_gap_rates/DUF2935.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..4ab468de43196434300ce23b789caf48aa5912da
--- /dev/null
+++ b/pfam_gap_rates/DUF2935.gap.json
@@ -0,0 +1 @@
+{"family": "DUF2935", "n_seqs": 429, "length": 169, "gap_rates": [0.9487179487179487, 0.6013986013986014, 0.3006993006993007, 0.1958041958041958, 0.10256410256410256, 0.06060606060606061, 0.053613053613053616, 0.037296037296037296, 0.037296037296037296, 0.039627039627039624, 0.037296037296037296, 0.03496503496503497, 0.03263403263403263, 0.02097902097902098, 0.02097902097902098, 0.02097902097902098, 0.02097902097902098, 0.02097902097902098, 0.018648018648018648, 0.018648018648018648, 0.016317016317016316, 0.016317016317016316, 0.016317016317016316, 0.016317016317016316, 0.016317016317016316, 0.016317016317016316, 0.016317016317016316, 0.016317016317016316, 0.016317016317016316, 0.018648018648018648, 0.018648018648018648, 0.016317016317016316, 0.018648018648018648, 0.018648018648018648, 0.018648018648018648, 0.018648018648018648, 0.018648018648018648, 0.018648018648018648, 0.02097902097902098, 0.02097902097902098, 0.02097902097902098, 0.02097902097902098, 0.02097902097902098, 0.02097902097902098, 0.02097902097902098, 0.02097902097902098, 0.02097902097902098, 0.02097902097902098, 0.02564102564102564, 0.027972027972027972, 0.16083916083916083, 0.1655011655011655, 0.35664335664335667, 0.44988344988344986, 0.46853146853146854, 0.46853146853146854, 0.5244755244755245, 0.7389277389277389, 0.7668997668997669, 0.7832167832167832, 0.8484848484848485, 0.8508158508158508, 0.8554778554778555, 0.8554778554778555, 0.8554778554778555, 0.8578088578088578, 0.8601398601398601, 0.8601398601398601, 0.8601398601398601, 0.8601398601398601, 0.8601398601398601, 0.8601398601398601, 0.8601398601398601, 0.8601398601398601, 0.8601398601398601, 0.8601398601398601, 0.8601398601398601, 0.8601398601398601, 0.8601398601398601, 0.8601398601398601, 0.8648018648018648, 0.8717948717948718, 0.8624708624708625, 0.8601398601398601, 0.8601398601398601, 0.8601398601398601, 0.8601398601398601, 0.8601398601398601, 0.8601398601398601, 0.8601398601398601, 0.8601398601398601, 0.8601398601398601, 0.8601398601398601, 0.8601398601398601, 0.8601398601398601, 0.8601398601398601, 0.8578088578088578, 0.8578088578088578, 0.8554778554778555, 0.8554778554778555, 0.8531468531468531, 0.8508158508158508, 0.8461538461538461, 0.7668997668997669, 0.7668997668997669, 0.34265734265734266, 0.2937062937062937, 0.2564102564102564, 0.13986013986013987, 0.09090909090909091, 0.055944055944055944, 0.055944055944055944, 0.04428904428904429, 0.04195804195804196, 0.039627039627039624, 0.037296037296037296, 0.037296037296037296, 0.037296037296037296, 0.037296037296037296, 0.037296037296037296, 0.03496503496503497, 0.03496503496503497, 0.03496503496503497, 0.03496503496503497, 0.03496503496503497, 0.03496503496503497, 0.03496503496503497, 0.030303030303030304, 0.030303030303030304, 0.030303030303030304, 0.030303030303030304, 0.030303030303030304, 0.030303030303030304, 0.030303030303030304, 0.030303030303030304, 0.030303030303030304, 0.030303030303030304, 0.030303030303030304, 0.030303030303030304, 0.030303030303030304, 0.030303030303030304, 0.030303030303030304, 0.039627039627039624, 0.039627039627039624, 0.03496503496503497, 0.037296037296037296, 0.10023310023310024, 0.030303030303030304, 0.030303030303030304, 0.030303030303030304, 0.030303030303030304, 0.030303030303030304, 0.030303030303030304, 0.030303030303030304, 0.030303030303030304, 0.030303030303030304, 0.030303030303030304, 0.030303030303030304, 0.030303030303030304, 0.030303030303030304, 0.030303030303030304, 0.030303030303030304, 0.039627039627039624, 0.04895104895104895, 0.04895104895104895, 0.05128205128205128, 0.06060606060606061, 0.12354312354312354, 0.7692307692307693], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF2970.gap.json b/pfam_gap_rates/DUF2970.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..965fd5cf2376ee8873153b7e127161fc108ddc70
--- /dev/null
+++ b/pfam_gap_rates/DUF2970.gap.json
@@ -0,0 +1 @@
+{"family": "DUF2970", "n_seqs": 166, "length": 56, "gap_rates": [0.43373493975903615, 0.1746987951807229, 0.08433734939759036, 0.04216867469879518, 0.030120481927710843, 0.030120481927710843, 0.024096385542168676, 0.024096385542168676, 0.018072289156626505, 0.018072289156626505, 0.018072289156626505, 0.012048192771084338, 0.006024096385542169, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.006024096385542169, 0.012048192771084338, 0.006024096385542169, 0.0, 0.04216867469879518, 0.006024096385542169, 0.006024096385542169, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.006024096385542169, 0.0, 0.0, 0.0, 0.006024096385542169, 0.006024096385542169, 0.018072289156626505, 0.06626506024096386, 0.3192771084337349], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF3047.gap.json b/pfam_gap_rates/DUF3047.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..04727003f5e86e14228bef1dd7fd8662e88422ff
--- /dev/null
+++ b/pfam_gap_rates/DUF3047.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF3050.gap.json b/pfam_gap_rates/DUF3050.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e44d55d1cc7accdc9d9b2679741dfa3797743c50
--- /dev/null
+++ b/pfam_gap_rates/DUF3050.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF3074.gap.json b/pfam_gap_rates/DUF3074.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e1baed6025d815024aa1a42e0f2b48c1563d58ff
--- /dev/null
+++ b/pfam_gap_rates/DUF3074.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF3078.gap.json b/pfam_gap_rates/DUF3078.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..87a16c8363450721aaf84517f5ef9dab1b19aa4d
--- /dev/null
+++ b/pfam_gap_rates/DUF3078.gap.json
@@ -0,0 +1 @@
+{"family": "DUF3078", "n_seqs": 213, "length": 102, "gap_rates": [0.3568075117370892, 0.11267605633802817, 0.07042253521126761, 0.04225352112676056, 0.03286384976525822, 0.028169014084507043, 0.028169014084507043, 0.028169014084507043, 0.5586854460093896, 0.028169014084507043, 0.028169014084507043, 0.028169014084507043, 0.023474178403755867, 0.023474178403755867, 0.023474178403755867, 0.018779342723004695, 0.018779342723004695, 0.014084507042253521, 0.009389671361502348, 0.004694835680751174, 0.004694835680751174, 0.004694835680751174, 0.004694835680751174, 0.004694835680751174, 0.004694835680751174, 0.004694835680751174, 0.004694835680751174, 0.004694835680751174, 0.004694835680751174, 0.004694835680751174, 0.004694835680751174, 0.004694835680751174, 0.004694835680751174, 0.7511737089201878, 0.004694835680751174, 0.004694835680751174, 0.004694835680751174, 0.004694835680751174, 0.004694835680751174, 0.004694835680751174, 0.004694835680751174, 0.004694835680751174, 0.004694835680751174, 0.004694835680751174, 0.004694835680751174, 0.004694835680751174, 0.004694835680751174, 0.004694835680751174, 0.004694835680751174, 0.004694835680751174, 0.004694835680751174, 0.7323943661971831, 0.014084507042253521, 0.014084507042253521, 0.009389671361502348, 0.6056338028169014, 0.5117370892018779, 0.056338028169014086, 0.004694835680751174, 0.892018779342723, 0.9107981220657277, 0.892018779342723, 0.8732394366197183, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.004694835680751174, 0.8685446009389671, 0.8028169014084507, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.018779342723004695, 0.07981220657276995, 0.13145539906103287], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF308.gap.json b/pfam_gap_rates/DUF308.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..30d5fded65d0f5764b4908c61543a2329aa52b5e
--- /dev/null
+++ b/pfam_gap_rates/DUF308.gap.json
@@ -0,0 +1 @@
+{"family": "DUF308", "n_seqs": 2487, "length": 74, "gap_rates": [0.5641334941696824, 0.25331724969843183, 0.13510253317249699, 0.08202653799758745, 0.0611178126256534, 0.051065540812223566, 0.04382790510655408, 0.04061117812625653, 0.039404905508644957, 0.03900281463610776, 0.03618817852834741, 0.03337354242058705, 0.03216726980297547, 0.03096099718536389, 0.029754724567752314, 0.02734217933252915, 0.024125452352231604, 0.021712907117008445, 0.01769199839163651, 0.016083634901487735, 0.011258544431041415, 0.01166063530357861, 0.006433453960595094, 0.004422999597909127, 0.0036188178528347406, 0.002010454362685967, 0.0016083634901487736, 0.0012062726176115801, 0.0012062726176115801, 0.0016083634901487736, 0.0016083634901487736, 0.0008041817450743868, 0.0008041817450743868, 0.0008041817450743868, 0.0016083634901487736, 0.0016083634901487736, 0.0016083634901487736, 0.0016083634901487736, 0.002010454362685967, 0.0016083634901487736, 0.02010454362685967, 0.04181745074386811, 0.039404905508644957, 0.04503417772416566, 0.20225170888620828, 0.17410534780860473, 0.1399276236429433, 0.15560916767189384, 0.3518295134700442, 0.2738238841978287, 0.2770406111781263, 0.33856051467631687, 0.4016887816646562, 0.40450341777241655, 0.43546441495778043, 0.9320466425412143, 0.36389223964616, 0.3498190591073583, 0.3301166063530358, 0.33293124246079614, 0.3260956976276638, 0.328508242862887, 0.33092078809811015, 0.3357458785685565, 0.3445918777643747, 0.34901487736228387, 0.3546441495778046, 0.3650985122637716, 0.36751105749899476, 0.37675914756735024, 0.39284278246883797, 0.41174105347808604, 0.47486932046642544, 0.7913148371531966], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF3108.gap.json b/pfam_gap_rates/DUF3108.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..8b2a09422e06692066293ee0510c334e267beb4b
--- /dev/null
+++ b/pfam_gap_rates/DUF3108.gap.json
@@ -0,0 +1 @@
+{"family": "DUF3108", "n_seqs": 662, "length": 316, "gap_rates": [0.8821752265861027, 0.7854984894259819, 0.7084592145015106, 0.6450151057401813, 0.5891238670694864, 0.5392749244712991, 0.5, 0.4516616314199396, 0.4244712990936556, 0.43202416918429004, 0.43655589123867067, 0.4561933534743202, 0.552870090634441, 0.595166163141994, 0.30966767371601206, 0.4425981873111782, 0.6042296072507553, 0.6993957703927492, 0.7673716012084593, 0.8096676737160121, 0.8474320241691843, 0.8761329305135952, 0.8927492447129909, 0.9199395770392749, 0.9410876132930514, 0.947129909365559, 0.9335347432024169, 0.9063444108761329, 0.8851963746223565, 0.8640483383685801, 0.8308157099697885, 0.7945619335347432, 0.7341389728096677, 0.6525679758308157, 0.5, 0.40181268882175225, 0.243202416918429, 0.41389728096676737, 0.10574018126888217, 0.09214501510574018, 0.08006042296072508, 0.07099697885196375, 0.0634441087613293, 0.061933534743202415, 0.06042296072507553, 0.06042296072507553, 0.061933534743202415, 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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF3140.gap.json b/pfam_gap_rates/DUF3140.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..fdb0902ba189f0b0b65a3fcfc9342093880f78b4
--- /dev/null
+++ b/pfam_gap_rates/DUF3140.gap.json
@@ -0,0 +1 @@
+{"family": "DUF3140", "n_seqs": 124, "length": 112, "gap_rates": [0.14516129032258066, 0.056451612903225805, 0.056451612903225805, 0.04838709677419355, 0.04838709677419355, 0.04838709677419355, 0.04838709677419355, 0.008064516129032258, 0.008064516129032258, 0.008064516129032258, 0.008064516129032258, 0.008064516129032258, 0.008064516129032258, 0.008064516129032258, 0.008064516129032258, 0.008064516129032258, 0.008064516129032258, 0.0, 0.0, 0.0, 0.0, 0.008064516129032258, 0.008064516129032258, 0.008064516129032258, 0.008064516129032258, 0.0, 0.0, 0.008064516129032258, 0.31451612903225806, 0.20967741935483872, 0.08064516129032258, 0.6935483870967742, 0.9193548387096774, 0.8951612903225806, 0.5645161290322581, 0.08064516129032258, 0.08064516129032258, 0.08064516129032258, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.6048387096774194, 0.6129032258064516, 0.6048387096774194, 0.6048387096774194, 0.0, 0.0, 0.0, 0.0, 0.0, 0.008064516129032258, 0.008064516129032258, 0.008064516129032258, 0.008064516129032258, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.008064516129032258, 0.03225806451612903, 0.04838709677419355, 0.04838709677419355, 0.04838709677419355, 0.04838709677419355, 0.04838709677419355, 0.9435483870967742, 0.04838709677419355, 0.04838709677419355, 0.46774193548387094, 0.07258064516129033, 0.04838709677419355, 0.782258064516129, 0.8951612903225806, 0.9435483870967742, 0.9435483870967742, 0.8548387096774194, 0.75, 0.16129032258064516, 0.25806451612903225, 0.1532258064516129, 0.06451612903225806, 0.8306451612903226, 0.8306451612903226, 0.9274193548387096, 0.8306451612903226, 0.8306451612903226, 0.056451612903225805, 0.056451612903225805, 0.056451612903225805, 0.056451612903225805, 0.056451612903225805, 0.056451612903225805, 0.056451612903225805, 0.06451612903225806, 0.06451612903225806, 0.11290322580645161], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF3152.gap.json b/pfam_gap_rates/DUF3152.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a2d5971bf8d68d88dc6479f20d40e2ded5b8847f
--- /dev/null
+++ b/pfam_gap_rates/DUF3152.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF3237.gap.json b/pfam_gap_rates/DUF3237.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..27e0497751032023763098a44b7cdfd1fee4315d
--- /dev/null
+++ b/pfam_gap_rates/DUF3237.gap.json
@@ -0,0 +1 @@
+{"family": "DUF3237", "n_seqs": 362, "length": 175, "gap_rates": [0.39502762430939226, 0.30386740331491713, 0.23480662983425415, 0.16574585635359115, 0.13812154696132597, 0.12430939226519337, 0.11049723756906077, 0.10220994475138122, 0.09944751381215469, 0.09392265193370165, 0.09116022099447514, 0.0856353591160221, 0.0856353591160221, 0.0856353591160221, 0.10497237569060773, 0.08839779005524862, 0.919889502762431, 0.0856353591160221, 0.08287292817679558, 0.08011049723756906, 0.08011049723756906, 0.08287292817679558, 0.93646408839779, 0.9033149171270718, 0.11049723756906077, 0.10220994475138122, 0.8701657458563536, 0.2541436464088398, 0.16298342541436464, 0.0856353591160221, 0.0718232044198895, 0.06906077348066299, 0.06629834254143646, 0.06077348066298342, 0.06077348066298342, 0.06077348066298342, 0.055248618784530384, 0.9392265193370166, 0.058011049723756904, 0.04419889502762431, 0.04419889502762431, 0.04419889502762431, 0.04419889502762431, 0.04419889502762431, 0.8176795580110497, 0.8204419889502762, 0.8342541436464088, 0.8176795580110497, 0.8149171270718232, 0.08839779005524862, 0.08839779005524862, 0.04419889502762431, 0.04143646408839779, 0.03867403314917127, 0.03867403314917127, 0.04696132596685083, 0.03591160220994475, 0.16574585635359115, 0.8812154696132597, 0.052486187845303865, 0.03314917127071823, 0.03314917127071823, 0.03038674033149171, 0.03038674033149171, 0.03591160220994475, 0.03314917127071823, 0.03867403314917127, 0.04143646408839779, 0.03591160220994475, 0.6629834254143646, 0.06906077348066299, 0.04419889502762431, 0.03867403314917127, 0.03867403314917127, 0.03867403314917127, 0.03867403314917127, 0.03867403314917127, 0.03867403314917127, 0.03591160220994475, 0.03591160220994475, 0.03038674033149171, 0.03038674033149171, 0.03314917127071823, 0.03591160220994475, 0.03591160220994475, 0.03867403314917127, 0.8480662983425414, 0.8397790055248618, 0.04143646408839779, 0.04419889502762431, 0.04419889502762431, 0.04143646408839779, 0.04419889502762431, 0.04143646408839779, 0.04419889502762431, 0.04419889502762431, 0.04419889502762431, 0.04419889502762431, 0.08287292817679558, 0.10497237569060773, 0.1270718232044199, 0.1712707182320442, 0.9447513812154696, 0.1878453038674033, 0.20441988950276244, 0.20718232044198895, 0.212707182320442, 0.2292817679558011, 0.212707182320442, 0.21823204419889503, 0.24585635359116023, 0.24033149171270718, 0.2292817679558011, 0.9392265193370166, 0.8867403314917127, 0.26243093922651933, 0.26519337016574585, 0.7651933701657458, 0.5607734806629834, 0.40607734806629836, 0.292817679558011, 0.4281767955801105, 0.26795580110497236, 0.2513812154696133, 0.2430939226519337, 0.23480662983425415, 0.212707182320442, 0.856353591160221, 0.1878453038674033, 0.17955801104972377, 0.1685082872928177, 0.1685082872928177, 0.16574585635359115, 0.16574585635359115, 0.16574585635359115, 0.16574585635359115, 0.16574585635359115, 0.1712707182320442, 0.914364640883978, 0.1685082872928177, 0.1712707182320442, 0.17403314917127072, 0.17955801104972377, 0.18232044198895028, 0.930939226519337, 0.17679558011049723, 0.17403314917127072, 0.17403314917127072, 0.17403314917127072, 0.17403314917127072, 0.17955801104972377, 0.17955801104972377, 0.17955801104972377, 0.18232044198895028, 0.18232044198895028, 0.1850828729281768, 0.1850828729281768, 0.1850828729281768, 0.19337016574585636, 0.20165745856353592, 0.20718232044198895, 0.7679558011049724, 0.22375690607734808, 0.7679558011049724, 0.8591160220994475, 0.7983425414364641, 0.7569060773480663, 0.2292817679558011, 0.23480662983425415, 0.2513812154696133, 0.27071823204419887, 0.287292817679558, 0.2983425414364641, 0.36187845303867405, 0.56353591160221], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF329.gap.json b/pfam_gap_rates/DUF329.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..3deeaad14cc1d5a06d530c2379893e055f96c8f0
--- /dev/null
+++ b/pfam_gap_rates/DUF329.gap.json
@@ -0,0 +1 @@
+{"family": "DUF329", "n_seqs": 415, "length": 51, "gap_rates": [0.3710843373493976, 0.06746987951807229, 0.024096385542168676, 0.024096385542168676, 0.021686746987951807, 0.021686746987951807, 0.021686746987951807, 0.021686746987951807, 0.024096385542168676, 0.02650602409638554, 0.05060240963855422, 0.14457831325301204, 0.2216867469879518, 0.24819277108433735, 0.41686746987951806, 0.25060240963855424, 0.15421686746987953, 0.10843373493975904, 0.007228915662650603, 0.0024096385542168677, 0.0024096385542168677, 0.0024096385542168677, 0.0024096385542168677, 0.0024096385542168677, 0.0024096385542168677, 0.0024096385542168677, 0.0024096385542168677, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.004819277108433735, 0.004819277108433735, 0.004819277108433735, 0.007228915662650603, 0.033734939759036145, 0.05301204819277108, 0.09156626506024096, 0.1710843373493976, 0.3180722891566265, 0.5397590361445783, 0.8], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF3362.gap.json b/pfam_gap_rates/DUF3362.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f3a8756451415cc741fdf6f6bc3c8d90e97b7513
--- /dev/null
+++ b/pfam_gap_rates/DUF3362.gap.json
@@ -0,0 +1 @@
+{"family": "DUF3362", "n_seqs": 530, "length": 157, "gap_rates": [0.03773584905660377, 0.007547169811320755, 0.005660377358490566, 0.005660377358490566, 0.005660377358490566, 0.005660377358490566, 0.005660377358490566, 0.005660377358490566, 0.005660377358490566, 0.005660377358490566, 0.0037735849056603774, 0.0037735849056603774, 0.0037735849056603774, 0.0037735849056603774, 0.0037735849056603774, 0.0037735849056603774, 0.0018867924528301887, 0.0018867924528301887, 0.0018867924528301887, 0.0018867924528301887, 0.0018867924528301887, 0.0018867924528301887, 0.0018867924528301887, 0.0018867924528301887, 0.0018867924528301887, 0.0037735849056603774, 0.6792452830188679, 0.6792452830188679, 0.6773584905660377, 0.6773584905660377, 0.6735849056603773, 0.9264150943396227, 0.005660377358490566, 0.007547169811320755, 0.005660377358490566, 0.007547169811320755, 0.005660377358490566, 0.005660377358490566, 0.007547169811320755, 0.009433962264150943, 0.018867924528301886, 0.011320754716981131, 0.011320754716981131, 0.007547169811320755, 0.009433962264150943, 0.013207547169811321, 0.018867924528301886, 0.020754716981132074, 0.020754716981132074, 0.02830188679245283, 0.03207547169811321, 0.04716981132075472, 0.04905660377358491, 0.0509433962264151, 0.0509433962264151, 0.052830188679245285, 0.05660377358490566, 0.05471698113207547, 0.05471698113207547, 0.05471698113207547, 0.05471698113207547, 0.05471698113207547, 0.05471698113207547, 0.05660377358490566, 0.05849056603773585, 0.05660377358490566, 0.05660377358490566, 0.05660377358490566, 0.05660377358490566, 0.05660377358490566, 0.05849056603773585, 0.05849056603773585, 0.06415094339622641, 0.06415094339622641, 0.07169811320754717, 0.08490566037735849, 0.1490566037735849, 0.17358490566037735, 0.18867924528301888, 0.18679245283018867, 0.17547169811320754, 0.17547169811320754, 0.1792452830188679, 0.17358490566037735, 0.17547169811320754, 0.1830188679245283, 0.19245283018867926, 0.19811320754716982, 0.2037735849056604, 0.21320754716981133, 0.7981132075471699, 0.2320754716981132, 0.23962264150943396, 0.2528301886792453, 0.4056603773584906, 0.4037735849056604, 0.8301886792452831, 0.9226415094339623, 0.9433962264150944, 0.8867924528301887, 0.7811320754716982, 0.39245283018867927, 0.37169811320754714, 0.3490566037735849, 0.3452830188679245, 0.330188679245283, 0.3339622641509434, 0.3339622641509434, 0.3471698113207547, 0.3622641509433962, 0.3660377358490566, 0.3754716981132076, 0.41509433962264153, 0.41132075471698115, 0.42830188679245285, 0.4490566037735849, 0.46226415094339623, 0.4811320754716981, 0.48867924528301887, 0.5056603773584906, 0.5207547169811321, 0.5433962264150943, 0.5641509433962264, 0.5849056603773585, 0.6754716981132075, 0.6584905660377358, 0.6490566037735849, 0.9264150943396227, 0.9490566037735849, 0.9377358490566038, 0.9188679245283019, 0.6566037735849056, 0.6773584905660377, 0.6830188679245283, 0.6962264150943396, 0.7075471698113207, 0.7169811320754716, 0.730188679245283, 0.7603773584905661, 0.7547169811320755, 0.7603773584905661, 0.769811320754717, 0.7849056603773585, 0.7886792452830189, 0.7924528301886793, 0.8018867924528302, 0.8113207547169812, 0.8188679245283019, 0.8320754716981132, 0.8452830188679246, 0.8660377358490566, 0.8867924528301887, 0.8981132075471698, 0.9075471698113208, 0.9264150943396227, 0.9377358490566038, 0.9433962264150944], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF3365.gap.json b/pfam_gap_rates/DUF3365.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..3aa55b93d21652a7555e1d28785ef20808453f18
--- /dev/null
+++ b/pfam_gap_rates/DUF3365.gap.json
@@ -0,0 +1 @@
+{"family": "DUF3365", "n_seqs": 588, "length": 258, "gap_rates": [0.9268707482993197, 0.6377551020408163, 0.4812925170068027, 0.39285714285714285, 0.3486394557823129, 0.31462585034013607, 0.304421768707483, 0.29591836734693877, 0.2857142857142857, 0.28061224489795916, 0.27040816326530615, 0.2687074829931973, 0.2653061224489796, 0.2653061224489796, 0.2568027210884354, 0.25, 0.2465986394557823, 0.8214285714285714, 0.7312925170068028, 0.22448979591836735, 0.2227891156462585, 0.21258503401360543, 0.9404761904761905, 0.20238095238095238, 0.19047619047619047, 0.1836734693877551, 0.16326530612244897, 0.15306122448979592, 0.14625850340136054, 0.13945578231292516, 0.13095238095238096, 0.11224489795918367, 0.10714285714285714, 0.10204081632653061, 0.10374149659863946, 0.09693877551020408, 0.0935374149659864, 0.09523809523809523, 0.09183673469387756, 0.09183673469387756, 0.08843537414965986, 0.0935374149659864, 0.9489795918367347, 0.09693877551020408, 0.0935374149659864, 0.8435374149659864, 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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF3381.gap.json b/pfam_gap_rates/DUF3381.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..01b42a198e65f30eaa9b7a95c02a231ad1277594
--- /dev/null
+++ b/pfam_gap_rates/DUF3381.gap.json
@@ -0,0 +1 @@
+{"family": "DUF3381", "n_seqs": 347, "length": 193, "gap_rates": [0.5936599423631124, 0.3170028818443804, 0.19020172910662825, 0.13544668587896252, 0.10662824207492795, 0.1037463976945245, 0.10086455331412104, 0.09798270893371758, 0.09510086455331412, 0.09221902017291066, 0.08645533141210375, 0.08357348703170028, 0.08357348703170028, 0.09510086455331412, 0.0893371757925072, 0.9337175792507204, 0.12968299711815562, 0.11527377521613832, 0.08357348703170028, 0.04899135446685879, 0.04610951008645533, 0.04610951008645533, 0.043227665706051875, 0.040345821325648415, 0.040345821325648415, 0.037463976945244955, 0.037463976945244955, 0.037463976945244955, 0.037463976945244955, 0.037463976945244955, 0.037463976945244955, 0.040345821325648415, 0.9394812680115274, 0.037463976945244955, 0.040345821325648415, 0.037463976945244955, 0.0345821325648415, 0.037463976945244955, 0.03170028818443804, 0.03170028818443804, 0.03170028818443804, 0.03170028818443804, 0.03170028818443804, 0.03170028818443804, 0.03170028818443804, 0.02881844380403458, 0.025936599423631124, 0.025936599423631124, 0.3631123919308357, 0.6685878962536023, 0.7406340057636888, 0.9394812680115274, 0.9481268011527377, 0.9481268011527377, 0.9481268011527377, 0.9423631123919308, 0.7521613832853026, 0.69164265129683, 0.6368876080691642, 0.2968299711815562, 0.2737752161383285, 0.05187319884726225, 0.043227665706051875, 0.10662824207492795, 0.037463976945244955, 0.03170028818443804, 0.025936599423631124, 0.020172910662824207, 0.01729106628242075, 0.023054755043227664, 0.01440922190201729, 0.011527377521613832, 0.011527377521613832, 0.011527377521613832, 0.01440922190201729, 0.01729106628242075, 0.020172910662824207, 0.020172910662824207, 0.020172910662824207, 0.01729106628242075, 0.01729106628242075, 0.01729106628242075, 0.01729106628242075, 0.01729106628242075, 0.01729106628242075, 0.01729106628242075, 0.01729106628242075, 0.01729106628242075, 0.01729106628242075, 0.020172910662824207, 0.020172910662824207, 0.025936599423631124, 0.02881844380403458, 0.02881844380403458, 0.02881844380403458, 0.02881844380403458, 0.03170028818443804, 0.03170028818443804, 0.03170028818443804, 0.03170028818443804, 0.02881844380403458, 0.03170028818443804, 0.0345821325648415, 0.037463976945244955, 0.043227665706051875, 0.040345821325648415, 0.043227665706051875, 0.04899135446685879, 0.04899135446685879, 0.14985590778097982, 0.15561959654178675, 0.1642651296829971, 0.19596541786743515, 0.2276657060518732, 0.3112391930835735, 0.40057636887608067, 0.48703170028818443, 0.5014409221902018, 0.521613832853026, 0.5273775216138329, 0.5677233429394812, 0.6426512968299711, 0.6455331412103746, 0.8270893371757925, 0.8472622478386167, 0.8731988472622478, 0.9048991354466859, 0.9164265129682997, 0.9279538904899135, 0.9481268011527377, 0.9394812680115274, 0.9164265129682997, 0.9106628242074928, 0.8847262247838616, 0.8587896253602305, 0.8357348703170029, 0.8011527377521613, 0.6657060518731989, 0.9193083573487032, 0.7838616714697406, 0.8818443804034583, 0.34293948126801155, 0.23631123919308358, 0.1988472622478386, 0.1642651296829971, 0.138328530259366, 0.11527377521613832, 0.1037463976945245, 0.09221902017291066, 0.08645533141210375, 0.09221902017291066, 0.07204610951008646, 0.9423631123919308, 0.9481268011527377, 0.9250720461095101, 0.07492795389048991, 0.07204610951008646, 0.07204610951008646, 0.07204610951008646, 0.07204610951008646, 0.07204610951008646, 0.08069164265129683, 0.069164265129683, 0.07204610951008646, 0.07204610951008646, 0.069164265129683, 0.07204610951008646, 0.07204610951008646, 0.07492795389048991, 0.07492795389048991, 0.07492795389048991, 0.07780979827089338, 0.07492795389048991, 0.08069164265129683, 0.08069164265129683, 0.08357348703170028, 0.08357348703170028, 0.08357348703170028, 0.0893371757925072, 0.0893371757925072, 0.09221902017291066, 0.09221902017291066, 0.09798270893371758, 0.10086455331412104, 0.1037463976945245, 0.10662824207492795, 0.10951008645533142, 0.10951008645533142, 0.11815561959654179, 0.13256484149855907, 0.19596541786743515, 0.28530259365994237, 0.41210374639769454], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF3410.gap.json b/pfam_gap_rates/DUF3410.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..6e52ac96e86d1b7ff39df479a5712d01c22d4336
--- /dev/null
+++ b/pfam_gap_rates/DUF3410.gap.json
@@ -0,0 +1 @@
+{"family": "DUF3410", "n_seqs": 164, "length": 90, "gap_rates": [0.573170731707317, 0.42073170731707316, 0.35365853658536583, 0.3475609756097561, 0.34146341463414637, 0.3353658536585366, 0.3170731707317073, 0.3048780487804878, 0.2926829268292683, 0.2682926829268293, 0.25, 0.24390243902439024, 0.23780487804878048, 0.22560975609756098, 0.21341463414634146, 0.20121951219512196, 0.1951219512195122, 0.6707317073170732, 0.1402439024390244, 0.0975609756097561, 0.07926829268292683, 0.054878048780487805, 0.042682926829268296, 0.018292682926829267, 0.018292682926829267, 0.012195121951219513, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.14634146341463414, 0.17073170731707318, 0.1951219512195122, 0.5914634146341463, 0.6890243902439024, 0.9207317073170732, 0.7439024390243902, 0.6219512195121951, 0.5365853658536586, 0.018292682926829267, 0.012195121951219513, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.012195121951219513, 0.036585365853658534, 0.054878048780487805, 0.07926829268292683, 0.0975609756097561, 0.10975609756097561, 0.11585365853658537, 0.12804878048780488, 0.1402439024390244, 0.7804878048780488, 0.725609756097561, 0.2865853658536585, 0.2621951219512195, 0.2926829268292683, 0.31097560975609756, 0.3231707317073171, 0.32926829268292684, 0.3475609756097561, 0.3597560975609756, 0.3719512195121951, 0.4024390243902439, 0.4146341463414634, 0.4451219512195122], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF3433.gap.json b/pfam_gap_rates/DUF3433.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b8be29c203ee58f30b3f853d45000222961cadbe
--- /dev/null
+++ b/pfam_gap_rates/DUF3433.gap.json
@@ -0,0 +1 @@
+{"family": "DUF3433", "n_seqs": 510, "length": 95, "gap_rates": [0.42745098039215684, 0.27450980392156865, 0.21372549019607842, 0.13725490196078433, 0.11960784313725491, 0.060784313725490195, 0.043137254901960784, 0.03725490196078431, 0.03725490196078431, 0.03333333333333333, 0.03333333333333333, 0.03137254901960784, 0.03137254901960784, 0.029411764705882353, 0.023529411764705882, 0.021568627450980392, 0.021568627450980392, 0.0196078431372549, 0.0196078431372549, 0.01764705882352941, 0.01764705882352941, 0.01764705882352941, 0.01764705882352941, 0.01568627450980392, 0.013725490196078431, 0.011764705882352941, 0.00980392156862745, 0.00784313725490196, 0.00392156862745098, 0.00392156862745098, 0.00196078431372549, 0.00196078431372549, 0.00196078431372549, 0.00196078431372549, 0.00392156862745098, 0.8901960784313725, 0.10588235294117647, 0.9333333333333333, 0.6764705882352942, 0.013725490196078431, 0.00196078431372549, 0.0, 0.00196078431372549, 0.0, 0.00392156862745098, 0.11372549019607843, 0.00784313725490196, 0.00196078431372549, 0.00196078431372549, 0.00196078431372549, 0.058823529411764705, 0.013725490196078431, 0.0058823529411764705, 0.011764705882352941, 0.049019607843137254, 0.025490196078431372, 0.025490196078431372, 0.011764705882352941, 0.00980392156862745, 0.01764705882352941, 0.013725490196078431, 0.01568627450980392, 0.01764705882352941, 0.01764705882352941, 0.0196078431372549, 0.0196078431372549, 0.045098039215686274, 0.01568627450980392, 0.021568627450980392, 0.021568627450980392, 0.0196078431372549, 0.0196078431372549, 0.0196078431372549, 0.0196078431372549, 0.0196078431372549, 0.0196078431372549, 0.0196078431372549, 0.021568627450980392, 0.023529411764705882, 0.023529411764705882, 0.023529411764705882, 0.8215686274509804, 0.023529411764705882, 0.023529411764705882, 0.023529411764705882, 0.023529411764705882, 0.027450980392156862, 0.03333333333333333, 0.03529411764705882, 0.0392156862745098, 0.043137254901960784, 0.052941176470588235, 0.11372549019607843, 0.30392156862745096, 0.7901960784313725], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF3505.gap.json b/pfam_gap_rates/DUF3505.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..9d70d28d4c7ae781b0dfbd69f5b077bc956f230e
--- /dev/null
+++ b/pfam_gap_rates/DUF3505.gap.json
@@ -0,0 +1 @@
+{"family": "DUF3505", "n_seqs": 143, "length": 120, "gap_rates": [0.8951048951048951, 0.7272727272727273, 0.46153846153846156, 0.3986013986013986, 0.36363636363636365, 0.3356643356643357, 0.26573426573426573, 0.21678321678321677, 0.1958041958041958, 0.17482517482517482, 0.16083916083916083, 0.11188811188811189, 0.055944055944055944, 0.055944055944055944, 0.055944055944055944, 0.04895104895104895, 0.04895104895104895, 0.055944055944055944, 0.055944055944055944, 0.11888111888111888, 0.04195804195804196, 0.055944055944055944, 0.06993006993006994, 0.8741258741258742, 0.8741258741258742, 0.06293706293706294, 0.04895104895104895, 0.04195804195804196, 0.04195804195804196, 0.04195804195804196, 0.04195804195804196, 0.03496503496503497, 0.03496503496503497, 0.16083916083916083, 0.04895104895104895, 0.04195804195804196, 0.04195804195804196, 0.06293706293706294, 0.04195804195804196, 0.11888111888111888, 0.09090909090909091, 0.0979020979020979, 0.46853146853146854, 0.27972027972027974, 0.11188811188811189, 0.04895104895104895, 0.03496503496503497, 0.04195804195804196, 0.04195804195804196, 0.04195804195804196, 0.04195804195804196, 0.7062937062937062, 0.6713286713286714, 0.6713286713286714, 0.5804195804195804, 0.5174825174825175, 0.4755244755244755, 0.1048951048951049, 0.07692307692307693, 0.04195804195804196, 0.0979020979020979, 0.5734265734265734, 0.3916083916083916, 0.2097902097902098, 0.11188811188811189, 0.06993006993006994, 0.04195804195804196, 0.04195804195804196, 0.04895104895104895, 0.06993006993006994, 0.04195804195804196, 0.04195804195804196, 0.03496503496503497, 0.02097902097902098, 0.9370629370629371, 0.027972027972027972, 0.02097902097902098, 0.02097902097902098, 0.02097902097902098, 0.02097902097902098, 0.02097902097902098, 0.02097902097902098, 0.02097902097902098, 0.02097902097902098, 0.916083916083916, 0.02097902097902098, 0.02097902097902098, 0.02097902097902098, 0.7342657342657343, 0.02097902097902098, 0.02097902097902098, 0.027972027972027972, 0.027972027972027972, 0.027972027972027972, 0.8601398601398601, 0.7622377622377622, 0.5664335664335665, 0.5524475524475524, 0.04195804195804196, 0.04195804195804196, 0.04895104895104895, 0.055944055944055944, 0.055944055944055944, 0.04895104895104895, 0.04895104895104895, 0.04895104895104895, 0.055944055944055944, 0.055944055944055944, 0.07692307692307693, 0.07692307692307693, 0.07692307692307693, 0.08391608391608392, 0.09090909090909091, 0.09090909090909091, 0.09090909090909091, 0.09090909090909091, 0.11888111888111888, 0.1258741258741259, 0.1958041958041958, 0.5734265734265734], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF3516.gap.json b/pfam_gap_rates/DUF3516.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..faf6cf4f305f2c8e90fccca9065e5b49405ae5a0
--- /dev/null
+++ b/pfam_gap_rates/DUF3516.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF3526.gap.json b/pfam_gap_rates/DUF3526.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..40b9c4d11245ecf9123a2f936e72a5a2bee848f2
--- /dev/null
+++ b/pfam_gap_rates/DUF3526.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF3534.gap.json b/pfam_gap_rates/DUF3534.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..991886f07937b7a40a3b6c5acbbe3edaa9162823
--- /dev/null
+++ b/pfam_gap_rates/DUF3534.gap.json
@@ -0,0 +1 @@
+{"family": "DUF3534", "n_seqs": 123, "length": 163, "gap_rates": [0.5691056910569106, 0.5284552845528455, 0.5203252032520326, 0.5040650406504065, 0.4959349593495935, 0.4959349593495935, 0.4959349593495935, 0.4959349593495935, 0.4959349593495935, 0.4959349593495935, 0.4715447154471545, 0.37398373983739835, 0.35772357723577236, 0.34959349593495936, 0.34959349593495936, 0.34959349593495936, 0.35772357723577236, 0.34959349593495936, 0.34959349593495936, 0.3902439024390244, 0.34959349593495936, 0.34959349593495936, 0.34959349593495936, 0.34959349593495936, 0.34959349593495936, 0.34959349593495936, 0.34959349593495936, 0.34959349593495936, 0.34959349593495936, 0.34959349593495936, 0.34959349593495936, 0.34959349593495936, 0.34146341463414637, 0.34146341463414637, 0.34146341463414637, 0.3333333333333333, 0.3252032520325203, 0.3089430894308943, 0.2845528455284553, 0.22764227642276422, 0.9105691056910569, 0.9349593495934959, 0.926829268292683, 0.8943089430894309, 0.25203252032520324, 0.2926829268292683, 0.25203252032520324, 0.25203252032520324, 0.24390243902439024, 0.23577235772357724, 0.24390243902439024, 0.25203252032520324, 0.24390243902439024, 0.24390243902439024, 0.25203252032520324, 0.24390243902439024, 0.23577235772357724, 0.7073170731707317, 0.23577235772357724, 0.2845528455284553, 0.23577235772357724, 0.23577235772357724, 0.23577235772357724, 0.23577235772357724, 0.24390243902439024, 0.23577235772357724, 0.23577235772357724, 0.23577235772357724, 0.23577235772357724, 0.23577235772357724, 0.23577235772357724, 0.23577235772357724, 0.23577235772357724, 0.23577235772357724, 0.23577235772357724, 0.9186991869918699, 0.23577235772357724, 0.21951219512195122, 0.21138211382113822, 0.18699186991869918, 0.1951219512195122, 0.22764227642276422, 0.24390243902439024, 0.25203252032520324, 0.3170731707317073, 0.3333333333333333, 0.35772357723577236, 0.35772357723577236, 0.3821138211382114, 0.3983739837398374, 0.8943089430894309, 0.9349593495934959, 0.6422764227642277, 0.44715447154471544, 0.5040650406504065, 0.4959349593495935, 0.5284552845528455, 0.5040650406504065, 0.4634146341463415, 0.7967479674796748, 0.8373983739837398, 0.9024390243902439, 0.926829268292683, 0.9349593495934959, 0.9105691056910569, 0.8780487804878049, 0.8211382113821138, 0.7967479674796748, 0.4796747967479675, 0.4878048780487805, 0.4959349593495935, 0.5040650406504065, 0.5040650406504065, 0.5040650406504065, 0.5040650406504065, 0.5040650406504065, 0.5040650406504065, 0.5040650406504065, 0.5040650406504065, 0.5121951219512195, 0.5121951219512195, 0.5121951219512195, 0.5203252032520326, 0.5365853658536586, 0.5447154471544715, 0.5691056910569106, 0.6341463414634146, 0.6178861788617886, 0.8617886178861789, 0.6341463414634146, 0.6341463414634146, 0.6341463414634146, 0.6260162601626016, 0.6097560975609756, 0.6178861788617886, 0.8861788617886179, 0.6260162601626016, 0.7398373983739838, 0.6097560975609756, 0.6097560975609756, 0.6097560975609756, 0.6097560975609756, 0.6178861788617886, 0.6178861788617886, 0.6178861788617886, 0.6178861788617886, 0.6341463414634146, 0.6585365853658537, 0.6666666666666666, 0.6829268292682927, 0.6747967479674797, 0.6666666666666666, 0.6829268292682927, 0.6910569105691057, 0.6991869918699187, 0.6991869918699187, 0.6991869918699187, 0.6991869918699187, 0.6991869918699187, 0.6991869918699187, 0.7073170731707317, 0.7073170731707317, 0.7479674796747967], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF3548.gap.json b/pfam_gap_rates/DUF3548.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..536b6408f89dcee0a525f5a45c499174f039ae0a
--- /dev/null
+++ b/pfam_gap_rates/DUF3548.gap.json
@@ -0,0 +1 @@
+{"family": "DUF3548", "n_seqs": 160, "length": 230, "gap_rates": [0.91875, 0.8125, 0.7, 0.60625, 0.56875, 0.56875, 0.55, 0.53125, 0.525, 0.5125, 0.4625, 0.4625, 0.4625, 0.4625, 0.45625, 0.45625, 0.44375, 0.44375, 0.44375, 0.45, 0.7, 0.63125, 0.625, 0.575, 0.4125, 0.40625, 0.4, 0.3875, 0.3875, 0.38125, 0.38125, 0.38125, 0.38125, 0.38125, 0.36875, 0.93125, 0.3625, 0.325, 0.28125, 0.25625, 0.23125, 0.225, 0.21875, 0.21875, 0.21875, 0.21875, 0.21875, 0.21875, 0.21875, 0.225, 0.225, 0.7125, 0.73125, 0.74375, 0.75, 0.75625, 0.75625, 0.75625, 0.75625, 0.75625, 0.80625, 0.825, 0.8875, 0.8875, 0.9, 0.90625, 0.8875, 0.8875, 0.8375, 0.8125, 0.7625, 0.75625, 0.75625, 0.75625, 0.75625, 0.75, 0.74375, 0.74375, 0.7125, 0.7, 0.43125, 0.38125, 0.31875, 0.325, 0.31875, 0.30625, 0.30625, 0.3125, 0.29375, 0.30625, 0.2375, 0.2375, 0.24375, 0.2375, 0.2375, 0.225, 0.23125, 0.25, 0.25625, 0.25, 0.25625, 0.25, 0.25625, 0.25625, 0.29375, 0.2875, 0.30625, 0.3, 0.3125, 0.3, 0.39375, 0.8125, 0.9375, 0.55625, 0.3375, 0.3, 0.2125, 0.18125, 0.15625, 0.15625, 0.14375, 0.15, 0.14375, 0.125, 0.1125, 0.0875, 0.9375, 0.05625, 0.05625, 0.05625, 0.05, 0.05, 0.05, 0.05, 0.05, 0.05, 0.05, 0.05625, 0.05625, 0.1, 0.10625, 0.1, 0.06875, 0.875, 0.8375, 0.0875, 0.1, 0.8875, 0.88125, 0.10625, 0.08125, 0.075, 0.075, 0.08125, 0.075, 0.075, 0.075, 0.06875, 0.06875, 0.06875, 0.06875, 0.075, 0.06875, 0.06875, 0.10625, 0.06875, 0.06875, 0.06875, 0.06875, 0.08125, 0.09375, 0.14375, 0.20625, 0.225, 0.24375, 0.275, 0.28125, 0.28125, 0.2875, 0.2875, 0.28125, 0.28125, 0.28125, 0.28125, 0.28125, 0.28125, 0.275, 0.275, 0.28125, 0.28125, 0.2875, 0.2875, 0.2875, 0.2875, 0.29375, 0.29375, 0.29375, 0.3125, 0.3125, 0.31875, 0.31875, 0.60625, 0.33125, 0.34375, 0.35, 0.34375, 0.34375, 0.34375, 0.34375, 0.34375, 0.34375, 0.45, 0.475, 0.425, 0.51875, 0.91875, 0.55, 0.6, 0.625, 0.625, 0.63125, 0.625, 0.6125, 0.61875, 0.65625, 0.68125, 0.69375, 0.71875, 0.75, 0.8125], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF3572.gap.json b/pfam_gap_rates/DUF3572.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..21066a7d59518eb0fdfb23b918fe10035ebe87c7
--- /dev/null
+++ b/pfam_gap_rates/DUF3572.gap.json
@@ -0,0 +1 @@
+{"family": "DUF3572", "n_seqs": 129, "length": 83, "gap_rates": [0.7209302325581395, 0.2558139534883721, 0.13178294573643412, 0.11627906976744186, 0.10852713178294573, 0.06976744186046512, 0.03875968992248062, 0.03875968992248062, 0.03875968992248062, 0.03875968992248062, 0.031007751937984496, 0.015503875968992248, 0.015503875968992248, 0.015503875968992248, 0.015503875968992248, 0.007751937984496124, 0.0, 0.007751937984496124, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.007751937984496124, 0.046511627906976744, 0.24031007751937986], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF3598.gap.json b/pfam_gap_rates/DUF3598.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..9838ea4bcea859ef948086428e076bdb3aa49fc7
--- /dev/null
+++ b/pfam_gap_rates/DUF3598.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF35_N.gap.json b/pfam_gap_rates/DUF35_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..94e9b1d3ad6b1a9758cdf448804201b25652c067
--- /dev/null
+++ b/pfam_gap_rates/DUF35_N.gap.json
@@ -0,0 +1 @@
+{"family": "DUF35_N", "n_seqs": 732, "length": 39, "gap_rates": [0.5710382513661202, 0.4344262295081967, 0.3483606557377049, 0.26639344262295084, 0.2103825136612022, 0.17076502732240437, 0.11475409836065574, 0.06830601092896176, 0.036885245901639344, 0.028688524590163935, 0.01639344262295082, 0.01366120218579235, 0.00273224043715847, 0.001366120218579235, 0.0, 0.00273224043715847, 0.01639344262295082, 0.001366120218579235, 0.0, 0.0, 0.009562841530054645, 0.0, 0.00273224043715847, 0.001366120218579235, 0.0, 0.0, 0.00273224043715847, 0.00546448087431694, 0.9412568306010929, 0.9412568306010929, 0.01092896174863388, 0.02185792349726776, 0.023224043715846996, 0.05191256830601093, 0.10382513661202186, 0.21584699453551912, 0.3620218579234973, 0.5, 0.73224043715847], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF3604.gap.json b/pfam_gap_rates/DUF3604.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..6e92855fb90747d71a197a9f9a4dc065e8236001
--- /dev/null
+++ b/pfam_gap_rates/DUF3604.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF3641.gap.json b/pfam_gap_rates/DUF3641.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f475c76710888d0452b2f6624e7965612ebbc313
--- /dev/null
+++ b/pfam_gap_rates/DUF3641.gap.json
@@ -0,0 +1 @@
+{"family": "DUF3641", "n_seqs": 222, "length": 148, "gap_rates": [0.04954954954954955, 0.02702702702702703, 0.02702702702702703, 0.02702702702702703, 0.02702702702702703, 0.02252252252252252, 0.018018018018018018, 0.018018018018018018, 0.018018018018018018, 0.013513513513513514, 0.013513513513513514, 0.013513513513513514, 0.013513513513513514, 0.013513513513513514, 0.013513513513513514, 0.013513513513513514, 0.018018018018018018, 0.02252252252252252, 0.009009009009009009, 0.02252252252252252, 0.009009009009009009, 0.009009009009009009, 0.009009009009009009, 0.009009009009009009, 0.009009009009009009, 0.009009009009009009, 0.009009009009009009, 0.009009009009009009, 0.009009009009009009, 0.013513513513513514, 0.009009009009009009, 0.009009009009009009, 0.0045045045045045045, 0.0045045045045045045, 0.0045045045045045045, 0.0045045045045045045, 0.0045045045045045045, 0.0045045045045045045, 0.0045045045045045045, 0.0045045045045045045, 0.0045045045045045045, 0.0045045045045045045, 0.0045045045045045045, 0.009009009009009009, 0.0045045045045045045, 0.0045045045045045045, 0.0045045045045045045, 0.0045045045045045045, 0.0045045045045045045, 0.0045045045045045045, 0.0045045045045045045, 0.0045045045045045045, 0.0045045045045045045, 0.0045045045045045045, 0.0045045045045045045, 0.0045045045045045045, 0.0045045045045045045, 0.0045045045045045045, 0.0045045045045045045, 0.0045045045045045045, 0.0045045045045045045, 0.0045045045045045045, 0.0045045045045045045, 0.0045045045045045045, 0.0045045045045045045, 0.0045045045045045045, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0045045045045045045, 0.0045045045045045045, 0.0045045045045045045, 0.0045045045045045045, 0.0045045045045045045, 0.0045045045045045045, 0.0045045045045045045, 0.0045045045045045045, 0.0045045045045045045, 0.0045045045045045045, 0.0045045045045045045, 0.0045045045045045045, 0.0045045045045045045, 0.0045045045045045045, 0.0045045045045045045, 0.0045045045045045045, 0.0045045045045045045, 0.0045045045045045045, 0.0045045045045045045, 0.0045045045045045045, 0.0045045045045045045, 0.481981981981982, 0.8603603603603603, 0.9099099099099099, 0.9234234234234234, 0.9369369369369369, 0.9459459459459459, 0.9324324324324325, 0.918918918918919, 0.8738738738738738, 0.527027027027027, 0.4009009009009009, 0.0045045045045045045, 0.0045045045045045045, 0.018018018018018018, 0.036036036036036036, 0.9054054054054054, 0.08108108108108109, 0.009009009009009009, 0.0045045045045045045, 0.0045045045045045045, 0.0045045045045045045, 0.0045045045045045045, 0.0045045045045045045, 0.0045045045045045045, 0.009009009009009009, 0.0045045045045045045, 0.7927927927927928, 0.6711711711711712, 0.0045045045045045045, 0.0045045045045045045, 0.009009009009009009, 0.0045045045045045045, 0.0045045045045045045, 0.0045045045045045045, 0.0045045045045045045, 0.0045045045045045045, 0.0045045045045045045, 0.0045045045045045045, 0.0045045045045045045, 0.0045045045045045045, 0.0045045045045045045, 0.0045045045045045045, 0.0045045045045045045, 0.0045045045045045045, 0.0045045045045045045, 0.009009009009009009, 0.009009009009009009, 0.0045045045045045045, 0.0045045045045045045, 0.06306306306306306, 0.10810810810810811, 0.11261261261261261, 0.11261261261261261, 0.21621621621621623], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF3685.gap.json b/pfam_gap_rates/DUF3685.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a72d50c6f095f561f9ca48af7b00469950844edb
--- /dev/null
+++ b/pfam_gap_rates/DUF3685.gap.json
@@ -0,0 +1 @@
+{"family": "DUF3685", "n_seqs": 114, "length": 197, "gap_rates": [0.9122807017543859, 0.6140350877192983, 0.5964912280701754, 0.5964912280701754, 0.5789473684210527, 0.5789473684210527, 0.5701754385964912, 0.5701754385964912, 0.5701754385964912, 0.5701754385964912, 0.5701754385964912, 0.5701754385964912, 0.5701754385964912, 0.5701754385964912, 0.5701754385964912, 0.5701754385964912, 0.5701754385964912, 0.5701754385964912, 0.5701754385964912, 0.5701754385964912, 0.5701754385964912, 0.5701754385964912, 0.5701754385964912, 0.5701754385964912, 0.5701754385964912, 0.5701754385964912, 0.5701754385964912, 0.5614035087719298, 0.5614035087719298, 0.5614035087719298, 0.5614035087719298, 0.5614035087719298, 0.543859649122807, 0.5350877192982456, 0.5263157894736842, 0.45614035087719296, 0.38596491228070173, 0.38596491228070173, 0.35964912280701755, 0.3157894736842105, 0.3157894736842105, 0.3157894736842105, 0.3157894736842105, 0.3157894736842105, 0.3157894736842105, 0.3157894736842105, 0.3157894736842105, 0.3157894736842105, 0.3157894736842105, 0.3157894736842105, 0.3157894736842105, 0.3157894736842105, 0.3157894736842105, 0.3157894736842105, 0.3157894736842105, 0.3157894736842105, 0.3157894736842105, 0.3157894736842105, 0.3157894736842105, 0.3157894736842105, 0.3157894736842105, 0.3157894736842105, 0.3157894736842105, 0.3157894736842105, 0.30701754385964913, 0.30701754385964913, 0.30701754385964913, 0.30701754385964913, 0.2982456140350877, 0.2982456140350877, 0.2807017543859649, 0.9473684210526315, 0.2719298245614035, 0.2543859649122807, 0.2543859649122807, 0.2543859649122807, 0.2543859649122807, 0.8421052631578947, 0.868421052631579, 0.868421052631579, 0.8421052631578947, 0.2543859649122807, 0.2543859649122807, 0.2543859649122807, 0.2543859649122807, 0.2543859649122807, 0.2543859649122807, 0.2543859649122807, 0.2543859649122807, 0.2543859649122807, 0.2543859649122807, 0.2543859649122807, 0.2543859649122807, 0.2543859649122807, 0.2543859649122807, 0.2543859649122807, 0.2543859649122807, 0.24561403508771928, 0.24561403508771928, 0.24561403508771928, 0.24561403508771928, 0.24561403508771928, 0.24561403508771928, 0.23684210526315788, 0.23684210526315788, 0.23684210526315788, 0.24561403508771928, 0.23684210526315788, 0.23684210526315788, 0.23684210526315788, 0.23684210526315788, 0.23684210526315788, 0.23684210526315788, 0.21929824561403508, 0.21929824561403508, 0.20175438596491227, 0.20175438596491227, 0.20175438596491227, 0.17543859649122806, 0.14912280701754385, 0.13157894736842105, 0.08771929824561403, 0.05263157894736842, 0.02631578947368421, 0.008771929824561403, 0.03508771929824561, 0.043859649122807015, 0.08771929824561403, 0.10526315789473684, 0.14035087719298245, 0.14035087719298245, 0.14912280701754385, 0.16666666666666666, 0.23684210526315788, 0.23684210526315788, 0.23684210526315788, 0.23684210526315788, 0.23684210526315788, 0.23684210526315788, 0.23684210526315788, 0.23684210526315788, 0.23684210526315788, 0.23684210526315788, 0.24561403508771928, 0.24561403508771928, 0.2543859649122807, 0.24561403508771928, 0.24561403508771928, 0.24561403508771928, 0.24561403508771928, 0.24561403508771928, 0.24561403508771928, 0.24561403508771928, 0.24561403508771928, 0.24561403508771928, 0.24561403508771928, 0.24561403508771928, 0.24561403508771928, 0.24561403508771928, 0.24561403508771928, 0.24561403508771928, 0.24561403508771928, 0.24561403508771928, 0.24561403508771928, 0.24561403508771928, 0.24561403508771928, 0.24561403508771928, 0.24561403508771928, 0.24561403508771928, 0.24561403508771928, 0.24561403508771928, 0.24561403508771928, 0.24561403508771928, 0.24561403508771928, 0.24561403508771928, 0.24561403508771928, 0.24561403508771928, 0.24561403508771928, 0.24561403508771928, 0.2543859649122807, 0.24561403508771928, 0.24561403508771928, 0.24561403508771928, 0.24561403508771928, 0.2543859649122807, 0.2543859649122807, 0.2543859649122807, 0.2543859649122807, 0.2631578947368421, 0.2631578947368421, 0.2631578947368421, 0.2631578947368421, 0.2631578947368421, 0.2894736842105263, 0.42105263157894735, 0.43859649122807015, 0.4473684210526316], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF370.gap.json b/pfam_gap_rates/DUF370.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..1439627cf9f4084f7c6650e423ad29f6cdcf6909
--- /dev/null
+++ b/pfam_gap_rates/DUF370.gap.json
@@ -0,0 +1 @@
+{"family": "DUF370", "n_seqs": 689, "length": 80, "gap_rates": [0.1988388969521045, 0.02902757619738752, 0.018867924528301886, 0.01741654571843251, 0.015965166908563134, 0.015965166908563134, 0.01451378809869376, 0.011611030478955007, 0.0043541364296081275, 0.0043541364296081275, 0.0043541364296081275, 0.0043541364296081275, 0.0043541364296081275, 0.0043541364296081275, 0.002902757619738752, 0.002902757619738752, 0.002902757619738752, 0.002902757619738752, 0.002902757619738752, 0.002902757619738752, 0.002902757619738752, 0.6995645863570392, 0.7619738751814223, 0.706821480406386, 0.6981132075471698, 0.002902757619738752, 0.0043541364296081275, 0.0043541364296081275, 0.0043541364296081275, 0.001451378809869376, 0.001451378809869376, 0.001451378809869376, 0.001451378809869376, 0.001451378809869376, 0.002902757619738752, 0.008708272859216255, 0.010159651669085631, 0.0043541364296081275, 0.013062409288824383, 0.008708272859216255, 0.001451378809869376, 0.0043541364296081275, 0.001451378809869376, 0.0420899854862119, 0.01451378809869376, 0.002902757619738752, 0.040638606676342524, 0.023222060957910014, 0.02177068214804064, 0.033381712626995644, 0.08708272859216255, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.18577648766328012, 0.8708272859216255, 0.8751814223512336, 0.8664731494920174, 0.0, 0.0043541364296081275, 0.0, 0.002902757619738752, 0.001451378809869376, 0.002902757619738752, 0.002902757619738752, 0.002902757619738752, 0.002902757619738752, 0.002902757619738752, 0.002902757619738752, 0.0043541364296081275, 0.005805515239477504, 0.005805515239477504, 0.008708272859216255, 0.010159651669085631, 0.011611030478955007, 0.40493468795355586], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF3794.gap.json b/pfam_gap_rates/DUF3794.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..4309166a28d8ce0f0d08b082286ad601d7588531
--- /dev/null
+++ b/pfam_gap_rates/DUF3794.gap.json
@@ -0,0 +1 @@
+{"family": "DUF3794", "n_seqs": 684, "length": 86, "gap_rates": [0.5423976608187134, 0.2412280701754386, 0.1608187134502924, 0.06871345029239766, 0.04678362573099415, 0.03654970760233918, 0.029239766081871343, 0.023391812865497075, 0.023391812865497075, 0.019005847953216373, 0.013157894736842105, 0.01023391812865497, 0.008771929824561403, 0.008771929824561403, 0.008771929824561403, 0.007309941520467836, 0.005847953216374269, 0.005847953216374269, 0.007309941520467836, 0.005847953216374269, 0.0043859649122807015, 0.0043859649122807015, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0029239766081871343, 0.02631578947368421, 0.3347953216374269, 0.9210526315789473, 0.9473684210526315, 0.8786549707602339, 0.17105263157894737, 0.0043859649122807015, 0.0014619883040935672, 0.0014619883040935672, 0.014619883040935672, 0.0043859649122807015, 0.0014619883040935672, 0.0014619883040935672, 0.0014619883040935672, 0.0014619883040935672, 0.0014619883040935672, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0014619883040935672, 0.0014619883040935672, 0.0, 0.0, 0.008771929824561403, 0.017543859649122806, 0.02046783625730994, 0.03216374269005848, 0.04532163742690058, 0.027777777777777776, 0.033625730994152045, 0.05116959064327485, 0.05116959064327485, 0.054093567251461985, 0.05847953216374269, 0.059941520467836254, 0.06871345029239766, 0.0804093567251462, 0.09064327485380116, 0.1067251461988304, 0.11988304093567251, 0.12426900584795321, 0.14619883040935672, 0.17982456140350878, 0.22076023391812866, 0.37280701754385964, 0.5380116959064327, 0.8611111111111112], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF3795.gap.json b/pfam_gap_rates/DUF3795.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ac20378b31df51a3da6a67a92c9bad3ed946a835
--- /dev/null
+++ b/pfam_gap_rates/DUF3795.gap.json
@@ -0,0 +1 @@
+{"family": "DUF3795", "n_seqs": 274, "length": 115, "gap_rates": [0.781021897810219, 0.24817518248175183, 0.18248175182481752, 0.15328467153284672, 0.14963503649635038, 0.14963503649635038, 0.14963503649635038, 0.15328467153284672, 0.145985401459854, 0.145985401459854, 0.14233576642335766, 0.14233576642335766, 0.1386861313868613, 0.1386861313868613, 0.1386861313868613, 0.14233576642335766, 0.14233576642335766, 0.1897810218978102, 0.33941605839416056, 0.3613138686131387, 0.4744525547445255, 0.48905109489051096, 0.4708029197080292, 0.4744525547445255, 0.4781021897810219, 0.49635036496350365, 0.4927007299270073, 0.5072992700729927, 0.6058394160583942, 0.6204379562043796, 0.7956204379562044, 0.8467153284671532, 0.8540145985401459, 0.8613138686131386, 0.8795620437956204, 0.8832116788321168, 0.8941605839416058, 0.9197080291970803, 0.9343065693430657, 0.9343065693430657, 0.9197080291970803, 0.916058394160584, 0.8832116788321168, 0.8832116788321168, 0.8613138686131386, 0.8613138686131386, 0.8503649635036497, 0.8211678832116789, 0.6605839416058394, 0.6131386861313869, 0.6021897810218978, 0.5, 0.48905109489051096, 0.48175182481751827, 0.4708029197080292, 0.4708029197080292, 0.4708029197080292, 0.4708029197080292, 0.45985401459854014, 0.4416058394160584, 0.4124087591240876, 0.3686131386861314, 0.34306569343065696, 0.24452554744525548, 0.01824817518248175, 0.014598540145985401, 0.014598540145985401, 0.014598540145985401, 0.010948905109489052, 0.010948905109489052, 0.010948905109489052, 0.010948905109489052, 0.010948905109489052, 0.0072992700729927005, 0.0036496350364963502, 0.0072992700729927005, 0.01824817518248175, 0.1897810218978102, 0.22262773722627738, 0.22992700729927007, 0.5656934306569343, 0.8941605839416058, 0.9343065693430657, 0.9343065693430657, 0.864963503649635, 0.5072992700729927, 0.010948905109489052, 0.010948905109489052, 0.0, 0.010948905109489052, 0.014598540145985401, 0.014598540145985401, 0.0036496350364963502, 0.0, 0.0, 0.0, 0.8540145985401459, 0.0, 0.010948905109489052, 0.0, 0.0, 0.0, 0.0036496350364963502, 0.0036496350364963502, 0.0036496350364963502, 0.0036496350364963502, 0.0036496350364963502, 0.0036496350364963502, 0.8357664233576643, 0.0036496350364963502, 0.014598540145985401, 0.014598540145985401, 0.043795620437956206, 0.12408759124087591, 0.42700729927007297], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF3799.gap.json b/pfam_gap_rates/DUF3799.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..70e20e66ac141b24ff4987c69518e71735beb596
--- /dev/null
+++ b/pfam_gap_rates/DUF3799.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4015.gap.json b/pfam_gap_rates/DUF4015.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e6e8b5fe04ec93979981ec1fab35720e2db5a249
--- /dev/null
+++ b/pfam_gap_rates/DUF4015.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4033.gap.json b/pfam_gap_rates/DUF4033.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..cfe015467bd472ea83a799926801ad29f69c8203
--- /dev/null
+++ b/pfam_gap_rates/DUF4033.gap.json
@@ -0,0 +1 @@
+{"family": "DUF4033", "n_seqs": 164, "length": 89, "gap_rates": [0.16463414634146342, 0.16463414634146342, 0.1524390243902439, 0.1524390243902439, 0.1524390243902439, 0.14634146341463414, 0.14634146341463414, 0.14634146341463414, 0.14634146341463414, 0.1402439024390244, 0.13414634146341464, 0.13414634146341464, 0.14634146341463414, 0.823170731707317, 0.6951219512195121, 0.6951219512195121, 0.7073170731707317, 0.725609756097561, 0.6341463414634146, 0.24390243902439024, 0.2926829268292683, 0.2682926829268293, 0.22560975609756098, 0.12804878048780488, 0.08536585365853659, 0.054878048780487805, 0.04878048780487805, 0.042682926829268296, 0.042682926829268296, 0.042682926829268296, 0.042682926829268296, 0.036585365853658534, 0.036585365853658534, 0.036585365853658534, 0.024390243902439025, 0.024390243902439025, 0.024390243902439025, 0.024390243902439025, 0.03048780487804878, 0.03048780487804878, 0.03048780487804878, 0.03048780487804878, 0.03048780487804878, 0.024390243902439025, 0.024390243902439025, 0.024390243902439025, 0.03048780487804878, 0.024390243902439025, 0.024390243902439025, 0.024390243902439025, 0.018292682926829267, 0.018292682926829267, 0.018292682926829267, 0.012195121951219513, 0.018292682926829267, 0.03048780487804878, 0.03048780487804878, 0.03048780487804878, 0.042682926829268296, 0.03048780487804878, 0.03048780487804878, 0.036585365853658534, 0.036585365853658534, 0.036585365853658534, 0.036585365853658534, 0.036585365853658534, 0.036585365853658534, 0.036585365853658534, 0.036585365853658534, 0.06097560975609756, 0.06707317073170732, 0.06707317073170732, 0.07317073170731707, 0.07317073170731707, 0.07926829268292683, 0.08536585365853659, 0.08536585365853659, 0.08536585365853659, 0.10365853658536585, 0.10365853658536585, 0.10365853658536585, 0.10365853658536585, 0.10365853658536585, 0.10365853658536585, 0.10365853658536585, 0.14634146341463414, 0.27439024390243905, 0.5121951219512195, 0.7987804878048781], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4050.gap.json b/pfam_gap_rates/DUF4050.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..503e4ee3370d89e9767f85760a9f671d3af4ffb0
--- /dev/null
+++ b/pfam_gap_rates/DUF4050.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4082.gap.json b/pfam_gap_rates/DUF4082.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..2c2231696d9346ced2503326ef11f68f1c3ea81e
--- /dev/null
+++ b/pfam_gap_rates/DUF4082.gap.json
@@ -0,0 +1 @@
+{"family": "DUF4082", "n_seqs": 169, "length": 154, "gap_rates": [0.4378698224852071, 0.3431952662721893, 0.3431952662721893, 0.28402366863905326, 0.1893491124260355, 0.1301775147928994, 0.11834319526627218, 0.10059171597633136, 0.10650887573964497, 0.09467455621301775, 0.09467455621301775, 0.08875739644970414, 0.08284023668639054, 0.0650887573964497, 0.07100591715976332, 0.029585798816568046, 0.023668639053254437, 0.01775147928994083, 0.01775147928994083, 0.01775147928994083, 0.011834319526627219, 0.011834319526627219, 0.011834319526627219, 0.011834319526627219, 0.011834319526627219, 0.011834319526627219, 0.011834319526627219, 0.005917159763313609, 0.005917159763313609, 0.005917159763313609, 0.005917159763313609, 0.005917159763313609, 0.005917159763313609, 0.005917159763313609, 0.005917159763313609, 0.005917159763313609, 0.029585798816568046, 0.023668639053254437, 0.023668639053254437, 0.023668639053254437, 0.011834319526627219, 0.01775147928994083, 0.023668639053254437, 0.01775147928994083, 0.9408284023668639, 0.011834319526627219, 0.011834319526627219, 0.011834319526627219, 0.005917159763313609, 0.005917159763313609, 0.005917159763313609, 0.005917159763313609, 0.005917159763313609, 0.005917159763313609, 0.005917159763313609, 0.005917159763313609, 0.005917159763313609, 0.005917159763313609, 0.005917159763313609, 0.005917159763313609, 0.005917159763313609, 0.005917159763313609, 0.005917159763313609, 0.011834319526627219, 0.005917159763313609, 0.011834319526627219, 0.005917159763313609, 0.005917159763313609, 0.005917159763313609, 0.005917159763313609, 0.005917159763313609, 0.011834319526627219, 0.04142011834319527, 0.005917159763313609, 0.005917159763313609, 0.011834319526627219, 0.01775147928994083, 0.011834319526627219, 0.011834319526627219, 0.01775147928994083, 0.011834319526627219, 0.011834319526627219, 0.011834319526627219, 0.011834319526627219, 0.011834319526627219, 0.005917159763313609, 0.005917159763313609, 0.005917159763313609, 0.005917159763313609, 0.005917159763313609, 0.005917159763313609, 0.005917159763313609, 0.005917159763313609, 0.011834319526627219, 0.01775147928994083, 0.023668639053254437, 0.01775147928994083, 0.1893491124260355, 0.023668639053254437, 0.029585798816568046, 0.023668639053254437, 0.023668639053254437, 0.029585798816568046, 0.029585798816568046, 0.029585798816568046, 0.029585798816568046, 0.03550295857988166, 0.03550295857988166, 0.029585798816568046, 0.029585798816568046, 0.04142011834319527, 0.9112426035502958, 0.6035502958579881, 0.05325443786982249, 0.05325443786982249, 0.03550295857988166, 0.03550295857988166, 0.03550295857988166, 0.03550295857988166, 0.03550295857988166, 0.03550295857988166, 0.03550295857988166, 0.03550295857988166, 0.03550295857988166, 0.05917159763313609, 0.31952662721893493, 0.5088757396449705, 0.5029585798816568, 0.3905325443786982, 0.24260355029585798, 0.22485207100591717, 0.0650887573964497, 0.05917159763313609, 0.05917159763313609, 0.05917159763313609, 0.13609467455621302, 0.14792899408284024, 0.4319526627218935, 0.25443786982248523, 0.05917159763313609, 0.05917159763313609, 0.05917159763313609, 0.05917159763313609, 0.05917159763313609, 0.10059171597633136, 0.08284023668639054, 0.08284023668639054, 0.09467455621301775, 0.10650887573964497, 0.10059171597633136, 0.10650887573964497, 0.10650887573964497, 0.13609467455621302, 0.27218934911242604], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4094.gap.json b/pfam_gap_rates/DUF4094.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b2be837bd2f418f0345499e03e13be8a9e4e997f
--- /dev/null
+++ b/pfam_gap_rates/DUF4094.gap.json
@@ -0,0 +1 @@
+{"family": "DUF4094", "n_seqs": 245, "length": 120, "gap_rates": [0.4530612244897959, 0.22448979591836735, 0.1306122448979592, 0.09795918367346938, 0.07755102040816327, 0.06938775510204082, 0.06938775510204082, 0.0653061224489796, 0.0653061224489796, 0.0653061224489796, 0.0653061224489796, 0.0653061224489796, 0.0653061224489796, 0.0653061224489796, 0.0653061224489796, 0.0653061224489796, 0.061224489795918366, 0.0653061224489796, 0.061224489795918366, 0.05714285714285714, 0.05714285714285714, 0.07755102040816327, 0.044897959183673466, 0.0326530612244898, 0.2816326530612245, 0.27755102040816326, 0.2857142857142857, 0.4, 0.726530612244898, 0.8734693877551021, 0.43673469387755104, 0.3877551020408163, 0.3142857142857143, 0.4122448979591837, 0.4204081632653061, 0.3795918367346939, 0.363265306122449, 0.34285714285714286, 0.49387755102040815, 0.3142857142857143, 0.5551020408163265, 0.9102040816326531, 0.9306122448979591, 0.8612244897959184, 0.39183673469387753, 0.2857142857142857, 0.27755102040816326, 0.27755102040816326, 0.27755102040816326, 0.27755102040816326, 0.9102040816326531, 0.2612244897959184, 0.24081632653061225, 0.9387755102040817, 0.22857142857142856, 0.2163265306122449, 0.2163265306122449, 0.22448979591836735, 0.2653061224489796, 0.6938775510204082, 0.9387755102040817, 0.8938775510204081, 0.5918367346938775, 0.0326530612244898, 0.05714285714285714, 0.05714285714285714, 0.08979591836734693, 0.08163265306122448, 0.04897959183673469, 0.6938775510204082, 0.9469387755102041, 0.8163265306122449, 0.6408163265306123, 0.036734693877551024, 0.17959183673469387, 0.0326530612244898, 0.02857142857142857, 0.02040816326530612, 0.024489795918367346, 0.7877551020408163, 0.07755102040816327, 0.07755102040816327, 0.036734693877551024, 0.02857142857142857, 0.02857142857142857, 0.02857142857142857, 0.0326530612244898, 0.0326530612244898, 0.02857142857142857, 0.02857142857142857, 0.7877551020408163, 0.8, 0.7877551020408163, 0.02857142857142857, 0.036734693877551024, 0.8081632653061225, 0.8081632653061225, 0.8244897959183674, 0.8244897959183674, 0.8244897959183674, 0.8081632653061225, 0.8081632653061225, 0.8081632653061225, 0.036734693877551024, 0.036734693877551024, 0.036734693877551024, 0.036734693877551024, 0.036734693877551024, 0.036734693877551024, 0.036734693877551024, 0.04081632653061224, 0.04081632653061224, 0.04081632653061224, 0.04081632653061224, 0.04081632653061224, 0.04897959183673469, 0.05714285714285714, 0.06938775510204082, 0.08979591836734693, 0.6775510204081633], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4107.gap.json b/pfam_gap_rates/DUF4107.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..7e0ede4d09919a240b7a55a08849626bb069eed4
--- /dev/null
+++ b/pfam_gap_rates/DUF4107.gap.json
@@ -0,0 +1 @@
+{"family": "DUF4107", "n_seqs": 583, "length": 153, "gap_rates": [0.27615780445969124, 0.2367066895368782, 0.241852487135506, 0.241852487135506, 0.9365351629502573, 0.9279588336192109, 0.9279588336192109, 0.2058319039451115, 0.2058319039451115, 0.2058319039451115, 0.2058319039451115, 0.2058319039451115, 0.20411663807890223, 0.14408233276157806, 0.14408233276157806, 0.14065180102915953, 0.14065180102915953, 0.13893653516295026, 0.13550600343053174, 0.13550600343053174, 0.13550600343053174, 0.13036020583190394, 0.12864493996569468, 0.12864493996569468, 0.1269296740994854, 0.1269296740994854, 0.1269296740994854, 0.1269296740994854, 0.12178387650085763, 0.11492281303602059, 0.11320754716981132, 0.11149228130360206, 0.10806174957118353, 0.10634648370497427, 0.10463121783876501, 0.10291595197255575, 0.10120068610634649, 0.10291595197255575, 0.10634648370497427, 0.10634648370497427, 0.10634648370497427, 0.10463121783876501, 0.1509433962264151, 0.1509433962264151, 0.1509433962264151, 0.10463121783876501, 0.10463121783876501, 0.10463121783876501, 0.10463121783876501, 0.09948542024013722, 0.09948542024013722, 0.09605488850771869, 0.09605488850771869, 0.09605488850771869, 0.09605488850771869, 0.09605488850771869, 0.08747855917667238, 0.08576329331046312, 0.08576329331046312, 0.08576329331046312, 0.08747855917667238, 0.08747855917667238, 0.08747855917667238, 0.08747855917667238, 0.08747855917667238, 0.08747855917667238, 0.08747855917667238, 0.08747855917667238, 0.08747855917667238, 0.08747855917667238, 0.08747855917667238, 0.08747855917667238, 0.08919382504288165, 0.08919382504288165, 0.08919382504288165, 0.08919382504288165, 0.09605488850771869, 0.04974271012006861, 0.051457975986277875, 0.05317324185248713, 0.0548885077186964, 0.0548885077186964, 0.051457975986277875, 0.04974271012006861, 0.04974271012006861, 0.051457975986277875, 0.0548885077186964, 0.058319039451114926, 0.058319039451114926, 0.058319039451114926, 0.060034305317324184, 0.060034305317324184, 0.20926243567753003, 0.2006861063464837, 0.2006861063464837, 0.19897084048027444, 0.1680960548885077, 0.0823327615780446, 0.0823327615780446, 0.09433962264150944, 0.08576329331046312, 0.10120068610634649, 0.8953687821612349, 0.8936535162950258, 0.8061749571183533, 0.08919382504288165, 0.08919382504288165, 0.08919382504288165, 0.08919382504288165, 0.09777015437392796, 0.09948542024013722, 0.1269296740994854, 0.09090909090909091, 0.08919382504288165, 0.08404802744425385, 0.12006861063464837, 0.12178387650085763, 0.12521440823327615, 0.13036020583190394, 0.09262435677530018, 0.09262435677530018, 0.09262435677530018, 0.09605488850771869, 0.09605488850771869, 0.09777015437392796, 0.10634648370497427, 0.1097770154373928, 0.11492281303602059, 0.11492281303602059, 0.12006861063464837, 0.12006861063464837, 0.12006861063464837, 0.12178387650085763, 0.12178387650085763, 0.12521440823327615, 0.12521440823327615, 0.1269296740994854, 0.1269296740994854, 0.13036020583190394, 0.13550600343053174, 0.14408233276157806, 0.14408233276157806, 0.14408233276157806, 0.14922813036020582, 0.1509433962264151, 0.1680960548885077, 0.1680960548885077, 0.16981132075471697, 0.17495711835334476, 0.20754716981132076, 0.20754716981132076, 0.21269296740994853, 0.22298456260720412], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4127.gap.json b/pfam_gap_rates/DUF4127.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..5fb138c398bad004b76cfbb3188265deb2678427
--- /dev/null
+++ b/pfam_gap_rates/DUF4127.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4134.gap.json b/pfam_gap_rates/DUF4134.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..dac82ae2b904befea06acf5636b53778da3b6c0d
--- /dev/null
+++ b/pfam_gap_rates/DUF4134.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4136.gap.json b/pfam_gap_rates/DUF4136.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a014cbd2130d193d9bc2222e170b75e1dfa9d852
--- /dev/null
+++ b/pfam_gap_rates/DUF4136.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4138.gap.json b/pfam_gap_rates/DUF4138.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..5bf7b31c7787866f3c7b6afd8d3c09219b6655b2
--- /dev/null
+++ b/pfam_gap_rates/DUF4138.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4162.gap.json b/pfam_gap_rates/DUF4162.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c016e30f7cf418c9b2b1dc7fb4aa82d47a26c9f1
--- /dev/null
+++ b/pfam_gap_rates/DUF4162.gap.json
@@ -0,0 +1 @@
+{"family": "DUF4162", "n_seqs": 1529, "length": 107, "gap_rates": [0.16154349247874428, 0.11903204708960105, 0.07717462393721386, 0.06736429038587312, 0.05755395683453238, 0.04708960104643558, 0.04381948986265533, 0.040549378678875085, 0.040549378678875085, 0.06932635709614127, 0.8620013080444735, 0.03858731196860693, 0.032701111837802485, 0.029431000654022238, 0.027468933943754086, 0.02223675604970569, 0.01765860039241334, 0.9313276651406148, 0.020928711576193592, 0.014388489208633094, 0.29038587311968606, 0.6121648136036625, 0.8266841072596468, 0.9117069980379333, 0.7338129496402878, 0.5114453891432309, 0.13603662524525834, 0.015042511445389144, 0.052321778940483975, 0.8901242642249837, 0.8122956180510137, 0.04251144538914323, 0.032047089601046436, 0.020274689339437543, 0.025506867233485938, 0.025506867233485938, 0.02485284499672989, 0.007848266841072597, 0.8646173969914978, 0.9143230869849575, 0.9437540876389797, 0.8875081752779594, 0.8332243296272073, 0.007194244604316547, 0.007848266841072597, 0.7547416612164813, 0.004578155657292348, 0.0032701111837802484, 0.0032701111837802484, 0.002616088947024199, 0.8587311968606932, 0.9437540876389797, 0.9097449313276651, 0.8129496402877698, 0.0006540222367560497, 0.01831262262916939, 0.02419882275997384, 0.002616088947024199, 0.8737737083060824, 0.934597776324395, 0.7521255722694572, 0.007848266841072597, 0.004578155657292348, 0.0013080444735120995, 0.0006540222367560497, 0.0, 0.0, 0.0, 0.0, 0.0032701111837802484, 0.5565729234793984, 0.07782864617396991, 0.013080444735120994, 0.002616088947024199, 0.0, 0.0006540222367560497, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.37737083060824067, 0.09287115761935906, 0.02877697841726619, 0.002616088947024199, 0.0006540222367560497, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0006540222367560497, 0.0006540222367560497, 0.001962066710268149, 0.001962066710268149, 0.005232177894048398, 0.007194244604316547, 0.03989535644211903, 0.1471550032701112, 0.5461085676913014], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4167.gap.json b/pfam_gap_rates/DUF4167.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..435b3987c75c02af009d5c3294a79d6a07fd5395
--- /dev/null
+++ b/pfam_gap_rates/DUF4167.gap.json
@@ -0,0 +1 @@
+{"family": "DUF4167", "n_seqs": 180, "length": 85, "gap_rates": [0.5222222222222223, 0.45555555555555555, 0.35555555555555557, 0.32222222222222224, 0.29444444444444445, 0.2777777777777778, 0.2611111111111111, 0.2833333333333333, 0.35, 0.2833333333333333, 0.2222222222222222, 0.2111111111111111, 0.16111111111111112, 0.7833333333333333, 0.9055555555555556, 0.9388888888888889, 0.8277777777777777, 0.6666666666666666, 0.15555555555555556, 0.1388888888888889, 0.12222222222222222, 0.6, 0.9222222222222223, 0.9333333333333333, 0.6277777777777778, 0.5722222222222222, 0.1111111111111111, 0.1111111111111111, 0.1, 0.09444444444444444, 0.09444444444444444, 0.08333333333333333, 0.08333333333333333, 0.07777777777777778, 0.06666666666666667, 0.06666666666666667, 0.05, 0.05, 0.03888888888888889, 0.03888888888888889, 0.03888888888888889, 0.03888888888888889, 0.03888888888888889, 0.03333333333333333, 0.027777777777777776, 0.022222222222222223, 0.011111111111111112, 0.011111111111111112, 0.011111111111111112, 0.016666666666666666, 0.005555555555555556, 0.005555555555555556, 0.005555555555555556, 0.005555555555555556, 0.005555555555555556, 0.005555555555555556, 0.011111111111111112, 0.011111111111111112, 0.005555555555555556, 0.011111111111111112, 0.005555555555555556, 0.005555555555555556, 0.005555555555555556, 0.005555555555555556, 0.005555555555555556, 0.005555555555555556, 0.005555555555555556, 0.005555555555555556, 0.005555555555555556, 0.005555555555555556, 0.005555555555555556, 0.005555555555555556, 0.005555555555555556, 0.005555555555555556, 0.005555555555555556, 0.005555555555555556, 0.005555555555555556, 0.005555555555555556, 0.005555555555555556, 0.011111111111111112, 0.016666666666666666, 0.03333333333333333, 0.10555555555555556, 0.2388888888888889, 0.8277777777777777], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4187.gap.json b/pfam_gap_rates/DUF4187.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a6a71d6c797ff75eee3aebddc0a60a24b688caf1
--- /dev/null
+++ b/pfam_gap_rates/DUF4187.gap.json
@@ -0,0 +1 @@
+{"family": "DUF4187", "n_seqs": 306, "length": 54, "gap_rates": [0.7450980392156863, 0.3660130718954248, 0.2679738562091503, 0.17320261437908496, 0.11764705882352941, 0.0915032679738562, 0.07516339869281045, 0.06862745098039216, 0.042483660130718956, 0.026143790849673203, 0.006535947712418301, 0.0032679738562091504, 0.0032679738562091504, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.006535947712418301, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.013071895424836602, 0.013071895424836602, 0.016339869281045753, 0.0196078431372549, 0.026143790849673203, 0.026143790849673203, 0.2222222222222222, 0.23202614379084968, 0.02287581699346405, 0.02287581699346405, 0.02287581699346405, 0.07516339869281045, 0.0915032679738562, 0.2908496732026144, 0.29411764705882354, 0.30392156862745096, 0.30392156862745096, 0.30392156862745096, 0.30392156862745096], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4190.gap.json b/pfam_gap_rates/DUF4190.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..8c3d5942c81e95a2c08c6b56aa9772c0c695d724
--- /dev/null
+++ b/pfam_gap_rates/DUF4190.gap.json
@@ -0,0 +1 @@
+{"family": "DUF4190", "n_seqs": 357, "length": 71, "gap_rates": [0.48739495798319327, 0.1792717086834734, 0.14565826330532214, 0.11764705882352941, 0.11204481792717087, 0.10084033613445378, 0.07282913165266107, 0.06162464985994398, 0.03081232492997199, 0.0196078431372549, 0.022408963585434174, 0.03081232492997199, 0.16526610644257703, 0.16526610644257703, 0.16806722689075632, 0.6750700280112045, 0.7815126050420168, 0.9327731092436975, 0.8319327731092437, 0.7759103641456583, 0.6190476190476191, 0.28851540616246496, 0.44537815126050423, 0.17647058823529413, 0.08403361344537816, 0.014005602240896359, 0.008403361344537815, 0.008403361344537815, 0.0028011204481792717, 0.0028011204481792717, 0.0028011204481792717, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.07282913165266107, 0.07282913165266107, 0.09523809523809523, 0.0896358543417367, 0.803921568627451, 0.7535014005602241, 0.03361344537815126, 0.0196078431372549, 0.0056022408963585435, 0.0, 0.0, 0.0028011204481792717, 0.0028011204481792717, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0028011204481792717, 0.0028011204481792717, 0.0028011204481792717, 0.0028011204481792717, 0.011204481792717087, 0.025210084033613446, 0.06442577030812324, 0.1792717086834734, 0.7478991596638656], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4198.gap.json b/pfam_gap_rates/DUF4198.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..6d6d72cfdc55505c57ad8e4f9d4c9ca3708b5b8c
--- /dev/null
+++ b/pfam_gap_rates/DUF4198.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4211.gap.json b/pfam_gap_rates/DUF4211.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..77e764531aa7668660e268f1733134793f4d2eda
--- /dev/null
+++ b/pfam_gap_rates/DUF4211.gap.json
@@ -0,0 +1 @@
+{"family": "DUF4211", "n_seqs": 190, "length": 175, "gap_rates": [0.5789473684210527, 0.45263157894736844, 0.4421052631578947, 0.4473684210526316, 0.4105263157894737, 0.3631578947368421, 0.3631578947368421, 0.3631578947368421, 0.5157894736842106, 0.5, 0.9421052631578948, 0.8947368421052632, 0.4842105263157895, 0.47368421052631576, 0.45789473684210524, 0.4368421052631579, 0.3684210526315789, 0.8473684210526315, 0.8894736842105263, 0.9315789473684211, 0.9421052631578948, 0.9105263157894737, 0.8631578947368421, 0.8052631578947368, 0.34210526315789475, 0.41578947368421054, 0.4105263157894737, 0.5368421052631579, 0.531578947368421, 0.39473684210526316, 0.3105263157894737, 0.23157894736842105, 0.20526315789473684, 0.2, 0.18947368421052632, 0.1631578947368421, 0.8473684210526315, 0.9473684210526315, 0.8789473684210526, 0.8315789473684211, 0.1736842105263158, 0.21052631578947367, 0.15263157894736842, 0.10526315789473684, 0.06315789473684211, 0.04736842105263158, 0.042105263157894736, 0.031578947368421054, 0.03684210526315789, 0.031578947368421054, 0.02631578947368421, 0.02631578947368421, 0.02631578947368421, 0.02631578947368421, 0.02631578947368421, 0.02631578947368421, 0.02631578947368421, 0.02631578947368421, 0.02631578947368421, 0.02631578947368421, 0.02631578947368421, 0.02631578947368421, 0.02631578947368421, 0.02631578947368421, 0.02631578947368421, 0.02631578947368421, 0.021052631578947368, 0.8736842105263158, 0.8157894736842105, 0.37894736842105264, 0.4, 0.4, 0.4052631578947368, 0.11052631578947368, 0.3368421052631579, 0.06842105263157895, 0.03684210526315789, 0.05263157894736842, 0.021052631578947368, 0.7842105263157895, 0.9, 0.9263157894736842, 0.9368421052631579, 0.9368421052631579, 0.9263157894736842, 0.7947368421052632, 0.7842105263157895, 0.015789473684210527, 0.015789473684210527, 0.010526315789473684, 0.005263157894736842, 0.005263157894736842, 0.0, 0.0, 0.0, 0.0, 0.0, 0.005263157894736842, 0.005263157894736842, 0.005263157894736842, 0.9105263157894737, 0.0, 0.0, 0.0, 0.005263157894736842, 0.005263157894736842, 0.010526315789473684, 0.015789473684210527, 0.06315789473684211, 0.010526315789473684, 0.010526315789473684, 0.015789473684210527, 0.015789473684210527, 0.015789473684210527, 0.015789473684210527, 0.015789473684210527, 0.010526315789473684, 0.010526315789473684, 0.015789473684210527, 0.021052631578947368, 0.02631578947368421, 0.031578947368421054, 0.031578947368421054, 0.031578947368421054, 0.03684210526315789, 0.031578947368421054, 0.031578947368421054, 0.031578947368421054, 0.031578947368421054, 0.02631578947368421, 0.02631578947368421, 0.09473684210526316, 0.1, 0.10526315789473684, 0.11052631578947368, 0.11052631578947368, 0.11578947368421053, 0.21052631578947367, 0.6736842105263158, 0.8421052631578947, 0.9210526315789473, 0.9473684210526315, 0.8894736842105263, 0.7421052631578947, 0.6421052631578947, 0.5421052631578948, 0.12631578947368421, 0.11578947368421053, 0.11052631578947368, 0.10526315789473684, 0.11052631578947368, 0.11052631578947368, 0.11052631578947368, 0.11578947368421053, 0.07368421052631578, 0.07894736842105263, 0.08947368421052632, 0.07368421052631578, 0.12631578947368421, 0.3263157894736842, 0.10526315789473684, 0.05789473684210526, 0.07894736842105263, 0.08421052631578947, 0.08421052631578947, 0.09473684210526316, 0.1, 0.11052631578947368, 0.11578947368421053, 0.12105263157894737, 0.12631578947368421, 0.1368421052631579, 0.22105263157894736, 0.2736842105263158, 0.35789473684210527], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4214.gap.json b/pfam_gap_rates/DUF4214.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..13585f034c8d474f8027f33f9ad8e3e57b3bec14
--- /dev/null
+++ b/pfam_gap_rates/DUF4214.gap.json
@@ -0,0 +1 @@
+{"family": "DUF4214", "n_seqs": 403, "length": 71, "gap_rates": [0.7965260545905707, 0.7444168734491315, 0.6401985111662531, 0.6029776674937966, 0.598014888337469, 0.5806451612903226, 0.5707196029776674, 0.5607940446650124, 0.5459057071960298, 0.5359801488833746, 0.533498759305211, 0.5260545905707196, 0.5260545905707196, 0.6674937965260546, 0.6451612903225806, 0.6352357320099256, 0.6550868486352357, 0.4119106699751861, 0.36228287841191065, 0.2977667493796526, 0.21836228287841192, 0.18858560794044665, 0.1687344913151365, 0.05707196029776675, 0.04714640198511166, 0.02729528535980149, 0.004962779156327543, 0.004962779156327543, 0.004962779156327543, 0.0024813895781637717, 0.0024813895781637717, 0.0, 0.0, 0.0024813895781637717, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.004962779156327543, 0.01240694789081886, 0.019851116625310174, 0.017369727047146403, 0.017369727047146403, 0.02729528535980149, 0.02977667493796526, 0.5707196029776674, 0.05707196029776675, 0.052109181141439205, 0.052109181141439205, 0.04962779156327544, 0.04962779156327544, 0.052109181141439205, 0.062034739454094295, 0.06947890818858561, 0.07692307692307693, 0.09925558312655088, 0.12903225806451613, 0.1588089330024814, 0.17369727047146402, 0.18362282878411912, 0.22580645161290322, 0.29280397022332505, 0.45161290322580644, 0.7096774193548387], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4231.gap.json b/pfam_gap_rates/DUF4231.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e1dc98be05653408c523507a09e32722a307181b
--- /dev/null
+++ b/pfam_gap_rates/DUF4231.gap.json
@@ -0,0 +1 @@
+{"family": "DUF4231", "n_seqs": 127, "length": 123, "gap_rates": [0.8582677165354331, 0.6456692913385826, 0.4330708661417323, 0.3543307086614173, 0.3228346456692913, 0.25984251968503935, 0.2283464566929134, 0.2204724409448819, 0.18110236220472442, 0.14960629921259844, 0.14173228346456693, 0.12598425196850394, 0.11023622047244094, 0.09448818897637795, 0.08661417322834646, 0.07874015748031496, 0.07086614173228346, 0.05511811023622047, 0.14960629921259844, 0.047244094488188976, 0.047244094488188976, 0.047244094488188976, 0.047244094488188976, 0.047244094488188976, 0.047244094488188976, 0.03937007874015748, 0.03937007874015748, 0.03937007874015748, 0.03937007874015748, 0.03937007874015748, 0.03937007874015748, 0.03937007874015748, 0.03937007874015748, 0.03937007874015748, 0.03937007874015748, 0.03937007874015748, 0.6692913385826772, 0.7952755905511811, 0.8582677165354331, 0.8740157480314961, 0.8976377952755905, 0.9133858267716536, 0.9133858267716536, 0.9133858267716536, 0.9291338582677166, 0.937007874015748, 0.9133858267716536, 0.9133858267716536, 0.9133858267716536, 0.8976377952755905, 0.8818897637795275, 0.8740157480314961, 0.8267716535433071, 0.7637795275590551, 0.5039370078740157, 0.41732283464566927, 0.4251968503937008, 0.28346456692913385, 0.2283464566929134, 0.1889763779527559, 0.14173228346456693, 0.03937007874015748, 0.031496062992125984, 0.03937007874015748, 0.031496062992125984, 0.047244094488188976, 0.031496062992125984, 0.031496062992125984, 0.031496062992125984, 0.031496062992125984, 0.031496062992125984, 0.023622047244094488, 0.023622047244094488, 0.023622047244094488, 0.023622047244094488, 0.015748031496062992, 0.015748031496062992, 0.015748031496062992, 0.015748031496062992, 0.015748031496062992, 0.015748031496062992, 0.015748031496062992, 0.015748031496062992, 0.015748031496062992, 0.007874015748031496, 0.007874015748031496, 0.007874015748031496, 0.007874015748031496, 0.007874015748031496, 0.007874015748031496, 0.023622047244094488, 0.015748031496062992, 0.023622047244094488, 0.031496062992125984, 0.05511811023622047, 0.07086614173228346, 0.07086614173228346, 0.07086614173228346, 0.07874015748031496, 0.08661417322834646, 0.08661417322834646, 0.09448818897637795, 0.11023622047244094, 0.11811023622047244, 0.12598425196850394, 0.13385826771653545, 0.14960629921259844, 0.15748031496062992, 0.16535433070866143, 0.16535433070866143, 0.16535433070866143, 0.16535433070866143, 0.1732283464566929, 0.1732283464566929, 0.1968503937007874, 0.2047244094488189, 0.23622047244094488, 0.2440944881889764, 0.28346456692913385, 0.33858267716535434, 0.48031496062992124, 0.6141732283464567, 0.7559055118110236], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4234.gap.json b/pfam_gap_rates/DUF4234.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..917bb2c82370afeae91635cdecf4e0c3e70cf779
--- /dev/null
+++ b/pfam_gap_rates/DUF4234.gap.json
@@ -0,0 +1 @@
+{"family": "DUF4234", "n_seqs": 204, "length": 107, "gap_rates": [0.5686274509803921, 0.39705882352941174, 0.27450980392156865, 0.1568627450980392, 0.05392156862745098, 0.024509803921568627, 0.014705882352941176, 0.004901960784313725, 0.004901960784313725, 0.004901960784313725, 0.004901960784313725, 0.004901960784313725, 0.004901960784313725, 0.004901960784313725, 0.004901960784313725, 0.004901960784313725, 0.004901960784313725, 0.004901960784313725, 0.004901960784313725, 0.004901960784313725, 0.004901960784313725, 0.004901960784313725, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.004901960784313725, 0.004901960784313725, 0.014705882352941176, 0.024509803921568627, 0.024509803921568627, 0.6372549019607843, 0.9117647058823529, 0.9411764705882353, 0.9313725490196079, 0.7647058823529411, 0.553921568627451, 0.37745098039215685, 0.21568627450980393, 0.15196078431372548, 0.12745098039215685, 0.12745098039215685, 0.11274509803921569, 0.11764705882352941, 0.14215686274509803, 0.14705882352941177, 0.8970588235294118, 0.9215686274509803, 0.9313725490196079, 0.9068627450980392, 0.8823529411764706, 0.6862745098039216, 0.21568627450980393, 0.20588235294117646, 0.21568627450980393, 0.20098039215686275, 0.1715686274509804, 0.8921568627450981, 0.9019607843137255, 0.9019607843137255, 0.9068627450980392, 0.9068627450980392, 0.9068627450980392, 0.9068627450980392, 0.9068627450980392, 0.9166666666666666, 0.9264705882352942, 0.9313725490196079, 0.9362745098039216, 0.946078431372549, 0.946078431372549, 0.9362745098039216, 0.9362745098039216, 0.9264705882352942, 0.9215686274509803, 0.9068627450980392, 0.9068627450980392, 0.9068627450980392, 0.9068627450980392, 0.9068627450980392, 0.9068627450980392, 0.9019607843137255, 0.8970588235294118, 0.8872549019607843, 0.18137254901960784, 0.19117647058823528, 0.19117647058823528, 0.18627450980392157, 0.21568627450980393, 0.22058823529411764, 0.24019607843137256, 0.23039215686274508, 0.25, 0.2696078431372549, 0.29901960784313725, 0.31862745098039214, 0.3333333333333333, 0.35294117647058826, 0.39215686274509803, 0.4068627450980392, 0.4411764705882353, 0.45588235294117646, 0.5245098039215687], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4237.gap.json b/pfam_gap_rates/DUF4237.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..60a9aea737ab4833298fc6753e80533e8f758809
--- /dev/null
+++ b/pfam_gap_rates/DUF4237.gap.json
@@ -0,0 +1 @@
+{"family": "DUF4237", "n_seqs": 124, "length": 125, "gap_rates": [0.5483870967741935, 0.1693548387096774, 0.1532258064516129, 0.12096774193548387, 0.08064516129032258, 0.07258064516129033, 0.04838709677419355, 0.04838709677419355, 0.04838709677419355, 0.04032258064516129, 0.04032258064516129, 0.04032258064516129, 0.04032258064516129, 0.9354838709677419, 0.9354838709677419, 0.9435483870967742, 0.9435483870967742, 0.9435483870967742, 0.9354838709677419, 0.9354838709677419, 0.9354838709677419, 0.04032258064516129, 0.04032258064516129, 0.03225806451612903, 0.03225806451612903, 0.03225806451612903, 0.03225806451612903, 0.03225806451612903, 0.03225806451612903, 0.8951612903225806, 0.8951612903225806, 0.03225806451612903, 0.03225806451612903, 0.03225806451612903, 0.04032258064516129, 0.03225806451612903, 0.9274193548387096, 0.9193548387096774, 0.03225806451612903, 0.03225806451612903, 0.024193548387096774, 0.024193548387096774, 0.024193548387096774, 0.024193548387096774, 0.024193548387096774, 0.024193548387096774, 0.024193548387096774, 0.03225806451612903, 0.08870967741935484, 0.6612903225806451, 0.6693548387096774, 0.6774193548387096, 0.8306451612903226, 0.9435483870967742, 0.8790322580645161, 0.7016129032258065, 0.6693548387096774, 0.6693548387096774, 0.6209677419354839, 0.016129032258064516, 0.008064516129032258, 0.008064516129032258, 0.008064516129032258, 0.008064516129032258, 0.008064516129032258, 0.008064516129032258, 0.008064516129032258, 0.024193548387096774, 0.016129032258064516, 0.016129032258064516, 0.008064516129032258, 0.008064516129032258, 0.8951612903225806, 0.9274193548387096, 0.9193548387096774, 0.8306451612903226, 0.024193548387096774, 0.024193548387096774, 0.024193548387096774, 0.024193548387096774, 0.016129032258064516, 0.016129032258064516, 0.016129032258064516, 0.016129032258064516, 0.016129032258064516, 0.016129032258064516, 0.024193548387096774, 0.056451612903225805, 0.03225806451612903, 0.03225806451612903, 0.03225806451612903, 0.03225806451612903, 0.03225806451612903, 0.03225806451612903, 0.03225806451612903, 0.03225806451612903, 0.03225806451612903, 0.06451612903225806, 0.7983870967741935, 0.8548387096774194, 0.8548387096774194, 0.8870967741935484, 0.9354838709677419, 0.8548387096774194, 0.8548387096774194, 0.7983870967741935, 0.7983870967741935, 0.056451612903225805, 0.12903225806451613, 0.717741935483871, 0.6854838709677419, 0.6451612903225806, 0.08064516129032258, 0.08064516129032258, 0.08064516129032258, 0.11290322580645161, 0.11290322580645161, 0.12096774193548387, 0.12096774193548387, 0.11290322580645161, 0.12096774193548387, 0.12096774193548387, 0.14516129032258066, 0.2661290322580645, 0.5483870967741935], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4259.gap.json b/pfam_gap_rates/DUF4259.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a0204d30f3e435af3c908261e71a1046b357722c
--- /dev/null
+++ b/pfam_gap_rates/DUF4259.gap.json
@@ -0,0 +1 @@
+{"family": "DUF4259", "n_seqs": 110, "length": 156, "gap_rates": [0.2, 0.045454545454545456, 0.03636363636363636, 0.03636363636363636, 0.02727272727272727, 0.02727272727272727, 0.02727272727272727, 0.02727272727272727, 0.02727272727272727, 0.02727272727272727, 0.02727272727272727, 0.02727272727272727, 0.02727272727272727, 0.02727272727272727, 0.02727272727272727, 0.02727272727272727, 0.02727272727272727, 0.02727272727272727, 0.02727272727272727, 0.02727272727272727, 0.02727272727272727, 0.03636363636363636, 0.03636363636363636, 0.36363636363636365, 0.43636363636363634, 0.5181818181818182, 0.33636363636363636, 0.32727272727272727, 0.2818181818181818, 0.8818181818181818, 0.8909090909090909, 0.8727272727272727, 0.08181818181818182, 0.05454545454545454, 0.045454545454545456, 0.045454545454545456, 0.03636363636363636, 0.03636363636363636, 0.03636363636363636, 0.03636363636363636, 0.03636363636363636, 0.8181818181818182, 0.4, 0.37272727272727274, 0.4, 0.22727272727272727, 0.07272727272727272, 0.07272727272727272, 0.09090909090909091, 0.10909090909090909, 0.09090909090909091, 0.08181818181818182, 0.07272727272727272, 0.08181818181818182, 0.045454545454545456, 0.045454545454545456, 0.045454545454545456, 0.06363636363636363, 0.06363636363636363, 0.06363636363636363, 0.03636363636363636, 0.03636363636363636, 0.03636363636363636, 0.03636363636363636, 0.03636363636363636, 0.03636363636363636, 0.03636363636363636, 0.045454545454545456, 0.03636363636363636, 0.07272727272727272, 0.05454545454545454, 0.045454545454545456, 0.03636363636363636, 0.03636363636363636, 0.03636363636363636, 0.03636363636363636, 0.24545454545454545, 0.36363636363636365, 0.4818181818181818, 0.6363636363636364, 0.6181818181818182, 0.6181818181818182, 0.6545454545454545, 0.6545454545454545, 0.8181818181818182, 0.6727272727272727, 0.8909090909090909, 0.8818181818181818, 0.14545454545454545, 0.11818181818181818, 0.10909090909090909, 0.35454545454545455, 0.2818181818181818, 0.2727272727272727, 0.2727272727272727, 0.24545454545454545, 0.22727272727272727, 0.23636363636363636, 0.20909090909090908, 0.21818181818181817, 0.24545454545454545, 0.2545454545454545, 0.35454545454545455, 0.33636363636363636, 0.2818181818181818, 0.45454545454545453, 0.8818181818181818, 0.9090909090909091, 0.9272727272727272, 0.9363636363636364, 0.9363636363636364, 0.9181818181818182, 0.9, 0.8818181818181818, 0.06363636363636363, 0.07272727272727272, 0.08181818181818182, 0.08181818181818182, 0.08181818181818182, 0.08181818181818182, 0.08181818181818182, 0.08181818181818182, 0.08181818181818182, 0.08181818181818182, 0.08181818181818182, 0.08181818181818182, 0.09090909090909091, 0.10909090909090909, 0.10909090909090909, 0.11818181818181818, 0.11818181818181818, 0.2909090909090909, 0.8, 0.7, 0.14545454545454545, 0.14545454545454545, 0.15454545454545454, 0.15454545454545454, 0.17272727272727273, 0.18181818181818182, 0.19090909090909092, 0.19090909090909092, 0.19090909090909092, 0.19090909090909092, 0.8727272727272727, 0.8454545454545455, 0.24545454545454545, 0.2, 0.23636363636363636, 0.8454545454545455, 0.2727272727272727, 0.2818181818181818, 0.3090909090909091, 0.33636363636363636, 0.38181818181818183, 0.9454545454545454], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4287.gap.json b/pfam_gap_rates/DUF4287.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..7ddc33990b465cfc06da27eee40b835878cc12f3
--- /dev/null
+++ b/pfam_gap_rates/DUF4287.gap.json
@@ -0,0 +1 @@
+{"family": "DUF4287", "n_seqs": 200, "length": 67, "gap_rates": [0.265, 0.21, 0.105, 0.065, 0.06, 0.055, 0.025, 0.025, 0.015, 0.015, 0.005, 0.005, 0.005, 0.005, 0.005, 0.005, 0.005, 0.005, 0.005, 0.005, 0.005, 0.005, 0.005, 0.005, 0.005, 0.005, 0.005, 0.005, 0.005, 0.005, 0.69, 0.935, 0.935, 0.94, 0.94, 0.935, 0.805, 0.655, 0.49, 0.01, 0.005, 0.005, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.005, 0.0, 0.0, 0.0, 0.005, 0.01, 0.015, 0.03, 0.03, 0.03, 0.03, 0.035, 0.035, 0.035, 0.065, 0.08, 0.12, 0.32], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4294.gap.json b/pfam_gap_rates/DUF4294.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..9d9bf27d4337a9af26cb2fb775c904a282038009
--- /dev/null
+++ b/pfam_gap_rates/DUF4294.gap.json
@@ -0,0 +1 @@
+{"family": "DUF4294", "n_seqs": 119, "length": 159, "gap_rates": [0.33613445378151263, 0.226890756302521, 0.12605042016806722, 0.11764705882352941, 0.9243697478991597, 0.9243697478991597, 0.03361344537815126, 0.03361344537815126, 0.03361344537815126, 0.03361344537815126, 0.03361344537815126, 0.03361344537815126, 0.03361344537815126, 0.03361344537815126, 0.03361344537815126, 0.03361344537815126, 0.9243697478991597, 0.04201680672268908, 0.05042016806722689, 0.1092436974789916, 0.058823529411764705, 0.04201680672268908, 0.058823529411764705, 0.058823529411764705, 0.03361344537815126, 0.03361344537815126, 0.025210084033613446, 0.025210084033613446, 0.025210084033613446, 0.01680672268907563, 0.01680672268907563, 0.01680672268907563, 0.01680672268907563, 0.01680672268907563, 0.01680672268907563, 0.01680672268907563, 0.01680672268907563, 0.01680672268907563, 0.01680672268907563, 0.01680672268907563, 0.01680672268907563, 0.01680672268907563, 0.01680672268907563, 0.01680672268907563, 0.01680672268907563, 0.01680672268907563, 0.01680672268907563, 0.01680672268907563, 0.01680672268907563, 0.01680672268907563, 0.01680672268907563, 0.01680672268907563, 0.01680672268907563, 0.01680672268907563, 0.01680672268907563, 0.01680672268907563, 0.01680672268907563, 0.01680672268907563, 0.01680672268907563, 0.01680672268907563, 0.01680672268907563, 0.01680672268907563, 0.03361344537815126, 0.9495798319327731, 0.07563025210084033, 0.025210084033613446, 0.01680672268907563, 0.01680672268907563, 0.01680672268907563, 0.01680672268907563, 0.01680672268907563, 0.01680672268907563, 0.01680672268907563, 0.01680672268907563, 0.01680672268907563, 0.01680672268907563, 0.01680672268907563, 0.01680672268907563, 0.01680672268907563, 0.01680672268907563, 0.01680672268907563, 0.01680672268907563, 0.01680672268907563, 0.01680672268907563, 0.01680672268907563, 0.01680672268907563, 0.01680672268907563, 0.008403361344537815, 0.008403361344537815, 0.008403361344537815, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.1092436974789916, 0.6218487394957983, 0.6218487394957983, 0.03361344537815126, 0.008403361344537815, 0.008403361344537815, 0.008403361344537815, 0.008403361344537815, 0.008403361344537815, 0.008403361344537815, 0.008403361344537815, 0.19327731092436976, 0.8571428571428571], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4307.gap.json b/pfam_gap_rates/DUF4307.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d2105e5d9a0e9a1ec729a2d357159a8b7092c75d
--- /dev/null
+++ b/pfam_gap_rates/DUF4307.gap.json
@@ -0,0 +1 @@
+{"family": "DUF4307", "n_seqs": 179, "length": 115, "gap_rates": [0.8491620111731844, 0.4245810055865922, 0.2122905027932961, 0.1340782122905028, 0.08379888268156424, 0.05027932960893855, 0.0446927374301676, 0.0335195530726257, 0.027932960893854747, 0.0223463687150838, 0.01675977653631285, 0.00558659217877095, 0.00558659217877095, 0.00558659217877095, 0.00558659217877095, 0.00558659217877095, 0.00558659217877095, 0.00558659217877095, 0.00558659217877095, 0.00558659217877095, 0.00558659217877095, 0.0111731843575419, 0.0, 0.0, 0.0, 0.0, 0.00558659217877095, 0.5586592178770949, 0.0782122905027933, 0.0335195530726257, 0.00558659217877095, 0.00558659217877095, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.03910614525139665, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.6033519553072626, 0.0223463687150838, 0.0223463687150838, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0335195530726257, 0.0111731843575419, 0.0111731843575419, 0.9217877094972067, 0.9385474860335196, 0.8994413407821229, 0.2122905027932961, 0.05027932960893855, 0.05027932960893855, 0.027932960893854747, 0.0223463687150838, 0.00558659217877095, 0.01675977653631285, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.00558659217877095, 0.00558659217877095], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4314.gap.json b/pfam_gap_rates/DUF4314.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a5941d3d4addf93ea2ece3c1cf51bb9347b1b60b
--- /dev/null
+++ b/pfam_gap_rates/DUF4314.gap.json
@@ -0,0 +1 @@
+{"family": "DUF4314", "n_seqs": 119, "length": 68, "gap_rates": [0.17647058823529413, 0.1092436974789916, 0.08403361344537816, 0.07563025210084033, 0.06722689075630252, 0.06722689075630252, 0.06722689075630252, 0.06722689075630252, 0.06722689075630252, 0.06722689075630252, 0.06722689075630252, 0.058823529411764705, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.04201680672268908, 0.008403361344537815, 0.01680672268907563, 0.36134453781512604, 0.03361344537815126, 0.0, 0.008403361344537815, 0.008403361344537815, 0.0, 0.0, 0.0, 0.0, 0.0, 0.008403361344537815, 0.008403361344537815, 0.008403361344537815, 0.008403361344537815, 0.008403361344537815, 0.008403361344537815, 0.008403361344537815, 0.008403361344537815, 0.008403361344537815, 0.008403361344537815, 0.008403361344537815, 0.008403361344537815, 0.01680672268907563, 0.03361344537815126, 0.03361344537815126, 0.025210084033613446, 0.01680672268907563, 0.01680672268907563, 0.01680672268907563, 0.01680672268907563, 0.025210084033613446, 0.025210084033613446, 0.025210084033613446, 0.025210084033613446, 0.025210084033613446, 0.025210084033613446, 0.03361344537815126, 0.03361344537815126, 0.05042016806722689, 0.3697478991596639], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4339.gap.json b/pfam_gap_rates/DUF4339.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f2dab94fbff7fabe69b4964e3d6d187cbab2fc0c
--- /dev/null
+++ b/pfam_gap_rates/DUF4339.gap.json
@@ -0,0 +1 @@
+{"family": "DUF4339", "n_seqs": 527, "length": 48, "gap_rates": [0.19165085388994307, 0.058823529411764705, 0.04743833017077799, 0.03415559772296015, 0.9392789373814042, 0.018975332068311195, 0.8671726755218216, 0.020872865275142316, 0.013282732447817837, 0.937381404174573, 0.8045540796963947, 0.009487666034155597, 0.009487666034155597, 0.009487666034155597, 0.009487666034155597, 0.009487666034155597, 0.007590132827324478, 0.003795066413662239, 0.0018975332068311196, 0.0018975332068311196, 0.0, 0.0018975332068311196, 0.0018975332068311196, 0.0018975332068311196, 0.003795066413662239, 0.0777988614800759, 0.07969639468690702, 0.0777988614800759, 0.07020872865275142, 0.003795066413662239, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0018975332068311196, 0.0018975332068311196, 0.0018975332068311196, 0.003795066413662239, 0.0056925996204933585, 0.0056925996204933585, 0.011385199240986717, 0.024667931688804556, 0.026565464895635674, 0.16129032258064516, 0.3946869070208729], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4345.gap.json b/pfam_gap_rates/DUF4345.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a4be4b1b61015d7577577a34f2c6a997e755f37a
--- /dev/null
+++ b/pfam_gap_rates/DUF4345.gap.json
@@ -0,0 +1 @@
+{"family": "DUF4345", "n_seqs": 155, "length": 128, "gap_rates": [0.9225806451612903, 0.5612903225806452, 0.34838709677419355, 0.22580645161290322, 0.16774193548387098, 0.15483870967741936, 0.12258064516129032, 0.1032258064516129, 0.07741935483870968, 0.07096774193548387, 0.05806451612903226, 0.04516129032258064, 0.03870967741935484, 0.03870967741935484, 0.025806451612903226, 0.025806451612903226, 0.025806451612903226, 0.025806451612903226, 0.025806451612903226, 0.025806451612903226, 0.025806451612903226, 0.025806451612903226, 0.025806451612903226, 0.025806451612903226, 0.025806451612903226, 0.025806451612903226, 0.025806451612903226, 0.03225806451612903, 0.03870967741935484, 0.03870967741935484, 0.9032258064516129, 0.9354838709677419, 0.9354838709677419, 0.9354838709677419, 0.9354838709677419, 0.9225806451612903, 0.8064516129032258, 0.567741935483871, 0.25161290322580643, 0.1935483870967742, 0.13548387096774195, 0.07741935483870968, 0.06451612903225806, 0.1032258064516129, 0.05806451612903226, 0.025806451612903226, 0.025806451612903226, 0.025806451612903226, 0.025806451612903226, 0.025806451612903226, 0.025806451612903226, 0.025806451612903226, 0.025806451612903226, 0.025806451612903226, 0.03225806451612903, 0.025806451612903226, 0.025806451612903226, 0.025806451612903226, 0.01935483870967742, 0.5225806451612903, 0.01935483870967742, 0.012903225806451613, 0.012903225806451613, 0.012903225806451613, 0.012903225806451613, 0.01935483870967742, 0.012903225806451613, 0.025806451612903226, 0.025806451612903226, 0.025806451612903226, 0.03225806451612903, 0.01935483870967742, 0.025806451612903226, 0.025806451612903226, 0.3161290322580645, 0.2838709677419355, 0.18064516129032257, 0.16129032258064516, 0.1032258064516129, 0.01935483870967742, 0.012903225806451613, 0.0064516129032258064, 0.012903225806451613, 0.0064516129032258064, 0.0064516129032258064, 0.012903225806451613, 0.0064516129032258064, 0.0, 0.0, 0.0, 0.0, 0.0064516129032258064, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0064516129032258064, 0.01935483870967742, 0.012903225806451613, 0.8903225806451613, 0.01935483870967742, 0.012903225806451613, 0.012903225806451613, 0.08387096774193549, 0.025806451612903226, 0.01935483870967742, 0.01935483870967742, 0.01935483870967742, 0.01935483870967742, 0.01935483870967742, 0.01935483870967742, 0.025806451612903226, 0.025806451612903226, 0.025806451612903226, 0.025806451612903226, 0.025806451612903226, 0.025806451612903226, 0.03225806451612903, 0.05806451612903226, 0.07741935483870968, 0.14193548387096774, 0.27741935483870966, 0.47096774193548385, 0.7612903225806451], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4364.gap.json b/pfam_gap_rates/DUF4364.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b8cb146971a766c1ed3c69e84a040942f30d3cfc
--- /dev/null
+++ b/pfam_gap_rates/DUF4364.gap.json
@@ -0,0 +1 @@
+{"family": "DUF4364", "n_seqs": 247, "length": 163, "gap_rates": [0.26720647773279355, 0.048582995951417005, 0.03643724696356275, 0.03643724696356275, 0.03643724696356275, 0.03643724696356275, 0.03643724696356275, 0.02834008097165992, 0.02834008097165992, 0.02834008097165992, 0.02834008097165992, 0.02834008097165992, 0.024291497975708502, 0.04048582995951417, 0.024291497975708502, 0.024291497975708502, 0.024291497975708502, 0.024291497975708502, 0.024291497975708502, 0.024291497975708502, 0.024291497975708502, 0.024291497975708502, 0.024291497975708502, 0.024291497975708502, 0.024291497975708502, 0.024291497975708502, 0.024291497975708502, 0.024291497975708502, 0.02834008097165992, 0.024291497975708502, 0.024291497975708502, 0.024291497975708502, 0.024291497975708502, 0.020242914979757085, 0.020242914979757085, 0.020242914979757085, 0.020242914979757085, 0.020242914979757085, 0.020242914979757085, 0.020242914979757085, 0.020242914979757085, 0.020242914979757085, 0.020242914979757085, 0.024291497975708502, 0.020242914979757085, 0.016194331983805668, 0.016194331983805668, 0.016194331983805668, 0.016194331983805668, 0.016194331983805668, 0.020242914979757085, 0.17408906882591094, 0.9190283400809717, 0.1700404858299595, 0.1700404858299595, 0.08906882591093117, 0.020242914979757085, 0.020242914979757085, 0.020242914979757085, 0.020242914979757085, 0.020242914979757085, 0.020242914979757085, 0.016194331983805668, 0.016194331983805668, 0.016194331983805668, 0.016194331983805668, 0.016194331983805668, 0.016194331983805668, 0.016194331983805668, 0.016194331983805668, 0.016194331983805668, 0.016194331983805668, 0.020242914979757085, 0.016194331983805668, 0.020242914979757085, 0.020242914979757085, 0.016194331983805668, 0.016194331983805668, 0.016194331983805668, 0.016194331983805668, 0.016194331983805668, 0.016194331983805668, 0.016194331983805668, 0.020242914979757085, 0.020242914979757085, 0.020242914979757085, 0.020242914979757085, 0.016194331983805668, 0.016194331983805668, 0.016194331983805668, 0.016194331983805668, 0.020242914979757085, 0.024291497975708502, 0.020242914979757085, 0.020242914979757085, 0.016194331983805668, 0.012145748987854251, 0.012145748987854251, 0.012145748987854251, 0.012145748987854251, 0.016194331983805668, 0.016194331983805668, 0.016194331983805668, 0.012145748987854251, 0.012145748987854251, 0.012145748987854251, 0.012145748987854251, 0.012145748987854251, 0.024291497975708502, 0.012145748987854251, 0.012145748987854251, 0.016194331983805668, 0.145748987854251, 0.012145748987854251, 0.012145748987854251, 0.016194331983805668, 0.012145748987854251, 0.012145748987854251, 0.016194331983805668, 0.016194331983805668, 0.012145748987854251, 0.012145748987854251, 0.020242914979757085, 0.020242914979757085, 0.020242914979757085, 0.020242914979757085, 0.012145748987854251, 0.012145748987854251, 0.012145748987854251, 0.012145748987854251, 0.012145748987854251, 0.012145748987854251, 0.012145748987854251, 0.012145748987854251, 0.012145748987854251, 0.012145748987854251, 0.012145748987854251, 0.012145748987854251, 0.012145748987854251, 0.012145748987854251, 0.012145748987854251, 0.012145748987854251, 0.012145748987854251, 0.012145748987854251, 0.012145748987854251, 0.012145748987854251, 0.012145748987854251, 0.012145748987854251, 0.012145748987854251, 0.012145748987854251, 0.012145748987854251, 0.012145748987854251, 0.012145748987854251, 0.012145748987854251, 0.012145748987854251, 0.016194331983805668, 0.016194331983805668, 0.016194331983805668, 0.020242914979757085, 0.020242914979757085, 0.032388663967611336, 0.06882591093117409, 0.14979757085020243], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4367.gap.json b/pfam_gap_rates/DUF4367.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..7292bfe9cf5e08f61607d7ab9cd625dea857b54f
--- /dev/null
+++ b/pfam_gap_rates/DUF4367.gap.json
@@ -0,0 +1 @@
+{"family": "DUF4367", "n_seqs": 280, "length": 138, "gap_rates": [0.5964285714285714, 0.3464285714285714, 0.21428571428571427, 0.20357142857142857, 0.19642857142857142, 0.17857142857142858, 0.17857142857142858, 0.16428571428571428, 0.16428571428571428, 0.16071428571428573, 0.7392857142857143, 0.8785714285714286, 0.9285714285714286, 0.95, 0.9107142857142857, 0.8035714285714286, 0.7357142857142858, 0.5357142857142857, 0.5035714285714286, 0.21785714285714286, 0.2, 0.18928571428571428, 0.16785714285714284, 0.15357142857142858, 0.1357142857142857, 0.125, 0.11785714285714285, 0.10357142857142858, 0.1, 0.09642857142857143, 0.08928571428571429, 0.08214285714285714, 0.08214285714285714, 0.08928571428571429, 0.08214285714285714, 0.38571428571428573, 0.36428571428571427, 0.9, 0.13214285714285715, 0.10357142857142858, 0.08571428571428572, 0.08571428571428572, 0.07857142857142857, 0.08214285714285714, 0.07857142857142857, 0.07857142857142857, 0.09285714285714286, 0.7642857142857142, 0.55, 0.5071428571428571, 0.4035714285714286, 0.2392857142857143, 0.11785714285714285, 0.09642857142857143, 0.08214285714285714, 0.08571428571428572, 0.07857142857142857, 0.9392857142857143, 0.06428571428571428, 0.06785714285714285, 0.075, 0.06428571428571428, 0.06785714285714285, 0.07142857142857142, 0.22857142857142856, 0.18928571428571428, 0.14285714285714285, 0.12142857142857143, 0.9142857142857143, 0.9285714285714286, 0.8357142857142857, 0.07857142857142857, 0.05357142857142857, 0.025, 0.02142857142857143, 0.02142857142857143, 0.017857142857142856, 0.014285714285714285, 0.014285714285714285, 0.017857142857142856, 0.017857142857142856, 0.017857142857142856, 0.014285714285714285, 0.014285714285714285, 0.014285714285714285, 0.017857142857142856, 0.017857142857142856, 0.039285714285714285, 0.04642857142857143, 0.04642857142857143, 0.06785714285714285, 0.40714285714285714, 0.6821428571428572, 0.8035714285714286, 0.8928571428571429, 0.9142857142857143, 0.9464285714285714, 0.9035714285714286, 0.8321428571428572, 0.75, 0.6392857142857142, 0.02857142857142857, 0.02857142857142857, 0.014285714285714285, 0.010714285714285714, 0.0035714285714285713, 0.9321428571428572, 0.8857142857142857, 0.014285714285714285, 0.007142857142857143, 0.0035714285714285713, 0.0035714285714285713, 0.0035714285714285713, 0.0035714285714285713, 0.0035714285714285713, 0.0035714285714285713, 0.0035714285714285713, 0.007142857142857143, 0.9321428571428572, 0.9071428571428571, 0.010714285714285714, 0.8357142857142857, 0.95, 0.625, 0.007142857142857143, 0.007142857142857143, 0.007142857142857143, 0.007142857142857143, 0.007142857142857143, 0.007142857142857143, 0.010714285714285714, 0.010714285714285714, 0.014285714285714285, 0.017857142857142856, 0.025, 0.039285714285714285, 0.075, 0.16428571428571428], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4386.gap.json b/pfam_gap_rates/DUF4386.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..aabec7c8fdd66b87bf7f02f178d2af634ea6ccce
--- /dev/null
+++ b/pfam_gap_rates/DUF4386.gap.json
@@ -0,0 +1 @@
+{"family": "DUF4386", "n_seqs": 252, "length": 236, "gap_rates": [0.4642857142857143, 0.27380952380952384, 0.1865079365079365, 0.1746031746031746, 0.15079365079365079, 0.14682539682539683, 0.14285714285714285, 0.12698412698412698, 0.11507936507936507, 0.1111111111111111, 0.11507936507936507, 0.13095238095238096, 0.12698412698412698, 0.11904761904761904, 0.11904761904761904, 0.14285714285714285, 0.29365079365079366, 0.15873015873015872, 0.17063492063492064, 0.15079365079365079, 0.13095238095238096, 0.12301587301587301, 0.11507936507936507, 0.1111111111111111, 0.8412698412698413, 0.8690476190476191, 0.8571428571428571, 0.8373015873015873, 0.24603174603174602, 0.376984126984127, 0.3531746031746032, 0.34523809523809523, 0.12698412698412698, 0.11507936507936507, 0.12301587301587301, 0.10317460317460317, 0.0992063492063492, 0.09523809523809523, 0.09523809523809523, 0.09523809523809523, 0.09523809523809523, 0.0992063492063492, 0.09126984126984126, 0.14285714285714285, 0.0992063492063492, 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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4430.gap.json b/pfam_gap_rates/DUF4430.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..2d1d74a9cc43d8f436f1e23c7e2d99e5c87689d7
--- /dev/null
+++ b/pfam_gap_rates/DUF4430.gap.json
@@ -0,0 +1 @@
+{"family": "DUF4430", "n_seqs": 614, "length": 88, "gap_rates": [0.5732899022801303, 0.3957654723127036, 0.31596091205211724, 0.2719869706840391, 0.247557003257329, 0.2263843648208469, 0.2003257328990228, 0.18078175895765472, 0.1775244299674267, 0.1742671009771987, 0.1970684039087948, 0.18403908794788273, 0.1775244299674267, 0.16449511400651465, 0.1465798045602606, 0.13517915309446255, 0.12866449511400652, 0.11889250814332247, 0.11889250814332247, 0.20684039087947884, 0.20846905537459284, 0.25732899022801303, 0.255700325732899, 0.3469055374592834, 0.3729641693811075, 0.503257328990228, 0.762214983713355, 0.9283387622149837, 0.9071661237785016, 0.6807817589576547, 0.4788273615635179, 0.35993485342019543, 0.06677524429967427, 0.06026058631921824, 0.06188925081433225, 0.05863192182410423, 0.05537459283387622, 0.04560260586319218, 0.03908794788273615, 0.029315960912052116, 0.9039087947882736, 0.9315960912052117, 0.9462540716612378, 0.9332247557003257, 0.9267100977198697, 0.5325732899022801, 0.2296416938110749, 0.20195439739413681, 0.04560260586319218, 0.016286644951140065, 0.014657980456026058, 0.016286644951140065, 0.008143322475570033, 0.9136807817589576, 0.0, 0.0016286644951140066, 0.0, 0.0016286644951140066, 0.0, 0.0, 0.9478827361563518, 0.003257328990228013, 0.003257328990228013, 0.003257328990228013, 0.003257328990228013, 0.003257328990228013, 0.004885993485342019, 0.003257328990228013, 0.006514657980456026, 0.003257328990228013, 0.004885993485342019, 0.009771986970684038, 0.011400651465798045, 0.011400651465798045, 0.011400651465798045, 0.011400651465798045, 0.014657980456026058, 0.014657980456026058, 0.014657980456026058, 0.017915309446254073, 0.019543973941368076, 0.021172638436482084, 0.024429967426710098, 0.030944625407166124, 0.03745928338762215, 0.06677524429967427, 0.21172638436482086, 0.8224755700325733], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF448.gap.json b/pfam_gap_rates/DUF448.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..7d785d3efa5e4fa8da239974da6dd5e35ec0b3e0
--- /dev/null
+++ b/pfam_gap_rates/DUF448.gap.json
@@ -0,0 +1 @@
+{"family": "DUF448", "n_seqs": 1087, "length": 82, "gap_rates": [0.07175712971481141, 0.06347746090156393, 0.06347746090156393, 0.04875804967801288, 0.04783808647654094, 0.045998160073597055, 0.045998160073597055, 0.04415823367065318, 0.03311867525298988, 0.03311867525298988, 0.03219871205151794, 0.03219871205151794, 0.03219871205151794, 0.029438822447102116, 0.02391904323827047, 0.02207911683532659, 0.020239190432382703, 0.020239190432382703, 0.019319227230910764, 0.020239190432382703, 0.017479300827966882, 0.028518859245630176, 0.011959521619135235, 0.8794848206071757, 0.9346826126954921, 0.9484820607175714, 0.9190432382704692, 0.1140754369825207, 0.010119595216191352, 0.006439742410303588, 0.005519779208831647, 0.0036798528058877645, 0.004599816007359705, 0.06439742410303588, 0.012879484820607176, 0.00919963201471941, 0.0671573137074517, 0.062557497700092, 0.0009199632014719411, 0.0009199632014719411, 0.0009199632014719411, 0.0009199632014719411, 0.0018399264029438822, 0.0027598896044158236, 0.0027598896044158236, 0.0027598896044158236, 0.028518859245630176, 0.020239190432382703, 0.005519779208831647, 0.004599816007359705, 0.0036798528058877645, 0.004599816007359705, 0.004599816007359705, 0.007359705611775529, 0.010119595216191352, 0.012879484820607176, 0.011959521619135235, 0.014719411223551058, 0.03863845446182153, 0.025758969641214352, 0.02391904323827047, 0.028518859245630176, 0.03219871205151794, 0.03403863845446182, 0.03403863845446182, 0.03771849126034959, 0.9411223551057958, 0.05243790248390064, 0.07083716651333946, 0.09383624655013799, 0.11131554737810488, 0.8298068077276909, 0.8003679852805887, 0.1453541858325667, 0.17571297148114076, 0.19871205151793928, 0.21987120515179392, 0.23827046918123276, 0.26034958601655933, 0.28058877644894203, 0.48666053357865685, 0.906163753449862], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4588.gap.json b/pfam_gap_rates/DUF4588.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..966b4549b2232e9bb045dac0bfc4769e0e1fd010
--- /dev/null
+++ b/pfam_gap_rates/DUF4588.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4728.gap.json b/pfam_gap_rates/DUF4728.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ba15ee3b651b7067debd96c98697b143048abc12
--- /dev/null
+++ b/pfam_gap_rates/DUF4728.gap.json
@@ -0,0 +1 @@
+{"family": "DUF4728", "n_seqs": 106, "length": 95, "gap_rates": [0.8962264150943396, 0.7452830188679245, 0.5566037735849056, 0.4056603773584906, 0.8018867924528302, 0.22641509433962265, 0.16981132075471697, 0.07547169811320754, 0.07547169811320754, 0.05660377358490566, 0.03773584905660377, 0.018867924528301886, 0.018867924528301886, 0.018867924528301886, 0.018867924528301886, 0.018867924528301886, 0.009433962264150943, 0.009433962264150943, 0.009433962264150943, 0.009433962264150943, 0.009433962264150943, 0.009433962264150943, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.19811320754716982, 0.07547169811320754, 0.018867924528301886, 0.1509433962264151, 0.14150943396226415, 0.03773584905660377, 0.10377358490566038, 0.04716981132075472, 0.018867924528301886, 0.02830188679245283, 0.018867924528301886, 0.07547169811320754, 0.04716981132075472, 0.1320754716981132, 0.0660377358490566, 0.05660377358490566, 0.05660377358490566, 0.03773584905660377, 0.02830188679245283, 0.018867924528301886, 0.1792452830188679, 0.07547169811320754, 0.02830188679245283, 0.03773584905660377, 0.9433962264150944, 0.018867924528301886, 0.018867924528301886, 0.02830188679245283, 0.018867924528301886, 0.04716981132075472, 0.12264150943396226, 0.9433962264150944, 0.1792452830188679, 0.08490566037735849, 0.08490566037735849, 0.02830188679245283, 0.02830188679245283, 0.8773584905660378, 0.018867924528301886, 0.018867924528301886, 0.018867924528301886, 0.018867924528301886, 0.018867924528301886, 0.02830188679245283, 0.02830188679245283, 0.04716981132075472, 0.04716981132075472, 0.04716981132075472, 0.04716981132075472, 0.04716981132075472, 0.04716981132075472, 0.04716981132075472, 0.05660377358490566, 0.07547169811320754, 0.12264150943396226, 0.18867924528301888, 0.2830188679245283, 0.6792452830188679], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4780.gap.json b/pfam_gap_rates/DUF4780.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..daafeda4cc0726b211e27a36783fb3326b995830
--- /dev/null
+++ b/pfam_gap_rates/DUF4780.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF480.gap.json b/pfam_gap_rates/DUF480.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..3b79ee21dee052b2f7a5b85517488331b2610bf1
--- /dev/null
+++ b/pfam_gap_rates/DUF480.gap.json
@@ -0,0 +1 @@
+{"family": "DUF480", "n_seqs": 188, "length": 157, "gap_rates": [0.11170212765957446, 0.047872340425531915, 0.026595744680851064, 0.02127659574468085, 0.02127659574468085, 0.02127659574468085, 0.02127659574468085, 0.02127659574468085, 0.010638297872340425, 0.010638297872340425, 0.010638297872340425, 0.010638297872340425, 0.010638297872340425, 0.010638297872340425, 0.010638297872340425, 0.010638297872340425, 0.010638297872340425, 0.010638297872340425, 0.010638297872340425, 0.010638297872340425, 0.010638297872340425, 0.010638297872340425, 0.010638297872340425, 0.010638297872340425, 0.010638297872340425, 0.010638297872340425, 0.010638297872340425, 0.010638297872340425, 0.015957446808510637, 0.015957446808510637, 0.015957446808510637, 0.015957446808510637, 0.010638297872340425, 0.010638297872340425, 0.010638297872340425, 0.010638297872340425, 0.010638297872340425, 0.010638297872340425, 0.010638297872340425, 0.010638297872340425, 0.010638297872340425, 0.010638297872340425, 0.010638297872340425, 0.010638297872340425, 0.010638297872340425, 0.010638297872340425, 0.010638297872340425, 0.010638297872340425, 0.010638297872340425, 0.010638297872340425, 0.010638297872340425, 0.010638297872340425, 0.010638297872340425, 0.010638297872340425, 0.010638297872340425, 0.005319148936170213, 0.005319148936170213, 0.005319148936170213, 0.005319148936170213, 0.005319148936170213, 0.005319148936170213, 0.005319148936170213, 0.005319148936170213, 0.005319148936170213, 0.005319148936170213, 0.005319148936170213, 0.005319148936170213, 0.5319148936170213, 0.42021276595744683, 0.005319148936170213, 0.005319148936170213, 0.005319148936170213, 0.005319148936170213, 0.010638297872340425, 0.010638297872340425, 0.010638297872340425, 0.010638297872340425, 0.010638297872340425, 0.010638297872340425, 0.010638297872340425, 0.010638297872340425, 0.010638297872340425, 0.010638297872340425, 0.010638297872340425, 0.7074468085106383, 0.7074468085106383, 0.7074468085106383, 0.7074468085106383, 0.010638297872340425, 0.010638297872340425, 0.010638297872340425, 0.010638297872340425, 0.010638297872340425, 0.010638297872340425, 0.010638297872340425, 0.010638297872340425, 0.010638297872340425, 0.010638297872340425, 0.010638297872340425, 0.010638297872340425, 0.010638297872340425, 0.010638297872340425, 0.010638297872340425, 0.010638297872340425, 0.010638297872340425, 0.010638297872340425, 0.010638297872340425, 0.010638297872340425, 0.010638297872340425, 0.010638297872340425, 0.010638297872340425, 0.010638297872340425, 0.010638297872340425, 0.010638297872340425, 0.010638297872340425, 0.010638297872340425, 0.010638297872340425, 0.010638297872340425, 0.010638297872340425, 0.010638297872340425, 0.010638297872340425, 0.010638297872340425, 0.010638297872340425, 0.010638297872340425, 0.010638297872340425, 0.010638297872340425, 0.010638297872340425, 0.010638297872340425, 0.010638297872340425, 0.010638297872340425, 0.010638297872340425, 0.010638297872340425, 0.010638297872340425, 0.010638297872340425, 0.010638297872340425, 0.010638297872340425, 0.010638297872340425, 0.010638297872340425, 0.010638297872340425, 0.22340425531914893, 0.23404255319148937, 0.9148936170212766, 0.9202127659574468, 0.9202127659574468, 0.6329787234042553, 0.0425531914893617, 0.0425531914893617, 0.0425531914893617, 0.0425531914893617, 0.0425531914893617, 0.0425531914893617, 0.05851063829787234, 0.06382978723404255, 0.06914893617021277, 0.06914893617021277, 0.07446808510638298, 0.4148936170212766], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4845.gap.json b/pfam_gap_rates/DUF4845.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..125f2989b4f207d35e3f4416a711ba1e22e09924
--- /dev/null
+++ b/pfam_gap_rates/DUF4845.gap.json
@@ -0,0 +1 @@
+{"family": "DUF4845", "n_seqs": 171, "length": 89, "gap_rates": [0.1871345029239766, 0.04093567251461988, 0.029239766081871343, 0.029239766081871343, 0.023391812865497075, 0.011695906432748537, 0.011695906432748537, 0.011695906432748537, 0.011695906432748537, 0.011695906432748537, 0.011695906432748537, 0.011695906432748537, 0.011695906432748537, 0.011695906432748537, 0.011695906432748537, 0.011695906432748537, 0.029239766081871343, 0.04678362573099415, 0.05263157894736842, 0.9298245614035088, 0.391812865497076, 0.2982456140350877, 0.2573099415204678, 0.15204678362573099, 0.04093567251461988, 0.011695906432748537, 0.011695906432748537, 0.017543859649122806, 0.017543859649122806, 0.011695906432748537, 0.011695906432748537, 0.011695906432748537, 0.011695906432748537, 0.011695906432748537, 0.011695906432748537, 0.011695906432748537, 0.011695906432748537, 0.011695906432748537, 0.005847953216374269, 0.005847953216374269, 0.005847953216374269, 0.005847953216374269, 0.005847953216374269, 0.005847953216374269, 0.005847953216374269, 0.9298245614035088, 0.005847953216374269, 0.005847953216374269, 0.9415204678362573, 0.06432748538011696, 0.005847953216374269, 0.011695906432748537, 0.005847953216374269, 0.005847953216374269, 0.005847953216374269, 0.005847953216374269, 0.005847953216374269, 0.005847953216374269, 0.005847953216374269, 0.005847953216374269, 0.005847953216374269, 0.011695906432748537, 0.847953216374269, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.011695906432748537, 0.011695906432748537, 0.017543859649122806, 0.017543859649122806, 0.017543859649122806, 0.023391812865497075, 0.023391812865497075, 0.023391812865497075, 0.029239766081871343, 0.04093567251461988], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF485.gap.json b/pfam_gap_rates/DUF485.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a627090b3c242c7d02ce44f2ead81cbb70ce0162
--- /dev/null
+++ b/pfam_gap_rates/DUF485.gap.json
@@ -0,0 +1 @@
+{"family": "DUF485", "n_seqs": 474, "length": 90, "gap_rates": [0.7468354430379747, 0.23417721518987342, 0.12025316455696203, 0.09282700421940929, 0.07805907172995781, 0.07172995780590717, 0.05485232067510549, 0.05063291139240506, 0.04852320675105485, 0.04430379746835443, 0.04219409282700422, 0.035864978902953586, 0.023206751054852322, 0.0189873417721519, 0.0189873417721519, 0.016877637130801686, 0.014767932489451477, 0.010548523206751054, 0.010548523206751054, 0.006329113924050633, 0.006329113924050633, 0.006329113924050633, 0.006329113924050633, 0.004219409282700422, 0.004219409282700422, 0.004219409282700422, 0.004219409282700422, 0.004219409282700422, 0.004219409282700422, 0.004219409282700422, 0.004219409282700422, 0.004219409282700422, 0.004219409282700422, 0.004219409282700422, 0.010548523206751054, 0.006329113924050633, 0.004219409282700422, 0.004219409282700422, 0.1518987341772152, 0.004219409282700422, 0.004219409282700422, 0.002109704641350211, 0.002109704641350211, 0.002109704641350211, 0.002109704641350211, 0.002109704641350211, 0.002109704641350211, 0.6265822784810127, 0.004219409282700422, 0.7974683544303798, 0.052742616033755275, 0.002109704641350211, 0.002109704641350211, 0.0, 0.010548523206751054, 0.004219409282700422, 0.002109704641350211, 0.002109704641350211, 0.002109704641350211, 0.002109704641350211, 0.002109704641350211, 0.002109704641350211, 0.002109704641350211, 0.004219409282700422, 0.004219409282700422, 0.002109704641350211, 0.002109704641350211, 0.002109704641350211, 0.002109704641350211, 0.002109704641350211, 0.002109704641350211, 0.002109704641350211, 0.002109704641350211, 0.002109704641350211, 0.004219409282700422, 0.008438818565400843, 0.010548523206751054, 0.016877637130801686, 0.023206751054852322, 0.20042194092827004, 0.0379746835443038, 0.0379746835443038, 0.04430379746835443, 0.04852320675105485, 0.05063291139240506, 0.052742616033755275, 0.06118143459915612, 0.07383966244725738, 0.13924050632911392, 0.8333333333333334], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4870.gap.json b/pfam_gap_rates/DUF4870.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..53e6d6923fc13c33b00c015055dab7ad91caabc6
--- /dev/null
+++ b/pfam_gap_rates/DUF4870.gap.json
@@ -0,0 +1 @@
+{"family": "DUF4870", "n_seqs": 504, "length": 143, "gap_rates": [0.625, 0.34325396825396826, 0.2916666666666667, 0.251984126984127, 0.22817460317460317, 0.1984126984126984, 0.1884920634920635, 0.18055555555555555, 0.18055555555555555, 0.15674603174603174, 0.1488095238095238, 0.14484126984126985, 0.12896825396825398, 0.9126984126984127, 0.8829365079365079, 0.5515873015873016, 0.5416666666666666, 0.4305555555555556, 0.3869047619047619, 0.3392857142857143, 0.3353174603174603, 0.0873015873015873, 0.07738095238095238, 0.03571428571428571, 0.01984126984126984, 0.00992063492063492, 0.007936507936507936, 0.007936507936507936, 0.005952380952380952, 0.007936507936507936, 0.005952380952380952, 0.003968253968253968, 0.003968253968253968, 0.003968253968253968, 0.003968253968253968, 0.003968253968253968, 0.005952380952380952, 0.005952380952380952, 0.35912698412698413, 0.22817460317460317, 0.023809523809523808, 0.005952380952380952, 0.001984126984126984, 0.001984126984126984, 0.001984126984126984, 0.0, 0.0, 0.0, 0.0, 0.001984126984126984, 0.013888888888888888, 0.013888888888888888, 0.011904761904761904, 0.001984126984126984, 0.003968253968253968, 0.005952380952380952, 0.003968253968253968, 0.001984126984126984, 0.001984126984126984, 0.007936507936507936, 0.015873015873015872, 0.013888888888888888, 0.011904761904761904, 0.00992063492063492, 0.007936507936507936, 0.00992063492063492, 0.5575396825396826, 0.06746031746031746, 0.05555555555555555, 0.027777777777777776, 0.013888888888888888, 0.00992063492063492, 0.746031746031746, 0.7619047619047619, 0.7817460317460317, 0.8095238095238095, 0.8432539682539683, 0.873015873015873, 0.8908730158730159, 0.9087301587301587, 0.9186507936507936, 0.9265873015873016, 0.9325396825396826, 0.9484126984126984, 0.9424603174603174, 0.9285714285714286, 0.9226190476190477, 0.9126984126984127, 0.9027777777777778, 0.8809523809523809, 0.8551587301587301, 0.8333333333333334, 0.7956349206349206, 0.7678571428571429, 0.746031746031746, 0.7361111111111112, 0.011904761904761904, 0.08531746031746032, 0.9166666666666666, 0.7599206349206349, 0.6011904761904762, 0.5198412698412699, 0.8670634920634921, 0.9067460317460317, 0.8115079365079365, 0.01984126984126984, 0.011904761904761904, 0.00992063492063492, 0.005952380952380952, 0.003968253968253968, 0.003968253968253968, 0.003968253968253968, 0.003968253968253968, 0.003968253968253968, 0.005952380952380952, 0.005952380952380952, 0.007936507936507936, 0.005952380952380952, 0.007936507936507936, 0.007936507936507936, 0.00992063492063492, 0.011904761904761904, 0.015873015873015872, 0.017857142857142856, 0.023809523809523808, 0.06746031746031746, 0.9226190476190477, 0.9186507936507936, 0.08134920634920635, 0.0873015873015873, 0.09325396825396826, 0.09523809523809523, 0.10119047619047619, 0.10119047619047619, 0.10714285714285714, 0.11507936507936507, 0.11904761904761904, 0.13095238095238096, 0.18253968253968253, 0.251984126984127, 0.26587301587301587, 0.2916666666666667, 0.3492063492063492], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF494.gap.json b/pfam_gap_rates/DUF494.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..8a20ee583afab8a2e358271ca21dd5c919d8cd3c
--- /dev/null
+++ b/pfam_gap_rates/DUF494.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF4982.gap.json b/pfam_gap_rates/DUF4982.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..1b9797b321dd05eebbfaceabeee3dcc976f12b08
--- /dev/null
+++ b/pfam_gap_rates/DUF4982.gap.json
@@ -0,0 +1 @@
+{"family": "DUF4982", "n_seqs": 619, "length": 86, "gap_rates": [0.32794830371567046, 0.2956381260096931, 0.1987075928917609, 0.10662358642972536, 0.027463651050080775, 0.014539579967689823, 0.008077544426494346, 0.006462035541195477, 0.004846526655896607, 0.004846526655896607, 0.004846526655896607, 0.9499192245557351, 0.004846526655896607, 0.004846526655896607, 0.004846526655896607, 0.004846526655896607, 0.004846526655896607, 0.004846526655896607, 0.004846526655896607, 0.0032310177705977385, 0.0032310177705977385, 0.0032310177705977385, 0.0032310177705977385, 0.0032310177705977385, 0.0032310177705977385, 0.0032310177705977385, 0.0032310177705977385, 0.0032310177705977385, 0.004846526655896607, 0.004846526655896607, 0.654281098546042, 0.7689822294022617, 0.827140549273021, 0.851373182552504, 0.8562197092084006, 0.8578352180936996, 0.8626817447495961, 0.8885298869143781, 0.8966074313408724, 0.9483037156704361, 0.9127625201938611, 0.8966074313408724, 0.877221324717286, 0.8610662358642972, 0.8562197092084006, 0.8529886914378029, 0.8319870759289176, 0.815831987075929, 0.6736672051696284, 0.46526655896607433, 0.27140549273021003, 0.09208400646203554, 0.030694668820678513, 0.011308562197092083, 0.009693053311793215, 0.008077544426494346, 0.011308562197092083, 0.011308562197092083, 0.009693053311793215, 0.008077544426494346, 0.6445880452342488, 0.008077544426494346, 0.008077544426494346, 0.008077544426494346, 0.014539579967689823, 0.0210016155088853, 0.0210016155088853, 0.022617124394184167, 0.9224555735056543, 0.9176090468497576, 0.022617124394184167, 0.022617124394184167, 0.024232633279483037, 0.025848142164781908, 0.030694668820678513, 0.06623586429725363, 0.6526655896607432, 0.07754442649434572, 0.08723747980613894, 0.09531502423263329, 0.1050080775444265, 0.1260096930533118, 0.16155088852988692, 0.210016155088853, 0.3780290791599354, 0.7415185783521809], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF5107.gap.json b/pfam_gap_rates/DUF5107.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..100728de557217222ab29c8cdcf42570e06e66dc
--- /dev/null
+++ b/pfam_gap_rates/DUF5107.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF5127.gap.json b/pfam_gap_rates/DUF5127.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c3908b9bc072c7d6fe0950669af80bd7ed9c5c8b
--- /dev/null
+++ b/pfam_gap_rates/DUF5127.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF554.gap.json b/pfam_gap_rates/DUF554.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..1255ab58845ed9cb84ae62774c5b00130722f896
--- /dev/null
+++ b/pfam_gap_rates/DUF554.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF559.gap.json b/pfam_gap_rates/DUF559.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..2cd0ccf17ecafb6c5d19331efb3216830f14aedf
--- /dev/null
+++ b/pfam_gap_rates/DUF559.gap.json
@@ -0,0 +1 @@
+{"family": "DUF559", "n_seqs": 1028, "length": 111, "gap_rates": [0.9173151750972762, 0.7782101167315175, 0.6575875486381323, 0.5710116731517509, 0.5379377431906615, 0.5272373540856031, 0.5233463035019456, 0.519455252918288, 0.5077821011673151, 0.5038910505836576, 0.5009727626459144, 0.49513618677042803, 0.48151750972762647, 0.4678988326848249, 0.46206225680933855, 0.4474708171206226, 0.438715953307393, 0.43093385214007784, 0.42412451361867703, 0.4173151750972763, 0.41342412451361865, 0.4153696498054475, 0.41245136186770426, 0.4075875486381323, 0.4075875486381323, 0.4075875486381323, 0.41147859922178986, 0.42315175097276264, 0.428988326848249, 0.3968871595330739, 0.45622568093385213, 0.3404669260700389, 0.33073929961089493, 0.3219844357976654, 0.3132295719844358, 0.3103112840466926, 0.3044747081712062, 0.29961089494163423, 0.2898832684824903, 0.2821011673151751, 0.26459143968871596, 0.25, 0.24027237354085604, 0.2169260700389105, 0.17217898832684825, 0.13618677042801555, 0.13521400778210116, 0.13132295719844359, 0.14396887159533073, 0.13521400778210116, 0.10797665369649806, 0.09241245136186771, 0.08560311284046693, 0.07879377431906615, 0.07295719844357977, 0.06809338521400778, 0.06809338521400778, 0.06712062256809338, 0.06809338521400778, 0.06614785992217899, 0.06614785992217899, 0.06809338521400778, 0.8998054474708171, 0.06809338521400778, 0.05642023346303502, 0.10311284046692606, 0.05058365758754864, 0.42217898832684825, 0.8346303501945526, 0.37937743190661477, 0.019455252918287938, 0.01264591439688716, 0.010700389105058366, 0.010700389105058366, 0.01264591439688716, 0.013618677042801557, 0.014591439688715954, 0.014591439688715954, 0.013618677042801557, 0.013618677042801557, 0.014591439688715954, 0.01556420233463035, 0.01848249027237354, 0.019455252918287938, 0.019455252918287938, 0.017509727626459144, 0.017509727626459144, 0.01848249027237354, 0.019455252918287938, 0.019455252918287938, 0.02237354085603113, 0.029182879377431907, 0.03696498054474708, 0.04474708171206226, 0.057392996108949414, 0.061284046692607, 0.08949416342412451, 0.07976653696498054, 0.0943579766536965, 0.09727626459143969, 0.10214007782101167, 0.10603112840466926, 0.10992217898832685, 0.11186770428015565, 0.12062256809338522, 0.13132295719844359, 0.14785992217898833, 0.18968871595330739, 0.25583657587548636, 0.38035019455252916, 0.5535019455252919], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF594.gap.json b/pfam_gap_rates/DUF594.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..58d49dbddeacc6c306658bfdb1321e08e3d89b17
--- /dev/null
+++ b/pfam_gap_rates/DUF594.gap.json
@@ -0,0 +1 @@
+{"family": "DUF594", "n_seqs": 719, "length": 55, "gap_rates": [0.894297635605007, 0.655076495132128, 0.4200278164116829, 0.26842837273991654, 0.17246175243393602, 0.11126564673157163, 0.06397774687065369, 0.05006954102920723, 0.02364394993045897, 0.02086230876216968, 0.019471488178025034, 0.019471488178025034, 0.016689847009735744, 0.015299026425591099, 0.015299026425591099, 0.015299026425591099, 0.015299026425591099, 0.009735744089012517, 0.009735744089012517, 0.011126564673157162, 0.008344923504867872, 0.006954102920723227, 0.006954102920723227, 0.9499304589707928, 0.005563282336578581, 0.0027816411682892906, 0.004172461752433936, 0.005563282336578581, 0.006954102920723227, 0.004172461752433936, 0.004172461752433936, 0.004172461752433936, 0.004172461752433936, 0.005563282336578581, 0.009735744089012517, 0.012517385257301807, 0.013908205841446454, 0.019471488178025034, 0.02086230876216968, 0.043115438108484005, 0.05006954102920723, 0.05006954102920723, 0.05146036161335188, 0.05285118219749652, 0.055632823365785816, 0.06397774687065369, 0.06675938803894298, 0.06815020862308763, 0.06815020862308763, 0.07510431154381085, 0.08762169680111266, 0.12378303198887343, 0.18915159944367177, 0.2573018080667594, 0.3463143254520167], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF667.gap.json b/pfam_gap_rates/DUF667.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c84c8ab241121846b2745019f5d579d6b0bf4a21
--- /dev/null
+++ b/pfam_gap_rates/DUF667.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF674.gap.json b/pfam_gap_rates/DUF674.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..eacec386c901e682a8767c0bbd18b42f2fddfbc6
--- /dev/null
+++ b/pfam_gap_rates/DUF674.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF676.gap.json b/pfam_gap_rates/DUF676.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..979a3d27b519e2002d7d8010cb3c2e2a7646fadb
--- /dev/null
+++ b/pfam_gap_rates/DUF676.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF808.gap.json b/pfam_gap_rates/DUF808.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b6eb6194d60757d44499c81a8a31b413ac8ed8cb
--- /dev/null
+++ b/pfam_gap_rates/DUF808.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF812.gap.json b/pfam_gap_rates/DUF812.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..1bbaadd87b816da12bdfded1a581d9f964880af4
--- /dev/null
+++ b/pfam_gap_rates/DUF812.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF825.gap.json b/pfam_gap_rates/DUF825.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..797630ca4585e4b4173a4b2b6a8c0e86f49734e4
--- /dev/null
+++ b/pfam_gap_rates/DUF825.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF842.gap.json b/pfam_gap_rates/DUF842.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..6bf0b78c25c9314d3c83ab65e1a345c75b1cf456
--- /dev/null
+++ b/pfam_gap_rates/DUF842.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF892.gap.json b/pfam_gap_rates/DUF892.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..4e3df76b8ff70a2196f46547a65c9f014a225f4a
--- /dev/null
+++ b/pfam_gap_rates/DUF892.gap.json
@@ -0,0 +1 @@
+{"family": "DUF892", "n_seqs": 379, "length": 161, "gap_rates": [0.6464379947229552, 0.1820580474934037, 0.10290237467018469, 0.06860158311345646, 0.05013192612137203, 0.047493403693931395, 0.047493403693931395, 0.044854881266490766, 0.044854881266490766, 0.044854881266490766, 0.044854881266490766, 0.044854881266490766, 0.044854881266490766, 0.044854881266490766, 0.044854881266490766, 0.044854881266490766, 0.044854881266490766, 0.044854881266490766, 0.044854881266490766, 0.044854881266490766, 0.04221635883905013, 0.0395778364116095, 0.036939313984168866, 0.036939313984168866, 0.036939313984168866, 0.036939313984168866, 0.0316622691292876, 0.0316622691292876, 0.0316622691292876, 0.0316622691292876, 0.03430079155672823, 0.0316622691292876, 0.0316622691292876, 0.8311345646437994, 0.0316622691292876, 0.0316622691292876, 0.0316622691292876, 0.0316622691292876, 0.029023746701846966, 0.029023746701846966, 0.029023746701846966, 0.029023746701846966, 0.029023746701846966, 0.029023746701846966, 0.029023746701846966, 0.029023746701846966, 0.029023746701846966, 0.029023746701846966, 0.029023746701846966, 0.029023746701846966, 0.029023746701846966, 0.029023746701846966, 0.029023746701846966, 0.029023746701846966, 0.029023746701846966, 0.029023746701846966, 0.0316622691292876, 0.0316622691292876, 0.03430079155672823, 0.0316622691292876, 0.026385224274406333, 0.026385224274406333, 0.029023746701846966, 0.029023746701846966, 0.0316622691292876, 0.0316622691292876, 0.0316622691292876, 0.0316622691292876, 0.0316622691292876, 0.0316622691292876, 0.21635883905013192, 0.036939313984168866, 0.03430079155672823, 0.029023746701846966, 0.026385224274406333, 0.023746701846965697, 0.023746701846965697, 0.023746701846965697, 0.023746701846965697, 0.023746701846965697, 0.021108179419525065, 0.018469656992084433, 0.018469656992084433, 0.9445910290237467, 0.018469656992084433, 0.018469656992084433, 0.021108179419525065, 0.021108179419525065, 0.5883905013192612, 0.047493403693931395, 0.023746701846965697, 0.018469656992084433, 0.021108179419525065, 0.047493403693931395, 0.0158311345646438, 0.0158311345646438, 0.018469656992084433, 0.018469656992084433, 0.018469656992084433, 0.20316622691292877, 0.20580474934036938, 0.19788918205804748, 0.018469656992084433, 0.018469656992084433, 0.0158311345646438, 0.0158311345646438, 0.0158311345646438, 0.0158311345646438, 0.0158311345646438, 0.0158311345646438, 0.0158311345646438, 0.018469656992084433, 0.0158311345646438, 0.0158311345646438, 0.0158311345646438, 0.0158311345646438, 0.0158311345646438, 0.0158311345646438, 0.0158311345646438, 0.018469656992084433, 0.018469656992084433, 0.018469656992084433, 0.018469656992084433, 0.018469656992084433, 0.018469656992084433, 0.0158311345646438, 0.0158311345646438, 0.018469656992084433, 0.018469656992084433, 0.023746701846965697, 0.018469656992084433, 0.018469656992084433, 0.018469656992084433, 0.018469656992084433, 0.018469656992084433, 0.018469656992084433, 0.018469656992084433, 0.021108179419525065, 0.026385224274406333, 0.023746701846965697, 0.023746701846965697, 0.023746701846965697, 0.026385224274406333, 0.026385224274406333, 0.03430079155672823, 0.036939313984168866, 0.036939313984168866, 0.036939313984168866, 0.036939313984168866, 0.036939313984168866, 0.036939313984168866, 0.0395778364116095, 0.047493403693931395, 0.07651715039577836, 0.079155672823219, 0.11873350923482849, 0.1345646437994723, 0.17678100263852242, 0.23482849604221637, 0.30606860158311344, 0.8126649076517151], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF900.gap.json b/pfam_gap_rates/DUF900.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..34a7367f33835a49ac858c3ece382f6ac2ec23c1
--- /dev/null
+++ b/pfam_gap_rates/DUF900.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF910.gap.json b/pfam_gap_rates/DUF910.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e22ce04aef2598eafbe321fcf95972092d811f20
--- /dev/null
+++ b/pfam_gap_rates/DUF910.gap.json
@@ -0,0 +1 @@
+{"family": "DUF910", "n_seqs": 156, "length": 61, "gap_rates": [0.1794871794871795, 0.07051282051282051, 0.04487179487179487, 0.038461538461538464, 0.03205128205128205, 0.02564102564102564, 0.019230769230769232, 0.019230769230769232, 0.019230769230769232, 0.019230769230769232, 0.019230769230769232, 0.019230769230769232, 0.019230769230769232, 0.019230769230769232, 0.019230769230769232, 0.019230769230769232, 0.019230769230769232, 0.019230769230769232, 0.019230769230769232, 0.019230769230769232, 0.019230769230769232, 0.019230769230769232, 0.019230769230769232, 0.019230769230769232, 0.019230769230769232, 0.019230769230769232, 0.019230769230769232, 0.019230769230769232, 0.01282051282051282, 0.0, 0.00641025641025641, 0.00641025641025641, 0.00641025641025641, 0.00641025641025641, 0.00641025641025641, 0.00641025641025641, 0.00641025641025641, 0.00641025641025641, 0.00641025641025641, 0.00641025641025641, 0.00641025641025641, 0.00641025641025641, 0.00641025641025641, 0.00641025641025641, 0.00641025641025641, 0.00641025641025641, 0.00641025641025641, 0.00641025641025641, 0.00641025641025641, 0.00641025641025641, 0.00641025641025641, 0.00641025641025641, 0.00641025641025641, 0.00641025641025641, 0.00641025641025641, 0.01282051282051282, 0.01282051282051282, 0.019230769230769232, 0.05128205128205128, 0.23076923076923078, 0.8012820512820513], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF917.gap.json b/pfam_gap_rates/DUF917.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..431ff95b0a32a4353a6367511be1b7c8821b3300
--- /dev/null
+++ b/pfam_gap_rates/DUF917.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF92.gap.json b/pfam_gap_rates/DUF92.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ac4d8338e65d876cde816a77e0f018feed012f8a
--- /dev/null
+++ b/pfam_gap_rates/DUF92.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF955.gap.json b/pfam_gap_rates/DUF955.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f05b90c99bebd2a0279d920adcf11a54686690fb
--- /dev/null
+++ b/pfam_gap_rates/DUF955.gap.json
@@ -0,0 +1 @@
+{"family": "DUF955", "n_seqs": 2063, "length": 159, "gap_rates": [0.924866698982065, 0.7857489093553078, 0.6994667959282598, 0.6543868153174988, 0.6194861851672322, 0.6015511391177897, 0.5894328647600582, 0.5753756665050896, 0.56858943286476, 0.5879786718371304, 0.5608337372758119, 0.5438681531749879, 0.5244789142026175, 0.5079980610761028, 0.49878817256422686, 0.48230731943771205, 0.4595249636451769, 0.4667959282598158, 0.4323800290838585, 0.407174018419777, 0.3882695104217159, 0.36694134755210855, 0.3654871546291808, 0.3727581192438197, 0.36015511391177896, 0.3737275811924382, 0.8734852157052836, 0.9171110033931168, 0.9471643238002908, 0.9345613184682501, 0.8943286476005817, 0.8182258846340281, 0.4037809015996122, 0.15656810470189045, 0.14299563742123123, 0.13136209403780902, 0.12166747455162386, 0.11730489578284052, 0.11439650993698497, 0.11100339311682017, 0.10518662142510907, 0.09694619486185167, 0.8017450315075133, 0.0896752302472128, 0.07367910809500727, 0.0605913717886573, 0.05138148327678139, 0.04701890450799806, 0.04168686379059622, 0.031022782355792537, 0.02617547261269995, 0.02666020358700921, 0.0232670867668444, 0.021328162869607366, 0.021328162869607366, 0.02084343189529811, 0.018904507998061076, 0.015996122152205527, 0.015026660203587009, 0.015026660203587009, 0.014541929229277752, 0.014541929229277752, 0.014541929229277752, 0.015511391177896268, 0.015511391177896268, 0.015511391177896268, 0.21715947649054776, 0.2981095492001939, 0.3053805138148328, 0.624818225884634, 0.7624818225884634, 0.8429471643238002, 0.8768783325254483, 0.9040232670867668, 0.917595734367426, 0.9365002423654871, 0.9466795928259816, 0.939893359185652, 0.9277750848279205, 0.9108095007270964, 0.8962675714978187, 0.8676684440135725, 0.8114396509936985, 0.6878332525448376, 0.5424139602520601, 0.22491517207949588, 0.18128938439166262, 0.15075133301017934, 0.1269995152690257, 0.1047018904507998, 0.07998061076102762, 0.059621909840038775, 0.05089675230247213, 0.03538536112457586, 0.02666020358700921, 0.025206010664081433, 0.025690741638390694, 0.0232670867668444, 0.024721279689772176, 0.022297624818225885, 0.896752302472128, 0.9146873485215705, 0.9074163839069317, 0.8802714493456132, 0.022297624818225885, 0.024721279689772176, 0.025206010664081433, 0.02617547261269995, 0.0349006301502666, 0.04701890450799806, 0.06398448860882211, 0.06786233640329617, 0.07998061076102762, 0.09694619486185167, 0.1071255453223461, 0.11682016480853126, 0.12506059137178865, 0.1303926320891905, 0.13669413475521086, 0.18225884634028114, 0.18419777023751818, 0.1754726126999515, 0.20164808531265146, 0.19873969946679593, 0.19631604459524965, 0.19486185167232187, 0.20261754726127, 0.20164808531265146, 0.2060106640814348, 0.22443044110518662, 0.2258846340281144, 0.29762481822588466, 0.6461463887542414, 0.7765390208434318, 0.8565196316044595, 0.9209888511875909, 0.9389238972370334, 0.8889966068831798, 0.8269510421715948, 0.7232186136694134, 0.5957343674260785, 0.5433834222006786, 0.23267086766844403, 0.23073194377120698, 0.23364032961706252, 0.2375181774115366, 0.24042656325739215, 0.24285021812893845, 0.2481822588463403, 0.25109064469219583, 0.2573921473582162, 0.26369365002423656, 0.26951042171594763, 0.2801745031507513, 0.3048957828405235, 0.335918565196316, 0.3572467280659234, 0.4217159476490548, 0.7663596703829375], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF961.gap.json b/pfam_gap_rates/DUF961.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..49d54163d0438629f13895552cd5451146a82e8c
--- /dev/null
+++ b/pfam_gap_rates/DUF961.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF962.gap.json b/pfam_gap_rates/DUF962.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..8eff98f1f429776dec100a74f31da01e0da1362a
--- /dev/null
+++ b/pfam_gap_rates/DUF962.gap.json
@@ -0,0 +1 @@
+{"family": "DUF962", "n_seqs": 640, "length": 165, "gap_rates": [0.709375, 0.55, 0.2078125, 0.153125, 0.1296875, 0.1015625, 0.0875, 0.071875, 0.0671875, 0.0671875, 0.0609375, 0.0609375, 0.0609375, 0.0609375, 0.059375, 0.059375, 0.059375, 0.05625, 0.0484375, 0.046875, 0.0453125, 0.0453125, 0.0421875, 0.040625, 0.0359375, 0.0359375, 0.0359375, 0.0359375, 0.0359375, 0.0359375, 0.03125, 0.0296875, 0.03125, 0.03125, 0.0296875, 0.0296875, 0.028125, 0.03125, 0.034375, 0.0359375, 0.03125, 0.0359375, 0.046875, 0.378125, 0.378125, 0.384375, 0.39375, 0.3953125, 0.396875, 0.3984375, 0.4, 0.403125, 0.40625, 0.409375, 0.409375, 0.4125, 0.4140625, 0.41875, 0.421875, 0.421875, 0.421875, 0.421875, 0.421875, 0.425, 0.4390625, 0.4578125, 0.4578125, 0.4734375, 0.49375, 0.5265625, 0.575, 0.6453125, 0.6734375, 0.696875, 0.815625, 0.8765625, 0.9109375, 0.940625, 0.9203125, 0.9, 0.8453125, 0.7359375, 0.6796875, 0.6609375, 0.6078125, 0.5359375, 0.5109375, 0.484375, 0.4671875, 0.4578125, 0.4484375, 0.4296875, 0.425, 0.421875, 0.421875, 0.421875, 0.421875, 0.4203125, 0.41875, 0.4140625, 0.4125, 0.409375, 0.4078125, 0.403125, 0.4015625, 0.4, 0.3984375, 0.3953125, 0.3953125, 0.39375, 0.3828125, 0.378125, 0.3765625, 0.0265625, 0.01875, 0.0125, 0.0140625, 0.0140625, 0.0171875, 0.0140625, 0.0140625, 0.0140625, 0.0140625, 0.0171875, 0.0203125, 0.0203125, 0.0203125, 0.01875, 0.0171875, 0.015625, 0.015625, 0.015625, 0.015625, 0.284375, 0.0203125, 0.0203125, 0.0171875, 0.0171875, 0.0265625, 0.0328125, 0.040625, 0.0390625, 0.0390625, 0.04375, 0.046875, 0.2953125, 0.0640625, 0.05625, 0.0546875, 0.0578125, 0.0578125, 0.0625, 0.0578125, 0.0546875, 0.05625, 0.0546875, 0.05625, 0.059375, 0.06875, 0.08125, 0.0984375, 0.128125, 0.20625, 0.434375, 0.8546875], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DUF966.gap.json b/pfam_gap_rates/DUF966.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..9306ddebd4d1287dd5a2eb3f48ce0a972eeca116
--- /dev/null
+++ b/pfam_gap_rates/DUF966.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DUF98.gap.json b/pfam_gap_rates/DUF98.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e31350206a8ce09c94f1afa835cf4d645d26c015
--- /dev/null
+++ b/pfam_gap_rates/DUF98.gap.json
@@ -0,0 +1 @@
+{"family": "DUF98", "n_seqs": 125, "length": 163, "gap_rates": [0.208, 0.176, 0.096, 0.096, 0.096, 0.096, 0.096, 0.096, 0.096, 0.096, 0.096, 0.096, 0.096, 0.096, 0.12, 0.088, 0.088, 0.08, 0.08, 0.08, 0.088, 0.08, 0.072, 0.072, 0.072, 0.12, 0.12, 0.112, 0.104, 0.08, 0.08, 0.064, 0.08, 0.888, 0.928, 0.888, 0.112, 0.12, 0.088, 0.072, 0.072, 0.064, 0.056, 0.064, 0.072, 0.048, 0.936, 0.92, 0.04, 0.032, 0.032, 0.032, 0.032, 0.032, 0.032, 0.032, 0.032, 0.024, 0.024, 0.024, 0.048, 0.64, 0.248, 0.024, 0.024, 0.016, 0.008, 0.008, 0.008, 0.008, 0.008, 0.008, 0.008, 0.016, 0.008, 0.008, 0.008, 0.008, 0.016, 0.016, 0.016, 0.016, 0.016, 0.016, 0.016, 0.016, 0.624, 0.632, 0.632, 0.608, 0.016, 0.008, 0.008, 0.008, 0.008, 0.008, 0.008, 0.008, 0.008, 0.008, 0.008, 0.024, 0.04, 0.024, 0.016, 0.008, 0.008, 0.008, 0.008, 0.008, 0.016, 0.016, 0.008, 0.008, 0.008, 0.008, 0.032, 0.024, 0.024, 0.824, 0.016, 0.024, 0.04, 0.048, 0.064, 0.056, 0.048, 0.768, 0.712, 0.056, 0.048, 0.04, 0.024, 0.024, 0.032, 0.04, 0.024, 0.024, 0.024, 0.024, 0.024, 0.024, 0.024, 0.024, 0.024, 0.024, 0.024, 0.024, 0.024, 0.024, 0.024, 0.024, 0.024, 0.024, 0.032, 0.088, 0.12, 0.344, 0.376, 0.44, 0.456, 0.472, 0.544], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DXP_reductoisom.gap.json b/pfam_gap_rates/DXP_reductoisom.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..7ff4a9cd5af9722895ce678a8f895f6e7f295c25
--- /dev/null
+++ b/pfam_gap_rates/DXP_reductoisom.gap.json
@@ -0,0 +1 @@
+{"family": "DXP_reductoisom", "n_seqs": 1700, "length": 133, "gap_rates": [0.11647058823529412, 0.06588235294117648, 0.05941176470588235, 0.057058823529411766, 0.057058823529411766, 0.05647058823529412, 0.05647058823529412, 0.05647058823529412, 0.05647058823529412, 0.05647058823529412, 0.05588235294117647, 0.05588235294117647, 0.05529411764705883, 0.05529411764705883, 0.05529411764705883, 0.05529411764705883, 0.054705882352941174, 0.054705882352941174, 0.05411764705882353, 0.05352941176470588, 0.05411764705882353, 0.054705882352941174, 0.1811764705882353, 0.10764705882352942, 0.052941176470588235, 0.052941176470588235, 0.05176470588235294, 0.05176470588235294, 0.051176470588235295, 0.05058823529411765, 0.05058823529411765, 0.05058823529411765, 0.9011764705882352, 0.05058823529411765, 0.05058823529411765, 0.051176470588235295, 0.05176470588235294, 0.05235294117647059, 0.05235294117647059, 0.051176470588235295, 0.05176470588235294, 0.051176470588235295, 0.051176470588235295, 0.051176470588235295, 0.05058823529411765, 0.05058823529411765, 0.05058823529411765, 0.05176470588235294, 0.054705882352941174, 0.05823529411764706, 0.06352941176470588, 0.06764705882352941, 0.0688235294117647, 0.0711764705882353, 0.08058823529411764, 0.07882352941176471, 0.08294117647058824, 0.08647058823529412, 0.08941176470588236, 0.09, 0.08705882352941176, 0.0888235294117647, 0.09117647058823529, 0.09176470588235294, 0.09235294117647058, 0.09588235294117647, 0.10294117647058823, 0.42823529411764705, 0.6029411764705882, 0.36764705882352944, 0.30941176470588233, 0.2664705882352941, 0.9376470588235294, 0.9423529411764706, 0.9211764705882353, 0.15529411764705883, 0.12823529411764706, 0.10941176470588235, 0.09647058823529411, 0.07764705882352942, 0.06411764705882353, 0.06, 0.058823529411764705, 0.054705882352941174, 0.051176470588235295, 0.05058823529411765, 0.05, 0.04941176470588235, 0.0488235294117647, 0.04941176470588235, 0.051176470588235295, 0.21764705882352942, 0.06352941176470588, 0.05235294117647059, 0.04647058823529412, 0.045294117647058825, 0.045294117647058825, 0.045294117647058825, 0.04470588235294118, 0.04470588235294118, 0.04470588235294118, 0.04470588235294118, 0.04411764705882353, 0.04411764705882353, 0.04352941176470588, 0.04411764705882353, 0.04411764705882353, 0.04411764705882353, 0.04411764705882353, 0.04352941176470588, 0.04352941176470588, 0.04411764705882353, 0.04470588235294118, 0.04470588235294118, 0.04470588235294118, 0.04470588235294118, 0.04470588235294118, 0.04470588235294118, 0.04470588235294118, 0.04470588235294118, 0.04470588235294118, 0.04470588235294118, 0.04470588235294118, 0.04470588235294118, 0.04470588235294118, 0.04470588235294118, 0.04470588235294118, 0.04470588235294118, 0.04588235294117647, 0.04588235294117647, 0.04588235294117647, 0.04647058823529412, 0.061764705882352944], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DcuC.gap.json b/pfam_gap_rates/DcuC.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..579ba8c44e6242277886471180cb23b55348e30c
--- /dev/null
+++ b/pfam_gap_rates/DcuC.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/DegT_DnrJ_EryC1.gap.json b/pfam_gap_rates/DegT_DnrJ_EryC1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..bf6ff5d0e62c72cc07faa57d79c0b8f60ba22230
--- /dev/null
+++ b/pfam_gap_rates/DegT_DnrJ_EryC1.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Desulfoferrod_N.gap.json b/pfam_gap_rates/Desulfoferrod_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..93c71a8bd48839bdfd228a1c3fa79926224786eb
--- /dev/null
+++ b/pfam_gap_rates/Desulfoferrod_N.gap.json
@@ -0,0 +1 @@
+{"family": "Desulfoferrod_N", "n_seqs": 320, "length": 36, "gap_rates": [0.803125, 0.496875, 0.378125, 0.271875, 0.178125, 0.075, 0.028125, 0.015625, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.003125, 0.003125, 0.0, 0.0, 0.003125, 0.00625, 0.0125, 0.015625, 0.00625, 0.0, 0.003125, 0.0, 0.0, 0.0, 0.0, 0.003125, 0.003125, 0.00625, 0.153125, 0.63125], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Dimerisation2.gap.json b/pfam_gap_rates/Dimerisation2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..372500a7394376e6a1631b15578969d7a6fab761
--- /dev/null
+++ b/pfam_gap_rates/Dimerisation2.gap.json
@@ -0,0 +1 @@
+{"family": "Dimerisation2", "n_seqs": 521, "length": 89, "gap_rates": [0.33589251439539347, 0.2744721689059501, 0.2072936660268714, 0.1708253358925144, 0.15547024952015356, 0.14395393474088292, 0.1362763915547025, 0.12092130518234165, 0.11516314779270634, 0.09980806142034548, 0.08061420345489444, 0.06525911708253358, 0.030710172744721688, 0.015355086372360844, 0.013435700575815739, 0.0019193857965451055, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.9155470249520153, 0.7888675623800384, 0.12859884836852206, 0.003838771593090211, 0.0019193857965451055, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.003838771593090211, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0019193857965451055, 0.0019193857965451055, 0.003838771593090211, 0.003838771593090211, 0.003838771593090211, 0.003838771593090211, 0.003838771593090211, 0.003838771593090211, 0.005758157389635317, 0.007677543186180422, 0.046065259117082535, 0.08253358925143954, 0.8138195777351248, 0.8214971209213052, 0.7946257197696737, 0.5873320537428023, 0.1401151631477927, 0.11132437619961612, 0.09980806142034548, 0.1017274472168906, 0.13051823416506717, 0.1362763915547025, 0.1362763915547025, 0.14587332053742802, 0.1708253358925144, 0.19769673704414586, 0.23032629558541268, 0.2802303262955854, 0.31285988483685223, 0.31669865642994244, 0.32821497120921306, 0.3493282149712092, 0.3838771593090211, 0.45489443378119004, 0.564299424184261, 0.927063339731286], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DinB_2.gap.json b/pfam_gap_rates/DinB_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..367202407b2edf09553823575f95b75452533c7b
--- /dev/null
+++ b/pfam_gap_rates/DinB_2.gap.json
@@ -0,0 +1 @@
+{"family": "DinB_2", "n_seqs": 2259, "length": 192, "gap_rates": [0.8800354138999558, 0.5967242142540947, 0.49889331562638334, 0.41389995573262506, 0.35502434705621955, 0.3103142983621071, 0.26604692341744135, 0.23019034971226207, 0.19344842850818947, 0.17042939353696326, 0.13811420982735723, 0.11730854360336432, 0.08897742363877822, 0.09694555112881806, 0.07259849490925188, 0.05754758742806552, 0.04957945993802568, 0.04426737494466578, 0.03629924745462594, 0.03231518370960602, 0.0283311199645861, 0.02611775121735281, 0.02478972996901284, 0.021248339973439574, 0.08100929614873838, 0.02080566622399292, 0.011509517485613104, 0.009738822487826471, 0.008853474988933156, 0.00619743249225321, 0.005754758742806552, 0.005754758742806552, 0.005754758742806552, 0.005312084993359893, 0.004869411243913236, 0.004869411243913236, 0.004869411243913236, 0.004869411243913236, 0.004426737494466578, 0.004426737494466578, 0.004426737494466578, 0.9446657813191678, 0.007082779991146525, 0.005312084993359893, 0.005312084993359893, 0.8853474988933157, 0.005754758742806552, 0.005312084993359893, 0.007525453740593183, 0.00619743249225321, 0.005754758742806552, 0.005754758742806552, 0.004869411243913236, 0.4134572819831784, 0.4767596281540505, 0.6918990703851262, 0.7414785303231518, 0.7706949977866312, 0.8021248339973439, 0.8277999114652501, 0.8517042939353696, 0.8623284639220894, 0.870739265161576, 0.9335989375830013, 0.8897742363877822, 0.8685258964143426, 0.8565737051792829, 0.8432934926958832, 0.816290393979637, 0.7870739265161576, 0.7569721115537849, 0.7220008853474988, 0.648074369189907, 0.4435590969455511, 0.35325365205843295, 0.00619743249225321, 0.20849933598937584, 0.17706949977866313, 0.15980522355024346, 0.04426737494466578, 0.5551128818061088, 0.5949535192563081, 0.6445329791943337, 0.6963258078795928, 0.7565294378043382, 0.7835325365205843, 0.8353253652058433, 0.8769366976538291, 0.9101372288623285, 0.9287295263390881, 0.9442231075697212, 0.9375830013280213, 0.9163346613545816, 0.8893315626383356, 0.8459495351925631, 0.8056662239929172, 0.7702523240371846, 0.7281983178397521, 0.6733067729083665, 0.6113324479858344, 0.5719344842850819, 0.5298804780876494, 0.05533421868083223, 0.10624169986719788, 0.10225763612217796, 0.09915891987605135, 0.09428950863213811, 0.10270030987162461, 0.09561752988047809, 0.0934041611332448, 0.007525453740593183, 0.5449313855688358, 0.5781319167773351, 0.6131031429836211, 0.6848162903939796, 0.8410801239486498, 0.869411243913236, 0.897742363877822, 0.9428950863213812, 0.9473218238158477, 0.9291722000885347, 0.8884462151394422, 0.8534749889331562, 0.8078795927401505, 0.6370075254537406, 0.5896414342629482, 0.567950420540062, 0.5294378043382028, 0.005754758742806552, 0.005754758742806552, 0.005754758742806552, 0.006640106241699867, 0.00796812749003984, 0.004869411243913236, 0.004869411243913236, 0.004426737494466578, 0.004869411243913236, 0.004869411243913236, 0.004426737494466578, 0.005754758742806552, 0.005312084993359893, 0.006640106241699867, 0.006640106241699867, 0.006640106241699867, 0.007082779991146525, 0.007082779991146525, 0.007525453740593183, 0.007525453740593183, 0.006640106241699867, 0.00619743249225321, 0.00619743249225321, 0.09119079238601151, 0.08322266489597167, 0.08942009738822487, 0.2527667109340416, 0.20318725099601595, 0.17972554227534307, 0.14342629482071714, 0.1522797698096503, 0.14696768481629038, 0.15980522355024346, 0.1571491810535635, 0.15670650730411687, 0.16600265604249667, 0.8530323151837096, 0.7467906153165117, 0.6139884904825144, 0.3784860557768924, 0.2695883134130146, 0.23948649845064188, 0.21248339973439576, 0.19167773351040282, 0.11199645861000443, 0.07702523240371846, 0.04780876494023904, 0.043824701195219126, 0.04028331119964586, 0.036741921204072596, 0.035413899955732624, 0.03718459495351926, 0.038955289951305885, 0.04072598494909252, 0.043824701195219126, 0.043382027445772464, 0.04648074369189907, 0.05223550243470562, 0.054006197432492256, 0.054891544931385566, 0.06330234617087206, 0.09694555112881806, 0.23948649845064188, 0.4816290393979637], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Disintegrin.gap.json b/pfam_gap_rates/Disintegrin.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..607b3fb2c75efc8a75044facc07a5a0dd8bfd3fc
--- /dev/null
+++ b/pfam_gap_rates/Disintegrin.gap.json
@@ -0,0 +1 @@
+{"family": "Disintegrin", "n_seqs": 819, "length": 95, "gap_rates": [0.0927960927960928, 0.047619047619047616, 0.03418803418803419, 0.026862026862026864, 0.02564102564102564, 0.02442002442002442, 0.0231990231990232, 0.02197802197802198, 0.02197802197802198, 0.0927960927960928, 0.10866910866910867, 0.05372405372405373, 0.052503052503052504, 0.894993894993895, 0.05128205128205128, 0.06349206349206349, 0.9169719169719169, 0.8461538461538461, 0.4481074481074481, 0.015873015873015872, 0.003663003663003663, 0.002442002442002442, 0.003663003663003663, 0.002442002442002442, 0.8522588522588522, 0.8522588522588522, 0.8742368742368742, 0.9255189255189256, 0.9316239316239316, 0.9145299145299145, 0.8705738705738706, 0.8522588522588522, 0.8522588522588522, 0.30036630036630035, 0.054945054945054944, 0.001221001221001221, 0.001221001221001221, 0.001221001221001221, 0.001221001221001221, 0.001221001221001221, 0.001221001221001221, 0.0, 0.002442002442002442, 0.001221001221001221, 0.001221001221001221, 0.003663003663003663, 0.7374847374847375, 0.7081807081807082, 0.001221001221001221, 0.873015873015873, 0.8547008547008547, 0.001221001221001221, 0.001221001221001221, 0.001221001221001221, 0.001221001221001221, 0.001221001221001221, 0.568986568986569, 0.0, 0.8217338217338217, 0.0, 0.0, 0.001221001221001221, 0.9487179487179487, 0.9474969474969475, 0.001221001221001221, 0.006105006105006105, 0.03296703296703297, 0.003663003663003663, 0.003663003663003663, 0.006105006105006105, 0.006105006105006105, 0.004884004884004884, 0.004884004884004884, 0.15873015873015872, 0.17582417582417584, 0.009768009768009768, 0.05372405372405373, 0.6007326007326007, 0.008547008547008548, 0.007326007326007326, 0.008547008547008548, 0.007326007326007326, 0.009768009768009768, 0.009768009768009768, 0.01221001221001221, 0.014652014652014652, 0.015873015873015872, 0.019536019536019536, 0.02197802197802198, 0.020757020757020756, 0.02197802197802198, 0.02442002442002442, 0.026862026862026864, 0.06105006105006105, 0.452991452991453], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DivIC.gap.json b/pfam_gap_rates/DivIC.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..9b0a28a2271f2b9e073f5434a48d8b179969c16d
--- /dev/null
+++ b/pfam_gap_rates/DivIC.gap.json
@@ -0,0 +1 @@
+{"family": "DivIC", "n_seqs": 2077, "length": 82, "gap_rates": [0.6307173808377468, 0.41405873856523834, 0.21762156957149736, 0.14058738565238324, 0.11218103033220991, 0.0967741935483871, 0.08377467501203659, 0.07558979297063072, 0.06788637457871931, 0.061627347135291284, 0.05729417428984112, 0.05440539239287434, 0.05055368319691863, 0.05055368319691863, 0.04285026480500722, 0.03803562831006259, 0.029850746268656716, 0.025036109773712085, 0.021665864227250843, 0.01781415503129514, 0.014443909484833895, 0.012518054886856042, 0.01059220028887819, 0.0091478093403948, 0.004814636494944632, 0.004333172845450169, 0.002888781896966779, 0.002888781896966779, 0.002407318247472316, 0.002407318247472316, 0.0014443909484833895, 0.0014443909484833895, 0.0019258545979778526, 0.0014443909484833895, 0.0014443909484833895, 0.0014443909484833895, 0.0014443909484833895, 0.0014443909484833895, 0.0009629272989889263, 0.00048146364949446316, 0.00048146364949446316, 0.00048146364949446316, 0.0009629272989889263, 0.0014443909484833895, 0.0014443909484833895, 0.00048146364949446316, 0.002888781896966779, 0.0009629272989889263, 0.0009629272989889263, 0.0014443909484833895, 0.6047183437650457, 0.008666345690900338, 0.8805970149253731, 0.8849301877708233, 0.8743379874819451, 0.004814636494944632, 0.004333172845450169, 0.002888781896966779, 0.004814636494944632, 0.0038517091959557053, 0.0038517091959557053, 0.004814636494944632, 0.004814636494944632, 0.004814636494944632, 0.004814636494944632, 0.09388541165142032, 0.007221954742416947, 0.0077034183919114105, 0.008666345690900338, 0.009629272989889264, 0.013480982185844969, 0.0182956186807896, 0.029850746268656716, 0.038517091959557055, 0.05055368319691863, 0.058738565238324505, 0.06740491092922485, 0.11266249398170439, 0.16947520462205104, 0.2835820895522388, 0.44390948483389503, 0.6316803081367357], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DltD_M.gap.json b/pfam_gap_rates/DltD_M.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e0c12fbcba7a10ac4bd179f204c8c58d2cdb601a
--- /dev/null
+++ b/pfam_gap_rates/DltD_M.gap.json
@@ -0,0 +1 @@
+{"family": "DltD_M", "n_seqs": 143, "length": 177, "gap_rates": [0.1258741258741259, 0.027972027972027972, 0.027972027972027972, 0.027972027972027972, 0.027972027972027972, 0.027972027972027972, 0.02097902097902098, 0.02097902097902098, 0.02097902097902098, 0.02097902097902098, 0.02097902097902098, 0.02097902097902098, 0.02097902097902098, 0.02097902097902098, 0.02097902097902098, 0.02097902097902098, 0.02097902097902098, 0.027972027972027972, 0.07692307692307693, 0.03496503496503497, 0.027972027972027972, 0.03496503496503497, 0.02097902097902098, 0.02097902097902098, 0.02097902097902098, 0.02097902097902098, 0.013986013986013986, 0.013986013986013986, 0.013986013986013986, 0.013986013986013986, 0.013986013986013986, 0.013986013986013986, 0.013986013986013986, 0.013986013986013986, 0.013986013986013986, 0.013986013986013986, 0.013986013986013986, 0.013986013986013986, 0.013986013986013986, 0.8951048951048951, 0.02097902097902098, 0.027972027972027972, 0.013986013986013986, 0.013986013986013986, 0.013986013986013986, 0.013986013986013986, 0.013986013986013986, 0.013986013986013986, 0.006993006993006993, 0.006993006993006993, 0.006993006993006993, 0.006993006993006993, 0.006993006993006993, 0.006993006993006993, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.2937062937062937, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.8041958041958042, 0.24475524475524477, 0.25874125874125875, 0.0979020979020979, 0.027972027972027972, 0.027972027972027972, 0.03496503496503497, 0.03496503496503497, 0.027972027972027972, 0.02097902097902098, 0.02097902097902098, 0.013986013986013986, 0.013986013986013986, 0.013986013986013986, 0.013986013986013986, 0.013986013986013986, 0.02097902097902098, 0.02097902097902098, 0.02097902097902098, 0.013986013986013986, 0.04195804195804196, 0.04895104895104895, 0.07692307692307693, 0.06293706293706294, 0.04895104895104895, 0.055944055944055944, 0.04895104895104895, 0.04895104895104895, 0.03496503496503497, 0.027972027972027972, 0.027972027972027972, 0.027972027972027972, 0.6363636363636364, 0.6223776223776224, 0.6083916083916084, 0.5384615384615384, 0.02097902097902098, 0.02097902097902098, 0.02097902097902098, 0.02097902097902098, 0.02097902097902098, 0.02097902097902098, 0.02097902097902098, 0.02097902097902098, 0.02097902097902098, 0.027972027972027972, 0.027972027972027972, 0.916083916083916, 0.8811188811188811, 0.2097902097902098, 0.03496503496503497, 0.027972027972027972, 0.03496503496503497, 0.03496503496503497, 0.03496503496503497, 0.09090909090909091, 0.08391608391608392, 0.5104895104895105, 0.9090909090909091, 0.8531468531468531, 0.09090909090909091, 0.04895104895104895, 0.04895104895104895, 0.04895104895104895, 0.04895104895104895, 0.04895104895104895, 0.04195804195804196, 0.03496503496503497, 0.04895104895104895, 0.06993006993006994, 0.11188811188811189, 0.3006993006993007, 0.26573426573426573, 0.2097902097902098, 0.13986013986013987, 0.04195804195804196, 0.04195804195804196, 0.04195804195804196, 0.04195804195804196, 0.04195804195804196, 0.04895104895104895, 0.04895104895104895, 0.04895104895104895, 0.04895104895104895, 0.04895104895104895, 0.055944055944055944, 0.06293706293706294, 0.06293706293706294, 0.06993006993006994, 0.07692307692307693, 0.08391608391608392, 0.09090909090909091, 0.09090909090909091, 0.0979020979020979, 0.1048951048951049, 0.1258741258741259, 0.16783216783216784], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DltD_N.gap.json b/pfam_gap_rates/DltD_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b41bd356af2e652b9b95603c41baf16acedad2c9
--- /dev/null
+++ b/pfam_gap_rates/DltD_N.gap.json
@@ -0,0 +1 @@
+{"family": "DltD_N", "n_seqs": 104, "length": 62, "gap_rates": [0.6538461538461539, 0.18269230769230768, 0.125, 0.10576923076923077, 0.10576923076923077, 0.08653846153846154, 0.07692307692307693, 0.057692307692307696, 0.04807692307692308, 0.028846153846153848, 0.019230769230769232, 0.019230769230769232, 0.019230769230769232, 0.019230769230769232, 0.019230769230769232, 0.019230769230769232, 0.019230769230769232, 0.019230769230769232, 0.019230769230769232, 0.019230769230769232, 0.019230769230769232, 0.019230769230769232, 0.019230769230769232, 0.019230769230769232, 0.019230769230769232, 0.3942307692307692, 0.8269230769230769, 0.8173076923076923, 0.009615384615384616, 0.009615384615384616, 0.009615384615384616, 0.009615384615384616, 0.009615384615384616, 0.009615384615384616, 0.009615384615384616, 0.009615384615384616, 0.009615384615384616, 0.009615384615384616, 0.009615384615384616, 0.009615384615384616, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.028846153846153848, 0.009615384615384616, 0.09615384615384616, 0.009615384615384616, 0.009615384615384616, 0.009615384615384616, 0.019230769230769232, 0.028846153846153848, 0.057692307692307696], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Docking.gap.json b/pfam_gap_rates/Docking.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d94de0c3cbc0ae40baaccc73a7d9745c72495618
--- /dev/null
+++ b/pfam_gap_rates/Docking.gap.json
@@ -0,0 +1 @@
+{"family": "Docking", "n_seqs": 204, "length": 26, "gap_rates": [0.5343137254901961, 0.18627450980392157, 0.07352941176470588, 0.014705882352941176, 0.014705882352941176, 0.00980392156862745, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.004901960784313725, 0.0196078431372549, 0.024509803921568627, 0.058823529411764705, 0.19117647058823528], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DsbC.gap.json b/pfam_gap_rates/DsbC.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..5cb4678a29f86f7c297244546d7e91e16b7d34de
--- /dev/null
+++ b/pfam_gap_rates/DsbC.gap.json
@@ -0,0 +1 @@
+{"family": "DsbC", "n_seqs": 950, "length": 140, "gap_rates": [0.7210526315789474, 0.6473684210526316, 0.6126315789473684, 0.6031578947368421, 0.5873684210526315, 0.5726315789473684, 0.5557894736842105, 0.54, 0.5294736842105263, 0.5105263157894737, 0.5463157894736842, 0.5378947368421053, 0.47578947368421054, 0.3568421052631579, 0.9084210526315789, 0.9389473684210526, 0.5652631578947368, 0.1431578947368421, 0.10105263157894737, 0.08, 0.06526315789473684, 0.05263157894736842, 0.031578947368421054, 0.02526315789473684, 0.018947368421052633, 0.017894736842105262, 0.015789473684210527, 0.015789473684210527, 0.014736842105263158, 0.01368421052631579, 0.01263157894736842, 0.011578947368421053, 0.011578947368421053, 0.011578947368421053, 0.011578947368421053, 0.011578947368421053, 0.01263157894736842, 0.011578947368421053, 0.011578947368421053, 0.011578947368421053, 0.011578947368421053, 0.6031578947368421, 0.4147368421052632, 0.17157894736842105, 0.1694736842105263, 0.38, 0.3936842105263158, 0.7010526315789474, 0.9168421052631579, 0.9473684210526315, 0.8136842105263158, 0.4147368421052632, 0.3821052631578947, 0.3757894736842105, 0.008421052631578947, 0.018947368421052633, 0.021052631578947368, 0.01263157894736842, 0.01263157894736842, 0.010526315789473684, 0.011578947368421053, 0.023157894736842106, 0.9242105263157895, 0.82, 0.27789473684210525, 0.05157894736842105, 0.015789473684210527, 0.008421052631578947, 0.004210526315789474, 0.004210526315789474, 0.003157894736842105, 0.003157894736842105, 0.004210526315789474, 0.002105263157894737, 0.9421052631578948, 0.01368421052631579, 0.010526315789473684, 0.00631578947368421, 0.01263157894736842, 0.010526315789473684, 0.03894736842105263, 0.04421052631578947, 0.3357894736842105, 0.29789473684210527, 0.3589473684210526, 0.03263157894736842, 0.016842105263157894, 0.009473684210526316, 0.004210526315789474, 0.003157894736842105, 0.003157894736842105, 0.003157894736842105, 0.003157894736842105, 0.003157894736842105, 0.002105263157894737, 0.003157894736842105, 0.002105263157894737, 0.002105263157894737, 0.002105263157894737, 0.002105263157894737, 0.003157894736842105, 0.003157894736842105, 0.004210526315789474, 0.005263157894736842, 0.26421052631578945, 0.6126315789473684, 0.8147368421052632, 0.8947368421052632, 0.7747368421052632, 0.4421052631578947, 0.16526315789473683, 0.049473684210526316, 0.031578947368421054, 0.02736842105263158, 0.00631578947368421, 0.002105263157894737, 0.002105263157894737, 0.002105263157894737, 0.002105263157894737, 0.002105263157894737, 0.003157894736842105, 0.003157894736842105, 0.003157894736842105, 0.003157894736842105, 0.003157894736842105, 0.9378947368421052, 0.5968421052631578, 0.31473684210526315, 0.003157894736842105, 0.003157894736842105, 0.003157894736842105, 0.005263157894736842, 0.009473684210526316, 0.021052631578947368, 0.05157894736842105, 0.10631578947368421, 0.17684210526315788, 0.28210526315789475, 0.4336842105263158, 0.6463157894736842], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DsbC_N.gap.json b/pfam_gap_rates/DsbC_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..8c703533489508ffb745251b9068367842913cc0
--- /dev/null
+++ b/pfam_gap_rates/DsbC_N.gap.json
@@ -0,0 +1 @@
+{"family": "DsbC_N", "n_seqs": 375, "length": 60, "gap_rates": [0.5733333333333334, 0.344, 0.22933333333333333, 0.14666666666666667, 0.13866666666666666, 0.13066666666666665, 0.12, 0.096, 0.184, 0.24, 0.776, 0.029333333333333333, 0.024, 0.021333333333333333, 0.018666666666666668, 0.016, 0.005333333333333333, 0.005333333333333333, 0.0026666666666666666, 0.0026666666666666666, 0.0026666666666666666, 0.0026666666666666666, 0.018666666666666668, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0026666666666666666, 0.7733333333333333, 0.0026666666666666666, 0.0, 0.9253333333333333, 0.9413333333333334, 0.9333333333333333, 0.912, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.008, 0.0, 0.0, 0.0, 0.0, 0.005333333333333333, 0.005333333333333333, 0.010666666666666666, 0.016, 0.024, 0.058666666666666666, 0.128, 0.2613333333333333, 0.6506666666666666], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/DuoxA.gap.json b/pfam_gap_rates/DuoxA.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..8f37cba7f45e113ff3a0c422970e87db5168bb45
--- /dev/null
+++ b/pfam_gap_rates/DuoxA.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Dynactin_p62.gap.json b/pfam_gap_rates/Dynactin_p62.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..3401d94098ea1df57b72b19eee595b719f85a807
--- /dev/null
+++ b/pfam_gap_rates/Dynactin_p62.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/E1_FCCH.gap.json b/pfam_gap_rates/E1_FCCH.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..768d2058276910a7ea38d23960d33f197eaa0e55
--- /dev/null
+++ b/pfam_gap_rates/E1_FCCH.gap.json
@@ -0,0 +1 @@
+{"family": "E1_FCCH", "n_seqs": 460, "length": 73, "gap_rates": [0.5130434782608696, 0.2, 0.06739130434782609, 0.04782608695652174, 0.03260869565217391, 0.030434782608695653, 0.030434782608695653, 0.02826086956521739, 0.02826086956521739, 0.02826086956521739, 0.017391304347826087, 0.017391304347826087, 0.010869565217391304, 0.006521739130434782, 0.006521739130434782, 0.006521739130434782, 0.006521739130434782, 0.006521739130434782, 0.006521739130434782, 0.006521739130434782, 0.006521739130434782, 0.006521739130434782, 0.006521739130434782, 0.006521739130434782, 0.006521739130434782, 0.006521739130434782, 0.008695652173913044, 0.006521739130434782, 0.006521739130434782, 0.0, 0.0, 0.004347826086956522, 0.004347826086956522, 0.002173913043478261, 0.0, 0.004347826086956522, 0.006521739130434782, 0.15217391304347827, 0.004347826086956522, 0.004347826086956522, 0.002173913043478261, 0.002173913043478261, 0.002173913043478261, 0.0, 0.0, 0.0, 0.0, 0.0, 0.002173913043478261, 0.002173913043478261, 0.002173913043478261, 0.002173913043478261, 0.7065217391304348, 0.008695652173913044, 0.004347826086956522, 0.9434782608695652, 0.008695652173913044, 0.008695652173913044, 0.006521739130434782, 0.008695652173913044, 0.008695652173913044, 0.006521739130434782, 0.006521739130434782, 0.015217391304347827, 0.008695652173913044, 0.013043478260869565, 0.013043478260869565, 0.015217391304347827, 0.017391304347826087, 0.02608695652173913, 0.03260869565217391, 0.041304347826086954, 0.45], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/E2F_CC-MB.gap.json b/pfam_gap_rates/E2F_CC-MB.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b2483fd8fb9f16daec9f5152d4196e16573d83c8
--- /dev/null
+++ b/pfam_gap_rates/E2F_CC-MB.gap.json
@@ -0,0 +1 @@
+{"family": "E2F_CC-MB", "n_seqs": 380, "length": 115, "gap_rates": [0.28421052631578947, 0.17894736842105263, 0.1394736842105263, 0.13157894736842105, 0.11578947368421053, 0.10263157894736842, 0.10263157894736842, 0.1, 0.09736842105263158, 0.09736842105263158, 0.09210526315789473, 0.09210526315789473, 0.0868421052631579, 0.08421052631578947, 0.08421052631578947, 0.08421052631578947, 0.08157894736842106, 0.07631578947368421, 0.07894736842105263, 0.08157894736842106, 0.07894736842105263, 0.07631578947368421, 0.07368421052631578, 0.07368421052631578, 0.06842105263157895, 0.06842105263157895, 0.06578947368421052, 0.07368421052631578, 0.07105263157894737, 0.9447368421052632, 0.06842105263157895, 0.06842105263157895, 0.06578947368421052, 0.06578947368421052, 0.060526315789473685, 0.060526315789473685, 0.05, 0.18947368421052632, 0.8973684210526316, 0.9315789473684211, 0.9473684210526315, 0.9394736842105263, 0.9026315789473685, 0.23157894736842105, 0.14736842105263157, 0.02631578947368421, 0.042105263157894736, 0.039473684210526314, 0.042105263157894736, 0.04473684210526316, 0.039473684210526314, 0.039473684210526314, 0.039473684210526314, 0.039473684210526314, 0.2578947368421053, 0.2578947368421053, 0.04473684210526316, 0.03684210526315789, 0.02631578947368421, 0.02894736842105263, 0.02894736842105263, 0.02631578947368421, 0.02631578947368421, 0.02894736842105263, 0.02894736842105263, 0.02631578947368421, 0.02631578947368421, 0.02631578947368421, 0.02631578947368421, 0.02631578947368421, 0.02631578947368421, 0.02631578947368421, 0.02631578947368421, 0.02631578947368421, 0.02631578947368421, 0.02894736842105263, 0.031578947368421054, 0.034210526315789476, 0.03684210526315789, 0.9289473684210526, 0.04473684210526316, 0.5026315789473684, 0.5657894736842105, 0.718421052631579, 0.6342105263157894, 0.5184210526315789, 0.4921052631578947, 0.2, 0.8552631578947368, 0.8736842105263158, 0.8973684210526316, 0.9394736842105263, 0.8842105263157894, 0.8552631578947368, 0.8552631578947368, 0.0868421052631579, 0.08157894736842106, 0.0868421052631579, 0.07631578947368421, 0.07105263157894737, 0.07105263157894737, 0.07368421052631578, 0.07631578947368421, 0.07894736842105263, 0.08421052631578947, 0.09210526315789473, 0.10263157894736842, 0.10263157894736842, 0.10526315789473684, 0.11315789473684211, 0.11578947368421053, 0.12631578947368421, 0.1394736842105263, 0.16578947368421051, 0.6289473684210526], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/ECF_trnsprt.gap.json b/pfam_gap_rates/ECF_trnsprt.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..429a494e62e981791220ab554fb13a75b33432c1
--- /dev/null
+++ b/pfam_gap_rates/ECF_trnsprt.gap.json
@@ -0,0 +1 @@
+{"family": "ECF_trnsprt", "n_seqs": 1533, "length": 214, "gap_rates": [0.461839530332681, 0.22765818656229614, 0.09654272667971298, 0.06653620352250489, 0.04892367906066536, 0.038486627527723416, 0.033268101761252444, 0.0273972602739726, 0.025440313111545987, 0.02217873450750163, 0.021526418786692758, 0.021526418786692758, 0.020874103065883887, 0.020874103065883887, 0.020221787345075015, 0.0182648401826484, 0.0182648401826484, 0.35812133072407043, 0.8649706457925636, 0.9478147423352903, 0.6379647749510763, 0.33659491193737767, 0.299412915851272, 0.5055446836268754, 0.2309197651663405, 0.07045009784735812, 0.029354207436399216, 0.02609262883235486, 0.028049575994781473, 0.03457273320287019, 0.16634050880626222, 0.060665362035225046, 0.8016960208741031, 0.9041095890410958, 0.9399869536855838, 0.9295499021526419, 0.87279843444227, 0.695368558382257, 0.055446836268754074, 0.015003261578604044, 0.009784735812133072, 0.0091324200913242, 0.007175472928897586, 0.007175472928897586, 0.006523157208088715, 0.007175472928897586, 0.007175472928897586, 0.007175472928897586, 0.0228310502283105, 0.024135681669928244, 0.006523157208088715, 0.005870841487279843, 0.005870841487279843, 0.005870841487279843, 0.005870841487279843, 0.005870841487279843, 0.005870841487279843, 0.005870841487279843, 0.0045662100456621, 0.0045662100456621, 0.005218525766470972, 0.0045662100456621, 0.0045662100456621, 0.0045662100456621, 0.006523157208088715, 0.8082191780821918, 0.8108284409654273, 0.806914546640574, 0.0032615786040443573, 0.003913894324853229, 0.002609262883235486, 0.002609262883235486, 0.002609262883235486, 0.002609262883235486, 0.002609262883235486, 0.002609262883235486, 0.40574037834311805, 0.17221135029354206, 0.06588388780169602, 0.091324200913242, 0.23222439660795824, 0.2191780821917808, 0.11219830397912589, 0.1715590345727332, 0.37181996086105673, 0.46053489889106325, 0.410958904109589, 0.7351598173515982, 0.8140900195694716, 0.8891063274624919, 0.908675799086758, 0.9302022178734507, 0.9386823222439661, 0.9478147423352903, 0.9328114807566862, 0.913894324853229, 0.8923679060665362, 0.8845401174168297, 0.7840834964122635, 0.48336594911937375, 0.003913894324853229, 0.0032615786040443573, 0.0032615786040443573, 0.0032615786040443573, 0.0032615786040443573, 0.0032615786040443573, 0.0032615786040443573, 0.0032615786040443573, 0.0032615786040443573, 0.0032615786040443573, 0.0045662100456621, 0.0045662100456621, 0.0032615786040443573, 0.002609262883235486, 0.003913894324853229, 0.9399869536855838, 0.04044357469015003, 0.016960208741030658, 0.020221787345075015, 0.3789954337899543, 0.3476842791911285, 0.09197651663405088, 0.055446836268754074, 0.06327462491846053, 0.07501630789302022, 0.10763209393346379, 0.13176777560339203, 0.23026744944553162, 0.2191780821917808, 0.2987606001304631, 0.928897586431833, 0.943900848010437, 0.9106327462491846, 0.06457925636007827, 0.04044357469015003, 0.021526418786692758, 0.011741682974559686, 0.0091324200913242, 0.010437051532941943, 0.008480104370515329, 0.009784735812133072, 0.007827788649706457, 0.007175472928897586, 0.0091324200913242, 0.0091324200913242, 0.009784735812133072, 0.0091324200913242, 0.0091324200913242, 0.011089367253750815, 0.01304631441617743, 0.024135681669928244, 0.037834311806914545, 0.0502283105022831, 0.03587736464448793, 0.03065883887801696, 0.030006523157208087, 0.91324200913242, 0.09197651663405088, 0.08414872798434442, 0.07827788649706457, 0.07110241356816699, 0.2557077625570776, 0.42204827136333983, 0.390737116764514, 0.3639921722113503, 0.37573385518590996, 0.3750815394651011, 0.4279191128506197, 0.42204827136333983, 0.4096542726679713, 0.40834964122635353, 0.4592302674494455, 0.44422700587084146, 0.3770384866275277, 0.7168949771689498, 0.7338551859099804, 0.7579908675799086, 0.8166992824527071, 0.9445531637312459, 0.8336594911937377, 0.7873450750163079, 0.7495107632093934, 0.7292889758643183, 0.6934116112198304, 0.3131115459882583, 0.09523809523809523, 0.07566862361382909, 0.05805609915198956, 0.05218525766470972, 0.047619047619047616, 0.04957599478147423, 0.051532941943900845, 0.050880626223091974, 0.05218525766470972, 0.05414220482713633, 0.05675146771037182, 0.0593607305936073, 0.06262230919765166, 0.06979778212654925, 0.07045009784735812, 0.07436399217221135, 0.07827788649706457, 0.0821917808219178, 0.08349641226353555, 0.08741030658838878, 0.09197651663405088, 0.09654272667971298, 0.10437051532941943, 0.11350293542074363, 0.13633398564905413, 0.17221135029354206, 0.2126549249836921, 0.28636660143509457, 0.6542726679712981], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/EF-hand_4.gap.json b/pfam_gap_rates/EF-hand_4.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d81a65dbb6a2320839439c5b9887dff02c875cd3
--- /dev/null
+++ b/pfam_gap_rates/EF-hand_4.gap.json
@@ -0,0 +1 @@
+{"family": "EF-hand_4", "n_seqs": 1791, "length": 106, "gap_rates": [0.9212730318257957, 0.8900055834729201, 0.8151870463428252, 0.7448352875488554, 0.620323841429369, 0.5175879396984925, 0.40703517587939697, 0.35343383584589616, 0.28364042434394193, 0.23115577889447236, 0.1903964265773311, 0.17699609156895588, 0.15912897822445563, 0.14014517029592408, 0.12674483528754885, 0.11892797319932999, 0.11334450027917364, 0.10831937465103295, 0.09715242881072027, 0.9061976549413735, 0.08598548297040759, 0.9095477386934674, 0.08207705192629816, 0.9073143495254048, 0.06756002233389168, 0.9290898939140145, 0.056393076493579004, 0.0480178671133445, 0.04243439419318816, 0.038525963149078725, 0.03126744835287549, 0.026242322724734785, 0.02233389168062535, 0.018983807928531545, 0.018425460636515914, 0.01619207146845338, 0.01340033500837521, 0.012283640424343942, 0.011725293132328308, 0.008375209380234505, 0.0072585147962032385, 0.007816862088218872, 0.007816862088218872, 0.006700167504187605, 0.008375209380234505, 0.006141820212171971, 0.006141820212171971, 0.003908431044109436, 0.00446677833612507, 0.0027917364600781687, 0.0027917364600781687, 0.0027917364600781687, 0.002233389168062535, 0.0016750418760469012, 0.002233389168062535, 0.002233389168062535, 0.002233389168062535, 0.003908431044109436, 0.0033500837520938024, 0.002233389168062535, 0.002233389168062535, 0.0027917364600781687, 0.0027917364600781687, 0.003908431044109436, 0.005583472920156337, 0.006141820212171971, 0.006700167504187605, 0.006700167504187605, 0.0072585147962032385, 0.007816862088218872, 0.009491903964265773, 0.011725293132328308, 0.01340033500837521, 0.018983807928531545, 0.029034059184812954, 0.19765494137353434, 0.2657733109994416, 0.304857621440536, 0.27247347850362924, 0.27079843662758235, 0.2529313232830821, 0.3595756560580681, 0.4952540480178671, 0.40591848129536573, 0.248464544946957, 0.23562255723059744, 0.23394751535455052, 0.2367392518146287, 0.23729759910664433, 0.23785594639865998, 0.2434394193188163, 0.2696817420435511, 0.29704075935231716, 0.31714126186487995, 0.3969849246231156, 0.44109436069235064, 0.4991624790619765, 0.5661641541038526, 0.6292573981016192, 0.689000558347292, 0.7777777777777778, 0.8431044109436069, 0.9078726968174204, 0.9240647682858738, 0.9363484087102177, 0.9463986599664992], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/EF-hand_5.gap.json b/pfam_gap_rates/EF-hand_5.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..7d9e67c34a7c304e046ec3cacf8f6022a6330820
--- /dev/null
+++ b/pfam_gap_rates/EF-hand_5.gap.json
@@ -0,0 +1 @@
+{"family": "EF-hand_5", "n_seqs": 5000, "length": 25, "gap_rates": [0.8834, 0.7466, 0.56, 0.3678, 0.2048, 0.161, 0.101, 0.0442, 0.0026, 0.0018, 0.0008, 0.0002, 0.0002, 0.0, 0.0014, 0.0022, 0.011, 0.0234, 0.046, 0.0616, 0.1624, 0.3344, 0.5132, 0.749, 0.9298], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/EF-hand_like.gap.json b/pfam_gap_rates/EF-hand_like.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..8872c8cc1dcd506188e7678a7b97a68a378febd5
--- /dev/null
+++ b/pfam_gap_rates/EF-hand_like.gap.json
@@ -0,0 +1 @@
+{"family": "EF-hand_like", "n_seqs": 517, "length": 105, "gap_rates": [0.632495164410058, 0.47775628626692457, 0.42166344294003866, 0.3713733075435203, 0.3152804642166344, 0.30947775628626695, 0.30174081237911027, 0.2862669245647969, 0.21663442940038685, 0.16054158607350097, 0.15667311411992263, 0.15667311411992263, 0.1528046421663443, 0.15087040618955513, 0.14893617021276595, 0.14893617021276595, 0.14313346228239845, 0.14313346228239845, 0.9226305609284333, 0.12959381044487428, 0.1102514506769826, 0.9361702127659575, 0.11605415860735009, 0.14313346228239845, 0.9477756286266924, 0.0735009671179884, 0.06382978723404255, 0.05609284332688588, 0.05222437137330754, 0.03868471953578337, 0.027079303675048357, 0.027079303675048357, 0.027079303675048357, 0.027079303675048357, 0.027079303675048357, 0.027079303675048357, 0.025145067698259187, 0.025145067698259187, 0.025145067698259187, 0.027079303675048357, 0.025145067698259187, 0.025145067698259187, 0.027079303675048357, 0.027079303675048357, 0.21470019342359767, 0.8104448742746615, 0.8104448742746615, 0.8123791102514507, 0.8143133462282398, 0.8123791102514507, 0.8123791102514507, 0.8104448742746615, 0.8104448742746615, 0.03868471953578337, 0.9052224371373307, 0.9052224371373307, 0.9052224371373307, 0.90715667311412, 0.90715667311412, 0.9052224371373307, 0.9052224371373307, 0.9052224371373307, 0.029013539651837523, 0.017408123791102514, 0.013539651837524178, 0.019342359767891684, 0.01160541586073501, 0.009671179883945842, 0.01160541586073501, 0.013539651837524178, 0.013539651837524178, 0.013539651837524178, 0.019342359767891684, 0.03481624758220503, 0.048355899419729204, 0.05609284332688588, 0.05415860735009671, 0.058027079303675046, 0.06382978723404255, 0.061895551257253385, 0.05415860735009671, 0.058027079303675046, 0.05415860735009671, 0.05029013539651837, 0.04642166344294004, 0.04642166344294004, 0.048355899419729204, 0.048355899419729204, 0.048355899419729204, 0.048355899419729204, 0.05029013539651837, 0.05029013539651837, 0.05609284332688588, 0.059961315280464215, 0.059961315280464215, 0.07156673114119923, 0.09284332688588008, 0.11218568665377177, 0.14313346228239845, 0.2379110251450677, 0.3829787234042553, 0.3945841392649903, 0.44294003868471954, 0.5764023210831721, 0.7369439071566731], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/EF1_GNE.gap.json b/pfam_gap_rates/EF1_GNE.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..21d1f806636deba68904a018e1a8d37146f252c0
--- /dev/null
+++ b/pfam_gap_rates/EF1_GNE.gap.json
@@ -0,0 +1 @@
+{"family": "EF1_GNE", "n_seqs": 587, "length": 92, "gap_rates": [0.6013628620102215, 0.07666098807495741, 0.028960817717206135, 0.02555366269165247, 0.022146507666098807, 0.022146507666098807, 0.020442930153321975, 0.020442930153321975, 0.020442930153321975, 0.020442930153321975, 0.020442930153321975, 0.017035775127768313, 0.015332197614991482, 0.017035775127768313, 0.008517887563884156, 0.0068143100511073255, 0.008517887563884156, 0.008517887563884156, 0.008517887563884156, 0.008517887563884156, 0.0068143100511073255, 0.0068143100511073255, 0.0068143100511073255, 0.0068143100511073255, 0.11073253833049404, 0.017035775127768313, 0.008517887563884156, 0.008517887563884156, 0.005110732538330494, 0.9114139693356048, 0.008517887563884156, 0.018739352640545145, 0.015332197614991482, 0.0068143100511073255, 0.6354344122657581, 0.2776831345826235, 0.015332197614991482, 0.013628620102214651, 0.01192504258943782, 0.013628620102214651, 0.013628620102214651, 0.013628620102214651, 0.013628620102214651, 0.013628620102214651, 0.015332197614991482, 0.017035775127768313, 0.017035775127768313, 0.018739352640545145, 0.017035775127768313, 0.017035775127768313, 0.017035775127768313, 0.018739352640545145, 0.020442930153321975, 0.020442930153321975, 0.020442930153321975, 0.022146507666098807, 0.028960817717206135, 0.02385008517887564, 0.03577512776831346, 0.028960817717206135, 0.027257240204429302, 0.027257240204429302, 0.028960817717206135, 0.028960817717206135, 0.028960817717206135, 0.028960817717206135, 0.028960817717206135, 0.030664395229982964, 0.034071550255536626, 0.04088586030664395, 0.7052810902896082, 0.7001703577512777, 0.676320272572402, 0.6712095400340715, 0.28960817717206133, 0.909710391822828, 0.18568994889267462, 0.1839863713798978, 0.1839863713798978, 0.1839863713798978, 0.04258943781942078, 0.04770017035775128, 0.05110732538330494, 0.054514480408858604, 0.054514480408858604, 0.056218057921635436, 0.06814310051107325, 0.07495741056218058, 0.08006814310051108, 0.10051107325383304, 0.14480408858603067, 0.19250425894378195], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/EGF_3.gap.json b/pfam_gap_rates/EGF_3.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..287adf6970be8f1aac1ac7a3f3a92b84ddcf9716
--- /dev/null
+++ b/pfam_gap_rates/EGF_3.gap.json
@@ -0,0 +1 @@
+{"family": "EGF_3", "n_seqs": 1728, "length": 38, "gap_rates": [0.2864583333333333, 0.27372685185185186, 0.2569444444444444, 0.2222222222222222, 0.1597222222222222, 0.11400462962962964, 0.02488425925925926, 0.001736111111111111, 0.0005787037037037037, 0.0005787037037037037, 0.0005787037037037037, 0.0005787037037037037, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0005787037037037037, 0.9351851851851852, 0.8182870370370371, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0005787037037037037, 0.0005787037037037037, 0.008680555555555556, 0.012152777777777778, 0.013310185185185185, 0.017939814814814815, 0.024305555555555556, 0.07407407407407407, 0.09490740740740741], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/EI24.gap.json b/pfam_gap_rates/EI24.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..8f5a6626c8dd6efd78c1ea5425a942d590cf5bad
--- /dev/null
+++ b/pfam_gap_rates/EI24.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/EIIC-GAT.gap.json b/pfam_gap_rates/EIIC-GAT.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..1026163d13c8a4a417cb7cb5730fddeb013f465d
--- /dev/null
+++ b/pfam_gap_rates/EIIC-GAT.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/EIN3.gap.json b/pfam_gap_rates/EIN3.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..eca33855f6bfb728a92724c9803eea77a95143e1
--- /dev/null
+++ b/pfam_gap_rates/EIN3.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/ELL.gap.json b/pfam_gap_rates/ELL.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ecb1fc567cc1b0625daa2f027a77d73bb053d399
--- /dev/null
+++ b/pfam_gap_rates/ELL.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/ENOD93.gap.json b/pfam_gap_rates/ENOD93.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..30e380ba13f3e88760f78bf16cb1f21ae519315d
--- /dev/null
+++ b/pfam_gap_rates/ENOD93.gap.json
@@ -0,0 +1 @@
+{"family": "ENOD93", "n_seqs": 101, "length": 78, "gap_rates": [0.40594059405940597, 0.37623762376237624, 0.33663366336633666, 0.18811881188118812, 0.18811881188118812, 0.15841584158415842, 0.1485148514851485, 0.1485148514851485, 0.12871287128712872, 0.10891089108910891, 0.10891089108910891, 0.07920792079207921, 0.07920792079207921, 0.04950495049504951, 0.04950495049504951, 0.039603960396039604, 0.0297029702970297, 0.0297029702970297, 0.0297029702970297, 0.0297029702970297, 0.0297029702970297, 0.0297029702970297, 0.019801980198019802, 0.019801980198019802, 0.0297029702970297, 0.0297029702970297, 0.019801980198019802, 0.019801980198019802, 0.019801980198019802, 0.019801980198019802, 0.019801980198019802, 0.009900990099009901, 0.009900990099009901, 0.019801980198019802, 0.0297029702970297, 0.019801980198019802, 0.0297029702970297, 0.0297029702970297, 0.0297029702970297, 0.0297029702970297, 0.0297029702970297, 0.0297029702970297, 0.0297029702970297, 0.0297029702970297, 0.0297029702970297, 0.0297029702970297, 0.0297029702970297, 0.0297029702970297, 0.0297029702970297, 0.0297029702970297, 0.0297029702970297, 0.0297029702970297, 0.0297029702970297, 0.0297029702970297, 0.0297029702970297, 0.0297029702970297, 0.04950495049504951, 0.0594059405940594, 0.0594059405940594, 0.06930693069306931, 0.06930693069306931, 0.06930693069306931, 0.06930693069306931, 0.07920792079207921, 0.07920792079207921, 0.07920792079207921, 0.0891089108910891, 0.0891089108910891, 0.0891089108910891, 0.0891089108910891, 0.0891089108910891, 0.0891089108910891, 0.09900990099009901, 0.09900990099009901, 0.09900990099009901, 0.12871287128712872, 0.1485148514851485, 0.21782178217821782], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/EPTP.gap.json b/pfam_gap_rates/EPTP.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..30f8b73ced4e83a1fb91806e00d27dcb7ed08f72
--- /dev/null
+++ b/pfam_gap_rates/EPTP.gap.json
@@ -0,0 +1 @@
+{"family": "EPTP", "n_seqs": 630, "length": 57, "gap_rates": [0.3888888888888889, 0.11746031746031746, 0.08412698412698413, 0.06190476190476191, 0.04126984126984127, 0.03650793650793651, 0.023809523809523808, 0.020634920634920634, 0.020634920634920634, 0.01904761904761905, 0.014285714285714285, 0.9095238095238095, 0.9126984126984127, 0.7095238095238096, 0.1, 0.0031746031746031746, 0.0031746031746031746, 0.0015873015873015873, 0.0015873015873015873, 0.0015873015873015873, 0.0015873015873015873, 0.0015873015873015873, 0.0015873015873015873, 0.0031746031746031746, 0.0031746031746031746, 0.0031746031746031746, 0.0015873015873015873, 0.0015873015873015873, 0.0031746031746031746, 0.0031746031746031746, 0.004761904761904762, 0.004761904761904762, 0.9047619047619048, 0.004761904761904762, 0.004761904761904762, 0.004761904761904762, 0.7111111111111111, 0.719047619047619, 0.9301587301587302, 0.9412698412698413, 0.9476190476190476, 0.9380952380952381, 0.8809523809523809, 0.7142857142857143, 0.6984126984126984, 0.5857142857142857, 0.45555555555555555, 0.1111111111111111, 0.01904761904761905, 0.022222222222222223, 0.022222222222222223, 0.022222222222222223, 0.026984126984126985, 0.03650793650793651, 0.05396825396825397, 0.13968253968253969, 0.27936507936507937], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/ERM.gap.json b/pfam_gap_rates/ERM.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..8744965f69c8ba632cca95627d7324edd2c04649
--- /dev/null
+++ b/pfam_gap_rates/ERM.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/ERp29.gap.json b/pfam_gap_rates/ERp29.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..1f0036d82392cbee8f001721ae629d0bfb6138fb
--- /dev/null
+++ b/pfam_gap_rates/ERp29.gap.json
@@ -0,0 +1 @@
+{"family": "ERp29", "n_seqs": 293, "length": 99, "gap_rates": [0.17747440273037543, 0.12286689419795221, 0.11262798634812286, 0.10580204778156997, 0.10238907849829351, 0.09897610921501707, 0.09556313993174062, 0.09556313993174062, 0.09556313993174062, 0.09215017064846416, 0.09215017064846416, 0.08873720136518772, 0.08873720136518772, 0.08873720136518772, 0.08873720136518772, 0.08873720136518772, 0.09215017064846416, 0.8191126279863481, 0.4300341296928328, 0.3412969283276451, 0.15699658703071673, 0.12286689419795221, 0.07849829351535836, 0.06825938566552901, 0.06484641638225255, 0.06484641638225255, 0.05802047781569966, 0.05802047781569966, 0.05802047781569966, 0.051194539249146756, 0.05460750853242321, 0.05802047781569966, 0.05802047781569966, 0.06143344709897611, 0.06484641638225255, 0.06484641638225255, 0.06143344709897611, 0.9385665529010239, 0.7064846416382252, 0.33447098976109213, 0.32764505119453924, 0.27986348122866894, 0.12286689419795221, 0.06484641638225255, 0.040955631399317405, 0.03754266211604096, 0.034129692832764506, 0.023890784982935155, 0.023890784982935155, 0.023890784982935155, 0.023890784982935155, 0.017064846416382253, 0.017064846416382253, 0.010238907849829351, 0.010238907849829351, 0.006825938566552901, 0.006825938566552901, 0.0, 0.0, 0.0, 0.3003412969283277, 0.006825938566552901, 0.006825938566552901, 0.006825938566552901, 0.006825938566552901, 0.006825938566552901, 0.006825938566552901, 0.006825938566552901, 0.006825938566552901, 0.006825938566552901, 0.010238907849829351, 0.010238907849829351, 0.010238907849829351, 0.010238907849829351, 0.010238907849829351, 0.3310580204778157, 0.931740614334471, 0.013651877133105802, 0.023890784982935155, 0.030716723549488054, 0.030716723549488054, 0.034129692832764506, 0.030716723549488054, 0.030716723549488054, 0.030716723549488054, 0.034129692832764506, 0.034129692832764506, 0.034129692832764506, 0.03754266211604096, 0.040955631399317405, 0.04436860068259386, 0.04436860068259386, 0.04778156996587031, 0.051194539249146756, 0.051194539249146756, 0.051194539249146756, 0.05460750853242321, 0.07849829351535836, 0.13651877133105803], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/EXOSC1.gap.json b/pfam_gap_rates/EXOSC1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..4bbdf742b6935b4af147ebd490b1fd1629d936d8
--- /dev/null
+++ b/pfam_gap_rates/EXOSC1.gap.json
@@ -0,0 +1 @@
+{"family": "EXOSC1", "n_seqs": 321, "length": 117, "gap_rates": [0.8193146417445483, 0.8006230529595015, 0.7881619937694704, 0.778816199376947, 0.778816199376947, 0.778816199376947, 0.778816199376947, 0.778816199376947, 0.778816199376947, 0.778816199376947, 0.778816199376947, 0.778816199376947, 0.778816199376947, 0.778816199376947, 0.778816199376947, 0.778816199376947, 0.778816199376947, 0.778816199376947, 0.778816199376947, 0.7757009345794392, 0.7725856697819314, 0.7725856697819314, 0.7694704049844237, 0.7694704049844237, 0.7694704049844237, 0.7694704049844237, 0.7694704049844237, 0.7850467289719626, 0.8006230529595015, 0.8535825545171339, 0.9096573208722741, 0.897196261682243, 0.9003115264797508, 0.8909657320872274, 0.8878504672897196, 0.8878504672897196, 0.8847352024922118, 0.8847352024922118, 0.8785046728971962, 0.8785046728971962, 0.8753894080996885, 0.8660436137071651, 0.8691588785046729, 0.8660436137071651, 0.8660436137071651, 0.8660436137071651, 0.8691588785046729, 0.8691588785046729, 0.8691588785046729, 0.9003115264797508, 0.9376947040498442, 0.9127725856697819, 0.897196261682243, 0.8847352024922118, 0.8785046728971962, 0.881619937694704, 0.8785046728971962, 0.8847352024922118, 0.8847352024922118, 0.9065420560747663, 0.9096573208722741, 0.897196261682243, 0.9034267912772586, 0.897196261682243, 0.9003115264797508, 0.897196261682243, 0.897196261682243, 0.9439252336448598, 0.9470404984423676, 0.9439252336448598, 0.9376947040498442, 0.8722741433021807, 0.8566978193146417, 0.8006230529595015, 0.7632398753894081, 0.6822429906542056, 0.4485981308411215, 0.29595015576323985, 0.205607476635514, 0.1557632398753894, 0.13395638629283488, 0.1308411214953271, 0.1308411214953271, 0.1308411214953271, 0.1308411214953271, 0.12461059190031153, 0.12461059190031153, 0.12149532710280374, 0.12149532710280374, 0.11838006230529595, 0.11838006230529595, 0.11838006230529595, 0.11838006230529595, 0.11838006230529595, 0.12149532710280374, 0.11838006230529595, 0.11838006230529595, 0.11838006230529595, 0.11838006230529595, 0.12461059190031153, 0.12461059190031153, 0.12461059190031153, 0.12461059190031153, 0.12461059190031153, 0.12461059190031153, 0.12461059190031153, 0.1277258566978193, 0.1277258566978193, 0.1277258566978193, 0.1277258566978193, 0.1308411214953271, 0.1308411214953271, 0.1308411214953271, 0.13395638629283488, 0.14018691588785046, 0.2523364485981308, 0.308411214953271], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Ecl1.gap.json b/pfam_gap_rates/Ecl1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..020738baae39ea750575bf828f77fc4d76c39de4
--- /dev/null
+++ b/pfam_gap_rates/Ecl1.gap.json
@@ -0,0 +1 @@
+{"family": "Ecl1", "n_seqs": 135, "length": 43, "gap_rates": [0.6888888888888889, 0.6814814814814815, 0.6444444444444445, 0.4888888888888889, 0.48148148148148145, 0.2, 0.11851851851851852, 0.014814814814814815, 0.007407407407407408, 0.007407407407407408, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.562962962962963, 0.4222222222222222, 0.9259259259259259, 0.3111111111111111, 0.1111111111111111, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.022222222222222223, 0.022222222222222223, 0.022222222222222223, 0.022222222222222223, 0.022222222222222223, 0.022222222222222223, 0.1111111111111111, 0.17777777777777778, 0.23703703703703705, 0.4, 0.6074074074074074, 0.7481481481481481, 0.9333333333333333], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/EmrE.gap.json b/pfam_gap_rates/EmrE.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..86443cb5dcc09be660490f9014121588a9f7e0ed
--- /dev/null
+++ b/pfam_gap_rates/EmrE.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Endonuclease_1.gap.json b/pfam_gap_rates/Endonuclease_1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..5ee6b7d11820723e50bfa4532d440d9c66432f6e
--- /dev/null
+++ b/pfam_gap_rates/Endonuclease_1.gap.json
@@ -0,0 +1 @@
+{"family": "Endonuclease_1", "n_seqs": 474, "length": 291, "gap_rates": [0.8164556962025317, 0.6497890295358649, 0.609704641350211, 0.5464135021097046, 0.5274261603375527, 0.5147679324894515, 0.5168776371308017, 0.5063291139240507, 0.4978902953586498, 0.4873417721518987, 0.49156118143459915, 0.47257383966244726, 0.4704641350210971, 0.4704641350210971, 0.45358649789029537, 0.44936708860759494, 0.8966244725738397, 0.7848101265822784, 0.4472573839662447, 0.4388185654008439, 0.42616033755274263, 0.4219409282700422, 0.41561181434599154, 0.41139240506329117, 0.8839662447257384, 0.3924050632911392, 0.3924050632911392, 0.3860759493670886, 0.37763713080168776, 0.3755274261603376, 0.37341772151898733, 0.3755274261603376, 0.379746835443038, 0.3755274261603376, 0.379746835443038, 0.3691983122362869, 0.35864978902953587, 0.9493670886075949, 0.8122362869198312, 0.7552742616033755, 0.4240506329113924, 0.39662447257383965, 0.3291139240506329, 0.31856540084388185, 0.31645569620253167, 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\ No newline at end of file
diff --git a/pfam_gap_rates/Endonuclease_7.gap.json b/pfam_gap_rates/Endonuclease_7.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..3d8bb171481e3952b44917e8e4c99e669269ac51
--- /dev/null
+++ b/pfam_gap_rates/Endonuclease_7.gap.json
@@ -0,0 +1 @@
+{"family": "Endonuclease_7", "n_seqs": 101, "length": 97, "gap_rates": [0.8910891089108911, 0.8316831683168316, 0.7722772277227723, 0.7326732673267327, 0.7128712871287128, 0.7128712871287128, 0.6831683168316832, 0.6633663366336634, 0.6237623762376238, 0.594059405940594, 0.5445544554455446, 0.5148514851485149, 0.48514851485148514, 0.48514851485148514, 0.46534653465346537, 0.4752475247524752, 0.4158415841584158, 0.38613861386138615, 0.31683168316831684, 0.22772277227722773, 0.13861386138613863, 0.10891089108910891, 0.0891089108910891, 0.019801980198019802, 0.019801980198019802, 0.019801980198019802, 0.019801980198019802, 0.019801980198019802, 0.019801980198019802, 0.0594059405940594, 0.5742574257425742, 0.36633663366336633, 0.31683168316831684, 0.2871287128712871, 0.25742574257425743, 0.9306930693069307, 0.7821782178217822, 0.07920792079207921, 0.009900990099009901, 0.009900990099009901, 0.009900990099009901, 0.009900990099009901, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.009900990099009901, 0.009900990099009901, 0.0, 0.900990099009901, 0.900990099009901, 0.9207920792079208, 0.9207920792079208, 0.9207920792079208, 0.9108910891089109, 0.900990099009901, 0.900990099009901, 0.0, 0.0, 0.0, 0.0, 0.0, 0.009900990099009901, 0.009900990099009901, 0.009900990099009901, 0.009900990099009901, 0.009900990099009901, 0.009900990099009901, 0.07920792079207921, 0.22772277227722773, 0.31683168316831684, 0.33663366336633666, 0.3564356435643564, 0.9306930693069307, 0.9306930693069307, 0.9405940594059405, 0.9405940594059405, 0.9306930693069307, 0.9306930693069307, 0.45544554455445546, 0.46534653465346537, 0.4752475247524752, 0.48514851485148514, 0.48514851485148514, 0.504950495049505, 0.5148514851485149, 0.5247524752475248, 0.5247524752475248, 0.5247524752475248, 0.5445544554455446, 0.5445544554455446, 0.5445544554455446, 0.5643564356435643, 0.6336633663366337, 0.9207920792079208], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Endostatin.gap.json b/pfam_gap_rates/Endostatin.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..1b74af67e3f4ef4edf805fa74267bd6913e0d05e
--- /dev/null
+++ b/pfam_gap_rates/Endostatin.gap.json
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\ No newline at end of file
diff --git a/pfam_gap_rates/Eno-Rase_FAD_bd.gap.json b/pfam_gap_rates/Eno-Rase_FAD_bd.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f215c92d2ceacdb2549bbf3bc300a3e2268436ab
--- /dev/null
+++ b/pfam_gap_rates/Eno-Rase_FAD_bd.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Enoyl_reductase.gap.json b/pfam_gap_rates/Enoyl_reductase.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f751b9f86835fe8e80089d605085fe51f02a0d16
--- /dev/null
+++ b/pfam_gap_rates/Enoyl_reductase.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Ephrin_rec_like.gap.json b/pfam_gap_rates/Ephrin_rec_like.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..505b6c38840feb4049daec209fc2bc46e9d362b0
--- /dev/null
+++ b/pfam_gap_rates/Ephrin_rec_like.gap.json
@@ -0,0 +1 @@
+{"family": "Ephrin_rec_like", "n_seqs": 2034, "length": 51, "gap_rates": [0.38839724680432647, 0.3662733529990167, 0.34119960668633237, 0.31809242871189775, 0.28466076696165193, 0.8638151425762045, 0.2335299901671583, 0.1912487708947886, 0.19075712881022616, 0.10275319567354965, 0.03343166175024582, 0.014257620452310717, 0.010816125860373648, 0.0029498525073746312, 0.0, 0.0, 0.0004916420845624386, 0.0, 0.0, 0.0, 0.0, 0.00344149459193707, 0.9375614552605703, 0.9169124877089478, 0.00344149459193707, 0.0004916420845624386, 0.004424778761061947, 0.0029498525073746312, 0.0, 0.0009832841691248771, 0.0, 0.0, 0.0014749262536873156, 0.0014749262536873156, 0.007374631268436578, 0.009341199606686333, 0.014749262536873156, 0.028023598820058997, 0.0471976401179941, 0.06637168141592921, 0.0727630285152409, 0.0880039331366765, 0.09734513274336283, 0.10766961651917405, 0.14060963618485742, 0.168141592920354, 0.21779744346116028, 0.26450344149459193, 0.27335299901671584, 0.2782694198623402, 0.2831858407079646], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Erg28.gap.json b/pfam_gap_rates/Erg28.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..80f4ffede01662e9fd0ac66d6a4d3c003ff17513
--- /dev/null
+++ b/pfam_gap_rates/Erg28.gap.json
@@ -0,0 +1 @@
+{"family": "Erg28", "n_seqs": 234, "length": 144, "gap_rates": [0.5128205128205128, 0.2264957264957265, 0.07692307692307693, 0.07264957264957266, 0.06837606837606838, 0.0641025641025641, 0.0641025641025641, 0.05982905982905983, 0.05128205128205128, 0.04700854700854701, 0.042735042735042736, 0.04700854700854701, 0.04700854700854701, 0.04700854700854701, 0.04700854700854701, 0.04700854700854701, 0.04700854700854701, 0.04700854700854701, 0.04700854700854701, 0.042735042735042736, 0.042735042735042736, 0.042735042735042736, 0.042735042735042736, 0.5811965811965812, 0.07264957264957266, 0.06837606837606838, 0.0641025641025641, 0.0641025641025641, 0.038461538461538464, 0.038461538461538464, 0.038461538461538464, 0.038461538461538464, 0.038461538461538464, 0.038461538461538464, 0.038461538461538464, 0.05128205128205128, 0.08974358974358974, 0.5897435897435898, 0.7307692307692307, 0.7606837606837606, 0.7905982905982906, 0.8034188034188035, 0.8162393162393162, 0.8290598290598291, 0.8376068376068376, 0.8504273504273504, 0.8760683760683761, 0.8760683760683761, 0.8803418803418803, 0.8803418803418803, 0.8803418803418803, 0.8803418803418803, 0.8846153846153846, 0.9316239316239316, 0.9401709401709402, 0.8846153846153846, 0.8846153846153846, 0.8803418803418803, 0.8803418803418803, 0.8803418803418803, 0.8803418803418803, 0.8760683760683761, 0.8675213675213675, 0.8418803418803419, 0.8333333333333334, 0.8205128205128205, 0.8076923076923077, 0.7905982905982906, 0.7905982905982906, 0.7307692307692307, 0.7051282051282052, 0.21367521367521367, 0.1452991452991453, 0.021367521367521368, 0.01282051282051282, 0.008547008547008548, 0.004273504273504274, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.004273504273504274, 0.004273504273504274, 0.008547008547008548, 0.008547008547008548, 0.008547008547008548, 0.004273504273504274, 0.004273504273504274, 0.004273504273504274, 0.004273504273504274, 0.004273504273504274, 0.008547008547008548, 0.008547008547008548, 0.008547008547008548, 0.004273504273504274, 0.004273504273504274, 0.004273504273504274, 0.004273504273504274, 0.004273504273504274, 0.004273504273504274, 0.004273504273504274, 0.01282051282051282, 0.01282051282051282, 0.021367521367521368, 0.021367521367521368, 0.021367521367521368, 0.021367521367521368, 0.021367521367521368, 0.021367521367521368, 0.021367521367521368, 0.021367521367521368, 0.021367521367521368, 0.021367521367521368, 0.021367521367521368, 0.02564102564102564, 0.02564102564102564, 0.021367521367521368, 0.021367521367521368, 0.021367521367521368, 0.021367521367521368, 0.021367521367521368, 0.02564102564102564, 0.021367521367521368, 0.021367521367521368, 0.02564102564102564, 0.02564102564102564, 0.02564102564102564, 0.02564102564102564, 0.02564102564102564, 0.02564102564102564, 0.18376068376068377, 0.09829059829059829, 0.12393162393162394, 0.1282051282051282, 0.13675213675213677, 0.1581196581196581, 0.1623931623931624, 0.1794871794871795, 0.20085470085470086, 0.2264957264957265, 0.2948717948717949, 0.5598290598290598], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Evr1_Alr.gap.json b/pfam_gap_rates/Evr1_Alr.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..169b46530424d9f7aac0da03c646ef536f25b83e
--- /dev/null
+++ b/pfam_gap_rates/Evr1_Alr.gap.json
@@ -0,0 +1 @@
+{"family": "Evr1_Alr", "n_seqs": 752, "length": 122, "gap_rates": [0.23138297872340424, 0.11436170212765957, 0.057180851063829786, 0.05186170212765957, 0.05186170212765957, 0.04654255319148936, 0.04521276595744681, 0.0425531914893617, 0.0425531914893617, 0.03324468085106383, 0.03324468085106383, 0.031914893617021274, 0.031914893617021274, 0.027925531914893616, 0.027925531914893616, 0.9069148936170213, 0.02925531914893617, 0.1595744680851064, 0.14893617021276595, 0.13829787234042554, 0.11170212765957446, 0.12898936170212766, 0.05186170212765957, 0.9242021276595744, 0.9335106382978723, 0.9295212765957447, 0.910904255319149, 0.04521276595744681, 0.04521276595744681, 0.0425531914893617, 0.07047872340425532, 0.7287234042553191, 0.7074468085106383, 0.6662234042553191, 0.6316489361702128, 0.010638297872340425, 0.010638297872340425, 0.009308510638297872, 0.009308510638297872, 0.009308510638297872, 0.009308510638297872, 0.010638297872340425, 0.010638297872340425, 0.013297872340425532, 0.010638297872340425, 0.010638297872340425, 0.013297872340425532, 0.009308510638297872, 0.007978723404255319, 0.009308510638297872, 0.009308510638297872, 0.007978723404255319, 0.007978723404255319, 0.009308510638297872, 0.011968085106382979, 0.011968085106382979, 0.011968085106382979, 0.2712765957446808, 0.031914893617021274, 0.026595744680851064, 0.031914893617021274, 0.027925531914893616, 0.026595744680851064, 0.9055851063829787, 0.9188829787234043, 0.8311170212765957, 0.04521276595744681, 0.9242021276595744, 0.9295212765957447, 0.9335106382978723, 0.9388297872340425, 0.9428191489361702, 0.9454787234042553, 0.9428191489361702, 0.9375, 0.9321808510638298, 0.9242021276595744, 0.9242021276595744, 0.5691489361702128, 0.05585106382978723, 0.02925531914893617, 0.027925531914893616, 0.02526595744680851, 0.02127659574468085, 0.02127659574468085, 0.0199468085106383, 0.018617021276595744, 0.018617021276595744, 0.0199468085106383, 0.0199468085106383, 0.0199468085106383, 0.0199468085106383, 0.0199468085106383, 0.0199468085106383, 0.0199468085106383, 0.0199468085106383, 0.022606382978723406, 0.023936170212765957, 0.023936170212765957, 0.02526595744680851, 0.026595744680851064, 0.02925531914893617, 0.031914893617021274, 0.22074468085106383, 0.24335106382978725, 0.0797872340425532, 0.9375, 0.3178191489361702, 0.09840425531914894, 0.12101063829787234, 0.13031914893617022, 0.5957446808510638, 0.660904255319149, 0.7553191489361702, 0.2779255319148936, 0.3058510638297872, 0.7579787234042553, 0.31648936170212766, 0.33111702127659576, 0.3390957446808511, 0.3484042553191489, 0.523936170212766], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/FAD_binding_9.gap.json b/pfam_gap_rates/FAD_binding_9.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..2340caec825029223fd306daeb04424239327265
--- /dev/null
+++ b/pfam_gap_rates/FAD_binding_9.gap.json
@@ -0,0 +1 @@
+{"family": "FAD_binding_9", "n_seqs": 811, "length": 132, "gap_rates": [0.7361282367447596, 0.26633785450061653, 0.24784217016029594, 0.2379778051787916, 0.2281134401972873, 0.22318125770653513, 0.22318125770653513, 0.22318125770653513, 0.2219482120838471, 0.2219482120838471, 0.21948212083847102, 0.2120838471023428, 0.21085080147965474, 0.21085080147965474, 0.2096177558569667, 0.2096177558569667, 0.2096177558569667, 0.2096177558569667, 0.20838471023427868, 0.218249075215783, 0.21454993834771888, 0.20838471023427868, 0.20838471023427868, 0.2120838471023428, 0.20715166461159062, 0.20715166461159062, 0.9432799013563502, 0.87422934648582, 0.2688039457459926, 0.25030826140567203, 0.8692971639950678, 0.19852034525277434, 0.1935881627620222, 0.18865598027127004, 0.18618988902589395, 0.18495684340320592, 0.18372379778051787, 0.18495684340320592, 0.18495684340320592, 0.18372379778051787, 0.18495684340320592, 0.18495684340320592, 0.18988902589395806, 0.19482120838471023, 0.2059186189889026, 0.2157829839704069, 0.23304562268803947, 0.25154130702836003, 0.26140567200986436, 0.5265104808877928, 0.46115906288532676, 0.468557336621455, 0.3600493218249075, 0.3353884093711467, 0.3797780517879161, 0.32675709001233044, 0.29469790382244143, 0.2872996300863132, 0.2885326757090012, 0.4784217016029593, 0.46609124537607893, 0.5536374845869297, 0.46732429099876693, 0.5782983970406905, 0.531442663378545, 0.33045622688039455, 0.2441430332922318, 0.19728729963008632, 0.18002466091245375, 0.15906288532675708, 0.14303329223181258, 0.13070283600493218, 0.1060419235511714, 0.08877928483353884, 0.08631319358816276, 0.08631319358816276, 0.08508014796547472, 0.08508014796547472, 0.08631319358816276, 0.09124537607891492, 0.09001233045622688, 0.09247842170160296, 0.09864364981504316, 0.12083847102342787, 0.1405672009864365, 0.12700369913686807, 0.09617755856966707, 0.9025893958076449, 0.9346485819975339, 0.9001233045622689, 0.08754623921085081, 0.08384710234278668, 0.08384710234278668, 0.08384710234278668, 0.08508014796547472, 0.08631319358816276, 0.08631319358816276, 0.08631319358816276, 0.08754623921085081, 0.9408138101109741, 0.08631319358816276, 0.08754623921085081, 0.38964241676942046, 0.9013563501849569, 0.9223181257706535, 0.9445129469790382, 0.905055487053021, 0.8902589395807645, 0.11837237977805179, 0.08877928483353884, 0.08754623921085081, 0.08754623921085081, 0.08754623921085081, 0.08754623921085081, 0.08754623921085081, 0.08877928483353884, 0.09001233045622688, 0.09001233045622688, 0.09124537607891492, 0.09001233045622688, 0.09001233045622688, 0.09001233045622688, 0.09001233045622688, 0.09001233045622688, 0.09494451294697903, 0.12946979038224415, 0.15782983970406905, 0.20838471023427868, 0.2688039457459926, 0.2762022194821208, 0.3810110974106042, 0.6399506781750924], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/FANCL_C.gap.json b/pfam_gap_rates/FANCL_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..8ec45413b50205430e16699368a93abff69676b4
--- /dev/null
+++ b/pfam_gap_rates/FANCL_C.gap.json
@@ -0,0 +1 @@
+{"family": "FANCL_C", "n_seqs": 149, "length": 81, "gap_rates": [0.5167785234899329, 0.26174496644295303, 0.06040268456375839, 0.026845637583892617, 0.026845637583892617, 0.026845637583892617, 0.026845637583892617, 0.026845637583892617, 0.03355704697986577, 0.03355704697986577, 0.026845637583892617, 0.026845637583892617, 0.7919463087248322, 0.8053691275167785, 0.825503355704698, 0.8322147651006712, 0.9328859060402684, 0.9463087248322147, 0.9328859060402684, 0.9328859060402684, 0.8322147651006712, 0.8187919463087249, 0.8053691275167785, 0.6711409395973155, 0.40939597315436244, 0.040268456375838924, 0.020134228187919462, 0.03355704697986577, 0.026845637583892617, 0.006711409395973154, 0.006711409395973154, 0.006711409395973154, 0.013422818791946308, 0.020134228187919462, 0.06040268456375839, 0.18120805369127516, 0.15436241610738255, 0.03355704697986577, 0.006711409395973154, 0.013422818791946308, 0.013422818791946308, 0.006711409395973154, 0.006711409395973154, 0.006711409395973154, 0.006711409395973154, 0.006711409395973154, 0.006711409395973154, 0.006711409395973154, 0.013422818791946308, 0.013422818791946308, 0.026845637583892617, 0.026845637583892617, 0.03355704697986577, 0.03355704697986577, 0.040268456375838924, 0.053691275167785234, 0.04697986577181208, 0.06711409395973154, 0.14093959731543623, 0.15436241610738255, 0.15436241610738255, 0.1476510067114094, 0.1476510067114094, 0.1476510067114094, 0.15436241610738255, 0.1476510067114094, 0.1610738255033557, 0.15436241610738255, 0.15436241610738255, 0.15436241610738255, 0.15436241610738255, 0.15436241610738255, 0.15436241610738255, 0.19463087248322147, 0.2483221476510067, 0.26174496644295303, 0.3087248322147651, 0.42953020134228187, 0.4899328859060403, 0.6711409395973155, 0.8926174496644296], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/FBPase_glpX.gap.json b/pfam_gap_rates/FBPase_glpX.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d6df0ea5dc22aaca0253c619b22e88119023c285
--- /dev/null
+++ b/pfam_gap_rates/FBPase_glpX.gap.json
@@ -0,0 +1 @@
+{"family": "FBPase_glpX", "n_seqs": 829, "length": 336, "gap_rates": [0.4016887816646562, 0.17611580217129072, 0.08323281061519903, 0.06996381182147166, 0.05186972255729795, 0.04945717732207479, 0.04342581423401689, 0.04342581423401689, 0.04342581423401689, 0.04342581423401689, 0.04342581423401689, 0.04342581423401689, 0.04342581423401689, 0.04221954161640531, 0.04221954161640531, 0.038600723763570564, 0.038600723763570564, 0.038600723763570564, 0.03739445114595899, 0.03739445114595899, 0.03739445114595899, 0.03739445114595899, 0.03739445114595899, 0.03498190591073583, 0.03498190591073583, 0.03498190591073583, 0.03498190591073583, 0.03498190591073583, 0.03498190591073583, 0.033775633293124246, 0.033775633293124246, 0.033775633293124246, 0.033775633293124246, 0.033775633293124246, 0.033775633293124246, 0.033775633293124246, 0.033775633293124246, 0.032569360675512665, 0.032569360675512665, 0.032569360675512665, 0.033775633293124246, 0.033775633293124246, 0.033775633293124246, 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\ No newline at end of file
diff --git a/pfam_gap_rates/FERM_f0.gap.json b/pfam_gap_rates/FERM_f0.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..96a71500729c96bb494377193878b49929594717
--- /dev/null
+++ b/pfam_gap_rates/FERM_f0.gap.json
@@ -0,0 +1 @@
+{"family": "FERM_f0", "n_seqs": 201, "length": 87, "gap_rates": [0.4577114427860697, 0.3034825870646766, 0.22885572139303484, 0.21890547263681592, 0.21393034825870647, 0.21393034825870647, 0.21393034825870647, 0.30845771144278605, 0.2537313432835821, 0.14925373134328357, 0.13432835820895522, 0.12935323383084577, 0.1044776119402985, 0.06467661691542288, 0.05472636815920398, 0.05472636815920398, 0.04975124378109453, 0.03980099502487562, 0.03482587064676617, 0.03482587064676617, 0.03482587064676617, 0.029850746268656716, 0.029850746268656716, 0.029850746268656716, 0.029850746268656716, 0.029850746268656716, 0.029850746268656716, 0.029850746268656716, 0.029850746268656716, 0.029850746268656716, 0.029850746268656716, 0.029850746268656716, 0.029850746268656716, 0.03980099502487562, 0.04477611940298507, 0.04477611940298507, 0.03482587064676617, 0.03482587064676617, 0.07462686567164178, 0.9154228855721394, 0.5422885572139303, 0.18407960199004975, 0.13432835820895522, 0.06965174129353234, 0.024875621890547265, 0.024875621890547265, 0.024875621890547265, 0.024875621890547265, 0.024875621890547265, 0.024875621890547265, 0.024875621890547265, 0.024875621890547265, 0.01990049751243781, 0.06965174129353234, 0.05970149253731343, 0.05970149253731343, 0.05472636815920398, 0.029850746268656716, 0.9203980099502488, 0.029850746268656716, 0.029850746268656716, 0.029850746268656716, 0.029850746268656716, 0.029850746268656716, 0.029850746268656716, 0.029850746268656716, 0.029850746268656716, 0.029850746268656716, 0.03482587064676617, 0.03482587064676617, 0.03482587064676617, 0.03482587064676617, 0.03482587064676617, 0.04477611940298507, 0.04477611940298507, 0.07960199004975124, 0.0945273631840796, 0.11940298507462686, 0.8059701492537313, 0.8059701492537313, 0.7810945273631841, 0.11940298507462686, 0.12935323383084577, 0.22388059701492538, 0.23880597014925373, 0.25870646766169153, 0.44776119402985076], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/FG-GAP_2.gap.json b/pfam_gap_rates/FG-GAP_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..6693278d885dd49fed6cb52569b482309c169834
--- /dev/null
+++ b/pfam_gap_rates/FG-GAP_2.gap.json
@@ -0,0 +1 @@
+{"family": "FG-GAP_2", "n_seqs": 1583, "length": 71, "gap_rates": [0.3158559696778269, 0.2886923562855338, 0.2602653190145294, 0.21162349968414404, 0.18509159823120658, 0.16487681617182565, 0.14971572962728996, 0.14529374605180037, 0.12823752368919772, 0.12255211623499684, 0.11876184459886292, 0.10360075805432722, 0.06127605811749842, 0.04421983575489577, 0.028427037271004423, 0.029058749210360075, 0.017056222362602652, 0.012002526847757423, 0.0082122552116235, 0.008843967150979154, 0.006317119393556538, 0.00505369551484523, 0.0018951358180669614, 0.0018951358180669614, 0.003158559696778269, 0.003790271636133923, 0.007580543272267846, 0.9166140240050537, 0.903348073278585, 0.006317119393556538, 0.9216677195198989, 0.005685407454200884, 0.006317119393556538, 0.006317119393556538, 0.006317119393556538, 0.006948831332912192, 0.011370814908401769, 0.9393556538218573, 0.9463044851547694, 0.9481996209728364, 0.9481996209728364, 0.9418825015792799, 0.9380922299431459, 0.017687934301958308, 0.035375868603916616, 0.04611497157296273, 0.04042956411876184, 0.7612128869235628, 0.8572331017056223, 0.8888186986734049, 0.9071383449147189, 0.915982312065698, 0.9406190777005685, 0.9204042956411876, 0.9115603284902085, 0.901452937460518, 0.8717624763108023, 0.8161718256475048, 0.6854074542008844, 0.13202779532533165, 0.20151610865445357, 0.20025268477574226, 0.9090334807327859, 0.17561591914087177, 0.12760581174984206, 0.08464939987365762, 0.08780795957043588, 0.08717624763108023, 0.09349336702463676, 0.10928616550852811, 0.15919140871762477], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/FGGY_C.gap.json b/pfam_gap_rates/FGGY_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f9cc4472eeb0a2ad06fd79044565b3427c093449
--- /dev/null
+++ b/pfam_gap_rates/FGGY_C.gap.json
@@ -0,0 +1 @@
+{"family": "FGGY_C", "n_seqs": 5000, "length": 233, "gap_rates": [0.7066, 0.2762, 0.1786, 0.1346, 0.1174, 0.1132, 0.1104, 0.1096, 0.1092, 0.1088, 0.1072, 0.1072, 0.1066, 0.5992, 0.1066, 0.1096, 0.1066, 0.1048, 0.104, 0.1044, 0.8682, 0.9434, 0.9222, 0.8346, 0.2454, 0.114, 0.1044, 0.1002, 0.1008, 0.1, 0.0988, 0.097, 0.0978, 0.0978, 0.1004, 0.842, 0.9124, 0.6532, 0.4802, 0.4154, 0.3196, 0.2778, 0.248, 0.0644, 0.0612, 0.0582, 0.0562, 0.0544, 0.0538, 0.0522, 0.0508, 0.05, 0.0486, 0.048, 0.0476, 0.047, 0.0466, 0.0462, 0.1058, 0.101, 0.919, 0.0978, 0.08, 0.0782, 0.079, 0.08, 0.3062, 0.8998, 0.9282, 0.8572, 0.298, 0.1368, 0.6338, 0.607, 0.5818, 0.1834, 0.158, 0.1326, 0.1332, 0.1236, 0.1226, 0.1336, 0.788, 0.8648, 0.9236, 0.9392, 0.946, 0.9312, 0.8998, 0.813, 0.7646, 0.6408, 0.11, 0.0802, 0.0736, 0.0744, 0.65, 0.5734, 0.5052, 0.4792, 0.4378, 0.0552, 0.0518, 0.0492, 0.0496, 0.0528, 0.041, 0.9328, 0.9452, 0.9306, 0.0516, 0.0404, 0.0402, 0.0396, 0.0386, 0.0358, 0.0358, 0.0352, 0.0356, 0.9354, 0.0358, 0.036, 0.0382, 0.0404, 0.042, 0.0432, 0.0646, 0.0958, 0.0574, 0.0418, 0.0348, 0.034, 0.0318, 0.0302, 0.0484, 0.0354, 0.928, 0.9354, 0.9248, 0.0346, 0.0344, 0.0332, 0.031, 0.0294, 0.0276, 0.03, 0.0468, 0.9234, 0.9284, 0.8714, 0.0412, 0.0256, 0.0244, 0.0242, 0.0232, 0.0232, 0.0232, 0.0228, 0.0216, 0.0214, 0.0216, 0.0218, 0.021, 0.021, 0.0212, 0.0204, 0.02, 0.0198, 0.019, 0.0188, 0.018, 0.0178, 0.017, 0.0658, 0.0654, 0.0532, 0.946, 0.9366, 0.434, 0.0388, 0.027, 0.02, 0.0186, 0.0148, 0.0152, 0.0146, 0.015, 0.0148, 0.0154, 0.015, 0.0156, 0.0158, 0.0154, 0.9082, 0.0156, 0.0162, 0.016, 0.0162, 0.0162, 0.0154, 0.0156, 0.016, 0.016, 0.0156, 0.0158, 0.0168, 0.0168, 0.0174, 0.0186, 0.0196, 0.0278, 0.0878, 0.024, 0.0232, 0.0232, 0.0458, 0.8508, 0.0318, 0.0304, 0.0362, 0.031, 0.029, 0.03, 0.03, 0.0314, 0.0358, 0.0384, 0.0452, 0.0588, 0.0858, 0.1436, 0.3298, 0.916], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/FGGY_N.gap.json b/pfam_gap_rates/FGGY_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..910326d8cc79f1baa5d2eb92a6a5cebfd231f13e
--- /dev/null
+++ b/pfam_gap_rates/FGGY_N.gap.json
@@ -0,0 +1 @@
+{"family": "FGGY_N", "n_seqs": 5000, "length": 274, "gap_rates": [0.5056, 0.178, 0.114, 0.1026, 0.101, 0.1004, 0.0994, 0.099, 0.099, 0.0988, 0.0986, 0.0982, 0.098, 0.0978, 0.0976, 0.0954, 0.0948, 0.095, 0.8286, 0.095, 0.0948, 0.094, 0.0938, 0.0946, 0.093, 0.093, 0.0926, 0.0924, 0.0916, 0.0904, 0.0908, 0.0942, 0.101, 0.106, 0.1102, 0.11, 0.109, 0.1582, 0.1192, 0.9124, 0.948, 0.8768, 0.1034, 0.0968, 0.0954, 0.0998, 0.0858, 0.0828, 0.081, 0.0802, 0.0792, 0.079, 0.0782, 0.0778, 0.0782, 0.0784, 0.078, 0.0782, 0.0784, 0.078, 0.0782, 0.0798, 0.0786, 0.0814, 0.0824, 0.085, 0.0912, 0.8794, 0.9496, 0.8872, 0.8578, 0.3448, 0.3136, 0.23, 0.1664, 0.1166, 0.0858, 0.0788, 0.0744, 0.0704, 0.07, 0.0694, 0.0696, 0.0696, 0.0704, 0.086, 0.0838, 0.0716, 0.07, 0.0698, 0.0704, 0.0694, 0.0694, 0.072, 0.0704, 0.0702, 0.0712, 0.645, 0.0702, 0.07, 0.068, 0.0676, 0.067, 0.069, 0.0674, 0.0476, 0.0388, 0.038, 0.0384, 0.0394, 0.0416, 0.04, 0.0414, 0.0434, 0.0466, 0.0484, 0.0474, 0.0474, 0.047, 0.0494, 0.0538, 0.8952, 0.9486, 0.7894, 0.214, 0.1836, 0.1, 0.0902, 0.0862, 0.0862, 0.0726, 0.0732, 0.07, 0.062, 0.066, 0.0592, 0.0566, 0.0558, 0.0542, 0.0552, 0.0604, 0.0522, 0.0526, 0.0516, 0.0604, 0.068, 0.0696, 0.069, 0.0782, 0.0888, 0.0786, 0.0612, 0.0558, 0.0528, 0.053, 0.0528, 0.053, 0.0502, 0.0522, 0.0504, 0.0504, 0.0476, 0.0472, 0.671, 0.6782, 0.6752, 0.6664, 0.0444, 0.0422, 0.0414, 0.0408, 0.041, 0.0434, 0.0398, 0.0398, 0.04, 0.0394, 0.0396, 0.04, 0.04, 0.0402, 0.0406, 0.6124, 0.857, 0.8716, 0.8466, 0.5614, 0.0456, 0.0528, 0.0554, 0.0554, 0.0566, 0.0566, 0.0548, 0.053, 0.0538, 0.054, 0.0556, 0.0584, 0.0572, 0.0674, 0.0556, 0.0582, 0.0616, 0.0578, 0.0554, 0.0534, 0.0536, 0.0524, 0.0548, 0.0546, 0.0592, 0.0552, 0.0568, 0.0576, 0.0622, 0.0638, 0.065, 0.0646, 0.0642, 0.07, 0.07, 0.811, 0.8902, 0.9164, 0.95, 0.9326, 0.9006, 0.871, 0.7774, 0.0642, 0.0614, 0.0616, 0.0622, 0.0626, 0.0628, 0.0642, 0.0656, 0.067, 0.0688, 0.0704, 0.0724, 0.0772, 0.0806, 0.086, 0.0966, 0.1268, 0.1568, 0.1922, 0.2324, 0.2386, 0.224, 0.2082, 0.298, 0.3978, 0.3736, 0.2866, 0.1582, 0.118, 0.1208, 0.112, 0.1122, 0.112, 0.1112, 0.1106, 0.1112, 0.1124, 0.1198, 0.1294, 0.1394, 0.1622, 0.192, 0.2532, 0.3644], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/FKBP_C.gap.json b/pfam_gap_rates/FKBP_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e2f18d916fcf18712cf6e70f0aafd7e2630b59ac
--- /dev/null
+++ b/pfam_gap_rates/FKBP_C.gap.json
@@ -0,0 +1 @@
+{"family": "FKBP_C", "n_seqs": 5000, "length": 150, "gap_rates": [0.8494, 0.6042, 0.6012, 0.1836, 0.129, 0.0952, 0.073, 0.062, 0.0502, 0.045, 0.0416, 0.0394, 0.0384, 0.0372, 0.0352, 0.033, 0.0326, 0.031, 0.9488, 0.2432, 0.8086, 0.0306, 0.0288, 0.0274, 0.0258, 0.0256, 0.0244, 0.0248, 0.025, 0.4548, 0.3074, 0.9446, 0.9086, 0.0896, 0.0712, 0.0364, 0.018, 0.0174, 0.0174, 0.0158, 0.0152, 0.0148, 0.015, 0.1434, 0.1454, 0.0176, 0.0124, 0.0112, 0.0106, 0.0112, 0.0108, 0.0108, 0.0102, 0.0102, 0.01, 0.0096, 0.0102, 0.007, 0.0072, 0.0076, 0.0068, 0.007, 0.0072, 0.007, 0.0072, 0.0078, 0.013, 0.0254, 0.03, 0.0342, 0.0414, 0.0446, 0.0456, 0.0492, 0.0488, 0.0494, 0.906, 0.9064, 0.9076, 0.9094, 0.9108, 0.9148, 0.9172, 0.924, 0.9258, 0.9278, 0.9304, 0.9326, 0.9342, 0.937, 0.9412, 0.9442, 0.9472, 0.9486, 0.9478, 0.9454, 0.942, 0.9398, 0.9354, 0.9338, 0.932, 0.9284, 0.9264, 0.9254, 0.9194, 0.9164, 0.9124, 0.9102, 0.9088, 0.9064, 0.9062, 0.9056, 0.0544, 0.1284, 0.1328, 0.5242, 0.2212, 0.474, 0.4346, 0.9204, 0.9428, 0.9078, 0.3318, 0.3276, 0.3266, 0.2826, 0.9292, 0.9292, 0.9314, 0.9358, 0.9384, 0.94, 0.9492, 0.9448, 0.9394, 0.9358, 0.9314, 0.9298, 0.9292, 0.9264, 0.1468, 0.1504, 0.1552, 0.1626, 0.169, 0.1762, 0.1848, 0.2044, 0.2506, 0.5248], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/FLYWCH.gap.json b/pfam_gap_rates/FLYWCH.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..090d2219d0e87a0e48ed386c0184dca854044399
--- /dev/null
+++ b/pfam_gap_rates/FLYWCH.gap.json
@@ -0,0 +1 @@
+{"family": "FLYWCH", "n_seqs": 1033, "length": 69, "gap_rates": [0.6292352371732817, 0.4269119070667957, 0.32526621490803487, 0.23039690222652467, 0.19748305905130686, 0.1606969990319458, 0.1345595353339787, 0.11713455953533398, 0.10261374636979671, 0.08422071636011616, 0.08131655372700872, 0.0590513068731849, 0.049370764762826716, 0.041626331074540175, 0.03291384317521781, 0.03291384317521781, 0.028073572120038724, 0.023233301064859633, 0.02420135527589545, 0.02904162633107454, 0.028073572120038724, 0.03291384317521781, 0.03291384317521781, 0.03872216844143272, 0.7696030977734754, 0.5285575992255567, 0.02420135527589545, 0.017424975798644726, 0.00968054211035818, 0.005808325266214908, 0.001936108422071636, 0.00484027105517909, 0.00484027105517909, 0.000968054211035818, 0.011616650532429816, 0.015488867376573089, 0.012584704743465635, 0.13746369796708616, 0.12584704743465633, 0.9448209099709584, 0.9080348499515973, 0.3736689254598258, 0.11423039690222653, 0.01452081316553727, 0.01452081316553727, 0.01452081316553727, 0.016456921587608905, 0.018393030009680542, 0.023233301064859633, 0.02516940948693127, 0.028073572120038724, 0.9235237173281704, 0.8780251694094869, 0.6689254598257502, 0.4036786060019361, 0.0968054211035818, 0.08518877057115198, 0.09002904162633107, 0.0968054211035818, 0.1074540174249758, 0.13068731848983542, 0.1452081316553727, 0.17037754114230397, 0.9235237173281704, 0.20619554695062922, 0.2468538238141336, 0.1771539206195547, 0.21684414327202323, 0.22749273959341723], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/FLgD_tudor.gap.json b/pfam_gap_rates/FLgD_tudor.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..58212ae111dd4ac236de1edf770b5c149b68a0a7
--- /dev/null
+++ b/pfam_gap_rates/FLgD_tudor.gap.json
@@ -0,0 +1 @@
+{"family": "FLgD_tudor", "n_seqs": 345, "length": 149, "gap_rates": [0.5623188405797102, 0.28405797101449276, 0.1391304347826087, 0.08695652173913043, 0.05507246376811594, 0.02318840579710145, 0.014492753623188406, 0.011594202898550725, 0.005797101449275362, 0.005797101449275362, 0.005797101449275362, 0.005797101449275362, 0.005797101449275362, 0.005797101449275362, 0.005797101449275362, 0.005797101449275362, 0.002898550724637681, 0.04057971014492753, 0.05217391304347826, 0.05217391304347826, 0.05217391304347826, 0.05217391304347826, 0.05217391304347826, 0.05217391304347826, 0.05217391304347826, 0.05217391304347826, 0.05217391304347826, 0.05217391304347826, 0.05217391304347826, 0.05217391304347826, 0.05217391304347826, 0.05217391304347826, 0.05217391304347826, 0.05217391304347826, 0.05217391304347826, 0.05217391304347826, 0.05217391304347826, 0.05217391304347826, 0.05217391304347826, 0.05217391304347826, 0.05217391304347826, 0.05217391304347826, 0.05507246376811594, 0.05507246376811594, 0.05507246376811594, 0.05507246376811594, 0.05507246376811594, 0.05507246376811594, 0.05507246376811594, 0.05507246376811594, 0.05507246376811594, 0.05507246376811594, 0.08695652173913043, 0.15072463768115943, 0.20869565217391303, 0.4289855072463768, 0.8231884057971014, 0.8608695652173913, 0.8956521739130435, 0.9217391304347826, 0.9478260869565217, 0.9420289855072463, 0.9130434782608695, 0.8753623188405797, 0.8521739130434782, 0.6840579710144927, 0.27246376811594203, 0.1855072463768116, 0.09565217391304348, 0.06956521739130435, 0.05507246376811594, 0.05507246376811594, 0.05507246376811594, 0.05507246376811594, 0.05507246376811594, 0.05507246376811594, 0.05507246376811594, 0.05507246376811594, 0.05507246376811594, 0.05217391304347826, 0.05217391304347826, 0.05217391304347826, 0.05217391304347826, 0.05217391304347826, 0.05217391304347826, 0.05217391304347826, 0.05217391304347826, 0.05217391304347826, 0.05217391304347826, 0.05217391304347826, 0.05217391304347826, 0.05217391304347826, 0.05217391304347826, 0.05217391304347826, 0.05217391304347826, 0.05217391304347826, 0.05217391304347826, 0.05217391304347826, 0.05217391304347826, 0.05217391304347826, 0.05217391304347826, 0.05217391304347826, 0.05217391304347826, 0.0463768115942029, 0.034782608695652174, 0.002898550724637681, 0.020289855072463767, 0.011594202898550725, 0.005797101449275362, 0.005797101449275362, 0.9304347826086956, 0.005797101449275362, 0.002898550724637681, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.744927536231884, 0.5623188405797102, 0.0, 0.0, 0.0, 0.0, 0.0, 0.017391304347826087, 0.0, 0.002898550724637681, 0.002898550724637681, 0.002898550724637681, 0.8898550724637682, 0.19710144927536233, 0.002898550724637681, 0.005797101449275362, 0.11014492753623188, 0.017391304347826087, 0.020289855072463767, 0.020289855072463767, 0.02608695652173913, 0.03768115942028986, 0.06086956521739131, 0.4318840579710145], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/FMN_bind.gap.json b/pfam_gap_rates/FMN_bind.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..367ea1b6dd55c69fd5c4c550d5f03c974df5e494
--- /dev/null
+++ b/pfam_gap_rates/FMN_bind.gap.json
@@ -0,0 +1 @@
+{"family": "FMN_bind", "n_seqs": 2345, "length": 116, "gap_rates": [0.30831556503198293, 0.2720682302771855, 0.23624733475479745, 0.1697228144989339, 0.1257995735607676, 0.09509594882729211, 0.05373134328358209, 0.03070362473347548, 0.023454157782515993, 0.019616204690831557, 0.018763326226012792, 0.016631130063965886, 0.612366737739872, 0.050746268656716415, 0.23667377398720682, 0.1279317697228145, 0.2810234541577825, 0.8631130063965885, 0.1415778251599147, 0.011513859275053304, 0.011087420042643924, 0.011087420042643924, 0.011087420042643924, 0.011940298507462687, 0.011087420042643924, 0.05970149253731343, 0.060127931769722816, 0.0626865671641791, 0.05714285714285714, 0.91727078891258, 0.04776119402985075, 0.10063965884861407, 0.06993603411513859, 0.06524520255863539, 0.07121535181236674, 0.8230277185501066, 0.08486140724946695, 0.09893390191897655, 0.787633262260128, 0.011087420042643924, 0.026439232409381664, 0.05031982942430704, 0.1394456289978678, 0.27078891257995735, 0.34968017057569295, 0.4302771855010661, 0.48059701492537316, 0.5292110874200426, 0.5889125799573561, 0.6767590618336887, 0.7245202558635394, 0.7936034115138593, 0.9087420042643923, 0.9471215351812367, 0.9266524520255863, 0.8260127931769723, 0.7547974413646056, 0.6993603411513859, 0.6409381663113006, 0.5547974413646055, 0.5040511727078891, 0.45884861407249466, 0.3978678038379531, 0.3091684434968017, 0.21918976545842217, 0.0767590618336887, 0.03880597014925373, 0.01577825159914712, 0.011513859275053304, 0.5479744136460555, 0.535181236673774, 0.5373134328358209, 0.5078891257995736, 0.9176972281449893, 0.8609808102345415, 0.5326226012793177, 0.0908315565031983, 0.4388059701492537, 0.5053304904051172, 0.6805970149253732, 0.7812366737739872, 0.8622601279317698, 0.9219616204690831, 0.9445628997867804, 0.9044776119402985, 0.8170575692963753, 0.7347547974413646, 0.5791044776119403, 0.4750533049040512, 0.38933901918976543, 0.14498933901918976, 0.13176972281449895, 0.0042643923240938165, 0.003411513859275053, 0.0029850746268656717, 0.0029850746268656717, 0.0029850746268656717, 0.0029850746268656717, 0.0029850746268656717, 0.0029850746268656717, 0.003411513859275053, 0.003411513859275053, 0.003411513859275053, 0.003411513859275053, 0.005970149253731343, 0.006396588486140725, 0.008528784648187633, 0.011087420042643924, 0.014925373134328358, 0.02046908315565032, 0.02771855010660981, 0.04733475479744136, 0.08272921108742004, 0.15394456289978678, 0.24733475479744135, 0.8085287846481877], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/FTSW_RODA_SPOVE.gap.json b/pfam_gap_rates/FTSW_RODA_SPOVE.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..4043cba39ef23cbce7f8dfc022fd046fbd8061e1
--- /dev/null
+++ b/pfam_gap_rates/FTSW_RODA_SPOVE.gap.json
@@ -0,0 +1 @@
+{"family": "FTSW_RODA_SPOVE", "n_seqs": 5000, "length": 399, "gap_rates": [0.916, 0.709, 0.4822, 0.374, 0.3278, 0.2972, 0.2798, 0.2654, 0.2458, 0.2344, 0.2288, 0.4208, 0.1948, 0.1878, 0.1792, 0.1712, 0.1654, 0.1636, 0.1634, 0.1614, 0.1594, 0.1598, 0.1628, 0.2942, 0.2628, 0.2526, 0.2414, 0.231, 0.2306, 0.226, 0.2232, 0.3382, 0.2854, 0.8802, 0.2312, 0.1894, 0.1534, 0.137, 0.127, 0.106, 0.1026, 0.1012, 0.1006, 0.1, 0.0998, 0.0996, 0.0994, 0.099, 0.0988, 0.0988, 0.0988, 0.0972, 0.0974, 0.097, 0.0976, 0.0976, 0.0992, 0.0976, 0.1506, 0.1006, 0.0974, 0.9498, 0.9316, 0.0966, 0.096, 0.0962, 0.0958, 0.0958, 0.0952, 0.0952, 0.0948, 0.0946, 0.0934, 0.093, 0.0928, 0.0924, 0.0926, 0.092, 0.0914, 0.0916, 0.0918, 0.0916, 0.0918, 0.0922, 0.0934, 0.5752, 0.892, 0.9254, 0.6472, 0.1244, 0.094, 0.0936, 0.093, 0.0914, 0.091, 0.091, 0.0942, 0.0926, 0.0934, 0.0942, 0.0934, 0.0966, 0.096, 0.094, 0.9238, 0.1044, 0.0942, 0.097, 0.0904, 0.091, 0.0922, 0.0908, 0.089, 0.088, 0.087, 0.087, 0.0852, 0.0846, 0.0838, 0.084, 0.0834, 0.0838, 0.0842, 0.0844, 0.0842, 0.0836, 0.0838, 0.0846, 0.0848, 0.4744, 0.8516, 0.8832, 0.9182, 0.9254, 0.9294, 0.9324, 0.9276, 0.9222, 0.8982, 0.8664, 0.8366, 0.3248, 0.205, 0.1554, 0.1372, 0.1066, 0.1004, 0.0958, 0.0896, 0.0898, 0.086, 0.0856, 0.0858, 0.084, 0.083, 0.0794, 0.0768, 0.904, 0.0736, 0.0726, 0.0714, 0.0706, 0.069, 0.0688, 0.0678, 0.0666, 0.068, 0.0662, 0.0656, 0.0682, 0.065, 0.064, 0.0626, 0.062, 0.061, 0.0598, 0.0576, 0.0624, 0.0598, 0.0548, 0.052, 0.051, 0.0478, 0.0474, 0.0478, 0.0472, 0.0462, 0.0452, 0.0446, 0.0454, 0.0444, 0.043, 0.0424, 0.0424, 0.0426, 0.041, 0.0402, 0.0392, 0.0388, 0.0384, 0.0384, 0.0398, 0.504, 0.9084, 0.938, 0.8346, 0.4364, 0.0862, 0.0598, 0.0554, 0.056, 0.0618, 0.0706, 0.0772, 0.0858, 0.0814, 0.7678, 0.8042, 0.8324, 0.876, 0.9182, 0.9326, 0.8948, 0.8576, 0.8168, 0.7848, 0.7324, 0.0844, 0.096, 0.0952, 0.096, 0.0972, 0.1544, 0.9492, 0.118, 0.0902, 0.1322, 0.0844, 0.0838, 0.0876, 0.0878, 0.086, 0.0866, 0.0858, 0.0884, 0.0906, 0.0938, 0.0976, 0.1504, 0.1314, 0.9052, 0.9462, 0.936, 0.881, 0.1132, 0.117, 0.103, 0.0974, 0.083, 0.0826, 0.0826, 0.083, 0.0826, 0.0828, 0.0826, 0.0824, 0.0818, 0.0822, 0.0824, 0.0826, 0.0828, 0.0818, 0.0816, 0.0818, 0.0824, 0.0834, 0.0848, 0.0856, 0.085, 0.0846, 0.0854, 0.0858, 0.6842, 0.2774, 0.2226, 0.142, 0.0932, 0.0832, 0.0854, 0.0814, 0.0812, 0.0792, 0.0788, 0.0788, 0.078, 0.0778, 0.0778, 0.0778, 0.0778, 0.0776, 0.0778, 0.0778, 0.0776, 0.0772, 0.0774, 0.0772, 0.0774, 0.078, 0.0782, 0.0778, 0.0776, 0.0778, 0.0778, 0.0776, 0.0782, 0.0776, 0.0776, 0.078, 0.0772, 0.0776, 0.0784, 0.079, 0.0784, 0.0784, 0.0786, 0.0786, 0.079, 0.079, 0.079, 0.9384, 0.9416, 0.9294, 0.0788, 0.0788, 0.0792, 0.0788, 0.0782, 0.0778, 0.0776, 0.0776, 0.0776, 0.0774, 0.0774, 0.078, 0.078, 0.0782, 0.0784, 0.0776, 0.0778, 0.0776, 0.0776, 0.0774, 0.0774, 0.0772, 0.0772, 0.077, 0.0768, 0.0768, 0.0766, 0.0766, 0.0764, 0.0766, 0.0764, 0.0764, 0.077, 0.0768, 0.0772, 0.0776, 0.0778, 0.078, 0.0782, 0.0782, 0.0784, 0.0784, 0.0788, 0.0794, 0.0794, 0.0796, 0.0798, 0.0796, 0.0796, 0.0796, 0.0804, 0.0806, 0.0808, 0.0812, 0.0814, 0.0816, 0.0824, 0.083, 0.084, 0.0884, 0.1064, 0.119, 0.1348, 0.1676, 0.2546, 0.4548, 0.7622], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/FabA.gap.json b/pfam_gap_rates/FabA.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..936888396d16d120cc98610755f10c4a359e0317
--- /dev/null
+++ b/pfam_gap_rates/FabA.gap.json
@@ -0,0 +1 @@
+{"family": "FabA", "n_seqs": 2391, "length": 140, "gap_rates": [0.1614387285654538, 0.12421580928481807, 0.11250522793810121, 0.09703053115851108, 0.09368465077373483, 0.28732747804265996, 0.08113759933082393, 0.07779171894604768, 0.07360936846507737, 0.06691760769552489, 0.06649937264742785, 0.06524466750313676, 0.0644081974069427, 0.0644081974069427, 0.06357172731074864, 0.06357172731074864, 0.06357172731074864, 0.7557507319113341, 0.19280635717273106, 0.08866583019657047, 0.07193642827268926, 0.0945211208699289, 0.8084483479715601, 0.8055207026348808, 0.7979924717691342, 0.7833542450857381, 0.7344207444583856, 0.05938937682977834, 0.044332915098285235, 0.03889585947302384, 0.03304056879966541, 0.028439983270598077, 0.020075282308657464, 0.01631116687578419, 0.012547051442910916, 0.010874111250522794, 0.00878293601003764, 0.00878293601003764, 0.008364700961940611, 0.00878293601003764, 0.006691760769552488, 0.0075282308657465494, 0.010455876202425763, 0.019657047260560435, 0.02258469259723965, 0.013801756587202008, 0.008364700961940611, 0.009619406106231703, 0.009201171058134672, 0.0075282308657465494, 0.006273525721455458, 0.005437055625261397, 0.005855290673358427, 0.005437055625261397, 0.005437055625261397, 0.006273525721455458, 0.006691760769552488, 0.009201171058134672, 0.009619406106231703, 0.009201171058134672, 0.009619406106231703, 0.00878293601003764, 0.00878293601003764, 0.011292346298619825, 0.010874111250522794, 0.014638226683396068, 0.012547051442910916, 0.014638226683396068, 0.014638226683396068, 0.01631116687578419, 0.019238812212463405, 0.08448347971560016, 0.14889167712254286, 0.6060225846925973, 0.27185278126306983, 0.09661229611041405, 0.06315349226265161, 0.08657465495608532, 0.6532831451275617, 0.6369719782517775, 0.5951484734420744, 0.36260978670012545, 0.24759514847344208, 0.20911752404851527, 0.191969887076537, 0.17733166039314094, 0.1685487243831033, 0.020911752404851526, 0.019238812212463405, 0.019238812212463405, 0.018402342116269343, 0.018402342116269343, 0.018402342116269343, 0.019238812212463405, 0.019238812212463405, 0.018402342116269343, 0.019238812212463405, 0.019657047260560435, 0.019657047260560435, 0.020075282308657464, 0.020075282308657464, 0.020493517356754497, 0.8013383521539105, 0.04307820995399415, 0.04307820995399415, 0.02425763278962777, 0.027185278126306986, 0.03220409870347135, 0.034713508992053534, 0.03554997908824759, 0.03805938937682978, 0.04015056461731493, 0.044332915098285235, 0.7883730656629026, 0.9473023839397742, 0.7327478042659975, 0.6398996235884568, 0.06398996235884567, 0.06106231702216646, 0.06148055207026349, 0.06273525721455459, 0.06524466750313676, 0.06691760769552489, 0.06691760769552489, 0.06900878293601004, 0.0698452530322041, 0.06900878293601004, 0.06942701798410707, 0.07068172312839816, 0.07151819322459223, 0.07360936846507737, 0.07611877875365956, 0.07653701380175659, 0.08030112923462986, 0.08741112505227938, 0.09828523630280217, 0.10790464240903387, 0.13634462567963196, 0.20786281890422417, 0.7791718946047679], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Fae.gap.json b/pfam_gap_rates/Fae.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..5e3225a22a302c8ceff41a7ddd1b5493fd72a76e
--- /dev/null
+++ b/pfam_gap_rates/Fae.gap.json
@@ -0,0 +1 @@
+{"family": "Fae", "n_seqs": 150, "length": 167, "gap_rates": [0.13333333333333333, 0.02, 0.02, 0.02, 0.02, 0.02, 0.02, 0.02, 0.02, 0.02, 0.6933333333333334, 0.8066666666666666, 0.6933333333333334, 0.02666666666666667, 0.02, 0.02, 0.02, 0.02, 0.02, 0.02, 0.02, 0.02, 0.02, 0.02666666666666667, 0.02, 0.02, 0.02, 0.02, 0.02666666666666667, 0.02666666666666667, 0.02666666666666667, 0.02666666666666667, 0.02666666666666667, 0.02666666666666667, 0.02666666666666667, 0.02666666666666667, 0.02, 0.02, 0.19333333333333333, 0.02666666666666667, 0.02666666666666667, 0.013333333333333334, 0.013333333333333334, 0.013333333333333334, 0.013333333333333334, 0.02, 0.013333333333333334, 0.013333333333333334, 0.013333333333333334, 0.013333333333333334, 0.013333333333333334, 0.013333333333333334, 0.013333333333333334, 0.013333333333333334, 0.013333333333333334, 0.013333333333333334, 0.013333333333333334, 0.013333333333333334, 0.013333333333333334, 0.013333333333333334, 0.013333333333333334, 0.013333333333333334, 0.013333333333333334, 0.013333333333333334, 0.013333333333333334, 0.013333333333333334, 0.013333333333333334, 0.006666666666666667, 0.006666666666666667, 0.006666666666666667, 0.006666666666666667, 0.006666666666666667, 0.006666666666666667, 0.006666666666666667, 0.006666666666666667, 0.006666666666666667, 0.006666666666666667, 0.006666666666666667, 0.02, 0.02, 0.02, 0.02, 0.02, 0.02, 0.02, 0.02, 0.02, 0.02, 0.02, 0.02, 0.02, 0.02, 0.02, 0.02666666666666667, 0.02666666666666667, 0.02666666666666667, 0.02666666666666667, 0.03333333333333333, 0.02666666666666667, 0.02666666666666667, 0.02666666666666667, 0.02, 0.02, 0.02, 0.02, 0.02, 0.02, 0.02, 0.02, 0.02, 0.02, 0.02, 0.02, 0.02, 0.02, 0.02666666666666667, 0.02, 0.02, 0.02, 0.72, 0.7266666666666667, 0.74, 0.72, 0.72, 0.02, 0.02, 0.02, 0.02, 0.02, 0.02, 0.02, 0.02, 0.02, 0.02, 0.02, 0.02, 0.02, 0.02, 0.02, 0.02, 0.02, 0.02, 0.02, 0.02, 0.02, 0.02666666666666667, 0.02666666666666667, 0.02666666666666667, 0.03333333333333333, 0.03333333333333333, 0.03333333333333333, 0.03333333333333333, 0.03333333333333333, 0.03333333333333333, 0.03333333333333333, 0.03333333333333333, 0.03333333333333333, 0.03333333333333333, 0.03333333333333333, 0.03333333333333333, 0.03333333333333333, 0.04, 0.04, 0.04, 0.04, 0.08, 0.8333333333333334], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Fam20C.gap.json b/pfam_gap_rates/Fam20C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c858d499592d97a3e7d380ee21f71520e773c84f
--- /dev/null
+++ b/pfam_gap_rates/Fam20C.gap.json
@@ -0,0 +1 @@
+{"family": "Fam20C", "n_seqs": 184, "length": 222, "gap_rates": [0.4673913043478261, 0.41847826086956524, 0.3858695652173913, 0.32065217391304346, 0.29347826086956524, 0.22826086956521738, 0.17391304347826086, 0.17391304347826086, 0.17391304347826086, 0.17391304347826086, 0.17391304347826086, 0.17391304347826086, 0.17391304347826086, 0.17391304347826086, 0.17391304347826086, 0.46195652173913043, 0.17391304347826086, 0.17391304347826086, 0.17391304347826086, 0.17391304347826086, 0.17391304347826086, 0.17391304347826086, 0.16847826086956522, 0.16847826086956522, 0.16847826086956522, 0.16847826086956522, 0.16847826086956522, 0.16304347826086957, 0.16304347826086957, 0.9293478260869565, 0.16304347826086957, 0.16304347826086957, 0.15760869565217392, 0.15217391304347827, 0.15217391304347827, 0.15217391304347827, 0.15217391304347827, 0.15217391304347827, 0.15217391304347827, 0.15217391304347827, 0.15217391304347827, 0.15217391304347827, 0.15760869565217392, 0.15760869565217392, 0.16304347826086957, 0.17391304347826086, 0.45108695652173914, 0.4076086956521739, 0.23369565217391305, 0.24456521739130435, 0.16304347826086957, 0.16304347826086957, 0.16304347826086957, 0.16304347826086957, 0.16304347826086957, 0.16304347826086957, 0.16304347826086957, 0.16304347826086957, 0.16304347826086957, 0.1793478260869565, 0.1793478260869565, 0.17391304347826086, 0.17391304347826086, 0.16847826086956522, 0.18478260869565216, 0.18478260869565216, 0.1793478260869565, 0.1793478260869565, 0.1793478260869565, 0.19021739130434784, 0.19021739130434784, 0.19021739130434784, 0.17391304347826086, 0.17391304347826086, 0.17391304347826086, 0.17391304347826086, 0.17391304347826086, 0.8586956521739131, 0.16847826086956522, 0.16847826086956522, 0.16847826086956522, 0.19021739130434784, 0.21739130434782608, 0.20652173913043478, 0.21195652173913043, 0.1956521739130435, 0.19021739130434784, 0.1793478260869565, 0.16304347826086957, 0.14130434782608695, 0.14130434782608695, 0.14130434782608695, 0.14130434782608695, 0.14130434782608695, 0.14130434782608695, 0.14130434782608695, 0.14130434782608695, 0.14130434782608695, 0.14130434782608695, 0.14130434782608695, 0.14130434782608695, 0.14130434782608695, 0.1358695652173913, 0.13043478260869565, 0.13043478260869565, 0.125, 0.11413043478260869, 0.11956521739130435, 0.11956521739130435, 0.11413043478260869, 0.11413043478260869, 0.11413043478260869, 0.11413043478260869, 0.11413043478260869, 0.10869565217391304, 0.11956521739130435, 0.13043478260869565, 0.17391304347826086, 0.1956521739130435, 0.22826086956521738, 0.875, 0.17391304347826086, 0.16304347826086957, 0.11956521739130435, 0.11413043478260869, 0.11413043478260869, 0.11413043478260869, 0.11413043478260869, 0.11413043478260869, 0.11413043478260869, 0.11413043478260869, 0.11413043478260869, 0.11956521739130435, 0.14130434782608695, 0.14673913043478262, 0.14673913043478262, 0.14673913043478262, 0.14673913043478262, 0.15217391304347827, 0.14673913043478262, 0.14673913043478262, 0.14130434782608695, 0.14130434782608695, 0.14673913043478262, 0.14673913043478262, 0.14673913043478262, 0.14673913043478262, 0.14673913043478262, 0.14673913043478262, 0.14673913043478262, 0.14673913043478262, 0.14673913043478262, 0.14673913043478262, 0.13043478260869565, 0.13043478260869565, 0.13043478260869565, 0.13043478260869565, 0.1358695652173913, 0.1358695652173913, 0.14673913043478262, 0.14673913043478262, 0.14673913043478262, 0.1358695652173913, 0.14130434782608695, 0.1358695652173913, 0.14673913043478262, 0.14673913043478262, 0.14673913043478262, 0.46195652173913043, 0.41304347826086957, 0.16304347826086957, 0.15760869565217392, 0.15760869565217392, 0.15760869565217392, 0.1358695652173913, 0.13043478260869565, 0.13043478260869565, 0.1358695652173913, 0.14130434782608695, 0.14130434782608695, 0.1358695652173913, 0.13043478260869565, 0.13043478260869565, 0.13043478260869565, 0.9402173913043478, 0.14130434782608695, 0.13043478260869565, 0.13043478260869565, 0.13043478260869565, 0.13043478260869565, 0.13043478260869565, 0.13043478260869565, 0.13043478260869565, 0.13043478260869565, 0.13043478260869565, 0.13043478260869565, 0.13043478260869565, 0.1358695652173913, 0.1358695652173913, 0.1358695652173913, 0.1358695652173913, 0.1358695652173913, 0.1358695652173913, 0.1358695652173913, 0.1358695652173913, 0.1358695652173913, 0.1358695652173913, 0.1358695652173913, 0.14130434782608695, 0.14130434782608695, 0.14130434782608695, 0.14130434782608695, 0.14130434782608695, 0.14673913043478262, 0.16304347826086957, 0.1793478260869565, 0.24456521739130435, 0.3641304347826087, 0.42391304347826086, 0.4782608695652174, 0.5217391304347826, 0.8369565217391305], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/FctA.gap.json b/pfam_gap_rates/FctA.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..9222ed270a74182d442d23e49202c280733dc923
--- /dev/null
+++ b/pfam_gap_rates/FctA.gap.json
@@ -0,0 +1 @@
+{"family": "FctA", "n_seqs": 273, "length": 183, "gap_rates": [0.6227106227106227, 0.36996336996337, 0.24175824175824176, 0.21245421245421245, 0.20146520146520147, 0.19047619047619047, 0.16117216117216118, 0.16117216117216118, 0.14652014652014653, 0.7985347985347986, 0.8937728937728938, 0.9230769230769231, 0.8608058608058609, 0.5531135531135531, 0.13186813186813187, 0.13186813186813187, 0.10622710622710622, 0.09157509157509157, 0.07692307692307693, 0.07326007326007326, 0.06593406593406594, 0.06227106227106227, 0.06227106227106227, 0.06227106227106227, 0.06227106227106227, 0.06227106227106227, 0.06227106227106227, 0.06227106227106227, 0.0695970695970696, 0.07326007326007326, 0.12087912087912088, 0.11355311355311355, 0.09523809523809523, 0.1282051282051282, 0.12454212454212454, 0.10256410256410256, 0.08791208791208792, 0.09523809523809523, 0.08424908424908426, 0.08424908424908426, 0.08058608058608059, 0.08424908424908426, 0.08424908424908426, 0.0989010989010989, 0.31868131868131866, 0.40293040293040294, 0.4065934065934066, 0.4358974358974359, 0.4358974358974359, 0.4432234432234432, 0.4725274725274725, 0.4908424908424908, 0.6483516483516484, 0.4981684981684982, 0.8681318681318682, 0.9120879120879121, 0.7838827838827839, 0.3956043956043956, 0.46153846153846156, 0.6886446886446886, 0.7509157509157509, 0.8131868131868132, 0.8644688644688645, 0.8864468864468864, 0.9047619047619048, 0.9340659340659341, 0.9413919413919414, 0.9377289377289377, 0.9084249084249084, 0.8937728937728938, 0.8754578754578755, 0.8388278388278388, 0.7985347985347986, 0.7106227106227107, 0.5824175824175825, 0.014652014652014652, 0.03663003663003663, 0.0695970695970696, 0.04395604395604396, 0.05128205128205128, 0.06593406593406594, 0.04395604395604396, 0.7655677655677655, 0.8717948717948718, 0.8937728937728938, 0.9487179487179487, 0.9084249084249084, 0.8827838827838828, 0.8571428571428571, 0.7619047619047619, 0.03296703296703297, 0.047619047619047616, 0.047619047619047616, 0.03296703296703297, 0.9010989010989011, 0.9304029304029304, 0.945054945054945, 0.9340659340659341, 0.9157509157509157, 0.8974358974358975, 0.7216117216117216, 0.08424908424908426, 0.040293040293040296, 0.01098901098901099, 0.01098901098901099, 0.01098901098901099, 0.01098901098901099, 0.003663003663003663, 0.003663003663003663, 0.05860805860805861, 0.03663003663003663, 0.03296703296703297, 0.04395604395604396, 0.01098901098901099, 0.6483516483516484, 0.8681318681318682, 0.9194139194139194, 0.945054945054945, 0.945054945054945, 0.9267399267399268, 0.8937728937728938, 0.73992673992674, 0.08791208791208792, 0.01098901098901099, 0.014652014652014652, 0.014652014652014652, 0.01098901098901099, 0.007326007326007326, 0.03663003663003663, 0.018315018315018316, 0.01098901098901099, 0.01098901098901099, 0.02564102564102564, 0.014652014652014652, 0.007326007326007326, 0.007326007326007326, 0.007326007326007326, 0.007326007326007326, 0.007326007326007326, 0.1575091575091575, 0.9487179487179487, 0.1391941391941392, 0.06227106227106227, 0.06227106227106227, 0.03296703296703297, 0.9377289377289377, 0.9047619047619048, 0.07326007326007326, 0.05128205128205128, 0.05128205128205128, 0.05860805860805861, 0.05128205128205128, 0.05860805860805861, 0.0695970695970696, 0.16483516483516483, 0.21978021978021978, 0.34798534798534797, 0.5934065934065934, 0.6813186813186813, 0.8205128205128205, 0.8534798534798534, 0.8754578754578755, 0.9120879120879121, 0.9487179487179487, 0.9304029304029304, 0.8864468864468864, 0.8681318681318682, 0.8388278388278388, 0.7619047619047619, 0.6263736263736264, 0.5641025641025641, 0.2893772893772894, 0.1978021978021978, 0.14652014652014653, 0.12087912087912088, 0.11721611721611722, 0.10622710622710622, 0.10622710622710622, 0.10989010989010989, 0.10989010989010989, 0.14285714285714285, 0.20146520146520147, 0.5054945054945055], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/FdsD.gap.json b/pfam_gap_rates/FdsD.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..0cd4ea2b82e45a62d435a523c3346df06cfcc78b
--- /dev/null
+++ b/pfam_gap_rates/FdsD.gap.json
@@ -0,0 +1 @@
+{"family": "FdsD", "n_seqs": 155, "length": 65, "gap_rates": [0.22580645161290322, 0.08387096774193549, 0.07096774193548387, 0.05161290322580645, 0.012903225806451613, 0.0064516129032258064, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0064516129032258064, 0.0064516129032258064, 0.012903225806451613, 0.0064516129032258064, 0.5483870967741935, 0.03225806451612903, 0.01935483870967742, 0.0064516129032258064, 0.0, 0.04516129032258064, 0.0064516129032258064, 0.0064516129032258064, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.03225806451612903, 0.03870967741935484, 0.03870967741935484, 0.9161290322580645, 0.9354838709677419, 0.7741935483870968, 0.03870967741935484, 0.012903225806451613, 0.012903225806451613, 0.012903225806451613, 0.012903225806451613, 0.025806451612903226, 0.9419354838709677, 0.025806451612903226, 0.025806451612903226, 0.03225806451612903, 0.03225806451612903, 0.03225806451612903, 0.03870967741935484, 0.05161290322580645, 0.09032258064516129, 0.4], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Fe-S_assembly.gap.json b/pfam_gap_rates/Fe-S_assembly.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..76ce18dfe7f2dacc84edce62b4d62558c85d2cba
--- /dev/null
+++ b/pfam_gap_rates/Fe-S_assembly.gap.json
@@ -0,0 +1 @@
+{"family": "Fe-S_assembly", "n_seqs": 197, "length": 68, "gap_rates": [0.06091370558375635, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.9086294416243654, 0.0, 0.0, 0.0, 0.0, 0.0, 0.9289340101522843, 0.9289340101522843, 0.9289340101522843, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.015228426395939087, 0.015228426395939087, 0.015228426395939087, 0.015228426395939087, 0.015228426395939087, 0.015228426395939087, 0.015228426395939087, 0.015228426395939087, 0.015228426395939087, 0.015228426395939087, 0.015228426395939087, 0.015228426395939087, 0.015228426395939087, 0.015228426395939087, 0.02030456852791878, 0.04060913705583756, 0.08629441624365482, 0.7208121827411168], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Fer4_7.gap.json b/pfam_gap_rates/Fer4_7.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..5381f5abd466c2e36cf17df9a41d5d432178cbdf
--- /dev/null
+++ b/pfam_gap_rates/Fer4_7.gap.json
@@ -0,0 +1 @@
+{"family": "Fer4_7", "n_seqs": 5000, "length": 99, "gap_rates": [0.3452, 0.049, 0.0314, 0.01, 0.0062, 0.0056, 0.004, 0.0026, 0.0014, 0.0, 0.0, 0.0, 0.0, 0.941, 0.9264, 0.005, 0.0056, 0.005, 0.0046, 0.0052, 0.0056, 0.0132, 0.913, 0.9492, 0.931, 0.9072, 0.0146, 0.063, 0.3286, 0.3166, 0.2778, 0.245, 0.7562, 0.8244, 0.8406, 0.8568, 0.871, 0.8916, 0.9072, 0.9316, 0.9434, 0.9238, 0.8958, 0.8848, 0.863, 0.8504, 0.8334, 0.7712, 0.7424, 0.2246, 0.225, 0.7674, 0.8784, 0.9128, 0.9386, 0.9422, 0.9284, 0.8996, 0.7896, 0.7384, 0.137, 0.0524, 0.0042, 0.8974, 0.9194, 0.9392, 0.9464, 0.932, 0.9032, 0.8756, 0.002, 0.0016, 0.0018, 0.0012, 0.0006, 0.0006, 0.0006, 0.0006, 0.0006, 0.0006, 0.946, 0.9462, 0.9464, 0.9462, 0.9462, 0.946, 0.0006, 0.0008, 0.9446, 0.9442, 0.002, 0.002, 0.0032, 0.0044, 0.0046, 0.012, 0.0806, 0.205, 0.3672], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Fer4_8.gap.json b/pfam_gap_rates/Fer4_8.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..722ba9e630083a58dbfd372bf44a709add270fec
--- /dev/null
+++ b/pfam_gap_rates/Fer4_8.gap.json
@@ -0,0 +1 @@
+{"family": "Fer4_8", "n_seqs": 3876, "length": 144, "gap_rates": [0.9269865841073271, 0.3815789473684211, 0.0869453044375645, 0.00980392156862745, 0.0023219814241486067, 0.001805985552115583, 0.0015479876160990713, 0.0015479876160990713, 0.0015479876160990713, 0.0012899896800825593, 0.0010319917440660474, 0.0010319917440660474, 0.900670794633643, 0.9009287925696594, 0.9401444788441693, 0.9055727554179567, 0.9009287925696594, 0.900670794633643, 0.0010319917440660474, 0.0010319917440660474, 0.0007739938080495357, 0.0007739938080495357, 0.7964396284829721, 0.8041795665634675, 0.8132094943240454, 0.868937048503612, 0.8738390092879257, 0.9146026831785345, 0.8779669762641898, 0.8733230134158927, 0.8457172342621259, 0.804437564499484, 0.7974716202270382, 0.7930856553147575, 0.0030959752321981426, 0.030959752321981424, 0.026573787409700723, 0.018833849329205368, 0.8869969040247678, 0.8895768833849329, 0.8962848297213623, 0.8986068111455109, 0.8991228070175439, 0.9295665634674922, 0.9465944272445821, 0.9478844169246646, 0.9489164086687306, 0.9478844169246646, 0.9427244582043344, 0.9058307533539731, 0.8986068111455109, 0.8970588235294118, 0.8900928792569659, 0.8888028895768834, 0.8857069143446853, 0.016511867905056758, 0.053405572755417956, 0.6475748194014448, 0.0500515995872033, 0.043343653250773995, 0.043601651186790505, 0.03998968008255934, 0.03457172342621259, 0.032249742002063986, 0.033023735810113516, 0.033023735810113516, 0.034055727554179564, 0.04231166150670795, 0.037925696594427245, 0.02347781217750258, 0.49922600619195046, 0.5828173374613003, 0.6609907120743034, 0.7835397316821465, 0.8771929824561403, 0.93343653250774, 0.9465944272445821, 0.9429824561403509, 0.9094427244582043, 0.8196594427244582, 0.7012383900928792, 0.609391124871001, 0.5487616099071208, 0.48374613003095973, 0.40479876160990713, 0.40608875128998967, 0.3498452012383901, 0.3480392156862745, 0.36016511867905054, 0.36480908152734776, 0.36609907120743035, 0.47729618163054693, 0.45923632610939114, 0.08849329205366357, 0.36480908152734776, 0.43550051599587203, 0.6047471620227038, 0.7087203302373581, 0.7804437564499485, 0.8312693498452013, 0.8555211558307534, 0.8660990712074303, 0.8774509803921569, 0.8859649122807017, 0.9066047471620227, 0.9197626418988648, 0.9308565531475749, 0.9406604747162023, 0.9478844169246646, 0.9370485036119711, 0.925954592363261, 0.9140866873065016, 0.8921568627450981, 0.8828689370485037, 0.8704850361197111, 0.8609391124871001, 0.8423632610939112, 0.8129514963880289, 0.7432920536635707, 0.6599587203302374, 0.5425696594427245, 0.40505675954592363, 0.35345717234262125, 0.048503611971104234, 0.04102167182662539, 0.03018575851393189, 0.0010319917440660474, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0012899896800825593, 0.0007739938080495357, 0.0, 0.0, 0.0020639834881320948, 0.006707946336429308, 0.053663570691434466, 0.17260061919504643], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Fimbrial.gap.json b/pfam_gap_rates/Fimbrial.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..5abfca305ab263d69880e45c333ce92cf607a75d
--- /dev/null
+++ b/pfam_gap_rates/Fimbrial.gap.json
@@ -0,0 +1 @@
+{"family": "Fimbrial", "n_seqs": 320, "length": 198, "gap_rates": [0.81875, 0.5875, 0.44375, 0.41875, 0.3875, 0.315625, 0.278125, 0.928125, 0.771875, 0.634375, 0.109375, 0.084375, 0.06875, 0.05, 0.046875, 0.046875, 0.046875, 0.046875, 0.046875, 0.05, 0.059375, 0.078125, 0.26875, 0.86875, 0.946875, 0.8875, 0.453125, 0.05625, 0.0375, 0.0375, 0.034375, 0.028125, 0.028125, 0.028125, 0.028125, 0.05625, 0.065625, 0.05, 0.046875, 0.046875, 0.046875, 0.03125, 0.784375, 0.921875, 0.875, 0.415625, 0.2125, 0.1375, 0.046875, 0.040625, 0.028125, 0.021875, 0.01875, 0.01875, 0.01875, 0.021875, 0.021875, 0.01875, 0.01875, 0.921875, 0.9375, 0.384375, 0.015625, 0.01875, 0.01875, 0.01875, 0.790625, 0.871875, 0.90625, 0.94375, 0.921875, 0.8875, 0.821875, 0.7375, 0.64375, 0.4, 0.25625, 0.084375, 0.0375, 0.01875, 0.015625, 0.015625, 0.05, 0.025, 0.021875, 0.8125, 0.890625, 0.6875, 0.015625, 0.0125, 0.0125, 0.003125, 0.003125, 0.0, 0.0, 0.0, 0.0, 0.003125, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.11875, 0.278125, 0.859375, 0.43125, 0.8125, 0.93125, 0.875, 0.709375, 0.359375, 0.0125, 0.0125, 0.0125, 0.00625, 0.00625, 0.009375, 0.115625, 0.04375, 0.021875, 0.021875, 0.040625, 0.015625, 0.01875, 0.828125, 0.94375, 0.9, 0.684375, 0.021875, 0.071875, 0.071875, 0.05, 0.084375, 0.0875, 0.0625, 0.803125, 0.859375, 0.909375, 0.921875, 0.940625, 0.928125, 0.91875, 0.896875, 0.834375, 0.746875, 0.046875, 0.0875, 0.0625, 0.05625, 0.046875, 0.034375, 0.03125, 0.034375, 0.053125, 0.08125, 0.11875, 0.4625, 0.896875, 0.809375, 0.5125, 0.34375, 0.08125, 0.053125, 0.021875, 0.021875, 0.021875, 0.025, 0.021875, 0.021875, 0.021875, 0.909375, 0.940625, 0.85, 0.021875, 0.153125, 0.45625, 0.0375, 0.021875, 0.021875, 0.028125, 0.93125, 0.025, 0.021875, 0.021875, 0.021875, 0.021875, 0.021875, 0.025, 0.025, 0.025, 0.025, 0.028125, 0.03125, 0.04375, 0.075, 0.584375], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/FixH.gap.json b/pfam_gap_rates/FixH.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a91d8987105b0d6e987188587a2739985ea4c550
--- /dev/null
+++ b/pfam_gap_rates/FixH.gap.json
@@ -0,0 +1 @@
+{"family": "FixH", "n_seqs": 405, "length": 161, "gap_rates": [0.6049382716049383, 0.4888888888888889, 0.3308641975308642, 0.23703703703703705, 0.17530864197530865, 0.145679012345679, 0.5851851851851851, 0.5679012345679012, 0.5259259259259259, 0.5037037037037037, 0.09876543209876543, 0.09135802469135802, 0.07901234567901234, 0.08148148148148149, 0.08148148148148149, 0.08641975308641975, 0.08395061728395062, 0.07901234567901234, 0.08148148148148149, 0.07160493827160494, 0.08395061728395062, 0.08148148148148149, 0.08395061728395062, 0.08148148148148149, 0.07407407407407407, 0.06419753086419754, 0.06172839506172839, 0.07407407407407407, 0.07654320987654321, 0.07407407407407407, 0.06419753086419754, 0.044444444444444446, 0.037037037037037035, 0.037037037037037035, 0.04197530864197531, 0.10864197530864197, 0.044444444444444446, 0.03950617283950617, 0.03950617283950617, 0.03950617283950617, 0.044444444444444446, 0.04197530864197531, 0.044444444444444446, 0.044444444444444446, 0.04197530864197531, 0.037037037037037035, 0.03950617283950617, 0.037037037037037035, 0.0345679012345679, 0.03209876543209877, 0.14814814814814814, 0.145679012345679, 0.1654320987654321, 0.04691358024691358, 0.044444444444444446, 0.03950617283950617, 0.044444444444444446, 0.044444444444444446, 0.044444444444444446, 0.04938271604938271, 0.04691358024691358, 0.044444444444444446, 0.044444444444444446, 0.04691358024691358, 0.044444444444444446, 0.04197530864197531, 0.05185185185185185, 0.05185185185185185, 0.056790123456790124, 0.05432098765432099, 0.05185185185185185, 0.05185185185185185, 0.7283950617283951, 0.7703703703703704, 0.8493827160493828, 0.8839506172839506, 0.782716049382716, 0.762962962962963, 0.6864197530864198, 0.05925925925925926, 0.05925925925925926, 0.05925925925925926, 0.05432098765432099, 0.05432098765432099, 0.05432098765432099, 0.07160493827160494, 0.49382716049382713, 0.4444444444444444, 0.9481481481481482, 0.19753086419753085, 0.1580246913580247, 0.10123456790123457, 0.08888888888888889, 0.07407407407407407, 0.9432098765432099, 0.07160493827160494, 0.0691358024691358, 0.06419753086419754, 0.05925925925925926, 0.05925925925925926, 0.056790123456790124, 0.056790123456790124, 0.05925925925925926, 0.06419753086419754, 0.06172839506172839, 0.06419753086419754, 0.05925925925925926, 0.05925925925925926, 0.05925925925925926, 0.05925925925925926, 0.05925925925925926, 0.05925925925925926, 0.05925925925925926, 0.05925925925925926, 0.05925925925925926, 0.05925925925925926, 0.05925925925925926, 0.05925925925925926, 0.05925925925925926, 0.05925925925925926, 0.9432098765432099, 0.254320987654321, 0.07407407407407407, 0.0691358024691358, 0.06666666666666667, 0.05925925925925926, 0.0691358024691358, 0.05925925925925926, 0.05925925925925926, 0.05925925925925926, 0.11851851851851852, 0.08148148148148149, 0.09382716049382717, 0.08148148148148149, 0.20246913580246914, 0.9012345679012346, 0.06172839506172839, 0.06172839506172839, 0.06172839506172839, 0.06172839506172839, 0.06172839506172839, 0.06172839506172839, 0.06172839506172839, 0.06666666666666667, 0.06666666666666667, 0.7950617283950617, 0.36049382716049383, 0.35802469135802467, 0.11851851851851852, 0.13333333333333333, 0.12345679012345678, 0.13333333333333333, 0.1580246913580247, 0.17777777777777778, 0.19506172839506172, 0.2123456790123457, 0.25679012345679014, 0.29876543209876544, 0.35555555555555557, 0.4246913580246914, 0.5876543209876544], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Flg_bb_rod.gap.json b/pfam_gap_rates/Flg_bb_rod.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a39c0922413b5d9363dbad57d4aaf13aa062ff48
--- /dev/null
+++ b/pfam_gap_rates/Flg_bb_rod.gap.json
@@ -0,0 +1 @@
+{"family": "Flg_bb_rod", "n_seqs": 4755, "length": 31, "gap_rates": [0.3768664563617245, 0.3019978969505783, 0.20630914826498423, 0.15141955835962145, 0.1259726603575184, 0.11167192429022083, 0.0914826498422713, 0.07360672975814932, 0.06919032597266035, 0.05930599369085174, 0.049001051524710834, 0.03659305993690852, 0.023133543638275498, 0.014931650893796004, 0.009884332281808622, 0.006309148264984227, 0.002733964248159832, 0.0002103049421661409, 0.0002103049421661409, 0.0, 0.0, 0.0002103049421661409, 0.0002103049421661409, 0.0004206098843322818, 0.0012618296529968455, 0.015772870662460567, 0.04185068349106204, 0.05636172450052576, 0.13753943217665615, 0.1665615141955836, 0.3011566771819138], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/FliG_C.gap.json b/pfam_gap_rates/FliG_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..815ceed8a7887a47eb61f32d25fea39ac76034ba
--- /dev/null
+++ b/pfam_gap_rates/FliG_C.gap.json
@@ -0,0 +1 @@
+{"family": "FliG_C", "n_seqs": 997, "length": 108, "gap_rates": [0.7251755265797393, 0.17953861584754263, 0.06820461384152457, 0.062186559679037114, 0.05616850551654965, 0.05115346038114343, 0.048144433299899696, 0.04513540621865597, 0.044132397191574725, 0.04312938816449348, 0.041123370110330994, 0.041123370110330994, 0.041123370110330994, 0.04012036108324975, 0.03811434302908726, 0.026078234704112337, 0.024072216649949848, 0.02106318956870612, 0.020060180541624874, 0.0160481444332999, 0.013039117352056168, 0.010030090270812437, 0.007021063189568706, 0.0050150451354062184, 0.004012036108324975, 0.004012036108324975, 0.004012036108324975, 0.003009027081243731, 0.003009027081243731, 0.003009027081243731, 0.0020060180541624875, 0.0020060180541624875, 0.0020060180541624875, 0.0020060180541624875, 0.0020060180541624875, 0.0020060180541624875, 0.0020060180541624875, 0.0020060180541624875, 0.0020060180541624875, 0.0020060180541624875, 0.0020060180541624875, 0.0020060180541624875, 0.0020060180541624875, 0.0020060180541624875, 0.0020060180541624875, 0.0020060180541624875, 0.0020060180541624875, 0.0020060180541624875, 0.0020060180541624875, 0.0020060180541624875, 0.0020060180541624875, 0.0020060180541624875, 0.0020060180541624875, 0.0020060180541624875, 0.0020060180541624875, 0.0020060180541624875, 0.0020060180541624875, 0.0010030090270812437, 0.0010030090270812437, 0.0010030090270812437, 0.0010030090270812437, 0.0010030090270812437, 0.0, 0.0, 0.0, 0.0010030090270812437, 0.0020060180541624875, 0.003009027081243731, 0.0020060180541624875, 0.0010030090270812437, 0.004012036108324975, 0.004012036108324975, 0.004012036108324975, 0.003009027081243731, 0.0050150451354062184, 0.007021063189568706, 0.010030090270812437, 0.00802407221664995, 0.012036108324974924, 0.004012036108324975, 0.004012036108324975, 0.0020060180541624875, 0.0020060180541624875, 0.0020060180541624875, 0.0020060180541624875, 0.003009027081243731, 0.0020060180541624875, 0.0020060180541624875, 0.0020060180541624875, 0.0020060180541624875, 0.0020060180541624875, 0.0020060180541624875, 0.0020060180541624875, 0.0020060180541624875, 0.0020060180541624875, 0.0020060180541624875, 0.0020060180541624875, 0.007021063189568706, 0.015045135406218655, 0.022066198595787363, 0.025075225677031094, 0.0320962888665998, 0.034102306920762285, 0.034102306920762285, 0.03610832497492478, 0.04714142427281846, 0.06920762286860582, 0.20561685055165496], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Flocculin.gap.json b/pfam_gap_rates/Flocculin.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..fbb4017248683248112ab41a4357d627a06c839a
--- /dev/null
+++ b/pfam_gap_rates/Flocculin.gap.json
@@ -0,0 +1 @@
+{"family": "Flocculin", "n_seqs": 280, "length": 41, "gap_rates": [0.675, 0.2, 0.060714285714285714, 0.02142857142857143, 0.014285714285714285, 0.010714285714285714, 0.010714285714285714, 0.010714285714285714, 0.010714285714285714, 0.010714285714285714, 0.007142857142857143, 0.0035714285714285713, 0.0035714285714285713, 0.0, 0.0, 0.18214285714285713, 0.0, 0.0, 0.007142857142857143, 0.007142857142857143, 0.0, 0.0035714285714285713, 0.0, 0.0, 0.0, 0.02142857142857143, 0.0, 0.0035714285714285713, 0.0035714285714285713, 0.0035714285714285713, 0.0035714285714285713, 0.0035714285714285713, 0.0035714285714285713, 0.0035714285714285713, 0.0035714285714285713, 0.0035714285714285713, 0.010714285714285714, 0.010714285714285714, 0.010714285714285714, 0.014285714285714285, 0.017857142857142856], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Fmp27_SW.gap.json b/pfam_gap_rates/Fmp27_SW.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..3590169eb58321d1578d5eabacc9d75d6f365758
--- /dev/null
+++ b/pfam_gap_rates/Fmp27_SW.gap.json
@@ -0,0 +1 @@
+{"family": "Fmp27_SW", "n_seqs": 144, "length": 117, "gap_rates": [0.19444444444444445, 0.11805555555555555, 0.041666666666666664, 0.013888888888888888, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.006944444444444444, 0.006944444444444444, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.034722222222222224, 0.034722222222222224, 0.020833333333333332, 0.027777777777777776, 0.006944444444444444, 0.013888888888888888, 0.006944444444444444, 0.006944444444444444, 0.0, 0.006944444444444444, 0.0, 0.0, 0.006944444444444444, 0.027777777777777776, 0.4236111111111111, 0.18055555555555555, 0.08333333333333333, 0.06944444444444445, 0.0625, 0.041666666666666664, 0.041666666666666664, 0.04861111111111111, 0.034722222222222224, 0.04861111111111111, 0.14583333333333334, 0.9236111111111112, 0.9375, 0.9444444444444444, 0.9444444444444444, 0.9444444444444444, 0.9444444444444444, 0.9444444444444444, 0.9444444444444444, 0.9444444444444444, 0.9444444444444444, 0.9375, 0.9097222222222222, 0.006944444444444444, 0.006944444444444444, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.06944444444444445, 0.06944444444444445, 0.9444444444444444, 0.9444444444444444, 0.006944444444444444, 0.006944444444444444, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.013888888888888888, 0.027777777777777776, 0.0, 0.0, 0.0, 0.06944444444444445, 0.013888888888888888, 0.0, 0.006944444444444444, 0.006944444444444444, 0.006944444444444444, 0.08333333333333333], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Fn3_assoc.gap.json b/pfam_gap_rates/Fn3_assoc.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..5704182f127bbe33f7aeacc9527b2b18b4b31e25
--- /dev/null
+++ b/pfam_gap_rates/Fn3_assoc.gap.json
@@ -0,0 +1 @@
+{"family": "Fn3_assoc", "n_seqs": 341, "length": 104, "gap_rates": [0.5806451612903226, 0.40175953079178883, 0.2932551319648094, 0.2785923753665689, 0.9002932551319648, 0.2287390029325513, 0.41055718475073316, 0.11730205278592376, 0.07331378299120235, 0.04985337243401759, 0.03225806451612903, 0.008797653958944282, 0.008797653958944282, 0.005865102639296188, 0.005865102639296188, 0.005865102639296188, 0.005865102639296188, 0.002932551319648094, 0.002932551319648094, 0.002932551319648094, 0.005865102639296188, 0.002932551319648094, 0.9384164222873901, 0.9472140762463344, 0.9266862170087976, 0.005865102639296188, 0.9354838709677419, 0.03812316715542522, 0.9002932551319648, 0.9120234604105572, 0.9208211143695014, 0.9266862170087976, 0.9149560117302052, 0.9120234604105572, 0.8973607038123167, 0.008797653958944282, 0.0, 0.0, 0.0, 0.0, 0.002932551319648094, 0.0, 0.002932551319648094, 0.002932551319648094, 0.002932551319648094, 0.008797653958944282, 0.008797653958944282, 0.005865102639296188, 0.005865102639296188, 0.03225806451612903, 0.6656891495601173, 0.02346041055718475, 0.8269794721407625, 0.844574780058651, 0.8563049853372434, 0.8768328445747801, 0.8768328445747801, 0.8797653958944281, 0.8797653958944281, 0.8826979472140762, 0.8856304985337243, 0.8856304985337243, 0.8856304985337243, 0.8885630498533724, 0.8914956011730205, 0.9120234604105572, 0.9354838709677419, 0.9472140762463344, 0.9413489736070382, 0.9354838709677419, 0.8944281524926686, 0.8914956011730205, 0.8856304985337243, 0.8856304985337243, 0.8856304985337243, 0.8826979472140762, 0.8826979472140762, 0.8797653958944281, 0.8768328445747801, 0.8768328445747801, 0.8768328445747801, 0.8475073313782991, 0.8328445747800587, 0.8240469208211144, 0.02346041055718475, 0.02932551319648094, 0.02932551319648094, 0.02932551319648094, 0.02932551319648094, 0.03225806451612903, 0.0469208211143695, 0.05571847507331378, 0.10263929618768329, 0.24633431085043989, 0.13196480938416422, 0.15542521994134897, 0.16715542521994134, 0.1935483870967742, 0.2287390029325513, 0.2668621700879765, 0.30498533724340177, 0.41935483870967744, 0.4868035190615836, 0.5630498533724341], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/FrhB_FdhB_N.gap.json b/pfam_gap_rates/FrhB_FdhB_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..3c99e35527a77dc545a3ce19e433050b96ed8b3e
--- /dev/null
+++ b/pfam_gap_rates/FrhB_FdhB_N.gap.json
@@ -0,0 +1 @@
+{"family": "FrhB_FdhB_N", "n_seqs": 501, "length": 81, "gap_rates": [0.6726546906187625, 0.3153692614770459, 0.18163672654690619, 0.1217564870259481, 0.10179640718562874, 0.08582834331337326, 0.08183632734530938, 0.07984031936127745, 0.08782435129740519, 0.3592814371257485, 0.3413173652694611, 0.06387225548902195, 0.03992015968063872, 0.017964071856287425, 0.015968063872255488, 0.015968063872255488, 0.015968063872255488, 0.015968063872255488, 0.011976047904191617, 0.00998003992015968, 0.007984031936127744, 0.007984031936127744, 0.007984031936127744, 0.007984031936127744, 0.007984031936127744, 0.005988023952095809, 0.005988023952095809, 0.005988023952095809, 0.005988023952095809, 0.005988023952095809, 0.005988023952095809, 0.005988023952095809, 0.00998003992015968, 0.015968063872255488, 0.00998003992015968, 0.00998003992015968, 0.00998003992015968, 0.00998003992015968, 0.00998003992015968, 0.00998003992015968, 0.00998003992015968, 0.023952095808383235, 0.031936127744510975, 0.9181636726546906, 0.5189620758483033, 0.3153692614770459, 0.29740518962075846, 0.2275449101796407, 0.09580838323353294, 0.029940119760479042, 0.011976047904191617, 0.011976047904191617, 0.00998003992015968, 0.00998003992015968, 0.00998003992015968, 0.00998003992015968, 0.00998003992015968, 0.00998003992015968, 0.00998003992015968, 0.00998003992015968, 0.00998003992015968, 0.00998003992015968, 0.00998003992015968, 0.015968063872255488, 0.011976047904191617, 0.00998003992015968, 0.00998003992015968, 0.00998003992015968, 0.00998003992015968, 0.00998003992015968, 0.00998003992015968, 0.8902195608782435, 0.015968063872255488, 0.029940119760479042, 0.0658682634730539, 0.1377245508982036, 0.2714570858283433, 0.3473053892215569, 0.4171656686626746, 0.48902195608782434, 0.9101796407185628], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Fringe.gap.json b/pfam_gap_rates/Fringe.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..67cc05b33b9290d6233607dcf5060af62626c3ec
--- /dev/null
+++ b/pfam_gap_rates/Fringe.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Frizzled.gap.json b/pfam_gap_rates/Frizzled.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a9047bd6427aa281f442c7c7f6b0bc1cbab35745
--- /dev/null
+++ b/pfam_gap_rates/Frizzled.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/FtsH_ext.gap.json b/pfam_gap_rates/FtsH_ext.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a20c86bd2eddb43bd73f32d3279304a206698c80
--- /dev/null
+++ b/pfam_gap_rates/FtsH_ext.gap.json
@@ -0,0 +1 @@
+{"family": "FtsH_ext", "n_seqs": 1754, "length": 128, "gap_rates": [0.8135689851767389, 0.47206385404789053, 0.2856328392246294, 0.23090079817559864, 0.17388825541619157, 0.13169897377423034, 0.09806157354618016, 0.0661345496009122, 0.05074116305587229, 0.03876852907639681, 0.033637400228050174, 0.029646522234891677, 0.026795895096921322, 0.022234891676168756, 0.021094640820980615, 0.021094640820980615, 0.043329532497149374, 0.1402508551881414, 0.4618015963511973, 0.6505131128848347, 0.9207525655644242, 0.9407069555302167, 0.8529076396807298, 0.07411630558722919, 0.10262257696693272, 0.09064994298745724, 0.0815279361459521, 0.06556442417331813, 0.0017103762827822121, 0.0005701254275940707, 0.0005701254275940707, 0.0, 0.0, 0.0, 0.0, 0.0005701254275940707, 0.0005701254275940707, 0.0, 0.0, 0.8175598631698974, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0005701254275940707, 0.0011402508551881414, 0.0017103762827822121, 0.0017103762827822121, 0.029076396807297605, 0.04218928164196123, 0.04389965792474344, 0.046750285062713795, 0.030216647662485746, 0.7839224629418472, 0.8118586088939567, 0.8238312428734321, 0.8415051311288484, 0.8694412770809579, 0.9030786773090079, 0.9395667046750285, 0.9469783352337514, 0.9218928164196123, 0.8814139110604333, 0.8506271379703535, 0.8335233751425314, 0.8187001140250855, 0.8072976054732041, 0.758266818700114, 0.7280501710376283, 0.7291904218928165, 0.7149372862029647, 0.6949828962371721, 0.6824401368301026, 0.6237172177879133, 0.5974914481185861, 0.5290763968072976, 0.5153933865450399, 0.4361459521094641, 0.3660205245153934, 0.05986316989737742, 0.039908779931584946, 0.04161915621436716, 0.03933865450399088, 0.04161915621436716, 0.046180159635119726, 0.04561003420752566, 0.04732041049030787, 0.05131128848346636, 0.05530216647662486, 0.05815279361459521, 0.09635119726339794, 0.09920182440136831, 0.09692132269099202, 0.09806157354618016, 0.10775370581527936, 0.557012542759407, 0.5558722919042189, 0.5706955530216647, 0.3956670467502851, 0.33808437856328394, 0.3352337514253136, 0.31356898517673887, 0.2571265678449259, 0.18757126567844926, 0.20353477765108324, 0.17787913340935005, 0.18529076396807298, 0.19213226909920184, 0.2006841505131129, 0.2160775370581528, 0.22690992018244013, 0.24857468643101482, 0.27194982896237174, 0.2953249714937286, 0.31356898517673887, 0.34321550741163054, 0.39680729760547323, 0.4669327251995439, 0.5541619156214367, 0.6676168757126568, 0.806157354618016, 0.9344355758266819], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Fucose_iso_N2.gap.json b/pfam_gap_rates/Fucose_iso_N2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..9ad20cdeb0f1f0223b8da604c915e647eca1e890
--- /dev/null
+++ b/pfam_gap_rates/Fucose_iso_N2.gap.json
@@ -0,0 +1 @@
+{"family": "Fucose_iso_N2", "n_seqs": 177, "length": 184, "gap_rates": [0.23728813559322035, 0.14689265536723164, 0.14689265536723164, 0.14124293785310735, 0.11864406779661017, 0.1016949152542373, 0.1016949152542373, 0.1016949152542373, 0.1016949152542373, 0.1016949152542373, 0.1016949152542373, 0.1016949152542373, 0.1016949152542373, 0.1016949152542373, 0.1016949152542373, 0.1016949152542373, 0.1016949152542373, 0.1016949152542373, 0.1016949152542373, 0.1016949152542373, 0.1016949152542373, 0.1016949152542373, 0.1016949152542373, 0.10734463276836158, 0.10734463276836158, 0.10734463276836158, 0.10734463276836158, 0.10734463276836158, 0.096045197740113, 0.096045197740113, 0.096045197740113, 0.096045197740113, 0.096045197740113, 0.096045197740113, 0.096045197740113, 0.096045197740113, 0.096045197740113, 0.096045197740113, 0.096045197740113, 0.096045197740113, 0.096045197740113, 0.096045197740113, 0.096045197740113, 0.096045197740113, 0.11864406779661017, 0.11864406779661017, 0.1016949152542373, 0.1016949152542373, 0.096045197740113, 0.096045197740113, 0.096045197740113, 0.096045197740113, 0.096045197740113, 0.096045197740113, 0.096045197740113, 0.096045197740113, 0.096045197740113, 0.096045197740113, 0.096045197740113, 0.096045197740113, 0.1016949152542373, 0.096045197740113, 0.096045197740113, 0.096045197740113, 0.10734463276836158, 0.8870056497175142, 0.8870056497175142, 0.10734463276836158, 0.11299435028248588, 0.12429378531073447, 0.12429378531073447, 0.9152542372881356, 0.12994350282485875, 0.14124293785310735, 0.9491525423728814, 0.14689265536723164, 0.15819209039548024, 0.1694915254237288, 0.1694915254237288, 0.1638418079096045, 0.15819209039548024, 0.15254237288135594, 0.15254237288135594, 0.13559322033898305, 0.12994350282485875, 0.12994350282485875, 0.12994350282485875, 0.12994350282485875, 0.12994350282485875, 0.12994350282485875, 0.12994350282485875, 0.12994350282485875, 0.12994350282485875, 0.12994350282485875, 0.12994350282485875, 0.12994350282485875, 0.12429378531073447, 0.12429378531073447, 0.12429378531073447, 0.12429378531073447, 0.12429378531073447, 0.12429378531073447, 0.12429378531073447, 0.12429378531073447, 0.12429378531073447, 0.12429378531073447, 0.15254237288135594, 0.15254237288135594, 0.15254237288135594, 0.15254237288135594, 0.15254237288135594, 0.15254237288135594, 0.3898305084745763, 0.15254237288135594, 0.15819209039548024, 0.1638418079096045, 0.1638418079096045, 0.1638418079096045, 0.1694915254237288, 0.1694915254237288, 0.1694915254237288, 0.14124293785310735, 0.14124293785310735, 0.14124293785310735, 0.14124293785310735, 0.1016949152542373, 0.06779661016949153, 0.06779661016949153, 0.06779661016949153, 0.06779661016949153, 0.06779661016949153, 0.06779661016949153, 0.06779661016949153, 0.06779661016949153, 0.06779661016949153, 0.06779661016949153, 0.06779661016949153, 0.06779661016949153, 0.06779661016949153, 0.06779661016949153, 0.06779661016949153, 0.06779661016949153, 0.06779661016949153, 0.06779661016949153, 0.06779661016949153, 0.06779661016949153, 0.06779661016949153, 0.06779661016949153, 0.062146892655367235, 0.062146892655367235, 0.062146892655367235, 0.062146892655367235, 0.062146892655367235, 0.062146892655367235, 0.062146892655367235, 0.062146892655367235, 0.062146892655367235, 0.062146892655367235, 0.062146892655367235, 0.062146892655367235, 0.062146892655367235, 0.062146892655367235, 0.062146892655367235, 0.062146892655367235, 0.062146892655367235, 0.062146892655367235, 0.062146892655367235, 0.062146892655367235, 0.062146892655367235, 0.062146892655367235, 0.062146892655367235, 0.062146892655367235, 0.062146892655367235, 0.062146892655367235, 0.062146892655367235, 0.062146892655367235, 0.062146892655367235, 0.062146892655367235, 0.062146892655367235, 0.0847457627118644, 0.096045197740113, 0.096045197740113, 0.11299435028248588, 0.23163841807909605], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Fucosidase_C.gap.json b/pfam_gap_rates/Fucosidase_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..1f786cd941f0d4f91d670a8f51c300fe6622e233
--- /dev/null
+++ b/pfam_gap_rates/Fucosidase_C.gap.json
@@ -0,0 +1 @@
+{"family": "Fucosidase_C", "n_seqs": 338, "length": 103, "gap_rates": [0.591715976331361, 0.5562130177514792, 0.5295857988165681, 0.5088757396449705, 0.46153846153846156, 0.32840236686390534, 0.16568047337278108, 0.09763313609467456, 0.07692307692307693, 0.047337278106508875, 0.03254437869822485, 0.026627218934911243, 0.023668639053254437, 0.023668639053254437, 0.6420118343195266, 0.9408284023668639, 0.5857988165680473, 0.03550295857988166, 0.014792899408284023, 0.9112426035502958, 0.9497041420118343, 0.9349112426035503, 0.8994082840236687, 0.011834319526627219, 0.011834319526627219, 0.011834319526627219, 0.011834319526627219, 0.011834319526627219, 0.011834319526627219, 0.008875739644970414, 0.014792899408284023, 0.011834319526627219, 0.011834319526627219, 0.01775147928994083, 0.014792899408284023, 0.05029585798816568, 0.8727810650887574, 0.03550295857988166, 0.005917159763313609, 0.011834319526627219, 0.005917159763313609, 0.0029585798816568047, 0.0029585798816568047, 0.005917159763313609, 0.2869822485207101, 0.22781065088757396, 0.23372781065088757, 0.17159763313609466, 0.1863905325443787, 0.27218934911242604, 0.20414201183431951, 0.8017751479289941, 0.8136094674556213, 0.7958579881656804, 0.14201183431952663, 0.05621301775147929, 0.005917159763313609, 0.005917159763313609, 0.011834319526627219, 0.011834319526627219, 0.011834319526627219, 0.011834319526627219, 0.026627218934911243, 0.8431952662721893, 0.01775147928994083, 0.09763313609467456, 0.023668639053254437, 0.020710059171597635, 0.020710059171597635, 0.020710059171597635, 0.020710059171597635, 0.020710059171597635, 0.9142011834319527, 0.9023668639053254, 0.026627218934911243, 0.023668639053254437, 0.7337278106508875, 0.023668639053254437, 0.023668639053254437, 0.023668639053254437, 0.023668639053254437, 0.023668639053254437, 0.023668639053254437, 0.023668639053254437, 0.023668639053254437, 0.3136094674556213, 0.3905325443786982, 0.35502958579881655, 0.2958579881656805, 0.14497041420118342, 0.12130177514792899, 0.16272189349112426, 0.17751479289940827, 0.25443786982248523, 0.17751479289940827, 0.17159763313609466, 0.16863905325443787, 0.16863905325443787, 0.17455621301775148, 0.1804733727810651, 0.20414201183431951, 0.23076923076923078, 0.6420118343195266], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/GDE_C.gap.json b/pfam_gap_rates/GDE_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b411867777b7d32c2dad68764bc13076d12f2b31
--- /dev/null
+++ b/pfam_gap_rates/GDE_C.gap.json
@@ -0,0 +1 @@
+{"family": "GDE_C", "n_seqs": 868, "length": 529, "gap_rates": [0.8122119815668203, 0.7246543778801844, 0.7108294930875576, 0.6970046082949308, 0.6820276497695853, 0.6774193548387096, 0.6728110599078341, 0.6647465437788018, 0.6647465437788018, 0.6589861751152074, 0.7476958525345622, 0.7442396313364056, 0.7350230414746544, 0.7350230414746544, 0.6105990783410138, 0.5460829493087558, 0.3870967741935484, 0.35253456221198154, 0.3052995391705069, 0.2799539170506912, 0.2672811059907834, 0.2569124423963134, 0.2350230414746544, 0.1578341013824885, 0.14746543778801843, 0.14516129032258066, 0.14400921658986174, 0.14400921658986174, 0.14400921658986174, 0.14170506912442396, 0.14400921658986174, 0.7373271889400922, 0.7373271889400922, 0.9389400921658986, 0.7373271889400922, 0.7373271889400922, 0.14285714285714285, 0.5230414746543779, 0.1382488479262673, 0.1382488479262673, 0.1382488479262673, 0.1382488479262673, 0.1382488479262673, 0.1359447004608295, 0.14631336405529954, 0.9377880184331797, 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\ No newline at end of file
diff --git a/pfam_gap_rates/GDE_N_bis.gap.json b/pfam_gap_rates/GDE_N_bis.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..4fccf1e2592482ff5a443dc06b605582b6a5fa78
--- /dev/null
+++ b/pfam_gap_rates/GDE_N_bis.gap.json
@@ -0,0 +1 @@
+{"family": "GDE_N_bis", "n_seqs": 260, "length": 227, "gap_rates": [0.3346153846153846, 0.2692307692307692, 0.22692307692307692, 0.17692307692307693, 0.1076923076923077, 0.1, 0.07692307692307693, 0.05, 0.046153846153846156, 0.04230769230769231, 0.04230769230769231, 0.04230769230769231, 0.04230769230769231, 0.04230769230769231, 0.04230769230769231, 0.04230769230769231, 0.04230769230769231, 0.8769230769230769, 0.9153846153846154, 0.9, 0.8192307692307692, 0.4846153846153846, 0.4230769230769231, 0.17307692307692307, 0.038461538461538464, 0.03461538461538462, 0.03461538461538462, 0.03461538461538462, 0.03461538461538462, 0.03076923076923077, 0.03076923076923077, 0.03076923076923077, 0.03076923076923077, 0.03076923076923077, 0.03076923076923077, 0.03076923076923077, 0.026923076923076925, 0.026923076923076925, 0.023076923076923078, 0.023076923076923078, 0.023076923076923078, 0.023076923076923078, 0.023076923076923078, 0.023076923076923078, 0.023076923076923078, 0.023076923076923078, 0.023076923076923078, 0.026923076923076925, 0.026923076923076925, 0.023076923076923078, 0.03461538461538462, 0.023076923076923078, 0.019230769230769232, 0.06153846153846154, 0.026923076923076925, 0.023076923076923078, 0.023076923076923078, 0.023076923076923078, 0.026923076923076925, 0.026923076923076925, 0.03461538461538462, 0.5423076923076923, 0.06153846153846154, 0.038461538461538464, 0.026923076923076925, 0.026923076923076925, 0.023076923076923078, 0.023076923076923078, 0.03076923076923077, 0.03076923076923077, 0.05, 0.05384615384615385, 0.11538461538461539, 0.10384615384615385, 0.10384615384615385, 0.3576923076923077, 0.5, 0.5038461538461538, 0.4653846153846154, 0.8961538461538462, 0.9461538461538461, 0.5846153846153846, 0.08076923076923077, 0.038461538461538464, 0.026923076923076925, 0.019230769230769232, 0.019230769230769232, 0.015384615384615385, 0.011538461538461539, 0.011538461538461539, 0.011538461538461539, 0.011538461538461539, 0.011538461538461539, 0.011538461538461539, 0.011538461538461539, 0.011538461538461539, 0.5653846153846154, 0.015384615384615385, 0.011538461538461539, 0.8192307692307692, 0.05, 0.05384615384615385, 0.015384615384615385, 0.011538461538461539, 0.011538461538461539, 0.011538461538461539, 0.015384615384615385, 0.015384615384615385, 0.019230769230769232, 0.015384615384615385, 0.015384615384615385, 0.015384615384615385, 0.015384615384615385, 0.015384615384615385, 0.015384615384615385, 0.011538461538461539, 0.011538461538461539, 0.011538461538461539, 0.015384615384615385, 0.015384615384615385, 0.011538461538461539, 0.011538461538461539, 0.011538461538461539, 0.015384615384615385, 0.015384615384615385, 0.011538461538461539, 0.011538461538461539, 0.011538461538461539, 0.011538461538461539, 0.011538461538461539, 0.011538461538461539, 0.011538461538461539, 0.011538461538461539, 0.011538461538461539, 0.011538461538461539, 0.011538461538461539, 0.011538461538461539, 0.057692307692307696, 0.8769230769230769, 0.057692307692307696, 0.9, 0.1, 0.1, 0.09230769230769231, 0.12307692307692308, 0.1, 0.9423076923076923, 0.1346153846153846, 0.09230769230769231, 0.08846153846153847, 0.09615384615384616, 0.08846153846153847, 0.9038461538461539, 0.9153846153846154, 0.9192307692307692, 0.9346153846153846, 0.9384615384615385, 0.9384615384615385, 0.9384615384615385, 0.95, 0.95, 0.9384615384615385, 0.9384615384615385, 0.9346153846153846, 0.9192307692307692, 0.9153846153846154, 0.9153846153846154, 0.8961538461538462, 0.05384615384615385, 0.06153846153846154, 0.05384615384615385, 0.05, 0.05, 0.046153846153846156, 0.046153846153846156, 0.05, 0.05384615384615385, 0.05, 0.07307692307692308, 0.06538461538461539, 0.2230769230769231, 0.10384615384615385, 0.07307692307692308, 0.07307692307692308, 0.07692307692307693, 0.05384615384615385, 0.057692307692307696, 0.05384615384615385, 0.13076923076923078, 0.1, 0.09230769230769231, 0.07307692307692308, 0.09230769230769231, 0.09615384615384616, 0.8076923076923077, 0.07307692307692308, 0.06923076923076923, 0.08461538461538462, 0.16538461538461538, 0.12307692307692308, 0.8, 0.8769230769230769, 0.9153846153846154, 0.8576923076923076, 0.7192307692307692, 0.11153846153846154, 0.06153846153846154, 0.06153846153846154, 0.06153846153846154, 0.06153846153846154, 0.06153846153846154, 0.06153846153846154, 0.06153846153846154, 0.06153846153846154, 0.06153846153846154, 0.06153846153846154, 0.06538461538461539, 0.06538461538461539, 0.07307692307692308, 0.07692307692307693, 0.09230769230769231, 0.09615384615384616, 0.10384615384615385, 0.10384615384615385, 0.17692307692307693, 0.35, 0.8384615384615385], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/GD_AH_C.gap.json b/pfam_gap_rates/GD_AH_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..3387cc264b85c9984324929418298083e48af509
--- /dev/null
+++ b/pfam_gap_rates/GD_AH_C.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/GED.gap.json b/pfam_gap_rates/GED.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..22419be3df5dd6ef2a0585453379d0b7733d1cd6
--- /dev/null
+++ b/pfam_gap_rates/GED.gap.json
@@ -0,0 +1 @@
+{"family": "GED", "n_seqs": 1215, "length": 97, "gap_rates": [0.7720164609053498, 0.5432098765432098, 0.3308641975308642, 0.2271604938271605, 0.17860082304526748, 0.15720164609053497, 0.14074074074074075, 0.102880658436214, 0.07736625514403292, 0.060082304526748974, 0.044444444444444446, 0.0345679012345679, 0.031275720164609055, 0.027160493827160494, 0.024691358024691357, 0.024691358024691357, 0.024691358024691357, 0.023045267489711935, 0.019753086419753086, 0.019753086419753086, 0.019753086419753086, 0.01728395061728395, 0.014814814814814815, 0.01316872427983539, 0.01316872427983539, 0.012345679012345678, 0.012345679012345678, 0.011522633744855968, 0.012345679012345678, 0.012345679012345678, 0.01316872427983539, 0.01316872427983539, 0.011522633744855968, 0.011522633744855968, 0.009876543209876543, 0.00905349794238683, 0.010699588477366255, 0.009876543209876543, 0.010699588477366255, 0.014814814814814815, 0.01646090534979424, 0.01646090534979424, 0.01646090534979424, 0.01728395061728395, 0.015637860082304528, 0.015637860082304528, 0.019753086419753086, 0.01646090534979424, 0.01728395061728395, 0.01728395061728395, 0.01728395061728395, 0.015637860082304528, 0.01728395061728395, 0.01646090534979424, 0.02139917695473251, 0.023868312757201648, 0.05185185185185185, 0.6839506172839506, 0.9078189300411522, 0.922633744855967, 0.8864197530864197, 0.6773662551440329, 0.03209876543209877, 0.027983539094650206, 0.027983539094650206, 0.02551440329218107, 0.023868312757201648, 0.023868312757201648, 0.023868312757201648, 0.02551440329218107, 0.02633744855967078, 0.027160493827160494, 0.027983539094650206, 0.02880658436213992, 0.02962962962962963, 0.02880658436213992, 0.03209876543209877, 0.03292181069958848, 0.03374485596707819, 0.0345679012345679, 0.03539094650205761, 0.03621399176954732, 0.03621399176954732, 0.037037037037037035, 0.03786008230452675, 0.043621399176954734, 0.04609053497942387, 0.050205761316872426, 0.05432098765432099, 0.102880658436214, 0.10699588477366255, 0.11358024691358025, 0.1242798353909465, 0.12921810699588476, 0.18518518518518517, 0.27983539094650206, 0.5794238683127572], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/GHMP_kinases_C.gap.json b/pfam_gap_rates/GHMP_kinases_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..901ddda004c1e92698d17a71ba72221a77875f0b
--- /dev/null
+++ b/pfam_gap_rates/GHMP_kinases_C.gap.json
@@ -0,0 +1 @@
+{"family": "GHMP_kinases_C", "n_seqs": 4958, "length": 90, "gap_rates": [0.8691004437273094, 0.6744655102864058, 0.5669624848729327, 0.49616780960064544, 0.46248487293263413, 0.445542557482856, 0.41670028237192414, 0.37353771682129894, 0.34630899556272693, 0.2977006857603873, 0.25675675675675674, 0.23376361436062928, 0.2144009681323114, 0.2029043969342477, 0.19281968535699878, 0.1845502218636547, 0.1700282371924163, 0.15994352561516742, 0.3336022589753933, 0.3204921339249697, 0.3118192819685357, 0.3172650262202501, 0.345703912868092, 0.6661960467930618, 0.9275917708753529, 0.8307785397337636, 0.5256151674062122, 0.4227511093182735, 0.18132311415893507, 0.6012505042355789, 0.5570794675272287, 0.03691004437273094, 0.022388059701492536, 0.020572811617587738, 0.017749092375958047, 0.015127067365873336, 0.010891488503428802, 0.00826946349334409, 0.007866075030254134, 0.00645421540943929, 0.004840661557079467, 0.003227107704719645, 0.0030254134731746672, 0.0024203307785397336, 0.002016942315449778, 0.002016942315449778, 0.003227107704719645, 0.8519564340459863, 0.00927793465106898, 0.004437273093989512, 0.004033884630899556, 0.012303348124243647, 0.8945139169019766, 0.18071803146430013, 0.060306575231948364, 0.003227107704719645, 0.0008067769261799112, 0.0006050826946349334, 0.0, 0.0, 0.0, 0.0002016942315449778, 0.4943525615167406, 0.4937474788221057, 0.0004033884630899556, 0.001008471157724889, 0.0018152480839048004, 0.0030254134731746672, 0.004033884630899556, 0.004840661557079467, 0.006857603872529245, 0.009681323114158934, 0.4461476401774909, 0.08652682533279549, 0.07039128680919726, 0.08874546187979024, 0.1054860830980234, 0.14925373134328357, 0.15469947559499797, 0.16659943525615167, 0.17244856797095603, 0.19382815651472368, 0.22509076240419523, 0.26119402985074625, 0.291246470350948, 0.3892698668818072, 0.4800322710770472, 0.5687777329568374, 0.6490520371117386, 0.8210972166196047], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/GLTSCR1.gap.json b/pfam_gap_rates/GLTSCR1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..465fa0f77b07e10b407a84aab90f9930ada53e96
--- /dev/null
+++ b/pfam_gap_rates/GLTSCR1.gap.json
@@ -0,0 +1 @@
+{"family": "GLTSCR1", "n_seqs": 175, "length": 123, "gap_rates": [0.3657142857142857, 0.21142857142857144, 0.13142857142857142, 0.11428571428571428, 0.09142857142857143, 0.09142857142857143, 0.09142857142857143, 0.08, 0.06857142857142857, 0.17714285714285713, 0.08, 0.11428571428571428, 0.05142857142857143, 0.05142857142857143, 0.05142857142857143, 0.05142857142857143, 0.05142857142857143, 0.05142857142857143, 0.045714285714285714, 0.045714285714285714, 0.045714285714285714, 0.04, 0.017142857142857144, 0.011428571428571429, 0.011428571428571429, 0.011428571428571429, 0.011428571428571429, 0.011428571428571429, 0.011428571428571429, 0.011428571428571429, 0.011428571428571429, 0.011428571428571429, 0.011428571428571429, 0.011428571428571429, 0.011428571428571429, 0.011428571428571429, 0.011428571428571429, 0.011428571428571429, 0.017142857142857144, 0.022857142857142857, 0.022857142857142857, 0.12, 0.09142857142857143, 0.6114285714285714, 0.6285714285714286, 0.6342857142857142, 0.64, 0.6457142857142857, 0.6742857142857143, 0.7257142857142858, 0.8914285714285715, 0.9257142857142857, 0.9428571428571428, 0.9314285714285714, 0.9142857142857143, 0.8628571428571429, 0.7085714285714285, 0.6628571428571428, 0.64, 0.64, 0.6285714285714286, 0.6228571428571429, 0.6114285714285714, 0.06285714285714286, 0.05142857142857143, 0.05142857142857143, 0.045714285714285714, 0.04, 0.04, 0.04, 0.04, 0.04, 0.04, 0.03428571428571429, 0.03428571428571429, 0.03428571428571429, 0.03428571428571429, 0.03428571428571429, 0.04, 0.04, 0.05142857142857143, 0.05714285714285714, 0.05714285714285714, 0.05714285714285714, 0.06285714285714286, 0.06285714285714286, 0.06285714285714286, 0.06285714285714286, 0.06285714285714286, 0.06285714285714286, 0.06857142857142857, 0.07428571428571429, 0.07428571428571429, 0.08, 0.9314285714285714, 0.15428571428571428, 0.13714285714285715, 0.10857142857142857, 0.10857142857142857, 0.10857142857142857, 0.09714285714285714, 0.09714285714285714, 0.09142857142857143, 0.09142857142857143, 0.08571428571428572, 0.08571428571428572, 0.08571428571428572, 0.08571428571428572, 0.09142857142857143, 0.09714285714285714, 0.09714285714285714, 0.09714285714285714, 0.09714285714285714, 0.10857142857142857, 0.11428571428571428, 0.12, 0.12571428571428572, 0.13714285714285715, 0.15428571428571428, 0.17714285714285713, 0.21714285714285714, 0.2742857142857143, 0.8057142857142857], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/GPI.gap.json b/pfam_gap_rates/GPI.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..8367974b08db1fee68ef4ffdbeeafc5fe33c8e87
--- /dev/null
+++ b/pfam_gap_rates/GPI.gap.json
@@ -0,0 +1 @@
+{"family": "GPI", "n_seqs": 177, "length": 201, "gap_rates": [0.903954802259887, 0.7231638418079096, 0.6779661016949152, 0.6384180790960452, 0.6214689265536724, 0.5988700564971752, 0.5932203389830508, 0.5819209039548022, 0.576271186440678, 0.576271186440678, 0.5706214689265536, 0.5706214689265536, 0.5706214689265536, 0.5706214689265536, 0.6271186440677966, 0.6214689265536724, 0.6214689265536724, 0.6101694915254238, 0.6384180790960452, 0.8305084745762712, 0.7231638418079096, 0.7005649717514124, 0.632768361581921, 0.5649717514124294, 0.4632768361581921, 0.4124293785310734, 0.3728813559322034, 0.3672316384180791, 0.3672316384180791, 0.3502824858757062, 0.3446327683615819, 0.3446327683615819, 0.3446327683615819, 0.3446327683615819, 0.3389830508474576, 0.3559322033898305, 0.3615819209039548, 0.3559322033898305, 0.3502824858757062, 0.3502824858757062, 0.3615819209039548, 0.3559322033898305, 0.3615819209039548, 0.6836158192090396, 0.6610169491525424, 0.615819209039548, 0.6045197740112994, 0.5706214689265536, 0.5423728813559322, 0.2937853107344633, 0.23163841807909605, 0.20903954802259886, 0.12994350282485875, 0.12994350282485875, 0.12994350282485875, 0.12994350282485875, 0.12994350282485875, 0.12994350282485875, 0.12994350282485875, 0.12994350282485875, 0.12994350282485875, 0.12994350282485875, 0.12994350282485875, 0.12994350282485875, 0.12994350282485875, 0.12994350282485875, 0.12994350282485875, 0.12994350282485875, 0.1016949152542373, 0.096045197740113, 0.0903954802259887, 0.0847457627118644, 0.0903954802259887, 0.0903954802259887, 0.0903954802259887, 0.096045197740113, 0.7288135593220338, 0.7062146892655368, 0.8192090395480226, 0.6949152542372882, 0.6610169491525424, 0.3333333333333333, 0.096045197740113, 0.04519774011299435, 0.02824858757062147, 0.01694915254237288, 0.01694915254237288, 0.01694915254237288, 0.01694915254237288, 0.01694915254237288, 0.01694915254237288, 0.01694915254237288, 0.01694915254237288, 0.01694915254237288, 0.011299435028248588, 0.011299435028248588, 0.011299435028248588, 0.011299435028248588, 0.011299435028248588, 0.011299435028248588, 0.005649717514124294, 0.847457627118644, 0.005649717514124294, 0.005649717514124294, 0.011299435028248588, 0.8135593220338984, 0.8587570621468926, 0.8700564971751412, 0.8757062146892656, 0.864406779661017, 0.847457627118644, 0.7796610169491526, 0.480225988700565, 0.4689265536723164, 0.4632768361581921, 0.3502824858757062, 0.05649717514124294, 0.01694915254237288, 0.022598870056497175, 0.022598870056497175, 0.011299435028248588, 0.005649717514124294, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.005649717514124294, 0.0, 0.0, 0.0, 0.0, 0.8870056497175142, 0.0, 0.0, 0.0, 0.005649717514124294, 0.005649717514124294, 0.005649717514124294, 0.005649717514124294, 0.005649717514124294, 0.005649717514124294, 0.011299435028248588, 0.022598870056497175, 0.062146892655367235, 0.062146892655367235, 0.07909604519774012, 0.9265536723163842, 0.9265536723163842, 0.9265536723163842, 0.9265536723163842, 0.9265536723163842, 0.1016949152542373, 0.9378531073446328, 0.9378531073446328, 0.9378531073446328, 0.9378531073446328, 0.9378531073446328, 0.1016949152542373, 0.1016949152542373, 0.11299435028248588, 0.11299435028248588, 0.12429378531073447, 0.12429378531073447, 0.13559322033898305, 0.1864406779661017, 0.21468926553672316, 0.1864406779661017, 0.1638418079096045, 0.1638418079096045, 0.1638418079096045, 0.1751412429378531, 0.1751412429378531, 0.1807909604519774, 0.21468926553672316, 0.2824858757062147, 0.2711864406779661, 0.2768361581920904, 0.3389830508474576, 0.4124293785310734, 0.5310734463276836, 0.5706214689265536, 0.6214689265536724, 0.6666666666666666, 0.7005649717514124, 0.768361581920904, 0.8248587570621468, 0.8700564971751412, 0.8813559322033898, 0.9322033898305084], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/GPP34.gap.json b/pfam_gap_rates/GPP34.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d6ffa8a52677f4736e892ea60051c0fd6add3b55
--- /dev/null
+++ b/pfam_gap_rates/GPP34.gap.json
@@ -0,0 +1 @@
+{"family": "GPP34", "n_seqs": 469, "length": 250, "gap_rates": [0.27078891257995735, 0.1791044776119403, 0.12153518123667377, 0.11727078891257996, 0.1279317697228145, 0.10874200426439233, 0.10660980810234541, 0.1023454157782516, 0.1023454157782516, 0.1023454157782516, 0.10660980810234541, 0.11513859275053305, 0.1044776119402985, 0.1023454157782516, 0.07462686567164178, 0.0767590618336887, 0.07249466950959488, 0.9424307036247335, 0.16844349680170576, 0.09168443496801706, 0.08315565031982942, 0.07462686567164178, 0.10874200426439233, 0.08742004264392324, 0.07249466950959488, 0.06823027718550106, 0.05970149253731343, 0.05543710021321962, 0.053304904051172705, 0.053304904051172705, 0.053304904051172705, 0.05543710021321962, 0.046908315565031986, 0.046908315565031986, 0.04477611940298507, 0.04477611940298507, 0.04477611940298507, 0.04477611940298507, 0.04477611940298507, 0.04477611940298507, 0.04477611940298507, 0.04477611940298507, 0.04477611940298507, 0.04477611940298507, 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\ No newline at end of file
diff --git a/pfam_gap_rates/GPW_gp25.gap.json b/pfam_gap_rates/GPW_gp25.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..648d4d291f637f69fff7747dffb283547685db34
--- /dev/null
+++ b/pfam_gap_rates/GPW_gp25.gap.json
@@ -0,0 +1 @@
+{"family": "GPW_gp25", "n_seqs": 618, "length": 108, "gap_rates": [0.6213592233009708, 0.37540453074433655, 0.21035598705501618, 0.09061488673139159, 0.038834951456310676, 0.02912621359223301, 0.022653721682847898, 0.014563106796116505, 0.009708737864077669, 0.008090614886731391, 0.0048543689320388345, 0.0048543689320388345, 0.0048543689320388345, 0.0048543689320388345, 0.0048543689320388345, 0.0048543689320388345, 0.7200647249190939, 0.7233009708737864, 0.7297734627831716, 0.7362459546925566, 0.7588996763754046, 0.843042071197411, 0.7491909385113269, 0.7313915857605178, 0.7265372168284789, 0.7216828478964401, 0.7200647249190939, 0.0048543689320388345, 0.0048543689320388345, 0.006472491909385114, 0.0048543689320388345, 0.0048543689320388345, 0.0048543689320388345, 0.003236245954692557, 0.003236245954692557, 0.003236245954692557, 0.003236245954692557, 0.003236245954692557, 0.0016181229773462784, 0.0016181229773462784, 0.0048543689320388345, 0.0048543689320388345, 0.0048543689320388345, 0.0048543689320388345, 0.003236245954692557, 0.003236245954692557, 0.0016181229773462784, 0.0016181229773462784, 0.0, 0.0, 0.012944983818770227, 0.4627831715210356, 0.16828478964401294, 0.009708737864077669, 0.003236245954692557, 0.0016181229773462784, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.003236245954692557, 0.9449838187702265, 0.0, 0.0, 0.0016181229773462784, 0.0016181229773462784, 0.0016181229773462784, 0.0048543689320388345, 0.006472491909385114, 0.006472491909385114, 0.006472491909385114, 0.006472491909385114, 0.006472491909385114, 0.16990291262135923, 0.16990291262135923, 0.1715210355987055, 0.2022653721682848, 0.24757281553398058, 0.25728155339805825, 0.9093851132686084, 0.8527508090614887, 0.7038834951456311, 0.6035598705501618, 0.517799352750809, 0.08737864077669903, 0.07928802588996764, 0.07928802588996764, 0.07766990291262135, 0.08090614886731391, 0.08576051779935275, 0.09223300970873786, 0.10194174757281553, 0.11326860841423948, 0.11974110032362459, 0.15048543689320387, 0.20064724919093851, 0.24433656957928804, 0.3220064724919094, 0.4336569579288026, 0.5647249190938511], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/GRAS.gap.json b/pfam_gap_rates/GRAS.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..9e48e735cbe8caa1f7b8abbb666c8b018caac610
--- /dev/null
+++ b/pfam_gap_rates/GRAS.gap.json
@@ -0,0 +1 @@
+{"family": "GRAS", "n_seqs": 1483, "length": 420, "gap_rates": [0.6446392447741065, 0.33243425488873907, 0.20364126770060686, 0.18543492919757248, 0.1820633850303439, 0.18138907619689817, 0.17734322319622386, 0.17599460552933244, 0.17329737019554955, 0.1712744436952124, 0.17734322319622386, 0.1706001348617667, 0.1706001348617667, 0.17329737019554955, 0.18408631153068106, 0.16925151719487525, 0.16790289952798382, 0.16790289952798382, 0.1665542818610924, 0.16183412002697237, 0.16183412002697237, 0.1604855023600809, 0.1604855023600809, 0.1598111935266352, 0.1598111935266352, 0.1598111935266352, 0.15913688469318948, 0.1598111935266352, 0.1598111935266352, 0.15913688469318948, 0.9285232636547539, 0.15913688469318948, 0.15846257585974377, 0.15778826702629806, 0.1557653405259609, 0.15441672285906946, 0.9399865138233311, 0.15509103169251517, 0.153068105192178, 0.15037086985839515, 0.15037086985839515, 0.1490222521915037, 0.14834794335805798, 0.14834794335805798, 0.14969656102494944, 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\ No newline at end of file
diff --git a/pfam_gap_rates/GRDA.gap.json b/pfam_gap_rates/GRDA.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..2cacd325f2a6e4968b9acbfe307af0baf63735dd
--- /dev/null
+++ b/pfam_gap_rates/GRDA.gap.json
@@ -0,0 +1 @@
+{"family": "GRDA", "n_seqs": 160, "length": 146, "gap_rates": [0.4875, 0.44375, 0.43125, 0.43125, 0.43125, 0.43125, 0.43125, 0.43125, 0.43125, 0.43125, 0.43125, 0.43125, 0.43125, 0.43125, 0.43125, 0.43125, 0.43125, 0.425, 0.425, 0.425, 0.425, 0.425, 0.425, 0.425, 0.425, 0.425, 0.425, 0.425, 0.425, 0.425, 0.425, 0.425, 0.425, 0.425, 0.425, 0.425, 0.425, 0.425, 0.425, 0.425, 0.81875, 0.81875, 0.81875, 0.81875, 0.81875, 0.43125, 0.43125, 0.40625, 0.40625, 0.40625, 0.40625, 0.40625, 0.40625, 0.40625, 0.40625, 0.40625, 0.39375, 0.39375, 0.39375, 0.39375, 0.39375, 0.39375, 0.39375, 0.39375, 0.39375, 0.39375, 0.39375, 0.39375, 0.39375, 0.39375, 0.39375, 0.39375, 0.39375, 0.39375, 0.39375, 0.39375, 0.39375, 0.39375, 0.39375, 0.39375, 0.39375, 0.39375, 0.39375, 0.39375, 0.39375, 0.39375, 0.39375, 0.39375, 0.39375, 0.39375, 0.39375, 0.39375, 0.39375, 0.39375, 0.39375, 0.39375, 0.39375, 0.39375, 0.39375, 0.39375, 0.39375, 0.39375, 0.39375, 0.39375, 0.39375, 0.39375, 0.39375, 0.39375, 0.39375, 0.39375, 0.41875, 0.41875, 0.39375, 0.39375, 0.39375, 0.39375, 0.39375, 0.39375, 0.39375, 0.39375, 0.39375, 0.39375, 0.39375, 0.39375, 0.39375, 0.39375, 0.39375, 0.39375, 0.39375, 0.39375, 0.39375, 0.39375, 0.39375, 0.39375, 0.39375, 0.39375, 0.39375, 0.39375, 0.39375, 0.39375, 0.4, 0.4, 0.4, 0.4, 0.40625, 0.40625], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/GST_C_6.gap.json b/pfam_gap_rates/GST_C_6.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..2bb1c38559f0a1d1440a63101683a1f9f2fbb8d2
--- /dev/null
+++ b/pfam_gap_rates/GST_C_6.gap.json
@@ -0,0 +1 @@
+{"family": "GST_C_6", "n_seqs": 688, "length": 70, "gap_rates": [0.6511627906976745, 0.2805232558139535, 0.14680232558139536, 0.10610465116279069, 0.07267441860465117, 0.06976744186046512, 0.06686046511627906, 0.056686046511627904, 0.056686046511627904, 0.055232558139534885, 0.050872093023255814, 0.04796511627906977, 0.9462209302325582, 0.040697674418604654, 0.040697674418604654, 0.036337209302325583, 0.0377906976744186, 0.02616279069767442, 0.024709302325581394, 0.02180232558139535, 0.01744186046511628, 0.7950581395348837, 0.020348837209302327, 0.02180232558139535, 0.005813953488372093, 0.007267441860465116, 0.0029069767441860465, 0.0, 0.00436046511627907, 0.00436046511627907, 0.00436046511627907, 0.00436046511627907, 0.00436046511627907, 0.00436046511627907, 0.00436046511627907, 0.00436046511627907, 0.00436046511627907, 0.00436046511627907, 0.00436046511627907, 0.030523255813953487, 0.015988372093023256, 0.0188953488372093, 0.055232558139534885, 0.08575581395348837, 0.04215116279069767, 0.030523255813953487, 0.03924418604651163, 0.8575581395348837, 0.9447674418604651, 0.7819767441860465, 0.28488372093023256, 0.029069767441860465, 0.030523255813953487, 0.030523255813953487, 0.03197674418604651, 0.03197674418604651, 0.03197674418604651, 0.622093023255814, 0.036337209302325583, 0.0377906976744186, 0.0377906976744186, 0.0377906976744186, 0.040697674418604654, 0.046511627906976744, 0.04941860465116279, 0.05232558139534884, 0.059593023255813955, 0.06976744186046512, 0.11773255813953488, 0.2616279069767442], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/GST_N.gap.json b/pfam_gap_rates/GST_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e85cdc6577bd4bd404b5114e121cdaa2043a15bd
--- /dev/null
+++ b/pfam_gap_rates/GST_N.gap.json
@@ -0,0 +1 @@
+{"family": "GST_N", "n_seqs": 5000, "length": 87, "gap_rates": [0.936, 0.6556, 0.3836, 0.2962, 0.2272, 0.189, 0.1732, 0.1602, 0.147, 0.1368, 0.5128, 0.279, 0.0944, 0.0912, 0.0796, 0.0716, 0.0662, 0.0578, 0.0526, 0.0466, 0.0438, 0.036, 0.0336, 0.0322, 0.0312, 0.0302, 0.0284, 0.027, 0.0264, 0.0266, 0.0252, 0.0254, 0.0302, 0.0244, 0.0624, 0.3052, 0.2704, 0.2376, 0.1572, 0.1384, 0.1214, 0.0924, 0.8362, 0.0236, 0.0182, 0.0162, 0.0132, 0.011, 0.0094, 0.0068, 0.0056, 0.0044, 0.8888, 0.9462, 0.9156, 0.7572, 0.0042, 0.004, 0.0046, 0.008, 0.0062, 0.0062, 0.0058, 0.006, 0.0062, 0.7682, 0.8492, 0.9172, 0.8974, 0.8032, 0.6438, 0.0072, 0.0076, 0.008, 0.0084, 0.01, 0.0128, 0.0158, 0.0176, 0.0192, 0.0208, 0.0224, 0.0304, 0.0386, 0.0514, 0.1372, 0.5744], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/GST_N_4.gap.json b/pfam_gap_rates/GST_N_4.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..0cda10be0071f2708f9819a819f238cbe683081d
--- /dev/null
+++ b/pfam_gap_rates/GST_N_4.gap.json
@@ -0,0 +1 @@
+{"family": "GST_N_4", "n_seqs": 455, "length": 113, "gap_rates": [0.2725274725274725, 0.16703296703296702, 0.12087912087912088, 0.10989010989010989, 0.1054945054945055, 0.0945054945054945, 0.08791208791208792, 0.08571428571428572, 0.08131868131868132, 0.08131868131868132, 0.07692307692307693, 0.06593406593406594, 0.06373626373626373, 0.06373626373626373, 0.06153846153846154, 0.05934065934065934, 0.05714285714285714, 0.054945054945054944, 0.07252747252747253, 0.05714285714285714, 0.1824175824175824, 0.07472527472527472, 0.05934065934065934, 0.12307692307692308, 0.9318681318681319, 0.5428571428571428, 0.8461538461538461, 0.6307692307692307, 0.3252747252747253, 0.2857142857142857, 0.024175824175824177, 0.013186813186813187, 0.008791208791208791, 0.004395604395604396, 0.004395604395604396, 0.002197802197802198, 0.002197802197802198, 0.002197802197802198, 0.002197802197802198, 0.002197802197802198, 0.004395604395604396, 0.9274725274725275, 0.054945054945054944, 0.03296703296703297, 0.006593406593406593, 0.6967032967032967, 0.778021978021978, 0.8505494505494505, 0.9054945054945055, 0.9384615384615385, 0.8835164835164835, 0.832967032967033, 0.7296703296703296, 0.006593406593406593, 0.006593406593406593, 0.002197802197802198, 0.002197802197802198, 0.12747252747252746, 0.004395604395604396, 0.004395604395604396, 0.002197802197802198, 0.002197802197802198, 0.002197802197802198, 0.002197802197802198, 0.002197802197802198, 0.002197802197802198, 0.002197802197802198, 0.004395604395604396, 0.013186813186813187, 0.8483516483516483, 0.3626373626373626, 0.25054945054945055, 0.08131868131868132, 0.07912087912087912, 0.06593406593406594, 0.9252747252747253, 0.865934065934066, 0.06813186813186813, 0.041758241758241756, 0.03956043956043956, 0.041758241758241756, 0.03956043956043956, 0.04395604395604396, 0.12307692307692308, 0.13406593406593406, 0.0945054945054945, 0.07032967032967033, 0.04395604395604396, 0.03736263736263736, 0.03956043956043956, 0.03956043956043956, 0.03956043956043956, 0.03956043956043956, 0.03956043956043956, 0.03956043956043956, 0.03956043956043956, 0.041758241758241756, 0.054945054945054944, 0.03956043956043956, 0.03956043956043956, 0.05054945054945055, 0.05934065934065934, 0.07912087912087912, 0.1054945054945055, 0.14285714285714285, 0.16703296703296702, 0.1956043956043956, 0.2549450549450549, 0.3054945054945055, 0.37362637362637363, 0.4747252747252747, 0.654945054945055, 0.8175824175824176], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/GTP1_OBG.gap.json b/pfam_gap_rates/GTP1_OBG.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..79ac4d70a5c1390e8b54496f4ba2e0a773afabd5
--- /dev/null
+++ b/pfam_gap_rates/GTP1_OBG.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/GUN4.gap.json b/pfam_gap_rates/GUN4.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d4fdfcee6868f8d50ed1ac7c443623d86562c521
--- /dev/null
+++ b/pfam_gap_rates/GUN4.gap.json
@@ -0,0 +1 @@
+{"family": "GUN4", "n_seqs": 313, "length": 165, "gap_rates": [0.9488817891373802, 0.5239616613418531, 0.44089456869009586, 0.3610223642172524, 0.2747603833865815, 0.16293929712460065, 0.11501597444089456, 0.0926517571884984, 0.06389776357827476, 0.04472843450479233, 0.04153354632587859, 0.038338658146964855, 0.038338658146964855, 0.03514376996805112, 0.03514376996805112, 0.03514376996805112, 0.03194888178913738, 0.03194888178913738, 0.03194888178913738, 0.03194888178913738, 0.03194888178913738, 0.03194888178913738, 0.03194888178913738, 0.03194888178913738, 0.03194888178913738, 0.03194888178913738, 0.03194888178913738, 0.03194888178913738, 0.03194888178913738, 0.03194888178913738, 0.03194888178913738, 0.03514376996805112, 0.03514376996805112, 0.03514376996805112, 0.03514376996805112, 0.03514376996805112, 0.03514376996805112, 0.04153354632587859, 0.6293929712460063, 0.6198083067092651, 0.11182108626198083, 0.04792332268370607, 0.038338658146964855, 0.038338658146964855, 0.03194888178913738, 0.02875399361022364, 0.025559105431309903, 0.025559105431309903, 0.02875399361022364, 0.02875399361022364, 0.02875399361022364, 0.019169329073482427, 0.019169329073482427, 0.022364217252396165, 0.019169329073482427, 0.019169329073482427, 0.019169329073482427, 0.01597444089456869, 0.01597444089456869, 0.01597444089456869, 0.019169329073482427, 0.019169329073482427, 0.019169329073482427, 0.019169329073482427, 0.019169329073482427, 0.019169329073482427, 0.019169329073482427, 0.01597444089456869, 0.01597444089456869, 0.01597444089456869, 0.01597444089456869, 0.019169329073482427, 0.019169329073482427, 0.019169329073482427, 0.019169329073482427, 0.019169329073482427, 0.019169329073482427, 0.019169329073482427, 0.019169329073482427, 0.019169329073482427, 0.019169329073482427, 0.019169329073482427, 0.019169329073482427, 0.019169329073482427, 0.025559105431309903, 0.025559105431309903, 0.03194888178913738, 0.4984025559105431, 0.5111821086261981, 0.5527156549520766, 0.7124600638977636, 0.8083067092651757, 0.939297124600639, 0.9488817891373802, 0.9424920127795527, 0.8690095846645367, 0.7731629392971247, 0.5718849840255591, 0.5143769968051118, 0.5015974440894568, 0.49201277955271566, 0.03514376996805112, 0.02875399361022364, 0.03194888178913738, 0.03194888178913738, 0.02875399361022364, 0.02875399361022364, 0.03194888178913738, 0.03194888178913738, 0.03194888178913738, 0.03194888178913738, 0.03194888178913738, 0.03514376996805112, 0.744408945686901, 0.7955271565495208, 0.8402555910543131, 0.9424920127795527, 0.853035143769968, 0.8019169329073482, 0.792332268370607, 0.7284345047923323, 0.03194888178913738, 0.06070287539936102, 0.05750798722044728, 0.06389776357827476, 0.0670926517571885, 0.06070287539936102, 0.0670926517571885, 0.0670926517571885, 0.06389776357827476, 0.051118210862619806, 0.6549520766773163, 0.054313099041533544, 0.06070287539936102, 0.06070287539936102, 0.06070287539936102, 0.0670926517571885, 0.06389776357827476, 0.865814696485623, 0.731629392971246, 0.06389776357827476, 0.06389776357827476, 0.06389776357827476, 0.06389776357827476, 0.06389776357827476, 0.06389776357827476, 0.06389776357827476, 0.07028753993610223, 0.16613418530351437, 0.2939297124600639, 0.4536741214057508, 0.46645367412140576, 0.5047923322683706, 0.5335463258785943, 0.536741214057508, 0.536741214057508, 0.5878594249201278, 0.6134185303514377, 0.6325878594249201, 0.6517571884984026, 0.6613418530351438, 0.6645367412140575, 0.6677316293929713, 0.6741214057507987, 0.6964856230031949], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Gcd10p.gap.json b/pfam_gap_rates/Gcd10p.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d48706081b075d3f50f1059929571af61ca891a7
--- /dev/null
+++ b/pfam_gap_rates/Gcd10p.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Git3.gap.json b/pfam_gap_rates/Git3.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..cdda43280341ddcd61643cb1cded69ff2b16ae2b
--- /dev/null
+++ b/pfam_gap_rates/Git3.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/GlcNAc_2-epim.gap.json b/pfam_gap_rates/GlcNAc_2-epim.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..9d9538e734cd61637335a6c0269c0e9aef6c0483
--- /dev/null
+++ b/pfam_gap_rates/GlcNAc_2-epim.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/GldH_lipo.gap.json b/pfam_gap_rates/GldH_lipo.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..1144f84a7d818a585555557d35b761ef7bf91672
--- /dev/null
+++ b/pfam_gap_rates/GldH_lipo.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Glu_dehyd_C.gap.json b/pfam_gap_rates/Glu_dehyd_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..427ee22cf957c0caeed079ad2e15533416dd1094
--- /dev/null
+++ b/pfam_gap_rates/Glu_dehyd_C.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Glu_synthase.gap.json b/pfam_gap_rates/Glu_synthase.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..4bda780d6b28b9ad04e1d6f2c7fbbb99887930c7
--- /dev/null
+++ b/pfam_gap_rates/Glu_synthase.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Glutaminase.gap.json b/pfam_gap_rates/Glutaminase.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..7d2b4128688f7e596fb46cbd90b7e03ed052e745
--- /dev/null
+++ b/pfam_gap_rates/Glutaminase.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Glyco_hydro_114.gap.json b/pfam_gap_rates/Glyco_hydro_114.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..1cdf212d66e0749f29aae3ab0985571e4d4fdfd6
--- /dev/null
+++ b/pfam_gap_rates/Glyco_hydro_114.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Glyco_hydro_16.gap.json b/pfam_gap_rates/Glyco_hydro_16.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e88b1722471821517d78ff8230707ae033e3d14c
--- /dev/null
+++ b/pfam_gap_rates/Glyco_hydro_16.gap.json
@@ -0,0 +1 @@
+{"family": "Glyco_hydro_16", "n_seqs": 3615, "length": 252, "gap_rates": [0.8885200553250345, 0.7900414937759336, 0.7311203319502074, 0.6865836791147995, 0.6484094052558783, 0.6160442600276625, 0.5692946058091286, 0.5244813278008299, 0.4954356846473029, 0.4636237897648686, 0.4376210235131397, 0.41715076071922547, 0.3991701244813278, 0.408298755186722, 0.37538035961272476, 0.37538035961272476, 0.38035961272475793, 0.35518672199170126, 0.815491009681881, 0.6143845089903182, 0.2979253112033195, 0.2874135546334716, 0.2802213001383126, 0.27634854771784234, 0.2721991701244813, 0.26666666666666666, 0.2600276625172891, 0.18229598893499308, 0.5872752420470263, 0.5980636237897649, 0.6647302904564315, 0.7858921161825726, 0.8348547717842324, 0.8829875518672199, 0.9172890733056708, 0.9452282157676348, 0.9491009681881051, 0.934716459197787, 0.8976486860304288, 0.8586445366528354, 0.8130013831258645, 0.6912863070539419, 0.6298755186721992, 0.5922544951590595, 0.5767634854771784, 0.13831258644536654, 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\ No newline at end of file
diff --git a/pfam_gap_rates/Glyco_hydro_2_N.gap.json b/pfam_gap_rates/Glyco_hydro_2_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d5f078f7960c457a36d4a0272404502861aa0fa6
--- /dev/null
+++ b/pfam_gap_rates/Glyco_hydro_2_N.gap.json
@@ -0,0 +1 @@
+{"family": "Glyco_hydro_2_N", "n_seqs": 2957, "length": 203, "gap_rates": [0.809604328711532, 0.6121068650659452, 0.47717281028068986, 0.4646601285086236, 0.45789651673993914, 0.4406493067297937, 0.4308420696652012, 0.4291511667230301, 0.4277984443692932, 0.42847480554616163, 0.4277984443692932, 0.4277984443692932, 0.42982752789989853, 0.43016570848833274, 0.427460263780859, 0.4267839026039905, 0.4210348326006087, 0.42002029083530606, 0.41393304024349004, 0.41156577612445044, 0.4037876225904633, 0.9019276293540751, 0.928982076428813, 0.9398038552587081, 0.9184984781873521, 0.8880622252282719, 0.39364220493743657, 0.5884342238755496, 0.5451471085559689, 0.5268853567805208, 0.4721001014541765, 0.466689212039229, 0.45924923909367604, 0.45383834967872844, 0.4349002367264119, 0.9005749070003382, 0.8911058505241799, 0.33513696313831587, 0.3226242813662496, 0.31214068312478865, 0.3101115995941833, 0.30639161312140684, 0.3019952654717619, 0.3016570848833277, 0.300642543118025, 0.297598917822117, 0.2962461954683801, 0.2982752789989855, 0.2986134595874197, 0.64051403449442, 0.6543794386202232, 0.9097057828880623, 0.9266148123097734, 0.9316875211362867, 0.9408183970240108, 0.9387893134934054, 0.928982076428813, 0.9144403111261413, 0.8904294893473115, 0.647954007439973, 0.6242813662495773, 0.5157253973621914, 0.48123097734190057, 0.4690564761582685, 0.4474129184984782, 0.4436929320257017, 0.44098748731822796, 0.4064930672979371, 0.39026039905309434, 0.36996956374704093, 0.36895502198173824, 0.3452823807913426, 0.2766317213391951, 0.2516063577950626, 0.23063916131214068, 0.21474467365573216, 0.20595197835644233, 0.20561379776800812, 0.19580656070341562, 0.19208657423063916, 0.9235711870138654, 0.3131552248900913, 0.2336827866080487, 0.10923233006425431, 0.06222522827189719, 0.038890767669935745, 0.026378085897869462, 0.020290835306053433, 0.01927629354075076, 0.017923571187013865, 0.01758539059857964, 0.01826175177544809, 0.019952654717619207, 0.021981738248224553, 0.022996280013527222, 0.031112614135948596, 0.04193439296584376, 0.05715251944538383, 0.045316198850186, 0.03246533648968549, 0.03314169766655394, 0.8542441663848495, 0.016232668244842745, 0.011836320595197836, 0.010821778829895164, 0.010145417653026716, 0.009469056476158269, 0.009130875887724045, 0.009130875887724045, 0.00879269529928982, 0.013189042948934731, 0.009130875887724045, 0.007778153533987149, 0.0074399729455529254, 0.006763611768684477, 0.006425431180250254, 0.006425431180250254, 0.005410889414947582, 0.005072708826513358, 0.005072708826513358, 0.0047345282380791345, 0.005072708826513358, 0.0047345282380791345, 0.0057490700033818055, 0.0057490700033818055, 0.007101792357118702, 0.008116334122421373, 0.011159959418329387, 0.017247210010145418, 0.01826175177544809, 0.013189042948934731, 0.009807237064592493, 0.00879269529928982, 0.009130875887724045, 0.00879269529928982, 0.00879269529928982, 0.011836320595197836, 0.009807237064592493, 0.011498140006763611, 0.013527223537368955, 0.01927629354075076, 0.017923571187013865, 0.016232668244842745, 0.9208657423063916, 0.017923571187013865, 0.03347987825498817, 0.020629015894487658, 0.019614474129184985, 0.7595536016232668, 0.021981738248224553, 0.022658099425093, 0.024687182955698342, 0.02536354413256679, 0.02874535001690903, 0.041596212377409535, 0.9184984781873521, 0.9276293540750761, 0.8971931011159959, 0.3642204937436591, 0.37368955021981737, 0.3659113966858302, 0.339871491376395, 0.9157930334798783, 0.9438620223199189, 0.8870476834629692, 0.2847480554616165, 0.2820426107541427, 0.2806898884004058, 0.2820426107541427, 0.2847480554616165, 0.29083530605343255, 0.23165370307744335, 0.22286100777815354, 0.6780520798106189, 0.9042948934731146, 0.928982076428813, 0.9462292864389584, 0.9171457558336151, 0.8812986134595874, 0.6188704768346297, 0.5918160297598918, 0.5759215421034832, 0.557321609739601, 0.5400743997294555, 0.2208319242475482, 0.22049374365911398, 0.2208319242475482, 0.2208319242475482, 0.9370984105512343, 0.22150828542441664, 0.2208319242475482, 0.2221846466012851, 0.2238755495434562, 0.22489009130875887, 0.22624281366249577, 0.22691917483936422, 0.22793371660466688, 0.2353736895502198, 0.25126817720662836, 0.35103145079472436, 0.46094014203584716, 0.5793033479878255, 0.6263104497801826], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Glyco_hydro_30C.gap.json b/pfam_gap_rates/Glyco_hydro_30C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f6e0c10551c214464a93f37bd54f3b9e826a693d
--- /dev/null
+++ b/pfam_gap_rates/Glyco_hydro_30C.gap.json
@@ -0,0 +1 @@
+{"family": "Glyco_hydro_30C", "n_seqs": 601, "length": 108, "gap_rates": [0.2895174708818636, 0.1930116472545757, 0.129783693843594, 0.11813643926788686, 0.11480865224625623, 0.11480865224625623, 0.11148086522462562, 0.11480865224625623, 0.11647254575707154, 0.16638935108153077, 0.32945091514143093, 0.4475873544093178, 0.5307820299500832, 0.6206322795341098, 0.9018302828618968, 0.9384359400998337, 0.8801996672212978, 0.37603993344425957, 0.06988352745424292, 0.024958402662229616, 0.009983361064891847, 0.004991680532445923, 0.0016638935108153079, 0.0016638935108153079, 0.0016638935108153079, 0.0016638935108153079, 0.014975041597337771, 0.008319467554076539, 0.0016638935108153079, 0.0033277870216306157, 0.0, 0.0, 0.0, 0.0016638935108153079, 0.0, 0.0, 0.0, 0.0, 0.004991680532445923, 0.0066555740432612314, 0.026622296173044926, 0.013311148086522463, 0.9434276206322796, 0.9118136439267887, 0.011647254575707155, 0.011647254575707155, 0.013311148086522463, 0.013311148086522463, 0.013311148086522463, 0.014975041597337771, 0.03494176372712146, 0.7870216306156406, 0.7936772046589018, 0.7953410981697171, 0.800332778702163, 0.800332778702163, 0.8036605657237936, 0.8086522462562395, 0.8535773710482529, 0.8752079866888519, 0.8868552412645591, 0.9018302828618968, 0.9151414309484193, 0.9434276206322796, 0.9334442595673876, 0.9068219633943427, 0.891846921797005, 0.8818635607321131, 0.8618968386023295, 0.8402662229617305, 0.8053244592346089, 0.800332778702163, 0.800332778702163, 0.7970049916805324, 0.7953410981697171, 0.7936772046589018, 0.7853577371048253, 0.018302828618968387, 0.1913477537437604, 0.34941763727121466, 0.2545757071547421, 0.8652246256239601, 0.8818635607321131, 0.8851913477537438, 0.8935108153078203, 0.9267886855241264, 0.9001663893510815, 0.891846921797005, 0.8851913477537438, 0.8768718801996672, 0.8569051580698835, 0.2795341098169717, 0.22129783693843594, 0.08652246256239601, 0.04326123128119801, 0.04326123128119801, 0.03826955074875208, 0.04492512479201331, 0.5324459234608985, 0.5158069883527454, 0.04492512479201331, 0.03993344425956739, 0.04326123128119801, 0.04492512479201331, 0.04492512479201331, 0.05324459234608985, 0.07653910149750416, 0.16306156405990016], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Glyco_hydro_32C.gap.json b/pfam_gap_rates/Glyco_hydro_32C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..bb73bf23263a1676941236b181fd8f7d64daf457
--- /dev/null
+++ b/pfam_gap_rates/Glyco_hydro_32C.gap.json
@@ -0,0 +1 @@
+{"family": "Glyco_hydro_32C", "n_seqs": 1114, "length": 103, "gap_rates": [0.9281867145421903, 0.4228007181328546, 0.28545780969479356, 0.21454219030520646, 0.1741472172351885, 0.13375224416517056, 0.12746858168761221, 0.12028725314183124, 0.11759425493716337, 0.11131059245960502, 0.10502692998204669, 0.09605026929982047, 0.09784560143626571, 0.4326750448833034, 0.3976660682226212, 0.08258527827648116, 0.07899461400359066, 0.06822262118491922, 0.06014362657091562, 0.05296229802513465, 0.05206463195691203, 0.05655296229802514, 0.07899461400359066, 0.07719928186714542, 0.0466786355475763, 0.04129263913824058, 0.04129263913824058, 0.03680430879712747, 0.6741472172351886, 0.6768402154398564, 0.6804308797127468, 0.822262118491921, 0.6786355475763016, 0.6750448833034112, 0.670556552962298, 0.03411131059245961, 0.03321364452423698, 0.03141831238779174, 0.0296229802513465, 0.0296229802513465, 0.02872531418312388, 0.2863554757630162, 0.29443447037701975, 0.28276481149012567, 0.05834829443447038, 0.10053859964093358, 0.08707360861759425, 0.0763016157989228, 0.06104129263913824, 0.400359066427289, 0.23159784560143626, 0.5700179533213644, 0.5242369838420108, 0.900359066427289, 0.9210053859964094, 0.9452423698384201, 0.9488330341113106, 0.9317773788150808, 0.9084380610412927, 0.8976660682226212, 0.5008976660682226, 0.5008976660682226, 0.44434470377019747, 0.22710951526032316, 0.18402154398563733, 0.16606822262118492, 0.144524236983842, 0.16247755834829444, 0.5206463195691203, 0.44703770197486536, 0.618491921005386, 0.7378815080789947, 0.9371633752244165, 0.9084380610412927, 0.6615798922800719, 0.585278276481149, 0.2764811490125673, 0.10861759425493717, 0.05296229802513465, 0.03770197486535009, 0.017953321364452424, 0.008976660682226212, 0.8922800718132855, 0.005385996409335727, 0.005385996409335727, 0.004488330341113106, 0.005385996409335727, 0.004488330341113106, 0.005385996409335727, 0.0062836624775583485, 0.005385996409335727, 0.009874326750448833, 0.009874326750448833, 0.009874326750448833, 0.009874326750448833, 0.009874326750448833, 0.010771992818671455, 0.010771992818671455, 0.01436265709156194, 0.019748653500897665, 0.025134649910233394, 0.04398563734290844, 0.09784560143626571], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Glyco_hydro_42M.gap.json b/pfam_gap_rates/Glyco_hydro_42M.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..6b280d38cba223908fd0b6f7efb81ee1c3f9ef83
--- /dev/null
+++ b/pfam_gap_rates/Glyco_hydro_42M.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Glyco_hydro_9.gap.json b/pfam_gap_rates/Glyco_hydro_9.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..bf9bc805233860a753b603a77341195f2878b2b9
--- /dev/null
+++ b/pfam_gap_rates/Glyco_hydro_9.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Glyco_tranf_2_4.gap.json b/pfam_gap_rates/Glyco_tranf_2_4.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f6dafa577395432e379d284fe6d83cbdf3aa7ec0
--- /dev/null
+++ b/pfam_gap_rates/Glyco_tranf_2_4.gap.json
@@ -0,0 +1 @@
+{"family": "Glyco_tranf_2_4", "n_seqs": 618, "length": 152, "gap_rates": [0.3106796116504854, 0.22006472491909385, 0.18284789644012944, 0.16019417475728157, 0.11326860841423948, 0.10355987055016182, 0.07119741100323625, 0.05825242718446602, 0.05177993527508091, 0.043689320388349516, 0.042071197411003236, 0.040453074433656956, 0.038834951456310676, 0.03398058252427184, 0.03398058252427184, 0.030744336569579287, 0.02912621359223301, 0.2087378640776699, 0.038834951456310676, 0.9255663430420712, 0.9255663430420712, 0.02912621359223301, 0.04692556634304207, 0.9336569579288025, 0.9320388349514563, 0.022653721682847898, 0.019417475728155338, 0.012944983818770227, 0.003236245954692557, 0.0016181229773462784, 0.003236245954692557, 0.006472491909385114, 0.003236245954692557, 0.0016181229773462784, 0.011326860841423949, 0.006472491909385114, 0.0048543689320388345, 0.003236245954692557, 0.003236245954692557, 0.0048543689320388345, 0.003236245954692557, 0.0048543689320388345, 0.0048543689320388345, 0.9158576051779935, 0.9498381877022654, 0.9239482200647249, 0.9061488673139159, 0.016181229773462782, 0.8090614886731392, 0.016181229773462782, 0.012944983818770227, 0.8964401294498382, 0.93042071197411, 0.8171521035598706, 0.009708737864077669, 0.008090614886731391, 0.9466019417475728, 0.8365695792880259, 0.008090614886731391, 0.011326860841423949, 0.012944983818770227, 0.014563106796116505, 0.011326860841423949, 0.7669902912621359, 0.8025889967637541, 0.8171521035598706, 0.8236245954692557, 0.8268608414239482, 0.8300970873786407, 0.8365695792880259, 0.8446601941747572, 0.9110032362459547, 0.8527508090614887, 0.8414239482200647, 0.8333333333333334, 0.8284789644012945, 0.8236245954692557, 0.8220064724919094, 0.8106796116504854, 0.7944983818770227, 0.7572815533980582, 0.009708737864077669, 0.0372168284789644, 0.025889967637540454, 0.8333333333333334, 0.9045307443365695, 0.9288025889967637, 0.9466019417475728, 0.9385113268608414, 0.9207119741100324, 0.8851132686084142, 0.7815533980582524, 0.042071197411003236, 0.1407766990291262, 0.9466019417475728, 0.09223300970873786, 0.03398058252427184, 0.01779935275080906, 0.011326860841423949, 0.8656957928802589, 0.8203883495145631, 0.011326860841423949, 0.009708737864077669, 0.9320388349514563, 0.009708737864077669, 0.012944983818770227, 0.009708737864077669, 0.012944983818770227, 0.9449838187702265, 0.9110032362459547, 0.011326860841423949, 0.009708737864077669, 0.038834951456310676, 0.9142394822006472, 0.872168284789644, 0.01779935275080906, 0.9368932038834952, 0.9029126213592233, 0.06472491909385113, 0.8964401294498382, 0.872168284789644, 0.05016181229773463, 0.901294498381877, 0.8851132686084142, 0.01779935275080906, 0.01779935275080906, 0.011326860841423949, 0.011326860841423949, 0.011326860841423949, 0.011326860841423949, 0.011326860841423949, 0.012944983818770227, 0.011326860841423949, 0.011326860841423949, 0.012944983818770227, 0.014563106796116505, 0.014563106796116505, 0.01779935275080906, 0.043689320388349516, 0.06634304207119741, 0.0889967637540453, 0.11488673139158576, 0.39805825242718446, 0.8203883495145631, 0.6245954692556634, 0.4741100323624595, 0.3948220064724919, 0.4110032362459547, 0.4627831715210356, 0.5226537216828478, 0.6019417475728155, 0.9093851132686084], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Glyco_transf_64.gap.json b/pfam_gap_rates/Glyco_transf_64.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..af8324dd7a386ed39647ccc673f888adcae2f826
--- /dev/null
+++ b/pfam_gap_rates/Glyco_transf_64.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/GntR.gap.json b/pfam_gap_rates/GntR.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..6616a0385203aa465e138815ef4aabfa3a25369c
--- /dev/null
+++ b/pfam_gap_rates/GntR.gap.json
@@ -0,0 +1 @@
+{"family": "GntR", "n_seqs": 5000, "length": 64, "gap_rates": [0.8194, 0.4184, 0.24, 0.1486, 0.0902, 0.0726, 0.059, 0.0494, 0.04, 0.037, 0.0322, 0.0278, 0.0266, 0.0246, 0.0218, 0.0382, 0.0234, 0.0098, 0.0104, 0.0162, 0.0128, 0.0068, 0.0048, 0.0034, 0.3062, 0.0026, 0.0022, 0.0018, 0.0016, 0.0016, 0.0006, 0.0006, 0.0008, 0.0008, 0.0008, 0.0008, 0.0008, 0.0008, 0.0004, 0.0004, 0.0008, 0.001, 0.0014, 0.0014, 0.0018, 0.0018, 0.0018, 0.002, 0.002, 0.0026, 0.0028, 0.003, 0.0036, 0.004, 0.0056, 0.0112, 0.0182, 0.0224, 0.0278, 0.0442, 0.0658, 0.0938, 0.1204, 0.1828], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/GramPos_pilinBB.gap.json b/pfam_gap_rates/GramPos_pilinBB.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..46063837390aad09c43b26d364dbb6da2114b778
--- /dev/null
+++ b/pfam_gap_rates/GramPos_pilinBB.gap.json
@@ -0,0 +1 @@
+{"family": "GramPos_pilinBB", "n_seqs": 136, "length": 163, "gap_rates": [0.3382352941176471, 0.14705882352941177, 0.11764705882352941, 0.08823529411764706, 0.07352941176470588, 0.07352941176470588, 0.07352941176470588, 0.07352941176470588, 0.08088235294117647, 0.07352941176470588, 0.0661764705882353, 0.0661764705882353, 0.051470588235294115, 0.051470588235294115, 0.7573529411764706, 0.9191176470588235, 0.9485294117647058, 0.9411764705882353, 0.7573529411764706, 0.6838235294117647, 0.058823529411764705, 0.03676470588235294, 0.6985294117647058, 0.03676470588235294, 0.029411764705882353, 0.029411764705882353, 0.022058823529411766, 0.022058823529411766, 0.8897058823529411, 0.9411764705882353, 0.8676470588235294, 0.022058823529411766, 0.8088235294117647, 0.7941176470588235, 0.022058823529411766, 0.022058823529411766, 0.8235294117647058, 0.8235294117647058, 0.022058823529411766, 0.022058823529411766, 0.022058823529411766, 0.014705882352941176, 0.029411764705882353, 0.014705882352941176, 0.014705882352941176, 0.014705882352941176, 0.014705882352941176, 0.014705882352941176, 0.014705882352941176, 0.8455882352941176, 0.9411764705882353, 0.4411764705882353, 0.014705882352941176, 0.04411764705882353, 0.029411764705882353, 0.014705882352941176, 0.014705882352941176, 0.014705882352941176, 0.014705882352941176, 0.014705882352941176, 0.029411764705882353, 0.022058823529411766, 0.029411764705882353, 0.6617647058823529, 0.7647058823529411, 0.8088235294117647, 0.8970588235294118, 0.9485294117647058, 0.9338235294117647, 0.8529411764705882, 0.7867647058823529, 0.7132352941176471, 0.6323529411764706, 0.29411764705882354, 0.08088235294117647, 0.051470588235294115, 0.9411764705882353, 0.8382352941176471, 0.04411764705882353, 0.0661764705882353, 0.03676470588235294, 0.9117647058823529, 0.029411764705882353, 0.03676470588235294, 0.029411764705882353, 0.014705882352941176, 0.0, 0.7867647058823529, 0.8823529411764706, 0.9485294117647058, 0.9485294117647058, 0.9044117647058824, 0.8308823529411765, 0.7279411764705882, 0.007352941176470588, 0.9117647058823529, 0.8602941176470589, 0.014705882352941176, 0.022058823529411766, 0.014705882352941176, 0.014705882352941176, 0.014705882352941176, 0.9485294117647058, 0.014705882352941176, 0.007352941176470588, 0.0, 0.0, 0.03676470588235294, 0.029411764705882353, 0.022058823529411766, 0.029411764705882353, 0.058823529411764705, 0.17647058823529413, 0.27941176470588236, 0.2426470588235294, 0.4485294117647059, 0.33088235294117646, 0.18382352941176472, 0.9411764705882353, 0.058823529411764705, 0.029411764705882353, 0.029411764705882353, 0.014705882352941176, 0.014705882352941176, 0.007352941176470588, 0.007352941176470588, 0.014705882352941176, 0.014705882352941176, 0.022058823529411766, 0.022058823529411766, 0.014705882352941176, 0.014705882352941176, 0.014705882352941176, 0.014705882352941176, 0.014705882352941176, 0.03676470588235294, 0.029411764705882353, 0.014705882352941176, 0.8382352941176471, 0.022058823529411766, 0.022058823529411766, 0.9264705882352942, 0.058823529411764705, 0.6617647058823529, 0.051470588235294115, 0.022058823529411766, 0.8823529411764706, 0.9485294117647058, 0.8897058823529411, 0.875, 0.029411764705882353, 0.029411764705882353, 0.029411764705882353, 0.029411764705882353, 0.029411764705882353, 0.03676470588235294, 0.03676470588235294, 0.0661764705882353, 0.08823529411764706, 0.13970588235294118, 0.19117647058823528, 0.27941176470588236, 0.4264705882352941], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Granulin.gap.json b/pfam_gap_rates/Granulin.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..13c4b6f3beb976727c97514e7b2b8aeea889bdb5
--- /dev/null
+++ b/pfam_gap_rates/Granulin.gap.json
@@ -0,0 +1 @@
+{"family": "Granulin", "n_seqs": 583, "length": 49, "gap_rates": [0.09948542024013722, 0.07204116638078903, 0.06174957118353345, 0.060034305317324184, 0.060034305317324184, 0.06174957118353345, 0.0823327615780446, 0.9090909090909091, 0.07032590051457976, 0.7547169811320755, 0.7821612349914236, 0.8644939965694682, 0.7735849056603774, 0.7512864493996569, 0.04631217838765009, 0.03773584905660377, 0.0274442538593482, 0.025728987993138937, 0.024013722126929673, 0.02058319039451115, 0.015437392795883362, 0.012006861063464836, 0.00686106346483705, 0.003430531732418525, 0.003430531732418525, 0.0017152658662092624, 0.0017152658662092624, 0.0017152658662092624, 0.003430531732418525, 0.030874785591766724, 0.024013722126929673, 0.003430531732418525, 0.003430531732418525, 0.003430531732418525, 0.003430531732418525, 0.00686106346483705, 0.00686106346483705, 0.010291595197255575, 0.7821612349914236, 0.017152658662092625, 0.018867924528301886, 0.044596912521440824, 0.10806174957118353, 0.07890222984562607, 0.0411663807890223, 0.05660377358490566, 0.07718696397941681, 0.08404802744425385, 0.5866209262435678], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/GspH.gap.json b/pfam_gap_rates/GspH.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..002b292bb880de691e270dfc8be1f3477ad7cb3a
--- /dev/null
+++ b/pfam_gap_rates/GspH.gap.json
@@ -0,0 +1 @@
+{"family": "GspH", "n_seqs": 658, "length": 175, "gap_rates": [0.601823708206687, 0.2735562310030395, 0.1474164133738602, 0.0729483282674772, 0.0364741641337386, 0.02127659574468085, 0.013677811550151976, 0.010638297872340425, 0.00911854103343465, 0.007598784194528876, 0.0060790273556231, 0.0060790273556231, 0.0060790273556231, 0.0060790273556231, 0.004559270516717325, 0.004559270516717325, 0.004559270516717325, 0.004559270516717325, 0.004559270516717325, 0.004559270516717325, 0.004559270516717325, 0.004559270516717325, 0.004559270516717325, 0.004559270516717325, 0.9346504559270516, 0.9179331306990881, 0.0060790273556231, 0.00911854103343465, 0.8936170212765957, 0.0911854103343465, 0.015197568389057751, 0.013677811550151976, 0.4908814589665654, 0.6732522796352584, 0.878419452887538, 0.5592705167173252, 0.3541033434650456, 0.30547112462006076, 0.6367781155015197, 0.7188449848024316, 0.8662613981762918, 0.9164133738601824, 0.939209726443769, 0.9285714285714286, 0.898176291793313, 0.7644376899696048, 0.6565349544072948, 0.6322188449848024, 0.30243161094224924, 0.15501519756838905, 0.7872340425531915, 0.8130699088145896, 0.8632218844984803, 0.9498480243161094, 0.9361702127659575, 0.8389057750759878, 0.8024316109422492, 0.7477203647416414, 0.034954407294832825, 0.022796352583586626, 0.015197568389057751, 0.015197568389057751, 0.010638297872340425, 0.00911854103343465, 0.8145896656534954, 0.878419452887538, 0.9209726443768997, 0.9376899696048632, 0.9468085106382979, 0.9452887537993921, 0.9346504559270516, 0.9057750759878419, 0.8601823708206687, 0.7644376899696048, 0.3905775075987842, 0.3586626139817629, 0.32978723404255317, 0.30547112462006076, 0.25835866261398177, 0.21428571428571427, 0.182370820668693, 0.11094224924012158, 0.06534954407294832, 0.06231003039513678, 0.037993920972644375, 0.04559270516717325, 0.22036474164133737, 0.17325227963525835, 0.9148936170212766, 0.939209726443769, 0.9468085106382979, 0.9285714285714286, 0.8951367781155015, 0.0364741641337386, 0.022796352583586626, 0.02735562310030395, 0.025835866261398176, 0.0243161094224924, 0.025835866261398176, 0.025835866261398176, 0.025835866261398176, 0.022796352583586626, 0.0243161094224924, 0.0243161094224924, 0.031914893617021274, 0.02735562310030395, 0.030395136778115502, 0.03951367781155015, 0.04559270516717325, 0.044072948328267476, 0.7401215805471124, 0.8586626139817629, 0.9057750759878419, 0.9194528875379939, 0.9437689969604863, 0.9316109422492401, 0.9164133738601824, 0.878419452887538, 0.8100303951367781, 0.6930091185410334, 0.4817629179331307, 0.35106382978723405, 0.23404255319148937, 0.08814589665653495, 0.03951367781155015, 0.025835866261398176, 0.0121580547112462, 0.0121580547112462, 0.0121580547112462, 0.0121580547112462, 0.0121580547112462, 0.9240121580547113, 0.0121580547112462, 0.0121580547112462, 0.6565349544072948, 0.8039513677811551, 0.8571428571428571, 0.9285714285714286, 0.8358662613981763, 0.7537993920972644, 0.541033434650456, 0.3221884498480243, 0.0364741641337386, 0.034954407294832825, 0.03343465045592705, 0.030395136778115502, 0.028875379939209727, 0.031914893617021274, 0.034954407294832825, 0.0364741641337386, 0.03951367781155015, 0.03951367781155015, 0.9027355623100304, 0.6580547112462006, 0.48936170212765956, 0.1717325227963526, 0.13221884498480244, 0.837386018237082, 0.9224924012158054, 0.8829787234042553, 0.8054711246200608, 0.09574468085106383, 0.11398176291793313, 0.11854103343465046, 0.13069908814589665, 0.6702127659574468, 0.6762917933130699, 0.1580547112462006, 0.1656534954407295, 0.18085106382978725, 0.196048632218845, 0.23556231003039513, 0.3191489361702128, 0.41641337386018235, 0.44072948328267475], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/GspL_C.gap.json b/pfam_gap_rates/GspL_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..17bb798b568fa67e771f2d762762dec717561c98
--- /dev/null
+++ b/pfam_gap_rates/GspL_C.gap.json
@@ -0,0 +1 @@
+{"family": "GspL_C", "n_seqs": 227, "length": 167, "gap_rates": [0.8149779735682819, 0.6740088105726872, 0.5022026431718062, 0.3876651982378855, 0.21145374449339208, 0.15859030837004406, 0.08370044052863436, 0.07488986784140969, 0.05286343612334802, 0.03524229074889868, 0.022026431718061675, 0.01762114537444934, 0.01762114537444934, 0.01762114537444934, 0.013215859030837005, 0.013215859030837005, 0.013215859030837005, 0.013215859030837005, 0.00881057268722467, 0.00881057268722467, 0.00881057268722467, 0.00881057268722467, 0.00881057268722467, 0.013215859030837005, 0.00881057268722467, 0.00881057268722467, 0.00881057268722467, 0.00881057268722467, 0.013215859030837005, 0.013215859030837005, 0.01762114537444934, 0.01762114537444934, 0.00881057268722467, 0.00881057268722467, 0.00881057268722467, 0.00881057268722467, 0.00881057268722467, 0.00881057268722467, 0.00881057268722467, 0.00881057268722467, 0.00881057268722467, 0.00881057268722467, 0.00881057268722467, 0.00881057268722467, 0.00881057268722467, 0.00881057268722467, 0.00881057268722467, 0.00881057268722467, 0.00881057268722467, 0.00881057268722467, 0.013215859030837005, 0.00881057268722467, 0.048458149779735685, 0.0881057268722467, 0.04405286343612335, 0.02643171806167401, 0.013215859030837005, 0.00881057268722467, 0.8722466960352423, 0.9251101321585903, 0.8458149779735683, 0.02643171806167401, 0.022026431718061675, 0.01762114537444934, 0.022026431718061675, 0.00881057268722467, 0.00881057268722467, 0.013215859030837005, 0.01762114537444934, 0.01762114537444934, 0.013215859030837005, 0.013215859030837005, 0.12334801762114538, 0.6828193832599119, 0.7533039647577092, 0.5814977973568282, 0.06607929515418502, 0.03524229074889868, 0.03524229074889868, 0.030837004405286344, 0.03524229074889868, 0.01762114537444934, 0.02643171806167401, 0.022026431718061675, 0.030837004405286344, 0.022026431718061675, 0.02643171806167401, 0.02643171806167401, 0.022026431718061675, 0.022026431718061675, 0.022026431718061675, 0.022026431718061675, 0.02643171806167401, 0.02643171806167401, 0.02643171806167401, 0.02643171806167401, 0.02643171806167401, 0.8766519823788547, 0.9118942731277533, 0.8414096916299559, 0.19823788546255505, 0.0881057268722467, 0.09251101321585903, 0.039647577092511016, 0.04405286343612335, 0.04405286343612335, 0.04405286343612335, 0.03524229074889868, 0.03524229074889868, 0.030837004405286344, 0.030837004405286344, 0.03524229074889868, 0.31718061674008813, 0.2555066079295154, 0.05726872246696035, 0.039647577092511016, 0.039647577092511016, 0.04405286343612335, 0.04405286343612335, 0.048458149779735685, 0.05286343612334802, 0.1762114537444934, 0.16740088105726872, 0.12334801762114538, 0.1277533039647577, 0.1013215859030837, 0.09691629955947137, 0.1013215859030837, 0.10572687224669604, 0.1145374449339207, 0.12334801762114538, 0.1277533039647577, 0.14096916299559473, 0.14537444933920704, 0.15418502202643172, 0.15418502202643172, 0.15859030837004406, 0.15859030837004406, 0.16740088105726872, 0.1762114537444934, 0.19383259911894274, 0.4185022026431718, 0.2290748898678414, 0.23348017621145375, 0.23788546255506607, 0.2511013215859031, 0.9295154185022027, 0.30837004405286345, 0.32599118942731276, 0.32158590308370044, 0.33480176211453744, 0.3392070484581498, 0.3436123348017621, 0.34801762114537443, 0.3568281938325991, 0.3568281938325991, 0.36123348017621143, 0.3744493392070485, 0.3744493392070485, 0.3744493392070485, 0.3832599118942731, 0.3920704845814978, 0.42290748898678415, 0.4669603524229075, 0.5286343612334802, 0.7312775330396476, 0.947136563876652], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/GvpL_GvpF.gap.json b/pfam_gap_rates/GvpL_GvpF.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..630d23fa57278225ef7aa4298f1b72daf79cc926
--- /dev/null
+++ b/pfam_gap_rates/GvpL_GvpF.gap.json
@@ -0,0 +1 @@
+{"family": "GvpL_GvpF", "n_seqs": 268, "length": 275, "gap_rates": [0.6567164179104478, 0.23507462686567165, 0.19776119402985073, 0.15298507462686567, 0.14925373134328357, 0.1455223880597015, 0.1455223880597015, 0.1455223880597015, 0.15298507462686567, 0.15298507462686567, 0.16044776119402984, 0.15298507462686567, 0.15671641791044777, 0.17164179104477612, 0.16791044776119404, 0.1791044776119403, 0.1791044776119403, 0.208955223880597, 0.458955223880597, 0.7313432835820896, 0.9216417910447762, 0.9402985074626866, 0.9477611940298507, 0.9291044776119403, 0.8805970149253731, 0.5970149253731343, 0.1455223880597015, 0.1455223880597015, 0.17164179104477612, 0.8059701492537313, 0.17537313432835822, 0.11940298507462686, 0.12313432835820895, 0.11567164179104478, 0.11567164179104478, 0.11194029850746269, 0.1044776119402985, 0.1044776119402985, 0.10074626865671642, 0.10074626865671642, 0.10074626865671642, 0.09701492537313433, 0.09701492537313433, 0.09701492537313433, 0.09701492537313433, 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\ No newline at end of file
diff --git a/pfam_gap_rates/HARE-HTH.gap.json b/pfam_gap_rates/HARE-HTH.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..9b0dc2bf79792d753fe7047d3e1fe15d3d6d9243
--- /dev/null
+++ b/pfam_gap_rates/HARE-HTH.gap.json
@@ -0,0 +1 @@
+{"family": "HARE-HTH", "n_seqs": 486, "length": 76, "gap_rates": [0.6604938271604939, 0.3333333333333333, 0.18106995884773663, 0.13786008230452676, 0.08436213991769548, 0.07818930041152264, 0.06995884773662552, 0.06378600823045268, 0.047325102880658436, 0.030864197530864196, 0.02880658436213992, 0.026748971193415638, 0.026748971193415638, 0.026748971193415638, 0.024691358024691357, 0.7530864197530864, 0.02880658436213992, 0.02263374485596708, 0.00823045267489712, 0.00823045267489712, 0.00823045267489712, 0.00823045267489712, 0.00823045267489712, 0.00823045267489712, 0.00823045267489712, 0.00823045267489712, 0.0102880658436214, 0.006172839506172839, 0.00823045267489712, 0.006172839506172839, 0.006172839506172839, 0.012345679012345678, 0.01440329218106996, 0.006172839506172839, 0.00411522633744856, 0.5267489711934157, 0.522633744855967, 0.7674897119341564, 0.09053497942386832, 0.06172839506172839, 0.0720164609053498, 0.04938271604938271, 0.05555555555555555, 0.026748971193415638, 0.01440329218106996, 0.01440329218106996, 0.00823045267489712, 0.4403292181069959, 0.018518518518518517, 0.01440329218106996, 0.018518518518518517, 0.024691358024691357, 0.02880658436213992, 0.030864197530864196, 0.13168724279835392, 0.8888888888888888, 0.8518518518518519, 0.7489711934156379, 0.2654320987654321, 0.2551440329218107, 0.2448559670781893, 0.03292181069958848, 0.02263374485596708, 0.02263374485596708, 0.02263374485596708, 0.024691358024691357, 0.15432098765432098, 0.0411522633744856, 0.0411522633744856, 0.047325102880658436, 0.04938271604938271, 0.051440329218107, 0.06584362139917696, 0.10082304526748971, 0.2222222222222222, 0.42386831275720166], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/HATPase_c_2.gap.json b/pfam_gap_rates/HATPase_c_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..12a2619937c0b1acc581d7408fe6553b2c8ebe0b
--- /dev/null
+++ b/pfam_gap_rates/HATPase_c_2.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/HCO3_cotransp.gap.json b/pfam_gap_rates/HCO3_cotransp.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..77e791137b60a4131550d24b6dec21100db9df56
--- /dev/null
+++ b/pfam_gap_rates/HCO3_cotransp.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/HD_3.gap.json b/pfam_gap_rates/HD_3.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..0aafaff3bfe40aaac673740a8b95300748375bdc
--- /dev/null
+++ b/pfam_gap_rates/HD_3.gap.json
@@ -0,0 +1 @@
+{"family": "HD_3", "n_seqs": 1315, "length": 188, "gap_rates": [0.6395437262357414, 0.264638783269962, 0.19315589353612167, 0.16653992395437262, 0.15817490494296577, 0.13840304182509505, 0.12547528517110265, 0.11939163498098859, 0.1155893536121673, 0.3300380228136882, 0.3133079847908745, 0.11482889733840304, 0.11330798479087452, 0.11254752851711027, 0.11330798479087452, 0.10646387832699619, 0.19543726235741446, 0.423574144486692, 0.07984790874524715, 0.07756653992395438, 0.07072243346007605, 0.06539923954372624, 0.06387832699619772, 0.060836501901140684, 0.06007604562737642, 0.06007604562737642, 0.049429657794676805, 0.04790874524714829, 0.04790874524714829, 0.04714828897338403, 0.04714828897338403, 0.04638783269961977, 0.04410646387832699, 0.04258555133079848, 0.04258555133079848, 0.04258555133079848, 0.04182509505703422, 0.04410646387832699, 0.045627376425855515, 0.04410646387832699, 0.04258555133079848, 0.21444866920152092, 0.8988593155893536, 0.938403041825095, 0.905703422053232, 0.8661596958174905, 0.37718631178707224, 0.31863117870722435, 0.04714828897338403, 0.04106463878326996, 0.0403041825095057, 0.0349809885931559, 0.03269961977186312, 0.030418250950570342, 0.028897338403041824, 0.028136882129277566, 0.024334600760456272, 0.024334600760456272, 0.9399239543726235, 0.9422053231939164, 0.9346007604562737, 0.024334600760456272, 0.023574144486692015, 0.023574144486692015, 0.023574144486692015, 0.023574144486692015, 0.025095057034220533, 0.025095057034220533, 0.023574144486692015, 0.023574144486692015, 0.023574144486692015, 0.024334600760456272, 0.02585551330798479, 0.025095057034220533, 0.03878326996197719, 0.034220532319391636, 0.09277566539923954, 0.08288973384030418, 0.7688212927756654, 0.8045627376425856, 0.8790874524714829, 0.7901140684410647, 0.7627376425855513, 0.1634980988593156, 0.9186311787072243, 0.09809885931558936, 0.04334600760456274, 0.037262357414448666, 0.037262357414448666, 0.044866920152091254, 0.03954372623574144, 0.04790874524714829, 0.04106463878326996, 0.03802281368821293, 0.03650190114068441, 0.034220532319391636, 0.034220532319391636, 0.0349809885931559, 0.03802281368821293, 0.03878326996197719, 0.0403041825095057, 0.03878326996197719, 0.04410646387832699, 0.04410646387832699, 0.04714828897338403, 0.06920152091254753, 0.0661596958174905, 0.06311787072243347, 0.05475285171102662, 0.8958174904942966, 0.9315589353612167, 0.9498098859315589, 0.914828897338403, 0.8228136882129278, 0.16806083650190115, 0.13460076045627375, 0.05855513307984791, 0.050190114068441066, 0.04790874524714829, 0.04790874524714829, 0.04638783269961977, 0.04638783269961977, 0.049429657794676805, 0.06463878326996197, 0.9285171102661597, 0.08897338403041825, 0.10190114068441064, 0.08365019011406843, 0.0844106463878327, 0.10798479087452471, 0.09429657794676806, 0.09125475285171103, 0.08745247148288973, 0.08517110266159696, 0.0806083650190114, 0.08365019011406843, 0.07376425855513308, 0.9475285171102662, 0.9482889733840304, 0.9406844106463879, 0.07680608365019011, 0.07452471482889733, 0.0752851711026616, 0.07452471482889733, 0.07604562737642585, 0.0806083650190114, 0.08212927756653993, 0.08212927756653993, 0.08365019011406843, 0.0844106463878327, 0.08973384030418251, 0.09657794676806084, 0.10342205323193916, 0.1391634980988593, 0.14372623574144486, 0.12623574144486693, 0.1361216730038023, 0.1482889733840304, 0.1543726235741445, 0.17186311787072242, 0.20608365019011407, 0.21673003802281368, 0.2623574144486692, 0.28365019011406845, 0.850190114068441, 0.3482889733840304, 0.34372623574144484, 0.2904942965779468, 0.30798479087452474, 0.3239543726235741, 0.33536121673003805, 0.355893536121673, 0.37338403041825097, 0.38098859315589356, 0.39923954372623577, 0.5984790874524715, 0.4935361216730038, 0.5155893536121673, 0.532319391634981, 0.5688212927756654, 0.6372623574144487, 0.6631178707224334, 0.6973384030418252, 0.7513307984790875, 0.7939163498098859, 0.8144486692015209, 0.8509505703422053, 0.8828897338403042], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/HHH.gap.json b/pfam_gap_rates/HHH.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..fa8e7ddbb408a3e145cffe73a8f1aa73f4089c0a
--- /dev/null
+++ b/pfam_gap_rates/HHH.gap.json
@@ -0,0 +1 @@
+{"family": "HHH", "n_seqs": 3484, "length": 30, "gap_rates": [0.6369115958668198, 0.1423650975889782, 0.10160734787600459, 0.07175660160734787, 0.05797933409873708, 0.03817451205510907, 0.02898966704936854, 0.025545350172215844, 0.019230769230769232, 0.0008610792192881745, 0.0002870264064293915, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0031572904707233064, 0.0169345579793341, 0.03645235361653272, 0.04535017221584386, 0.11423650975889782, 0.3105625717566016, 0.7075200918484501], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/HK97-gp10_like.gap.json b/pfam_gap_rates/HK97-gp10_like.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..4ec4d2f5a7a010e43a9c24cf6e7eafaabdaa64e8
--- /dev/null
+++ b/pfam_gap_rates/HK97-gp10_like.gap.json
@@ -0,0 +1 @@
+{"family": "HK97-gp10_like", "n_seqs": 419, "length": 121, "gap_rates": [0.7589498806682577, 0.40572792362768495, 0.2911694510739857, 0.25059665871121717, 0.2171837708830549, 0.18377088305489261, 0.13842482100238662, 0.1360381861575179, 0.12649164677804295, 0.9498806682577565, 0.10739856801909307, 0.10501193317422435, 0.12649164677804295, 0.7279236276849642, 0.11933174224343675, 0.0477326968973747, 0.03579952267303103, 0.026252983293556086, 0.01909307875894988, 0.011933174224343675, 0.011933174224343675, 0.00954653937947494, 0.007159904534606206, 0.007159904534606206, 0.00477326968973747, 0.00477326968973747, 0.00477326968973747, 0.00477326968973747, 0.00477326968973747, 0.007159904534606206, 0.00477326968973747, 0.002386634844868735, 0.002386634844868735, 0.002386634844868735, 0.002386634844868735, 0.002386634844868735, 0.002386634844868735, 0.002386634844868735, 0.002386634844868735, 0.002386634844868735, 0.649164677804296, 0.7350835322195705, 0.7708830548926014, 0.8257756563245824, 0.883054892601432, 0.9427207637231504, 0.9498806682577565, 0.9403341288782816, 0.8400954653937948, 0.7971360381861575, 0.7446300715990454, 0.6897374701670644, 0.6181384248210023, 0.5560859188544153, 0.05489260143198091, 0.0405727923627685, 0.002386634844868735, 0.6539379474940334, 0.0, 0.0, 0.9355608591885441, 0.9307875894988067, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.6897374701670644, 0.8162291169451074, 0.847255369928401, 0.918854415274463, 0.9498806682577565, 0.9260143198090692, 0.8568019093078759, 0.8400954653937948, 0.7684964200477327, 0.6515513126491647, 0.5966587112171837, 0.3031026252983294, 0.9069212410501193, 0.9069212410501193, 0.15274463007159905, 0.13365155131264916, 0.06682577565632458, 0.028639618138424822, 0.01909307875894988, 0.05489260143198091, 0.06921241050119331, 0.06205250596658711, 0.883054892601432, 0.03341288782816229, 0.028639618138424822, 0.02386634844868735, 0.026252983293556086, 0.028639618138424822, 0.028639618138424822, 0.03579952267303103, 0.03579952267303103, 0.03579952267303103, 0.0477326968973747, 0.7255369928400954, 0.8162291169451074, 0.8496420047732697, 0.9140811455847255, 0.9307875894988067, 0.9021479713603818, 0.8305489260143198, 0.7828162291169452, 0.6897374701670644, 0.0477326968973747, 0.883054892601432, 0.8520286396181385, 0.05250596658711217, 0.06205250596658711, 0.06205250596658711, 0.06205250596658711, 0.06682577565632458, 0.081145584725537, 0.09785202863961814], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/HMA.gap.json b/pfam_gap_rates/HMA.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..268b07f29a83184a4dbeddccdb973fbbe986308a
--- /dev/null
+++ b/pfam_gap_rates/HMA.gap.json
@@ -0,0 +1 @@
+{"family": "HMA", "n_seqs": 5000, "length": 65, "gap_rates": [0.7538, 0.3306, 0.178, 0.1028, 0.222, 0.065, 0.033, 0.0312, 0.0184, 0.0162, 0.014, 0.012, 0.0092, 0.0056, 0.0046, 0.0034, 0.0022, 0.002, 0.0018, 0.0018, 0.0046, 0.0034, 0.0114, 0.0134, 0.0038, 0.0024, 0.052, 0.0036, 0.0026, 0.0024, 0.003, 0.0032, 0.0034, 0.004, 0.0136, 0.0098, 0.0052, 0.0058, 0.0066, 0.0078, 0.0098, 0.0118, 0.9428, 0.9198, 0.0186, 0.0298, 0.0336, 0.0426, 0.8908, 0.4114, 0.3712, 0.3712, 0.0756, 0.0744, 0.0708, 0.073, 0.082, 0.0994, 0.1082, 0.1238, 0.1474, 0.1936, 0.2192, 0.253, 0.6068], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/HPP.gap.json b/pfam_gap_rates/HPP.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..292a52639fb8329e6af83bb9bfb831f4a11d5554
--- /dev/null
+++ b/pfam_gap_rates/HPP.gap.json
@@ -0,0 +1 @@
+{"family": "HPP", "n_seqs": 668, "length": 137, "gap_rates": [0.23203592814371257, 0.0748502994011976, 0.058383233532934134, 0.05389221556886228, 0.04790419161676647, 0.040419161676646706, 0.040419161676646706, 0.040419161676646706, 0.040419161676646706, 0.03592814371257485, 0.03592814371257485, 0.038922155688622756, 0.0344311377245509, 0.0344311377245509, 0.03293413173652695, 0.03143712574850299, 0.03143712574850299, 0.02694610778443114, 0.02844311377245509, 0.023952095808383235, 0.023952095808383235, 0.023952095808383235, 0.023952095808383235, 0.023952095808383235, 0.02245508982035928, 0.02245508982035928, 0.02245508982035928, 0.02245508982035928, 0.019461077844311378, 0.019461077844311378, 0.017964071856287425, 0.017964071856287425, 0.017964071856287425, 0.016467065868263474, 0.016467065868263474, 0.016467065868263474, 0.016467065868263474, 0.016467065868263474, 0.014970059880239521, 0.016467065868263474, 0.025449101796407185, 0.017964071856287425, 0.019461077844311378, 0.017964071856287425, 0.019461077844311378, 0.4161676646706587, 0.7005988023952096, 0.7245508982035929, 0.8323353293413174, 0.8667664670658682, 0.9146706586826348, 0.9311377245508982, 0.9221556886227545, 0.9086826347305389, 0.8458083832335329, 0.7305389221556886, 0.7080838323353293, 0.6826347305389222, 0.4041916167664671, 0.11826347305389222, 0.1122754491017964, 0.19311377245508982, 0.10179640718562874, 0.01347305389221557, 0.01347305389221557, 0.01347305389221557, 0.01347305389221557, 0.01347305389221557, 0.01347305389221557, 0.01347305389221557, 0.01347305389221557, 0.01347305389221557, 0.011976047904191617, 0.01347305389221557, 0.01347305389221557, 0.01347305389221557, 0.016467065868263474, 0.016467065868263474, 0.016467065868263474, 0.016467065868263474, 0.016467065868263474, 0.017964071856287425, 0.017964071856287425, 0.017964071856287425, 0.017964071856287425, 0.019461077844311378, 0.016467065868263474, 0.016467065868263474, 0.014970059880239521, 0.016467065868263474, 0.017964071856287425, 0.017964071856287425, 0.017964071856287425, 0.017964071856287425, 0.017964071856287425, 0.017964071856287425, 0.017964071856287425, 0.02694610778443114, 0.6377245508982036, 0.3398203592814371, 0.35179640718562877, 0.33532934131736525, 0.25898203592814373, 0.0344311377245509, 0.02844311377245509, 0.02694610778443114, 0.02694610778443114, 0.038922155688622756, 0.03592814371257485, 0.04491017964071856, 0.3248502994011976, 0.03143712574850299, 0.029940119760479042, 0.029940119760479042, 0.02844311377245509, 0.02844311377245509, 0.02844311377245509, 0.029940119760479042, 0.03592814371257485, 0.041916167664670656, 0.04790419161676647, 0.05239520958083832, 0.06437125748502993, 0.0718562874251497, 0.0748502994011976, 0.08982035928143713, 0.11526946107784432, 0.13023952095808383, 0.8967065868263473, 0.15269461077844312, 0.18113772455089822, 0.36377245508982037, 0.6841317365269461, 0.2155688622754491, 0.2215568862275449, 0.22604790419161677, 0.23502994011976047], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/HP_OMP.gap.json b/pfam_gap_rates/HP_OMP.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d90686d19e786a8cee57fa2def538362c3f41eb1
--- /dev/null
+++ b/pfam_gap_rates/HP_OMP.gap.json
@@ -0,0 +1 @@
+{"family": "HP_OMP", "n_seqs": 130, "length": 239, "gap_rates": [0.7307692307692307, 0.36153846153846153, 0.26153846153846155, 0.2076923076923077, 0.19230769230769232, 0.18461538461538463, 0.18461538461538463, 0.17692307692307693, 0.17692307692307693, 0.16153846153846155, 0.16153846153846155, 0.6076923076923076, 0.5153846153846153, 0.15384615384615385, 0.14615384615384616, 0.14615384615384616, 0.14615384615384616, 0.13846153846153847, 0.13846153846153847, 0.13846153846153847, 0.13846153846153847, 0.13846153846153847, 0.14615384615384616, 0.15384615384615385, 0.15384615384615385, 0.14615384615384616, 0.14615384615384616, 0.14615384615384616, 0.14615384615384616, 0.14615384615384616, 0.15384615384615385, 0.14615384615384616, 0.14615384615384616, 0.17692307692307693, 0.16923076923076924, 0.18461538461538463, 0.16923076923076924, 0.17692307692307693, 0.16923076923076924, 0.3076923076923077, 0.5, 0.6384615384615384, 0.6846153846153846, 0.7538461538461538, 0.7769230769230769, 0.8461538461538461, 0.8615384615384616, 0.9076923076923077, 0.9153846153846154, 0.9307692307692308, 0.9384615384615385, 0.9461538461538461, 0.9384615384615385, 0.9307692307692308, 0.9153846153846154, 0.9153846153846154, 0.8846153846153846, 0.8615384615384616, 0.8384615384615385, 0.7692307692307693, 0.7153846153846154, 0.6615384615384615, 0.6, 0.38461538461538464, 0.15384615384615385, 0.12307692307692308, 0.1076923076923077, 0.09230769230769231, 0.08461538461538462, 0.07692307692307693, 0.06153846153846154, 0.06153846153846154, 0.06153846153846154, 0.06153846153846154, 0.06153846153846154, 0.046153846153846156, 0.046153846153846156, 0.05384615384615385, 0.9153846153846154, 0.9153846153846154, 0.06153846153846154, 0.8923076923076924, 0.07692307692307693, 0.06923076923076923, 0.06153846153846154, 0.06153846153846154, 0.06923076923076923, 0.046153846153846156, 0.7692307692307693, 0.8076923076923077, 0.8923076923076924, 0.9153846153846154, 0.9230769230769231, 0.9076923076923077, 0.8615384615384616, 0.8076923076923077, 0.7615384615384615, 0.046153846153846156, 0.046153846153846156, 0.046153846153846156, 0.046153846153846156, 0.046153846153846156, 0.046153846153846156, 0.046153846153846156, 0.05384615384615385, 0.06153846153846154, 0.06153846153846154, 0.06923076923076923, 0.07692307692307693, 0.07692307692307693, 0.06153846153846154, 0.046153846153846156, 0.05384615384615385, 0.05384615384615385, 0.05384615384615385, 0.06153846153846154, 0.07692307692307693, 0.07692307692307693, 0.1076923076923077, 0.13076923076923078, 0.15384615384615385, 0.2923076923076923, 0.34615384615384615, 0.4153846153846154, 0.5538461538461539, 0.4846153846153846, 0.7923076923076923, 0.8384615384615385, 0.8769230769230769, 0.9307692307692308, 0.9307692307692308, 0.9384615384615385, 0.9461538461538461, 0.9461538461538461, 0.9461538461538461, 0.9461538461538461, 0.9384615384615385, 0.9307692307692308, 0.9307692307692308, 0.9, 0.8615384615384616, 0.8, 0.7615384615384615, 0.4153846153846154, 0.2153846153846154, 0.18461538461538463, 0.13076923076923078, 0.1, 0.08461538461538462, 0.08461538461538462, 0.08461538461538462, 0.06923076923076923, 0.05384615384615385, 0.9153846153846154, 0.9461538461538461, 0.9384615384615385, 0.9153846153846154, 0.05384615384615385, 0.038461538461538464, 0.038461538461538464, 0.038461538461538464, 0.038461538461538464, 0.038461538461538464, 0.038461538461538464, 0.038461538461538464, 0.046153846153846156, 0.046153846153846156, 0.046153846153846156, 0.046153846153846156, 0.046153846153846156, 0.8538461538461538, 0.8923076923076924, 0.8923076923076924, 0.8923076923076924, 0.9230769230769231, 0.9, 0.8923076923076924, 0.8923076923076924, 0.8615384615384616, 0.8461538461538461, 0.13846153846153847, 0.046153846153846156, 0.046153846153846156, 0.046153846153846156, 0.046153846153846156, 0.046153846153846156, 0.046153846153846156, 0.06153846153846154, 0.06153846153846154, 0.06153846153846154, 0.06153846153846154, 0.06923076923076923, 0.1, 0.11538461538461539, 0.18461538461538463, 0.2, 0.2153846153846154, 0.23846153846153847, 0.25384615384615383, 0.45384615384615384, 0.6, 0.7153846153846154, 0.7538461538461538, 0.8153846153846154, 0.823076923076923, 0.8538461538461538, 0.8923076923076924, 0.9307692307692308, 0.8846153846153846, 0.8461538461538461, 0.8153846153846154, 0.7923076923076923, 0.7461538461538462, 0.6307692307692307, 0.5923076923076923, 0.25384615384615383, 0.23076923076923078, 0.23076923076923078, 0.24615384615384617, 0.23076923076923078, 0.2230769230769231, 0.2230769230769231, 0.9461538461538461, 0.2230769230769231, 0.23846153846153847, 0.2230769230769231, 0.23076923076923078, 0.2230769230769231, 0.2230769230769231, 0.2230769230769231, 0.23076923076923078, 0.23076923076923078, 0.23846153846153847, 0.24615384615384617, 0.24615384615384617, 0.26153846153846155, 0.2692307692307692, 0.2923076923076923, 0.3], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/HSA.gap.json b/pfam_gap_rates/HSA.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..98ecc6190ec6c15288de320be5f34db02eb854b9
--- /dev/null
+++ b/pfam_gap_rates/HSA.gap.json
@@ -0,0 +1 @@
+{"family": "HSA", "n_seqs": 726, "length": 71, "gap_rates": [0.8402203856749312, 0.5550964187327824, 0.3526170798898072, 0.30165289256198347, 0.22176308539944903, 0.19696969696969696, 0.4765840220385675, 0.09641873278236915, 0.07024793388429752, 0.05785123966942149, 0.04269972451790634, 0.03856749311294766, 0.03443526170798898, 0.028925619834710745, 0.024793388429752067, 0.02203856749311295, 0.02203856749311295, 0.02203856749311295, 0.01928374655647383, 0.01790633608815427, 0.01790633608815427, 0.01790633608815427, 0.01790633608815427, 0.013774104683195593, 0.012396694214876033, 0.012396694214876033, 0.012396694214876033, 0.011019283746556474, 0.009641873278236915, 0.009641873278236915, 0.009641873278236915, 0.009641873278236915, 0.008264462809917356, 0.008264462809917356, 0.006887052341597796, 0.006887052341597796, 0.006887052341597796, 0.004132231404958678, 0.005509641873278237, 0.004132231404958678, 0.005509641873278237, 0.01652892561983471, 0.028925619834710745, 0.03581267217630854, 0.046831955922865015, 0.08539944903581267, 0.09917355371900827, 0.1115702479338843, 0.12947658402203857, 0.15426997245179064, 0.1721763085399449, 0.1859504132231405, 0.19834710743801653, 0.20523415977961432, 0.22451790633608815, 0.24380165289256198, 0.26170798898071623, 0.26584022038567495, 0.2713498622589532, 0.28236914600550966, 0.290633608815427, 0.2988980716253444, 0.30165289256198347, 0.3085399449035813, 0.31129476584022037, 0.3236914600550964, 0.3305785123966942, 0.3512396694214876, 0.3856749311294766, 0.418732782369146, 0.5853994490358126], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/HSBP1.gap.json b/pfam_gap_rates/HSBP1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a7b9df64f028c0d92b4e852df079c94a30eae3fa
--- /dev/null
+++ b/pfam_gap_rates/HSBP1.gap.json
@@ -0,0 +1 @@
+{"family": "HSBP1", "n_seqs": 250, "length": 51, "gap_rates": [0.608, 0.204, 0.152, 0.136, 0.124, 0.104, 0.092, 0.088, 0.084, 0.08, 0.068, 0.064, 0.064, 0.052, 0.044, 0.04, 0.04, 0.04, 0.04, 0.04, 0.024, 0.028, 0.028, 0.024, 0.02, 0.024, 0.016, 0.016, 0.096, 0.096, 0.096, 0.092, 0.096, 0.096, 0.096, 0.096, 0.1, 0.1, 0.104, 0.104, 0.104, 0.104, 0.108, 0.124, 0.14, 0.188, 0.224, 0.248, 0.38, 0.464, 0.66], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/HTH_10.gap.json b/pfam_gap_rates/HTH_10.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..8a1fc69151aef192bef934b7a684c16685f96c09
--- /dev/null
+++ b/pfam_gap_rates/HTH_10.gap.json
@@ -0,0 +1 @@
+{"family": "HTH_10", "n_seqs": 316, "length": 53, "gap_rates": [0.14240506329113925, 0.09177215189873418, 0.060126582278481014, 0.0379746835443038, 0.03164556962025317, 0.03164556962025317, 0.02531645569620253, 0.022151898734177215, 0.022151898734177215, 0.0189873417721519, 0.015822784810126583, 0.015822784810126583, 0.015822784810126583, 0.015822784810126583, 0.012658227848101266, 0.012658227848101266, 0.012658227848101266, 0.012658227848101266, 0.012658227848101266, 0.012658227848101266, 0.012658227848101266, 0.012658227848101266, 0.00949367088607595, 0.006329113924050633, 0.0031645569620253164, 0.0031645569620253164, 0.0031645569620253164, 0.0031645569620253164, 0.0031645569620253164, 0.0031645569620253164, 0.0031645569620253164, 0.0031645569620253164, 0.0031645569620253164, 0.0031645569620253164, 0.0031645569620253164, 0.0031645569620253164, 0.0031645569620253164, 0.0031645569620253164, 0.0031645569620253164, 0.0031645569620253164, 0.0031645569620253164, 0.0031645569620253164, 0.006329113924050633, 0.006329113924050633, 0.006329113924050633, 0.006329113924050633, 0.012658227848101266, 0.012658227848101266, 0.03164556962025317, 0.04430379746835443, 0.05063291139240506, 0.0981012658227848, 0.7468354430379747], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/HTH_22.gap.json b/pfam_gap_rates/HTH_22.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e883002c49c0690e21ca4bfc46f9f088642d919e
--- /dev/null
+++ b/pfam_gap_rates/HTH_22.gap.json
@@ -0,0 +1 @@
+{"family": "HTH_22", "n_seqs": 432, "length": 63, "gap_rates": [0.7986111111111112, 0.2986111111111111, 0.20601851851851852, 0.14351851851851852, 0.08564814814814815, 0.06018518518518518, 0.05555555555555555, 0.046296296296296294, 0.04398148148148148, 0.03935185185185185, 0.04398148148148148, 0.04398148148148148, 0.03935185185185185, 0.032407407407407406, 0.037037037037037035, 0.037037037037037035, 0.23148148148148148, 0.2152777777777778, 0.18518518518518517, 0.1712962962962963, 0.013888888888888888, 0.011574074074074073, 0.011574074074074073, 0.009259259259259259, 0.009259259259259259, 0.009259259259259259, 0.009259259259259259, 0.006944444444444444, 0.004629629629629629, 0.004629629629629629, 0.004629629629629629, 0.0023148148148148147, 0.0023148148148148147, 0.0023148148148148147, 0.0023148148148148147, 0.0023148148148148147, 0.0023148148148148147, 0.0023148148148148147, 0.0, 0.0, 0.0, 0.0, 0.0023148148148148147, 0.0023148148148148147, 0.0023148148148148147, 0.0023148148148148147, 0.0023148148148148147, 0.0023148148148148147, 0.0023148148148148147, 0.0023148148148148147, 0.0023148148148148147, 0.0023148148148148147, 0.0023148148148148147, 0.0023148148148148147, 0.0023148148148148147, 0.0023148148148148147, 0.0023148148148148147, 0.0023148148148148147, 0.0023148148148148147, 0.0023148148148148147, 0.009259259259259259, 0.027777777777777776, 0.29398148148148145], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/HTH_31.gap.json b/pfam_gap_rates/HTH_31.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..345e878ca19b1fc57c1dd9a936ec4ee5fed179e5
--- /dev/null
+++ b/pfam_gap_rates/HTH_31.gap.json
@@ -0,0 +1 @@
+{"family": "HTH_31", "n_seqs": 5000, "length": 80, "gap_rates": [0.6502, 0.3004, 0.185, 0.1536, 0.1144, 0.084, 0.064, 0.049, 0.0328, 0.0252, 0.0268, 0.0242, 0.0144, 0.8552, 0.8594, 0.8634, 0.866, 0.8662, 0.8672, 0.8694, 0.8768, 0.8704, 0.8684, 0.8664, 0.8662, 0.8648, 0.861, 0.8572, 0.8528, 0.0238, 0.0194, 0.0078, 0.0086, 0.008, 0.0064, 0.0056, 0.0054, 0.0044, 0.0024, 0.0016, 0.007, 0.0012, 0.0006, 0.0006, 0.0006, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0002, 0.0008, 0.0016, 0.003, 0.4516, 0.2804, 0.0128, 0.0186, 0.0098, 0.0098, 0.0148, 0.0162, 0.0182, 0.0226, 0.0252, 0.0308, 0.038, 0.0432, 0.0504, 0.0636, 0.0934, 0.1314, 0.2194, 0.304, 0.4172, 0.5164, 0.6426, 0.7212, 0.7998], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/HTH_35.gap.json b/pfam_gap_rates/HTH_35.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..982c17a445f329140fd726df42142208d6020a43
--- /dev/null
+++ b/pfam_gap_rates/HTH_35.gap.json
@@ -0,0 +1 @@
+{"family": "HTH_35", "n_seqs": 113, "length": 77, "gap_rates": [0.2920353982300885, 0.1592920353982301, 0.1415929203539823, 0.13274336283185842, 0.12389380530973451, 0.10619469026548672, 0.061946902654867256, 0.061946902654867256, 0.061946902654867256, 0.05309734513274336, 0.05309734513274336, 0.05309734513274336, 0.05309734513274336, 0.05309734513274336, 0.05309734513274336, 0.05309734513274336, 0.05309734513274336, 0.05309734513274336, 0.05309734513274336, 0.05309734513274336, 0.05309734513274336, 0.05309734513274336, 0.05309734513274336, 0.05309734513274336, 0.04424778761061947, 0.04424778761061947, 0.035398230088495575, 0.04424778761061947, 0.035398230088495575, 0.02654867256637168, 0.02654867256637168, 0.017699115044247787, 0.017699115044247787, 0.017699115044247787, 0.017699115044247787, 0.017699115044247787, 0.017699115044247787, 0.008849557522123894, 0.008849557522123894, 0.9380530973451328, 0.9380530973451328, 0.008849557522123894, 0.008849557522123894, 0.008849557522123894, 0.008849557522123894, 0.008849557522123894, 0.008849557522123894, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.008849557522123894, 0.008849557522123894, 0.04424778761061947, 0.05309734513274336, 0.05309734513274336, 0.10619469026548672, 0.168141592920354, 0.22123893805309736, 0.8230088495575221, 0.3274336283185841, 0.37168141592920356, 0.39823008849557523, 0.4247787610619469, 0.504424778761062, 0.5929203539823009, 0.6283185840707964, 0.7433628318584071], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/HTH_38.gap.json b/pfam_gap_rates/HTH_38.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..df390581302a5ea2cb2fe406b03777b3efa56bda
--- /dev/null
+++ b/pfam_gap_rates/HTH_38.gap.json
@@ -0,0 +1 @@
+{"family": "HTH_38", "n_seqs": 1042, "length": 44, "gap_rates": [0.6976967370441459, 0.3944337811900192, 0.2629558541266795, 0.17178502879078694, 0.09596928982725528, 0.0873320537428023, 0.0854126679462572, 0.0710172744721689, 0.06621880998080615, 0.06429942418426103, 0.05950095969289827, 0.025911708253358926, 0.02495201535508637, 0.02111324376199616, 0.01727447216890595, 0.011516314779270634, 0.018234165067178502, 0.008637236084452975, 0.008637236084452975, 0.005758157389635317, 0.0028790786948176585, 0.003838771593090211, 0.0028790786948176585, 0.0019193857965451055, 0.0, 0.0, 0.0009596928982725527, 0.0009596928982725527, 0.0019193857965451055, 0.0009596928982725527, 0.0019193857965451055, 0.0028790786948176585, 0.003838771593090211, 0.003838771593090211, 0.007677543186180422, 0.008637236084452975, 0.01055662188099808, 0.01727447216890595, 0.023032629558541268, 0.04702495201535509, 0.05470249520153551, 0.0854126679462572, 0.1890595009596929, 0.3531669865642994], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/HTH_8.gap.json b/pfam_gap_rates/HTH_8.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..33c5221ffdb4005510a01f71a9d4ba730c7ab06b
--- /dev/null
+++ b/pfam_gap_rates/HTH_8.gap.json
@@ -0,0 +1 @@
+{"family": "HTH_8", "n_seqs": 5000, "length": 42, "gap_rates": [0.8884, 0.4306, 0.3026, 0.2188, 0.1582, 0.1024, 0.0758, 0.053, 0.031, 0.0198, 0.0136, 0.0102, 0.0074, 0.0052, 0.0038, 0.003, 0.0024, 0.0016, 0.0312, 0.0016, 0.0012, 0.001, 0.0, 0.0, 0.0, 0.0002, 0.0008, 0.0014, 0.0016, 0.0018, 0.0022, 0.0026, 0.0034, 0.0044, 0.0052, 0.0122, 0.0226, 0.059, 0.0732, 0.106, 0.2236, 0.3738], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/HTH_AraC.gap.json b/pfam_gap_rates/HTH_AraC.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..10f35f6390e671b5aa305624df5b3894b81e692a
--- /dev/null
+++ b/pfam_gap_rates/HTH_AraC.gap.json
@@ -0,0 +1 @@
+{"family": "HTH_AraC", "n_seqs": 152, "length": 43, "gap_rates": [0.6776315789473685, 0.6052631578947368, 0.6907894736842105, 0.6513157894736842, 0.6513157894736842, 0.45394736842105265, 0.3092105263157895, 0.23684210526315788, 0.19078947368421054, 0.10526315789473684, 0.039473684210526314, 0.02631578947368421, 0.019736842105263157, 0.013157894736842105, 0.006578947368421052, 0.006578947368421052, 0.006578947368421052, 0.0, 0.0, 0.0, 0.6118421052631579, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.02631578947368421, 0.019736842105263157, 0.03289473684210526, 0.039473684210526314, 0.046052631578947366, 0.05263157894736842, 0.07894736842105263, 0.10526315789473684, 0.2631578947368421, 0.5592105263157895], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/HTH_AsnC-type.gap.json b/pfam_gap_rates/HTH_AsnC-type.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..026b0528aa98bf021a24790342aebfeba5eef598
--- /dev/null
+++ b/pfam_gap_rates/HTH_AsnC-type.gap.json
@@ -0,0 +1 @@
+{"family": "HTH_AsnC-type", "n_seqs": 2453, "length": 45, "gap_rates": [0.16754993885038727, 0.0591112922951488, 0.03750509580105993, 0.031797798613942115, 0.01141459437423563, 0.008153281695882593, 0.004891969017529555, 0.0028536485935589076, 0.0024459845087647777, 0.0020383204239706482, 0.0020383204239706482, 0.0012229922543823889, 0.0008153281695882593, 0.004484304932735426, 0.00040766408479412964, 0.9200978393803506, 0.9205055034651447, 0.9196901752955564, 0.00040766408479412964, 0.00040766408479412964, 0.00040766408479412964, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0008153281695882593, 0.0008153281695882593, 0.0008153281695882593, 0.0012229922543823889, 0.0016306563391765185, 0.0028536485935589076, 0.003261312678353037, 0.0036689767631471666, 0.005299633102323685, 0.00978393803505911, 0.012637586628618018, 0.02160619649408887, 0.03220546269873624, 0.3603750509580106], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/HUN.gap.json b/pfam_gap_rates/HUN.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..9455d2a6cd942246e0dda0cdcb40d026deadaa9d
--- /dev/null
+++ b/pfam_gap_rates/HUN.gap.json
@@ -0,0 +1 @@
+{"family": "HUN", "n_seqs": 292, "length": 54, "gap_rates": [0.9383561643835616, 0.726027397260274, 0.6027397260273972, 0.4965753424657534, 0.4452054794520548, 0.3595890410958904, 0.2808219178082192, 0.2465753424657534, 0.2534246575342466, 0.2191780821917808, 0.136986301369863, 0.05821917808219178, 0.03767123287671233, 0.03424657534246575, 0.003424657534246575, 0.003424657534246575, 0.003424657534246575, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.003424657534246575, 0.00684931506849315, 0.02054794520547945, 0.010273972602739725, 0.010273972602739725, 0.010273972602739725, 0.2910958904109589, 0.2945205479452055, 0.9452054794520548, 0.934931506849315, 0.2773972602739726, 0.030821917808219176, 0.0273972602739726, 0.03424657534246575, 0.03424657534246575, 0.0273972602739726, 0.02054794520547945, 0.02054794520547945, 0.02054794520547945, 0.023972602739726026, 0.023972602739726026, 0.023972602739726026, 0.0273972602739726, 0.030821917808219176, 0.05136986301369863, 0.09246575342465753, 0.5958904109589042], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/HYR.gap.json b/pfam_gap_rates/HYR.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..69043871ffeac6f0ba604417bd5d710a89640e01
--- /dev/null
+++ b/pfam_gap_rates/HYR.gap.json
@@ -0,0 +1 @@
+{"family": "HYR", "n_seqs": 1719, "length": 88, "gap_rates": [0.7085514834205934, 0.14368819080860964, 0.12972658522396743, 0.11343804537521815, 0.09656777196044211, 0.08202443280977312, 0.07678883071553229, 0.07271669575334497, 0.5636998254799301, 0.06282722513089005, 0.05759162303664921, 0.05700988947062245, 0.058755090168702735, 0.10180337405468295, 0.9243746364165212, 0.2414194299011053, 0.15066899360093078, 0.08318789994182664, 0.07562536358347877, 0.07097149505526469, 0.07271669575334497, 0.06050029086678301, 0.06282722513089005, 0.05410122164048865, 0.04886561954624782, 0.04595695171611402, 0.041884816753926704, 0.03723094822571262, 0.034904013961605584, 0.03315881326352531, 0.031995346131471786, 0.03315881326352531, 0.03315881326352531, 0.02675974403723095, 0.02036067481093659, 0.030831878999418267, 0.03257707969749855, 0.031995346131471786, 0.03374054682955206, 0.05700988947062245, 0.029668411867364748, 0.8726003490401396, 0.944153577661431, 0.8080279232111692, 0.3368237347294939, 0.08027923211169284, 0.04072134962187318, 0.02326934264107039, 0.013961605584642234, 0.018033740546829553, 0.01687027341477603, 0.012798138452588714, 0.012798138452588714, 0.012216404886561954, 0.009307737056428156, 0.018033740546829553, 0.029668411867364748, 0.013379872018615475, 0.009307737056428156, 0.006399069226294357, 0.006399069226294357, 0.011052937754508435, 0.8917975567190227, 0.004653868528214078, 0.006980802792321117, 0.004653868528214078, 0.004653868528214078, 0.005817335660267597, 0.005235602094240838, 0.005817335660267597, 0.005817335660267597, 0.006399069226294357, 0.009307737056428156, 0.008726003490401396, 0.013961605584642234, 0.013379872018615475, 0.012216404886561954, 0.013961605584642234, 0.013961605584642234, 0.9301919720767888, 0.015706806282722512, 0.019197207678883072, 0.02210587550901687, 0.02385107620709715, 0.028504944735311226, 0.038394415357766144, 0.07097149505526469, 0.16986620127981383], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/H_lectin.gap.json b/pfam_gap_rates/H_lectin.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..0d1b0347ac0f6b9a97b8a26c204e771c4ee52d4b
--- /dev/null
+++ b/pfam_gap_rates/H_lectin.gap.json
@@ -0,0 +1 @@
+{"family": "H_lectin", "n_seqs": 375, "length": 71, "gap_rates": [0.456, 0.21333333333333335, 0.12533333333333332, 0.08533333333333333, 0.08533333333333333, 0.07733333333333334, 0.9493333333333334, 0.072, 0.050666666666666665, 0.048, 0.037333333333333336, 0.02666666666666667, 0.021333333333333333, 0.021333333333333333, 0.018666666666666668, 0.010666666666666666, 0.010666666666666666, 0.0026666666666666666, 0.0026666666666666666, 0.0026666666666666666, 0.005333333333333333, 0.0026666666666666666, 0.005333333333333333, 0.005333333333333333, 0.06133333333333333, 0.936, 0.06133333333333333, 0.05333333333333334, 0.92, 0.096, 0.064, 0.037333333333333336, 0.021333333333333333, 0.010666666666666666, 0.936, 0.9146666666666666, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0026666666666666666, 0.005333333333333333, 0.008, 0.008, 0.008, 0.005333333333333333, 0.005333333333333333, 0.013333333333333334, 0.013333333333333334, 0.016, 0.021333333333333333, 0.024, 0.048, 0.128, 0.064, 0.08, 0.06933333333333333, 0.06933333333333333, 0.06133333333333333, 0.064, 0.064, 0.064, 0.06666666666666667, 0.07466666666666667, 0.07733333333333334, 0.088, 0.17866666666666667, 0.2693333333333333], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Hamartin.gap.json b/pfam_gap_rates/Hamartin.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..13ab5f8cbe910731be53a50ddfb1568460611919
--- /dev/null
+++ b/pfam_gap_rates/Hamartin.gap.json
@@ -0,0 +1 @@
+{"family": "Hamartin", "n_seqs": 175, "length": 988, "gap_rates": [0.8457142857142858, 0.7314285714285714, 0.6971428571428572, 0.6857142857142857, 0.6857142857142857, 0.6857142857142857, 0.6857142857142857, 0.6857142857142857, 0.68, 0.68, 0.68, 0.68, 0.68, 0.68, 0.6742857142857143, 0.6742857142857143, 0.6685714285714286, 0.6685714285714286, 0.6685714285714286, 0.6685714285714286, 0.6685714285714286, 0.6685714285714286, 0.6685714285714286, 0.6685714285714286, 0.6685714285714286, 0.6685714285714286, 0.6685714285714286, 0.7142857142857143, 0.7085714285714285, 0.6457142857142857, 0.6342857142857142, 0.6342857142857142, 0.6457142857142857, 0.6971428571428572, 0.64, 0.6228571428571429, 0.6228571428571429, 0.6228571428571429, 0.6228571428571429, 0.6228571428571429, 0.6228571428571429, 0.6228571428571429, 0.6228571428571429, 0.6228571428571429, 0.6228571428571429, 0.6171428571428571, 0.6171428571428571, 0.6057142857142858, 0.5885714285714285, 0.5885714285714285, 0.5714285714285714, 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\ No newline at end of file
diff --git a/pfam_gap_rates/Herpes_Helicase.gap.json b/pfam_gap_rates/Herpes_Helicase.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..99f11866fcd7c492c11e110493b6f5adc49fdf49
--- /dev/null
+++ b/pfam_gap_rates/Herpes_Helicase.gap.json
@@ -0,0 +1 @@
+{"family": "Herpes_Helicase", "n_seqs": 466, "length": 100, "gap_rates": [0.9463519313304721, 0.944206008583691, 0.944206008583691, 0.9399141630901288, 0.9399141630901288, 0.9377682403433476, 0.9377682403433476, 0.9334763948497854, 0.9313304721030042, 0.9291845493562232, 0.927038626609442, 0.9227467811158798, 0.9227467811158798, 0.9163090128755365, 0.9120171673819742, 0.907725321888412, 0.8798283261802575, 0.8390557939914163, 0.8090128755364807, 0.7832618025751072, 0.7682403433476395, 0.723175965665236, 0.703862660944206, 0.6566523605150214, 0.6502145922746781, 0.6137339055793991, 0.6030042918454935, 0.5686695278969958, 0.4248927038626609, 0.1459227467811159, 0.055793991416309016, 0.006437768240343348, 0.004291845493562232, 0.004291845493562232, 0.004291845493562232, 0.004291845493562232, 0.004291845493562232, 0.004291845493562232, 0.004291845493562232, 0.004291845493562232, 0.004291845493562232, 0.004291845493562232, 0.004291845493562232, 0.004291845493562232, 0.004291845493562232, 0.01072961373390558, 0.008583690987124463, 0.006437768240343348, 0.01072961373390558, 0.008583690987124463, 0.017167381974248927, 0.023605150214592276, 0.9399141630901288, 0.2553648068669528, 0.008583690987124463, 0.008583690987124463, 0.004291845493562232, 0.004291845493562232, 0.004291845493562232, 0.004291845493562232, 0.004291845493562232, 0.004291845493562232, 0.006437768240343348, 0.004291845493562232, 0.004291845493562232, 0.004291845493562232, 0.006437768240343348, 0.012875536480686695, 0.012875536480686695, 0.019313304721030045, 0.027896995708154508, 0.055793991416309016, 0.06652360515021459, 0.9399141630901288, 0.1072961373390558, 0.2167381974248927, 0.4871244635193133, 0.6158798283261803, 0.6373390557939914, 0.6373390557939914, 0.6630901287553648, 0.6802575107296137, 0.7060085836909872, 0.7167381974248928, 0.7660944206008584, 0.7982832618025751, 0.8497854077253219, 0.8626609442060086, 0.8819742489270386, 0.8862660944206009, 0.8969957081545065, 0.9012875536480687, 0.907725321888412, 0.9120171673819742, 0.9206008583690987, 0.9227467811158798, 0.9334763948497854, 0.9399141630901288, 0.9420600858369099, 0.944206008583691], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Herpes_UL52.gap.json b/pfam_gap_rates/Herpes_UL52.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..456bb9de42ccf1dd1d6eed221bd8c881079aec7d
--- /dev/null
+++ b/pfam_gap_rates/Herpes_UL52.gap.json
@@ -0,0 +1 @@
+{"family": "Herpes_UL52", "n_seqs": 149, "length": 78, "gap_rates": [0.7315436241610739, 0.5838926174496645, 0.5436241610738255, 0.4966442953020134, 0.46308724832214765, 0.3959731543624161, 0.3221476510067114, 0.26174496644295303, 0.2348993288590604, 0.2080536912751678, 0.2080536912751678, 0.20134228187919462, 0.18120805369127516, 0.18120805369127516, 0.20134228187919462, 0.4161073825503356, 0.9261744966442953, 0.9261744966442953, 0.37583892617449666, 0.7919463087248322, 0.7516778523489933, 0.6778523489932886, 0.5503355704697986, 0.5234899328859061, 0.013422818791946308, 0.013422818791946308, 0.013422818791946308, 0.013422818791946308, 0.013422818791946308, 0.006711409395973154, 0.006711409395973154, 0.006711409395973154, 0.006711409395973154, 0.0, 0.0, 0.006711409395973154, 0.10067114093959731, 0.12751677852348994, 0.03355704697986577, 0.020134228187919462, 0.006711409395973154, 0.006711409395973154, 0.006711409395973154, 0.006711409395973154, 0.006711409395973154, 0.020134228187919462, 0.0738255033557047, 0.8187919463087249, 0.8791946308724832, 0.9194630872483222, 0.8859060402684564, 0.87248322147651, 0.8523489932885906, 0.7516778523489933, 0.013422818791946308, 0.013422818791946308, 0.006711409395973154, 0.006711409395973154, 0.006711409395973154, 0.006711409395973154, 0.006711409395973154, 0.006711409395973154, 0.006711409395973154, 0.006711409395973154, 0.006711409395973154, 0.7114093959731543, 0.5503355704697986, 0.087248322147651, 0.11409395973154363, 0.12080536912751678, 0.1476510067114094, 0.2080536912751678, 0.2348993288590604, 0.2483221476510067, 0.2751677852348993, 0.30201342281879195, 0.37583892617449666, 0.7114093959731543], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Hexokinase_2.gap.json b/pfam_gap_rates/Hexokinase_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b02b30896e58ca3bfd0e20edf409dd248bf34fa0
--- /dev/null
+++ b/pfam_gap_rates/Hexokinase_2.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Hint.gap.json b/pfam_gap_rates/Hint.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..61f3f689ec20cfa5b99a36c0f061a588db88c8ea
--- /dev/null
+++ b/pfam_gap_rates/Hint.gap.json
@@ -0,0 +1 @@
+{"family": "Hint", "n_seqs": 357, "length": 259, "gap_rates": [0.7983193277310925, 0.7843137254901961, 0.773109243697479, 0.7563025210084033, 0.742296918767507, 0.6974789915966386, 0.6078431372549019, 0.5182072829131653, 0.39215686274509803, 0.2605042016806723, 0.19607843137254902, 0.16246498599439776, 0.15966386554621848, 0.15966386554621848, 0.1568627450980392, 0.15406162464985995, 0.15126050420168066, 0.14565826330532214, 0.1400560224089636, 0.1400560224089636, 0.13165266106442577, 0.13165266106442577, 0.12605042016806722, 0.12044817927170869, 0.31932773109243695, 0.11764705882352941, 0.11764705882352941, 0.11484593837535013, 0.1092436974789916, 0.10644257703081232, 0.10644257703081232, 0.10364145658263306, 0.10364145658263306, 0.10644257703081232, 0.10644257703081232, 0.10644257703081232, 0.1092436974789916, 0.1092436974789916, 0.1092436974789916, 0.1092436974789916, 0.1400560224089636, 0.12605042016806722, 0.8795518207282913, 0.29971988795518206, 0.15406162464985995, 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\ No newline at end of file
diff --git a/pfam_gap_rates/HipA_C.gap.json b/pfam_gap_rates/HipA_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..2e02062b447babe79698b2a3593006c89c6449c0
--- /dev/null
+++ b/pfam_gap_rates/HipA_C.gap.json
@@ -0,0 +1 @@
+{"family": "HipA_C", "n_seqs": 978, "length": 175, "gap_rates": [0.3261758691206544, 0.19325153374233128, 0.1554192229038855, 0.1390593047034765, 0.12883435582822086, 0.12576687116564417, 0.1196319018404908, 0.11451942740286299, 0.11247443762781185, 0.10940695296523517, 0.10736196319018405, 0.10531697341513292, 0.10429447852760736, 0.09713701431492842, 0.09304703476482618, 0.09611451942740286, 0.0950920245398773, 0.07975460122699386, 0.5920245398773006, 0.7617586912065439, 0.9141104294478528, 0.8946830265848671, 0.6554192229038854, 0.5777096114519428, 0.06952965235173825, 0.07157464212678936, 0.6901840490797546, 0.7004089979550102, 0.7811860940695297, 0.7975460122699386, 0.7924335378323109, 0.7474437627811861, 0.696319018404908, 0.6492842535787321, 0.06748466257668712, 0.0705521472392638, 0.06339468302658487, 0.06237218813905931, 0.06032719836400818, 0.05521472392638037, 0.05623721881390593, 0.07259713701431493, 0.39775051124744376, 0.48261758691206547, 0.5633946830265849, 0.6421267893660532, 0.8282208588957055, 0.2832310838445808, 0.1768916155419223, 0.07259713701431493, 0.04294478527607362, 0.032719836400818, 0.028629856850715747, 0.028629856850715747, 0.026584867075664622, 0.02147239263803681, 0.02147239263803681, 0.02044989775051125, 0.019427402862985686, 0.019427402862985686, 0.018404907975460124, 0.012269938650306749, 0.011247443762781187, 0.011247443762781187, 0.011247443762781187, 0.009202453987730062, 0.006134969325153374, 0.00408997955010225, 0.00408997955010225, 0.00408997955010225, 0.00408997955010225, 0.00408997955010225, 0.003067484662576687, 0.003067484662576687, 0.003067484662576687, 0.003067484662576687, 0.00408997955010225, 0.00408997955010225, 0.00408997955010225, 0.00408997955010225, 0.00408997955010225, 0.03885480572597137, 0.03169734151329243, 0.006134969325153374, 0.9028629856850716, 0.26993865030674846, 0.011247443762781187, 0.8098159509202454, 0.9386503067484663, 0.16768916155419222, 0.005112474437627812, 0.003067484662576687, 0.00408997955010225, 0.00408997955010225, 0.00408997955010225, 0.005112474437627812, 0.005112474437627812, 0.005112474437627812, 0.00408997955010225, 0.00408997955010225, 0.00408997955010225, 0.006134969325153374, 0.30368098159509205, 0.2689161554192229, 0.07668711656441718, 0.7157464212678937, 0.8118609406952966, 0.9049079754601227, 0.9100204498977505, 0.8374233128834356, 0.7934560327198364, 0.6595092024539877, 0.4447852760736196, 0.41922290388548056, 0.25971370143149286, 0.18302658486707565, 0.10531697341513292, 0.08384458077709611, 0.06952965235173825, 0.065439672801636, 0.06339468302658487, 0.06237218813905931, 0.07157464212678936, 0.06850715746421268, 0.06646216768916155, 0.07157464212678936, 0.0950920245398773, 0.07668711656441718, 0.08486707566462168, 0.0950920245398773, 0.40899795501022496, 0.843558282208589, 0.8905930470347648, 0.9458077709611452, 0.8548057259713702, 0.6370143149284253, 0.26278118609406953, 0.09202453987730061, 0.08895705521472393, 0.08588957055214724, 0.0869120654396728, 0.08793456032719836, 0.08793456032719836, 0.08793456032719836, 0.09100204498977506, 0.09202453987730061, 0.09100204498977506, 0.0950920245398773, 0.09406952965235174, 0.10020449897750511, 0.10122699386503067, 0.10224948875255624, 0.1032719836400818, 0.12985685071574643, 0.1165644171779141, 0.7321063394683026, 0.8558282208588958, 0.7975460122699386, 0.6881390593047034, 0.11860940695296524, 0.12167689161554192, 0.12372188139059305, 0.12883435582822086, 0.24028629856850717, 0.1411042944785276, 0.1523517382413088, 0.16666666666666666, 0.19120654396728015, 0.21779141104294478, 0.24130879345603273, 0.2822085889570552, 0.3476482617586912, 0.4376278118609407, 0.5869120654396728, 0.7709611451942741], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/HisKA.gap.json b/pfam_gap_rates/HisKA.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f4a8a439a9148e82094eaba7156e1ccf83521b2d
--- /dev/null
+++ b/pfam_gap_rates/HisKA.gap.json
@@ -0,0 +1 @@
+{"family": "HisKA", "n_seqs": 5000, "length": 75, "gap_rates": [0.717, 0.2414, 0.0946, 0.0506, 0.029, 0.0178, 0.015, 0.0084, 0.003, 0.002, 0.0014, 0.0014, 0.0014, 0.0014, 0.0014, 0.0014, 0.0014, 0.0006, 0.0006, 0.0006, 0.0004, 0.0004, 0.0004, 0.0002, 0.0002, 0.0002, 0.0018, 0.9368, 0.0064, 0.0076, 0.1192, 0.572, 0.8724, 0.9184, 0.949, 0.9376, 0.9034, 0.7148, 0.3634, 0.0636, 0.0282, 0.0968, 0.0244, 0.0198, 0.0198, 0.015, 0.0046, 0.0054, 0.005, 0.0044, 0.004, 0.004, 0.0048, 0.0048, 0.0046, 0.0058, 0.006, 0.0064, 0.0066, 0.007, 0.0078, 0.0084, 0.0096, 0.0112, 0.0132, 0.0146, 0.0266, 0.0342, 0.0436, 0.0572, 0.077, 0.1314, 0.2254, 0.385, 0.6334], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Histidinol_dh.gap.json b/pfam_gap_rates/Histidinol_dh.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..469513e3e85258b22128b3a255d872bf9de4beeb
--- /dev/null
+++ b/pfam_gap_rates/Histidinol_dh.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Histone_HNS.gap.json b/pfam_gap_rates/Histone_HNS.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..76211e9c0d0e3218cf05966c53aa01b27f5bb8c7
--- /dev/null
+++ b/pfam_gap_rates/Histone_HNS.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/HmuY.gap.json b/pfam_gap_rates/HmuY.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b7d3f53763515f26e1917206a095209706a7a252
--- /dev/null
+++ b/pfam_gap_rates/HmuY.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/HrcA.gap.json b/pfam_gap_rates/HrcA.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..4eb40833629f222bfe9f895782c7c7d2a27b3fbb
--- /dev/null
+++ b/pfam_gap_rates/HrcA.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/HsdM_N.gap.json b/pfam_gap_rates/HsdM_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..6f487789866016ad623b32decbfdf9351a432413
--- /dev/null
+++ b/pfam_gap_rates/HsdM_N.gap.json
@@ -0,0 +1 @@
+{"family": "HsdM_N", "n_seqs": 1944, "length": 186, "gap_rates": [0.41512345679012347, 0.1934156378600823, 0.10030864197530864, 0.06018518518518518, 0.048868312757201646, 0.04218106995884774, 0.03909465020576132, 0.035493827160493825, 0.03497942386831276, 0.032407407407407406, 0.03137860082304527, 0.02726337448559671, 0.026748971193415638, 0.029320987654320986, 0.028292181069958847, 0.8533950617283951, 0.6877572016460906, 0.02263374485596708, 0.8251028806584362, 0.018518518518518517, 0.01800411522633745, 0.015432098765432098, 0.01440329218106996, 0.01286008230452675, 0.01286008230452675, 0.01646090534979424, 0.012345679012345678, 0.012345679012345678, 0.01286008230452675, 0.011831275720164609, 0.00823045267489712, 0.00977366255144033, 0.00977366255144033, 0.0102880658436214, 0.0102880658436214, 0.01131687242798354, 0.010802469135802469, 0.01131687242798354, 0.011831275720164609, 0.011831275720164609, 0.013888888888888888, 0.03755144032921811, 0.04218106995884774, 0.04218106995884774, 0.07150205761316872, 0.05864197530864197, 0.04218106995884774, 0.048868312757201646, 0.3492798353909465, 0.34002057613168724, 0.3323045267489712, 0.6414609053497943, 0.7381687242798354, 0.8179012345679012, 0.8672839506172839, 0.9038065843621399, 0.9403292181069959, 0.9171810699588477, 0.8837448559670782, 0.8359053497942387, 0.7906378600823045, 0.6779835390946503, 0.6069958847736625, 0.33641975308641975, 0.48919753086419754, 0.485082304526749, 0.3441358024691358, 0.5684156378600823, 0.7824074074074074, 0.9212962962962963, 0.8641975308641975, 0.6903292181069959, 0.43775720164609055, 0.2726337448559671, 0.49691358024691357, 0.8364197530864198, 0.38117283950617287, 0.32613168724279834, 0.21347736625514405, 0.1918724279835391, 0.17335390946502058, 0.18981481481481483, 0.18055555555555555, 0.1831275720164609, 0.18261316872427982, 0.17181069958847736, 0.9279835390946503, 0.9465020576131687, 0.9372427983539094, 0.9156378600823045, 0.24588477366255143, 0.25462962962962965, 0.19907407407407407, 0.1640946502057613, 0.051954732510288065, 0.04372427983539095, 0.035493827160493825, 0.03652263374485597, 0.03652263374485597, 0.03652263374485597, 0.03652263374485597, 0.03652263374485597, 0.037037037037037035, 0.03755144032921811, 0.037037037037037035, 0.03806584362139918, 0.09773662551440329, 0.7890946502057613, 0.897633744855967, 0.9110082304526749, 0.9310699588477366, 0.9439300411522634, 0.9449588477366255, 0.934156378600823, 0.9254115226337448, 0.9053497942386831, 0.8374485596707819, 0.6640946502057613, 0.2911522633744856, 0.09259259259259259, 0.0874485596707819, 0.21656378600823045, 0.18055555555555555, 0.044753086419753084, 0.044238683127572016, 0.044753086419753084, 0.04526748971193416, 0.044753086419753084, 0.045781893004115226, 0.04526748971193416, 0.8153292181069959, 0.04526748971193416, 0.04526748971193416, 0.04526748971193416, 0.046296296296296294, 0.046296296296296294, 0.046296296296296294, 0.04681069958847737, 0.047839506172839504, 0.22067901234567902, 0.24331275720164608, 0.7577160493827161, 0.8338477366255144, 0.8801440329218106, 0.8647119341563786, 0.7978395061728395, 0.7361111111111112, 0.20421810699588477, 0.8467078189300411, 0.934156378600823, 0.8930041152263375, 0.7520576131687243, 0.06635802469135803, 0.056584362139917695, 0.058127572016460904, 0.060699588477366256, 0.06327160493827161, 0.22993827160493827, 0.6851851851851852, 0.23405349794238683, 0.6718106995884774, 0.44753086419753085, 0.3868312757201646, 0.3492798353909465, 0.3374485596707819, 0.33796296296296297, 0.22685185185185186, 0.21604938271604937, 0.24074074074074073, 0.24331275720164608, 0.31069958847736623, 0.4480452674897119, 0.37551440329218105, 0.12088477366255145, 0.10853909465020577, 0.10853909465020577, 0.11265432098765432, 0.11676954732510288, 0.11779835390946503, 0.12191358024691358, 0.12911522633744857, 0.13425925925925927, 0.14454732510288065, 0.1918724279835391, 0.27829218106995884, 0.43878600823045266], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/HupE_UreJ.gap.json b/pfam_gap_rates/HupE_UreJ.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..85320d093302c5b5c405f97b4a7288396a93e939
--- /dev/null
+++ b/pfam_gap_rates/HupE_UreJ.gap.json
@@ -0,0 +1 @@
+{"family": "HupE_UreJ", "n_seqs": 306, "length": 201, "gap_rates": [0.5816993464052288, 0.2581699346405229, 0.13725490196078433, 0.08823529411764706, 0.0784313725490196, 0.06862745098039216, 0.06862745098039216, 0.06535947712418301, 0.06535947712418301, 0.06209150326797386, 0.06209150326797386, 0.06209150326797386, 0.058823529411764705, 0.06209150326797386, 0.058823529411764705, 0.058823529411764705, 0.19934640522875818, 0.7941176470588235, 0.8954248366013072, 0.9183006535947712, 0.9117647058823529, 0.8627450980392157, 0.7450980392156863, 0.0915032679738562, 0.058823529411764705, 0.8398692810457516, 0.869281045751634, 0.8986928104575164, 0.8954248366013072, 0.8529411764705882, 0.8366013071895425, 0.03594771241830065, 0.032679738562091505, 0.026143790849673203, 0.026143790849673203, 0.026143790849673203, 0.026143790849673203, 0.026143790849673203, 0.026143790849673203, 0.026143790849673203, 0.026143790849673203, 0.029411764705882353, 0.026143790849673203, 0.026143790849673203, 0.026143790849673203, 0.026143790849673203, 0.026143790849673203, 0.026143790849673203, 0.026143790849673203, 0.029411764705882353, 0.032679738562091505, 0.032679738562091505, 0.029411764705882353, 0.026143790849673203, 0.026143790849673203, 0.03594771241830065, 0.032679738562091505, 0.0392156862745098, 0.0392156862745098, 0.0392156862745098, 0.21895424836601307, 0.22549019607843138, 0.9379084967320261, 0.9052287581699346, 0.0784313725490196, 0.05228758169934641, 0.049019607843137254, 0.05228758169934641, 0.05228758169934641, 0.058823529411764705, 0.06209150326797386, 0.049019607843137254, 0.042483660130718956, 0.049019607843137254, 0.049019607843137254, 0.0457516339869281, 0.042483660130718956, 0.0392156862745098, 0.0392156862745098, 0.0392156862745098, 0.03594771241830065, 0.042483660130718956, 0.042483660130718956, 0.0392156862745098, 0.042483660130718956, 0.0457516339869281, 0.049019607843137254, 0.049019607843137254, 0.0457516339869281, 0.0392156862745098, 0.0457516339869281, 0.0392156862745098, 0.03594771241830065, 0.0392156862745098, 0.042483660130718956, 0.0392156862745098, 0.0457516339869281, 0.042483660130718956, 0.0392156862745098, 0.03594771241830065, 0.03594771241830065, 0.03594771241830065, 0.03594771241830065, 0.03594771241830065, 0.032679738562091505, 0.0392156862745098, 0.03594771241830065, 0.03594771241830065, 0.0392156862745098, 0.049019607843137254, 0.049019607843137254, 0.05228758169934641, 0.058823529411764705, 0.05555555555555555, 0.049019607843137254, 0.049019607843137254, 0.05228758169934641, 0.9411764705882353, 0.9477124183006536, 0.9411764705882353, 0.0457516339869281, 0.049019607843137254, 0.0457516339869281, 0.05228758169934641, 0.049019607843137254, 0.0457516339869281, 0.042483660130718956, 0.049019607843137254, 0.05555555555555555, 0.049019607843137254, 0.049019607843137254, 0.05228758169934641, 0.0457516339869281, 0.042483660130718956, 0.042483660130718956, 0.0457516339869281, 0.0457516339869281, 0.0457516339869281, 0.049019607843137254, 0.049019607843137254, 0.049019607843137254, 0.049019607843137254, 0.1503267973856209, 0.06535947712418301, 0.0718954248366013, 0.058823529411764705, 0.07516339869281045, 0.10457516339869281, 0.12418300653594772, 0.10457516339869281, 0.8104575163398693, 0.803921568627451, 0.06535947712418301, 0.05228758169934641, 0.049019607843137254, 0.049019607843137254, 0.049019607843137254, 0.049019607843137254, 0.049019607843137254, 0.049019607843137254, 0.05228758169934641, 0.05228758169934641, 0.05228758169934641, 0.05228758169934641, 0.05228758169934641, 0.05555555555555555, 0.05555555555555555, 0.05228758169934641, 0.05228758169934641, 0.05228758169934641, 0.05228758169934641, 0.05555555555555555, 0.05555555555555555, 0.058823529411764705, 0.06209150326797386, 0.06862745098039216, 0.0718954248366013, 0.08496732026143791, 0.15359477124183007, 0.14705882352941177, 0.16339869281045752, 0.6895424836601307, 0.8464052287581699, 0.7908496732026143, 0.4477124183006536, 0.11437908496732026, 0.1111111111111111, 0.10784313725490197, 0.10784313725490197, 0.10784313725490197, 0.10784313725490197, 0.10784313725490197, 0.10784313725490197, 0.10784313725490197, 0.1111111111111111, 0.12418300653594772, 0.14052287581699346, 0.14052287581699346, 0.16339869281045752, 0.2647058823529412, 0.6111111111111112], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/HupF_HypC.gap.json b/pfam_gap_rates/HupF_HypC.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..88d82a403b062c02c04537bf76cf0b14591ce16a
--- /dev/null
+++ b/pfam_gap_rates/HupF_HypC.gap.json
@@ -0,0 +1 @@
+{"family": "HupF_HypC", "n_seqs": 747, "length": 75, "gap_rates": [0.09772423025435073, 0.0963855421686747, 0.08969210174029452, 0.07630522088353414, 0.06961178045515395, 0.06827309236947791, 0.04417670682730924, 0.03614457831325301, 0.03346720214190094, 0.03346720214190094, 0.0321285140562249, 0.029451137884872823, 0.029451137884872823, 0.02677376171352075, 0.6331994645247657, 0.8406961178045516, 0.9223560910307899, 0.7095046854082999, 0.4484605087014726, 0.024096385542168676, 0.013386880856760375, 0.013386880856760375, 0.013386880856760375, 0.012048192771084338, 0.012048192771084338, 0.012048192771084338, 0.013386880856760375, 0.006693440428380187, 0.006693440428380187, 0.0107095046854083, 0.006693440428380187, 0.006693440428380187, 0.00535475234270415, 0.00535475234270415, 0.004016064257028112, 0.006693440428380187, 0.006693440428380187, 0.002677376171352075, 0.8152610441767069, 0.9170013386880856, 0.9477911646586346, 0.9129852744310576, 0.6907630522088354, 0.009370816599732263, 0.0749665327978581, 0.004016064257028112, 0.004016064257028112, 0.0013386880856760374, 0.0013386880856760374, 0.0013386880856760374, 0.0013386880856760374, 0.0013386880856760374, 0.0013386880856760374, 0.0013386880856760374, 0.0013386880856760374, 0.0013386880856760374, 0.0013386880856760374, 0.0013386880856760374, 0.0013386880856760374, 0.0013386880856760374, 0.0013386880856760374, 0.002677376171352075, 0.006693440428380187, 0.013386880856760375, 0.0214190093708166, 0.029451137884872823, 0.038821954484605084, 0.04819277108433735, 0.0535475234270415, 0.05488621151271754, 0.060240963855421686, 0.06693440428380187, 0.0856760374832664, 0.15127175368139223, 0.37617135207496655], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Hydrolase_2.gap.json b/pfam_gap_rates/Hydrolase_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..eadc3d3ea250718e6dc51840dcca581e7e592423
--- /dev/null
+++ b/pfam_gap_rates/Hydrolase_2.gap.json
@@ -0,0 +1 @@
+{"family": "Hydrolase_2", "n_seqs": 1239, "length": 132, "gap_rates": [0.3284907183212268, 0.12994350282485875, 0.07183212267958031, 0.04600484261501211, 0.03551251008878128, 0.031476997578692496, 0.01937046004842615, 0.01533494753833737, 0.012106537530266344, 0.010492332526230832, 0.00887812752219532, 0.00887812752219532, 0.00887812752219532, 0.008071025020177562, 0.005649717514124294, 0.005649717514124294, 0.005649717514124294, 0.005649717514124294, 0.005649717514124294, 0.831315577078289, 0.012106537530266344, 0.831315577078289, 0.026634382566585957, 0.01694915254237288, 0.00887812752219532, 0.8660209846650525, 0.008071025020177562, 0.012106537530266344, 0.00645682001614205, 0.9079903147699758, 0.8773204196933011, 0.004842615012106538, 0.004842615012106538, 0.004842615012106538, 0.004842615012106538, 0.005649717514124294, 0.007263922518159807, 0.00645682001614205, 0.937046004842615, 0.007263922518159807, 0.005649717514124294, 0.7070217917675545, 0.7247780468119451, 0.870863599677159, 0.8361581920903954, 0.7110573042776432, 0.7062146892655368, 0.005649717514124294, 0.004035512510088781, 0.004035512510088781, 0.004035512510088781, 0.005649717514124294, 0.03631961259079903, 0.033091202582728005, 0.04116222760290557, 0.023405972558514933, 0.3785310734463277, 0.8619854721549637, 0.9136400322841001, 0.8894269572235673, 0.7586763518966909, 0.1089588377723971, 0.024213075060532687, 0.2009685230024213, 0.9443099273607748, 0.07344632768361582, 0.1033091202582728, 0.15334947538337368, 0.24051654560129138, 0.6142050040355125, 0.7772397094430993, 0.5351089588377724, 0.5012106537530266, 0.41727199354318, 0.3107344632768362, 0.008071025020177562, 0.008071025020177562, 0.009685230024213076, 0.00887812752219532, 0.010492332526230832, 0.010492332526230832, 0.011299435028248588, 0.0129136400322841, 0.013720742534301856, 0.013720742534301856, 0.013720742534301856, 0.014527845036319613, 0.5230024213075061, 0.9023405972558515, 0.5536723163841808, 0.03228410008071025, 0.021791767554479417, 0.020177562550443905, 0.020177562550443905, 0.021791767554479417, 0.020984665052461663, 0.021791767554479417, 0.020984665052461663, 0.020984665052461663, 0.021791767554479417, 0.02744148506860371, 0.033091202582728005, 0.042776432606941084, 0.07263922518159806, 0.8498789346246973, 0.9394673123486683, 0.9160613397901534, 0.483454398708636, 0.13962873284907182, 0.8886198547215496, 0.8563357546408394, 0.13317191283292978, 0.11541565778853914, 0.1089588377723971, 0.14769975786924938, 0.14689265536723164, 0.4923325262308313, 0.8611783696529459, 0.324455205811138, 0.16545601291364004, 0.2413236481033091, 0.20742534301856336, 0.13075060532687652, 0.11945117029862792, 0.10976594027441484, 0.11057304277643261, 0.11218724778046812, 0.11218724778046812, 0.11299435028248588, 0.11299435028248588, 0.11299435028248588, 0.34059725585149314], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Hydrolase_3.gap.json b/pfam_gap_rates/Hydrolase_3.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..58a57f325780e24370e8052a58e00d6cf2320d73
--- /dev/null
+++ b/pfam_gap_rates/Hydrolase_3.gap.json
@@ -0,0 +1 @@
+{"family": "Hydrolase_3", "n_seqs": 5000, "length": 283, "gap_rates": [0.3542, 0.2722, 0.2546, 0.2538, 0.2484, 0.248, 0.2476, 0.2472, 0.2466, 0.267, 0.2494, 0.249, 0.2496, 0.249, 0.2466, 0.9324, 0.2478, 0.247, 0.2434, 0.2438, 0.243, 0.2422, 0.2416, 0.2412, 0.2408, 0.2406, 0.2402, 0.2428, 0.2434, 0.2662, 0.2474, 0.2466, 0.24, 0.24, 0.2392, 0.2388, 0.2388, 0.239, 0.2392, 0.2392, 0.2398, 0.2402, 0.2408, 0.241, 0.242, 0.242, 0.2428, 0.243, 0.243, 0.2438, 0.244, 0.2558, 0.245, 0.2446, 0.2582, 0.2528, 0.8582, 0.8684, 0.8, 0.3736, 0.2458, 0.2434, 0.2438, 0.246, 0.2434, 0.2426, 0.2414, 0.2412, 0.2428, 0.2448, 0.9342, 0.665, 0.4822, 0.2764, 0.2714, 0.272, 0.272, 0.2738, 0.2756, 0.2768, 0.293, 0.282, 0.2796, 0.2806, 0.2804, 0.2808, 0.2852, 0.2822, 0.2814, 0.2822, 0.283, 0.2834, 0.283, 0.2846, 0.2848, 0.2862, 0.2866, 0.2868, 0.2884, 0.3002, 0.2952, 0.8702, 0.773, 0.2932, 0.2948, 0.2956, 0.2954, 0.2984, 0.298, 0.3016, 0.3004, 0.3014, 0.3002, 0.3004, 0.2998, 0.3004, 0.3014, 0.303, 0.3018, 0.8152, 0.8438, 0.8642, 0.8908, 0.9264, 0.936, 0.947, 0.942, 0.931, 0.9152, 0.8752, 0.853, 0.8298, 0.785, 0.6996, 0.5992, 0.4784, 0.3848, 0.3566, 0.3374, 0.329, 0.3202, 0.3152, 0.3122, 0.312, 0.3094, 0.309, 0.3092, 0.3084, 0.3072, 0.306, 0.3058, 0.3058, 0.307, 0.3074, 0.3038, 0.3032, 0.3004, 0.2998, 0.2988, 0.2976, 0.2978, 0.3332, 0.2948, 0.2914, 0.288, 0.288, 0.2882, 0.2926, 0.9456, 0.7398, 0.2912, 0.289, 0.286, 0.2836, 0.282, 0.28, 0.2784, 0.2792, 0.2794, 0.278, 0.2758, 0.2752, 0.2728, 0.2712, 0.2696, 0.2694, 0.2694, 0.271, 0.329, 0.413, 0.4474, 0.4864, 0.4832, 0.907, 0.9492, 0.8636, 0.2782, 0.269, 0.2628, 0.2586, 0.255, 0.2486, 0.2444, 0.237, 0.2312, 0.226, 0.2166, 0.2022, 0.197, 0.1956, 0.1902, 0.1854, 0.1728, 0.1348, 0.1278, 0.128, 0.1286, 0.1276, 0.127, 0.1256, 0.1234, 0.1214, 0.123, 0.1334, 0.1342, 0.1304, 0.1266, 0.127, 0.1276, 0.1282, 0.1194, 0.111, 0.1066, 0.106, 0.106, 0.1042, 0.1032, 0.1036, 0.1044, 0.1064, 0.1064, 0.1062, 0.1062, 0.1062, 0.1052, 0.1058, 0.106, 0.107, 0.1072, 0.1138, 0.1096, 0.1096, 0.11, 0.1122, 0.1192, 0.128, 0.1332, 0.139, 0.143, 0.147, 0.1478, 0.1486, 0.1502, 0.1524, 0.1558, 0.159, 0.162, 0.1636, 0.166, 0.1688, 0.1762, 0.1996, 0.2264, 0.249, 0.2612, 0.9118, 0.2852, 0.288, 0.3066, 0.3204, 0.3482, 0.408, 0.5236], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Hydrophobin_2.gap.json b/pfam_gap_rates/Hydrophobin_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e58c959977cf7b2f3b728b48fcbe0706e6c15ac8
--- /dev/null
+++ b/pfam_gap_rates/Hydrophobin_2.gap.json
@@ -0,0 +1 @@
+{"family": "Hydrophobin_2", "n_seqs": 106, "length": 67, "gap_rates": [0.1320754716981132, 0.32075471698113206, 0.1320754716981132, 0.09433962264150944, 0.8679245283018868, 0.22641509433962265, 0.1792452830188679, 0.1320754716981132, 0.018867924528301886, 0.018867924528301886, 0.018867924528301886, 0.018867924528301886, 0.018867924528301886, 0.018867924528301886, 0.018867924528301886, 0.018867924528301886, 0.05660377358490566, 0.02830188679245283, 0.02830188679245283, 0.018867924528301886, 0.02830188679245283, 0.02830188679245283, 0.018867924528301886, 0.018867924528301886, 0.018867924528301886, 0.018867924528301886, 0.018867924528301886, 0.018867924528301886, 0.018867924528301886, 0.09433962264150944, 0.9433962264150944, 0.03773584905660377, 0.03773584905660377, 0.02830188679245283, 0.009433962264150943, 0.018867924528301886, 0.018867924528301886, 0.018867924528301886, 0.018867924528301886, 0.018867924528301886, 0.018867924528301886, 0.018867924528301886, 0.009433962264150943, 0.05660377358490566, 0.05660377358490566, 0.018867924528301886, 0.018867924528301886, 0.02830188679245283, 0.018867924528301886, 0.018867924528301886, 0.018867924528301886, 0.018867924528301886, 0.018867924528301886, 0.018867924528301886, 0.03773584905660377, 0.03773584905660377, 0.02830188679245283, 0.0660377358490566, 0.08490566037735849, 0.09433962264150944, 0.09433962264150944, 0.09433962264150944, 0.09433962264150944, 0.09433962264150944, 0.10377358490566038, 0.20754716981132076, 0.4339622641509434], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/IBN_N.gap.json b/pfam_gap_rates/IBN_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f13cdd244b7f95a189e538b821f52184eeaa18b4
--- /dev/null
+++ b/pfam_gap_rates/IBN_N.gap.json
@@ -0,0 +1 @@
+{"family": "IBN_N", "n_seqs": 2785, "length": 85, "gap_rates": [0.33213644524236985, 0.19245960502693, 0.13967684021543986, 0.11131059245960502, 0.09874326750448834, 0.08545780969479354, 0.0710951526032316, 0.06570915619389588, 0.06068222621184919, 0.05314183123877918, 0.8718132854578097, 0.8434470377019748, 0.04452423698384201, 0.04021543985637343, 0.03590664272890485, 0.03231597845601436, 0.026929982046678635, 0.02405745062836625, 0.02082585278276481, 0.01938958707360862, 0.01903052064631957, 0.017594254937163375, 0.01615798922800718, 0.01615798922800718, 0.015439856373429085, 0.012567324955116697, 0.9497307001795332, 0.012567324955116697, 0.0118491921005386, 0.00933572710951526, 0.012567324955116697, 0.9375224416517056, 0.37881508078994613, 0.012567324955116697, 0.005026929982046679, 0.003231597845601436, 0.0017953321364452424, 0.000718132854578097, 0.0003590664272890485, 0.0010771992818671453, 0.0003590664272890485, 0.0003590664272890485, 0.0003590664272890485, 0.0003590664272890485, 0.0003590664272890485, 0.000718132854578097, 0.0010771992818671453, 0.001436265709156194, 0.002872531418312388, 0.005026929982046679, 0.16947935368043088, 0.14793536804308796, 0.5177737881508079, 0.518132854578097, 0.5062836624775583, 0.5052064631956912, 0.5120287253141831, 0.5134649910233393, 0.6718132854578097, 0.7640933572710952, 0.8136445242369839, 0.8394973070017954, 0.7964093357271095, 0.7016157989228007, 0.63016157989228, 0.022621184919210054, 0.022262118491921005, 0.021903052064631955, 0.02333931777378815, 0.02405745062836625, 0.022980251346499104, 0.026929982046678635, 0.026929982046678635, 0.02836624775583483, 0.03052064631956912, 0.03303411131059246, 0.03985637342908438, 0.04560143626570916, 0.05026929982046679, 0.05960502692998205, 0.08043087971274686, 0.11454219030520646, 0.18276481149012566, 0.38420107719928187, 0.8359066427289048], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/IBR.gap.json b/pfam_gap_rates/IBR.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..4c5169028220aaf0b07474874703e1fb86a250aa
--- /dev/null
+++ b/pfam_gap_rates/IBR.gap.json
@@ -0,0 +1 @@
+{"family": "IBR", "n_seqs": 4371, "length": 84, "gap_rates": [0.829558453443148, 0.6783344772363303, 0.6312056737588653, 0.6085563944177533, 0.5776710134980554, 0.5522763669640814, 0.5245939144360559, 0.4955387783115992, 0.4653397391901167, 0.4397163120567376, 0.42850606268588426, 0.33310455273392814, 0.28780599405170443, 0.26607183710821325, 0.8256691832532601, 0.19698009608785175, 0.11210249370853352, 0.08373369938229239, 0.01692976435598261, 0.006405856783344772, 0.0025165865934568747, 0.0022878059940517046, 0.0036604895904827272, 0.5147563486616334, 0.5106382978723404, 0.0022878059940517046, 0.001601464195836193, 0.001601464195836193, 0.0034317089910775567, 0.0022878059940517046, 0.0025165865934568747, 0.0036604895904827272, 0.017616106154198122, 0.017158544955387784, 0.017387325554792953, 0.015785861358956762, 0.8046213681079845, 0.9254175245939145, 0.690002287805994, 0.035232212308396245, 0.06794783802333562, 0.00983756577442233, 0.8265843056508808, 0.8641043239533288, 0.888583848089682, 0.9212994738046214, 0.9400594829558453, 0.9476092427362159, 0.9441775337451385, 0.931594600777854, 0.8949897048730268, 0.8771448181194235, 0.8448867536032945, 0.8112560054907344, 0.01555708075955159, 0.01029512697323267, 0.002059025394646534, 0.001601464195836193, 0.27590940288263555, 0.9247311827956989, 0.8949897048730268, 0.0013726835964310226, 0.001601464195836193, 0.002745367192862045, 0.0022878059940517046, 0.002745367192862045, 0.004118050789293068, 0.004575611988103409, 0.0061770761839396015, 0.008007320979180966, 0.01052390757263784, 0.037977579501258296, 0.07595515900251659, 0.12560054907343857, 0.8078242964996568, 0.931594600777854, 0.7918096545412949, 0.18988789750629145, 0.26996110729810113, 0.38595287119652255, 0.4188972775108671, 0.9492107069320521, 0.4484099748341341, 0.45161290322580644], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/IF-2.gap.json b/pfam_gap_rates/IF-2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..3d4eaa888b18264eb7af3bb3db3fbf818f9788f3
--- /dev/null
+++ b/pfam_gap_rates/IF-2.gap.json
@@ -0,0 +1 @@
+{"family": "IF-2", "n_seqs": 3024, "length": 116, "gap_rates": [0.8581349206349206, 0.5433201058201058, 0.47585978835978837, 0.42824074074074076, 0.40244708994708994, 0.35119047619047616, 0.314484126984127, 0.2847222222222222, 0.24173280423280424, 0.2728174603174603, 0.2208994708994709, 0.14649470899470898, 0.9308862433862434, 0.34226190476190477, 0.07175925925925926, 0.04894179894179894, 0.03273809523809524, 0.021825396825396824, 0.020833333333333332, 0.0205026455026455, 0.02017195767195767, 0.01917989417989418, 0.018187830687830687, 0.017526455026455025, 0.017195767195767195, 0.017195767195767195, 0.016865079365079364, 0.015873015873015872, 0.015873015873015872, 0.01521164021164021, 0.01521164021164021, 0.01521164021164021, 0.01521164021164021, 0.01488095238095238, 0.01488095238095238, 0.01488095238095238, 0.01455026455026455, 0.01455026455026455, 0.016534391534391533, 0.19014550264550265, 0.1875, 0.8677248677248677, 0.18055555555555555, 0.16203703703703703, 0.1583994708994709, 0.03736772486772487, 0.009259259259259259, 0.007605820105820105, 0.007605820105820105, 0.007605820105820105, 0.007605820105820105, 0.007605820105820105, 0.005621693121693121, 0.005291005291005291, 0.005291005291005291, 0.005291005291005291, 0.005621693121693121, 0.005291005291005291, 0.005291005291005291, 0.005291005291005291, 0.005621693121693121, 0.005291005291005291, 0.00496031746031746, 0.005291005291005291, 0.005291005291005291, 0.005291005291005291, 0.005291005291005291, 0.8740079365079365, 0.935515873015873, 0.9011243386243386, 0.8511904761904762, 0.005621693121693121, 0.004298941798941799, 0.8640873015873016, 0.9441137566137566, 0.9057539682539683, 0.8425925925925926, 0.0033068783068783067, 0.0033068783068783067, 0.0033068783068783067, 0.0033068783068783067, 0.0033068783068783067, 0.003968253968253968, 0.004298941798941799, 0.004298941798941799, 0.00496031746031746, 0.005291005291005291, 0.005291005291005291, 0.005621693121693121, 0.007275132275132275, 0.008597883597883597, 0.008597883597883597, 0.008597883597883597, 0.009259259259259259, 0.009259259259259259, 0.00958994708994709, 0.00992063492063492, 0.00958994708994709, 0.009259259259259259, 0.009259259259259259, 0.00958994708994709, 0.008597883597883597, 0.008928571428571428, 0.008928571428571428, 0.009259259259259259, 0.00958994708994709, 0.00992063492063492, 0.00992063492063492, 0.01025132275132275, 0.010582010582010581, 0.010582010582010581, 0.012896825396825396, 0.015542328042328041, 0.03009259259259259, 0.05489417989417989, 0.36673280423280424], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/IF4E.gap.json b/pfam_gap_rates/IF4E.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ce09f32029296ab0eff991c8c721bc13bf1b1d6b
--- /dev/null
+++ b/pfam_gap_rates/IF4E.gap.json
@@ -0,0 +1 @@
+{"family": "IF4E", "n_seqs": 1174, "length": 228, "gap_rates": [0.36712095400340716, 0.16524701873935263, 0.14991482112436116, 0.13969335604770017, 0.12947189097103917, 0.12265758091993186, 0.12180579216354344, 0.11925042589437819, 0.11925042589437819, 0.11925042589437819, 0.9071550255536627, 0.9395229982964225, 0.9471890971039182, 0.924190800681431, 0.8926746166950597, 0.32453151618398635, 0.2061328790459966, 0.17035775127768313, 0.16609880749574105, 0.1524701873935264, 0.7632027257240205, 0.9267461669505963, 0.8526405451448041, 0.5442930153321976, 0.32453151618398635, 0.17632027257240204, 0.15587734241908008, 0.1635434412265758, 0.08603066439522998, 0.8492333901192505, 0.8620102214650767, 0.8918228279386712, 0.9003407155025553, 0.9080068143100511, 0.9156729131175468, 0.9233390119250426, 0.9318568994889267, 0.9403747870528109, 0.948892674616695, 0.944633730834753, 0.9352640545144804, 0.9275979557069847, 0.9190800681431005, 0.9114139693356048, 0.9028960817717206, 0.8969335604770017, 0.8884156729131175, 0.8534923339011925, 0.8492333901192505, 0.08262350936967632, 0.08603066439522998, 0.0817717206132879, 0.07410562180579217, 0.07325383304940375, 0.07836456558773425, 0.07751277683134583, 0.06729131175468483, 0.065587734241908, 0.06388415672913117, 0.062180579216354344, 0.062180579216354344, 0.062180579216354344, 0.06388415672913117, 0.06303236797274275, 0.06132879045996593, 0.06132879045996593, 0.06132879045996593, 0.05877342419080068, 0.07325383304940375, 0.06132879045996593, 0.05792163543441227, 0.056218057921635436, 0.05792163543441227, 0.06047700170357751, 0.056218057921635436, 0.10477001703577513, 0.05706984667802385, 0.05706984667802385, 0.05281090289608177, 0.059625212947189095, 0.06303236797274275, 0.9463373083475298, 0.9471890971039182, 0.9471890971039182, 0.9437819420783645, 0.046848381601362864, 0.046848381601362864, 0.0434412265758092, 0.04258943781942078, 0.04258943781942078, 0.04258943781942078, 0.04258943781942078, 0.04258943781942078, 0.041737649063032366, 0.04003407155025554, 0.04003407155025554, 0.04003407155025554, 0.04003407155025554, 0.03747870528109029, 0.04088586030664395, 0.04088586030664395, 0.08517887563884156, 0.08432708688245315, 0.0434412265758092, 0.039182282793867124, 0.03833049403747871, 0.03833049403747871, 0.03833049403747871, 0.036626916524701875, 0.036626916524701875, 0.03747870528109029, 0.036626916524701875, 0.036626916524701875, 0.03833049403747871, 0.04088586030664395, 0.8449744463373083, 0.9080068143100511, 0.944633730834753, 0.9250425894378195, 0.8594548551959114, 0.8424190800681431, 0.039182282793867124, 0.06899488926746167, 0.9148211243611585, 0.8168654173764907, 0.4557069846678024, 0.06899488926746167, 0.044293015332197615, 0.8287904599659285, 0.8850085178875639, 0.8219761499148212, 0.041737649063032366, 0.041737649063032366, 0.036626916524701875, 0.03492333901192504, 0.03492333901192504, 0.03492333901192504, 0.034071550255536626, 0.03236797274275979, 0.030664395229982964, 0.030664395229982964, 0.03236797274275979, 0.03492333901192504, 0.036626916524701875, 0.03833049403747871, 0.03747870528109029, 0.036626916524701875, 0.036626916524701875, 0.04258943781942078, 0.046848381601362864, 0.05281090289608177, 0.778534923339012, 0.883304940374787, 0.9105621805792163, 0.9190800681431005, 0.9412265758091993, 0.9480408858603067, 0.9318568994889267, 0.9165247018739353, 0.9028960817717206, 0.7998296422487223, 0.6933560477001703, 0.4463373083475298, 0.08773424190800681, 0.04770017035775128, 0.039182282793867124, 0.039182282793867124, 0.039182282793867124, 0.039182282793867124, 0.04003407155025554, 0.04003407155025554, 0.04088586030664395, 0.041737649063032366, 0.04514480408858603, 0.054514480408858604, 0.049403747870528106, 0.04770017035775128, 0.049403747870528106, 0.05110732538330494, 0.05025553662691652, 0.05025553662691652, 0.05110732538330494, 0.05366269165247019, 0.054514480408858604, 0.054514480408858604, 0.05536626916524702, 0.06047700170357751, 0.9182282793867121, 0.9182282793867121, 0.9233390119250426, 0.9318568994889267, 0.9403747870528109, 0.9437819420783645, 0.9454855195911414, 0.944633730834753, 0.9429301533219762, 0.934412265758092, 0.9284497444633731, 0.9207836456558773, 0.9182282793867121, 0.9182282793867121, 0.24275979557069846, 0.1575809199318569, 0.10817717206132879, 0.09540034071550256, 0.09625212947189098, 0.1030664395229983, 0.10902896081771721, 0.11499148211243612, 0.1201022146507666, 0.14310051107325383, 0.1465076660988075, 0.1524701873935264, 0.1524701873935264, 0.16695059625212946, 0.18824531516183987, 0.2010221465076661, 0.2282793867120954, 0.2836456558773424, 0.3330494037478705, 0.358603066439523, 0.3850085178875639, 0.4335604770017036, 0.48637137989778534, 0.5383304940374787, 0.5689948892674617, 0.6320272572402045, 0.6839863713798978], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/IFT20.gap.json b/pfam_gap_rates/IFT20.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b4be098c1c10f0daf25d8b3253a77dddcc4dd4de
--- /dev/null
+++ b/pfam_gap_rates/IFT20.gap.json
@@ -0,0 +1 @@
+{"family": "IFT20", "n_seqs": 126, "length": 119, "gap_rates": [0.4126984126984127, 0.09523809523809523, 0.09523809523809523, 0.09523809523809523, 0.09523809523809523, 0.09523809523809523, 0.10317460317460317, 0.07936507936507936, 0.07936507936507936, 0.07936507936507936, 0.07936507936507936, 0.07936507936507936, 0.07936507936507936, 0.07936507936507936, 0.07936507936507936, 0.06349206349206349, 0.06349206349206349, 0.06349206349206349, 0.06349206349206349, 0.06349206349206349, 0.05555555555555555, 0.05555555555555555, 0.05555555555555555, 0.047619047619047616, 0.047619047619047616, 0.047619047619047616, 0.047619047619047616, 0.047619047619047616, 0.047619047619047616, 0.047619047619047616, 0.047619047619047616, 0.047619047619047616, 0.03968253968253968, 0.047619047619047616, 0.05555555555555555, 0.05555555555555555, 0.05555555555555555, 0.06349206349206349, 0.06349206349206349, 0.06349206349206349, 0.06349206349206349, 0.05555555555555555, 0.05555555555555555, 0.047619047619047616, 0.047619047619047616, 0.047619047619047616, 0.047619047619047616, 0.047619047619047616, 0.047619047619047616, 0.03968253968253968, 0.047619047619047616, 0.047619047619047616, 0.047619047619047616, 0.047619047619047616, 0.047619047619047616, 0.047619047619047616, 0.05555555555555555, 0.05555555555555555, 0.05555555555555555, 0.05555555555555555, 0.05555555555555555, 0.047619047619047616, 0.06349206349206349, 0.06349206349206349, 0.06349206349206349, 0.06349206349206349, 0.06349206349206349, 0.07142857142857142, 0.09523809523809523, 0.09523809523809523, 0.07142857142857142, 0.07142857142857142, 0.07142857142857142, 0.07142857142857142, 0.07142857142857142, 0.07142857142857142, 0.07142857142857142, 0.07142857142857142, 0.07142857142857142, 0.07142857142857142, 0.07142857142857142, 0.07936507936507936, 0.07936507936507936, 0.07936507936507936, 0.07936507936507936, 0.07936507936507936, 0.09523809523809523, 0.09523809523809523, 0.09523809523809523, 0.09523809523809523, 0.09523809523809523, 0.09523809523809523, 0.09523809523809523, 0.09523809523809523, 0.09523809523809523, 0.09523809523809523, 0.09523809523809523, 0.10317460317460317, 0.1111111111111111, 0.1111111111111111, 0.11904761904761904, 0.12698412698412698, 0.12698412698412698, 0.12698412698412698, 0.12698412698412698, 0.12698412698412698, 0.12698412698412698, 0.12698412698412698, 0.12698412698412698, 0.12698412698412698, 0.1349206349206349, 0.15079365079365079, 0.15873015873015872, 0.15873015873015872, 0.16666666666666666, 0.18253968253968253, 0.19047619047619047, 0.21428571428571427, 0.2777777777777778], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/INTS5_C.gap.json b/pfam_gap_rates/INTS5_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..05250f85f2733d851db7a3d4a2723e1aa9d8c8ee
--- /dev/null
+++ b/pfam_gap_rates/INTS5_C.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/IRF-3.gap.json b/pfam_gap_rates/IRF-3.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..5834c6cd073e3362424d74862479d0a4608d4211
--- /dev/null
+++ b/pfam_gap_rates/IRF-3.gap.json
@@ -0,0 +1 @@
+{"family": "IRF-3", "n_seqs": 185, "length": 202, "gap_rates": [0.8918918918918919, 0.41621621621621624, 0.2, 0.10810810810810811, 0.10810810810810811, 0.0972972972972973, 0.0972972972972973, 0.0918918918918919, 0.0918918918918919, 0.0918918918918919, 0.0918918918918919, 0.0918918918918919, 0.0918918918918919, 0.08648648648648649, 0.08648648648648649, 0.08648648648648649, 0.8702702702702703, 0.08108108108108109, 0.08108108108108109, 0.08108108108108109, 0.08108108108108109, 0.08108108108108109, 0.08108108108108109, 0.08108108108108109, 0.08648648648648649, 0.2594594594594595, 0.08648648648648649, 0.08108108108108109, 0.08108108108108109, 0.08108108108108109, 0.08108108108108109, 0.7513513513513513, 0.7513513513513513, 0.5891891891891892, 0.10270270270270271, 0.12432432432432433, 0.11351351351351352, 0.14054054054054055, 0.13513513513513514, 0.14054054054054055, 0.14054054054054055, 0.2648648648648649, 0.42162162162162165, 0.372972972972973, 0.3567567567567568, 0.2648648648648649, 0.23783783783783785, 0.8648648648648649, 0.8756756756756757, 0.9027027027027027, 0.9081081081081082, 0.9135135135135135, 0.9081081081081082, 0.8918918918918919, 0.8756756756756757, 0.8594594594594595, 0.05945945945945946, 0.05945945945945946, 0.05405405405405406, 0.05945945945945946, 0.05405405405405406, 0.05405405405405406, 0.05405405405405406, 0.05405405405405406, 0.05405405405405406, 0.05405405405405406, 0.05405405405405406, 0.14054054054054055, 0.8864864864864865, 0.2, 0.1945945945945946, 0.9459459459459459, 0.9405405405405406, 0.16216216216216217, 0.13513513513513514, 0.15675675675675677, 0.1783783783783784, 0.08108108108108109, 0.07567567567567568, 0.05945945945945946, 0.05945945945945946, 0.05945945945945946, 0.05945945945945946, 0.05945945945945946, 0.05405405405405406, 0.05405405405405406, 0.05405405405405406, 0.08108108108108109, 0.08648648648648649, 0.04864864864864865, 0.04864864864864865, 0.04864864864864865, 0.043243243243243246, 0.043243243243243246, 0.043243243243243246, 0.043243243243243246, 0.043243243243243246, 0.043243243243243246, 0.043243243243243246, 0.9243243243243243, 0.043243243243243246, 0.043243243243243246, 0.043243243243243246, 0.043243243243243246, 0.043243243243243246, 0.043243243243243246, 0.043243243243243246, 0.043243243243243246, 0.043243243243243246, 0.043243243243243246, 0.043243243243243246, 0.043243243243243246, 0.043243243243243246, 0.04864864864864865, 0.043243243243243246, 0.043243243243243246, 0.043243243243243246, 0.04864864864864865, 0.04864864864864865, 0.04864864864864865, 0.05945945945945946, 0.0972972972972973, 0.0972972972972973, 0.8, 0.8756756756756757, 0.7243243243243244, 0.15675675675675677, 0.07567567567567568, 0.07027027027027027, 0.8864864864864865, 0.05945945945945946, 0.05945945945945946, 0.05945945945945946, 0.05945945945945946, 0.05945945945945946, 0.05945945945945946, 0.05945945945945946, 0.05945945945945946, 0.04864864864864865, 0.04864864864864865, 0.04864864864864865, 0.04864864864864865, 0.05405405405405406, 0.05405405405405406, 0.05945945945945946, 0.06486486486486487, 0.06486486486486487, 0.07027027027027027, 0.05945945945945946, 0.05945945945945946, 0.06486486486486487, 0.07027027027027027, 0.07027027027027027, 0.0918918918918919, 0.08108108108108109, 0.6378378378378379, 0.08108108108108109, 0.08648648648648649, 0.08108108108108109, 0.08108108108108109, 0.08108108108108109, 0.08108108108108109, 0.08108108108108109, 0.08108108108108109, 0.08648648648648649, 0.08648648648648649, 0.08648648648648649, 0.08648648648648649, 0.08648648648648649, 0.0918918918918919, 0.0918918918918919, 0.0918918918918919, 0.0972972972972973, 0.10810810810810811, 0.11351351351351352, 0.14054054054054055, 0.8918918918918919, 0.2594594594594595, 0.11351351351351352, 0.10810810810810811, 0.10810810810810811, 0.10810810810810811, 0.10270270270270271, 0.10270270270270271, 0.10270270270270271, 0.10270270270270271, 0.10810810810810811, 0.10810810810810811, 0.11351351351351352, 0.11351351351351352, 0.12432432432432433, 0.14594594594594595, 0.17297297297297298, 0.1837837837837838, 0.1837837837837838, 0.1945945945945946, 0.2, 0.20540540540540542, 0.21081081081081082, 0.25405405405405407, 0.32972972972972975, 0.43783783783783786], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/ISG65-75.gap.json b/pfam_gap_rates/ISG65-75.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..eb81361ed80b609ac94fb086abec73a27c713942
--- /dev/null
+++ b/pfam_gap_rates/ISG65-75.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Ima1_N.gap.json b/pfam_gap_rates/Ima1_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..eba1ac3a49d606a753f45236d80ca7dfd09edb13
--- /dev/null
+++ b/pfam_gap_rates/Ima1_N.gap.json
@@ -0,0 +1 @@
+{"family": "Ima1_N", "n_seqs": 192, "length": 149, "gap_rates": [0.3333333333333333, 0.21354166666666666, 0.1875, 0.1875, 0.1875, 0.1875, 0.1875, 0.1875, 0.1875, 0.18229166666666666, 0.18229166666666666, 0.21875, 0.21354166666666666, 0.171875, 0.16666666666666666, 0.15625, 0.16666666666666666, 0.14583333333333334, 0.15104166666666666, 0.9375, 0.9427083333333334, 0.703125, 0.13020833333333334, 0.13020833333333334, 0.13020833333333334, 0.13020833333333334, 0.13541666666666666, 0.13020833333333334, 0.13020833333333334, 0.13020833333333334, 0.125, 0.125, 0.11979166666666667, 0.11458333333333333, 0.109375, 0.09375, 0.08854166666666667, 0.09375, 0.09895833333333333, 0.09895833333333333, 0.09895833333333333, 0.09375, 0.40625, 0.3854166666666667, 0.09375, 0.09375, 0.08854166666666667, 0.07291666666666667, 0.06770833333333333, 0.06770833333333333, 0.06770833333333333, 0.06770833333333333, 0.06770833333333333, 0.234375, 0.1875, 0.21875, 0.21875, 0.203125, 0.24479166666666666, 0.22916666666666666, 0.24479166666666666, 0.23958333333333334, 0.234375, 0.2604166666666667, 0.3177083333333333, 0.3333333333333333, 0.4114583333333333, 0.4583333333333333, 0.8697916666666666, 0.8958333333333334, 0.9270833333333334, 0.9427083333333334, 0.9479166666666666, 0.9322916666666666, 0.9010416666666666, 0.8854166666666666, 0.8697916666666666, 0.703125, 0.5364583333333334, 0.3645833333333333, 0.2604166666666667, 0.057291666666666664, 0.057291666666666664, 0.046875, 0.046875, 0.046875, 0.046875, 0.046875, 0.046875, 0.046875, 0.046875, 0.052083333333333336, 0.052083333333333336, 0.046875, 0.046875, 0.041666666666666664, 0.041666666666666664, 0.041666666666666664, 0.041666666666666664, 0.041666666666666664, 0.041666666666666664, 0.036458333333333336, 0.03125, 0.03125, 0.03125, 0.03125, 0.03125, 0.03125, 0.041666666666666664, 0.03125, 0.3854166666666667, 0.515625, 0.5989583333333334, 0.0625, 0.03125, 0.052083333333333336, 0.078125, 0.08333333333333333, 0.10416666666666667, 0.46875, 0.4583333333333333, 0.453125, 0.4427083333333333, 0.4270833333333333, 0.4010416666666667, 0.4010416666666667, 0.078125, 0.078125, 0.078125, 0.078125, 0.08333333333333333, 0.08333333333333333, 0.08333333333333333, 0.08333333333333333, 0.08333333333333333, 0.08333333333333333, 0.08333333333333333, 0.08333333333333333, 0.08333333333333333, 0.4947916666666667, 0.08333333333333333, 0.08333333333333333, 0.08333333333333333, 0.08333333333333333, 0.08333333333333333, 0.08333333333333333, 0.11979166666666667, 0.2708333333333333, 0.3958333333333333], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Imp-YgjV.gap.json b/pfam_gap_rates/Imp-YgjV.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..4ed06788317631965320bb390df647bd043cc97a
--- /dev/null
+++ b/pfam_gap_rates/Imp-YgjV.gap.json
@@ -0,0 +1 @@
+{"family": "Imp-YgjV", "n_seqs": 169, "length": 169, "gap_rates": [0.8461538461538461, 0.5562130177514792, 0.48520710059171596, 0.47928994082840237, 0.46745562130177515, 0.46153846153846156, 0.4437869822485207, 0.4437869822485207, 0.4378698224852071, 0.4378698224852071, 0.4378698224852071, 0.4378698224852071, 0.4319526627218935, 0.4260355029585799, 0.4260355029585799, 0.42011834319526625, 0.42011834319526625, 0.42011834319526625, 0.42011834319526625, 0.42011834319526625, 0.42011834319526625, 0.42011834319526625, 0.42011834319526625, 0.42011834319526625, 0.42011834319526625, 0.41420118343195267, 0.41420118343195267, 0.41420118343195267, 0.40828402366863903, 0.40236686390532544, 0.40236686390532544, 0.40236686390532544, 0.40236686390532544, 0.40236686390532544, 0.40236686390532544, 0.40236686390532544, 0.40236686390532544, 0.40236686390532544, 0.40236686390532544, 0.40236686390532544, 0.40236686390532544, 0.3905325443786982, 0.3905325443786982, 0.3905325443786982, 0.3905325443786982, 0.3905325443786982, 0.3905325443786982, 0.3905325443786982, 0.3905325443786982, 0.3905325443786982, 0.3905325443786982, 0.3905325443786982, 0.3905325443786982, 0.3905325443786982, 0.3905325443786982, 0.3905325443786982, 0.38461538461538464, 0.38461538461538464, 0.38461538461538464, 0.38461538461538464, 0.38461538461538464, 0.38461538461538464, 0.38461538461538464, 0.38461538461538464, 0.38461538461538464, 0.38461538461538464, 0.38461538461538464, 0.38461538461538464, 0.834319526627219, 0.8994082840236687, 0.9289940828402367, 0.8520710059171598, 0.7337278106508875, 0.3905325443786982, 0.40828402366863903, 0.40236686390532544, 0.3905325443786982, 0.38461538461538464, 0.378698224852071, 0.378698224852071, 0.378698224852071, 0.378698224852071, 0.378698224852071, 0.38461538461538464, 0.378698224852071, 0.3668639053254438, 0.8520710059171598, 0.9349112426035503, 0.893491124260355, 0.8284023668639053, 0.3727810650887574, 0.3727810650887574, 0.3668639053254438, 0.3668639053254438, 0.3431952662721893, 0.33136094674556216, 0.30177514792899407, 0.23076923076923078, 0.10059171597633136, 0.03550295857988166, 0.029585798816568046, 0.01775147928994083, 0.01775147928994083, 0.011834319526627219, 0.011834319526627219, 0.011834319526627219, 0.011834319526627219, 0.01775147928994083, 0.01775147928994083, 0.01775147928994083, 0.01775147928994083, 0.01775147928994083, 0.01775147928994083, 0.01775147928994083, 0.01775147928994083, 0.01775147928994083, 0.01775147928994083, 0.01775147928994083, 0.01775147928994083, 0.01775147928994083, 0.01775147928994083, 0.01775147928994083, 0.01775147928994083, 0.023668639053254437, 0.01775147928994083, 0.01775147928994083, 0.9467455621301775, 0.01775147928994083, 0.01775147928994083, 0.01775147928994083, 0.01775147928994083, 0.01775147928994083, 0.01775147928994083, 0.01775147928994083, 0.01775147928994083, 0.01775147928994083, 0.01775147928994083, 0.023668639053254437, 0.023668639053254437, 0.023668639053254437, 0.023668639053254437, 0.023668639053254437, 0.023668639053254437, 0.023668639053254437, 0.023668639053254437, 0.023668639053254437, 0.023668639053254437, 0.023668639053254437, 0.023668639053254437, 0.023668639053254437, 0.023668639053254437, 0.023668639053254437, 0.023668639053254437, 0.023668639053254437, 0.023668639053254437, 0.023668639053254437, 0.023668639053254437, 0.023668639053254437, 0.023668639053254437, 0.023668639053254437, 0.023668639053254437, 0.03550295857988166, 0.07692307692307693, 0.09467455621301775, 0.11242603550295859, 0.16568047337278108, 0.3254437869822485, 0.5325443786982249, 0.893491124260355], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Ins145_P3_rec.gap.json b/pfam_gap_rates/Ins145_P3_rec.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..9296667e7d896a735e6843fece737cbd464d7de3
--- /dev/null
+++ b/pfam_gap_rates/Ins145_P3_rec.gap.json
@@ -0,0 +1 @@
+{"family": "Ins145_P3_rec", "n_seqs": 399, "length": 289, "gap_rates": [0.7268170426065163, 0.6015037593984962, 0.49874686716791977, 0.44611528822055135, 0.42105263157894735, 0.41353383458646614, 0.40100250626566414, 0.3634085213032581, 0.3634085213032581, 0.3433583959899749, 0.3408521303258145, 0.3408521303258145, 0.3408521303258145, 0.3383458646616541, 0.3383458646616541, 0.3383458646616541, 0.3383458646616541, 0.39849624060150374, 0.39598997493734334, 0.3558897243107769, 0.7543859649122807, 0.7969924812030075, 0.9373433583959899, 0.9448621553884712, 0.9373433583959899, 0.8521303258145363, 0.7794486215538847, 0.6867167919799498, 0.3258145363408521, 0.3182957393483709, 0.3182957393483709, 0.3132832080200501, 0.3107769423558897, 0.3082706766917293, 0.3157894736842105, 0.2882205513784461, 0.2857142857142857, 0.2807017543859649, 0.2731829573934837, 0.2731829573934837, 0.2656641604010025, 0.2656641604010025, 0.2581453634085213, 0.2556390977443609, 0.2531328320802005, 0.2506265664160401, 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\ No newline at end of file
diff --git a/pfam_gap_rates/Ion_trans_N.gap.json b/pfam_gap_rates/Ion_trans_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..feda589dec5a80716c96ace8b4a3e3a7d2c4c2b6
--- /dev/null
+++ b/pfam_gap_rates/Ion_trans_N.gap.json
@@ -0,0 +1 @@
+{"family": "Ion_trans_N", "n_seqs": 117, "length": 44, "gap_rates": [0.38461538461538464, 0.1794871794871795, 0.1282051282051282, 0.11965811965811966, 0.1111111111111111, 0.1111111111111111, 0.1111111111111111, 0.10256410256410256, 0.06837606837606838, 0.05128205128205128, 0.042735042735042736, 0.042735042735042736, 0.042735042735042736, 0.03418803418803419, 0.02564102564102564, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.008547008547008548, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.008547008547008548, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.008547008547008548, 0.008547008547008548, 0.03418803418803419], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Iron_permease.gap.json b/pfam_gap_rates/Iron_permease.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..bef7b01299167bfcd4357eb59563d5b0f104cf61
--- /dev/null
+++ b/pfam_gap_rates/Iron_permease.gap.json
@@ -0,0 +1 @@
+{"family": "Iron_permease", "n_seqs": 231, "length": 127, "gap_rates": [0.47186147186147187, 0.38095238095238093, 0.2554112554112554, 0.2077922077922078, 0.18181818181818182, 0.14285714285714285, 0.12987012987012986, 0.09956709956709957, 0.09523809523809523, 0.08225108225108226, 0.06926406926406926, 0.05194805194805195, 0.05627705627705628, 0.05627705627705628, 0.05627705627705628, 0.05627705627705628, 0.05194805194805195, 0.04329004329004329, 0.04329004329004329, 0.03896103896103896, 0.03896103896103896, 0.03896103896103896, 0.030303030303030304, 0.025974025974025976, 0.025974025974025976, 0.025974025974025976, 0.025974025974025976, 0.030303030303030304, 0.025974025974025976, 0.025974025974025976, 0.025974025974025976, 0.025974025974025976, 0.025974025974025976, 0.030303030303030304, 0.025974025974025976, 0.025974025974025976, 0.030303030303030304, 0.025974025974025976, 0.025974025974025976, 0.025974025974025976, 0.025974025974025976, 0.025974025974025976, 0.025974025974025976, 0.025974025974025976, 0.025974025974025976, 0.025974025974025976, 0.021645021645021644, 0.021645021645021644, 0.021645021645021644, 0.021645021645021644, 0.021645021645021644, 0.021645021645021644, 0.8051948051948052, 0.021645021645021644, 0.030303030303030304, 0.025974025974025976, 0.021645021645021644, 0.017316017316017316, 0.025974025974025976, 0.021645021645021644, 0.05627705627705628, 0.030303030303030304, 0.03463203463203463, 0.05194805194805195, 0.06926406926406926, 0.06060606060606061, 0.05194805194805195, 0.0735930735930736, 0.08225108225108226, 0.08658008658008658, 0.10822510822510822, 0.24242424242424243, 0.14285714285714285, 0.15151515151515152, 0.16017316017316016, 0.16883116883116883, 0.18614718614718614, 0.19913419913419914, 0.2077922077922078, 0.23809523809523808, 0.2857142857142857, 0.3116883116883117, 0.341991341991342, 0.354978354978355, 0.48917748917748916, 0.38961038961038963, 0.3939393939393939, 0.3939393939393939, 0.3939393939393939, 0.39826839826839827, 0.39826839826839827, 0.4069264069264069, 0.4069264069264069, 0.4025974025974026, 0.4025974025974026, 0.4025974025974026, 0.4025974025974026, 0.4025974025974026, 0.4069264069264069, 0.4069264069264069, 0.4069264069264069, 0.4069264069264069, 0.4069264069264069, 0.41125541125541126, 0.41125541125541126, 0.41125541125541126, 0.41125541125541126, 0.4199134199134199, 0.42424242424242425, 0.42857142857142855, 0.43722943722943725, 0.45021645021645024, 0.46320346320346323, 0.48917748917748916, 0.5021645021645021, 0.5238095238095238, 0.5454545454545454, 0.5844155844155844, 0.6190476190476191, 0.6406926406926406, 0.683982683982684, 0.7489177489177489, 0.7705627705627706, 0.7748917748917749, 0.8095238095238095, 0.8354978354978355, 0.8874458874458875], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Iso_dh.gap.json b/pfam_gap_rates/Iso_dh.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..8069f6dac9cb038a519495a80012f13c85814c10
--- /dev/null
+++ b/pfam_gap_rates/Iso_dh.gap.json
@@ -0,0 +1 @@
+{"family": "Iso_dh", "n_seqs": 5000, "length": 433, "gap_rates": [0.6066, 0.1962, 0.1432, 0.1242, 0.1094, 0.1012, 0.0804, 0.0792, 0.0774, 0.0762, 0.0756, 0.0752, 0.0746, 0.0708, 0.0694, 0.069, 0.069, 0.0688, 0.0684, 0.068, 0.0678, 0.0678, 0.0674, 0.0674, 0.067, 0.0668, 0.3054, 0.2962, 0.1892, 0.2254, 0.8808, 0.8962, 0.8238, 0.1962, 0.1434, 0.0666, 0.0652, 0.0644, 0.064, 0.064, 0.0646, 0.064, 0.0644, 0.065, 0.0646, 0.0672, 0.0718, 0.0768, 0.0766, 0.0764, 0.1176, 0.0842, 0.9494, 0.9282, 0.0742, 0.0712, 0.0692, 0.079, 0.0624, 0.0606, 0.0592, 0.059, 0.0588, 0.058, 0.0578, 0.0576, 0.0578, 0.0578, 0.0578, 0.0576, 0.057, 0.0568, 0.0568, 0.0568, 0.0572, 0.0566, 0.056, 0.0564, 0.0574, 0.0576, 0.648, 0.7352, 0.924, 0.7174, 0.5544, 0.2164, 0.199, 0.069, 0.0682, 0.067, 0.068, 0.0608, 0.0658, 0.7914, 0.4074, 0.3542, 0.068, 0.066, 0.0544, 0.0536, 0.0538, 0.0532, 0.0524, 0.053, 0.8178, 0.0534, 0.0534, 0.0534, 0.0534, 0.0534, 0.0532, 0.0532, 0.0534, 0.053, 0.053, 0.053, 0.8264, 0.4628, 0.5088, 0.1656, 0.1338, 0.1216, 0.0972, 0.086, 0.088, 0.085, 0.099, 0.3082, 0.471, 0.4418, 0.271, 0.2048, 0.1168, 0.7486, 0.052, 0.0516, 0.051, 0.0504, 0.0502, 0.0502, 0.05, 0.05, 0.05, 0.05, 0.0506, 0.051, 0.0516, 0.0518, 0.0522, 0.0524, 0.0524, 0.0526, 0.0528, 0.053, 0.0538, 0.054, 0.0544, 0.676, 0.6782, 0.691, 0.6928, 0.693, 0.694, 0.6948, 0.7142, 0.7922, 0.8574, 0.9106, 0.808, 0.7216, 0.7008, 0.694, 0.6934, 0.6928, 0.6926, 0.6906, 0.6764, 0.6754, 0.0762, 0.6094, 0.8646, 0.4464, 0.3312, 0.2984, 0.2798, 0.072, 0.0542, 0.0538, 0.0532, 0.053, 0.052, 0.0508, 0.0506, 0.0506, 0.0536, 0.05, 0.0486, 0.8442, 0.0484, 0.0486, 0.049, 0.0488, 0.0486, 0.0488, 0.0482, 0.0482, 0.0482, 0.048, 0.048, 0.0482, 0.0484, 0.0484, 0.0482, 0.9194, 0.5216, 0.0506, 0.0504, 0.0498, 0.0488, 0.0488, 0.049, 0.0494, 0.0494, 0.049, 0.0492, 0.0488, 0.0494, 0.049, 0.049, 0.0486, 0.049, 0.0488, 0.3466, 0.0476, 0.048, 0.0484, 0.0488, 0.0492, 0.0486, 0.0486, 0.0484, 0.048, 0.0482, 0.0486, 0.573, 0.6976, 0.708, 0.7166, 0.8946, 0.8958, 0.8976, 0.8998, 0.9068, 0.912, 0.9442, 0.9142, 0.9078, 0.9042, 0.8992, 0.8964, 0.895, 0.8912, 0.7094, 0.702, 0.6822, 0.0578, 0.0492, 0.0494, 0.0494, 0.0492, 0.0488, 0.0484, 0.0482, 0.0484, 0.048, 0.0478, 0.0478, 0.0478, 0.0476, 0.0466, 0.0462, 0.0456, 0.0454, 0.0448, 0.045, 0.0446, 0.0446, 0.0444, 0.212, 0.133, 0.0452, 0.0598, 0.881, 0.0446, 0.044, 0.044, 0.0434, 0.0432, 0.0436, 0.0434, 0.0442, 0.0444, 0.044, 0.0444, 0.0444, 0.0454, 0.045, 0.045, 0.0452, 0.0454, 0.0456, 0.0456, 0.0462, 0.0462, 0.0466, 0.0466, 0.047, 0.0474, 0.0464, 0.0462, 0.0464, 0.0462, 0.046, 0.046, 0.0462, 0.3654, 0.8072, 0.9228, 0.9266, 0.9212, 0.6192, 0.0772, 0.0468, 0.0456, 0.0458, 0.0458, 0.0458, 0.0458, 0.0466, 0.0472, 0.0476, 0.048, 0.0482, 0.049, 0.0518, 0.048, 0.0484, 0.0488, 0.0514, 0.0466, 0.0462, 0.046, 0.8048, 0.815, 0.8154, 0.815, 0.8062, 0.8036, 0.0458, 0.0456, 0.0456, 0.0456, 0.0456, 0.0456, 0.0454, 0.0458, 0.0456, 0.0454, 0.0456, 0.045, 0.0452, 0.0452, 0.0452, 0.0452, 0.5498, 0.0476, 0.0474, 0.047, 0.0478, 0.0474, 0.0476, 0.0472, 0.802, 0.8044, 0.8134, 0.8054, 0.8022, 0.8012, 0.0472, 0.0474, 0.0474, 0.0476, 0.0476, 0.0476, 0.0482, 0.0486, 0.0516, 0.0534, 0.0548, 0.0562, 0.0616, 0.7074, 0.0752, 0.0836, 0.0912, 0.0908, 0.0958, 0.0982, 0.0984, 0.1, 0.102, 0.105, 0.1116, 0.6984, 0.874, 0.93, 0.936, 0.9074, 0.8156, 0.6748, 0.4828, 0.4652, 0.4524, 0.4514, 0.1502, 0.1508, 0.1556, 0.163, 0.1688, 0.1954, 0.2312, 0.2968, 0.4414], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Jnk-SapK_ap_N.gap.json b/pfam_gap_rates/Jnk-SapK_ap_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..9dea39d6b3716b5fb76718beabe45c1560812c81
--- /dev/null
+++ b/pfam_gap_rates/Jnk-SapK_ap_N.gap.json
@@ -0,0 +1 @@
+{"family": "Jnk-SapK_ap_N", "n_seqs": 224, "length": 160, "gap_rates": [0.16071428571428573, 0.14285714285714285, 0.13839285714285715, 0.13839285714285715, 0.13839285714285715, 0.13839285714285715, 0.13839285714285715, 0.13839285714285715, 0.13839285714285715, 0.13839285714285715, 0.13839285714285715, 0.13392857142857142, 0.13392857142857142, 0.13392857142857142, 0.13392857142857142, 0.13839285714285715, 0.13392857142857142, 0.13392857142857142, 0.13392857142857142, 0.13392857142857142, 0.13392857142857142, 0.13392857142857142, 0.13392857142857142, 0.13839285714285715, 0.13392857142857142, 0.13392857142857142, 0.13392857142857142, 0.12053571428571429, 0.12053571428571429, 0.10714285714285714, 0.09375, 0.09821428571428571, 0.09821428571428571, 0.09821428571428571, 0.09821428571428571, 0.08928571428571429, 0.08482142857142858, 0.08482142857142858, 0.08482142857142858, 0.08482142857142858, 0.08482142857142858, 0.08482142857142858, 0.08482142857142858, 0.08928571428571429, 0.08482142857142858, 0.14732142857142858, 0.08482142857142858, 0.08482142857142858, 0.08035714285714286, 0.08928571428571429, 0.08928571428571429, 0.08928571428571429, 0.08928571428571429, 0.08928571428571429, 0.08928571428571429, 0.08928571428571429, 0.08928571428571429, 0.08928571428571429, 0.09375, 0.09821428571428571, 0.09821428571428571, 0.10267857142857142, 0.10267857142857142, 0.09821428571428571, 0.12053571428571429, 0.11607142857142858, 0.10714285714285714, 0.09375, 0.09821428571428571, 0.10267857142857142, 0.09821428571428571, 0.10714285714285714, 0.10714285714285714, 0.10267857142857142, 0.10267857142857142, 0.09821428571428571, 0.09375, 0.09821428571428571, 0.07142857142857142, 0.08035714285714286, 0.09375, 0.09375, 0.09375, 0.09375, 0.09375, 0.09375, 0.08928571428571429, 0.08928571428571429, 0.08928571428571429, 0.08928571428571429, 0.08928571428571429, 0.08928571428571429, 0.08928571428571429, 0.08928571428571429, 0.08928571428571429, 0.08928571428571429, 0.08928571428571429, 0.08928571428571429, 0.08928571428571429, 0.08928571428571429, 0.08928571428571429, 0.08928571428571429, 0.08928571428571429, 0.08928571428571429, 0.08928571428571429, 0.08928571428571429, 0.08928571428571429, 0.08928571428571429, 0.08928571428571429, 0.41517857142857145, 0.40625, 0.41517857142857145, 0.4017857142857143, 0.39732142857142855, 0.39285714285714285, 0.3794642857142857, 0.32142857142857145, 0.3169642857142857, 0.33482142857142855, 0.15178571428571427, 0.15625, 0.16071428571428573, 0.16964285714285715, 0.16964285714285715, 0.17410714285714285, 0.17410714285714285, 0.17857142857142858, 0.18303571428571427, 0.19196428571428573, 0.2767857142857143, 0.27232142857142855, 0.24107142857142858, 0.22767857142857142, 0.21428571428571427, 0.21875, 0.21428571428571427, 0.21875, 0.20535714285714285, 0.8705357142857143, 0.8794642857142857, 0.8794642857142857, 0.8616071428571429, 0.20982142857142858, 0.22321428571428573, 0.22767857142857142, 0.23214285714285715, 0.23214285714285715, 0.23660714285714285, 0.24107142857142858, 0.2544642857142857, 0.2544642857142857, 0.2544642857142857, 0.2544642857142857, 0.25892857142857145, 0.26785714285714285, 0.27232142857142855, 0.27232142857142855, 0.28125, 0.3080357142857143, 0.7678571428571429], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/K-box.gap.json b/pfam_gap_rates/K-box.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..cdf518fb662c6035345bee2b588b4023e5185b4b
--- /dev/null
+++ b/pfam_gap_rates/K-box.gap.json
@@ -0,0 +1 @@
+{"family": "K-box", "n_seqs": 1017, "length": 89, "gap_rates": [0.8377581120943953, 0.6823992133726647, 0.5093411996066863, 0.3834808259587021, 0.32645034414945917, 0.288102261553589, 0.2359882005899705, 0.18977384464110128, 0.16912487708947885, 0.13470993117010815, 0.10521140609636184, 0.09832841691248771, 0.09144542772861357, 0.08456243854473942, 0.08161258603736479, 0.07866273352999016, 0.07866273352999016, 0.0776794493608653, 0.07571288102261553, 0.06981317600786627, 0.06784660766961652, 0.063913470993117, 0.06096361848574238, 0.058997050147492625, 0.05801376597836775, 0.05211406096361849, 0.04523107177974434, 0.04424778761061947, 0.035398230088495575, 0.01671583087512291, 0.01671583087512291, 0.01966568338249754, 0.014749262536873156, 0.00983284169124877, 0.00983284169124877, 0.00983284169124877, 0.008849557522123894, 0.008849557522123894, 0.0029498525073746312, 0.0019665683382497543, 0.0019665683382497543, 0.0019665683382497543, 0.0019665683382497543, 0.0019665683382497543, 0.0019665683382497543, 0.0019665683382497543, 0.0019665683382497543, 0.0029498525073746312, 0.0029498525073746312, 0.003933136676499509, 0.0019665683382497543, 0.0019665683382497543, 0.0019665683382497543, 0.0019665683382497543, 0.0029498525073746312, 0.004916420845624385, 0.0058997050147492625, 0.007866273352999017, 0.007866273352999017, 0.0058997050147492625, 0.017699115044247787, 0.024582104228121928, 0.029498525073746312, 0.03146509341199607, 0.0776794493608653, 0.08161258603736479, 0.08161258603736479, 0.08456243854473942, 0.051130776794493606, 0.05309734513274336, 0.05506391347099312, 0.05703048180924287, 0.058997050147492625, 0.06293018682399214, 0.07866273352999016, 0.08161258603736479, 0.08849557522123894, 0.09341199606686332, 0.10422812192723697, 0.10816125860373647, 0.11209439528023599, 0.11799410029498525, 0.1288102261553589, 0.13176007866273354, 0.13470993117010815, 0.13962635201573254, 0.15732546705998032, 0.19567354965585054, 0.2920353982300885], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/KGG.gap.json b/pfam_gap_rates/KGG.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..4bc22ecbc21a73a72132c9624e18e9afe968fa0a
--- /dev/null
+++ b/pfam_gap_rates/KGG.gap.json
@@ -0,0 +1 @@
+{"family": "KGG", "n_seqs": 541, "length": 22, "gap_rates": [0.3068391866913124, 0.2735674676524954, 0.20147874306839186, 0.08687615526802218, 0.4399260628465804, 0.038817005545286505, 0.014787430683918669, 0.009242144177449169, 0.0018484288354898336, 0.0018484288354898336, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0018484288354898336, 0.038817005545286505, 0.07208872458410351, 0.18114602587800369, 0.37153419593345655], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/KHA.gap.json b/pfam_gap_rates/KHA.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..289a958792da0873cecfdd075bb486f6dafcdd3f
--- /dev/null
+++ b/pfam_gap_rates/KHA.gap.json
@@ -0,0 +1 @@
+{"family": "KHA", "n_seqs": 264, "length": 74, "gap_rates": [0.5303030303030303, 0.0946969696969697, 0.08712121212121213, 0.08712121212121213, 0.08712121212121213, 0.08712121212121213, 0.08712121212121213, 0.07954545454545454, 0.07575757575757576, 0.07575757575757576, 0.07196969696969698, 0.7992424242424242, 0.625, 0.4659090909090909, 0.553030303030303, 0.42045454545454547, 0.7348484848484849, 0.9090909090909091, 0.5871212121212122, 0.2159090909090909, 0.05303030303030303, 0.04924242424242424, 0.04924242424242424, 0.045454545454545456, 0.022727272727272728, 0.022727272727272728, 0.022727272727272728, 0.01893939393939394, 0.022727272727272728, 0.01893939393939394, 0.015151515151515152, 0.007575757575757576, 0.003787878787878788, 0.003787878787878788, 0.003787878787878788, 0.003787878787878788, 0.003787878787878788, 0.003787878787878788, 0.0, 0.0, 0.0, 0.007575757575757576, 0.007575757575757576, 0.007575757575757576, 0.007575757575757576, 0.8522727272727273, 0.553030303030303, 0.007575757575757576, 0.007575757575757576, 0.011363636363636364, 0.011363636363636364, 0.015151515151515152, 0.015151515151515152, 0.015151515151515152, 0.01893939393939394, 0.015151515151515152, 0.015151515151515152, 0.015151515151515152, 0.015151515151515152, 0.015151515151515152, 0.015151515151515152, 0.015151515151515152, 0.015151515151515152, 0.01893939393939394, 0.01893939393939394, 0.01893939393939394, 0.015151515151515152, 0.01893939393939394, 0.01893939393939394, 0.01893939393939394, 0.01893939393939394, 0.022727272727272728, 0.030303030303030304, 0.08333333333333333], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/KH_dom-like.gap.json b/pfam_gap_rates/KH_dom-like.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f7d4c08beb6f3c2bb29444db450c65bd8ad49fc0
--- /dev/null
+++ b/pfam_gap_rates/KH_dom-like.gap.json
@@ -0,0 +1 @@
+{"family": "KH_dom-like", "n_seqs": 2088, "length": 82, "gap_rates": [0.15900383141762453, 0.07423371647509579, 0.027298850574712645, 0.016762452107279693, 0.01293103448275862, 0.01053639846743295, 0.008620689655172414, 0.008141762452107279, 0.006704980842911878, 0.005747126436781609, 0.004310344827586207, 0.004310344827586207, 0.0038314176245210726, 0.003352490421455939, 0.0038314176245210726, 0.003352490421455939, 0.003352490421455939, 0.004310344827586207, 0.009099616858237548, 0.008141762452107279, 0.009578544061302681, 0.7471264367816092, 0.013888888888888888, 0.013888888888888888, 0.2514367816091954, 0.018199233716475097, 0.012452107279693486, 0.005268199233716475, 0.003352490421455939, 0.0028735632183908046, 0.0019157088122605363, 0.0019157088122605363, 0.0019157088122605363, 0.0019157088122605363, 0.0023946360153256703, 0.0019157088122605363, 0.0028735632183908046, 0.0028735632183908046, 0.0028735632183908046, 0.0019157088122605363, 0.0019157088122605363, 0.0019157088122605363, 0.0023946360153256703, 0.0028735632183908046, 0.0028735632183908046, 0.0028735632183908046, 0.0028735632183908046, 0.0028735632183908046, 0.0028735632183908046, 0.005747126436781609, 0.12021072796934866, 0.11206896551724138, 0.003352490421455939, 0.0028735632183908046, 0.0028735632183908046, 0.0028735632183908046, 0.0028735632183908046, 0.0028735632183908046, 0.0028735632183908046, 0.0028735632183908046, 0.0028735632183908046, 0.0028735632183908046, 0.0028735632183908046, 0.0023946360153256703, 0.0028735632183908046, 0.0028735632183908046, 0.0028735632183908046, 0.003352490421455939, 0.004310344827586207, 0.004789272030651341, 0.004789272030651341, 0.004789272030651341, 0.006226053639846743, 0.005268199233716475, 0.006226053639846743, 0.006226053639846743, 0.006226053639846743, 0.006226053639846743, 0.007662835249042145, 0.011973180076628353, 0.05603448275862069, 0.11685823754789272], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/KIF1B.gap.json b/pfam_gap_rates/KIF1B.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d2b3cd36a84edeef2294891052a65ff5fc8fd7a9
--- /dev/null
+++ b/pfam_gap_rates/KIF1B.gap.json
@@ -0,0 +1 @@
+{"family": "KIF1B", "n_seqs": 309, "length": 71, "gap_rates": [0.21359223300970873, 0.045307443365695796, 0.032362459546925564, 0.025889967637540454, 0.022653721682847898, 0.019417475728155338, 0.019417475728155338, 0.012944983818770227, 0.012944983818770227, 0.012944983818770227, 0.016181229773462782, 0.016181229773462782, 0.016181229773462782, 0.016181229773462782, 0.016181229773462782, 0.016181229773462782, 0.019417475728155338, 0.016181229773462782, 0.019417475728155338, 0.032362459546925564, 0.18122977346278318, 0.09061488673139159, 0.09061488673139159, 0.2459546925566343, 0.18770226537216828, 0.16828478964401294, 0.22330097087378642, 0.7313915857605178, 0.8737864077669902, 0.9449838187702265, 0.948220064724919, 0.9093851132686084, 0.8284789644012945, 0.6310679611650486, 0.6213592233009708, 0.598705501618123, 0.5760517799352751, 0.5275080906148867, 0.4854368932038835, 0.43042071197411, 0.8576051779935275, 0.8964401294498382, 0.912621359223301, 0.9288025889967637, 0.9385113268608414, 0.9449838187702265, 0.948220064724919, 0.948220064724919, 0.948220064724919, 0.941747572815534, 0.9320388349514563, 0.9255663430420712, 0.8996763754045307, 0.8964401294498382, 0.8446601941747572, 0.016181229773462782, 0.016181229773462782, 0.016181229773462782, 0.016181229773462782, 0.019417475728155338, 0.016181229773462782, 0.7378640776699029, 0.045307443365695796, 0.019417475728155338, 0.07766990291262135, 0.05501618122977346, 0.05825242718446602, 0.05825242718446602, 0.05825242718446602, 0.06472491909385113, 0.5372168284789643], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/KIX.gap.json b/pfam_gap_rates/KIX.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b3679d9fc3bf4ada69ec2c25832e94ea1ca2510b
--- /dev/null
+++ b/pfam_gap_rates/KIX.gap.json
@@ -0,0 +1 @@
+{"family": "KIX", "n_seqs": 155, "length": 80, "gap_rates": [0.6387096774193548, 0.32903225806451614, 0.2064516129032258, 0.12903225806451613, 0.10967741935483871, 0.1032258064516129, 0.1032258064516129, 0.08387096774193549, 0.08387096774193549, 0.08387096774193549, 0.07741935483870968, 0.07741935483870968, 0.07096774193548387, 0.07096774193548387, 0.07096774193548387, 0.07096774193548387, 0.07096774193548387, 0.05806451612903226, 0.05806451612903226, 0.05806451612903226, 0.05806451612903226, 0.03870967741935484, 0.03225806451612903, 0.01935483870967742, 0.01935483870967742, 0.012903225806451613, 0.025806451612903226, 0.03225806451612903, 0.04516129032258064, 0.03225806451612903, 0.03870967741935484, 0.01935483870967742, 0.01935483870967742, 0.01935483870967742, 0.03225806451612903, 0.03225806451612903, 0.025806451612903226, 0.03225806451612903, 0.025806451612903226, 0.025806451612903226, 0.01935483870967742, 0.01935483870967742, 0.01935483870967742, 0.01935483870967742, 0.01935483870967742, 0.01935483870967742, 0.01935483870967742, 0.01935483870967742, 0.01935483870967742, 0.01935483870967742, 0.01935483870967742, 0.025806451612903226, 0.03225806451612903, 0.03225806451612903, 0.03225806451612903, 0.03870967741935484, 0.03870967741935484, 0.03225806451612903, 0.025806451612903226, 0.03225806451612903, 0.05161290322580645, 0.05806451612903226, 0.05806451612903226, 0.05806451612903226, 0.05806451612903226, 0.05806451612903226, 0.06451612903225806, 0.06451612903225806, 0.06451612903225806, 0.06451612903225806, 0.06451612903225806, 0.07096774193548387, 0.07741935483870968, 0.07741935483870968, 0.10967741935483871, 0.12903225806451613, 0.14838709677419354, 0.16774193548387098, 0.1935483870967742, 0.2709677419354839], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/KOG2701.gap.json b/pfam_gap_rates/KOG2701.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..496d1b4522222b7d94e01447d591bafd8f63b199
--- /dev/null
+++ b/pfam_gap_rates/KOG2701.gap.json
@@ -0,0 +1 @@
+{"family": "KOG2701", "n_seqs": 115, "length": 185, "gap_rates": [0.2608695652173913, 0.16521739130434782, 0.13043478260869565, 0.13043478260869565, 0.13043478260869565, 0.13043478260869565, 0.12173913043478261, 0.12173913043478261, 0.12173913043478261, 0.12173913043478261, 0.12173913043478261, 0.12173913043478261, 0.12173913043478261, 0.12173913043478261, 0.12173913043478261, 0.12173913043478261, 0.12173913043478261, 0.12173913043478261, 0.1391304347826087, 0.12173913043478261, 0.12173913043478261, 0.12173913043478261, 0.12173913043478261, 0.12173913043478261, 0.12173913043478261, 0.13043478260869565, 0.11304347826086956, 0.12173913043478261, 0.12173913043478261, 0.11304347826086956, 0.11304347826086956, 0.11304347826086956, 0.11304347826086956, 0.11304347826086956, 0.9391304347826087, 0.11304347826086956, 0.11304347826086956, 0.11304347826086956, 0.11304347826086956, 0.12173913043478261, 0.12173913043478261, 0.11304347826086956, 0.11304347826086956, 0.12173913043478261, 0.13043478260869565, 0.2, 0.20869565217391303, 0.1391304347826087, 0.14782608695652175, 0.14782608695652175, 0.16521739130434782, 0.1565217391304348, 0.14782608695652175, 0.1391304347826087, 0.1391304347826087, 0.13043478260869565, 0.13043478260869565, 0.12173913043478261, 0.10434782608695652, 0.10434782608695652, 0.10434782608695652, 0.09565217391304348, 0.06956521739130435, 0.06956521739130435, 0.06956521739130435, 0.06956521739130435, 0.06956521739130435, 0.06956521739130435, 0.06956521739130435, 0.06956521739130435, 0.06956521739130435, 0.06956521739130435, 0.06956521739130435, 0.06956521739130435, 0.06956521739130435, 0.06956521739130435, 0.06956521739130435, 0.06956521739130435, 0.06956521739130435, 0.06956521739130435, 0.06956521739130435, 0.06956521739130435, 0.06956521739130435, 0.06956521739130435, 0.06956521739130435, 0.06956521739130435, 0.06956521739130435, 0.06956521739130435, 0.06956521739130435, 0.06956521739130435, 0.06956521739130435, 0.06956521739130435, 0.06956521739130435, 0.06086956521739131, 0.043478260869565216, 0.08695652173913043, 0.08695652173913043, 0.08695652173913043, 0.08695652173913043, 0.08695652173913043, 0.08695652173913043, 0.08695652173913043, 0.08695652173913043, 0.08695652173913043, 0.1391304347826087, 0.13043478260869565, 0.13043478260869565, 0.10434782608695652, 0.10434782608695652, 0.10434782608695652, 0.10434782608695652, 0.12173913043478261, 0.11304347826086956, 0.10434782608695652, 0.11304347826086956, 0.11304347826086956, 0.11304347826086956, 0.11304347826086956, 0.11304347826086956, 0.11304347826086956, 0.13043478260869565, 0.13043478260869565, 0.13043478260869565, 0.13043478260869565, 0.8695652173913043, 0.1565217391304348, 0.16521739130434782, 0.1565217391304348, 0.16521739130434782, 0.16521739130434782, 0.16521739130434782, 0.17391304347826086, 0.4782608695652174, 0.3217391304347826, 0.3130434782608696, 0.28695652173913044, 0.9478260869565217, 0.8869565217391304, 0.26956521739130435, 0.26956521739130435, 0.25217391304347825, 0.22608695652173913, 0.20869565217391303, 0.20869565217391303, 0.20869565217391303, 0.20869565217391303, 0.2, 0.2, 0.2, 0.19130434782608696, 0.19130434782608696, 0.19130434782608696, 0.9391304347826087, 0.9304347826086956, 0.20869565217391303, 0.21739130434782608, 0.20869565217391303, 0.21739130434782608, 0.21739130434782608, 0.24347826086956523, 0.25217391304347825, 0.2608695652173913, 0.2608695652173913, 0.2608695652173913, 0.2608695652173913, 0.2956521739130435, 0.7739130434782608, 0.5478260869565217, 0.30434782608695654, 0.3130434782608696, 0.3130434782608696, 0.28695652173913044, 0.28695652173913044, 0.28695652173913044, 0.2956521739130435, 0.2956521739130435, 0.30434782608695654, 0.30434782608695654, 0.3130434782608696, 0.3130434782608696, 0.3130434782608696, 0.3130434782608696, 0.3130434782608696, 0.3130434782608696, 0.4434782608695652], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/KTI12.gap.json b/pfam_gap_rates/KTI12.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..3a64d28478651fb75691101d25cab65ca2d301fd
--- /dev/null
+++ b/pfam_gap_rates/KTI12.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Kdo.gap.json b/pfam_gap_rates/Kdo.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..59f4ce1197b497c417865b09cd169e98845254c8
--- /dev/null
+++ b/pfam_gap_rates/Kdo.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Ketoacyl-synt_2.gap.json b/pfam_gap_rates/Ketoacyl-synt_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..1c289651a61a590a7116ec7a6e812d4766e5ee7e
--- /dev/null
+++ b/pfam_gap_rates/Ketoacyl-synt_2.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Kunitz_BPTI.gap.json b/pfam_gap_rates/Kunitz_BPTI.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..3a791eb750186dfe2dc59bd3ba11cd7ba919fae9
--- /dev/null
+++ b/pfam_gap_rates/Kunitz_BPTI.gap.json
@@ -0,0 +1 @@
+{"family": "Kunitz_BPTI", "n_seqs": 3661, "length": 56, "gap_rates": [0.5460256760447965, 0.12892652280797595, 0.1286533733952472, 0.12182463807702813, 0.11007921332969134, 0.10488937448784486, 0.09560229445506692, 0.0854957661841027, 0.07648183556405354, 0.8489483747609943, 0.06883365200764818, 0.06883365200764818, 0.05900027314941273, 0.054083583720295, 0.036875170718382956, 0.029500136574706366, 0.9226987161977602, 0.8713466266047528, 0.019393608303742146, 0.017208413001912046, 0.016115815350996994, 0.014203769461895657, 0.014203769461895657, 0.013111171810980607, 0.017208413001912046, 0.020486205954657197, 0.01447691887462442, 0.0076481835564053535, 0.00518983884184649, 0.00409724119093144, 0.00409724119093144, 0.0038240917782026767, 0.006009287080032778, 0.007375034143676591, 0.005462988254575253, 0.0035509423654739142, 0.0062824364927615405, 0.0068287353182190655, 0.013111171810980607, 0.009560229445506692, 0.011745424747336794, 0.010652827096421742, 0.013930620049166894, 0.010925976509150505, 0.012018574160065555, 0.012291723572794318, 0.012564872985523081, 0.013930620049166894, 0.015842665938268233, 0.018301010652827097, 0.02185195301830101, 0.022944550669216062, 0.027861240098333788, 0.040699262496585634, 0.041245561322043156, 0.729582081398525], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/L31.gap.json b/pfam_gap_rates/L31.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..6c9a00a46686008db9d4358ad73ad6fdda3c24eb
--- /dev/null
+++ b/pfam_gap_rates/L31.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/LAG1-DNAbind.gap.json b/pfam_gap_rates/LAG1-DNAbind.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..17c0aad90b234412db088bbb19f3c7adb25dd6c5
--- /dev/null
+++ b/pfam_gap_rates/LAG1-DNAbind.gap.json
@@ -0,0 +1 @@
+{"family": "LAG1-DNAbind", "n_seqs": 263, "length": 193, "gap_rates": [0.20532319391634982, 0.17870722433460076, 0.17490494296577946, 0.17490494296577946, 0.17110266159695817, 0.17110266159695817, 0.1634980988593156, 0.1596958174904943, 0.1596958174904943, 0.1596958174904943, 0.1596958174904943, 0.1596958174904943, 0.1596958174904943, 0.1596958174904943, 0.1596958174904943, 0.1596958174904943, 0.1596958174904943, 0.1444866920152091, 0.1520912547528517, 0.155893536121673, 0.1596958174904943, 0.1596958174904943, 0.1596958174904943, 0.1596958174904943, 0.1596958174904943, 0.1596958174904943, 0.17110266159695817, 0.17870722433460076, 0.19391634980988592, 0.20152091254752852, 0.20152091254752852, 0.2661596958174905, 0.27756653992395436, 0.2737642585551331, 0.2623574144486692, 0.28517110266159695, 0.40304182509505704, 0.8288973384030418, 0.8288973384030418, 0.8631178707224335, 0.9011406844106464, 0.9201520912547528, 0.9391634980988594, 0.9391634980988594, 0.9201520912547528, 0.9201520912547528, 0.8669201520912547, 0.8365019011406845, 0.8288973384030418, 0.8250950570342205, 0.41064638783269963, 0.3726235741444867, 0.33079847908745247, 0.33079847908745247, 0.6539923954372624, 0.6311787072243346, 0.6273764258555133, 0.6463878326996197, 0.6273764258555133, 0.6159695817490495, 0.6159695817490495, 0.6159695817490495, 0.5931558935361216, 0.5931558935361216, 0.5893536121673004, 0.5931558935361216, 0.5855513307984791, 0.5779467680608364, 0.5779467680608364, 0.5095057034220533, 0.33460076045627374, 0.3269961977186312, 0.33079847908745247, 0.5399239543726235, 0.3231939163498099, 0.3041825095057034, 0.29277566539923955, 0.27756653992395436, 0.2661596958174905, 0.23954372623574144, 0.22433460076045628, 0.22053231939163498, 0.22433460076045628, 0.21292775665399238, 0.22053231939163498, 0.22053231939163498, 0.6121673003802282, 0.22813688212927757, 0.22053231939163498, 0.21673003802281368, 0.5247148288973384, 0.23954372623574144, 0.21673003802281368, 0.21673003802281368, 0.20532319391634982, 0.20532319391634982, 0.20912547528517111, 0.20532319391634982, 0.20912547528517111, 0.19391634980988592, 0.20152091254752852, 0.23193916349809887, 0.908745247148289, 0.9201520912547528, 0.9429657794676806, 0.9429657794676806, 0.9467680608365019, 0.9429657794676806, 0.935361216730038, 0.9163498098859315, 0.908745247148289, 0.46387832699619774, 0.2965779467680608, 0.18250950570342206, 0.1634980988593156, 0.6539923954372624, 0.5931558935361216, 0.155893536121673, 0.155893536121673, 0.155893536121673, 0.155893536121673, 0.155893536121673, 0.155893536121673, 0.1596958174904943, 0.1596958174904943, 0.1596958174904943, 0.1596958174904943, 0.1634980988593156, 0.1634980988593156, 0.7452471482889734, 0.17110266159695817, 0.1634980988593156, 0.1596958174904943, 0.1634980988593156, 0.16730038022813687, 0.1634980988593156, 0.1596958174904943, 0.1596958174904943, 0.1596958174904943, 0.1596958174904943, 0.1520912547528517, 0.1520912547528517, 0.1520912547528517, 0.155893536121673, 0.155893536121673, 0.908745247148289, 0.9429657794676806, 0.9239543726235742, 0.908745247148289, 0.18250950570342206, 0.24334600760456274, 0.23954372623574144, 0.7072243346007605, 0.7642585551330798, 0.8783269961977186, 0.8935361216730038, 0.9049429657794676, 0.9201520912547528, 0.9429657794676806, 0.9467680608365019, 0.9277566539923955, 0.9049429657794676, 0.9049429657794676, 0.8859315589353612, 0.7756653992395437, 0.7604562737642585, 0.6692015209125475, 0.1596958174904943, 0.155893536121673, 0.155893536121673, 0.1520912547528517, 0.1520912547528517, 0.1520912547528517, 0.1520912547528517, 0.1520912547528517, 0.1520912547528517, 0.1520912547528517, 0.1520912547528517, 0.17110266159695817, 0.17490494296577946, 0.17490494296577946, 0.17490494296577946, 0.17490494296577946, 0.17490494296577946, 0.17490494296577946, 0.18250950570342206, 0.18250950570342206, 0.19011406844106463, 0.20912547528517111, 0.22433460076045628, 0.23954372623574144, 0.33079847908745247, 0.49049429657794674], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/LEA_2.gap.json b/pfam_gap_rates/LEA_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b6d5f2fb364f2a0d93492365738bdd0068224c2b
--- /dev/null
+++ b/pfam_gap_rates/LEA_2.gap.json
@@ -0,0 +1 @@
+{"family": "LEA_2", "n_seqs": 1546, "length": 124, "gap_rates": [0.6655886157826649, 0.20310478654592498, 0.12742561448900389, 0.06274256144890039, 0.018111254851228976, 0.009702457956015523, 0.009702457956015523, 0.009702457956015523, 0.01034928848641656, 0.481888745148771, 0.007761966364812419, 0.005821474773609315, 0.005821474773609315, 0.00517464424320828, 0.0038809831824062097, 0.9042690815006468, 0.003234152652005175, 0.00258732212160414, 0.00258732212160414, 0.01034928848641656, 0.003234152652005175, 0.0019404915912031048, 0.0019404915912031048, 0.00129366106080207, 0.0019404915912031048, 0.00129366106080207, 0.000646830530401035, 0.000646830530401035, 0.000646830530401035, 0.000646830530401035, 0.000646830530401035, 0.57503234152652, 0.004527813712807244, 0.0019404915912031048, 0.0019404915912031048, 0.0019404915912031048, 0.00258732212160414, 0.0019404915912031048, 0.0019404915912031048, 0.003234152652005175, 0.00129366106080207, 0.00129366106080207, 0.00129366106080207, 0.00129366106080207, 0.003234152652005175, 0.00258732212160414, 0.003234152652005175, 0.8318240620957309, 0.8473479948253557, 0.8402328589909444, 0.8221216041397154, 0.018758085381630013, 0.016170763260025874, 0.015523932729624839, 0.016170763260025874, 0.8984476067270375, 0.022639068564036222, 0.8777490297542044, 0.8997412677878396, 0.9139715394566623, 0.890038809831824, 0.8505821474773609, 0.009702457956015523, 0.0071151358344113845, 0.007761966364812419, 0.009055627425614488, 0.012289780077619664, 0.019404915912031046, 0.03816300129366106, 0.18822768434670117, 0.6254851228978008, 0.7677878395860285, 0.926261319534282, 0.8913324708926261, 0.666882276843467, 0.6060802069857697, 0.0258732212160414, 0.032988357050452784, 0.031047865459249677, 0.03234152652005175, 0.02652005174644243, 0.0278137128072445, 0.03040103492884864, 0.04139715394566624, 0.5271668822768435, 0.3027166882276843, 0.2503234152652005, 0.9113842173350583, 0.9385510996119016, 0.9301423027166882, 0.9023285899094438, 0.19340232858990944, 0.0278137128072445, 0.02457956015523933, 0.023932729624838292, 0.023932729624838292, 0.023932729624838292, 0.023932729624838292, 0.023932729624838292, 0.0258732212160414, 0.027166882276843468, 0.028460543337645538, 0.03169469598965071, 0.03492884864165589, 0.037516170763260026, 0.04851228978007762, 0.3680465717981889, 0.5349288486416559, 0.41073738680465716, 0.3499353169469599, 0.14877102199223805, 0.15265200517464425, 0.3111254851228978, 0.240620957309185, 0.2089262613195343, 0.21992238033635186, 0.2445019404915912, 0.2664941785252264, 0.3027166882276843, 0.3311772315653299, 0.370633893919793, 0.43014230271668824, 0.5692108667529108, 0.7218628719275549], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/LEA_5.gap.json b/pfam_gap_rates/LEA_5.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..5cfb8410a784e8a171cccb7e1827dab816578a5c
--- /dev/null
+++ b/pfam_gap_rates/LEA_5.gap.json
@@ -0,0 +1 @@
+{"family": "LEA_5", "n_seqs": 205, "length": 109, "gap_rates": [0.8390243902439024, 0.8341463414634146, 0.7609756097560976, 0.7073170731707317, 0.7121951219512195, 0.6780487804878049, 0.6731707317073171, 0.6731707317073171, 0.6731707317073171, 0.6731707317073171, 0.6731707317073171, 0.6731707317073171, 0.6731707317073171, 0.6731707317073171, 0.6731707317073171, 0.6731707317073171, 0.6731707317073171, 0.6731707317073171, 0.6731707317073171, 0.6731707317073171, 0.6731707317073171, 0.6731707317073171, 0.6731707317073171, 0.6682926829268293, 0.6634146341463415, 0.6585365853658537, 0.6585365853658537, 0.6585365853658537, 0.6585365853658537, 0.6536585365853659, 0.6536585365853659, 0.6487804878048781, 0.6439024390243903, 0.6341463414634146, 0.6146341463414634, 0.5853658536585366, 0.5463414634146342, 0.5170731707317073, 0.43902439024390244, 0.4292682926829268, 0.40487804878048783, 0.4097560975609756, 0.3170731707317073, 0.3024390243902439, 0.3024390243902439, 0.28292682926829266, 0.28292682926829266, 0.2780487804878049, 0.2780487804878049, 0.2682926829268293, 0.3170731707317073, 0.3170731707317073, 0.3121951219512195, 0.33170731707317075, 0.35121951219512193, 0.35609756097560974, 0.36585365853658536, 0.4, 0.4097560975609756, 0.4097560975609756, 0.40487804878048783, 0.22439024390243903, 0.21951219512195122, 0.2146341463414634, 0.2146341463414634, 0.21951219512195122, 0.22439024390243903, 0.22439024390243903, 0.22926829268292684, 0.22926829268292684, 0.23414634146341465, 0.23414634146341465, 0.24390243902439024, 0.23414634146341465, 0.23414634146341465, 0.23902439024390243, 0.24390243902439024, 0.25365853658536586, 0.24878048780487805, 0.24878048780487805, 0.25365853658536586, 0.25853658536585367, 0.2682926829268293, 0.2731707317073171, 0.2731707317073171, 0.32682926829268294, 0.32682926829268294, 0.33658536585365856, 0.375609756097561, 0.4146341463414634, 0.44878048780487806, 0.5560975609756098, 0.5658536585365853, 0.6292682926829268, 0.6390243902439025, 0.6780487804878049, 0.6829268292682927, 0.6926829268292682, 0.6926829268292682, 0.7024390243902439, 0.7024390243902439, 0.7121951219512195, 0.7121951219512195, 0.7170731707317073, 0.7170731707317073, 0.7170731707317073, 0.7170731707317073, 0.7170731707317073, 0.7268292682926829], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/LIDHydrolase.gap.json b/pfam_gap_rates/LIDHydrolase.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b4f7d1b181185add48177411e343730ba7037171
--- /dev/null
+++ b/pfam_gap_rates/LIDHydrolase.gap.json
@@ -0,0 +1 @@
+{"family": "LIDHydrolase", "n_seqs": 309, "length": 339, "gap_rates": [0.5339805825242718, 0.2977346278317152, 0.23300970873786409, 0.22653721682847897, 0.22653721682847897, 0.22330097087378642, 0.2168284789644013, 0.21035598705501618, 0.20388349514563106, 0.19741100323624594, 0.19741100323624594, 0.19741100323624594, 0.1941747572815534, 0.1941747572815534, 0.1941747572815534, 0.1941747572815534, 0.1941747572815534, 0.1941747572815534, 0.1941747572815534, 0.1941747572815534, 0.1941747572815534, 0.1941747572815534, 0.1941747572815534, 0.1941747572815534, 0.1941747572815534, 0.1941747572815534, 0.1941747572815534, 0.3300970873786408, 0.7216828478964401, 0.7572815533980582, 0.8122977346278317, 0.8673139158576052, 0.9158576051779935, 0.9449838187702265, 0.8867313915857605, 0.8349514563106796, 0.7702265372168284, 0.7313915857605178, 0.686084142394822, 0.2815533980582524, 0.22330097087378642, 0.18770226537216828, 0.19093851132686085, 0.19741100323624594, 0.19741100323624594, 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\ No newline at end of file
diff --git a/pfam_gap_rates/LIM_bind.gap.json b/pfam_gap_rates/LIM_bind.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a76726378740afb1f0dfbc92015f15c4f3b5f884
--- /dev/null
+++ b/pfam_gap_rates/LIM_bind.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/LMWPc.gap.json b/pfam_gap_rates/LMWPc.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..2d30ab99a8b1c8037be43ddb8d835e9db15edb23
--- /dev/null
+++ b/pfam_gap_rates/LMWPc.gap.json
@@ -0,0 +1 @@
+{"family": "LMWPc", "n_seqs": 3646, "length": 162, "gap_rates": [0.17882611080636313, 0.09709270433351619, 0.09462424574876577, 0.08694459681843116, 0.08557323093801426, 0.07981349424026331, 0.07652221612726276, 0.07432803071859573, 0.07377948436642896, 0.07350521119034559, 0.07323093801426221, 0.07240811848601207, 0.0718595721338453, 0.034009873834339004, 0.033461327482172246, 0.03318705430608886, 0.033461327482172246, 0.03318705430608886, 0.030718595721338452, 0.030718595721338452, 0.030444322545255073, 0.029621503017004936, 0.1922654964344487, 0.2473944048272079, 0.2545255074053758, 0.5049369171695008, 0.5935271530444323, 0.42073505211190343, 0.33022490400438836, 0.29566648381788263, 0.13027975863960506, 0.05458036204059243, 0.01782775644541964, 0.017004936917169502, 0.015907844212835986, 0.015085024684585847, 0.014810751508502468, 0.015085024684585847, 0.015085024684585847, 0.015359297860669226, 0.44706527701590787, 0.44295117937465717, 0.6116291826659352, 0.15990126165660998, 0.022490400438837082, 0.021941854086670324, 0.018376302797586397, 0.016456390565002744, 0.015907844212835986, 0.015907844212835986, 0.015359297860669226, 0.014810751508502468, 0.014810751508502468, 0.014536478332419089, 0.014810751508502468, 0.013987931980252331, 0.013987931980252331, 0.014536478332419089, 0.015085024684585847, 0.015085024684585847, 0.014536478332419089, 0.014810751508502468, 0.014810751508502468, 0.013987931980252331, 0.1738891936368623, 0.016730663741086123, 0.015907844212835986, 0.015085024684585847, 0.015907844212835986, 0.016182117388919365, 0.018376302797586397, 0.023861766319253977, 0.027701590784421283, 0.026604498080087767, 0.02303894679100384, 0.02303894679100384, 0.02303894679100384, 0.04827207899067471, 0.02057048820625343, 0.019473395501919913, 0.019473395501919913, 0.019747668678003292, 0.019747668678003292, 0.020844761382336808, 0.019199122325836534, 0.02002194185408667, 0.021667580910586945, 0.024410312671420735, 0.08200767964893034, 0.08694459681843116, 0.2723532638507954, 0.09051014810751508, 0.08200767964893034, 0.03867251782775644, 0.036752605595172794, 0.036752605595172794, 0.039495337356006584, 0.04388370817334065, 0.047997805814591336, 0.9445968184311574, 0.8513439385628085, 0.4317059791552386, 0.26988480526604497, 0.390016456390565, 0.4229292375205705, 0.41168403730115194, 0.40674712013165115, 0.40098738343390017, 0.3861766319253977, 0.3730115194733955, 0.36176631925397695, 0.2904552934722984, 0.2918266593527153, 0.6346681294569391, 0.8837081733406473, 0.9489851892484915, 0.9358200767964893, 0.7032364234777839, 0.5331870543060888, 0.2775644541963796, 0.15469007131102577, 0.09051014810751508, 0.08365331870543061, 0.08145913329676358, 0.08173340647284695, 0.08228195282501372, 0.0850246845858475, 0.0863960504662644, 0.08749314317059792, 0.8582007679648931, 0.9328030718595721, 0.9487109160724081, 0.8686231486560614, 0.843664289632474, 0.09188151398793198, 0.13686231486560616, 0.09599561162918267, 0.8315962698848053, 0.8976961053208996, 0.931980252331322, 0.927591881513988, 0.837904552934723, 0.803894679100384, 0.21448162369720242, 0.20872188699945146, 0.10532089961601755, 0.10641799232035107, 0.10833790455293472, 0.10970927043335162, 0.11354909489851893, 0.11437191442676906, 0.11821173889193637, 0.12260010970927043, 0.1256171146461876, 0.13027975863960506, 0.13933077345035655, 0.15139879319802524, 0.1818431157432803, 0.23779484366428963, 0.30087767416346684, 0.37218869994514536, 0.6807460230389468], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/LRR_5.gap.json b/pfam_gap_rates/LRR_5.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b8fc46264062bd251cd21d1fbe19269b80a87a1c
--- /dev/null
+++ b/pfam_gap_rates/LRR_5.gap.json
@@ -0,0 +1 @@
+{"family": "LRR_5", "n_seqs": 5000, "length": 133, "gap_rates": [0.8838, 0.733, 0.64, 0.6096, 0.5818, 0.5512, 0.5206, 0.497, 0.487, 0.4708, 0.4434, 0.613, 0.3806, 0.3534, 0.327, 0.296, 0.2658, 0.2374, 0.2208, 0.2134, 0.2304, 0.1716, 0.1518, 0.1346, 0.1194, 0.1124, 0.1092, 0.1032, 0.0912, 0.083, 0.079, 0.0754, 0.0728, 0.0686, 0.2212, 0.0652, 0.057, 0.0524, 0.0498, 0.0458, 0.0436, 0.0414, 0.0404, 0.0798, 0.9342, 0.0408, 0.9162, 0.035, 0.0334, 0.0318, 0.0298, 0.0308, 0.0332, 0.0316, 0.0286, 0.0268, 0.0268, 0.0268, 0.0264, 0.2584, 0.0382, 0.0312, 0.0288, 0.03, 0.0306, 0.0322, 0.0352, 0.0834, 0.0752, 0.8686, 0.0586, 0.0632, 0.0818, 0.0688, 0.0696, 0.0746, 0.0786, 0.0832, 0.0828, 0.0832, 0.0858, 0.1972, 0.103, 0.1018, 0.1034, 0.106, 0.113, 0.1176, 0.1214, 0.1268, 0.1348, 0.1994, 0.1804, 0.1834, 0.9188, 0.1998, 0.2086, 0.2266, 0.2214, 0.2302, 0.238, 0.2452, 0.247, 0.2498, 0.2604, 0.2718, 0.2846, 0.5438, 0.3052, 0.3134, 0.3266, 0.3444, 0.3498, 0.3616, 0.3746, 0.4054, 0.4538, 0.4686, 0.4988, 0.5334, 0.5378, 0.548, 0.5698, 0.5896, 0.6022, 0.6092, 0.6166, 0.6334, 0.655, 0.6796, 0.7938, 0.7936, 0.8318], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/LRV.gap.json b/pfam_gap_rates/LRV.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..5e0f9f025dcf5db7cb05b0d73bdc490b866786f5
--- /dev/null
+++ b/pfam_gap_rates/LRV.gap.json
@@ -0,0 +1 @@
+{"family": "LRV", "n_seqs": 142, "length": 26, "gap_rates": [0.5352112676056338, 0.11971830985915492, 0.02112676056338028, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.5, 0.5, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.007042253521126761, 0.007042253521126761, 0.04225352112676056, 0.1056338028169014, 0.2746478873239437], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Lactamase_B.gap.json b/pfam_gap_rates/Lactamase_B.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..1244b850db8112ed70918227535a897cbece7080
--- /dev/null
+++ b/pfam_gap_rates/Lactamase_B.gap.json
@@ -0,0 +1 @@
+{"family": "Lactamase_B", "n_seqs": 5000, "length": 252, "gap_rates": [0.8694, 0.7366, 0.5926, 0.439, 0.3326, 0.244, 0.187, 0.1494, 0.1304, 0.1222, 0.1786, 0.8254, 0.763, 0.109, 0.0956, 0.0854, 0.0758, 0.07, 0.0626, 0.0564, 0.0536, 0.0526, 0.053, 0.0532, 0.0544, 0.0522, 0.0512, 0.0512, 0.05, 0.0502, 0.0494, 0.0536, 0.112, 0.3914, 0.7148, 0.7592, 0.793, 0.9168, 0.9262, 0.9338, 0.9498, 0.9406, 0.929, 0.9202, 0.8844, 0.7876, 0.7484, 0.6686, 0.5272, 0.3914, 0.3268, 0.2934, 0.0672, 0.05, 0.0346, 0.0296, 0.0264, 0.024, 0.022, 0.0224, 0.0226, 0.023, 0.0206, 0.0178, 0.018, 0.0176, 0.0174, 0.0188, 0.0194, 0.017, 0.0204, 0.0204, 0.0176, 0.0194, 0.02, 0.0232, 0.0272, 0.0314, 0.033, 0.0402, 0.0444, 0.0522, 0.0608, 0.0646, 0.0716, 0.0768, 0.0802, 0.0824, 0.0848, 0.0882, 0.09, 0.0936, 0.0986, 0.1, 0.1016, 0.106, 0.1074, 0.1098, 0.1126, 0.1154, 0.119, 0.1204, 0.3038, 0.3078, 0.3464, 0.3646, 0.3764, 0.399, 0.487, 0.5778, 0.6536, 0.6736, 0.7212, 0.7516, 0.7856, 0.8166, 0.848, 0.8814, 0.8954, 0.9068, 0.918, 0.9302, 0.9386, 0.9446, 0.9338, 0.9246, 0.9126, 0.9022, 0.888, 0.872, 0.8322, 0.8024, 0.7682, 0.737, 0.7042, 0.6456, 0.6038, 0.5498, 0.4616, 0.4276, 0.3942, 0.378, 0.3572, 0.3402, 0.3192, 0.2324, 0.2042, 0.1948, 0.1706, 0.1596, 0.1544, 0.1534, 0.1526, 0.1536, 0.1538, 0.1538, 0.154, 0.1542, 0.1526, 0.1518, 0.1522, 0.1532, 0.1542, 0.1528, 0.1538, 0.1542, 0.1534, 0.1528, 0.1536, 0.154, 0.1544, 0.1558, 0.1568, 0.16, 0.1618, 0.1646, 0.1706, 0.1722, 0.9014, 0.927, 0.8668, 0.175, 0.1788, 0.1762, 0.178, 0.1756, 0.1742, 0.1736, 0.1738, 0.1744, 0.1776, 0.186, 0.208, 0.2182, 0.2588, 0.2628, 0.271, 0.2766, 0.283, 0.2916, 0.2982, 0.303, 0.309, 0.827, 0.8504, 0.8982, 0.919, 0.926, 0.9452, 0.9486, 0.9374, 0.9224, 0.9112, 0.8828, 0.834, 0.8226, 0.718, 0.7284, 0.6812, 0.667, 0.6438, 0.6046, 0.5594, 0.5398, 0.487, 0.4732, 0.429, 0.4252, 0.4172, 0.427, 0.4292, 0.433, 0.4378, 0.5364, 0.543, 0.534, 0.5254, 0.5386, 0.5418, 0.5462, 0.4824, 0.4902, 0.494, 0.4996, 0.506, 0.511, 0.5186, 0.5306, 0.5424, 0.8104, 0.556, 0.5856], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Lactamase_B_2.gap.json b/pfam_gap_rates/Lactamase_B_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..adf381ec324fc7097cc85ab7c08ff50c89cb9c19
--- /dev/null
+++ b/pfam_gap_rates/Lactamase_B_2.gap.json
@@ -0,0 +1 @@
+{"family": "Lactamase_B_2", "n_seqs": 5000, "length": 276, "gap_rates": [0.8668, 0.5918, 0.3456, 0.2798, 0.2656, 0.2638, 0.2634, 0.2612, 0.2594, 0.258, 0.7976, 0.8396, 0.855, 0.8712, 0.8454, 0.8166, 0.7842, 0.2792, 0.3184, 0.3054, 0.2912, 0.9374, 0.878, 0.5706, 0.296, 0.2856, 0.2804, 0.362, 0.9128, 0.7032, 0.6316, 0.6258, 0.6032, 0.8146, 0.5352, 0.395, 0.325, 0.2458, 0.2416, 0.204, 0.1278, 0.1234, 0.1102, 0.1304, 0.0984, 0.091, 0.09, 0.0896, 0.0896, 0.0896, 0.0934, 0.0942, 0.0896, 0.0888, 0.0888, 0.2576, 0.1172, 0.1184, 0.0984, 0.0974, 0.0934, 0.0896, 0.0898, 0.6152, 0.7984, 0.9114, 0.946, 0.848, 0.6862, 0.531, 0.1396, 0.2568, 0.2766, 0.448, 0.2964, 0.8004, 0.9278, 0.8842, 0.7058, 0.1398, 0.1156, 0.1036, 0.1054, 0.929, 0.1052, 0.1036, 0.1034, 0.1022, 0.0998, 0.1006, 0.1002, 0.1012, 0.102, 0.101, 0.1002, 0.1008, 0.1914, 0.25, 0.305, 0.3398, 0.3422, 0.3438, 0.3248, 0.3304, 0.3226, 0.707, 0.7772, 0.873, 0.9064, 0.9444, 0.9174, 0.8888, 0.815, 0.745, 0.6724, 0.515, 0.3238, 0.255, 0.1832, 0.15, 0.128, 0.118, 0.112, 0.1128, 0.9462, 0.1412, 0.1176, 0.1068, 0.1126, 0.1062, 0.1028, 0.095, 0.858, 0.9084, 0.9344, 0.9476, 0.9424, 0.9222, 0.8872, 0.8146, 0.1046, 0.588, 0.652, 0.2432, 0.1954, 0.1586, 0.1, 0.097, 0.0974, 0.1002, 0.1038, 0.102, 0.0972, 0.0978, 0.1016, 0.1048, 0.112, 0.1238, 0.8784, 0.9036, 0.9276, 0.9434, 0.949, 0.9354, 0.9214, 0.8904, 0.7584, 0.714, 0.707, 0.7, 0.6918, 0.6778, 0.6612, 0.616, 0.4936, 0.233, 0.0996, 0.0988, 0.0988, 0.0978, 0.0982, 0.0998, 0.8786, 0.9482, 0.9368, 0.7794, 0.1968, 0.177, 0.1642, 0.149, 0.0656, 0.0658, 0.066, 0.066, 0.0664, 0.0666, 0.0668, 0.0682, 0.0702, 0.1168, 0.1106, 0.114, 0.7532, 0.9432, 0.9074, 0.7352, 0.2078, 0.1356, 0.184, 0.1496, 0.2398, 0.136, 0.133, 0.1358, 0.1594, 0.945, 0.9332, 0.1364, 0.1366, 0.1372, 0.1378, 0.1392, 0.1508, 0.151, 0.162, 0.1606, 0.2808, 0.2428, 0.1754, 0.176, 0.2754, 0.269, 0.4226, 0.4572, 0.5424, 0.7276, 0.812, 0.8314, 0.8436, 0.8738, 0.879, 0.9142, 0.89, 0.8754, 0.8466, 0.8392, 0.8214, 0.7718, 0.5828, 0.2184, 0.2054, 0.2018, 0.2002, 0.2008, 0.2026, 0.204, 0.2066, 0.2096, 0.213, 0.2146, 0.2164, 0.218, 0.2218, 0.225, 0.2294, 0.2382, 0.2526, 0.2682, 0.2772, 0.2864, 0.2938, 0.3032, 0.3054, 0.3112, 0.3518, 0.5112], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Laminin_G_1.gap.json b/pfam_gap_rates/Laminin_G_1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..50d4a58146949b42181935c8d689b6fb5dd3c2c4
--- /dev/null
+++ b/pfam_gap_rates/Laminin_G_1.gap.json
@@ -0,0 +1 @@
+{"family": "Laminin_G_1", "n_seqs": 873, "length": 165, "gap_rates": [0.35853379152348225, 0.2646048109965636, 0.2325315005727377, 0.1970217640320733, 0.16151202749140894, 0.12829324169530354, 0.10423825887743414, 0.09851088201603665, 0.09507445589919816, 0.08934707903780069, 0.08934707903780069, 0.9415807560137457, 0.9129438717067583, 0.09049255441008018, 0.09049255441008018, 0.9484536082474226, 0.09278350515463918, 0.08705612829324169, 0.08476517754868271, 0.08247422680412371, 0.08132875143184422, 0.08247422680412371, 0.6002290950744559, 0.8361970217640321, 0.9026345933562429, 0.9335624284077892, 0.9450171821305842, 0.9278350515463918, 0.8591065292096219, 0.8155784650630011, 0.5337915234822451, 0.1764032073310424, 0.15463917525773196, 0.11225658648339061, 0.058419243986254296, 0.058419243986254296, 0.058419243986254296, 0.058419243986254296, 0.05956471935853379, 0.056128293241695305, 0.054982817869415807, 0.053837342497136315, 0.050400916380297825, 0.048109965635738834, 0.048109965635738834, 0.045819014891179836, 0.048109965635738834, 0.048109965635738834, 0.05154639175257732, 0.050400916380297825, 0.045819014891179836, 0.045819014891179836, 0.8419243986254296, 0.9335624284077892, 0.8877434135166093, 0.7674684994272624, 0.043528064146620846, 0.04009163802978236, 0.038946162657502864, 0.03665521191294387, 0.037800687285223365, 0.037800687285223365, 0.037800687285223365, 0.035509736540664374, 0.035509736540664374, 0.7216494845360825, 0.03436426116838488, 0.035509736540664374, 0.03436426116838488, 0.035509736540664374, 0.03436426116838488, 0.035509736540664374, 0.035509736540664374, 0.032073310423825885, 0.032073310423825885, 0.03436426116838488, 0.03436426116838488, 0.03665521191294387, 0.035509736540664374, 0.033218785796105384, 0.03436426116838488, 0.038946162657502864, 0.042382588774341354, 0.041237113402061855, 0.041237113402061855, 0.041237113402061855, 0.041237113402061855, 0.04009163802978236, 0.04009163802978236, 0.04009163802978236, 0.038946162657502864, 0.041237113402061855, 0.042382588774341354, 0.8109965635738832, 0.8419243986254296, 0.8774341351660939, 0.9163802978235968, 0.9243986254295533, 0.9095074455899198, 0.8625429553264605, 0.8327605956471936, 0.7915234822451317, 0.3035509736540664, 0.16380297823596793, 0.07445589919816724, 0.06643757159221077, 0.06300114547537228, 0.07101947308132875, 0.13058419243986255, 0.07445589919816724, 0.07789232531500573, 0.07789232531500573, 0.07560137457044673, 0.8339060710194731, 0.8797250859106529, 0.7273768613974799, 0.46048109965635736, 0.061855670103092786, 0.052691867124856816, 0.052691867124856816, 0.056128293241695305, 0.058419243986254296, 0.16036655211912945, 0.8980526918671249, 0.0572737686139748, 0.0572737686139748, 0.056128293241695305, 0.053837342497136315, 0.052691867124856816, 0.056128293241695305, 0.0572737686139748, 0.7857961053837342, 0.9026345933562429, 0.8648339060710195, 0.6781214203894617, 0.3837342497136312, 0.12142038946162657, 0.10652920962199312, 0.09392898052691867, 0.09278350515463918, 0.09621993127147767, 0.09965635738831616, 0.10080183276059565, 0.10309278350515463, 0.09851088201603665, 0.09965635738831616, 0.10080183276059565, 0.09965635738831616, 0.09965635738831616, 0.09965635738831616, 0.09965635738831616, 0.10080183276059565, 0.10080183276059565, 0.10309278350515463, 0.10423825887743414, 0.10538373424971363, 0.10996563573883161, 0.12371134020618557, 0.15120274914089346, 0.1672394043528064, 0.2016036655211913, 0.27720504009163804, 0.3917525773195876, 0.5051546391752577, 0.8350515463917526], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Laminin_I.gap.json b/pfam_gap_rates/Laminin_I.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..9af6061cd7b189afd195e91d521f085d51b97007
--- /dev/null
+++ b/pfam_gap_rates/Laminin_I.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Laminin_II.gap.json b/pfam_gap_rates/Laminin_II.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..fb2c349f48f91e7577cf176eb867c02aa2e54547
--- /dev/null
+++ b/pfam_gap_rates/Laminin_II.gap.json
@@ -0,0 +1 @@
+{"family": "Laminin_II", "n_seqs": 125, "length": 144, "gap_rates": [0.512, 0.384, 0.328, 0.264, 0.2, 0.184, 0.16, 0.144, 0.136, 0.128, 0.12, 0.12, 0.104, 0.104, 0.112, 0.104, 0.088, 0.104, 0.096, 0.088, 0.072, 0.072, 0.072, 0.072, 0.072, 0.072, 0.072, 0.056, 0.032, 0.032, 0.032, 0.032, 0.032, 0.032, 0.032, 0.04, 0.04, 0.04, 0.04, 0.504, 0.496, 0.488, 0.44, 0.416, 0.4, 0.392, 0.296, 0.304, 0.944, 0.936, 0.04, 0.024, 0.024, 0.016, 0.008, 0.008, 0.008, 0.008, 0.016, 0.016, 0.008, 0.008, 0.008, 0.008, 0.008, 0.008, 0.008, 0.008, 0.008, 0.016, 0.008, 0.008, 0.008, 0.008, 0.008, 0.008, 0.032, 0.032, 0.016, 0.016, 0.016, 0.008, 0.008, 0.008, 0.008, 0.008, 0.424, 0.4, 0.488, 0.736, 0.832, 0.824, 0.736, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.016, 0.024, 0.024, 0.024, 0.024, 0.024, 0.024, 0.024, 0.024, 0.032, 0.048, 0.048, 0.048, 0.048, 0.056, 0.056, 0.056, 0.056, 0.072, 0.072, 0.096, 0.104, 0.112, 0.12, 0.12, 0.128, 0.152, 0.184, 0.264, 0.632], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Lant_dehydr_N.gap.json b/pfam_gap_rates/Lant_dehydr_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..589031a4e9d3e54ac5e8201d850b4c8c51455ed5
--- /dev/null
+++ b/pfam_gap_rates/Lant_dehydr_N.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Leo1.gap.json b/pfam_gap_rates/Leo1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..9707312cdce8d58e6748e8797fbd4f3e7b7f1cbd
--- /dev/null
+++ b/pfam_gap_rates/Leo1.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Linocin_M18.gap.json b/pfam_gap_rates/Linocin_M18.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c0a7e8aa93b57d55d1d526723932527c6ef8f9b8
--- /dev/null
+++ b/pfam_gap_rates/Linocin_M18.gap.json
@@ -0,0 +1 @@
+{"family": "Linocin_M18", "n_seqs": 164, "length": 266, "gap_rates": [0.3353658536585366, 0.2682926829268293, 0.24390243902439024, 0.23170731707317074, 0.23170731707317074, 0.23170731707317074, 0.1951219512195122, 0.17073170731707318, 0.15853658536585366, 0.1524390243902439, 0.1402439024390244, 0.1402439024390244, 0.13414634146341464, 0.12804878048780488, 0.12804878048780488, 0.12804878048780488, 0.12195121951219512, 0.12195121951219512, 0.12195121951219512, 0.12195121951219512, 0.12195121951219512, 0.12195121951219512, 0.12195121951219512, 0.12195121951219512, 0.12195121951219512, 0.12195121951219512, 0.12195121951219512, 0.12195121951219512, 0.12195121951219512, 0.12195121951219512, 0.12195121951219512, 0.12195121951219512, 0.12195121951219512, 0.12195121951219512, 0.12195121951219512, 0.12195121951219512, 0.12195121951219512, 0.12195121951219512, 0.12195121951219512, 0.12195121951219512, 0.12804878048780488, 0.13414634146341464, 0.12804878048780488, 0.12804878048780488, 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\ No newline at end of file
diff --git a/pfam_gap_rates/Lipase.gap.json b/pfam_gap_rates/Lipase.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..4b63f035b4b2f87474cd9d73d7db3a3abb4aa756
--- /dev/null
+++ b/pfam_gap_rates/Lipase.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Lipase_GDSL.gap.json b/pfam_gap_rates/Lipase_GDSL.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..392e9b8f27d0af6b09a660cfe95abe563c9d6860
--- /dev/null
+++ b/pfam_gap_rates/Lipase_GDSL.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/LptE.gap.json b/pfam_gap_rates/LptE.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..5af3ef841833ddb83e5f09e88c1d03495c10b899
--- /dev/null
+++ b/pfam_gap_rates/LptE.gap.json
@@ -0,0 +1 @@
+{"family": "LptE", "n_seqs": 825, "length": 211, "gap_rates": [0.743030303030303, 0.3018181818181818, 0.11515151515151516, 0.06424242424242424, 0.052121212121212124, 0.03393939393939394, 0.030303030303030304, 0.025454545454545455, 0.024242424242424242, 0.02181818181818182, 0.9393939393939394, 0.05333333333333334, 0.9042424242424243, 0.03393939393939394, 0.03272727272727273, 0.03878787878787879, 0.04242424242424243, 0.88, 0.5951515151515151, 0.055757575757575756, 0.02181818181818182, 0.03272727272727273, 0.10181818181818182, 0.44242424242424244, 0.7696969696969697, 0.8751515151515151, 0.9357575757575758, 0.9139393939393939, 0.8315151515151515, 0.6824242424242424, 0.2690909090909091, 0.05333333333333334, 0.025454545454545455, 0.01818181818181818, 0.03272727272727273, 0.012121212121212121, 0.01090909090909091, 0.012121212121212121, 0.012121212121212121, 0.044848484848484846, 0.06666666666666667, 0.2315151515151515, 0.40484848484848485, 0.38181818181818183, 0.3890909090909091, 0.3563636363636364, 0.7466666666666667, 0.8993939393939394, 0.5903030303030303, 0.3927272727272727, 0.8133333333333334, 0.5890909090909091, 0.34424242424242424, 0.2993939393939394, 0.12727272727272726, 0.09696969696969697, 0.01090909090909091, 0.007272727272727273, 0.0048484848484848485, 0.0048484848484848485, 0.0036363636363636364, 0.0036363636363636364, 0.0036363636363636364, 0.007272727272727273, 0.0048484848484848485, 0.0048484848484848485, 0.0048484848484848485, 0.048484848484848485, 0.03636363636363636, 0.007272727272727273, 0.014545454545454545, 0.22424242424242424, 0.19272727272727272, 0.2824242424242424, 0.02909090909090909, 0.3987878787878788, 0.43393939393939396, 0.48363636363636364, 0.5454545454545454, 0.5878787878787879, 0.6678787878787878, 0.7527272727272727, 0.8690909090909091, 0.943030303030303, 0.9175757575757576, 0.8242424242424242, 0.7078787878787879, 0.6242424242424243, 0.5684848484848485, 0.5175757575757576, 0.45454545454545453, 0.41818181818181815, 0.31393939393939396, 0.06303030303030303, 0.39515151515151514, 0.2921212121212121, 0.2787878787878788, 0.2993939393939394, 0.2872727272727273, 0.28606060606060607, 0.03393939393939394, 0.3393939393939394, 0.3709090909090909, 0.40969696969696967, 0.46545454545454545, 0.4896969696969697, 0.6339393939393939, 0.9381818181818182, 0.7915151515151515, 0.5963636363636363, 0.4775757575757576, 0.44242424242424244, 0.3878787878787879, 0.3527272727272727, 0.32, 0.020606060606060607, 0.07878787878787878, 0.08, 0.41818181818181815, 0.17454545454545456, 0.14424242424242426, 0.16, 0.012121212121212121, 0.7612121212121212, 0.9151515151515152, 0.9393939393939394, 0.9018181818181819, 0.7321212121212122, 0.0024242424242424242, 0.0024242424242424242, 0.0024242424242424242, 0.0024242424242424242, 0.0024242424242424242, 0.0012121212121212121, 0.0012121212121212121, 0.0012121212121212121, 0.0012121212121212121, 0.0012121212121212121, 0.0012121212121212121, 0.0012121212121212121, 0.0048484848484848485, 0.0036363636363636364, 0.0036363636363636364, 0.0048484848484848485, 0.8727272727272727, 0.04606060606060606, 0.05090909090909091, 0.5793939393939394, 0.03151515151515152, 0.2109090909090909, 0.31393939393939396, 0.6727272727272727, 0.4254545454545455, 0.24, 0.16363636363636364, 0.06666666666666667, 0.10666666666666667, 0.08, 0.07878787878787878, 0.06666666666666667, 0.0496969696969697, 0.04242424242424243, 0.044848484848484846, 0.8703030303030304, 0.03636363636363636, 0.048484848484848485, 0.9224242424242424, 0.9442424242424242, 0.936969696969697, 0.9054545454545454, 0.10303030303030303, 0.2315151515151515, 0.1890909090909091, 0.1709090909090909, 0.8896969696969697, 0.9321212121212121, 0.92, 0.84, 0.6315151515151515, 0.10909090909090909, 0.08121212121212121, 0.08484848484848485, 0.05333333333333334, 0.03151515151515152, 0.027878787878787878, 0.04363636363636364, 0.04727272727272727, 0.9272727272727272, 0.9406060606060606, 0.936969696969697, 0.9175757575757576, 0.037575757575757575, 0.013333333333333334, 0.009696969696969697, 0.008484848484848486, 0.008484848484848486, 0.009696969696969697, 0.009696969696969697, 0.012121212121212121, 0.012121212121212121, 0.012121212121212121, 0.014545454545454545, 0.01575757575757576, 0.019393939393939394, 0.02666666666666667, 0.03272727272727273, 0.04, 0.07515151515151515, 0.13090909090909092, 0.34424242424242424, 0.4775757575757576], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/LsmAD.gap.json b/pfam_gap_rates/LsmAD.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..1ed3d874384c549ae16bbc1424aca6a6d1f7c65b
--- /dev/null
+++ b/pfam_gap_rates/LsmAD.gap.json
@@ -0,0 +1 @@
+{"family": "LsmAD", "n_seqs": 326, "length": 81, "gap_rates": [0.08588957055214724, 0.03374233128834356, 0.027607361963190184, 0.027607361963190184, 0.02147239263803681, 0.015337423312883436, 0.012269938650306749, 0.009202453987730062, 0.009202453987730062, 0.009202453987730062, 0.009202453987730062, 0.7392638036809815, 0.7392638036809815, 0.009202453987730062, 0.009202453987730062, 0.006134969325153374, 0.006134969325153374, 0.006134969325153374, 0.006134969325153374, 0.018404907975460124, 0.8190184049079755, 0.3343558282208589, 0.08588957055214724, 0.03680981595092025, 0.009202453987730062, 0.012269938650306749, 0.009202453987730062, 0.003067484662576687, 0.003067484662576687, 0.006134969325153374, 0.006134969325153374, 0.006134969325153374, 0.006134969325153374, 0.003067484662576687, 0.003067484662576687, 0.003067484662576687, 0.003067484662576687, 0.003067484662576687, 0.003067484662576687, 0.003067484662576687, 0.003067484662576687, 0.006134969325153374, 0.006134969325153374, 0.9325153374233128, 0.027607361963190184, 0.03067484662576687, 0.03067484662576687, 0.9478527607361963, 0.9294478527607362, 0.018404907975460124, 0.02147239263803681, 0.02147239263803681, 0.024539877300613498, 0.02147239263803681, 0.024539877300613498, 0.02147239263803681, 0.018404907975460124, 0.03374233128834356, 0.049079754601226995, 0.3312883435582822, 0.6411042944785276, 0.8926380368098159, 0.9478527607361963, 0.8282208588957055, 0.49693251533742333, 0.32515337423312884, 0.2883435582822086, 0.27607361963190186, 0.2116564417177914, 0.10429447852760736, 0.07975460122699386, 0.04294478527607362, 0.04294478527607362, 0.05828220858895705, 0.0705521472392638, 0.08588957055214724, 0.09202453987730061, 0.08588957055214724, 0.08895705521472393, 0.15950920245398773, 0.2116564417177914], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Lsr2.gap.json b/pfam_gap_rates/Lsr2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..cffca3ca7653c8945bb5ef897d9058ff0d27a4c6
--- /dev/null
+++ b/pfam_gap_rates/Lsr2.gap.json
@@ -0,0 +1 @@
+{"family": "Lsr2", "n_seqs": 354, "length": 121, "gap_rates": [0.2175141242937853, 0.19491525423728814, 0.18926553672316385, 0.18926553672316385, 0.19491525423728814, 0.1751412429378531, 0.15254237288135594, 0.1440677966101695, 0.1440677966101695, 0.14124293785310735, 0.14124293785310735, 0.1384180790960452, 0.1384180790960452, 0.1384180790960452, 0.1384180790960452, 0.8983050847457628, 0.1327683615819209, 0.12994350282485875, 0.12994350282485875, 0.12994350282485875, 0.12994350282485875, 0.807909604519774, 0.864406779661017, 0.8361581920903954, 0.7909604519774012, 0.12994350282485875, 0.12994350282485875, 0.12429378531073447, 0.12429378531073447, 0.12429378531073447, 0.11864406779661017, 0.11864406779661017, 0.11864406779661017, 0.11864406779661017, 0.11864406779661017, 0.11864406779661017, 0.11299435028248588, 0.11299435028248588, 0.11299435028248588, 0.11581920903954802, 0.11581920903954802, 0.11581920903954802, 0.11581920903954802, 0.11864406779661017, 0.11864406779661017, 0.11581920903954802, 0.11581920903954802, 0.11581920903954802, 0.11299435028248588, 0.11016949152542373, 0.11016949152542373, 0.11016949152542373, 0.11016949152542373, 0.1016949152542373, 0.09887005649717515, 0.09887005649717515, 0.096045197740113, 0.09322033898305085, 0.08757062146892655, 0.08757062146892655, 0.08757062146892655, 0.08757062146892655, 0.096045197740113, 0.211864406779661, 0.2966101694915254, 0.4378531073446328, 0.5310734463276836, 0.731638418079096, 0.867231638418079, 0.9463276836158192, 0.9067796610169492, 0.8220338983050848, 0.6807909604519774, 0.3192090395480226, 0.2598870056497175, 0.15819209039548024, 0.1327683615819209, 0.096045197740113, 0.08757062146892655, 0.0847457627118644, 0.07344632768361582, 0.062146892655367235, 0.05367231638418079, 0.04519774011299435, 0.0423728813559322, 0.03389830508474576, 0.03672316384180791, 0.03672316384180791, 0.03672316384180791, 0.03672316384180791, 0.03389830508474576, 0.02824858757062147, 0.031073446327683617, 0.03389830508474576, 0.031073446327683617, 0.031073446327683617, 0.031073446327683617, 0.031073446327683617, 0.031073446327683617, 0.03389830508474576, 0.03672316384180791, 0.03672316384180791, 0.03672316384180791, 0.03672316384180791, 0.03672316384180791, 0.03954802259887006, 0.03954802259887006, 0.0423728813559322, 0.0480225988700565, 0.0480225988700565, 0.0480225988700565, 0.0480225988700565, 0.0480225988700565, 0.0480225988700565, 0.0480225988700565, 0.0480225988700565, 0.0480225988700565, 0.05084745762711865, 0.059322033898305086, 0.0847457627118644, 0.2175141242937853], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Lys-AminoMut_A.gap.json b/pfam_gap_rates/Lys-AminoMut_A.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..fbdc44b17341d0884088c33acf3ba72bd7892b95
--- /dev/null
+++ b/pfam_gap_rates/Lys-AminoMut_A.gap.json
@@ -0,0 +1 @@
+{"family": "Lys-AminoMut_A", "n_seqs": 157, "length": 532, "gap_rates": [0.4394904458598726, 0.37579617834394907, 0.3630573248407643, 0.35668789808917195, 0.35668789808917195, 0.35668789808917195, 0.35668789808917195, 0.35668789808917195, 0.35668789808917195, 0.35668789808917195, 0.35668789808917195, 0.3503184713375796, 0.3503184713375796, 0.3503184713375796, 0.3503184713375796, 0.3503184713375796, 0.3503184713375796, 0.3503184713375796, 0.3503184713375796, 0.3503184713375796, 0.3503184713375796, 0.3503184713375796, 0.3503184713375796, 0.3503184713375796, 0.3503184713375796, 0.3503184713375796, 0.3503184713375796, 0.3503184713375796, 0.3503184713375796, 0.3503184713375796, 0.3503184713375796, 0.3503184713375796, 0.3503184713375796, 0.34394904458598724, 0.34394904458598724, 0.34394904458598724, 0.34394904458598724, 0.34394904458598724, 0.34394904458598724, 0.34394904458598724, 0.34394904458598724, 0.34394904458598724, 0.34394904458598724, 0.34394904458598724, 0.34394904458598724, 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diff --git a/pfam_gap_rates/M20_dimer.gap.json b/pfam_gap_rates/M20_dimer.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..727b12eff0d88896f58133c6f72ce6abf01c867d
--- /dev/null
+++ b/pfam_gap_rates/M20_dimer.gap.json
@@ -0,0 +1 @@
+{"family": "M20_dimer", "n_seqs": 5000, "length": 161, "gap_rates": [0.7586, 0.5402, 0.4904, 0.4414, 0.3586, 0.337, 0.3002, 0.1982, 0.0978, 0.0662, 0.0436, 0.0276, 0.8894, 0.8886, 0.0226, 0.0206, 0.0196, 0.0148, 0.0116, 0.0102, 0.0104, 0.0104, 0.0112, 0.569, 0.0568, 0.029, 0.0294, 0.029, 0.029, 0.0744, 0.0576, 0.0104, 0.0086, 0.0086, 0.0086, 0.008, 0.0076, 0.0076, 0.0076, 0.0072, 0.0074, 0.0072, 0.0068, 0.0072, 0.007, 0.0074, 0.1466, 0.1512, 0.167, 0.2618, 0.2704, 0.667, 0.6952, 0.7216, 0.7602, 0.7804, 0.7824, 0.787, 0.7888, 0.7902, 0.792, 0.794, 0.8052, 0.8094, 0.8112, 0.812, 0.8132, 0.8146, 0.8184, 0.8418, 0.8502, 0.8592, 0.881, 0.9006, 0.8906, 0.8718, 0.8558, 0.8466, 0.8202, 0.8156, 0.8142, 0.8122, 0.8116, 0.8094, 0.8078, 0.8004, 0.7932, 0.7912, 0.7896, 0.7876, 0.7846, 0.7814, 0.7724, 0.7456, 0.7062, 0.6796, 0.6448, 0.605, 0.499, 0.26, 0.2124, 0.1798, 0.1324, 0.112, 0.0152, 0.0102, 0.007, 0.0064, 0.006, 0.006, 0.0068, 0.0094, 0.0074, 0.0106, 0.0204, 0.0138, 0.7706, 0.8322, 0.7988, 0.6292, 0.0128, 0.0136, 0.0132, 0.0124, 0.0096, 0.0098, 0.0092, 0.0094, 0.0092, 0.0096, 0.0102, 0.0104, 0.0104, 0.0108, 0.0118, 0.0138, 0.0186, 0.0226, 0.0232, 0.0334, 0.0336, 0.0328, 0.0424, 0.0386, 0.0466, 0.0476, 0.0544, 0.0584, 0.0628, 0.0678, 0.0778, 0.0912, 0.111, 0.1378, 0.1854, 0.2692, 0.3438, 0.4494, 0.5862, 0.7414, 0.8818], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/MAM.gap.json b/pfam_gap_rates/MAM.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..2a5879b6cf5ebd64aa76a2e0df189760a00ab847
--- /dev/null
+++ b/pfam_gap_rates/MAM.gap.json
@@ -0,0 +1 @@
+{"family": "MAM", "n_seqs": 2191, "length": 190, "gap_rates": [0.2628936558649019, 0.2268370607028754, 0.21725239616613418, 0.21360109539023278, 0.21223185759926974, 0.21542674577818346, 0.714742126882702, 0.939297124600639, 0.8991328160657234, 0.22546782291191236, 0.19990871748060246, 0.20219078046554084, 0.1894112277498859, 0.9287996348699225, 0.22409858512094935, 0.2113190324052944, 0.19990871748060246, 0.19625741670470104, 0.21040620721131903, 0.19899589228662712, 0.1798265632131447, 0.17069831127339113, 0.8603377453217709, 0.1615700593336376, 0.15928799634869922, 0.16248288452761298, 0.16841624828845275, 0.17298037425832952, 0.2345960748516659, 0.2943861250570516, 0.33865814696485624, 0.31675034230944776, 0.2952989502510269, 0.9224098585120949, 0.9443176631675034, 0.8804198995892286, 0.2053856686444546, 0.18484710178000913, 0.1757188498402556, 0.16932907348242812, 0.16248288452761298, 0.1560931081697855, 0.15289821999087175, 0.14924691921497032, 0.1474212688270196, 0.1519853947968964, 0.15791875855773618, 0.9009584664536742, 0.9406663623916021, 0.5262437243267915, 0.4084892743039708, 0.23961661341853036, 0.1953445915107257, 0.11136467366499316, 0.08945686900958466, 0.08945686900958466, 0.08900045641259699, 0.07941579187585578, 0.07850296668188042, 0.0771337288909174, 0.07576449109995435, 0.07667731629392971, 0.08169785486079416, 0.13738019169329074, 0.18302145139205842, 0.6394340483797353, 0.10771337288909173, 0.09036969420356002, 0.07576449109995435, 0.07028753993610223, 0.07028753993610223, 0.06389776357827476, 0.06207211319032405, 0.05933363760839799, 0.05842081241442264, 0.05750798722044728, 0.05659516202647193, 0.057051574623459604, 0.057051574623459604, 0.056138749429484255, 0.057051574623459604, 0.05750798722044728, 0.07439525330899133, 0.07667731629392971, 0.910999543587403, 0.9493382017343679, 0.7886809675947056, 0.49794614331355547, 0.08900045641259699, 0.05750798722044728, 0.7266088544043816, 0.05203103605659516, 0.05066179826563213, 0.0492925604746691, 0.04974897307165678, 0.048836147877681424, 0.048836147877681424, 0.04701049748973072, 0.0492925604746691, 0.9114559561843907, 0.9219534459151073, 0.9046097672295755, 0.06572341396622547, 0.0629849383842994, 0.05933363760839799, 0.9205842081241442, 0.09904153354632587, 0.06754906435417618, 0.05294386125057052, 0.05248744865358284, 0.05203103605659516, 0.051574623459607484, 0.053400273847558195, 0.054313099041533544, 0.0552259242355089, 0.05796439981743496, 0.06252852578731173, 0.06846188954815152, 0.0730260155180283, 0.07759014148790506, 0.8137836604290278, 0.9068918302145139, 0.9415791875855773, 0.8767685988133272, 0.7220447284345048, 0.4673664993153811, 0.25559105431309903, 0.09995435874030123, 0.07165677772706527, 0.0629849383842994, 0.0611592879963487, 0.0611592879963487, 0.08215426745778183, 0.07622090369694204, 0.9429484253765404, 0.06983112733911456, 0.06389776357827476, 0.06435417617526244, 0.06526700136923778, 0.9452304883614788, 0.06983112733911456, 0.06572341396622547, 0.06435417617526244, 0.06389776357827476, 0.0629849383842994, 0.06344135098128709, 0.06435417617526244, 0.06526700136923778, 0.06572341396622547, 0.06617982656321314, 0.06754906435417618, 0.07028753993610223, 0.5390232770424463, 0.9475125513464172, 0.8178913738019169, 0.11729803742583295, 0.08534915563669557, 0.08261068005476951, 0.08352350524874487, 0.08580556823368325, 0.09128251939753537, 0.09584664536741214, 0.09675947056138749, 0.10132359653126426, 0.1026928343222273, 0.10360565951620265, 0.9297124600638977, 0.8607941579187586, 0.20356001825650388, 0.16522136010953903, 0.13920584208124145, 0.11958010041077134, 0.12186216339570972, 0.12094933820173437, 0.11410314924691921, 0.11319032405294387, 0.11319032405294387, 0.11364673664993154, 0.11364673664993154, 0.11364673664993154, 0.11410314924691921, 0.11592879963486992, 0.1182108626198083, 0.13144682793245094, 0.36923779096303055, 0.31857599269739845, 0.2519397535371976, 0.2724783204016431, 0.2943861250570516, 0.6659059790050206], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/MAPEG.gap.json b/pfam_gap_rates/MAPEG.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e3a37341dec6ac59198c98b8fb0ffdf72fccaceb
--- /dev/null
+++ b/pfam_gap_rates/MAPEG.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/MCH.gap.json b/pfam_gap_rates/MCH.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..8258c077b0d23f0f7474e61c6bf35b4c3ea6e9c5
--- /dev/null
+++ b/pfam_gap_rates/MCH.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/MENTAL.gap.json b/pfam_gap_rates/MENTAL.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a538c97c3d5a3de4b2a39bbc75232591d458504a
--- /dev/null
+++ b/pfam_gap_rates/MENTAL.gap.json
@@ -0,0 +1 @@
+{"family": "MENTAL", "n_seqs": 132, "length": 193, "gap_rates": [0.4015151515151515, 0.3560606060606061, 0.3181818181818182, 0.3106060606060606, 0.30303030303030304, 0.29545454545454547, 0.29545454545454547, 0.25757575757575757, 0.24242424242424243, 0.24242424242424243, 0.24242424242424243, 0.24242424242424243, 0.24242424242424243, 0.23484848484848486, 0.23484848484848486, 0.23484848484848486, 0.23484848484848486, 0.23484848484848486, 0.23484848484848486, 0.23484848484848486, 0.24242424242424243, 0.23484848484848486, 0.22727272727272727, 0.2196969696969697, 0.2196969696969697, 0.21212121212121213, 0.21212121212121213, 0.20454545454545456, 0.1893939393939394, 0.1893939393939394, 0.5075757575757576, 0.9393939393939394, 0.21212121212121213, 0.2196969696969697, 0.1893939393939394, 0.15151515151515152, 0.12878787878787878, 0.12121212121212122, 0.11363636363636363, 0.11363636363636363, 0.11363636363636363, 0.11363636363636363, 0.10606060606060606, 0.10606060606060606, 0.10606060606060606, 0.10606060606060606, 0.8409090909090909, 0.8409090909090909, 0.8409090909090909, 0.10606060606060606, 0.10606060606060606, 0.10606060606060606, 0.10606060606060606, 0.10606060606060606, 0.10606060606060606, 0.10606060606060606, 0.10606060606060606, 0.10606060606060606, 0.12878787878787878, 0.13636363636363635, 0.13636363636363635, 0.13636363636363635, 0.13636363636363635, 0.13636363636363635, 0.13636363636363635, 0.14393939393939395, 0.15151515151515152, 0.1590909090909091, 0.1590909090909091, 0.1590909090909091, 0.15151515151515152, 0.15151515151515152, 0.15151515151515152, 0.15151515151515152, 0.15151515151515152, 0.9318181818181818, 0.9318181818181818, 0.9318181818181818, 0.1590909090909091, 0.16666666666666666, 0.15151515151515152, 0.15151515151515152, 0.15151515151515152, 0.15151515151515152, 0.15151515151515152, 0.15151515151515152, 0.13636363636363635, 0.12121212121212122, 0.12121212121212122, 0.12878787878787878, 0.12878787878787878, 0.12878787878787878, 0.12878787878787878, 0.12878787878787878, 0.12878787878787878, 0.12878787878787878, 0.12878787878787878, 0.12878787878787878, 0.12878787878787878, 0.13636363636363635, 0.14393939393939395, 0.15151515151515152, 0.15151515151515152, 0.15151515151515152, 0.2803030303030303, 0.17424242424242425, 0.17424242424242425, 0.5151515151515151, 0.9090909090909091, 0.946969696969697, 0.8560606060606061, 0.4621212121212121, 0.16666666666666666, 0.16666666666666666, 0.18181818181818182, 0.18181818181818182, 0.18181818181818182, 0.18181818181818182, 0.18181818181818182, 0.18181818181818182, 0.17424242424242425, 0.17424242424242425, 0.17424242424242425, 0.17424242424242425, 0.18181818181818182, 0.18181818181818182, 0.18181818181818182, 0.18181818181818182, 0.18181818181818182, 0.20454545454545456, 0.21212121212121213, 0.2196969696969697, 0.24242424242424243, 0.22727272727272727, 0.2196969696969697, 0.2196969696969697, 0.2196969696969697, 0.23484848484848486, 0.25, 0.26515151515151514, 0.25757575757575757, 0.26515151515151514, 0.2803030303030303, 0.2803030303030303, 0.2727272727272727, 0.2727272727272727, 0.2727272727272727, 0.2727272727272727, 0.2803030303030303, 0.48484848484848486, 0.3333333333333333, 0.3484848484848485, 0.3484848484848485, 0.3484848484848485, 0.7272727272727273, 0.9242424242424242, 0.8560606060606061, 0.4621212121212121, 0.42424242424242425, 0.4318181818181818, 0.4015151515151515, 0.4015151515151515, 0.3939393939393939, 0.4015151515151515, 0.4015151515151515, 0.4015151515151515, 0.4090909090909091, 0.42424242424242425, 0.42424242424242425, 0.4393939393939394, 0.45454545454545453, 0.7272727272727273, 0.7272727272727273, 0.7272727272727273, 0.75, 0.7727272727272727, 0.803030303030303, 0.803030303030303, 0.9015151515151515, 0.946969696969697, 0.8636363636363636, 0.5454545454545454, 0.5, 0.5075757575757576, 0.5075757575757576, 0.5151515151515151, 0.5151515151515151, 0.5151515151515151, 0.5151515151515151, 0.5151515151515151, 0.5378787878787878, 0.5606060606060606, 0.6287878787878788], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/MFS_5.gap.json b/pfam_gap_rates/MFS_5.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..5000febcfff0206099a63473c995e2600a28a886
--- /dev/null
+++ b/pfam_gap_rates/MFS_5.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/MH1.gap.json b/pfam_gap_rates/MH1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..8b1ddde57a99bdf5e848276b7a80a64a2cff213c
--- /dev/null
+++ b/pfam_gap_rates/MH1.gap.json
@@ -0,0 +1 @@
+{"family": "MH1", "n_seqs": 613, "length": 128, "gap_rates": [0.9347471451876019, 0.16639477977161501, 0.14518760195758565, 0.12234910277324633, 0.11908646003262642, 0.11256117455138662, 0.10440456769983687, 0.10114192495921696, 0.09951060358890701, 0.09624796084828711, 0.09624796084828711, 0.09624796084828711, 0.09624796084828711, 0.09461663947797716, 0.0929853181076672, 0.33442088091353994, 0.768352365415987, 0.7357259380097879, 0.16476345840130505, 0.08319738988580751, 0.08319738988580751, 0.0799347471451876, 0.0799347471451876, 0.0799347471451876, 0.0799347471451876, 0.0799347471451876, 0.07830342577487764, 0.0766721044045677, 0.0799347471451876, 0.4078303425774878, 0.26753670473083196, 0.4061990212071778, 0.07830342577487764, 0.0799347471451876, 0.0766721044045677, 0.1370309951060359, 0.0734094616639478, 0.0734094616639478, 0.0734094616639478, 0.08482871125611746, 0.06851549755301795, 0.1468189233278956, 0.9412724306688418, 0.9412724306688418, 0.9429037520391517, 0.9445350734094616, 0.9461663947797716, 0.9461663947797716, 0.9461663947797716, 0.9429037520391517, 0.9412724306688418, 0.9412724306688418, 0.9380097879282219, 0.3066884176182708, 0.29526916802610115, 0.2903752039151713, 0.2805872756933116, 0.27895595432300163, 0.27732463295269166, 0.27895595432300163, 0.2724306688417618, 0.10766721044045677, 0.08156606851549755, 0.06199021207177814, 0.057096247960848286, 0.05546492659053834, 0.048939641109298535, 0.04567699836867863, 0.04241435562805873, 0.06035889070146819, 0.040783034257748776, 0.03915171288743882, 0.037520391517128875, 0.037520391517128875, 0.7960848287112561, 0.797716150081566, 0.797716150081566, 0.797716150081566, 0.7960848287112561, 0.03915171288743882, 0.040783034257748776, 0.040783034257748776, 0.04241435562805873, 0.04241435562805873, 0.24469820554649266, 0.04241435562805873, 0.03915171288743882, 0.06525285481239804, 0.19412724306688417, 0.037520391517128875, 0.03425774877650897, 0.03588907014681892, 0.03588907014681892, 0.037520391517128875, 0.037520391517128875, 0.03588907014681892, 0.03425774877650897, 0.03425774877650897, 0.03425774877650897, 0.03425774877650897, 0.03425774877650897, 0.037520391517128875, 0.7471451876019576, 0.040783034257748776, 0.04241435562805873, 0.05546492659053834, 0.09951060358890701, 0.06035889070146819, 0.052202283849918436, 0.04567699836867863, 0.7781402936378466, 0.800978792822186, 0.8058727569331158, 0.802610114192496, 0.7960848287112561, 0.7553017944535073, 0.04567699836867863, 0.04730831973898858, 0.04730831973898858, 0.04730831973898858, 0.04730831973898858, 0.048939641109298535, 0.048939641109298535, 0.048939641109298535, 0.05057096247960848, 0.11092985318107668, 0.28711256117455136, 0.43066884176182707], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/MHYT.gap.json b/pfam_gap_rates/MHYT.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..96a3eba3b251f1240fd140b5054687143ecdeb5a
--- /dev/null
+++ b/pfam_gap_rates/MHYT.gap.json
@@ -0,0 +1 @@
+{"family": "MHYT", "n_seqs": 1164, "length": 75, "gap_rates": [0.1640893470790378, 0.061855670103092786, 0.022336769759450172, 0.01718213058419244, 0.014604810996563574, 0.014604810996563574, 0.011168384879725086, 0.009450171821305841, 0.00859106529209622, 0.006013745704467354, 0.007731958762886598, 0.006872852233676976, 0.005154639175257732, 0.007731958762886598, 0.00429553264604811, 0.003436426116838488, 0.011168384879725086, 0.8823024054982818, 0.9003436426116839, 0.9467353951890034, 0.9192439862542955, 0.8900343642611683, 0.8711340206185567, 0.06958762886597938, 0.8582474226804123, 0.8908934707903781, 0.9089347079037801, 0.8805841924398625, 0.8290378006872853, 0.01632302405498282, 0.8874570446735395, 0.010309278350515464, 0.009450171821305841, 0.012027491408934709, 0.006872852233676976, 0.005154639175257732, 0.00859106529209622, 0.009450171821305841, 0.010309278350515464, 0.01288659793814433, 0.011168384879725086, 0.011168384879725086, 0.009450171821305841, 0.9201030927835051, 0.9441580756013745, 0.9338487972508591, 0.9054982817869416, 0.020618556701030927, 0.018900343642611683, 0.01804123711340206, 0.01804123711340206, 0.013745704467353952, 0.01288659793814433, 0.014604810996563574, 0.01632302405498282, 0.018900343642611683, 0.02491408934707904, 0.02663230240549828, 0.028350515463917526, 0.0429553264604811, 0.05584192439862543, 0.10395189003436427, 0.16237113402061856, 0.2027491408934708, 0.2508591065292096, 0.2920962199312715, 0.3393470790378007, 0.4209621993127148, 0.4639175257731959, 0.5420962199312714, 0.602233676975945, 0.654639175257732, 0.7422680412371134, 0.8298969072164949, 0.9398625429553265], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/MIB_HERC2.gap.json b/pfam_gap_rates/MIB_HERC2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..7ef94afec2c016a46317fec6e55a134f9fea3fcd
--- /dev/null
+++ b/pfam_gap_rates/MIB_HERC2.gap.json
@@ -0,0 +1 @@
+{"family": "MIB_HERC2", "n_seqs": 510, "length": 70, "gap_rates": [0.11960784313725491, 0.0784313725490196, 0.056862745098039215, 0.052941176470588235, 0.049019607843137254, 0.047058823529411764, 0.0392156862745098, 0.03333333333333333, 0.03137254901960784, 0.03137254901960784, 0.03137254901960784, 0.03137254901960784, 0.029411764705882353, 0.029411764705882353, 0.023529411764705882, 0.021568627450980392, 0.0196078431372549, 0.021568627450980392, 0.12352941176470589, 0.10392156862745099, 0.025490196078431372, 0.021568627450980392, 0.0196078431372549, 0.0196078431372549, 0.0196078431372549, 0.0196078431372549, 0.8137254901960784, 0.03725490196078431, 0.054901960784313725, 0.37254901960784315, 0.49411764705882355, 0.5372549019607843, 0.5274509803921569, 0.5019607843137255, 0.8372549019607843, 0.9372549019607843, 0.6058823529411764, 0.2607843137254902, 0.052941176470588235, 0.050980392156862744, 0.049019607843137254, 0.049019607843137254, 0.047058823529411764, 0.047058823529411764, 0.045098039215686274, 0.045098039215686274, 0.043137254901960784, 0.043137254901960784, 0.9176470588235294, 0.049019607843137254, 0.052941176470588235, 0.058823529411764705, 0.060784313725490195, 0.06470588235294118, 0.07058823529411765, 0.07058823529411765, 0.07058823529411765, 0.07254901960784314, 0.18627450980392157, 0.19411764705882353, 0.08627450980392157, 0.08627450980392157, 0.10392156862745099, 0.09411764705882353, 0.09607843137254903, 0.09803921568627451, 0.11176470588235295, 0.1450980392156863, 0.19411764705882353, 0.9450980392156862], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/MIEAP.gap.json b/pfam_gap_rates/MIEAP.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..8fd2c14f292e1baa0263df44009dc794953b4eff
--- /dev/null
+++ b/pfam_gap_rates/MIEAP.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/MIF4G.gap.json b/pfam_gap_rates/MIF4G.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..1b984c2c6ed34062837437fd3bec069ac9278ec0
--- /dev/null
+++ b/pfam_gap_rates/MIF4G.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/MIP.gap.json b/pfam_gap_rates/MIP.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..618d4895fa297895f38613269e95f28ea90fdaa6
--- /dev/null
+++ b/pfam_gap_rates/MIP.gap.json
@@ -0,0 +1 @@
+{"family": "MIP", "n_seqs": 4278, "length": 265, "gap_rates": [0.9415614773258532, 0.884525479195886, 0.8571762505843852, 0.7893875642823749, 0.7290790088826554, 0.6383824216923796, 0.5455820476858345, 0.44530154277699857, 0.36208508648901355, 0.2980364656381487, 0.2281439925198691, 0.2136512388966807, 0.20383356708742403, 0.20196353436185133, 0.20126227208976158, 0.19635343618513323, 0.1951846657316503, 0.19448340345956056, 0.19308087891538103, 0.19074333800841514, 0.18840579710144928, 0.18536699392239364, 0.18513323983169705, 0.1881720430107527, 0.1844319775596073, 0.18373071528751753, 0.18326320710612437, 0.9453015427769986, 0.8838242169237962, 0.20126227208976158, 0.19588592800374008, 0.19027582982702199, 0.3581112669471716, 0.2297802711547452, 0.21201496026180458, 0.20126227208976158, 0.20453482935951378, 0.21014492753623187, 0.3024777933613838, 0.32561944834034595, 0.65684899485741, 0.6435250116877045, 0.7101449275362319, 0.6023842917251052, 0.5341280972417017, 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\ No newline at end of file
diff --git a/pfam_gap_rates/MIT_C.gap.json b/pfam_gap_rates/MIT_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..215ed10275d5fb5e35253fc8a4f9a53d96151914
--- /dev/null
+++ b/pfam_gap_rates/MIT_C.gap.json
@@ -0,0 +1 @@
+{"family": "MIT_C", "n_seqs": 140, "length": 153, "gap_rates": [0.08571428571428572, 0.06428571428571428, 0.06428571428571428, 0.05714285714285714, 0.05714285714285714, 0.05714285714285714, 0.05714285714285714, 0.05714285714285714, 0.05714285714285714, 0.05714285714285714, 0.05, 0.05, 0.05, 0.05, 0.9357142857142857, 0.37857142857142856, 0.05, 0.04285714285714286, 0.04285714285714286, 0.04285714285714286, 0.04285714285714286, 0.04285714285714286, 0.04285714285714286, 0.04285714285714286, 0.04285714285714286, 0.04285714285714286, 0.05, 0.05, 0.05, 0.05, 0.04285714285714286, 0.04285714285714286, 0.03571428571428571, 0.04285714285714286, 0.04285714285714286, 0.04285714285714286, 0.04285714285714286, 0.03571428571428571, 0.03571428571428571, 0.03571428571428571, 0.03571428571428571, 0.03571428571428571, 0.03571428571428571, 0.04285714285714286, 0.03571428571428571, 0.03571428571428571, 0.7642857142857142, 0.95, 0.9428571428571428, 0.7357142857142858, 0.15, 0.04285714285714286, 0.03571428571428571, 0.03571428571428571, 0.04285714285714286, 0.03571428571428571, 0.03571428571428571, 0.03571428571428571, 0.03571428571428571, 0.03571428571428571, 0.03571428571428571, 0.02857142857142857, 0.04285714285714286, 0.05, 0.05, 0.9071428571428571, 0.6357142857142857, 0.10714285714285714, 0.2571428571428571, 0.29285714285714287, 0.21428571428571427, 0.15, 0.06428571428571428, 0.05, 0.05, 0.05, 0.05, 0.06428571428571428, 0.06428571428571428, 0.05714285714285714, 0.05714285714285714, 0.05714285714285714, 0.05714285714285714, 0.06428571428571428, 0.06428571428571428, 0.06428571428571428, 0.06428571428571428, 0.06428571428571428, 0.06428571428571428, 0.06428571428571428, 0.06428571428571428, 0.06428571428571428, 0.06428571428571428, 0.06428571428571428, 0.06428571428571428, 0.9071428571428571, 0.8928571428571429, 0.09285714285714286, 0.07142857142857142, 0.06428571428571428, 0.06428571428571428, 0.06428571428571428, 0.06428571428571428, 0.06428571428571428, 0.06428571428571428, 0.05714285714285714, 0.05714285714285714, 0.05714285714285714, 0.05714285714285714, 0.07142857142857142, 0.07142857142857142, 0.07142857142857142, 0.07857142857142857, 0.07857142857142857, 0.07857142857142857, 0.08571428571428572, 0.08571428571428572, 0.08571428571428572, 0.08571428571428572, 0.08571428571428572, 0.08571428571428572, 0.08571428571428572, 0.08571428571428572, 0.08571428571428572, 0.08571428571428572, 0.8857142857142857, 0.8285714285714286, 0.32857142857142857, 0.1, 0.1, 0.09285714285714286, 0.10714285714285714, 0.11428571428571428, 0.11428571428571428, 0.11428571428571428, 0.11428571428571428, 0.11428571428571428, 0.11428571428571428, 0.11428571428571428, 0.11428571428571428, 0.11428571428571428, 0.11428571428571428, 0.11428571428571428, 0.11428571428571428, 0.11428571428571428, 0.11428571428571428, 0.11428571428571428, 0.12142857142857143, 0.14285714285714285, 0.15714285714285714, 0.16428571428571428, 0.18571428571428572, 0.3357142857142857], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/MOZ_SAS.gap.json b/pfam_gap_rates/MOZ_SAS.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..1af88f3acb7415da8694100481269f7f1a4e09ce
--- /dev/null
+++ b/pfam_gap_rates/MOZ_SAS.gap.json
@@ -0,0 +1 @@
+{"family": "MOZ_SAS", "n_seqs": 1071, "length": 204, "gap_rates": [0.17833800186741364, 0.1437908496732026, 0.13725490196078433, 0.12978524743230627, 0.12605042016806722, 0.11951447245564893, 0.11951447245564893, 0.11204481792717087, 0.10270774976657329, 0.9010270774976658, 0.900093370681606, 0.096171802054155, 0.09337068160597572, 0.09243697478991597, 0.09243697478991597, 0.09337068160597572, 0.09243697478991597, 0.09056956115779645, 0.0896358543417367, 0.0896358543417367, 0.09056956115779645, 0.0896358543417367, 0.08776844070961717, 0.08590102707749767, 0.08590102707749767, 0.08590102707749767, 0.08496732026143791, 0.08403361344537816, 0.08309990662931839, 0.08029878618113913, 0.08029878618113913, 0.08029878618113913, 0.07936507936507936, 0.0784313725490196, 0.0784313725490196, 0.07563025210084033, 0.07469654528478058, 0.07469654528478058, 0.07469654528478058, 0.07376283846872082, 0.07282913165266107, 0.07282913165266107, 0.07282913165266107, 0.07282913165266107, 0.07282913165266107, 0.07469654528478058, 0.07563025210084033, 0.07749766573295985, 0.0765639589169001, 0.07749766573295985, 0.07936507936507936, 0.08029878618113913, 0.08123249299719888, 0.08029878618113913, 0.08029878618113913, 0.0784313725490196, 0.0784313725490196, 0.08309990662931839, 0.08403361344537816, 0.9178338001867413, 0.9374416433239963, 0.9411764705882353, 0.9486461251167133, 0.9449112978524743, 0.938375350140056, 0.9290382819794585, 0.9131652661064426, 0.08870214752567694, 0.11297852474323063, 0.10737628384687208, 0.10270774976657329, 0.09803921568627451, 0.0784313725490196, 0.0784313725490196, 0.07936507936507936, 0.07936507936507936, 0.07936507936507936, 0.07563025210084033, 0.0765639589169001, 0.0718954248366013, 0.06909430438842204, 0.0718954248366013, 0.10084033613445378, 0.096171802054155, 0.10830999066293184, 0.1353874883286648, 0.10270774976657329, 0.08683473389355742, 0.08683473389355742, 0.08683473389355742, 0.08776844070961717, 0.08683473389355742, 0.08683473389355742, 0.08496732026143791, 0.08403361344537816, 0.08403361344537816, 0.08309990662931839, 0.08403361344537816, 0.08496732026143791, 0.08403361344537816, 0.08216619981325864, 0.08309990662931839, 0.08309990662931839, 0.08403361344537816, 0.08403361344537816, 0.08403361344537816, 0.08496732026143791, 0.08403361344537816, 0.08590102707749767, 0.08403361344537816, 0.07749766573295985, 0.07469654528478058, 0.07749766573295985, 0.07936507936507936, 0.07749766573295985, 0.07749766573295985, 0.0784313725490196, 0.07936507936507936, 0.07936507936507936, 0.07749766573295985, 0.0784313725490196, 0.07563025210084033, 0.0765639589169001, 0.0784313725490196, 0.07749766573295985, 0.07749766573295985, 0.07749766573295985, 0.0765639589169001, 0.0765639589169001, 0.0765639589169001, 0.0765639589169001, 0.07563025210084033, 0.0784313725490196, 0.07749766573295985, 0.0765639589169001, 0.07749766573295985, 0.0784313725490196, 0.0784313725490196, 0.07936507936507936, 0.08123249299719888, 0.08216619981325864, 0.08216619981325864, 0.08216619981325864, 0.08309990662931839, 0.08216619981325864, 0.08216619981325864, 0.08403361344537816, 0.08496732026143791, 0.08683473389355742, 0.09337068160597572, 0.09990662931839403, 0.6517273576097106, 0.7675070028011205, 0.8169934640522876, 0.9103641456582633, 0.9281045751633987, 0.9393090569561158, 0.9449112978524743, 0.9477124183006536, 0.9430438842203548, 0.9365079365079365, 0.9234360410831, 0.8898225957049486, 0.7833800186741363, 0.7338935574229691, 0.5994397759103641, 0.3697478991596639, 0.17180205415499533, 0.14565826330532214, 0.13352007469654528, 0.13258636788048553, 0.13818860877684408, 0.14098972922502334, 0.14285714285714285, 0.1465919701213819, 0.15126050420168066, 0.15592903828197946, 0.15873015873015872, 0.15966386554621848, 0.16059757236227826, 0.16246498599439776, 0.16339869281045752, 0.16433239962651727, 0.16526610644257703, 0.16619981325863678, 0.16713352007469653, 0.16619981325863678, 0.16713352007469653, 0.16713352007469653, 0.17086834733893558, 0.1746031746031746, 0.1746031746031746, 0.17833800186741364, 0.1811391223155929, 0.18487394957983194, 0.1876750700280112, 0.19981325863678806, 0.21101774042950514, 0.2642390289449113, 0.3473389355742297, 0.4080298786181139, 0.4565826330532213, 0.5630252100840336, 0.7684407096171803], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/MRC1.gap.json b/pfam_gap_rates/MRC1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..fb143f91e370b53265439c7014c91bb85f5d84e4
--- /dev/null
+++ b/pfam_gap_rates/MRC1.gap.json
@@ -0,0 +1 @@
+{"family": "MRC1", "n_seqs": 130, "length": 170, "gap_rates": [0.6384615384615384, 0.3153846153846154, 0.16923076923076924, 0.1076923076923077, 0.08461538461538462, 0.046153846153846156, 0.023076923076923078, 0.023076923076923078, 0.023076923076923078, 0.023076923076923078, 0.023076923076923078, 0.023076923076923078, 0.023076923076923078, 0.023076923076923078, 0.023076923076923078, 0.023076923076923078, 0.023076923076923078, 0.023076923076923078, 0.8461538461538461, 0.023076923076923078, 0.03076923076923077, 0.023076923076923078, 0.023076923076923078, 0.023076923076923078, 0.03076923076923077, 0.038461538461538464, 0.05384615384615385, 0.7923076923076923, 0.8769230769230769, 0.9076923076923077, 0.9153846153846154, 0.9461538461538461, 0.9461538461538461, 0.9461538461538461, 0.9307692307692308, 0.9153846153846154, 0.8846153846153846, 0.8307692307692308, 0.7769230769230769, 0.046153846153846156, 0.046153846153846156, 0.038461538461538464, 0.023076923076923078, 0.023076923076923078, 0.19230769230769232, 0.038461538461538464, 0.03076923076923077, 0.038461538461538464, 0.9230769230769231, 0.9, 0.08461538461538462, 0.046153846153846156, 0.6230769230769231, 0.06153846153846154, 0.023076923076923078, 0.023076923076923078, 0.023076923076923078, 0.023076923076923078, 0.023076923076923078, 0.023076923076923078, 0.023076923076923078, 0.023076923076923078, 0.046153846153846156, 0.5615384615384615, 0.13846153846153847, 0.023076923076923078, 0.03076923076923077, 0.9384615384615385, 0.9307692307692308, 0.03076923076923077, 0.03076923076923077, 0.03076923076923077, 0.038461538461538464, 0.038461538461538464, 0.038461538461538464, 0.038461538461538464, 0.038461538461538464, 0.038461538461538464, 0.038461538461538464, 0.038461538461538464, 0.046153846153846156, 0.05384615384615385, 0.05384615384615385, 0.05384615384615385, 0.05384615384615385, 0.05384615384615385, 0.05384615384615385, 0.05384615384615385, 0.05384615384615385, 0.046153846153846156, 0.046153846153846156, 0.046153846153846156, 0.046153846153846156, 0.046153846153846156, 0.046153846153846156, 0.046153846153846156, 0.046153846153846156, 0.038461538461538464, 0.038461538461538464, 0.038461538461538464, 0.046153846153846156, 0.046153846153846156, 0.03076923076923077, 0.03076923076923077, 0.46153846153846156, 0.03076923076923077, 0.03076923076923077, 0.13076923076923078, 0.7692307692307693, 0.9230769230769231, 0.6384615384615384, 0.5846153846153846, 0.8846153846153846, 0.1076923076923077, 0.08461538461538462, 0.07692307692307693, 0.06923076923076923, 0.8769230769230769, 0.07692307692307693, 0.06153846153846154, 0.06153846153846154, 0.9230769230769231, 0.8538461538461538, 0.12307692307692308, 0.11538461538461539, 0.06923076923076923, 0.06153846153846154, 0.06153846153846154, 0.07692307692307693, 0.8461538461538461, 0.3153846153846154, 0.17692307692307693, 0.08461538461538462, 0.08461538461538462, 0.09230769230769231, 0.07692307692307693, 0.06923076923076923, 0.06153846153846154, 0.07692307692307693, 0.06923076923076923, 0.06923076923076923, 0.06923076923076923, 0.06923076923076923, 0.07692307692307693, 0.07692307692307693, 0.08461538461538462, 0.19230769230769232, 0.16923076923076924, 0.1, 0.07692307692307693, 0.08461538461538462, 0.08461538461538462, 0.8769230769230769, 0.07692307692307693, 0.07692307692307693, 0.1, 0.08461538461538462, 0.08461538461538462, 0.09230769230769231, 0.1076923076923077, 0.11538461538461539, 0.1, 0.1, 0.1, 0.1, 0.12307692307692308, 0.12307692307692308, 0.13846153846153847, 0.13846153846153847, 0.8307692307692308], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/MRP-L20.gap.json b/pfam_gap_rates/MRP-L20.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b8bb0ccbc33b33bff134f6137dd852aa17cbdf90
--- /dev/null
+++ b/pfam_gap_rates/MRP-L20.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/MRP-L46.gap.json b/pfam_gap_rates/MRP-L46.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..60034b4a97607c9744fe3bf1ccb72ef670119c5f
--- /dev/null
+++ b/pfam_gap_rates/MRP-L46.gap.json
@@ -0,0 +1 @@
+{"family": "MRP-L46", "n_seqs": 221, "length": 148, "gap_rates": [0.4841628959276018, 0.22171945701357465, 0.04072398190045249, 0.03619909502262444, 0.03167420814479638, 0.027149321266968326, 0.01809954751131222, 0.01809954751131222, 0.01809954751131222, 0.01809954751131222, 0.01809954751131222, 0.01809954751131222, 0.01809954751131222, 0.01809954751131222, 0.01809954751131222, 0.01809954751131222, 0.01809954751131222, 0.02262443438914027, 0.02262443438914027, 0.02262443438914027, 0.02262443438914027, 0.02262443438914027, 0.02262443438914027, 0.02262443438914027, 0.02262443438914027, 0.02262443438914027, 0.3936651583710407, 0.3936651583710407, 0.3936651583710407, 0.38009049773755654, 0.013574660633484163, 0.013574660633484163, 0.013574660633484163, 0.00904977375565611, 0.00904977375565611, 0.0, 0.013574660633484163, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.00904977375565611, 0.00904977375565611, 0.06787330316742081, 0.08597285067873303, 0.09049773755656108, 0.10407239819004525, 0.8235294117647058, 0.049773755656108594, 0.049773755656108594, 0.47058823529411764, 0.4343891402714932, 0.4117647058823529, 0.07692307692307693, 0.07239819004524888, 0.06787330316742081, 0.06787330316742081, 0.08144796380090498, 0.08144796380090498, 0.08597285067873303, 0.1085972850678733, 0.4660633484162896, 0.31221719457013575, 0.3167420814479638, 0.334841628959276, 0.29411764705882354, 0.23076923076923078, 0.20361990950226244, 0.19004524886877827, 0.17647058823529413, 0.167420814479638, 0.167420814479638, 0.167420814479638, 0.18099547511312217, 0.18552036199095023, 0.18099547511312217, 0.17647058823529413, 0.12669683257918551, 0.13122171945701358, 0.13122171945701358, 0.14027149321266968, 0.14027149321266968, 0.14479638009049775, 0.16289592760180996, 0.17647058823529413, 0.20361990950226244, 0.2081447963800905, 0.21266968325791855, 0.38461538461538464, 0.4072398190045249, 0.6108597285067874, 0.6334841628959276, 0.9411764705882353, 0.918552036199095, 0.6244343891402715, 0.5882352941176471, 0.4298642533936652, 0.5294117647058824, 0.5339366515837104, 0.5384615384615384, 0.5610859728506787, 0.5520361990950227, 0.5520361990950227, 0.5429864253393665, 0.4479638009049774, 0.6108597285067874, 0.6425339366515838, 0.669683257918552, 0.6787330316742082, 0.6923076923076923, 0.7104072398190046, 0.7330316742081447, 0.7647058823529411, 0.8597285067873304, 0.8733031674208145, 0.9366515837104072, 0.8778280542986425, 0.8597285067873304, 0.7963800904977375, 0.7420814479638009, 0.7330316742081447, 0.6968325791855203, 0.6923076923076923, 0.669683257918552, 0.6561085972850679, 0.6380090497737556, 0.5927601809954751, 0.47058823529411764, 0.46153846153846156, 0.43891402714932126, 0.3212669683257919, 0.3076923076923077, 0.29411764705882354, 0.2986425339366516, 0.3031674208144796, 0.3031674208144796, 0.3031674208144796, 0.3031674208144796, 0.31221719457013575, 0.3167420814479638], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/MRP-S25.gap.json b/pfam_gap_rates/MRP-S25.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..25e700a32cf257f181ee52eecc282c0843048af8
--- /dev/null
+++ b/pfam_gap_rates/MRP-S25.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/MRP-S33.gap.json b/pfam_gap_rates/MRP-S33.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e70b3d57d931379678c17c06c164da35b354f73a
--- /dev/null
+++ b/pfam_gap_rates/MRP-S33.gap.json
@@ -0,0 +1 @@
+{"family": "MRP-S33", "n_seqs": 255, "length": 96, "gap_rates": [0.6470588235294118, 0.29411764705882354, 0.22745098039215686, 0.1803921568627451, 0.16470588235294117, 0.09411764705882353, 0.06274509803921569, 0.047058823529411764, 0.043137254901960784, 0.043137254901960784, 0.043137254901960784, 0.0392156862745098, 0.0392156862745098, 0.0392156862745098, 0.0392156862745098, 0.050980392156862744, 0.047058823529411764, 0.03529411764705882, 0.03137254901960784, 0.0392156862745098, 0.38823529411764707, 0.050980392156862744, 0.0392156862745098, 0.0196078431372549, 0.0196078431372549, 0.0196078431372549, 0.0196078431372549, 0.0196078431372549, 0.0196078431372549, 0.0196078431372549, 0.0196078431372549, 0.0196078431372549, 0.0196078431372549, 0.0196078431372549, 0.0196078431372549, 0.01568627450980392, 0.01568627450980392, 0.01568627450980392, 0.6901960784313725, 0.7372549019607844, 0.9215686274509803, 0.7372549019607844, 0.6901960784313725, 0.6901960784313725, 0.00784313725490196, 0.00784313725490196, 0.00784313725490196, 0.00784313725490196, 0.011764705882352941, 0.8980392156862745, 0.596078431372549, 0.023529411764705882, 0.027450980392156862, 0.03137254901960784, 0.0392156862745098, 0.027450980392156862, 0.0392156862745098, 0.0392156862745098, 0.03137254901960784, 0.054901960784313725, 0.08235294117647059, 0.10196078431372549, 0.10196078431372549, 0.10588235294117647, 0.12549019607843137, 0.13333333333333333, 0.37254901960784315, 0.8549019607843137, 0.11764705882352941, 0.08235294117647059, 0.043137254901960784, 0.043137254901960784, 0.03529411764705882, 0.0196078431372549, 0.0196078431372549, 0.00784313725490196, 0.00784313725490196, 0.00784313725490196, 0.011764705882352941, 0.01568627450980392, 0.01568627450980392, 0.011764705882352941, 0.023529411764705882, 0.027450980392156862, 0.03137254901960784, 0.043137254901960784, 0.043137254901960784, 0.047058823529411764, 0.047058823529411764, 0.047058823529411764, 0.047058823529411764, 0.047058823529411764, 0.12156862745098039, 0.13333333333333333, 0.17254901960784313, 0.2], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/MT-A70.gap.json b/pfam_gap_rates/MT-A70.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..dfe90de9e2978261ffe5f44d6e375397e4253984
--- /dev/null
+++ b/pfam_gap_rates/MT-A70.gap.json
@@ -0,0 +1 @@
+{"family": "MT-A70", "n_seqs": 831, "length": 200, "gap_rates": [0.22984356197352587, 0.19494584837545126, 0.1829121540312876, 0.17087845968712395, 0.1624548736462094, 0.1588447653429603, 0.1588447653429603, 0.15643802647412755, 0.1552346570397112, 0.1552346570397112, 0.15643802647412755, 0.15643802647412755, 0.15643802647412755, 0.1648616125150421, 0.4464500601684717, 0.4259927797833935, 0.42117930204572807, 0.42839951865222625, 0.44885679903730447, 0.6510228640192539, 0.7785800240673887, 0.8760529482551144, 0.9446450060168472, 0.9362214199759326, 0.8170878459687124, 0.7316486161251504, 0.6040914560770156, 0.296028880866426, 0.2719614921780987, 0.18170878459687123, 0.17569193742478942, 0.1684717208182912, 0.15764139590854392, 0.13237063778580024, 0.10830324909747292, 0.10348977135980746, 0.08784596871239471, 0.0842358604091456, 0.08303249097472924, 0.08182912154031288, 0.07942238267148015, 0.07942238267148015, 0.08062575210589651, 0.08062575210589651, 0.07942238267148015, 0.08062575210589651, 0.07821901323706378, 0.07460890493381468, 0.07340553549939831, 0.06979542719614922, 0.9314079422382672, 0.07220216606498195, 0.34777376654632974, 0.07099879663056559, 0.06979542719614922, 0.06859205776173286, 0.06738868832731648, 0.06618531889290012, 0.06738868832731648, 0.06618531889290012, 0.06618531889290012, 0.06738868832731648, 0.07099879663056559, 0.07099879663056559, 0.07099879663056559, 0.06979542719614922, 0.07220216606498195, 0.7858002406738869, 0.9470517448856799, 0.9422382671480144, 0.7460890493381468, 0.6137184115523465, 0.08062575210589651, 0.07821901323706378, 0.07821901323706378, 0.07821901323706378, 0.07942238267148015, 0.08062575210589651, 0.0842358604091456, 0.08303249097472924, 0.07942238267148015, 0.08062575210589651, 0.07942238267148015, 0.07821901323706378, 0.07821901323706378, 0.9073405535499398, 0.07701564380264742, 0.07701564380264742, 0.07701564380264742, 0.07701564380264742, 0.07701564380264742, 0.07701564380264742, 0.07821901323706378, 0.07701564380264742, 0.22984356197352587, 0.11672683513838748, 0.11672683513838748, 0.11070998796630566, 0.10830324909747292, 0.10830324909747292, 0.10830324909747292, 0.8592057761732852, 0.941034897713598, 0.8231046931407943, 0.32250300842358604, 0.25150421179302046, 0.1793020457280385, 0.12154031287605295, 0.11070998796630566, 0.20938628158844766, 0.17809867629362214, 0.08664259927797834, 0.08303249097472924, 0.08182912154031288, 0.08062575210589651, 0.07821901323706378, 0.07942238267148015, 0.07942238267148015, 0.08062575210589651, 0.08062575210589651, 0.07821901323706378, 0.07821901323706378, 0.08543922984356198, 0.08664259927797834, 0.08784596871239471, 0.0914560770156438, 0.0914560770156438, 0.11552346570397112, 0.309265944645006, 0.2996389891696751, 0.309265944645006, 0.40794223826714804, 0.42478941034897716, 0.7111913357400722, 0.4620938628158845, 0.35379061371841153, 0.3622141997593261, 0.29121540312876054, 0.24548736462093862, 0.19855595667870035, 0.9362214199759326, 0.9061371841155235, 0.12033694344163658, 0.08664259927797834, 0.08303249097472924, 0.0842358604091456, 0.08182912154031288, 0.08182912154031288, 0.08062575210589651, 0.7954271961492179, 0.9470517448856799, 0.7015643802647413, 0.08303249097472924, 0.08543922984356198, 0.08664259927797834, 0.0914560770156438, 0.0914560770156438, 0.09025270758122744, 0.09025270758122744, 0.09025270758122744, 0.08904933814681107, 0.09025270758122744, 0.18531889290012032, 0.09987966305655836, 0.09987966305655836, 0.098676293622142, 0.098676293622142, 0.09747292418772563, 0.098676293622142, 0.10108303249097472, 0.12394705174488568, 0.098676293622142, 0.8880866425992779, 0.9290012033694344, 0.8182912154031288, 0.10709987966305656, 0.148014440433213, 0.11672683513838748, 0.10709987966305656, 0.10589651022864019, 0.10589651022864019, 0.10709987966305656, 0.1095066185318893, 0.11311672683513839, 0.12274368231046931, 0.12394705174488568, 0.12515042117930206, 0.5475330926594465, 0.5439229843561973, 0.12515042117930206, 0.12755716004813478, 0.13237063778580024, 0.13598074608904934, 0.1371841155234657, 0.1444043321299639, 0.14921780986762936, 0.16004813477737664, 0.19133574007220217, 0.19614921780986763, 0.32250300842358604], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/MTS.gap.json b/pfam_gap_rates/MTS.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e1cbd87ea8b1a397d571522d2b0d23a5a4734374
--- /dev/null
+++ b/pfam_gap_rates/MTS.gap.json
@@ -0,0 +1 @@
+{"family": "MTS", "n_seqs": 4806, "length": 184, "gap_rates": [0.8780690803162713, 0.8272992093216812, 0.7985851019558885, 0.789846025801082, 0.7829796088223054, 0.7769454848106534, 0.7727840199750312, 0.7711194340407823, 0.7694548481065335, 0.7682064086558469, 0.7682064086558469, 0.768414481897628, 0.7910944652517686, 0.7719517270079068, 0.7711194340407823, 0.7663337494798169, 0.7717436537661256, 0.756762380357886, 0.6970453599667082, 0.6223470661672909, 0.5235122763212651, 0.48044111527257594, 0.4427798585101956, 0.41427382438618393, 0.39055347482313774, 0.35143570536828966, 0.33208489388264667, 0.31273408239700373, 0.3312526009155223, 0.7890137328339576, 0.9315439034540158, 0.885143570536829, 0.6275488972118186, 0.1762380357885976, 0.1287973366625052, 0.08489388264669163, 0.029754473574698292, 0.012484394506866416, 0.010403662089055347, 0.009779442363712027, 0.009155222638368706, 0.008739076154806492, 0.008114856429463172, 0.007698709945900957, 0.00749063670411985, 0.007698709945900957, 0.007698709945900957, 0.00749063670411985, 0.008322929671244279, 0.008739076154806492, 0.008114856429463172, 0.007698709945900957, 0.0070744902205576365, 0.007282563462338743, 0.019350811485642945, 0.013316687473990845, 0.015605493133583021, 0.018726591760299626, 0.2009987515605493, 0.08031627132750728, 0.9398668331252601, 0.007906783187682065, 0.00686641697877653, 0.0056179775280898875, 0.0056179775280898875, 0.0056179775280898875, 0.005826050769870994, 0.005826050769870994, 0.006034124011652101, 0.0070744902205576365, 0.00749063670411985, 0.008114856429463172, 0.008322929671244279, 0.008322929671244279, 0.008114856429463172, 0.007698709945900957, 0.0089471493965876, 0.009987515605493134, 0.013108614232209739, 0.013316687473990845, 0.0149812734082397, 0.018310445276737412, 0.0178942987931752, 0.04910528506034124, 0.054307116104868915, 0.5158135663753641, 0.9132334581772784, 0.9400749063670412, 0.8828547648772368, 0.36121514773200164, 0.029754473574698292, 0.0239284228048273, 0.021639617145235122, 0.020599250936329586, 0.021431543903454017, 0.020807324178110695, 0.021639617145235122, 0.021431543903454017, 0.02372034956304619, 0.027049521431543905, 0.028089887640449437, 0.03454015813566375, 0.03911776945484811, 0.8116937161880982, 0.8830628381190179, 0.739284228048273, 0.23928422804827298, 0.06075738660008323, 0.04702455264253017, 0.0328755722014149, 0.03245942571785269, 0.0328755722014149, 0.033291718684977115, 0.03474823137744486, 0.03745318352059925, 0.03870162297128589, 0.03911776945484811, 0.03974198918019143, 0.042863087806908035, 0.10674157303370786, 0.18123179359134414, 0.22679983354140656, 0.2698709945900957, 0.3302122347066167, 0.6017478152309613, 0.6300457761131918, 0.6531419059508947, 0.6629213483146067, 0.5819808572617562, 0.5932168123179359, 0.6009155222638368, 0.6073657927590512, 0.6138160632542655, 0.6202663337494798, 0.6250520183104453, 0.630461922596754, 0.6352476071577196, 0.6429463171036205, 0.6479400749063671, 0.653558052434457, 0.6558468580940491, 0.6612567623803579, 0.6645859342488556, 0.6660424469413233, 0.6679151061173533, 0.6722846441947565, 0.6729088639200999, 0.6747815230961298, 0.6779026217228464, 0.6880982105701207, 0.6972534332084894, 0.7211818560133166, 0.7596754057428214, 0.7761131918435289, 0.787973366625052, 0.7933832709113608, 0.7952559300873908, 0.7967124427798585, 0.7994173949230129, 0.8017062005826051, 0.9173949230129005, 0.9217644610903037, 0.9153141905950894, 0.807324178110695, 0.8089887640449438, 0.8119017894298793, 0.8154390345401581, 0.8156471077819393, 0.8179359134415314, 0.821057012068248, 0.8227215980024969, 0.8248023304203079, 0.826883062838119, 0.8291718684977112, 0.83270911360799, 0.8320848938826467, 0.8325010403662089, 0.8333333333333334, 0.8337494798168955, 0.8339575530586767, 0.83458177278402, 0.8358302122347067, 0.846233874323762, 0.9323761964211402], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/MTS_N.gap.json b/pfam_gap_rates/MTS_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..481c13cc00bebd7dcd7965e0fa9b3d4166ca713b
--- /dev/null
+++ b/pfam_gap_rates/MTS_N.gap.json
@@ -0,0 +1 @@
+{"family": "MTS_N", "n_seqs": 126, "length": 164, "gap_rates": [0.42857142857142855, 0.373015873015873, 0.35714285714285715, 0.35714285714285715, 0.35714285714285715, 0.3492063492063492, 0.3492063492063492, 0.3412698412698413, 0.3333333333333333, 0.3333333333333333, 0.3333333333333333, 0.3333333333333333, 0.3253968253968254, 0.3253968253968254, 0.4603174603174603, 0.3412698412698413, 0.31746031746031744, 0.31746031746031744, 0.31746031746031744, 0.31746031746031744, 0.31746031746031744, 0.31746031746031744, 0.31746031746031744, 0.30952380952380953, 0.30952380952380953, 0.30158730158730157, 0.30952380952380953, 0.29365079365079366, 0.29365079365079366, 0.29365079365079366, 0.2857142857142857, 0.30952380952380953, 0.3333333333333333, 0.30952380952380953, 0.2619047619047619, 0.36507936507936506, 0.30158730158730157, 0.2857142857142857, 0.2777777777777778, 0.4365079365079365, 0.42063492063492064, 0.23015873015873015, 0.2222222222222222, 0.21428571428571427, 0.21428571428571427, 0.2222222222222222, 0.2222222222222222, 0.2222222222222222, 0.2222222222222222, 0.21428571428571427, 0.24603174603174602, 0.24603174603174602, 0.23809523809523808, 0.25396825396825395, 0.2619047619047619, 0.2619047619047619, 0.9206349206349206, 0.9444444444444444, 0.8015873015873016, 0.5952380952380952, 0.2777777777777778, 0.2222222222222222, 0.18253968253968253, 0.15873015873015872, 0.12698412698412698, 0.12698412698412698, 0.11904761904761904, 0.11904761904761904, 0.11904761904761904, 0.15079365079365079, 0.24603174603174602, 0.7222222222222222, 0.9365079365079365, 0.6666666666666666, 0.06349206349206349, 0.06349206349206349, 0.06349206349206349, 0.03968253968253968, 0.03968253968253968, 0.031746031746031744, 0.031746031746031744, 0.031746031746031744, 0.031746031746031744, 0.031746031746031744, 0.031746031746031744, 0.031746031746031744, 0.031746031746031744, 0.031746031746031744, 0.031746031746031744, 0.031746031746031744, 0.031746031746031744, 0.031746031746031744, 0.031746031746031744, 0.031746031746031744, 0.031746031746031744, 0.031746031746031744, 0.031746031746031744, 0.031746031746031744, 0.023809523809523808, 0.023809523809523808, 0.031746031746031744, 0.023809523809523808, 0.023809523809523808, 0.07936507936507936, 0.031746031746031744, 0.031746031746031744, 0.023809523809523808, 0.023809523809523808, 0.023809523809523808, 0.023809523809523808, 0.023809523809523808, 0.023809523809523808, 0.023809523809523808, 0.023809523809523808, 0.023809523809523808, 0.031746031746031744, 0.031746031746031744, 0.031746031746031744, 0.031746031746031744, 0.031746031746031744, 0.047619047619047616, 0.047619047619047616, 0.047619047619047616, 0.047619047619047616, 0.047619047619047616, 0.05555555555555555, 0.07142857142857142, 0.0873015873015873, 0.1111111111111111, 0.626984126984127, 0.15079365079365079, 0.15873015873015872, 0.1746031746031746, 0.1746031746031746, 0.19047619047619047, 0.21428571428571427, 0.2222222222222222, 0.21428571428571427, 0.21428571428571427, 0.21428571428571427, 0.21428571428571427, 0.21428571428571427, 0.21428571428571427, 0.21428571428571427, 0.2222222222222222, 0.23809523809523808, 0.24603174603174602, 0.24603174603174602, 0.25396825396825395, 0.2777777777777778, 0.29365079365079366, 0.3333333333333333, 0.3412698412698413, 0.6349206349206349, 0.36507936507936506, 0.36507936507936506, 0.373015873015873, 0.38095238095238093, 0.38095238095238093, 0.38095238095238093, 0.3968253968253968, 0.4523809523809524, 0.47619047619047616, 0.5952380952380952], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Mab-21.gap.json b/pfam_gap_rates/Mab-21.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..395f3eca104c0d56e68237efba0d53bd068fd5ca
--- /dev/null
+++ b/pfam_gap_rates/Mab-21.gap.json
@@ -0,0 +1 @@
+{"family": "Mab-21", "n_seqs": 469, "length": 355, "gap_rates": [0.8656716417910447, 0.5565031982942431, 0.5437100213219617, 0.5266524520255863, 0.5266524520255863, 0.5159914712153518, 0.5053304904051172, 0.5010660980810234, 0.5010660980810234, 0.4989339019189765, 0.4989339019189765, 0.4968017057569296, 0.4968017057569296, 0.4968017057569296, 0.4968017057569296, 0.4968017057569296, 0.4968017057569296, 0.4968017057569296, 0.4968017057569296, 0.4968017057569296, 0.7484008528784648, 0.746268656716418, 0.7931769722814499, 0.7825159914712153, 0.7825159914712153, 0.5031982942430704, 0.5884861407249466, 0.6012793176972282, 0.5842217484008528, 0.5714285714285714, 0.5671641791044776, 0.5692963752665245, 0.5607675906183369, 0.5522388059701493, 0.5415778251599147, 0.5415778251599147, 0.5458422174840085, 0.5415778251599147, 0.535181236673774, 0.5373134328358209, 0.5330490405117271, 0.535181236673774, 0.535181236673774, 0.5309168443496801, 0.5330490405117271, 0.9019189765458422, 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\ No newline at end of file
diff --git a/pfam_gap_rates/Macoilin.gap.json b/pfam_gap_rates/Macoilin.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f264697a1e56de443464e1acf342a4dab54c6ae4
--- /dev/null
+++ b/pfam_gap_rates/Macoilin.gap.json
@@ -0,0 +1 @@
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diff --git a/pfam_gap_rates/Mad3_BUB1_I.gap.json b/pfam_gap_rates/Mad3_BUB1_I.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f76ab193ad448b2455c38ba610ed6819b9937030
--- /dev/null
+++ b/pfam_gap_rates/Mad3_BUB1_I.gap.json
@@ -0,0 +1 @@
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diff --git a/pfam_gap_rates/Malate_synthase.gap.json b/pfam_gap_rates/Malate_synthase.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..87078a30eb73cfe83a5e087aea3a9b5aa39b9bf3
--- /dev/null
+++ b/pfam_gap_rates/Malate_synthase.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Med4.gap.json b/pfam_gap_rates/Med4.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..18449949e48f588d69292bc8f5381a574c4acb0d
--- /dev/null
+++ b/pfam_gap_rates/Med4.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Med9.gap.json b/pfam_gap_rates/Med9.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..8b53e399cf25e8b137a4eeb0c34dc0ebc475b9ef
--- /dev/null
+++ b/pfam_gap_rates/Med9.gap.json
@@ -0,0 +1 @@
+{"family": "Med9", "n_seqs": 160, "length": 104, "gap_rates": [0.625, 0.4875, 0.45, 0.4375, 0.425, 0.41875, 0.40625, 0.4, 0.39375, 0.38125, 0.375, 0.3625, 0.33125, 0.94375, 0.95, 0.9375, 0.30625, 0.275, 0.225, 0.175, 0.73125, 0.76875, 0.83125, 0.9375, 0.94375, 0.95, 0.95, 0.95, 0.95, 0.95, 0.95, 0.94375, 0.94375, 0.925, 0.8125, 0.7375, 0.7, 0.5, 0.25, 0.15625, 0.11875, 0.01875, 0.01875, 0.01875, 0.025, 0.01875, 0.01875, 0.0125, 0.0125, 0.0125, 0.0125, 0.0125, 0.0125, 0.0125, 0.0125, 0.0125, 0.00625, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.00625, 0.00625, 0.00625, 0.93125, 0.9375, 0.9375, 0.93125, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0125, 0.00625, 0.00625, 0.00625, 0.0125, 0.0125, 0.0125, 0.01875, 0.01875, 0.025, 0.0375, 0.0625, 0.10625, 0.1625, 0.2, 0.48125, 0.7125], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Membr_traf_MHD.gap.json b/pfam_gap_rates/Membr_traf_MHD.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..749a0513a94e5b221a486a585eef09f5bfe51bdf
--- /dev/null
+++ b/pfam_gap_rates/Membr_traf_MHD.gap.json
@@ -0,0 +1 @@
+{"family": "Membr_traf_MHD", "n_seqs": 319, "length": 191, "gap_rates": [0.6520376175548589, 0.19435736677115986, 0.18181818181818182, 0.1786833855799373, 0.1786833855799373, 0.1786833855799373, 0.1755485893416928, 0.1755485893416928, 0.1755485893416928, 0.1724137931034483, 0.1724137931034483, 0.1724137931034483, 0.16927899686520376, 0.16927899686520376, 0.16927899686520376, 0.16300940438871472, 0.15987460815047022, 0.15673981191222572, 0.1536050156739812, 0.1536050156739812, 0.1536050156739812, 0.1536050156739812, 0.1536050156739812, 0.1536050156739812, 0.1536050156739812, 0.1536050156739812, 0.15047021943573669, 0.15047021943573669, 0.15047021943573669, 0.15047021943573669, 0.15047021943573669, 0.14733542319749215, 0.14733542319749215, 0.14733542319749215, 0.14733542319749215, 0.14733542319749215, 0.14733542319749215, 0.14733542319749215, 0.14733542319749215, 0.14733542319749215, 0.14106583072100312, 0.14733542319749215, 0.15987460815047022, 0.6081504702194357, 0.16927899686520376, 0.1755485893416928, 0.1786833855799373, 0.1755485893416928, 0.1786833855799373, 0.1786833855799373, 0.1786833855799373, 0.18181818181818182, 0.18181818181818182, 0.19435736677115986, 0.20689655172413793, 0.5360501567398119, 0.7147335423197492, 0.7366771159874608, 0.8213166144200627, 0.8275862068965517, 0.8463949843260188, 0.8557993730407524, 0.9184952978056427, 0.9435736677115988, 0.9498432601880877, 0.9435736677115988, 0.9341692789968652, 0.9122257053291536, 0.8495297805642633, 0.8338557993730408, 0.8275862068965517, 0.8181818181818182, 0.7084639498432602, 0.6614420062695925, 0.6394984326018809, 0.6112852664576802, 0.6112852664576802, 0.7523510971786834, 0.7617554858934169, 0.7711598746081505, 0.7586206896551724, 0.6081504702194357, 0.5893416927899686, 0.5893416927899686, 0.5893416927899686, 0.5924764890282131, 0.5987460815047022, 0.5987460815047022, 0.6112852664576802, 0.6050156739811913, 0.6018808777429467, 0.6112852664576802, 0.6144200626959248, 0.6426332288401254, 0.6238244514106583, 0.768025078369906, 0.890282131661442, 0.8934169278996865, 0.8934169278996865, 0.8934169278996865, 0.9028213166144201, 0.9184952978056427, 0.9184952978056427, 0.9184952978056427, 0.9122257053291536, 0.8996865203761756, 0.8934169278996865, 0.8934169278996865, 0.890282131661442, 0.768025078369906, 0.768025078369906, 0.6112852664576802, 0.6959247648902821, 0.5047021943573667, 0.774294670846395, 0.7398119122257053, 0.6018808777429467, 0.45768025078369906, 0.19122257053291536, 0.18495297805642633, 0.18495297805642633, 0.20376175548589343, 0.1786833855799373, 0.1755485893416928, 0.16927899686520376, 0.16927899686520376, 0.16927899686520376, 0.13793103448275862, 0.11912225705329153, 0.12225705329153605, 0.11912225705329153, 0.109717868338558, 0.10031347962382445, 0.10031347962382445, 0.10031347962382445, 0.10031347962382445, 0.09717868338557993, 0.09717868338557993, 0.09717868338557993, 0.10031347962382445, 0.09404388714733543, 0.09717868338557993, 0.09404388714733543, 0.9216300940438872, 0.9278996865203761, 0.9373040752351097, 0.9278996865203761, 0.9278996865203761, 0.9216300940438872, 0.09717868338557993, 0.09717868338557993, 0.09717868338557993, 0.8808777429467085, 0.896551724137931, 0.9278996865203761, 0.8996865203761756, 0.890282131661442, 0.8808777429467085, 0.09717868338557993, 0.09717868338557993, 0.09404388714733543, 0.09404388714733543, 0.09404388714733543, 0.09404388714733543, 0.09404388714733543, 0.5924764890282131, 0.09717868338557993, 0.09404388714733543, 0.09404388714733543, 0.09404388714733543, 0.09404388714733543, 0.09404388714733543, 0.09404388714733543, 0.09404388714733543, 0.09717868338557993, 0.09717868338557993, 0.09717868338557993, 0.09717868338557993, 0.10031347962382445, 0.10031347962382445, 0.10344827586206896, 0.10344827586206896, 0.10344827586206896, 0.10344827586206896, 0.109717868338558, 0.109717868338558, 0.11285266457680251, 0.11285266457680251, 0.15047021943573669, 0.1786833855799373, 0.46394984326018807], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Methylase_S.gap.json b/pfam_gap_rates/Methylase_S.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..31403cf4b83197d0b4f0126cb793296a540cfbc5
--- /dev/null
+++ b/pfam_gap_rates/Methylase_S.gap.json
@@ -0,0 +1 @@
+{"family": "Methylase_S", "n_seqs": 3854, "length": 216, "gap_rates": [0.7462376751427089, 0.6242864556305138, 0.4766476388168137, 0.42241826673585886, 0.3907628437986507, 0.3598858329008822, 0.32304099636741046, 0.30176440062272963, 0.2911261027503892, 0.2841203943954333, 0.2804878048780488, 0.27841203943954335, 0.2742605085625324, 0.28489880643487286, 0.2747794499221588, 0.935391800726518, 0.8318629994810587, 0.2963155163466528, 0.2846393357550597, 0.2675142708873897, 0.26336274001037885, 0.25765438505448884, 0.2527244421380384, 0.24935132330046705, 0.2776336274001038, 0.3692267773741567, 0.86377789309808, 0.694862480539699, 0.26180591593149977, 0.2348209652309289, 0.21665801764400622, 0.20550077841203945, 0.200570835495589, 0.1964193046185781, 0.1925272444213804, 0.2514270887389725, 0.9496626881162429, 0.9250129735339907, 0.17592112091333678, 0.17099117799688635, 0.16969382459782045, 0.1689154125583809, 0.16995329527763361, 0.17151011935651272, 0.6546445251686559, 0.2913855734302024, 0.29605604566683963, 0.2952776336274001, 0.2662169174883238, 0.4270887389724961, 0.47197716658017647, 0.5241307732226258, 0.6590555267254801, 0.8993253762324858, 0.9475869226777374, 0.8038401660612351, 0.5672029060716139, 0.4974052932018682, 0.4481058640373638, 0.401141670991178, 0.36351842241826676, 0.33523611831863, 0.3183705241307732, 0.2950181629475869, 0.14660093409444733, 0.13959522573949143, 0.13648157758173327, 0.12843798650752464, 0.12272963155163466, 0.1141670991177997, 0.1071613907628438, 0.10145303580695382, 0.0975609756097561, 0.09237156201349248, 0.08666320705760248, 0.1167618059159315, 0.8881681370005189, 0.08536585365853659, 0.07213284898806435, 0.06850025947067981, 0.06772184743124027, 0.06564608199273482, 0.06486766995329528, 0.0646081992734821, 0.07939802802283343, 0.0892579138557343, 0.7138038401660612, 0.8092890503373119, 0.9122989102231448, 0.8847950181629476, 0.7368967306694344, 0.5448884276076803, 0.07939802802283343, 0.06434872859366891, 0.06123508043591074, 0.05889984431759211, 0.05578619615983394, 0.05319148936170213, 0.053710430721328487, 0.0508562532433835, 0.05033731188375713, 0.04852101712506487, 0.048261546445251685, 0.7742605085625325, 0.8515827711468604, 0.7288531395952257, 0.06564608199273482, 0.9325376232485729, 0.9473274519979242, 0.922677737415672, 0.06979761286974571, 0.9470679813181111, 0.9102231447846393, 0.04229372080954852, 0.036585365853658534, 0.03528801245459263, 0.03528801245459263, 0.03476907109496627, 0.03450960041515309, 0.03399065905552673, 0.03347171769590036, 0.0316554229372081, 0.0316554229372081, 0.03943954333160353, 0.1567202906071614, 0.3531395952257395, 0.8469122989102231, 0.2213284898806435, 0.1331084587441619, 0.0755059678256357, 0.09548521017125065, 0.9379865075246497, 0.30695381421899326, 0.05163466528282304, 0.03502854177477945, 0.03009859885832901, 0.02776336274001038, 0.026984950700570835, 0.026466009340944473, 0.026984950700570835, 0.03969901401141671, 0.6974571873378308, 0.9426569797612869, 0.6193565127140633, 0.05786196159833939, 0.05864037363777893, 0.11053450960041515, 0.08822003113648158, 0.8834976647638817, 0.9444732745199792, 0.9234561494551116, 0.8559937727036845, 0.036066424494032176, 0.0371043072132849, 0.03554748313440581, 0.03632589517384536, 0.09704203425012974, 0.8508043591074209, 0.9242345614945511, 0.9026984950700571, 0.7833419823559937, 0.04852101712506487, 0.031136481577581733, 0.02101712506486767, 0.01842241826673586, 0.01816294758692268, 0.01842241826673586, 0.05812143227815257, 0.021795537104307212, 0.019979242345614944, 0.017384535547483135, 0.017644006227296314, 0.017384535547483135, 0.01634665282823041, 0.015308770108977686, 0.015568240788790867, 0.01582771146860405, 0.01634665282823041, 0.01816294758692268, 0.01868188894654904, 0.020238713025428127, 0.024909185262065387, 0.026466009340944473, 0.03243383497664764, 0.03736377789309808, 0.9200830306175403, 0.04696419304618578, 0.06071613907628438, 0.05967825635703165, 0.06097560975609756, 0.06279190451478983, 0.06668396471198755, 0.07031655422937208, 0.07602490918526207, 0.0892579138557343, 0.09963674104826155, 0.10742086144265697, 0.11857810067462377, 0.13518422418266735, 0.14582252205500779, 0.1564608199273482, 0.7815256875973015, 0.3419823559937727, 0.3492475350285418, 0.299429164504411, 0.2872340425531915, 0.30565646081992737, 0.3279709392838609, 0.3749351323300467, 0.4138557343020239, 0.47716658017644004, 0.5350285417747794, 0.6097560975609756, 0.6408925791385574, 0.7298910223144784, 0.9346133886870783], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Methyltransf_24.gap.json b/pfam_gap_rates/Methyltransf_24.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..61515b167d11e106796ed3bbdc6f927cfdcd82c6
--- /dev/null
+++ b/pfam_gap_rates/Methyltransf_24.gap.json
@@ -0,0 +1 @@
+{"family": "Methyltransf_24", "n_seqs": 1217, "length": 180, "gap_rates": [0.2530813475760066, 0.09120788824979457, 0.08216926869350863, 0.07888249794576828, 0.1914543960558751, 0.1914543960558751, 0.07066557107641742, 0.06491372226787182, 0.06409202958093672, 0.0657354149548069, 0.06737880032867707, 0.0657354149548069, 0.06491372226787182, 0.06409202958093672, 0.06491372226787182, 0.11503697617091208, 0.12736236647493837, 0.12489728841413311, 0.09531635168447, 0.08709942481511915, 0.0838126540673788, 0.11339359079704191, 0.27198027937551356, 0.8783894823336073, 0.9202958093672966, 0.9375513557929335, 0.9063270336894002, 0.7444535743631882, 0.4527526705012325, 0.1848808545603944, 0.05505341002465078, 0.04272801972062449, 0.04026294165981923, 0.038619556285949055, 0.03779786359901397, 0.03779786359901397, 0.03944124897288414, 0.041084634346754315, 0.30156121610517667, 0.6113393590797042, 0.6680361544782252, 0.7082990961380444, 0.7559572719802794, 0.7855382087099425, 0.8241577649958916, 0.8553820870994249, 0.8824979457682827, 0.8997534921939194, 0.9153656532456861, 0.9359079704190633, 0.9449465899753492, 0.9260476581758422, 0.9104354971240756, 0.8907148726376335, 0.866885784716516, 0.8414133114215283, 0.799506984387839, 0.7691043549712407, 0.7304847986852917, 0.6910435497124076, 0.6409202958093673, 0.4486442070665571, 0.31388660640920296, 0.3771569433032046, 0.14215283483976993, 0.16598192276088744, 0.15119145439605589, 0.12982744453574363, 0.11914543960558752, 0.114215283483977, 0.0895645028759244, 0.9334428923582581, 0.934264585045193, 0.934264585045193, 0.9416598192276089, 0.942481511914544, 0.9449465899753492, 0.9474116680361545, 0.9482333607230896, 0.9457682826622843, 0.9433032046014791, 0.942481511914544, 0.9350862777321282, 0.934264585045193, 0.9334428923582581, 0.9334428923582581, 0.06984387838948233, 0.6310599835661462, 0.7567789646672145, 0.8603122432210353, 0.8907148726376335, 0.9161873459326212, 0.9465899753492194, 0.9046836483155299, 0.876746096959737, 0.8405916187345933, 0.695152013147083, 0.5825801150369762, 0.13475760065735415, 0.08463434675431389, 0.0714872637633525, 0.04847986852917009, 0.04519309778142974, 0.0419063270336894, 0.9276910435497124, 0.029580936729663106, 0.02629416598192276, 0.027115858668857847, 0.027115858668857847, 0.024650780608052588, 0.025472473294987676, 0.025472473294987676, 0.021364009860312245, 0.8751027115858668, 0.9022185702547247, 0.9161873459326212, 0.9367296631059984, 0.9433032046014791, 0.9260476581758422, 0.9079704190632704, 0.8964667214461791, 0.8677074774034511, 0.02218570254724733, 0.03697617091207888, 0.03533278553820871, 0.05012325390304026, 0.049301561216105176, 0.04519309778142974, 0.051766639276910435, 0.029580936729663106, 0.6458504519309778, 0.8315529991783073, 0.9276910435497124, 0.9449465899753492, 0.9030402629416598, 0.7764995891536566, 0.5965488907148726, 0.32210353327855384, 0.06409202958093672, 0.007395234182415777, 0.005751848808545604, 0.003286770747740345, 0.003286770747740345, 0.003286770747740345, 0.003286770747740345, 0.0024650780608052587, 0.003286770747740345, 0.04026294165981923, 0.08709942481511915, 0.1741988496302383, 0.10024650780608052, 0.03944124897288414, 0.9202958093672966, 0.9285127362366475, 0.9178307313064914, 0.024650780608052588, 0.007395234182415777, 0.0049301561216105174, 0.005751848808545604, 0.009038619556285949, 0.014790468364831553, 0.009038619556285949, 0.008216926869350863, 0.010682004930156122, 0.007395234182415777, 0.009038619556285949, 0.012325390304026294, 0.013968775677896467, 0.01725554642563681, 0.018898931799506986, 0.023007395234182416, 0.025472473294987676, 0.025472473294987676, 0.0238290879211175, 0.025472473294987676, 0.02629416598192276, 0.03204601479046836, 0.0419063270336894, 0.062448644207066556, 0.2933442892358258], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Methyltransf_31.gap.json b/pfam_gap_rates/Methyltransf_31.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..7aa8c230dfbc1f51c78581819988699e9841c75d
--- /dev/null
+++ b/pfam_gap_rates/Methyltransf_31.gap.json
@@ -0,0 +1 @@
+{"family": "Methyltransf_31", "n_seqs": 4501, "length": 202, "gap_rates": [0.7360586536325261, 0.476338591424128, 0.27460564319040215, 0.17951566318595868, 0.08242612752721618, 0.042435014441235284, 0.02999333481448567, 0.027771606309708954, 0.023550322150633192, 0.022661630748722506, 0.02199511219728949, 0.021550766496334146, 0.02066207509442346, 0.021106420795378805, 0.020884247944901135, 0.019551210842035104, 0.01910686514107976, 0.018440346589646744, 0.018218173739169074, 0.017996000888691403, 0.017329482337258388, 0.4714507887136192, 0.9457898244834482, 0.08864696734059098, 0.15796489668962452, 0.149522328371473, 0.1708509220173295, 0.15241057542768274, 0.06554099089091313, 0.034658964674516776, 0.017107309486780714, 0.013996889580093312, 0.009109086869584537, 0.008886914019106865, 0.008442568318151522, 0.008442568318151522, 0.00933125972006221, 0.00933125972006221, 0.009775605421017552, 0.007776049766718507, 0.006443012663852477, 0.006887358364807821, 0.005998666962897134, 0.005332148411464119, 0.0051099755609864475, 0.0051099755609864475, 0.9393468118195957, 0.9473450344367919, 0.9446789602310598, 0.9320151077538325, 0.04176849588980227, 0.1166407465007776, 0.10486558542546101, 0.12574983337036214, 0.11086425238835815, 0.08042657187291713, 0.049322372806043104, 0.07020662075094423, 0.9315707620528771, 0.730726505221062, 0.09086869584536769, 0.045545434347922686, 0.03821373028215952, 0.03354810042212841, 0.03221506331926239, 0.03221506331926239, 0.03221506331926239, 0.03310375472117307, 0.0344367918240391, 0.03554765607642746, 0.036214174627860474, 0.7193956898467008, 0.051099755609864475, 0.053765829815596536, 0.5187736058653633, 0.6029771161964008, 0.8309264607864919, 0.2939346811819596, 0.2779382359475672, 0.36303043768051546, 0.9186847367251721, 0.9437902688291491, 0.9320151077538325, 0.9009109086869584, 0.13441457453899133, 0.10397689402355033, 0.08175960897578316, 0.07953788047100645, 0.07509442346145301, 0.08109309042435014, 0.08264830037769384, 0.08798044878915796, 0.11641857365029994, 0.8671406354143524, 0.8724727838258165, 0.8769162408353699, 0.880248833592535, 0.8873583648078205, 0.8889135747611642, 0.8931348589202399, 0.9013552543879138, 0.9102421684070207, 0.9246834036880693, 0.927571650744279, 0.9160186625194401, 0.9046878471450789, 0.8989113530326595, 0.8922461675183293, 0.8880248833592534, 0.8829149077982671, 0.878915796489669, 0.8760275494334593, 0.8693623639191291, 0.8575872028438125, 0.14130193290379917, 0.1684070206620751, 0.14618973561430793, 0.7824927793823595, 0.8662519440124417, 0.9380137747167296, 0.9449011330815374, 0.9206842923794712, 0.8338147078427016, 0.7682737169517885, 0.1526327482781604, 0.14374583425905355, 0.13530326594090203, 0.13019329037991556, 0.12952677182848257, 0.13263719173516997, 0.13441457453899133, 0.1368584758942457, 0.13730282159520107, 0.1417462786047545, 0.13197067318373695, 0.9157964896689624, 0.9273494778938014, 0.9480115529882248, 0.9464563430348811, 0.9213508109309042, 0.8993556987336148, 0.13574761164185736, 0.14618973561430793, 0.14219062430570983, 0.14352366140857586, 0.14352366140857586, 0.14530104421239726, 0.1464119084647856, 0.15552099533437014, 0.1566318595867585, 0.15863141524105753, 0.1588535880915352, 0.16263052654965562, 0.16929571206398578, 0.18129304598978005, 0.19817818262608308, 0.2257276160853144, 0.24483448122639415, 0.2654965563208176, 0.8591424127971562, 0.9169073539213508, 0.9342368362586092, 0.9031326371917352, 0.8033770273272606, 0.5267718284825594, 0.5503221506331927, 0.5469895578760275, 0.554099089091313, 0.5665407687180627, 0.578538102643857, 0.9304598978004888, 0.9051321928460342, 0.6043101532992669, 0.6236391912908242, 0.6363030437680516, 0.6518551433014885, 0.6665185514330149, 0.6882914907798267, 0.7007331704065763, 0.7162852699400133, 0.7927127305043323, 0.8151521884025772, 0.8649189069095756, 0.8462563874694512, 0.8655854254610087, 0.8675849811153077, 0.8742501666296378, 0.8786936236391913, 0.8815818706954011, 0.8826927349477893, 0.9022439457898245, 0.9031326371917352, 0.9035769828926905, 0.9051321928460342, 0.9082426127527217, 0.9111308598089314, 0.913352588313708, 0.9173516996223061, 0.9226838480337702, 0.9266829593423683, 0.9353477005109976, 0.9451233059320151], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Methyltransf_6.gap.json b/pfam_gap_rates/Methyltransf_6.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..402b686e37ab1119114261c2185c27ac43959241
--- /dev/null
+++ b/pfam_gap_rates/Methyltransf_6.gap.json
@@ -0,0 +1 @@
+{"family": "Methyltransf_6", "n_seqs": 1584, "length": 197, "gap_rates": [0.6268939393939394, 0.3787878787878788, 0.30997474747474746, 0.24936868686868688, 0.22853535353535354, 0.2178030303030303, 0.20833333333333334, 0.7651515151515151, 0.7727272727272727, 0.7891414141414141, 0.7941919191919192, 0.80239898989899, 0.9463383838383839, 0.8194444444444444, 0.7967171717171717, 0.7929292929292929, 0.7784090909090909, 0.7664141414141414, 0.759469696969697, 0.1919191919191919, 0.21654040404040403, 0.2518939393939394, 0.23737373737373738, 0.22727272727272727, 0.20643939393939395, 0.17613636363636365, 0.17045454545454544, 0.13573232323232323, 0.6174242424242424, 0.7960858585858586, 0.9406565656565656, 0.9494949494949495, 0.9255050505050505, 0.6786616161616161, 0.5890151515151515, 0.29419191919191917, 0.27904040404040403, 0.26704545454545453, 0.26262626262626265, 0.88510101010101, 0.2588383838383838, 0.2720959595959596, 0.2758838383838384, 0.6047979797979798, 0.21085858585858586, 0.5227272727272727, 0.8383838383838383, 0.9147727272727273, 0.9381313131313131, 0.8768939393939394, 0.7607323232323232, 0.2563131313131313, 0.029671717171717172, 0.028409090909090908, 0.028409090909090908, 0.027777777777777776, 0.027777777777777776, 0.027777777777777776, 0.027777777777777776, 0.027777777777777776, 0.027777777777777776, 0.027146464646464648, 0.027777777777777776, 0.027146464646464648, 0.30303030303030304, 0.6628787878787878, 0.6875, 0.7449494949494949, 0.7777777777777778, 0.7941919191919192, 0.8630050505050505, 0.9425505050505051, 0.9494949494949495, 0.9457070707070707, 0.9191919191919192, 0.8194444444444444, 0.7840909090909091, 0.7632575757575758, 0.7253787878787878, 0.6748737373737373, 0.6578282828282829, 0.029671717171717172, 0.07765151515151515, 0.9311868686868687, 0.9242424242424242, 0.05618686868686869, 0.049873737373737376, 0.03282828282828283, 0.020833333333333332, 0.019570707070707072, 0.018308080808080808, 0.018308080808080808, 0.017676767676767676, 0.017676767676767676, 0.018308080808080808, 0.017676767676767676, 0.016414141414141416, 0.015782828282828284, 0.015782828282828284, 0.015151515151515152, 0.015151515151515152, 0.01452020202020202, 0.01452020202020202, 0.01452020202020202, 0.025883838383838384, 0.023989898989898988, 0.013888888888888888, 0.9393939393939394, 0.6698232323232324, 0.020833333333333332, 0.19381313131313133, 0.01452020202020202, 0.012626262626262626, 0.012626262626262626, 0.013257575757575758, 0.21717171717171718, 0.011994949494949494, 0.012626262626262626, 0.012626262626262626, 0.011994949494949494, 0.011994949494949494, 0.011994949494949494, 0.011363636363636364, 0.010732323232323232, 0.011994949494949494, 0.011994949494949494, 0.011363636363636364, 0.010732323232323232, 0.011363636363636364, 0.010732323232323232, 0.010101010101010102, 0.010101010101010102, 0.010101010101010102, 0.010101010101010102, 0.010732323232323232, 0.010732323232323232, 0.011994949494949494, 0.010101010101010102, 0.010732323232323232, 0.011363636363636364, 0.011363636363636364, 0.010732323232323232, 0.010732323232323232, 0.010732323232323232, 0.011363636363636364, 0.011994949494949494, 0.03156565656565657, 0.011994949494949494, 0.011363636363636364, 0.011363636363636364, 0.012626262626262626, 0.013257575757575758, 0.01452020202020202, 0.015151515151515152, 0.015151515151515152, 0.015782828282828284, 0.015151515151515152, 0.016414141414141416, 0.015782828282828284, 0.020833333333333332, 0.16224747474747475, 0.02335858585858586, 0.021464646464646464, 0.02904040404040404, 0.5372474747474747, 0.054924242424242424, 0.03345959595959596, 0.017676767676767676, 0.9412878787878788, 0.017676767676767676, 0.017045454545454544, 0.017045454545454544, 0.017045454545454544, 0.017676767676767676, 0.017676767676767676, 0.017045454545454544, 0.017676767676767676, 0.017676767676767676, 0.01893939393939394, 0.021464646464646464, 0.018308080808080808, 0.018308080808080808, 0.018308080808080808, 0.018308080808080808, 0.018308080808080808, 0.018308080808080808, 0.018308080808080808, 0.018308080808080808, 0.018308080808080808, 0.01893939393939394, 0.022095959595959596, 0.022095959595959596, 0.023989898989898988, 0.027777777777777776, 0.02904040404040404, 0.05808080808080808, 0.3648989898989899], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/MgtC.gap.json b/pfam_gap_rates/MgtC.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..27cd1a4fc260a9c8bc4f521bd317d6b4baaba5f1
--- /dev/null
+++ b/pfam_gap_rates/MgtC.gap.json
@@ -0,0 +1 @@
+{"family": "MgtC", "n_seqs": 1441, "length": 150, "gap_rates": [0.21721027064538515, 0.07494795281054822, 0.03539208882720333, 0.027064538514920196, 0.02498265093684941, 0.02498265093684941, 0.02498265093684941, 0.02498265093684941, 0.02498265093684941, 0.02498265093684941, 0.02498265093684941, 0.02359472588480222, 0.022900763358778626, 0.022900763358778626, 0.022900763358778626, 0.022900763358778626, 0.02359472588480222, 0.02359472588480222, 0.030534351145038167, 0.021512838306731435, 0.8854961832061069, 0.8959056210964608, 0.9188063844552394, 0.9424011103400416, 0.9042331714087439, 0.8882720333102012, 0.8771686328938237, 0.021512838306731435, 0.01943095072866065, 0.018043025676613464, 0.018043025676613464, 0.01734906315058987, 0.016655100624566273, 0.016655100624566273, 0.0131852879944483, 0.0131852879944483, 0.0131852879944483, 0.0131852879944483, 0.01179736294240111, 0.01179736294240111, 0.01179736294240111, 0.0131852879944483, 0.0131852879944483, 0.0131852879944483, 0.012491325468424705, 0.0131852879944483, 0.0131852879944483, 0.05135322692574601, 0.04718945176960444, 0.048577376821651634, 0.05968077723802915, 0.12699514226231784, 0.10478834142956281, 0.1707147814018043, 0.2220680083275503, 0.3462873004857738, 0.4351145038167939, 0.5260235947258848, 0.6384455239417072, 0.8514920194309508, 0.9347675225537821, 0.945176960444136, 0.9479528105482304, 0.9410131852879945, 0.9035392088827203, 0.7869535045107564, 0.6030534351145038, 0.49410131852879946, 0.38653712699514226, 0.2817487855655795, 0.1825121443442054, 0.16169326856349758, 0.08327550312283137, 0.07564191533657183, 0.05968077723802915, 0.04441360166551006, 0.024288688410825817, 0.018736988202637056, 0.01179736294240111, 0.011103400416377515, 0.01179736294240111, 0.01179736294240111, 0.010409437890353921, 0.011103400416377515, 0.011103400416377515, 0.012491325468424705, 0.012491325468424705, 0.9465648854961832, 0.011103400416377515, 0.01179736294240111, 0.011103400416377515, 0.011103400416377515, 0.011103400416377515, 0.6183206106870229, 0.5739070090215128, 0.029840388619014575, 0.06453851492019431, 0.14642609299097847, 0.06453851492019431, 0.9208882720333103, 0.9430950728660652, 0.9042331714087439, 0.009715475364330326, 0.009715475364330326, 0.009715475364330326, 0.009715475364330326, 0.009715475364330326, 0.010409437890353921, 0.010409437890353921, 0.010409437890353921, 0.011103400416377515, 0.01179736294240111, 0.0131852879944483, 0.013879250520471894, 0.012491325468424705, 0.012491325468424705, 0.012491325468424705, 0.012491325468424705, 0.012491325468424705, 0.012491325468424705, 0.012491325468424705, 0.012491325468424705, 0.013879250520471894, 0.013879250520471894, 0.027758501040943788, 0.018736988202637056, 0.018736988202637056, 0.015267175572519083, 0.016655100624566273, 0.01734906315058987, 0.01734906315058987, 0.01734906315058987, 0.01734906315058987, 0.01734906315058987, 0.01734906315058987, 0.01734906315058987, 0.01734906315058987, 0.01734906315058987, 0.018043025676613464, 0.018736988202637056, 0.018043025676613464, 0.018043025676613464, 0.022900763358778626, 0.03608605135322693, 0.062456627342123525, 0.10340041637751561, 0.1589174184594032, 0.2081887578070784, 0.33102012491325467, 0.5746009715475364], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Miga.gap.json b/pfam_gap_rates/Miga.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b5c7a4c926e2a18fff97a6d33f1c6fc3515450cc
--- /dev/null
+++ b/pfam_gap_rates/Miga.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Misat_Tub_SegII.gap.json b/pfam_gap_rates/Misat_Tub_SegII.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..5a146844003a99966d6836c2a5c4c8c24fc7c5d6
--- /dev/null
+++ b/pfam_gap_rates/Misat_Tub_SegII.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/MlaD.gap.json b/pfam_gap_rates/MlaD.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..bacabcea914098ee48e8c2bbd0e44f82c2f18580
--- /dev/null
+++ b/pfam_gap_rates/MlaD.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Mlf1IP.gap.json b/pfam_gap_rates/Mlf1IP.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..4b0677953645385dab2e5c75bfd7b7f2cc2624ed
--- /dev/null
+++ b/pfam_gap_rates/Mlf1IP.gap.json
@@ -0,0 +1 @@
+{"family": "Mlf1IP", "n_seqs": 199, "length": 239, "gap_rates": [0.7889447236180904, 0.7487437185929648, 0.6834170854271356, 0.6381909547738693, 0.6231155778894473, 0.6231155778894473, 0.6130653266331658, 0.5829145728643216, 0.5577889447236181, 0.8693467336683417, 0.5376884422110553, 0.5376884422110553, 0.4824120603015075, 0.7989949748743719, 0.8040201005025126, 0.8140703517587939, 0.8190954773869347, 0.8391959798994975, 0.8542713567839196, 0.8693467336683417, 0.8743718592964824, 0.8844221105527639, 0.8894472361809045, 0.8944723618090452, 0.914572864321608, 0.9246231155778895, 0.9296482412060302, 0.949748743718593, 0.9396984924623115, 0.9246231155778895, 0.914572864321608, 0.8944723618090452, 0.8894472361809045, 0.8844221105527639, 0.8844221105527639, 0.8693467336683417, 0.864321608040201, 0.8442211055276382, 0.8341708542713567, 0.8190954773869347, 0.8090452261306532, 0.7989949748743719, 0.7889447236180904, 0.5125628140703518, 0.5728643216080402, 0.5577889447236181, 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\ No newline at end of file
diff --git a/pfam_gap_rates/MobA_MobL.gap.json b/pfam_gap_rates/MobA_MobL.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c8731b2e91089a054bbd8c7b504f7356da1c006b
--- /dev/null
+++ b/pfam_gap_rates/MobA_MobL.gap.json
@@ -0,0 +1 @@
+{"family": "MobA_MobL", "n_seqs": 469, "length": 262, "gap_rates": [0.4904051172707889, 0.35607675906183367, 0.3304904051172708, 0.3283582089552239, 0.3049040511727079, 0.2942430703624733, 0.2921108742004264, 0.2921108742004264, 0.2921108742004264, 0.2921108742004264, 0.2899786780383795, 0.2899786780383795, 0.2899786780383795, 0.2899786780383795, 0.2771855010660981, 0.27292110874200426, 0.26865671641791045, 0.26439232409381663, 0.26439232409381663, 0.2601279317697228, 0.2579957356076759, 0.2537313432835821, 0.23667377398720682, 0.2302771855010661, 0.2302771855010661, 0.2302771855010661, 0.2302771855010661, 0.2260127931769723, 0.22174840085287847, 0.22388059701492538, 0.2878464818763326, 0.24520255863539445, 0.22388059701492538, 0.21961620469083157, 0.21535181236673773, 0.21535181236673773, 0.21748400852878466, 0.21535181236673773, 0.21748400852878466, 0.21321961620469082, 0.2046908315565032, 0.2025586353944563, 0.208955223880597, 0.22174840085287847, 0.22174840085287847, 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\ No newline at end of file
diff --git a/pfam_gap_rates/Mpp10.gap.json b/pfam_gap_rates/Mpp10.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b703a7159400f909bab9972de757879a5862f077
--- /dev/null
+++ b/pfam_gap_rates/Mpp10.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/MreB_Mbl.gap.json b/pfam_gap_rates/MreB_Mbl.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..df9622c0719352a0a37f0434ebcce141791914c8
--- /dev/null
+++ b/pfam_gap_rates/MreB_Mbl.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/MtN3_slv.gap.json b/pfam_gap_rates/MtN3_slv.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d95a0a2fb192b960bd2c24ef6ca789a728171924
--- /dev/null
+++ b/pfam_gap_rates/MtN3_slv.gap.json
@@ -0,0 +1 @@
+{"family": "MtN3_slv", "n_seqs": 2111, "length": 90, "gap_rates": [0.37707247749881573, 0.261013737565135, 0.18048318332543817, 0.1567977261961156, 0.14069161534817623, 0.12837517764092846, 0.11795357650402653, 0.10990052108005685, 0.10800568450971104, 0.10563713879677877, 0.10279488394126006, 0.09711037423022265, 0.09332070108953103, 0.08905731880625296, 0.09379441023211749, 0.10090004737091426, 0.1103742302226433, 0.09568924680246328, 0.0738986262434865, 0.05779251539554713, 0.053055423969682616, 0.048792041686404546, 0.037423022264329704, 0.033633349123638086, 0.030317385125532923, 0.03221222169587873, 0.03268593083846518, 0.03173851255329228, 0.031264803410705824, 0.030791094268119375, 0.028896257697773566, 0.027475130270014213, 0.024159166271909047, 0.020843202273803884, 0.02036949313121743, 0.022738038844149693, 0.02226432970156324, 0.02036949313121743, 0.019422074846044527, 0.015158692562766462, 0.016579819990525817, 0.016106110847939364, 0.01468498342018001, 0.013737565135007106, 0.013737565135007106, 0.008526764566556135, 0.007579346281383231, 0.007579346281383231, 0.0071056371387967785, 0.007579346281383231, 0.007579346281383231, 0.008053055423969682, 0.009000473709142587, 0.9469445760303173, 0.00994789199431549, 0.010895310279488394, 0.011842728564661297, 0.011369019422074847, 0.013737565135007106, 0.8853623874940786, 0.9223117006158219, 0.7181430601610611, 0.01468498342018001, 0.01468498342018001, 0.018948365703458078, 0.023685457129322594, 0.026054002842254856, 0.02936996684036002, 0.02984367598294647, 0.030317385125532923, 0.03315963998105163, 0.03600189483657035, 0.0364756039791568, 0.03837044054950261, 0.04168640454760777, 0.04263382283278067, 0.04594978683088584, 0.06821411653244908, 0.07863571766935101, 0.09616295594504974, 0.1122690667929891, 0.12790146849834202, 0.13548081477972526, 0.147797252486973, 0.1605873993368072, 0.19043107531975367, 0.2288015158692563, 0.3330175272382757, 0.5234486025580294, 0.9469445760303173], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Mu-like_Pro.gap.json b/pfam_gap_rates/Mu-like_Pro.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..6fe8c2ec359d17e79f84f5970379261d1f211a34
--- /dev/null
+++ b/pfam_gap_rates/Mu-like_Pro.gap.json
@@ -0,0 +1 @@
+{"family": "Mu-like_Pro", "n_seqs": 114, "length": 411, "gap_rates": [0.5, 0.38596491228070173, 0.3684210526315789, 0.3684210526315789, 0.3684210526315789, 0.3684210526315789, 0.35964912280701755, 0.9035087719298246, 0.3684210526315789, 0.34210526315789475, 0.3508771929824561, 0.3333333333333333, 0.3333333333333333, 0.3333333333333333, 0.32456140350877194, 0.32456140350877194, 0.40350877192982454, 0.5964912280701754, 0.7280701754385965, 0.7192982456140351, 0.7105263157894737, 0.9210526315789473, 0.9385964912280702, 0.7631578947368421, 0.2982456140350877, 0.2894736842105263, 0.2982456140350877, 0.2982456140350877, 0.2982456140350877, 0.5, 0.49122807017543857, 0.2982456140350877, 0.2719298245614035, 0.2719298245614035, 0.2631578947368421, 0.2631578947368421, 0.2631578947368421, 0.2631578947368421, 0.9385964912280702, 0.2807017543859649, 0.2543859649122807, 0.2543859649122807, 0.2543859649122807, 0.2631578947368421, 0.2631578947368421, 0.2543859649122807, 0.24561403508771928, 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\ No newline at end of file
diff --git a/pfam_gap_rates/Mu-transpos_C.gap.json b/pfam_gap_rates/Mu-transpos_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..163c027c0ca1f314a6e2112663ff315e92722979
--- /dev/null
+++ b/pfam_gap_rates/Mu-transpos_C.gap.json
@@ -0,0 +1 @@
+{"family": "Mu-transpos_C", "n_seqs": 580, "length": 81, "gap_rates": [0.7913793103448276, 0.5362068965517242, 0.3103448275862069, 0.17586206896551723, 0.16034482758620688, 0.13793103448275862, 0.09310344827586207, 0.05344827586206897, 0.032758620689655175, 0.02586206896551724, 0.02413793103448276, 0.017241379310344827, 0.013793103448275862, 0.005172413793103448, 0.005172413793103448, 0.946551724137931, 0.0034482758620689655, 0.6517241379310345, 0.0017241379310344827, 0.0017241379310344827, 0.0, 0.9431034482758621, 0.9379310344827586, 0.0, 0.0017241379310344827, 0.0, 0.0, 0.0, 0.0017241379310344827, 0.0017241379310344827, 0.9482758620689655, 0.0034482758620689655, 0.0017241379310344827, 0.23620689655172414, 0.23448275862068965, 0.8551724137931035, 0.8137931034482758, 0.05172413793103448, 0.07413793103448275, 0.03103448275862069, 0.005172413793103448, 0.0, 0.6655172413793103, 0.7275862068965517, 0.8224137931034483, 0.8931034482758621, 0.9431034482758621, 0.906896551724138, 0.8327586206896552, 0.7586206896551724, 0.6879310344827586, 0.6586206896551724, 0.0, 0.0, 0.0, 0.0, 0.0034482758620689655, 0.008620689655172414, 0.008620689655172414, 0.010344827586206896, 0.017241379310344827, 0.017241379310344827, 0.029310344827586206, 0.8931034482758621, 0.027586206896551724, 0.032758620689655175, 0.022413793103448276, 0.029310344827586206, 0.032758620689655175, 0.05172413793103448, 0.09310344827586207, 0.9189655172413793, 0.3431034482758621, 0.2, 0.2396551724137931, 0.35517241379310344, 0.9, 0.4706896551724138, 0.5431034482758621, 0.7241379310344828, 0.843103448275862], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Mur_ligase_C.gap.json b/pfam_gap_rates/Mur_ligase_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..5fd5b73611b6b608ff9d7c4898180caa435d441f
--- /dev/null
+++ b/pfam_gap_rates/Mur_ligase_C.gap.json
@@ -0,0 +1 @@
+{"family": "Mur_ligase_C", "n_seqs": 5000, "length": 96, "gap_rates": [0.5102, 0.1924, 0.082, 0.046, 0.0424, 0.0408, 0.0386, 0.0348, 0.0322, 0.0304, 0.9392, 0.8996, 0.2406, 0.1216, 0.0254, 0.0108, 0.003, 0.0026, 0.0012, 0.0014, 0.0014, 0.623, 0.001, 0.001, 0.001, 0.001, 0.001, 0.001, 0.001, 0.001, 0.001, 0.001, 0.001, 0.001, 0.001, 0.001, 0.001, 0.1588, 0.1568, 0.1646, 0.4022, 0.1954, 0.9138, 0.8682, 0.1458, 0.0098, 0.0048, 0.0042, 0.0028, 0.0032, 0.0032, 0.0034, 0.004, 0.1746, 0.2882, 0.2786, 0.037, 0.54, 0.5292, 0.5184, 0.0504, 0.0456, 0.0434, 0.048, 0.1408, 0.1198, 0.0616, 0.0572, 0.0598, 0.062, 0.0674, 0.0704, 0.0726, 0.077, 0.1364, 0.3554, 0.1106, 0.1164, 0.1176, 0.8544, 0.1258, 0.1296, 0.1446, 0.2188, 0.2322, 0.2772, 0.3534, 0.4014, 0.4526, 0.4822, 0.508, 0.5308, 0.5864, 0.6454, 0.7104, 0.8144], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/MutS_II.gap.json b/pfam_gap_rates/MutS_II.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..1e5ed2fb0a3183ca014276aab160490b7f504d8d
--- /dev/null
+++ b/pfam_gap_rates/MutS_II.gap.json
@@ -0,0 +1 @@
+{"family": "MutS_II", "n_seqs": 2561, "length": 172, "gap_rates": [0.46427176884029675, 0.2737212026552128, 0.18898867629832097, 0.164388910581804, 0.15579851620460758, 0.949238578680203, 0.9281530652089027, 0.14798906677079265, 0.15072237407262787, 0.14877001171417414, 0.6356891839125342, 0.7961733697774307, 0.8914486528699727, 0.934010152284264, 0.9144865286997267, 0.860210855134713, 0.6938695821944553, 0.5661850839515814, 0.0792659117532214, 0.046075751659508, 0.03084732526356892, 0.01952362358453729, 0.7571261226083561, 0.008590394377196407, 0.00741897696212417, 0.005857087075361187, 0.005076142131979695, 0.004295197188598204, 0.0031237797735259665, 0.003514252245216712, 0.003904724716907458, 0.002733307301835221, 0.0023428348301444747, 0.001952362358453729, 0.001952362358453729, 0.001952362358453729, 0.001952362358453729, 0.0011714174150722373, 0.0011714174150722373, 0.005466614603670442, 0.0015618898867629833, 0.023037875829754, 0.19484576337368215, 0.5493947676688793, 0.5642327215931277, 0.4970714564623194, 0.04099960952752831, 0.0011714174150722373, 0.0007809449433814916, 0.0007809449433814916, 0.0007809449433814916, 0.0007809449433814916, 0.0007809449433814916, 0.0007809449433814916, 0.0011714174150722373, 0.0011714174150722373, 0.0011714174150722373, 0.001952362358453729, 0.001952362358453729, 0.001952362358453729, 0.001952362358453729, 0.0023428348301444747, 0.0031237797735259665, 0.0031237797735259665, 0.002733307301835221, 0.002733307301835221, 0.004685669660288949, 0.00741897696212417, 0.06208512299882858, 0.09176103084732526, 0.12846544318625536, 0.38383443967200315, 0.4490433424443577, 0.8098399062866068, 0.8629441624365483, 0.904724716907458, 0.9496290511518938, 0.9289340101522843, 0.8844201483795392, 0.8360015618898867, 0.7809449433814916, 0.6220226474033581, 0.5263568918391254, 0.41897696212417024, 0.3561108941819602, 0.2881686841077704, 0.2206169465052714, 0.1807887543928153, 0.12417024599765716, 0.10777040218664584, 0.0987895353377587, 0.09488481062085123, 0.09566575556423272, 0.09449433814916049, 0.08980866848887153, 0.08980866848887153, 0.09254197579070675, 0.093713393205779, 0.9426005466614603, 0.09839906286606795, 0.09957048028114018, 0.10191331511128465, 0.1023037875829754, 0.10386567746973838, 0.10425614994142914, 0.10347520499804763, 0.10464662241311988, 0.10816087465833658, 0.11011323701679032, 0.11089418196017181, 0.13080827801639985, 0.12846544318625536, 0.12456071846934791, 0.12846544318625536, 0.9488481062085123, 0.13002733307301836, 0.1253416634127294, 0.12260835611089418, 0.9183912534166341, 0.9457243264349864, 0.9328387348691918, 0.8953533775868802, 0.11831315892229598, 0.13158922295978134, 0.1319796954314721, 0.13080827801639985, 0.1706364701288559, 0.15462709878953534, 0.15306520890277237, 0.19250292854353768, 0.2752830925419758, 0.276454509957048, 0.8051542366263178, 0.8414681764935572, 0.9027723545490043, 0.935572042171027, 0.9453338539632956, 0.9164388910581804, 0.8902772354549005, 0.827801639984381, 0.7629832096837172, 0.7063647012885591, 0.27996876220226474, 0.21280749707145646, 0.19328387348691917, 0.17336977743069112, 0.16087465833658726, 0.15267473643108162, 0.14720812182741116, 0.14877001171417414, 0.17180788754392814, 0.1448652869972667, 0.14213197969543148, 0.13237016790316283, 0.13080827801639985, 0.13002733307301836, 0.13002733307301836, 0.1311987504880906, 0.13276064037485358, 0.13744631003514252, 0.15150331901600936, 0.17571261226083562, 0.19484576337368215, 0.2139789144865287, 0.24014057008980866, 0.8215540804373291, 0.35884420148379537, 0.40374853572823116, 0.45919562670831704, 0.4994142912924639, 0.5458805154236627, 0.860210855134713], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Myosin_N.gap.json b/pfam_gap_rates/Myosin_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..cb3daa8007bfff0cbee5297a7c1743b0da1cc197
--- /dev/null
+++ b/pfam_gap_rates/Myosin_N.gap.json
@@ -0,0 +1 @@
+{"family": "Myosin_N", "n_seqs": 936, "length": 42, "gap_rates": [0.20726495726495728, 0.0876068376068376, 0.041666666666666664, 0.022435897435897436, 0.018162393162393164, 0.017094017094017096, 0.016025641025641024, 0.016025641025641024, 0.01282051282051282, 0.011752136752136752, 0.008547008547008548, 0.004273504273504274, 0.002136752136752137, 0.002136752136752137, 0.0, 0.0, 0.0, 0.0, 0.0, 0.9123931623931624, 0.0010683760683760685, 0.0010683760683760685, 0.0010683760683760685, 0.003205128205128205, 0.00641025641025641, 0.007478632478632479, 0.009615384615384616, 0.014957264957264958, 0.017094017094017096, 0.0202991452991453, 0.024572649572649572, 0.7777777777777778, 0.05555555555555555, 0.03739316239316239, 0.04487179487179487, 0.05555555555555555, 0.08547008547008547, 0.12713675213675213, 0.1752136752136752, 0.2467948717948718, 0.35363247863247865, 0.6292735042735043], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/NAAA-beta.gap.json b/pfam_gap_rates/NAAA-beta.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..4e1e3e20d7c20b841f3725ceee74c739d08fd415
--- /dev/null
+++ b/pfam_gap_rates/NAAA-beta.gap.json
@@ -0,0 +1 @@
+{"family": "NAAA-beta", "n_seqs": 139, "length": 64, "gap_rates": [0.8776978417266187, 0.2805755395683453, 0.08633093525179857, 0.04316546762589928, 0.014388489208633094, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.007194244604316547, 0.007194244604316547, 0.11510791366906475, 0.1223021582733813, 0.22302158273381295, 0.22302158273381295, 0.014388489208633094, 0.014388489208633094, 0.014388489208633094, 0.014388489208633094, 0.014388489208633094, 0.02158273381294964, 0.02158273381294964, 0.05755395683453238, 0.050359712230215826, 0.09352517985611511, 0.2014388489208633, 0.15827338129496402, 0.16546762589928057, 0.17985611510791366, 0.7410071942446043, 0.17266187050359713, 0.09352517985611511, 0.07913669064748201, 0.07913669064748201, 0.07913669064748201, 0.08633093525179857, 0.08633093525179857, 0.08633093525179857, 0.10071942446043165, 0.1079136690647482, 0.1510791366906475, 0.15827338129496402, 0.18705035971223022, 0.22302158273381295, 0.26618705035971224, 0.3381294964028777, 0.45323741007194246, 0.7985611510791367], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/NAC.gap.json b/pfam_gap_rates/NAC.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..9d8c98089854c086d1f845b8127e55b0ef7c8949
--- /dev/null
+++ b/pfam_gap_rates/NAC.gap.json
@@ -0,0 +1 @@
+{"family": "NAC", "n_seqs": 955, "length": 61, "gap_rates": [0.11727748691099477, 0.07539267015706806, 0.05759162303664921, 0.05340314136125655, 0.049214659685863874, 0.04502617801047121, 0.039790575916230364, 0.024083769633507852, 0.023036649214659685, 0.023036649214659685, 0.023036649214659685, 0.023036649214659685, 0.01780104712041885, 0.9235602094240838, 0.9225130890052357, 0.01780104712041885, 0.01780104712041885, 0.016753926701570682, 0.04397905759162304, 0.013612565445026177, 0.013612565445026177, 0.014659685863874346, 0.011518324607329843, 0.011518324607329843, 0.011518324607329843, 0.009424083769633508, 0.009424083769633508, 0.009424083769633508, 0.009424083769633508, 0.010471204188481676, 0.16963350785340314, 0.010471204188481676, 0.010471204188481676, 0.011518324607329843, 0.010471204188481676, 0.010471204188481676, 0.011518324607329843, 0.012565445026178011, 0.011518324607329843, 0.011518324607329843, 0.018848167539267015, 0.018848167539267015, 0.9256544502617801, 0.9235602094240838, 0.020942408376963352, 0.020942408376963352, 0.02198952879581152, 0.025130890052356022, 0.0387434554973822, 0.02617801047120419, 0.031413612565445025, 0.02198952879581152, 0.02198952879581152, 0.024083769633507852, 0.027225130890052355, 0.030366492146596858, 0.03769633507853403, 0.048167539267015703, 0.07225130890052356, 0.13507853403141362, 0.6544502617801047], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/NAD_Gly3P_dh_C.gap.json b/pfam_gap_rates/NAD_Gly3P_dh_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..315f2955cfea31b08f7cd353ce09e1f5f6e54d50
--- /dev/null
+++ b/pfam_gap_rates/NAD_Gly3P_dh_C.gap.json
@@ -0,0 +1 @@
+{"family": "NAD_Gly3P_dh_C", "n_seqs": 2536, "length": 151, "gap_rates": [0.05638801261829653, 0.04850157728706624, 0.04258675078864353, 0.03785488958990536, 0.028391167192429023, 0.027996845425867507, 0.026813880126182965, 0.026025236593059938, 0.026025236593059938, 0.026025236593059938, 0.024842271293375396, 0.024842271293375396, 0.022082018927444796, 0.02168769716088328, 0.021293375394321766, 0.021293375394321766, 0.021293375394321766, 0.021293375394321766, 0.021293375394321766, 0.021293375394321766, 0.02089905362776025, 0.02050473186119874, 0.020110410094637224, 0.02050473186119874, 0.01971608832807571, 0.020110410094637224, 0.022870662460567823, 0.027996845425867507, 0.02089905362776025, 0.020110410094637224, 0.020110410094637224, 0.020110410094637224, 0.01892744479495268, 0.01892744479495268, 0.01892744479495268, 0.01892744479495268, 0.019321766561514197, 0.019321766561514197, 0.019321766561514197, 0.02050473186119874, 0.021293375394321766, 0.021293375394321766, 0.02050473186119874, 0.02089905362776025, 0.02050473186119874, 0.020110410094637224, 0.02050473186119874, 0.02050473186119874, 0.02050473186119874, 0.02050473186119874, 0.03548895899053628, 0.022870662460567823, 0.020110410094637224, 0.8497634069400631, 0.9250788643533123, 0.8462145110410094, 0.022476340694006308, 0.021293375394321766, 0.020110410094637224, 0.02050473186119874, 0.028391167192429023, 0.9471608832807571, 0.029574132492113565, 0.04022082018927445, 0.021293375394321766, 0.021293375394321766, 0.022082018927444796, 0.02168769716088328, 0.022082018927444796, 0.02168769716088328, 0.02089905362776025, 0.021293375394321766, 0.02326498422712934, 0.022476340694006308, 0.022082018927444796, 0.022870662460567823, 0.022476340694006308, 0.23659305993690852, 0.2334384858044164, 0.021293375394321766, 0.02168769716088328, 0.021293375394321766, 0.02089905362776025, 0.02089905362776025, 0.02089905362776025, 0.02089905362776025, 0.02089905362776025, 0.021293375394321766, 0.021293375394321766, 0.021293375394321766, 0.9499211356466877, 0.8288643533123028, 0.022476340694006308, 0.04692429022082019, 0.03470031545741325, 0.030757097791798107, 0.02996845425867508, 0.029574132492113565, 0.061908517350157725, 0.06545741324921135, 0.07531545741324921, 0.8099369085173501, 0.08832807570977919, 0.08438485804416404, 0.06072555205047318, 0.7547318611987381, 0.061514195583596214, 0.025630914826498423, 0.024842271293375396, 0.02365930599369085, 0.024053627760252366, 0.024053627760252366, 0.02444794952681388, 0.025236593059936908, 0.025236593059936908, 0.025236593059936908, 0.025236593059936908, 0.025236593059936908, 0.025236593059936908, 0.025630914826498423, 0.027602523659305992, 0.02720820189274448, 0.02720820189274448, 0.02917981072555205, 0.029574132492113565, 0.032728706624605676, 0.02996845425867508, 0.8012618296529969, 0.7906151419558359, 0.03430599369085174, 0.03430599369085174, 0.03470031545741325, 0.03509463722397476, 0.03548895899053628, 0.03548895899053628, 0.03548895899053628, 0.03627760252365931, 0.03627760252365931, 0.03667192429022082, 0.03706624605678233, 0.03746056782334385, 0.038249211356466875, 0.039826498422712936, 0.04574132492113565, 0.05638801261829653, 0.0666403785488959, 0.0776813880126183, 0.1029179810725552, 0.15812302839116718, 0.2306782334384858, 0.4550473186119874], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/NAD_Gly3P_dh_N.gap.json b/pfam_gap_rates/NAD_Gly3P_dh_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..9b558bab73e76eb08fbe0c0938257dedf777f074
--- /dev/null
+++ b/pfam_gap_rates/NAD_Gly3P_dh_N.gap.json
@@ -0,0 +1 @@
+{"family": "NAD_Gly3P_dh_N", "n_seqs": 2649, "length": 179, "gap_rates": [0.5413363533408834, 0.20951302378255945, 0.13250283125707815, 0.1162702906757267, 0.11211778029445074, 0.11174027935069837, 0.11098527746319366, 0.10985277463193659, 0.11023027557568894, 0.1087202718006795, 0.0985277463193658, 0.0985277463193658, 0.09815024537561344, 0.09701774254435636, 0.09626274065685164, 0.09626274065685164, 0.09550773876934693, 0.09588523971309929, 0.0947527368818422, 0.0947527368818422, 0.09739524348810873, 0.10079275198187995, 0.816157040392601, 0.8418271045677614, 0.8440921102302755, 0.9188372970932427, 0.8542846357115893, 0.8437146092865232, 0.8395620989052472, 0.79841449603624, 0.14080785201963006, 0.0909777274443186, 0.09060022650056625, 0.09022272555681389, 0.08493771234428087, 0.08493771234428087, 0.08531521328803322, 0.08607021517553794, 0.08607021517553794, 0.0909777274443186, 0.8240845602114005, 0.844469611174028, 0.9437523593808984, 0.8448471121177803, 0.8414496036240091, 0.8123820309550774, 0.09739524348810873, 0.09966024915062288, 0.1023027557568894, 0.10305775764439411, 0.10305775764439411, 0.10305775764439411, 0.10305775764439411, 0.10343525858814646, 0.10947527368818422, 0.10268025670064175, 0.10381275953189883, 0.1106077765194413, 0.10456776141940355, 0.10834277085692715, 0.15553038882597206, 0.11551528878822197, 0.11023027557568894, 0.11702529256323141, 0.10985277463193659, 0.10192525481313704, 0.09513023782559456, 0.096640241600604, 0.09550773876934693, 0.09399773499433749, 0.07059267648169121, 0.06946017365043412, 0.06719516798791997, 0.0622876557191393, 0.05549263873159683, 0.04718761796904492, 0.04228010570026425, 0.0502076255190638, 0.06002265005662514, 0.05473763684409211, 0.051340128350320875, 0.046810117025292565, 0.07965269913174783, 0.03473008682521706, 0.03284258210645526, 0.03284258210645526, 0.03208758021895055, 0.031710079275198186, 0.03095507738769347, 0.03095507738769347, 0.03133257833144583, 0.03133257833144583, 0.03133257833144583, 0.03095507738769347, 0.03133257833144583, 0.03208758021895055, 0.032465081162702907, 0.03397508493771234, 0.03473008682521706, 0.04228010570026425, 0.0362400906002265, 0.03661759154397886, 0.038882597206493015, 0.04945262363155908, 0.051340128350320875, 0.07625519063797659, 0.06946017365043412, 0.9301623254058136, 0.9460173650434126, 0.8905247263118158, 0.13816534541336353, 0.056625141562853906, 0.04341260853152133, 0.03699509248773122, 0.03699509248773122, 0.04114760286900717, 0.04228010570026425, 0.053982634956587394, 0.06002265005662514, 0.06153265383163458, 0.06153265383163458, 0.06153265383163458, 0.0622876557191393, 0.8082295205738015, 0.9335598338995847, 0.8052095130237825, 0.06266515666289166, 0.06342015855039637, 0.07474518686296716, 0.06719516798791997, 0.06719516798791997, 0.06719516798791997, 0.06719516798791997, 0.06757266893167233, 0.06757266893167233, 0.06757266893167233, 0.06795016987542468, 0.06719516798791997, 0.06757266893167233, 0.06757266893167233, 0.06795016987542468, 0.06795016987542468, 0.06681766704416761, 0.06681766704416761, 0.0660626651566629, 0.23291808229520575, 0.6247640619101548, 0.8199320498301246, 0.5141562853907135, 0.06719516798791997, 0.06644016610041525, 0.0660626651566629, 0.0660626651566629, 0.06681766704416761, 0.06719516798791997, 0.06719516798791997, 0.06757266893167233, 0.06832767081917705, 0.06870517176292941, 0.06908267270668177, 0.06946017365043412, 0.06983767459418648, 0.06983767459418648, 0.07021517553793885, 0.07021517553793885, 0.07097017742544356, 0.07172517931294828, 0.07172517931294828, 0.07323518308795772, 0.07474518686296716, 0.07663269158172896, 0.08078520196300491, 0.10117025292563231, 0.10909777274443186, 0.1328803322008305, 0.18459796149490373, 0.2559456398640997, 0.3820309550773877, 0.7097017742544356], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/NAD_binding_11.gap.json b/pfam_gap_rates/NAD_binding_11.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..12f46fb822c3893fde42edcb5786f373fed749d5
--- /dev/null
+++ b/pfam_gap_rates/NAD_binding_11.gap.json
@@ -0,0 +1 @@
+{"family": "NAD_binding_11", "n_seqs": 3437, "length": 128, "gap_rates": [0.15013092813500145, 0.12103578702356707, 0.07506546406750073, 0.05760837940064009, 0.03491416933372127, 0.024730869944719232, 0.02327611288914751, 0.019493744544661042, 0.016293279022403257, 0.015420424789060227, 0.015420424789060227, 0.014838521966831539, 0.014547570555717195, 0.013674716322374164, 0.01338376491125982, 0.013092813500145475, 0.012219959266802444, 0.010765202211230724, 0.010765202211230724, 0.010765202211230724, 0.01047425080011638, 0.010183299389002037, 0.010183299389002037, 0.010183299389002037, 0.010183299389002037, 0.009892347977887692, 0.009601396566773349, 0.008728542333430317, 0.008728542333430317, 0.008146639511201629, 0.007564736688972942, 0.007564736688972942, 0.007564736688972942, 0.007855688100087285, 0.008146639511201629, 0.008146639511201629, 0.008437590922315974, 0.008437590922315974, 0.008728542333430317, 0.008728542333430317, 0.008146639511201629, 0.007855688100087285, 0.007855688100087285, 0.009310445155659005, 0.008728542333430317, 0.011056153622345069, 0.016002327611288916, 0.011638056444573755, 0.011347105033459412, 0.016584230433517602, 0.013965667733488507, 0.014256619144602852, 0.02618562700029095, 0.04858888565609543, 0.03520512074483561, 0.8193191736979925, 0.8239743962758219, 0.8274658132091941, 0.8254291533313937, 0.8216467849869072, 0.8161187081757346, 0.01716613325574629, 0.05149839976723887, 0.5373872563281932, 0.039860343322665116, 0.01571137620017457, 0.013965667733488507, 0.012219959266802444, 0.01338376491125982, 0.0119290078556881, 0.012801862089031132, 0.012219959266802444, 0.011638056444573755, 0.013674716322374164, 0.01774803607797498, 0.013092813500145475, 0.011347105033459412, 0.011056153622345069, 0.011056153622345069, 0.01047425080011638, 0.010765202211230724, 0.010765202211230724, 0.012510910677916789, 0.011347105033459412, 0.011638056444573755, 0.011347105033459412, 0.0119290078556881, 0.012510910677916789, 0.013092813500145475, 0.013965667733488507, 0.023567064300261856, 0.0238580157113762, 0.024439918533604887, 0.022112307244690137, 0.019784695955775384, 0.02094850160023276, 0.02676752982251964, 0.024730869944719232, 0.022112307244690137, 0.02298516147803317, 0.022694210066918824, 0.023567064300261856, 0.024730869944719232, 0.02618562700029095, 0.029677043933663078, 0.03054989816700611, 0.032586558044806514, 0.03433226651149258, 0.03811463485597905, 0.039860343322665116, 0.044515565900494616, 0.05586267093395403, 0.05062554553389584, 0.0523712540005819, 0.06255455338958393, 0.06109979633401222, 0.07361070701192901, 0.07535641547861507, 0.09194064591213268, 0.09368635437881874, 0.10299679953447774, 0.11318009892347979, 0.12569100960139656, 0.14052953156822812, 0.17835321501309281, 0.28862379982542913, 0.449228978760547, 0.7483270293860925], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/NAD_kinase.gap.json b/pfam_gap_rates/NAD_kinase.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..30fda5c2becf914ade49b8b048bc664f0b71751f
--- /dev/null
+++ b/pfam_gap_rates/NAD_kinase.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/NAGLU_N.gap.json b/pfam_gap_rates/NAGLU_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..76c20a56655b482815fbcd9f1dcfab67e63bfe88
--- /dev/null
+++ b/pfam_gap_rates/NAGLU_N.gap.json
@@ -0,0 +1 @@
+{"family": "NAGLU_N", "n_seqs": 250, "length": 103, "gap_rates": [0.864, 0.228, 0.136, 0.116, 0.104, 0.104, 0.104, 0.104, 0.1, 0.096, 0.1, 0.1, 0.776, 0.096, 0.1, 0.088, 0.088, 0.088, 0.084, 0.084, 0.084, 0.084, 0.08, 0.12, 0.664, 0.916, 0.948, 0.936, 0.856, 0.524, 0.232, 0.2, 0.86, 0.084, 0.068, 0.064, 0.06, 0.056, 0.048, 0.048, 0.048, 0.036, 0.036, 0.036, 0.032, 0.048, 0.028, 0.74, 0.84, 0.868, 0.936, 0.868, 0.8, 0.58, 0.028, 0.028, 0.012, 0.0, 0.0, 0.0, 0.004, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.004, 0.004, 0.004, 0.004, 0.004, 0.004, 0.004, 0.004, 0.004, 0.008, 0.008, 0.004, 0.004, 0.004, 0.008, 0.008, 0.016, 0.768, 0.772, 0.628, 0.02, 0.024, 0.028, 0.028, 0.032, 0.052, 0.688, 0.072, 0.076, 0.084, 0.104, 0.836, 0.816, 0.128, 0.14, 0.824], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/NAGidase.gap.json b/pfam_gap_rates/NAGidase.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..54f5d47dfe7f5a7cf000d34bc234144e0ceafecd
--- /dev/null
+++ b/pfam_gap_rates/NAGidase.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/NAP.gap.json b/pfam_gap_rates/NAP.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..72a6a904dfbb280bb251af7621fb67e7e1342503
--- /dev/null
+++ b/pfam_gap_rates/NAP.gap.json
@@ -0,0 +1 @@
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diff --git a/pfam_gap_rates/NCA2.gap.json b/pfam_gap_rates/NCA2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..7ea5b61730ab45a994d720d34d4fea88ad1a5646
--- /dev/null
+++ b/pfam_gap_rates/NCA2.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/NEAT.gap.json b/pfam_gap_rates/NEAT.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c1bd41ec5d78505c415586fd3537c1d9f19f0502
--- /dev/null
+++ b/pfam_gap_rates/NEAT.gap.json
@@ -0,0 +1 @@
+{"family": "NEAT", "n_seqs": 253, "length": 175, "gap_rates": [0.8853754940711462, 0.5217391304347826, 0.33201581027667987, 0.25296442687747034, 0.2134387351778656, 0.16205533596837945, 0.1383399209486166, 0.1225296442687747, 0.05533596837944664, 0.02766798418972332, 0.019762845849802372, 0.019762845849802372, 0.019762845849802372, 0.019762845849802372, 0.019762845849802372, 0.019762845849802372, 0.9130434782608695, 0.019762845849802372, 0.019762845849802372, 0.9367588932806324, 0.019762845849802372, 0.015810276679841896, 0.011857707509881422, 0.011857707509881422, 0.011857707509881422, 0.011857707509881422, 0.007905138339920948, 0.003952569169960474, 0.003952569169960474, 0.003952569169960474, 0.003952569169960474, 0.003952569169960474, 0.003952569169960474, 0.03162055335968379, 0.015810276679841896, 0.003952569169960474, 0.003952569169960474, 0.003952569169960474, 0.003952569169960474, 0.003952569169960474, 0.003952569169960474, 0.007905138339920948, 0.007905138339920948, 0.003952569169960474, 0.007905138339920948, 0.003952569169960474, 0.003952569169960474, 0.0, 0.0, 0.0, 0.0, 0.8300395256916996, 0.9367588932806324, 0.9446640316205533, 0.9169960474308301, 0.7984189723320159, 0.08300395256916997, 0.07905138339920949, 0.07114624505928854, 0.05928853754940711, 0.9090909090909091, 0.924901185770751, 0.932806324110672, 0.9288537549407114, 0.9169960474308301, 0.8972332015810277, 0.015810276679841896, 0.015810276679841896, 0.011857707509881422, 0.011857707509881422, 0.03557312252964427, 0.03162055335968379, 0.38735177865612647, 0.22134387351778656, 0.4150197628458498, 0.07509881422924901, 0.9051383399209486, 0.8853754940711462, 0.03162055335968379, 0.08300395256916997, 0.83399209486166, 0.8656126482213439, 0.8735177865612648, 0.8893280632411067, 0.9011857707509882, 0.9209486166007905, 0.924901185770751, 0.9446640316205533, 0.9486166007905138, 0.9407114624505929, 0.924901185770751, 0.9090909090909091, 0.8932806324110671, 0.8814229249011858, 0.8695652173913043, 0.8379446640316206, 0.8221343873517787, 0.16600790513833993, 0.19367588932806323, 0.11857707509881422, 0.11067193675889328, 0.08300395256916997, 0.13043478260869565, 0.16600790513833993, 0.9407114624505929, 0.11067193675889328, 0.09486166007905138, 0.1067193675889328, 0.06324110671936758, 0.8616600790513834, 0.8853754940711462, 0.8893280632411067, 0.9051383399209486, 0.9288537549407114, 0.932806324110672, 0.9367588932806324, 0.9367588932806324, 0.9288537549407114, 0.9169960474308301, 0.8972332015810277, 0.8893280632411067, 0.8774703557312253, 0.8537549407114624, 0.05533596837944664, 0.06324110671936758, 0.09090909090909091, 0.8300395256916996, 0.04743083003952569, 0.039525691699604744, 0.03557312252964427, 0.03557312252964427, 0.03162055335968379, 0.03162055335968379, 0.039525691699604744, 0.03162055335968379, 0.03162055335968379, 0.03557312252964427, 0.03557312252964427, 0.03557312252964427, 0.03557312252964427, 0.03557312252964427, 0.03557312252964427, 0.9367588932806324, 0.8814229249011858, 0.08300395256916997, 0.06324110671936758, 0.039525691699604744, 0.039525691699604744, 0.039525691699604744, 0.039525691699604744, 0.2608695652173913, 0.06719367588932806, 0.06324110671936758, 0.08695652173913043, 0.691699604743083, 0.8102766798418972, 0.8616600790513834, 0.8221343873517787, 0.758893280632411, 0.6442687747035574, 0.06719367588932806, 0.08300395256916997, 0.1976284584980237, 0.07905138339920949, 0.09090909090909091, 0.09090909090909091, 0.09486166007905138, 0.09881422924901186, 0.1067193675889328, 0.13438735177865613, 0.16205533596837945, 0.233201581027668, 0.30039525691699603, 0.4031620553359684, 0.8932806324110671], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/NMN_transporter.gap.json b/pfam_gap_rates/NMN_transporter.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..28c702d0e1d857eeb9c231c64152f95c40934212
--- /dev/null
+++ b/pfam_gap_rates/NMN_transporter.gap.json
@@ -0,0 +1 @@
+{"family": "NMN_transporter", "n_seqs": 663, "length": 222, "gap_rates": [0.7405731523378583, 0.25037707390648567, 0.09954751131221719, 0.0784313725490196, 0.0693815987933635, 0.06334841628959276, 0.05731523378582202, 0.05731523378582202, 0.05731523378582202, 0.05731523378582202, 0.05731523378582202, 0.05580693815987934, 0.05580693815987934, 0.05580693815987934, 0.05580693815987934, 0.05580693815987934, 0.05580693815987934, 0.05429864253393665, 0.05128205128205128, 0.048265460030165915, 0.048265460030165915, 0.048265460030165915, 0.04675716440422323, 0.04675716440422323, 0.04675716440422323, 0.04675716440422323, 0.04675716440422323, 0.04675716440422323, 0.04524886877828054, 0.04524886877828054, 0.043740573152337855, 0.043740573152337855, 0.043740573152337855, 0.043740573152337855, 0.043740573152337855, 0.043740573152337855, 0.04072398190045249, 0.04072398190045249, 0.04072398190045249, 0.04072398190045249, 0.042232277526395176, 0.04072398190045249, 0.04072398190045249, 0.8944193061840121, 0.8959276018099548, 0.8974358974358975, 0.8989441930618401, 0.8974358974358975, 0.8959276018099548, 0.8959276018099548, 0.8914027149321267, 0.04072398190045249, 0.042232277526395176, 0.042232277526395176, 0.042232277526395176, 0.042232277526395176, 0.042232277526395176, 0.0392156862745098, 0.03770739064856712, 0.03770739064856712, 0.03770739064856712, 0.03770739064856712, 0.03619909502262444, 0.03619909502262444, 0.03770739064856712, 0.7888386123680241, 0.03770739064856712, 0.03770739064856712, 0.03619909502262444, 0.03770739064856712, 0.03770739064856712, 0.03770739064856712, 0.03770739064856712, 0.0392156862745098, 0.9306184012066365, 0.9276018099547512, 0.0392156862745098, 0.0392156862745098, 0.04072398190045249, 0.05429864253393665, 0.05429864253393665, 0.07088989441930618, 0.07239819004524888, 0.20512820512820512, 0.4253393665158371, 0.7586726998491704, 0.8808446455505279, 0.9336349924585219, 0.9230769230769231, 0.8491704374057315, 0.6214177978883861, 0.29411764705882354, 0.16440422322775264, 0.06184012066365008, 0.9487179487179487, 0.8401206636500754, 0.07692307692307693, 0.770739064856712, 0.7390648567119156, 0.05128205128205128, 0.049773755656108594, 0.05128205128205128, 0.05128205128205128, 0.05128205128205128, 0.049773755656108594, 0.049773755656108594, 0.05128205128205128, 0.048265460030165915, 0.048265460030165915, 0.048265460030165915, 0.04675716440422323, 0.04524886877828054, 0.04524886877828054, 0.04524886877828054, 0.04524886877828054, 0.043740573152337855, 0.043740573152337855, 0.043740573152337855, 0.043740573152337855, 0.08597285067873303, 0.048265460030165915, 0.048265460030165915, 0.04524886877828054, 0.043740573152337855, 0.042232277526395176, 0.043740573152337855, 0.043740573152337855, 0.8959276018099548, 0.9215686274509803, 0.942684766214178, 0.9351432880844646, 0.9110105580693816, 0.8702865761689291, 0.0889894419306184, 0.9336349924585219, 0.9351432880844646, 0.9396681749622926, 0.947209653092006, 0.947209653092006, 0.9441930618401206, 0.9366515837104072, 0.9351432880844646, 0.918552036199095, 0.2684766214177979, 0.06184012066365008, 0.05731523378582202, 0.05128205128205128, 0.04675716440422323, 0.042232277526395176, 0.04072398190045249, 0.03770739064856712, 0.03770739064856712, 0.03770739064856712, 0.033182503770739065, 0.03167420814479638, 0.033182503770739065, 0.03167420814479638, 0.03167420814479638, 0.03167420814479638, 0.033182503770739065, 0.033182503770739065, 0.033182503770739065, 0.033182503770739065, 0.033182503770739065, 0.033182503770739065, 0.02865761689291101, 0.02865761689291101, 0.02865761689291101, 0.02865761689291101, 0.02865761689291101, 0.02865761689291101, 0.030165912518853696, 0.03167420814479638, 0.033182503770739065, 0.033182503770739065, 0.033182503770739065, 0.033182503770739065, 0.033182503770739065, 0.03469079939668175, 0.03469079939668175, 0.03469079939668175, 0.03469079939668175, 0.03469079939668175, 0.033182503770739065, 0.033182503770739065, 0.033182503770739065, 0.03469079939668175, 0.03469079939668175, 0.03469079939668175, 0.03469079939668175, 0.7858220211161387, 0.7903469079939668, 0.9245852187028658, 0.7903469079939668, 0.7888386123680241, 0.779788838612368, 0.03619909502262444, 0.04675716440422323, 0.04072398190045249, 0.03770739064856712, 0.03770739064856712, 0.03770739064856712, 0.03770739064856712, 0.03770739064856712, 0.03770739064856712, 0.03770739064856712, 0.0392156862745098, 0.0392156862745098, 0.0392156862745098, 0.0392156862745098, 0.0392156862745098, 0.0392156862745098, 0.0392156862745098, 0.04072398190045249, 0.042232277526395176, 0.042232277526395176, 0.042232277526395176, 0.043740573152337855, 0.09954751131221719, 0.11463046757164404, 0.13122171945701358, 0.34841628959276016], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/NOB1_Zn_bind.gap.json b/pfam_gap_rates/NOB1_Zn_bind.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..71f976a9642235ae519ac07bcba06c5f019a5f51
--- /dev/null
+++ b/pfam_gap_rates/NOB1_Zn_bind.gap.json
@@ -0,0 +1 @@
+{"family": "NOB1_Zn_bind", "n_seqs": 334, "length": 84, "gap_rates": [0.07784431137724551, 0.0658682634730539, 0.05688622754491018, 0.05089820359281437, 0.03592814371257485, 0.03592814371257485, 0.03293413173652695, 0.03293413173652695, 0.029940119760479042, 0.02694610778443114, 0.02694610778443114, 0.02694610778443114, 0.02694610778443114, 0.02694610778443114, 0.02694610778443114, 0.017964071856287425, 0.023952095808383235, 0.023952095808383235, 0.937125748502994, 0.937125748502994, 0.937125748502994, 0.03592814371257485, 0.023952095808383235, 0.017964071856287425, 0.008982035928143712, 0.008982035928143712, 0.008982035928143712, 0.008982035928143712, 0.008982035928143712, 0.008982035928143712, 0.008982035928143712, 0.008982035928143712, 0.008982035928143712, 0.008982035928143712, 0.8502994011976048, 0.008982035928143712, 0.008982035928143712, 0.008982035928143712, 0.005988023952095809, 0.005988023952095809, 0.0029940119760479044, 0.0029940119760479044, 0.0029940119760479044, 0.005988023952095809, 0.008982035928143712, 0.0, 0.0029940119760479044, 0.0029940119760479044, 0.8622754491017964, 0.005988023952095809, 0.0029940119760479044, 0.9131736526946108, 0.9131736526946108, 0.9251497005988024, 0.9251497005988024, 0.9131736526946108, 0.9131736526946108, 0.11976047904191617, 0.09880239520958084, 0.0, 0.0, 0.0029940119760479044, 0.0029940119760479044, 0.0, 0.008982035928143712, 0.017964071856287425, 0.011976047904191617, 0.9131736526946108, 0.014970059880239521, 0.011976047904191617, 0.02694610778443114, 0.020958083832335328, 0.029940119760479042, 0.03293413173652695, 0.029940119760479042, 0.041916167664670656, 0.04491017964071856, 0.04491017964071856, 0.04491017964071856, 0.04790419161676647, 0.05089820359281437, 0.0688622754491018, 0.12275449101796407, 0.16467065868263472], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/NPCBM.gap.json b/pfam_gap_rates/NPCBM.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f837ca0fe842235db570d7e1f961f9e283a9419a
--- /dev/null
+++ b/pfam_gap_rates/NPCBM.gap.json
@@ -0,0 +1 @@
+{"family": "NPCBM", "n_seqs": 389, "length": 169, "gap_rates": [0.6915167095115681, 0.519280205655527, 0.4241645244215938, 0.3856041131105398, 0.38046272493573263, 0.37275064267352187, 0.37275064267352187, 0.36503856041131105, 0.36246786632390743, 0.35989717223650386, 0.35475578406169667, 0.34704370179948585, 0.9485861182519281, 0.3264781491002571, 0.32390745501285345, 0.31362467866323906, 0.3161953727506427, 0.3161953727506427, 0.2879177377892031, 0.2802056555269923, 0.2750642673521851, 0.27249357326478146, 0.27249357326478146, 0.2699228791773779, 0.2596401028277635, 0.2519280205655527, 0.7377892030848329, 0.7737789203084833, 0.7840616966580977, 0.781491002570694, 0.7480719794344473, 0.7197943444730077, 0.22879177377892032, 0.2133676092544987, 0.9305912596401028, 0.2159383033419023, 0.20565552699228792, 0.9460154241645244, 0.1928020565552699, 0.17480719794344474, 0.17223650385604114, 0.17480719794344474, 0.18508997429305912, 0.17223650385604114, 0.8303341902313625, 0.8997429305912596, 0.9254498714652957, 0.897172236503856, 0.8251928020565553, 0.16966580976863754, 0.16966580976863754, 0.16452442159383032, 0.16195372750642673, 0.15424164524421594, 0.15424164524421594, 0.14910025706940874, 0.13624678663239073, 0.12853470437017994, 0.12082262210796915, 0.11311053984575835, 0.09511568123393316, 0.08997429305912596, 0.897172236503856, 0.910025706940874, 0.9460154241645244, 0.9023136246786633, 0.8894601542416453, 0.07197943444730077, 0.06940874035989718, 0.06426735218508997, 0.06426735218508997, 0.06426735218508997, 0.9485861182519281, 0.08740359897172237, 0.06940874035989718, 0.08226221079691516, 0.8329048843187661, 0.056555269922879174, 0.056555269922879174, 0.056555269922879174, 0.056555269922879174, 0.056555269922879174, 0.056555269922879174, 0.05398457583547558, 0.05398457583547558, 0.05398457583547558, 0.05398457583547558, 0.05398457583547558, 0.05398457583547558, 0.07197943444730077, 0.1953727506426735, 0.7712082262210797, 0.910025706940874, 0.9357326478149101, 0.8740359897172236, 0.6863753213367609, 0.10282776349614396, 0.08740359897172237, 0.07197943444730077, 0.06426735218508997, 0.05398457583547558, 0.8174807197943444, 0.05398457583547558, 0.05141388174807198, 0.04884318766066838, 0.04884318766066838, 0.05398457583547558, 0.05912596401028278, 0.07712082262210797, 0.07197943444730077, 0.06683804627249357, 0.9357326478149101, 0.9485861182519281, 0.9408740359897172, 0.9254498714652957, 0.06426735218508997, 0.06683804627249357, 0.05398457583547558, 0.061696658097686374, 0.05912596401028278, 0.09511568123393316, 0.06426735218508997, 0.06683804627249357, 0.061696658097686374, 0.061696658097686374, 0.061696658097686374, 0.061696658097686374, 0.07712082262210797, 0.2210796915167095, 0.09768637532133675, 0.07197943444730077, 0.06940874035989718, 0.06940874035989718, 0.06940874035989718, 0.06940874035989718, 0.06940874035989718, 0.06940874035989718, 0.9357326478149101, 0.06940874035989718, 0.06940874035989718, 0.06940874035989718, 0.06940874035989718, 0.06940874035989718, 0.06940874035989718, 0.06940874035989718, 0.06940874035989718, 0.07455012853470437, 0.07969151670951156, 0.08483290488431877, 0.10025706940874037, 0.11311053984575835, 0.12082262210796915, 0.15167095115681234, 0.9203084832904884, 0.2570694087403599, 0.20822622107969152, 0.21079691516709512, 0.19794344473007713, 0.20051413881748073, 0.20565552699228792, 0.20565552699228792, 0.20565552699228792, 0.2133676092544987, 0.2133676092544987, 0.2236503856041131, 0.23393316195372751, 0.2544987146529563, 0.2879177377892031, 0.8149100257069408], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/NPCBM_assoc.gap.json b/pfam_gap_rates/NPCBM_assoc.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a77c01792a6e9f27a6f6d465283baee3034508df
--- /dev/null
+++ b/pfam_gap_rates/NPCBM_assoc.gap.json
@@ -0,0 +1 @@
+{"family": "NPCBM_assoc", "n_seqs": 347, "length": 85, "gap_rates": [0.8242074927953891, 0.4697406340057637, 0.27953890489913547, 0.23054755043227665, 0.19596541786743515, 0.1642651296829971, 0.12968299711815562, 0.09221902017291066, 0.08357348703170028, 0.07780979827089338, 0.07204610951008646, 0.07204610951008646, 0.06628242074927954, 0.07780979827089338, 0.06340057636887608, 0.069164265129683, 0.069164265129683, 0.9337175792507204, 0.05763688760806916, 0.06340057636887608, 0.043227665706051875, 0.07204610951008646, 0.0345821325648415, 0.0345821325648415, 0.023054755043227664, 0.011527377521613832, 0.005763688760806916, 0.011527377521613832, 0.011527377521613832, 0.0, 0.005763688760806916, 0.9279538904899135, 0.005763688760806916, 0.002881844380403458, 0.002881844380403458, 0.002881844380403458, 0.0, 0.930835734870317, 0.6282420749279539, 0.23631123919308358, 0.17579250720461095, 0.011527377521613832, 0.002881844380403458, 0.005763688760806916, 0.008645533141210375, 0.01440922190201729, 0.011527377521613832, 0.01440922190201729, 0.8184438040345822, 0.9423631123919308, 0.9279538904899135, 0.6829971181556196, 0.005763688760806916, 0.002881844380403458, 0.005763688760806916, 0.005763688760806916, 0.008645533141210375, 0.011527377521613832, 0.01440922190201729, 0.01440922190201729, 0.011527377521613832, 0.008645533141210375, 0.008645533141210375, 0.008645533141210375, 0.008645533141210375, 0.008645533141210375, 0.008645533141210375, 0.01440922190201729, 0.020172910662824207, 0.01729106628242075, 0.025936599423631124, 0.03170028818443804, 0.0345821325648415, 0.07204610951008646, 0.07492795389048991, 0.1037463976945245, 0.17002881844380405, 0.1729106628242075, 0.1585014409221902, 0.1642651296829971, 0.17579250720461095, 0.21902017291066284, 0.2564841498559078, 0.40634005763688763, 0.7982708933717579], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/NPH3.gap.json b/pfam_gap_rates/NPH3.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..474aae764adcc2610703bcb90af3a3662c731817
--- /dev/null
+++ b/pfam_gap_rates/NPH3.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/NST1.gap.json b/pfam_gap_rates/NST1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..978cfacc978d4b0306b2c018e1241bcd453a61c0
--- /dev/null
+++ b/pfam_gap_rates/NST1.gap.json
@@ -0,0 +1 @@
+{"family": "NST1", "n_seqs": 143, "length": 218, "gap_rates": [0.9440559440559441, 0.9300699300699301, 0.916083916083916, 0.9020979020979021, 0.8881118881118881, 0.8811188811188811, 0.8671328671328671, 0.8531468531468531, 0.8461538461538461, 0.8321678321678322, 0.8321678321678322, 0.8111888111888111, 0.8111888111888111, 0.7972027972027972, 0.7972027972027972, 0.7832167832167832, 0.7832167832167832, 0.7832167832167832, 0.7762237762237763, 0.7622377622377622, 0.7202797202797203, 0.7132867132867133, 0.6993006993006993, 0.6783216783216783, 0.6783216783216783, 0.6643356643356644, 0.6993006993006993, 0.6153846153846154, 0.5944055944055944, 0.5944055944055944, 0.5734265734265734, 0.5454545454545454, 0.5244755244755245, 0.5244755244755245, 0.5104895104895105, 0.5174825174825175, 0.5244755244755245, 0.5104895104895105, 0.5034965034965035, 0.4965034965034965, 0.4755244755244755, 0.8741258741258742, 0.8811188811188811, 0.8811188811188811, 0.8881118881118881, 0.8951048951048951, 0.9090909090909091, 0.9090909090909091, 0.916083916083916, 0.9230769230769231, 0.9230769230769231, 0.9230769230769231, 0.9440559440559441, 0.9370629370629371, 0.9230769230769231, 0.9230769230769231, 0.916083916083916, 0.9090909090909091, 0.9090909090909091, 0.9090909090909091, 0.8881118881118881, 0.8811188811188811, 0.8811188811188811, 0.8741258741258742, 0.8741258741258742, 0.48951048951048953, 0.5244755244755245, 0.5174825174825175, 0.4825174825174825, 0.4755244755244755, 0.4825174825174825, 0.6013986013986014, 0.5594405594405595, 0.5104895104895105, 0.4755244755244755, 0.4405594405594406, 0.42657342657342656, 0.3916083916083916, 0.3776223776223776, 0.3776223776223776, 0.36363636363636365, 0.36363636363636365, 0.3776223776223776, 0.3916083916083916, 0.3916083916083916, 0.5944055944055944, 0.5594405594405595, 0.48951048951048953, 0.4405594405594406, 0.4195804195804196, 0.35664335664335667, 0.3356643356643357, 0.32167832167832167, 0.3006993006993007, 0.2937062937062937, 0.26573426573426573, 0.26573426573426573, 0.2727272727272727, 0.43356643356643354, 0.35664335664335667, 0.2727272727272727, 0.26573426573426573, 0.26573426573426573, 0.2727272727272727, 0.26573426573426573, 0.35664335664335667, 0.3146853146853147, 0.26573426573426573, 0.23076923076923078, 0.22377622377622378, 0.2097902097902098, 0.1888111888111888, 0.18181818181818182, 0.15384615384615385, 0.1958041958041958, 0.15384615384615385, 0.11888111888111888, 0.11888111888111888, 0.13286713286713286, 0.5734265734265734, 0.1258741258741259, 0.11888111888111888, 0.1048951048951049, 0.11188811188811189, 0.1048951048951049, 0.0979020979020979, 0.0979020979020979, 0.09090909090909091, 0.9020979020979021, 0.08391608391608392, 0.07692307692307693, 0.07692307692307693, 0.07692307692307693, 0.07692307692307693, 0.07692307692307693, 0.06993006993006994, 0.06993006993006994, 0.06993006993006994, 0.06993006993006994, 0.06993006993006994, 0.06993006993006994, 0.06993006993006994, 0.07692307692307693, 0.06993006993006994, 0.06993006993006994, 0.06993006993006994, 0.06993006993006994, 0.06993006993006994, 0.06993006993006994, 0.06993006993006994, 0.06993006993006994, 0.06993006993006994, 0.06993006993006994, 0.06993006993006994, 0.06993006993006994, 0.06993006993006994, 0.07692307692307693, 0.07692307692307693, 0.08391608391608392, 0.08391608391608392, 0.06993006993006994, 0.06993006993006994, 0.06993006993006994, 0.06993006993006994, 0.08391608391608392, 0.06993006993006994, 0.06993006993006994, 0.06993006993006994, 0.06993006993006994, 0.06993006993006994, 0.06293706293706294, 0.06293706293706294, 0.06293706293706294, 0.06293706293706294, 0.06293706293706294, 0.055944055944055944, 0.055944055944055944, 0.055944055944055944, 0.06993006993006994, 0.04895104895104895, 0.055944055944055944, 0.055944055944055944, 0.06293706293706294, 0.06293706293706294, 0.06293706293706294, 0.06293706293706294, 0.06993006993006994, 0.06993006993006994, 0.07692307692307693, 0.07692307692307693, 0.08391608391608392, 0.07692307692307693, 0.08391608391608392, 0.08391608391608392, 0.1048951048951049, 0.1048951048951049, 0.11188811188811189, 0.16083916083916083, 0.1888111888111888, 0.1888111888111888, 0.1958041958041958, 0.20279720279720279, 0.21678321678321677, 0.32167832167832167, 0.45454545454545453, 0.9440559440559441, 0.9370629370629371, 0.5874125874125874, 0.6853146853146853, 0.7062937062937062, 0.7132867132867133, 0.7342657342657343, 0.7832167832167832, 0.7832167832167832, 0.7902097902097902, 0.7902097902097902, 0.8041958041958042, 0.8531468531468531], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/NTR.gap.json b/pfam_gap_rates/NTR.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..0930984573ff488615cec27791301881300bcaac
--- /dev/null
+++ b/pfam_gap_rates/NTR.gap.json
@@ -0,0 +1 @@
+{"family": "NTR", "n_seqs": 438, "length": 126, "gap_rates": [0.7214611872146118, 0.3219178082191781, 0.2100456621004566, 0.20319634703196346, 0.15296803652968036, 0.7009132420091324, 0.6621004566210046, 0.13926940639269406, 0.136986301369863, 0.136986301369863, 0.0776255707762557, 0.06164383561643835, 0.0593607305936073, 0.05251141552511415, 0.05251141552511415, 0.05251141552511415, 0.9383561643835616, 0.9360730593607306, 0.05251141552511415, 0.05251141552511415, 0.0502283105022831, 0.04794520547945205, 0.0410958904109589, 0.0365296803652968, 0.0365296803652968, 0.9269406392694064, 0.8082191780821918, 0.0502283105022831, 0.04337899543378995, 0.04337899543378995, 0.03881278538812785, 0.0273972602739726, 0.0273972602739726, 0.0273972602739726, 0.0273972602739726, 0.0273972602739726, 0.0273972602739726, 0.0273972602739726, 0.0273972602739726, 0.0273972602739726, 0.0273972602739726, 0.0273972602739726, 0.02511415525114155, 0.9246575342465754, 0.906392694063927, 0.589041095890411, 0.1506849315068493, 0.0958904109589041, 0.03424657534246575, 0.0273972602739726, 0.0228310502283105, 0.02054794520547945, 0.02054794520547945, 0.0182648401826484, 0.01598173515981735, 0.0182648401826484, 0.01598173515981735, 0.01598173515981735, 0.0182648401826484, 0.0182648401826484, 0.01598173515981735, 0.01598173515981735, 0.1461187214611872, 0.5570776255707762, 0.9041095890410958, 0.3926940639269406, 0.01141552511415525, 0.01141552511415525, 0.01141552511415525, 0.0136986301369863, 0.182648401826484, 0.02054794520547945, 0.02054794520547945, 0.0182648401826484, 0.8744292237442922, 0.684931506849315, 0.0228310502283105, 0.02511415525114155, 0.02968036529680365, 0.02968036529680365, 0.02968036529680365, 0.02968036529680365, 0.0273972602739726, 0.03424657534246575, 0.0365296803652968, 0.0365296803652968, 0.03881278538812785, 0.771689497716895, 0.9383561643835616, 0.9474885844748858, 0.8333333333333334, 0.6575342465753424, 0.5159817351598174, 0.4771689497716895, 0.3082191780821918, 0.273972602739726, 0.2054794520547945, 0.22602739726027396, 0.2009132420091324, 0.8789954337899544, 0.8082191780821918, 0.2579908675799087, 0.24429223744292236, 0.21689497716894976, 0.21689497716894976, 0.0958904109589041, 0.08447488584474885, 0.08447488584474885, 0.0821917808219178, 0.0821917808219178, 0.08447488584474885, 0.0867579908675799, 0.0867579908675799, 0.091324200913242, 0.1004566210045662, 0.1095890410958904, 0.11643835616438356, 0.1278538812785388, 0.15753424657534246, 0.16210045662100456, 0.182648401826484, 0.2237442922374429, 0.2876712328767123, 0.3721461187214612, 0.5068493150684932, 0.773972602739726], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/NUDIX-like.gap.json b/pfam_gap_rates/NUDIX-like.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ee985420703103e7ef73914133ce4ac2666559b2
--- /dev/null
+++ b/pfam_gap_rates/NUDIX-like.gap.json
@@ -0,0 +1 @@
+{"family": "NUDIX-like", "n_seqs": 591, "length": 187, "gap_rates": [0.8984771573604061, 0.3993231810490694, 0.2910321489001692, 0.2098138747884941, 0.1895093062605753, 0.18274111675126903, 0.17766497461928935, 0.17428087986463622, 0.15736040609137056, 0.15228426395939088, 0.1505922165820643, 0.1455160744500846, 0.14213197969543148, 0.14213197969543148, 0.14213197969543148, 0.14213197969543148, 0.7783417935702199, 0.7986463620981388, 0.8392554991539763, 0.8527918781725888, 0.8595600676818951, 0.8646362098138748, 0.871404399323181, 0.883248730964467, 0.8849407783417935, 0.9001692047377327, 0.949238578680203, 0.9441624365482234, 0.8917089678510999, 0.8849407783417935, 0.8798646362098139, 0.868020304568528, 0.8612521150592216, 0.8544839255499154, 0.8443316412859561, 0.8087986463620981, 0.7901861252115059, 0.7478849407783418, 0.6565143824027073, 0.5397631133671743, 0.33671742808798644, 0.20304568527918782, 0.16751269035532995, 0.15736040609137056, 0.15905245346869712, 0.15397631133671744, 0.1455160744500846, 0.14382402707275804, 0.1404399323181049, 0.1353637901861252, 0.12859560067681894, 0.1319796954314721, 0.20473773265651438, 0.23011844331641285, 0.2098138747884941, 0.7123519458544839, 0.7478849407783418, 0.7884940778341794, 0.817258883248731, 0.8629441624365483, 0.883248730964467, 0.8984771573604061, 0.9204737732656514, 0.9272419627749577, 0.9441624365482234, 0.9238578680203046, 0.9137055837563451, 0.8950930626057529, 0.8730964467005076, 0.8206429780033841, 0.7986463620981388, 0.7749576988155669, 0.7326565143824028, 0.6971235194585449, 0.47715736040609136, 0.12859560067681894, 0.0676818950930626, 0.038917089678511, 0.023688663282571912, 0.01353637901861252, 0.011844331641285956, 0.01015228426395939, 0.01015228426395939, 0.00676818950930626, 0.005076142131979695, 0.00676818950930626, 0.9357021996615905, 0.00676818950930626, 0.01015228426395939, 0.011844331641285956, 0.00676818950930626, 0.7072758037225042, 0.7225042301184433, 0.7343485617597293, 0.7631133671742809, 0.7698815566835872, 0.8037225042301185, 0.8341793570219966, 0.8730964467005076, 0.8917089678510999, 0.9137055837563451, 0.934010152284264, 0.9475465313028765, 0.9390862944162437, 0.9187817258883249, 0.9001692047377327, 0.8849407783417935, 0.8595600676818951, 0.8206429780033841, 0.7749576988155669, 0.766497461928934, 0.7495769881556683, 0.7292724196277496, 0.7174280879864636, 0.6869712351945855, 0.4686971235194585, 0.01015228426395939, 0.008460236886632826, 0.005076142131979695, 0.00338409475465313, 0.00338409475465313, 0.005076142131979695, 0.005076142131979695, 0.005076142131979695, 0.005076142131979695, 0.005076142131979695, 0.005076142131979695, 0.00676818950930626, 0.008460236886632826, 0.5042301184433164, 0.6649746192893401, 0.6937394247038917, 0.7174280879864636, 0.805414551607445, 0.8730964467005076, 0.8984771573604061, 0.9137055837563451, 0.9475465313028765, 0.922165820642978, 0.9103214890016921, 0.8866328257191202, 0.8341793570219966, 0.7258883248730964, 0.7089678510998308, 0.6835871404399323, 0.6175972927241963, 0.4703891708967851, 0.4213197969543147, 0.34348561759729274, 0.2521150592216582, 0.10490693739424704, 0.04568527918781726, 0.0338409475465313, 0.025380710659898477, 0.021996615905245348, 0.01015228426395939, 0.00676818950930626, 0.011844331641285956, 0.011844331641285956, 0.01692047377326565, 0.043993231810490696, 0.025380710659898477, 0.02030456852791878, 0.01692047377326565, 0.8358714043993232, 0.9238578680203046, 0.8307952622673435, 0.06091370558375635, 0.021996615905245348, 0.01015228426395939, 0.01015228426395939, 0.011844331641285956, 0.011844331641285956, 0.01015228426395939, 0.011844331641285956, 0.011844331641285956, 0.011844331641285956, 0.011844331641285956, 0.011844331641285956, 0.011844331641285956, 0.011844331641285956, 0.01353637901861252, 0.015228426395939087, 0.015228426395939087, 0.018612521150592216, 0.021996615905245348, 0.032148900169204735], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/NUP.gap.json b/pfam_gap_rates/NUP.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..36f251d71ab3b077368d26f357a5cf5b8b945e57
--- /dev/null
+++ b/pfam_gap_rates/NUP.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/N_Asn_amidohyd.gap.json b/pfam_gap_rates/N_Asn_amidohyd.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c2b0b06f75f4681f0d1faac6fbdcf5f32a3f708c
--- /dev/null
+++ b/pfam_gap_rates/N_Asn_amidohyd.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Na_trans_assoc.gap.json b/pfam_gap_rates/Na_trans_assoc.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..4262a146a8e53902b14bc0349339ebad7d5296da
--- /dev/null
+++ b/pfam_gap_rates/Na_trans_assoc.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/NadA.gap.json b/pfam_gap_rates/NadA.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..68fb11577f208b00ece17a025e9fe833636f4e09
--- /dev/null
+++ b/pfam_gap_rates/NadA.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Neisseria_PilC.gap.json b/pfam_gap_rates/Neisseria_PilC.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..99304074d24d2809039fa412a07421fda2202aec
--- /dev/null
+++ b/pfam_gap_rates/Neisseria_PilC.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/NfI_DNAbd_pre-N.gap.json b/pfam_gap_rates/NfI_DNAbd_pre-N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..09d87ea10fb9d459e6f9be4736ffa242523bfcf2
--- /dev/null
+++ b/pfam_gap_rates/NfI_DNAbd_pre-N.gap.json
@@ -0,0 +1 @@
+{"family": "NfI_DNAbd_pre-N", "n_seqs": 121, "length": 40, "gap_rates": [0.628099173553719, 0.4049586776859504, 0.06611570247933884, 0.024793388429752067, 0.01652892561983471, 0.01652892561983471, 0.01652892561983471, 0.01652892561983471, 0.01652892561983471, 0.01652892561983471, 0.008264462809917356, 0.008264462809917356, 0.008264462809917356, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.008264462809917356, 0.008264462809917356, 0.008264462809917356, 0.03305785123966942, 0.05785123966942149, 0.05785123966942149, 0.0743801652892562], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Nic96.gap.json b/pfam_gap_rates/Nic96.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..6b11f88d8def30dad3fb636439084dbace056bf4
--- /dev/null
+++ b/pfam_gap_rates/Nic96.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Nitro_FeMo-Co.gap.json b/pfam_gap_rates/Nitro_FeMo-Co.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..12e41d70a890c58c0f1409a8b5705f910655baa8
--- /dev/null
+++ b/pfam_gap_rates/Nitro_FeMo-Co.gap.json
@@ -0,0 +1 @@
+{"family": "Nitro_FeMo-Co", "n_seqs": 1486, "length": 103, "gap_rates": [0.9158815612382234, 0.39098250336473755, 0.1911170928667564, 0.0955585464333782, 0.0639300134589502, 0.047106325706594884, 0.034993270524899055, 0.029609690444145357, 0.02759084791386272, 0.021534320323014805, 0.019515477792732168, 0.01816958277254374, 0.01816958277254374, 0.016823687752355317, 0.016823687752355317, 0.016150740242261104, 0.016150740242261104, 0.01547779273216689, 0.016150740242261104, 0.01547779273216689, 0.01547779273216689, 0.13930013458950202, 0.16218034993270525, 0.11238223418573351, 0.11372812920592194, 0.059892328398384924, 0.02086137281292059, 0.016823687752355317, 0.014131897711978465, 0.014131897711978465, 0.016823687752355317, 0.9010767160161507, 0.9475100942126514, 0.9353970390309556, 0.7362045760430687, 0.6776581426648721, 0.6399730820995962, 0.5127860026917901, 0.11305518169582772, 0.07267833109017496, 0.05518169582772544, 0.040376850605652756, 0.03768506056527591, 0.02086137281292059, 0.9246298788694481, 0.9300134589502019, 0.9205921938088829, 0.01278600269179004, 0.009421265141318977, 0.007402422611036339, 0.006729475100942127, 0.006729475100942127, 0.006729475100942127, 0.006729475100942127, 0.009421265141318977, 0.009421265141318977, 0.007402422611036339, 0.012113055181695828, 0.012113055181695828, 0.6574697173620457, 0.016823687752355317, 0.009421265141318977, 0.005383580080753701, 0.004037685060565276, 0.0033647375504710633, 0.0033647375504710633, 0.0033647375504710633, 0.0033647375504710633, 0.0033647375504710633, 0.004037685060565276, 0.004037685060565276, 0.005383580080753701, 0.005383580080753701, 0.005383580080753701, 0.008748317631224764, 0.006729475100942127, 0.006729475100942127, 0.006729475100942127, 0.007402422611036339, 0.007402422611036339, 0.007402422611036339, 0.008075370121130552, 0.010767160161507403, 0.008748317631224764, 0.008075370121130552, 0.008748317631224764, 0.010094212651413189, 0.010094212651413189, 0.14199192462987886, 0.6689098250336474, 0.019515477792732168, 0.02220726783310902, 0.021534320323014805, 0.026244952893674293, 0.03297442799461642, 0.0370121130551817, 0.04912516823687752, 0.06123822341857335, 0.07469717362045761, 0.10834454912516824, 0.14064602960969044, 0.18775235531628534, 0.39636608344549124], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Nitroreductase.gap.json b/pfam_gap_rates/Nitroreductase.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..bce44b941756adb51d376864956a81871d36672f
--- /dev/null
+++ b/pfam_gap_rates/Nitroreductase.gap.json
@@ -0,0 +1 @@
+{"family": "Nitroreductase", "n_seqs": 5000, "length": 230, "gap_rates": [0.6728, 0.4108, 0.2824, 0.2408, 0.216, 0.2126, 0.2104, 0.209, 0.9412, 0.2072, 0.2066, 0.2058, 0.2016, 0.1986, 0.193, 0.7892, 0.1882, 0.1866, 0.186, 0.1848, 0.1844, 0.1832, 0.1826, 0.1822, 0.182, 0.1818, 0.1798, 0.1794, 0.1768, 0.9268, 0.927, 0.9288, 0.9336, 0.9464, 0.9364, 0.9314, 0.928, 0.927, 0.8844, 0.1688, 0.17, 0.1712, 0.1702, 0.1698, 0.1704, 0.1706, 0.1706, 0.1698, 0.1724, 0.1712, 0.17, 0.1688, 0.1678, 0.1684, 0.169, 0.1716, 0.9144, 0.3674, 0.207, 0.2048, 0.2024, 0.2036, 0.2006, 0.8964, 0.9136, 0.9466, 0.9042, 0.8902, 0.203, 0.2064, 0.207, 0.2188, 0.2316, 0.2514, 0.2692, 0.28, 0.2922, 0.3014, 0.307, 0.3136, 0.3156, 0.3176, 0.3356, 0.338, 0.3416, 0.3454, 0.3566, 0.3826, 0.379, 0.3902, 0.4056, 0.5108, 0.562, 0.752, 0.7236, 0.797, 0.821, 0.8404, 0.8552, 0.8744, 0.8856, 0.8974, 0.9096, 0.92, 0.926, 0.9318, 0.9358, 0.9458, 0.949, 0.9408, 0.933, 0.9298, 0.9234, 0.9152, 0.9056, 0.89, 0.8802, 0.8658, 0.8476, 0.8332, 0.8064, 0.7884, 0.6952, 0.6572, 0.5878, 0.39, 0.359, 0.3226, 0.2894, 0.2638, 0.25, 0.2382, 0.2274, 0.2196, 0.2156, 0.2164, 0.2168, 0.2174, 0.2194, 0.2218, 0.2152, 0.8246, 0.8706, 0.9316, 0.9416, 0.9462, 0.9384, 0.8898, 0.861, 0.806, 0.6618, 0.6294, 0.6036, 0.5624, 0.4982, 0.47, 0.436, 0.4184, 0.3984, 0.3136, 0.2284, 0.2158, 0.2068, 0.1992, 0.194, 0.183, 0.1796, 0.1762, 0.1758, 0.1728, 0.1698, 0.167, 0.1668, 0.1664, 0.1668, 0.1664, 0.166, 0.1658, 0.1654, 0.1648, 0.1644, 0.1644, 0.1644, 0.1646, 0.1646, 0.1646, 0.1646, 0.1648, 0.1648, 0.1648, 0.1648, 0.1654, 0.166, 0.1668, 0.1668, 0.167, 0.1678, 0.1684, 0.9488, 0.9416, 0.1696, 0.183, 0.1908, 0.5996, 0.9024, 0.9434, 0.89, 0.58, 0.1746, 0.1736, 0.174, 0.175, 0.1756, 0.1828, 0.1836, 0.1836, 0.8832, 0.2098, 0.2398, 0.195, 0.1964, 0.1984, 0.2, 0.2038, 0.207, 0.2106, 0.2194, 0.225, 0.2316, 0.4504], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/NmrA.gap.json b/pfam_gap_rates/NmrA.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..04522dd543e2feae33c6f7aced67ad3b60bc5e12
--- /dev/null
+++ b/pfam_gap_rates/NmrA.gap.json
@@ -0,0 +1 @@
+{"family": "NmrA", "n_seqs": 3206, "length": 268, "gap_rates": [0.3378041172800998, 0.18902058640049907, 0.15970056144728634, 0.15096693699313787, 0.14254522769806613, 0.13849033063006863, 0.14192139737991266, 0.1260137242669994, 0.12476606363069245, 0.12071116656269494, 0.11790393013100436, 0.11790393013100436, 0.11728009981285091, 0.11572052401746726, 0.11353711790393013, 0.11353711790393013, 0.11291328758577666, 0.1132252027448534, 0.1132252027448534, 0.11260137242669994, 0.7457891453524641, 0.8783530879600748, 0.9098565190268247, 0.8312538989394884, 0.5667498440424205, 0.1091703056768559, 0.1091703056768559, 0.1082345601996257, 0.10511540860885839, 0.10480349344978165, 0.10542732376793512, 0.10386774797255147, 0.10262008733624454, 0.103243917654398, 0.103243917654398, 0.11696818465377418, 0.12195882719900188, 0.8087960074859638, 0.8727386150966937, 0.9017467248908297, 0.8858390517779164, 0.863069245165315, 0.7751091703056768, 0.1503431066749844, 0.17685589519650655, 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\ No newline at end of file
diff --git a/pfam_gap_rates/NodS.gap.json b/pfam_gap_rates/NodS.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..29eab269a2255eea137b8273e66ce3b1488d2fa3
--- /dev/null
+++ b/pfam_gap_rates/NodS.gap.json
@@ -0,0 +1 @@
+{"family": "NodS", "n_seqs": 117, "length": 157, "gap_rates": [0.9487179487179487, 0.9487179487179487, 0.9401709401709402, 0.9316239316239316, 0.7350427350427351, 0.42735042735042733, 0.10256410256410256, 0.10256410256410256, 0.10256410256410256, 0.10256410256410256, 0.10256410256410256, 0.1111111111111111, 0.11965811965811966, 0.10256410256410256, 0.10256410256410256, 0.09401709401709402, 0.09401709401709402, 0.09401709401709402, 0.1111111111111111, 0.1794871794871795, 0.1111111111111111, 0.1452991452991453, 0.11965811965811966, 0.1282051282051282, 0.07692307692307693, 0.08547008547008547, 0.18803418803418803, 0.36752136752136755, 0.1452991452991453, 0.07692307692307693, 0.09401709401709402, 0.06837606837606838, 0.05982905982905983, 0.05982905982905983, 0.042735042735042736, 0.03418803418803419, 0.017094017094017096, 0.017094017094017096, 0.017094017094017096, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.008547008547008548, 0.008547008547008548, 0.008547008547008548, 0.008547008547008548, 0.008547008547008548, 0.008547008547008548, 0.008547008547008548, 0.008547008547008548, 0.008547008547008548, 0.017094017094017096, 0.02564102564102564, 0.017094017094017096, 0.02564102564102564, 0.02564102564102564, 0.02564102564102564, 0.02564102564102564, 0.02564102564102564, 0.02564102564102564, 0.02564102564102564, 0.02564102564102564, 0.02564102564102564, 0.042735042735042736, 0.05982905982905983, 0.05128205128205128, 0.1282051282051282, 0.08547008547008547, 0.05128205128205128, 0.03418803418803419, 0.03418803418803419, 0.03418803418803419, 0.03418803418803419, 0.03418803418803419, 0.03418803418803419, 0.042735042735042736, 0.03418803418803419, 0.9316239316239316, 0.03418803418803419, 0.03418803418803419, 0.03418803418803419, 0.9487179487179487, 0.03418803418803419, 0.03418803418803419, 0.042735042735042736, 0.03418803418803419, 0.042735042735042736, 0.03418803418803419, 0.03418803418803419, 0.03418803418803419, 0.03418803418803419, 0.03418803418803419, 0.03418803418803419, 0.03418803418803419, 0.03418803418803419, 0.042735042735042736, 0.042735042735042736, 0.042735042735042736, 0.042735042735042736, 0.03418803418803419, 0.1111111111111111, 0.2222222222222222, 0.3162393162393162, 0.3076923076923077, 0.23076923076923078, 0.23931623931623933, 0.20512820512820512, 0.21367521367521367, 0.20512820512820512, 0.23076923076923078, 0.23076923076923078, 0.23076923076923078, 0.23931623931623933, 0.23076923076923078, 0.23076923076923078, 0.23931623931623933, 0.23076923076923078, 0.23931623931623933, 0.23931623931623933, 0.23931623931623933, 0.2564102564102564, 0.27350427350427353, 0.29914529914529914, 0.3504273504273504, 0.6324786324786325, 0.7435897435897436, 0.7948717948717948, 0.8376068376068376, 0.8547008547008547, 0.8803418803418803, 0.8974358974358975, 0.9316239316239316, 0.9401709401709402, 0.9401709401709402, 0.9401709401709402, 0.9401709401709402, 0.9401709401709402, 0.9401709401709402, 0.9487179487179487, 0.9487179487179487, 0.9487179487179487, 0.9487179487179487, 0.9487179487179487, 0.9487179487179487, 0.9487179487179487], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Nop16.gap.json b/pfam_gap_rates/Nop16.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..6f6e3393e2e3d0ee79313833e5fd6f089cebc47b
--- /dev/null
+++ b/pfam_gap_rates/Nop16.gap.json
@@ -0,0 +1 @@
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diff --git a/pfam_gap_rates/NusG.gap.json b/pfam_gap_rates/NusG.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a89a0f66511afeda21c5feb47ae33e4d72dd82fd
--- /dev/null
+++ b/pfam_gap_rates/NusG.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/O-antigen_lig.gap.json b/pfam_gap_rates/O-antigen_lig.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d66e1fa88b1ec2990f345ae7f09472bc063bc073
--- /dev/null
+++ b/pfam_gap_rates/O-antigen_lig.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/OAD_beta.gap.json b/pfam_gap_rates/OAD_beta.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..53c6d052168d0f3ffd3a405419b0093461567c0d
--- /dev/null
+++ b/pfam_gap_rates/OAD_beta.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/OAD_gamma.gap.json b/pfam_gap_rates/OAD_gamma.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..28871281a69ecc79a44b3c287cfaca2cc4db8fb8
--- /dev/null
+++ b/pfam_gap_rates/OAD_gamma.gap.json
@@ -0,0 +1 @@
+{"family": "OAD_gamma", "n_seqs": 522, "length": 92, "gap_rates": [0.8908045977011494, 0.41379310344827586, 0.18582375478927204, 0.12452107279693486, 0.0842911877394636, 0.06130268199233716, 0.0421455938697318, 0.032567049808429116, 0.034482758620689655, 0.028735632183908046, 0.0210727969348659, 0.017241379310344827, 0.017241379310344827, 0.013409961685823755, 0.011494252873563218, 0.013409961685823755, 0.013409961685823755, 0.011494252873563218, 0.009578544061302681, 0.007662835249042145, 0.007662835249042145, 0.007662835249042145, 0.007662835249042145, 0.007662835249042145, 0.007662835249042145, 0.007662835249042145, 0.007662835249042145, 0.007662835249042145, 0.007662835249042145, 0.005747126436781609, 0.009578544061302681, 0.011494252873563218, 0.011494252873563218, 0.009578544061302681, 0.011494252873563218, 0.01532567049808429, 0.02490421455938697, 0.032567049808429116, 0.03065134099616858, 0.038314176245210725, 0.03639846743295019, 0.03639846743295019, 0.044061302681992334, 0.04597701149425287, 0.04597701149425287, 0.04597701149425287, 0.04789272030651341, 0.04980842911877394, 0.05747126436781609, 0.07088122605363985, 0.09770114942528736, 0.13026819923371646, 0.18773946360153257, 0.26053639846743293, 0.35823754789272033, 0.4386973180076628, 0.5114942528735632, 0.5919540229885057, 0.6724137931034483, 0.7739463601532567, 0.8352490421455939, 0.8793103448275862, 0.9061302681992337, 0.9291187739463601, 0.9425287356321839, 0.9157088122605364, 0.89272030651341, 0.8659003831417624, 0.814176245210728, 0.7126436781609196, 0.6417624521072797, 0.5613026819923371, 0.4099616858237548, 0.3333333333333333, 0.10919540229885058, 0.09003831417624521, 0.08620689655172414, 0.0842911877394636, 0.08237547892720307, 0.08045977011494253, 0.08045977011494253, 0.08237547892720307, 0.08237547892720307, 0.0842911877394636, 0.08812260536398467, 0.09195402298850575, 0.09770114942528736, 0.11877394636015326, 0.1532567049808429, 0.23563218390804597, 0.39272030651340994, 0.7049808429118773], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/OCD_Mu_crystall.gap.json b/pfam_gap_rates/OCD_Mu_crystall.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..17f031a4a36738b10a688a3feb702662c6b1910e
--- /dev/null
+++ b/pfam_gap_rates/OCD_Mu_crystall.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/ODC_AZ.gap.json b/pfam_gap_rates/ODC_AZ.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..219c55857fe41aa169d722650c948a98b0113a27
--- /dev/null
+++ b/pfam_gap_rates/ODC_AZ.gap.json
@@ -0,0 +1 @@
+{"family": "ODC_AZ", "n_seqs": 219, "length": 119, "gap_rates": [0.7671232876712328, 0.7168949771689498, 0.7168949771689498, 0.7168949771689498, 0.7168949771689498, 0.7031963470319634, 0.7031963470319634, 0.6940639269406392, 0.6757990867579908, 0.6666666666666666, 0.6438356164383562, 0.639269406392694, 0.6164383561643836, 0.6073059360730594, 0.5570776255707762, 0.5251141552511416, 0.5205479452054794, 0.5159817351598174, 0.4977168949771689, 0.5068493150684932, 0.5205479452054794, 0.8995433789954338, 0.502283105022831, 0.5159817351598174, 0.9223744292237442, 0.3424657534246575, 0.1780821917808219, 0.1141552511415525, 0.0730593607305936, 0.0593607305936073, 0.0502283105022831, 0.0502283105022831, 0.0639269406392694, 0.045662100456621, 0.0502283105022831, 0.821917808219178, 0.0867579908675799, 0.1324200913242009, 0.0547945205479452, 0.0410958904109589, 0.045662100456621, 0.0365296803652968, 0.0319634703196347, 0.0319634703196347, 0.0273972602739726, 0.0273972602739726, 0.0273972602739726, 0.0273972602739726, 0.0273972602739726, 0.0273972602739726, 0.0182648401826484, 0.0182648401826484, 0.0182648401826484, 0.0136986301369863, 0.0136986301369863, 0.0136986301369863, 0.0136986301369863, 0.045662100456621, 0.9041095890410958, 0.0091324200913242, 0.0091324200913242, 0.0045662100456621, 0.0045662100456621, 0.0045662100456621, 0.0045662100456621, 0.0045662100456621, 0.0045662100456621, 0.0045662100456621, 0.0045662100456621, 0.0045662100456621, 0.0045662100456621, 0.0091324200913242, 0.0091324200913242, 0.7077625570776256, 0.1415525114155251, 0.0365296803652968, 0.0547945205479452, 0.0410958904109589, 0.0593607305936073, 0.4611872146118721, 0.0502283105022831, 0.0502283105022831, 0.0319634703196347, 0.0319634703196347, 0.0319634703196347, 0.0319634703196347, 0.0319634703196347, 0.0319634703196347, 0.0319634703196347, 0.0319634703196347, 0.0365296803652968, 0.0502283105022831, 0.0502283105022831, 0.0593607305936073, 0.0684931506849315, 0.1004566210045662, 0.1232876712328767, 0.1552511415525114, 0.1689497716894977, 0.5707762557077626, 0.9452054794520548, 0.6073059360730594, 0.6940639269406392, 0.684931506849315, 0.6073059360730594, 0.547945205479452, 0.5114155251141552, 0.3698630136986301, 0.365296803652968, 0.410958904109589, 0.4292237442922374, 0.3881278538812785, 0.3698630136986301, 0.3698630136986301, 0.3698630136986301, 0.3789954337899543, 0.3926940639269406, 0.4931506849315068, 0.7077625570776256], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/OGFr_N.gap.json b/pfam_gap_rates/OGFr_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..36b8f17e8daec45bcfac79af3b5c5da7e4d8cbbc
--- /dev/null
+++ b/pfam_gap_rates/OGFr_N.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/OSCP.gap.json b/pfam_gap_rates/OSCP.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..cb45879129464dd72312d56910d90bd81193b7e3
--- /dev/null
+++ b/pfam_gap_rates/OSCP.gap.json
@@ -0,0 +1 @@
+{"family": "OSCP", "n_seqs": 2401, "length": 175, "gap_rates": [0.49895876718034154, 0.35943356934610576, 0.3019575177009579, 0.280716368179925, 0.27405247813411077, 0.2611411911703457, 0.23198667221990837, 0.21199500208246563, 0.20324864639733445, 0.19408579758433986, 0.18950437317784258, 0.18492294877134527, 0.180341524364848, 0.17867555185339443, 0.19408579758433986, 0.18575593502707205, 0.18117451062057477, 0.1965847563515202, 0.17159516867971678, 0.1670137442732195, 0.16534777176176593, 0.1628488129945856, 0.1582673885880883, 0.153685964181591, 0.15243648479800084, 0.1495210329029571, 0.14868804664723032, 0.14785506039150353, 0.14702207413577675, 0.33027905039566846, 0.1499375260308205, 0.14660558100791338, 0.14493960849645982, 0.1453561016243232, 0.14410662224073303, 0.14202415660141607, 0.14327363598500625, 0.14202415660141607, 0.1411911703456893, 0.1411911703456893, 0.13994169096209913, 0.13952519783423573, 0.13994169096209913, 0.1411911703456893, 0.1416076634735527, 0.15576842982090797, 0.1374427321949188, 0.13369429404414826, 0.1282798833819242, 0.1286963765097876, 0.12578092461474386, 0.12453144523115368, 0.12119950020824656, 0.11828404831320283, 0.11620158267388588, 0.11453561016243231, 0.11203665139525198, 0.10787172011661808, 0.1070387338608913, 0.10662224073302791, 0.10537276134943774, 0.10453977509371096, 0.09912536443148688, 0.8987921699291962, 0.9291961682632237, 0.6747188671386922, 0.23157017909204497, 0.10037484381507705, 0.09537692628071637, 0.09121199500208246, 0.07538525614327364, 0.07413577675968347, 0.07330279050395669, 0.0728862973760933, 0.0728862973760933, 0.07246980424822991, 0.07163681799250313, 0.07205331112036652, 0.07038733860891296, 0.07038733860891296, 0.07205331112036652, 0.0728862973760933, 0.07205331112036652, 0.07205331112036652, 0.07413577675968347, 0.0687213660974594, 0.06663890045814244, 0.06538942107455227, 0.06538942107455227, 0.06247396917950854, 0.06205747605164515, 0.061224489795918366, 0.05789254477301124, 0.05872553102873802, 0.05622657226155769, 0.054144106622240736, 0.053311120366513955, 0.05206164098292378, 0.04831320283215327, 0.045397750937109536, 0.045397750937109536, 0.04081632653061224, 0.03956684714702208, 0.034152436484798, 0.03290295710120783, 0.03165347771761766, 0.027072053311120368, 0.02082465639316951, 0.019575177009579343, 0.01790920449812578, 0.01790920449812578, 0.018325697625989172, 0.018742190753852563, 0.018742190753852563, 0.0212411495210329, 0.023740108288213244, 0.0212411495210329, 0.022074135776759683, 0.022907122032486463, 0.024156601416076635, 0.024573094543940025, 0.022074135776759683, 0.022907122032486463, 0.0212411495210329, 0.022907122032486463, 0.024156601416076635, 0.024573094543940025, 0.023323615160349854, 0.023740108288213244, 0.022490628904623073, 0.023323615160349854, 0.024573094543940025, 0.022907122032486463, 0.023740108288213244, 0.6447313619325281, 0.05164514785506039, 0.038733860891295296, 0.03123698458975427, 0.022907122032486463, 0.02040816326530612, 0.02082465639316951, 0.0212411495210329, 0.0212411495210329, 0.022490628904623073, 0.021657642648896292, 0.023323615160349854, 0.024573094543940025, 0.024573094543940025, 0.024156601416076635, 0.024573094543940025, 0.024573094543940025, 0.024573094543940025, 0.024573094543940025, 0.025406080799666806, 0.027072053311120368, 0.02790503956684715, 0.029154518950437316, 0.030403998334027488, 0.03165347771761766, 0.03206997084548105, 0.034152436484798, 0.03498542274052478, 0.03581840899625156, 0.036234902124114954, 0.03998334027488547, 0.04123281965847563, 0.04206580591420241, 0.0424822990420658, 0.04581424406497293, 0.053311120366513955, 0.06497292794668888, 0.0895460224906289, 0.1361932528113286, 0.2615576842982091, 0.5276967930029155], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/OSR1_C.gap.json b/pfam_gap_rates/OSR1_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..fcff9c472ba0053357cb2942f9f8552cbe063008
--- /dev/null
+++ b/pfam_gap_rates/OSR1_C.gap.json
@@ -0,0 +1 @@
+{"family": "OSR1_C", "n_seqs": 205, "length": 39, "gap_rates": [0.07317073170731707, 0.03414634146341464, 0.03414634146341464, 0.02926829268292683, 0.02926829268292683, 0.02926829268292683, 0.024390243902439025, 0.4585365853658537, 0.45365853658536587, 0.45365853658536587, 0.45365853658536587, 0.45365853658536587, 0.48292682926829267, 0.9121951219512195, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.014634146341463415, 0.014634146341463415, 0.014634146341463415, 0.014634146341463415, 0.014634146341463415, 0.014634146341463415, 0.1024390243902439], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Oberon_cc.gap.json b/pfam_gap_rates/Oberon_cc.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..3e8ad746d05a743e2493c7574bac8331b22720a1
--- /dev/null
+++ b/pfam_gap_rates/Oberon_cc.gap.json
@@ -0,0 +1 @@
+{"family": "Oberon_cc", "n_seqs": 101, "length": 144, "gap_rates": [0.5445544554455446, 0.48514851485148514, 0.46534653465346537, 0.46534653465346537, 0.44554455445544555, 0.43564356435643564, 0.39603960396039606, 0.37623762376237624, 0.37623762376237624, 0.3564356435643564, 0.3564356435643564, 0.3564356435643564, 0.33663366336633666, 0.297029702970297, 0.2871287128712871, 0.9405940594059405, 0.9405940594059405, 0.9405940594059405, 0.8811881188118812, 0.24752475247524752, 0.24752475247524752, 0.22772277227722773, 0.21782178217821782, 0.19801980198019803, 0.12871287128712872, 0.12871287128712872, 0.1188118811881188, 0.10891089108910891, 0.10891089108910891, 0.09900990099009901, 0.07920792079207921, 0.06930693069306931, 0.16831683168316833, 0.04950495049504951, 0.039603960396039604, 0.0297029702970297, 0.019801980198019802, 0.009900990099009901, 0.0297029702970297, 0.009900990099009901, 0.009900990099009901, 0.009900990099009901, 0.009900990099009901, 0.009900990099009901, 0.009900990099009901, 0.009900990099009901, 0.009900990099009901, 0.009900990099009901, 0.009900990099009901, 0.009900990099009901, 0.009900990099009901, 0.009900990099009901, 0.009900990099009901, 0.009900990099009901, 0.009900990099009901, 0.009900990099009901, 0.009900990099009901, 0.009900990099009901, 0.009900990099009901, 0.009900990099009901, 0.009900990099009901, 0.009900990099009901, 0.009900990099009901, 0.009900990099009901, 0.009900990099009901, 0.009900990099009901, 0.009900990099009901, 0.009900990099009901, 0.009900990099009901, 0.009900990099009901, 0.009900990099009901, 0.009900990099009901, 0.0, 0.0, 0.0, 0.0, 0.0, 0.009900990099009901, 0.009900990099009901, 0.009900990099009901, 0.009900990099009901, 0.009900990099009901, 0.019801980198019802, 0.009900990099009901, 0.009900990099009901, 0.009900990099009901, 0.009900990099009901, 0.009900990099009901, 0.019801980198019802, 0.019801980198019802, 0.019801980198019802, 0.019801980198019802, 0.019801980198019802, 0.019801980198019802, 0.019801980198019802, 0.0297029702970297, 0.0297029702970297, 0.0297029702970297, 0.0297029702970297, 0.0297029702970297, 0.039603960396039604, 0.04950495049504951, 0.04950495049504951, 0.04950495049504951, 0.04950495049504951, 0.04950495049504951, 0.04950495049504951, 0.04950495049504951, 0.04950495049504951, 0.04950495049504951, 0.0594059405940594, 0.06930693069306931, 0.07920792079207921, 0.09900990099009901, 0.09900990099009901, 0.09900990099009901, 0.09900990099009901, 0.6831683168316832, 0.693069306930693, 0.8118811881188119, 0.8910891089108911, 0.900990099009901, 0.9306930693069307, 0.900990099009901, 0.8514851485148515, 0.7128712871287128, 0.6831683168316832, 0.6831683168316832, 0.1188118811881188, 0.12871287128712872, 0.13861386138613863, 0.13861386138613863, 0.1485148514851485, 0.12871287128712872, 0.13861386138613863, 0.12871287128712872, 0.12871287128712872, 0.12871287128712872, 0.12871287128712872, 0.12871287128712872, 0.12871287128712872, 0.12871287128712872, 0.12871287128712872, 0.15841584158415842], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/OmpH.gap.json b/pfam_gap_rates/OmpH.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..6139a1a52fc0e668f26225a475c6f77f39a0ee9e
--- /dev/null
+++ b/pfam_gap_rates/OmpH.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/OprB.gap.json b/pfam_gap_rates/OprB.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..aceca26da14baa794970b1ad2a45336cf66e8687
--- /dev/null
+++ b/pfam_gap_rates/OprB.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/OstA_2.gap.json b/pfam_gap_rates/OstA_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..afd3ea5561a9304b9d079d4d4cb99610c664402b
--- /dev/null
+++ b/pfam_gap_rates/OstA_2.gap.json
@@ -0,0 +1 @@
+{"family": "OstA_2", "n_seqs": 239, "length": 160, "gap_rates": [0.895397489539749, 0.6736401673640168, 0.5774058577405857, 0.5313807531380753, 0.5188284518828452, 0.497907949790795, 0.4895397489539749, 0.4686192468619247, 0.4309623430962343, 0.42677824267782427, 0.4225941422594142, 0.4225941422594142, 0.41841004184100417, 0.41422594142259417, 0.41422594142259417, 0.401673640167364, 0.9121338912133892, 0.38493723849372385, 0.3514644351464435, 0.32217573221757323, 0.29707112970711297, 0.28451882845188287, 0.28451882845188287, 0.2719665271966527, 0.26778242677824265, 0.26359832635983266, 0.26359832635983266, 0.2594142259414226, 0.24686192468619247, 0.24686192468619247, 0.26359832635983266, 0.24267782426778242, 0.24267782426778242, 0.24267782426778242, 0.23430962343096234, 0.2301255230125523, 0.22594142259414227, 0.2175732217573222, 0.21338912133891214, 0.21338912133891214, 0.20920502092050208, 0.20920502092050208, 0.20920502092050208, 0.20920502092050208, 0.21338912133891214, 0.20502092050209206, 0.21338912133891214, 0.2175732217573222, 0.20920502092050208, 0.20920502092050208, 0.2217573221757322, 0.21338912133891214, 0.20920502092050208, 0.20920502092050208, 0.20920502092050208, 0.20920502092050208, 0.20502092050209206, 0.20502092050209206, 0.20502092050209206, 0.20502092050209206, 0.19665271966527198, 0.200836820083682, 0.20502092050209206, 0.24686192468619247, 0.1799163179916318, 0.19246861924686193, 0.21338912133891214, 0.19665271966527198, 0.1589958158995816, 0.14644351464435146, 0.14644351464435146, 0.14644351464435146, 0.14644351464435146, 0.14644351464435146, 0.14644351464435146, 0.14644351464435146, 0.1506276150627615, 0.15481171548117154, 0.1589958158995816, 0.15481171548117154, 0.15481171548117154, 0.15481171548117154, 0.1589958158995816, 0.16317991631799164, 0.16317991631799164, 0.16317991631799164, 0.9288702928870293, 0.16736401673640167, 0.1506276150627615, 0.1506276150627615, 0.1506276150627615, 0.1506276150627615, 0.1506276150627615, 0.1506276150627615, 0.14644351464435146, 0.13389121338912133, 0.12552301255230125, 0.07531380753138076, 0.07112970711297072, 0.06276150627615062, 0.06694560669456066, 0.07112970711297072, 0.07112970711297072, 0.07112970711297072, 0.07112970711297072, 0.07531380753138076, 0.07531380753138076, 0.07112970711297072, 0.0794979079497908, 0.08368200836820083, 0.08368200836820083, 0.08368200836820083, 0.08368200836820083, 0.08786610878661087, 0.09205020920502092, 0.100418410041841, 0.100418410041841, 0.09623430962343096, 0.10460251046025104, 0.10460251046025104, 0.1087866108786611, 0.1087866108786611, 0.1087866108786611, 0.1087866108786611, 0.1087866108786611, 0.11297071129707113, 0.11715481171548117, 0.11715481171548117, 0.11715481171548117, 0.12552301255230125, 0.12133891213389121, 0.12133891213389121, 0.12552301255230125, 0.12552301255230125, 0.12552301255230125, 0.12552301255230125, 0.1297071129707113, 0.1297071129707113, 0.13807531380753138, 0.14225941422594143, 0.1506276150627615, 0.16736401673640167, 0.16736401673640167, 0.1799163179916318, 0.18410041841004185, 0.18828451882845187, 0.18828451882845187, 0.20502092050209206, 0.200836820083682, 0.20502092050209206, 0.20502092050209206, 0.2175732217573222, 0.2301255230125523, 0.2594142259414226, 0.26359832635983266, 0.29707112970711297, 0.301255230125523, 0.3263598326359833, 0.37656903765690375, 0.4476987447698745], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Oxidored_q2.gap.json b/pfam_gap_rates/Oxidored_q2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..8e1519496c9baeac1a06e8df42d39b41a9d9019c
--- /dev/null
+++ b/pfam_gap_rates/Oxidored_q2.gap.json
@@ -0,0 +1 @@
+{"family": "Oxidored_q2", "n_seqs": 2223, "length": 109, "gap_rates": [0.33828160143949615, 0.1862348178137652, 0.11785874943769681, 0.0692757534862798, 0.048582995951417005, 0.0413855150697256, 0.027440395861448492, 0.02564102564102564, 0.024291497975708502, 0.022042285200179937, 0.021592442645074223, 0.02114260008996851, 0.02114260008996851, 0.0206927575348628, 0.020242914979757085, 0.0206927575348628, 0.0206927575348628, 0.2807017543859649, 0.7926225820962663, 0.019343229869545658, 0.019343229869545658, 0.019343229869545658, 0.01799370220422852, 0.017543859649122806, 0.017543859649122806, 0.014394961763382817, 0.013945119208277103, 0.012595591542959963, 0.011695906432748537, 0.0103463787674314, 0.0103463787674314, 0.0103463787674314, 0.008547008547008548, 0.00899685110211426, 0.00899685110211426, 0.00899685110211426, 0.00899685110211426, 0.00899685110211426, 0.00899685110211426, 0.007647323436797121, 0.006747638326585695, 0.006747638326585695, 0.006297795771479982, 0.006747638326585695, 0.0103463787674314, 0.00899685110211426, 0.013945119208277103, 0.026540710751237068, 0.6005398110661269, 0.605038236617184, 0.5996401259559154, 0.5969410706252811, 0.5982905982905983, 0.5942420152946468, 0.7386414754835807, 0.8295096716149347, 0.8749437696806118, 0.7984705353126406, 0.6387764282501125, 0.598740440845704, 0.5856950067476383, 0.5807467386414755, 0.569050832208727, 0.5600539811066126, 0.43049932523616735, 0.4098065677013045, 0.022941970310391364, 0.015744489428699954, 0.010796221322537112, 0.00899685110211426, 0.007647323436797121, 0.007647323436797121, 0.007197480881691408, 0.007197480881691408, 0.007647323436797121, 0.008097165991902834, 0.007647323436797121, 0.008097165991902834, 0.007647323436797121, 0.008547008547008548, 0.008097165991902834, 0.008097165991902834, 0.008547008547008548, 0.008097165991902834, 0.008547008547008548, 0.008547008547008548, 0.00899685110211426, 0.00899685110211426, 0.00899685110211426, 0.00899685110211426, 0.00899685110211426, 0.00899685110211426, 0.011246063877642825, 0.016644174538911382, 0.01979307242465137, 0.02384165542060279, 0.026090868196131354, 0.03013945119208277, 0.033288349077822764, 0.04048582995951417, 0.0449842555105713, 0.049032838506522715, 0.05578047683310841, 0.06477732793522267, 0.0827710301394512, 0.10256410256410256, 0.22672064777327935, 0.34547908232118757, 0.8218623481781376], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Oxidored_q3.gap.json b/pfam_gap_rates/Oxidored_q3.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..2f454c80004fe410a883df7f405520a2cd06aefb
--- /dev/null
+++ b/pfam_gap_rates/Oxidored_q3.gap.json
@@ -0,0 +1 @@
+{"family": "Oxidored_q3", "n_seqs": 1414, "length": 163, "gap_rates": [0.5572842998585573, 0.0884016973125884, 0.04526166902404526, 0.03041018387553041, 0.028288543140028287, 0.027581329561527583, 0.027581329561527583, 0.02545968882602546, 0.02545968882602546, 0.024752475247524754, 0.024752475247524754, 0.024045261669024046, 0.024045261669024046, 0.024045261669024046, 0.02333804809052334, 0.021923620933521924, 0.021923620933521924, 0.021216407355021217, 0.021216407355021217, 0.019801980198019802, 0.019801980198019802, 0.019094766619519095, 0.019094766619519095, 0.019094766619519095, 0.018387553041018388, 0.018387553041018388, 0.018387553041018388, 0.019094766619519095, 0.019801980198019802, 0.019094766619519095, 0.019094766619519095, 0.018387553041018388, 0.018387553041018388, 0.018387553041018388, 0.018387553041018388, 0.018387553041018388, 0.018387553041018388, 0.018387553041018388, 0.018387553041018388, 0.01768033946251768, 0.018387553041018388, 0.01768033946251768, 0.014144271570014143, 0.01485148514851485, 0.01485148514851485, 0.01485148514851485, 0.015558698727015558, 0.01485148514851485, 0.01485148514851485, 0.014144271570014143, 0.014144271570014143, 0.014144271570014143, 0.014144271570014143, 0.014144271570014143, 0.014144271570014143, 0.014144271570014143, 0.014144271570014143, 0.014144271570014143, 0.014144271570014143, 0.1082036775106082, 0.6060820367751061, 0.801980198019802, 0.9497878359264498, 0.8988684582743989, 0.6697312588401697, 0.17114568599717114, 0.08981612446958982, 0.016973125884016973, 0.28005657708628007, 0.22347949080622348, 0.12446958981612447, 0.07920792079207921, 0.05304101838755304, 0.04950495049504951, 0.04172560113154172, 0.04101838755304102, 0.04031117397454031, 0.04455445544554455, 0.04172560113154172, 0.038896746817538894, 0.039603960396039604, 0.04172560113154172, 0.04384724186704385, 0.38755304101838756, 0.04101838755304102, 0.03536067892503536, 0.03536067892503536, 0.034653465346534656, 0.04526166902404526, 0.03536067892503536, 0.03818953323903819, 0.03818953323903819, 0.039603960396039604, 0.04314002828854314, 0.05586987270155587, 0.06364922206506365, 0.07213578500707214, 0.04667609618104668, 0.1364922206506365, 0.23125884016973125, 0.3628005657708628, 0.5042432814710043, 0.6626591230551626, 0.7574257425742574, 0.8734087694483734, 0.9172560113154172, 0.9328147100424328, 0.9264497878359265, 0.900990099009901, 0.8486562942008486, 0.7185289957567186, 0.5763790664780764, 0.4314002828854314, 0.2927864214992928, 0.1775106082036775, 0.12022630834512023, 0.0785007072135785, 0.35148514851485146, 0.29490806223479493, 0.21357850070721357, 0.13507779349363508, 0.0685997171145686, 0.06435643564356436, 0.05799151343705799, 0.055162659123055166, 0.055162659123055166, 0.05233380480905234, 0.05233380480905234, 0.05233380480905234, 0.051626591230551626, 0.051626591230551626, 0.051626591230551626, 0.051626591230551626, 0.051626591230551626, 0.05233380480905234, 0.05233380480905234, 0.05304101838755304, 0.05304101838755304, 0.05374823196605375, 0.05374823196605375, 0.056577086280056574, 0.05586987270155587, 0.05586987270155587, 0.05586987270155587, 0.057284299858557285, 0.057284299858557285, 0.0586987270155587, 0.0586987270155587, 0.0586987270155587, 0.0586987270155587, 0.0586987270155587, 0.0594059405940594, 0.060113154172560114, 0.060113154172560114, 0.0594059405940594, 0.0594059405940594, 0.06082036775106082, 0.06082036775106082, 0.06152758132956153, 0.06435643564356436, 0.07213578500707214, 0.0983026874115983, 0.18811881188118812], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/P2.gap.json b/pfam_gap_rates/P2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..7e3918a7bf35b3435b10e2bbc283cb2be91fec60
--- /dev/null
+++ b/pfam_gap_rates/P2.gap.json
@@ -0,0 +1 @@
+{"family": "P2", "n_seqs": 394, "length": 87, "gap_rates": [0.6522842639593909, 0.233502538071066, 0.1116751269035533, 0.025380710659898477, 0.015228426395939087, 0.012690355329949238, 0.012690355329949238, 0.012690355329949238, 0.012690355329949238, 0.012690355329949238, 0.012690355329949238, 0.030456852791878174, 0.01015228426395939, 0.005076142131979695, 0.0025380710659898475, 0.0025380710659898475, 0.0025380710659898475, 0.0025380710659898475, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.18274111675126903, 0.1802030456852792, 0.0025380710659898475, 0.0, 0.0, 0.0, 0.0, 0.8121827411167513, 0.8350253807106599, 0.8477157360406091, 0.8147208121827412, 0.799492385786802, 0.015228426395939087, 0.01015228426395939, 0.017766497461928935, 0.7817258883248731, 0.0025380710659898475, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0025380710659898475, 0.06091370558375635, 0.017766497461928935, 0.005076142131979695, 0.0025380710659898475, 0.005076142131979695, 0.005076142131979695, 0.005076142131979695, 0.005076142131979695, 0.005076142131979695, 0.005076142131979695, 0.005076142131979695, 0.005076142131979695, 0.005076142131979695, 0.07360406091370558, 0.03299492385786802, 0.012690355329949238, 0.012690355329949238, 0.015228426395939087, 0.017766497461928935, 0.04568527918781726, 0.06091370558375635, 0.07614213197969544, 0.116751269035533, 0.18274111675126903, 0.4543147208121827, 0.8401015228426396], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PA28_beta.gap.json b/pfam_gap_rates/PA28_beta.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..5376eba14d14188001b24f05eb8a37f9c797fb2b
--- /dev/null
+++ b/pfam_gap_rates/PA28_beta.gap.json
@@ -0,0 +1 @@
+{"family": "PA28_beta", "n_seqs": 291, "length": 143, "gap_rates": [0.43986254295532645, 0.3436426116838488, 0.2611683848797251, 0.23711340206185566, 0.22336769759450173, 0.20618556701030927, 0.19243986254295534, 0.18900343642611683, 0.18900343642611683, 0.1718213058419244, 0.1718213058419244, 0.16838487972508592, 0.16838487972508592, 0.16838487972508592, 0.16151202749140894, 0.15807560137457044, 0.15463917525773196, 0.15463917525773196, 0.15463917525773196, 0.14776632302405499, 0.14776632302405499, 0.15120274914089346, 0.15120274914089346, 0.15120274914089346, 0.140893470790378, 0.13745704467353953, 0.13745704467353953, 0.13402061855670103, 0.13402061855670103, 0.12714776632302405, 0.12714776632302405, 0.12371134020618557, 0.12714776632302405, 0.13058419243986255, 0.12027491408934708, 0.12027491408934708, 0.12027491408934708, 0.12371134020618557, 0.12371134020618557, 0.11683848797250859, 0.12027491408934708, 0.12371134020618557, 0.12371134020618557, 0.12714776632302405, 0.12371134020618557, 0.12714776632302405, 0.12371134020618557, 0.12371134020618557, 0.12714776632302405, 0.12027491408934708, 0.1134020618556701, 0.1134020618556701, 0.11683848797250859, 0.11683848797250859, 0.10996563573883161, 0.10652920962199312, 0.09965635738831616, 0.09965635738831616, 0.09965635738831616, 0.09965635738831616, 0.09965635738831616, 0.10309278350515463, 0.10996563573883161, 0.10996563573883161, 0.12371134020618557, 0.12371134020618557, 0.12371134020618557, 0.12714776632302405, 0.12714776632302405, 0.12371134020618557, 0.12714776632302405, 0.13745704467353953, 0.13058419243986255, 0.13058419243986255, 0.13058419243986255, 0.11683848797250859, 0.10996563573883161, 0.10996563573883161, 0.10996563573883161, 0.10996563573883161, 0.10996563573883161, 0.1134020618556701, 0.10996563573883161, 0.10996563573883161, 0.1134020618556701, 0.12027491408934708, 0.13402061855670103, 0.15807560137457044, 0.16151202749140894, 0.14776632302405499, 0.14776632302405499, 0.14432989690721648, 0.14432989690721648, 0.13745704467353953, 0.14776632302405499, 0.14432989690721648, 0.140893470790378, 0.140893470790378, 0.140893470790378, 0.14432989690721648, 0.14432989690721648, 0.15120274914089346, 0.15120274914089346, 0.15807560137457044, 0.15807560137457044, 0.16151202749140894, 0.16151202749140894, 0.16151202749140894, 0.16151202749140894, 0.16151202749140894, 0.16494845360824742, 0.16494845360824742, 0.16838487972508592, 0.16838487972508592, 0.1718213058419244, 0.16838487972508592, 0.16838487972508592, 0.16838487972508592, 0.16838487972508592, 0.1718213058419244, 0.17525773195876287, 0.17525773195876287, 0.18900343642611683, 0.19243986254295534, 0.19243986254295534, 0.2027491408934708, 0.20618556701030927, 0.20618556701030927, 0.21649484536082475, 0.21993127147766323, 0.22336769759450173, 0.2268041237113402, 0.2268041237113402, 0.2268041237113402, 0.23367697594501718, 0.24398625429553264, 0.24398625429553264, 0.2508591065292096, 0.2542955326460481, 0.26804123711340205, 0.30927835051546393, 0.422680412371134, 0.7147766323024055], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PAC2.gap.json b/pfam_gap_rates/PAC2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e74c77ce87483f6ea7364d494adff5e20d54dd64
--- /dev/null
+++ b/pfam_gap_rates/PAC2.gap.json
@@ -0,0 +1 @@
+{"family": "PAC2", "n_seqs": 825, "length": 296, "gap_rates": [0.6787878787878788, 0.13454545454545455, 0.0993939393939394, 0.06666666666666667, 0.05696969696969697, 0.05454545454545454, 0.04727272727272727, 0.044848484848484846, 0.044848484848484846, 0.044848484848484846, 0.044848484848484846, 0.04363636363636364, 0.04363636363636364, 0.04363636363636364, 0.041212121212121214, 0.041212121212121214, 0.041212121212121214, 0.04, 0.03878787878787879, 0.04, 0.041212121212121214, 0.044848484848484846, 0.04363636363636364, 0.037575757575757575, 0.03515151515151515, 0.03393939393939394, 0.03151515151515152, 0.030303030303030304, 0.030303030303030304, 0.027878787878787878, 0.027878787878787878, 0.027878787878787878, 0.027878787878787878, 0.027878787878787878, 0.02909090909090909, 0.23393939393939395, 0.030303030303030304, 0.027878787878787878, 0.2678787878787879, 0.26666666666666666, 0.26666666666666666, 0.263030303030303, 0.8727272727272727, 0.9139393939393939, 0.9418181818181818, 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\ No newline at end of file
diff --git a/pfam_gap_rates/PAC4.gap.json b/pfam_gap_rates/PAC4.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..483ffdbe71e842daf1072e3791763ecf42162c7f
--- /dev/null
+++ b/pfam_gap_rates/PAC4.gap.json
@@ -0,0 +1 @@
+{"family": "PAC4", "n_seqs": 195, "length": 96, "gap_rates": [0.6717948717948717, 0.16923076923076924, 0.11282051282051282, 0.08717948717948718, 0.08205128205128205, 0.06153846153846154, 0.05641025641025641, 0.05128205128205128, 0.046153846153846156, 0.041025641025641026, 0.041025641025641026, 0.035897435897435895, 0.035897435897435895, 0.02564102564102564, 0.02564102564102564, 0.02564102564102564, 0.02564102564102564, 0.02564102564102564, 0.02564102564102564, 0.03076923076923077, 0.035897435897435895, 0.1282051282051282, 0.10256410256410256, 0.19487179487179487, 0.558974358974359, 0.5538461538461539, 0.5743589743589743, 0.7897435897435897, 0.8666666666666667, 0.8666666666666667, 0.9230769230769231, 0.9435897435897436, 0.9487179487179487, 0.9435897435897436, 0.8769230769230769, 0.8666666666666667, 0.8666666666666667, 0.6, 0.5692307692307692, 0.5025641025641026, 0.1282051282051282, 0.020512820512820513, 0.020512820512820513, 0.020512820512820513, 0.02564102564102564, 0.02564102564102564, 0.02564102564102564, 0.02564102564102564, 0.020512820512820513, 0.020512820512820513, 0.015384615384615385, 0.015384615384615385, 0.010256410256410256, 0.9487179487179487, 0.9333333333333333, 0.5538461538461539, 0.2, 0.4461538461538462, 0.06666666666666667, 0.28717948717948716, 0.005128205128205128, 0.0, 0.0, 0.0, 0.0, 0.0, 0.005128205128205128, 0.005128205128205128, 0.005128205128205128, 0.6205128205128205, 0.035897435897435895, 0.05641025641025641, 0.015384615384615385, 0.0, 0.0, 0.005128205128205128, 0.005128205128205128, 0.005128205128205128, 0.005128205128205128, 0.010256410256410256, 0.010256410256410256, 0.010256410256410256, 0.020512820512820513, 0.035897435897435895, 0.041025641025641026, 0.041025641025641026, 0.041025641025641026, 0.041025641025641026, 0.041025641025641026, 0.041025641025641026, 0.041025641025641026, 0.041025641025641026, 0.041025641025641026, 0.046153846153846156, 0.06666666666666667, 0.12307692307692308], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PAH.gap.json b/pfam_gap_rates/PAH.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..7c9995caed0e0082ff82701d21d22d6ce03e51e5
--- /dev/null
+++ b/pfam_gap_rates/PAH.gap.json
@@ -0,0 +1 @@
+{"family": "PAH", "n_seqs": 1330, "length": 56, "gap_rates": [0.3609022556390977, 0.10225563909774436, 0.06015037593984962, 0.042105263157894736, 0.03383458646616541, 0.031578947368421054, 0.03007518796992481, 0.027819548872180452, 0.02706766917293233, 0.017293233082706767, 0.01804511278195489, 0.013533834586466165, 0.012030075187969926, 0.012030075187969926, 0.013533834586466165, 0.013533834586466165, 0.010526315789473684, 0.018796992481203006, 0.015789473684210527, 0.009022556390977444, 0.009022556390977444, 0.006015037593984963, 0.9195488721804511, 0.9278195488721804, 0.9293233082706767, 0.9315789473684211, 0.9360902255639098, 0.9496240601503759, 0.9315789473684211, 0.9293233082706767, 0.9285714285714286, 0.9278195488721804, 0.9195488721804511, 0.006766917293233083, 0.006015037593984963, 0.005263157894736842, 0.0030075187969924814, 0.0037593984962406013, 0.004511278195488722, 0.004511278195488722, 0.004511278195488722, 0.004511278195488722, 0.006766917293233083, 0.005263157894736842, 0.006766917293233083, 0.006766917293233083, 0.007518796992481203, 0.007518796992481203, 0.007518796992481203, 0.009022556390977444, 0.011278195488721804, 0.017293233082706767, 0.02481203007518797, 0.06315789473684211, 0.08045112781954887, 0.14511278195488722], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PAP1.gap.json b/pfam_gap_rates/PAP1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..4efd411c7703372017737e1df359f56d04f5fe75
--- /dev/null
+++ b/pfam_gap_rates/PAP1.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/PAP2_C.gap.json b/pfam_gap_rates/PAP2_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ca1aa0d55299cc775dcbe43270f6e352b3e2fc8d
--- /dev/null
+++ b/pfam_gap_rates/PAP2_C.gap.json
@@ -0,0 +1 @@
+{"family": "PAP2_C", "n_seqs": 551, "length": 82, "gap_rates": [0.44464609800362975, 0.17967332123411978, 0.11070780399274047, 0.07078039927404718, 0.050816696914700546, 0.047186932849364795, 0.047186932849364795, 0.04900181488203267, 0.04900181488203267, 0.04900181488203267, 0.04900181488203267, 0.04900181488203267, 0.047186932849364795, 0.050816696914700546, 0.04900181488203267, 0.04900181488203267, 0.045372050816696916, 0.047186932849364795, 0.045372050816696916, 0.047186932849364795, 0.04900181488203267, 0.050816696914700546, 0.05807622504537205, 0.06715063520871144, 0.06533575317604355, 0.056261343012704176, 0.050816696914700546, 0.045372050816696916, 0.18148820326678766, 0.44464609800362975, 0.8856624319419237, 0.9092558983666061, 0.941923774954628, 0.9455535390199638, 0.9310344827586207, 0.8947368421052632, 0.8656987295825771, 0.42105263157894735, 0.04900181488203267, 0.038112522686025406, 0.029038112522686024, 0.023593466424682397, 0.023593466424682397, 0.030852994555353903, 0.029038112522686024, 0.034482758620689655, 0.029038112522686024, 0.029038112522686024, 0.029038112522686024, 0.029038112522686024, 0.029038112522686024, 0.029038112522686024, 0.029038112522686024, 0.030852994555353903, 0.034482758620689655, 0.034482758620689655, 0.034482758620689655, 0.034482758620689655, 0.036297640653357534, 0.036297640653357534, 0.036297640653357534, 0.036297640653357534, 0.036297640653357534, 0.036297640653357534, 0.036297640653357534, 0.036297640653357534, 0.039927404718693285, 0.041742286751361164, 0.041742286751361164, 0.047186932849364795, 0.04900181488203267, 0.0544464609800363, 0.0544464609800363, 0.05989110707803993, 0.06715063520871144, 0.07622504537205081, 0.9165154264972777, 0.09618874773139746, 0.1560798548094374, 0.38475499092558985, 0.4500907441016334, 0.6696914700544465], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PAP_assoc.gap.json b/pfam_gap_rates/PAP_assoc.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e23251ea089eb3584105e0f7623f63f89b20041d
--- /dev/null
+++ b/pfam_gap_rates/PAP_assoc.gap.json
@@ -0,0 +1 @@
+{"family": "PAP_assoc", "n_seqs": 1200, "length": 83, "gap_rates": [0.42916666666666664, 0.175, 0.09833333333333333, 0.04833333333333333, 0.029166666666666667, 0.018333333333333333, 0.006666666666666667, 0.005, 0.004166666666666667, 0.0033333333333333335, 0.0025, 0.0016666666666666668, 0.0008333333333333334, 0.0016666666666666668, 0.19666666666666666, 0.9416666666666667, 0.9383333333333334, 0.0025, 0.0016666666666666668, 0.0016666666666666668, 0.0025, 0.0033333333333333335, 0.0016666666666666668, 0.0025, 0.0008333333333333334, 0.0008333333333333334, 0.004166666666666667, 0.005, 0.0008333333333333334, 0.005, 0.8233333333333334, 0.0033333333333333335, 0.006666666666666667, 0.055, 0.815, 0.020833333333333332, 0.02, 0.0125, 0.018333333333333333, 0.035, 0.045, 0.06, 0.06583333333333333, 0.07416666666666667, 0.5025, 0.7016666666666667, 0.7891666666666667, 0.8358333333333333, 0.8608333333333333, 0.9025, 0.91, 0.9175, 0.9225, 0.9308333333333333, 0.9483333333333334, 0.9291666666666667, 0.9175, 0.9108333333333334, 0.9083333333333333, 0.8916666666666667, 0.8425, 0.8141666666666667, 0.7458333333333333, 0.6941666666666667, 0.5175, 0.3858333333333333, 0.355, 0.2866666666666667, 0.2725, 0.1675, 0.12416666666666666, 0.1175, 0.115, 0.11416666666666667, 0.115, 0.11666666666666667, 0.12083333333333333, 0.12, 0.12583333333333332, 0.13666666666666666, 0.2, 0.31833333333333336, 0.5275], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PAS_4.gap.json b/pfam_gap_rates/PAS_4.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..de84032ca08892d957fb9dec3dea0ef5edf0751d
--- /dev/null
+++ b/pfam_gap_rates/PAS_4.gap.json
@@ -0,0 +1 @@
+{"family": "PAS_4", "n_seqs": 5000, "length": 125, "gap_rates": [0.6376, 0.3678, 0.2716, 0.1876, 0.1448, 0.115, 0.0906, 0.074, 0.0648, 0.059, 0.0538, 0.9278, 0.0464, 0.037, 0.0228, 0.0204, 0.018, 0.0148, 0.015, 0.0134, 0.0132, 0.0102, 0.0102, 0.0116, 0.0222, 0.0206, 0.0194, 0.9082, 0.0874, 0.0586, 0.0336, 0.0284, 0.0166, 0.0122, 0.0144, 0.0118, 0.0108, 0.0084, 0.007, 0.0058, 0.0046, 0.0038, 0.004, 0.9464, 0.9156, 0.0174, 0.9424, 0.0272, 0.0414, 0.0308, 0.0624, 0.159, 0.8306, 0.918, 0.9362, 0.894, 0.759, 0.06, 0.0418, 0.0252, 0.0174, 0.0146, 0.0112, 0.0074, 0.0076, 0.0084, 0.0084, 0.008, 0.0084, 0.0084, 0.0088, 0.0082, 0.0248, 0.0472, 0.0236, 0.0182, 0.0166, 0.0144, 0.0138, 0.015, 0.0692, 0.0616, 0.0618, 0.061, 0.6992, 0.8984, 0.9298, 0.8516, 0.457, 0.1294, 0.0864, 0.0424, 0.0296, 0.019, 0.0166, 0.0164, 0.0174, 0.0172, 0.0184, 0.0196, 0.0204, 0.0212, 0.0314, 0.1416, 0.1112, 0.142, 0.1118, 0.098, 0.0978, 0.1888, 0.0982, 0.0472, 0.04, 0.0404, 0.0438, 0.0458, 0.05, 0.0552, 0.0596, 0.066, 0.075, 0.0936, 0.1566, 0.2768, 0.664], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PCIF1_WW.gap.json b/pfam_gap_rates/PCIF1_WW.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..39f06a51b8413ab09d4b0059ec89f7fc62d6383b
--- /dev/null
+++ b/pfam_gap_rates/PCIF1_WW.gap.json
@@ -0,0 +1 @@
+{"family": "PCIF1_WW", "n_seqs": 144, "length": 223, "gap_rates": [0.5555555555555556, 0.5486111111111112, 0.5416666666666666, 0.5138888888888888, 0.5, 0.4791666666666667, 0.4791666666666667, 0.8819444444444444, 0.9236111111111112, 0.9375, 0.9027777777777778, 0.8541666666666666, 0.4722222222222222, 0.4583333333333333, 0.4583333333333333, 0.4305555555555556, 0.4027777777777778, 0.3819444444444444, 0.3333333333333333, 0.2638888888888889, 0.25, 0.1527777777777778, 0.1111111111111111, 0.09722222222222222, 0.09722222222222222, 0.09027777777777778, 0.09027777777777778, 0.09027777777777778, 0.09027777777777778, 0.09027777777777778, 0.09027777777777778, 0.09027777777777778, 0.09027777777777778, 0.09027777777777778, 0.09027777777777778, 0.09027777777777778, 0.09027777777777778, 0.09027777777777778, 0.09027777777777778, 0.0763888888888889, 0.375, 0.4444444444444444, 0.8194444444444444, 0.8680555555555556, 0.9375, 0.9375, 0.9097222222222222, 0.8472222222222222, 0.5763888888888888, 0.3819444444444444, 0.3263888888888889, 0.22916666666666666, 0.06944444444444445, 0.06944444444444445, 0.05555555555555555, 0.0625, 0.0625, 0.04861111111111111, 0.04861111111111111, 0.04861111111111111, 0.04861111111111111, 0.04861111111111111, 0.04861111111111111, 0.04861111111111111, 0.04861111111111111, 0.04861111111111111, 0.04861111111111111, 0.04861111111111111, 0.041666666666666664, 0.06944444444444445, 0.04861111111111111, 0.04861111111111111, 0.04861111111111111, 0.041666666666666664, 0.034722222222222224, 0.034722222222222224, 0.034722222222222224, 0.034722222222222224, 0.034722222222222224, 0.034722222222222224, 0.034722222222222224, 0.027777777777777776, 0.027777777777777776, 0.027777777777777776, 0.027777777777777776, 0.027777777777777776, 0.027777777777777776, 0.8888888888888888, 0.9027777777777778, 0.9166666666666666, 0.9236111111111112, 0.9236111111111112, 0.9236111111111112, 0.9305555555555556, 0.9305555555555556, 0.9375, 0.9375, 0.9375, 0.9375, 0.9375, 0.9305555555555556, 0.9305555555555556, 0.9305555555555556, 0.9236111111111112, 0.9236111111111112, 0.9166666666666666, 0.9097222222222222, 0.9027777777777778, 0.8819444444444444, 0.034722222222222224, 0.034722222222222224, 0.034722222222222224, 0.034722222222222224, 0.034722222222222224, 0.034722222222222224, 0.041666666666666664, 0.034722222222222224, 0.034722222222222224, 0.034722222222222224, 0.034722222222222224, 0.034722222222222224, 0.034722222222222224, 0.034722222222222224, 0.034722222222222224, 0.034722222222222224, 0.034722222222222224, 0.027777777777777776, 0.027777777777777776, 0.027777777777777776, 0.9375, 0.9097222222222222, 0.027777777777777776, 0.020833333333333332, 0.875, 0.9236111111111112, 0.9444444444444444, 0.9097222222222222, 0.8680555555555556, 0.020833333333333332, 0.034722222222222224, 0.041666666666666664, 0.027777777777777776, 0.8958333333333334, 0.8888888888888888, 0.027777777777777776, 0.034722222222222224, 0.034722222222222224, 0.034722222222222224, 0.034722222222222224, 0.034722222222222224, 0.034722222222222224, 0.05555555555555555, 0.0625, 0.0625, 0.04861111111111111, 0.04861111111111111, 0.04861111111111111, 0.04861111111111111, 0.04861111111111111, 0.04861111111111111, 0.0625, 0.0625, 0.0625, 0.05555555555555555, 0.05555555555555555, 0.05555555555555555, 0.05555555555555555, 0.05555555555555555, 0.0625, 0.0625, 0.06944444444444445, 0.06944444444444445, 0.6666666666666666, 0.6319444444444444, 0.6180555555555556, 0.09027777777777778, 0.09722222222222222, 0.09027777777777778, 0.09027777777777778, 0.09027777777777778, 0.09027777777777778, 0.09027777777777778, 0.09027777777777778, 0.09027777777777778, 0.09027777777777778, 0.09027777777777778, 0.125, 0.125, 0.1388888888888889, 0.125, 0.5555555555555556, 0.9027777777777778, 0.5138888888888888, 0.1527777777777778, 0.18055555555555555, 0.18055555555555555, 0.18055555555555555, 0.1736111111111111, 0.1736111111111111, 0.18055555555555555, 0.18055555555555555, 0.19444444444444445, 0.2013888888888889, 0.20833333333333334, 0.20833333333333334, 0.20833333333333334, 0.20833333333333334, 0.2152777777777778, 0.9444444444444444, 0.2222222222222222, 0.22916666666666666, 0.22916666666666666, 0.2361111111111111, 0.2361111111111111, 0.2361111111111111, 0.2361111111111111, 0.2638888888888889, 0.2638888888888889, 0.2638888888888889, 0.2708333333333333, 0.2916666666666667, 0.3125, 0.3611111111111111], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PDDEXK_9.gap.json b/pfam_gap_rates/PDDEXK_9.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d273650222807a33f4de2ef15552bc542468fdc7
--- /dev/null
+++ b/pfam_gap_rates/PDDEXK_9.gap.json
@@ -0,0 +1 @@
+{"family": "PDDEXK_9", "n_seqs": 998, "length": 121, "gap_rates": [0.9118236472945892, 0.2635270541082164, 0.20841683366733466, 0.20541082164328658, 0.1963927855711423, 0.18637274549098196, 0.1623246492985972, 0.15731462925851702, 0.1372745490981964, 0.12925851703406813, 0.10020040080160321, 0.07414829659318638, 0.05811623246492986, 0.05511022044088176, 0.05811623246492986, 0.9468937875751503, 0.7334669338677354, 0.43887775551102204, 0.047094188376753505, 0.04008016032064128, 0.03707414829659319, 0.03507014028056112, 0.03406813627254509, 0.03206412825651302, 0.03006012024048096, 0.02905811623246493, 0.028056112224448898, 0.028056112224448898, 0.028056112224448898, 0.026052104208416832, 0.02404809619238477, 0.02404809619238477, 0.023046092184368736, 0.021042084168336674, 0.021042084168336674, 0.02004008016032064, 0.02004008016032064, 0.02004008016032064, 0.01903807615230461, 0.01903807615230461, 0.844689378757515, 0.9108216432865731, 0.8016032064128257, 0.6733466933867736, 0.49498997995991983, 0.3807615230460922, 0.39579158316633267, 0.02905811623246493, 0.027054108216432865, 0.018036072144288578, 0.01603206412825651, 0.01603206412825651, 0.01603206412825651, 0.014028056112224449, 0.013026052104208416, 0.013026052104208416, 0.013026052104208416, 0.013026052104208416, 0.4559118236472946, 0.43286573146292584, 0.43687374749499, 0.4198396793587174, 0.3927855711422846, 0.2755511022044088, 0.27955911823647295, 0.023046092184368736, 0.03006012024048096, 0.01503006012024048, 0.013026052104208416, 0.01903807615230461, 0.01603206412825651, 0.7194388777555111, 0.8917835671342685, 0.9428857715430862, 0.9468937875751503, 0.9458917835671342, 0.935871743486974, 0.8256513026052105, 0.7104208416833667, 0.014028056112224449, 0.02004008016032064, 0.02004008016032064, 0.021042084168336674, 0.02004008016032064, 0.021042084168336674, 0.021042084168336674, 0.023046092184368736, 0.026052104208416832, 0.03006012024048096, 0.04408817635270541, 0.045090180360721446, 0.05110220440881764, 0.05410821643286573, 0.05511022044088176, 0.05511022044088176, 0.05711422845691383, 0.07515030060120241, 0.19238476953907815, 0.8026052104208417, 0.8887775551102205, 0.5901803607214429, 0.11322645290581163, 0.09018036072144289, 0.0811623246492986, 0.08216432865731463, 0.08517034068136273, 0.08817635270541083, 0.08817635270541083, 0.08917835671342686, 0.08917835671342686, 0.09018036072144289, 0.09519038076152304, 0.10020040080160321, 0.11422845691382766, 0.14529058116232466, 0.18036072144288579, 0.2575150300601202, 0.312625250501002, 0.4909819639278557, 0.7194388777555111, 0.8466933867735471], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PDEase_I_N.gap.json b/pfam_gap_rates/PDEase_I_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..131d76776db0ec5ccacb1bc194dc5ac04a3494ea
--- /dev/null
+++ b/pfam_gap_rates/PDEase_I_N.gap.json
@@ -0,0 +1 @@
+{"family": "PDEase_I_N", "n_seqs": 115, "length": 61, "gap_rates": [0.2, 0.16521739130434782, 0.1391304347826087, 0.11304347826086956, 0.10434782608695652, 0.08695652173913043, 0.08695652173913043, 0.0782608695652174, 0.0782608695652174, 0.06956521739130435, 0.06956521739130435, 0.06956521739130435, 0.06086956521739131, 0.043478260869565216, 0.034782608695652174, 0.034782608695652174, 0.02608695652173913, 0.02608695652173913, 0.02608695652173913, 0.008695652173913044, 0.008695652173913044, 0.017391304347826087, 0.017391304347826087, 0.017391304347826087, 0.017391304347826087, 0.017391304347826087, 0.008695652173913044, 0.008695652173913044, 0.008695652173913044, 0.008695652173913044, 0.008695652173913044, 0.017391304347826087, 0.034782608695652174, 0.017391304347826087, 0.008695652173913044, 0.008695652173913044, 0.008695652173913044, 0.06956521739130435, 0.21739130434782608, 0.1565217391304348, 0.16521739130434782, 0.017391304347826087, 0.017391304347826087, 0.017391304347826087, 0.017391304347826087, 0.02608695652173913, 0.02608695652173913, 0.02608695652173913, 0.02608695652173913, 0.02608695652173913, 0.02608695652173913, 0.02608695652173913, 0.02608695652173913, 0.043478260869565216, 0.05217391304347826, 0.06086956521739131, 0.06086956521739131, 0.06956521739130435, 0.08695652173913043, 0.08695652173913043, 0.10434782608695652], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PDR_CDR.gap.json b/pfam_gap_rates/PDR_CDR.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ca4c1d60c65d01b27a91449c4fbe4cf54961620d
--- /dev/null
+++ b/pfam_gap_rates/PDR_CDR.gap.json
@@ -0,0 +1 @@
+{"family": "PDR_CDR", "n_seqs": 1050, "length": 92, "gap_rates": [0.47904761904761906, 0.41619047619047617, 0.4095238095238095, 0.37238095238095237, 0.3047619047619048, 0.26476190476190475, 0.25523809523809526, 0.25523809523809526, 0.4514285714285714, 0.5380952380952381, 0.4066666666666667, 0.23238095238095238, 0.22285714285714286, 0.22095238095238096, 0.21714285714285714, 0.21714285714285714, 0.21333333333333335, 0.21333333333333335, 0.9219047619047619, 0.21333333333333335, 0.21333333333333335, 0.2123809523809524, 0.21047619047619048, 0.21047619047619048, 0.21142857142857144, 0.20761904761904762, 0.2057142857142857, 0.2, 0.17714285714285713, 0.16666666666666666, 0.11428571428571428, 0.06952380952380953, 0.03238095238095238, 0.025714285714285714, 0.01904761904761905, 0.015238095238095238, 0.012380952380952381, 0.16666666666666666, 0.010476190476190476, 0.015238095238095238, 0.007619047619047619, 0.007619047619047619, 0.007619047619047619, 0.007619047619047619, 0.005714285714285714, 0.009523809523809525, 0.006666666666666667, 0.005714285714285714, 0.005714285714285714, 0.005714285714285714, 0.005714285714285714, 0.006666666666666667, 0.006666666666666667, 0.005714285714285714, 0.008571428571428572, 0.008571428571428572, 0.008571428571428572, 0.008571428571428572, 0.008571428571428572, 0.008571428571428572, 0.009523809523809525, 0.009523809523809525, 0.010476190476190476, 0.011428571428571429, 0.012380952380952381, 0.012380952380952381, 0.01904761904761905, 0.01904761904761905, 0.023809523809523808, 0.03428571428571429, 0.05142857142857143, 0.05523809523809524, 0.06761904761904762, 0.08666666666666667, 0.10571428571428572, 0.12666666666666668, 0.19428571428571428, 0.20476190476190476, 0.20952380952380953, 0.21714285714285714, 0.22476190476190477, 0.23047619047619047, 0.22952380952380952, 0.23142857142857143, 0.23333333333333334, 0.23809523809523808, 0.24761904761904763, 0.26285714285714284, 0.28476190476190477, 0.34, 0.44761904761904764, 0.7352380952380952], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PDR_assoc.gap.json b/pfam_gap_rates/PDR_assoc.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..bcec943bf5874a7ce42c7dc60932ecec90369a8e
--- /dev/null
+++ b/pfam_gap_rates/PDR_assoc.gap.json
@@ -0,0 +1 @@
+{"family": "PDR_assoc", "n_seqs": 654, "length": 67, "gap_rates": [0.2308868501529052, 0.2217125382262997, 0.20948012232415902, 0.20795107033639143, 0.20489296636085627, 0.29510703363914376, 0.8899082568807339, 0.8119266055045872, 0.6100917431192661, 0.13761467889908258, 0.06574923547400612, 0.0382262996941896, 0.024464831804281346, 0.01834862385321101, 0.01529051987767584, 0.01529051987767584, 0.01529051987767584, 0.013761467889908258, 0.013761467889908258, 0.013761467889908258, 0.013761467889908258, 0.013761467889908258, 0.010703363914373088, 0.010703363914373088, 0.010703363914373088, 0.010703363914373088, 0.010703363914373088, 0.009174311926605505, 0.0045871559633027525, 0.0045871559633027525, 0.0045871559633027525, 0.0030581039755351682, 0.0030581039755351682, 0.0045871559633027525, 0.0045871559633027525, 0.0045871559633027525, 0.0030581039755351682, 0.0030581039755351682, 0.0015290519877675841, 0.0015290519877675841, 0.0015290519877675841, 0.0015290519877675841, 0.0015290519877675841, 0.0015290519877675841, 0.0030581039755351682, 0.0030581039755351682, 0.0030581039755351682, 0.0030581039755351682, 0.0061162079510703364, 0.0061162079510703364, 0.0061162079510703364, 0.0061162079510703364, 0.0061162079510703364, 0.0061162079510703364, 0.00764525993883792, 0.010703363914373088, 0.01529051987767584, 0.022935779816513763, 0.05045871559633028, 0.08103975535168195, 0.09480122324159021, 0.12079510703363915, 0.13761467889908258, 0.15749235474006115, 0.19418960244648317, 0.28134556574923547, 0.47706422018348627], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PEX11.gap.json b/pfam_gap_rates/PEX11.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e969fa0afe02b75309c08664247b4bc716a50e9c
--- /dev/null
+++ b/pfam_gap_rates/PEX11.gap.json
@@ -0,0 +1 @@
+{"family": "PEX11", "n_seqs": 746, "length": 281, "gap_rates": [0.6541554959785523, 0.4906166219839142, 0.39544235924932974, 0.3297587131367292, 0.30563002680965146, 0.2707774798927614, 0.2520107238605898, 0.2453083109919571, 0.24262734584450402, 0.23994638069705093, 0.23324396782841822, 0.22788203753351208, 0.22386058981233245, 0.22386058981233245, 0.22386058981233245, 0.21849865951742628, 0.21849865951742628, 0.2131367292225201, 0.20777479892761394, 0.2037533512064343, 0.2037533512064343, 0.20509383378016086, 0.2037533512064343, 0.20509383378016086, 0.20241286863270777, 0.20107238605898123, 0.20107238605898123, 0.20107238605898123, 0.28820375335120646, 0.2801608579088472, 0.33378016085790885, 0.34584450402144773, 0.37131367292225204, 0.3780160857908847, 0.3820375335120643, 0.49865951742627346, 0.4128686327077748, 0.900804289544236, 0.23190348525469168, 0.19571045576407506, 0.1863270777479893, 0.17292225201072386, 0.16353887399463807, 0.14611260053619302, 0.1380697050938338, 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\ No newline at end of file
diff --git a/pfam_gap_rates/PFOR_II.gap.json b/pfam_gap_rates/PFOR_II.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..039a980628b6cbd6de8d6713cbe9c0ca66bc50ab
--- /dev/null
+++ b/pfam_gap_rates/PFOR_II.gap.json
@@ -0,0 +1 @@
+{"family": "PFOR_II", "n_seqs": 2408, "length": 110, "gap_rates": [0.14825581395348839, 0.055232558139534885, 0.02117940199335548, 0.005813953488372093, 0.003737541528239203, 0.0033222591362126247, 0.0033222591362126247, 0.0020764119601328905, 0.0020764119601328905, 0.0020764119601328905, 0.0024916943521594683, 0.0020764119601328905, 0.0020764119601328905, 0.0020764119601328905, 0.0020764119601328905, 0.0024916943521594683, 0.0024916943521594683, 0.0020764119601328905, 0.0020764119601328905, 0.0020764119601328905, 0.0024916943521594683, 0.003737541528239203, 0.0070598006644518275, 0.007890365448504983, 0.007475083056478406, 0.01910299003322259, 0.014950166112956811, 0.005398671096345515, 0.0016611295681063123, 0.0012458471760797341, 0.0008305647840531562, 0.0008305647840531562, 0.0008305647840531562, 0.0008305647840531562, 0.0008305647840531562, 0.0012458471760797341, 0.0008305647840531562, 0.0008305647840531562, 0.0004152823920265781, 0.0, 0.005813953488372093, 0.0, 0.050664451827242524, 0.00872093023255814, 0.9377076411960132, 0.007890365448504983, 0.9269102990033222, 0.0012458471760797341, 0.0020764119601328905, 0.9414451827242525, 0.005813953488372093, 0.01287375415282392, 0.8932724252491694, 0.029485049833887042, 0.011212624584717609, 0.008305647840531562, 0.005813953488372093, 0.0029069767441860465, 0.0024916943521594683, 0.0024916943521594683, 0.0024916943521594683, 0.0024916943521594683, 0.004568106312292359, 0.005813953488372093, 0.0070598006644518275, 0.007890365448504983, 0.3729235880398671, 0.43480066445182725, 0.428156146179402, 0.42566445182724255, 0.4007475083056478, 0.5444352159468439, 0.019933554817275746, 0.020764119601328904, 0.02408637873754153, 0.029069767441860465, 0.038621262458471764, 0.04609634551495016, 0.049003322259136214, 0.05647840531561462, 0.06478405315614617, 0.07350498338870431, 0.08264119601328904, 0.09966777408637874, 0.12333887043189369, 0.14742524916943522, 0.6627906976744186, 0.9136212624584718, 0.6266611295681063, 0.5340531561461794, 0.5124584717607974, 0.2616279069767442, 0.23338870431893688, 0.2238372093023256, 0.23338870431893688, 0.2441860465116279, 0.2549833887043189, 0.2653654485049834, 0.27408637873754155, 0.2960963455149502, 0.3064784053156146, 0.31353820598006643, 0.32475083056478404, 0.34053156146179403, 0.3504983388704319, 0.3654485049833887, 0.38787375415282394, 0.4381229235880399, 0.4950166112956811, 0.6424418604651163], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PGG.gap.json b/pfam_gap_rates/PGG.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..895b5c817f64dfe0f45443a745e5cbcd7cf304f3
--- /dev/null
+++ b/pfam_gap_rates/PGG.gap.json
@@ -0,0 +1 @@
+{"family": "PGG", "n_seqs": 2008, "length": 137, "gap_rates": [0.9432270916334662, 0.5657370517928287, 0.3979083665338645, 0.2689243027888446, 0.1847609561752988, 0.1344621513944223, 0.10209163346613546, 0.08964143426294821, 0.08217131474103585, 0.07818725099601594, 0.07470119521912351, 0.060756972111553786, 0.05677290836653386, 0.054780876494023904, 0.052788844621513946, 0.05179282868525897, 0.05079681274900399, 0.05029880478087649, 0.04880478087649402, 0.04880478087649402, 0.045318725099601595, 0.044820717131474105, 0.044820717131474105, 0.044820717131474105, 0.043824701195219126, 0.04133466135458167, 0.0398406374501992, 0.037350597609561755, 0.035856573705179286, 0.035358565737051796, 0.03187250996015936, 0.03187250996015936, 0.03187250996015936, 0.24452191235059761, 0.2554780876494024, 0.12201195219123506, 0.2300796812749004, 0.7310756972111554, 0.8172310756972112, 0.8700199203187251, 0.900398406374502, 0.9153386454183267, 0.9362549800796812, 0.9447211155378487, 0.9233067729083665, 0.9068725099601593, 0.8904382470119522, 0.8520916334661355, 0.7813745019920318, 0.5826693227091634, 0.35308764940239046, 0.8167330677290837, 0.5343625498007968, 0.20169322709163345, 0.07071713147410359, 0.044322709163346616, 0.04282868525896414, 0.04033864541832669, 0.03934262948207171, 0.04233067729083665, 0.046812749003984064, 0.07569721115537849, 0.599601593625498, 0.052788844621513946, 0.04880478087649402, 0.053784860557768925, 0.5552788844621513, 0.061752988047808766, 0.046314741035856574, 0.046812749003984064, 0.045816733067729085, 0.046314741035856574, 0.04880478087649402, 0.04880478087649402, 0.05129482071713148, 0.052290836653386456, 0.052290836653386456, 0.054282868525896415, 0.05727091633466135, 0.05976095617529881, 0.05926294820717132, 0.05876494023904383, 0.061254980079681276, 0.061752988047808766, 0.06274900398406374, 0.06424302788844621, 0.0647410358565737, 0.06573705179282868, 0.06623505976095617, 0.06673306772908366, 0.06822709163346613, 0.9123505976095617, 0.49850597609561753, 0.15737051792828685, 0.7783864541832669, 0.2340637450199203, 0.18426294820717132, 0.8182270916334662, 0.8431274900398407, 0.7848605577689243, 0.6110557768924303, 0.5129482071713147, 0.42828685258964144, 0.39641434262948205, 0.2355577689243028, 0.14741035856573706, 0.13595617529880477, 0.1603585657370518, 0.26095617529880477, 0.20916334661354583, 0.24153386454183268, 0.11952191235059761, 0.11802788844621515, 0.11553784860557768, 0.11703187250996015, 0.11752988047808766, 0.11703187250996015, 0.11802788844621515, 0.11952191235059761, 0.12151394422310757, 0.125, 0.13197211155378485, 0.13645418326693226, 0.14193227091633467, 0.14641434262948208, 0.150398406374502, 0.15587649402390438, 0.15836653386454183, 0.16284860557768924, 0.16533864541832669, 0.16832669322709162, 0.17380478087649404, 0.17778884462151395, 0.19073705179282868, 0.2250996015936255, 0.38197211155378485, 0.8794820717131474], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PGPGW.gap.json b/pfam_gap_rates/PGPGW.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..adaab4dd83189236caa4a16c469f1a8b4495a7e5
--- /dev/null
+++ b/pfam_gap_rates/PGPGW.gap.json
@@ -0,0 +1 @@
+{"family": "PGPGW", "n_seqs": 253, "length": 54, "gap_rates": [0.4031620553359684, 0.3438735177865613, 0.308300395256917, 0.28063241106719367, 0.15019762845849802, 0.05138339920948617, 0.023715415019762844, 0.015810276679841896, 0.007905138339920948, 0.003952569169960474, 0.003952569169960474, 0.003952569169960474, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.03162055335968379, 0.003952569169960474, 0.0, 0.0, 0.0, 0.924901185770751, 0.015810276679841896, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.003952569169960474, 0.039525691699604744, 0.07905138339920949, 0.1422924901185771, 0.15810276679841898, 0.18181818181818182, 0.18972332015810275, 0.1976284584980237, 0.2015810276679842, 0.20553359683794467, 0.2134387351778656, 0.2134387351778656, 0.21739130434782608, 0.21739130434782608, 0.22134387351778656, 0.23715415019762845, 0.2924901185770751, 0.3715415019762846, 0.525691699604743, 0.766798418972332], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PH.gap.json b/pfam_gap_rates/PH.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..64f2a0c44c5f0fc4015d10b074b5b26a1e6c441e
--- /dev/null
+++ b/pfam_gap_rates/PH.gap.json
@@ -0,0 +1 @@
+{"family": "PH", "n_seqs": 5000, "length": 148, "gap_rates": [0.8968, 0.5236, 0.2856, 0.2044, 0.1676, 0.161, 0.1512, 0.1436, 0.1322, 0.1324, 0.1264, 0.1194, 0.1178, 0.1474, 0.1974, 0.5708, 0.7794, 0.8662, 0.9334, 0.9486, 0.908, 0.8222, 0.7104, 0.0434, 0.0336, 0.0256, 0.0242, 0.0182, 0.017, 0.016, 0.0156, 0.0156, 0.0152, 0.0368, 0.0148, 0.012, 0.8562, 0.9442, 0.9252, 0.8034, 0.0106, 0.012, 0.0114, 0.0104, 0.0098, 0.0102, 0.009, 0.8356, 0.8886, 0.9218, 0.9382, 0.9074, 0.8692, 0.7702, 0.6852, 0.582, 0.4888, 0.1174, 0.0284, 0.02, 0.014, 0.0118, 0.0098, 0.0088, 0.0098, 0.008, 0.0078, 0.0084, 0.0092, 0.0084, 0.0084, 0.009, 0.009, 0.0154, 0.058, 0.2174, 0.4744, 0.5952, 0.7466, 0.8356, 0.8892, 0.9142, 0.9346, 0.9472, 0.941, 0.926, 0.9038, 0.8646, 0.7846, 0.6894, 0.2866, 0.2248, 0.9116, 0.0442, 0.031, 0.0248, 0.0204, 0.0208, 0.0204, 0.0202, 0.0202, 0.0194, 0.0162, 0.9036, 0.9098, 0.9234, 0.9348, 0.9422, 0.9458, 0.9392, 0.929, 0.9194, 0.9062, 0.9012, 0.058, 0.0734, 0.068, 0.677, 0.6748, 0.3854, 0.3868, 0.937, 0.8948, 0.3418, 0.0284, 0.0276, 0.0276, 0.0278, 0.0288, 0.0294, 0.03, 0.031, 0.0328, 0.0336, 0.0346, 0.0372, 0.0384, 0.0408, 0.0426, 0.0428, 0.0436, 0.0518, 0.0586, 0.0658, 0.1294, 0.2018, 0.3064, 0.5442], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PHBC_N.gap.json b/pfam_gap_rates/PHBC_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c034eeb2e6d3f2f6f21b77311c9e78d17d19ebdc
--- /dev/null
+++ b/pfam_gap_rates/PHBC_N.gap.json
@@ -0,0 +1 @@
+{"family": "PHBC_N", "n_seqs": 129, "length": 42, "gap_rates": [0.6744186046511628, 0.4263565891472868, 0.2248062015503876, 0.13178294573643412, 0.08527131782945736, 0.07751937984496124, 0.06201550387596899, 0.031007751937984496, 0.031007751937984496, 0.015503875968992248, 0.015503875968992248, 0.015503875968992248, 0.015503875968992248, 0.015503875968992248, 0.015503875968992248, 0.0, 0.0, 0.0, 0.007751937984496124, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.015503875968992248, 0.11627906976744186], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PHD_2.gap.json b/pfam_gap_rates/PHD_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..dc2dfdd295b8a15ce95e499dc9dd46007d157796
--- /dev/null
+++ b/pfam_gap_rates/PHD_2.gap.json
@@ -0,0 +1 @@
+{"family": "PHD_2", "n_seqs": 993, "length": 39, "gap_rates": [0.8197381671701913, 0.11782477341389729, 0.08358509566968782, 0.03423967774420947, 0.011077542799597181, 0.004028197381671702, 0.002014098690835851, 0.0010070493454179255, 0.9224572004028198, 0.9214501510574018, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0010070493454179255, 0.0010070493454179255, 0.0030211480362537764, 0.008056394763343404, 0.6727089627391742, 0.02014098690835851, 0.9224572004028198, 0.008056394763343404, 0.008056394763343404, 0.008056394763343404, 0.008056394763343404, 0.00906344410876133, 0.011077542799597181, 0.5035246727089627], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PHTB1_C.gap.json b/pfam_gap_rates/PHTB1_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d67550b640e5eb500068b71bfd67ab4380a13898
--- /dev/null
+++ b/pfam_gap_rates/PHTB1_C.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/PH_10.gap.json b/pfam_gap_rates/PH_10.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..577cfe4f60bff0fc5e9b45e7805fa8cea623afb9
--- /dev/null
+++ b/pfam_gap_rates/PH_10.gap.json
@@ -0,0 +1 @@
+{"family": "PH_10", "n_seqs": 256, "length": 157, "gap_rates": [0.76953125, 0.1171875, 0.0390625, 0.03515625, 0.03515625, 0.03515625, 0.03515625, 0.03515625, 0.03515625, 0.03515625, 0.03515625, 0.03515625, 0.03515625, 0.03515625, 0.03515625, 0.03515625, 0.40234375, 0.8671875, 0.94921875, 0.89453125, 0.69921875, 0.0390625, 0.03515625, 0.03125, 0.03125, 0.03125, 0.02734375, 0.02734375, 0.03125, 0.03125, 0.03125, 0.03125, 0.03125, 0.03125, 0.02734375, 0.02734375, 0.02734375, 0.02734375, 0.02734375, 0.02734375, 0.0234375, 0.02734375, 0.3203125, 0.3671875, 0.421875, 0.4375, 0.8125, 0.88671875, 0.94921875, 0.93359375, 0.83984375, 0.78125, 0.54296875, 0.13671875, 0.109375, 0.0703125, 0.09375, 0.3359375, 0.27734375, 0.2109375, 0.14453125, 0.09375, 0.1171875, 0.109375, 0.1328125, 0.23046875, 0.296875, 0.3125, 0.30859375, 0.3046875, 0.22265625, 0.69140625, 0.7265625, 0.78125, 0.8203125, 0.8828125, 0.92578125, 0.94140625, 0.94140625, 0.91015625, 0.8515625, 0.79296875, 0.76171875, 0.7109375, 0.6796875, 0.10546875, 0.0234375, 0.01953125, 0.01953125, 0.01953125, 0.01953125, 0.01953125, 0.01953125, 0.01953125, 0.01953125, 0.01953125, 0.01953125, 0.01953125, 0.01953125, 0.015625, 0.015625, 0.75, 0.015625, 0.015625, 0.015625, 0.015625, 0.015625, 0.015625, 0.84765625, 0.875, 0.89453125, 0.91015625, 0.91015625, 0.87890625, 0.86328125, 0.7890625, 0.09765625, 0.18359375, 0.1328125, 0.0390625, 0.01953125, 0.01953125, 0.0234375, 0.0234375, 0.0234375, 0.0234375, 0.0234375, 0.0234375, 0.0234375, 0.01953125, 0.015625, 0.46484375, 0.2734375, 0.0234375, 0.01953125, 0.73046875, 0.015625, 0.015625, 0.015625, 0.015625, 0.015625, 0.015625, 0.015625, 0.015625, 0.015625, 0.015625, 0.015625, 0.015625, 0.015625, 0.015625, 0.015625, 0.015625, 0.015625, 0.0234375, 0.03515625, 0.1640625, 0.2734375], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PI31_Prot_C.gap.json b/pfam_gap_rates/PI31_Prot_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..bac4d34055b17f10c33714776041c13feb08765c
--- /dev/null
+++ b/pfam_gap_rates/PI31_Prot_C.gap.json
@@ -0,0 +1 @@
+{"family": "PI31_Prot_C", "n_seqs": 188, "length": 107, "gap_rates": [0.2925531914893617, 0.21808510638297873, 0.2074468085106383, 0.18085106382978725, 0.16489361702127658, 0.16489361702127658, 0.30319148936170215, 0.2872340425531915, 0.2925531914893617, 0.30851063829787234, 0.2925531914893617, 0.2872340425531915, 0.3191489361702128, 0.26595744680851063, 0.776595744680851, 0.8882978723404256, 0.9095744680851063, 0.9148936170212766, 0.9095744680851063, 0.8404255319148937, 0.7446808510638298, 0.05851063829787234, 0.0425531914893617, 0.26595744680851063, 0.24468085106382978, 0.7287234042553191, 0.8457446808510638, 0.925531914893617, 0.9148936170212766, 0.7606382978723404, 0.6117021276595744, 0.2978723404255319, 0.3776595744680851, 0.3723404255319149, 0.3404255319148936, 0.35638297872340424, 0.39893617021276595, 0.40425531914893614, 0.851063829787234, 0.9361702127659575, 0.9202127659574468, 0.7712765957446809, 0.3351063829787234, 0.24468085106382978, 0.2925531914893617, 0.16489361702127658, 0.0797872340425532, 0.03723404255319149, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.005319148936170213, 0.005319148936170213, 0.0425531914893617, 0.015957446808510637, 0.005319148936170213, 0.8882978723404256, 0.9095744680851063, 0.9308510638297872, 0.9308510638297872, 0.925531914893617, 0.9042553191489362, 0.8829787234042553, 0.43617021276595747, 0.48936170212765956, 0.44148936170212766, 0.3776595744680851, 0.11170212765957446, 0.05319148936170213, 0.03723404255319149, 0.17553191489361702, 0.11702127659574468, 0.0797872340425532, 0.06382978723404255, 0.14893617021276595, 0.3617021276595745, 0.28191489361702127, 0.28191489361702127, 0.4787234042553192, 0.9042553191489362, 0.9308510638297872, 0.8085106382978723, 0.4574468085106383, 0.09574468085106383, 0.06382978723404255, 0.047872340425531915, 0.5585106382978723, 0.015957446808510637, 0.010638297872340425, 0.005319148936170213, 0.0, 0.0, 0.0, 0.005319148936170213, 0.005319148936170213, 0.010638297872340425, 0.898936170212766, 0.010638297872340425, 0.02127659574468085, 0.03723404255319149, 0.09042553191489362], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PIEZO.gap.json b/pfam_gap_rates/PIEZO.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..5759ab6425453be589b32022e73687aec00ec427
--- /dev/null
+++ b/pfam_gap_rates/PIEZO.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/PIG-P.gap.json b/pfam_gap_rates/PIG-P.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..85f469ec7efb6f843ac367c072192a8f645b9be1
--- /dev/null
+++ b/pfam_gap_rates/PIG-P.gap.json
@@ -0,0 +1 @@
+{"family": "PIG-P", "n_seqs": 269, "length": 207, "gap_rates": [0.7657992565055762, 0.29739776951672864, 0.09665427509293681, 0.08550185873605948, 0.06319702602230483, 0.05947955390334572, 0.05947955390334572, 0.05204460966542751, 0.05204460966542751, 0.05204460966542751, 0.05204460966542751, 0.05204460966542751, 0.05204460966542751, 0.04460966542750929, 0.03717472118959108, 0.03345724907063197, 0.026022304832713755, 0.022304832713754646, 0.022304832713754646, 0.011152416356877323, 0.011152416356877323, 0.011152416356877323, 0.011152416356877323, 0.011152416356877323, 0.011152416356877323, 0.011152416356877323, 0.011152416356877323, 0.011152416356877323, 0.011152416356877323, 0.01486988847583643, 0.01486988847583643, 0.01858736059479554, 0.01858736059479554, 0.01858736059479554, 0.03345724907063197, 0.01486988847583643, 0.01858736059479554, 0.011152416356877323, 0.011152416356877323, 0.011152416356877323, 0.007434944237918215, 0.022304832713754646, 0.026022304832713755, 0.02973977695167286, 0.02973977695167286, 0.03717472118959108, 0.03345724907063197, 0.03717472118959108, 0.03717472118959108, 0.03717472118959108, 0.03717472118959108, 0.03717472118959108, 0.03717472118959108, 0.9219330855018587, 0.03345724907063197, 0.03345724907063197, 0.03345724907063197, 0.03345724907063197, 0.03345724907063197, 0.03345724907063197, 0.03345724907063197, 0.03345724907063197, 0.03345724907063197, 0.03345724907063197, 0.03345724907063197, 0.03345724907063197, 0.03345724907063197, 0.03345724907063197, 0.03717472118959108, 0.7026022304832714, 0.055762081784386616, 0.055762081784386616, 0.06319702602230483, 0.06319702602230483, 0.07434944237918216, 0.08178438661710037, 0.08178438661710037, 0.08178438661710037, 0.08178438661710037, 0.08178438661710037, 0.08550185873605948, 0.09293680297397769, 0.10037174721189591, 0.11524163568773234, 0.11524163568773234, 0.11895910780669144, 0.12639405204460966, 0.828996282527881, 0.828996282527881, 0.828996282527881, 0.828996282527881, 0.8401486988847584, 0.8401486988847584, 0.8401486988847584, 0.8475836431226765, 0.862453531598513, 0.8698884758364313, 0.8698884758364313, 0.8773234200743495, 0.8810408921933085, 0.8847583643122676, 0.8921933085501859, 0.895910780669145, 0.895910780669145, 0.8996282527881041, 0.9070631970260223, 0.9182156133828996, 0.9219330855018587, 0.929368029739777, 0.929368029739777, 0.9368029739776952, 0.9442379182156134, 0.9442379182156134, 0.9442379182156134, 0.9442379182156134, 0.9479553903345725, 0.9479553903345725, 0.9479553903345725, 0.9442379182156134, 0.9442379182156134, 0.9442379182156134, 0.9442379182156134, 0.9368029739776952, 0.9330855018587361, 0.929368029739777, 0.9219330855018587, 0.9182156133828996, 0.9107806691449815, 0.9033457249070632, 0.8996282527881041, 0.895910780669145, 0.895910780669145, 0.8884758364312267, 0.8847583643122676, 0.8773234200743495, 0.8698884758364313, 0.8698884758364313, 0.8661710037174721, 0.8550185873605948, 0.8438661710037175, 0.8401486988847584, 0.8401486988847584, 0.828996282527881, 0.828996282527881, 0.828996282527881, 0.828996282527881, 0.828996282527881, 0.1412639405204461, 0.550185873605948, 0.6728624535315985, 0.7174721189591078, 0.7509293680297398, 0.7992565055762082, 0.828996282527881, 0.8401486988847584, 0.8513011152416357, 0.8810408921933085, 0.8884758364312267, 0.9256505576208178, 0.9330855018587361, 0.9368029739776952, 0.9442379182156134, 0.9330855018587361, 0.9330855018587361, 0.9256505576208178, 0.8847583643122676, 0.862453531598513, 0.8438661710037175, 0.8364312267657993, 0.8104089219330854, 0.7955390334572491, 0.7360594795539034, 0.6951672862453532, 0.6319702602230484, 0.4684014869888476, 0.4052044609665427, 0.3828996282527881, 0.35687732342007433, 0.31226765799256506, 0.22676579925650558, 0.20074349442379183, 0.17843866171003717, 0.17100371747211895, 0.16728624535315986, 0.16356877323420074, 0.15985130111524162, 0.15985130111524162, 0.15985130111524162, 0.15985130111524162, 0.15985130111524162, 0.15985130111524162, 0.15985130111524162, 0.15985130111524162, 0.15985130111524162, 0.15985130111524162, 0.15985130111524162, 0.15985130111524162, 0.15985130111524162, 0.16356877323420074, 0.16356877323420074, 0.16728624535315986, 0.17472118959107807, 0.17843866171003717, 0.17843866171003717, 0.18587360594795538, 0.20446096654275092, 0.23048327137546468], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PIN_4.gap.json b/pfam_gap_rates/PIN_4.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..5335a876a691573d361e509e738f8b0b817898ed
--- /dev/null
+++ b/pfam_gap_rates/PIN_4.gap.json
@@ -0,0 +1 @@
+{"family": "PIN_4", "n_seqs": 1630, "length": 214, "gap_rates": [0.2441717791411043, 0.11411042944785275, 0.04294478527607362, 0.041104294478527606, 0.041104294478527606, 0.0392638036809816, 0.03803680981595092, 0.03496932515337423, 0.03374233128834356, 0.03374233128834356, 0.033128834355828224, 0.03251533742331288, 0.06134969325153374, 0.046012269938650305, 0.033128834355828224, 0.03128834355828221, 0.0343558282208589, 0.03251533742331288, 0.7092024539877301, 0.8613496932515338, 0.9134969325153375, 0.9245398773006135, 0.8834355828220859, 0.8386503067484663, 0.6840490797546013, 0.5754601226993865, 0.026993865030674847, 0.024539877300613498, 0.023312883435582823, 0.023312883435582823, 0.022085889570552148, 0.020245398773006136, 0.020245398773006136, 0.020245398773006136, 0.018404907975460124, 0.015337423312883436, 0.01411042944785276, 0.013496932515337423, 0.012883435582822086, 0.012883435582822086, 0.012883435582822086, 0.02822085889570552, 0.027607361963190184, 0.025153374233128835, 0.015337423312883436, 0.015337423312883436, 0.01411042944785276, 0.01411042944785276, 0.11288343558282209, 0.7920245398773006, 0.8920245398773006, 0.9116564417177914, 0.9257668711656442, 0.9319018404907975, 0.947239263803681, 0.9276073619631902, 0.9196319018404908, 0.903680981595092, 0.8840490797546012, 0.6116564417177914, 0.10920245398773006, 0.05705521472392638, 0.05644171779141104, 0.05337423312883435, 0.022085889570552148, 0.02638036809815951, 0.022699386503067485, 0.02147239263803681, 0.0196319018404908, 0.01901840490797546, 0.01901840490797546, 0.02147239263803681, 0.020245398773006136, 0.04049079754601227, 0.03067484662576687, 0.03128834355828221, 0.033128834355828224, 0.03496932515337423, 0.05766871165644172, 0.07730061349693251, 0.5521472392638037, 0.5760736196319018, 0.5858895705521472, 0.5993865030674846, 0.6141104294478528, 0.7319018404907975, 0.8411042944785276, 0.8828220858895706, 0.901840490797546, 0.9374233128834356, 0.8865030674846626, 0.8773006134969326, 0.8134969325153374, 0.698159509202454, 0.6042944785276073, 0.5883435582822086, 0.5828220858895705, 0.5607361963190184, 0.5411042944785276, 0.04723926380368098, 0.10184049079754601, 0.09815950920245399, 0.09386503067484663, 0.10184049079754601, 0.0950920245398773, 0.07730061349693251, 0.07975460122699386, 0.051533742331288344, 0.7503067484662577, 0.8687116564417178, 0.8877300613496932, 0.9006134969325154, 0.9257668711656442, 0.9361963190184049, 0.9134969325153375, 0.8932515337423312, 0.8773006134969326, 0.838036809815951, 0.7325153374233129, 0.053987730061349694, 0.11288343558282209, 0.1049079754601227, 0.10552147239263804, 0.10797546012269939, 0.14049079754601226, 0.3355828220858896, 0.6257668711656442, 0.2822085889570552, 0.7085889570552147, 0.7515337423312883, 0.7742331288343558, 0.8668711656441718, 0.8969325153374234, 0.9134969325153375, 0.9331288343558283, 0.947239263803681, 0.9496932515337423, 0.9404907975460123, 0.9233128834355828, 0.9042944785276074, 0.8815950920245399, 0.8282208588957055, 0.7613496932515338, 0.743558282208589, 0.701840490797546, 0.4656441717791411, 0.24478527607361963, 0.9141104294478528, 0.8865030674846626, 0.26380368098159507, 0.22576687116564417, 0.05644171779141104, 0.05644171779141104, 0.05644171779141104, 0.05766871165644172, 0.05950920245398773, 0.05889570552147239, 0.06134969325153374, 0.06257668711656442, 0.06257668711656442, 0.06319018404907975, 0.06503067484662577, 0.06809815950920245, 0.0687116564417178, 0.07239263803680981, 0.07300613496932515, 0.07668711656441718, 0.08895705521472393, 0.37791411042944784, 0.7, 0.7392638036809815, 0.811042944785276, 0.854601226993865, 0.8742331288343558, 0.896319018404908, 0.9208588957055215, 0.9429447852760736, 0.9478527607361963, 0.9386503067484663, 0.9085889570552147, 0.8834355828220859, 0.8625766871165644, 0.8411042944785276, 0.801840490797546, 0.7269938650306749, 0.6570552147239264, 0.30920245398773005, 0.1423312883435583, 0.12883435582822086, 0.12024539877300613, 0.1147239263803681, 0.10736196319018405, 0.0785276073619632, 0.0785276073619632, 0.08098159509202454, 0.08098159509202454, 0.08282208588957055, 0.08282208588957055, 0.08404907975460123, 0.0852760736196319, 0.08895705521472393, 0.09079754601226994, 0.09141104294478528, 0.09263803680981596, 0.09815950920245399, 0.10184049079754601, 0.10613496932515337, 0.10797546012269939, 0.11288343558282209, 0.12822085889570553, 0.2067484662576687, 0.3085889570552147, 0.4723926380368098, 0.7901840490797546], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PKD.gap.json b/pfam_gap_rates/PKD.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..cf8dd83c9e7fb96873e90d1b2dd20c26d421f182
--- /dev/null
+++ b/pfam_gap_rates/PKD.gap.json
@@ -0,0 +1 @@
+{"family": "PKD", "n_seqs": 3384, "length": 77, "gap_rates": [0.9051418439716312, 0.8463356973995272, 0.8046690307328606, 0.7112884160756501, 0.6521867612293144, 0.5972222222222222, 0.5354609929078015, 0.47310874704491723, 0.4178486997635934, 0.3723404255319149, 0.3034869976359338, 0.2375886524822695, 0.18912529550827423, 0.17139479905437352, 0.1524822695035461, 0.14509456264775414, 0.13770685579196218, 0.13002364066193853, 0.1182033096926714, 0.6356382978723404, 0.774822695035461, 0.5452127659574468, 0.36347517730496454, 0.1388888888888889, 0.0644208037825059, 0.04728132387706856, 0.040484633569739956, 0.03664302600472813, 0.016252955082742316, 0.008865248226950355, 0.002955082742316785, 0.002364066193853428, 0.001182033096926714, 0.001182033096926714, 0.0008865248226950354, 0.000591016548463357, 0.7440898345153665, 0.9101654846335697, 0.9385342789598109, 0.9302600472813238, 0.8770685579196218, 0.6111111111111112, 0.5487588652482269, 0.015366430260047281, 0.008274231678486997, 0.009456264775413711, 0.0067966903073286055, 0.005319148936170213, 0.0026595744680851063, 0.004137115839243499, 0.00591016548463357, 0.004728132387706856, 0.002364066193853428, 0.0002955082742316785, 0.0002955082742316785, 0.0002955082742316785, 0.002364066193853428, 0.0062056737588652485, 0.0014775413711583924, 0.000591016548463357, 0.001182033096926714, 0.001182033096926714, 0.0017730496453900709, 0.0020685579196217494, 0.004728132387706856, 0.008865248226950355, 0.022754137115839245, 0.04373522458628842, 0.07505910165484633, 0.12677304964539007, 0.1566193853427896, 0.22606382978723405, 0.26832151300236406, 0.4039598108747045, 0.5366430260047281, 0.6917848699763594, 0.9281914893617021], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PK_C.gap.json b/pfam_gap_rates/PK_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..153bb051e01a22b39bc7bf856f625e1e44a6e078
--- /dev/null
+++ b/pfam_gap_rates/PK_C.gap.json
@@ -0,0 +1 @@
+{"family": "PK_C", "n_seqs": 3095, "length": 136, "gap_rates": [0.4316639741518578, 0.20678513731825526, 0.08917609046849757, 0.06558966074313409, 0.05234248788368336, 0.04555735056542811, 0.041033925686591276, 0.037802907915993535, 0.03521809369951535, 0.029079159935379646, 0.028432956381260095, 0.028109854604200322, 0.026817447495961228, 0.026494345718901455, 0.025201938610662358, 0.021647819063004847, 0.022294022617124393, 0.030694668820678513, 0.014216478190630048, 0.012277867528271405, 0.011631663974151859, 0.011631663974151859, 0.011308562197092083, 0.011631663974151859, 0.010662358642972537, 0.010339256865912763, 0.010662358642972537, 0.010016155088852988, 0.010016155088852988, 0.010016155088852988, 0.009693053311793215, 0.009693053311793215, 0.009693053311793215, 0.009693053311793215, 0.011308562197092083, 0.012600969305331179, 0.012600969305331179, 0.012924071082390954, 0.012277867528271405, 0.009046849757673668, 0.00840064620355412, 0.00840064620355412, 0.008723747980613893, 0.008723747980613893, 0.00840064620355412, 0.009046849757673668, 0.009369951534733441, 0.035864297253634894, 0.035864297253634894, 0.010016155088852988, 0.9092084006462036, 0.9095315024232633, 0.9101777059773829, 0.9111470113085622, 0.9134087237479807, 0.9147011308562197, 0.9153473344103392, 0.9143780290791599, 0.9130856219709208, 0.9105008077544426, 0.909854604200323, 0.9095315024232633, 0.9088852988691438, 0.009693053311793215, 0.010662358642972537, 0.011308562197092083, 0.009693053311793215, 0.009693053311793215, 0.010016155088852988, 0.010016155088852988, 0.011631663974151859, 0.011954765751211632, 0.010662358642972537, 0.010662358642972537, 0.010339256865912763, 0.010662358642972537, 0.012277867528271405, 0.05815831987075929, 0.028109854604200322, 0.08594507269789983, 0.6255250403877222, 0.7418416801292407, 0.6995153473344103, 0.8284329563812601, 0.9192245557350566, 0.9492730210016155, 0.9444264943457189, 0.8348949919224555, 0.8235864297253634, 0.11082390953150242, 0.06978998384491114, 0.04878836833602585, 0.041033925686591276, 0.026494345718901455, 0.031987075928917606, 0.04458804523424879, 0.026494345718901455, 0.023263327948303717, 0.022294022617124393, 0.020355411954765753, 0.021324717285945073, 0.022294022617124393, 0.022294022617124393, 0.021647819063004847, 0.021647819063004847, 0.022294022617124393, 0.023909531502423264, 0.02358642972536349, 0.030694668820678513, 0.03037156704361874, 0.02617124394184168, 0.024878836833602584, 0.02617124394184168, 0.02552504038772213, 0.025201938610662358, 0.026494345718901455, 0.028109854604200322, 0.028756058158319872, 0.029725363489499192, 0.031987075928917606, 0.03715670436187399, 0.06009693053311793, 0.12051696284329563, 0.15121163166397414, 0.16833602584814217, 0.3854604200323102, 0.23683360258481423, 0.21130856219709207, 0.19450726978998384, 0.15315024232633279, 0.1583198707592892, 0.16348949919224556, 0.1680129240710824, 0.18610662358642974, 0.23134087237479806, 0.5418416801292407], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PL48.gap.json b/pfam_gap_rates/PL48.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f184ce5cd50784b0474d8361580156259ff0e2c0
--- /dev/null
+++ b/pfam_gap_rates/PL48.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/PLDc_N.gap.json b/pfam_gap_rates/PLDc_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..122c4062b7923e90fd1339bf02e2e43c422aeff4
--- /dev/null
+++ b/pfam_gap_rates/PLDc_N.gap.json
@@ -0,0 +1 @@
+{"family": "PLDc_N", "n_seqs": 1964, "length": 50, "gap_rates": [0.6257637474541752, 0.36761710794297353, 0.2668024439918534, 0.14663951120162932, 0.10081466395112017, 0.06720977596741344, 0.05142566191446028, 0.03767820773930754, 0.028513238289205704, 0.019348268839103868, 0.014765784114052953, 0.017311608961303463, 0.6914460285132383, 0.1094704684317719, 0.865071283095723, 0.945010183299389, 0.2774949083503055, 0.013238289205702648, 0.014765784114052953, 0.012729124236252547, 0.015784114052953158, 0.003054989816700611, 0.7958248472505092, 0.9389002036659878, 0.870162932790224, 0.7632382892057027, 0.0005091649694501018, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.004582484725050916, 0.031568228105906315, 0.0, 0.0, 0.006109979633401222, 0.0, 0.0, 0.0005091649694501018, 0.0010183299389002036, 0.0010183299389002036, 0.0025458248472505093, 0.004073319755600814, 0.017311608961303463, 0.04531568228105906, 0.12169042769857434, 0.5697556008146639], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PMSR.gap.json b/pfam_gap_rates/PMSR.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..4b2b7675d31d0439ddf5ab9edfbc514ed863f0d1
--- /dev/null
+++ b/pfam_gap_rates/PMSR.gap.json
@@ -0,0 +1 @@
+{"family": "PMSR", "n_seqs": 2483, "length": 159, "gap_rates": [0.5686669351590817, 0.1103503826016915, 0.07007652033830045, 0.06282722513089005, 0.06202174788562223, 0.060008054772452676, 0.05960531614981877, 0.05960531614981877, 0.05477245267821184, 0.05477245267821184, 0.05396697543294402, 0.05557792992347966, 0.05074506645187273, 0.04671768022553363, 0.045509464357631896, 0.04470398711236408, 0.04671768022553363, 0.04470398711236408, 0.041884816753926704, 0.04309303262182843, 0.9307289569069673, 0.9432138542086186, 0.923479661699557, 0.04027386226339106, 0.041884816753926704, 0.037857430527587596, 0.03745469190495369, 0.037857430527587596, 0.03705195328231978, 0.037857430527587596, 0.03705195328231978, 0.037857430527587596, 0.038260169150221505, 0.038260169150221505, 0.038260169150221505, 0.03946838501812324, 0.03987112364075715, 0.03946838501812324, 0.03946838501812324, 0.048731373338703185, 0.05114780507450665, 0.05396697543294402, 0.053161498187676196, 0.05356423681031011, 0.04993958920660491, 0.1602899718082964, 0.16230366492146597, 0.14136125654450263, 0.1550543697140556, 0.04430124848973017, 0.03503826016915022, 0.031816351188078934, 0.030608135320177206, 0.030205396697543293, 0.029802658074909383, 0.02899718082964156, 0.028594442207007652, 0.028191703584373742, 0.028191703584373742, 0.028594442207007652, 0.02899718082964156, 0.030205396697543293, 0.029399919452275474, 0.029802658074909383, 0.029399919452275474, 0.030205396697543293, 0.031816351188078934, 0.029802658074909383, 0.028594442207007652, 0.02899718082964156, 0.028191703584373742, 0.028191703584373742, 0.028191703584373742, 0.02738622633910592, 0.02778896496173983, 0.02778896496173983, 0.02778896496173983, 0.02899718082964156, 0.02899718082964156, 0.03302456705598067, 0.0342327829238824, 0.03503826016915022, 0.042287555376560614, 0.045106725734997986, 0.05799436165928312, 0.07168747482883608, 0.07168747482883608, 0.06806282722513089, 0.05879983890455095, 0.04470398711236408, 0.03705195328231978, 0.02899718082964156, 0.026580749093838098, 0.02577527184857028, 0.02577527184857028, 0.02617801047120419, 0.025372533225936366, 0.02617801047120419, 0.026580749093838098, 0.02617801047120419, 0.028191703584373742, 0.028191703584373742, 0.026580749093838098, 0.02617801047120419, 0.02617801047120419, 0.02617801047120419, 0.02698348771647201, 0.02617801047120419, 0.02577527184857028, 0.02577527184857028, 0.02577527184857028, 0.02577527184857028, 0.026580749093838098, 0.02617801047120419, 0.026580749093838098, 0.02577527184857028, 0.02577527184857028, 0.024969794603302457, 0.02617801047120419, 0.7849375755134917, 0.7752718485702779, 0.41361256544502617, 0.34554973821989526, 0.08699154248892468, 0.04430124848973017, 0.03383004430124849, 0.03221908981071285, 0.030608135320177206, 0.029399919452275474, 0.02899718082964156, 0.029399919452275474, 0.029399919452275474, 0.02899718082964156, 0.030205396697543293, 0.03221908981071285, 0.031010873942811115, 0.031010873942811115, 0.031010873942811115, 0.031010873942811115, 0.031010873942811115, 0.031010873942811115, 0.031816351188078934, 0.03302456705598067, 0.03383004430124849, 0.0342327829238824, 0.034635521546516314, 0.03503826016915022, 0.037857430527587596, 0.03987112364075715, 0.04349577124446234, 0.05235602094240838, 0.09585179218687072, 0.13169552960128877, 0.1550543697140556, 0.17760773258155457, 0.7853403141361257, 0.19653644784534838, 0.2686266612968184, 0.7623842126459928], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/POX.gap.json b/pfam_gap_rates/POX.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e2e052e55f990c166d65346823f7ba1767913c6d
--- /dev/null
+++ b/pfam_gap_rates/POX.gap.json
@@ -0,0 +1 @@
+{"family": "POX", "n_seqs": 347, "length": 162, "gap_rates": [0.5619596541786743, 0.14697406340057637, 0.11815561959654179, 0.10086455331412104, 0.09221902017291066, 0.08645533141210375, 0.08357348703170028, 0.07780979827089338, 0.07492795389048991, 0.07492795389048991, 0.07492795389048991, 0.07492795389048991, 0.07204610951008646, 0.07204610951008646, 0.07204610951008646, 0.07204610951008646, 0.07492795389048991, 0.07204610951008646, 0.07204610951008646, 0.07204610951008646, 0.07204610951008646, 0.08069164265129683, 0.9077809798270894, 0.42363112391930835, 0.622478386167147, 0.723342939481268, 0.8184438040345822, 0.8587896253602305, 0.9164265129682997, 0.9394812680115274, 0.8818443804034583, 0.8443804034582133, 0.7665706051873199, 0.6772334293948127, 0.6080691642651297, 0.2968299711815562, 0.4409221902017291, 0.33429394812680113, 0.28530259365994237, 0.24495677233429394, 0.1930835734870317, 0.1786743515850144, 0.1729106628242075, 0.14985590778097982, 0.14697406340057637, 0.31988472622478387, 0.31412103746397696, 0.28530259365994237, 0.2824207492795389, 0.2334293948126801, 0.21613832853025935, 0.19020172910662825, 0.15561959654178675, 0.14985590778097982, 0.14121037463976946, 0.16714697406340057, 0.14121037463976946, 0.1239193083573487, 0.11815561959654179, 0.11815561959654179, 0.12968299711815562, 0.13256484149855907, 0.14121037463976946, 0.1642651296829971, 0.1585014409221902, 0.19020172910662825, 0.3256484149855908, 0.3804034582132565, 0.40634005763688763, 0.4207492795389049, 0.38904899135446686, 0.1786743515850144, 0.69164265129683, 0.7492795389048992, 0.8242074927953891, 0.8731988472622478, 0.8904899135446686, 0.9337175792507204, 0.9481268011527377, 0.9423631123919308, 0.9106628242074928, 0.8789625360230547, 0.8501440922190202, 0.792507204610951, 0.7118155619596542, 0.6628242074927954, 0.10662824207492795, 0.08645533141210375, 0.07780979827089338, 0.06340057636887608, 0.0893371757925072, 0.05475504322766571, 0.05763688760806916, 0.04899135446685879, 0.04899135446685879, 0.04899135446685879, 0.04610951008645533, 0.04610951008645533, 0.04610951008645533, 0.043227665706051875, 0.040345821325648415, 0.040345821325648415, 0.04899135446685879, 0.05187319884726225, 0.05187319884726225, 0.05475504322766571, 0.05187319884726225, 0.04899135446685879, 0.04899135446685879, 0.04899135446685879, 0.040345821325648415, 0.040345821325648415, 0.040345821325648415, 0.040345821325648415, 0.037463976945244955, 0.037463976945244955, 0.03170028818443804, 0.03170028818443804, 0.03170028818443804, 0.03170028818443804, 0.03170028818443804, 0.040345821325648415, 0.025936599423631124, 0.025936599423631124, 0.023054755043227664, 0.023054755043227664, 0.023054755043227664, 0.023054755043227664, 0.023054755043227664, 0.023054755043227664, 0.023054755043227664, 0.023054755043227664, 0.023054755043227664, 0.023054755043227664, 0.02881844380403458, 0.025936599423631124, 0.025936599423631124, 0.069164265129683, 0.025936599423631124, 0.02881844380403458, 0.02881844380403458, 0.02881844380403458, 0.02881844380403458, 0.02881844380403458, 0.02881844380403458, 0.02881844380403458, 0.02881844380403458, 0.02881844380403458, 0.02881844380403458, 0.02881844380403458, 0.02881844380403458, 0.02881844380403458, 0.02881844380403458, 0.02881844380403458, 0.02881844380403458, 0.02881844380403458, 0.02881844380403458, 0.02881844380403458, 0.03170028818443804, 0.043227665706051875, 0.043227665706051875, 0.4783861671469741], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PPR_2.gap.json b/pfam_gap_rates/PPR_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a1238abd4eb9d1506ff30863eef7e827f49a07ce
--- /dev/null
+++ b/pfam_gap_rates/PPR_2.gap.json
@@ -0,0 +1 @@
+{"family": "PPR_2", "n_seqs": 5000, "length": 50, "gap_rates": [0.4742, 0.1722, 0.13, 0.0916, 0.0438, 0.0278, 0.0244, 0.0138, 0.008, 0.0052, 0.005, 0.0032, 0.0024, 0.0022, 0.0036, 0.0022, 0.0014, 0.0014, 0.0016, 0.001, 0.0002, 0.0, 0.0, 0.0, 0.0, 0.0004, 0.0006, 0.001, 0.0014, 0.0006, 0.0066, 0.0068, 0.006, 0.0046, 0.0112, 0.0078, 0.008, 0.0086, 0.014, 0.016, 0.021, 0.0278, 0.0346, 0.0386, 0.0456, 0.0788, 0.0988, 0.1544, 0.3642, 0.6512], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PRC.gap.json b/pfam_gap_rates/PRC.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..46577b7e65cb30e7df03aec3ca3719165884f890
--- /dev/null
+++ b/pfam_gap_rates/PRC.gap.json
@@ -0,0 +1 @@
+{"family": "PRC", "n_seqs": 3678, "length": 90, "gap_rates": [0.8270799347471451, 0.5992387166938553, 0.5149537792278412, 0.3746601413811854, 0.2509516041326808, 0.16802610114192496, 0.11092985318107668, 0.06552474170744971, 0.04105492115280043, 0.03181076672104405, 0.024197933659597607, 0.020391517128874388, 0.016856987493202826, 0.013322457857531268, 0.013050570962479609, 0.012506797172376292, 0.010875475802066341, 0.023110386079390973, 0.7523110386079391, 0.031538879825992384, 0.0032626427406199023, 0.0016313213703099511, 0.0019032082653616096, 0.000543773790103317, 0.000543773790103317, 0.0008156606851549756, 0.000543773790103317, 0.000543773790103317, 0.000543773790103317, 0.37656334964654703, 0.010875475802066341, 0.009787928221859706, 0.028004350190320826, 0.1487221315932572, 0.006253398586188146, 0.0016313213703099511, 0.0019032082653616096, 0.0032626427406199023, 0.0027188689505165853, 0.00734094616639478, 0.004893964110929853, 0.005709624796084829, 0.005981511691136488, 0.005981511691136488, 0.02746057640021751, 0.08401305057096248, 0.3053289831430125, 0.3618814573137575, 0.5054377379010332, 0.5239260467645459, 0.5307232191408374, 0.7871125611745514, 0.9023926046764545, 0.9347471451876019, 0.824089178901577, 0.7525829255029908, 0.47335508428493744, 0.39369222403480153, 0.04377379010331702, 0.03507340946166395, 0.03317020119630234, 0.03317020119630234, 0.03534529635671561, 0.038879825992387165, 0.04268624252311039, 0.044861337683523655, 0.5581837955410549, 0.6120174007612833, 0.9445350734094616, 0.5905383360522023, 0.46030451332245786, 0.21723762914627515, 0.08210984230560087, 0.08727569331158239, 0.09380097879282219, 0.10331702011963023, 0.1166394779771615, 0.1258836324089179, 0.1383904295812942, 0.15252854812398042, 0.15959760739532355, 0.16829798803697663, 0.188689505165851, 0.23735725938009788, 0.3945078847199565, 0.4937466014138119, 0.5619902120717781, 0.6356715606307776, 0.7656334964654704, 0.9426318651441], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PRKG1_interact.gap.json b/pfam_gap_rates/PRKG1_interact.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..3e9598ec7e3468850d1d916036801025061262d0
--- /dev/null
+++ b/pfam_gap_rates/PRKG1_interact.gap.json
@@ -0,0 +1 @@
+{"family": "PRKG1_interact", "n_seqs": 135, "length": 116, "gap_rates": [0.3111111111111111, 0.2518518518518518, 0.23703703703703705, 0.22962962962962963, 0.2222222222222222, 0.2222222222222222, 0.2222222222222222, 0.21481481481481482, 0.21481481481481482, 0.2074074074074074, 0.2074074074074074, 0.2, 0.2, 0.2, 0.2, 0.2, 0.2, 0.2, 0.2, 0.1925925925925926, 0.1925925925925926, 0.1925925925925926, 0.1925925925925926, 0.1925925925925926, 0.1925925925925926, 0.1925925925925926, 0.17777777777777778, 0.17777777777777778, 0.17777777777777778, 0.17777777777777778, 0.17777777777777778, 0.17777777777777778, 0.1925925925925926, 0.17037037037037037, 0.16296296296296298, 0.16296296296296298, 0.16296296296296298, 0.17037037037037037, 0.48148148148148145, 0.2740740740740741, 0.9481481481481482, 0.9481481481481482, 0.9259259259259259, 0.4222222222222222, 0.45185185185185184, 0.43703703703703706, 0.8962962962962963, 0.9407407407407408, 0.9481481481481482, 0.9111111111111111, 0.8962962962962963, 0.43703703703703706, 0.34814814814814815, 0.3111111111111111, 0.26666666666666666, 0.2518518518518518, 0.23703703703703705, 0.37037037037037035, 0.23703703703703705, 0.2222222222222222, 0.21481481481481482, 0.2074074074074074, 0.2074074074074074, 0.17777777777777778, 0.16296296296296298, 0.16296296296296298, 0.17037037037037037, 0.17037037037037037, 0.17777777777777778, 0.17777777777777778, 0.17777777777777778, 0.17777777777777778, 0.17777777777777778, 0.17777777777777778, 0.18518518518518517, 0.2, 0.2, 0.17777777777777778, 0.17777777777777778, 0.15555555555555556, 0.1259259259259259, 0.9481481481481482, 0.9481481481481482, 0.9481481481481482, 0.9481481481481482, 0.9481481481481482, 0.9481481481481482, 0.08888888888888889, 0.0962962962962963, 0.0962962962962963, 0.1111111111111111, 0.1111111111111111, 0.1111111111111111, 0.1111111111111111, 0.1111111111111111, 0.1111111111111111, 0.1111111111111111, 0.1111111111111111, 0.1111111111111111, 0.1111111111111111, 0.1111111111111111, 0.1111111111111111, 0.1111111111111111, 0.1111111111111111, 0.1111111111111111, 0.1111111111111111, 0.1111111111111111, 0.11851851851851852, 0.11851851851851852, 0.13333333333333333, 0.14074074074074075, 0.14814814814814814, 0.14814814814814814, 0.14814814814814814, 0.17777777777777778, 0.32592592592592595], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PRP38.gap.json b/pfam_gap_rates/PRP38.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c55ffbf76737c63328e4a46a773a9c752f2e5b0b
--- /dev/null
+++ b/pfam_gap_rates/PRP38.gap.json
@@ -0,0 +1 @@
+{"family": "PRP38", "n_seqs": 546, "length": 196, "gap_rates": [0.8956043956043956, 0.48717948717948717, 0.3626373626373626, 0.25274725274725274, 0.18681318681318682, 0.16483516483516483, 0.14835164835164835, 0.1391941391941392, 0.12637362637362637, 0.1043956043956044, 0.10256410256410256, 0.09157509157509157, 0.09157509157509157, 0.09157509157509157, 0.08974358974358974, 0.08424908424908426, 0.08424908424908426, 0.08424908424908426, 0.08424908424908426, 0.08424908424908426, 0.08241758241758242, 0.08058608058608059, 0.07875457875457875, 0.07692307692307693, 0.07692307692307693, 0.07692307692307693, 0.07692307692307693, 0.2600732600732601, 0.07875457875457875, 0.07326007326007326, 0.07326007326007326, 0.07142857142857142, 0.07142857142857142, 0.06776556776556776, 0.06776556776556776, 0.6318681318681318, 0.06776556776556776, 0.0641025641025641, 0.0641025641025641, 0.06227106227106227, 0.06043956043956044, 0.06043956043956044, 0.05860805860805861, 0.06043956043956044, 0.054945054945054944, 0.5421245421245421, 0.06227106227106227, 0.054945054945054944, 0.056776556776556776, 0.056776556776556776, 0.056776556776556776, 0.056776556776556776, 0.63003663003663, 0.09157509157509157, 0.06593406593406594, 0.08241758241758242, 0.07875457875457875, 0.09706959706959707, 0.07326007326007326, 0.8498168498168498, 0.8498168498168498, 0.8498168498168498, 0.8498168498168498, 0.8498168498168498, 0.8498168498168498, 0.8498168498168498, 0.8516483516483516, 0.8553113553113553, 0.8516483516483516, 0.8498168498168498, 0.8498168498168498, 0.8498168498168498, 0.8498168498168498, 0.8498168498168498, 0.8498168498168498, 0.8498168498168498, 0.847985347985348, 0.12637362637362637, 0.07142857142857142, 0.06776556776556776, 0.0695970695970696, 0.06227106227106227, 0.06227106227106227, 0.06227106227106227, 0.06227106227106227, 0.06043956043956044, 0.06043956043956044, 0.06227106227106227, 0.05860805860805861, 0.05860805860805861, 0.054945054945054944, 0.056776556776556776, 0.054945054945054944, 0.054945054945054944, 0.054945054945054944, 0.056776556776556776, 0.056776556776556776, 0.05860805860805861, 0.054945054945054944, 0.056776556776556776, 0.05860805860805861, 0.056776556776556776, 0.05860805860805861, 0.056776556776556776, 0.8626373626373627, 0.9432234432234432, 0.8626373626373627, 0.06043956043956044, 0.05860805860805861, 0.05860805860805861, 0.054945054945054944, 0.056776556776556776, 0.04945054945054945, 0.04945054945054945, 0.05128205128205128, 0.05311355311355311, 0.05311355311355311, 0.054945054945054944, 0.056776556776556776, 0.056776556776556776, 0.06043956043956044, 0.05860805860805861, 0.05860805860805861, 0.05860805860805861, 0.05860805860805861, 0.05860805860805861, 0.056776556776556776, 0.056776556776556776, 0.054945054945054944, 0.054945054945054944, 0.056776556776556776, 0.05860805860805861, 0.056776556776556776, 0.05311355311355311, 0.05311355311355311, 0.05311355311355311, 0.05311355311355311, 0.05311355311355311, 0.05311355311355311, 0.056776556776556776, 0.056776556776556776, 0.056776556776556776, 0.056776556776556776, 0.3534798534798535, 0.3498168498168498, 0.3516483516483517, 0.3498168498168498, 0.3608058608058608, 0.336996336996337, 0.34065934065934067, 0.34615384615384615, 0.3516483516483517, 0.6996336996336996, 0.6978021978021978, 0.6758241758241759, 0.6721611721611722, 0.663003663003663, 0.815018315018315, 0.7307692307692307, 0.32783882783882784, 0.09706959706959707, 0.08791208791208792, 0.08608058608058608, 0.08608058608058608, 0.08608058608058608, 0.08608058608058608, 0.08608058608058608, 0.08608058608058608, 0.08791208791208792, 0.08791208791208792, 0.08791208791208792, 0.08791208791208792, 0.08608058608058608, 0.08608058608058608, 0.09157509157509157, 0.09523809523809523, 0.09523809523809523, 0.0989010989010989, 0.0989010989010989, 0.0989010989010989, 0.0989010989010989, 0.10256410256410256, 0.1043956043956044, 0.10622710622710622, 0.10805860805860806, 0.10805860805860806, 0.11904761904761904, 0.12087912087912088, 0.1227106227106227, 0.13736263736263737, 0.14835164835164835, 0.17582417582417584, 0.23992673992673993, 0.304029304029304, 0.37362637362637363, 0.6245421245421245], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PRTase_2.gap.json b/pfam_gap_rates/PRTase_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f63116de9d4952c1eeed6faedf3673e2fe432fe0
--- /dev/null
+++ b/pfam_gap_rates/PRTase_2.gap.json
@@ -0,0 +1 @@
+{"family": "PRTase_2", "n_seqs": 129, "length": 243, "gap_rates": [0.20930232558139536, 0.11627906976744186, 0.07751937984496124, 0.015503875968992248, 0.007751937984496124, 0.007751937984496124, 0.007751937984496124, 0.9302325581395349, 0.0, 0.9224806201550387, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.40310077519379844, 0.4108527131782946, 0.6821705426356589, 0.6821705426356589, 0.6821705426356589, 0.6821705426356589, 0.6821705426356589, 0.689922480620155, 0.689922480620155, 0.689922480620155, 0.689922480620155, 0.689922480620155, 0.689922480620155, 0.689922480620155, 0.7364341085271318, 0.7441860465116279, 0.7751937984496124, 0.8604651162790697, 0.8992248062015504, 0.9302325581395349, 0.937984496124031, 0.9224806201550387, 0.875968992248062, 0.8062015503875969, 0.7596899224806202, 0.7364341085271318, 0.7131782945736435, 0.689922480620155, 0.689922480620155, 0.689922480620155, 0.689922480620155, 0.689922480620155, 0.689922480620155, 0.6821705426356589, 0.6821705426356589, 0.6821705426356589, 0.6821705426356589, 0.6821705426356589, 0.6821705426356589, 0.40310077519379844, 0.3953488372093023, 0.9457364341085271, 0.8992248062015504, 0.18604651162790697, 0.031007751937984496, 0.007751937984496124, 0.0, 0.0, 0.0, 0.007751937984496124, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.875968992248062, 0.5038759689922481, 0.13953488372093023, 0.7209302325581395, 0.8062015503875969, 0.9147286821705426, 0.7209302325581395, 0.7209302325581395, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.3333333333333333, 0.031007751937984496, 0.031007751937984496, 0.023255813953488372, 0.007751937984496124, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.7596899224806202, 0.8217054263565892, 0.7751937984496124, 0.689922480620155, 0.08527131782945736, 0.023255813953488372, 0.015503875968992248, 0.007751937984496124, 0.0, 0.0, 0.015503875968992248, 0.007751937984496124, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.007751937984496124, 0.9224806201550387, 0.007751937984496124, 0.007751937984496124, 0.007751937984496124, 0.5813953488372093, 0.0, 0.007751937984496124, 0.007751937984496124, 0.007751937984496124, 0.007751937984496124, 0.007751937984496124, 0.007751937984496124, 0.007751937984496124, 0.007751937984496124, 0.007751937984496124, 0.007751937984496124, 0.007751937984496124, 0.007751937984496124, 0.015503875968992248, 0.015503875968992248, 0.2558139534883721, 0.2713178294573643, 0.2713178294573643, 0.14728682170542637, 0.15503875968992248, 0.14728682170542637, 0.15503875968992248, 0.16279069767441862, 0.17829457364341086, 0.17829457364341086, 0.1937984496124031, 0.20155038759689922, 0.20155038759689922, 0.20155038759689922, 0.21705426356589147, 0.21705426356589147, 0.21705426356589147, 0.21705426356589147, 0.21705426356589147, 0.21705426356589147, 0.2248062015503876, 0.2248062015503876, 0.2248062015503876, 0.24031007751937986, 0.8062015503875969], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PSD1.gap.json b/pfam_gap_rates/PSD1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..6aba8ccc98caeade993c5f7ef369be31a847b65d
--- /dev/null
+++ b/pfam_gap_rates/PSD1.gap.json
@@ -0,0 +1 @@
+{"family": "PSD1", "n_seqs": 616, "length": 292, "gap_rates": [0.4512987012987013, 0.06655844155844155, 0.045454545454545456, 0.030844155844155844, 0.027597402597402596, 0.027597402597402596, 0.025974025974025976, 0.025974025974025976, 0.025974025974025976, 0.027597402597402596, 0.030844155844155844, 0.03896103896103896, 0.04220779220779221, 0.03409090909090909, 0.02922077922077922, 0.02922077922077922, 0.025974025974025976, 0.025974025974025976, 0.025974025974025976, 0.025974025974025976, 0.025974025974025976, 0.025974025974025976, 0.024350649350649352, 0.024350649350649352, 0.024350649350649352, 0.024350649350649352, 0.024350649350649352, 0.024350649350649352, 0.024350649350649352, 0.024350649350649352, 0.024350649350649352, 0.024350649350649352, 0.024350649350649352, 0.024350649350649352, 0.024350649350649352, 0.022727272727272728, 0.024350649350649352, 0.022727272727272728, 0.024350649350649352, 0.024350649350649352, 0.024350649350649352, 0.2662337662337662, 0.08116883116883117, 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\ No newline at end of file
diff --git a/pfam_gap_rates/PSII.gap.json b/pfam_gap_rates/PSII.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..0d8402f8d774beefdce4e7799e5685a6fbb6ce17
--- /dev/null
+++ b/pfam_gap_rates/PSII.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/PT-HINT.gap.json b/pfam_gap_rates/PT-HINT.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..fc28d99da4d22c27833ce11451059d7895250394
--- /dev/null
+++ b/pfam_gap_rates/PT-HINT.gap.json
@@ -0,0 +1 @@
+{"family": "PT-HINT", "n_seqs": 315, "length": 143, "gap_rates": [0.7238095238095238, 0.546031746031746, 0.5047619047619047, 0.4222222222222222, 0.35555555555555557, 0.3333333333333333, 0.3238095238095238, 0.8952380952380953, 0.2857142857142857, 0.9015873015873016, 0.24444444444444444, 0.23492063492063492, 0.2253968253968254, 0.21904761904761905, 0.21587301587301588, 0.21587301587301588, 0.21587301587301588, 0.21587301587301588, 0.21587301587301588, 0.2126984126984127, 0.2126984126984127, 0.20952380952380953, 0.20952380952380953, 0.21904761904761905, 0.20952380952380953, 0.20317460317460317, 0.20634920634920634, 0.20952380952380953, 0.21904761904761905, 0.2253968253968254, 0.20952380952380953, 0.20952380952380953, 0.19682539682539682, 0.1873015873015873, 0.18412698412698414, 0.18095238095238095, 0.1365079365079365, 0.1365079365079365, 0.14285714285714285, 0.13968253968253969, 0.14285714285714285, 0.13333333333333333, 0.13333333333333333, 0.14603174603174604, 0.1492063492063492, 0.14603174603174604, 0.15873015873015872, 0.17142857142857143, 0.17777777777777778, 0.1492063492063492, 0.13333333333333333, 0.13333333333333333, 0.13015873015873017, 0.13333333333333333, 0.14285714285714285, 0.7333333333333333, 0.7301587301587301, 0.7206349206349206, 0.6317460317460317, 0.5777777777777777, 0.1523809523809524, 0.09523809523809523, 0.08888888888888889, 0.08253968253968254, 0.07936507936507936, 0.07301587301587302, 0.06984126984126984, 0.06666666666666667, 0.06031746031746032, 0.05714285714285714, 0.05396825396825397, 0.05396825396825397, 0.050793650793650794, 0.047619047619047616, 0.7142857142857143, 0.2857142857142857, 0.0380952380952381, 0.0380952380952381, 0.04126984126984127, 0.03492063492063492, 0.03492063492063492, 0.031746031746031744, 0.03492063492063492, 0.03492063492063492, 0.031746031746031744, 0.031746031746031744, 0.02857142857142857, 0.031746031746031744, 0.031746031746031744, 0.03492063492063492, 0.031746031746031744, 0.03492063492063492, 0.03492063492063492, 0.044444444444444446, 0.044444444444444446, 0.044444444444444446, 0.050793650793650794, 0.07301587301587302, 0.06666666666666667, 0.06349206349206349, 0.047619047619047616, 0.06349206349206349, 0.06666666666666667, 0.06666666666666667, 0.05396825396825397, 0.05714285714285714, 0.07301587301587302, 0.8063492063492064, 0.726984126984127, 0.05396825396825397, 0.05714285714285714, 0.06984126984126984, 0.06984126984126984, 0.06031746031746032, 0.05396825396825397, 0.05714285714285714, 0.05714285714285714, 0.05714285714285714, 0.05714285714285714, 0.05714285714285714, 0.06031746031746032, 0.06984126984126984, 0.06984126984126984, 0.0761904761904762, 0.0761904761904762, 0.08253968253968254, 0.07936507936507936, 0.0761904761904762, 0.0761904761904762, 0.9015873015873016, 0.9079365079365079, 0.8888888888888888, 0.7111111111111111, 0.7365079365079366, 0.23809523809523808, 0.2222222222222222, 0.15555555555555556, 0.1523809523809524, 0.14603174603174604, 0.14603174603174604, 0.14285714285714285, 0.14603174603174604, 0.638095238095238], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PTAC.gap.json b/pfam_gap_rates/PTAC.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..2bddb68fd9f32894a89d9cdab183e203a20a5ea5
--- /dev/null
+++ b/pfam_gap_rates/PTAC.gap.json
@@ -0,0 +1 @@
+{"family": "PTAC", "n_seqs": 805, "length": 86, "gap_rates": [0.7788819875776397, 0.17763975155279504, 0.031055900621118012, 0.009937888198757764, 0.009937888198757764, 0.009937888198757764, 0.008695652173913044, 0.008695652173913044, 0.008695652173913044, 0.008695652173913044, 0.006211180124223602, 0.004968944099378882, 0.004968944099378882, 0.004968944099378882, 0.006211180124223602, 0.006211180124223602, 0.004968944099378882, 0.0037267080745341614, 0.0037267080745341614, 0.0037267080745341614, 0.5080745341614907, 0.004968944099378882, 0.004968944099378882, 0.5391304347826087, 0.5093167701863354, 0.4993788819875776, 0.49813664596273294, 0.4968944099378882, 0.4968944099378882, 0.4968944099378882, 0.4968944099378882, 0.4968944099378882, 0.4968944099378882, 0.4968944099378882, 0.5254658385093167, 0.49813664596273294, 0.4956521739130435, 0.49440993788819876, 0.49440993788819876, 0.493167701863354, 0.4906832298136646, 0.004968944099378882, 0.0037267080745341614, 0.0012422360248447205, 0.0012422360248447205, 0.0, 0.0, 0.0, 0.0, 0.0, 0.34285714285714286, 0.5031055900621118, 0.5229813664596273, 0.5006211180124224, 0.009937888198757764, 0.0012422360248447205, 0.0012422360248447205, 0.4322981366459627, 0.02857142857142857, 0.011180124223602485, 0.011180124223602485, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0012422360248447205, 0.0012422360248447205, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0012422360248447205, 0.0012422360248447205, 0.007453416149068323, 0.017391304347826087, 0.1031055900621118, 0.36149068322981365], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PTE.gap.json b/pfam_gap_rates/PTE.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e1af172f807f69b779a098a40080b8936062e376
--- /dev/null
+++ b/pfam_gap_rates/PTE.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/PTPA.gap.json b/pfam_gap_rates/PTPA.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e890d837d037a29d4df2006c09e971dbf06ac000
--- /dev/null
+++ b/pfam_gap_rates/PTPA.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/PTS-HPr.gap.json b/pfam_gap_rates/PTS-HPr.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..4bc3f9eee02ef149f8999207779b57e123f37f5b
--- /dev/null
+++ b/pfam_gap_rates/PTS-HPr.gap.json
@@ -0,0 +1 @@
+{"family": "PTS-HPr", "n_seqs": 2599, "length": 83, "gap_rates": [0.4086186994998076, 0.235475182762601, 0.16506348595613698, 0.13543670642554828, 0.12466333205078876, 0.12273951519815314, 0.1208156983455175, 0.11850711812235475, 0.1177375913813005, 0.11581377452866487, 0.11388995767602925, 0.11119661408233936, 0.11081185071181224, 0.10657945363601386, 0.10350134667179685, 0.10157752981916121, 0.09003462870334744, 0.07348980377068103, 0.0119276644863409, 0.005001923816852636, 0.00461716044632551, 0.0030781069642170067, 0.001923816852635629, 0.001923816852635629, 0.001923816852635629, 0.002308580223162755, 0.005771450557906887, 0.003847633705271258, 0.0026933435936898806, 0.002308580223162755, 0.002308580223162755, 0.002308580223162755, 0.002308580223162755, 0.002308580223162755, 0.001923816852635629, 0.9476721816083109, 0.020392458637937667, 0.016929588303193535, 0.9453636013851482, 0.8233936129280492, 0.016929588303193535, 0.01654482493266641, 0.00461716044632551, 0.001923816852635629, 0.001923816852635629, 0.0030781069642170067, 0.001923816852635629, 0.001923816852635629, 0.0011542901115813775, 0.0011542901115813775, 0.0015390534821085034, 0.0030781069642170067, 0.002308580223162755, 0.0026933435936898806, 0.0030781069642170067, 0.004232397075798384, 0.007310504040015391, 0.008464794151596768, 0.020777222008464793, 0.02308580223162755, 0.00923432089265102, 0.008849557522123894, 0.008080030781069641, 0.010003847633705272, 0.0119276644863409, 0.015390534821085032, 0.01731435167372066, 0.041554444016929586, 0.03501346671796845, 0.028087726048480186, 0.03501346671796845, 0.03770681031165833, 0.0357829934590227, 0.03193535975375144, 0.03501346671796845, 0.03655252020007695, 0.04001539053482109, 0.044632550981146595, 0.05348210850327049, 0.07272027702962677, 0.09157368218545595, 0.12312427856868026, 0.30165448249326665], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PTSIIA_gutA.gap.json b/pfam_gap_rates/PTSIIA_gutA.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a2fb57d1da1634f2648d492bb3a720057221260a
--- /dev/null
+++ b/pfam_gap_rates/PTSIIA_gutA.gap.json
@@ -0,0 +1 @@
+{"family": "PTSIIA_gutA", "n_seqs": 184, "length": 123, "gap_rates": [0.5597826086956522, 0.22826086956521738, 0.07608695652173914, 0.04891304347826087, 0.03804347826086957, 0.03804347826086957, 0.03260869565217391, 0.02717391304347826, 0.02717391304347826, 0.02717391304347826, 0.02717391304347826, 0.02717391304347826, 0.02717391304347826, 0.02717391304347826, 0.02717391304347826, 0.03260869565217391, 0.03260869565217391, 0.03804347826086957, 0.27717391304347827, 0.9021739130434783, 0.021739130434782608, 0.016304347826086956, 0.016304347826086956, 0.016304347826086956, 0.016304347826086956, 0.016304347826086956, 0.016304347826086956, 0.016304347826086956, 0.016304347826086956, 0.016304347826086956, 0.016304347826086956, 0.016304347826086956, 0.016304347826086956, 0.016304347826086956, 0.010869565217391304, 0.010869565217391304, 0.010869565217391304, 0.010869565217391304, 0.010869565217391304, 0.010869565217391304, 0.010869565217391304, 0.010869565217391304, 0.010869565217391304, 0.010869565217391304, 0.7989130434782609, 0.9347826086956522, 0.8913043478260869, 0.6467391304347826, 0.021739130434782608, 0.9293478260869565, 0.9456521739130435, 0.907608695652174, 0.010869565217391304, 0.010869565217391304, 0.010869565217391304, 0.010869565217391304, 0.010869565217391304, 0.010869565217391304, 0.010869565217391304, 0.010869565217391304, 0.010869565217391304, 0.010869565217391304, 0.005434782608695652, 0.005434782608695652, 0.0, 0.005434782608695652, 0.005434782608695652, 0.005434782608695652, 0.005434782608695652, 0.005434782608695652, 0.005434782608695652, 0.005434782608695652, 0.005434782608695652, 0.005434782608695652, 0.005434782608695652, 0.005434782608695652, 0.005434782608695652, 0.010869565217391304, 0.010869565217391304, 0.010869565217391304, 0.010869565217391304, 0.010869565217391304, 0.010869565217391304, 0.010869565217391304, 0.010869565217391304, 0.010869565217391304, 0.010869565217391304, 0.010869565217391304, 0.010869565217391304, 0.010869565217391304, 0.010869565217391304, 0.010869565217391304, 0.010869565217391304, 0.010869565217391304, 0.010869565217391304, 0.016304347826086956, 0.010869565217391304, 0.06521739130434782, 0.03260869565217391, 0.016304347826086956, 0.8315217391304348, 0.016304347826086956, 0.016304347826086956, 0.016304347826086956, 0.016304347826086956, 0.016304347826086956, 0.016304347826086956, 0.016304347826086956, 0.016304347826086956, 0.016304347826086956, 0.03260869565217391, 0.08152173913043478, 0.07065217391304347, 0.08152173913043478, 0.9456521739130435, 0.09239130434782608, 0.09239130434782608, 0.09239130434782608, 0.10869565217391304, 0.11413043478260869, 0.11413043478260869, 0.15760869565217392, 0.32608695652173914], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PUD.gap.json b/pfam_gap_rates/PUD.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..1eff1be78fcf7eea4aaccde04e185388d148f897
--- /dev/null
+++ b/pfam_gap_rates/PUD.gap.json
@@ -0,0 +1 @@
+{"family": "PUD", "n_seqs": 283, "length": 131, "gap_rates": [0.6042402826855123, 0.0706713780918728, 0.04240282685512368, 0.03180212014134275, 0.03180212014134275, 0.03180212014134275, 0.038869257950530034, 0.03180212014134275, 0.911660777385159, 0.03180212014134275, 0.04946996466431095, 0.0353356890459364, 0.007067137809187279, 0.007067137809187279, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0035335689045936395, 0.0035335689045936395, 0.0035335689045936395, 0.8939929328621908, 0.8197879858657244, 0.0353356890459364, 0.8798586572438163, 0.11307420494699646, 0.028268551236749116, 0.01060070671378092, 0.014134275618374558, 0.024734982332155476, 0.038869257950530034, 0.007067137809187279, 0.44876325088339225, 0.4558303886925795, 0.6183745583038869, 0.7491166077738516, 0.8409893992932862, 0.901060070671378, 0.9328621908127208, 0.9469964664310954, 0.9434628975265018, 0.9151943462897526, 0.8692579505300353, 0.8268551236749117, 0.7279151943462897, 0.5371024734982333, 0.45229681978798586, 0.43462897526501765, 0.014134275618374558, 0.02120141342756184, 0.007067137809187279, 0.014134275618374558, 0.007067137809187279, 0.007067137809187279, 0.007067137809187279, 0.04946996466431095, 0.8621908127208481, 0.024734982332155476, 0.01060070671378092, 0.014134275618374558, 0.01060070671378092, 0.01060070671378092, 0.014134275618374558, 0.014134275618374558, 0.01060070671378092, 0.007067137809187279, 0.03180212014134275, 0.02120141342756184, 0.02120141342756184, 0.0176678445229682, 0.657243816254417, 0.8869257950530035, 0.9363957597173145, 0.9081272084805654, 0.773851590106007, 0.05653710247349823, 0.01060070671378092, 0.01060070671378092, 0.01060070671378092, 0.014134275618374558, 0.02120141342756184, 0.0176678445229682, 0.014134275618374558, 0.3710247349823322, 0.9293286219081273, 0.8833922261484098, 0.1625441696113074, 0.17314487632508835, 0.1978798586572438, 0.038869257950530034, 0.6395759717314488, 0.8657243816254417, 0.9257950530035336, 0.7243816254416962, 0.5547703180212014, 0.04946996466431095, 0.07773851590106007, 0.02120141342756184, 0.024734982332155476, 0.872791519434629, 0.024734982332155476, 0.028268551236749116, 0.028268551236749116, 0.024734982332155476, 0.0176678445229682, 0.0176678445229682, 0.0176678445229682, 0.02120141342756184, 0.03180212014134275, 0.8197879858657244, 0.9434628975265018, 0.872791519434629, 0.6537102473498233, 0.4911660777385159, 0.23674911660777384, 0.05653710247349823, 0.04946996466431095, 0.04946996466431095, 0.053003533568904596, 0.05653710247349823, 0.05653710247349823, 0.05653710247349823, 0.06713780918727916, 0.0706713780918728, 0.0989399293286219, 0.14487632508833923, 0.23674911660777384, 0.29328621908127206, 0.4381625441696113, 0.696113074204947], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PadR.gap.json b/pfam_gap_rates/PadR.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..5200407f1646e60bc85c704a4c8ffdc34bcd87f3
--- /dev/null
+++ b/pfam_gap_rates/PadR.gap.json
@@ -0,0 +1 @@
+{"family": "PadR", "n_seqs": 4412, "length": 79, "gap_rates": [0.17633726201269265, 0.10879419764279238, 0.0972348141432457, 0.08340888485947416, 0.07026291931097008, 0.08703535811423391, 0.0557570262919311, 0.9215775158658205, 0.03671804170444243, 0.03150498640072529, 0.031051677243880325, 0.021758839528558477, 0.021078875793291024, 0.020398912058023574, 0.01971894832275612, 0.019038984587488667, 0.017905711695376247, 0.01699909338168631, 0.016092475067996374, 0.019038984587488667, 0.02085222121486854, 0.02085222121486854, 0.01926563916591115, 0.3057570262919311, 0.32116953762466, 0.12330009066183137, 0.2513599274705349, 0.04329102447869447, 0.02198549410698096, 0.009519492293744334, 0.0077062556663644605, 0.00657298277425204, 0.005666364460562103, 0.004986400725294651, 0.0043064369900271985, 0.003626473254759746, 0.0029465095194922937, 0.001586582048957389, 0.00045330915684496827, 0.00045330915684496827, 0.00045330915684496827, 0.00045330915684496827, 0.0006799637352674524, 0.0011332728921124207, 0.0013599274705349048, 0.001813236627379873, 0.002039891205802357, 0.0022665457842248413, 0.0024932003626473255, 0.0029465095194922937, 0.003399818676337262, 0.0058930190389845875, 0.006346328195829556, 0.05122393472348141, 0.2717588395285585, 0.9261106074342702, 0.9490027198549411, 0.8304623753399819, 0.27629193109700817, 0.1956029011786038, 0.16409791477787852, 0.07298277425203989, 0.014505893019038985, 0.014052583862194016, 0.013825929283771533, 0.012692656391659111, 0.009519492293744334, 0.009066183136899365, 0.00929283771532185, 0.012692656391659111, 0.014505893019038985, 0.01699909338168631, 0.019492293744333637, 0.024252039891205803, 0.034904805077062555, 0.06459655485040798, 0.11718041704442429, 0.3252493200362647, 0.885312783318223], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Pal1.gap.json b/pfam_gap_rates/Pal1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b1acdd089bbb7b21807187c3d7758f5345a85d92
--- /dev/null
+++ b/pfam_gap_rates/Pal1.gap.json
@@ -0,0 +1 @@
+{"family": "Pal1", "n_seqs": 172, "length": 151, "gap_rates": [0.023255813953488372, 0.023255813953488372, 0.023255813953488372, 0.023255813953488372, 0.01744186046511628, 0.01744186046511628, 0.01744186046511628, 0.01744186046511628, 0.046511627906976744, 0.11627906976744186, 0.1511627906976744, 0.23837209302325582, 0.5697674418604651, 0.18023255813953487, 0.12209302325581395, 0.01744186046511628, 0.011627906976744186, 0.011627906976744186, 0.011627906976744186, 0.011627906976744186, 0.011627906976744186, 0.011627906976744186, 0.011627906976744186, 0.011627906976744186, 0.011627906976744186, 0.011627906976744186, 0.011627906976744186, 0.011627906976744186, 0.011627906976744186, 0.011627906976744186, 0.011627906976744186, 0.011627906976744186, 0.01744186046511628, 0.6046511627906976, 0.023255813953488372, 0.01744186046511628, 0.011627906976744186, 0.011627906976744186, 0.011627906976744186, 0.011627906976744186, 0.005813953488372093, 0.005813953488372093, 0.005813953488372093, 0.12209302325581395, 0.11046511627906977, 0.18023255813953487, 0.22674418604651161, 0.22674418604651161, 0.2616279069767442, 0.26744186046511625, 0.27906976744186046, 0.28488372093023256, 0.29069767441860467, 0.313953488372093, 0.3430232558139535, 0.3953488372093023, 0.42441860465116277, 0.4069767441860465, 0.43023255813953487, 0.4418604651162791, 0.45348837209302323, 0.46511627906976744, 0.48255813953488375, 0.4883720930232558, 0.4883720930232558, 0.4883720930232558, 0.4883720930232558, 0.4883720930232558, 0.4883720930232558, 0.4883720930232558, 0.4941860465116279, 0.6511627906976745, 0.5, 0.5058139534883721, 0.5, 0.5058139534883721, 0.4941860465116279, 0.5058139534883721, 0.8546511627906976, 0.9244186046511628, 0.9302325581395349, 0.9302325581395349, 0.9476744186046512, 0.9476744186046512, 0.9476744186046512, 0.9476744186046512, 0.9418604651162791, 0.9302325581395349, 0.9302325581395349, 0.9244186046511628, 0.8255813953488372, 0.8313953488372093, 0.5813953488372093, 0.5755813953488372, 0.5755813953488372, 0.5930232558139535, 0.6162790697674418, 0.6337209302325582, 0.6453488372093024, 0.6976744186046512, 0.7209302325581395, 0.7616279069767442, 0.8197674418604651, 0.7790697674418605, 0.75, 0.6744186046511628, 0.5755813953488372, 0.5348837209302325, 0.5116279069767442, 0.5116279069767442, 0.5116279069767442, 0.5116279069767442, 0.5058139534883721, 0.5058139534883721, 0.5058139534883721, 0.5, 0.5, 0.5, 0.5058139534883721, 0.5058139534883721, 0.5116279069767442, 0.5174418604651163, 0.5058139534883721, 0.5348837209302325, 0.5058139534883721, 0.5058139534883721, 0.5058139534883721, 0.5058139534883721, 0.5058139534883721, 0.5058139534883721, 0.5058139534883721, 0.5058139534883721, 0.5058139534883721, 0.5058139534883721, 0.5058139534883721, 0.5116279069767442, 0.5116279069767442, 0.5116279069767442, 0.5116279069767442, 0.5116279069767442, 0.5116279069767442, 0.5058139534883721, 0.5058139534883721, 0.5058139534883721, 0.5058139534883721, 0.5058139534883721, 0.5058139534883721, 0.5174418604651163, 0.5406976744186046, 0.5813953488372093, 0.7732558139534884], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/ParA.gap.json b/pfam_gap_rates/ParA.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..7a4a724ae5da345f12775a624e2a7e5f16ea8e99
--- /dev/null
+++ b/pfam_gap_rates/ParA.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Pec_lyase_C.gap.json b/pfam_gap_rates/Pec_lyase_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..905017bc75f036ce7507c4f46e836e896cf267a1
--- /dev/null
+++ b/pfam_gap_rates/Pec_lyase_C.gap.json
@@ -0,0 +1 @@
+{"family": "Pec_lyase_C", "n_seqs": 1127, "length": 236, "gap_rates": [0.9485359361135759, 0.9476486246672582, 0.9396628216503993, 0.9316770186335404, 0.9183673469387755, 0.90150842945874, 0.8961845607808341, 0.8855368234250222, 0.8766637089618456, 0.8695652173913043, 0.8598047914818101, 0.842058562555457, 0.8163265306122449, 0.7959183673469388, 0.771960958296362, 0.7417923691215617, 0.6237799467613132, 0.5261756876663709, 0.4179236912156167, 0.30612244897959184, 0.24489795918367346, 0.19787045252883761, 0.1650399290150843, 0.14551907719609583, 0.13664596273291926, 0.11978704525288376, 0.11180124223602485, 0.11180124223602485, 0.11091393078970718, 0.10913930789707187, 0.8952972493345164, 0.15616681455190773, 0.12067435669920142, 0.11978704525288376, 0.12688553682342502, 0.11801242236024845, 0.10470275066548358, 0.09316770186335403, 0.09316770186335403, 0.0940550133096717, 0.2741792369121562, 0.08961845607808341, 0.08518189884649512, 0.07897071872227152, 0.08163265306122448, 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\ No newline at end of file
diff --git a/pfam_gap_rates/Pecanex_C.gap.json b/pfam_gap_rates/Pecanex_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..804b0a226f1a22061eea6f9e667abbd0f273735a
--- /dev/null
+++ b/pfam_gap_rates/Pecanex_C.gap.json
@@ -0,0 +1 @@
+{"family": "Pecanex_C", "n_seqs": 178, "length": 230, "gap_rates": [0.7528089887640449, 0.6966292134831461, 0.5730337078651685, 0.5449438202247191, 0.4887640449438202, 0.4550561797752809, 0.43820224719101125, 0.43258426966292135, 0.43258426966292135, 0.43258426966292135, 0.43258426966292135, 0.43258426966292135, 0.43258426966292135, 0.43258426966292135, 0.43258426966292135, 0.42696629213483145, 0.42696629213483145, 0.42696629213483145, 0.42696629213483145, 0.42696629213483145, 0.42696629213483145, 0.42696629213483145, 0.42696629213483145, 0.42696629213483145, 0.42696629213483145, 0.42696629213483145, 0.42696629213483145, 0.42696629213483145, 0.42696629213483145, 0.8595505617977528, 0.43258426966292135, 0.42134831460674155, 0.4044943820224719, 0.4044943820224719, 0.4044943820224719, 0.398876404494382, 0.39325842696629215, 0.39325842696629215, 0.38764044943820225, 0.38764044943820225, 0.3651685393258427, 0.34269662921348315, 0.33146067415730335, 0.3258426966292135, 0.3089887640449438, 0.29213483146067415, 0.29213483146067415, 0.29775280898876405, 0.29775280898876405, 0.29775280898876405, 0.3595505617977528, 0.3146067415730337, 0.30337078651685395, 0.30337078651685395, 0.47752808988764045, 0.29775280898876405, 0.29775280898876405, 0.24719101123595505, 0.24719101123595505, 0.25842696629213485, 0.25280898876404495, 0.25280898876404495, 0.24157303370786518, 0.2303370786516854, 0.20786516853932585, 0.21910112359550563, 0.20786516853932585, 0.25280898876404495, 0.21910112359550563, 0.1853932584269663, 0.1853932584269663, 0.1797752808988764, 0.1797752808988764, 0.16292134831460675, 0.16853932584269662, 0.16853932584269662, 0.16292134831460675, 0.15730337078651685, 0.15168539325842698, 0.15168539325842698, 0.14606741573033707, 0.14606741573033707, 0.1404494382022472, 0.1404494382022472, 0.1404494382022472, 0.14606741573033707, 0.15168539325842698, 0.14606741573033707, 0.14606741573033707, 0.14606741573033707, 0.29213483146067415, 0.15168539325842698, 0.14606741573033707, 0.14606741573033707, 0.1797752808988764, 0.15168539325842698, 0.17415730337078653, 0.14606741573033707, 0.14606741573033707, 0.14606741573033707, 0.14606741573033707, 0.14606741573033707, 0.14606741573033707, 0.14606741573033707, 0.1404494382022472, 0.1404494382022472, 0.16292134831460675, 0.1404494382022472, 0.12921348314606743, 0.12921348314606743, 0.12921348314606743, 0.12359550561797752, 0.12359550561797752, 0.11797752808988764, 0.11797752808988764, 0.12921348314606743, 0.12359550561797752, 0.11797752808988764, 0.11797752808988764, 0.11797752808988764, 0.11797752808988764, 0.11797752808988764, 0.11797752808988764, 0.11797752808988764, 0.11797752808988764, 0.11797752808988764, 0.11797752808988764, 0.12359550561797752, 0.11797752808988764, 0.11797752808988764, 0.11235955056179775, 0.11235955056179775, 0.11235955056179775, 0.12921348314606743, 0.1348314606741573, 0.14606741573033707, 0.19101123595505617, 0.16853932584269662, 0.15168539325842698, 0.15730337078651685, 0.8932584269662921, 0.8764044943820225, 0.3202247191011236, 0.29213483146067415, 0.1853932584269663, 0.16853932584269662, 0.17415730337078653, 0.16292134831460675, 0.16292134831460675, 0.1404494382022472, 0.12921348314606743, 0.1348314606741573, 0.14606741573033707, 0.1404494382022472, 0.12921348314606743, 0.12921348314606743, 0.12921348314606743, 0.12359550561797752, 0.12359550561797752, 0.12359550561797752, 0.12359550561797752, 0.12359550561797752, 0.12359550561797752, 0.12359550561797752, 0.12359550561797752, 0.12359550561797752, 0.12359550561797752, 0.12359550561797752, 0.12921348314606743, 0.12921348314606743, 0.12921348314606743, 0.12921348314606743, 0.12921348314606743, 0.12921348314606743, 0.12921348314606743, 0.12921348314606743, 0.12921348314606743, 0.12921348314606743, 0.12921348314606743, 0.12921348314606743, 0.12921348314606743, 0.12921348314606743, 0.12921348314606743, 0.12921348314606743, 0.12359550561797752, 0.12359550561797752, 0.12359550561797752, 0.12359550561797752, 0.12359550561797752, 0.12359550561797752, 0.12359550561797752, 0.12359550561797752, 0.12921348314606743, 0.12921348314606743, 0.1348314606741573, 0.1348314606741573, 0.1348314606741573, 0.1404494382022472, 0.1404494382022472, 0.1404494382022472, 0.1404494382022472, 0.12921348314606743, 0.12921348314606743, 0.12921348314606743, 0.12921348314606743, 0.12921348314606743, 0.12921348314606743, 0.12359550561797752, 0.12921348314606743, 0.12921348314606743, 0.12921348314606743, 0.12921348314606743, 0.12359550561797752, 0.12359550561797752, 0.12921348314606743, 0.1404494382022472, 0.14606741573033707, 0.15730337078651685, 0.2752808988764045, 0.28651685393258425, 0.3089887640449438, 0.3202247191011236, 0.33146067415730335, 0.3595505617977528, 0.37640449438202245, 0.39325842696629215, 0.4044943820224719, 0.42696629213483145, 0.4438202247191011, 0.4606741573033708], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Pentapeptide_3.gap.json b/pfam_gap_rates/Pentapeptide_3.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..eb862e5df8e62d138a65aa9761a00c71747e0c7e
--- /dev/null
+++ b/pfam_gap_rates/Pentapeptide_3.gap.json
@@ -0,0 +1 @@
+{"family": "Pentapeptide_3", "n_seqs": 284, "length": 52, "gap_rates": [0.34507042253521125, 0.22887323943661972, 0.15845070422535212, 0.11619718309859155, 0.1056338028169014, 0.0880281690140845, 0.07394366197183098, 0.045774647887323945, 0.035211267605633804, 0.1936619718309859, 0.0035211267605633804, 0.0035211267605633804, 0.0035211267605633804, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.10211267605633803, 0.9401408450704225, 0.03169014084507042, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.9366197183098591, 0.2147887323943662, 0.0, 0.9436619718309859, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0035211267605633804, 0.014084507042253521, 0.028169014084507043, 0.1795774647887324, 0.04929577464788732, 0.07394366197183098, 0.09859154929577464, 0.11619718309859155, 0.1619718309859155, 0.21830985915492956, 0.2711267605633803, 0.7746478873239436], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PepX_C.gap.json b/pfam_gap_rates/PepX_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c3d894ea9c6bf75136eb5515057de916e5af754a
--- /dev/null
+++ b/pfam_gap_rates/PepX_C.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Pep_M12B_propep.gap.json b/pfam_gap_rates/Pep_M12B_propep.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..bc7a2e24fda788f404aea026aa8019b90536e4d0
--- /dev/null
+++ b/pfam_gap_rates/Pep_M12B_propep.gap.json
@@ -0,0 +1 @@
+{"family": "Pep_M12B_propep", "n_seqs": 1077, "length": 172, "gap_rates": [0.8022284122562674, 0.7260909935004642, 0.6908077994428969, 0.6861652739090065, 0.6843082636954503, 0.6778087279480037, 0.6731662024141133, 0.6713091922005571, 0.6722376973073352, 0.7019498607242339, 0.7325905292479109, 0.7437325905292479, 0.7418755803156918, 0.7270194986072424, 0.702878365831012, 0.6787372330547818, 0.6703806870937791, 0.637883008356546, 0.6202414113277623, 0.5598885793871866, 0.8161559888579387, 0.8867223769730733, 0.9136490250696379, 0.8505106778087279, 0.7437325905292479, 0.5190343546889508, 0.49303621169916434, 0.44846796657381616, 0.4298978644382544, 0.4159702878365831, 0.40297121634168986, 0.3946146703806871, 0.38904363974001854, 0.4168987929433612, 0.46518105849582175, 0.5199628597957289, 0.5691736304549675, 0.606313834726091, 0.5199628597957289, 0.7632311977715878, 0.8430826369545033, 0.8960074280408542, 0.9257195914577531, 0.9461467038068709, 0.935933147632312, 0.9155060352831941, 0.8765088207985144, 0.8245125348189415, 0.7093779015784587, 0.2906220984215413, 0.19870009285051068, 0.18477251624883936, 0.17084493964716807, 0.16341689879294335, 0.15134633240482823, 0.14391829155060354, 0.1374187558031569, 0.13463324048282266, 0.12906220984215414, 0.12534818941504178, 0.12163416898792943, 0.11792014856081709, 0.11513463324048283, 0.11327762302692665, 0.10770659238625813, 0.10492107706592387, 0.10306406685236769, 0.10306406685236769, 0.10306406685236769, 0.09749303621169916, 0.0947075208913649, 0.1457753017641597, 0.08635097493036212, 0.07892293407613742, 0.07428040854224698, 0.07242339832869081, 0.07242339832869081, 0.07242339832869081, 0.07149489322191271, 0.07056638811513463, 0.07149489322191271, 0.06963788300835655, 0.12813370473537605, 0.09285051067780872, 0.1764159702878366, 0.09656453110492108, 0.09842154131847725, 0.12906220984215414, 0.14763231197771587, 0.20612813370473537, 0.14206128133704735, 0.1244196843082637, 0.10584958217270195, 0.9424326833797586, 0.1829155060352832, 0.16991643454038996, 0.17548746518105848, 0.17827298050139276, 0.1374187558031569, 0.0733519034354689, 0.8867223769730733, 0.904363974001857, 0.9433611884865367, 0.9331476323119777, 0.8969359331476323, 0.8839368616527391, 0.0436397400185701, 0.02692664809656453, 0.025998142989786442, 0.025998142989786442, 0.034354688950789226, 0.03806870937790158, 0.04456824512534819, 0.03899721448467967, 0.03806870937790158, 0.035283194057567316, 0.03714020427112349, 0.03899721448467967, 0.04085422469823584, 0.9229340761374187, 0.035283194057567316, 0.03714020427112349, 0.035283194057567316, 0.036211699164345405, 0.03714020427112349, 0.03806870937790158, 0.036211699164345405, 0.034354688950789226, 0.03899721448467967, 0.03806870937790158, 0.8059424326833797, 0.04178272980501393, 0.8950789229340761, 0.06592386258124419, 0.08449396471680594, 0.08542246982358404, 0.08635097493036212, 0.0872794800371402, 0.09006499535747446, 0.09285051067780872, 0.09285051067780872, 0.09285051067780872, 0.9173630454967502, 0.09563602599814298, 0.09563602599814298, 0.09842154131847725, 0.10306406685236769, 0.10863509749303621, 0.11606313834726091, 0.11977715877437325, 0.1327762302692665, 0.7920148560817084, 0.8848653667595172, 0.9489322191272052, 0.9182915506035283, 0.8226555246053854, 0.7483751160631383, 0.49675023212627667, 0.5403899721448467, 0.42246982358402974, 0.41318477251624885, 0.5636025998142989, 0.43454038997214484, 0.46425255338904364, 0.4085422469823584, 0.38440111420612816, 0.37604456824512533, 0.35097493036211697, 0.35097493036211697, 0.3862581244196843, 0.4271123491179202, 0.4948932219127205], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Peptidase_C1.gap.json b/pfam_gap_rates/Peptidase_C1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..84d548c8c3fc1fb3691694cd1dad82f60e2effa3
--- /dev/null
+++ b/pfam_gap_rates/Peptidase_C1.gap.json
@@ -0,0 +1 @@
+{"family": "Peptidase_C1", "n_seqs": 5000, "length": 291, "gap_rates": [0.526, 0.3798, 0.3192, 0.2856, 0.2656, 0.262, 0.259, 0.2564, 0.2556, 0.8838, 0.8362, 0.2686, 0.404, 0.6326, 0.2474, 0.8154, 0.2272, 0.2124, 0.2038, 0.1988, 0.1948, 0.1868, 0.1836, 0.1798, 0.9486, 0.9272, 0.1764, 0.1738, 0.1698, 0.171, 0.1686, 0.1678, 0.1662, 0.1654, 0.1648, 0.1644, 0.1634, 0.163, 0.1618, 0.1574, 0.155, 0.1542, 0.1558, 0.1558, 0.1552, 0.1554, 0.155, 0.1558, 0.689, 0.8996, 0.7426, 0.1826, 0.168, 0.1574, 0.1544, 0.1528, 0.152, 0.153, 0.1526, 0.1522, 0.1536, 0.1528, 0.1546, 0.1556, 0.1546, 0.1576, 0.162, 0.6854, 0.4576, 0.2592, 0.2096, 0.165, 0.891, 0.9092, 0.9426, 0.9476, 0.9268, 0.8982, 0.8878, 0.1604, 0.1596, 0.158, 0.158, 0.158, 0.1584, 0.1546, 0.1552, 0.154, 0.155, 0.1552, 0.155, 0.1538, 0.1544, 0.1548, 0.1548, 0.9474, 0.5544, 0.1602, 0.1538, 0.1506, 0.1504, 0.1502, 0.1504, 0.1528, 0.1524, 0.1522, 0.9038, 0.9138, 0.9198, 0.9272, 0.9156, 0.9054, 0.8796, 0.1556, 0.1596, 0.158, 0.8968, 0.9262, 0.9124, 0.8948, 0.163, 0.2066, 0.2132, 0.5966, 0.721, 0.7736, 0.7922, 0.8062, 0.8234, 0.8298, 0.8632, 0.9028, 0.919, 0.9414, 0.9472, 0.9316, 0.9114, 0.8892, 0.8474, 0.8256, 0.818, 0.8004, 0.7828, 0.7556, 0.7112, 0.1826, 0.1928, 0.1828, 0.1808, 0.1776, 0.179, 0.934, 0.1816, 0.1908, 0.2036, 0.2942, 0.2898, 0.844, 0.933, 0.8716, 0.7944, 0.4486, 0.1762, 0.1676, 0.1624, 0.1632, 0.1622, 0.1616, 0.163, 0.1642, 0.1658, 0.164, 0.1694, 0.2164, 0.8484, 0.873, 0.8212, 0.3954, 0.1842, 0.1548, 0.1458, 0.1444, 0.144, 0.1418, 0.1416, 0.141, 0.1412, 0.1426, 0.4064, 0.1382, 0.1388, 0.1394, 0.139, 0.1396, 0.1406, 0.1422, 0.142, 0.1414, 0.1418, 0.1418, 0.469, 0.3598, 0.1938, 0.1472, 0.1374, 0.1362, 0.1342, 0.1354, 0.1362, 0.1394, 0.1414, 0.1416, 0.1454, 0.3926, 0.894, 0.855, 0.243, 0.2004, 0.1782, 0.2084, 0.8808, 0.842, 0.4102, 0.1532, 0.1416, 0.1374, 0.1364, 0.1366, 0.136, 0.1354, 0.1358, 0.136, 0.1364, 0.138, 0.1388, 0.139, 0.1392, 0.221, 0.7756, 0.8482, 0.9088, 0.943, 0.9464, 0.9212, 0.8822, 0.8398, 0.6008, 0.2196, 0.1892, 0.1726, 0.1424, 0.1398, 0.1396, 0.1406, 0.1392, 0.1398, 0.143, 0.147, 0.1482, 0.1516, 0.1542, 0.1552, 0.1558, 0.1574, 0.1602, 0.162, 0.1698, 0.1714, 0.173, 0.1766, 0.1892, 0.2038, 0.2168, 0.2726, 0.2964, 0.7956, 0.8372, 0.7862, 0.6388, 0.3078, 0.3086, 0.3136, 0.3268, 0.3362, 0.3498, 0.3672, 0.3956, 0.4328, 0.4886, 0.6076, 0.85], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Peptidase_C14.gap.json b/pfam_gap_rates/Peptidase_C14.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..297a1ad5e4d9d2c12b9b8deb4521d8b89756b9c7
--- /dev/null
+++ b/pfam_gap_rates/Peptidase_C14.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Peptidase_C70.gap.json b/pfam_gap_rates/Peptidase_C70.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ebeb71621e0ed4237b4a847fe31e76c9037ffd2e
--- /dev/null
+++ b/pfam_gap_rates/Peptidase_C70.gap.json
@@ -0,0 +1 @@
+{"family": "Peptidase_C70", "n_seqs": 239, "length": 190, "gap_rates": [0.9079497907949791, 0.7949790794979079, 0.6569037656903766, 0.5774058577405857, 0.4811715481171548, 0.4100418410041841, 0.3514644351464435, 0.32217573221757323, 0.25523012552301255, 0.2217573221757322, 0.20920502092050208, 0.6861924686192469, 0.698744769874477, 0.7196652719665272, 0.7238493723849372, 0.7405857740585774, 0.7531380753138075, 0.7615062761506276, 0.7573221757322176, 0.7405857740585774, 0.7405857740585774, 0.7238493723849372, 0.7154811715481172, 0.694560669456067, 0.6569037656903766, 0.14644351464435146, 0.11715481171548117, 0.09205020920502092, 0.08368200836820083, 0.07531380753138076, 0.07531380753138076, 0.07531380753138076, 0.06694560669456066, 0.06694560669456066, 0.06276150627615062, 0.058577405857740586, 0.058577405857740586, 0.05439330543933055, 0.05439330543933055, 0.058577405857740586, 0.05439330543933055, 0.05439330543933055, 0.05439330543933055, 0.05439330543933055, 0.5815899581589958, 0.2719665271966527, 0.058577405857740586, 0.058577405857740586, 0.0502092050209205, 0.04602510460251046, 0.0502092050209205, 0.0502092050209205, 0.0502092050209205, 0.0502092050209205, 0.0502092050209205, 0.0502092050209205, 0.0502092050209205, 0.7489539748953975, 0.8326359832635983, 0.891213389121339, 0.9414225941422594, 0.895397489539749, 0.8661087866108786, 0.7866108786610879, 0.6652719665271967, 0.0502092050209205, 0.08368200836820083, 0.058577405857740586, 0.6652719665271967, 0.8451882845188284, 0.9497907949790795, 0.9372384937238494, 0.7866108786610879, 0.5774058577405857, 0.2719665271966527, 0.15481171548117154, 0.11297071129707113, 0.0794979079497908, 0.06276150627615062, 0.07112970711297072, 0.06276150627615062, 0.21338912133891214, 0.17154811715481172, 0.1799163179916318, 0.14644351464435146, 0.1297071129707113, 0.10460251046025104, 0.09623430962343096, 0.08786610878661087, 0.0794979079497908, 0.04184100418410042, 0.04184100418410042, 0.04602510460251046, 0.04602510460251046, 0.04184100418410042, 0.04184100418410042, 0.9497907949790795, 0.5857740585774058, 0.41422594142259417, 0.2719665271966527, 0.17154811715481172, 0.07531380753138076, 0.04602510460251046, 0.0794979079497908, 0.09623430962343096, 0.12552301255230125, 0.502092050209205, 0.5062761506276151, 0.8451882845188284, 0.9121338912133892, 0.9414225941422594, 0.9497907949790795, 0.9330543933054394, 0.8786610878661087, 0.7907949790794979, 0.401673640167364, 0.24686192468619247, 0.19665271966527198, 0.03765690376569038, 0.02510460251046025, 0.029288702928870293, 0.02510460251046025, 0.029288702928870293, 0.02092050209205021, 0.016736401673640166, 0.016736401673640166, 0.02092050209205021, 0.02092050209205021, 0.016736401673640166, 0.029288702928870293, 0.016736401673640166, 0.016736401673640166, 0.016736401673640166, 0.016736401673640166, 0.016736401673640166, 0.39748953974895396, 0.06276150627615062, 0.03347280334728033, 0.03347280334728033, 0.21338912133891214, 0.3891213389121339, 0.38493723849372385, 0.5146443514644351, 0.12133891213389121, 0.02092050209205021, 0.016736401673640166, 0.016736401673640166, 0.02092050209205021, 0.02092050209205021, 0.016736401673640166, 0.016736401673640166, 0.03765690376569038, 0.0502092050209205, 0.03765690376569038, 0.04184100418410042, 0.03765690376569038, 0.04184100418410042, 0.24267782426778242, 0.5230125523012552, 0.7824267782426778, 0.8619246861924686, 0.9163179916317992, 0.9037656903765691, 0.8200836820083682, 0.7615062761506276, 0.06276150627615062, 0.058577405857740586, 0.06276150627615062, 0.06694560669456066, 0.07531380753138076, 0.08368200836820083, 0.08786610878661087, 0.09205020920502092, 0.1297071129707113, 0.200836820083682, 0.301255230125523, 0.33472803347280333, 0.401673640167364, 0.47280334728033474, 0.7573221757322176, 0.7364016736401674, 0.502092050209205, 0.5774058577405857, 0.6108786610878661, 0.6359832635983264, 0.6569037656903766, 0.698744769874477, 0.7364016736401674, 0.7907949790794979, 0.8702928870292888], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Peptidase_C92.gap.json b/pfam_gap_rates/Peptidase_C92.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f48501c076520f1e814481fe643ad0b784322419
--- /dev/null
+++ b/pfam_gap_rates/Peptidase_C92.gap.json
@@ -0,0 +1 @@
+{"family": "Peptidase_C92", "n_seqs": 391, "length": 235, "gap_rates": [0.9462915601023018, 0.4117647058823529, 0.29411764705882354, 0.2071611253196931, 0.2020460358056266, 0.16112531969309463, 0.1483375959079284, 0.1432225063938619, 0.1432225063938619, 0.14066496163682865, 0.14066496163682865, 0.14066496163682865, 0.1636828644501279, 0.8823529411764706, 0.16624040920716113, 0.15089514066496162, 0.13554987212276215, 0.12531969309462915, 0.12276214833759591, 0.11253196930946291, 0.10997442455242967, 0.10741687979539642, 0.10230179028132992, 0.25831202046035806, 0.23273657289002558, 0.22250639386189258, 0.8107416879795396, 0.8670076726342711, 0.8567774936061381, 0.7800511508951407, 0.07672634271099744, 0.05370843989769821, 0.043478260869565216, 0.03324808184143223, 0.028132992327365727, 0.02557544757033248, 0.02557544757033248, 0.02557544757033248, 0.02557544757033248, 0.028132992327365727, 0.03324808184143223, 0.05115089514066496, 0.0741687979539642, 0.08439897698209718, 0.7161125319693095, 0.7391304347826086, 0.7493606138107417, 0.8235294117647058, 0.8414322250639387, 0.8516624040920716, 0.8593350383631714, 0.8695652173913043, 0.8721227621483376, 0.9258312020460358, 0.9335038363171355, 0.8823529411764706, 0.8721227621483376, 0.8618925831202046, 0.8516624040920716, 0.8516624040920716, 0.8414322250639387, 0.7621483375959079, 0.7442455242966752, 0.731457800511509, 0.670076726342711, 0.09207161125319693, 0.4782608695652174, 0.16879795396419436, 0.12276214833759591, 0.0639386189258312, 0.023017902813299233, 0.015345268542199489, 0.015345268542199489, 0.3145780051150895, 0.1432225063938619, 0.03836317135549872, 0.020460358056265986, 0.8925831202046036, 0.9002557544757033, 0.9386189258312021, 0.907928388746803, 0.8951406649616368, 0.887468030690537, 0.017902813299232736, 0.020460358056265986, 0.020460358056265986, 0.017902813299232736, 0.02557544757033248, 0.02557544757033248, 0.028132992327365727, 0.023017902813299233, 0.023017902813299233, 0.020460358056265986, 0.015345268542199489, 0.020460358056265986, 0.2531969309462916, 0.5728900255754475, 0.8081841432225064, 0.928388746803069, 0.8491048593350383, 0.7774936061381074, 0.4782608695652174, 0.17902813299232737, 0.03324808184143223, 0.028132992327365727, 0.017902813299232736, 0.017902813299232736, 0.017902813299232736, 0.015345268542199489, 0.01278772378516624, 0.015345268542199489, 0.015345268542199489, 0.017902813299232736, 0.05115089514066496, 0.8951406649616368, 0.9207161125319693, 0.8184143222506394, 0.5396419437340153, 0.21739130434782608, 0.061381074168797956, 0.03836317135549872, 0.01278772378516624, 0.01278772378516624, 0.015345268542199489, 0.015345268542199489, 0.015345268542199489, 0.015345268542199489, 0.01278772378516624, 0.023017902813299233, 0.015345268542199489, 0.017902813299232736, 0.015345268542199489, 0.015345268542199489, 0.017902813299232736, 0.015345268542199489, 0.015345268542199489, 0.015345268542199489, 0.015345268542199489, 0.015345268542199489, 0.020460358056265986, 0.04603580562659847, 0.30434782608695654, 0.2659846547314578, 0.27365728900255754, 0.2608695652173913, 0.7340153452685422, 0.7979539641943734, 0.8158567774936062, 0.8900255754475703, 0.907928388746803, 0.928388746803069, 0.9156010230179028, 0.8976982097186701, 0.8797953964194374, 0.8081841432225064, 0.7800511508951407, 0.5421994884910486, 0.23273657289002558, 0.23273657289002558, 0.23273657289002558, 0.23273657289002558, 0.23273657289002558, 0.23529411764705882, 0.23529411764705882, 0.23785166240409208, 0.23785166240409208, 0.23785166240409208, 0.23785166240409208, 0.23785166240409208, 0.24040920716112532, 0.24040920716112532, 0.5856777493606138, 0.3452685421994885, 0.36061381074168797, 0.39641943734015345, 0.3989769820971867, 0.5115089514066496, 0.5421994884910486, 0.5473145780051151, 0.5831202046035806, 0.5856777493606138, 0.5933503836317136, 0.6086956521739131, 0.6342710997442456, 0.6419437340153452, 0.6240409207161125, 0.6368286445012787, 0.649616368286445, 0.6547314578005116, 0.6649616368286445, 0.7391304347826086, 0.7289002557544757, 0.7289002557544757, 0.7365728900255755, 0.7698209718670077, 0.7774936061381074, 0.7851662404092071, 0.7851662404092071, 0.7774936061381074, 0.8107416879795396, 0.8132992327365729, 0.8158567774936062, 0.8209718670076727, 0.8772378516624041, 0.8976982097186701, 0.9028132992327366, 0.9156010230179028, 0.9028132992327366, 0.8976982097186701, 0.8260869565217391, 0.8158567774936062, 0.8158567774936062, 0.8132992327365729, 0.8107416879795396, 0.782608695652174, 0.7851662404092071, 0.7851662404092071, 0.7877237851662404, 0.7877237851662404, 0.7877237851662404, 0.7621483375959079, 0.7621483375959079, 0.7647058823529411, 0.7647058823529411, 0.7647058823529411, 0.7647058823529411, 0.7698209718670077, 0.7698209718670077, 0.7698209718670077, 0.7749360613810742, 0.7800511508951407, 0.7979539641943734, 0.8184143222506394, 0.8286445012787724, 0.9309462915601023], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Peptidase_S24.gap.json b/pfam_gap_rates/Peptidase_S24.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..4005c3b07ec7f91d1bfaabd9637a589e7b420cf2
--- /dev/null
+++ b/pfam_gap_rates/Peptidase_S24.gap.json
@@ -0,0 +1 @@
+{"family": "Peptidase_S24", "n_seqs": 5000, "length": 103, "gap_rates": [0.456, 0.1198, 0.0652, 0.0366, 0.0308, 0.029, 0.0168, 0.7114, 0.0152, 0.0142, 0.0136, 0.0108, 0.0086, 0.0058, 0.005, 0.0046, 0.0038, 0.0038, 0.0038, 0.003, 0.003, 0.9308, 0.0104, 0.0058, 0.0026, 0.5368, 0.6278, 0.851, 0.8578, 0.8612, 0.8664, 0.8682, 0.8736, 0.9382, 0.9414, 0.944, 0.9434, 0.94, 0.9352, 0.87, 0.8674, 0.8644, 0.8586, 0.8562, 0.8222, 0.5904, 0.4834, 0.0028, 0.0026, 0.0026, 0.002, 0.002, 0.002, 0.0018, 0.0016, 0.002, 0.0022, 0.0044, 0.007, 0.011, 0.0138, 0.0166, 0.2976, 0.8752, 0.9166, 0.9334, 0.9488, 0.924, 0.9028, 0.6368, 0.5038, 0.047, 0.0456, 0.0474, 0.0492, 0.0504, 0.0522, 0.057, 0.069, 0.0794, 0.0916, 0.1, 0.1116, 0.1302, 0.1454, 0.1542, 0.4284, 0.4416, 0.5076, 0.5248, 0.5526, 0.944, 0.3436, 0.6974, 0.3206, 0.33, 0.3398, 0.3596, 0.4066, 0.4642, 0.5566, 0.6858, 0.8656], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Peptidase_S51.gap.json b/pfam_gap_rates/Peptidase_S51.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..6cf2520c19aa2185c087e53e11ef3bd737869e1e
--- /dev/null
+++ b/pfam_gap_rates/Peptidase_S51.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Peptidase_S74.gap.json b/pfam_gap_rates/Peptidase_S74.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..602be85bc57620cb52374512c7b97c086ddd48d4
--- /dev/null
+++ b/pfam_gap_rates/Peptidase_S74.gap.json
@@ -0,0 +1 @@
+{"family": "Peptidase_S74", "n_seqs": 551, "length": 72, "gap_rates": [0.05989110707803993, 0.0544464609800363, 0.041742286751361164, 0.032667876588021776, 0.025408348457350273, 0.025408348457350273, 0.034482758620689655, 0.018148820326678767, 0.018148820326678767, 0.018148820326678767, 0.014519056261343012, 0.014519056261343012, 0.9473684210526315, 0.7404718693284936, 0.056261343012704176, 0.039927404718693285, 0.025408348457350273, 0.7495462794918331, 0.9382940108892922, 0.6896551724137931, 0.012704174228675136, 0.010889292196007259, 0.009074410163339383, 0.007259528130671506, 0.0054446460980036296, 0.009074410163339383, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.014519056261343012, 0.2595281306715064, 0.4791288566243194, 0.5099818511796733, 0.8294010889292196, 0.8874773139745916, 0.9165154264972777, 0.9382940108892922, 0.9491833030852994, 0.9346642468239564, 0.9092558983666061, 0.8784029038112523, 0.7858439201451906, 0.5027223230490018, 0.5009074410163339, 0.4355716878402904, 0.29038112522686027, 0.2813067150635209, 0.06170598911070781, 0.02722323049001815, 0.012704174228675136, 0.009074410163339383, 0.0054446460980036296, 0.007259528130671506, 0.0054446460980036296, 0.0054446460980036296, 0.0054446460980036296, 0.0054446460980036296, 0.007259528130671506, 0.007259528130671506, 0.007259528130671506, 0.010889292196007259, 0.02722323049001815, 0.047186932849364795, 0.06715063520871144, 0.10526315789473684, 0.1851179673321234, 0.3484573502722323], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Per1.gap.json b/pfam_gap_rates/Per1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..056d935b79e58530cff43c0ca25c29eddbdd7c64
--- /dev/null
+++ b/pfam_gap_rates/Per1.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Perilipin.gap.json b/pfam_gap_rates/Perilipin.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..329c599ea45ba7c268af09c11585d35e8175bf5d
--- /dev/null
+++ b/pfam_gap_rates/Perilipin.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Pex14_N.gap.json b/pfam_gap_rates/Pex14_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c108f65684c04794659a4d527aadc3e60fb8b2ac
--- /dev/null
+++ b/pfam_gap_rates/Pex14_N.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/PglZ.gap.json b/pfam_gap_rates/PglZ.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d1c3951135c95d68a81f168b365ccb9efd8ea909
--- /dev/null
+++ b/pfam_gap_rates/PglZ.gap.json
@@ -0,0 +1 @@
+{"family": "PglZ", "n_seqs": 382, "length": 207, "gap_rates": [0.6073298429319371, 0.33507853403141363, 0.21727748691099477, 0.0549738219895288, 0.034031413612565446, 0.031413612565445025, 0.028795811518324606, 0.028795811518324606, 0.028795811518324606, 0.028795811518324606, 0.028795811518324606, 0.028795811518324606, 0.028795811518324606, 0.028795811518324606, 0.028795811518324606, 0.028795811518324606, 0.028795811518324606, 0.028795811518324606, 0.028795811518324606, 0.028795811518324606, 0.028795811518324606, 0.028795811518324606, 0.028795811518324606, 0.028795811518324606, 0.034031413612565446, 0.0549738219895288, 0.05759162303664921, 0.049738219895287955, 0.18848167539267016, 0.07853403141361257, 0.04712041884816754, 0.03926701570680628, 0.112565445026178, 0.8691099476439791, 0.93717277486911, 0.9476439790575916, 0.9293193717277487, 0.8664921465968587, 0.2879581151832461, 0.21465968586387435, 0.02356020942408377, 0.020942408376963352, 0.020942408376963352, 0.020942408376963352, 0.020942408376963352, 0.020942408376963352, 0.020942408376963352, 0.020942408376963352, 0.01832460732984293, 0.01832460732984293, 0.01832460732984293, 0.01832460732984293, 0.015706806282722512, 0.015706806282722512, 0.015706806282722512, 0.015706806282722512, 0.015706806282722512, 0.015706806282722512, 0.015706806282722512, 0.015706806282722512, 0.01832460732984293, 0.05759162303664921, 0.05759162303664921, 0.06544502617801047, 0.06282722513089005, 0.2801047120418848, 0.2356020942408377, 0.09424083769633508, 0.0549738219895288, 0.049738219895287955, 0.03926701570680628, 0.03926701570680628, 0.034031413612565446, 0.03926701570680628, 0.03664921465968586, 0.028795811518324606, 0.028795811518324606, 0.028795811518324606, 0.028795811518324606, 0.028795811518324606, 0.020942408376963352, 0.05759162303664921, 0.031413612565445025, 0.028795811518324606, 0.03926701570680628, 0.031413612565445025, 0.9476439790575916, 0.028795811518324606, 0.9476439790575916, 0.02617801047120419, 0.02617801047120419, 0.028795811518324606, 0.16230366492146597, 0.16230366492146597, 0.1518324607329843, 0.34554973821989526, 0.56282722513089, 0.7172774869109948, 0.9345549738219895, 0.6047120418848168, 0.5130890052356021, 0.31675392670157065, 0.03664921465968586, 0.028795811518324606, 0.028795811518324606, 0.02617801047120419, 0.02356020942408377, 0.020942408376963352, 0.020942408376963352, 0.02356020942408377, 0.02356020942408377, 0.020942408376963352, 0.02356020942408377, 0.020942408376963352, 0.015706806282722512, 0.013089005235602094, 0.013089005235602094, 0.01832460732984293, 0.020942408376963352, 0.028795811518324606, 0.031413612565445025, 0.5052356020942408, 0.5916230366492147, 0.93717277486911, 0.5340314136125655, 0.4712041884816754, 0.09947643979057591, 0.041884816753926704, 0.020942408376963352, 0.01832460732984293, 0.015706806282722512, 0.020942408376963352, 0.020942408376963352, 0.01832460732984293, 0.013089005235602094, 0.020942408376963352, 0.013089005235602094, 0.015706806282722512, 0.013089005235602094, 0.015706806282722512, 0.010471204188481676, 0.007853403141361256, 0.007853403141361256, 0.013089005235602094, 0.015706806282722512, 0.010471204188481676, 0.6256544502617801, 0.6256544502617801, 0.6256544502617801, 0.6256544502617801, 0.6256544502617801, 0.25654450261780104, 0.2356020942408377, 0.14397905759162305, 0.028795811518324606, 0.02356020942408377, 0.028795811518324606, 0.020942408376963352, 0.02617801047120419, 0.02617801047120419, 0.015706806282722512, 0.013089005235602094, 0.010471204188481676, 0.02617801047120419, 0.02356020942408377, 0.015706806282722512, 0.013089005235602094, 0.013089005235602094, 0.45287958115183247, 0.4738219895287958, 0.49214659685863876, 0.612565445026178, 0.49214659685863876, 0.468586387434555, 0.4476439790575916, 0.015706806282722512, 0.015706806282722512, 0.015706806282722512, 0.010471204188481676, 0.010471204188481676, 0.013089005235602094, 0.013089005235602094, 0.015706806282722512, 0.010471204188481676, 0.013089005235602094, 0.010471204188481676, 0.015706806282722512, 0.7879581151832461, 0.612565445026178, 0.01832460732984293, 0.010471204188481676, 0.010471204188481676, 0.010471204188481676, 0.010471204188481676, 0.010471204188481676, 0.010471204188481676, 0.010471204188481676, 0.010471204188481676, 0.010471204188481676, 0.013089005235602094, 0.013089005235602094, 0.05759162303664921, 0.18324607329842932, 0.21727748691099477, 0.29581151832460734, 0.387434554973822, 0.5471204188481675], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Phage_base_V.gap.json b/pfam_gap_rates/Phage_base_V.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..7bdd98abadb5d868fca72c889f7f00d4086f25f0
--- /dev/null
+++ b/pfam_gap_rates/Phage_base_V.gap.json
@@ -0,0 +1 @@
+{"family": "Phage_base_V", "n_seqs": 150, "length": 120, "gap_rates": [0.7933333333333333, 0.47333333333333333, 0.44, 0.42, 0.4066666666666667, 0.34, 0.31333333333333335, 0.30666666666666664, 0.25333333333333335, 0.16, 0.12666666666666668, 0.08, 0.05333333333333334, 0.04, 0.04, 0.04, 0.04, 0.04, 0.04, 0.04, 0.09333333333333334, 0.09333333333333334, 0.06, 0.88, 0.8466666666666667, 0.04666666666666667, 0.03333333333333333, 0.02666666666666667, 0.02666666666666667, 0.02666666666666667, 0.02666666666666667, 0.8, 0.84, 0.74, 0.013333333333333334, 0.013333333333333334, 0.84, 0.8866666666666667, 0.7666666666666667, 0.013333333333333334, 0.02, 0.013333333333333334, 0.013333333333333334, 0.013333333333333334, 0.013333333333333334, 0.013333333333333334, 0.013333333333333334, 0.013333333333333334, 0.02, 0.02666666666666667, 0.03333333333333333, 0.03333333333333333, 0.03333333333333333, 0.03333333333333333, 0.03333333333333333, 0.02, 0.013333333333333334, 0.013333333333333334, 0.013333333333333334, 0.013333333333333334, 0.013333333333333334, 0.013333333333333334, 0.013333333333333334, 0.013333333333333334, 0.013333333333333334, 0.013333333333333334, 0.013333333333333334, 0.013333333333333334, 0.0, 0.013333333333333334, 0.006666666666666667, 0.04, 0.06666666666666667, 0.006666666666666667, 0.013333333333333334, 0.02, 0.04, 0.02666666666666667, 0.006666666666666667, 0.006666666666666667, 0.013333333333333334, 0.013333333333333334, 0.013333333333333334, 0.013333333333333334, 0.013333333333333334, 0.013333333333333334, 0.013333333333333334, 0.013333333333333334, 0.02, 0.02666666666666667, 0.02, 0.02, 0.04, 0.02666666666666667, 0.04, 0.04666666666666667, 0.06, 0.06666666666666667, 0.1, 0.1, 0.10666666666666667, 0.12, 0.14, 0.16, 0.16666666666666666, 0.18, 0.18, 0.18666666666666668, 0.2, 0.21333333333333335, 0.21333333333333335, 0.24, 0.24666666666666667, 0.24666666666666667, 0.25333333333333335, 0.25333333333333335, 0.25333333333333335, 0.26, 0.36, 0.5], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PhnG.gap.json b/pfam_gap_rates/PhnG.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e0cd2167e8dfb8351a39bdafdb6095b0701471a0
--- /dev/null
+++ b/pfam_gap_rates/PhnG.gap.json
@@ -0,0 +1 @@
+{"family": "PhnG", "n_seqs": 172, "length": 152, "gap_rates": [0.26744186046511625, 0.1569767441860465, 0.13372093023255813, 0.11046511627906977, 0.0872093023255814, 0.029069767441860465, 0.029069767441860465, 0.01744186046511628, 0.01744186046511628, 0.01744186046511628, 0.01744186046511628, 0.01744186046511628, 0.03488372093023256, 0.01744186046511628, 0.011627906976744186, 0.01744186046511628, 0.011627906976744186, 0.011627906976744186, 0.011627906976744186, 0.011627906976744186, 0.011627906976744186, 0.011627906976744186, 0.011627906976744186, 0.023255813953488372, 0.936046511627907, 0.936046511627907, 0.8546511627906976, 0.046511627906976744, 0.03488372093023256, 0.13953488372093023, 0.040697674418604654, 0.05813953488372093, 0.011627906976744186, 0.011627906976744186, 0.011627906976744186, 0.011627906976744186, 0.029069767441860465, 0.01744186046511628, 0.011627906976744186, 0.005813953488372093, 0.005813953488372093, 0.005813953488372093, 0.005813953488372093, 0.005813953488372093, 0.005813953488372093, 0.011627906976744186, 0.005813953488372093, 0.005813953488372093, 0.005813953488372093, 0.005813953488372093, 0.005813953488372093, 0.005813953488372093, 0.005813953488372093, 0.005813953488372093, 0.005813953488372093, 0.005813953488372093, 0.005813953488372093, 0.011627906976744186, 0.011627906976744186, 0.011627906976744186, 0.011627906976744186, 0.011627906976744186, 0.01744186046511628, 0.01744186046511628, 0.01744186046511628, 0.01744186046511628, 0.01744186046511628, 0.01744186046511628, 0.01744186046511628, 0.01744186046511628, 0.01744186046511628, 0.2558139534883721, 0.9476744186046512, 0.9476744186046512, 0.9476744186046512, 0.9418604651162791, 0.023255813953488372, 0.01744186046511628, 0.01744186046511628, 0.9127906976744186, 0.936046511627907, 0.936046511627907, 0.9069767441860465, 0.011627906976744186, 0.011627906976744186, 0.011627906976744186, 0.011627906976744186, 0.011627906976744186, 0.011627906976744186, 0.011627906976744186, 0.011627906976744186, 0.011627906976744186, 0.011627906976744186, 0.011627906976744186, 0.011627906976744186, 0.011627906976744186, 0.011627906976744186, 0.01744186046511628, 0.01744186046511628, 0.023255813953488372, 0.023255813953488372, 0.023255813953488372, 0.023255813953488372, 0.023255813953488372, 0.023255813953488372, 0.023255813953488372, 0.023255813953488372, 0.023255813953488372, 0.023255813953488372, 0.023255813953488372, 0.023255813953488372, 0.26744186046511625, 0.05813953488372093, 0.03488372093023256, 0.046511627906976744, 0.040697674418604654, 0.040697674418604654, 0.05813953488372093, 0.023255813953488372, 0.023255813953488372, 0.023255813953488372, 0.023255813953488372, 0.023255813953488372, 0.023255813953488372, 0.029069767441860465, 0.023255813953488372, 0.023255813953488372, 0.023255813953488372, 0.023255813953488372, 0.029069767441860465, 0.023255813953488372, 0.023255813953488372, 0.023255813953488372, 0.023255813953488372, 0.023255813953488372, 0.023255813953488372, 0.023255813953488372, 0.023255813953488372, 0.023255813953488372, 0.023255813953488372, 0.023255813953488372, 0.023255813953488372, 0.023255813953488372, 0.023255813953488372, 0.023255813953488372, 0.023255813953488372, 0.023255813953488372, 0.029069767441860465, 0.06395348837209303, 0.32558139534883723, 0.3430232558139535, 0.37209302325581395], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PhnH.gap.json b/pfam_gap_rates/PhnH.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..df7de6dad0895095d16a8ef543901b057b60bf35
--- /dev/null
+++ b/pfam_gap_rates/PhnH.gap.json
@@ -0,0 +1 @@
+{"family": "PhnH", "n_seqs": 175, "length": 206, "gap_rates": [0.7142857142857143, 0.35428571428571426, 0.35428571428571426, 0.3485714285714286, 0.2, 0.16, 0.13142857142857142, 0.09142857142857143, 0.07428571428571429, 0.07428571428571429, 0.045714285714285714, 0.04, 0.02857142857142857, 0.02857142857142857, 0.02857142857142857, 0.02857142857142857, 0.02857142857142857, 0.022857142857142857, 0.022857142857142857, 0.022857142857142857, 0.022857142857142857, 0.022857142857142857, 0.022857142857142857, 0.022857142857142857, 0.022857142857142857, 0.022857142857142857, 0.022857142857142857, 0.022857142857142857, 0.022857142857142857, 0.022857142857142857, 0.022857142857142857, 0.03428571428571429, 0.05714285714285714, 0.16, 0.16, 0.8, 0.8914285714285715, 0.8571428571428571, 0.4685714285714286, 0.14857142857142858, 0.12, 0.10857142857142857, 0.08, 0.06857142857142857, 0.045714285714285714, 0.022857142857142857, 0.022857142857142857, 0.022857142857142857, 0.022857142857142857, 0.022857142857142857, 0.017142857142857144, 0.017142857142857144, 0.017142857142857144, 0.017142857142857144, 0.017142857142857144, 0.017142857142857144, 0.017142857142857144, 0.011428571428571429, 0.011428571428571429, 0.011428571428571429, 0.011428571428571429, 0.18857142857142858, 0.18857142857142858, 0.11428571428571428, 0.13714285714285715, 0.12, 0.13142857142857142, 0.14857142857142858, 0.5885714285714285, 0.12, 0.04, 0.03428571428571429, 0.04, 0.011428571428571429, 0.011428571428571429, 0.011428571428571429, 0.005714285714285714, 0.017142857142857144, 0.005714285714285714, 0.005714285714285714, 0.005714285714285714, 0.005714285714285714, 0.011428571428571429, 0.005714285714285714, 0.005714285714285714, 0.005714285714285714, 0.005714285714285714, 0.011428571428571429, 0.005714285714285714, 0.005714285714285714, 0.49142857142857144, 0.005714285714285714, 0.005714285714285714, 0.005714285714285714, 0.005714285714285714, 0.005714285714285714, 0.005714285714285714, 0.011428571428571429, 0.011428571428571429, 0.8571428571428571, 0.8857142857142857, 0.8685714285714285, 0.8514285714285714, 0.005714285714285714, 0.22285714285714286, 0.045714285714285714, 0.03428571428571429, 0.02857142857142857, 0.06857142857142857, 0.06857142857142857, 0.03428571428571429, 0.005714285714285714, 0.005714285714285714, 0.005714285714285714, 0.005714285714285714, 0.005714285714285714, 0.005714285714285714, 0.005714285714285714, 0.005714285714285714, 0.005714285714285714, 0.005714285714285714, 0.005714285714285714, 0.005714285714285714, 0.005714285714285714, 0.005714285714285714, 0.005714285714285714, 0.005714285714285714, 0.005714285714285714, 0.005714285714285714, 0.011428571428571429, 0.005714285714285714, 0.005714285714285714, 0.02857142857142857, 0.017142857142857144, 0.017142857142857144, 0.022857142857142857, 0.02857142857142857, 0.19428571428571428, 0.84, 0.8742857142857143, 0.9257142857142857, 0.9485714285714286, 0.9314285714285714, 0.8914285714285715, 0.8514285714285714, 0.8114285714285714, 0.005714285714285714, 0.005714285714285714, 0.005714285714285714, 0.005714285714285714, 0.005714285714285714, 0.005714285714285714, 0.005714285714285714, 0.005714285714285714, 0.005714285714285714, 0.011428571428571429, 0.011428571428571429, 0.011428571428571429, 0.011428571428571429, 0.011428571428571429, 0.011428571428571429, 0.011428571428571429, 0.011428571428571429, 0.011428571428571429, 0.32571428571428573, 0.12571428571428572, 0.09142857142857143, 0.09142857142857143, 0.12, 0.14285714285714285, 0.08, 0.06285714285714286, 0.05142857142857143, 0.06285714285714286, 0.022857142857142857, 0.02857142857142857, 0.02857142857142857, 0.022857142857142857, 0.005714285714285714, 0.005714285714285714, 0.005714285714285714, 0.005714285714285714, 0.005714285714285714, 0.005714285714285714, 0.005714285714285714, 0.005714285714285714, 0.005714285714285714, 0.005714285714285714, 0.005714285714285714, 0.005714285714285714, 0.005714285714285714, 0.005714285714285714, 0.8, 0.005714285714285714, 0.005714285714285714, 0.005714285714285714, 0.005714285714285714, 0.005714285714285714, 0.005714285714285714, 0.005714285714285714, 0.005714285714285714, 0.005714285714285714, 0.011428571428571429, 0.017142857142857144, 0.07428571428571429, 0.68], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PhoLip_ATPase_C.gap.json b/pfam_gap_rates/PhoLip_ATPase_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..25b05bbd76b6774fd8c4b2ff9a50fbfffe05f49d
--- /dev/null
+++ b/pfam_gap_rates/PhoLip_ATPase_C.gap.json
@@ -0,0 +1 @@
+{"family": "PhoLip_ATPase_C", "n_seqs": 2219, "length": 259, "gap_rates": [0.32582244254168546, 0.10815682739972961, 0.08111762054979721, 0.07841369986480397, 0.07706173952230734, 0.07706173952230734, 0.07706173952230734, 0.0761604326273096, 0.07480847228481298, 0.07300585849481749, 0.07300585849481749, 0.07255520504731862, 0.07255520504731862, 0.07165389815232087, 0.07075259125732312, 0.0694006309148265, 0.06849932401982875, 0.06849932401982875, 0.06714736367733214, 0.067598017124831, 0.07075259125732312, 0.06849932401982875, 0.06849932401982875, 0.06894997746732763, 0.06804867057232988, 0.06849932401982875, 0.06849932401982875, 0.06849932401982875, 0.067598017124831, 0.06624605678233439, 0.06579540333483551, 0.06624605678233439, 0.06624605678233439, 0.06669671022983326, 0.06669671022983326, 0.06804867057232988, 0.06849932401982875, 0.06849932401982875, 0.06804867057232988, 0.06849932401982875, 0.07030193780982424, 0.06985128436232538, 0.06849932401982875, 0.06804867057232988, 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\ No newline at end of file
diff --git a/pfam_gap_rates/PhoLip_ATPase_N.gap.json b/pfam_gap_rates/PhoLip_ATPase_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..82100b9065e3cbdea0fbe134decd7d450058c57c
--- /dev/null
+++ b/pfam_gap_rates/PhoLip_ATPase_N.gap.json
@@ -0,0 +1 @@
+{"family": "PhoLip_ATPase_N", "n_seqs": 1907, "length": 72, "gap_rates": [0.7451494493969586, 0.6764551651809124, 0.6502359727320398, 0.6308337703198742, 0.6177241740954379, 0.6077608809648662, 0.583114840062926, 0.5757734661772418, 0.519140010487677, 0.42475091767173573, 0.9066596748820136, 0.9480859989512324, 0.940744625065548, 0.8725747246984793, 0.2852648138437336, 0.20188778185631884, 0.9318300996329313, 0.11116937598321971, 0.09386470896696382, 0.0540115364446775, 0.030414263240692185, 0.027267960146827478, 0.025694808599895123, 0.019402202412165705, 0.012585212375458836, 0.01101206082852648, 0.01101206082852648, 0.008390141583639224, 0.0057682223387519665, 0.0057682223387519665, 0.005243838489774515, 0.003146303093864709, 0.003146303093864709, 0.003146303093864709, 0.003146303093864709, 0.0026219192448872575, 0.002097535395909806, 0.0015731515469323545, 0.0005243838489774515, 0.001048767697954903, 0.001048767697954903, 0.001048767697954903, 0.0026219192448872575, 0.003146303093864709, 0.0047194546407970635, 0.006292606187729418, 0.006292606187729418, 0.0068169900367068695, 0.0068169900367068695, 0.008914525432616675, 0.008914525432616675, 0.009438909281594127, 0.01048767697954903, 0.009963293130571578, 0.009963293130571578, 0.01101206082852648, 0.011536444677503933, 0.012585212375458836, 0.014682747771368642, 0.02045097011012061, 0.10120608285264814, 0.11431567907708443, 0.0346093340325118, 0.04771893025694809, 0.0886208704771893, 0.12165705296276874, 0.1588883062401678, 0.19402202412165706, 0.27058206607236496, 0.34452018877818563, 0.42842160461457784, 0.6198217094913476], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PhoU.gap.json b/pfam_gap_rates/PhoU.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..eeccde54d56fa31fdda65c883e4d647109be8897
--- /dev/null
+++ b/pfam_gap_rates/PhoU.gap.json
@@ -0,0 +1 @@
+{"family": "PhoU", "n_seqs": 5000, "length": 91, "gap_rates": [0.6426, 0.311, 0.1746, 0.0962, 0.0666, 0.0468, 0.0366, 0.0258, 0.0216, 0.019, 0.0166, 0.0148, 0.0142, 0.0134, 0.0124, 0.012, 0.0116, 0.011, 0.0118, 0.0116, 0.0106, 0.0108, 0.012, 0.0232, 0.0092, 0.007, 0.0066, 0.0044, 0.0038, 0.0036, 0.0068, 0.0056, 0.0042, 0.0018, 0.0012, 0.0012, 0.001, 0.001, 0.001, 0.0008, 0.001, 0.0008, 0.0008, 0.0006, 0.0046, 0.0038, 0.0032, 0.0596, 0.0108, 0.0194, 0.0136, 0.012, 0.0666, 0.073, 0.9432, 0.0724, 0.0428, 0.0466, 0.1642, 0.338, 0.3838, 0.9452, 0.3216, 0.095, 0.0676, 0.03, 0.0392, 0.0426, 0.0388, 0.0056, 0.0038, 0.0034, 0.0028, 0.0028, 0.0026, 0.0026, 0.0026, 0.0026, 0.0028, 0.0028, 0.003, 0.0032, 0.004, 0.0084, 0.018, 0.026, 0.0326, 0.0518, 0.1084, 0.2302, 0.755], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Piezo_RRas_bdg.gap.json b/pfam_gap_rates/Piezo_RRas_bdg.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..9e0e3fab1c98b5ba033370088af6bd94aba0472f
--- /dev/null
+++ b/pfam_gap_rates/Piezo_RRas_bdg.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Pilin_GH.gap.json b/pfam_gap_rates/Pilin_GH.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..5e2b0fb741078a1d8c929c7ee3ebfef73d34cd7a
--- /dev/null
+++ b/pfam_gap_rates/Pilin_GH.gap.json
@@ -0,0 +1 @@
+{"family": "Pilin_GH", "n_seqs": 142, "length": 155, "gap_rates": [0.39436619718309857, 0.18309859154929578, 0.09154929577464789, 0.056338028169014086, 0.04225352112676056, 0.04225352112676056, 0.035211267605633804, 0.028169014084507043, 0.028169014084507043, 0.02112676056338028, 0.02112676056338028, 0.014084507042253521, 0.014084507042253521, 0.007042253521126761, 0.007042253521126761, 0.007042253521126761, 0.007042253521126761, 0.007042253521126761, 0.007042253521126761, 0.007042253521126761, 0.007042253521126761, 0.007042253521126761, 0.007042253521126761, 0.007042253521126761, 0.007042253521126761, 0.007042253521126761, 0.8873239436619719, 0.9084507042253521, 0.8873239436619719, 0.028169014084507043, 0.014084507042253521, 0.014084507042253521, 0.007042253521126761, 0.007042253521126761, 0.007042253521126761, 0.8943661971830986, 0.02112676056338028, 0.028169014084507043, 0.014084507042253521, 0.014084507042253521, 0.09859154929577464, 0.04929577464788732, 0.02112676056338028, 0.9436619718309859, 0.9225352112676056, 0.11267605633802817, 0.04225352112676056, 0.014084507042253521, 0.02112676056338028, 0.02112676056338028, 0.007042253521126761, 0.8661971830985915, 0.8943661971830986, 0.9225352112676056, 0.9436619718309859, 0.9436619718309859, 0.9225352112676056, 0.9225352112676056, 0.8802816901408451, 0.8380281690140845, 0.007042253521126761, 0.04929577464788732, 0.04225352112676056, 0.04225352112676056, 0.04225352112676056, 0.04929577464788732, 0.056338028169014086, 0.29577464788732394, 0.36619718309859156, 0.795774647887324, 0.8943661971830986, 0.9366197183098591, 0.9436619718309859, 0.9436619718309859, 0.9436619718309859, 0.9154929577464789, 0.8661971830985915, 0.5985915492957746, 0.014084507042253521, 0.028169014084507043, 0.035211267605633804, 0.035211267605633804, 0.035211267605633804, 0.035211267605633804, 0.056338028169014086, 0.056338028169014086, 0.028169014084507043, 0.8098591549295775, 0.8802816901408451, 0.9084507042253521, 0.9295774647887324, 0.9154929577464789, 0.8943661971830986, 0.8309859154929577, 0.7253521126760564, 0.028169014084507043, 0.035211267605633804, 0.028169014084507043, 0.035211267605633804, 0.035211267605633804, 0.035211267605633804, 0.035211267605633804, 0.035211267605633804, 0.035211267605633804, 0.035211267605633804, 0.04225352112676056, 0.04929577464788732, 0.04929577464788732, 0.056338028169014086, 0.06338028169014084, 0.06338028169014084, 0.06338028169014084, 0.7535211267605634, 0.9366197183098591, 0.8732394366197183, 0.5845070422535211, 0.4154929577464789, 0.38028169014084506, 0.31690140845070425, 0.22535211267605634, 0.09859154929577464, 0.1056338028169014, 0.1056338028169014, 0.1056338028169014, 0.11267605633802817, 0.11971830985915492, 0.13380281690140844, 0.13380281690140844, 0.14084507042253522, 0.14084507042253522, 0.13380281690140844, 0.14788732394366197, 0.15492957746478872, 0.1619718309859155, 0.176056338028169, 0.9154929577464789, 0.9295774647887324, 0.8802816901408451, 0.2323943661971831, 0.22535211267605634, 0.2605633802816901, 0.28169014084507044, 0.30985915492957744, 0.352112676056338, 0.36619718309859156, 0.4084507042253521, 0.4225352112676056, 0.8309859154929577, 0.8661971830985915, 0.7676056338028169, 0.5140845070422535, 0.5070422535211268, 0.5070422535211268, 0.5070422535211268, 0.647887323943662], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Pirin.gap.json b/pfam_gap_rates/Pirin.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..8c3b5493524b299adbada1294dcc6f78c564d977
--- /dev/null
+++ b/pfam_gap_rates/Pirin.gap.json
@@ -0,0 +1 @@
+{"family": "Pirin", "n_seqs": 2311, "length": 120, "gap_rates": [0.7602769363911727, 0.6343574210298571, 0.5382951103418434, 0.4712245781047166, 0.4123755949805279, 0.36434443963652097, 0.309822587624405, 0.2591951536131545, 0.1934227607096495, 0.8113370835136304, 0.7996538295110341, 0.6313284292514063, 0.14063176114236262, 0.12202509736045002, 0.10861099091302466, 0.10471657291215924, 0.09995672868887927, 0.09476417135439204, 0.09216789268714842, 0.09043704024231934, 0.08870618779749026, 0.088273474686283, 0.08740804846386846, 0.08697533535266118, 0.08524448290783211, 0.08437905668541756, 0.0839463435742103, 0.08351363046300303, 0.14019904803115535, 0.14063176114236262, 0.14149718736477715, 0.13024664647338816, 0.2972739073993942, 0.2959757680657724, 0.29684119428818695, 0.29337948939852876, 0.6750324534833405, 0.6763305928169624, 0.6797922977066205, 0.6754651665945478, 0.6728688879273041, 0.4980527909995673, 0.5006490696668109, 0.4738208567719602, 0.447858070099524, 0.6681090437040242, 0.6538295110341843, 0.264820424058849, 0.028991778450887063, 0.01947209000432713, 0.013414106447425357, 0.011683254002596278, 0.011683254002596278, 0.011683254002596278, 0.01125054089138901, 0.01038511466897447, 0.009519688446559932, 0.009086975335352661, 0.007788836001730853, 0.008221549112938122, 0.007788836001730853, 0.0073561228905235825, 0.0073561228905235825, 0.006490696668109044, 0.006057983556901774, 0.006057983556901774, 0.005192557334487235, 0.005625270445694505, 0.006490696668109044, 0.005625270445694505, 0.005625270445694505, 0.006057983556901774, 0.006490696668109044, 0.006923409779316313, 0.007788836001730853, 0.00865426222414539, 0.00865426222414539, 0.00865426222414539, 0.00865426222414539, 0.0073561228905235825, 0.005625270445694505, 0.004759844223279966, 0.004759844223279966, 0.005192557334487235, 0.006490696668109044, 0.006490696668109044, 0.006057983556901774, 0.006923409779316313, 0.006490696668109044, 0.006923409779316313, 0.006923409779316313, 0.006923409779316313, 0.007788836001730853, 0.00865426222414539, 0.00865426222414539, 0.009086975335352661, 0.009519688446559932, 0.009519688446559932, 0.0099524015577672, 0.0099524015577672, 0.010817827780181739, 0.01125054089138901, 0.011683254002596278, 0.012548680225010819, 0.025962786672436174, 0.6516659454781479, 0.7135439203807875, 0.6975335352661186, 0.5889225443530939, 0.22371267849415838, 0.03504976200778884, 0.023366508005192556, 0.016875811337083515, 0.016875811337083515, 0.016443098225876245, 0.016875811337083515, 0.01730852444829078, 0.018173950670705322, 0.02077022933794894, 0.14409346603202078], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Polyketide_cyc2.gap.json b/pfam_gap_rates/Polyketide_cyc2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..014e26bcac0a083c150388aae87a7c28c7bdbd0d
--- /dev/null
+++ b/pfam_gap_rates/Polyketide_cyc2.gap.json
@@ -0,0 +1 @@
+{"family": "Polyketide_cyc2", "n_seqs": 2846, "length": 179, "gap_rates": [0.8738580463808855, 0.6848208011243851, 0.4669711876317639, 0.34680252986647925, 0.25263527758257204, 0.19255094869992972, 0.1482782853127196, 0.10962754743499649, 0.07203092059030218, 0.05551651440618412, 0.04181307097680956, 0.03162333099086437, 0.024947294448348558, 0.020028109627547436, 0.018622628250175684, 0.017217146872803936, 0.01651440618411806, 0.015811665495432184, 0.015108924806746311, 0.014757554462403373, 0.013703443429374561, 0.014054813773717497, 0.014406184118060435, 0.02635277582572031, 0.015460295151089248, 0.015460295151089248, 0.014406184118060435, 0.013352073085031623, 0.05727336612789881, 0.022839072382290933, 0.9374560787069571, 0.9223471539002108, 0.014054813773717497, 0.012297962052002811, 0.9388615600843289, 0.022839072382290933, 0.013000702740688685, 0.012649332396345749, 0.03443429374560787, 0.022487702037947997, 0.07062543921293044, 0.025650035137034434, 0.018973998594518624, 0.06324666198172874, 0.9121574139142656, 0.7698524244553759, 0.40372452565003514, 0.045326774420238934, 0.02213633169360506, 0.024947294448348558, 0.38791286015460297, 0.7238229093464511, 0.9033731553056922, 0.9430780042164442, 0.8134223471539002, 0.6300070274068869, 0.3770203794799719, 0.11033028812368235, 0.10260014054813774, 0.29620520028109626, 0.0421644413211525, 0.022487702037947997, 0.023893183415319746, 0.030217849613492623, 0.8007730147575545, 0.030920590302178495, 0.03900210822206606, 0.05130007027406887, 0.24420238931834154, 0.567463106113844, 0.8222066057624736, 0.9135628952916374, 0.9444834855938159, 0.8745607870695713, 0.7199578355586789, 0.38229093464511593, 0.06605762473647224, 0.06324666198172874, 0.014406184118060435, 0.007378777231201687, 0.008081517919887562, 0.008432888264230498, 0.008784258608573436, 0.008081517919887562, 0.008784258608573436, 0.013703443429374561, 0.018622628250175684, 0.9044272663387211, 0.030217849613492623, 0.9290231904427266, 0.5323260716795503, 0.04813773717498243, 0.013000702740688685, 0.01089248067463106, 0.007378777231201687, 0.006324666198172874, 0.007027406886858749, 0.007730147575544624, 0.009838369641602248, 0.9448348559381589, 0.9279690794096979, 0.21503865073787773, 0.8250175685172172, 0.9181307097680955, 0.5161630358397751, 0.40653548840477866, 0.23858046380885453, 0.08608573436401967, 0.059732958538299366, 0.05938158819395643, 0.029515108924806747, 0.1651440618411806, 0.084328882642305, 0.9444834855938159, 0.02354181307097681, 0.013000702740688685, 0.013352073085031623, 0.013352073085031623, 0.014406184118060435, 0.013703443429374561, 0.014054813773717497, 0.014406184118060435, 0.9465917076598735, 0.016865776528460996, 0.020028109627547436, 0.8534785664089951, 0.02073085031623331, 0.02600140548137737, 0.8506676036542515, 0.949051300070274, 0.9058327477160928, 0.6226282501756851, 0.02213633169360506, 0.025298664792691498, 0.024244553759662685, 0.02354181307097681, 0.025650035137034434, 0.028109627547434995, 0.02775825720309206, 0.0881939564300773, 0.07800421644413212, 0.06605762473647224, 0.19501054111033028, 0.8394237526352776, 0.9416725228390724, 0.9125087842586086, 0.6619817287420942, 0.4409697821503865, 0.33345045678144764, 0.2354181307097681, 0.21855235418130708, 0.12227687983134224, 0.12333099086437105, 0.18271257905832747, 0.3404778636683064, 0.19465917076598735, 0.17076598735066761, 0.1837666900913563, 0.15917076598735067, 0.1493323963457484, 0.14054813773717498, 0.13633169360505973, 0.13562895291637386, 0.13843991567111735, 0.1416022487702038, 0.15917076598735067, 0.16163035839775122, 0.16830639494026703, 0.17498243148278286, 0.1837666900913563, 0.19009135628952917, 0.19922698524244553, 0.21152494729444835, 0.22382290934645116, 0.25298664792691494, 0.29585382993675335, 0.3696416022487702, 0.44905130007027405, 0.6047083626141954], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Potass_KdpF.gap.json b/pfam_gap_rates/Potass_KdpF.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..2810a61397d0a8d44fee0571701ee7a86d227534
--- /dev/null
+++ b/pfam_gap_rates/Potass_KdpF.gap.json
@@ -0,0 +1 @@
+{"family": "Potass_KdpF", "n_seqs": 177, "length": 24, "gap_rates": [0.3050847457627119, 0.1016949152542373, 0.07344632768361582, 0.02824858757062147, 0.011299435028248588, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.005649717514124294, 0.011299435028248588, 0.05649717514124294, 0.15819209039548024], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Pox_D5.gap.json b/pfam_gap_rates/Pox_D5.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..69a60163301ae445fae608cf73dc1901aae17630
--- /dev/null
+++ b/pfam_gap_rates/Pox_D5.gap.json
@@ -0,0 +1 @@
+{"family": "Pox_D5", "n_seqs": 401, "length": 97, "gap_rates": [0.8603491271820449, 0.6259351620947631, 0.6109725685785536, 0.5860349127182045, 0.5785536159600998, 0.571072319201995, 0.5685785536159601, 0.5685785536159601, 0.5660847880299252, 0.5660847880299252, 0.5660847880299252, 0.5660847880299252, 0.5660847880299252, 0.5635910224438903, 0.5635910224438903, 0.6209476309226932, 0.5885286783042394, 0.9276807980049875, 0.942643391521197, 0.9351620947630923, 0.9152119700748129, 0.36159600997506236, 0.34413965087281795, 0.3341645885286783, 0.3167082294264339, 0.16708229426433915, 0.12468827930174564, 0.0024937655860349127, 0.8079800498753117, 0.7930174563591023, 0.0024937655860349127, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.940149625935162, 0.8528678304239401, 0.0, 0.0, 0.0, 0.0024937655860349127, 0.004987531172069825, 0.004987531172069825, 0.004987531172069825, 0.00997506234413965, 0.00997506234413965, 0.0199501246882793, 0.032418952618453865, 0.07231920199501247, 0.10473815461346633, 0.15211970074812967, 0.20947630922693267, 0.22194513715710723, 0.3940149625935162, 0.940149625935162, 0.35910224438902744, 0.2817955112219451, 0.9376558603491272, 0.9476309226932669, 0.4014962593516209, 0.2344139650872818, 0.22942643391521197, 0.23192019950124687, 0.23690773067331672, 0.2892768079800499, 0.7780548628428927, 0.7955112219451371, 0.8354114713216958, 0.8453865336658354, 0.8628428927680798, 0.8778054862842892, 0.8827930174563591, 0.885286783042394, 0.8877805486284289, 0.8952618453865336, 0.9052369077306733, 0.9052369077306733, 0.9152119700748129, 0.9226932668329177, 0.9226932668329177, 0.940149625935162, 0.9326683291770573, 0.9301745635910225, 0.9351620947630923], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Prefoldin.gap.json b/pfam_gap_rates/Prefoldin.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..2671d8581ec53726fcdac5c481d1b052b128f58c
--- /dev/null
+++ b/pfam_gap_rates/Prefoldin.gap.json
@@ -0,0 +1 @@
+{"family": "Prefoldin", "n_seqs": 1066, "length": 128, "gap_rates": [0.624765478424015, 0.4146341463414634, 0.350844277673546, 0.2898686679174484, 0.24390243902439024, 0.2129455909943715, 0.18667917448405252, 0.17448405253283303, 0.1622889305816135, 0.15478424015009382, 0.1472795497185741, 0.1397748592870544, 0.13133208255159476, 0.124765478424015, 0.11726078799249531, 0.1125703564727955, 0.10318949343339587, 0.09849906191369606, 0.09568480300187618, 0.09193245778611632, 0.08724202626641651, 0.08536585365853659, 0.08442776735459662, 0.08161350844277673, 0.07692307692307693, 0.07598499061913697, 0.075046904315197, 0.07410881801125703, 0.07692307692307693, 0.07692307692307693, 0.07598499061913697, 0.07317073170731707, 0.07129455909943715, 0.06660412757973734, 0.648217636022514, 0.8649155722326454, 0.9127579737335835, 0.9455909943714822, 0.9343339587242027, 0.8893058161350844, 0.6772983114446529, 0.5065666041275797, 0.2598499061913696, 0.08818011257035648, 0.07598499061913697, 0.055347091932457786, 0.05065666041275797, 0.04596622889305816, 0.04409005628517824, 0.036585365853658534, 0.03564727954971857, 0.0375234521575985, 0.036585365853658534, 0.036585365853658534, 0.03470919324577861, 0.03564727954971857, 0.0300187617260788, 0.03095684803001876, 0.025328330206378986, 0.024390243902439025, 0.021575984990619138, 0.021575984990619138, 0.021575984990619138, 0.0300187617260788, 0.016885553470919325, 0.013133208255159476, 0.012195121951219513, 0.014071294559099437, 0.014071294559099437, 0.013133208255159476, 0.014071294559099437, 0.014071294559099437, 0.0150093808630394, 0.0150093808630394, 0.0150093808630394, 0.01594746716697936, 0.01594746716697936, 0.014071294559099437, 0.0150093808630394, 0.01594746716697936, 0.01594746716697936, 0.01876172607879925, 0.017823639774859287, 0.017823639774859287, 0.01594746716697936, 0.016885553470919325, 0.01876172607879925, 0.019699812382739212, 0.019699812382739212, 0.019699812382739212, 0.020637898686679174, 0.020637898686679174, 0.024390243902439025, 0.025328330206378986, 0.028142589118198873, 0.03095684803001876, 0.03564727954971857, 0.036585365853658534, 0.038461538461538464, 0.038461538461538464, 0.040337711069418386, 0.043151969981238276, 0.0450281425891182, 0.0450281425891182, 0.04596622889305816, 0.05065666041275797, 0.05909943714821764, 0.06660412757973734, 0.075046904315197, 0.07786116322701689, 0.08161350844277673, 0.08724202626641651, 0.09287054409005628, 0.09849906191369606, 0.11163227016885553, 0.12664165103189493, 0.15103189493433397, 0.17166979362101314, 0.20075046904315197, 0.2270168855534709, 0.2654784240150094, 0.28236397748592873, 0.3076923076923077, 0.3348968105065666, 0.3724202626641651, 0.4849906191369606, 0.5947467166979362, 0.775797373358349], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Pribosyltran_N.gap.json b/pfam_gap_rates/Pribosyltran_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..05bcd0fc760e0f0e5381eb977c5b3f6758837c71
--- /dev/null
+++ b/pfam_gap_rates/Pribosyltran_N.gap.json
@@ -0,0 +1 @@
+{"family": "Pribosyltran_N", "n_seqs": 3397, "length": 145, "gap_rates": [0.4439211068589932, 0.15543126287901088, 0.09037385928760672, 0.08419193405946424, 0.07859876361495437, 0.07212246099499559, 0.0694730644686488, 0.06505740359140418, 0.06152487488960848, 0.058286723579629086, 0.05504857226964969, 0.05239917574330291, 0.050338534000588755, 0.049749779216956135, 0.04768913747424198, 0.046511627906976744, 0.04445098616426259, 0.04386223138062997, 0.04327347659699735, 0.0415072122460995, 0.9078598763614955, 0.9099205181042096, 0.913158669414189, 0.936120105975861, 0.9393582572858404, 0.945540182513983, 0.9496614659994113, 0.9399470120694731, 0.9364144833676774, 0.929349425964086, 0.9108036502796585, 0.9099205181042096, 0.8949072711215779, 0.03738592876067118, 0.03650279658522226, 0.03532528701795702, 0.03297026788342655, 0.03149838092434501, 0.027965852222549308, 0.026788342655284073, 0.026493965263467766, 0.02561083308801884, 0.02384456873712099, 0.022372681778039447, 0.02178392699440683, 0.021195172210774212, 0.020606417427141595, 0.01972328525169267, 0.01972328525169267, 0.019134530468060053, 0.01825139829261113, 0.017073888725345893, 0.0173682661171622, 0.016485133941713276, 0.01766264350897851, 0.017957020900794818, 0.021195172210774212, 0.020017662643508977, 0.020606417427141595, 0.020017662643508977, 0.020900794818957905, 0.018545775684427435, 0.017073888725345893, 0.01825139829261113, 0.019134530468060053, 0.017957020900794818, 0.017073888725345893, 0.0173682661171622, 0.01766264350897851, 0.018840153076243746, 0.8722402119517221, 0.890197232852517, 0.9196349720341478, 0.9231675007359434, 0.9267000294377392, 0.9275831616131881, 0.9281719163968207, 0.9275831616131881, 0.9275831616131881, 0.9240506329113924, 0.9225787459523108, 0.9149249337650869, 0.8819546658816603, 0.833971151015602, 0.0173682661171622, 0.01825139829261113, 0.1342360906682367, 0.058286723579629086, 0.014718869590815425, 0.015307624374448043, 0.013246982631733883, 0.009420076538121873, 0.00971445392993818, 0.009420076538121873, 0.00971445392993818, 0.00971445392993818, 0.0073594347954077126, 0.007653812187224021, 0.007653812187224021, 0.008242566970856638, 0.007653812187224021, 0.011775095672652341, 0.07506623491315867, 0.013541360023550192, 0.010891963497203415, 0.00971445392993818, 0.008536944362672947, 0.008536944362672947, 0.009125699146305564, 0.00971445392993818, 0.009420076538121873, 0.00971445392993818, 0.00971445392993818, 0.00971445392993818, 0.00971445392993818, 0.010303208713570797, 0.009420076538121873, 0.00971445392993818, 0.00971445392993818, 0.010303208713570797, 0.010597586105387106, 0.014130114807182808, 0.027082720047100384, 0.038269060936120106, 0.1763320576979688, 0.04268472181336473, 0.04386223138062997, 0.8984397998233735, 0.048866647041507214, 0.04945540182513983, 0.05004415660877245, 0.049749779216956135, 0.05063291139240506, 0.05092728878422137, 0.05122166617603768, 0.0518104209596703, 0.052693553135119225, 0.05416544009420077, 0.05475419487783338, 0.055931704445098616, 0.058286723579629086, 0.06682366794230203, 0.10420959670297321, 0.14071239328819546, 0.14807182808360317], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Propep_M14.gap.json b/pfam_gap_rates/Propep_M14.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..47da3d2615b90bf718cb6bd73460bae1c68e4589
--- /dev/null
+++ b/pfam_gap_rates/Propep_M14.gap.json
@@ -0,0 +1 @@
+{"family": "Propep_M14", "n_seqs": 554, "length": 81, "gap_rates": [0.6046931407942239, 0.30324909747292417, 0.2779783393501805, 0.26353790613718414, 0.2490974729241877, 0.2490974729241877, 0.24007220216606498, 0.2364620938628159, 0.22382671480144403, 0.2184115523465704, 0.20397111913357402, 0.18411552346570398, 0.17328519855595667, 0.1588447653429603, 0.1588447653429603, 0.15342960288808663, 0.14259927797833935, 0.1407942238267148, 0.9458483754512635, 0.15342960288808663, 0.13357400722021662, 0.14259927797833935, 0.09025270758122744, 0.7310469314079422, 0.8898916967509025, 0.5288808664259927, 0.04512635379061372, 0.030685920577617327, 0.02707581227436823, 0.02707581227436823, 0.02707581227436823, 0.0776173285198556, 0.09025270758122744, 0.11913357400722022, 0.8664259927797834, 0.8736462093862816, 0.8700361010830325, 0.851985559566787, 0.11371841155234658, 0.03790613718411552, 0.032490974729241874, 0.03429602888086643, 0.02527075812274368, 0.01263537906137184, 0.01263537906137184, 0.010830324909747292, 0.0018050541516245488, 0.0018050541516245488, 0.005415162454873646, 0.007220216606498195, 0.007220216606498195, 0.005415162454873646, 0.005415162454873646, 0.007220216606498195, 0.009025270758122744, 0.009025270758122744, 0.009025270758122744, 0.009025270758122744, 0.03790613718411552, 0.03790613718411552, 0.01263537906137184, 0.021660649819494584, 0.019855595667870037, 0.01444043321299639, 0.01444043321299639, 0.023465703971119134, 0.023465703971119134, 0.016245487364620937, 0.021660649819494584, 0.023465703971119134, 0.02888086642599278, 0.03429602888086643, 0.03429602888086643, 0.03429602888086643, 0.039711191335740074, 0.05054151624548736, 0.06859205776173286, 0.07942238267148015, 0.1588447653429603, 0.2581227436823105, 0.40613718411552346], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Prot_ATP_ID_OB.gap.json b/pfam_gap_rates/Prot_ATP_ID_OB.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..8591a906c8fb9b0161b78ce012916f45d518dc4d
--- /dev/null
+++ b/pfam_gap_rates/Prot_ATP_ID_OB.gap.json
@@ -0,0 +1 @@
+{"family": "Prot_ATP_ID_OB", "n_seqs": 220, "length": 153, "gap_rates": [0.5545454545454546, 0.25, 0.19545454545454546, 0.17272727272727273, 0.16818181818181818, 0.16818181818181818, 0.1590909090909091, 0.1409090909090909, 0.11363636363636363, 0.11363636363636363, 0.8409090909090909, 0.07272727272727272, 0.06363636363636363, 0.05, 0.05, 0.045454545454545456, 0.045454545454545456, 0.045454545454545456, 0.045454545454545456, 0.045454545454545456, 0.045454545454545456, 0.045454545454545456, 0.045454545454545456, 0.045454545454545456, 0.045454545454545456, 0.045454545454545456, 0.045454545454545456, 0.05, 0.045454545454545456, 0.05, 0.05, 0.05, 0.045454545454545456, 0.05454545454545454, 0.05, 0.05, 0.05, 0.05, 0.05, 0.05, 0.05, 0.05, 0.05, 0.05, 0.05, 0.05, 0.05, 0.05, 0.05, 0.045454545454545456, 0.045454545454545456, 0.045454545454545456, 0.045454545454545456, 0.045454545454545456, 0.045454545454545456, 0.045454545454545456, 0.045454545454545456, 0.045454545454545456, 0.045454545454545456, 0.045454545454545456, 0.045454545454545456, 0.045454545454545456, 0.045454545454545456, 0.04090909090909091, 0.03636363636363636, 0.022727272727272728, 0.01818181818181818, 0.01818181818181818, 0.01818181818181818, 0.01818181818181818, 0.013636363636363636, 0.013636363636363636, 0.013636363636363636, 0.9181818181818182, 0.9181818181818182, 0.95, 0.9181818181818182, 0.9181818181818182, 0.5136363636363637, 0.02727272727272727, 0.013636363636363636, 0.013636363636363636, 0.013636363636363636, 0.013636363636363636, 0.00909090909090909, 0.00909090909090909, 0.00909090909090909, 0.00909090909090909, 0.013636363636363636, 0.00909090909090909, 0.00909090909090909, 0.00909090909090909, 0.00909090909090909, 0.00909090909090909, 0.00909090909090909, 0.00909090909090909, 0.00909090909090909, 0.00909090909090909, 0.013636363636363636, 0.00909090909090909, 0.00909090909090909, 0.00909090909090909, 0.05454545454545454, 0.7954545454545454, 0.8545454545454545, 0.8681818181818182, 0.8909090909090909, 0.9136363636363637, 0.9181818181818182, 0.9227272727272727, 0.9454545454545454, 0.9409090909090909, 0.9227272727272727, 0.9181818181818182, 0.9, 0.8772727272727273, 0.8681818181818182, 0.8272727272727273, 0.7909090909090909, 0.022727272727272728, 0.022727272727272728, 0.01818181818181818, 0.01818181818181818, 0.01818181818181818, 0.01818181818181818, 0.01818181818181818, 0.01818181818181818, 0.02727272727272727, 0.02727272727272727, 0.031818181818181815, 0.02727272727272727, 0.02727272727272727, 0.02727272727272727, 0.02727272727272727, 0.02727272727272727, 0.02727272727272727, 0.02727272727272727, 0.02727272727272727, 0.02727272727272727, 0.02727272727272727, 0.02727272727272727, 0.02727272727272727, 0.03636363636363636, 0.04090909090909091, 0.045454545454545456, 0.05454545454545454, 0.05454545454545454, 0.05454545454545454, 0.06363636363636363, 0.07727272727272727, 0.08181818181818182, 0.08636363636363636, 0.16363636363636364], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PsbY.gap.json b/pfam_gap_rates/PsbY.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..043c1d7b790a1ca575e073e362ae711fe32a73d1
--- /dev/null
+++ b/pfam_gap_rates/PsbY.gap.json
@@ -0,0 +1 @@
+{"family": "PsbY", "n_seqs": 160, "length": 35, "gap_rates": [0.64375, 0.08125, 0.05, 0.05, 0.04375, 0.04375, 0.0375, 0.03125, 0.0125, 0.0125, 0.0125, 0.00625, 0.00625, 0.00625, 0.00625, 0.00625, 0.00625, 0.00625, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.01875, 0.04375, 0.04375, 0.04375, 0.04375, 0.04375, 0.05, 0.05, 0.0625, 0.125, 0.78125], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PsiE.gap.json b/pfam_gap_rates/PsiE.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f7a3ce00034e47d1feab5a0b9ed7dc9ad464da18
--- /dev/null
+++ b/pfam_gap_rates/PsiE.gap.json
@@ -0,0 +1 @@
+{"family": "PsiE", "n_seqs": 525, "length": 71, "gap_rates": [0.3904761904761905, 0.15047619047619049, 0.07238095238095238, 0.03238095238095238, 0.02095238095238095, 0.011428571428571429, 0.007619047619047619, 0.005714285714285714, 0.0038095238095238095, 0.0038095238095238095, 0.0038095238095238095, 0.0038095238095238095, 0.0038095238095238095, 0.0019047619047619048, 0.0019047619047619048, 0.0019047619047619048, 0.0019047619047619048, 0.11047619047619048, 0.005714285714285714, 0.0019047619047619048, 0.007619047619047619, 0.005714285714285714, 0.0019047619047619048, 0.0019047619047619048, 0.9428571428571428, 0.7847619047619048, 0.011428571428571429, 0.005714285714285714, 0.0019047619047619048, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0019047619047619048, 0.0019047619047619048, 0.0019047619047619048, 0.0019047619047619048, 0.0019047619047619048, 0.0019047619047619048, 0.0019047619047619048, 0.0019047619047619048, 0.0019047619047619048, 0.0019047619047619048, 0.0019047619047619048, 0.0019047619047619048, 0.0019047619047619048, 0.0038095238095238095, 0.8990476190476191, 0.41904761904761906, 0.25142857142857145, 0.13523809523809524, 0.015238095238095238, 0.011428571428571429, 0.013333333333333334, 0.01904761904761905, 0.01904761904761905, 0.01904761904761905, 0.01904761904761905, 0.01904761904761905, 0.01904761904761905, 0.01904761904761905, 0.01904761904761905, 0.02095238095238095, 0.022857142857142857, 0.024761904761904763, 0.02666666666666667, 0.04, 0.07809523809523809, 0.1219047619047619, 0.34095238095238095], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PyrI.gap.json b/pfam_gap_rates/PyrI.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b08187657f85f07c0bcef4bb8414b0ef6df75f8e
--- /dev/null
+++ b/pfam_gap_rates/PyrI.gap.json
@@ -0,0 +1 @@
+{"family": "PyrI", "n_seqs": 426, "length": 94, "gap_rates": [0.2863849765258216, 0.04460093896713615, 0.014084507042253521, 0.014084507042253521, 0.011737089201877934, 0.011737089201877934, 0.011737089201877934, 0.011737089201877934, 0.011737089201877934, 0.011737089201877934, 0.011737089201877934, 0.011737089201877934, 0.009389671361502348, 0.009389671361502348, 0.009389671361502348, 0.009389671361502348, 0.009389671361502348, 0.009389671361502348, 0.009389671361502348, 0.009389671361502348, 0.007042253521126761, 0.007042253521126761, 0.007042253521126761, 0.007042253521126761, 0.007042253521126761, 0.007042253521126761, 0.007042253521126761, 0.007042253521126761, 0.007042253521126761, 0.007042253521126761, 0.014084507042253521, 0.284037558685446, 0.14553990610328638, 0.018779342723004695, 0.1056338028169014, 0.7089201877934272, 0.5845070422535211, 0.014084507042253521, 0.004694835680751174, 0.004694835680751174, 0.004694835680751174, 0.007042253521126761, 0.011737089201877934, 0.011737089201877934, 0.007042253521126761, 0.007042253521126761, 0.007042253521126761, 0.023474178403755867, 0.028169014084507043, 0.028169014084507043, 0.007042253521126761, 0.007042253521126761, 0.007042253521126761, 0.007042253521126761, 0.007042253521126761, 0.007042253521126761, 0.007042253521126761, 0.007042253521126761, 0.007042253521126761, 0.3826291079812207, 0.09154929577464789, 0.023474178403755867, 0.21830985915492956, 0.009389671361502348, 0.004694835680751174, 0.004694835680751174, 0.002347417840375587, 0.002347417840375587, 0.002347417840375587, 0.002347417840375587, 0.002347417840375587, 0.002347417840375587, 0.002347417840375587, 0.002347417840375587, 0.002347417840375587, 0.002347417840375587, 0.002347417840375587, 0.002347417840375587, 0.002347417840375587, 0.002347417840375587, 0.002347417840375587, 0.002347417840375587, 0.002347417840375587, 0.002347417840375587, 0.002347417840375587, 0.002347417840375587, 0.002347417840375587, 0.002347417840375587, 0.004694835680751174, 0.004694835680751174, 0.004694835680751174, 0.028169014084507043, 0.15258215962441316, 0.863849765258216], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/PyrI_C.gap.json b/pfam_gap_rates/PyrI_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..1ceab023d574c26be8facc45ef7d7b360e101a1a
--- /dev/null
+++ b/pfam_gap_rates/PyrI_C.gap.json
@@ -0,0 +1 @@
+{"family": "PyrI_C", "n_seqs": 460, "length": 52, "gap_rates": [0.55, 0.11304347826086956, 0.08043478260869565, 0.06521739130434782, 0.06086956521739131, 0.03260869565217391, 0.006521739130434782, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.9282608695652174, 0.8, 0.0, 0.5565217391304348, 0.002173913043478261, 0.002173913043478261, 0.0, 0.0, 0.0, 0.0, 0.0, 0.11739130434782609, 0.808695652173913, 0.12173913043478261, 0.05434782608695652, 0.008695652173913044, 0.015217391304347827, 0.03260869565217391, 0.030434782608695653, 0.01956521739130435, 0.002173913043478261, 0.002173913043478261, 0.002173913043478261, 0.002173913043478261, 0.002173913043478261, 0.002173913043478261, 0.002173913043478261, 0.008695652173913044, 0.03260869565217391, 0.08478260869565217, 0.1891304347826087, 0.3782608695652174, 0.5021739130434782, 0.6173913043478261, 0.7065217391304348], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Pyr_redox_dim.gap.json b/pfam_gap_rates/Pyr_redox_dim.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..590baffea6d24a3adadc08340a356bad3c147028
--- /dev/null
+++ b/pfam_gap_rates/Pyr_redox_dim.gap.json
@@ -0,0 +1 @@
+{"family": "Pyr_redox_dim", "n_seqs": 5000, "length": 116, "gap_rates": [0.3, 0.2266, 0.1834, 0.1164, 0.092, 0.07, 0.0548, 0.042, 0.0344, 0.0242, 0.0176, 0.016, 0.0146, 0.0146, 0.014, 0.014, 0.0144, 0.0144, 0.0144, 0.015, 0.0156, 0.0158, 0.0158, 0.0154, 0.0146, 0.1638, 0.1426, 0.8682, 0.825, 0.0212, 0.0146, 0.0142, 0.0144, 0.0136, 0.0142, 0.0144, 0.0146, 0.0282, 0.0228, 0.0108, 0.0104, 0.01, 0.0098, 0.0104, 0.0102, 0.0098, 0.012, 0.0334, 0.9472, 0.7678, 0.0074, 0.007, 0.0072, 0.007, 0.006, 0.0064, 0.0062, 0.0146, 0.0126, 0.0096, 0.008, 0.0866, 0.0178, 0.005, 0.0042, 0.004, 0.0036, 0.004, 0.0048, 0.0052, 0.0052, 0.0052, 0.0054, 0.8952, 0.0056, 0.0066, 0.0062, 0.0056, 0.0056, 0.0056, 0.0056, 0.0058, 0.0062, 0.0064, 0.0064, 0.0064, 0.0066, 0.0082, 0.009, 0.0082, 0.0082, 0.0086, 0.009, 0.01, 0.0102, 0.8682, 0.011, 0.0114, 0.014, 0.0152, 0.015, 0.015, 0.0164, 0.0166, 0.0176, 0.018, 0.0196, 0.022, 0.0374, 0.1212, 0.1568, 0.2006, 0.2564, 0.3286, 0.4472, 0.9154], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/QSregVF_b.gap.json b/pfam_gap_rates/QSregVF_b.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b51eaaa4fc7761f32bfac0d0249523acb8b2f35a
--- /dev/null
+++ b/pfam_gap_rates/QSregVF_b.gap.json
@@ -0,0 +1 @@
+{"family": "QSregVF_b", "n_seqs": 266, "length": 67, "gap_rates": [0.6428571428571429, 0.2894736842105263, 0.24436090225563908, 0.23684210526315788, 0.22556390977443608, 0.21804511278195488, 0.20676691729323307, 0.18796992481203006, 0.18045112781954886, 0.16165413533834586, 0.07518796992481203, 0.03759398496240601, 0.007518796992481203, 0.007518796992481203, 0.007518796992481203, 0.007518796992481203, 0.007518796992481203, 0.007518796992481203, 0.007518796992481203, 0.0037593984962406013, 0.0037593984962406013, 0.0037593984962406013, 0.0037593984962406013, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.007518796992481203, 0.007518796992481203, 0.011278195488721804, 0.022556390977443608, 0.03383458646616541, 0.08646616541353383, 0.11278195488721804, 0.9172932330827067, 0.12781954887218044, 0.13533834586466165, 0.13909774436090225, 0.16917293233082706, 0.17293233082706766, 0.17293233082706766, 0.17293233082706766, 0.17293233082706766, 0.17293233082706766, 0.17293233082706766, 0.17293233082706766, 0.17293233082706766, 0.17293233082706766, 0.17293233082706766, 0.17293233082706766, 0.17293233082706766, 0.17293233082706766, 0.17293233082706766, 0.17293233082706766, 0.18045112781954886, 0.18045112781954886, 0.18045112781954886, 0.18045112781954886, 0.18045112781954886, 0.18045112781954886, 0.18421052631578946, 0.19172932330827067, 0.24060150375939848], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/RAMPs.gap.json b/pfam_gap_rates/RAMPs.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..aaf081df92f47a20b894a6a7a936092e370cd262
--- /dev/null
+++ b/pfam_gap_rates/RAMPs.gap.json
@@ -0,0 +1 @@
+{"family": "RAMPs", "n_seqs": 1185, "length": 655, "gap_rates": [0.7535864978902953, 0.4278481012658228, 0.3620253164556962, 0.3012658227848101, 0.2776371308016878, 0.2430379746835443, 0.22953586497890296, 0.21772151898734177, 0.20928270042194091, 0.20506329113924052, 0.20337552742616033, 0.1991561181434599, 0.19240506329113924, 0.6928270042194092, 0.8042194092827004, 0.8329113924050633, 0.8573839662447258, 0.8717299578059071, 0.8759493670886076, 0.880168776371308, 0.8835443037974684, 0.8860759493670886, 0.8936708860759494, 0.8945147679324894, 0.90042194092827, 0.9012658227848102, 0.9046413502109705, 0.9054852320675105, 0.9080168776371308, 0.9080168776371308, 0.909704641350211, 0.909704641350211, 0.909704641350211, 0.909704641350211, 0.909704641350211, 0.909704641350211, 0.909704641350211, 0.909704641350211, 0.909704641350211, 0.909704641350211, 0.909704641350211, 0.9105485232067511, 0.9113924050632911, 0.9113924050632911, 0.9122362869198313, 0.9139240506329114, 0.9172995780590717, 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\ No newline at end of file
diff --git a/pfam_gap_rates/RBFA.gap.json b/pfam_gap_rates/RBFA.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..14bd4129205a0e2b588d1bb38eb676334901579e
--- /dev/null
+++ b/pfam_gap_rates/RBFA.gap.json
@@ -0,0 +1 @@
+{"family": "RBFA", "n_seqs": 2173, "length": 114, "gap_rates": [0.2222733548090198, 0.12287160607455132, 0.06626783248964566, 0.05154164749194662, 0.03727565577542568, 0.028531983433041877, 0.02577082374597331, 0.02393005062126093, 0.019328117809479982, 0.018867924528301886, 0.017487344684767602, 0.016106764841233318, 0.014265991716520939, 0.013345605154164749, 0.013345605154164749, 0.012885411872986655, 0.012425218591808559, 0.878508973768983, 0.10952600092038656, 0.03681546249424758, 0.03727565577542568, 0.022549470777726646, 0.02393005062126093, 0.027151403589507593, 0.024390243902439025, 0.028531983433041877, 0.02300966405890474, 0.9282098481362172, 0.28992176714219975, 0.3170731707317073, 0.8338702254947078, 0.0050621260929590425, 0.004601932811780948, 0.004601932811780948, 0.0041417395306028535, 0.0041417395306028535, 0.0036815462494247586, 0.0036815462494247586, 0.0032213529682466636, 0.0032213529682466636, 0.0032213529682466636, 0.0032213529682466636, 0.0036815462494247586, 0.0027611596870685687, 0.002300966405890474, 0.002300966405890474, 0.0018407731247123793, 0.0018407731247123793, 0.0018407731247123793, 0.0018407731247123793, 0.0018407731247123793, 0.0018407731247123793, 0.008283479061205707, 0.009664058904739991, 0.007823285780027611, 0.09479981592268753, 0.8278877128393926, 0.9171652093879429, 0.4302807179015186, 0.02300966405890474, 0.04786010124252186, 0.0032213529682466636, 0.9489185457892315, 0.9199263690750115, 0.0027611596870685687, 0.0027611596870685687, 0.0027611596870685687, 0.002300966405890474, 0.002300966405890474, 0.002300966405890474, 0.002300966405890474, 0.0018407731247123793, 0.002300966405890474, 0.0027611596870685687, 0.0027611596870685687, 0.0027611596870685687, 0.0032213529682466636, 0.0032213529682466636, 0.0032213529682466636, 0.0036815462494247586, 0.0036815462494247586, 0.0041417395306028535, 0.0041417395306028535, 0.004601932811780948, 0.004601932811780948, 0.004601932811780948, 0.946617579383341, 0.9401748734468477, 0.007823285780027611, 0.0041417395306028535, 0.0041417395306028535, 0.0041417395306028535, 0.0041417395306028535, 0.0041417395306028535, 0.0041417395306028535, 0.0041417395306028535, 0.004601932811780948, 0.0041417395306028535, 0.004601932811780948, 0.007823285780027611, 0.015646571560055222, 0.017027151403589506, 0.02393005062126093, 0.02577082374597331, 0.02807179015186378, 0.030832949838932353, 0.03727565577542568, 0.039116428900138056, 0.04141739530602853, 0.04832029452369995, 0.05660377358490566, 0.06810860561435803, 0.1150483202945237, 0.2300966405890474], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/RCC1_2.gap.json b/pfam_gap_rates/RCC1_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..3cdcc1dc4a6d483f222952b24edfc9fc1da13aba
--- /dev/null
+++ b/pfam_gap_rates/RCC1_2.gap.json
@@ -0,0 +1 @@
+{"family": "RCC1_2", "n_seqs": 3412, "length": 30, "gap_rates": [0.4504689331770223, 0.2447245017584994, 0.1392145369284877, 0.05861664712778429, 0.03751465416178194, 0.022274325908558032, 0.01406799531066823, 0.008499413833528723, 0.004396248534583822, 0.0014654161781946073, 0.0, 0.0, 0.0005861664712778429, 0.0, 0.0005861664712778429, 0.00029308323563892143, 0.0005861664712778429, 0.0005861664712778429, 0.0035169988276670576, 0.0, 0.0, 0.0005861664712778429, 0.0011723329425556857, 0.00615474794841735, 0.03048065650644783, 0.07121922626025791, 0.10023446658851114, 0.1368698710433763, 0.17262602579132474, 0.3062719812426729], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/RF-1.gap.json b/pfam_gap_rates/RF-1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..0359955664f3f33c354e0c7865186bd65f3170d7
--- /dev/null
+++ b/pfam_gap_rates/RF-1.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/RIB43A.gap.json b/pfam_gap_rates/RIB43A.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..06d035a60f10951ebf1112363e7c35513a5b6be3
--- /dev/null
+++ b/pfam_gap_rates/RIB43A.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/RIBIOP_C.gap.json b/pfam_gap_rates/RIBIOP_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d6f290886f6935c77a50aaa7332309f8722f7235
--- /dev/null
+++ b/pfam_gap_rates/RIBIOP_C.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/RNA_pol_L_2.gap.json b/pfam_gap_rates/RNA_pol_L_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..35e2a0e6d425ee917a0e13fc3f09817bde09e684
--- /dev/null
+++ b/pfam_gap_rates/RNA_pol_L_2.gap.json
@@ -0,0 +1 @@
+{"family": "RNA_pol_L_2", "n_seqs": 719, "length": 76, "gap_rates": [0.8831710709318498, 0.24617524339360222, 0.06397774687065369, 0.04728789986091794, 0.043115438108484005, 0.04033379694019471, 0.04033379694019471, 0.04033379694019471, 0.03894297635605007, 0.03894297635605007, 0.03894297635605007, 0.03894297635605007, 0.037552155771905425, 0.03616133518776078, 0.03616133518776078, 0.03477051460361613, 0.03337969401947149, 0.03337969401947149, 0.02920723226703755, 0.019471488178025034, 0.016689847009735744, 0.013908205841446454, 0.009735744089012517, 0.015299026425591099, 0.016689847009735744, 0.01808066759388039, 0.019471488178025034, 0.02086230876216968, 0.01808066759388039, 0.019471488178025034, 0.01808066759388039, 0.016689847009735744, 0.015299026425591099, 0.011126564673157162, 0.009735744089012517, 0.009735744089012517, 0.009735744089012517, 0.011126564673157162, 0.012517385257301807, 0.012517385257301807, 0.013908205841446454, 0.015299026425591099, 0.015299026425591099, 0.016689847009735744, 0.016689847009735744, 0.01808066759388039, 0.02086230876216968, 0.02086230876216968, 0.03894297635605007, 0.9068150208623088, 0.9276773296244785, 0.2809457579972184, 0.06954102920723226, 0.05146036161335188, 0.03616133518776078, 0.03616133518776078, 0.03616133518776078, 0.037552155771905425, 0.037552155771905425, 0.037552155771905425, 0.037552155771905425, 0.037552155771905425, 0.037552155771905425, 0.03894297635605007, 0.03894297635605007, 0.04172461752433936, 0.04450625869262865, 0.04450625869262865, 0.0458970792767733, 0.05146036161335188, 0.05285118219749652, 0.06258692628650904, 0.06536856745479833, 0.07510431154381085, 0.15577190542420027, 0.35465924895688455], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/RNA_pol_Rpb1_3.gap.json b/pfam_gap_rates/RNA_pol_Rpb1_3.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..86bcb3738c3317ff36d7e3a913f2acd8e0ab2625
--- /dev/null
+++ b/pfam_gap_rates/RNA_pol_Rpb1_3.gap.json
@@ -0,0 +1 @@
+{"family": "RNA_pol_Rpb1_3", "n_seqs": 3614, "length": 234, "gap_rates": [0.11427780852241284, 0.06281128942999446, 0.058107360265633644, 0.05534034311012728, 0.05478693967902601, 0.05368013281682346, 0.04980630879911455, 0.04925290536801328, 0.04897620365246264, 0.04897620365246264, 0.04897620365246264, 0.04897620365246264, 0.048699501936912006, 0.048422800221361376, 0.048699501936912006, 0.04814609850581074, 0.04703929164360819, 0.04620918649695628, 0.04620918649695628, 0.04620918649695628, 0.045932484781405644, 0.045932484781405644, 0.04620918649695628, 0.045932484781405644, 0.045932484781405644, 0.045932484781405644, 0.045932484781405644, 0.04648588821250692, 0.05672385168788047, 0.38240177089097954, 0.39125622578859987, 0.3926397343663531, 0.40232429441062534, 0.8907028223574986, 0.90868843386829, 0.9463198671831765, 0.9496402877697842, 0.9192030990592142, 0.902600996126176, 0.8552850027670171, 0.396513558384062, 0.39180962921970114, 0.38267847260653015, 0.381294964028777, 0.048422800221361376, 0.04814609850581074, 0.04814609850581074, 0.048422800221361376, 0.04925290536801328, 0.048699501936912006, 0.048699501936912006, 0.04897620365246264, 0.04980630879911455, 0.05008301051466519, 0.05008301051466519, 0.050359712230215826, 0.050359712230215826, 0.050359712230215826, 0.050359712230215826, 0.6386275594908688, 0.6416712783619258, 0.6505257332595462, 0.6762589928057554, 0.7177642501383509, 0.8959601549529607, 0.9244604316546763, 0.9432761483121196, 0.9346983951300498, 0.9001106806862202, 0.8735473159933591, 0.706972883231876, 0.15301604869950194, 0.13973436635307138, 0.07138904261206419, 0.06862202545655784, 0.06502490315439956, 0.06391809629219701, 0.06364139457664637, 0.0653016048699502, 0.06696181516325402, 0.06806862202545656, 0.06945213060320973, 0.667404537908135, 0.0722191477587161, 0.06751521859435529, 0.503043718871057, 0.5251798561151079, 0.5475926950747094, 0.5843940232429441, 0.7335362479247372, 0.7791920309905921, 0.8967902600996126, 0.9125622578859989, 0.9371887105700055, 0.9474266740453791, 0.9441062534587714, 0.9211400110680686, 0.9059214167127836, 0.8718871057000553, 0.7440509131156613, 0.6726618705035972, 0.5558937465412286, 0.5354178195904815, 0.5096845600442723, 0.5013835085777532, 0.06364139457664637, 0.06336469286109574, 0.062257885998893196, 0.062257885998893196, 0.06253458771444383, 0.061427780852241286, 0.06170448256779192, 0.06170448256779192, 0.061427780852241286, 0.06170448256779192, 0.061427780852241286, 0.06170448256779192, 0.062257885998893196, 0.10957387935805202, 0.8386828998339789, 0.8467072495849475, 0.856945213060321, 0.9449363586054234, 0.9175428887659104, 0.8547315993359159, 0.8420033204205866, 0.831765356945213, 0.0722191477587161, 0.10099612617598229, 0.10653016048699501, 0.10763696734919756, 0.10985058107360265, 0.12064194798007748, 0.308245711123409, 0.5841173215273935, 0.8016048699501936, 0.6820697288323188, 0.5976757055893747, 0.6187050359712231, 0.5929717764250139, 0.53043718871057, 0.6092971776425014, 0.624792473713337, 0.6485888212506917, 0.676535694521306, 0.796070835639181, 0.8303818483674599, 0.887382401770891, 0.9247371333702269, 0.9366353071389043, 0.9490868843386829, 0.9435528500276702, 0.9302711676812396, 0.9128389596015495, 0.8550083010514665, 0.8107360265633647, 0.7706142778085224, 0.6574432761483121, 0.6353071389042612, 0.616491422246818, 0.6018262313226342, 0.5320973990038739, 0.44798007747648033, 0.30298837852794686, 0.11151079136690648, 0.08992805755395683, 0.08688433868289984, 0.08605423353624793, 0.08799114554510237, 0.08882125069175428, 0.08992805755395683, 0.09933591588267847, 0.5500830105146652, 0.5716657443276149, 0.5702822357498617, 0.5617044825677919, 0.5390149418926398, 0.533480907581627, 0.5251798561151079, 0.5, 0.47703375760929717, 0.44936358605423354, 0.3984504703929164, 0.9222468179302712, 0.9244604316546763, 0.9230769230769231, 0.9192030990592142, 0.31101272827891535, 0.07166574432761483, 0.07055893746541228, 0.05949086884338683, 0.05644714997232983, 0.0539568345323741, 0.053403431101272825, 0.053126729385722195, 0.053126729385722195, 0.053126729385722195, 0.05285002767017156, 0.05285002767017156, 0.05368013281682346, 0.054233536247924735, 0.054233536247924735, 0.06889872717210847, 0.058107360265633644, 0.055893746541228556, 0.05672385168788047, 0.055893746541228556, 0.05672385168788047, 0.05727725511898174, 0.05727725511898174, 0.05755395683453238, 0.058107360265633644, 0.05838406198118428, 0.05866076369673492, 0.05838406198118428, 0.05838406198118428, 0.05921416712783619, 0.05921416712783619, 0.05949086884338683, 0.059767570558937465, 0.06032097399003874, 0.06032097399003874, 0.06115107913669065, 0.062257885998893196, 0.06253458771444383, 0.06253458771444383, 0.06253458771444383, 0.06253458771444383, 0.06336469286109574, 0.06391809629219701, 0.06502490315439956, 0.06945213060320973, 0.08079690094078583, 0.18179302711676812], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/RNA_pol_Rpb2_7.gap.json b/pfam_gap_rates/RNA_pol_Rpb2_7.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..93d2091a555b22045b17a8c59ec5e84c40d11e40
--- /dev/null
+++ b/pfam_gap_rates/RNA_pol_Rpb2_7.gap.json
@@ -0,0 +1 @@
+{"family": "RNA_pol_Rpb2_7", "n_seqs": 3458, "length": 105, "gap_rates": [0.011278195488721804, 0.009543088490456911, 0.009253903990746095, 0.009253903990746095, 0.009253903990746095, 0.009253903990746095, 0.00838635049161365, 0.005205320994794679, 0.005205320994794679, 0.004916136495083863, 0.0037593984962406013, 0.003470213996529786, 0.003470213996529786, 0.003470213996529786, 0.003470213996529786, 0.003470213996529786, 0.003470213996529786, 0.0031810294968189707, 0.004337767495662233, 0.004916136495083863, 0.004916136495083863, 0.005205320994794679, 0.005205320994794679, 0.00578368999421631, 0.004916136495083863, 0.005494505494505495, 0.006940427993059572, 0.007518796992481203, 0.006651243493348756, 0.006072874493927126, 0.00578368999421631, 0.6648351648351648, 0.6654135338345865, 0.6662810873337189, 0.6671486408328514, 0.010410641989589358, 0.010121457489878543, 0.010121457489878543, 0.010410641989589358, 0.01156737998843262, 0.012145748987854251, 0.011856564488143435, 0.012145748987854251, 0.012434933487565067, 0.013013302486986697, 0.015905147484094852, 0.6761133603238867, 0.6761133603238867, 0.7669172932330827, 0.7689415847310584, 0.7741469057258531, 0.9042799305957201, 0.9060150375939849, 0.9100636205899364, 0.9259687680740313, 0.9317524580682476, 0.9438982070561018, 0.9465008675534992, 0.9398496240601504, 0.9291497975708503, 0.9144013880855986, 0.9063042220936958, 0.9051474840948525, 0.8791208791208791, 0.7715442452284558, 0.768074031231926, 0.7620011567379988, 0.6778484673221515, 0.6839213418160787, 0.6847888953152111, 0.03267784846732215, 0.031231925968768073, 0.03267784846732215, 0.03325621746674378, 0.035569693464430306, 0.03643724696356275, 0.06362058993637941, 0.04164256795835743, 0.042799305957200696, 0.04337767495662233, 0.04684788895315211, 0.6671486408328514, 0.04713707345286293, 0.04395604395604396, 0.044534412955465584, 0.045112781954887216, 0.045401966454598035, 0.045401966454598035, 0.045980335454019666, 0.04626951995373048, 0.04626951995373048, 0.04626951995373048, 0.04684788895315211, 0.04684788895315211, 0.04742625795257374, 0.04771544245228456, 0.04800462695199537, 0.048293811451706185, 0.04945054945054945, 0.0503181029496819, 0.05205320994794679, 0.06680161943319839, 0.0896471949103528, 0.20850202429149797, 0.8204164256795836], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/RNA_pol_Rpb6.gap.json b/pfam_gap_rates/RNA_pol_Rpb6.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d147b101f399e97d9d011302a408bc485fbee6e1
--- /dev/null
+++ b/pfam_gap_rates/RNA_pol_Rpb6.gap.json
@@ -0,0 +1 @@
+{"family": "RNA_pol_Rpb6", "n_seqs": 2171, "length": 84, "gap_rates": [0.4785812989405804, 0.2938737908797789, 0.18701059419622293, 0.14693689543988944, 0.12528788576692768, 0.07369875633348687, 0.04283740211883925, 0.013357899585444496, 0.009212344541685858, 0.006909258406264394, 0.006909258406264394, 0.004606172270842929, 0.004606172270842929, 0.004145555043758637, 0.004145555043758637, 0.0032243205895900505, 0.0027637033625057578, 0.0032243205895900505, 0.0018424689083371719, 0.0013818516812528789, 0.0013818516812528789, 0.0013818516812528789, 0.0018424689083371719, 0.9378166743436205, 0.2220175034546292, 0.24873330262551818, 0.2478120681713496, 0.2805158912943344, 0.2597881160755412, 0.5204974666052511, 0.8650391524643022, 0.9391985260248733, 0.6204514048825426, 0.41916167664670656, 0.11008751727314602, 0.3330262551819438, 0.41455550437586364, 0.5481345002303086, 0.5937356057116536, 0.627360663288807, 0.7977890373099954, 0.8429295255642562, 0.889912482726854, 0.924458774758176, 0.9014279134039613, 0.8765545831414094, 0.8268079226163059, 0.7710732381391064, 0.608475356978351, 0.5757715338553662, 0.4767388300322432, 0.3652694610778443, 0.04375863657300783, 0.39705204974666053, 0.12805158912943343, 0.020727775218793182, 0.9226163058498388, 0.935513588208199, 0.9456471672040534, 0.946568401658222, 0.9474896361123906, 0.9484108705665591, 0.9474896361123906, 0.9461077844311377, 0.9410409949332105, 0.9318286503915246, 0.919852602487333, 0.007369875633348687, 0.023030861354214647, 0.02349147858129894, 0.006909258406264394, 0.006909258406264394, 0.006909258406264394, 0.006909258406264394, 0.007369875633348687, 0.00783049286043298, 0.009672961768770152, 0.014739751266697375, 0.018424689083371717, 0.02487333026255182, 0.06909258406264394, 0.11008751727314602, 0.410409949332105, 0.6292031321971442], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/RNHCP.gap.json b/pfam_gap_rates/RNHCP.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..76e2cbcee657c14d1020a3984346902d312af580
--- /dev/null
+++ b/pfam_gap_rates/RNHCP.gap.json
@@ -0,0 +1 @@
+{"family": "RNHCP", "n_seqs": 209, "length": 91, "gap_rates": [0.7990430622009569, 0.16267942583732056, 0.0861244019138756, 0.07177033492822966, 0.07177033492822966, 0.07177033492822966, 0.07177033492822966, 0.06698564593301436, 0.06698564593301436, 0.06698564593301436, 0.06698564593301436, 0.07177033492822966, 0.06698564593301436, 0.06698564593301436, 0.2679425837320574, 0.2631578947368421, 0.27751196172248804, 0.2679425837320574, 0.05741626794258373, 0.05741626794258373, 0.3588516746411483, 0.2822966507177033, 0.05741626794258373, 0.05741626794258373, 0.05263157894736842, 0.05263157894736842, 0.05263157894736842, 0.05263157894736842, 0.05263157894736842, 0.05263157894736842, 0.05263157894736842, 0.05263157894736842, 0.05263157894736842, 0.05263157894736842, 0.05741626794258373, 0.0430622009569378, 0.0430622009569378, 0.8181818181818182, 0.05263157894736842, 0.05263157894736842, 0.04784688995215311, 0.0430622009569378, 0.0430622009569378, 0.0430622009569378, 0.03827751196172249, 0.03827751196172249, 0.03349282296650718, 0.03349282296650718, 0.03349282296650718, 0.03349282296650718, 0.004784688995215311, 0.009569377990430622, 0.009569377990430622, 0.004784688995215311, 0.004784688995215311, 0.004784688995215311, 0.009569377990430622, 0.15789473684210525, 0.014354066985645933, 0.1291866028708134, 0.004784688995215311, 0.004784688995215311, 0.004784688995215311, 0.004784688995215311, 0.004784688995215311, 0.004784688995215311, 0.009569377990430622, 0.009569377990430622, 0.009569377990430622, 0.009569377990430622, 0.009569377990430622, 0.009569377990430622, 0.009569377990430622, 0.009569377990430622, 0.009569377990430622, 0.009569377990430622, 0.009569377990430622, 0.009569377990430622, 0.009569377990430622, 0.009569377990430622, 0.009569377990430622, 0.014354066985645933, 0.019138755980861243, 0.023923444976076555, 0.03349282296650718, 0.06698564593301436, 0.09569377990430622, 0.15789473684210525, 0.19617224880382775, 0.23444976076555024, 0.507177033492823], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/RNase_H2_suC.gap.json b/pfam_gap_rates/RNase_H2_suC.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..12b8031dc1c7c6ca2b08e3920f14a902692202ca
--- /dev/null
+++ b/pfam_gap_rates/RNase_H2_suC.gap.json
@@ -0,0 +1 @@
+{"family": "RNase_H2_suC", "n_seqs": 273, "length": 277, "gap_rates": [0.7875457875457875, 0.1978021978021978, 0.10989010989010989, 0.10622710622710622, 0.0989010989010989, 0.0989010989010989, 0.0989010989010989, 0.0989010989010989, 0.0989010989010989, 0.0989010989010989, 0.09523809523809523, 0.09523809523809523, 0.09523809523809523, 0.09157509157509157, 0.09157509157509157, 0.09157509157509157, 0.7692307692307693, 0.09523809523809523, 0.09523809523809523, 0.0989010989010989, 0.0989010989010989, 0.09523809523809523, 0.09523809523809523, 0.09157509157509157, 0.5787545787545788, 0.5934065934065934, 0.7619047619047619, 0.7435897435897436, 0.7252747252747253, 0.8205128205128205, 0.8278388278388278, 0.8388278388278388, 0.8498168498168498, 0.8717948717948718, 0.8864468864468864, 0.8974358974358975, 0.9120879120879121, 0.9157509157509157, 0.9157509157509157, 0.9230769230769231, 0.9230769230769231, 0.9340659340659341, 0.9377289377289377, 0.9413919413919414, 0.9340659340659341, 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\ No newline at end of file
diff --git a/pfam_gap_rates/RRM_DME.gap.json b/pfam_gap_rates/RRM_DME.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..3459af90d4448d268b7dd082ab0439a5ef66b6f5
--- /dev/null
+++ b/pfam_gap_rates/RRM_DME.gap.json
@@ -0,0 +1 @@
+{"family": "RRM_DME", "n_seqs": 108, "length": 101, "gap_rates": [0.26851851851851855, 0.17592592592592593, 0.14814814814814814, 0.12962962962962962, 0.10185185185185185, 0.09259259259259259, 0.09259259259259259, 0.09259259259259259, 0.09259259259259259, 0.09259259259259259, 0.07407407407407407, 0.07407407407407407, 0.07407407407407407, 0.07407407407407407, 0.07407407407407407, 0.07407407407407407, 0.07407407407407407, 0.07407407407407407, 0.07407407407407407, 0.07407407407407407, 0.07407407407407407, 0.06481481481481481, 0.06481481481481481, 0.06481481481481481, 0.06481481481481481, 0.06481481481481481, 0.037037037037037035, 0.046296296296296294, 0.06481481481481481, 0.05555555555555555, 0.05555555555555555, 0.05555555555555555, 0.05555555555555555, 0.05555555555555555, 0.07407407407407407, 0.07407407407407407, 0.05555555555555555, 0.05555555555555555, 0.05555555555555555, 0.05555555555555555, 0.05555555555555555, 0.07407407407407407, 0.07407407407407407, 0.07407407407407407, 0.07407407407407407, 0.07407407407407407, 0.07407407407407407, 0.09259259259259259, 0.09259259259259259, 0.07407407407407407, 0.07407407407407407, 0.07407407407407407, 0.06481481481481481, 0.06481481481481481, 0.06481481481481481, 0.06481481481481481, 0.06481481481481481, 0.06481481481481481, 0.06481481481481481, 0.06481481481481481, 0.05555555555555555, 0.05555555555555555, 0.046296296296296294, 0.05555555555555555, 0.08333333333333333, 0.1111111111111111, 0.12037037037037036, 0.12962962962962962, 0.12962962962962962, 0.12962962962962962, 0.1388888888888889, 0.1388888888888889, 0.1388888888888889, 0.16666666666666666, 0.17592592592592593, 0.17592592592592593, 0.16666666666666666, 0.1388888888888889, 0.17592592592592593, 0.17592592592592593, 0.17592592592592593, 0.18518518518518517, 0.19444444444444445, 0.19444444444444445, 0.19444444444444445, 0.19444444444444445, 0.19444444444444445, 0.19444444444444445, 0.21296296296296297, 0.2222222222222222, 0.2222222222222222, 0.2222222222222222, 0.2222222222222222, 0.2222222222222222, 0.2222222222222222, 0.24074074074074073, 0.25925925925925924, 0.26851851851851855, 0.26851851851851855, 0.26851851851851855, 0.26851851851851855], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/RS4NT.gap.json b/pfam_gap_rates/RS4NT.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..018cd54292daea054778b172a91da6e8d8221f22
--- /dev/null
+++ b/pfam_gap_rates/RS4NT.gap.json
@@ -0,0 +1 @@
+{"family": "RS4NT", "n_seqs": 497, "length": 37, "gap_rates": [0.23943661971830985, 0.20321931589537223, 0.19517102615694165, 0.14084507042253522, 0.1267605633802817, 0.09859154929577464, 0.07847082494969819, 0.07645875251509054, 0.0744466800804829, 0.0744466800804829, 0.0744466800804829, 0.0744466800804829, 0.0744466800804829, 0.0744466800804829, 0.0744466800804829, 0.0744466800804829, 0.006036217303822937, 0.008048289738430584, 0.008048289738430584, 0.006036217303822937, 0.002012072434607646, 0.002012072434607646, 0.0, 0.002012072434607646, 0.002012072434607646, 0.004024144869215292, 0.01006036217303823, 0.01006036217303823, 0.01006036217303823, 0.01006036217303823, 0.012072434607645875, 0.014084507042253521, 0.01609657947686117, 0.02012072434607646, 0.028169014084507043, 0.06841046277665996, 0.193158953722334], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/RSB_motif.gap.json b/pfam_gap_rates/RSB_motif.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d2042d9ad5f3d5cdff10faa22f2eea855b58f5d3
--- /dev/null
+++ b/pfam_gap_rates/RSB_motif.gap.json
@@ -0,0 +1 @@
+{"family": "RSB_motif", "n_seqs": 156, "length": 122, "gap_rates": [0.8653846153846154, 0.8269230769230769, 0.8076923076923077, 0.8012820512820513, 0.7756410256410257, 0.7371794871794872, 0.6666666666666666, 0.6474358974358975, 0.6602564102564102, 0.6602564102564102, 0.6730769230769231, 0.7243589743589743, 0.7115384615384616, 0.9487179487179487, 0.7051282051282052, 0.6666666666666666, 0.6602564102564102, 0.5961538461538461, 0.6089743589743589, 0.6025641025641025, 0.6153846153846154, 0.5897435897435898, 0.5897435897435898, 0.5833333333333334, 0.5833333333333334, 0.5641025641025641, 0.9487179487179487, 0.8910256410256411, 0.5897435897435898, 0.5961538461538461, 0.5769230769230769, 0.6089743589743589, 0.5833333333333334, 0.5641025641025641, 0.5384615384615384, 0.5448717948717948, 0.5384615384615384, 0.5, 0.4935897435897436, 0.4807692307692308, 0.4807692307692308, 0.48717948717948717, 0.48717948717948717, 0.48717948717948717, 0.8717948717948718, 0.9102564102564102, 0.9230769230769231, 0.8910256410256411, 0.8525641025641025, 0.6025641025641025, 0.6025641025641025, 0.5512820512820513, 0.5192307692307693, 0.5064102564102564, 0.46794871794871795, 0.44871794871794873, 0.44871794871794873, 0.46794871794871795, 0.4230769230769231, 0.38461538461538464, 0.36538461538461536, 0.34615384615384615, 0.3076923076923077, 0.2948717948717949, 0.2948717948717949, 0.30128205128205127, 0.33974358974358976, 0.7884615384615384, 0.17307692307692307, 0.15384615384615385, 0.08974358974358974, 0.0641025641025641, 0.057692307692307696, 0.9102564102564102, 0.05128205128205128, 0.8269230769230769, 0.8525641025641025, 0.8910256410256411, 0.9358974358974359, 0.9358974358974359, 0.8717948717948718, 0.8333333333333334, 0.8269230769230769, 0.04487179487179487, 0.019230769230769232, 0.00641025641025641, 0.00641025641025641, 0.00641025641025641, 0.00641025641025641, 0.00641025641025641, 0.00641025641025641, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.01282051282051282, 0.057692307692307696, 0.09615384615384616, 0.10256410256410256, 0.10256410256410256, 0.11538461538461539, 0.16666666666666666, 0.22435897435897437, 0.3269230769230769, 0.4358974358974359, 0.532051282051282, 0.6410256410256411, 0.75, 0.7948717948717948], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/RVP.gap.json b/pfam_gap_rates/RVP.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..20ce354b22edb9dd61036c3cf0cdda843ea22624
--- /dev/null
+++ b/pfam_gap_rates/RVP.gap.json
@@ -0,0 +1 @@
+{"family": "RVP", "n_seqs": 250, "length": 116, "gap_rates": [0.788, 0.7, 0.668, 0.592, 0.528, 0.44, 0.328, 0.292, 0.272, 0.252, 0.236, 0.224, 0.172, 0.836, 0.856, 0.94, 0.9, 0.84, 0.8, 0.088, 0.068, 0.06, 0.048, 0.028, 0.02, 0.016, 0.016, 0.016, 0.016, 0.016, 0.016, 0.016, 0.016, 0.016, 0.02, 0.02, 0.044, 0.044, 0.04, 0.048, 0.032, 0.044, 0.292, 0.176, 0.116, 0.876, 0.944, 0.924, 0.716, 0.112, 0.08, 0.076, 0.08, 0.084, 0.08, 0.064, 0.064, 0.068, 0.072, 0.08, 0.08, 0.104, 0.1, 0.668, 0.112, 0.096, 0.116, 0.12, 0.12, 0.124, 0.12, 0.248, 0.144, 0.128, 0.128, 0.128, 0.132, 0.14, 0.144, 0.14, 0.14, 0.136, 0.16, 0.4, 0.324, 0.136, 0.144, 0.144, 0.136, 0.136, 0.136, 0.228, 0.804, 0.14, 0.144, 0.156, 0.14, 0.8, 0.936, 0.864, 0.452, 0.14, 0.14, 0.148, 0.156, 0.164, 0.196, 0.212, 0.232, 0.284, 0.328, 0.392, 0.484, 0.568, 0.632, 0.912], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Rad60-SLD.gap.json b/pfam_gap_rates/Rad60-SLD.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..dddb187a288da57f4437e4c33e82b61aae1e0ebc
--- /dev/null
+++ b/pfam_gap_rates/Rad60-SLD.gap.json
@@ -0,0 +1 @@
+{"family": "Rad60-SLD", "n_seqs": 914, "length": 75, "gap_rates": [0.5076586433260394, 0.350109409190372, 0.2735229759299781, 0.26258205689277897, 0.18818380743982493, 0.175054704595186, 0.15317286652078774, 0.12910284463894967, 0.09846827133479212, 0.08533916849015317, 0.08096280087527352, 0.8161925601750547, 0.05579868708971553, 0.05579868708971553, 0.045951859956236324, 0.04266958424507659, 0.038293216630196934, 0.037199124726477024, 0.02954048140043764, 0.02516411378555799, 0.024070021881838075, 0.022975929978118162, 0.02188183807439825, 0.020787746170678335, 0.020787746170678335, 0.018599562363238512, 0.0175054704595186, 0.010940919037199124, 0.010940919037199124, 0.010940919037199124, 0.014223194748358862, 0.01312910284463895, 0.009846827133479213, 0.0087527352297593, 0.010940919037199124, 0.015317286652078774, 0.015317286652078774, 0.015317286652078774, 0.0175054704595186, 0.8019693654266958, 0.9485776805251641, 0.9310722100656456, 0.03391684901531729, 0.02188183807439825, 0.016411378555798686, 0.014223194748358862, 0.015317286652078774, 0.015317286652078774, 0.015317286652078774, 0.016411378555798686, 0.016411378555798686, 0.0175054704595186, 0.016411378555798686, 0.016411378555798686, 0.016411378555798686, 0.016411378555798686, 0.0175054704595186, 0.0175054704595186, 0.0175054704595186, 0.018599562363238512, 0.018599562363238512, 0.02516411378555799, 0.02954048140043764, 0.03282275711159737, 0.03391684901531729, 0.0350109409190372, 0.0350109409190372, 0.037199124726477024, 0.04048140043763676, 0.04814004376367615, 0.05689277899343545, 0.08643326039387308, 0.13129102844638948, 0.4135667396061269, 0.687089715536105], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/RadC.gap.json b/pfam_gap_rates/RadC.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ca9247c5245acff9c81a8a2c7bc8bb6331bf6236
--- /dev/null
+++ b/pfam_gap_rates/RadC.gap.json
@@ -0,0 +1 @@
+{"family": "RadC", "n_seqs": 1992, "length": 122, "gap_rates": [0.6827309236947792, 0.23845381526104417, 0.1280120481927711, 0.0963855421686747, 0.0747991967871486, 0.06375502008032129, 0.05471887550200803, 0.05120481927710843, 0.045180722891566265, 0.04417670682730924, 0.056726907630522086, 0.09387550200803213, 0.0426706827309237, 0.04066265060240964, 0.03815261044176707, 0.04718875502008032, 0.03614457831325301, 0.03714859437751004, 0.03162650602409638, 0.030120481927710843, 0.030120481927710843, 0.02961847389558233, 0.02961847389558233, 0.02961847389558233, 0.0286144578313253, 0.02710843373493976, 0.025602409638554216, 0.025100401606425703, 0.025602409638554216, 0.025100401606425703, 0.02459839357429719, 0.02459839357429719, 0.024096385542168676, 0.024096385542168676, 0.024096385542168676, 0.024096385542168676, 0.02359437751004016, 0.02710843373493976, 0.02459839357429719, 0.024096385542168676, 0.024096385542168676, 0.022590361445783132, 0.023092369477911646, 0.024096385542168676, 0.02459839357429719, 0.024096385542168676, 0.025602409638554216, 0.024096385542168676, 0.025100401606425703, 0.02359437751004016, 0.022590361445783132, 0.02108433734939759, 0.02208835341365462, 0.023092369477911646, 0.022590361445783132, 0.021586345381526106, 0.02108433734939759, 0.02108433734939759, 0.02208835341365462, 0.024096385542168676, 0.023092369477911646, 0.023092369477911646, 0.021586345381526106, 0.02108433734939759, 0.019076305220883535, 0.019076305220883535, 0.019076305220883535, 0.016566265060240965, 0.01355421686746988, 0.010542168674698794, 0.01104417670682731, 0.01355421686746988, 0.015562248995983935, 0.01606425702811245, 0.01355421686746988, 0.01606425702811245, 0.01606425702811245, 0.017570281124497992, 0.01857429718875502, 0.01857429718875502, 0.01857429718875502, 0.01957831325301205, 0.020080321285140562, 0.020582329317269075, 0.020582329317269075, 0.01957831325301205, 0.01957831325301205, 0.01957831325301205, 0.020582329317269075, 0.022590361445783132, 0.024096385542168676, 0.025100401606425703, 0.026606425702811246, 0.028112449799196786, 0.02961847389558233, 0.03112449799196787, 0.0321285140562249, 0.03313253012048193, 0.033634538152610444, 0.033634538152610444, 0.033634538152610444, 0.03313253012048193, 0.03413654618473896, 0.03463855421686747, 0.03463855421686747, 0.035140562248995984, 0.0356425702811245, 0.0356425702811245, 0.03614457831325301, 0.22991967871485944, 0.10040160642570281, 0.12198795180722892, 0.6430722891566265, 0.05321285140562249, 0.05220883534136546, 0.05471887550200803, 0.058734939759036146, 0.06927710843373494, 0.08785140562248996, 0.18624497991967873, 0.33232931726907633, 0.8539156626506024], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Rap1_C.gap.json b/pfam_gap_rates/Rap1_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..2266c3034d72efbb37a5f848e77ceaf150d6fb6a
--- /dev/null
+++ b/pfam_gap_rates/Rap1_C.gap.json
@@ -0,0 +1 @@
+{"family": "Rap1_C", "n_seqs": 107, "length": 113, "gap_rates": [0.4672897196261682, 0.37383177570093457, 0.2803738317757009, 0.22429906542056074, 0.19626168224299065, 0.18691588785046728, 0.17757009345794392, 0.1308411214953271, 0.102803738317757, 0.102803738317757, 0.08411214953271028, 0.06542056074766354, 0.06542056074766354, 0.06542056074766354, 0.056074766355140186, 0.056074766355140186, 0.056074766355140186, 0.056074766355140186, 0.056074766355140186, 0.056074766355140186, 0.04672897196261682, 0.04672897196261682, 0.04672897196261682, 0.6355140186915887, 0.037383177570093455, 0.04672897196261682, 0.04672897196261682, 0.056074766355140186, 0.04672897196261682, 0.04672897196261682, 0.04672897196261682, 0.04672897196261682, 0.04672897196261682, 0.056074766355140186, 0.07476635514018691, 0.9158878504672897, 0.897196261682243, 0.06542056074766354, 0.04672897196261682, 0.9345794392523364, 0.9345794392523364, 0.9345794392523364, 0.9345794392523364, 0.9345794392523364, 0.9252336448598131, 0.056074766355140186, 0.028037383177570093, 0.028037383177570093, 0.3364485981308411, 0.22429906542056074, 0.21495327102803738, 0.205607476635514, 0.19626168224299065, 0.028037383177570093, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.6915887850467289, 0.7009345794392523, 0.7009345794392523, 0.7383177570093458, 0.7383177570093458, 0.7476635514018691, 0.7570093457943925, 0.7850467289719626, 0.8691588785046729, 0.9065420560747663, 0.9439252336448598, 0.9345794392523364, 0.9065420560747663, 0.794392523364486, 0.7757009345794392, 0.7570093457943925, 0.7383177570093458, 0.7383177570093458, 0.719626168224299, 0.7009345794392523, 0.6915887850467289, 0.6448598130841121, 0.056074766355140186, 0.04672897196261682, 0.009345794392523364, 0.0, 0.0, 0.0, 0.0, 0.018691588785046728, 0.018691588785046728, 0.018691588785046728, 0.009345794392523364, 0.0, 0.009345794392523364, 0.0, 0.0, 0.018691588785046728, 0.009345794392523364, 0.028037383177570093, 0.018691588785046728, 0.018691588785046728, 0.018691588785046728, 0.018691588785046728, 0.018691588785046728, 0.018691588785046728, 0.04672897196261682, 0.06542056074766354, 0.12149532710280374, 0.5981308411214953], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Raptor_N.gap.json b/pfam_gap_rates/Raptor_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..3a687f475ac9224e66b82c61a333d2d906c51f43
--- /dev/null
+++ b/pfam_gap_rates/Raptor_N.gap.json
@@ -0,0 +1 @@
+{"family": "Raptor_N", "n_seqs": 344, "length": 165, "gap_rates": [0.375, 0.1686046511627907, 0.1569767441860465, 0.14534883720930233, 0.13953488372093023, 0.13372093023255813, 0.13372093023255813, 0.13372093023255813, 0.13372093023255813, 0.12790697674418605, 0.12790697674418605, 0.12790697674418605, 0.125, 0.125, 0.11918604651162791, 0.11627906976744186, 0.11337209302325581, 0.11337209302325581, 0.11337209302325581, 0.11046511627906977, 0.11046511627906977, 0.936046511627907, 0.11046511627906977, 0.10755813953488372, 0.10755813953488372, 0.11046511627906977, 0.10465116279069768, 0.13953488372093023, 0.125, 0.09593023255813954, 0.0755813953488372, 0.0755813953488372, 0.0755813953488372, 0.0755813953488372, 0.0755813953488372, 0.08430232558139535, 0.08139534883720931, 0.0755813953488372, 0.07267441860465117, 0.2936046511627907, 0.3168604651162791, 0.3488372093023256, 0.8866279069767442, 0.9331395348837209, 0.813953488372093, 0.3226744186046512, 0.311046511627907, 0.29069767441860467, 0.0755813953488372, 0.7761627906976745, 0.8052325581395349, 0.8284883720930233, 0.8197674418604651, 0.8052325581395349, 0.747093023255814, 0.05813953488372093, 0.05813953488372093, 0.05813953488372093, 0.05813953488372093, 0.05813953488372093, 0.05813953488372093, 0.05813953488372093, 0.05813953488372093, 0.055232558139534885, 0.05232558139534884, 0.05232558139534884, 0.05232558139534884, 0.05232558139534884, 0.9244186046511628, 0.07848837209302326, 0.061046511627906974, 0.05813953488372093, 0.055232558139534885, 0.046511627906976744, 0.9273255813953488, 0.8953488372093024, 0.0436046511627907, 0.040697674418604654, 0.046511627906976744, 0.0436046511627907, 0.040697674418604654, 0.0436046511627907, 0.0436046511627907, 0.0436046511627907, 0.0436046511627907, 0.0436046511627907, 0.0436046511627907, 0.0436046511627907, 0.0436046511627907, 0.046511627906976744, 0.046511627906976744, 0.07267441860465117, 0.046511627906976744, 0.046511627906976744, 0.0436046511627907, 0.0436046511627907, 0.046511627906976744, 0.046511627906976744, 0.046511627906976744, 0.05813953488372093, 0.05232558139534884, 0.04941860465116279, 0.04941860465116279, 0.04941860465116279, 0.046511627906976744, 0.046511627906976744, 0.046511627906976744, 0.046511627906976744, 0.04941860465116279, 0.04941860465116279, 0.04941860465116279, 0.04941860465116279, 0.04941860465116279, 0.04941860465116279, 0.04941860465116279, 0.09011627906976744, 0.04941860465116279, 0.05813953488372093, 0.04941860465116279, 0.04941860465116279, 0.05232558139534884, 0.05813953488372093, 0.05232558139534884, 0.04941860465116279, 0.04941860465116279, 0.046511627906976744, 0.046511627906976744, 0.046511627906976744, 0.055232558139534885, 0.06395348837209303, 0.06686046511627906, 0.061046511627906974, 0.0755813953488372, 0.07267441860465117, 0.06686046511627906, 0.06395348837209303, 0.06395348837209303, 0.06395348837209303, 0.06686046511627906, 0.06686046511627906, 0.06686046511627906, 0.06686046511627906, 0.06686046511627906, 0.06686046511627906, 0.06686046511627906, 0.06976744186046512, 0.06686046511627906, 0.06686046511627906, 0.06976744186046512, 0.06976744186046512, 0.06976744186046512, 0.06976744186046512, 0.06976744186046512, 0.06976744186046512, 0.06976744186046512, 0.06976744186046512, 0.06976744186046512, 0.06976744186046512, 0.06976744186046512, 0.07267441860465117, 0.07267441860465117, 0.08430232558139535, 0.0872093023255814, 0.12209302325581395, 0.19767441860465115], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Ras_bdg_2.gap.json b/pfam_gap_rates/Ras_bdg_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b1023df69b0a8d729093886a3ce5369cedfd3a34
--- /dev/null
+++ b/pfam_gap_rates/Ras_bdg_2.gap.json
@@ -0,0 +1 @@
+{"family": "Ras_bdg_2", "n_seqs": 127, "length": 133, "gap_rates": [0.49606299212598426, 0.07086614173228346, 0.047244094488188976, 0.047244094488188976, 0.03937007874015748, 0.03937007874015748, 0.03937007874015748, 0.03937007874015748, 0.03937007874015748, 0.8582677165354331, 0.031496062992125984, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.007874015748031496, 0.007874015748031496, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.7795275590551181, 0.7795275590551181, 0.8031496062992126, 0.8188976377952756, 0.8267716535433071, 0.889763779527559, 0.9448818897637795, 0.9133858267716536, 0.8661417322834646, 0.8188976377952756, 0.8031496062992126, 0.7874015748031497, 0.7795275590551181, 0.7716535433070866, 0.0, 0.07086614173228346, 0.07086614173228346, 0.07874015748031496, 0.07874015748031496, 0.07874015748031496, 0.2440944881889764, 0.10236220472440945, 0.007874015748031496, 0.8818897637795275, 0.8818897637795275, 0.889763779527559, 0.905511811023622, 0.905511811023622, 0.9133858267716536, 0.9212598425196851, 0.9212598425196851, 0.9133858267716536, 0.905511811023622, 0.889763779527559, 0.8818897637795275, 0.8818897637795275, 0.8818897637795275, 0.007874015748031496, 0.007874015748031496, 0.007874015748031496, 0.007874015748031496, 0.007874015748031496, 0.007874015748031496, 0.015748031496062992, 0.015748031496062992, 0.4645669291338583, 0.4330708661417323, 0.3228346456692913, 0.15748031496062992, 0.03937007874015748, 0.023622047244094488, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.007874015748031496, 0.0, 0.8740157480314961, 0.8267716535433071, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.007874015748031496, 0.007874015748031496, 0.007874015748031496, 0.023622047244094488, 0.44881889763779526, 0.047244094488188976, 0.07874015748031496, 0.10236220472440945, 0.13385826771653545, 0.14960629921259844, 0.18110236220472442, 0.2047244094488189, 0.2204724409448819, 0.2440944881889764, 0.25196850393700787, 0.25196850393700787, 0.2677165354330709, 0.28346456692913385, 0.31496062992125984, 0.33070866141732286, 0.36220472440944884], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/RebB.gap.json b/pfam_gap_rates/RebB.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..091a137bafdd5efc8b582c38662285f12bcbae52
--- /dev/null
+++ b/pfam_gap_rates/RebB.gap.json
@@ -0,0 +1 @@
+{"family": "RebB", "n_seqs": 154, "length": 68, "gap_rates": [0.14935064935064934, 0.12987012987012986, 0.12337662337662338, 0.11038961038961038, 0.11038961038961038, 0.11038961038961038, 0.11038961038961038, 0.09740259740259741, 0.09090909090909091, 0.08441558441558442, 0.08441558441558442, 0.07792207792207792, 0.06493506493506493, 0.06493506493506493, 0.06493506493506493, 0.03896103896103896, 0.03896103896103896, 0.032467532467532464, 0.032467532467532464, 0.025974025974025976, 0.01948051948051948, 0.01948051948051948, 0.01948051948051948, 0.012987012987012988, 0.006493506493506494, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.006493506493506494, 0.006493506493506494, 0.006493506493506494, 0.006493506493506494, 0.006493506493506494, 0.012987012987012988, 0.012987012987012988, 0.006493506493506494, 0.012987012987012988, 0.012987012987012988, 0.012987012987012988, 0.012987012987012988, 0.012987012987012988, 0.012987012987012988, 0.012987012987012988, 0.012987012987012988, 0.012987012987012988, 0.012987012987012988, 0.025974025974025976, 0.025974025974025976, 0.025974025974025976, 0.032467532467532464, 0.03896103896103896, 0.03896103896103896, 0.045454545454545456, 0.05194805194805195, 0.05844155844155844, 0.07142857142857142, 0.08441558441558442, 0.16883116883116883, 0.2597402597402597, 0.3051948051948052, 0.38961038961038963, 0.7142857142857143], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/RecO_C.gap.json b/pfam_gap_rates/RecO_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..88225181545e704c2bb6a759244cacc508743fa7
--- /dev/null
+++ b/pfam_gap_rates/RecO_C.gap.json
@@ -0,0 +1 @@
+{"family": "RecO_C", "n_seqs": 1889, "length": 170, "gap_rates": [0.8253043938591847, 0.5023822128110111, 0.289571201694018, 0.19904711487559557, 0.15722604552673372, 0.11487559555320276, 0.09581789306511382, 0.07411328745367919, 0.06352567496029646, 0.05399682371625199, 0.04923239809422975, 0.046585494970884066, 0.04076230809952356, 0.03811540497617787, 0.035468501852832186, 0.03123345685547909, 0.029645314981471677, 0.048703017469560614, 0.02541026998411858, 0.0513499205929063, 0.02593965060878772, 0.9163578613022764, 0.03970354685018528, 0.026469031233456855, 0.022763366860772894, 0.02170460561143462, 0.019587083112758072, 0.02011646373742721, 0.03070407623080995, 0.019057702488088937, 0.015352038115404976, 0.014822657490735839, 0.013763896241397565, 0.013234515616728428, 0.01270513499205929, 0.013234515616728428, 0.013234515616728428, 0.013234515616728428, 0.013234515616728428, 0.01270513499205929, 0.013234515616728428, 0.013234515616728428, 0.9444150344097406, 0.01270513499205929, 0.04393859184753838, 0.03123345685547909, 0.05664372683959767, 0.8830068819481207, 0.9417681312863949, 0.5876124933827422, 0.10640550555849657, 0.06458443620963472, 0.015881418740074114, 0.012175754367390153, 0.01111699311805188, 0.009528851244044468, 0.010058231868713605, 0.008470089994706194, 0.6908417151932239, 0.008470089994706194, 0.008470089994706194, 0.008470089994706194, 0.007940709370037057, 0.007940709370037057, 0.007411328745367919, 0.007940709370037057, 0.007940709370037057, 0.007940709370037057, 0.008470089994706194, 0.014293276866066702, 0.03176283748014823, 0.04182106934886183, 0.057702488088935945, 0.08152461619904712, 0.09105346744309158, 0.10005293806246691, 0.10746426680783483, 0.10852302805717311, 0.10799364743250398, 0.11593435680254102, 0.11064055055584966, 0.12175754367390154, 0.11964002117522499, 0.1339332980412917, 0.12016940179989412, 0.12016940179989412, 0.1169931180518793, 0.1127580730545262, 0.11593435680254102, 0.13181577554261514, 0.12916887241926944, 0.14346214928533615, 0.31604023292747485, 0.3324510322922181, 0.5468501852832186, 0.8480677607199576, 0.9200635256749603, 0.9444150344097406, 0.9370037056643726, 0.8941238750661725, 0.8004235044997353, 0.4939121228163049, 0.3499205929062996, 0.32027527792482796, 0.18051879301217574, 0.17628374801482266, 0.1725780836421387, 0.15722604552673372, 0.1498147167813658, 0.14610905240868186, 0.14716781365802012, 0.1455796717840127, 0.14769719428268926, 0.14028586553732134, 0.142932768660667, 0.1424033880359979, 0.1413446267866596, 0.14187400741132875, 0.14346214928533615, 0.1424033880359979, 0.14346214928533615, 0.14505029115934356, 0.1455796717840127, 0.14505029115934356, 0.14505029115934356, 0.14505029115934356, 0.14716781365802012, 0.14716781365802012, 0.14610905240868186, 0.14716781365802012, 0.14928533615669667, 0.33668607728957123, 0.3276866066701959, 0.32292218104817366, 0.3197458973001588, 0.22710428798305982, 0.19851773425092642, 0.46003176283748015, 0.4473266278454209, 0.2980412916887242, 0.29168872419269454, 0.18845950238221282, 0.17204870301746955, 0.16993118051879302, 0.16516675489677077, 0.16516675489677077, 0.16463737427210165, 0.16622551614610906, 0.1656961355214399, 0.16834303864478561, 0.16834303864478561, 0.16887241926945473, 0.17204870301746955, 0.17204870301746955, 0.1725780836421387, 0.17363684489147696, 0.17628374801482266, 0.17998941238750663, 0.18740074113287453, 0.20010587612493383, 0.2196929592376919, 0.235574377977766, 0.26151402858655376, 0.8200105876124933, 0.3054526204340921, 0.3626257278983589, 0.39756484912652196, 0.43409211222869243, 0.5283218634197988, 0.8406564319745897], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/RecT.gap.json b/pfam_gap_rates/RecT.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a9fc9f28ca244e89df9496d49ea289cdf5b0f22d
--- /dev/null
+++ b/pfam_gap_rates/RecT.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Reductase_C.gap.json b/pfam_gap_rates/Reductase_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..cd935b4510074b80beb5c452d7c780814ff9717d
--- /dev/null
+++ b/pfam_gap_rates/Reductase_C.gap.json
@@ -0,0 +1 @@
+{"family": "Reductase_C", "n_seqs": 807, "length": 90, "gap_rates": [0.16728624535315986, 0.042131350681536554, 0.0161090458488228, 0.01486988847583643, 0.013630731102850062, 0.03469640644361834, 0.01734820322180917, 0.012391573729863693, 0.03345724907063197, 0.006195786864931847, 0.0037174721189591076, 0.0037174721189591076, 0.0037174721189591076, 0.0037174721189591076, 0.0037174721189591076, 0.0037174721189591076, 0.8884758364312267, 0.8451053283767038, 0.0024783147459727386, 0.0024783147459727386, 0.0024783147459727386, 0.009913258983890954, 0.007434944237918215, 0.01486988847583643, 0.008674101610904586, 0.007434944237918215, 0.007434944237918215, 0.004956629491945477, 0.004956629491945477, 0.0037174721189591076, 0.9169764560099133, 0.006195786864931847, 0.007434944237918215, 0.9306071871127634, 0.12763320941759604, 0.05080545229244114, 0.008674101610904586, 0.0024783147459727386, 0.0024783147459727386, 0.0012391573729863693, 0.0024783147459727386, 0.0012391573729863693, 0.0012391573729863693, 0.8835192069392813, 0.0012391573729863693, 0.0012391573729863693, 0.0, 0.0, 0.0012391573729863693, 0.0012391573729863693, 0.0012391573729863693, 0.0012391573729863693, 0.0012391573729863693, 0.0012391573729863693, 0.0024783147459727386, 0.0024783147459727386, 0.0024783147459727386, 0.006195786864931847, 0.013630731102850062, 0.01734820322180917, 0.01858736059479554, 0.01982651796778191, 0.023543990086741014, 0.026022304832713755, 0.027261462205700124, 0.028500619578686492, 0.03717472118959108, 0.042131350681536554, 0.06071871127633209, 0.0768277571251549, 0.08674101610904585, 0.09789343246592318, 0.12391573729863693, 0.13135068153655513, 0.161090458488228, 0.18711276332094176, 0.20693928128872366, 0.24783147459727387, 0.27137546468401486, 0.31970260223048325, 0.3754646840148699, 0.3903345724907063, 0.40272614622057, 0.41263940520446096, 0.41759603469640644, 0.4250309789343247, 0.4473358116480793, 0.4708798017348203, 0.5340768277571252, 0.7868649318463445], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/RelE.gap.json b/pfam_gap_rates/RelE.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..484e5a133947629f8035902048c401d40b259c5d
--- /dev/null
+++ b/pfam_gap_rates/RelE.gap.json
@@ -0,0 +1 @@
+{"family": "RelE", "n_seqs": 228, "length": 124, "gap_rates": [0.7763157894736842, 0.6710526315789473, 0.6403508771929824, 0.6403508771929824, 0.6271929824561403, 0.5877192982456141, 0.543859649122807, 0.5219298245614035, 0.5, 0.4956140350877193, 0.49122807017543857, 0.4780701754385965, 0.4692982456140351, 0.4517543859649123, 0.4517543859649123, 0.44298245614035087, 0.47368421052631576, 0.4473684210526316, 0.4473684210526316, 0.44298245614035087, 0.42543859649122806, 0.4166666666666667, 0.41228070175438597, 0.40789473684210525, 0.40350877192982454, 0.39473684210526316, 0.39473684210526316, 0.37719298245614036, 0.37280701754385964, 0.37280701754385964, 0.3684210526315789, 0.35964912280701755, 0.3508771929824561, 0.35526315789473684, 0.3508771929824561, 0.3508771929824561, 0.44298245614035087, 0.32894736842105265, 0.30701754385964913, 0.2149122807017544, 0.04824561403508772, 0.02631578947368421, 0.017543859649122806, 0.017543859649122806, 0.017543859649122806, 0.017543859649122806, 0.017543859649122806, 0.017543859649122806, 0.013157894736842105, 0.008771929824561403, 0.008771929824561403, 0.07894736842105263, 0.07894736842105263, 0.07456140350877193, 0.07017543859649122, 0.07017543859649122, 0.07017543859649122, 0.013157894736842105, 0.013157894736842105, 0.013157894736842105, 0.013157894736842105, 0.013157894736842105, 0.017543859649122806, 0.013157894736842105, 0.013157894736842105, 0.013157894736842105, 0.013157894736842105, 0.8947368421052632, 0.013157894736842105, 0.013157894736842105, 0.013157894736842105, 0.013157894736842105, 0.013157894736842105, 0.013157894736842105, 0.8947368421052632, 0.013157894736842105, 0.881578947368421, 0.013157894736842105, 0.9342105263157895, 0.013157894736842105, 0.013157894736842105, 0.013157894736842105, 0.013157894736842105, 0.013157894736842105, 0.013157894736842105, 0.013157894736842105, 0.013157894736842105, 0.013157894736842105, 0.013157894736842105, 0.013157894736842105, 0.017543859649122806, 0.017543859649122806, 0.021929824561403508, 0.03070175438596491, 0.043859649122807015, 0.08333333333333333, 0.13157894736842105, 0.19736842105263158, 0.2412280701754386, 0.2631578947368421, 0.3026315789473684, 0.3157894736842105, 0.3333333333333333, 0.37719298245614036, 0.4649122807017544, 0.5043859649122807, 0.5482456140350878, 0.5657894736842105, 0.5789473684210527, 0.5877192982456141, 0.6008771929824561, 0.6052631578947368, 0.6096491228070176, 0.6140350877192983, 0.6140350877192983, 0.618421052631579, 0.618421052631579, 0.6228070175438597, 0.6228070175438597, 0.6228070175438597, 0.6228070175438597, 0.6271929824561403, 0.6403508771929824, 0.6666666666666666], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Reprolysin_2.gap.json b/pfam_gap_rates/Reprolysin_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e9ac5f14d468e29f770dc7997798e268fe2c3b08
--- /dev/null
+++ b/pfam_gap_rates/Reprolysin_2.gap.json
@@ -0,0 +1 @@
+{"family": "Reprolysin_2", "n_seqs": 182, "length": 260, "gap_rates": [0.9340659340659341, 0.8571428571428571, 0.8076923076923077, 0.7032967032967034, 0.6593406593406593, 0.5934065934065934, 0.5659340659340659, 0.4835164835164835, 0.41208791208791207, 0.36813186813186816, 0.3516483516483517, 0.34615384615384615, 0.34615384615384615, 0.34065934065934067, 0.34065934065934067, 0.34065934065934067, 0.34065934065934067, 0.34065934065934067, 0.34065934065934067, 0.8791208791208791, 0.8956043956043956, 0.9175824175824175, 0.945054945054945, 0.9340659340659341, 0.9010989010989011, 0.8791208791208791, 0.8736263736263736, 0.4065934065934066, 0.3516483516483517, 0.3516483516483517, 0.3516483516483517, 0.3516483516483517, 0.3516483516483517, 0.8956043956043956, 0.8901098901098901, 0.34065934065934067, 0.32967032967032966, 0.3241758241758242, 0.3241758241758242, 0.3516483516483517, 0.7252747252747253, 0.33516483516483514, 0.5989010989010989, 0.6208791208791209, 0.8296703296703297, 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\ No newline at end of file
diff --git a/pfam_gap_rates/RhgB_N.gap.json b/pfam_gap_rates/RhgB_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..71d54703f734ecccf4a6a49ea9da040121e2a127
--- /dev/null
+++ b/pfam_gap_rates/RhgB_N.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Rhodanese.gap.json b/pfam_gap_rates/Rhodanese.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f45a72a5e21abed99c903b019d5955b1fcbb9e3d
--- /dev/null
+++ b/pfam_gap_rates/Rhodanese.gap.json
@@ -0,0 +1 @@
+{"family": "Rhodanese", "n_seqs": 5000, "length": 152, "gap_rates": [0.8406, 0.6498, 0.5188, 0.43, 0.3746, 0.3312, 0.292, 0.2636, 0.239, 0.909, 0.2134, 0.1752, 0.1478, 0.1672, 0.2204, 0.096, 0.8648, 0.9374, 0.7496, 0.0288, 0.0276, 0.0266, 0.0266, 0.0252, 0.9414, 0.9482, 0.9434, 0.9322, 0.0228, 0.033, 0.0282, 0.0286, 0.94, 0.0266, 0.867, 0.8688, 0.8692, 0.8754, 0.9296, 0.936, 0.8844, 0.8704, 0.869, 0.868, 0.866, 0.0198, 0.0174, 0.8894, 0.0168, 0.019, 0.0162, 0.014, 0.0118, 0.0124, 0.0128, 0.01, 0.0102, 0.8052, 0.8728, 0.9084, 0.949, 0.9374, 0.8898, 0.842, 0.7616, 0.6336, 0.6438, 0.6276, 0.5822, 0.5672, 0.5388, 0.5186, 0.4848, 0.4632, 0.4238, 0.3174, 0.2756, 0.2598, 0.0328, 0.0192, 0.0244, 0.0204, 0.0186, 0.0206, 0.0174, 0.0202, 0.0276, 0.038, 0.0524, 0.1028, 0.8388, 0.8938, 0.8704, 0.6968, 0.5646, 0.4824, 0.1662, 0.0664, 0.0166, 0.0094, 0.0088, 0.0086, 0.0088, 0.0092, 0.009, 0.0102, 0.0112, 0.0118, 0.0126, 0.0134, 0.0142, 0.7712, 0.0338, 0.0222, 0.0188, 0.0182, 0.9264, 0.8656, 0.0196, 0.0256, 0.0256, 0.0242, 0.021, 0.9276, 0.9354, 0.9436, 0.9472, 0.9402, 0.9324, 0.9204, 0.0856, 0.9284, 0.8854, 0.0246, 0.0248, 0.2882, 0.0346, 0.028, 0.8718, 0.0312, 0.0328, 0.0364, 0.0418, 0.058, 0.0538, 0.061, 0.0674, 0.0806, 0.1088, 0.1366, 0.2314, 0.4722], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Ribonuc_red_sm.gap.json b/pfam_gap_rates/Ribonuc_red_sm.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..cc39d0f91130eed476da9cacedf03bda1b6e725f
--- /dev/null
+++ b/pfam_gap_rates/Ribonuc_red_sm.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Ribonuclease.gap.json b/pfam_gap_rates/Ribonuclease.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..926ebcba40418587d62e226c617501e126da645d
--- /dev/null
+++ b/pfam_gap_rates/Ribonuclease.gap.json
@@ -0,0 +1 @@
+{"family": "Ribonuclease", "n_seqs": 387, "length": 109, "gap_rates": [0.3669250645994832, 0.3281653746770026, 0.32558139534883723, 0.3049095607235142, 0.24806201550387597, 0.2041343669250646, 0.165374677002584, 0.16020671834625322, 0.1343669250645995, 0.13178294573643412, 0.12661498708010335, 0.11886304909560723, 0.1111111111111111, 0.09819121447028424, 0.09560723514211886, 0.58656330749354, 0.5633074935400517, 0.5503875968992248, 0.5348837209302325, 0.524547803617571, 0.8863049095607235, 0.7545219638242894, 0.06976744186046512, 0.06201550387596899, 0.06976744186046512, 0.08010335917312661, 0.09819121447028424, 0.8242894056847545, 0.8268733850129198, 0.8191214470284238, 0.49870801033591733, 0.28165374677002586, 0.39276485788113696, 0.24289405684754523, 0.23772609819121446, 0.21705426356589147, 0.1524547803617571, 0.1421188630490956, 0.012919896640826873, 0.012919896640826873, 0.015503875968992248, 0.012919896640826873, 0.012919896640826873, 0.012919896640826873, 0.7906976744186046, 0.015503875968992248, 0.01808785529715762, 0.023255813953488372, 0.056847545219638244, 0.2842377260981912, 0.24031007751937986, 0.031007751937984496, 0.9457364341085271, 0.9483204134366925, 0.9457364341085271, 0.015503875968992248, 0.015503875968992248, 0.012919896640826873, 0.015503875968992248, 0.015503875968992248, 0.015503875968992248, 0.015503875968992248, 0.0103359173126615, 0.0103359173126615, 0.0103359173126615, 0.0103359173126615, 0.0103359173126615, 0.19896640826873385, 0.020671834625323, 0.917312661498708, 0.020671834625323, 0.772609819121447, 0.8578811369509044, 0.7803617571059431, 0.772609819121447, 0.01808785529715762, 0.015503875968992248, 0.012919896640826873, 0.012919896640826873, 0.012919896640826873, 0.015503875968992248, 0.015503875968992248, 0.015503875968992248, 0.42118863049095606, 0.3462532299741602, 0.3281653746770026, 0.26356589147286824, 0.4263565891472868, 0.4082687338501292, 0.35142118863049093, 0.27648578811369506, 0.7364341085271318, 0.8708010335917312, 0.8888888888888888, 0.7777777777777778, 0.6563307493540051, 0.031007751937984496, 0.03359173126614987, 0.03617571059431524, 0.03617571059431524, 0.03617571059431524, 0.17829457364341086, 0.04909560723514212, 0.04392764857881137, 0.05167958656330749, 0.05426356589147287, 0.056847545219638244, 0.11369509043927649, 0.7390180878552972], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Ribophorin_I.gap.json b/pfam_gap_rates/Ribophorin_I.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d24f2752d93afbef39090f7b81cf303603175b20
--- /dev/null
+++ b/pfam_gap_rates/Ribophorin_I.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Ribos_L4_asso_C.gap.json b/pfam_gap_rates/Ribos_L4_asso_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a08192559b2d2b7ef6b1a158b5b24b27ee210297
--- /dev/null
+++ b/pfam_gap_rates/Ribos_L4_asso_C.gap.json
@@ -0,0 +1 @@
+{"family": "Ribos_L4_asso_C", "n_seqs": 402, "length": 77, "gap_rates": [0.2835820895522388, 0.08955223880597014, 0.05223880597014925, 0.04975124378109453, 0.0472636815920398, 0.0472636815920398, 0.03233830845771144, 0.03233830845771144, 0.03233830845771144, 0.01990049751243781, 0.01990049751243781, 0.017412935323383085, 0.017412935323383085, 0.017412935323383085, 0.017412935323383085, 0.017412935323383085, 0.017412935323383085, 0.017412935323383085, 0.017412935323383085, 0.017412935323383085, 0.017412935323383085, 0.017412935323383085, 0.017412935323383085, 0.017412935323383085, 0.017412935323383085, 0.014925373134328358, 0.014925373134328358, 0.009950248756218905, 0.012437810945273632, 0.012437810945273632, 0.012437810945273632, 0.08955223880597014, 0.022388059701492536, 0.5298507462686567, 0.029850746268656716, 0.03482587064676617, 0.04477611940298507, 0.04975124378109453, 0.03233830845771144, 0.6318407960199005, 0.5472636815920398, 0.01990049751243781, 0.017412935323383085, 0.017412935323383085, 0.017412935323383085, 0.017412935323383085, 0.017412935323383085, 0.017412935323383085, 0.017412935323383085, 0.017412935323383085, 0.017412935323383085, 0.024875621890547265, 0.02736318407960199, 0.02736318407960199, 0.02736318407960199, 0.02736318407960199, 0.02736318407960199, 0.029850746268656716, 0.029850746268656716, 0.029850746268656716, 0.03233830845771144, 0.03233830845771144, 0.03233830845771144, 0.03731343283582089, 0.03731343283582089, 0.03731343283582089, 0.03980099502487562, 0.05223880597014925, 0.05472636815920398, 0.07462686567164178, 0.08706467661691543, 0.09950248756218906, 0.16169154228855723, 0.208955223880597, 0.27114427860696516, 0.43781094527363185, 0.6169154228855721], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Ribosomal_60s.gap.json b/pfam_gap_rates/Ribosomal_60s.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..0ebde8139590bbd107a5ef2c0008552bf9636ce7
--- /dev/null
+++ b/pfam_gap_rates/Ribosomal_60s.gap.json
@@ -0,0 +1 @@
+{"family": "Ribosomal_60s", "n_seqs": 1480, "length": 100, "gap_rates": [0.4939189189189189, 0.11621621621621622, 0.08648648648648649, 0.07297297297297298, 0.06689189189189189, 0.06418918918918919, 0.06418918918918919, 0.060810810810810814, 0.060810810810810814, 0.06013513513513514, 0.05878378378378379, 0.05675675675675676, 0.05202702702702703, 0.05202702702702703, 0.051351351351351354, 0.051351351351351354, 0.056081081081081084, 0.05540540540540541, 0.04932432432432433, 0.05, 0.05, 0.05, 0.04864864864864865, 0.04594594594594595, 0.04527027027027027, 0.0445945945945946, 0.04391891891891892, 0.043243243243243246, 0.04391891891891892, 0.041891891891891894, 0.038513513513513516, 0.03918918918918919, 0.037162162162162164, 0.038513513513513516, 0.03648648648648649, 0.03581081081081081, 0.03581081081081081, 0.033783783783783786, 0.03445945945945946, 0.03310810810810811, 0.031081081081081083, 0.027702702702702704, 0.027702702702702704, 0.04054054054054054, 0.04054054054054054, 0.3108108108108108, 0.3364864864864865, 0.5277027027027027, 0.6641891891891892, 0.7736486486486487, 0.8898648648648648, 0.9310810810810811, 0.8486486486486486, 0.7195945945945946, 0.6027027027027027, 0.4804054054054054, 0.13175675675675674, 0.11486486486486487, 0.11013513513513513, 0.038513513513513516, 0.02364864864864865, 0.01891891891891892, 0.018243243243243244, 0.018243243243243244, 0.022972972972972974, 0.020945945945945947, 0.03175675675675676, 0.025675675675675677, 0.02364864864864865, 0.021621621621621623, 0.021621621621621623, 0.021621621621621623, 0.01891891891891892, 0.018243243243243244, 0.022972972972972974, 0.024324324324324326, 0.022972972972972974, 0.0222972972972973, 0.025, 0.025675675675675677, 0.025675675675675677, 0.033783783783783786, 0.04527027027027027, 0.1358108108108108, 0.5297297297297298, 0.8918918918918919, 0.779054054054054, 0.21351351351351353, 0.062162162162162166, 0.05337837837837838, 0.05405405405405406, 0.056081081081081084, 0.060810810810810814, 0.06554054054054054, 0.0722972972972973, 0.8878378378378379, 0.1195945945945946, 0.08986486486486486, 0.0972972972972973, 0.12432432432432433], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Ribosomal_L12_N.gap.json b/pfam_gap_rates/Ribosomal_L12_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e58e869a2c1300008973281e711274fd7a21148e
--- /dev/null
+++ b/pfam_gap_rates/Ribosomal_L12_N.gap.json
@@ -0,0 +1 @@
+{"family": "Ribosomal_L12_N", "n_seqs": 2464, "length": 55, "gap_rates": [0.5815746753246753, 0.2215909090909091, 0.036525974025974024, 0.016233766233766232, 0.007711038961038961, 0.006899350649350649, 0.006087662337662338, 0.006087662337662338, 0.005681818181818182, 0.005681818181818182, 0.005275974025974026, 0.0008116883116883117, 0.0008116883116883117, 0.0008116883116883117, 0.00040584415584415587, 0.00040584415584415587, 0.00040584415584415587, 0.00040584415584415587, 0.00040584415584415587, 0.00040584415584415587, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0012175324675324675, 0.0012175324675324675, 0.002840909090909091, 0.002029220779220779, 0.002840909090909091, 0.004464285714285714, 0.9030032467532467, 0.00974025974025974, 0.04261363636363636, 0.9395292207792207, 0.8729707792207793, 0.060876623376623376, 0.06655844155844155, 0.017857142857142856, 0.017857142857142856, 0.018668831168831168, 0.022727272727272728, 0.8624188311688312, 0.7796266233766234, 0.03530844155844156, 0.061282467532467536, 0.8896103896103896, 0.6643668831168831, 0.05194805194805195, 0.05803571428571429, 0.06371753246753246, 0.08522727272727272, 0.2021103896103896, 0.3900162337662338, 0.7207792207792207], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Ribosomal_L18.gap.json b/pfam_gap_rates/Ribosomal_L18.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..fe2c9ebd032d1bdee4ccca6179483076f3d5f5cb
--- /dev/null
+++ b/pfam_gap_rates/Ribosomal_L18.gap.json
@@ -0,0 +1 @@
+{"family": "Ribosomal_L18", "n_seqs": 516, "length": 192, "gap_rates": [0.36627906976744184, 0.32751937984496127, 0.31007751937984496, 0.3062015503875969, 0.3023255813953488, 0.2926356589147287, 0.28488372093023256, 0.2810077519379845, 0.28294573643410853, 0.7151162790697675, 0.2713178294573643, 0.2693798449612403, 0.25387596899224807, 0.25, 0.24224806201550386, 0.23837209302325582, 0.23255813953488372, 0.2248062015503876, 0.22093023255813954, 0.21705426356589147, 0.1937984496124031, 0.18604651162790697, 0.1821705426356589, 0.1821705426356589, 0.18023255813953487, 0.18023255813953487, 0.1744186046511628, 0.16279069767441862, 0.16666666666666666, 0.15891472868217055, 0.15310077519379844, 0.16085271317829458, 0.14728682170542637, 0.1434108527131783, 0.1375968992248062, 0.13565891472868216, 0.13372093023255813, 0.12403100775193798, 0.11627906976744186, 0.11627906976744186, 0.11046511627906977, 0.10852713178294573, 0.10852713178294573, 0.1065891472868217, 0.10271317829457365, 0.10465116279069768, 0.10077519379844961, 0.10077519379844961, 0.10077519379844961, 0.10077519379844961, 0.10077519379844961, 0.09883720930232558, 0.07364341085271318, 0.07364341085271318, 0.07170542635658915, 0.06976744186046512, 0.06976744186046512, 0.06782945736434108, 0.06782945736434108, 0.06782945736434108, 0.06589147286821706, 0.06589147286821706, 0.06589147286821706, 0.06782945736434108, 0.06976744186046512, 0.06976744186046512, 0.06589147286821706, 0.06782945736434108, 0.06782945736434108, 0.06589147286821706, 0.06782945736434108, 0.1375968992248062, 0.21124031007751937, 0.5775193798449613, 0.5174418604651163, 0.9166666666666666, 0.9321705426356589, 0.9282945736434108, 0.8585271317829457, 0.16085271317829458, 0.07364341085271318, 0.060077519379844964, 0.060077519379844964, 0.060077519379844964, 0.060077519379844964, 0.05813953488372093, 0.05813953488372093, 0.05813953488372093, 0.05813953488372093, 0.05813953488372093, 0.0562015503875969, 0.05813953488372093, 0.05813953488372093, 0.06395348837209303, 0.06201550387596899, 0.06589147286821706, 0.06395348837209303, 0.06589147286821706, 0.16472868217054262, 0.15503875968992248, 0.07170542635658915, 0.0562015503875969, 0.05813953488372093, 0.06395348837209303, 0.06589147286821706, 0.06589147286821706, 0.06201550387596899, 0.06782945736434108, 0.06395348837209303, 0.06395348837209303, 0.06395348837209303, 0.060077519379844964, 0.060077519379844964, 0.060077519379844964, 0.06395348837209303, 0.060077519379844964, 0.060077519379844964, 0.060077519379844964, 0.06201550387596899, 0.060077519379844964, 0.06201550387596899, 0.06976744186046512, 0.06782945736434108, 0.06395348837209303, 0.06201550387596899, 0.06395348837209303, 0.06395348837209303, 0.06395348837209303, 0.06395348837209303, 0.06395348837209303, 0.06395348837209303, 0.06395348837209303, 0.06395348837209303, 0.06589147286821706, 0.06589147286821706, 0.06201550387596899, 0.060077519379844964, 0.060077519379844964, 0.060077519379844964, 0.06782945736434108, 0.07945736434108527, 0.10271317829457365, 0.12015503875968993, 0.13565891472868216, 0.17829457364341086, 0.17635658914728683, 0.18023255813953487, 0.20930232558139536, 0.1821705426356589, 0.187984496124031, 0.1821705426356589, 0.18023255813953487, 0.1821705426356589, 0.18410852713178294, 0.18410852713178294, 0.18410852713178294, 0.18410852713178294, 0.2655038759689923, 0.4806201550387597, 0.4748062015503876, 0.47093023255813954, 0.19767441860465115, 0.187984496124031, 0.187984496124031, 0.1937984496124031, 0.1937984496124031, 0.19573643410852712, 0.1937984496124031, 0.1996124031007752, 0.1996124031007752, 0.1996124031007752, 0.1996124031007752, 0.20348837209302326, 0.20736434108527133, 0.20930232558139536, 0.22093023255813954, 0.22868217054263565, 0.24031007751937986, 0.2441860465116279, 0.23837209302325582, 0.24612403100775193, 0.25387596899224807, 0.28488372093023256, 0.3003875968992248, 0.30426356589147285, 0.30426356589147285, 0.312015503875969, 0.31976744186046513, 0.32170542635658916, 0.33527131782945735, 0.3372093023255814, 0.4418604651162791], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Ribosomal_L18A.gap.json b/pfam_gap_rates/Ribosomal_L18A.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c1b10109e81f9b6d7980ab29645fb51c90acdc31
--- /dev/null
+++ b/pfam_gap_rates/Ribosomal_L18A.gap.json
@@ -0,0 +1 @@
+{"family": "Ribosomal_L18A", "n_seqs": 532, "length": 124, "gap_rates": [0.6109022556390977, 0.2894736842105263, 0.2631578947368421, 0.2631578947368421, 0.2631578947368421, 0.2593984962406015, 0.2575187969924812, 0.2575187969924812, 0.2575187969924812, 0.2575187969924812, 0.2575187969924812, 0.2575187969924812, 0.2593984962406015, 0.2725563909774436, 0.24812030075187969, 0.2462406015037594, 0.2462406015037594, 0.24436090225563908, 0.24436090225563908, 0.24436090225563908, 0.24060150375939848, 0.24060150375939848, 0.24060150375939848, 0.17669172932330826, 0.17481203007518797, 0.17481203007518797, 0.17481203007518797, 0.17481203007518797, 0.17481203007518797, 0.17481203007518797, 0.17669172932330826, 0.17669172932330826, 0.17669172932330826, 0.17669172932330826, 0.17669172932330826, 0.18796992481203006, 0.18984962406015038, 0.18421052631578946, 0.17481203007518797, 0.17481203007518797, 0.17481203007518797, 0.17293233082706766, 0.17481203007518797, 0.17857142857142858, 0.17669172932330826, 0.17857142857142858, 0.16917293233082706, 0.16917293233082706, 0.16917293233082706, 0.16917293233082706, 0.16729323308270677, 0.17293233082706766, 0.17105263157894737, 0.16729323308270677, 0.16729323308270677, 0.16729323308270677, 0.16541353383458646, 0.16353383458646617, 0.16353383458646617, 0.16541353383458646, 0.18045112781954886, 0.17669172932330826, 0.18796992481203006, 0.21804511278195488, 0.21428571428571427, 0.19736842105263158, 0.19172932330827067, 0.17857142857142858, 0.16729323308270677, 0.15789473684210525, 0.15037593984962405, 0.13533834586466165, 0.13345864661654136, 0.12218045112781954, 0.11842105263157894, 0.11278195488721804, 0.10902255639097744, 0.10150375939849623, 0.10714285714285714, 0.10338345864661654, 0.09962406015037593, 0.09398496240601503, 0.08646616541353383, 0.08646616541353383, 0.08646616541353383, 0.08834586466165413, 0.07330827067669173, 0.07706766917293233, 0.07894736842105263, 0.07706766917293233, 0.07706766917293233, 0.07518796992481203, 0.07894736842105263, 0.07894736842105263, 0.07894736842105263, 0.08082706766917293, 0.08082706766917293, 0.08082706766917293, 0.07706766917293233, 0.07142857142857142, 0.07330827067669173, 0.07518796992481203, 0.07518796992481203, 0.08082706766917293, 0.08082706766917293, 0.08082706766917293, 0.08082706766917293, 0.08082706766917293, 0.08082706766917293, 0.08458646616541353, 0.08270676691729323, 0.08270676691729323, 0.08270676691729323, 0.08458646616541353, 0.08646616541353383, 0.08834586466165413, 0.08834586466165413, 0.08834586466165413, 0.08834586466165413, 0.09022556390977443, 0.09398496240601503, 0.09774436090225563, 0.13157894736842105, 0.6015037593984962], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Ribosomal_L19.gap.json b/pfam_gap_rates/Ribosomal_L19.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..8efa5d18e35cbaa89bdcaee30a3cbebe7c68f98c
--- /dev/null
+++ b/pfam_gap_rates/Ribosomal_L19.gap.json
@@ -0,0 +1 @@
+{"family": "Ribosomal_L19", "n_seqs": 2518, "length": 117, "gap_rates": [0.8300238284352661, 0.39753772835583795, 0.3288324066719619, 0.28832406671961874, 0.2561556791104051, 0.21842732327243844, 0.20413026211278792, 0.18943606036536934, 0.18149324861000793, 0.17037331215250198, 0.1664019062748213, 0.8792692613185068, 0.9396346306592533, 0.9400317712470214, 0.8852263701350278, 0.8542494042891183, 0.14058776806989676, 0.12073073868149325, 0.09690230341540905, 0.07545671167593328, 0.05798252581413821, 0.04805401111993646, 0.03971405877680699, 0.036934074662430504, 0.03653693407466243, 0.03494837172359015, 0.03494837172359015, 0.034551231135822084, 0.03335980937251787, 0.03335980937251787, 0.0329626687847498, 0.03216838760921366, 0.03177124702144559, 0.03335980937251787, 0.03772835583796664, 0.03613979348689436, 0.03613979348689436, 0.11477362986497221, 0.048451151707704525, 0.046068308181096106, 0.044876886417791896, 0.04408260524225576, 0.04050833995234313, 0.028196981731532962, 0.007545671167593328, 0.007148530579825258, 0.006751389992057188, 0.006751389992057188, 0.005559968228752979, 0.005957108816521049, 0.006354249404289118, 0.006354249404289118, 0.006354249404289118, 0.006751389992057188, 0.008737092930897538, 0.008737092930897538, 0.008737092930897538, 0.009928514694201748, 0.007545671167593328, 0.006751389992057188, 0.006751389992057188, 0.006354249404289118, 0.006354249404289118, 0.006354249404289118, 0.005957108816521049, 0.006354249404289118, 0.005957108816521049, 0.949166004765687, 0.006751389992057188, 0.006751389992057188, 0.006751389992057188, 0.006354249404289118, 0.005957108816521049, 0.005957108816521049, 0.005957108816521049, 0.005957108816521049, 0.005957108816521049, 0.005957108816521049, 0.006751389992057188, 0.006751389992057188, 0.006751389992057188, 0.007148530579825258, 0.007545671167593328, 0.007942811755361398, 0.007545671167593328, 0.010325655281969817, 0.008737092930897538, 0.008339952343129467, 0.008339952343129467, 0.007942811755361398, 0.007942811755361398, 0.007942811755361398, 0.009531374106433678, 0.013502779984114376, 0.014297061159650517, 0.014694201747418586, 0.014297061159650517, 0.015091342335186657, 0.015091342335186657, 0.015091342335186657, 0.015885623510722795, 0.016282764098490866, 0.016282764098490866, 0.016679904686258934, 0.017077045274027005, 0.021842732327243843, 0.03256552819698173, 0.061953931691818905, 0.09809372517871326, 0.11556791104050834, 0.13343923749007147, 0.13820492454328834, 0.15528196981731532, 0.17712470214455917, 0.20015885623510724, 0.23669579030976967, 0.5416997617156474], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Ribosomal_L23eN.gap.json b/pfam_gap_rates/Ribosomal_L23eN.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..9306e162e24e7c21dfe57d5bbdb39ae996fdb172
--- /dev/null
+++ b/pfam_gap_rates/Ribosomal_L23eN.gap.json
@@ -0,0 +1 @@
+{"family": "Ribosomal_L23eN", "n_seqs": 393, "length": 52, "gap_rates": [0.72264631043257, 0.2875318066157761, 0.09414758269720101, 0.06361323155216285, 0.05343511450381679, 0.05089058524173028, 0.04834605597964377, 0.04580152671755725, 0.03816793893129771, 0.03307888040712468, 0.03307888040712468, 0.03816793893129771, 0.030534351145038167, 0.02544529262086514, 0.022900763358778626, 0.9491094147582697, 0.022900763358778626, 0.03816793893129771, 0.027989821882951654, 0.030534351145038167, 0.035623409669211195, 0.02544529262086514, 0.09414758269720101, 0.027989821882951654, 0.02544529262086514, 0.027989821882951654, 0.030534351145038167, 0.027989821882951654, 0.02544529262086514, 0.02544529262086514, 0.02544529262086514, 0.02544529262086514, 0.02544529262086514, 0.02544529262086514, 0.02544529262086514, 0.027989821882951654, 0.02544529262086514, 0.027989821882951654, 0.027989821882951654, 0.030534351145038167, 0.03307888040712468, 0.03307888040712468, 0.035623409669211195, 0.035623409669211195, 0.035623409669211195, 0.035623409669211195, 0.05343511450381679, 0.07124681933842239, 0.08651399491094147, 0.09669211195928754, 0.16030534351145037, 0.4300254452926209], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Ribosomal_L27A.gap.json b/pfam_gap_rates/Ribosomal_L27A.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..fbc7fd24cd81e8fdf7b202008b8a96d9d87f2cf7
--- /dev/null
+++ b/pfam_gap_rates/Ribosomal_L27A.gap.json
@@ -0,0 +1 @@
+{"family": "Ribosomal_L27A", "n_seqs": 3129, "length": 151, "gap_rates": [0.6359859379993609, 0.1975071907957814, 0.0696708213486737, 0.06263982102908278, 0.061361457334611694, 0.057845957174816234, 0.0572067753275807, 0.05752636625119847, 0.05624800255672739, 0.05337168424416747, 0.0530520933205497, 0.05177372962607862, 0.05113454777884308, 0.0488974113135187, 0.04729945669542985, 0.13774368807925855, 0.15883668903803133, 0.8520294023649728, 0.8472355385107063, 0.09204218600191755, 0.07318632150846915, 0.15819750719079578, 0.8315755832534356, 0.07031000319590924, 0.04538191115372323, 0.04218600191754554, 0.8520294023649728, 0.0405880472994567, 0.22946628315755832, 0.22690955576861618, 0.0655161393416427, 0.06263982102908278, 0.03387663790348354, 0.19942473633748803, 0.19367209971236818, 0.18376478108021732, 0.18280600830936403, 0.17929050814956854, 0.17641418983700863, 0.17066155321188878, 0.1693831895174177, 0.7813998082454459, 0.16810482582294664, 0.024928092042186004, 0.024928092042186004, 0.02588686481303931, 0.8897411313518696, 0.8066474912112496, 0.031000319590923617, 0.3521891978267817, 0.0894854586129754, 0.34260147011824865, 0.08596995845317992, 0.024928092042186004, 0.026845637583892617, 0.023330137424097154, 0.9153084052412912, 0.9271332694151486, 0.8996484499840205, 0.019814637264301695, 0.019814637264301695, 0.019175455417066157, 0.01821668264621285, 0.01757750079897731, 0.01757750079897731, 0.01757750079897731, 0.016618728028124002, 0.016618728028124002, 0.3461169702780441, 0.36625119846596355, 0.3911792905081496, 0.3972515180568872, 0.4097155640779802, 0.32406519654841803, 0.16554809843400448, 0.2246724193032918, 0.38191115372323425, 0.9031639501438159, 0.3652924256951103, 0.2786832853946948, 0.8449984020453819, 0.8897411313518696, 0.9232981783317353, 0.8596995845317993, 0.8357302652604666, 0.15180568871844038, 0.8865452221156919, 0.8501118568232662, 0.061361457334611694, 0.02524768296580377, 0.02205177372962608, 0.020773410035155003, 0.020773410035155003, 0.02141259188239054, 0.02237136465324385, 0.1776925535314797, 0.17545541706615533, 0.1693831895174177, 0.16682646212847554, 0.16267178012144456, 0.15627996164908917, 0.18152764461489293, 0.18983700862895495, 0.8402045381911154, 0.9121124960051135, 0.8868648130393096, 0.37488015340364333, 0.1850431447746884, 0.17609459891339085, 0.018855864493448386, 0.018855864493448386, 0.7989773090444231, 0.019175455417066157, 0.01821668264621285, 0.017897091722595078, 0.01821668264621285, 0.018855864493448386, 0.019814637264301695, 0.8964525407478428, 0.8910194950463407, 0.018855864493448386, 0.019495046340683924, 0.019814637264301695, 0.017897091722595078, 0.9392777245126238, 0.017897091722595078, 0.9207414509427932, 0.016299137104506232, 0.016618728028124002, 0.01725790987535954, 0.019175455417066157, 0.020773410035155003, 0.02588686481303931, 0.03899009268136785, 0.023330137424097154, 0.023010546500479387, 0.024928092042186004, 0.02588686481303931, 0.029082774049217, 0.03036113774368808, 0.03036113774368808, 0.032278683285394696, 0.033237456056248005, 0.03483541067433685, 0.035794183445190156, 0.039309683604985615, 0.04122722914669223, 0.04538191115372323, 0.04729945669542985, 0.054010866091403, 0.20198146372643017], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Ribosomal_L28.gap.json b/pfam_gap_rates/Ribosomal_L28.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b020eaecb67d278de29c589f8a81037ea861b7d8
--- /dev/null
+++ b/pfam_gap_rates/Ribosomal_L28.gap.json
@@ -0,0 +1 @@
+{"family": "Ribosomal_L28", "n_seqs": 2250, "length": 65, "gap_rates": [0.4111111111111111, 0.1791111111111111, 0.14666666666666667, 0.116, 0.06533333333333333, 0.05333333333333334, 0.042222222222222223, 0.9431111111111111, 0.035555555555555556, 0.033777777777777775, 0.03244444444444444, 0.016888888888888887, 0.016444444444444446, 0.016444444444444446, 0.015111111111111112, 0.014222222222222223, 0.013333333333333334, 0.011555555555555555, 0.011555555555555555, 0.011555555555555555, 0.9497777777777778, 0.928, 0.012444444444444444, 0.018666666666666668, 0.9426666666666667, 0.9275555555555556, 0.014666666666666666, 0.005333333333333333, 0.004888888888888889, 0.0057777777777777775, 0.008, 0.005333333333333333, 0.0022222222222222222, 0.0022222222222222222, 0.0017777777777777779, 0.0017777777777777779, 0.00044444444444444447, 0.00044444444444444447, 0.0008888888888888889, 0.0013333333333333333, 0.0013333333333333333, 0.003111111111111111, 0.0035555555555555557, 0.4048888888888889, 0.3648888888888889, 0.021777777777777778, 0.016, 0.016444444444444446, 0.018666666666666668, 0.010222222222222223, 0.007555555555555556, 0.008, 0.008, 0.006666666666666667, 0.006666666666666667, 0.0071111111111111115, 0.008, 0.008444444444444444, 0.008888888888888889, 0.009777777777777778, 0.015111111111111112, 0.033777777777777775, 0.09822222222222222, 0.436, 0.8408888888888889], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Ribosomal_L35Ae.gap.json b/pfam_gap_rates/Ribosomal_L35Ae.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ee14195b222a2ada86ea0ed573319699c6084a3b
--- /dev/null
+++ b/pfam_gap_rates/Ribosomal_L35Ae.gap.json
@@ -0,0 +1 @@
+{"family": "Ribosomal_L35Ae", "n_seqs": 431, "length": 104, "gap_rates": [0.1531322505800464, 0.12761020881670534, 0.08584686774941995, 0.048723897911832945, 0.03944315545243619, 0.03944315545243619, 0.03944315545243619, 0.03944315545243619, 0.037122969837587005, 0.03480278422273782, 0.03248259860788863, 0.027842227378190254, 0.027842227378190254, 0.025522041763341066, 0.025522041763341066, 0.027842227378190254, 0.025522041763341066, 0.030162412993039442, 0.030162412993039442, 0.030162412993039442, 0.027842227378190254, 0.027842227378190254, 0.027842227378190254, 0.027842227378190254, 0.027842227378190254, 0.025522041763341066, 0.025522041763341066, 0.030162412993039442, 0.02320185614849188, 0.018561484918793503, 0.02320185614849188, 0.02320185614849188, 0.02088167053364269, 0.018561484918793503, 0.02088167053364269, 0.018561484918793503, 0.02088167053364269, 0.02320185614849188, 0.025522041763341066, 0.025522041763341066, 0.025522041763341066, 0.025522041763341066, 0.02088167053364269, 0.027842227378190254, 0.03944315545243619, 0.04176334106728538, 0.02320185614849188, 0.016241299303944315, 0.018561484918793503, 0.07888631090487239, 0.07424593967517401, 0.09744779582366589, 0.8793503480278422, 0.0951276102088167, 0.09280742459396751, 0.08352668213457076, 0.7424593967517401, 0.7447795823665894, 0.8631090487238979, 0.9466357308584686, 0.9095127610208816, 0.8167053364269141, 0.7424593967517401, 0.7424593967517401, 0.05104408352668213, 0.03480278422273782, 0.030162412993039442, 0.025522041763341066, 0.025522041763341066, 0.02320185614849188, 0.02320185614849188, 0.02088167053364269, 0.02320185614849188, 0.02320185614849188, 0.02088167053364269, 0.02320185614849188, 0.02320185614849188, 0.02320185614849188, 0.02088167053364269, 0.025522041763341066, 0.027842227378190254, 0.030162412993039442, 0.027842227378190254, 0.030162412993039442, 0.030162412993039442, 0.03248259860788863, 0.03480278422273782, 0.03480278422273782, 0.037122969837587005, 0.037122969837587005, 0.037122969837587005, 0.037122969837587005, 0.037122969837587005, 0.037122969837587005, 0.03944315545243619, 0.03944315545243619, 0.04408352668213457, 0.06496519721577726, 0.06960556844547564, 0.0765661252900232, 0.07888631090487239, 0.08816705336426914, 0.0951276102088167, 0.2552204176334107], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Ribosomal_L4.gap.json b/pfam_gap_rates/Ribosomal_L4.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..1f90f130e87ed8faf248fcdeaed0f4bb8dfd48a1
--- /dev/null
+++ b/pfam_gap_rates/Ribosomal_L4.gap.json
@@ -0,0 +1 @@
+{"family": "Ribosomal_L4", "n_seqs": 3154, "length": 255, "gap_rates": [0.5025364616360177, 0.258719086873811, 0.16550412175015852, 0.27742549143944195, 0.12143310082435003, 0.11477488902980343, 0.10875079264426125, 0.10336081166772353, 0.0979708306911858, 0.07958148383005707, 0.06848446417247939, 0.06246036778693722, 0.056753329105897275, 0.05358275206087508, 0.049778059606848446, 0.04724159797083069, 0.046290424857324035, 0.04597336715282181, 0.044071020925808495, 0.043436905516804056, 0.04216867469879518, 0.04185161699429296, 0.04185161699429296, 0.04153455928979074, 0.04026632847178187, 0.03868103994927077, 0.03836398224476855, 0.03709575142675967, 0.03646163601775523, 0.03551046290424857, 0.03551046290424857, 0.035193405199746355, 0.03551046290424857, 0.034559289790741916, 0.03487634749524413, 0.03487634749524413, 0.844007609384908, 0.03392517438173748, 0.03329105897273304, 0.03202282815472416, 0.032339885859226376, 0.03202282815472416, 0.03138871274571972, 0.03170577045022194, 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\ No newline at end of file
diff --git a/pfam_gap_rates/Ribosomal_L44.gap.json b/pfam_gap_rates/Ribosomal_L44.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e60c599f0ae32e10774f948b87e39b7730d01608
--- /dev/null
+++ b/pfam_gap_rates/Ribosomal_L44.gap.json
@@ -0,0 +1 @@
+{"family": "Ribosomal_L44", "n_seqs": 490, "length": 80, "gap_rates": [0.19183673469387755, 0.0673469387755102, 0.05918367346938776, 0.04693877551020408, 0.044897959183673466, 0.044897959183673466, 0.044897959183673466, 0.044897959183673466, 0.03877551020408163, 0.036734693877551024, 0.036734693877551024, 0.04285714285714286, 0.036734693877551024, 0.03469387755102041, 0.03469387755102041, 0.03469387755102041, 0.0326530612244898, 0.0326530612244898, 0.0326530612244898, 0.030612244897959183, 0.030612244897959183, 0.024489795918367346, 0.024489795918367346, 0.026530612244897958, 0.026530612244897958, 0.024489795918367346, 0.024489795918367346, 0.05714285714285714, 0.026530612244897958, 0.024489795918367346, 0.024489795918367346, 0.02040816326530612, 0.022448979591836733, 0.9408163265306122, 0.9408163265306122, 0.02040816326530612, 0.02040816326530612, 0.02040816326530612, 0.018367346938775512, 0.0163265306122449, 0.0163265306122449, 0.014285714285714285, 0.014285714285714285, 0.012244897959183673, 0.08979591836734693, 0.022448979591836733, 0.022448979591836733, 0.024489795918367346, 0.022448979591836733, 0.022448979591836733, 0.022448979591836733, 0.024489795918367346, 0.026530612244897958, 0.026530612244897958, 0.02857142857142857, 0.02857142857142857, 0.0326530612244898, 0.0326530612244898, 0.0326530612244898, 0.03877551020408163, 0.9020408163265307, 0.9020408163265307, 0.030612244897959183, 0.030612244897959183, 0.030612244897959183, 0.030612244897959183, 0.030612244897959183, 0.030612244897959183, 0.030612244897959183, 0.030612244897959183, 0.030612244897959183, 0.0326530612244898, 0.04081632653061224, 0.04081632653061224, 0.04285714285714286, 0.04693877551020408, 0.04693877551020408, 0.05102040816326531, 0.053061224489795916, 0.18979591836734694], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Ribosomal_L6e.gap.json b/pfam_gap_rates/Ribosomal_L6e.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..124dfef77135be408000be24da2351ebc0885c37
--- /dev/null
+++ b/pfam_gap_rates/Ribosomal_L6e.gap.json
@@ -0,0 +1 @@
+{"family": "Ribosomal_L6e", "n_seqs": 612, "length": 124, "gap_rates": [0.17973856209150327, 0.1454248366013072, 0.12908496732026145, 0.12254901960784313, 0.11764705882352941, 0.11437908496732026, 0.09477124183006536, 0.08823529411764706, 0.07026143790849673, 0.07026143790849673, 0.06699346405228758, 0.06535947712418301, 0.06535947712418301, 0.06535947712418301, 0.06372549019607843, 0.06209150326797386, 0.06045751633986928, 0.06045751633986928, 0.06045751633986928, 0.06045751633986928, 0.058823529411764705, 0.06045751633986928, 0.06209150326797386, 0.06535947712418301, 0.06372549019607843, 0.06209150326797386, 0.8741830065359477, 0.8790849673202614, 0.869281045751634, 0.06209150326797386, 0.06372549019607843, 0.05228758169934641, 0.05228758169934641, 0.33169934640522875, 0.05555555555555555, 0.05065359477124183, 0.05065359477124183, 0.04738562091503268, 0.049019607843137254, 0.05065359477124183, 0.04738562091503268, 0.042483660130718956, 0.04411764705882353, 0.05718954248366013, 0.0718954248366013, 0.08169934640522876, 0.0784313725490196, 0.08333333333333333, 0.30718954248366015, 0.9313725490196079, 0.7826797385620915, 0.12908496732026145, 0.07352941176470588, 0.06535947712418301, 0.06862745098039216, 0.07026143790849673, 0.0718954248366013, 0.07679738562091504, 0.761437908496732, 0.934640522875817, 0.9444444444444444, 0.9493464052287581, 0.9411764705882353, 0.9133986928104575, 0.6813725490196079, 0.07679738562091504, 0.10130718954248366, 0.10457516339869281, 0.12254901960784313, 0.10457516339869281, 0.1111111111111111, 0.9264705882352942, 0.14215686274509803, 0.09967320261437909, 0.09640522875816994, 0.09640522875816994, 0.09967320261437909, 0.10294117647058823, 0.10784313725490197, 0.10784313725490197, 0.10947712418300654, 0.11437908496732026, 0.11601307189542484, 0.11764705882352941, 0.119281045751634, 0.119281045751634, 0.11764705882352941, 0.12254901960784313, 0.13071895424836602, 0.13398692810457516, 0.14052287581699346, 0.14052287581699346, 0.1437908496732026, 0.1437908496732026, 0.1454248366013072, 0.14869281045751634, 0.15359477124183007, 0.8578431372549019, 0.8627450980392157, 0.8415032679738562, 0.1568627450980392, 0.15196078431372548, 0.1568627450980392, 0.16339869281045752, 0.16666666666666666, 0.16830065359477125, 0.1715686274509804, 0.20588235294117646, 0.20588235294117646, 0.21405228758169934, 0.21405228758169934, 0.21405228758169934, 0.21568627450980393, 0.21568627450980393, 0.2173202614379085, 0.21895424836601307, 0.2222222222222222, 0.22712418300653595, 0.22875816993464052, 0.23202614379084968, 0.23202614379084968, 0.23529411764705882, 0.24673202614379086, 0.25980392156862747], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Ribosomal_L7Ae.gap.json b/pfam_gap_rates/Ribosomal_L7Ae.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..fac4c6389af337d37e204eb43d06632d6b188f73
--- /dev/null
+++ b/pfam_gap_rates/Ribosomal_L7Ae.gap.json
@@ -0,0 +1 @@
+{"family": "Ribosomal_L7Ae", "n_seqs": 3290, "length": 102, "gap_rates": [0.9395136778115502, 0.5465045592705167, 0.40182370820668695, 0.343161094224924, 0.2899696048632219, 0.2650455927051672, 0.239209726443769, 0.22188449848024316, 0.18875379939209727, 0.15683890577507598, 0.12158054711246201, 0.10364741641337386, 0.09361702127659574, 0.0817629179331307, 0.07386018237082066, 0.06231003039513678, 0.04802431610942249, 0.044072948328267476, 0.04346504559270517, 0.04468085106382979, 0.04164133738601824, 0.03951367781155015, 0.03738601823708207, 0.036170212765957444, 0.03525835866261398, 0.034650455927051675, 0.03282674772036474, 0.030699088145896655, 0.03100303951367781, 0.03100303951367781, 0.9434650455927052, 0.025227963525835867, 0.020972644376899698, 0.01458966565349544, 0.0121580547112462, 0.012462006079027355, 0.011854103343465046, 0.009726443768996961, 0.009726443768996961, 0.01094224924012158, 0.01094224924012158, 0.011246200607902736, 0.011854103343465046, 0.0121580547112462, 0.013069908814589666, 0.013677811550151976, 0.013069908814589666, 0.013069908814589666, 0.01398176291793313, 0.9389057750759878, 0.9419452887537993, 0.9407294832826748, 0.9379939209726443, 0.39422492401215803, 0.025227963525835867, 0.023100303951367782, 0.020364741641337385, 0.01884498480243161, 0.01762917933130699, 0.016717325227963525, 0.8468085106382979, 0.8398176291793313, 0.01641337386018237, 0.01458966565349544, 0.015805471124620062, 0.016717325227963525, 0.01762917933130699, 0.01762917933130699, 0.019452887537993922, 0.02127659574468085, 0.022492401215805473, 0.023100303951367782, 0.026747720364741642, 0.1817629179331307, 0.03404255319148936, 0.034650455927051675, 0.034954407294832825, 0.036170212765957444, 0.03738601823708207, 0.03860182370820669, 0.03981762917933131, 0.0425531914893617, 0.04559270516717325, 0.04893617021276596, 0.1829787234042553, 0.13586626139817629, 0.7534954407294833, 0.07689969604863221, 0.07234042553191489, 0.07750759878419453, 0.08297872340425531, 0.0945288753799392, 0.11185410334346504, 0.13343465045592706, 0.17082066869300913, 0.2148936170212766, 0.24620060790273557, 0.2924012158054711, 0.34194528875379937, 0.4133738601823708, 0.568693009118541, 0.674468085106383], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Ribosomal_S13.gap.json b/pfam_gap_rates/Ribosomal_S13.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..8fef577345232af9749eb393655b7fa4158adc8b
--- /dev/null
+++ b/pfam_gap_rates/Ribosomal_S13.gap.json
@@ -0,0 +1 @@
+{"family": "Ribosomal_S13", "n_seqs": 3040, "length": 129, "gap_rates": [0.12697368421052632, 0.09539473684210527, 0.08914473684210526, 0.08519736842105263, 0.08453947368421053, 0.08190789473684211, 0.08125, 0.07960526315789473, 0.0861842105263158, 0.07861842105263157, 0.07664473684210527, 0.07631578947368421, 0.0756578947368421, 0.07532894736842105, 0.07171052631578947, 0.07138157894736842, 0.07039473684210526, 0.07039473684210526, 0.06973684210526315, 0.06907894736842106, 0.06743421052631579, 0.06710526315789474, 0.06644736842105263, 0.06546052631578947, 0.06546052631578947, 0.06414473684210527, 0.06414473684210527, 0.06348684210526316, 0.06315789473684211, 0.06282894736842105, 0.062171052631578946, 0.062171052631578946, 0.06151315789473684, 0.06118421052631579, 0.06151315789473684, 0.06184210526315789, 0.060526315789473685, 0.06118421052631579, 0.06085526315789474, 0.07697368421052632, 0.05921052631578947, 0.059539473684210524, 0.05921052631578947, 0.059539473684210524, 0.05986842105263158, 0.06019736842105263, 0.06019736842105263, 0.06019736842105263, 0.06019736842105263, 0.06019736842105263, 0.06019736842105263, 0.06019736842105263, 0.06019736842105263, 0.060526315789473685, 0.06019736842105263, 0.060526315789473685, 0.060526315789473685, 0.06019736842105263, 0.062171052631578946, 0.06776315789473684, 0.8299342105263158, 0.8319078947368421, 0.8342105263157895, 0.8342105263157895, 0.8325657894736842, 0.8319078947368421, 0.8309210526315789, 0.8309210526315789, 0.8305921052631579, 0.8309210526315789, 0.8394736842105263, 0.8299342105263158, 0.8289473684210527, 0.8289473684210527, 0.8282894736842106, 0.8259868421052632, 0.825, 0.8240131578947368, 0.8230263157894737, 0.8220394736842105, 0.8213815789473684, 0.7960526315789473, 0.33421052631578946, 0.05460526315789474, 0.05131578947368421, 0.048355263157894735, 0.04868421052631579, 0.04868421052631579, 0.04868421052631579, 0.04868421052631579, 0.048355263157894735, 0.048355263157894735, 0.04736842105263158, 0.04736842105263158, 0.04736842105263158, 0.04703947368421053, 0.04671052631578947, 0.04703947368421053, 0.04703947368421053, 0.04736842105263158, 0.04736842105263158, 0.04703947368421053, 0.04671052631578947, 0.046052631578947366, 0.04671052631578947, 0.04868421052631579, 0.04901315789473684, 0.049342105263157895, 0.0506578947368421, 0.05131578947368421, 0.05230263157894737, 0.05230263157894737, 0.05263157894736842, 0.05296052631578947, 0.05361842105263158, 0.05526315789473684, 0.055592105263157894, 0.05625, 0.058223684210526316, 0.05855263157894737, 0.06118421052631579, 0.05855263157894737, 0.058881578947368424, 0.05921052631578947, 0.05986842105263158, 0.06184210526315789, 0.07138157894736842, 0.08256578947368422, 0.12532894736842104], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Ribosomal_S20p.gap.json b/pfam_gap_rates/Ribosomal_S20p.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..18213fe552c32fc01ce0ff745516843035af4fa7
--- /dev/null
+++ b/pfam_gap_rates/Ribosomal_S20p.gap.json
@@ -0,0 +1 @@
+{"family": "Ribosomal_S20p", "n_seqs": 2177, "length": 84, "gap_rates": [0.2039503904455673, 0.19614147909967847, 0.08865411116214975, 0.053743683968764354, 0.04271933853927423, 0.04088194763435921, 0.03674781809830041, 0.034451079467156635, 0.033991731740927886, 0.032613688562241616, 0.02572347266881029, 0.023426734037666513, 0.022967386311437757, 0.022508038585209004, 0.022508038585209004, 0.022508038585209004, 0.022048690858980247, 0.02067064768029398, 0.01975195222783647, 0.01975195222783647, 0.02067064768029398, 0.020211299954065228, 0.017455213596692696, 0.016995865870463943, 0.016995865870463943, 0.014699127239320165, 0.00964630225080386, 0.009186954524575103, 0.00964630225080386, 0.00964630225080386, 0.008268259072117593, 0.008268259072117593, 0.007349563619660083, 0.008268259072117593, 0.0078089113458888375, 0.008727606798346348, 0.01240238860817639, 0.011943040881947635, 0.13596692696371154, 0.13458888378502526, 0.9333945796968305, 0.27377124483233806, 0.0491502067064768, 0.05144694533762058, 0.04639412034910427, 0.0316949931097841, 0.00964630225080386, 0.009186954524575103, 0.008727606798346348, 0.0078089113458888375, 0.003215434083601286, 0.003215434083601286, 0.002756086357372531, 0.0022967386311437757, 0.0022967386311437757, 0.0022967386311437757, 0.0022967386311437757, 0.0022967386311437757, 0.002756086357372531, 0.002756086357372531, 0.002756086357372531, 0.002756086357372531, 0.004134129536058797, 0.0036747818098300414, 0.0036747818098300414, 0.004134129536058797, 0.004134129536058797, 0.005052824988516307, 0.005052824988516307, 0.005052824988516307, 0.005052824988516307, 0.005052824988516307, 0.005512172714745062, 0.005512172714745062, 0.005512172714745062, 0.005512172714745062, 0.005512172714745062, 0.005512172714745062, 0.005512172714745062, 0.005512172714745062, 0.014699127239320165, 0.03950390445567294, 0.12448323380799264, 0.3688562241616904], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Ribosomal_S26e.gap.json b/pfam_gap_rates/Ribosomal_S26e.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..680b0a87e7ad486a0ee729fc935acacd6beef4d9
--- /dev/null
+++ b/pfam_gap_rates/Ribosomal_S26e.gap.json
@@ -0,0 +1 @@
+{"family": "Ribosomal_S26e", "n_seqs": 477, "length": 108, "gap_rates": [0.20754716981132076, 0.14675052410901468, 0.129979035639413, 0.11740041928721175, 0.11320754716981132, 0.10272536687631027, 0.0880503144654088, 0.07966457023060797, 0.07547169811320754, 0.07547169811320754, 0.07337526205450734, 0.07337526205450734, 0.07337526205450734, 0.07337526205450734, 0.07337526205450734, 0.07337526205450734, 0.07127882599580712, 0.06918238993710692, 0.06708595387840671, 0.06708595387840671, 0.06708595387840671, 0.06079664570230608, 0.05870020964360587, 0.05870020964360587, 0.05660377358490566, 0.05660377358490566, 0.05450733752620545, 0.05241090146750524, 0.05241090146750524, 0.04821802935010482, 0.04612159329140461, 0.039832285115303984, 0.041928721174004195, 0.039832285115303984, 0.039832285115303984, 0.041928721174004195, 0.039832285115303984, 0.0440251572327044, 0.03563941299790356, 0.03773584905660377, 0.03773584905660377, 0.03773584905660377, 0.03773584905660377, 0.016771488469601678, 0.016771488469601678, 0.014675052410901468, 0.016771488469601678, 0.016771488469601678, 0.018867924528301886, 0.014675052410901468, 0.014675052410901468, 0.012578616352201259, 0.012578616352201259, 0.012578616352201259, 0.012578616352201259, 0.012578616352201259, 0.04821802935010482, 0.05660377358490566, 0.05870020964360587, 0.06079664570230608, 0.9350104821802935, 0.027253668763102725, 0.025157232704402517, 0.023060796645702306, 0.023060796645702306, 0.023060796645702306, 0.025157232704402517, 0.027253668763102725, 0.033542976939203356, 0.03563941299790356, 0.031446540880503145, 0.029350104821802937, 0.029350104821802937, 0.029350104821802937, 0.029350104821802937, 0.029350104821802937, 0.033542976939203356, 0.03563941299790356, 0.03773584905660377, 0.039832285115303984, 0.039832285115303984, 0.039832285115303984, 0.039832285115303984, 0.0440251572327044, 0.05241090146750524, 0.050314465408805034, 0.05450733752620545, 0.05870020964360587, 0.05870020964360587, 0.05870020964360587, 0.05870020964360587, 0.06289308176100629, 0.06708595387840671, 0.06708595387840671, 0.07337526205450734, 0.07966457023060797, 0.09224318658280922, 0.1090146750524109, 0.12578616352201258, 0.14046121593291405, 0.18238993710691823, 0.1928721174004193, 0.2222222222222222, 0.2893081761006289, 0.40670859538784065, 0.480083857442348, 0.5932914046121593, 0.9140461215932913], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Ribosomal_S3Ae.gap.json b/pfam_gap_rates/Ribosomal_S3Ae.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a2e82f234dcffc0b2efb2c3416b01f5d9562d023
--- /dev/null
+++ b/pfam_gap_rates/Ribosomal_S3Ae.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Ribosomal_S4.gap.json b/pfam_gap_rates/Ribosomal_S4.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..4408314cd356d37d7de2687d0d86324c5aabfa49
--- /dev/null
+++ b/pfam_gap_rates/Ribosomal_S4.gap.json
@@ -0,0 +1 @@
+{"family": "Ribosomal_S4", "n_seqs": 2901, "length": 100, "gap_rates": [0.4150293002412961, 0.36677007928300587, 0.2881764908652189, 0.2195794553602206, 0.16718372974836263, 0.15408479834539815, 0.1499482936918304, 0.14719062392278526, 0.14650120648052395, 0.145467080317132, 0.1451223715960014, 0.145467080317132, 0.14581178903826267, 0.1451223715960014, 0.14477766287487073, 0.14443295415374008, 0.28162702516373667, 0.2878317821440882, 0.2905894519131334, 0.27197518097207857, 0.26025508445363665, 0.29196828679765596, 0.33264391589107206, 0.6366770079283006, 0.7076870044812134, 0.8066184074457083, 0.8142019993105826, 0.7125129265770423, 0.672182006204757, 0.5118924508790073, 0.3078248879696656, 0.28610823853843503, 0.2568079972423302, 0.2671492588762496, 0.24543260944501896, 0.23922785246466735, 0.23061013443640124, 0.2333678042054464, 0.22716304722509478, 0.2178559117545674, 0.21544295070665287, 0.21854532919682867, 0.21061702861082385, 0.1785591175456739, 0.8752154429507066, 0.9407100999655291, 0.511203033436746, 0.1623578076525336, 0.15856601172009652, 0.15753188555670458, 0.14408824543260945, 0.11961392623233368, 0.006894174422612892, 0.0062047569803516025, 0.0062047569803516025, 0.005170630816959669, 0.7859358841778697, 0.003447087211306446, 0.0031023784901758012, 0.002757669769045157, 0.002757669769045157, 0.0031023784901758012, 0.002757669769045157, 0.002757669769045157, 0.0031023784901758012, 0.003447087211306446, 0.003447087211306446, 0.002757669769045157, 0.002757669769045157, 0.0031023784901758012, 0.0031023784901758012, 0.0031023784901758012, 0.7087211306446053, 0.002412961047914512, 0.002412961047914512, 0.002412961047914512, 0.002412961047914512, 0.002412961047914512, 0.002412961047914512, 0.0031023784901758012, 0.0031023784901758012, 0.003791795932437091, 0.003791795932437091, 0.004825922095829024, 0.007583591864874182, 0.009307135470527405, 0.010341261633919338, 0.011375387797311272, 0.2419855222337125, 0.019303688383316097, 0.023784901758014478, 0.025853154084798345, 0.02688728024819028, 0.028610823853843503, 0.030334367459496726, 0.03688383316097897, 0.05136159944846604, 0.13409169251982075, 0.25163736642537055, 0.25715270596346085], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Ribosomal_S8e.gap.json b/pfam_gap_rates/Ribosomal_S8e.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c149754edebaef230587353d2ac1c2c9c4378590
--- /dev/null
+++ b/pfam_gap_rates/Ribosomal_S8e.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Rif1_N.gap.json b/pfam_gap_rates/Rif1_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e28bb5b10475fca625008d0877f999b4b528ac0d
--- /dev/null
+++ b/pfam_gap_rates/Rif1_N.gap.json
@@ -0,0 +1 @@
+{"family": "Rif1_N", "n_seqs": 174, "length": 448, "gap_rates": [0.6666666666666666, 0.6149425287356322, 0.603448275862069, 0.5804597701149425, 0.5344827586206896, 0.5172413793103449, 0.4885057471264368, 0.4540229885057471, 0.4425287356321839, 0.41954022988505746, 0.41379310344827586, 0.367816091954023, 0.3505747126436782, 0.3505747126436782, 0.3505747126436782, 0.3505747126436782, 0.3505747126436782, 0.3505747126436782, 0.3275862068965517, 0.3275862068965517, 0.3275862068965517, 0.3275862068965517, 0.3275862068965517, 0.3390804597701149, 0.3793103448275862, 0.3620689655172414, 0.3563218390804598, 0.3505747126436782, 0.3333333333333333, 0.3275862068965517, 0.3275862068965517, 0.3333333333333333, 0.29310344827586204, 0.28735632183908044, 0.28735632183908044, 0.27586206896551724, 0.27586206896551724, 0.27586206896551724, 0.27011494252873564, 0.27011494252873564, 0.27586206896551724, 0.27011494252873564, 0.27011494252873564, 0.26436781609195403, 0.9482758620689655, 0.9482758620689655, 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\ No newline at end of file
diff --git a/pfam_gap_rates/Rio2_N.gap.json b/pfam_gap_rates/Rio2_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..536a1af550a56a4ac0c377584e36c2a333bdc9b7
--- /dev/null
+++ b/pfam_gap_rates/Rio2_N.gap.json
@@ -0,0 +1 @@
+{"family": "Rio2_N", "n_seqs": 386, "length": 85, "gap_rates": [0.21502590673575128, 0.12176165803108809, 0.09067357512953368, 0.06476683937823834, 0.06476683937823834, 0.06476683937823834, 0.06476683937823834, 0.06476683937823834, 0.06476683937823834, 0.06476683937823834, 0.06217616580310881, 0.06217616580310881, 0.06217616580310881, 0.06217616580310881, 0.046632124352331605, 0.04404145077720207, 0.025906735751295335, 0.025906735751295335, 0.02072538860103627, 0.02072538860103627, 0.018134715025906734, 0.015544041450777202, 0.015544041450777202, 0.015544041450777202, 0.015544041450777202, 0.015544041450777202, 0.015544041450777202, 0.012953367875647668, 0.012953367875647668, 0.012953367875647668, 0.012953367875647668, 0.012953367875647668, 0.012953367875647668, 0.012953367875647668, 0.012953367875647668, 0.012953367875647668, 0.007772020725388601, 0.8937823834196891, 0.805699481865285, 0.05699481865284974, 0.018134715025906734, 0.018134715025906734, 0.015544041450777202, 0.010362694300518135, 0.010362694300518135, 0.010362694300518135, 0.010362694300518135, 0.010362694300518135, 0.010362694300518135, 0.010362694300518135, 0.010362694300518135, 0.010362694300518135, 0.010362694300518135, 0.010362694300518135, 0.010362694300518135, 0.012953367875647668, 0.012953367875647668, 0.018134715025906734, 0.4378238341968912, 0.018134715025906734, 0.023316062176165803, 0.038860103626943004, 0.04145077720207254, 0.038860103626943004, 0.023316062176165803, 0.023316062176165803, 0.023316062176165803, 0.023316062176165803, 0.023316062176165803, 0.023316062176165803, 0.025906735751295335, 0.025906735751295335, 0.025906735751295335, 0.025906735751295335, 0.025906735751295335, 0.025906735751295335, 0.025906735751295335, 0.025906735751295335, 0.025906735751295335, 0.025906735751295335, 0.025906735751295335, 0.025906735751295335, 0.03626943005181347, 0.06735751295336788, 0.21243523316062177], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/RmlD_sub_bind.gap.json b/pfam_gap_rates/RmlD_sub_bind.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..cdbf61a194b2ccf7264013593f4f83eee082b99b
--- /dev/null
+++ b/pfam_gap_rates/RmlD_sub_bind.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Rotamase_3.gap.json b/pfam_gap_rates/Rotamase_3.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..7f31a04e65a8f4c578d9bff5d06b4f546cb54f87
--- /dev/null
+++ b/pfam_gap_rates/Rotamase_3.gap.json
@@ -0,0 +1 @@
+{"family": "Rotamase_3", "n_seqs": 2278, "length": 132, "gap_rates": [0.9446883230904302, 0.9003511852502195, 0.8757682177348551, 0.8450395083406497, 0.8235294117647058, 0.7875329236172081, 0.7510974539069359, 0.7212467076382791, 0.6501316944688323, 0.543459174714662, 0.9280070237050044, 0.9482001755926251, 0.9337137840210711, 0.9205443371378402, 0.3990342405618964, 0.3305531167690957, 0.2589991220368745, 0.9051799824407375, 0.16988586479367868, 0.14925373134328357, 0.13388937664618086, 0.12335381913959614, 0.11852502194907814, 0.11501316944688324, 0.11369622475856014, 0.11325724319578578, 0.11150131694468832, 0.11194029850746269, 0.16242317822651448, 0.5333625987708516, 0.5500438981562774, 0.8933274802458296, 0.9139596136962248, 0.9367866549604916, 0.9043020193151887, 0.8090430201931519, 0.5842844600526778, 0.533801580333626, 0.48463564530289727, 0.46005267778753295, 0.4359086918349429, 0.4170324846356453, 0.4043020193151888, 0.38762071992976294, 0.334503950834065, 0.9280070237050044, 0.09569798068481124, 0.07067603160667252, 0.01755926251097454, 0.01624231782265145, 0.014486391571553995, 0.012730465320456541, 0.010974539069359086, 0.01009657594381036, 0.00877963125548727, 0.01009657594381036, 0.009218612818261633, 0.012730465320456541, 0.8397717295873574, 0.010974539069359086, 0.012730465320456541, 0.00877963125548727, 0.0052677787532923615, 0.0052677787532923615, 0.0052677787532923615, 0.004389815627743635, 0.003511852502194908, 0.003511852502194908, 0.003511852502194908, 0.018437225636523266, 0.004828797190517998, 0.006145741878841089, 0.006584723441615452, 0.026777875329236173, 0.018437225636523266, 0.020632133450395083, 0.42712906057945565, 0.10755048287971905, 0.024143985952589993, 0.0228270412642669, 0.017998244073748903, 0.016681299385425813, 0.014047410008779631, 0.010974539069359086, 0.010974539069359086, 0.01009657594381036, 0.00877963125548727, 0.010974539069359086, 0.9385425812115891, 0.9126426690079017, 0.01009657594381036, 0.015803336259877086, 0.013169446883230905, 0.012730465320456541, 0.013169446883230905, 0.014925373134328358, 0.014486391571553995, 0.014486391571553995, 0.01624231782265145, 0.01624231782265145, 0.015803336259877086, 0.015364354697102721, 0.015364354697102721, 0.015364354697102721, 0.01624231782265145, 0.9016681299385426, 0.01624231782265145, 0.01755926251097454, 0.019754170324846356, 0.018437225636523266, 0.01887620719929763, 0.11194029850746269, 0.9240561896400351, 0.02370500438981563, 0.9350307287093942, 0.04038630377524144, 0.025460930640913083, 0.025899912203687446, 0.0276558384547849, 0.030728709394205442, 0.03292361720807726, 0.033362598770851626, 0.033801580333625986, 0.03467954345917471, 0.035996488147497806, 0.03775241439859526, 0.06628621597892889, 0.09438103599648814, 0.12818261633011413, 0.21641791044776118, 0.4122036874451273, 0.8156277436347673], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Rsa3.gap.json b/pfam_gap_rates/Rsa3.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e463200a88d2303c25096ca09ae7a25149189300
--- /dev/null
+++ b/pfam_gap_rates/Rsa3.gap.json
@@ -0,0 +1 @@
+{"family": "Rsa3", "n_seqs": 109, "length": 48, "gap_rates": [0.10091743119266056, 0.06422018348623854, 0.01834862385321101, 0.009174311926605505, 0.009174311926605505, 0.009174311926605505, 0.009174311926605505, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.9174311926605505, 0.0, 0.0, 0.0, 0.0, 0.0, 0.009174311926605505, 0.8807339449541285, 0.01834862385321101, 0.01834862385321101, 0.01834862385321101, 0.01834862385321101, 0.01834862385321101, 0.01834862385321101, 0.01834862385321101, 0.01834862385321101, 0.01834862385321101, 0.01834862385321101, 0.01834862385321101, 0.01834862385321101, 0.027522935779816515, 0.027522935779816515, 0.03669724770642202, 0.045871559633027525, 0.05504587155963303, 0.05504587155963303, 0.26605504587155965], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/RseA_N.gap.json b/pfam_gap_rates/RseA_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..1aa9fbc45979af1148e6f90df69f8ffb7e46fa58
--- /dev/null
+++ b/pfam_gap_rates/RseA_N.gap.json
@@ -0,0 +1 @@
+{"family": "RseA_N", "n_seqs": 232, "length": 98, "gap_rates": [0.7758620689655172, 0.728448275862069, 0.9137931034482759, 0.2543103448275862, 0.07758620689655173, 0.04741379310344827, 0.034482758620689655, 0.03017241379310345, 0.03017241379310345, 0.03017241379310345, 0.017241379310344827, 0.017241379310344827, 0.017241379310344827, 0.01293103448275862, 0.01293103448275862, 0.03017241379310345, 0.03017241379310345, 0.04310344827586207, 0.03879310344827586, 0.36637931034482757, 0.41379310344827586, 0.34913793103448276, 0.03017241379310345, 0.021551724137931036, 0.021551724137931036, 0.017241379310344827, 0.017241379310344827, 0.03017241379310345, 0.05172413793103448, 0.017241379310344827, 0.008620689655172414, 0.004310344827586207, 0.008620689655172414, 0.004310344827586207, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.004310344827586207, 0.0, 0.0, 0.008620689655172414, 0.004310344827586207, 0.008620689655172414, 0.08189655172413793, 0.12931034482758622, 0.8232758620689655, 0.12931034482758622, 0.05172413793103448, 0.03017241379310345, 0.03017241379310345, 0.03879310344827586, 0.03879310344827586, 0.03879310344827586, 0.04310344827586207, 0.03879310344827586, 0.9137931034482759, 0.9051724137931034, 0.03879310344827586, 0.03879310344827586, 0.03879310344827586, 0.03879310344827586, 0.03879310344827586, 0.03879310344827586, 0.04310344827586207, 0.05172413793103448, 0.05172413793103448, 0.05603448275862069, 0.07327586206896551, 0.09051724137931035, 0.11637931034482758, 0.14655172413793102, 0.21120689655172414, 0.2413793103448276, 0.3103448275862069, 0.3577586206896552, 0.9353448275862069, 0.9482758620689655, 0.9482758620689655, 0.9181034482758621, 0.5991379310344828, 0.5948275862068966, 0.6077586206896551, 0.6422413793103449, 0.6767241379310345, 0.7112068965517241, 0.7370689655172413, 0.7758620689655172, 0.8318965517241379, 0.8577586206896551, 0.8793103448275862, 0.9482758620689655], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/RsgI_N.gap.json b/pfam_gap_rates/RsgI_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b86bab927f75c2e105f982c3ee80b0fd7cae075f
--- /dev/null
+++ b/pfam_gap_rates/RsgI_N.gap.json
@@ -0,0 +1 @@
+{"family": "RsgI_N", "n_seqs": 146, "length": 57, "gap_rates": [0.19863013698630136, 0.1232876712328767, 0.0821917808219178, 0.03424657534246575, 0.0136986301369863, 0.00684931506849315, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0136986301369863, 0.00684931506849315, 0.5684931506849316, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0684931506849315, 0.08904109589041095, 0.0684931506849315, 0.0547945205479452, 0.0684931506849315, 0.11643835616438356, 0.1506849315068493, 0.18493150684931506, 0.2054794520547945, 0.2328767123287671, 0.23972602739726026, 0.2534246575342466, 0.2602739726027397, 0.3219178082191781, 0.3904109589041096, 0.4041095890410959, 0.4794520547945205, 0.821917808219178, 0.9315068493150684, 0.678082191780822, 0.4726027397260274, 0.547945205479452, 0.5753424657534246, 0.589041095890411, 0.6575342465753424, 0.7808219178082192], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/RteC.gap.json b/pfam_gap_rates/RteC.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..54e83add61d5ea9975994c409f2195c2a8741cd3
--- /dev/null
+++ b/pfam_gap_rates/RteC.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/RuBisCO_large.gap.json b/pfam_gap_rates/RuBisCO_large.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..38f0b66f479472ffb37ca3f21fa777bd0c4d2916
--- /dev/null
+++ b/pfam_gap_rates/RuBisCO_large.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Rubredoxin.gap.json b/pfam_gap_rates/Rubredoxin.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..49d03b66cc3b5d65a82c979551645b4e15139cd2
--- /dev/null
+++ b/pfam_gap_rates/Rubredoxin.gap.json
@@ -0,0 +1 @@
+{"family": "Rubredoxin", "n_seqs": 1332, "length": 47, "gap_rates": [0.3581081081081081, 0.054804804804804805, 0.015765765765765764, 0.015015015015015015, 0.03753753753753754, 0.012762762762762763, 0.012762762762762763, 0.010510510510510511, 0.00975975975975976, 0.00975975975975976, 0.00975975975975976, 0.010510510510510511, 0.014264264264264264, 0.026276276276276277, 0.033783783783783786, 0.054804804804804805, 0.05630630630630631, 0.07132132132132132, 0.07507507507507508, 0.06381381381381382, 0.06231231231231231, 0.060810810810810814, 0.06306306306306306, 0.0457957957957958, 0.033783783783783786, 0.016516516516516516, 0.006756756756756757, 0.006006006006006006, 0.0022522522522522522, 0.0015015015015015015, 0.0007507507507507507, 0.0015015015015015015, 0.0007507507507507507, 0.0015015015015015015, 0.0022522522522522522, 0.0007507507507507507, 0.0007507507507507507, 0.0015015015015015015, 0.0015015015015015015, 0.0015015015015015015, 0.0015015015015015015, 0.0022522522522522522, 0.006006006006006006, 0.015765765765765764, 0.02177177177177177, 0.03078078078078078, 0.03978978978978979], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Rubrerythrin.gap.json b/pfam_gap_rates/Rubrerythrin.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..9bc8d03768cb9bf39c759ccce6b94d1a244226be
--- /dev/null
+++ b/pfam_gap_rates/Rubrerythrin.gap.json
@@ -0,0 +1 @@
+{"family": "Rubrerythrin", "n_seqs": 2759, "length": 147, "gap_rates": [0.5146792316056542, 0.30627038782167454, 0.13700616165277274, 0.10728524827836172, 0.08807538963392533, 0.07937658571946357, 0.05762957593330917, 0.04675607104023197, 0.03443276549474447, 0.029358463211308444, 0.028633562885103298, 0.02790866255889815, 0.026458861906487857, 0.026096411743385284, 0.02464661109097499, 0.02355926060166727, 0.023196810438564697, 0.023196810438564697, 0.023196810438564697, 0.022109459949256977, 0.021747009786154403, 0.02138455962305183, 0.02138455962305183, 0.021022109459949256, 0.02138455962305183, 0.40376948169626675, 0.30953243928959767, 0.30047118521203336, 0.03298296484233418, 0.023196810438564697, 0.03298296484233418, 0.030808263863718738, 0.02138455962305183, 0.020659659296846683, 0.02029720913374411, 0.01920985864443639, 0.019572308807538963, 0.019934758970641536, 0.019572308807538963, 0.019572308807538963, 0.019572308807538963, 0.019572308807538963, 0.019572308807538963, 0.019572308807538963, 0.021022109459949256, 0.021022109459949256, 0.022834360275462123, 0.023921710764769843, 0.025371511417180137, 0.02682131206959043, 0.028271112722000724, 0.03298296484233418, 0.03552011598405219, 0.03986951794128307, 0.04711852120333454, 0.05255527364987314, 0.10511054729974628, 0.1225081551286698, 0.14063066328379847, 0.15295396882928597, 0.18339978252990213, 0.21747009786154403, 0.8735048930772019, 0.7422979340340703, 0.7122145704965567, 0.6908300108735049, 0.6795940558173251, 0.674519753533889, 0.6582094961942733, 0.6357375860819138, 0.6288510329829649, 0.6063791228706052, 0.5462123957955781, 0.5436752446538601, 0.5465748459586807, 0.5465748459586807, 0.5204784342152954, 0.5212033345415006, 0.5030808263863719, 0.48749546937296123, 0.4682856107285248, 0.44218919898513953, 0.4233417905038057, 0.38383472272562524, 0.34686480608916276, 0.23051830373323667, 0.23088075389633925, 0.2261689017760058, 0.9017760057992026, 0.9227981152591519, 0.9304095686843059, 0.9427328742297933, 0.9391083725987677, 0.9256977165639725, 0.909025009061254, 0.8985139543312795, 0.32946719826023924, 0.29213483146067415, 0.22906850308082638, 0.22798115259151866, 0.22254440014498006, 0.2218194998187749, 0.22254440014498006, 0.22290685030808263, 0.2232693004711852, 0.2218194998187749, 0.2276187024284161, 0.2261689017760058, 0.22906850308082638, 0.2602392171076477, 0.23378035520115983, 0.2384922073214933, 0.2276187024284161, 0.22218194998187749, 0.2232693004711852, 0.22363175063428778, 0.2232693004711852, 0.2232693004711852, 0.2384922073214933, 0.23124320405944182, 0.23486770569046755, 0.2272562522653135, 0.2272562522653135, 0.3037332366799565, 0.22906850308082638, 0.22798115259151866, 0.22834360275462123, 0.22834360275462123, 0.2272562522653135, 0.22653135193910837, 0.22653135193910837, 0.2276187024284161, 0.2276187024284161, 0.22834360275462123, 0.22979340340703153, 0.2301558535701341, 0.23088075389633925, 0.23233055454874954, 0.23233055454874954, 0.23378035520115983, 0.23885465748459586, 0.24574121058354476, 0.25516491482421166, 0.28814787966654587, 0.33562885103298296, 0.4291409931134469, 0.8158753171438927], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/RuvX.gap.json b/pfam_gap_rates/RuvX.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..3334c2450cb8b1fb3579c44b01548706284b3b13
--- /dev/null
+++ b/pfam_gap_rates/RuvX.gap.json
@@ -0,0 +1 @@
+{"family": "RuvX", "n_seqs": 2233, "length": 145, "gap_rates": [0.6909986565158979, 0.21764442454097627, 0.06538289296909987, 0.035826242722794444, 0.035826242722794444, 0.03134796238244514, 0.03134796238244514, 0.02821316614420063, 0.02821316614420063, 0.02821316614420063, 0.026421854008060904, 0.02418271383788625, 0.02373488580385132, 0.02328705776981639, 0.020152261531571878, 0.020152261531571878, 0.019704433497536946, 0.019704433497536946, 0.019704433497536946, 0.02104791759964174, 0.032243618450515, 0.06493506493506493, 0.05553067622033139, 0.050156739811912224, 0.05553067622033139, 0.027317510076130765, 0.018808777429467086, 0.018808777429467086, 0.018808777429467086, 0.018360949395432154, 0.017465293327362293, 0.017913121361397222, 0.8652037617554859, 0.018808777429467086, 0.02104791759964174, 0.26153157187639947, 0.23018360949395433, 0.8978952082400359, 0.9234214061800269, 0.7617554858934169, 0.13703537841468877, 0.02373488580385132, 0.018360949395432154, 0.01701746529332736, 0.016569637259292433, 0.013882669055082848, 0.012987012987012988, 0.012091356918943126, 0.012539184952978056, 0.012539184952978056, 0.012539184952978056, 0.012987012987012988, 0.012987012987012988, 0.013434841021047918, 0.013434841021047918, 0.012987012987012988, 0.012539184952978056, 0.012539184952978056, 0.012987012987012988, 0.012539184952978056, 0.012539184952978056, 0.012539184952978056, 0.013882669055082848, 0.026869682042095836, 0.0438871473354232, 0.0483654276757725, 0.05105239587998209, 0.08374384236453201, 0.06986117330944917, 0.05553067622033139, 0.04209583519928348, 0.03672189879086431, 0.03537841468875952, 0.032691446484549934, 0.027317510076130765, 0.02239140170174653, 0.02104791759964174, 0.017465293327362293, 0.013434841021047918, 0.012987012987012988, 0.012539184952978056, 0.012987012987012988, 0.012091356918943126, 0.011643528884908196, 0.011195700850873265, 0.011643528884908196, 0.011643528884908196, 0.012539184952978056, 0.06224809673085535, 0.9395432154052844, 0.9198387819077474, 0.7174205105239588, 0.040304523063143756, 0.03358710255261979, 0.014330497089117778, 0.014330497089117778, 0.014330497089117778, 0.014778325123152709, 0.012539184952978056, 0.012539184952978056, 0.012539184952978056, 0.012539184952978056, 0.012539184952978056, 0.012539184952978056, 0.012539184952978056, 0.012091356918943126, 0.012987012987012988, 0.014330497089117778, 0.014778325123152709, 0.02239140170174653, 0.02283922973578146, 0.028660994178235557, 0.09538737124944022, 0.9364084191670399, 0.13121361397223466, 0.12270488132557097, 0.11733094491715182, 0.12494402149574563, 0.11464397671294223, 0.10210479175996418, 0.9426780116435289, 0.07971339005821765, 0.057769816390506046, 0.04612628750559785, 0.03090013434841021, 0.026421854008060904, 0.942230183609494, 0.941782355575459, 0.027765338110165697, 0.025526197939991044, 0.025078369905956112, 0.025078369905956112, 0.025078369905956112, 0.025078369905956112, 0.025078369905956112, 0.025078369905956112, 0.025526197939991044, 0.025526197939991044, 0.025974025974025976, 0.025974025974025976, 0.026421854008060904, 0.027765338110165697, 0.03179579041648007, 0.0747872816838334, 0.8029556650246306], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/S1-P1_nuclease.gap.json b/pfam_gap_rates/S1-P1_nuclease.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..683774ebf7eeb7b4b20a313226639dc52e723a9e
--- /dev/null
+++ b/pfam_gap_rates/S1-P1_nuclease.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/SAC3_GANP.gap.json b/pfam_gap_rates/SAC3_GANP.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c0e311f453bab79a134fe0fa961414a906b68ef9
--- /dev/null
+++ b/pfam_gap_rates/SAC3_GANP.gap.json
@@ -0,0 +1 @@
+{"family": "SAC3_GANP", "n_seqs": 874, "length": 357, "gap_rates": [0.6155606407322655, 0.597254004576659, 0.5961098398169337, 0.5915331807780321, 0.5812356979405034, 0.568649885583524, 0.5606407322654462, 0.5606407322654462, 0.5572082379862701, 0.5537757437070938, 0.5526315789473685, 0.551487414187643, 0.5434782608695652, 0.5366132723112128, 0.534324942791762, 0.5331807780320366, 0.5320366132723112, 0.5297482837528604, 0.5320366132723112, 0.5308924485125858, 0.5297482837528604, 0.528604118993135, 0.528604118993135, 0.5240274599542334, 0.522883295194508, 0.5572082379862701, 0.8638443935926774, 0.9153318077803204, 0.8878718535469108, 0.851258581235698, 0.7368421052631579, 0.61441647597254, 0.568649885583524, 0.5572082379862701, 0.5560640732265446, 0.5491990846681922, 0.5411899313501144, 0.534324942791762, 0.528604118993135, 0.5205949656750573, 0.5125858123569794, 0.4988558352402746, 0.47139588100686497, 0.4633867276887872, 0.30205949656750575, 0.2791762013729977, 0.2723112128146453, 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\ No newline at end of file
diff --git a/pfam_gap_rates/SAF.gap.json b/pfam_gap_rates/SAF.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d8687a4c79fccaa841362af7b6deb1b480cf19c5
--- /dev/null
+++ b/pfam_gap_rates/SAF.gap.json
@@ -0,0 +1 @@
+{"family": "SAF", "n_seqs": 2124, "length": 77, "gap_rates": [0.6840866290018832, 0.3050847457627119, 0.1228813559322034, 0.05602636534839925, 0.04143126177024482, 0.02919020715630885, 0.023540489642184557, 0.018832391713747645, 0.014595103578154425, 0.014124293785310734, 0.014124293785310734, 0.013182674199623353, 0.012711864406779662, 0.014124293785310734, 0.0160075329566855, 0.01647834274952919, 0.7909604519774012, 0.9157250470809792, 0.9279661016949152, 0.9209039548022598, 0.897834274952919, 0.7815442561205274, 0.08050847457627118, 0.031073446327683617, 0.014124293785310734, 0.01224105461393597, 0.010357815442561206, 0.009887005649717515, 0.00847457627118644, 0.006591337099811676, 0.005178907721280603, 0.004708097928436911, 0.05037664783427495, 0.3436911487758945, 0.333804143126177, 0.4392655367231638, 0.3413370998116761, 0.2547080979284369, 0.00423728813559322, 0.003295668549905838, 0.00423728813559322, 0.003766478342749529, 0.00423728813559322, 0.00847457627118644, 0.07862523540489642, 0.5696798493408662, 0.6087570621468926, 0.6581920903954802, 0.6666666666666666, 0.6290018832391714, 0.5805084745762712, 0.5470809792843692, 0.1224105461393597, 0.01694915254237288, 0.009887005649717515, 0.006120527306967985, 0.005649717514124294, 0.005178907721280603, 0.3375706214689266, 0.007062146892655367, 0.006591337099811676, 0.007062146892655367, 0.008945386064030132, 0.01224105461393597, 0.0160075329566855, 0.017890772128060263, 0.01977401129943503, 0.021657250470809793, 0.025423728813559324, 0.03483992467043315, 0.03954802259887006, 0.09180790960451977, 0.1275894538606403, 0.17749529190207156, 0.24717514124293785, 0.3483992467043315, 0.7886064030131826], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/SAG.gap.json b/pfam_gap_rates/SAG.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..196cd09b72530d4283ca3b2a9941ba4d2ba95458
--- /dev/null
+++ b/pfam_gap_rates/SAG.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/SAM_decarbox.gap.json b/pfam_gap_rates/SAM_decarbox.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a985933355aa5ad6f45ff1d60e35bcd9e9ad6249
--- /dev/null
+++ b/pfam_gap_rates/SAM_decarbox.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/SAP.gap.json b/pfam_gap_rates/SAP.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..2381d09064d34732735dda33295885c172e3b095
--- /dev/null
+++ b/pfam_gap_rates/SAP.gap.json
@@ -0,0 +1 @@
+{"family": "SAP", "n_seqs": 1867, "length": 35, "gap_rates": [0.6132833422603107, 0.2994108194965185, 0.19228709159078736, 0.08409212640599893, 0.04874129619710766, 0.02945902517407606, 0.0144617032672737, 0.010176754151044456, 0.002678093197643278, 0.0010712372790573112, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0005356186395286556, 0.0, 0.0, 0.0, 0.0005356186395286556, 0.0016068559185859668, 0.0021424745581146223, 0.002678093197643278, 0.0048205677557579, 0.009105516871987145, 0.016068559185859668, 0.056775575790037495, 0.1569362613818961, 0.2978039635779325, 0.660953401178361], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/SBBP.gap.json b/pfam_gap_rates/SBBP.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..0dad4e4289dbd79a973a4f562fac04ca2e99c82a
--- /dev/null
+++ b/pfam_gap_rates/SBBP.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/SBP56.gap.json b/pfam_gap_rates/SBP56.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d768270ac766059f5c256bd9ab6114790b52cfef
--- /dev/null
+++ b/pfam_gap_rates/SBP56.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/SCA7.gap.json b/pfam_gap_rates/SCA7.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..270e4a96d2cb909fac0aeacab32d8bfece873d9c
--- /dev/null
+++ b/pfam_gap_rates/SCA7.gap.json
@@ -0,0 +1 @@
+{"family": "SCA7", "n_seqs": 286, "length": 68, "gap_rates": [0.9195804195804196, 0.6503496503496503, 0.541958041958042, 0.46503496503496505, 0.4020979020979021, 0.3741258741258741, 0.2972027972027972, 0.2762237762237762, 0.24475524475524477, 0.21678321678321677, 0.19230769230769232, 0.17482517482517482, 0.15034965034965034, 0.14335664335664336, 0.13636363636363635, 0.12937062937062938, 0.12237762237762238, 0.0944055944055944, 0.03146853146853147, 0.027972027972027972, 0.027972027972027972, 0.027972027972027972, 0.027972027972027972, 0.055944055944055944, 0.038461538461538464, 0.027972027972027972, 0.5454545454545454, 0.024475524475524476, 0.024475524475524476, 0.024475524475524476, 0.02097902097902098, 0.02097902097902098, 0.02097902097902098, 0.02097902097902098, 0.02097902097902098, 0.02097902097902098, 0.02097902097902098, 0.02097902097902098, 0.01048951048951049, 0.006993006993006993, 0.017482517482517484, 0.017482517482517484, 0.01048951048951049, 0.01048951048951049, 0.01048951048951049, 0.013986013986013986, 0.013986013986013986, 0.013986013986013986, 0.02097902097902098, 0.10139860139860139, 0.13636363636363635, 0.12937062937062938, 0.13286713286713286, 0.13636363636363635, 0.13636363636363635, 0.13636363636363635, 0.13636363636363635, 0.13636363636363635, 0.13636363636363635, 0.13636363636363635, 0.14685314685314685, 0.14685314685314685, 0.14685314685314685, 0.16783216783216784, 0.19230769230769232, 0.20279720279720279, 0.24125874125874125, 0.36713286713286714], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/SCAPER_N.gap.json b/pfam_gap_rates/SCAPER_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..9e241dc49a73130f78cb5a675a9887288d1d2475
--- /dev/null
+++ b/pfam_gap_rates/SCAPER_N.gap.json
@@ -0,0 +1 @@
+{"family": "SCAPER_N", "n_seqs": 103, "length": 113, "gap_rates": [0.7572815533980582, 0.5242718446601942, 0.32038834951456313, 0.1941747572815534, 0.1650485436893204, 0.1262135922330097, 0.0970873786407767, 0.06796116504854369, 0.05825242718446602, 0.02912621359223301, 0.02912621359223301, 0.02912621359223301, 0.02912621359223301, 0.02912621359223301, 0.02912621359223301, 0.02912621359223301, 0.02912621359223301, 0.02912621359223301, 0.02912621359223301, 0.02912621359223301, 0.02912621359223301, 0.02912621359223301, 0.02912621359223301, 0.02912621359223301, 0.019417475728155338, 0.019417475728155338, 0.019417475728155338, 0.019417475728155338, 0.019417475728155338, 0.019417475728155338, 0.019417475728155338, 0.019417475728155338, 0.019417475728155338, 0.019417475728155338, 0.02912621359223301, 0.019417475728155338, 0.019417475728155338, 0.019417475728155338, 0.019417475728155338, 0.019417475728155338, 0.019417475728155338, 0.019417475728155338, 0.019417475728155338, 0.02912621359223301, 0.02912621359223301, 0.019417475728155338, 0.019417475728155338, 0.019417475728155338, 0.009708737864077669, 0.009708737864077669, 0.009708737864077669, 0.009708737864077669, 0.009708737864077669, 0.009708737864077669, 0.009708737864077669, 0.009708737864077669, 0.009708737864077669, 0.009708737864077669, 0.009708737864077669, 0.009708737864077669, 0.009708737864077669, 0.009708737864077669, 0.941747572815534, 0.941747572815534, 0.941747572815534, 0.941747572815534, 0.009708737864077669, 0.02912621359223301, 0.02912621359223301, 0.038834951456310676, 0.02912621359223301, 0.7669902912621359, 0.7766990291262136, 0.7766990291262136, 0.7766990291262136, 0.8349514563106796, 0.8543689320388349, 0.8543689320388349, 0.8543689320388349, 0.8058252427184466, 0.7766990291262136, 0.7766990291262136, 0.7766990291262136, 0.7669902912621359, 0.038834951456310676, 0.04854368932038835, 0.06796116504854369, 0.06796116504854369, 0.07766990291262135, 0.1941747572815534, 0.20388349514563106, 0.17475728155339806, 0.08737864077669903, 0.11650485436893204, 0.11650485436893204, 0.10679611650485436, 0.10679611650485436, 0.10679611650485436, 0.10679611650485436, 0.11650485436893204, 0.11650485436893204, 0.11650485436893204, 0.1262135922330097, 0.941747572815534, 0.13592233009708737, 0.13592233009708737, 0.14563106796116504, 0.1650485436893204, 0.1941747572815534, 0.27184466019417475, 0.42718446601941745, 0.7184466019417476, 0.8252427184466019], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/SGS.gap.json b/pfam_gap_rates/SGS.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b806ecd8f3d65339b5159c6c869cf715afcea195
--- /dev/null
+++ b/pfam_gap_rates/SGS.gap.json
@@ -0,0 +1 @@
+{"family": "SGS", "n_seqs": 384, "length": 96, "gap_rates": [0.4140625, 0.17447916666666666, 0.1171875, 0.11458333333333333, 0.11458333333333333, 0.11197916666666667, 0.11197916666666667, 0.10677083333333333, 0.1015625, 0.10677083333333333, 0.10677083333333333, 0.2760416666666667, 0.2864583333333333, 0.3020833333333333, 0.3177083333333333, 0.2916666666666667, 0.3098958333333333, 0.3020833333333333, 0.2890625, 0.2421875, 0.7552083333333334, 0.7682291666666666, 0.8958333333333334, 0.921875, 0.9348958333333334, 0.9453125, 0.9296875, 0.9088541666666666, 0.8697916666666666, 0.7552083333333334, 0.75, 0.453125, 0.3723958333333333, 0.028645833333333332, 0.028645833333333332, 0.028645833333333332, 0.026041666666666668, 0.026041666666666668, 0.026041666666666668, 0.026041666666666668, 0.026041666666666668, 0.026041666666666668, 0.0234375, 0.0234375, 0.0234375, 0.0234375, 0.0234375, 0.026041666666666668, 0.026041666666666668, 0.018229166666666668, 0.018229166666666668, 0.018229166666666668, 0.015625, 0.015625, 0.015625, 0.018229166666666668, 0.018229166666666668, 0.018229166666666668, 0.018229166666666668, 0.0234375, 0.0234375, 0.0234375, 0.033854166666666664, 0.0390625, 0.052083333333333336, 0.125, 0.125, 0.13020833333333334, 0.12760416666666666, 0.12760416666666666, 0.12760416666666666, 0.12760416666666666, 0.13020833333333334, 0.13802083333333334, 0.13802083333333334, 0.140625, 0.140625, 0.140625, 0.14322916666666666, 0.14583333333333334, 0.16145833333333334, 0.16145833333333334, 0.9244791666666666, 0.9244791666666666, 0.17708333333333334, 0.2109375, 0.21875, 0.22916666666666666, 0.23697916666666666, 0.265625, 0.2708333333333333, 0.2734375, 0.2734375, 0.2786458333333333, 0.2890625, 0.3333333333333333], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/SH3_1.gap.json b/pfam_gap_rates/SH3_1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..767185999152ca3f45fb7322b75b8d613f4ce56a
--- /dev/null
+++ b/pfam_gap_rates/SH3_1.gap.json
@@ -0,0 +1 @@
+{"family": "SH3_1", "n_seqs": 5000, "length": 53, "gap_rates": [0.3222, 0.1552, 0.0952, 0.0746, 0.0572, 0.043, 0.0396, 0.0308, 0.027, 0.0232, 0.9292, 0.0158, 0.0122, 0.0102, 0.0048, 0.0034, 0.0024, 0.0014, 0.0008, 0.0006, 0.0004, 0.0002, 0.0002, 0.0004, 0.0014, 0.0014, 0.0022, 0.0302, 0.005, 0.0056, 0.0082, 0.8682, 0.7452, 0.0934, 0.0098, 0.01, 0.0108, 0.0124, 0.017, 0.0196, 0.0252, 0.2706, 0.6096, 0.942, 0.8882, 0.2548, 0.0664, 0.0642, 0.0656, 0.0694, 0.074, 0.092, 0.3352], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/SH3_3.gap.json b/pfam_gap_rates/SH3_3.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..0ab1c96e38891ef171ea263c837ed4421fdc1c66
--- /dev/null
+++ b/pfam_gap_rates/SH3_3.gap.json
@@ -0,0 +1 @@
+{"family": "SH3_3", "n_seqs": 3873, "length": 64, "gap_rates": [0.8246837077201136, 0.35450555125225924, 0.1332300542215337, 0.06480764265427318, 0.029176349083397883, 0.018590240123934933, 0.013426284533953009, 0.009036922282468371, 0.007487735605473793, 0.009811515620965659, 0.007229537825974697, 0.0059385489284792155, 0.014975471210947586, 0.012651691195455719, 0.0012909888974954814, 0.000774593338497289, 0.0005163955589981926, 0.0, 0.0, 0.0, 0.0010327911179963851, 0.0, 0.0, 0.0005163955589981926, 0.0, 0.0, 0.0, 0.0005163955589981926, 0.0028401755744900596, 0.0020655822359927703, 0.002581977794990963, 0.0023237800154918666, 0.003356571133488252, 0.5923057061709269, 0.7340562871159309, 0.8497288923315259, 0.9251226439452621, 0.9421636973922024, 0.935708752904725, 0.8843273947844048, 0.8383681900335657, 0.0002581977794990963, 0.000774593338497289, 0.000774593338497289, 0.0010327911179963851, 0.9395817195972115, 0.9153111283242964, 0.5058094500387297, 0.08107410276271625, 0.032532920216886134, 0.025819777949909632, 0.013426284533953009, 0.016524657887942162, 0.8987864704363543, 0.08313968499870901, 0.012651691195455719, 0.011877097856958431, 0.013426284533953009, 0.030209140201394268, 0.051897753679318356, 0.09243480506067647, 0.14820552543248128, 0.24838626387813065, 0.726826749289956], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/SHQ1.gap.json b/pfam_gap_rates/SHQ1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..4cc7020d142566024d62abc4762d6703a7fa17e9
--- /dev/null
+++ b/pfam_gap_rates/SHQ1.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/SHR-BD.gap.json b/pfam_gap_rates/SHR-BD.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..9a71638be08300b34594eb0206ac8bb31a5cce83
--- /dev/null
+++ b/pfam_gap_rates/SHR-BD.gap.json
@@ -0,0 +1 @@
+{"family": "SHR-BD", "n_seqs": 678, "length": 375, "gap_rates": [0.7890855457227138, 0.5619469026548672, 0.40707964601769914, 0.3702064896755162, 0.36578171091445427, 0.35988200589970504, 0.35988200589970504, 0.35398230088495575, 0.3525073746312684, 0.3525073746312684, 0.3525073746312684, 0.35103244837758113, 0.35103244837758113, 0.3495575221238938, 0.35103244837758113, 0.35103244837758113, 0.3495575221238938, 0.3495575221238938, 0.3480825958702065, 0.3466076696165192, 0.34513274336283184, 0.34513274336283184, 0.34513274336283184, 0.3466076696165192, 0.3466076696165192, 0.3466076696165192, 0.4365781710914454, 0.41150442477876104, 0.3775811209439528, 0.34365781710914456, 0.3421828908554572, 0.3392330383480826, 0.3392330383480826, 0.35398230088495575, 0.35988200589970504, 0.5457227138643068, 0.5309734513274337, 0.7197640117994101, 0.7492625368731564, 0.8067846607669616, 0.883480825958702, 0.8997050147492626, 0.9026548672566371, 0.9070796460176991, 0.9203539823008849, 0.9277286135693216, 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\ No newline at end of file
diff --git a/pfam_gap_rates/SIP.gap.json b/pfam_gap_rates/SIP.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..dab0ff32e7e3fc0aca3799227ddac80ac00c5395
--- /dev/null
+++ b/pfam_gap_rates/SIP.gap.json
@@ -0,0 +1 @@
+{"family": "SIP", "n_seqs": 767, "length": 170, "gap_rates": [0.6088657105606258, 0.25554106910039115, 0.11994784876140809, 0.035202086049543675, 0.024771838331160364, 0.01955671447196871, 0.018252933507170794, 0.018252933507170794, 0.01694915254237288, 0.01694915254237288, 0.01694915254237288, 0.014341590612777053, 0.01303780964797914, 0.01303780964797914, 0.014341590612777053, 0.01303780964797914, 0.01303780964797914, 0.01303780964797914, 0.01303780964797914, 0.01303780964797914, 0.014341590612777053, 0.01303780964797914, 0.011734028683181226, 0.9374185136897001, 0.9413298565840938, 0.9295958279009127, 0.05867014341590613, 0.027379400260756193, 0.01303780964797914, 0.01303780964797914, 0.01303780964797914, 0.010430247718383311, 0.01303780964797914, 0.011734028683181226, 0.011734028683181226, 0.014341590612777053, 0.010430247718383311, 0.014341590612777053, 0.01303780964797914, 0.014341590612777053, 0.01694915254237288, 0.01564537157757497, 0.014341590612777053, 0.940026075619296, 0.02216427640156454, 0.020860495436766623, 0.03259452411994785, 0.020860495436766623, 0.07040417209908735, 0.06910039113428944, 0.9387222946544981, 0.03389830508474576, 0.024771838331160364, 0.01694915254237288, 0.01564537157757497, 0.009126466753585397, 0.010430247718383311, 0.009126466753585397, 0.007822685788787484, 0.007822685788787484, 0.014341590612777053, 0.020860495436766623, 0.03259452411994785, 0.03780964797913951, 0.035202086049543675, 0.878748370273794, 0.9269882659713168, 0.940026075619296, 0.9426336375488917, 0.940026075619296, 0.9348109517601043, 0.9022164276401564, 0.6453715775749674, 0.48891786179921776, 0.25945241199478486, 0.1981747066492829, 0.1395045632333768, 0.06779661016949153, 0.03780964797913951, 0.014341590612777053, 0.011734028683181226, 0.011734028683181226, 0.011734028683181226, 0.010430247718383311, 0.011734028683181226, 0.01303780964797914, 0.01303780964797914, 0.01564537157757497, 0.020860495436766623, 0.8657105606258149, 0.8748370273794003, 0.8761408083441982, 0.877444589308996, 0.878748370273794, 0.878748370273794, 0.8800521512385919, 0.8813559322033898, 0.8813559322033898, 0.8813559322033898, 0.8826597131681877, 0.8865710560625815, 0.8878748370273793, 0.8996088657105606, 0.9087353324641461, 0.9178617992177314, 0.9256844850065189, 0.9465449804432855, 0.9426336375488917, 0.9217731421121251, 0.9152542372881356, 0.9022164276401564, 0.8970013037809648, 0.8878748370273793, 0.8839634941329857, 0.8813559322033898, 0.8813559322033898, 0.8813559322033898, 0.8813559322033898, 0.878748370273794, 0.878748370273794, 0.878748370273794, 0.877444589308996, 0.8761408083441982, 0.8709256844850065, 0.8604954367666232, 0.1303780964797914, 0.05736636245110821, 0.02346805736636245, 0.9361147327249022, 0.8761408083441982, 0.01694915254237288, 0.01564537157757497, 0.01694915254237288, 0.01694915254237288, 0.01694915254237288, 0.01694915254237288, 0.018252933507170794, 0.02216427640156454, 0.02216427640156454, 0.02346805736636245, 0.02346805736636245, 0.02346805736636245, 0.02346805736636245, 0.02216427640156454, 0.02346805736636245, 0.02346805736636245, 0.024771838331160364, 0.024771838331160364, 0.024771838331160364, 0.024771838331160364, 0.0651890482398957, 0.09517601043024772, 0.041720990873533245, 0.05736636245110821, 0.03129074315514994, 0.028683181225554105, 0.028683181225554105, 0.03129074315514994, 0.03129074315514994, 0.02998696219035202, 0.028683181225554105, 0.03129074315514994, 0.03259452411994785, 0.03259452411994785, 0.03259452411994785, 0.03389830508474576, 0.035202086049543675, 0.03911342894393742, 0.1303780964797914, 0.379400260756193], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/SIR2.gap.json b/pfam_gap_rates/SIR2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..be34ec127517c4d868391b3f225fadd3b3700bbc
--- /dev/null
+++ b/pfam_gap_rates/SIR2.gap.json
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\ No newline at end of file
diff --git a/pfam_gap_rates/SKN1.gap.json b/pfam_gap_rates/SKN1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..dba50b58d0d1f6848dfde9b94dfa5796f5bc1b5c
--- /dev/null
+++ b/pfam_gap_rates/SKN1.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/SK_channel.gap.json b/pfam_gap_rates/SK_channel.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..fd632df39b89ebdb4de36485b273d46157275446
--- /dev/null
+++ b/pfam_gap_rates/SK_channel.gap.json
@@ -0,0 +1 @@
+{"family": "SK_channel", "n_seqs": 216, "length": 129, "gap_rates": [0.42592592592592593, 0.38425925925925924, 0.37962962962962965, 0.33796296296296297, 0.3333333333333333, 0.3287037037037037, 0.3194444444444444, 0.3148148148148148, 0.2962962962962963, 0.2916666666666667, 0.2777777777777778, 0.26851851851851855, 0.2638888888888889, 0.25925925925925924, 0.24074074074074073, 0.24074074074074073, 0.24074074074074073, 0.23148148148148148, 0.22685185185185186, 0.22685185185185186, 0.2222222222222222, 0.21296296296296297, 0.21296296296296297, 0.20833333333333334, 0.20833333333333334, 0.20833333333333334, 0.2037037037037037, 0.2037037037037037, 0.2037037037037037, 0.19444444444444445, 0.19907407407407407, 0.19907407407407407, 0.19907407407407407, 0.19907407407407407, 0.19444444444444445, 0.19444444444444445, 0.19444444444444445, 0.18981481481481483, 0.4074074074074074, 0.19444444444444445, 0.2037037037037037, 0.21296296296296297, 0.2175925925925926, 0.20833333333333334, 0.26851851851851855, 0.8611111111111112, 0.9259259259259259, 0.9259259259259259, 0.9305555555555556, 0.9398148148148148, 0.9444444444444444, 0.9490740740740741, 0.9490740740740741, 0.9490740740740741, 0.9444444444444444, 0.9398148148148148, 0.9305555555555556, 0.9259259259259259, 0.8842592592592593, 0.8472222222222222, 0.18518518518518517, 0.18055555555555555, 0.18055555555555555, 0.18518518518518517, 0.19444444444444445, 0.19907407407407407, 0.19444444444444445, 0.19444444444444445, 0.19907407407407407, 0.19907407407407407, 0.19907407407407407, 0.2037037037037037, 0.2037037037037037, 0.2037037037037037, 0.19907407407407407, 0.19907407407407407, 0.19907407407407407, 0.19907407407407407, 0.19907407407407407, 0.19907407407407407, 0.19444444444444445, 0.19444444444444445, 0.19444444444444445, 0.19444444444444445, 0.19444444444444445, 0.18518518518518517, 0.18055555555555555, 0.18055555555555555, 0.17592592592592593, 0.1712962962962963, 0.125, 0.12962962962962962, 0.125, 0.125, 0.125, 0.12962962962962962, 0.12962962962962962, 0.12962962962962962, 0.12962962962962962, 0.1388888888888889, 0.1388888888888889, 0.1388888888888889, 0.1388888888888889, 0.14351851851851852, 0.1388888888888889, 0.1388888888888889, 0.1388888888888889, 0.1388888888888889, 0.14351851851851852, 0.1388888888888889, 0.1388888888888889, 0.1388888888888889, 0.1388888888888889, 0.1388888888888889, 0.1388888888888889, 0.1388888888888889, 0.1388888888888889, 0.1388888888888889, 0.1388888888888889, 0.1388888888888889, 0.14351851851851852, 0.14814814814814814, 0.14814814814814814, 0.14814814814814814, 0.14814814814814814, 0.14814814814814814, 0.16666666666666666, 0.18518518518518517, 0.37037037037037035], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/SLH.gap.json b/pfam_gap_rates/SLH.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ee4ae26a468c289449af3c500c68be240c4acef1
--- /dev/null
+++ b/pfam_gap_rates/SLH.gap.json
@@ -0,0 +1 @@
+{"family": "SLH", "n_seqs": 5000, "length": 49, "gap_rates": [0.5752, 0.2026, 0.127, 0.0932, 0.0892, 0.0846, 0.0794, 0.0728, 0.2474, 0.5394, 0.8836, 0.1068, 0.1658, 0.2644, 0.0374, 0.031, 0.0282, 0.025, 0.0224, 0.0216, 0.0202, 0.0184, 0.0178, 0.0142, 0.9468, 0.0112, 0.006, 0.005, 0.0038, 0.0028, 0.0038, 0.0386, 0.0166, 0.0672, 0.947, 0.9286, 0.0034, 0.0038, 0.0044, 0.0052, 0.0058, 0.0072, 0.0082, 0.0138, 0.0264, 0.0396, 0.0738, 0.1278, 0.4222], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/SLIDE.gap.json b/pfam_gap_rates/SLIDE.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f29b10bdd91651750da93b43fc7c25dbef97db7f
--- /dev/null
+++ b/pfam_gap_rates/SLIDE.gap.json
@@ -0,0 +1 @@
+{"family": "SLIDE", "n_seqs": 425, "length": 118, "gap_rates": [0.3129411764705882, 0.08235294117647059, 0.07294117647058823, 0.07058823529411765, 0.0611764705882353, 0.0611764705882353, 0.0611764705882353, 0.05411764705882353, 0.05176470588235294, 0.04941176470588235, 0.04941176470588235, 0.04941176470588235, 0.04470588235294118, 0.04470588235294118, 0.04470588235294118, 0.042352941176470586, 0.042352941176470586, 0.03529411764705882, 0.03294117647058824, 0.02588235294117647, 0.02588235294117647, 0.023529411764705882, 0.021176470588235293, 0.018823529411764704, 0.018823529411764704, 0.018823529411764704, 0.018823529411764704, 0.018823529411764704, 0.018823529411764704, 0.018823529411764704, 0.02823529411764706, 0.021176470588235293, 0.023529411764705882, 0.023529411764705882, 0.023529411764705882, 0.02588235294117647, 0.023529411764705882, 0.023529411764705882, 0.021176470588235293, 0.03058823529411765, 0.03294117647058824, 0.03529411764705882, 0.5905882352941176, 0.9458823529411765, 0.047058823529411764, 0.04, 0.03294117647058824, 0.02588235294117647, 0.023529411764705882, 0.018823529411764704, 0.03058823529411765, 0.691764705882353, 0.03529411764705882, 0.023529411764705882, 0.021176470588235293, 0.01647058823529412, 0.01647058823529412, 0.01647058823529412, 0.01411764705882353, 0.011764705882352941, 0.011764705882352941, 0.01411764705882353, 0.01411764705882353, 0.01411764705882353, 0.01647058823529412, 0.018823529411764704, 0.018823529411764704, 0.01647058823529412, 0.01647058823529412, 0.01411764705882353, 0.01647058823529412, 0.02823529411764706, 0.37411764705882355, 0.3811764705882353, 0.3623529411764706, 0.03058823529411765, 0.021176470588235293, 0.021176470588235293, 0.021176470588235293, 0.021176470588235293, 0.023529411764705882, 0.042352941176470586, 0.04941176470588235, 0.05176470588235294, 0.05176470588235294, 0.04941176470588235, 0.047058823529411764, 0.047058823529411764, 0.047058823529411764, 0.047058823529411764, 0.047058823529411764, 0.05411764705882353, 0.05411764705882353, 0.05176470588235294, 0.05176470588235294, 0.05176470588235294, 0.05176470588235294, 0.05176470588235294, 0.05176470588235294, 0.05176470588235294, 0.058823529411764705, 0.06352941176470588, 0.06352941176470588, 0.06352941176470588, 0.06588235294117648, 0.06823529411764706, 0.06823529411764706, 0.07058823529411765, 0.07058823529411765, 0.07058823529411765, 0.07058823529411765, 0.07058823529411765, 0.07294117647058823, 0.07764705882352942, 0.08, 0.08470588235294117, 0.1011764705882353, 0.72], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/SOXp.gap.json b/pfam_gap_rates/SOXp.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..41a6857605fa916d8f39effd02eff808e2246671
--- /dev/null
+++ b/pfam_gap_rates/SOXp.gap.json
@@ -0,0 +1 @@
+{"family": "SOXp", "n_seqs": 114, "length": 182, "gap_rates": [0.017543859649122806, 0.017543859649122806, 0.017543859649122806, 0.017543859649122806, 0.017543859649122806, 0.017543859649122806, 0.017543859649122806, 0.017543859649122806, 0.017543859649122806, 0.017543859649122806, 0.017543859649122806, 0.017543859649122806, 0.9298245614035088, 0.017543859649122806, 0.017543859649122806, 0.017543859649122806, 0.017543859649122806, 0.017543859649122806, 0.02631578947368421, 0.02631578947368421, 0.02631578947368421, 0.07894736842105263, 0.09649122807017543, 0.09649122807017543, 0.10526315789473684, 0.09649122807017543, 0.8421052631578947, 0.8771929824561403, 0.9210526315789473, 0.9210526315789473, 0.9385964912280702, 0.9385964912280702, 0.9385964912280702, 0.9385964912280702, 0.9385964912280702, 0.9385964912280702, 0.9385964912280702, 0.9385964912280702, 0.9385964912280702, 0.9210526315789473, 0.8947368421052632, 0.8596491228070176, 0.8245614035087719, 0.10526315789473684, 0.17543859649122806, 0.20175438596491227, 0.19298245614035087, 0.24561403508771928, 0.24561403508771928, 0.30701754385964913, 0.30701754385964913, 0.2982456140350877, 0.39473684210526316, 0.35964912280701755, 0.39473684210526316, 0.37719298245614036, 0.41228070175438597, 0.7631578947368421, 0.868421052631579, 0.6754385964912281, 0.3333333333333333, 0.3684210526315789, 0.23684210526315788, 0.7368421052631579, 0.7456140350877193, 0.7807017543859649, 0.8070175438596491, 0.8245614035087719, 0.8245614035087719, 0.8245614035087719, 0.8245614035087719, 0.8508771929824561, 0.8596491228070176, 0.9210526315789473, 0.9298245614035088, 0.9298245614035088, 0.9473684210526315, 0.9473684210526315, 0.9298245614035088, 0.9298245614035088, 0.9298245614035088, 0.9122807017543859, 0.8596491228070176, 0.8421052631578947, 0.8245614035087719, 0.8245614035087719, 0.8245614035087719, 0.8157894736842105, 0.7894736842105263, 0.7807017543859649, 0.7456140350877193, 0.7368421052631579, 0.24561403508771928, 0.30701754385964913, 0.2719298245614035, 0.19298245614035087, 0.7456140350877193, 0.7543859649122807, 0.7631578947368421, 0.7631578947368421, 0.8070175438596491, 0.9210526315789473, 0.9210526315789473, 0.9210526315789473, 0.9298245614035088, 0.9298245614035088, 0.9298245614035088, 0.9298245614035088, 0.9298245614035088, 0.9298245614035088, 0.9298245614035088, 0.9210526315789473, 0.9210526315789473, 0.9210526315789473, 0.8070175438596491, 0.7982456140350878, 0.7631578947368421, 0.7631578947368421, 0.7543859649122807, 0.7456140350877193, 0.18421052631578946, 0.17543859649122806, 0.21052631578947367, 0.19298245614035087, 0.19298245614035087, 0.19298245614035087, 0.17543859649122806, 0.17543859649122806, 0.17543859649122806, 0.9122807017543859, 0.21052631578947367, 0.20175438596491227, 0.20175438596491227, 0.17543859649122806, 0.5877192982456141, 0.8508771929824561, 0.8859649122807017, 0.8947368421052632, 0.9122807017543859, 0.9210526315789473, 0.9122807017543859, 0.9122807017543859, 0.8859649122807017, 0.8771929824561403, 0.8333333333333334, 0.30701754385964913, 0.21052631578947367, 0.19298245614035087, 0.20175438596491227, 0.19298245614035087, 0.49122807017543857, 0.43859649122807015, 0.23684210526315788, 0.21052631578947367, 0.20175438596491227, 0.20175438596491227, 0.21052631578947367, 0.21052631578947367, 0.21929824561403508, 0.22807017543859648, 0.2543859649122807, 0.4298245614035088, 0.42105263157894735, 0.8245614035087719, 0.8508771929824561, 0.8947368421052632, 0.9122807017543859, 0.8859649122807017, 0.8421052631578947, 0.7807017543859649, 0.5526315789473685, 0.6052631578947368, 0.5964912280701754, 0.5175438596491229, 0.5175438596491229, 0.5175438596491229, 0.543859649122807, 0.5701754385964912, 0.5701754385964912, 0.6052631578947368, 0.631578947368421, 0.6491228070175439], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/SRP_TPR_like.gap.json b/pfam_gap_rates/SRP_TPR_like.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..70470a64f5f881467b728472c4cb57700278ce82
--- /dev/null
+++ b/pfam_gap_rates/SRP_TPR_like.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/ST7.gap.json b/pfam_gap_rates/ST7.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..5a3e54433e1d5ddaaa506896f186960c1d25ab8c
--- /dev/null
+++ b/pfam_gap_rates/ST7.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/STAT_alpha.gap.json b/pfam_gap_rates/STAT_alpha.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f0e2ad84fb7192100d9aa9c3bb49e88d614f6d1a
--- /dev/null
+++ b/pfam_gap_rates/STAT_alpha.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/STN.gap.json b/pfam_gap_rates/STN.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..061dd692d4d9b26731850dd42cf4adc37df16558
--- /dev/null
+++ b/pfam_gap_rates/STN.gap.json
@@ -0,0 +1 @@
+{"family": "STN", "n_seqs": 780, "length": 53, "gap_rates": [0.5833333333333334, 0.2833333333333333, 0.15256410256410258, 0.1076923076923077, 0.0782051282051282, 0.05897435897435897, 0.3628205128205128, 0.046153846153846156, 0.038461538461538464, 0.03461538461538462, 0.029487179487179487, 0.02435897435897436, 0.3576923076923077, 0.33974358974358976, 0.0, 0.0, 0.0, 0.0, 0.0038461538461538464, 0.24871794871794872, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.001282051282051282, 0.001282051282051282, 0.001282051282051282, 0.001282051282051282, 0.7666666666666667, 0.002564102564102564, 0.008974358974358974, 0.011538461538461539, 0.016666666666666666, 0.026923076923076925, 0.035897435897435895, 0.04358974358974359, 0.11794871794871795, 0.3153846153846154, 0.8025641025641026], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/SUN.gap.json b/pfam_gap_rates/SUN.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..72826dd68ce05fc63aaa1e7b60aa404e2fffbdac
--- /dev/null
+++ b/pfam_gap_rates/SUN.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Scm3.gap.json b/pfam_gap_rates/Scm3.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..3287e76331a30866969a670f3cf30398add9b24f
--- /dev/null
+++ b/pfam_gap_rates/Scm3.gap.json
@@ -0,0 +1 @@
+{"family": "Scm3", "n_seqs": 116, "length": 56, "gap_rates": [0.8103448275862069, 0.5172413793103449, 0.28448275862068967, 0.1206896551724138, 0.06896551724137931, 0.05172413793103448, 0.04310344827586207, 0.017241379310344827, 0.017241379310344827, 0.008620689655172414, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.7155172413793104, 0.034482758620689655, 0.034482758620689655, 0.04310344827586207, 0.034482758620689655, 0.27586206896551724, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.9482758620689655, 0.9396551724137931, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.008620689655172414, 0.02586206896551724, 0.02586206896551724, 0.04310344827586207, 0.09482758620689655, 0.22413793103448276, 0.7413793103448276], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Sec15.gap.json b/pfam_gap_rates/Sec15.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..9fda2c15913c4c3476456a26a7a017b0916d6b9f
--- /dev/null
+++ b/pfam_gap_rates/Sec15.gap.json
@@ -0,0 +1 @@
+{"family": "Sec15", "n_seqs": 372, "length": 343, "gap_rates": [0.4112903225806452, 0.3521505376344086, 0.32526881720430106, 0.29301075268817206, 0.28763440860215056, 0.2849462365591398, 0.28225806451612906, 0.28225806451612906, 0.27956989247311825, 0.271505376344086, 0.260752688172043, 0.2553763440860215, 0.260752688172043, 0.2849462365591398, 0.29838709677419356, 0.2956989247311828, 0.29301075268817206, 0.3118279569892473, 0.6344086021505376, 0.8709677419354839, 0.9139784946236559, 0.7849462365591398, 0.8279569892473119, 0.5913978494623656, 0.553763440860215, 0.17204301075268819, 0.1693548387096774, 0.1639784946236559, 0.1639784946236559, 0.1639784946236559, 0.1639784946236559, 0.1639784946236559, 0.16129032258064516, 0.1586021505376344, 0.15591397849462366, 0.15591397849462366, 0.15591397849462366, 0.15591397849462366, 0.15053763440860216, 0.15053763440860216, 0.15053763440860216, 0.14516129032258066, 0.1424731182795699, 0.1424731182795699, 0.13709677419354838, 0.13440860215053763, 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\ No newline at end of file
diff --git a/pfam_gap_rates/Sec34.gap.json b/pfam_gap_rates/Sec34.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..975f0edc3fd7fbb05036a667b51a7cb4ac32c4c0
--- /dev/null
+++ b/pfam_gap_rates/Sec34.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Sec3_C.gap.json b/pfam_gap_rates/Sec3_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..0e460bf60e1790c3bed90edbe3c45456745e5880
--- /dev/null
+++ b/pfam_gap_rates/Sec3_C.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Sec66.gap.json b/pfam_gap_rates/Sec66.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ae8af2f6c77d80c49a19eafb1b319b367c153bf2
--- /dev/null
+++ b/pfam_gap_rates/Sec66.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/SecY.gap.json b/pfam_gap_rates/SecY.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..02774f76dd96e51acd5593ec57987d1eaa0af0ab
--- /dev/null
+++ b/pfam_gap_rates/SecY.gap.json
@@ -0,0 +1 @@
+{"family": "SecY", "n_seqs": 3022, "length": 459, "gap_rates": [0.1598279285241562, 0.062210456651224356, 0.0585704831237591, 0.05559232296492389, 0.05526141628060887, 0.05493050959629384, 0.05493050959629384, 0.05493050959629384, 0.05493050959629384, 0.05493050959629384, 0.05493050959629384, 0.05526141628060887, 0.05526141628060887, 0.05526141628060887, 0.05493050959629384, 0.053606882859033755, 0.051952349437458634, 0.05129053606882859, 0.05129053606882859, 0.05129053606882859, 0.8120450033090668, 0.05261416280608868, 0.05261416280608868, 0.913633355393779, 0.2402382528127068, 0.23825281270681667, 0.2342819324950364, 0.13831899404367967, 0.13269358041032428, 0.05228325612177366, 0.05294506949040371, 0.05228325612177366, 0.053937789543348776, 0.9033752481800132, 0.06386499007279947, 0.05823957643944408, 0.8696227663798809, 0.07743216412971542, 0.05261416280608868, 0.051952349437458634, 0.05029781601588352, 0.0499669093315685, 0.0499669093315685, 0.048643282594308404, 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\ No newline at end of file
diff --git a/pfam_gap_rates/Sec_GG.gap.json b/pfam_gap_rates/Sec_GG.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..599a44c0a4727aea57cf22b759125372504b026d
--- /dev/null
+++ b/pfam_gap_rates/Sec_GG.gap.json
@@ -0,0 +1 @@
+{"family": "Sec_GG", "n_seqs": 2783, "length": 28, "gap_rates": [0.8343514193316565, 0.5616241466043838, 0.4380165289256198, 0.38196191160618037, 0.3341717570966583, 0.2651814588573482, 0.16636722960833633, 0.062163133309378366, 0.020481494789795184, 0.005749191519942508, 0.0035932446999640674, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.002874595759971254, 0.006827164929931728, 0.011857707509881422, 0.023715415019762844, 0.038447718289615525, 0.07869205892921308, 0.11893639956881064, 0.20733021918792668, 0.35177865612648224, 0.49119655048508803, 0.7326625943226733], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Sedlin_N.gap.json b/pfam_gap_rates/Sedlin_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..be88cfc1839abe0dd44ba3ab13d6076b2dd55836
--- /dev/null
+++ b/pfam_gap_rates/Sedlin_N.gap.json
@@ -0,0 +1 @@
+{"family": "Sedlin_N", "n_seqs": 628, "length": 191, "gap_rates": [0.3614649681528662, 0.28821656050955413, 0.28343949044585987, 0.2659235668789809, 0.2531847133757962, 0.2372611464968153, 0.23089171974522293, 0.22611464968152867, 0.22452229299363058, 0.2213375796178344, 0.2213375796178344, 0.23248407643312102, 0.23885350318471338, 0.2372611464968153, 0.2229299363057325, 0.21656050955414013, 0.2197452229299363, 0.21815286624203822, 0.2484076433121019, 0.2643312101910828, 0.3630573248407643, 0.5509554140127388, 0.5429936305732485, 0.4856687898089172, 0.7117834394904459, 0.7993630573248408, 0.821656050955414, 0.9267515923566879, 0.9203821656050956, 0.8105095541401274, 0.7420382165605095, 0.643312101910828, 0.4124203821656051, 0.31687898089171973, 0.23885350318471338, 0.12420382165605096, 0.6257961783439491, 0.09554140127388536, 0.08280254777070063, 0.08280254777070063, 0.0732484076433121, 0.07165605095541401, 0.07165605095541401, 0.07165605095541401, 0.07165605095541401, 0.07165605095541401, 0.07165605095541401, 0.07165605095541401, 0.07165605095541401, 0.07165605095541401, 0.07165605095541401, 0.08121019108280254, 0.08280254777070063, 0.08280254777070063, 0.08121019108280254, 0.6369426751592356, 0.7054140127388535, 0.7340764331210191, 0.8726114649681529, 0.9219745222929936, 0.9315286624203821, 0.9028662420382165, 0.7579617834394905, 0.7229299363057324, 0.6464968152866242, 0.6114649681528662, 0.07802547770700637, 0.07961783439490445, 0.07643312101910828, 0.0732484076433121, 0.07165605095541401, 0.07006369426751592, 0.0589171974522293, 0.06210191082802548, 0.06847133757961783, 0.06847133757961783, 0.07961783439490445, 0.07484076433121019, 0.9203821656050956, 0.8407643312101911, 0.0589171974522293, 0.0589171974522293, 0.05573248407643312, 0.05732484076433121, 0.05573248407643312, 0.050955414012738856, 0.05732484076433121, 0.05573248407643312, 0.05573248407643312, 0.05573248407643312, 0.054140127388535034, 0.04936305732484077, 0.054140127388535034, 0.052547770700636945, 0.06050955414012739, 0.05732484076433121, 0.0589171974522293, 0.05732484076433121, 0.0589171974522293, 0.0589171974522293, 0.0589171974522293, 0.5589171974522293, 0.7547770700636943, 0.7707006369426752, 0.7818471337579618, 0.7866242038216561, 0.7929936305732485, 0.8152866242038217, 0.8343949044585988, 0.8535031847133758, 0.8694267515923567, 0.9171974522292994, 0.9267515923566879, 0.9315286624203821, 0.9410828025477707, 0.9490445859872612, 0.945859872611465, 0.9394904458598726, 0.9267515923566879, 0.9203821656050956, 0.9044585987261147, 0.8646496815286624, 0.8423566878980892, 0.8184713375796179, 0.8089171974522293, 0.7914012738853503, 0.785031847133758, 0.7770700636942676, 0.7579617834394905, 0.7452229299363057, 0.5207006369426752, 0.43471337579617836, 0.40605095541401276, 0.08598726114649681, 0.07802547770700637, 0.07484076433121019, 0.0732484076433121, 0.07165605095541401, 0.07165605095541401, 0.07165605095541401, 0.07165605095541401, 0.0732484076433121, 0.07961783439490445, 0.08280254777070063, 0.08439490445859872, 0.08439490445859872, 0.08121019108280254, 0.08439490445859872, 0.08439490445859872, 0.08439490445859872, 0.08598726114649681, 0.08598726114649681, 0.0875796178343949, 0.09076433121019108, 0.09235668789808917, 0.09554140127388536, 0.09713375796178345, 0.09872611464968153, 0.10031847133757962, 0.10191082802547771, 0.893312101910828, 0.9060509554140127, 0.9156050955414012, 0.9235668789808917, 0.9299363057324841, 0.928343949044586, 0.9187898089171974, 0.9124203821656051, 0.9012738853503185, 0.89171974522293, 0.10668789808917198, 0.13694267515923567, 0.13853503184713375, 0.13853503184713375, 0.13694267515923567, 0.15286624203821655, 0.1592356687898089, 0.17197452229299362, 0.18949044585987262, 0.20222929936305734, 0.21019108280254778, 0.21178343949044587, 0.2197452229299363, 0.22770700636942676, 0.23248407643312102, 0.23885350318471338, 0.25, 0.2643312101910828, 0.3359872611464968, 0.482484076433121, 0.6210191082802548], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/SelB-wing_2.gap.json b/pfam_gap_rates/SelB-wing_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b2ea09f8fa7bf21119ec4bd6c8bd3e63e2cb0a08
--- /dev/null
+++ b/pfam_gap_rates/SelB-wing_2.gap.json
@@ -0,0 +1 @@
+{"family": "SelB-wing_2", "n_seqs": 293, "length": 57, "gap_rates": [0.8054607508532423, 0.3856655290102389, 0.15017064846416384, 0.05460750853242321, 0.023890784982935155, 0.006825938566552901, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.12627986348122866, 0.15358361774744028, 0.023890784982935155, 0.017064846416382253, 0.013651877133105802, 0.013651877133105802, 0.006825938566552901, 0.006825938566552901, 0.006825938566552901, 0.006825938566552901, 0.006825938566552901, 0.006825938566552901, 0.010238907849829351, 0.020477815699658702, 0.027303754266211604, 0.030716723549488054, 0.040955631399317405, 0.03754266211604096, 0.04778156996587031, 0.04778156996587031, 0.051194539249146756, 0.06143344709897611, 0.06484641638225255, 0.06484641638225255, 0.08873720136518772, 0.09215017064846416, 0.11604095563139932, 0.13310580204778158, 0.16382252559726962, 0.30716723549488056, 0.41638225255972694], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Self-incomp_S1.gap.json b/pfam_gap_rates/Self-incomp_S1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c0ace0ad5308d541571d0e22ae9740ddffffa9e1
--- /dev/null
+++ b/pfam_gap_rates/Self-incomp_S1.gap.json
@@ -0,0 +1 @@
+{"family": "Self-incomp_S1", "n_seqs": 450, "length": 123, "gap_rates": [0.5688888888888889, 0.19777777777777777, 0.1511111111111111, 0.1288888888888889, 0.12222222222222222, 0.11555555555555555, 0.11555555555555555, 0.12666666666666668, 0.9222222222222223, 0.8177777777777778, 0.24666666666666667, 0.16, 0.09555555555555556, 0.8, 0.08222222222222222, 0.07111111111111111, 0.06222222222222222, 0.05555555555555555, 0.051111111111111114, 0.04888888888888889, 0.04888888888888889, 0.044444444444444446, 0.044444444444444446, 0.04666666666666667, 0.042222222222222223, 0.04, 0.044444444444444446, 0.05555555555555555, 0.051111111111111114, 0.042222222222222223, 0.04, 0.035555555555555556, 0.03333333333333333, 0.04666666666666667, 0.051111111111111114, 0.035555555555555556, 0.028888888888888888, 0.028888888888888888, 0.028888888888888888, 0.03111111111111111, 0.03111111111111111, 0.03333333333333333, 0.035555555555555556, 0.035555555555555556, 0.03333333333333333, 0.03777777777777778, 0.07777777777777778, 0.9422222222222222, 0.9155555555555556, 0.13777777777777778, 0.8711111111111111, 0.09111111111111111, 0.06, 0.04888888888888889, 0.03777777777777778, 0.03111111111111111, 0.03111111111111111, 0.03333333333333333, 0.035555555555555556, 0.03111111111111111, 0.03333333333333333, 0.03111111111111111, 0.03333333333333333, 0.03111111111111111, 0.8688888888888889, 0.9111111111111111, 0.8533333333333334, 0.044444444444444446, 0.044444444444444446, 0.044444444444444446, 0.8466666666666667, 0.042222222222222223, 0.03777777777777778, 0.03777777777777778, 0.03777777777777778, 0.04, 0.044444444444444446, 0.04888888888888889, 0.051111111111111114, 0.1711111111111111, 0.8533333333333334, 0.2311111111111111, 0.17333333333333334, 0.1, 0.07333333333333333, 0.07555555555555556, 0.08222222222222222, 0.12222222222222222, 0.28888888888888886, 0.7933333333333333, 0.9155555555555556, 0.9266666666666666, 0.8911111111111111, 0.6622222222222223, 0.08888888888888889, 0.08, 0.07777777777777778, 0.08222222222222222, 0.08222222222222222, 0.08444444444444445, 0.08888888888888889, 0.09333333333333334, 0.10222222222222223, 0.1111111111111111, 0.11333333333333333, 0.29333333333333333, 0.9488888888888889, 0.9466666666666667, 0.18888888888888888, 0.20666666666666667, 0.20666666666666667, 0.28, 0.9377777777777778, 0.34444444444444444, 0.3488888888888889, 0.33111111111111113, 0.32666666666666666, 0.3422222222222222, 0.3511111111111111, 0.36444444444444446, 0.37333333333333335, 0.4022222222222222, 0.4111111111111111], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Serine_rich.gap.json b/pfam_gap_rates/Serine_rich.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..7efafa5f5c9f92007b943322ef35f9738b4d3bf9
--- /dev/null
+++ b/pfam_gap_rates/Serine_rich.gap.json
@@ -0,0 +1 @@
+{"family": "Serine_rich", "n_seqs": 103, "length": 173, "gap_rates": [0.2524271844660194, 0.23300970873786409, 0.23300970873786409, 0.22330097087378642, 0.22330097087378642, 0.21359223300970873, 0.21359223300970873, 0.20388349514563106, 0.1941747572815534, 0.1941747572815534, 0.1941747572815534, 0.1941747572815534, 0.1941747572815534, 0.1941747572815534, 0.1941747572815534, 0.18446601941747573, 0.1553398058252427, 0.13592233009708737, 0.1262135922330097, 0.1262135922330097, 0.1262135922330097, 0.1262135922330097, 0.1262135922330097, 0.1262135922330097, 0.11650485436893204, 0.0970873786407767, 0.0970873786407767, 0.10679611650485436, 0.883495145631068, 0.10679611650485436, 0.10679611650485436, 0.10679611650485436, 0.941747572815534, 0.941747572815534, 0.941747572815534, 0.941747572815534, 0.9320388349514563, 0.0970873786407767, 0.08737864077669903, 0.08737864077669903, 0.941747572815534, 0.08737864077669903, 0.08737864077669903, 0.0970873786407767, 0.08737864077669903, 0.07766990291262135, 0.07766990291262135, 0.07766990291262135, 0.07766990291262135, 0.07766990291262135, 0.07766990291262135, 0.07766990291262135, 0.07766990291262135, 0.07766990291262135, 0.07766990291262135, 0.06796116504854369, 0.07766990291262135, 0.07766990291262135, 0.07766990291262135, 0.07766990291262135, 0.08737864077669903, 0.08737864077669903, 0.08737864077669903, 0.08737864077669903, 0.08737864077669903, 0.08737864077669903, 0.08737864077669903, 0.08737864077669903, 0.0970873786407767, 0.0970873786407767, 0.0970873786407767, 0.08737864077669903, 0.08737864077669903, 0.08737864077669903, 0.08737864077669903, 0.08737864077669903, 0.08737864077669903, 0.08737864077669903, 0.10679611650485436, 0.10679611650485436, 0.10679611650485436, 0.11650485436893204, 0.1262135922330097, 0.13592233009708737, 0.1650485436893204, 0.1262135922330097, 0.10679611650485436, 0.06796116504854369, 0.038834951456310676, 0.02912621359223301, 0.02912621359223301, 0.02912621359223301, 0.02912621359223301, 0.02912621359223301, 0.02912621359223301, 0.02912621359223301, 0.02912621359223301, 0.02912621359223301, 0.038834951456310676, 0.04854368932038835, 0.04854368932038835, 0.04854368932038835, 0.04854368932038835, 0.04854368932038835, 0.04854368932038835, 0.04854368932038835, 0.04854368932038835, 0.04854368932038835, 0.038834951456310676, 0.04854368932038835, 0.04854368932038835, 0.04854368932038835, 0.04854368932038835, 0.11650485436893204, 0.11650485436893204, 0.10679611650485436, 0.11650485436893204, 0.11650485436893204, 0.11650485436893204, 0.10679611650485436, 0.10679611650485436, 0.06796116504854369, 0.06796116504854369, 0.06796116504854369, 0.04854368932038835, 0.05825242718446602, 0.07766990291262135, 0.1650485436893204, 0.6893203883495146, 0.8155339805825242, 0.912621359223301, 0.941747572815534, 0.941747572815534, 0.941747572815534, 0.8932038834951457, 0.7572815533980582, 0.6019417475728155, 0.06796116504854369, 0.02912621359223301, 0.02912621359223301, 0.02912621359223301, 0.02912621359223301, 0.02912621359223301, 0.02912621359223301, 0.02912621359223301, 0.02912621359223301, 0.02912621359223301, 0.02912621359223301, 0.02912621359223301, 0.02912621359223301, 0.02912621359223301, 0.04854368932038835, 0.04854368932038835, 0.04854368932038835, 0.04854368932038835, 0.04854368932038835, 0.04854368932038835, 0.05825242718446602, 0.05825242718446602, 0.10679611650485436, 0.14563106796116504, 0.14563106796116504, 0.1650485436893204, 0.1650485436893204, 0.17475728155339806, 0.18446601941747573, 0.18446601941747573, 0.18446601941747573, 0.18446601941747573, 0.18446601941747573, 0.20388349514563106, 0.30097087378640774, 0.8446601941747572], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Sgf11.gap.json b/pfam_gap_rates/Sgf11.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..898bd2043f65794b96b0e947fd48fad637cffe01
--- /dev/null
+++ b/pfam_gap_rates/Sgf11.gap.json
@@ -0,0 +1 @@
+{"family": "Sgf11", "n_seqs": 212, "length": 33, "gap_rates": [0.7877358490566038, 0.4858490566037736, 0.18396226415094338, 0.0660377358490566, 0.009433962264150943, 0.0047169811320754715, 0.0047169811320754715, 0.0047169811320754715, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0047169811320754715, 0.0047169811320754715, 0.018867924528301886, 0.11320754716981132, 0.08490566037735849, 0.09433962264150944, 0.18867924528301888, 0.6084905660377359], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Sigma70_r4.gap.json b/pfam_gap_rates/Sigma70_r4.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..2afd43380e4735dcd7d3628c91a4b01db6b3373e
--- /dev/null
+++ b/pfam_gap_rates/Sigma70_r4.gap.json
@@ -0,0 +1 @@
+{"family": "Sigma70_r4", "n_seqs": 5000, "length": 55, "gap_rates": [0.3974, 0.1664, 0.1242, 0.0584, 0.0406, 0.0332, 0.0278, 0.0234, 0.0212, 0.0186, 0.0156, 0.0146, 0.014, 0.0096, 0.0072, 0.006, 0.006, 0.4046, 0.5012, 0.9498, 0.4682, 0.4018, 0.0052, 0.002, 0.0016, 0.003, 0.0006, 0.0006, 0.0004, 0.0004, 0.0004, 0.0002, 0.0002, 0.0002, 0.0002, 0.0004, 0.0004, 0.0004, 0.0006, 0.0016, 0.0018, 0.0018, 0.0024, 0.0028, 0.003, 0.0034, 0.0044, 0.0062, 0.0096, 0.0132, 0.0188, 0.0288, 0.0394, 0.1054, 0.3798], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Sirohm_synth_C.gap.json b/pfam_gap_rates/Sirohm_synth_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..fb7650bef89a151d090a90f01bb4f6eab930d0a4
--- /dev/null
+++ b/pfam_gap_rates/Sirohm_synth_C.gap.json
@@ -0,0 +1 @@
+{"family": "Sirohm_synth_C", "n_seqs": 208, "length": 83, "gap_rates": [0.49038461538461536, 0.4807692307692308, 0.42788461538461536, 0.3798076923076923, 0.33653846153846156, 0.3317307692307692, 0.3317307692307692, 0.3317307692307692, 0.3317307692307692, 0.3269230769230769, 0.32211538461538464, 0.32211538461538464, 0.32211538461538464, 0.32211538461538464, 0.32211538461538464, 0.32211538461538464, 0.32211538461538464, 0.32211538461538464, 0.3125, 0.3125, 0.2932692307692308, 0.2692307692307692, 0.21634615384615385, 0.1875, 0.16346153846153846, 0.7259615384615384, 0.6826923076923077, 0.04326923076923077, 0.04326923076923077, 0.03365384615384615, 0.03365384615384615, 0.004807692307692308, 0.8990384615384616, 0.9230769230769231, 0.9326923076923077, 0.9375, 0.9423076923076923, 0.9471153846153846, 0.9471153846153846, 0.9423076923076923, 0.9375, 0.9278846153846154, 0.9134615384615384, 0.8894230769230769, 0.004807692307692308, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.004807692307692308, 0.0, 0.004807692307692308, 0.004807692307692308, 0.004807692307692308, 0.004807692307692308, 0.02403846153846154, 0.02403846153846154, 0.03365384615384615, 0.04326923076923077, 0.04326923076923077, 0.04807692307692308, 0.04807692307692308, 0.057692307692307696, 0.8269230769230769, 0.08653846153846154, 0.1346153846153846, 0.14423076923076922, 0.16826923076923078, 0.2644230769230769, 0.3269230769230769, 0.5, 0.5721153846153846, 0.6490384615384616], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Sld5.gap.json b/pfam_gap_rates/Sld5.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..9724a5d13f82e191e7d4d955ab7b64dc15a73a5d
--- /dev/null
+++ b/pfam_gap_rates/Sld5.gap.json
@@ -0,0 +1 @@
+{"family": "Sld5", "n_seqs": 961, "length": 176, "gap_rates": [0.777315296566077, 0.34443288241415193, 0.2778355879292404, 0.27471383975026015, 0.2684703433922997, 0.26742976066597296, 0.2695109261186264, 0.26326742976066597, 0.259105098855359, 0.25390218522372526, 0.2497398543184183, 0.3465140478668054, 0.8740894901144641, 0.9167533818938606, 0.9209157127991675, 0.9396462018730489, 0.9177939646201873, 0.9115504682622269, 0.8553590010405827, 0.25806451612903225, 0.2559833506763788, 0.24245577523413112, 0.2393340270551509, 0.23829344432882413, 0.23621227887617066, 0.2351716961498439, 0.23413111342351717, 0.2351716961498439, 0.24765868886576484, 0.24869927159209157, 0.24349635796045785, 0.24349635796045785, 0.2351716961498439, 0.2008324661810614, 0.17585848074921956, 0.16649323621227888, 0.15400624349635797, 0.13735691987513007, 0.13527575442247658, 0.1279916753381894, 0.12695109261186263, 0.12382934443288242, 0.1259105098855359, 0.13111342351716962, 0.13007284079084286, 0.13111342351716962, 0.11238293444328824, 0.7887617065556711, 0.8616024973985432, 0.882414151925078, 0.8886576482830385, 0.899063475546306, 0.9063475546305931, 0.9250780437044746, 0.9292403746097815, 0.931321540062435, 0.9323621227887617, 0.9323621227887617, 0.9323621227887617, 0.9334027055150884, 0.9365244536940687, 0.9386056191467221, 0.9396462018730489, 0.9427679500520292, 0.9427679500520292, 0.9479708636836629, 0.9427679500520292, 0.9427679500520292, 0.9386056191467221, 0.9365244536940687, 0.9344432882414152, 0.9334027055150884, 0.9323621227887617, 0.9323621227887617, 0.931321540062435, 0.9302809573361083, 0.927159209157128, 0.9240374609781478, 0.9042663891779397, 0.8938605619146722, 0.8855359001040582, 0.8761706555671176, 0.8511966701352758, 0.6399583766909469, 0.4797086368366285, 0.24661810613943808, 0.222684703433923, 0.20291363163371487, 0.11030176899063475, 0.09469302809573361, 0.08116545265348596, 0.07908428720083246, 0.06763787721123829, 0.060353798126951096, 0.055150884495317375, 0.05098855359001041, 0.04890738813735692, 0.04266389177939646, 0.045785639958376693, 0.03433922996878252, 0.022892819979188347, 0.02497398543184183, 0.019771071800208116, 0.021852237252861603, 0.022892819979188347, 0.02809573361082206, 0.11238293444328824, 0.5816857440166493, 0.6326742976066597, 0.918834547346514, 0.9302809573361083, 0.9427679500520292, 0.9334027055150884, 0.9281997918834547, 0.8751300728407908, 0.6139438085327783, 0.5556711758584808, 0.5275754422476587, 0.3548387096774194, 0.3506763787721124, 0.27055150884495316, 0.023933402705515087, 0.02497398543184183, 0.026014568158168574, 0.019771071800208116, 0.019771071800208116, 0.019771071800208116, 0.019771071800208116, 0.021852237252861603, 0.02497398543184183, 0.02497398543184183, 0.026014568158168574, 0.026014568158168574, 0.02809573361082206, 0.029136316337148804, 0.030176899063475548, 0.03329864724245578, 0.03433922996878252, 0.03433922996878252, 0.03537981269510926, 0.037460978147762745, 0.046826222684703434, 0.04890738813735692, 0.05723204994797086, 0.06555671175858481, 0.06867845993756504, 0.07180020811654526, 0.8283038501560874, 0.8647242455775234, 0.8803329864724245, 0.9042663891779397, 0.9250780437044746, 0.9375650364203955, 0.9448491155046826, 0.9302809573361083, 0.9157127991675338, 0.8896982310093653, 0.8751300728407908, 0.850156087408949, 0.8116545265348595, 0.740894901144641, 0.7315296566077003, 0.619146722164412, 0.44432882414151925, 0.39542143600416235, 0.20291363163371487, 0.19771071800208118, 0.19042663891779396, 0.19458896982310095, 0.1987513007284079, 0.20187304890738814, 0.21227887617065558, 0.22892819979188345, 0.23829344432882413, 0.25286160249739853, 0.6118626430801248], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/SnAC.gap.json b/pfam_gap_rates/SnAC.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..da0bd8332e37cd783d9ed95e42621459f0f2121e
--- /dev/null
+++ b/pfam_gap_rates/SnAC.gap.json
@@ -0,0 +1 @@
+{"family": "SnAC", "n_seqs": 332, "length": 103, "gap_rates": [0.7018072289156626, 0.4126506024096386, 0.39457831325301207, 0.37650602409638556, 0.35240963855421686, 0.34036144578313254, 0.33433734939759036, 0.8343373493975904, 0.9006024096385542, 0.9036144578313253, 0.9457831325301205, 0.9156626506024096, 0.9006024096385542, 0.8343373493975904, 0.8343373493975904, 0.3674698795180723, 0.3885542168674699, 0.8343373493975904, 0.9156626506024096, 0.8825301204819277, 0.7771084337349398, 0.4789156626506024, 0.3644578313253012, 0.3192771084337349, 0.29819277108433734, 0.22590361445783133, 0.22590361445783133, 0.1927710843373494, 0.15963855421686746, 0.9307228915662651, 0.06626506024096386, 0.1144578313253012, 0.17771084337349397, 0.03614457831325301, 0.012048192771084338, 0.009036144578313253, 0.006024096385542169, 0.006024096385542169, 0.006024096385542169, 0.006024096385542169, 0.006024096385542169, 0.006024096385542169, 0.006024096385542169, 0.006024096385542169, 0.006024096385542169, 0.006024096385542169, 0.006024096385542169, 0.006024096385542169, 0.006024096385542169, 0.858433734939759, 0.8403614457831325, 0.8885542168674698, 0.15963855421686746, 0.8945783132530121, 0.9126506024096386, 0.927710843373494, 0.9307228915662651, 0.9367469879518072, 0.9307228915662651, 0.9186746987951807, 0.9006024096385542, 0.8885542168674698, 0.4879518072289157, 0.37650602409638556, 0.2740963855421687, 0.1536144578313253, 0.09036144578313253, 0.045180722891566265, 0.04819277108433735, 0.10542168674698796, 0.12650602409638553, 0.12048192771084337, 0.18373493975903615, 0.11746987951807229, 0.0572289156626506, 0.018072289156626505, 0.012048192771084338, 0.0, 0.006024096385542169, 0.0, 0.009036144578313253, 0.9337349397590361, 0.024096385542168676, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0030120481927710845, 0.0, 0.0, 0.0, 0.0, 0.9457831325301205, 0.0, 0.006024096385542169, 0.009036144578313253, 0.009036144578313253, 0.009036144578313253, 0.018072289156626505, 0.015060240963855422, 0.024096385542168676, 0.1144578313253012], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Sod_Cu.gap.json b/pfam_gap_rates/Sod_Cu.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..28656ff7d58244c09a48162b6b84b2652148bd82
--- /dev/null
+++ b/pfam_gap_rates/Sod_Cu.gap.json
@@ -0,0 +1 @@
+{"family": "Sod_Cu", "n_seqs": 1560, "length": 178, "gap_rates": [0.9108974358974359, 0.632051282051282, 0.3006410256410256, 0.1987179487179487, 0.14358974358974358, 0.11666666666666667, 0.11025641025641025, 0.10384615384615385, 0.10192307692307692, 0.0967948717948718, 0.09358974358974359, 0.09294871794871795, 0.09230769230769231, 0.09358974358974359, 0.09807692307692308, 0.7301282051282051, 0.9006410256410257, 0.7621794871794871, 0.517948717948718, 0.08782051282051281, 0.05961538461538462, 0.0532051282051282, 0.05128205128205128, 0.04487179487179487, 0.04423076923076923, 0.04294871794871795, 0.041666666666666664, 0.03782051282051282, 0.035897435897435895, 0.03461538461538462, 0.03461538461538462, 0.03333333333333333, 0.8756410256410256, 0.9198717948717948, 0.9442307692307692, 0.8903846153846153, 0.8326923076923077, 0.04487179487179487, 0.10064102564102564, 0.46923076923076923, 0.14166666666666666, 0.026923076923076925, 0.026923076923076925, 0.026282051282051282, 0.026282051282051282, 0.026282051282051282, 0.02564102564102564, 0.02564102564102564, 0.027564102564102563, 0.023076923076923078, 0.9397435897435897, 0.9487179487179487, 0.95, 0.9397435897435897, 0.933974358974359, 0.04423076923076923, 0.03333333333333333, 0.05576923076923077, 0.05576923076923077, 0.03717948717948718, 0.823076923076923, 0.8621794871794872, 0.9237179487179488, 0.9288461538461539, 0.9282051282051282, 0.8897435897435897, 0.85, 0.6474358974358975, 0.029487179487179487, 0.020512820512820513, 0.019230769230769232, 0.01730769230769231, 0.016025641025641024, 0.017948717948717947, 0.01858974358974359, 0.01858974358974359, 0.026282051282051282, 0.026923076923076925, 0.04423076923076923, 0.04358974358974359, 0.9275641025641026, 0.04230769230769231, 0.03974358974358974, 0.03397435897435897, 0.0391025641025641, 0.1814102564102564, 0.18525641025641026, 0.9301282051282052, 0.19743589743589743, 0.17051282051282052, 0.28397435897435896, 0.8179487179487179, 0.9032051282051282, 0.9352564102564103, 0.8673076923076923, 0.7865384615384615, 0.22371794871794873, 0.06666666666666667, 0.041666666666666664, 0.035897435897435895, 0.035256410256410256, 0.03141025641025641, 0.025, 0.025, 0.09807692307692308, 0.07051282051282051, 0.07115384615384615, 0.06282051282051282, 0.9429487179487179, 0.06794871794871794, 0.05064102564102564, 0.0391025641025641, 0.03012820512820513, 0.03653846153846154, 0.04230769230769231, 0.035256410256410256, 0.032692307692307694, 0.06474358974358975, 0.052564102564102565, 0.08205128205128205, 0.7224358974358974, 0.057692307692307696, 0.051923076923076926, 0.10833333333333334, 0.05512820512820513, 0.038461538461538464, 0.04358974358974359, 0.04487179487179487, 0.26794871794871794, 0.2717948717948718, 0.25961538461538464, 0.8814102564102564, 0.7711538461538462, 0.046794871794871795, 0.04294871794871795, 0.035256410256410256, 0.892948717948718, 0.8961538461538462, 0.8801282051282051, 0.03076923076923077, 0.03141025641025641, 0.03205128205128205, 0.032692307692307694, 0.03333333333333333, 0.035256410256410256, 0.03717948717948718, 0.1423076923076923, 0.09230769230769231, 0.11089743589743589, 0.10064102564102564, 0.16538461538461538, 0.23974358974358975, 0.5583333333333333, 0.6141025641025641, 0.6237179487179487, 0.9461538461538461, 0.9467948717948718, 0.9442307692307692, 0.6198717948717949, 0.6083333333333333, 0.5429487179487179, 0.2865384615384615, 0.2833333333333333, 0.2685897435897436, 0.257051282051282, 0.2519230769230769, 0.2391025641025641, 0.22692307692307692, 0.2, 0.16987179487179488, 0.1576923076923077, 0.15705128205128205, 0.15833333333333333, 0.15897435897435896, 0.15897435897435896, 0.183974358974359, 0.21987179487179487, 0.26987179487179486], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Spc24.gap.json b/pfam_gap_rates/Spc24.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..5a30ff3c0567f4a53232077b81219ba8ffb96eee
--- /dev/null
+++ b/pfam_gap_rates/Spc24.gap.json
@@ -0,0 +1 @@
+{"family": "Spc24", "n_seqs": 153, "length": 142, "gap_rates": [0.5228758169934641, 0.20915032679738563, 0.1503267973856209, 0.13071895424836602, 0.12418300653594772, 0.12418300653594772, 0.09803921568627451, 0.0915032679738562, 0.058823529411764705, 0.058823529411764705, 0.058823529411764705, 0.05228758169934641, 0.0392156862745098, 0.032679738562091505, 0.032679738562091505, 0.026143790849673203, 0.026143790849673203, 0.0196078431372549, 0.0196078431372549, 0.0196078431372549, 0.013071895424836602, 0.006535947712418301, 0.006535947712418301, 0.006535947712418301, 0.006535947712418301, 0.006535947712418301, 0.006535947712418301, 0.006535947712418301, 0.006535947712418301, 0.006535947712418301, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.45098039215686275, 0.7189542483660131, 0.8758169934640523, 0.9019607843137255, 0.9411764705882353, 0.9281045751633987, 0.8954248366013072, 0.8235294117647058, 0.6535947712418301, 0.3464052287581699, 0.09803921568627451, 0.39215686274509803, 0.37254901960784315, 0.35947712418300654, 0.13071895424836602, 0.5816993464052288, 0.7320261437908496, 0.8823529411764706, 0.9281045751633987, 0.9084967320261438, 0.8627450980392157, 0.6601307189542484, 0.5555555555555556, 0.08496732026143791, 0.058823529411764705, 0.6601307189542484, 0.0196078431372549, 0.0196078431372549, 0.0196078431372549, 0.006535947712418301, 0.934640522875817, 0.9411764705882353, 0.9150326797385621, 0.006535947712418301, 0.006535947712418301, 0.006535947712418301, 0.006535947712418301, 0.006535947712418301, 0.006535947712418301, 0.006535947712418301, 0.006535947712418301, 0.006535947712418301, 0.8235294117647058, 0.006535947712418301, 0.006535947712418301, 0.006535947712418301, 0.006535947712418301, 0.9084967320261438, 0.9477124183006536, 0.9477124183006536, 0.9019607843137255, 0.006535947712418301, 0.026143790849673203, 0.0196078431372549, 0.27450980392156865, 0.43137254901960786, 0.9477124183006536, 0.6928104575163399, 0.33986928104575165, 0.2549019607843137, 0.0915032679738562, 0.032679738562091505, 0.0196078431372549, 0.0196078431372549, 0.0196078431372549, 0.0196078431372549, 0.0196078431372549, 0.026143790849673203, 0.026143790849673203, 0.026143790849673203, 0.026143790849673203, 0.8431372549019608, 0.9411764705882353, 0.8169934640522876, 0.1503267973856209, 0.0784313725490196, 0.0392156862745098, 0.026143790849673203, 0.032679738562091505, 0.032679738562091505, 0.032679738562091505, 0.032679738562091505, 0.032679738562091505, 0.0718954248366013, 0.7647058823529411, 0.0457516339869281, 0.0392156862745098, 0.0392156862745098, 0.0457516339869281, 0.0392156862745098, 0.0392156862745098, 0.0457516339869281, 0.0457516339869281, 0.0457516339869281, 0.0457516339869281, 0.0457516339869281, 0.0457516339869281, 0.0784313725490196, 0.6013071895424836], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Spo7.gap.json b/pfam_gap_rates/Spo7.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..703931fc61fd9f2637156c4501f4d761080fa40c
--- /dev/null
+++ b/pfam_gap_rates/Spo7.gap.json
@@ -0,0 +1 @@
+{"family": "Spo7", "n_seqs": 135, "length": 314, "gap_rates": [0.5037037037037037, 0.45185185185185184, 0.37037037037037035, 0.23703703703703705, 0.13333333333333333, 0.0962962962962963, 0.08888888888888889, 0.08888888888888889, 0.08148148148148149, 0.08148148148148149, 0.07407407407407407, 0.07407407407407407, 0.05925925925925926, 0.05925925925925926, 0.05925925925925926, 0.05925925925925926, 0.05925925925925926, 0.05925925925925926, 0.05925925925925926, 0.05925925925925926, 0.05925925925925926, 0.05925925925925926, 0.05925925925925926, 0.05925925925925926, 0.05925925925925926, 0.05925925925925926, 0.05925925925925926, 0.05925925925925926, 0.05925925925925926, 0.05925925925925926, 0.05925925925925926, 0.05925925925925926, 0.05925925925925926, 0.05925925925925926, 0.05925925925925926, 0.05925925925925926, 0.05925925925925926, 0.05925925925925926, 0.05925925925925926, 0.05925925925925926, 0.06666666666666667, 0.06666666666666667, 0.07407407407407407, 0.06666666666666667, 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\ No newline at end of file
diff --git a/pfam_gap_rates/SpoIIP.gap.json b/pfam_gap_rates/SpoIIP.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..2d8fe0f0601c489f529856d70b6957a770b9a5e5
--- /dev/null
+++ b/pfam_gap_rates/SpoIIP.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/SpoVA.gap.json b/pfam_gap_rates/SpoVA.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..fd4d37a77ff179f9d791fe5486b369adaa38a65e
--- /dev/null
+++ b/pfam_gap_rates/SpoVA.gap.json
@@ -0,0 +1 @@
+{"family": "SpoVA", "n_seqs": 850, "length": 119, "gap_rates": [0.41294117647058826, 0.06, 0.024705882352941175, 0.01411764705882353, 0.01411764705882353, 0.012941176470588235, 0.011764705882352941, 0.010588235294117647, 0.010588235294117647, 0.009411764705882352, 0.009411764705882352, 0.009411764705882352, 0.009411764705882352, 0.00823529411764706, 0.00823529411764706, 0.00823529411764706, 0.00823529411764706, 0.00823529411764706, 0.00823529411764706, 0.007058823529411765, 0.007058823529411765, 0.007058823529411765, 0.007058823529411765, 0.4752941176470588, 0.8435294117647059, 0.02235294117647059, 0.010588235294117647, 0.5035294117647059, 0.8388235294117647, 0.5223529411764706, 0.5, 0.4988235294117647, 0.4964705882352941, 0.49411764705882355, 0.009411764705882352, 0.009411764705882352, 0.007058823529411765, 0.007058823529411765, 0.007058823529411765, 0.007058823529411765, 0.007058823529411765, 0.007058823529411765, 0.007058823529411765, 0.0058823529411764705, 0.0058823529411764705, 0.004705882352941176, 0.004705882352941176, 0.004705882352941176, 0.0035294117647058825, 0.0035294117647058825, 0.0035294117647058825, 0.0035294117647058825, 0.004705882352941176, 0.004705882352941176, 0.004705882352941176, 0.004705882352941176, 0.004705882352941176, 0.004705882352941176, 0.004705882352941176, 0.004705882352941176, 0.004705882352941176, 0.004705882352941176, 0.004705882352941176, 0.004705882352941176, 0.0058823529411764705, 0.004705882352941176, 0.004705882352941176, 0.004705882352941176, 0.004705882352941176, 0.004705882352941176, 0.004705882352941176, 0.004705882352941176, 0.004705882352941176, 0.004705882352941176, 0.004705882352941176, 0.004705882352941176, 0.004705882352941176, 0.004705882352941176, 0.004705882352941176, 0.0035294117647058825, 0.0035294117647058825, 0.0035294117647058825, 0.0035294117647058825, 0.0035294117647058825, 0.0035294117647058825, 0.004705882352941176, 0.004705882352941176, 0.00823529411764706, 0.01411764705882353, 0.010588235294117647, 0.010588235294117647, 0.010588235294117647, 0.007058823529411765, 0.007058823529411765, 0.00823529411764706, 0.00823529411764706, 0.00823529411764706, 0.00823529411764706, 0.00823529411764706, 0.00823529411764706, 0.00823529411764706, 0.00823529411764706, 0.009411764705882352, 0.009411764705882352, 0.009411764705882352, 0.009411764705882352, 0.009411764705882352, 0.009411764705882352, 0.009411764705882352, 0.009411764705882352, 0.009411764705882352, 0.009411764705882352, 0.010588235294117647, 0.012941176470588235, 0.012941176470588235, 0.012941176470588235, 0.012941176470588235, 0.018823529411764704, 0.3023529411764706], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/SporV_AA.gap.json b/pfam_gap_rates/SporV_AA.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..32ddd4a415b4d8a797326b8fc7a13834dee42389
--- /dev/null
+++ b/pfam_gap_rates/SporV_AA.gap.json
@@ -0,0 +1 @@
+{"family": "SporV_AA", "n_seqs": 165, "length": 95, "gap_rates": [0.8545454545454545, 0.34545454545454546, 0.08484848484848485, 0.03636363636363636, 0.024242424242424242, 0.01818181818181818, 0.01818181818181818, 0.01818181818181818, 0.01818181818181818, 0.01818181818181818, 0.01818181818181818, 0.01818181818181818, 0.01818181818181818, 0.01818181818181818, 0.01818181818181818, 0.48484848484848486, 0.012121212121212121, 0.012121212121212121, 0.012121212121212121, 0.006060606060606061, 0.006060606060606061, 0.006060606060606061, 0.006060606060606061, 0.006060606060606061, 0.006060606060606061, 0.006060606060606061, 0.006060606060606061, 0.006060606060606061, 0.006060606060606061, 0.006060606060606061, 0.3696969696969697, 0.030303030303030304, 0.01818181818181818, 0.048484848484848485, 0.01818181818181818, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.01818181818181818, 0.0, 0.0, 0.0, 0.0, 0.048484848484848485, 0.9151515151515152, 0.9393939393939394, 0.9151515151515152, 0.9151515151515152, 0.01818181818181818, 0.024242424242424242, 0.006060606060606061, 0.006060606060606061, 0.9454545454545454, 0.0, 0.006060606060606061, 0.006060606060606061, 0.006060606060606061, 0.006060606060606061, 0.006060606060606061, 0.006060606060606061, 0.006060606060606061, 0.006060606060606061, 0.006060606060606061, 0.006060606060606061, 0.006060606060606061, 0.006060606060606061, 0.006060606060606061, 0.006060606060606061, 0.006060606060606061, 0.006060606060606061, 0.006060606060606061, 0.006060606060606061, 0.006060606060606061, 0.006060606060606061, 0.006060606060606061, 0.006060606060606061, 0.006060606060606061, 0.006060606060606061, 0.006060606060606061, 0.006060606060606061, 0.006060606060606061, 0.006060606060606061, 0.006060606060606061, 0.006060606060606061, 0.006060606060606061, 0.012121212121212121, 0.03636363636363636, 0.09696969696969697, 0.9272727272727272, 0.6424242424242425], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Spore_YtfJ.gap.json b/pfam_gap_rates/Spore_YtfJ.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..2507237b7ebcbd1ac2ee1636fc2edfa3d74d88c0
--- /dev/null
+++ b/pfam_gap_rates/Spore_YtfJ.gap.json
@@ -0,0 +1 @@
+{"family": "Spore_YtfJ", "n_seqs": 464, "length": 99, "gap_rates": [0.2974137931034483, 0.22413793103448276, 0.1336206896551724, 0.09267241379310345, 0.04741379310344827, 0.32112068965517243, 0.01293103448275862, 0.01293103448275862, 0.01293103448275862, 0.01293103448275862, 0.01293103448275862, 0.01293103448275862, 0.010775862068965518, 0.010775862068965518, 0.010775862068965518, 0.010775862068965518, 0.010775862068965518, 0.008620689655172414, 0.010775862068965518, 0.010775862068965518, 0.008620689655172414, 0.00646551724137931, 0.00646551724137931, 0.00646551724137931, 0.008620689655172414, 0.010775862068965518, 0.2672413793103448, 0.2629310344827586, 0.2543103448275862, 0.20474137931034483, 0.43103448275862066, 0.5043103448275862, 0.6228448275862069, 0.7198275862068966, 0.7844827586206896, 0.8211206896551724, 0.8706896551724138, 0.9353448275862069, 0.9008620689655172, 0.8469827586206896, 0.8017241379310345, 0.7672413793103449, 0.6702586206896551, 0.5538793103448276, 0.47198275862068967, 0.40086206896551724, 0.2025862068965517, 0.0668103448275862, 0.04310344827586207, 0.03017241379310345, 0.015086206896551725, 0.008620689655172414, 0.00646551724137931, 0.00646551724137931, 0.00646551724137931, 0.00646551724137931, 0.008620689655172414, 0.00646551724137931, 0.010775862068965518, 0.010775862068965518, 0.008620689655172414, 0.015086206896551725, 0.01293103448275862, 0.01293103448275862, 0.01293103448275862, 0.015086206896551725, 0.015086206896551725, 0.015086206896551725, 0.015086206896551725, 0.015086206896551725, 0.015086206896551725, 0.021551724137931036, 0.017241379310344827, 0.015086206896551725, 0.015086206896551725, 0.017241379310344827, 0.023706896551724137, 0.028017241379310345, 0.034482758620689655, 0.04741379310344827, 0.04741379310344827, 0.5991379310344828, 0.9073275862068966, 0.06896551724137931, 0.05818965517241379, 0.0603448275862069, 0.0603448275862069, 0.0603448275862069, 0.0625, 0.06465517241379311, 0.0668103448275862, 0.07543103448275862, 0.07758620689655173, 0.07758620689655173, 0.08405172413793104, 0.09267241379310345, 0.10129310344827586, 0.12931034482758622, 0.36637931034482757], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Spore_YunB.gap.json b/pfam_gap_rates/Spore_YunB.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c254affddbeb93ad3afff80b6ed4f1333f4d2507
--- /dev/null
+++ b/pfam_gap_rates/Spore_YunB.gap.json
@@ -0,0 +1 @@
+{"family": "Spore_YunB", "n_seqs": 293, "length": 91, "gap_rates": [0.931740614334471, 0.23208191126279865, 0.013651877133105802, 0.013651877133105802, 0.013651877133105802, 0.013651877133105802, 0.013651877133105802, 0.013651877133105802, 0.006825938566552901, 0.006825938566552901, 0.0034129692832764505, 0.0034129692832764505, 0.0034129692832764505, 0.0034129692832764505, 0.0034129692832764505, 0.006825938566552901, 0.013651877133105802, 0.010238907849829351, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0034129692832764505, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0034129692832764505, 0.0034129692832764505, 0.020477815699658702, 0.3515358361774744], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Spt5-NGN.gap.json b/pfam_gap_rates/Spt5-NGN.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a255165c0725e2c79a9e2c2bccbe2f4490c7e3df
--- /dev/null
+++ b/pfam_gap_rates/Spt5-NGN.gap.json
@@ -0,0 +1 @@
+{"family": "Spt5-NGN", "n_seqs": 490, "length": 93, "gap_rates": [0.3163265306122449, 0.053061224489795916, 0.04693877551020408, 0.04693877551020408, 0.044897959183673466, 0.04285714285714286, 0.04285714285714286, 0.03877551020408163, 0.03469387755102041, 0.03469387755102041, 0.03469387755102041, 0.03469387755102041, 0.03469387755102041, 0.03469387755102041, 0.03469387755102041, 0.03469387755102041, 0.03469387755102041, 0.03469387755102041, 0.03469387755102041, 0.05102040816326531, 0.04897959183673469, 0.05102040816326531, 0.1836734693877551, 0.2163265306122449, 0.21836734693877552, 0.21224489795918366, 0.17755102040816326, 0.11836734693877551, 0.05714285714285714, 0.0673469387755102, 0.026530612244897958, 0.8489795918367347, 0.9387755102040817, 0.3326530612244898, 0.02857142857142857, 0.014285714285714285, 0.012244897959183673, 0.012244897959183673, 0.01020408163265306, 0.012244897959183673, 0.00816326530612245, 0.006122448979591836, 0.01020408163265306, 0.014285714285714285, 0.0163265306122449, 0.9040816326530612, 0.9183673469387755, 0.9102040816326531, 0.8653061224489796, 0.004081632653061225, 0.004081632653061225, 0.006122448979591836, 0.00816326530612245, 0.00816326530612245, 0.00816326530612245, 0.00816326530612245, 0.00816326530612245, 0.00816326530612245, 0.00816326530612245, 0.00816326530612245, 0.00816326530612245, 0.01020408163265306, 0.01020408163265306, 0.012244897959183673, 0.012244897959183673, 0.012244897959183673, 0.014285714285714285, 0.014285714285714285, 0.014285714285714285, 0.014285714285714285, 0.022448979591836733, 0.022448979591836733, 0.02857142857142857, 0.030612244897959183, 0.030612244897959183, 0.0326530612244898, 0.0326530612244898, 0.03877551020408163, 0.8367346938775511, 0.573469387755102, 0.05714285714285714, 0.05102040816326531, 0.05102040816326531, 0.04897959183673469, 0.04897959183673469, 0.053061224489795916, 0.05510204081632653, 0.05918367346938776, 0.0673469387755102, 0.07346938775510205, 0.07551020408163266, 0.12040816326530612, 0.18775510204081633], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/SseB_C.gap.json b/pfam_gap_rates/SseB_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..5aac16f7eff49693d37aeda334ef5ad8f9b87ee4
--- /dev/null
+++ b/pfam_gap_rates/SseB_C.gap.json
@@ -0,0 +1 @@
+{"family": "SseB_C", "n_seqs": 127, "length": 116, "gap_rates": [0.8818897637795275, 0.5039370078740157, 0.3464566929133858, 0.29133858267716534, 0.2755905511811024, 0.11023622047244094, 0.10236220472440945, 0.10236220472440945, 0.07874015748031496, 0.07086614173228346, 0.07086614173228346, 0.06299212598425197, 0.7874015748031497, 0.7795275590551181, 0.047244094488188976, 0.03937007874015748, 0.03937007874015748, 0.031496062992125984, 0.015748031496062992, 0.007874015748031496, 0.007874015748031496, 0.007874015748031496, 0.007874015748031496, 0.007874015748031496, 0.007874015748031496, 0.007874015748031496, 0.007874015748031496, 0.007874015748031496, 0.007874015748031496, 0.007874015748031496, 0.007874015748031496, 0.007874015748031496, 0.015748031496062992, 0.007874015748031496, 0.007874015748031496, 0.007874015748031496, 0.007874015748031496, 0.007874015748031496, 0.007874015748031496, 0.007874015748031496, 0.007874015748031496, 0.007874015748031496, 0.007874015748031496, 0.007874015748031496, 0.007874015748031496, 0.007874015748031496, 0.007874015748031496, 0.84251968503937, 0.7322834645669292, 0.2283464566929134, 0.023622047244094488, 0.015748031496062992, 0.015748031496062992, 0.015748031496062992, 0.007874015748031496, 0.007874015748031496, 0.007874015748031496, 0.007874015748031496, 0.007874015748031496, 0.007874015748031496, 0.007874015748031496, 0.007874015748031496, 0.5511811023622047, 0.9291338582677166, 0.5826771653543307, 0.4409448818897638, 0.023622047244094488, 0.023622047244094488, 0.007874015748031496, 0.007874015748031496, 0.007874015748031496, 0.007874015748031496, 0.007874015748031496, 0.015748031496062992, 0.007874015748031496, 0.007874015748031496, 0.007874015748031496, 0.007874015748031496, 0.007874015748031496, 0.007874015748031496, 0.007874015748031496, 0.007874015748031496, 0.007874015748031496, 0.023622047244094488, 0.25196850393700787, 0.023622047244094488, 0.031496062992125984, 0.023622047244094488, 0.023622047244094488, 0.023622047244094488, 0.031496062992125984, 0.031496062992125984, 0.031496062992125984, 0.031496062992125984, 0.031496062992125984, 0.03937007874015748, 0.8346456692913385, 0.44881889763779526, 0.3779527559055118, 0.5984251968503937, 0.10236220472440945, 0.05511811023622047, 0.05511811023622047, 0.05511811023622047, 0.05511811023622047, 0.05511811023622047, 0.05511811023622047, 0.05511811023622047, 0.09448818897637795, 0.06299212598425197, 0.06299212598425197, 0.06299212598425197, 0.06299212598425197, 0.06299212598425197, 0.14173228346456693, 0.2283464566929134], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/SspB.gap.json b/pfam_gap_rates/SspB.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..2a4d8bf7fa38720a578c858f172191e13a8ec469
--- /dev/null
+++ b/pfam_gap_rates/SspB.gap.json
@@ -0,0 +1 @@
+{"family": "SspB", "n_seqs": 529, "length": 190, "gap_rates": [0.7731568998109641, 0.12287334593572778, 0.09073724007561437, 0.07372400756143667, 0.07183364839319471, 0.0661625708884688, 0.0661625708884688, 0.062381852551984876, 0.062381852551984876, 0.05860113421550094, 0.054820415879017016, 0.052930056710775046, 0.05103969754253308, 0.05103969754253308, 0.05103969754253308, 0.04914933837429111, 0.6294896030245747, 0.6162570888468809, 0.6162570888468809, 0.6162570888468809, 0.5803402646502835, 0.04914933837429111, 0.3270321361058601, 0.44801512287334594, 0.05103969754253308, 0.04725897920604915, 0.6351606805293005, 0.6257088846880907, 0.6238185255198487, 0.6200378071833649, 0.6162570888468809, 0.03213610586011342, 0.026465028355387523, 0.024574669187145556, 0.026465028355387523, 0.026465028355387523, 0.026465028355387523, 0.026465028355387523, 0.23629489603024575, 0.030245746691871456, 0.026465028355387523, 0.026465028355387523, 0.022684310018903593, 0.022684310018903593, 0.022684310018903593, 0.6068052930056711, 0.6086956521739131, 0.6086956521739131, 0.6011342155009451, 0.02835538752362949, 0.024574669187145556, 0.022684310018903593, 0.024574669187145556, 0.020793950850661626, 0.020793950850661626, 0.020793950850661626, 0.01890359168241966, 0.01890359168241966, 0.015122873345935728, 0.015122873345935728, 0.013232514177693762, 0.40831758034026466, 0.4120982986767486, 0.39697542533081287, 0.011342155009451797, 0.00945179584120983, 0.007561436672967864, 0.011342155009451797, 0.005671077504725898, 0.005671077504725898, 0.005671077504725898, 0.005671077504725898, 0.005671077504725898, 0.005671077504725898, 0.005671077504725898, 0.005671077504725898, 0.005671077504725898, 0.005671077504725898, 0.005671077504725898, 0.005671077504725898, 0.003780718336483932, 0.003780718336483932, 0.003780718336483932, 0.003780718336483932, 0.001890359168241966, 0.001890359168241966, 0.001890359168241966, 0.001890359168241966, 0.001890359168241966, 0.001890359168241966, 0.001890359168241966, 0.001890359168241966, 0.001890359168241966, 0.001890359168241966, 0.001890359168241966, 0.001890359168241966, 0.001890359168241966, 0.001890359168241966, 0.001890359168241966, 0.001890359168241966, 0.003780718336483932, 0.003780718336483932, 0.007561436672967864, 0.005671077504725898, 0.005671077504725898, 0.005671077504725898, 0.005671077504725898, 0.005671077504725898, 0.005671077504725898, 0.007561436672967864, 0.007561436672967864, 0.28166351606805295, 0.015122873345935728, 0.013232514177693762, 0.011342155009451797, 0.04158790170132325, 0.026465028355387523, 0.022684310018903593, 0.024574669187145556, 0.05103969754253308, 0.04914933837429111, 0.05671077504725898, 0.08128544423440454, 0.09262759924385633, 0.10207939508506617, 0.13610586011342155, 0.15500945179584122, 0.20415879017013233, 0.2570888468809074, 0.2722117202268431, 0.2835538752362949, 0.3553875236294896, 0.4102079395085066, 0.44801512287334594, 0.499054820415879, 0.5500945179584121, 0.5066162570888468, 0.6918714555765595, 0.7145557655954632, 0.7448015122873346, 0.7958412098298677, 0.8204158790170132, 0.8374291115311909, 0.8620037807183365, 0.8941398865784499, 0.9130434782608695, 0.9319470699432892, 0.9395085066162571, 0.945179584120983, 0.9376181474480151, 0.9206049149338374, 0.9111531190926276, 0.8865784499054821, 0.8544423440453687, 0.8279773156899811, 0.8071833648393195, 0.7712665406427222, 0.7296786389413988, 0.7069943289224953, 0.6824196597353497, 0.5179584120982986, 0.6408317580340265, 0.5841209829867675, 0.5293005671077504, 0.500945179584121, 0.4952741020793951, 0.4896030245746692, 0.48582230623818523, 0.4877126654064272, 0.4914933837429111, 0.4914933837429111, 0.4933837429111531, 0.497164461247637, 0.500945179584121, 0.5085066162570888, 0.5141776937618148, 0.5311909262759924, 0.5236294896030246, 0.947069943289225, 0.9357277882797732, 0.5444234404536862, 0.5236294896030246, 0.5274102079395085, 0.5330812854442344, 0.5368620037807184, 0.5368620037807184, 0.5463137996219282, 0.5595463137996219, 0.5652173913043478, 0.6691871455576559], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/StbA.gap.json b/pfam_gap_rates/StbA.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..2419387686eeaa0111e4f1854cf424241d042f02
--- /dev/null
+++ b/pfam_gap_rates/StbA.gap.json
@@ -0,0 +1 @@
+{"family": "StbA", "n_seqs": 127, "length": 336, "gap_rates": [0.9448818897637795, 0.9291338582677166, 0.8976377952755905, 0.8976377952755905, 0.8976377952755905, 0.8976377952755905, 0.8976377952755905, 0.8976377952755905, 0.8976377952755905, 0.8976377952755905, 0.8976377952755905, 0.8976377952755905, 0.8976377952755905, 0.8976377952755905, 0.8976377952755905, 0.8976377952755905, 0.8976377952755905, 0.8976377952755905, 0.8976377952755905, 0.8976377952755905, 0.8976377952755905, 0.8976377952755905, 0.8976377952755905, 0.905511811023622, 0.8976377952755905, 0.8976377952755905, 0.8976377952755905, 0.8976377952755905, 0.889763779527559, 0.889763779527559, 0.8818897637795275, 0.8818897637795275, 0.8818897637795275, 0.8818897637795275, 0.8818897637795275, 0.8818897637795275, 0.8818897637795275, 0.8818897637795275, 0.8818897637795275, 0.937007874015748, 0.8740157480314961, 0.8818897637795275, 0.8661417322834646, 0.8582677165354331, 0.8582677165354331, 0.8503937007874016, 0.84251968503937, 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\ No newline at end of file
diff --git a/pfam_gap_rates/Stealth_CR1.gap.json b/pfam_gap_rates/Stealth_CR1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..02852263a5f05cc440028e5b518f83ffa5288c7e
--- /dev/null
+++ b/pfam_gap_rates/Stealth_CR1.gap.json
@@ -0,0 +1 @@
+{"family": "Stealth_CR1", "n_seqs": 271, "length": 28, "gap_rates": [0.5313653136531366, 0.14760147601476015, 0.02952029520295203, 0.014760147601476014, 0.0036900369003690036, 0.0036900369003690036, 0.0036900369003690036, 0.0036900369003690036, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0036900369003690036, 0.007380073800738007, 0.007380073800738007, 0.007380073800738007, 0.014760147601476014, 0.02214022140221402, 0.02952029520295203, 0.06273062730627306, 0.12915129151291513, 0.17712177121771217, 0.2952029520295203, 0.45018450184501846, 0.7047970479704797], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Steroid_dh.gap.json b/pfam_gap_rates/Steroid_dh.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..24efe83a30d3506632a42c0b5d2b1347923ca184
--- /dev/null
+++ b/pfam_gap_rates/Steroid_dh.gap.json
@@ -0,0 +1 @@
+{"family": "Steroid_dh", "n_seqs": 992, "length": 179, "gap_rates": [0.5473790322580645, 0.4637096774193548, 0.43649193548387094, 0.4223790322580645, 0.4183467741935484, 0.40625, 0.4002016129032258, 0.3951612903225806, 0.39213709677419356, 0.3840725806451613, 0.3790322580645161, 0.37399193548387094, 0.7046370967741935, 0.3659274193548387, 0.3629032258064516, 0.36189516129032256, 0.36088709677419356, 0.35786290322580644, 0.45463709677419356, 0.38911290322580644, 0.3659274193548387, 0.38205645161290325, 0.3800403225806452, 0.4838709677419355, 0.3840725806451613, 0.34274193548387094, 0.3316532258064516, 0.3286290322580645, 0.33669354838709675, 0.3407258064516129, 0.34475806451612906, 0.4022177419354839, 0.7973790322580645, 0.8820564516129032, 0.9193548387096774, 0.9495967741935484, 0.9304435483870968, 0.9032258064516129, 0.8467741935483871, 0.7066532258064516, 0.3326612903225806, 0.3014112903225806, 0.2862903225806452, 0.2772177419354839, 0.28225806451612906, 0.27923387096774194, 0.40625, 0.2651209677419355, 0.17842741935483872, 0.14012096774193547, 0.1159274193548387, 0.10584677419354839, 0.1028225806451613, 0.1028225806451613, 0.10383064516129033, 0.10383064516129033, 0.10383064516129033, 0.10786290322580645, 0.10483870967741936, 0.10685483870967742, 0.09879032258064516, 0.09778225806451613, 0.0967741935483871, 0.09475806451612903, 0.09475806451612903, 0.09475806451612903, 0.09475806451612903, 0.09375, 0.09173387096774194, 0.08971774193548387, 0.08971774193548387, 0.08971774193548387, 0.9012096774193549, 0.9133064516129032, 0.9213709677419355, 0.9264112903225806, 0.9334677419354839, 0.9425403225806451, 0.9475806451612904, 0.9344758064516129, 0.9304435483870968, 0.9254032258064516, 0.9173387096774194, 0.907258064516129, 0.8971774193548387, 0.12096774193548387, 0.11995967741935484, 0.12096774193548387, 0.14415322580645162, 0.13911290322580644, 0.09778225806451613, 0.9395161290322581, 0.10887096774193548, 0.08366935483870967, 0.056451612903225805, 0.055443548387096774, 0.05342741935483871, 0.05443548387096774, 0.05443548387096774, 0.05241935483870968, 0.9415322580645161, 0.05443548387096774, 0.055443548387096774, 0.05443548387096774, 0.05241935483870968, 0.05241935483870968, 0.05241935483870968, 0.05241935483870968, 0.05241935483870968, 0.05241935483870968, 0.05241935483870968, 0.05241935483870968, 0.05241935483870968, 0.05342741935483871, 0.05342741935483871, 0.05443548387096774, 0.05342741935483871, 0.05342741935483871, 0.05342741935483871, 0.05443548387096774, 0.05443548387096774, 0.055443548387096774, 0.056451612903225805, 0.05846774193548387, 0.057459677419354836, 0.05846774193548387, 0.056451612903225805, 0.9274193548387096, 0.059475806451612906, 0.9183467741935484, 0.12903225806451613, 0.09475806451612903, 0.08064516129032258, 0.07963709677419355, 0.07963709677419355, 0.08669354838709678, 0.08064516129032258, 0.07862903225806452, 0.08165322580645161, 0.8951612903225806, 0.9334677419354839, 0.8709677419354839, 0.08266129032258064, 0.08266129032258064, 0.08669354838709678, 0.08568548387096774, 0.08770161290322581, 0.08669354838709678, 0.08770161290322581, 0.08770161290322581, 0.08870967741935484, 0.08770161290322581, 0.08770161290322581, 0.08770161290322581, 0.08770161290322581, 0.08770161290322581, 0.08770161290322581, 0.0907258064516129, 0.09475806451612903, 0.09576612903225806, 0.09879032258064516, 0.10383064516129033, 0.10584677419354839, 0.6270161290322581, 0.11189516129032258, 0.11290322580645161, 0.12096774193548387, 0.1219758064516129, 0.125, 0.13407258064516128, 0.13004032258064516, 0.1280241935483871, 0.13306451612903225, 0.1350806451612903, 0.1381048387096774, 0.14112903225806453, 0.1532258064516129, 0.2247983870967742, 0.3709677419354839], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Succ_CoA_lig.gap.json b/pfam_gap_rates/Succ_CoA_lig.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..5bdb42b0f8c18843070013df7a47dabd93fb1372
--- /dev/null
+++ b/pfam_gap_rates/Succ_CoA_lig.gap.json
@@ -0,0 +1 @@
+{"family": "Succ_CoA_lig", "n_seqs": 1479, "length": 140, "gap_rates": [0.34279918864097364, 0.1250845165652468, 0.04056795131845842, 0.016903313049357674, 0.012846517917511832, 0.010818120351588911, 0.010141987829614604, 0.010141987829614604, 0.010141987829614604, 0.010141987829614604, 0.010141987829614604, 0.010141987829614604, 0.010141987829614604, 0.010141987829614604, 0.010818120351588911, 0.010818120351588911, 0.00878972278566599, 0.03989181879648411, 0.04394861392832995, 0.02028397565922921, 0.014198782961460446, 0.014874915483434753, 0.02636916835699797, 0.04665314401622718, 0.050033806626098715, 0.016903313049357674, 0.010141987829614604, 0.009465855307640297, 0.009465855307640297, 0.009465855307640297, 0.00878972278566599, 0.0074374577417173765, 0.0074374577417173765, 0.0074374577417173765, 0.0074374577417173765, 0.0074374577417173765, 0.0074374577417173765, 0.0074374577417173765, 0.0074374577417173765, 0.0074374577417173765, 0.0067613252197430695, 0.0067613252197430695, 0.0067613252197430695, 0.0067613252197430695, 0.0067613252197430695, 0.0067613252197430695, 0.0074374577417173765, 0.0074374577417173765, 0.0074374577417173765, 0.0074374577417173765, 0.0067613252197430695, 0.0074374577417173765, 0.0067613252197430695, 0.008113590263691683, 0.008113590263691683, 0.008113590263691683, 0.008113590263691683, 0.008113590263691683, 0.008113590263691683, 0.008113590263691683, 0.0067613252197430695, 0.0067613252197430695, 0.0067613252197430695, 0.012846517917511832, 0.012170385395537525, 0.012170385395537525, 0.012846517917511832, 0.9249492900608519, 0.016227180527383367, 0.014874915483434753, 0.01757944557133198, 0.018931710615280595, 0.018255578093306288, 0.018255578093306288, 0.016227180527383367, 0.016903313049357674, 0.013522650439486139, 0.010818120351588911, 0.009465855307640297, 0.012846517917511832, 0.06964164976335362, 0.06423258958755916, 0.7376605814739688, 0.00878972278566599, 0.00878972278566599, 0.00878972278566599, 0.00878972278566599, 0.009465855307640297, 0.009465855307640297, 0.010141987829614604, 0.010818120351588911, 0.012170385395537525, 0.018255578093306288, 0.02636916835699797, 0.02636916835699797, 0.0290736984448952, 0.03989181879648411, 0.04056795131845842, 0.0486815415821501, 0.0486815415821501, 0.07234617985125084, 0.07707910750507099, 0.06423258958755916, 0.06896551724137931, 0.11561866125760649, 0.07437457741717377, 0.06152805949966193, 0.05949966193373901, 0.05544286680189317, 0.048005409060175794, 0.04732927653820149, 0.043272481406355645, 0.045300878972278566, 0.05138607167004733, 0.050033806626098715, 0.04935767410412441, 0.04935767410412441, 0.050033806626098715, 0.05070993914807302, 0.05070993914807302, 0.05070993914807302, 0.05070993914807302, 0.05138607167004733, 0.052062204192021636, 0.05273833671399594, 0.05273833671399594, 0.05273833671399594, 0.05273833671399594, 0.05341446923597025, 0.05544286680189317, 0.0581473968897904, 0.05949966193373901, 0.06558485463150777, 0.07031778228532792, 0.07572684246112238, 0.08654496281271129, 0.10277214334009466, 0.15956727518593644, 0.24881676808654496, 0.4746450304259635], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/SufE.gap.json b/pfam_gap_rates/SufE.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f2032b988433c9a64c39b46032ddcf32e1ba517b
--- /dev/null
+++ b/pfam_gap_rates/SufE.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Sulfotransfer_2.gap.json b/pfam_gap_rates/Sulfotransfer_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..8077a659d79bb9b52fbdfec013d3fc60ea456144
--- /dev/null
+++ b/pfam_gap_rates/Sulfotransfer_2.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Sulfotransfer_3.gap.json b/pfam_gap_rates/Sulfotransfer_3.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..63993b5fb96d0871eab88e5c2b28dda61b3e3850
--- /dev/null
+++ b/pfam_gap_rates/Sulfotransfer_3.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Svf1_C.gap.json b/pfam_gap_rates/Svf1_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c7b0ee549ad38c92796b593b55afdd91cbb58f71
--- /dev/null
+++ b/pfam_gap_rates/Svf1_C.gap.json
@@ -0,0 +1 @@
+{"family": "Svf1_C", "n_seqs": 148, "length": 221, "gap_rates": [0.0945945945945946, 0.0472972972972973, 0.02702702702702703, 0.02702702702702703, 0.02702702702702703, 0.02702702702702703, 0.02702702702702703, 0.02027027027027027, 0.02027027027027027, 0.02027027027027027, 0.02027027027027027, 0.02027027027027027, 0.02027027027027027, 0.02027027027027027, 0.02027027027027027, 0.02027027027027027, 0.02027027027027027, 0.02027027027027027, 0.75, 0.9256756756756757, 0.9459459459459459, 0.9256756756756757, 0.777027027027027, 0.7432432432432432, 0.02027027027027027, 0.02027027027027027, 0.02027027027027027, 0.02027027027027027, 0.02027027027027027, 0.02027027027027027, 0.013513513513513514, 0.013513513513513514, 0.013513513513513514, 0.013513513513513514, 0.013513513513513514, 0.013513513513513514, 0.013513513513513514, 0.02027027027027027, 0.013513513513513514, 0.013513513513513514, 0.013513513513513514, 0.7972972972972973, 0.8040540540540541, 0.8040540540540541, 0.8040540540540541, 0.8040540540540541, 0.7972972972972973, 0.7702702702702703, 0.013513513513513514, 0.013513513513513514, 0.013513513513513514, 0.013513513513513514, 0.013513513513513514, 0.013513513513513514, 0.02027027027027027, 0.02027027027027027, 0.013513513513513514, 0.013513513513513514, 0.013513513513513514, 0.013513513513513514, 0.013513513513513514, 0.013513513513513514, 0.013513513513513514, 0.013513513513513514, 0.013513513513513514, 0.013513513513513514, 0.6959459459459459, 0.7432432432432432, 0.7567567567567568, 0.777027027027027, 0.8040540540540541, 0.8175675675675675, 0.8378378378378378, 0.8581081081081081, 0.8175675675675675, 0.8108108108108109, 0.8040540540540541, 0.7567567567567568, 0.7432432432432432, 0.7364864864864865, 0.6824324324324325, 0.02027027027027027, 0.02702702702702703, 0.013513513513513514, 0.013513513513513514, 0.013513513513513514, 0.013513513513513514, 0.013513513513513514, 0.013513513513513514, 0.013513513513513514, 0.013513513513513514, 0.013513513513513514, 0.013513513513513514, 0.013513513513513514, 0.013513513513513514, 0.12162162162162163, 0.02027027027027027, 0.013513513513513514, 0.013513513513513514, 0.013513513513513514, 0.013513513513513514, 0.013513513513513514, 0.013513513513513514, 0.013513513513513514, 0.013513513513513514, 0.013513513513513514, 0.013513513513513514, 0.013513513513513514, 0.013513513513513514, 0.0472972972972973, 0.05405405405405406, 0.04054054054054054, 0.04054054054054054, 0.06756756756756757, 0.18243243243243243, 0.1554054054054054, 0.12162162162162163, 0.9256756756756757, 0.9459459459459459, 0.9256756756756757, 0.8378378378378378, 0.5337837837837838, 0.49324324324324326, 0.05405405405405406, 0.0472972972972973, 0.04054054054054054, 0.9459459459459459, 0.9459459459459459, 0.9459459459459459, 0.9459459459459459, 0.9459459459459459, 0.9459459459459459, 0.033783783783783786, 0.033783783783783786, 0.033783783783783786, 0.02027027027027027, 0.013513513513513514, 0.013513513513513514, 0.013513513513513514, 0.08108108108108109, 0.7567567567567568, 0.7635135135135135, 0.7635135135135135, 0.9391891891891891, 0.9391891891891891, 0.9256756756756757, 0.7635135135135135, 0.7567567567567568, 0.7567567567567568, 0.013513513513513514, 0.013513513513513514, 0.013513513513513514, 0.013513513513513514, 0.013513513513513514, 0.013513513513513514, 0.013513513513513514, 0.013513513513513514, 0.013513513513513514, 0.013513513513513514, 0.013513513513513514, 0.013513513513513514, 0.013513513513513514, 0.013513513513513514, 0.013513513513513514, 0.013513513513513514, 0.013513513513513514, 0.013513513513513514, 0.013513513513513514, 0.02027027027027027, 0.02027027027027027, 0.02027027027027027, 0.02702702702702703, 0.02027027027027027, 0.0945945945945946, 0.02702702702702703, 0.033783783783783786, 0.02027027027027027, 0.02027027027027027, 0.02027027027027027, 0.02027027027027027, 0.02027027027027027, 0.013513513513513514, 0.013513513513513514, 0.8243243243243243, 0.8918918918918919, 0.7837837837837838, 0.04054054054054054, 0.04054054054054054, 0.02702702702702703, 0.02027027027027027, 0.013513513513513514, 0.02027027027027027, 0.08108108108108109, 0.07432432432432433, 0.05405405405405406, 0.0472972972972973, 0.04054054054054054, 0.05405405405405406, 0.0945945945945946, 0.5675675675675675, 0.8040540540540541, 0.8108108108108109, 0.8648648648648649, 0.8581081081081081, 0.8040540540540541, 0.7702702702702703, 0.12837837837837837, 0.033783783783783786, 0.02702702702702703, 0.02702702702702703, 0.02702702702702703, 0.02702702702702703, 0.02702702702702703, 0.02702702702702703, 0.033783783783783786, 0.033783783783783786, 0.033783783783783786, 0.033783783783783786, 0.033783783783783786, 0.033783783783783786, 0.21621621621621623], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Syntaxin-18_N.gap.json b/pfam_gap_rates/Syntaxin-18_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..60efa8feef3e66973346a740e59d8e9256bf0ad9
--- /dev/null
+++ b/pfam_gap_rates/Syntaxin-18_N.gap.json
@@ -0,0 +1 @@
+{"family": "Syntaxin-18_N", "n_seqs": 189, "length": 125, "gap_rates": [0.42328042328042326, 0.13756613756613756, 0.08465608465608465, 0.07936507936507936, 0.07407407407407407, 0.07407407407407407, 0.07407407407407407, 0.07407407407407407, 0.07407407407407407, 0.07407407407407407, 0.06878306878306878, 0.06878306878306878, 0.06878306878306878, 0.06878306878306878, 0.91005291005291, 0.9365079365079365, 0.9259259259259259, 0.8994708994708994, 0.38095238095238093, 0.9259259259259259, 0.9417989417989417, 0.8624338624338624, 0.6137566137566137, 0.544973544973545, 0.5132275132275133, 0.4497354497354497, 0.2857142857142857, 0.2962962962962963, 0.25925925925925924, 0.2275132275132275, 0.21693121693121692, 0.21693121693121692, 0.2222222222222222, 0.18518518518518517, 0.1693121693121693, 0.12698412698412698, 0.09523809523809523, 0.05291005291005291, 0.047619047619047616, 0.047619047619047616, 0.047619047619047616, 0.042328042328042326, 0.031746031746031744, 0.026455026455026454, 0.021164021164021163, 0.015873015873015872, 0.015873015873015872, 0.010582010582010581, 0.8941798941798942, 0.91005291005291, 0.9259259259259259, 0.9417989417989417, 0.91005291005291, 0.8994708994708994, 0.8888888888888888, 0.010582010582010581, 0.010582010582010581, 0.010582010582010581, 0.010582010582010581, 0.010582010582010581, 0.010582010582010581, 0.010582010582010581, 0.010582010582010581, 0.015873015873015872, 0.015873015873015872, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.005291005291005291, 0.005291005291005291, 0.010582010582010581, 0.010582010582010581, 0.010582010582010581, 0.798941798941799, 0.91005291005291, 0.7248677248677249, 0.015873015873015872, 0.08994708994708994, 0.30158730158730157, 0.26455026455026454, 0.3915343915343915, 0.43386243386243384, 0.5185185185185185, 0.6666666666666666, 0.6984126984126984, 0.7671957671957672, 0.8306878306878307, 0.8518518518518519, 0.8624338624338624, 0.8624338624338624, 0.8994708994708994, 0.9365079365079365, 0.9206349206349206, 0.8835978835978836, 0.8624338624338624, 0.8571428571428571, 0.8412698412698413, 0.783068783068783, 0.7301587301587301, 0.6825396825396826, 0.656084656084656, 0.4444444444444444, 0.41798941798941797, 0.38095238095238093, 0.09523809523809523, 0.17989417989417988, 0.18518518518518517, 0.19047619047619047, 0.19576719576719576, 0.20634920634920634, 0.2328042328042328, 0.2698412698412698, 0.4708994708994709], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/T6SS_Vgr.gap.json b/pfam_gap_rates/T6SS_Vgr.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..be33846e69d7bd4a3e81c676bb361c9c93063864
--- /dev/null
+++ b/pfam_gap_rates/T6SS_Vgr.gap.json
@@ -0,0 +1 @@
+{"family": "T6SS_Vgr", "n_seqs": 161, "length": 115, "gap_rates": [0.6149068322981367, 0.5403726708074534, 0.45962732919254656, 0.19254658385093168, 0.7763975155279503, 0.049689440993788817, 0.037267080745341616, 0.031055900621118012, 0.031055900621118012, 0.031055900621118012, 0.018633540372670808, 0.018633540372670808, 0.018633540372670808, 0.012422360248447204, 0.012422360248447204, 0.012422360248447204, 0.012422360248447204, 0.012422360248447204, 0.012422360248447204, 0.012422360248447204, 0.012422360248447204, 0.012422360248447204, 0.012422360248447204, 0.012422360248447204, 0.012422360248447204, 0.012422360248447204, 0.012422360248447204, 0.012422360248447204, 0.012422360248447204, 0.9316770186335404, 0.012422360248447204, 0.012422360248447204, 0.012422360248447204, 0.012422360248447204, 0.012422360248447204, 0.012422360248447204, 0.006211180124223602, 0.006211180124223602, 0.006211180124223602, 0.006211180124223602, 0.006211180124223602, 0.006211180124223602, 0.006211180124223602, 0.006211180124223602, 0.937888198757764, 0.7577639751552795, 0.2732919254658385, 0.18012422360248448, 0.2670807453416149, 0.2422360248447205, 0.10559006211180125, 0.012422360248447204, 0.006211180124223602, 0.006211180124223602, 0.006211180124223602, 0.006211180124223602, 0.006211180124223602, 0.006211180124223602, 0.006211180124223602, 0.006211180124223602, 0.006211180124223602, 0.006211180124223602, 0.006211180124223602, 0.006211180124223602, 0.006211180124223602, 0.006211180124223602, 0.006211180124223602, 0.006211180124223602, 0.006211180124223602, 0.006211180124223602, 0.006211180124223602, 0.024844720496894408, 0.012422360248447204, 0.006211180124223602, 0.006211180124223602, 0.006211180124223602, 0.006211180124223602, 0.006211180124223602, 0.006211180124223602, 0.006211180124223602, 0.031055900621118012, 0.055900621118012424, 0.8757763975155279, 0.906832298136646, 0.8757763975155279, 0.10559006211180125, 0.055900621118012424, 0.024844720496894408, 0.012422360248447204, 0.012422360248447204, 0.012422360248447204, 0.012422360248447204, 0.012422360248447204, 0.012422360248447204, 0.012422360248447204, 0.012422360248447204, 0.012422360248447204, 0.012422360248447204, 0.012422360248447204, 0.018633540372670808, 0.012422360248447204, 0.012422360248447204, 0.012422360248447204, 0.012422360248447204, 0.012422360248447204, 0.012422360248447204, 0.012422360248447204, 0.012422360248447204, 0.018633540372670808, 0.024844720496894408, 0.024844720496894408, 0.043478260869565216, 0.049689440993788817, 0.11180124223602485, 0.20496894409937888], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/TAtT.gap.json b/pfam_gap_rates/TAtT.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..952d6dccc00d9edd122932206cdfebfb050b53f0
--- /dev/null
+++ b/pfam_gap_rates/TAtT.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/TBCA.gap.json b/pfam_gap_rates/TBCA.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..0e06c8ab0e58221ca44220c4fd3a0d07618f4ea9
--- /dev/null
+++ b/pfam_gap_rates/TBCA.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/TBCC_N.gap.json b/pfam_gap_rates/TBCC_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..2538b59ac32e424582c51f69eac689bee3ed1450
--- /dev/null
+++ b/pfam_gap_rates/TBCC_N.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/TEA.gap.json b/pfam_gap_rates/TEA.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..aa2c89286203c633e3c6bf46f81d8fe66cb901f0
--- /dev/null
+++ b/pfam_gap_rates/TEA.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/TFIID_NTD2.gap.json b/pfam_gap_rates/TFIID_NTD2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..7c9b28a82a2764e5648655d9297a64217bf9ec25
--- /dev/null
+++ b/pfam_gap_rates/TFIID_NTD2.gap.json
@@ -0,0 +1 @@
+{"family": "TFIID_NTD2", "n_seqs": 370, "length": 135, "gap_rates": [0.8297297297297297, 0.6054054054054054, 0.35135135135135137, 0.2594594594594595, 0.1918918918918919, 0.15135135135135136, 0.14054054054054055, 0.11621621621621622, 0.0918918918918919, 0.08648648648648649, 0.08648648648648649, 0.08108108108108109, 0.08108108108108109, 0.08108108108108109, 0.07837837837837838, 0.07567567567567568, 0.07567567567567568, 0.07567567567567568, 0.07567567567567568, 0.07567567567567568, 0.07027027027027027, 0.07297297297297298, 0.07297297297297298, 0.07297297297297298, 0.07297297297297298, 0.06756756756756757, 0.06486486486486487, 0.06486486486486487, 0.06756756756756757, 0.06486486486486487, 0.06486486486486487, 0.05945945945945946, 0.05675675675675676, 0.05405405405405406, 0.05675675675675676, 0.05675675675675676, 0.05675675675675676, 0.05675675675675676, 0.05675675675675676, 0.05405405405405406, 0.05405405405405406, 0.05405405405405406, 0.05405405405405406, 0.04864864864864865, 0.04864864864864865, 0.04594594594594595, 0.04594594594594595, 0.043243243243243246, 0.08108108108108109, 0.04594594594594595, 0.04594594594594595, 0.043243243243243246, 0.03783783783783784, 0.04054054054054054, 0.04054054054054054, 0.04054054054054054, 0.03783783783783784, 0.03783783783783784, 0.043243243243243246, 0.043243243243243246, 0.043243243243243246, 0.04594594594594595, 0.051351351351351354, 0.05405405405405406, 0.927027027027027, 0.8972972972972973, 0.051351351351351354, 0.05675675675675676, 0.051351351351351354, 0.04594594594594595, 0.04054054054054054, 0.04864864864864865, 0.043243243243243246, 0.043243243243243246, 0.043243243243243246, 0.04864864864864865, 0.04864864864864865, 0.04864864864864865, 0.04594594594594595, 0.04594594594594595, 0.04594594594594595, 0.04864864864864865, 0.04864864864864865, 0.04864864864864865, 0.04864864864864865, 0.05945945945945946, 0.05405405405405406, 0.05405405405405406, 0.051351351351351354, 0.05405405405405406, 0.062162162162162166, 0.05405405405405406, 0.05675675675675676, 0.05675675675675676, 0.05675675675675676, 0.062162162162162166, 0.062162162162162166, 0.05945945945945946, 0.062162162162162166, 0.062162162162162166, 0.062162162162162166, 0.062162162162162166, 0.062162162162162166, 0.062162162162162166, 0.062162162162162166, 0.05945945945945946, 0.06756756756756757, 0.06756756756756757, 0.07027027027027027, 0.07027027027027027, 0.07297297297297298, 0.07297297297297298, 0.08108108108108109, 0.08648648648648649, 0.0891891891891892, 0.0918918918918919, 0.0972972972972973, 0.11621621621621622, 0.1918918918918919, 0.20270270270270271, 0.21081081081081082, 0.21891891891891893, 0.7621621621621621, 0.7648648648648648, 0.7486486486486487, 0.22702702702702704, 0.21891891891891893, 0.21621621621621623, 0.21621621621621623, 0.21621621621621623, 0.21621621621621623, 0.21891891891891893, 0.23783783783783785, 0.27837837837837837, 0.4648648648648649], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/TF_AP-2.gap.json b/pfam_gap_rates/TF_AP-2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..164a5d2e07b0ccc2523ee5d78fc7f305b7620dd7
--- /dev/null
+++ b/pfam_gap_rates/TF_AP-2.gap.json
@@ -0,0 +1 @@
+{"family": "TF_AP-2", "n_seqs": 268, "length": 199, "gap_rates": [0.2574626865671642, 0.23880597014925373, 0.23507462686567165, 0.22388059701492538, 0.21641791044776118, 0.2126865671641791, 0.2126865671641791, 0.2126865671641791, 0.2126865671641791, 0.2126865671641791, 0.25, 0.22014925373134328, 0.19776119402985073, 0.20149253731343283, 0.1865671641791045, 0.1828358208955224, 0.1791044776119403, 0.17537313432835822, 0.17164179104477612, 0.17164179104477612, 0.17164179104477612, 0.17164179104477612, 0.17164179104477612, 0.16417910447761194, 0.16417910447761194, 0.17164179104477612, 0.16791044776119404, 0.16791044776119404, 0.17164179104477612, 0.17164179104477612, 0.17164179104477612, 0.17164179104477612, 0.17537313432835822, 0.17537313432835822, 0.17537313432835822, 0.17537313432835822, 0.17537313432835822, 0.17537313432835822, 0.17164179104477612, 0.17164179104477612, 0.17164179104477612, 0.16791044776119404, 0.16791044776119404, 0.16791044776119404, 0.14925373134328357, 0.14925373134328357, 0.14925373134328357, 0.15298507462686567, 0.16791044776119404, 0.16791044776119404, 0.16044776119402984, 0.16417910447761194, 0.16417910447761194, 0.16417910447761194, 0.16044776119402984, 0.16044776119402984, 0.16044776119402984, 0.16044776119402984, 0.15671641791044777, 0.15671641791044777, 0.15671641791044777, 0.15671641791044777, 0.15671641791044777, 0.15671641791044777, 0.15671641791044777, 0.15671641791044777, 0.15671641791044777, 0.15671641791044777, 0.16791044776119404, 0.16417910447761194, 0.15671641791044777, 0.15298507462686567, 0.14925373134328357, 0.14925373134328357, 0.15671641791044777, 0.14925373134328357, 0.14925373134328357, 0.14925373134328357, 0.14925373134328357, 0.1455223880597015, 0.13805970149253732, 0.13432835820895522, 0.12313432835820895, 0.11940298507462686, 0.11194029850746269, 0.11940298507462686, 0.12313432835820895, 0.12313432835820895, 0.12686567164179105, 0.13059701492537312, 0.13059701492537312, 0.13432835820895522, 0.13432835820895522, 0.13805970149253732, 0.13805970149253732, 0.13805970149253732, 0.13805970149253732, 0.13805970149253732, 0.13805970149253732, 0.13805970149253732, 0.16044776119402984, 0.1417910447761194, 0.1417910447761194, 0.1417910447761194, 0.1417910447761194, 0.1455223880597015, 0.1455223880597015, 0.14925373134328357, 0.1417910447761194, 0.1417910447761194, 0.15298507462686567, 0.15298507462686567, 0.15671641791044777, 0.16044776119402984, 0.15671641791044777, 0.15671641791044777, 0.6529850746268657, 0.8656716417910447, 0.26492537313432835, 0.19776119402985073, 0.19402985074626866, 0.9365671641791045, 0.17164179104477612, 0.16417910447761194, 0.16417910447761194, 0.17537313432835822, 0.17164179104477612, 0.17164179104477612, 0.17164179104477612, 0.16417910447761194, 0.1828358208955224, 0.1791044776119403, 0.1791044776119403, 0.17537313432835822, 0.1791044776119403, 0.19776119402985073, 0.19402985074626866, 0.19402985074626866, 0.19776119402985073, 0.19402985074626866, 0.19776119402985073, 0.20149253731343283, 0.19029850746268656, 0.19029850746268656, 0.1865671641791045, 0.1865671641791045, 0.19029850746268656, 0.2126865671641791, 0.2126865671641791, 0.21641791044776118, 0.208955223880597, 0.7947761194029851, 0.25, 0.23134328358208955, 0.23134328358208955, 0.22388059701492538, 0.39552238805970147, 0.23880597014925373, 0.2126865671641791, 0.21641791044776118, 0.2126865671641791, 0.19776119402985073, 0.20149253731343283, 0.19776119402985073, 0.23134328358208955, 0.22388059701492538, 0.19402985074626866, 0.1865671641791045, 0.1865671641791045, 0.1865671641791045, 0.1828358208955224, 0.1791044776119403, 0.1791044776119403, 0.1828358208955224, 0.1828358208955224, 0.1828358208955224, 0.19029850746268656, 0.19402985074626866, 0.19402985074626866, 0.19402985074626866, 0.19402985074626866, 0.19402985074626866, 0.19402985074626866, 0.19402985074626866, 0.19402985074626866, 0.19402985074626866, 0.19402985074626866, 0.19776119402985073, 0.19776119402985073, 0.20149253731343283, 0.20522388059701493, 0.20522388059701493, 0.21641791044776118, 0.22761194029850745, 0.22761194029850745, 0.23880597014925373, 0.26865671641791045, 0.3619402985074627, 0.7014925373134329], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/THDPS_M.gap.json b/pfam_gap_rates/THDPS_M.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ca772dcb8b84539c127df684592d54f00ba2a406
--- /dev/null
+++ b/pfam_gap_rates/THDPS_M.gap.json
@@ -0,0 +1 @@
+{"family": "THDPS_M", "n_seqs": 308, "length": 42, "gap_rates": [0.00974025974025974, 0.006493506493506494, 0.003246753246753247, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.9253246753246753, 0.0, 0.0, 0.42207792207792205, 0.08441558441558442, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.01948051948051948], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/TILa.gap.json b/pfam_gap_rates/TILa.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d4b3a992e7ca429b3612d4840b847d5aeaa13d90
--- /dev/null
+++ b/pfam_gap_rates/TILa.gap.json
@@ -0,0 +1 @@
+{"family": "TILa", "n_seqs": 424, "length": 60, "gap_rates": [0.11556603773584906, 0.0330188679245283, 0.054245283018867926, 0.6768867924528302, 0.018867924528301886, 0.018867924528301886, 0.014150943396226415, 0.01179245283018868, 0.007075471698113208, 0.007075471698113208, 0.007075471698113208, 0.0047169811320754715, 0.0023584905660377358, 0.0023584905660377358, 0.0047169811320754715, 0.9245283018867925, 0.0, 0.0, 0.0023584905660377358, 0.0330188679245283, 0.0047169811320754715, 0.7240566037735849, 0.0, 0.0, 0.0, 0.0047169811320754715, 0.0, 0.0, 0.0, 0.8042452830188679, 0.21462264150943397, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.007075471698113208, 0.007075471698113208, 0.0047169811320754715, 0.01179245283018868, 0.007075471698113208, 0.009433962264150943, 0.01179245283018868, 0.014150943396226415, 0.8419811320754716, 0.018867924528301886, 0.018867924528301886, 0.02122641509433962, 0.025943396226415096, 0.030660377358490566, 0.0330188679245283, 0.5589622641509434], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/TM2.gap.json b/pfam_gap_rates/TM2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..2c336a09126403bb26702871551ba7fb10d84834
--- /dev/null
+++ b/pfam_gap_rates/TM2.gap.json
@@ -0,0 +1 @@
+{"family": "TM2", "n_seqs": 1216, "length": 58, "gap_rates": [0.9416118421052632, 0.5328947368421053, 0.2738486842105263, 0.18667763157894737, 0.12006578947368421, 0.09786184210526316, 0.06907894736842106, 0.03782894736842105, 0.022203947368421052, 0.018914473684210526, 0.013980263157894737, 0.012335526315789474, 0.009868421052631578, 0.9424342105263158, 0.9333881578947368, 0.07401315789473684, 0.013157894736842105, 0.011513157894736841, 0.011513157894736841, 0.003289473684210526, 0.0008223684210526315, 0.0, 0.0, 0.0, 0.0, 0.001644736842105263, 0.001644736842105263, 0.001644736842105263, 0.003289473684210526, 0.001644736842105263, 0.001644736842105263, 0.004934210526315789, 0.004111842105263158, 0.004934210526315789, 0.004934210526315789, 0.005756578947368421, 0.005756578947368421, 0.007401315789473684, 0.007401315789473684, 0.007401315789473684, 0.6595394736842105, 0.8667763157894737, 0.9350328947368421, 0.9449013157894737, 0.8856907894736842, 0.7129934210526315, 0.018092105263157895, 0.03042763157894737, 0.032072368421052634, 0.03453947368421053, 0.027138157894736843, 0.046052631578947366, 0.06085526315789474, 0.06990131578947369, 0.08881578947368421, 0.1118421052631579, 0.14720394736842105, 0.3569078947368421], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/TM231.gap.json b/pfam_gap_rates/TM231.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..fbf50cd612762aa71e3265dc1d99b57a59fe503d
--- /dev/null
+++ b/pfam_gap_rates/TM231.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/TMC.gap.json b/pfam_gap_rates/TMC.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..57619e4996a1db3af92cd2925d18e7580f477c23
--- /dev/null
+++ b/pfam_gap_rates/TMC.gap.json
@@ -0,0 +1 @@
+{"family": "TMC", "n_seqs": 305, "length": 116, "gap_rates": [0.12131147540983607, 0.1180327868852459, 0.1180327868852459, 0.1180327868852459, 0.11147540983606558, 0.10819672131147541, 0.10819672131147541, 0.09508196721311475, 0.09180327868852459, 0.08524590163934426, 0.08524590163934426, 0.08196721311475409, 0.08196721311475409, 0.08196721311475409, 0.08196721311475409, 0.07540983606557378, 0.07540983606557378, 0.07213114754098361, 0.07213114754098361, 0.07213114754098361, 0.06885245901639345, 0.06557377049180328, 0.06557377049180328, 0.06885245901639345, 0.06229508196721312, 0.06229508196721312, 0.06229508196721312, 0.06885245901639345, 0.06557377049180328, 0.06557377049180328, 0.06557377049180328, 0.06557377049180328, 0.06885245901639345, 0.06885245901639345, 0.07868852459016394, 0.07868852459016394, 0.08196721311475409, 0.09180327868852459, 0.28852459016393445, 0.2786885245901639, 0.25901639344262295, 0.25901639344262295, 0.6, 0.6196721311475409, 0.6196721311475409, 0.5672131147540984, 0.13442622950819672, 0.11147540983606558, 0.10819672131147541, 0.10163934426229508, 0.10491803278688525, 0.09836065573770492, 0.6295081967213115, 0.08524590163934426, 0.08196721311475409, 0.07868852459016394, 0.07868852459016394, 0.07868852459016394, 0.07868852459016394, 0.07868852459016394, 0.07868852459016394, 0.07868852459016394, 0.07868852459016394, 0.07868852459016394, 0.07868852459016394, 0.07868852459016394, 0.07868852459016394, 0.07868852459016394, 0.07868852459016394, 0.07868852459016394, 0.07213114754098361, 0.06885245901639345, 0.06557377049180328, 0.07213114754098361, 0.06557377049180328, 0.07540983606557378, 0.07540983606557378, 0.07540983606557378, 0.07868852459016394, 0.07540983606557378, 0.07540983606557378, 0.07540983606557378, 0.07540983606557378, 0.07540983606557378, 0.07540983606557378, 0.07540983606557378, 0.07540983606557378, 0.07540983606557378, 0.07540983606557378, 0.07540983606557378, 0.07540983606557378, 0.08196721311475409, 0.08196721311475409, 0.08196721311475409, 0.08196721311475409, 0.08196721311475409, 0.08524590163934426, 0.08852459016393442, 0.08852459016393442, 0.08852459016393442, 0.08852459016393442, 0.09180327868852459, 0.09180327868852459, 0.10163934426229508, 0.09836065573770492, 0.09836065573770492, 0.09836065573770492, 0.09836065573770492, 0.09836065573770492, 0.10491803278688525, 0.11147540983606558, 0.12459016393442623, 0.13114754098360656, 0.14754098360655737, 0.16065573770491803, 0.2098360655737705], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/TMEM131_like.gap.json b/pfam_gap_rates/TMEM131_like.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..fcc5bce4c0eb46c00ba8eb872771226aec2f8af9
--- /dev/null
+++ b/pfam_gap_rates/TMEM131_like.gap.json
@@ -0,0 +1 @@
+{"family": "TMEM131_like", "n_seqs": 112, "length": 84, "gap_rates": [0.44642857142857145, 0.1875, 0.125, 0.11607142857142858, 0.11607142857142858, 0.09821428571428571, 0.09821428571428571, 0.09821428571428571, 0.09821428571428571, 0.09821428571428571, 0.09821428571428571, 0.08035714285714286, 0.05357142857142857, 0.03571428571428571, 0.03571428571428571, 0.03571428571428571, 0.03571428571428571, 0.03571428571428571, 0.03571428571428571, 0.03571428571428571, 0.017857142857142856, 0.017857142857142856, 0.017857142857142856, 0.017857142857142856, 0.017857142857142856, 0.017857142857142856, 0.017857142857142856, 0.0625, 0.017857142857142856, 0.026785714285714284, 0.03571428571428571, 0.15178571428571427, 0.017857142857142856, 0.017857142857142856, 0.017857142857142856, 0.017857142857142856, 0.017857142857142856, 0.026785714285714284, 0.026785714285714284, 0.017857142857142856, 0.017857142857142856, 0.017857142857142856, 0.017857142857142856, 0.017857142857142856, 0.017857142857142856, 0.017857142857142856, 0.017857142857142856, 0.017857142857142856, 0.03571428571428571, 0.017857142857142856, 0.026785714285714284, 0.017857142857142856, 0.008928571428571428, 0.008928571428571428, 0.017857142857142856, 0.03571428571428571, 0.03571428571428571, 0.03571428571428571, 0.026785714285714284, 0.026785714285714284, 0.026785714285714284, 0.026785714285714284, 0.026785714285714284, 0.026785714285714284, 0.026785714285714284, 0.017857142857142856, 0.017857142857142856, 0.017857142857142856, 0.017857142857142856, 0.026785714285714284, 0.026785714285714284, 0.026785714285714284, 0.026785714285714284, 0.026785714285714284, 0.03571428571428571, 0.03571428571428571, 0.044642857142857144, 0.044642857142857144, 0.044642857142857144, 0.044642857142857144, 0.05357142857142857, 0.05357142857142857, 0.08928571428571429, 0.22321428571428573], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/TMEM214.gap.json b/pfam_gap_rates/TMEM214.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..26f45be2abb0c6523f1fb813c89ba4e1b03f7e02
--- /dev/null
+++ b/pfam_gap_rates/TMEM214.gap.json
@@ -0,0 +1 @@
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"gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/TMP-TENI.gap.json b/pfam_gap_rates/TMP-TENI.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e99f775d4eca16801310128a43491cd9f563360d
--- /dev/null
+++ b/pfam_gap_rates/TMP-TENI.gap.json
@@ -0,0 +1 @@
+{"family": "TMP-TENI", "n_seqs": 2361, "length": 197, "gap_rates": [0.44387971198644643, 0.3146971622193986, 0.2795425667090216, 0.2626005929690809, 0.25878864887759423, 0.2388818297331639, 0.26005929690808977, 0.2558238034731046, 0.2558238034731046, 0.26429479034307496, 0.9275730622617535, 0.8619229140194833, 0.5578144853875476, 0.3269800931808556, 0.24947056332062686, 0.2215163066497247, 0.12198221092757307, 0.1012282930961457, 0.09148665819567979, 0.084286319356205, 0.07920372723422278, 0.07878017789072427, 0.0770859805167302, 0.07327403642524354, 0.07369758576874205, 0.07157983905124947, 0.07115628970775095, 0.0698856416772554, 0.9119017365523083, 0.06903854299025837, 0.060991105463786534, 0.058873358746293944, 0.055484963998305804, 0.05421431596781025, 0.05252011859381618, 0.05167301990681914, 0.051249470563320625, 0.05252011859381618, 0.916560779330792, 0.9250317662007624, 0.9119017365523083, 0.05252011859381618, 0.0817450232952139, 0.0745446844557391, 0.055484963998305804, 0.05040237187632359, 0.04913172384582804, 0.048284625158831, 0.04913172384582804, 0.04955527318932656, 0.048284625158831, 0.04955527318932656, 0.049978822532825075, 0.052096569250317665, 0.05252011859381618, 0.053367217280813214, 0.052096569250317665, 0.049978822532825075, 0.047861075815332485, 0.08682761541719611, 0.05717916137229987, 0.05802626005929691, 0.04616687844133842, 0.046590427784836935, 0.03642524354087251, 0.03430749682337993, 0.0338839474798814, 0.03430749682337993, 0.03473104616687844, 0.03515459551037696, 0.03515459551037696, 0.03642524354087251, 0.03727234222786955, 0.03811944091486658, 0.03811944091486658, 0.03981363828886065, 0.038966539601863616, 0.037695891571368066, 0.035578144853875476, 0.0338839474798814, 0.06056755612028801, 0.03303684879288437, 0.03261329944938585, 0.03261329944938585, 0.033460398136382886, 0.03473104616687844, 0.03600169419737399, 0.03727234222786955, 0.04150783566285472, 0.03981363828886065, 0.04277848369335027, 0.04150783566285472, 0.038966539601863616, 0.037695891571368066, 0.03811944091486658, 0.05082592121982211, 0.05040237187632359, 0.11944091486658195, 0.07750952986022872, 0.11435832274459974, 0.13214739517153748, 0.07878017789072427, 0.05633206268530284, 0.03600169419737399, 0.03473104616687844, 0.031342651418890304, 0.029224904701397714, 0.026683608640406607, 0.024989411266412537, 0.02456586192291402, 0.0241423125794155, 0.02456586192291402, 0.025412960609911054, 0.02583650995340957, 0.8343922066920796, 0.02583650995340957, 0.026683608640406607, 0.02626005929690809, 0.025412960609911054, 0.02626005929690809, 0.07073274036425244, 0.03473104616687844, 0.02626005929690809, 0.022024565861922914, 0.022024565861922914, 0.021601016518424398, 0.022024565861922914, 0.02244811520542143, 0.023295213892418468, 0.024989411266412537, 0.02626005929690809, 0.027530707327403644, 0.051249470563320625, 0.03303684879288437, 0.03515459551037696, 0.0338839474798814, 0.03600169419737399, 0.03430749682337993, 0.03176620076238882, 0.03981363828886065, 0.04701397712833545, 0.5857687420584498, 0.056755612028801354, 0.03600169419737399, 0.0338839474798814, 0.03303684879288437, 0.0338839474798814, 0.029224904701397714, 0.030919102075391783, 0.03261329944938585, 0.03303684879288437, 0.03303684879288437, 0.0338839474798814, 0.033460398136382886, 0.03430749682337993, 0.046590427784836935, 0.042354934349851756, 0.0385429902583651, 0.8343922066920796, 0.8945362134688691, 0.8970775095298602, 0.8720880982634477, 0.6950444726810674, 0.033460398136382886, 0.03176620076238882, 0.030495552731893267, 0.030919102075391783, 0.031342651418890304, 0.031342651418890304, 0.03176620076238882, 0.037695891571368066, 0.0338839474798814, 0.03261329944938585, 0.03303684879288437, 0.03473104616687844, 0.03473104616687844, 0.03642524354087251, 0.03939008894536213, 0.044472681067344345, 0.046590427784836935, 0.0529436679373147, 0.9445150360016942, 0.9449385853451927, 0.938585345192715, 0.07200338839474799, 0.06903854299025837, 0.06607369758576874, 0.0677678949597628, 0.06607369758576874, 0.06565014824227022, 0.06692079627276577, 0.07115628970775095, 0.07623888182973317, 0.09318085556967387, 0.12706480304955528, 0.18509106310885218, 0.36298178737822956], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/TMPIT.gap.json b/pfam_gap_rates/TMPIT.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d73253a068c878d5ba0fa1844b53c6b291da506e
--- /dev/null
+++ b/pfam_gap_rates/TMPIT.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/TPR_17.gap.json b/pfam_gap_rates/TPR_17.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..1ed88c8c754b22aa7ebc0e3a81b8d807bc7be0dc
--- /dev/null
+++ b/pfam_gap_rates/TPR_17.gap.json
@@ -0,0 +1 @@
+{"family": "TPR_17", "n_seqs": 1009, "length": 41, "gap_rates": [0.36967294350842417, 0.09217046580773043, 0.04162537165510406, 0.026759167492566897, 0.011892963330029732, 0.006937561942517344, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0019821605550049554, 0.002973240832507433, 0.003964321110009911, 0.008919722497522299, 0.6382556987115956, 0.6392467789890981, 0.645193260654113, 0.6541129831516352, 0.6412289395441031, 0.6392467789890981, 0.6134786917740337, 0.02081268582755203, 0.03766105054509415, 0.04360753221010902, 0.05252725470763132, 0.06442021803766106, 0.07928642220019821, 0.10307234886025768, 0.12388503468780972, 0.2358771060455897, 0.4786917740336967], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/TPR_3.gap.json b/pfam_gap_rates/TPR_3.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..7ebec04bf55f43241c6157d9437798b4a6ea9278
--- /dev/null
+++ b/pfam_gap_rates/TPR_3.gap.json
@@ -0,0 +1 @@
+{"family": "TPR_3", "n_seqs": 155, "length": 36, "gap_rates": [0.7225806451612903, 0.5419354838709678, 0.4774193548387097, 0.3741935483870968, 0.2903225806451613, 0.1870967741935484, 0.14838709677419354, 0.03870967741935484, 0.03870967741935484, 0.03870967741935484, 0.025806451612903226, 0.012903225806451613, 0.0064516129032258064, 0.0064516129032258064, 0.0, 0.0, 0.0064516129032258064, 0.0064516129032258064, 0.0064516129032258064, 0.0064516129032258064, 0.0064516129032258064, 0.01935483870967742, 0.01935483870967742, 0.6, 0.6193548387096774, 0.45161290322580644, 0.45161290322580644, 0.27741935483870966, 0.2903225806451613, 0.3419354838709677, 0.3935483870967742, 0.432258064516129, 0.4645161290322581, 0.535483870967742, 0.6387096774193548, 0.7032258064516129], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/TRAM.gap.json b/pfam_gap_rates/TRAM.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..348dbcb1cb579e261fae2937d24dc2e5ea1e2658
--- /dev/null
+++ b/pfam_gap_rates/TRAM.gap.json
@@ -0,0 +1 @@
+{"family": "TRAM", "n_seqs": 3873, "length": 73, "gap_rates": [0.855151045701007, 0.5822359927704621, 0.3854892847921508, 0.26491092176607284, 0.20784921249677252, 0.16421378776142526, 0.13555383423702555, 0.11257423186160599, 0.08288148721920992, 0.057578104828298476, 0.042860831396849985, 0.029176349083397883, 0.026077975729408728, 0.022205009036922282, 0.019623031241931318, 0.017299251226439452, 0.6392977020397624, 0.44848954298993027, 0.054221533694810226, 0.007229537825974697, 0.003356571133488252, 0.003356571133488252, 0.0028401755744900596, 0.0023237800154918666, 0.0010327911179963851, 0.000774593338497289, 0.0010327911179963851, 0.0010327911179963851, 0.29692744642396074, 0.890265943712884, 0.895429899302866, 0.8974954815388587, 0.8920733281693778, 0.8814872192099148, 0.0012909888974954814, 0.0010327911179963851, 0.0002581977794990963, 0.0005163955589981926, 0.0002581977794990963, 0.0002581977794990963, 0.000774593338497289, 0.000774593338497289, 0.08313968499870901, 0.8252001032791118, 0.9375161373612187, 0.8812290214304157, 0.8055770720371804, 0.06248386263878131, 0.020397624580428608, 0.5086496256132197, 0.788277820810741, 0.47250193648334626, 0.0020655822359927703, 0.0018073844564936742, 0.0020655822359927703, 0.0023237800154918666, 0.0028401755744900596, 0.006971340046475601, 0.008520526723470178, 0.009811515620965659, 0.011618900077459334, 0.018073844564936742, 0.024270591272915053, 0.05680351148980119, 0.06790601600826233, 0.07823392718822618, 0.08701265169119546, 0.12212754970307256, 0.12677510973405628, 0.12935708752904726, 0.1745416989413891, 0.2927962819519752, 0.5755228505034856], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/TRAP_beta.gap.json b/pfam_gap_rates/TRAP_beta.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..205b8c9a426b66bd1e22794db4fb258424d42cf5
--- /dev/null
+++ b/pfam_gap_rates/TRAP_beta.gap.json
@@ -0,0 +1 @@
+{"family": "TRAP_beta", "n_seqs": 179, "length": 200, "gap_rates": [0.9050279329608939, 0.6256983240223464, 0.4860335195530726, 0.4301675977653631, 0.3687150837988827, 0.3407821229050279, 0.3463687150837989, 0.3407821229050279, 0.27932960893854747, 0.2737430167597765, 0.2569832402234637, 0.24581005586592178, 0.2346368715083799, 0.2346368715083799, 0.18994413407821228, 0.8435754189944135, 0.88268156424581, 0.9162011173184358, 0.8715083798882681, 0.8212290502793296, 0.16201117318435754, 0.13966480446927373, 0.12849162011173185, 0.12849162011173185, 0.12849162011173185, 0.12849162011173185, 0.11731843575418995, 0.11173184357541899, 0.11173184357541899, 0.11173184357541899, 0.10614525139664804, 0.11173184357541899, 0.11173184357541899, 0.11173184357541899, 0.11173184357541899, 0.11173184357541899, 0.1340782122905028, 0.1005586592178771, 0.1005586592178771, 0.07262569832402235, 0.07262569832402235, 0.07262569832402235, 0.07262569832402235, 0.07262569832402235, 0.061452513966480445, 0.061452513966480445, 0.061452513966480445, 0.061452513966480445, 0.061452513966480445, 0.061452513966480445, 0.0670391061452514, 0.0670391061452514, 0.07262569832402235, 0.061452513966480445, 0.0670391061452514, 0.0670391061452514, 0.0670391061452514, 0.0670391061452514, 0.07262569832402235, 0.0670391061452514, 0.0670391061452514, 0.0670391061452514, 0.8659217877094972, 0.1564245810055866, 0.12849162011173185, 0.12290502793296089, 0.12290502793296089, 0.11731843575418995, 0.12849162011173185, 0.12290502793296089, 0.12849162011173185, 0.09497206703910614, 0.07262569832402235, 0.0782122905027933, 0.07262569832402235, 0.0782122905027933, 0.9162011173184358, 0.0893854748603352, 0.07262569832402235, 0.08379888268156424, 0.0670391061452514, 0.07262569832402235, 0.0782122905027933, 0.07262569832402235, 0.07262569832402235, 0.07262569832402235, 0.07262569832402235, 0.0670391061452514, 0.0670391061452514, 0.0670391061452514, 0.0670391061452514, 0.0670391061452514, 0.0670391061452514, 0.0670391061452514, 0.0670391061452514, 0.0670391061452514, 0.0670391061452514, 0.0670391061452514, 0.061452513966480445, 0.061452513966480445, 0.061452513966480445, 0.061452513966480445, 0.061452513966480445, 0.061452513966480445, 0.061452513966480445, 0.061452513966480445, 0.061452513966480445, 0.061452513966480445, 0.061452513966480445, 0.061452513966480445, 0.061452513966480445, 0.061452513966480445, 0.061452513966480445, 0.061452513966480445, 0.061452513966480445, 0.9329608938547486, 0.9497206703910615, 0.9497206703910615, 0.9441340782122905, 0.9273743016759777, 0.10614525139664804, 0.11173184357541899, 0.1005586592178771, 0.0893854748603352, 0.09497206703910614, 0.5586592178770949, 0.12290502793296089, 0.12849162011173185, 0.12849162011173185, 0.12290502793296089, 0.11731843575418995, 0.11731843575418995, 0.11731843575418995, 0.11731843575418995, 0.9497206703910615, 0.9217877094972067, 0.11731843575418995, 0.11173184357541899, 0.11173184357541899, 0.11173184357541899, 0.12290502793296089, 0.12849162011173185, 0.12849162011173185, 0.1340782122905028, 0.1340782122905028, 0.1452513966480447, 0.15083798882681565, 0.15083798882681565, 0.15083798882681565, 0.1452513966480447, 0.15083798882681565, 0.15083798882681565, 0.15083798882681565, 0.15083798882681565, 0.15083798882681565, 0.16201117318435754, 0.1564245810055866, 0.7653631284916201, 0.9162011173184358, 0.9329608938547486, 0.9329608938547486, 0.9497206703910615, 0.9441340782122905, 0.9329608938547486, 0.9329608938547486, 0.770949720670391, 0.7262569832402235, 0.1787709497206704, 0.18994413407821228, 0.1787709497206704, 0.1787709497206704, 0.18435754189944134, 0.18994413407821228, 0.2011173184357542, 0.19553072625698323, 0.2011173184357542, 0.19553072625698323, 0.19553072625698323, 0.19553072625698323, 0.2011173184357542, 0.20670391061452514, 0.20670391061452514, 0.2011173184357542, 0.2011173184357542, 0.2011173184357542, 0.2011173184357542, 0.20670391061452514, 0.21787709497206703, 0.2346368715083799, 0.24022346368715083, 0.25139664804469275, 0.27932960893854747, 0.29608938547486036, 0.3128491620111732, 0.33519553072625696, 0.37988826815642457, 0.4022346368715084, 0.4301675977653631, 0.5363128491620112, 0.770949720670391], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/TSC22.gap.json b/pfam_gap_rates/TSC22.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b230e9390648b46d35c8beebc692d172540cc876
--- /dev/null
+++ b/pfam_gap_rates/TSC22.gap.json
@@ -0,0 +1 @@
+{"family": "TSC22", "n_seqs": 153, "length": 57, "gap_rates": [0.1437908496732026, 0.032679738562091505, 0.032679738562091505, 0.026143790849673203, 0.026143790849673203, 0.0196078431372549, 0.0196078431372549, 0.0196078431372549, 0.013071895424836602, 0.013071895424836602, 0.013071895424836602, 0.006535947712418301, 0.006535947712418301, 0.006535947712418301, 0.006535947712418301, 0.006535947712418301, 0.0, 0.0, 0.0, 0.0, 0.006535947712418301, 0.006535947712418301, 0.006535947712418301, 0.006535947712418301, 0.006535947712418301, 0.006535947712418301, 0.006535947712418301, 0.006535947712418301, 0.013071895424836602, 0.013071895424836602, 0.032679738562091505, 0.032679738562091505, 0.032679738562091505, 0.032679738562091505, 0.0392156862745098, 0.0457516339869281, 0.0457516339869281, 0.0457516339869281, 0.0457516339869281, 0.0457516339869281, 0.0457516339869281, 0.05228758169934641, 0.058823529411764705, 0.058823529411764705, 0.0718954248366013, 0.10457516339869281, 0.10457516339869281, 0.10457516339869281, 0.11764705882352941, 0.11764705882352941, 0.11764705882352941, 0.11764705882352941, 0.1437908496732026, 0.21568627450980393, 0.39215686274509803, 0.6339869281045751, 0.8496732026143791], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/TTC5_OB.gap.json b/pfam_gap_rates/TTC5_OB.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f96759be343aec2b588a6348e32abaae6acde2f3
--- /dev/null
+++ b/pfam_gap_rates/TTC5_OB.gap.json
@@ -0,0 +1 @@
+{"family": "TTC5_OB", "n_seqs": 116, "length": 151, "gap_rates": [0.8448275862068966, 0.28448275862068967, 0.25, 0.1810344827586207, 0.13793103448275862, 0.10344827586206896, 0.09482758620689655, 0.09482758620689655, 0.09482758620689655, 0.08620689655172414, 0.08620689655172414, 0.07758620689655173, 0.07758620689655173, 0.07758620689655173, 0.07758620689655173, 0.07758620689655173, 0.07758620689655173, 0.07758620689655173, 0.08620689655172414, 0.08620689655172414, 0.07758620689655173, 0.06896551724137931, 0.06896551724137931, 0.06896551724137931, 0.07758620689655173, 0.07758620689655173, 0.06896551724137931, 0.06896551724137931, 0.06896551724137931, 0.06896551724137931, 0.06896551724137931, 0.07758620689655173, 0.0603448275862069, 0.0603448275862069, 0.06896551724137931, 0.08620689655172414, 0.0603448275862069, 0.0603448275862069, 0.0603448275862069, 0.05172413793103448, 0.05172413793103448, 0.05172413793103448, 0.05172413793103448, 0.04310344827586207, 0.04310344827586207, 0.04310344827586207, 0.034482758620689655, 0.034482758620689655, 0.034482758620689655, 0.034482758620689655, 0.034482758620689655, 0.02586206896551724, 0.034482758620689655, 0.02586206896551724, 0.04310344827586207, 0.3017241379310345, 0.02586206896551724, 0.034482758620689655, 0.034482758620689655, 0.04310344827586207, 0.04310344827586207, 0.04310344827586207, 0.04310344827586207, 0.04310344827586207, 0.04310344827586207, 0.04310344827586207, 0.04310344827586207, 0.04310344827586207, 0.04310344827586207, 0.04310344827586207, 0.04310344827586207, 0.04310344827586207, 0.04310344827586207, 0.04310344827586207, 0.04310344827586207, 0.034482758620689655, 0.034482758620689655, 0.04310344827586207, 0.05172413793103448, 0.05172413793103448, 0.9137931034482759, 0.8620689655172413, 0.05172413793103448, 0.0603448275862069, 0.8706896551724138, 0.8706896551724138, 0.896551724137931, 0.9051724137931034, 0.9051724137931034, 0.9137931034482759, 0.9224137931034483, 0.9224137931034483, 0.9224137931034483, 0.9310344827586207, 0.9310344827586207, 0.9310344827586207, 0.9310344827586207, 0.9310344827586207, 0.9310344827586207, 0.9310344827586207, 0.9396551724137931, 0.9310344827586207, 0.9310344827586207, 0.9310344827586207, 0.9310344827586207, 0.9310344827586207, 0.9310344827586207, 0.9310344827586207, 0.9310344827586207, 0.9224137931034483, 0.9224137931034483, 0.9137931034482759, 0.9051724137931034, 0.9051724137931034, 0.896551724137931, 0.8793103448275862, 0.8706896551724138, 0.8706896551724138, 0.07758620689655173, 0.8017241379310345, 0.08620689655172414, 0.08620689655172414, 0.08620689655172414, 0.08620689655172414, 0.09482758620689655, 0.09482758620689655, 0.09482758620689655, 0.09482758620689655, 0.09482758620689655, 0.10344827586206896, 0.11206896551724138, 0.10344827586206896, 0.10344827586206896, 0.11206896551724138, 0.11206896551724138, 0.11206896551724138, 0.11206896551724138, 0.11206896551724138, 0.11206896551724138, 0.11206896551724138, 0.11206896551724138, 0.12931034482758622, 0.13793103448275862, 0.13793103448275862, 0.14655172413793102, 0.15517241379310345, 0.1724137931034483, 0.1896551724137931, 0.25, 0.33620689655172414, 0.6551724137931034], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/TUDOR.gap.json b/pfam_gap_rates/TUDOR.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..4c351fda176570f9843f08e1dc1494ae44538278
--- /dev/null
+++ b/pfam_gap_rates/TUDOR.gap.json
@@ -0,0 +1 @@
+{"family": "TUDOR", "n_seqs": 2258, "length": 137, "gap_rates": [0.8994685562444641, 0.7404782993799823, 0.5810451727192205, 0.5062001771479185, 0.43622674933569533, 0.366696191319752, 0.3148804251550044, 0.2741364038972542, 0.25863596102745795, 0.2462356067316209, 0.24224977856510185, 0.23516386182462357, 0.23073516386182463, 0.22763507528786536, 0.9477413640389726, 0.21656333038086803, 0.21036315323294952, 0.20504871567759078, 0.20062001771479185, 0.1913197519929141, 0.1886625332152347, 0.18821966341895482, 0.8153232949512843, 0.7015057573073517, 0.26660761736049604, 0.2108060230292294, 0.18644818423383525, 0.1771479185119575, 0.16209034543844109, 0.15411868910540302, 0.14127546501328608, 0.1355181576616475, 0.13020372010628875, 0.12223206377325066, 0.11558901682905226, 0.1120460584588131, 0.11160318866253321, 0.10628875110717449, 0.10673162090345438, 0.10451727192205491, 0.10318866253321524, 0.10141718334809566, 0.09964570416297608, 0.0987599645704163, 0.09521700620017715, 0.09433126660761736, 0.09433126660761736, 0.09433126660761736, 0.09433126660761736, 0.8206377325066431, 0.9211691762621789, 0.6585473870682019, 0.46058458813108943, 0.304251550044287, 0.19973427812223207, 0.0983170947741364, 0.07794508414526129, 0.06465899025686449, 0.054030115146147036, 0.0491585473870682, 0.047829937998228524, 0.04650132860938884, 0.046058458813108945, 0.04650132860938884, 0.04118689105403012, 0.04030115146147033, 0.03941541186891054, 0.04118689105403012, 0.04295837023914969, 0.10938883968113375, 0.049601417183348095, 0.03277236492471213, 0.9419840566873339, 0.929140832595217, 0.03100088573959256, 0.030115146147032774, 0.02745792736935341, 0.02745792736935341, 0.02745792736935341, 0.027015057573073518, 0.026572187776793623, 0.8383525243578388, 0.9233835252435784, 0.9397697077059345, 0.8910540301151462, 0.6412754650132861, 0.34233835252435785, 0.05934455270150576, 0.043401240035429584, 0.030115146147032774, 0.027900797165633304, 0.026572187776793623, 0.025686448184233834, 0.022586359610274578, 0.021700620017714792, 0.019929140832595216, 0.019929140832595216, 0.01948627103631532, 0.019929140832595216, 0.02037201062887511, 0.020814880425155006, 0.021700620017714792, 0.022586359610274578, 0.023029229406554472, 0.025686448184233834, 0.03188662533215235, 0.030115146147032774, 0.05713020372010629, 0.05580159433126661, 0.03100088573959256, 0.03188662533215235, 0.03277236492471213, 0.034100974313551816, 0.0354295837023915, 0.03941541186891054, 0.043401240035429584, 0.05004428697962799, 0.8649247121346324, 0.06111603188662533, 0.07130203720106289, 0.07617360496014172, 0.08503100088573959, 0.08901682905225863, 0.9118689105403012, 0.8994685562444641, 0.16386182462356066, 0.10318866253321524, 0.10628875110717449, 0.11160318866253321, 0.1204605845881311, 0.1266607617360496, 0.13596102745792737, 0.1483613817537644, 0.1753764393268379, 0.2112488928255093, 0.35562444641275465, 0.6864481842338352], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/TarH.gap.json b/pfam_gap_rates/TarH.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b22f7601f85d9a76989599d78020bc4e512e0b01
--- /dev/null
+++ b/pfam_gap_rates/TarH.gap.json
@@ -0,0 +1 @@
+{"family": "TarH", "n_seqs": 248, "length": 186, "gap_rates": [0.5645161290322581, 0.4032258064516129, 0.2782258064516129, 0.20967741935483872, 0.1693548387096774, 0.10887096774193548, 0.08870967741935484, 0.08870967741935484, 0.08064516129032258, 0.07258064516129033, 0.07258064516129033, 0.06854838709677419, 0.06854838709677419, 0.06854838709677419, 0.06048387096774194, 0.05241935483870968, 0.05241935483870968, 0.05241935483870968, 0.05241935483870968, 0.05241935483870968, 0.05241935483870968, 0.04838709677419355, 0.04838709677419355, 0.04838709677419355, 0.04838709677419355, 0.04435483870967742, 0.04435483870967742, 0.04435483870967742, 0.04435483870967742, 0.04435483870967742, 0.04435483870967742, 0.04435483870967742, 0.04435483870967742, 0.04435483870967742, 0.04435483870967742, 0.04435483870967742, 0.04435483870967742, 0.04032258064516129, 0.04435483870967742, 0.04838709677419355, 0.04032258064516129, 0.04032258064516129, 0.04435483870967742, 0.0846774193548387, 0.05241935483870968, 0.04838709677419355, 0.04838709677419355, 0.35080645161290325, 0.05241935483870968, 0.05241935483870968, 0.04838709677419355, 0.04032258064516129, 0.04032258064516129, 0.04032258064516129, 0.04032258064516129, 0.04435483870967742, 0.04435483870967742, 0.04435483870967742, 0.04838709677419355, 0.05241935483870968, 0.05241935483870968, 0.05241935483870968, 0.05241935483870968, 0.05241935483870968, 0.05241935483870968, 0.056451612903225805, 0.05241935483870968, 0.056451612903225805, 0.05241935483870968, 0.056451612903225805, 0.5403225806451613, 0.5080645161290323, 0.43951612903225806, 0.14516129032258066, 0.05241935483870968, 0.05241935483870968, 0.05241935483870968, 0.056451612903225805, 0.05241935483870968, 0.056451612903225805, 0.06451612903225806, 0.07258064516129033, 0.08870967741935484, 0.7459677419354839, 0.7983870967741935, 0.8870967741935484, 0.9193548387096774, 0.9032258064516129, 0.8467741935483871, 0.7701612903225806, 0.6814516129032258, 0.11290322580645161, 0.07258064516129033, 0.05241935483870968, 0.05241935483870968, 0.04032258064516129, 0.04838709677419355, 0.04838709677419355, 0.05241935483870968, 0.05241935483870968, 0.056451612903225805, 0.05241935483870968, 0.056451612903225805, 0.06048387096774194, 0.06451612903225806, 0.06048387096774194, 0.06048387096774194, 0.06854838709677419, 0.06451612903225806, 0.06451612903225806, 0.06048387096774194, 0.06451612903225806, 0.06451612903225806, 0.06451612903225806, 0.06854838709677419, 0.06854838709677419, 0.06854838709677419, 0.06854838709677419, 0.07661290322580645, 0.6209677419354839, 0.10483870967741936, 0.11693548387096774, 0.10483870967741936, 0.11290322580645161, 0.10080645161290322, 0.09274193548387097, 0.08870967741935484, 0.08064516129032258, 0.07258064516129033, 0.07258064516129033, 0.07258064516129033, 0.08064516129032258, 0.0846774193548387, 0.0846774193548387, 0.0846774193548387, 0.5241935483870968, 0.09274193548387097, 0.10080645161290322, 0.08870967741935484, 0.09274193548387097, 0.09274193548387097, 0.09274193548387097, 0.09274193548387097, 0.10080645161290322, 0.10080645161290322, 0.10080645161290322, 0.10080645161290322, 0.10887096774193548, 0.12096774193548387, 0.12096774193548387, 0.12096774193548387, 0.12096774193548387, 0.12096774193548387, 0.12096774193548387, 0.12903225806451613, 0.13709677419354838, 0.14919354838709678, 0.16129032258064516, 0.20161290322580644, 0.1975806451612903, 0.1814516129032258, 0.18951612903225806, 0.1975806451612903, 0.20161290322580644, 0.20161290322580644, 0.2056451612903226, 0.21370967741935484, 0.21774193548387097, 0.21774193548387097, 0.22580645161290322, 0.23387096774193547, 0.25, 0.2661290322580645, 0.28225806451612906, 0.2903225806451613, 0.3024193548387097, 0.32661290322580644, 0.5080645161290323, 0.5161290322580645, 0.5403225806451613, 0.5685483870967742, 0.5483870967741935, 0.5806451612903226, 0.657258064516129, 0.7459677419354839, 0.9274193548387096], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/TauD.gap.json b/pfam_gap_rates/TauD.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..54a88cab5724a67e0fe61a64c051120ea4675dd8
--- /dev/null
+++ b/pfam_gap_rates/TauD.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/TelA.gap.json b/pfam_gap_rates/TelA.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..56f06da63a39054e6c839daa8d0ae1be0607bbe6
--- /dev/null
+++ b/pfam_gap_rates/TelA.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/TetR.gap.json b/pfam_gap_rates/TetR.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..436f75acbc484c79d741a5b8ebc3f6734b9bb290
--- /dev/null
+++ b/pfam_gap_rates/TetR.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/TetR_C_10.gap.json b/pfam_gap_rates/TetR_C_10.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..7a4ee5533f9fbe10fc80fd32729d5138795d7ac3
--- /dev/null
+++ b/pfam_gap_rates/TetR_C_10.gap.json
@@ -0,0 +1 @@
+{"family": "TetR_C_10", "n_seqs": 115, "length": 136, "gap_rates": [0.7304347826086957, 0.6956521739130435, 0.6347826086956522, 0.5826086956521739, 0.5652173913043478, 0.48695652173913045, 0.41739130434782606, 0.3739130434782609, 0.3652173913043478, 0.33043478260869563, 0.30434782608695654, 0.25217391304347825, 0.24347826086956523, 0.17391304347826086, 0.17391304347826086, 0.17391304347826086, 0.1391304347826087, 0.11304347826086956, 0.09565217391304348, 0.09565217391304348, 0.10434782608695652, 0.06956521739130435, 0.06086956521739131, 0.05217391304347826, 0.034782608695652174, 0.034782608695652174, 0.02608695652173913, 0.02608695652173913, 0.02608695652173913, 0.017391304347826087, 0.017391304347826087, 0.017391304347826087, 0.008695652173913044, 0.008695652173913044, 0.008695652173913044, 0.008695652173913044, 0.008695652173913044, 0.008695652173913044, 0.008695652173913044, 0.008695652173913044, 0.008695652173913044, 0.017391304347826087, 0.017391304347826087, 0.008695652173913044, 0.017391304347826087, 0.008695652173913044, 0.008695652173913044, 0.017391304347826087, 0.008695652173913044, 0.008695652173913044, 0.008695652173913044, 0.008695652173913044, 0.008695652173913044, 0.008695652173913044, 0.008695652173913044, 0.9043478260869565, 0.008695652173913044, 0.008695652173913044, 0.008695652173913044, 0.008695652173913044, 0.008695652173913044, 0.008695652173913044, 0.008695652173913044, 0.008695652173913044, 0.017391304347826087, 0.9391304347826087, 0.02608695652173913, 0.008695652173913044, 0.034782608695652174, 0.9478260869565217, 0.9478260869565217, 0.034782608695652174, 0.0, 0.008695652173913044, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.017391304347826087, 0.017391304347826087, 0.017391304347826087, 0.008695652173913044, 0.017391304347826087, 0.017391304347826087, 0.008695652173913044, 0.008695652173913044, 0.008695652173913044, 0.008695652173913044, 0.008695652173913044, 0.008695652173913044, 0.008695652173913044, 0.008695652173913044, 0.008695652173913044, 0.008695652173913044, 0.008695652173913044, 0.008695652173913044, 0.008695652173913044, 0.008695652173913044, 0.008695652173913044, 0.008695652173913044, 0.008695652173913044, 0.008695652173913044, 0.008695652173913044, 0.008695652173913044, 0.017391304347826087, 0.017391304347826087, 0.043478260869565216, 0.043478260869565216, 0.034782608695652174, 0.043478260869565216, 0.05217391304347826, 0.05217391304347826, 0.06956521739130435, 0.06086956521739131, 0.05217391304347826, 0.06956521739130435, 0.06086956521739131, 0.05217391304347826, 0.06086956521739131, 0.06086956521739131, 0.06086956521739131, 0.08695652173913043, 0.0782608695652174, 0.09565217391304348, 0.0782608695652174, 0.0782608695652174, 0.0782608695652174, 0.0782608695652174, 0.0782608695652174, 0.11304347826086956, 0.14782608695652175, 0.25217391304347825, 0.7739130434782608], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/TetR_C_11.gap.json b/pfam_gap_rates/TetR_C_11.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d7aacd53e64d5508a9506b024d5f80a969d67d66
--- /dev/null
+++ b/pfam_gap_rates/TetR_C_11.gap.json
@@ -0,0 +1 @@
+{"family": "TetR_C_11", "n_seqs": 974, "length": 114, "gap_rates": [0.648870636550308, 0.37474332648870634, 0.3028747433264887, 0.2535934291581109, 0.21971252566735114, 0.1673511293634497, 0.14784394250513347, 0.13860369609856263, 0.12422997946611909, 0.11396303901437371, 0.07597535934291581, 0.06776180698151951, 0.059548254620123205, 0.0513347022587269, 0.049281314168377825, 0.048254620123203286, 0.04620123203285421, 0.039014373716632446, 0.043121149897330596, 0.03490759753593429, 0.059548254620123205, 0.03285420944558522, 0.028747433264887063, 0.030800821355236138, 0.30903490759753593, 0.1570841889117043, 0.02566735112936345, 0.02053388090349076, 0.018480492813141684, 0.014373716632443531, 0.012320328542094456, 0.011293634496919919, 0.011293634496919919, 0.014373716632443531, 0.02566735112936345, 0.023613963039014373, 0.021560574948665298, 0.011293634496919919, 0.07084188911704312, 0.039014373716632446, 0.019507186858316223, 0.014373716632443531, 0.03490759753593429, 0.024640657084188913, 0.022587268993839837, 0.015400410677618069, 0.012320328542094456, 0.008213552361396304, 0.011293634496919919, 0.009240246406570842, 0.28336755646817247, 0.03285420944558522, 0.011293634496919919, 0.014373716632443531, 0.008213552361396304, 0.007186858316221766, 0.00513347022587269, 0.00513347022587269, 0.004106776180698152, 0.002053388090349076, 0.002053388090349076, 0.002053388090349076, 0.003080082135523614, 0.002053388090349076, 0.008213552361396304, 0.013347022587268994, 0.013347022587268994, 0.018480492813141684, 0.017453798767967144, 0.02053388090349076, 0.017453798767967144, 0.015400410677618069, 0.012320328542094456, 0.01026694045174538, 0.014373716632443531, 0.14784394250513347, 0.08213552361396304, 0.02053388090349076, 0.011293634496919919, 0.007186858316221766, 0.007186858316221766, 0.007186858316221766, 0.007186858316221766, 0.007186858316221766, 0.007186858316221766, 0.007186858316221766, 0.009240246406570842, 0.01026694045174538, 0.011293634496919919, 0.012320328542094456, 0.021560574948665298, 0.021560574948665298, 0.03285420944558522, 0.04209445585215606, 0.049281314168377825, 0.06673511293634497, 0.06878850102669405, 0.07700205338809035, 0.1457905544147844, 0.9301848049281314, 0.12628336755646818, 0.1324435318275154, 0.1375770020533881, 0.1437371663244353, 0.14989733059548255, 0.15503080082135523, 0.1673511293634497, 0.17659137577002054, 0.18993839835728954, 0.20944558521560575, 0.23819301848049282, 0.29876796714579057, 0.41581108829568786, 0.7084188911704312], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/TetR_C_13.gap.json b/pfam_gap_rates/TetR_C_13.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..72796dfb8ff1d49fe06477763e8c0a9d88e37c5d
--- /dev/null
+++ b/pfam_gap_rates/TetR_C_13.gap.json
@@ -0,0 +1 @@
+{"family": "TetR_C_13", "n_seqs": 479, "length": 114, "gap_rates": [0.7139874739039666, 0.5845511482254697, 0.5260960334029228, 0.3966597077244259, 0.3235908141962422, 0.2860125260960334, 0.2755741127348643, 0.26931106471816285, 0.2651356993736952, 0.2609603340292276, 0.2630480167014614, 0.267223382045929, 0.2609603340292276, 0.24843423799582465, 0.23799582463465555, 0.2254697286012526, 0.21711899791231734, 0.20668058455114824, 0.18789144050104384, 0.15657620041753653, 0.12943632567849686, 0.12526096033402923, 0.07933194154488518, 0.081419624217119, 0.014613778705636743, 0.0041753653444676405, 0.0041753653444676405, 0.0041753653444676405, 0.0041753653444676405, 0.0041753653444676405, 0.0041753653444676405, 0.0041753653444676405, 0.0041753653444676405, 0.0041753653444676405, 0.0041753653444676405, 0.0041753653444676405, 0.006263048016701462, 0.008350730688935281, 0.006263048016701462, 0.0041753653444676405, 0.006263048016701462, 0.008350730688935281, 0.0041753653444676405, 0.0041753653444676405, 0.0041753653444676405, 0.006263048016701462, 0.0041753653444676405, 0.0041753653444676405, 0.0041753653444676405, 0.0041753653444676405, 0.0041753653444676405, 0.0041753653444676405, 0.0041753653444676405, 0.0041753653444676405, 0.0041753653444676405, 0.0041753653444676405, 0.0041753653444676405, 0.0041753653444676405, 0.0041753653444676405, 0.0041753653444676405, 0.0041753653444676405, 0.0041753653444676405, 0.008350730688935281, 0.012526096033402923, 0.022964509394572025, 0.033402922755741124, 0.05010438413361169, 0.04175365344467641, 0.033402922755741124, 0.03966597077244259, 0.10020876826722339, 0.031315240083507306, 0.03549060542797495, 0.018789144050104383, 0.012526096033402923, 0.006263048016701462, 0.006263048016701462, 0.006263048016701462, 0.006263048016701462, 0.006263048016701462, 0.006263048016701462, 0.006263048016701462, 0.0041753653444676405, 0.0041753653444676405, 0.008350730688935281, 0.012526096033402923, 0.027139874739039668, 0.027139874739039668, 0.031315240083507306, 0.06680584551148225, 0.07724425887265135, 0.07724425887265135, 0.07933194154488518, 0.07933194154488518, 0.07933194154488518, 0.08559498956158663, 0.09394572025052192, 0.10438413361169102, 0.11064718162839249, 0.11691022964509394, 0.12943632567849686, 0.1544885177453027, 0.162839248434238, 0.17536534446764093, 0.2045929018789144, 0.2567849686847599, 0.2881002087682672, 0.33820459290187893, 0.4133611691022965, 0.511482254697286, 0.5636743215031316, 0.6200417536534447, 0.7432150313152401, 0.8538622129436325], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Tet_JBP.gap.json b/pfam_gap_rates/Tet_JBP.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..32fda71b71b8bee49b969d73fe11e231eb7fb781
--- /dev/null
+++ b/pfam_gap_rates/Tet_JBP.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/TfoX_C.gap.json b/pfam_gap_rates/TfoX_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..1facd8494680be0c697fcb5f016d153bcc045ccd
--- /dev/null
+++ b/pfam_gap_rates/TfoX_C.gap.json
@@ -0,0 +1 @@
+{"family": "TfoX_C", "n_seqs": 219, "length": 81, "gap_rates": [0.7853881278538812, 0.593607305936073, 0.2328767123287671, 0.1506849315068493, 0.1278538812785388, 0.0958904109589041, 0.0776255707762557, 0.0639269406392694, 0.0639269406392694, 0.0273972602739726, 0.0228310502283105, 0.0182648401826484, 0.0136986301369863, 0.0091324200913242, 0.0045662100456621, 0.0045662100456621, 0.0045662100456621, 0.0045662100456621, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0045662100456621, 0.0091324200913242, 0.0091324200913242, 0.0091324200913242, 0.0091324200913242, 0.0091324200913242, 0.0091324200913242, 0.0091324200913242, 0.0091324200913242, 0.0091324200913242, 0.7990867579908676, 0.0228310502283105, 0.0365296803652968, 0.0228310502283105, 0.0136986301369863, 0.0136986301369863, 0.0136986301369863, 0.0136986301369863, 0.0136986301369863, 0.0136986301369863, 0.0136986301369863, 0.0182648401826484, 0.0182648401826484, 0.0228310502283105, 0.0228310502283105, 0.0228310502283105, 0.0319634703196347, 0.0319634703196347, 0.0365296803652968, 0.0365296803652968, 0.0410958904109589, 0.0410958904109589, 0.045662100456621, 0.045662100456621, 0.0502283105022831, 0.0502283105022831, 0.0502283105022831, 0.0502283105022831, 0.0502283105022831, 0.0547945205479452, 0.0547945205479452, 0.0547945205479452, 0.0639269406392694, 0.0684931506849315, 0.1552511415525114, 0.593607305936073, 0.9452054794520548], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/ThiI.gap.json b/pfam_gap_rates/ThiI.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c49f1c5fe1a6bb484a82da80c25a9a2877b85806
--- /dev/null
+++ b/pfam_gap_rates/ThiI.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Thia_YuaJ.gap.json b/pfam_gap_rates/Thia_YuaJ.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..82b65f533bc0561869d11966d2eaf5eb1b6ebf19
--- /dev/null
+++ b/pfam_gap_rates/Thia_YuaJ.gap.json
@@ -0,0 +1 @@
+{"family": "Thia_YuaJ", "n_seqs": 357, "length": 188, "gap_rates": [0.4481792717086835, 0.1568627450980392, 0.12044817927170869, 0.04201680672268908, 0.036414565826330535, 0.03361344537815126, 0.028011204481792718, 0.028011204481792718, 0.028011204481792718, 0.028011204481792718, 0.028011204481792718, 0.028011204481792718, 0.025210084033613446, 0.025210084033613446, 0.025210084033613446, 0.025210084033613446, 0.025210084033613446, 0.876750700280112, 0.9411764705882353, 0.9243697478991597, 0.8123249299719888, 0.025210084033613446, 0.028011204481792718, 0.03361344537815126, 0.036414565826330535, 0.05322128851540616, 0.10644257703081232, 0.0392156862745098, 0.03081232492997199, 0.025210084033613446, 0.022408963585434174, 0.022408963585434174, 0.022408963585434174, 0.022408963585434174, 0.5126050420168067, 0.022408963585434174, 0.022408963585434174, 0.025210084033613446, 0.025210084033613446, 0.022408963585434174, 0.022408963585434174, 0.022408963585434174, 0.022408963585434174, 0.022408963585434174, 0.0196078431372549, 0.0196078431372549, 0.0196078431372549, 0.0196078431372549, 0.0196078431372549, 0.0196078431372549, 0.0196078431372549, 0.0196078431372549, 0.0196078431372549, 0.0196078431372549, 0.0196078431372549, 0.0196078431372549, 0.0196078431372549, 0.0196078431372549, 0.0196078431372549, 0.0196078431372549, 0.022408963585434174, 0.022408963585434174, 0.022408963585434174, 0.022408963585434174, 0.022408963585434174, 0.938375350140056, 0.938375350140056, 0.9299719887955182, 0.03081232492997199, 0.028011204481792718, 0.028011204481792718, 0.5406162464985994, 0.0392156862745098, 0.9215686274509803, 0.9495798319327731, 0.9047619047619048, 0.028011204481792718, 0.022408963585434174, 0.022408963585434174, 0.022408963585434174, 0.025210084033613446, 0.025210084033613446, 0.022408963585434174, 0.022408963585434174, 0.022408963585434174, 0.022408963585434174, 0.025210084033613446, 0.0196078431372549, 0.0196078431372549, 0.0196078431372549, 0.0196078431372549, 0.0196078431372549, 0.0196078431372549, 0.0196078431372549, 0.0196078431372549, 0.0196078431372549, 0.01680672268907563, 0.01680672268907563, 0.01680672268907563, 0.01680672268907563, 0.01680672268907563, 0.01680672268907563, 0.5630252100840336, 0.6442577030812325, 0.6694677871148459, 0.711484593837535, 0.6946778711484594, 0.6778711484593838, 0.6218487394957983, 0.5882352941176471, 0.5854341736694678, 0.5742296918767507, 0.5098039215686274, 0.4789915966386555, 0.3949579831932773, 0.24929971988795518, 0.1792717086834734, 0.15966386554621848, 0.025210084033613446, 0.014005602240896359, 0.014005602240896359, 0.014005602240896359, 0.014005602240896359, 0.014005602240896359, 0.01680672268907563, 0.014005602240896359, 0.014005602240896359, 0.014005602240896359, 0.01680672268907563, 0.01680672268907563, 0.01680672268907563, 0.01680672268907563, 0.01680672268907563, 0.0196078431372549, 0.0196078431372549, 0.0196078431372549, 0.01680672268907563, 0.0196078431372549, 0.0196078431372549, 0.022408963585434174, 0.025210084033613446, 0.028011204481792718, 0.025210084033613446, 0.025210084033613446, 0.028011204481792718, 0.08403361344537816, 0.05322128851540616, 0.10644257703081232, 0.06722689075630252, 0.9411764705882353, 0.07282913165266107, 0.09803921568627451, 0.08403361344537816, 0.06722689075630252, 0.06722689075630252, 0.06722689075630252, 0.06722689075630252, 0.05322128851540616, 0.05042016806722689, 0.05042016806722689, 0.056022408963585436, 0.056022408963585436, 0.056022408963585436, 0.06442577030812324, 0.056022408963585436, 0.056022408963585436, 0.056022408963585436, 0.056022408963585436, 0.056022408963585436, 0.056022408963585436, 0.058823529411764705, 0.056022408963585436, 0.056022408963585436, 0.058823529411764705, 0.058823529411764705, 0.058823529411764705, 0.06162464985994398, 0.06442577030812324, 0.07282913165266107, 0.07563025210084033, 0.1092436974789916, 0.14285714285714285, 0.2549019607843137, 0.37254901960784315, 0.5406162464985994, 0.6078431372549019, 0.6750700280112045, 0.7703081232492998], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Thioesterase.gap.json b/pfam_gap_rates/Thioesterase.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b0a705418fad41b2ae4f4ac9f8eeaa16ea5bdd3c
--- /dev/null
+++ b/pfam_gap_rates/Thioesterase.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Thiolase_N.gap.json b/pfam_gap_rates/Thiolase_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..aa61fedcd12621992a4c182fb2e551bef89850c4
--- /dev/null
+++ b/pfam_gap_rates/Thiolase_N.gap.json
@@ -0,0 +1 @@
+{"family": "Thiolase_N", "n_seqs": 5000, "length": 292, "gap_rates": [0.507, 0.1868, 0.1406, 0.1316, 0.1246, 0.1224, 0.1198, 0.1132, 0.1096, 0.1082, 0.1052, 0.1038, 0.1022, 0.9374, 0.7526, 0.2008, 0.1882, 0.177, 0.1578, 0.099, 0.086, 0.0806, 0.0752, 0.0692, 0.0654, 0.0642, 0.0624, 0.062, 0.0606, 0.0592, 0.0582, 0.0578, 0.057, 0.0564, 0.0558, 0.0548, 0.0554, 0.0544, 0.055, 0.055, 0.0562, 0.8224, 0.0586, 0.0574, 0.0594, 0.0574, 0.0546, 0.0558, 0.0544, 0.0546, 0.0532, 0.0534, 0.0528, 0.0508, 0.0528, 0.0576, 0.0624, 0.0732, 0.0764, 0.698, 0.0796, 0.0762, 0.0698, 0.065, 0.0698, 0.8282, 0.0708, 0.0676, 0.0616, 0.055, 0.0522, 0.0514, 0.0508, 0.0502, 0.0504, 0.0518, 0.0502, 0.1826, 0.061, 0.0514, 0.0486, 0.0462, 0.0462, 0.0454, 0.0456, 0.0458, 0.0456, 0.0456, 0.0446, 0.0448, 0.045, 0.045, 0.0452, 0.044, 0.044, 0.0442, 0.0438, 0.0434, 0.0436, 0.043, 0.0426, 0.0422, 0.0422, 0.0424, 0.0416, 0.042, 0.0424, 0.0436, 0.0434, 0.0422, 0.0416, 0.0412, 0.0408, 0.0406, 0.0404, 0.0404, 0.0404, 0.042, 0.0424, 0.0454, 0.047, 0.05, 0.0508, 0.052, 0.0522, 0.0534, 0.0552, 0.0588, 0.596, 0.1976, 0.14, 0.1314, 0.8596, 0.891, 0.9098, 0.9116, 0.9158, 0.9204, 0.9218, 0.9188, 0.9138, 0.911, 0.9056, 0.875, 0.8442, 0.1054, 0.103, 0.0942, 0.088, 0.0856, 0.0772, 0.0758, 0.0758, 0.0748, 0.08, 0.0752, 0.0754, 0.0776, 0.082, 0.1636, 0.153, 0.1692, 0.9056, 0.9494, 0.8842, 0.4902, 0.4408, 0.4246, 0.4158, 0.4016, 0.3988, 0.382, 0.3534, 0.308, 0.2084, 0.1826, 0.066, 0.065, 0.0636, 0.055, 0.055, 0.0548, 0.0554, 0.0556, 0.0558, 0.0558, 0.0556, 0.0552, 0.0562, 0.0562, 0.056, 0.0566, 0.0566, 0.0558, 0.0562, 0.0564, 0.0572, 0.0574, 0.0576, 0.058, 0.058, 0.0582, 0.0582, 0.0584, 0.0586, 0.0592, 0.0594, 0.06, 0.061, 0.0624, 0.065, 0.0684, 0.187, 0.0842, 0.0826, 0.0844, 0.1226, 0.104, 0.217, 0.2112, 0.184, 0.1818, 0.2036, 0.2212, 0.2218, 0.2676, 0.2632, 0.3166, 0.3172, 0.6718, 0.2924, 0.8392, 0.8466, 0.8798, 0.916, 0.942, 0.9116, 0.8638, 0.843, 0.833, 0.2242, 0.1766, 0.1058, 0.0966, 0.0968, 0.096, 0.0968, 0.0974, 0.0964, 0.0962, 0.2902, 0.098, 0.0968, 0.096, 0.0954, 0.0954, 0.0954, 0.0958, 0.0964, 0.0968, 0.1966, 0.1872, 0.1884, 0.197, 0.1912, 0.2318, 0.1976, 0.823, 0.1974, 0.2094, 0.2162, 0.2188, 0.2194, 0.2196, 0.1366, 0.1372, 0.138, 0.1382, 0.1384, 0.1394, 0.1394, 0.14, 0.14, 0.1408, 0.141, 0.1414, 0.142, 0.1428, 0.1492, 0.1642, 0.2796, 0.7164], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Thioredoxin.gap.json b/pfam_gap_rates/Thioredoxin.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d1774512e89546f76af922c4b05741172c9a722b
--- /dev/null
+++ b/pfam_gap_rates/Thioredoxin.gap.json
@@ -0,0 +1 @@
+{"family": "Thioredoxin", "n_seqs": 5000, "length": 111, "gap_rates": [0.7292, 0.5918, 0.4584, 0.3896, 0.334, 0.3002, 0.2686, 0.2464, 0.2316, 0.2184, 0.199, 0.1868, 0.1684, 0.1536, 0.1448, 0.92, 0.8552, 0.427, 0.149, 0.075, 0.0586, 0.05, 0.0428, 0.0402, 0.0382, 0.0352, 0.0338, 0.0324, 0.0306, 0.0306, 0.0302, 0.029, 0.0262, 0.0262, 0.0256, 0.0236, 0.019, 0.0178, 0.0156, 0.0134, 0.0116, 0.012, 0.0122, 0.0114, 0.012, 0.0124, 0.0122, 0.0124, 0.0124, 0.2606, 0.7448, 0.9386, 0.855, 0.6668, 0.0332, 0.0148, 0.0126, 0.0114, 0.0112, 0.0112, 0.0108, 0.011, 0.0124, 0.0138, 0.021, 0.0198, 0.0518, 0.039, 0.0316, 0.0208, 0.0202, 0.0276, 0.0278, 0.0228, 0.0246, 0.0244, 0.025, 0.0258, 0.0262, 0.0264, 0.027, 0.0274, 0.029, 0.03, 0.0338, 0.0368, 0.0422, 0.047, 0.0566, 0.063, 0.137, 0.9214, 0.8432, 0.0946, 0.0992, 0.1074, 0.1152, 0.1308, 0.2884, 0.16, 0.1644, 0.171, 0.1784, 0.1844, 0.2002, 0.2142, 0.2406, 0.2828, 0.4088, 0.647, 0.9294], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Thoc2.gap.json b/pfam_gap_rates/Thoc2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..584aa2266bb60805c5f029953321fd66db33b1f2
--- /dev/null
+++ b/pfam_gap_rates/Thoc2.gap.json
@@ -0,0 +1 @@
+{"family": "Thoc2", "n_seqs": 294, "length": 77, "gap_rates": [0.07482993197278912, 0.061224489795918366, 0.05442176870748299, 0.03741496598639456, 0.034013605442176874, 0.027210884353741496, 0.027210884353741496, 0.027210884353741496, 0.027210884353741496, 0.027210884353741496, 0.027210884353741496, 0.023809523809523808, 0.02040816326530612, 0.02040816326530612, 0.02040816326530612, 0.017006802721088437, 0.017006802721088437, 0.017006802721088437, 0.017006802721088437, 0.013605442176870748, 0.013605442176870748, 0.013605442176870748, 0.013605442176870748, 0.013605442176870748, 0.013605442176870748, 0.003401360544217687, 0.003401360544217687, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.01020408163265306, 0.01020408163265306, 0.01020408163265306, 0.01020408163265306, 0.013605442176870748, 0.013605442176870748, 0.017006802721088437, 0.017006802721088437, 0.01020408163265306, 0.013605442176870748, 0.013605442176870748, 0.023809523809523808, 0.027210884353741496, 0.030612244897959183, 0.030612244897959183, 0.034013605442176874, 0.03741496598639456, 0.24489795918367346, 0.05102040816326531, 0.06802721088435375, 0.06802721088435375, 0.07482993197278912, 0.06802721088435375, 0.06802721088435375, 0.07482993197278912, 0.0782312925170068, 0.8673469387755102, 0.10204081632653061, 0.08503401360544217, 0.08163265306122448, 0.08843537414965986, 0.09183673469387756, 0.09183673469387756, 0.09183673469387756, 0.09183673469387756, 0.09183673469387756, 0.10204081632653061, 0.16666666666666666], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Thyroglobulin_1.gap.json b/pfam_gap_rates/Thyroglobulin_1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..5fc78086895de1f3095d72f301d061cd408c6651
--- /dev/null
+++ b/pfam_gap_rates/Thyroglobulin_1.gap.json
@@ -0,0 +1 @@
+{"family": "Thyroglobulin_1", "n_seqs": 1055, "length": 82, "gap_rates": [0.5800947867298578, 0.571563981042654, 0.5516587677725119, 0.5459715639810426, 0.5345971563981042, 0.5222748815165876, 0.5118483412322274, 0.5061611374407583, 0.5033175355450237, 0.4995260663507109, 0.4900473933649289, 0.4966824644549763, 0.6862559241706161, 0.7014218009478673, 0.9289099526066351, 0.9412322274881516, 0.8672985781990521, 0.45118483412322274, 0.36492890995260663, 0.32132701421800947, 0.2843601895734597, 0.2862559241706161, 0.9165876777251185, 0.195260663507109, 0.16303317535545023, 0.13744075829383887, 0.11563981042654028, 0.08341232227488152, 0.061611374407582936, 0.022748815165876776, 0.014218009478672985, 0.013270142180094787, 0.013270142180094787, 0.013270142180094787, 0.9165876777251185, 0.012322274881516588, 0.007582938388625593, 0.007582938388625593, 0.005687203791469194, 0.004739336492890996, 0.004739336492890996, 0.004739336492890996, 0.0037914691943127963, 0.009478672985781991, 0.01042654028436019, 0.8957345971563981, 0.9241706161137441, 0.9232227488151659, 0.8720379146919431, 0.3042654028436019, 0.23412322274881517, 0.9308056872037914, 0.9478672985781991, 0.9478672985781991, 0.9251184834123223, 0.021800947867298578, 0.01800947867298578, 0.017061611374407582, 0.016113744075829384, 0.017061611374407582, 0.017061611374407582, 0.01800947867298578, 0.02085308056872038, 0.021800947867298578, 0.7260663507109004, 0.024644549763033177, 0.02843601895734597, 0.037914691943127965, 0.04454976303317536, 0.06255924170616113, 0.07014218009478673, 0.09573459715639811, 0.12796208530805686, 0.15734597156398103, 0.1933649289099526, 0.22654028436018958, 0.3071090047393365, 0.4018957345971564, 0.861611374407583, 0.37156398104265403, 0.3990521327014218, 0.4218009478672986], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Tmemb_55A.gap.json b/pfam_gap_rates/Tmemb_55A.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..89f6b3d5232642fac94f7a11b46fc9a24ec7073a
--- /dev/null
+++ b/pfam_gap_rates/Tmemb_55A.gap.json
@@ -0,0 +1 @@
+{"family": "Tmemb_55A", "n_seqs": 119, "length": 306, "gap_rates": [0.8151260504201681, 0.6302521008403361, 0.5798319327731093, 0.5798319327731093, 0.5798319327731093, 0.5798319327731093, 0.5798319327731093, 0.5798319327731093, 0.8067226890756303, 0.8151260504201681, 0.8151260504201681, 0.8235294117647058, 0.8319327731092437, 0.8403361344537815, 0.8739495798319328, 0.8739495798319328, 0.8991596638655462, 0.8991596638655462, 0.907563025210084, 0.907563025210084, 0.9159663865546218, 0.907563025210084, 0.8991596638655462, 0.8991596638655462, 0.8823529411764706, 0.8739495798319328, 0.865546218487395, 0.8319327731092437, 0.8235294117647058, 0.8235294117647058, 0.8151260504201681, 0.8067226890756303, 0.8067226890756303, 0.6302521008403361, 0.680672268907563, 0.6470588235294118, 0.6554621848739496, 0.6638655462184874, 0.8487394957983193, 0.8067226890756303, 0.7815126050420168, 0.6890756302521008, 0.6638655462184874, 0.6638655462184874, 0.6302521008403361, 0.5882352941176471, 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\ No newline at end of file
diff --git a/pfam_gap_rates/Tmemb_9.gap.json b/pfam_gap_rates/Tmemb_9.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e0499a48a1cf9e2ca884db42508bbbd2cff9a6bf
--- /dev/null
+++ b/pfam_gap_rates/Tmemb_9.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Tn916-Xis.gap.json b/pfam_gap_rates/Tn916-Xis.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c7c69d44fd78994e8128e1c34976b98ca6f3be30
--- /dev/null
+++ b/pfam_gap_rates/Tn916-Xis.gap.json
@@ -0,0 +1 @@
+{"family": "Tn916-Xis", "n_seqs": 158, "length": 68, "gap_rates": [0.9240506329113924, 0.8544303797468354, 0.8291139240506329, 0.7721518987341772, 0.5569620253164557, 0.12658227848101267, 0.08860759493670886, 0.0759493670886076, 0.06962025316455696, 0.06962025316455696, 0.05063291139240506, 0.012658227848101266, 0.012658227848101266, 0.012658227848101266, 0.006329113924050633, 0.006329113924050633, 0.006329113924050633, 0.006329113924050633, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.43670886075949367, 0.012658227848101266, 0.006329113924050633, 0.0, 0.0, 0.0, 0.0, 0.006329113924050633, 0.012658227848101266, 0.012658227848101266, 0.006329113924050633, 0.006329113924050633, 0.006329113924050633, 0.006329113924050633, 0.006329113924050633, 0.006329113924050633, 0.006329113924050633, 0.006329113924050633, 0.006329113924050633, 0.012658227848101266, 0.0189873417721519, 0.0189873417721519, 0.0189873417721519, 0.0189873417721519, 0.0189873417721519, 0.02531645569620253, 0.02531645569620253, 0.03164556962025317, 0.056962025316455694, 0.2848101265822785, 0.4873417721518987, 0.6392405063291139, 0.7784810126582279], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/TnpB_IS66.gap.json b/pfam_gap_rates/TnpB_IS66.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d98566956448f30fbb7d18806cc37f614abfa9f8
--- /dev/null
+++ b/pfam_gap_rates/TnpB_IS66.gap.json
@@ -0,0 +1 @@
+{"family": "TnpB_IS66", "n_seqs": 739, "length": 101, "gap_rates": [0.21921515561569688, 0.14614343707713126, 0.14208389715832206, 0.13261163734776726, 0.12719891745602166, 0.12449255751014884, 0.12178619756427606, 0.12178619756427606, 0.11637347767253045, 0.11366711772665765, 0.07713125845737483, 0.07577807848443843, 0.07442489851150202, 0.07307171853856563, 0.06901217861975643, 0.06901217861975643, 0.06901217861975643, 0.06901217861975643, 0.06630581867388363, 0.06224627875507442, 0.06224627875507442, 0.06089309878213803, 0.06224627875507442, 0.06359945872801083, 0.06359945872801083, 0.06901217861975643, 0.05412719891745602, 0.05412719891745602, 0.05006765899864682, 0.05142083897158322, 0.11772665764546685, 0.05006765899864682, 0.04871447902571042, 0.04736129905277402, 0.9499323410013532, 0.04194857916102842, 0.04194857916102842, 0.03924221921515562, 0.04059539918809202, 0.04059539918809202, 0.037889039242219216, 0.03924221921515562, 0.044654939106901215, 0.04194857916102842, 0.04330175913396482, 0.044654939106901215, 0.03924221921515562, 0.03924221921515562, 0.037889039242219216, 0.03924221921515562, 0.04330175913396482, 0.04871447902571042, 0.04871447902571042, 0.05006765899864682, 0.046008119079837616, 0.04736129905277402, 0.04736129905277402, 0.046008119079837616, 0.05277401894451962, 0.05412719891745602, 0.05548037889039242, 0.056833558863328824, 0.05953991880920163, 0.05953991880920163, 0.05953991880920163, 0.06359945872801083, 0.06495263870094722, 0.06630581867388363, 0.06765899864682003, 0.06901217861975643, 0.07171853856562922, 0.07577807848443843, 0.07848443843031123, 0.8876860622462788, 0.7253044654939107, 0.13802435723951287, 0.12313937753721245, 0.11231393775372124, 0.11231393775372124, 0.10554803788903924, 0.10554803788903924, 0.10554803788903924, 0.10690121786197564, 0.10690121786197564, 0.10690121786197564, 0.10825439783491204, 0.11096075778078485, 0.11231393775372124, 0.11772665764546685, 0.12313937753721245, 0.12584573748308525, 0.12584573748308525, 0.13531799729364005, 0.14884979702300405, 0.15426251691474965, 0.15832205683355885, 0.17726657645466848, 0.2029769959404601, 0.2489851150202977, 0.3193504736129905, 0.564276048714479], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/TnpW.gap.json b/pfam_gap_rates/TnpW.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..eb7ffb68517e211f181f3f8788bc88dc22155f88
--- /dev/null
+++ b/pfam_gap_rates/TnpW.gap.json
@@ -0,0 +1 @@
+{"family": "TnpW", "n_seqs": 213, "length": 35, "gap_rates": [0.460093896713615, 0.2112676056338028, 0.03755868544600939, 0.018779342723004695, 0.004694835680751174, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.004694835680751174, 0.004694835680751174, 0.0, 0.0, 0.004694835680751174, 0.018779342723004695, 0.018779342723004695, 0.018779342723004695, 0.028169014084507043, 0.028169014084507043, 0.03755868544600939, 0.03755868544600939, 0.03755868544600939, 0.03755868544600939, 0.04225352112676056, 0.04225352112676056, 0.10328638497652583, 0.14084507042253522, 0.1596244131455399], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Topo_C_assoc.gap.json b/pfam_gap_rates/Topo_C_assoc.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..0192c7a3663cf28fe219626fa2b93ea3d4b95b6e
--- /dev/null
+++ b/pfam_gap_rates/Topo_C_assoc.gap.json
@@ -0,0 +1 @@
+{"family": "Topo_C_assoc", "n_seqs": 364, "length": 73, "gap_rates": [0.47527472527472525, 0.10164835164835165, 0.0521978021978022, 0.038461538461538464, 0.027472527472527472, 0.02197802197802198, 0.019230769230769232, 0.01098901098901099, 0.01098901098901099, 0.01098901098901099, 0.01098901098901099, 0.008241758241758242, 0.008241758241758242, 0.008241758241758242, 0.005494505494505495, 0.005494505494505495, 0.005494505494505495, 0.005494505494505495, 0.005494505494505495, 0.005494505494505495, 0.005494505494505495, 0.005494505494505495, 0.005494505494505495, 0.005494505494505495, 0.005494505494505495, 0.005494505494505495, 0.0027472527472527475, 0.0027472527472527475, 0.0027472527472527475, 0.0, 0.0, 0.0, 0.0, 0.0027472527472527475, 0.0027472527472527475, 0.0027472527472527475, 0.0027472527472527475, 0.005494505494505495, 0.008241758241758242, 0.01098901098901099, 0.01098901098901099, 0.01098901098901099, 0.013736263736263736, 0.019230769230769232, 0.024725274725274724, 0.024725274725274724, 0.027472527472527472, 0.03021978021978022, 0.038461538461538464, 0.04395604395604396, 0.046703296703296704, 0.046703296703296704, 0.0521978021978022, 0.0521978021978022, 0.054945054945054944, 0.057692307692307696, 0.057692307692307696, 0.06043956043956044, 0.06043956043956044, 0.06043956043956044, 0.06043956043956044, 0.07692307692307693, 0.07142857142857142, 0.4835164835164835, 0.07692307692307693, 0.09340659340659341, 0.10714285714285714, 0.9313186813186813, 0.9285714285714286, 0.11538461538461539, 0.11263736263736264, 0.1346153846153846, 0.15384615384615385], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Topoisom_I.gap.json b/pfam_gap_rates/Topoisom_I.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e26d65daa72c29fbb8171d710e51beb83d36ed18
--- /dev/null
+++ b/pfam_gap_rates/Topoisom_I.gap.json
@@ -0,0 +1 @@
+{"family": "Topoisom_I", "n_seqs": 688, "length": 253, "gap_rates": [0.6962209302325582, 0.4694767441860465, 0.40261627906976744, 0.29069767441860467, 0.23837209302325582, 0.21220930232558138, 0.1686046511627907, 0.10319767441860465, 0.0872093023255814, 0.07122093023255814, 0.06686046511627906, 0.06686046511627906, 0.06686046511627906, 0.06686046511627906, 0.06686046511627906, 0.06686046511627906, 0.06686046511627906, 0.061046511627906974, 0.059593023255813955, 0.05813953488372093, 0.05232558139534884, 0.05232558139534884, 0.05232558139534884, 0.050872093023255814, 0.050872093023255814, 0.04941860465116279, 0.04941860465116279, 0.04796511627906977, 0.04796511627906977, 0.04796511627906977, 0.04796511627906977, 0.050872093023255814, 0.04941860465116279, 0.04941860465116279, 0.04941860465116279, 0.04796511627906977, 0.046511627906976744, 0.622093023255814, 0.05232558139534884, 0.04796511627906977, 0.050872093023255814, 0.04796511627906977, 0.04796511627906977, 0.04796511627906977, 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\ No newline at end of file
diff --git a/pfam_gap_rates/Topoisom_I_N.gap.json b/pfam_gap_rates/Topoisom_I_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..cc48bff29ec5321aaf47b9045c12ca88b577b6a1
--- /dev/null
+++ b/pfam_gap_rates/Topoisom_I_N.gap.json
@@ -0,0 +1 @@
+{"family": "Topoisom_I_N", "n_seqs": 395, "length": 229, "gap_rates": [0.49873417721518987, 0.10126582278481013, 0.09620253164556962, 0.08860759493670886, 0.0810126582278481, 0.0810126582278481, 0.07848101265822785, 0.0759493670886076, 0.0759493670886076, 0.0759493670886076, 0.07341772151898734, 0.07088607594936709, 0.07088607594936709, 0.07341772151898734, 0.07088607594936709, 0.0759493670886076, 0.07341772151898734, 0.07341772151898734, 0.4177215189873418, 0.4177215189873418, 0.07341772151898734, 0.07341772151898734, 0.07341772151898734, 0.07341772151898734, 0.07341772151898734, 0.06582278481012659, 0.06329113924050633, 0.060759493670886074, 0.060759493670886074, 0.06329113924050633, 0.06329113924050633, 0.06329113924050633, 0.060759493670886074, 0.06582278481012659, 0.06835443037974684, 0.06835443037974684, 0.06835443037974684, 0.06582278481012659, 0.06582278481012659, 0.06329113924050633, 0.06329113924050633, 0.06835443037974684, 0.07088607594936709, 0.07088607594936709, 0.07341772151898734, 0.07341772151898734, 0.0759493670886076, 0.0759493670886076, 0.07341772151898734, 0.06835443037974684, 0.06582278481012659, 0.9468354430379747, 0.06582278481012659, 0.06582278481012659, 0.8658227848101265, 0.06329113924050633, 0.060759493670886074, 0.05822784810126582, 0.05822784810126582, 0.05822784810126582, 0.05822784810126582, 0.05822784810126582, 0.05822784810126582, 0.05822784810126582, 0.05822784810126582, 0.060759493670886074, 0.05822784810126582, 0.05822784810126582, 0.06329113924050633, 0.060759493670886074, 0.05822784810126582, 0.06329113924050633, 0.05569620253164557, 0.05569620253164557, 0.6734177215189874, 0.660759493670886, 0.05063291139240506, 0.05569620253164557, 0.053164556962025315, 0.06329113924050633, 0.060759493670886074, 0.6329113924050633, 0.6759493670886076, 0.789873417721519, 0.8151898734177215, 0.8430379746835444, 0.8177215189873418, 0.810126582278481, 0.7063291139240506, 0.6455696202531646, 0.6329113924050633, 0.060759493670886074, 0.053164556962025315, 0.05063291139240506, 0.053164556962025315, 0.053164556962025315, 0.053164556962025315, 0.053164556962025315, 0.053164556962025315, 0.053164556962025315, 0.053164556962025315, 0.053164556962025315, 0.053164556962025315, 0.053164556962025315, 0.05063291139240506, 0.05063291139240506, 0.05063291139240506, 0.05063291139240506, 0.05569620253164557, 0.05569620253164557, 0.04810126582278481, 0.04810126582278481, 0.04810126582278481, 0.04810126582278481, 0.04810126582278481, 0.05569620253164557, 0.04810126582278481, 0.04810126582278481, 0.04556962025316456, 0.04810126582278481, 0.04810126582278481, 0.053164556962025315, 0.05063291139240506, 0.053164556962025315, 0.05822784810126582, 0.05822784810126582, 0.05822784810126582, 0.05822784810126582, 0.060759493670886074, 0.060759493670886074, 0.060759493670886074, 0.060759493670886074, 0.060759493670886074, 0.06329113924050633, 0.06329113924050633, 0.06329113924050633, 0.06329113924050633, 0.06329113924050633, 0.06835443037974684, 0.06835443037974684, 0.06835443037974684, 0.06835443037974684, 0.06835443037974684, 0.07341772151898734, 0.07088607594936709, 0.07088607594936709, 0.07088607594936709, 0.06582278481012659, 0.06582278481012659, 0.06582278481012659, 0.06582278481012659, 0.06582278481012659, 0.06582278481012659, 0.06582278481012659, 0.06582278481012659, 0.06582278481012659, 0.06582278481012659, 0.06582278481012659, 0.06582278481012659, 0.06582278481012659, 0.06582278481012659, 0.06582278481012659, 0.06582278481012659, 0.06582278481012659, 0.06582278481012659, 0.06582278481012659, 0.06582278481012659, 0.06329113924050633, 0.06582278481012659, 0.06835443037974684, 0.07088607594936709, 0.06329113924050633, 0.060759493670886074, 0.06329113924050633, 0.06329113924050633, 0.06582278481012659, 0.06329113924050633, 0.06329113924050633, 0.06329113924050633, 0.06329113924050633, 0.06329113924050633, 0.06329113924050633, 0.06329113924050633, 0.06329113924050633, 0.06329113924050633, 0.06582278481012659, 0.06329113924050633, 0.06835443037974684, 0.06329113924050633, 0.06582278481012659, 0.06582278481012659, 0.06835443037974684, 0.7417721518987341, 0.06835443037974684, 0.08354430379746836, 0.08354430379746836, 0.08354430379746836, 0.08354430379746836, 0.06582278481012659, 0.06582278481012659, 0.06835443037974684, 0.06835443037974684, 0.06582278481012659, 0.06582278481012659, 0.06582278481012659, 0.06329113924050633, 0.06329113924050633, 0.06329113924050633, 0.06329113924050633, 0.06329113924050633, 0.06582278481012659, 0.06582278481012659, 0.06582278481012659, 0.06582278481012659, 0.06835443037974684, 0.06835443037974684, 0.06835443037974684, 0.06835443037974684, 0.06835443037974684, 0.06835443037974684, 0.8582278481012658, 0.07341772151898734, 0.0759493670886076, 0.07341772151898734, 0.0759493670886076, 0.0810126582278481, 0.0810126582278481, 0.08354430379746836, 0.15443037974683543], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Toprim_Crpt.gap.json b/pfam_gap_rates/Toprim_Crpt.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..1ebe7e9a749e9484c323ba5a12716f2be7f44b63
--- /dev/null
+++ b/pfam_gap_rates/Toprim_Crpt.gap.json
@@ -0,0 +1 @@
+{"family": "Toprim_Crpt", "n_seqs": 482, "length": 66, "gap_rates": [0.1970954356846473, 0.08713692946058091, 0.03319502074688797, 0.014522821576763486, 0.006224066390041493, 0.006224066390041493, 0.006224066390041493, 0.006224066390041493, 0.09336099585062241, 0.004149377593360996, 0.004149377593360996, 0.004149377593360996, 0.004149377593360996, 0.004149377593360996, 0.004149377593360996, 0.004149377593360996, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.002074688796680498, 0.0, 0.0, 0.01037344398340249, 0.0, 0.0, 0.002074688796680498, 0.008298755186721992, 0.002074688796680498, 0.05186721991701245, 0.7904564315352697, 0.0, 0.0, 0.022821576763485476, 0.004149377593360996, 0.004149377593360996, 0.006224066390041493, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.002074688796680498, 0.0, 0.0, 0.008298755186721992, 0.008298755186721992, 0.18672199170124482, 0.7780082987551867, 0.8132780082987552, 0.8651452282157677, 0.8008298755186722, 0.6265560165975104, 0.012448132780082987, 0.016597510373443983, 0.01867219917012448, 0.043568464730290454, 0.056016597510373446, 0.27800829875518673], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/TraG-D_C.gap.json b/pfam_gap_rates/TraG-D_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..4242200d41a84a42d50bdc322f2abaf35a37eb8d
--- /dev/null
+++ b/pfam_gap_rates/TraG-D_C.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/TraG_N.gap.json b/pfam_gap_rates/TraG_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..588c11a4c625f49b0738274fb6da3091c9a4fe0f
--- /dev/null
+++ b/pfam_gap_rates/TraG_N.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Transketolase_C.gap.json b/pfam_gap_rates/Transketolase_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f7b389e947beda98cda32cd09f94c277c490d5e8
--- /dev/null
+++ b/pfam_gap_rates/Transketolase_C.gap.json
@@ -0,0 +1 @@
+{"family": "Transketolase_C", "n_seqs": 5000, "length": 128, "gap_rates": [0.464, 0.3548, 0.3122, 0.274, 0.2478, 0.2172, 0.1792, 0.134, 0.9394, 0.065, 0.0374, 0.025, 0.0218, 0.0112, 0.0104, 0.01, 0.0098, 0.0098, 0.0094, 0.0094, 0.0086, 0.0084, 0.0082, 0.0076, 0.007, 0.007, 0.0074, 0.0078, 0.0084, 0.0144, 0.0178, 0.0222, 0.0568, 0.0762, 0.0708, 0.877, 0.0656, 0.0474, 0.018, 0.005, 0.0046, 0.0044, 0.004, 0.004, 0.0034, 0.0034, 0.0036, 0.0044, 0.0048, 0.0046, 0.0046, 0.0062, 0.011, 0.0072, 0.0086, 0.0094, 0.0174, 0.2698, 0.229, 0.2276, 0.2272, 0.2256, 0.0646, 0.0176, 0.016, 0.0178, 0.0174, 0.0198, 0.0188, 0.0176, 0.0186, 0.029, 0.0222, 0.0204, 0.073, 0.0224, 0.0218, 0.0224, 0.0318, 0.0316, 0.0252, 0.0248, 0.0248, 0.0236, 0.0244, 0.0236, 0.0252, 0.027, 0.9386, 0.592, 0.5924, 0.4394, 0.2524, 0.0952, 0.059, 0.0516, 0.0478, 0.0428, 0.0436, 0.045, 0.0452, 0.0438, 0.0814, 0.0802, 0.0782, 0.1442, 0.1438, 0.537, 0.132, 0.134, 0.0618, 0.0616, 0.0662, 0.3368, 0.1072, 0.084, 0.0796, 0.074, 0.0738, 0.076, 0.0786, 0.0816, 0.087, 0.0938, 0.1066, 0.1354, 0.1958, 0.2856], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Transpos_assoc.gap.json b/pfam_gap_rates/Transpos_assoc.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..db27d38db3a7d48bb086a599c15a8283956c26cb
--- /dev/null
+++ b/pfam_gap_rates/Transpos_assoc.gap.json
@@ -0,0 +1 @@
+{"family": "Transpos_assoc", "n_seqs": 342, "length": 81, "gap_rates": [0.2982456140350877, 0.2046783625730994, 0.195906432748538, 0.1608187134502924, 0.2543859649122807, 0.8421052631578947, 0.9327485380116959, 0.8333333333333334, 0.4853801169590643, 0.14619883040935672, 0.13742690058479531, 0.1023391812865497, 0.09941520467836257, 0.09064327485380116, 0.08771929824561403, 0.08187134502923976, 0.08187134502923976, 0.08187134502923976, 0.07894736842105263, 0.07894736842105263, 0.07602339181286549, 0.07602339181286549, 0.07309941520467836, 0.06432748538011696, 0.06432748538011696, 0.06432748538011696, 0.06432748538011696, 0.06432748538011696, 0.06432748538011696, 0.06432748538011696, 0.5584795321637427, 0.6023391812865497, 0.5467836257309941, 0.06725146198830409, 0.05263157894736842, 0.05263157894736842, 0.05263157894736842, 0.05263157894736842, 0.05263157894736842, 0.04678362573099415, 0.043859649122807015, 0.04093567251461988, 0.03508771929824561, 0.03508771929824561, 0.02046783625730994, 0.023391812865497075, 0.029239766081871343, 0.023391812865497075, 0.02046783625730994, 0.017543859649122806, 0.017543859649122806, 0.017543859649122806, 0.9444444444444444, 0.32456140350877194, 0.02046783625730994, 0.023391812865497075, 0.02046783625730994, 0.02046783625730994, 0.02046783625730994, 0.023391812865497075, 0.023391812865497075, 0.029239766081871343, 0.029239766081871343, 0.03216374269005848, 0.03216374269005848, 0.03508771929824561, 0.04093567251461988, 0.04678362573099415, 0.04678362573099415, 0.043859649122807015, 0.043859649122807015, 0.043859649122807015, 0.043859649122807015, 0.043859649122807015, 0.04678362573099415, 0.05263157894736842, 0.05263157894736842, 0.05263157894736842, 0.05555555555555555, 0.05847953216374269, 0.07309941520467836], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Transposase_1.gap.json b/pfam_gap_rates/Transposase_1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..5438baa7b4a1098fc3a7678efb91924fa5bc78b2
--- /dev/null
+++ b/pfam_gap_rates/Transposase_1.gap.json
@@ -0,0 +1 @@
+{"family": "Transposase_1", "n_seqs": 410, "length": 81, "gap_rates": [0.7219512195121951, 0.5121951219512195, 0.4658536585365854, 0.44878048780487806, 0.4317073170731707, 0.3975609756097561, 0.3878048780487805, 0.3804878048780488, 0.3780487804878049, 0.37073170731707317, 0.35609756097560974, 0.8512195121951219, 0.348780487804878, 0.33414634146341465, 0.32195121951219513, 0.3146341463414634, 0.3097560975609756, 0.3048780487804878, 0.2975609756097561, 0.2926829268292683, 0.28780487804878047, 0.2780487804878049, 0.2731707317073171, 0.2658536585365854, 0.28780487804878047, 0.3, 0.22439024390243903, 0.2073170731707317, 0.2073170731707317, 0.20243902439024392, 0.1975609756097561, 0.18536585365853658, 0.11463414634146342, 0.08048780487804878, 0.07073170731707316, 0.07560975609756097, 0.06585365853658537, 0.06829268292682927, 0.05121951219512195, 0.046341463414634146, 0.041463414634146344, 0.05121951219512195, 0.05121951219512195, 0.04390243902439024, 0.046341463414634146, 0.03902439024390244, 0.036585365853658534, 0.03902439024390244, 0.046341463414634146, 0.05121951219512195, 0.05121951219512195, 0.06341463414634146, 0.06341463414634146, 0.06585365853658537, 0.07317073170731707, 0.07804878048780488, 0.09268292682926829, 0.1048780487804878, 0.12682926829268293, 0.13902439024390245, 0.14146341463414633, 0.14878048780487804, 0.16585365853658537, 0.16829268292682928, 0.17317073170731706, 0.17804878048780487, 0.1975609756097561, 0.2097560975609756, 0.3, 0.3048780487804878, 0.3146341463414634, 0.3195121951219512, 0.33414634146341465, 0.33658536585365856, 0.35121951219512193, 0.36829268292682926, 0.3878048780487805, 0.47073170731707314, 0.5829268292682926, 0.7365853658536585, 0.8195121951219512], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Trehalose_recp.gap.json b/pfam_gap_rates/Trehalose_recp.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..1dd708776a054567acf461171acd262dfe3def2b
--- /dev/null
+++ b/pfam_gap_rates/Trehalose_recp.gap.json
@@ -0,0 +1 @@
+{"family": "Trehalose_recp", "n_seqs": 120, "length": 414, "gap_rates": [0.9416666666666667, 0.9166666666666666, 0.9083333333333333, 0.9, 0.8666666666666667, 0.8666666666666667, 0.85, 0.8416666666666667, 0.7833333333333333, 0.7333333333333333, 0.65, 0.6, 0.5416666666666666, 0.5166666666666667, 0.5083333333333333, 0.5, 0.5, 0.5, 0.49166666666666664, 0.475, 0.4666666666666667, 0.475, 0.4583333333333333, 0.4583333333333333, 0.44166666666666665, 0.425, 0.425, 0.425, 0.425, 0.425, 0.425, 0.4083333333333333, 0.4083333333333333, 0.4083333333333333, 0.4, 0.4083333333333333, 0.425, 0.425, 0.44166666666666665, 0.43333333333333335, 0.43333333333333335, 0.4166666666666667, 0.4166666666666667, 0.39166666666666666, 0.39166666666666666, 0.39166666666666666, 0.39166666666666666, 0.38333333333333336, 0.39166666666666666, 0.39166666666666666, 0.38333333333333336, 0.38333333333333336, 0.38333333333333336, 0.38333333333333336, 0.38333333333333336, 0.38333333333333336, 0.38333333333333336, 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\ No newline at end of file
diff --git a/pfam_gap_rates/Trep_Strep.gap.json b/pfam_gap_rates/Trep_Strep.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..738c679f406ad4298140ccddf2bfe86297750e80
--- /dev/null
+++ b/pfam_gap_rates/Trep_Strep.gap.json
@@ -0,0 +1 @@
+{"family": "Trep_Strep", "n_seqs": 395, "length": 192, "gap_rates": [0.5139240506329114, 0.07848101265822785, 0.060759493670886074, 0.04050632911392405, 0.04050632911392405, 0.04050632911392405, 0.04050632911392405, 0.0379746835443038, 0.0379746835443038, 0.035443037974683546, 0.03291139240506329, 0.030379746835443037, 0.027848101265822784, 0.02531645569620253, 0.02531645569620253, 0.02531645569620253, 0.02531645569620253, 0.02531645569620253, 0.020253164556962026, 0.020253164556962026, 0.020253164556962026, 0.020253164556962026, 0.020253164556962026, 0.7164556962025317, 0.02278481012658228, 0.02531645569620253, 0.017721518987341773, 0.017721518987341773, 0.9189873417721519, 0.389873417721519, 0.04050632911392405, 0.04050632911392405, 0.02278481012658228, 0.017721518987341773, 0.017721518987341773, 0.017721518987341773, 0.017721518987341773, 0.020253164556962026, 0.017721518987341773, 0.017721518987341773, 0.020253164556962026, 0.015189873417721518, 0.015189873417721518, 0.015189873417721518, 0.015189873417721518, 0.015189873417721518, 0.015189873417721518, 0.015189873417721518, 0.015189873417721518, 0.012658227848101266, 0.012658227848101266, 0.012658227848101266, 0.015189873417721518, 0.017721518987341773, 0.017721518987341773, 0.017721518987341773, 0.020253164556962026, 0.020253164556962026, 0.020253164556962026, 0.020253164556962026, 0.020253164556962026, 0.020253164556962026, 0.020253164556962026, 0.020253164556962026, 0.017721518987341773, 0.017721518987341773, 0.017721518987341773, 0.017721518987341773, 0.020253164556962026, 0.020253164556962026, 0.020253164556962026, 0.020253164556962026, 0.030379746835443037, 0.02531645569620253, 0.09620253164556962, 0.0759493670886076, 0.0810126582278481, 0.07341772151898734, 0.8987341772151899, 0.2683544303797468, 0.02278481012658228, 0.020253164556962026, 0.020253164556962026, 0.02278481012658228, 0.02531645569620253, 0.02278481012658228, 0.02278481012658228, 0.02278481012658228, 0.02531645569620253, 0.02278481012658228, 0.02278481012658228, 0.02278481012658228, 0.02278481012658228, 0.02278481012658228, 0.02278481012658228, 0.02278481012658228, 0.02278481012658228, 0.02278481012658228, 0.07088607594936709, 0.07088607594936709, 0.027848101265822784, 0.04810126582278481, 0.8151898734177215, 0.0379746835443038, 0.0379746835443038, 0.027848101265822784, 0.02531645569620253, 0.03291139240506329, 0.027848101265822784, 0.02278481012658228, 0.020253164556962026, 0.020253164556962026, 0.020253164556962026, 0.020253164556962026, 0.020253164556962026, 0.020253164556962026, 0.020253164556962026, 0.6, 0.027848101265822784, 0.027848101265822784, 0.035443037974683546, 0.035443037974683546, 0.035443037974683546, 0.035443037974683546, 0.035443037974683546, 0.0379746835443038, 0.043037974683544304, 0.04556962025316456, 0.043037974683544304, 0.043037974683544304, 0.043037974683544304, 0.9417721518987342, 0.043037974683544304, 0.04810126582278481, 0.053164556962025315, 0.05063291139240506, 0.05063291139240506, 0.05063291139240506, 0.05063291139240506, 0.05063291139240506, 0.06582278481012659, 0.2810126582278481, 0.24050632911392406, 0.1240506329113924, 0.05822784810126582, 0.053164556962025315, 0.053164556962025315, 0.06582278481012659, 0.05822784810126582, 0.05822784810126582, 0.053164556962025315, 0.053164556962025315, 0.05569620253164557, 0.05569620253164557, 0.053164556962025315, 0.053164556962025315, 0.053164556962025315, 0.05822784810126582, 0.7822784810126582, 0.053164556962025315, 0.053164556962025315, 0.053164556962025315, 0.053164556962025315, 0.053164556962025315, 0.053164556962025315, 0.053164556962025315, 0.053164556962025315, 0.053164556962025315, 0.053164556962025315, 0.053164556962025315, 0.053164556962025315, 0.053164556962025315, 0.053164556962025315, 0.053164556962025315, 0.053164556962025315, 0.053164556962025315, 0.05569620253164557, 0.05569620253164557, 0.05569620253164557, 0.05569620253164557, 0.05569620253164557, 0.05822784810126582, 0.05822784810126582, 0.05822784810126582, 0.05822784810126582, 0.05822784810126582, 0.06329113924050633, 0.07088607594936709, 0.0810126582278481, 0.10379746835443038, 0.1341772151898734, 0.22025316455696203], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/TrmE_N.gap.json b/pfam_gap_rates/TrmE_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..0f061be52ecc20a8425b433b0a3e426b03b392ea
--- /dev/null
+++ b/pfam_gap_rates/TrmE_N.gap.json
@@ -0,0 +1 @@
+{"family": "TrmE_N", "n_seqs": 1901, "length": 130, "gap_rates": [0.12730142030510258, 0.05944239873750658, 0.05365597054182009, 0.05365597054182009, 0.05312993161493951, 0.05312993161493951, 0.05102577590741715, 0.051551814834297736, 0.048921620199894794, 0.04471330878485008, 0.07259337190952131, 0.04471330878485008, 0.0436612309310889, 0.0436612309310889, 0.042609153077327724, 0.041557075223566546, 0.03945291951604419, 0.03945291951604419, 0.03840084166228301, 0.03787480273540242, 0.03787480273540242, 0.03787480273540242, 0.03787480273540242, 0.036296685954760655, 0.036296685954760655, 0.0389268805891636, 0.036296685954760655, 0.03682272488164124, 0.036296685954760655, 0.03734876380852183, 0.03577064702788006, 0.03682272488164124, 0.07364544976328248, 0.3550762756443977, 0.46975276170436614, 0.6896370331404524, 0.8932140978432404, 0.9484481851657023, 0.7264597580220936, 0.6054708048395582, 0.43029984218832196, 0.2772225144660705, 0.06943713834823777, 0.036296685954760655, 0.05049973698053656, 0.039978958442924775, 0.03156233561283535, 0.027880063124671225, 0.027354024197790636, 0.027354024197790636, 0.026827985270910047, 0.026301946344029457, 0.0241977906365071, 0.02472382956338769, 0.0241977906365071, 0.026827985270910047, 0.05312993161493951, 0.14255654918463967, 0.5307732772225144, 0.9452919516044187, 0.9337190952130457, 0.14518674381904262, 0.021041557075223566, 0.03103629668595476, 0.026301946344029457, 0.01262493424513414, 0.013150973172014729, 0.013677012098895318, 0.01262493424513414, 0.011046817464492372, 0.011572856391372961, 0.010520778537611783, 0.009994739610731194, 0.014729089952656496, 0.010520778537611783, 0.009994739610731194, 0.009994739610731194, 0.011572856391372961, 0.01209889531825355, 0.013677012098895318, 0.013150973172014729, 0.01209889531825355, 0.009994739610731194, 0.008942661756970016, 0.007890583903208837, 0.006838506049447659, 0.006838506049447659, 0.006838506049447659, 0.006838506049447659, 0.006838506049447659, 0.006838506049447659, 0.006838506049447659, 0.006838506049447659, 0.007890583903208837, 0.009468700683850605, 0.009468700683850605, 0.008942661756970016, 0.007890583903208837, 0.007890583903208837, 0.007890583903208837, 0.007890583903208837, 0.007364544976328248, 0.007364544976328248, 0.007364544976328248, 0.051551814834297736, 0.041031036296685953, 0.011046817464492372, 0.8684902682798528, 0.9247764334560757, 0.9210941609679116, 0.7417148869016307, 0.01209889531825355, 0.013677012098895318, 0.015781167806417674, 0.015781167806417674, 0.015781167806417674, 0.017359284587059442, 0.017359284587059442, 0.01841136244082062, 0.01841136244082062, 0.0194634402945818, 0.0194634402945818, 0.0194634402945818, 0.019989479221462388, 0.021041557075223566, 0.021567596002104155, 0.022093634928984744, 0.02367175170962651, 0.02367175170962651, 0.05102577590741715], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Trp_halogenase.gap.json b/pfam_gap_rates/Trp_halogenase.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..8e7fd6dc91152d7140ac4eb9ec9402302479d6ef
--- /dev/null
+++ b/pfam_gap_rates/Trp_halogenase.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Trp_syntA.gap.json b/pfam_gap_rates/Trp_syntA.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..86a823dd86a01f40d6c9fb3848bd8abd4827dc90
--- /dev/null
+++ b/pfam_gap_rates/Trp_syntA.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/TruB_C.gap.json b/pfam_gap_rates/TruB_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..cfb6c726a4fecbb4cb92b2589b970d359425d543
--- /dev/null
+++ b/pfam_gap_rates/TruB_C.gap.json
@@ -0,0 +1 @@
+{"family": "TruB_C", "n_seqs": 193, "length": 65, "gap_rates": [0.14507772020725387, 0.06217616580310881, 0.046632124352331605, 0.025906735751295335, 0.015544041450777202, 0.015544041450777202, 0.015544041450777202, 0.015544041450777202, 0.015544041450777202, 0.010362694300518135, 0.010362694300518135, 0.010362694300518135, 0.010362694300518135, 0.0051813471502590676, 0.0051813471502590676, 0.0051813471502590676, 0.0051813471502590676, 0.0051813471502590676, 0.0051813471502590676, 0.0051813471502590676, 0.0051813471502590676, 0.0051813471502590676, 0.04145077720207254, 0.6528497409326425, 0.8808290155440415, 0.9378238341968912, 0.917098445595855, 0.7823834196891192, 0.5025906735751295, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0051813471502590676, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.9015544041450777, 0.9326424870466321, 0.8963730569948186, 0.0, 0.0, 0.010362694300518135, 0.010362694300518135, 0.010362694300518135, 0.015544041450777202, 0.015544041450777202, 0.02072538860103627, 0.025906735751295335, 0.025906735751295335, 0.025906735751295335, 0.04145077720207254, 0.05699481865284974, 0.5595854922279793], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Tryp_alpha_amyl.gap.json b/pfam_gap_rates/Tryp_alpha_amyl.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..7433ad2b9a6b95f3448af9f53ed5efb7471a4267
--- /dev/null
+++ b/pfam_gap_rates/Tryp_alpha_amyl.gap.json
@@ -0,0 +1 @@
+{"family": "Tryp_alpha_amyl", "n_seqs": 456, "length": 135, "gap_rates": [0.36622807017543857, 0.35526315789473684, 0.3618421052631579, 0.3530701754385965, 0.36403508771929827, 0.4166666666666667, 0.45394736842105265, 0.8574561403508771, 0.756578947368421, 0.7390350877192983, 0.7368421052631579, 0.7697368421052632, 0.7127192982456141, 0.9013157894736842, 0.9342105263157895, 0.9232456140350878, 0.8947368421052632, 0.5964912280701754, 0.506578947368421, 0.11842105263157894, 0.10087719298245613, 0.08552631578947369, 0.07894736842105263, 0.07675438596491228, 0.06798245614035088, 0.06140350877192982, 0.06359649122807018, 0.06359649122807018, 0.06798245614035088, 0.1513157894736842, 0.22807017543859648, 0.03289473684210526, 0.8486842105263158, 0.8947368421052632, 0.9122807017543859, 0.9451754385964912, 0.9364035087719298, 0.8991228070175439, 0.8837719298245614, 0.7850877192982456, 0.08333333333333333, 0.017543859649122806, 0.010964912280701754, 0.010964912280701754, 0.006578947368421052, 0.0043859649122807015, 0.0043859649122807015, 0.0043859649122807015, 0.0043859649122807015, 0.0043859649122807015, 0.0043859649122807015, 0.008771929824561403, 0.0021929824561403508, 0.3333333333333333, 0.3442982456140351, 0.36403508771929827, 0.3684210526315789, 0.5307017543859649, 0.5285087719298246, 0.36622807017543857, 0.36403508771929827, 0.3333333333333333, 0.2807017543859649, 0.0021929824561403508, 0.0021929824561403508, 0.0021929824561403508, 0.0021929824561403508, 0.0021929824561403508, 0.0021929824561403508, 0.017543859649122806, 0.021929824561403508, 0.013157894736842105, 0.008771929824561403, 0.07236842105263158, 0.06798245614035088, 0.021929824561403508, 0.03508771929824561, 0.13815789473684212, 0.6008771929824561, 0.7192982456140351, 0.7214912280701754, 0.7171052631578947, 0.7149122807017544, 0.7149122807017544, 0.8289473684210527, 0.8333333333333334, 0.8530701754385965, 0.8728070175438597, 0.8859649122807017, 0.9254385964912281, 0.9451754385964912, 0.9473684210526315, 0.9473684210526315, 0.9451754385964912, 0.9320175438596491, 0.9013157894736842, 0.8859649122807017, 0.8552631578947368, 0.8486842105263158, 0.831140350877193, 0.8048245614035088, 0.7171052631578947, 0.7017543859649122, 0.6929824561403509, 0.6754385964912281, 0.6030701754385965, 0.3881578947368421, 0.10526315789473684, 0.03728070175438596, 0.03728070175438596, 0.03508771929824561, 0.03728070175438596, 0.03728070175438596, 0.03728070175438596, 0.03728070175438596, 0.03728070175438596, 0.03728070175438596, 0.03728070175438596, 0.03728070175438596, 0.039473684210526314, 0.039473684210526314, 0.041666666666666664, 0.04824561403508772, 0.05482456140350877, 0.06359649122807018, 0.08991228070175439, 0.13596491228070176, 0.5175438596491229, 0.5241228070175439, 0.5241228070175439, 0.5241228070175439, 0.5, 0.49780701754385964, 0.48026315789473684, 0.43201754385964913], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Trypsin.gap.json b/pfam_gap_rates/Trypsin.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e6ef0bdb6944640ccb498663a6aa24c55b278ed3
--- /dev/null
+++ b/pfam_gap_rates/Trypsin.gap.json
@@ -0,0 +1 @@
+{"family": "Trypsin", "n_seqs": 5000, "length": 281, "gap_rates": [0.5146, 0.4574, 0.4228, 0.4072, 0.3924, 0.3776, 0.358, 0.3424, 0.329, 0.3066, 0.2924, 0.2778, 0.2722, 0.2642, 0.2546, 0.2486, 0.2448, 0.2404, 0.2354, 0.2316, 0.2358, 0.2324, 0.4856, 0.666, 0.8278, 0.9434, 0.8896, 0.7246, 0.604, 0.2674, 0.219, 0.2048, 0.1856, 0.1832, 0.18, 0.1798, 0.1798, 0.178, 0.1734, 0.1698, 0.1692, 0.1668, 0.1662, 0.1652, 0.165, 0.1642, 0.1634, 0.1622, 0.1606, 0.1602, 0.1624, 0.1708, 0.4458, 0.719, 0.8216, 0.8952, 0.9416, 0.9322, 0.8602, 0.7834, 0.6188, 0.394, 0.2734, 0.2686, 0.214, 0.193, 0.2012, 0.1792, 0.9434, 0.204, 0.1916, 0.1772, 0.1906, 0.879, 0.321, 0.291, 0.2012, 0.1802, 0.1692, 0.1652, 0.1662, 0.1768, 0.3382, 0.8882, 0.9458, 0.8442, 0.3592, 0.186, 0.1556, 0.1476, 0.144, 0.1426, 0.1424, 0.1432, 0.945, 0.177, 0.1606, 0.1568, 0.1828, 0.168, 0.1628, 0.1514, 0.1448, 0.1416, 0.145, 0.1528, 0.8966, 0.2258, 0.8582, 0.9362, 0.949, 0.9104, 0.842, 0.1882, 0.1448, 0.132, 0.1288, 0.1276, 0.1272, 0.1268, 0.1266, 0.1274, 0.1274, 0.1278, 0.1354, 0.9462, 0.925, 0.244, 0.2156, 0.1736, 0.1522, 0.1346, 0.1322, 0.1334, 0.136, 0.1322, 0.1314, 0.1314, 0.1306, 0.1312, 0.1312, 0.8738, 0.9144, 0.8382, 0.312, 0.2328, 0.189, 0.3134, 0.278, 0.8772, 0.156, 0.1452, 0.142, 0.1806, 0.1418, 0.137, 0.1346, 0.1338, 0.1338, 0.1338, 0.1352, 0.1348, 0.135, 0.1428, 0.1748, 0.1802, 0.1784, 0.1688, 0.6966, 0.9292, 0.864, 0.4116, 0.2558, 0.2344, 0.1988, 0.1718, 0.1636, 0.1616, 0.1694, 0.1626, 0.1588, 0.1566, 0.1534, 0.1522, 0.1624, 0.1576, 0.1568, 0.1748, 0.1686, 0.1606, 0.1592, 0.1594, 0.22, 0.7694, 0.911, 0.6864, 0.2554, 0.3032, 0.2882, 0.2324, 0.7238, 0.8058, 0.881, 0.938, 0.9046, 0.8422, 0.77, 0.649, 0.1866, 0.1802, 0.165, 0.1594, 0.155, 0.1522, 0.1518, 0.1516, 0.1528, 0.1562, 0.5058, 0.934, 0.3606, 0.2206, 0.2014, 0.9448, 0.1956, 0.1788, 0.1762, 0.1714, 0.1708, 0.1688, 0.1692, 0.1672, 0.167, 0.1674, 0.1674, 0.1668, 0.1676, 0.1684, 0.1696, 0.1718, 0.1726, 0.4066, 0.69, 0.8942, 0.9302, 0.823, 0.4192, 0.3856, 0.366, 0.182, 0.1814, 0.1814, 0.1824, 0.186, 0.1888, 0.1922, 0.1978, 0.9082, 0.7482, 0.2188, 0.216, 0.215, 0.2208, 0.224, 0.2308, 0.4066, 0.3162, 0.2906, 0.2512, 0.2498, 0.2492, 0.2516, 0.255, 0.2598, 0.2676, 0.2868, 0.2944, 0.3052, 0.318, 0.328, 0.3492], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Tubulin-binding.gap.json b/pfam_gap_rates/Tubulin-binding.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..fce89f9fe53c7a430154f48c7953cd3db6b32eb4
--- /dev/null
+++ b/pfam_gap_rates/Tubulin-binding.gap.json
@@ -0,0 +1 @@
+{"family": "Tubulin-binding", "n_seqs": 519, "length": 33, "gap_rates": [0.41811175337186895, 0.23121387283236994, 0.1907514450867052, 0.18689788053949905, 0.1599229287090559, 0.1464354527938343, 0.13872832369942195, 0.1348747591522158, 0.05973025048169557, 0.9036608863198459, 0.036608863198458574, 0.2697495183044316, 0.7842003853564548, 0.015414258188824663, 0.0038535645472061657, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.028901734104046242, 0.005780346820809248, 0.005780346820809248, 0.009633911368015413, 0.009633911368015413, 0.009633911368015413, 0.009633911368015413, 0.030828516377649325, 0.04431599229287091, 0.04816955684007707, 0.2813102119460501], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Tubulin_2.gap.json b/pfam_gap_rates/Tubulin_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..fbc6ec9719d16df313401ed1a4e2bf881e213447
--- /dev/null
+++ b/pfam_gap_rates/Tubulin_2.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/U6-snRNA_bdg.gap.json b/pfam_gap_rates/U6-snRNA_bdg.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ba4da2c11b07c761e6644012f53cc0d8f8c73af0
--- /dev/null
+++ b/pfam_gap_rates/U6-snRNA_bdg.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/UDPGP.gap.json b/pfam_gap_rates/UDPGP.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..1cc40fb736ee0b56628b53f8e66de5ecdc63dd74
--- /dev/null
+++ b/pfam_gap_rates/UDPGP.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/UDPG_MGDP_dh_N.gap.json b/pfam_gap_rates/UDPG_MGDP_dh_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..3365f24d755737327f1947fb56de834b1ba760df
--- /dev/null
+++ b/pfam_gap_rates/UDPG_MGDP_dh_N.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/UN_NPL4.gap.json b/pfam_gap_rates/UN_NPL4.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..3181dfe8d570a5f1cdf33fe45a9a666a8a3d3e3f
--- /dev/null
+++ b/pfam_gap_rates/UN_NPL4.gap.json
@@ -0,0 +1 @@
+{"family": "UN_NPL4", "n_seqs": 168, "length": 89, "gap_rates": [0.8928571428571429, 0.875, 0.8214285714285714, 0.6904761904761905, 0.13690476190476192, 0.05357142857142857, 0.02976190476190476, 0.02976190476190476, 0.023809523809523808, 0.023809523809523808, 0.017857142857142856, 0.011904761904761904, 0.011904761904761904, 0.011904761904761904, 0.005952380952380952, 0.005952380952380952, 0.005952380952380952, 0.005952380952380952, 0.005952380952380952, 0.005952380952380952, 0.0, 0.9047619047619048, 0.0, 0.0, 0.0, 0.0, 0.005952380952380952, 0.005952380952380952, 0.005952380952380952, 0.0, 0.0, 0.005952380952380952, 0.005952380952380952, 0.005952380952380952, 0.005952380952380952, 0.005952380952380952, 0.005952380952380952, 0.0, 0.0, 0.0, 0.0, 0.05952380952380952, 0.02976190476190476, 0.8095238095238095, 0.011904761904761904, 0.005952380952380952, 0.005952380952380952, 0.0, 0.005952380952380952, 0.0, 0.005952380952380952, 0.9345238095238095, 0.005952380952380952, 0.017857142857142856, 0.9345238095238095, 0.9464285714285714, 0.9345238095238095, 0.023809523809523808, 0.017857142857142856, 0.9404761904761905, 0.9345238095238095, 0.02976190476190476, 0.023809523809523808, 0.023809523809523808, 0.17857142857142858, 0.14285714285714285, 0.047619047619047616, 0.9404761904761905, 0.03571428571428571, 0.9464285714285714, 0.03571428571428571, 0.03571428571428571, 0.02976190476190476, 0.02976190476190476, 0.023809523809523808, 0.03571428571428571, 0.023809523809523808, 0.023809523809523808, 0.023809523809523808, 0.02976190476190476, 0.02976190476190476, 0.02976190476190476, 0.02976190476190476, 0.02976190476190476, 0.03571428571428571, 0.07142857142857142, 0.14285714285714285, 0.4166666666666667, 0.7738095238095238], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/UPF0047.gap.json b/pfam_gap_rates/UPF0047.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d39ea1840582db9a722d56532119699945f09329
--- /dev/null
+++ b/pfam_gap_rates/UPF0047.gap.json
@@ -0,0 +1 @@
+{"family": "UPF0047", "n_seqs": 1613, "length": 136, "gap_rates": [0.3986360818350899, 0.0929944203347799, 0.069435833849969, 0.06695598264104154, 0.059516429014259145, 0.05579665220086795, 0.05455672659640422, 0.05455672659640422, 0.05393676379417235, 0.07997520148791072, 0.08245505269683819, 0.06695598264104154, 0.7774333539987601, 0.05765654060756355, 0.05455672659640422, 0.04959702417854929, 0.03781773093614383, 0.035337879727216366, 0.0328580285182889, 0.029758214507129573, 0.026658400495970243, 0.02541847489150651, 0.024798512089274645, 0.022938623682579044, 0.02045877247365158, 0.017978921264724116, 0.017978921264724116, 0.017978921264724116, 0.017978921264724116, 0.017978921264724116, 0.017978921264724116, 0.017978921264724116, 0.016738995660260384, 0.015499070055796652, 0.015499070055796652, 0.016119032858028518, 0.016119032858028518, 0.3558586484810911, 0.017978921264724116, 0.01735895846249225, 0.016738995660260384, 0.01735895846249225, 0.016738995660260384, 0.016738995660260384, 0.01735895846249225, 0.016119032858028518, 0.015499070055796652, 0.015499070055796652, 0.015499070055796652, 0.015499070055796652, 0.016119032858028518, 0.016119032858028518, 0.014879107253564786, 0.015499070055796652, 0.01425914445133292, 0.01425914445133292, 0.017978921264724116, 0.5195288282703038, 0.8648481091134532, 0.9380037197768134, 0.9200247985120893, 0.7557346559206448, 0.06819590824550527, 0.024798512089274645, 0.024798512089274645, 0.02417854928704278, 0.022318660880347178, 0.022318660880347178, 0.8871667699938004, 0.9299442033477991, 0.9373837569745815, 0.9442033477991321, 0.9392436453812771, 0.9342839429634222, 0.8915065096094235, 0.8642281463112214, 0.3137011779293242, 0.07997520148791072, 0.06323620582765034, 0.2665840049597024, 0.23620582765034098, 0.021078735275883446, 0.018598884066955982, 0.018598884066955982, 0.018598884066955982, 0.019218846869187848, 0.019838809671419714, 0.021078735275883446, 0.021078735275883446, 0.02169869807811531, 0.02045877247365158, 0.02045877247365158, 0.019838809671419714, 0.02045877247365158, 0.02045877247365158, 0.021078735275883446, 0.02045877247365158, 0.02045877247365158, 0.02169869807811531, 0.02169869807811531, 0.02169869807811531, 0.02169869807811531, 0.02045877247365158, 0.02045877247365158, 0.02045877247365158, 0.021078735275883446, 0.02045877247365158, 0.02045877247365158, 0.02045877247365158, 0.02169869807811531, 0.02169869807811531, 0.023558586484810913, 0.026658400495970243, 0.029758214507129573, 0.029758214507129573, 0.03037817730936144, 0.03037817730936144, 0.030998140111593304, 0.0750154990700558, 0.7234965902045877, 0.13081215127092374, 0.13391196528208307, 0.8747675139491631, 0.09857408555486671, 0.04091754494730316, 0.8840669559826411, 0.9082455052696838, 0.9020458772473652, 0.8350898946063237, 0.04339739615623062, 0.04835709857408556, 0.052076875387476754, 0.06013639181649101, 0.0750154990700558, 0.1921884686918785, 0.6267823930564166], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/UPF0093.gap.json b/pfam_gap_rates/UPF0093.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e2e84cc8f7c3f9af5e591dd5bd00e10051a87f62
--- /dev/null
+++ b/pfam_gap_rates/UPF0093.gap.json
@@ -0,0 +1 @@
+{"family": "UPF0093", "n_seqs": 660, "length": 152, "gap_rates": [0.9378787878787879, 0.8590909090909091, 0.6666666666666666, 0.36818181818181817, 0.2924242424242424, 0.08181818181818182, 0.05909090909090909, 0.03787878787878788, 0.031818181818181815, 0.030303030303030304, 0.02878787878787879, 0.02878787878787879, 0.02727272727272727, 0.025757575757575757, 0.025757575757575757, 0.024242424242424242, 0.021212121212121213, 0.021212121212121213, 0.021212121212121213, 0.015151515151515152, 0.015151515151515152, 0.015151515151515152, 0.015151515151515152, 0.016666666666666666, 0.01818181818181818, 0.019696969696969695, 0.01818181818181818, 0.024242424242424242, 0.021212121212121213, 0.021212121212121213, 0.022727272727272728, 0.01818181818181818, 0.016666666666666666, 0.016666666666666666, 0.01818181818181818, 0.016666666666666666, 0.021212121212121213, 0.01818181818181818, 0.12272727272727273, 0.05, 0.6909090909090909, 0.05909090909090909, 0.10606060606060606, 0.015151515151515152, 0.010606060606060607, 0.012121212121212121, 0.015151515151515152, 0.015151515151515152, 0.8257575757575758, 0.8287878787878787, 0.8272727272727273, 0.8257575757575758, 0.03939393939393939, 0.013636363636363636, 0.012121212121212121, 0.010606060606060607, 0.007575757575757576, 0.006060606060606061, 0.006060606060606061, 0.016666666666666666, 0.0030303030303030303, 0.21212121212121213, 0.015151515151515152, 0.004545454545454545, 0.0030303030303030303, 0.006060606060606061, 0.0030303030303030303, 0.0030303030303030303, 0.004545454545454545, 0.0030303030303030303, 0.0015151515151515152, 0.0015151515151515152, 0.0015151515151515152, 0.0015151515151515152, 0.3984848484848485, 0.03636363636363636, 0.01818181818181818, 0.9409090909090909, 0.010606060606060607, 0.006060606060606061, 0.010606060606060607, 0.04696969696969697, 0.030303030303030304, 0.17424242424242425, 0.20909090909090908, 0.5303030303030303, 0.39090909090909093, 0.06818181818181818, 0.07272727272727272, 0.01818181818181818, 0.0030303030303030303, 0.0030303030303030303, 0.0030303030303030303, 0.0030303030303030303, 0.0030303030303030303, 0.0030303030303030303, 0.0030303030303030303, 0.0030303030303030303, 0.0030303030303030303, 0.0030303030303030303, 0.0030303030303030303, 0.0030303030303030303, 0.0030303030303030303, 0.004545454545454545, 0.0030303030303030303, 0.0030303030303030303, 0.004545454545454545, 0.004545454545454545, 0.004545454545454545, 0.00909090909090909, 0.010606060606060607, 0.012121212121212121, 0.012121212121212121, 0.012121212121212121, 0.012121212121212121, 0.013636363636363636, 0.013636363636363636, 0.016666666666666666, 0.01818181818181818, 0.021212121212121213, 0.031818181818181815, 0.030303030303030304, 0.04242424242424243, 0.03484848484848485, 0.03787878787878788, 0.04242424242424243, 0.04242424242424243, 0.04090909090909091, 0.04090909090909091, 0.04242424242424243, 0.045454545454545456, 0.04393939393939394, 0.04696969696969697, 0.04696969696969697, 0.04242424242424243, 0.04242424242424243, 0.04242424242424243, 0.04242424242424243, 0.04242424242424243, 0.04242424242424243, 0.04242424242424243, 0.04242424242424243, 0.04242424242424243, 0.04242424242424243, 0.04393939393939394, 0.04696969696969697, 0.04696969696969697, 0.05, 0.05454545454545454, 0.06818181818181818, 0.15151515151515152, 0.45], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/UPF0113.gap.json b/pfam_gap_rates/UPF0113.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d083dd6c46c7c13d3822c151c285ac6530796dfb
--- /dev/null
+++ b/pfam_gap_rates/UPF0113.gap.json
@@ -0,0 +1 @@
+{"family": "UPF0113", "n_seqs": 317, "length": 202, "gap_rates": [0.6309148264984227, 0.4384858044164038, 0.4353312302839117, 0.4353312302839117, 0.4353312302839117, 0.4353312302839117, 0.43217665615141954, 0.43217665615141954, 0.42902208201892744, 0.42902208201892744, 0.42586750788643535, 0.42586750788643535, 0.42586750788643535, 0.42586750788643535, 0.42586750788643535, 0.42586750788643535, 0.42586750788643535, 0.42586750788643535, 0.42586750788643535, 0.9242902208201893, 0.43217665615141954, 0.4353312302839117, 0.42586750788643535, 0.4227129337539432, 0.7255520504731862, 0.9274447949526814, 0.7129337539432177, 0.43217665615141954, 0.42586750788643535, 0.4195583596214511, 0.4195583596214511, 0.4195583596214511, 0.41324921135646686, 0.9274447949526814, 0.41009463722397477, 0.9495268138801262, 0.4069400630914827, 0.41009463722397477, 0.4037854889589905, 0.8738170347003155, 0.9022082018927445, 0.886435331230284, 0.8548895899053628, 0.3659305993690852, 0.9463722397476341, 0.9495268138801262, 0.9337539432176656, 0.3249211356466877, 0.25236593059936907, 0.167192429022082, 0.14195583596214512, 0.12618296529968454, 0.11987381703470032, 0.11987381703470032, 0.11987381703470032, 0.11987381703470032, 0.11987381703470032, 0.1167192429022082, 0.9463722397476341, 0.9463722397476341, 0.9463722397476341, 0.10410094637223975, 0.10094637223974763, 0.10725552050473186, 0.10725552050473186, 0.8580441640378549, 0.8580441640378549, 0.8201892744479495, 0.11356466876971609, 0.1167192429022082, 0.09779179810725552, 0.8927444794952681, 0.9369085173501577, 0.8580441640378549, 0.0946372239747634, 0.10725552050473186, 0.13564668769716087, 0.14826498422712933, 0.12302839116719243, 0.06624605678233439, 0.056782334384858045, 0.031545741324921134, 0.028391167192429023, 0.025236593059936908, 0.015772870662460567, 0.015772870662460567, 0.03470031545741325, 0.5173501577287066, 0.028391167192429023, 0.028391167192429023, 0.08832807570977919, 0.07886435331230283, 0.9148264984227129, 0.9148264984227129, 0.025236593059936908, 0.3280757097791798, 0.8264984227129337, 0.8201892744479495, 0.022082018927444796, 0.01892744479495268, 0.015772870662460567, 0.015772870662460567, 0.015772870662460567, 0.015772870662460567, 0.031545741324921134, 0.01892744479495268, 0.025236593059936908, 0.012618296529968454, 0.012618296529968454, 0.9369085173501577, 0.00946372239747634, 0.00946372239747634, 0.015772870662460567, 0.015772870662460567, 0.012618296529968454, 0.012618296529968454, 0.01892744479495268, 0.7350157728706624, 0.0031545741324921135, 0.0031545741324921135, 0.0031545741324921135, 0.0031545741324921135, 0.0, 0.00946372239747634, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.9495268138801262, 0.0, 0.0, 0.0, 0.006309148264984227, 0.08201892744479496, 0.9495268138801262, 0.12302839116719243, 0.0694006309148265, 0.0, 0.0, 0.0, 0.006309148264984227, 0.012618296529968454, 0.00946372239747634, 0.015772870662460567, 0.01892744479495268, 0.01892744479495268, 0.01892744479495268, 0.01892744479495268, 0.01892744479495268, 0.01892744479495268, 0.01892744479495268, 0.06624605678233439, 0.09779179810725552, 0.10094637223974763, 0.10725552050473186, 0.2807570977917981, 0.9337539432176656, 0.20189274447949526, 0.10094637223974763, 0.10094637223974763, 0.07255520504731862, 0.06309148264984227, 0.031545741324921134, 0.07255520504731862, 0.05362776025236593, 0.07570977917981073, 0.056782334384858045, 0.056782334384858045, 0.05362776025236593, 0.05362776025236593, 0.06309148264984227, 0.05993690851735016, 0.9305993690851735, 0.056782334384858045, 0.0694006309148265, 0.06309148264984227, 0.06309148264984227, 0.06309148264984227, 0.06309148264984227, 0.06309148264984227, 0.06309148264984227, 0.06309148264984227, 0.06309148264984227, 0.6971608832807571], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/USP7_ICP0_bdg.gap.json b/pfam_gap_rates/USP7_ICP0_bdg.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..7c6a67c52ed02cd3a8fafc44501b78935585ce07
--- /dev/null
+++ b/pfam_gap_rates/USP7_ICP0_bdg.gap.json
@@ -0,0 +1 @@
+{"family": "USP7_ICP0_bdg", "n_seqs": 437, "length": 323, "gap_rates": [0.2448512585812357, 0.2151029748283753, 0.20137299771167047, 0.19908466819221968, 0.19679633867276888, 0.1945080091533181, 0.1945080091533181, 0.20594965675057209, 0.2128146453089245, 0.20137299771167047, 0.19221967963386727, 0.19221967963386727, 0.18993135011441648, 0.19221967963386727, 0.18306636155606407, 0.18306636155606407, 0.18306636155606407, 0.18306636155606407, 0.18306636155606407, 0.18077803203661327, 0.18077803203661327, 0.17848970251716248, 0.17848970251716248, 0.18077803203661327, 0.17848970251716248, 0.4073226544622426, 0.3890160183066362, 0.17391304347826086, 0.16704805491990846, 0.16704805491990846, 0.16018306636155608, 0.16704805491990846, 0.16704805491990846, 0.16933638443935928, 0.35697940503432496, 0.34782608695652173, 0.33638443935926776, 0.32265446224256294, 0.6933638443935927, 0.21052631578947367, 0.9107551487414187, 0.17848970251716248, 0.15560640732265446, 0.13729977116704806, 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\ No newline at end of file
diff --git a/pfam_gap_rates/Ubie_methyltran.gap.json b/pfam_gap_rates/Ubie_methyltran.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..317c2a5012b316a397f45a73917859da05b08bd6
--- /dev/null
+++ b/pfam_gap_rates/Ubie_methyltran.gap.json
@@ -0,0 +1 @@
+{"family": "Ubie_methyltran", "n_seqs": 1834, "length": 257, "gap_rates": [0.8833151581243184, 0.6717557251908397, 0.42802617230098144, 0.35986913849509267, 0.25190839694656486, 0.19956379498364232, 0.9247546346782988, 0.9460196292257361, 0.9067611777535441, 0.17502726281352235, 0.15648854961832062, 0.14721919302071973, 0.12486368593238822, 0.12159214830970556, 0.11995637949836423, 0.11886586695747, 0.11777535441657579, 0.11668484187568157, 0.11668484187568157, 0.11504907306434024, 0.11395856052344602, 0.11395856052344602, 0.1134133042529989, 0.10577971646673937, 0.1074154852780807, 0.10632497273718648, 0.10905125408942203, 0.10905125408942203, 0.1025081788440567, 0.1019629225736096, 0.10032715376226826, 0.09869138495092694, 0.0970556161395856, 0.0970556161395856, 0.09541984732824428, 0.09432933478735006, 0.09323882224645584, 0.09051254089422028, 0.8571428571428571, 0.08560523446019629, 0.08015267175572519, 0.07906215921483097, 0.0752453653217012, 0.07742639040348964, 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\ No newline at end of file
diff --git a/pfam_gap_rates/UreE_C.gap.json b/pfam_gap_rates/UreE_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..89f363b97286c8fbb79c2fb2f70f74943a3a1dbc
--- /dev/null
+++ b/pfam_gap_rates/UreE_C.gap.json
@@ -0,0 +1 @@
+{"family": "UreE_C", "n_seqs": 414, "length": 118, "gap_rates": [0.4420289855072464, 0.20048309178743962, 0.14009661835748793, 0.0966183574879227, 0.0821256038647343, 0.07246376811594203, 0.07004830917874397, 0.06521739130434782, 0.8719806763285024, 0.8913043478260869, 0.8888888888888888, 0.8695652173913043, 0.11835748792270531, 0.11594202898550725, 0.1111111111111111, 0.06280193236714976, 0.00966183574879227, 0.007246376811594203, 0.004830917874396135, 0.004830917874396135, 0.0024154589371980675, 0.0024154589371980675, 0.0024154589371980675, 0.0024154589371980675, 0.0024154589371980675, 0.0024154589371980675, 0.0024154589371980675, 0.0024154589371980675, 0.0024154589371980675, 0.0024154589371980675, 0.0024154589371980675, 0.0024154589371980675, 0.0024154589371980675, 0.0024154589371980675, 0.9444444444444444, 0.0024154589371980675, 0.0024154589371980675, 0.0024154589371980675, 0.0024154589371980675, 0.0024154589371980675, 0.0024154589371980675, 0.00966183574879227, 0.0024154589371980675, 0.9202898550724637, 0.9420289855072463, 0.9057971014492754, 0.0024154589371980675, 0.004830917874396135, 0.004830917874396135, 0.004830917874396135, 0.004830917874396135, 0.004830917874396135, 0.004830917874396135, 0.004830917874396135, 0.004830917874396135, 0.004830917874396135, 0.004830917874396135, 0.00966183574879227, 0.9396135265700483, 0.012077294685990338, 0.014492753623188406, 0.021739130434782608, 0.021739130434782608, 0.028985507246376812, 0.03864734299516908, 0.04830917874396135, 0.04830917874396135, 0.06280193236714976, 0.08454106280193237, 0.09903381642512077, 0.11352657004830918, 0.12318840579710146, 0.15458937198067632, 0.9468599033816425, 0.9347826086956522, 0.17632850241545894, 0.178743961352657, 0.18357487922705315, 0.18357487922705315, 0.9202898550724637, 0.4082125603864734, 0.4492753623188406, 0.3888888888888889, 0.3357487922705314, 0.2898550724637681, 0.23429951690821257, 0.2391304347826087, 0.24879227053140096, 0.7995169082125604, 0.8357487922705314, 0.8792270531400966, 0.8985507246376812, 0.9154589371980676, 0.9299516908212561, 0.9420289855072463, 0.9468599033816425, 0.9492753623188406, 0.9444444444444444, 0.9323671497584541, 0.927536231884058, 0.9106280193236715, 0.8888888888888888, 0.857487922705314, 0.8115942028985508, 0.7463768115942029, 0.5845410628019324, 0.5869565217391305, 0.5603864734299517, 0.49033816425120774, 0.5120772946859904, 0.5458937198067633, 0.9396135265700483, 0.9009661835748792, 0.5700483091787439, 0.5772946859903382, 0.5700483091787439, 0.6570048309178744, 0.6690821256038647], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/V-set.gap.json b/pfam_gap_rates/V-set.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..cfc0c21a896dd3ccff5ccbd764156dcb0744ba0b
--- /dev/null
+++ b/pfam_gap_rates/V-set.gap.json
@@ -0,0 +1 @@
+{"family": "V-set", "n_seqs": 5000, "length": 125, "gap_rates": [0.7914, 0.6478, 0.5062, 0.4088, 0.319, 0.2392, 0.19, 0.1258, 0.0888, 0.0666, 0.0534, 0.0456, 0.041, 0.0392, 0.0366, 0.0354, 0.0352, 0.0342, 0.9496, 0.049, 0.0436, 0.0362, 0.945, 0.0542, 0.1, 0.8108, 0.6094, 0.4394, 0.3002, 0.0546, 0.0262, 0.0238, 0.0208, 0.018, 0.0178, 0.0168, 0.0162, 0.0162, 0.0288, 0.025, 0.0546, 0.0856, 0.4666, 0.946, 0.9092, 0.3746, 0.135, 0.0952, 0.0524, 0.0374, 0.0248, 0.0256, 0.0258, 0.0272, 0.0694, 0.0578, 0.604, 0.8272, 0.8984, 0.7146, 0.5228, 0.162, 0.162, 0.0718, 0.0448, 0.0496, 0.0352, 0.0448, 0.7906, 0.0286, 0.0286, 0.01, 0.007, 0.007, 0.0064, 0.0092, 0.0174, 0.8448, 0.4362, 0.265, 0.049, 0.0432, 0.03, 0.008, 0.0036, 0.0034, 0.003, 0.003, 0.0032, 0.0034, 0.004, 0.0044, 0.0044, 0.0062, 0.0068, 0.007, 0.0074, 0.0084, 0.0094, 0.0116, 0.013, 0.0186, 0.0244, 0.2568, 0.8548, 0.9444, 0.9094, 0.7558, 0.3018, 0.3344, 0.3668, 0.4012, 0.4424, 0.4798, 0.5072, 0.5318, 0.5502, 0.5682, 0.5854, 0.5988, 0.6112, 0.6242, 0.6498, 0.6758, 0.9378], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/V4R.gap.json b/pfam_gap_rates/V4R.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..57797a52458abd5ac49442b04483b4a677939e1f
--- /dev/null
+++ b/pfam_gap_rates/V4R.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/VKG_Carbox.gap.json b/pfam_gap_rates/VKG_Carbox.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..bb540b604de4747efb46c5f63982cc31e3d20e35
--- /dev/null
+++ b/pfam_gap_rates/VKG_Carbox.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/VMA21.gap.json b/pfam_gap_rates/VMA21.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b372943472c2858bc7d39afe5483c32452df7802
--- /dev/null
+++ b/pfam_gap_rates/VMA21.gap.json
@@ -0,0 +1 @@
+{"family": "VMA21", "n_seqs": 246, "length": 66, "gap_rates": [0.9065040650406504, 0.18699186991869918, 0.1016260162601626, 0.06910569105691057, 0.056910569105691054, 0.052845528455284556, 0.04065040650406504, 0.04065040650406504, 0.032520325203252036, 0.032520325203252036, 0.024390243902439025, 0.024390243902439025, 0.016260162601626018, 0.016260162601626018, 0.016260162601626018, 0.016260162601626018, 0.016260162601626018, 0.016260162601626018, 0.016260162601626018, 0.016260162601626018, 0.012195121951219513, 0.012195121951219513, 0.012195121951219513, 0.012195121951219513, 0.016260162601626018, 0.016260162601626018, 0.024390243902439025, 0.024390243902439025, 0.06504065040650407, 0.04065040650406504, 0.16260162601626016, 0.943089430894309, 0.9349593495934959, 0.44308943089430897, 0.45934959349593496, 0.45528455284552843, 0.45528455284552843, 0.45121951219512196, 0.4268292682926829, 0.3983739837398374, 0.3617886178861789, 0.02032520325203252, 0.008130081300813009, 0.008130081300813009, 0.008130081300813009, 0.008130081300813009, 0.008130081300813009, 0.008130081300813009, 0.008130081300813009, 0.008130081300813009, 0.008130081300813009, 0.008130081300813009, 0.008130081300813009, 0.008130081300813009, 0.008130081300813009, 0.008130081300813009, 0.012195121951219513, 0.012195121951219513, 0.012195121951219513, 0.016260162601626018, 0.016260162601626018, 0.016260162601626018, 0.016260162601626018, 0.04065040650406504, 0.10569105691056911, 0.2601626016260163], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/VWA.gap.json b/pfam_gap_rates/VWA.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..52cdd2b61b43cd08d0ad32382a7d6e283069dab5
--- /dev/null
+++ b/pfam_gap_rates/VWA.gap.json
@@ -0,0 +1 @@
+{"family": "VWA", "n_seqs": 5000, "length": 242, "gap_rates": [0.3898, 0.2152, 0.1534, 0.1154, 0.1084, 0.1058, 0.1054, 0.1046, 0.102, 0.1058, 0.1044, 0.1016, 0.8814, 0.8936, 0.9418, 0.8988, 0.8854, 0.8372, 0.2248, 0.1154, 0.0964, 0.0938, 0.0924, 0.0848, 0.9246, 0.9438, 0.9372, 0.8602, 0.081, 0.0762, 0.0742, 0.071, 0.0698, 0.0692, 0.0676, 0.0676, 0.0672, 0.0664, 0.0656, 0.0654, 0.065, 0.0658, 0.9186, 0.4176, 0.8844, 0.9258, 0.947, 0.9032, 0.8702, 0.3814, 0.302, 0.0868, 0.0614, 0.0578, 0.0564, 0.0538, 0.0536, 0.0538, 0.053, 0.0526, 0.0512, 0.051, 0.0554, 0.054, 0.8756, 0.9414, 0.9212, 0.8542, 0.0538, 0.0564, 0.0568, 0.0568, 0.0586, 0.0556, 0.0548, 0.0562, 0.0552, 0.125, 0.1252, 0.8336, 0.935, 0.7638, 0.1904, 0.187, 0.0734, 0.0662, 0.0598, 0.0542, 0.0514, 0.05, 0.0494, 0.0516, 0.0526, 0.1434, 0.8972, 0.8436, 0.29, 0.1758, 0.0626, 0.055, 0.0498, 0.0502, 0.0474, 0.0482, 0.6104, 0.0576, 0.0478, 0.0486, 0.0458, 0.0438, 0.0438, 0.0486, 0.0446, 0.0526, 0.0456, 0.15, 0.0612, 0.0552, 0.0522, 0.0498, 0.0556, 0.0554, 0.0608, 0.943, 0.9172, 0.6052, 0.5434, 0.475, 0.8658, 0.9288, 0.8274, 0.2856, 0.2346, 0.055, 0.0398, 0.0358, 0.0332, 0.0336, 0.034, 0.0342, 0.0344, 0.0366, 0.0358, 0.0422, 0.0428, 0.0528, 0.0548, 0.7916, 0.2924, 0.5754, 0.8008, 0.9004, 0.9284, 0.9416, 0.9156, 0.8296, 0.7444, 0.4648, 0.064, 0.0702, 0.0704, 0.071, 0.0682, 0.0682, 0.0694, 0.0698, 0.0706, 0.0612, 0.9126, 0.9266, 0.9424, 0.9178, 0.909, 0.0676, 0.069, 0.9282, 0.071, 0.068, 0.0664, 0.0668, 0.0694, 0.0704, 0.0724, 0.0762, 0.0824, 0.7294, 0.8178, 0.8578, 0.8876, 0.9038, 0.9138, 0.9174, 0.9234, 0.9314, 0.9462, 0.9498, 0.9374, 0.929, 0.9192, 0.9158, 0.9104, 0.8996, 0.8766, 0.8422, 0.7856, 0.6962, 0.0936, 0.1142, 0.1188, 0.1336, 0.1376, 0.1434, 0.1518, 0.5576, 0.1634, 0.1648, 0.167, 0.169, 0.1938, 0.2044, 0.2194, 0.2276, 0.237, 0.9356, 0.7384, 0.4316, 0.2918, 0.288, 0.2912, 0.3056, 0.3192, 0.3378, 0.3592, 0.3808, 0.4004, 0.4562, 0.4826, 0.5314, 0.5852, 0.6318, 0.7064, 0.8202], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Vac_ImportDeg.gap.json b/pfam_gap_rates/Vac_ImportDeg.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..0dcbae29f446863359bd6d02b8b2f1c6392a72b5
--- /dev/null
+++ b/pfam_gap_rates/Vac_ImportDeg.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/VanW.gap.json b/pfam_gap_rates/VanW.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e4f0df3d1bf9e7aaca5d4dc2d3fc4a5b71d31853
--- /dev/null
+++ b/pfam_gap_rates/VanW.gap.json
@@ -0,0 +1 @@
+{"family": "VanW", "n_seqs": 1052, "length": 144, "gap_rates": [0.5846007604562737, 0.15019011406844107, 0.12832699619771862, 0.06749049429657794, 0.0655893536121673, 0.06463878326996197, 0.06463878326996197, 0.06368821292775666, 0.06368821292775666, 0.06368821292775666, 0.06368821292775666, 0.06368821292775666, 0.06273764258555133, 0.06273764258555133, 0.06368821292775666, 0.058935361216730035, 0.053231939163498096, 0.04752851711026616, 0.04847908745247148, 0.05038022813688213, 0.045627376425855515, 0.045627376425855515, 0.04657794676806084, 0.04467680608365019, 0.04467680608365019, 0.04467680608365019, 0.04467680608365019, 0.04467680608365019, 0.04467680608365019, 0.045627376425855515, 0.04467680608365019, 0.04467680608365019, 0.04467680608365019, 0.04752851711026616, 0.04657794676806084, 0.04752851711026616, 0.049429657794676805, 0.045627376425855515, 0.043726235741444866, 0.045627376425855515, 0.045627376425855515, 0.045627376425855515, 0.04467680608365019, 0.043726235741444866, 0.04277566539923954, 0.043726235741444866, 0.043726235741444866, 0.043726235741444866, 0.051330798479087454, 0.04847908745247148, 0.04847908745247148, 0.04752851711026616, 0.04277566539923954, 0.039923954372623575, 0.03897338403041825, 0.039923954372623575, 0.03802281368821293, 0.03326996197718631, 0.030418250950570342, 0.02376425855513308, 0.013307984790874524, 0.010456273764258554, 0.010456273764258554, 0.011406844106463879, 0.011406844106463879, 0.012357414448669201, 0.012357414448669201, 0.013307984790874524, 0.013307984790874524, 0.013307984790874524, 0.014258555133079848, 0.014258555133079848, 0.013307984790874524, 0.012357414448669201, 0.012357414448669201, 0.013307984790874524, 0.013307984790874524, 0.013307984790874524, 0.014258555133079848, 0.014258555133079848, 0.014258555133079848, 0.015209125475285171, 0.015209125475285171, 0.9153992395437263, 0.9163498098859315, 0.8982889733840305, 0.015209125475285171, 0.01806083650190114, 0.015209125475285171, 0.016159695817490494, 0.8944866920152091, 0.8878326996197718, 0.016159695817490494, 0.015209125475285171, 0.9372623574144486, 0.8849809885931559, 0.014258555133079848, 0.9020912547528517, 0.9068441064638784, 0.9486692015209125, 0.9039923954372624, 0.8992395437262357, 0.016159695817490494, 0.014258555133079848, 0.012357414448669201, 0.012357414448669201, 0.013307984790874524, 0.013307984790874524, 0.013307984790874524, 0.9277566539923955, 0.013307984790874524, 0.03136882129277566, 0.014258555133079848, 0.014258555133079848, 0.013307984790874524, 0.013307984790874524, 0.013307984790874524, 0.013307984790874524, 0.013307984790874524, 0.014258555133079848, 0.016159695817490494, 0.017110266159695818, 0.019011406844106463, 0.01806083650190114, 0.01806083650190114, 0.019011406844106463, 0.019011406844106463, 0.01806083650190114, 0.01806083650190114, 0.01806083650190114, 0.019011406844106463, 0.019011406844106463, 0.9477186311787072, 0.02091254752851711, 0.02376425855513308, 0.030418250950570342, 0.03897338403041825, 0.05038022813688213, 0.08269961977186312, 0.09315589353612168, 0.10646387832699619, 0.13878326996197718, 0.23288973384030418, 0.5655893536121673], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Vfa1.gap.json b/pfam_gap_rates/Vfa1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..741276f8497e17051c8ea4511d39cdd242c32d6d
--- /dev/null
+++ b/pfam_gap_rates/Vfa1.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/VirE.gap.json b/pfam_gap_rates/VirE.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..871518fad9a6a34c9652acd1070c7393772e1084
--- /dev/null
+++ b/pfam_gap_rates/VirE.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Vir_act_alpha_C.gap.json b/pfam_gap_rates/Vir_act_alpha_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..2dd5c5cd748f7ebf3876c07e368b4776d9a17c63
--- /dev/null
+++ b/pfam_gap_rates/Vir_act_alpha_C.gap.json
@@ -0,0 +1 @@
+{"family": "Vir_act_alpha_C", "n_seqs": 570, "length": 90, "gap_rates": [0.5210526315789473, 0.12105263157894737, 0.09824561403508772, 0.07543859649122807, 0.05087719298245614, 0.02982456140350877, 0.01929824561403509, 0.015789473684210527, 0.005263157894736842, 0.0035087719298245615, 0.005263157894736842, 0.0035087719298245615, 0.0035087719298245615, 0.0017543859649122807, 0.008771929824561403, 0.0035087719298245615, 0.0035087719298245615, 0.0035087719298245615, 0.0035087719298245615, 0.0035087719298245615, 0.0035087719298245615, 0.0035087719298245615, 0.0035087719298245615, 0.0035087719298245615, 0.0035087719298245615, 0.0035087719298245615, 0.0017543859649122807, 0.0017543859649122807, 0.0017543859649122807, 0.0017543859649122807, 0.0017543859649122807, 0.0017543859649122807, 0.0017543859649122807, 0.0017543859649122807, 0.0035087719298245615, 0.0035087719298245615, 0.0017543859649122807, 0.0035087719298245615, 0.0035087719298245615, 0.012280701754385965, 0.02456140350877193, 0.021052631578947368, 0.021052631578947368, 0.021052631578947368, 0.005263157894736842, 0.12105263157894737, 0.21754385964912282, 0.30701754385964913, 0.5473684210526316, 0.7701754385964912, 0.8736842105263158, 0.9456140350877194, 0.8368421052631579, 0.7368421052631579, 0.3543859649122807, 0.24561403508771928, 0.18771929824561404, 0.06140350877192982, 0.02456140350877193, 0.010526315789473684, 0.005263157894736842, 0.0035087719298245615, 0.0035087719298245615, 0.0017543859649122807, 0.0035087719298245615, 0.0017543859649122807, 0.0017543859649122807, 0.0035087719298245615, 0.0035087719298245615, 0.0017543859649122807, 0.0017543859649122807, 0.0017543859649122807, 0.0017543859649122807, 0.0017543859649122807, 0.005263157894736842, 0.005263157894736842, 0.007017543859649123, 0.012280701754385965, 0.015789473684210527, 0.017543859649122806, 0.021052631578947368, 0.02456140350877193, 0.028070175438596492, 0.04736842105263158, 0.0824561403508772, 0.10526315789473684, 0.14035087719298245, 0.21754385964912282, 0.3333333333333333, 0.7701754385964912], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Vitellogenin_N.gap.json b/pfam_gap_rates/Vitellogenin_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ea6af3f044499789bd9dd118515bcc5f7d647587
--- /dev/null
+++ b/pfam_gap_rates/Vitellogenin_N.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Vps55.gap.json b/pfam_gap_rates/Vps55.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..8cfd09dd45d7cc570d1e2df2c9cbffc8400447b7
--- /dev/null
+++ b/pfam_gap_rates/Vps55.gap.json
@@ -0,0 +1 @@
+{"family": "Vps55", "n_seqs": 313, "length": 134, "gap_rates": [0.38338658146964855, 0.22044728434504793, 0.18849840255591055, 0.17891373801916932, 0.1757188498402556, 0.1757188498402556, 0.16932907348242812, 0.134185303514377, 0.134185303514377, 0.134185303514377, 0.134185303514377, 0.1182108626198083, 0.10543130990415335, 0.10543130990415335, 0.10543130990415335, 0.10543130990415335, 0.10543130990415335, 0.0926517571884984, 0.0926517571884984, 0.11501597444089456, 0.0926517571884984, 0.9361022364217252, 0.9361022364217252, 0.08945686900958466, 0.08945686900958466, 0.9265175718849841, 0.7859424920127795, 0.07987220447284345, 0.8562300319488818, 0.07028753993610223, 0.07028753993610223, 0.07028753993610223, 0.04792332268370607, 0.04153354632587859, 0.038338658146964855, 0.02875399361022364, 0.02875399361022364, 0.025559105431309903, 0.022364217252396165, 0.019169329073482427, 0.01597444089456869, 0.01597444089456869, 0.01597444089456869, 0.01597444089456869, 0.01597444089456869, 0.01597444089456869, 0.01597444089456869, 0.012779552715654952, 0.012779552715654952, 0.012779552715654952, 0.012779552715654952, 0.012779552715654952, 0.012779552715654952, 0.025559105431309903, 0.038338658146964855, 0.06070287539936102, 0.23961661341853036, 0.5846645367412141, 0.8977635782747604, 0.9329073482428115, 0.9456869009584664, 0.9169329073482428, 0.8434504792332268, 0.46006389776357826, 0.30670926517571884, 0.8785942492012779, 0.07348242811501597, 0.038338658146964855, 0.019169329073482427, 0.009584664536741214, 0.009584664536741214, 0.009584664536741214, 0.009584664536741214, 0.006389776357827476, 0.006389776357827476, 0.006389776357827476, 0.006389776357827476, 0.006389776357827476, 0.006389776357827476, 0.006389776357827476, 0.006389776357827476, 0.006389776357827476, 0.006389776357827476, 0.006389776357827476, 0.006389776357827476, 0.006389776357827476, 0.009584664536741214, 0.009584664536741214, 0.006389776357827476, 0.009584664536741214, 0.009584664536741214, 0.009584664536741214, 0.009584664536741214, 0.009584664536741214, 0.012779552715654952, 0.012779552715654952, 0.012779552715654952, 0.9361022364217252, 0.939297124600639, 0.939297124600639, 0.9297124600638977, 0.01597444089456869, 0.019169329073482427, 0.02875399361022364, 0.02875399361022364, 0.03514376996805112, 0.03514376996805112, 0.038338658146964855, 0.04153354632587859, 0.04153354632587859, 0.04153354632587859, 0.04153354632587859, 0.04153354632587859, 0.04472843450479233, 0.04792332268370607, 0.04792332268370607, 0.04792332268370607, 0.04792332268370607, 0.04792332268370607, 0.04792332268370607, 0.051118210862619806, 0.051118210862619806, 0.054313099041533544, 0.054313099041533544, 0.054313099041533544, 0.05750798722044728, 0.06070287539936102, 0.07348242811501597, 0.09904153354632587, 0.16293929712460065, 0.20447284345047922, 0.25878594249201275, 0.45686900958466453, 0.8977635782747604], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Vwaint.gap.json b/pfam_gap_rates/Vwaint.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..92faea01e2e777d0db357765f531edda8fcb48f9
--- /dev/null
+++ b/pfam_gap_rates/Vwaint.gap.json
@@ -0,0 +1 @@
+{"family": "Vwaint", "n_seqs": 186, "length": 107, "gap_rates": [0.46236559139784944, 0.24193548387096775, 0.1989247311827957, 0.16666666666666666, 0.11290322580645161, 0.06989247311827956, 0.06451612903225806, 0.06451612903225806, 0.06451612903225806, 0.06451612903225806, 0.06451612903225806, 0.7204301075268817, 0.8548387096774194, 0.8548387096774194, 0.8602150537634409, 0.8548387096774194, 0.8548387096774194, 0.043010752688172046, 0.043010752688172046, 0.043010752688172046, 0.043010752688172046, 0.03225806451612903, 0.03225806451612903, 0.03225806451612903, 0.08064516129032258, 0.026881720430107527, 0.026881720430107527, 0.016129032258064516, 0.016129032258064516, 0.016129032258064516, 0.016129032258064516, 0.005376344086021506, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.005376344086021506, 0.005376344086021506, 0.005376344086021506, 0.016129032258064516, 0.03225806451612903, 0.026881720430107527, 0.6935483870967742, 0.7795698924731183, 0.7795698924731183, 0.7580645161290323, 0.6451612903225806, 0.03225806451612903, 0.06989247311827956, 0.026881720430107527, 0.7204301075268817, 0.7311827956989247, 0.8279569892473119, 0.8387096774193549, 0.8440860215053764, 0.8494623655913979, 0.8655913978494624, 0.8709677419354839, 0.8870967741935484, 0.8978494623655914, 0.9086021505376344, 0.9354838709677419, 0.9354838709677419, 0.9193548387096774, 0.9086021505376344, 0.8978494623655914, 0.8817204301075269, 0.8709677419354839, 0.8548387096774194, 0.8494623655913979, 0.8440860215053764, 0.8387096774193549, 0.7311827956989247, 0.7204301075268817, 0.6451612903225806, 0.016129032258064516, 0.021505376344086023, 0.8010752688172043, 0.8010752688172043, 0.03225806451612903, 0.026881720430107527, 0.026881720430107527, 0.03225806451612903, 0.03225806451612903, 0.03225806451612903, 0.03225806451612903, 0.04838709677419355, 0.05913978494623656, 0.07526881720430108, 0.08064516129032258, 0.13440860215053763, 0.8817204301075269], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/WAC_Acf1_DNA_bd.gap.json b/pfam_gap_rates/WAC_Acf1_DNA_bd.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..520277f78603dd3c8a42146fd4975da8ee73bc54
--- /dev/null
+++ b/pfam_gap_rates/WAC_Acf1_DNA_bd.gap.json
@@ -0,0 +1 @@
+{"family": "WAC_Acf1_DNA_bd", "n_seqs": 297, "length": 101, "gap_rates": [0.47474747474747475, 0.20875420875420875, 0.16161616161616163, 0.16161616161616163, 0.16161616161616163, 0.15824915824915825, 0.15824915824915825, 0.15824915824915825, 0.15824915824915825, 0.15824915824915825, 0.15824915824915825, 0.15488215488215487, 0.15151515151515152, 0.13804713804713806, 0.11784511784511785, 0.10437710437710437, 0.08080808080808081, 0.08417508417508418, 0.08417508417508418, 0.08754208754208755, 0.08754208754208755, 0.06734006734006734, 0.05723905723905724, 0.05723905723905724, 0.050505050505050504, 0.050505050505050504, 0.04040404040404041, 0.037037037037037035, 0.04040404040404041, 0.03367003367003367, 0.03367003367003367, 0.03367003367003367, 0.03367003367003367, 0.03367003367003367, 0.03367003367003367, 0.030303030303030304, 0.030303030303030304, 0.030303030303030304, 0.030303030303030304, 0.020202020202020204, 0.020202020202020204, 0.020202020202020204, 0.020202020202020204, 0.020202020202020204, 0.020202020202020204, 0.020202020202020204, 0.020202020202020204, 0.020202020202020204, 0.020202020202020204, 0.020202020202020204, 0.026936026936026935, 0.026936026936026935, 0.020202020202020204, 0.013468013468013467, 0.010101010101010102, 0.013468013468013467, 0.010101010101010102, 0.42424242424242425, 0.016835016835016835, 0.003367003367003367, 0.003367003367003367, 0.006734006734006734, 0.006734006734006734, 0.010101010101010102, 0.010101010101010102, 0.010101010101010102, 0.010101010101010102, 0.010101010101010102, 0.010101010101010102, 0.010101010101010102, 0.010101010101010102, 0.010101010101010102, 0.010101010101010102, 0.013468013468013467, 0.016835016835016835, 0.020202020202020204, 0.020202020202020204, 0.030303030303030304, 0.3333333333333333, 0.037037037037037035, 0.04040404040404041, 0.04040404040404041, 0.04040404040404041, 0.04040404040404041, 0.04040404040404041, 0.04377104377104377, 0.04713804713804714, 0.04713804713804714, 0.04713804713804714, 0.04713804713804714, 0.04713804713804714, 0.050505050505050504, 0.05723905723905724, 0.06734006734006734, 0.0707070707070707, 0.0707070707070707, 0.07744107744107744, 0.08417508417508418, 0.12794612794612795, 0.15488215488215487, 0.30976430976430974], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/WAP.gap.json b/pfam_gap_rates/WAP.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..572530a97b57da98c88368cb7ae6c0478d62916c
--- /dev/null
+++ b/pfam_gap_rates/WAP.gap.json
@@ -0,0 +1 @@
+{"family": "WAP", "n_seqs": 1141, "length": 50, "gap_rates": [0.27607361963190186, 0.1691498685363716, 0.10517090271691498, 0.04645048203330412, 0.03593339176161262, 0.03593339176161262, 0.03593339176161262, 0.09027169149868536, 0.08326029798422437, 0.08939526730937773, 0.09553023663453111, 0.12883435582822086, 0.13584574934268187, 0.3409290096406661, 0.7055214723926381, 0.8957055214723927, 0.9386503067484663, 0.8518843120070114, 0.44522348816827345, 0.16038562664329536, 0.05258545135845749, 0.008764241893076249, 0.013146362839614373, 0.006134969325153374, 0.0008764241893076249, 0.0008764241893076249, 0.0008764241893076249, 0.0, 0.0, 0.0, 0.0, 0.0008764241893076249, 0.0, 0.0017528483786152498, 0.0, 0.0, 0.0, 0.0017528483786152498, 0.0017528483786152498, 0.015775635407537247, 0.008764241893076249, 0.007887817703768623, 0.011393514460999123, 0.8913234005258545, 0.014899211218229623, 0.017528483786152498, 0.015775635407537247, 0.028045574057843997, 0.2401402278702892, 0.287467134092901], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/WCOR413.gap.json b/pfam_gap_rates/WCOR413.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..2e9d6db66e06e77c99e5d12ec0e66e66c780b013
--- /dev/null
+++ b/pfam_gap_rates/WCOR413.gap.json
@@ -0,0 +1 @@
+{"family": "WCOR413", "n_seqs": 115, "length": 184, "gap_rates": [0.7739130434782608, 0.7565217391304347, 0.7478260869565218, 0.6956521739130435, 0.6347826086956522, 0.6347826086956522, 0.5826086956521739, 0.5652173913043478, 0.5565217391304348, 0.5565217391304348, 0.5304347826086957, 0.5304347826086957, 0.5304347826086957, 0.5304347826086957, 0.5304347826086957, 0.5304347826086957, 0.5304347826086957, 0.5304347826086957, 0.5304347826086957, 0.5217391304347826, 0.5217391304347826, 0.4956521739130435, 0.48695652173913045, 0.4608695652173913, 0.4608695652173913, 0.45217391304347826, 0.4260869565217391, 0.391304347826087, 0.9478260869565217, 0.9130434782608695, 0.391304347826087, 0.3826086956521739, 0.3652173913043478, 0.3652173913043478, 0.6782608695652174, 0.3652173913043478, 0.3565217391304348, 0.3391304347826087, 0.4, 0.3217391304347826, 0.30434782608695654, 0.2956521739130435, 0.2956521739130435, 0.28695652173913044, 0.25217391304347825, 0.25217391304347825, 0.24347826086956523, 0.24347826086956523, 0.24347826086956523, 0.22608695652173913, 0.21739130434782608, 0.21739130434782608, 0.20869565217391303, 0.20869565217391303, 0.12173913043478261, 0.12173913043478261, 0.10434782608695652, 0.10434782608695652, 0.10434782608695652, 0.10434782608695652, 0.10434782608695652, 0.10434782608695652, 0.34782608695652173, 0.34782608695652173, 0.34782608695652173, 0.3391304347826087, 0.10434782608695652, 0.08695652173913043, 0.08695652173913043, 0.08695652173913043, 0.08695652173913043, 0.08695652173913043, 0.08695652173913043, 0.08695652173913043, 0.08695652173913043, 0.08695652173913043, 0.08695652173913043, 0.08695652173913043, 0.08695652173913043, 0.08695652173913043, 0.08695652173913043, 0.08695652173913043, 0.08695652173913043, 0.08695652173913043, 0.08695652173913043, 0.08695652173913043, 0.08695652173913043, 0.0782608695652174, 0.0782608695652174, 0.06086956521739131, 0.06956521739130435, 0.0782608695652174, 0.0782608695652174, 0.0782608695652174, 0.0782608695652174, 0.0782608695652174, 0.0782608695652174, 0.08695652173913043, 0.08695652173913043, 0.08695652173913043, 0.08695652173913043, 0.08695652173913043, 0.08695652173913043, 0.08695652173913043, 0.08695652173913043, 0.08695652173913043, 0.08695652173913043, 0.08695652173913043, 0.3565217391304348, 0.3565217391304348, 0.09565217391304348, 0.08695652173913043, 0.08695652173913043, 0.11304347826086956, 0.1391304347826087, 0.1565217391304348, 0.17391304347826086, 0.16521739130434782, 0.16521739130434782, 0.1391304347826087, 0.12173913043478261, 0.12173913043478261, 0.11304347826086956, 0.11304347826086956, 0.11304347826086956, 0.11304347826086956, 0.10434782608695652, 0.10434782608695652, 0.10434782608695652, 0.09565217391304348, 0.09565217391304348, 0.09565217391304348, 0.09565217391304348, 0.09565217391304348, 0.09565217391304348, 0.391304347826087, 0.09565217391304348, 0.09565217391304348, 0.11304347826086956, 0.13043478260869565, 0.13043478260869565, 0.13043478260869565, 0.13043478260869565, 0.1391304347826087, 0.1391304347826087, 0.1391304347826087, 0.1391304347826087, 0.1391304347826087, 0.1391304347826087, 0.1391304347826087, 0.1391304347826087, 0.14782608695652175, 0.14782608695652175, 0.14782608695652175, 0.14782608695652175, 0.14782608695652175, 0.14782608695652175, 0.14782608695652175, 0.14782608695652175, 0.14782608695652175, 0.14782608695652175, 0.14782608695652175, 0.17391304347826086, 0.14782608695652175, 0.14782608695652175, 0.14782608695652175, 0.17391304347826086, 0.2, 0.2, 0.2, 0.2, 0.2, 0.2, 0.2, 0.2, 0.20869565217391303, 0.43478260869565216, 0.21739130434782608, 0.21739130434782608, 0.21739130434782608, 0.21739130434782608, 0.22608695652173913, 0.23478260869565218, 0.26956521739130435], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/WG_beta_rep.gap.json b/pfam_gap_rates/WG_beta_rep.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..9f7c5fe41c48304955dcebef6705fd16ec0e6391
--- /dev/null
+++ b/pfam_gap_rates/WG_beta_rep.gap.json
@@ -0,0 +1 @@
+{"family": "WG_beta_rep", "n_seqs": 3301, "length": 36, "gap_rates": [0.29566797940018175, 0.10814904574371402, 0.0669494092699182, 0.05604362314450167, 0.049378976067858224, 0.04574371402605271, 0.03938200545289306, 0.03604968191457134, 0.031202665858830657, 0.023629203271735837, 0.019993941229930322, 0.015449863677673432, 0.014238109663738261, 0.023023326264768253, 0.007573462587094819, 0.006361708573159649, 0.008785216601029992, 0.015752802181157224, 0.022114510754316873, 0.04847016055740685, 0.055134807634050285, 0.06452590124204786, 0.9291123901847925, 0.07482581036049682, 0.08149045743714026, 0.0884580430172675, 0.10209027567403817, 0.1132990003029385, 0.12178127840048471, 0.1381399575886095, 0.21084519842471977, 0.2635564980308997, 0.31263253559527415, 0.3847318994244168, 0.4668282338685247, 0.601029990911845], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/WW.gap.json b/pfam_gap_rates/WW.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..5724458df1d654b042d14b215c9c65956eeeefeb
--- /dev/null
+++ b/pfam_gap_rates/WW.gap.json
@@ -0,0 +1 @@
+{"family": "WW", "n_seqs": 5000, "length": 31, "gap_rates": [0.4002, 0.3364, 0.2178, 0.092, 0.0174, 0.0136, 0.0072, 0.0052, 0.0044, 0.0026, 0.0016, 0.007, 0.6816, 0.0036, 0.0002, 0.0002, 0.0, 0.0, 0.0, 0.0, 0.0006, 0.0004, 0.0028, 0.0012, 0.0014, 0.0022, 0.0032, 0.0044, 0.01, 0.0198, 0.0242], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/WWE.gap.json b/pfam_gap_rates/WWE.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..9af6df0e0886117eecc0a5354ed6d059ae31eec4
--- /dev/null
+++ b/pfam_gap_rates/WWE.gap.json
@@ -0,0 +1 @@
+{"family": "WWE", "n_seqs": 779, "length": 97, "gap_rates": [0.6546854942233633, 0.2734274711168164, 0.14249037227214378, 0.059050064184852376, 0.057766367137355584, 0.051347881899871634, 0.05006418485237484, 0.04749679075738126, 0.04878048780487805, 0.8613607188703466, 0.9409499358151476, 0.9486521181001284, 0.883183568677792, 0.7573812580231065, 0.23876765083440307, 0.057766367137355584, 0.021822849807445442, 0.02053915275994865, 0.019255455712451863, 0.019255455712451863, 0.01797175866495507, 0.01668806161745828, 0.01540436456996149, 0.014120667522464698, 0.9024390243902439, 0.9062901155327343, 0.9165596919127086, 0.9358151476251605, 0.9396662387676509, 0.9178433889602053, 0.9114249037227214, 0.9024390243902439, 0.8985879332477535, 0.010269576379974325, 0.008985879332477536, 0.008985879332477536, 0.008985879332477536, 0.008985879332477536, 0.008985879332477536, 0.006418485237483954, 0.006418485237483954, 0.01797175866495507, 0.01797175866495507, 0.025673940949935817, 0.8818998716302953, 0.926829268292683, 0.8228498074454429, 0.08600770218228498, 0.09114249037227215, 0.07060333761232349, 0.06418485237483953, 0.037227214377406934, 0.8921694480102695, 0.9293966623876765, 0.944801026957638, 0.9101412066752247, 0.8664955070603337, 0.14762516046213095, 0.15661103979460847, 0.9460847240051348, 0.11553273427471117, 0.0962772785622593, 0.4634146341463415, 0.45314505776636715, 0.06546854942233633, 0.03080872913992298, 0.9114249037227214, 0.9293966623876765, 0.8857509627727856, 0.019255455712451863, 0.01797175866495507, 0.019255455712451863, 0.05263157894736842, 0.02053915275994865, 0.019255455712451863, 0.02053915275994865, 0.02053915275994865, 0.025673940949935817, 0.025673940949935817, 0.944801026957638, 0.9396662387676509, 0.029525032092426188, 0.038510911424903725, 0.043645699614890884, 0.051347881899871634, 0.057766367137355584, 0.10397946084724005, 0.7458279845956355, 0.12195121951219512, 0.12195121951219512, 0.09884467265725289, 0.10141206675224647, 0.10783055198973042, 0.11424903722721438, 0.1258023106546855, 0.19768934531450577, 0.2490372272143774], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Wzy_C_2.gap.json b/pfam_gap_rates/Wzy_C_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..9a9e20adff4999b7f1061cf2a825785f1143b231
--- /dev/null
+++ b/pfam_gap_rates/Wzy_C_2.gap.json
@@ -0,0 +1 @@
+{"family": "Wzy_C_2", "n_seqs": 105, "length": 200, "gap_rates": [0.8285714285714286, 0.34285714285714286, 0.2, 0.11428571428571428, 0.09523809523809523, 0.06666666666666667, 0.047619047619047616, 0.0380952380952381, 0.0380952380952381, 0.0380952380952381, 0.0380952380952381, 0.0380952380952381, 0.0380952380952381, 0.0380952380952381, 0.0380952380952381, 0.0380952380952381, 0.0380952380952381, 0.0380952380952381, 0.0380952380952381, 0.0380952380952381, 0.0380952380952381, 0.0380952380952381, 0.0380952380952381, 0.0380952380952381, 0.0380952380952381, 0.0380952380952381, 0.05714285714285714, 0.047619047619047616, 0.02857142857142857, 0.02857142857142857, 0.02857142857142857, 0.02857142857142857, 0.02857142857142857, 0.6952380952380952, 0.0380952380952381, 0.02857142857142857, 0.02857142857142857, 0.0380952380952381, 0.02857142857142857, 0.6190476190476191, 0.8380952380952381, 0.9047619047619048, 0.9428571428571428, 0.9428571428571428, 0.8666666666666667, 0.6761904761904762, 0.5523809523809524, 0.47619047619047616, 0.4095238095238095, 0.37142857142857144, 0.2761904761904762, 0.05714285714285714, 0.0380952380952381, 0.047619047619047616, 0.0380952380952381, 0.05714285714285714, 0.0761904761904762, 0.9428571428571428, 0.047619047619047616, 0.0380952380952381, 0.047619047619047616, 0.05714285714285714, 0.0380952380952381, 0.0380952380952381, 0.02857142857142857, 0.047619047619047616, 0.0380952380952381, 0.0380952380952381, 0.0380952380952381, 0.0380952380952381, 0.047619047619047616, 0.02857142857142857, 0.02857142857142857, 0.02857142857142857, 0.02857142857142857, 0.047619047619047616, 0.0380952380952381, 0.02857142857142857, 0.02857142857142857, 0.01904761904761905, 0.01904761904761905, 0.02857142857142857, 0.01904761904761905, 0.01904761904761905, 0.01904761904761905, 0.01904761904761905, 0.9142857142857143, 0.8761904761904762, 0.01904761904761905, 0.01904761904761905, 0.01904761904761905, 0.01904761904761905, 0.02857142857142857, 0.02857142857142857, 0.02857142857142857, 0.02857142857142857, 0.02857142857142857, 0.02857142857142857, 0.0380952380952381, 0.0380952380952381, 0.08571428571428572, 0.0761904761904762, 0.05714285714285714, 0.06666666666666667, 0.06666666666666667, 0.06666666666666667, 0.06666666666666667, 0.12380952380952381, 0.38095238095238093, 0.37142857142857144, 0.3142857142857143, 0.22857142857142856, 0.22857142857142856, 0.22857142857142856, 0.23809523809523808, 0.41904761904761906, 0.9238095238095239, 0.8952380952380953, 0.05714285714285714, 0.047619047619047616, 0.047619047619047616, 0.047619047619047616, 0.047619047619047616, 0.0380952380952381, 0.0380952380952381, 0.0380952380952381, 0.0380952380952381, 0.0380952380952381, 0.047619047619047616, 0.047619047619047616, 0.0380952380952381, 0.08571428571428572, 0.09523809523809523, 0.09523809523809523, 0.09523809523809523, 0.06666666666666667, 0.047619047619047616, 0.047619047619047616, 0.047619047619047616, 0.05714285714285714, 0.0380952380952381, 0.0380952380952381, 0.05714285714285714, 0.06666666666666667, 0.05714285714285714, 0.05714285714285714, 0.047619047619047616, 0.0380952380952381, 0.047619047619047616, 0.047619047619047616, 0.047619047619047616, 0.0380952380952381, 0.047619047619047616, 0.047619047619047616, 0.05714285714285714, 0.047619047619047616, 0.0380952380952381, 0.0380952380952381, 0.05714285714285714, 0.0380952380952381, 0.047619047619047616, 0.047619047619047616, 0.0380952380952381, 0.0380952380952381, 0.0380952380952381, 0.0380952380952381, 0.047619047619047616, 0.0380952380952381, 0.0380952380952381, 0.0380952380952381, 0.05714285714285714, 0.047619047619047616, 0.047619047619047616, 0.047619047619047616, 0.047619047619047616, 0.047619047619047616, 0.047619047619047616, 0.047619047619047616, 0.047619047619047616, 0.047619047619047616, 0.05714285714285714, 0.0761904761904762, 0.0761904761904762, 0.0761904761904762, 0.26666666666666666, 0.12380952380952381, 0.1523809523809524, 0.20952380952380953, 0.23809523809523808, 0.2761904761904762, 0.3142857142857143, 0.4, 0.4380952380952381, 0.49523809523809526, 0.7333333333333333, 0.7619047619047619, 0.8380952380952381, 0.780952380952381, 0.8666666666666667, 0.9142857142857143], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Wzz.gap.json b/pfam_gap_rates/Wzz.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..62bbb9baa325605745cf6389972cc266a6672523
--- /dev/null
+++ b/pfam_gap_rates/Wzz.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/XFP.gap.json b/pfam_gap_rates/XFP.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..1d3733bacaf193325fdb6da1a6ca5fdb1e158c85
--- /dev/null
+++ b/pfam_gap_rates/XFP.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/XFP_N.gap.json b/pfam_gap_rates/XFP_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..7b47b14eceb61b7122d5cf1a426d98a033fec7c3
--- /dev/null
+++ b/pfam_gap_rates/XFP_N.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Xan_ur_permease.gap.json b/pfam_gap_rates/Xan_ur_permease.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..0ad561afbc6d685bc68ffc3956f656922c59f97f
--- /dev/null
+++ b/pfam_gap_rates/Xan_ur_permease.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/XhlA.gap.json b/pfam_gap_rates/XhlA.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ac256c7c9ca4c1d0e409e3127839addc9bf0470d
--- /dev/null
+++ b/pfam_gap_rates/XhlA.gap.json
@@ -0,0 +1 @@
+{"family": "XhlA", "n_seqs": 102, "length": 70, "gap_rates": [0.5980392156862745, 0.24509803921568626, 0.19607843137254902, 0.13725490196078433, 0.10784313725490197, 0.10784313725490197, 0.10784313725490197, 0.10784313725490197, 0.058823529411764705, 0.058823529411764705, 0.058823529411764705, 0.058823529411764705, 0.049019607843137254, 0.0392156862745098, 0.029411764705882353, 0.029411764705882353, 0.0196078431372549, 0.0196078431372549, 0.8725490196078431, 0.8725490196078431, 0.7549019607843137, 0.0784313725490196, 0.29411764705882354, 0.29411764705882354, 0.28431372549019607, 0.17647058823529413, 0.09803921568627451, 0.0196078431372549, 0.0196078431372549, 0.0196078431372549, 0.0196078431372549, 0.0196078431372549, 0.0196078431372549, 0.0196078431372549, 0.0196078431372549, 0.0196078431372549, 0.0196078431372549, 0.00980392156862745, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0196078431372549, 0.0196078431372549, 0.0196078431372549, 0.029411764705882353, 0.029411764705882353, 0.029411764705882353, 0.0392156862745098, 0.049019607843137254, 0.049019607843137254, 0.06862745098039216, 0.06862745098039216, 0.049019607843137254, 0.049019607843137254, 0.049019607843137254, 0.049019607843137254, 0.049019607843137254, 0.058823529411764705, 0.16666666666666666, 0.4411764705882353], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/YIEGIA.gap.json b/pfam_gap_rates/YIEGIA.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..261146a748c594c45502e2d080a7ad023bb8e55f
--- /dev/null
+++ b/pfam_gap_rates/YIEGIA.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Y_Y_Y.gap.json b/pfam_gap_rates/Y_Y_Y.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..627a096a3ce4f83dd401f338aa0ab035cd68bd00
--- /dev/null
+++ b/pfam_gap_rates/Y_Y_Y.gap.json
@@ -0,0 +1 @@
+{"family": "Y_Y_Y", "n_seqs": 1344, "length": 69, "gap_rates": [0.6904761904761905, 0.41443452380952384, 0.3072916666666667, 0.20758928571428573, 0.14136904761904762, 0.10416666666666667, 0.07514880952380952, 0.04017857142857143, 0.023809523809523808, 0.015625, 0.011904761904761904, 0.008928571428571428, 0.08854166666666667, 0.006696428571428571, 0.025297619047619048, 0.017857142857142856, 0.008928571428571428, 0.005208333333333333, 0.006696428571428571, 0.002976190476190476, 0.001488095238095238, 0.001488095238095238, 0.001488095238095238, 0.001488095238095238, 0.001488095238095238, 0.0, 0.0, 0.08705357142857142, 0.6956845238095238, 0.8772321428571429, 0.8616071428571429, 0.000744047619047619, 0.000744047619047619, 0.000744047619047619, 0.0, 0.0, 0.001488095238095238, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.000744047619047619, 0.000744047619047619, 0.002232142857142857, 0.00744047619047619, 0.015625, 0.021577380952380952, 0.04836309523809524, 0.046130952380952384, 0.041666666666666664, 0.05431547619047619, 0.07068452380952381, 0.08258928571428571, 0.09300595238095238, 0.11458333333333333, 0.29017857142857145, 0.8549107142857143, 0.14136904761904762, 0.14211309523809523, 0.15029761904761904, 0.16666666666666666, 0.18601190476190477, 0.23660714285714285, 0.2767857142857143, 0.8563988095238095], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/YcbB.gap.json b/pfam_gap_rates/YcbB.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..cb92e9294d2356b58777b127ad312318f6036015
--- /dev/null
+++ b/pfam_gap_rates/YcbB.gap.json
@@ -0,0 +1 @@
+{"family": "YcbB", "n_seqs": 115, "length": 140, "gap_rates": [0.391304347826087, 0.13043478260869565, 0.008695652173913044, 0.008695652173913044, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.008695652173913044, 0.43478260869565216, 0.6, 0.6, 0.5565217391304348, 0.40869565217391307, 0.2608695652173913, 0.25217391304347825, 0.20869565217391303, 0.13043478260869565, 0.0782608695652174, 0.043478260869565216, 0.05217391304347826, 0.06956521739130435, 0.05217391304347826, 0.043478260869565216, 0.02608695652173913, 0.05217391304347826, 0.043478260869565216, 0.043478260869565216, 0.043478260869565216, 0.017391304347826087, 0.08695652173913043, 0.1391304347826087, 0.19130434782608696, 0.6869565217391305, 0.7217391304347827, 0.6869565217391305, 0.391304347826087, 0.4782608695652174, 0.4608695652173913, 0.3391304347826087, 0.3130434782608696, 0.28695652173913044, 0.25217391304347825, 0.12173913043478261, 0.06086956521739131, 0.02608695652173913, 0.008695652173913044, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.008695652173913044, 0.008695652173913044, 0.008695652173913044, 0.008695652173913044, 0.008695652173913044, 0.008695652173913044, 0.008695652173913044, 0.008695652173913044, 0.008695652173913044, 0.008695652173913044, 0.008695652173913044, 0.008695652173913044, 0.008695652173913044, 0.008695652173913044, 0.008695652173913044, 0.008695652173913044, 0.017391304347826087, 0.008695652173913044, 0.008695652173913044, 0.008695652173913044, 0.008695652173913044, 0.008695652173913044, 0.008695652173913044, 0.008695652173913044, 0.008695652173913044, 0.008695652173913044, 0.017391304347826087, 0.008695652173913044, 0.008695652173913044, 0.008695652173913044, 0.008695652173913044, 0.008695652173913044, 0.008695652173913044, 0.008695652173913044, 0.008695652173913044, 0.008695652173913044, 0.008695652173913044, 0.008695652173913044, 0.008695652173913044, 0.008695652173913044, 0.008695652173913044, 0.008695652173913044, 0.008695652173913044, 0.008695652173913044, 0.5304347826086957, 0.7391304347826086, 0.6782608695652174, 0.02608695652173913, 0.017391304347826087, 0.017391304347826087, 0.017391304347826087, 0.017391304347826087, 0.017391304347826087, 0.017391304347826087, 0.017391304347826087, 0.02608695652173913, 0.02608695652173913, 0.034782608695652174, 0.08695652173913043], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Ycf4.gap.json b/pfam_gap_rates/Ycf4.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..0132c0bdf17cb2384ed21ea21984018198b032fd
--- /dev/null
+++ b/pfam_gap_rates/Ycf4.gap.json
@@ -0,0 +1 @@
+{"family": "Ycf4", "n_seqs": 134, "length": 180, "gap_rates": [0.9253731343283582, 0.44776119402985076, 0.30597014925373134, 0.2835820895522388, 0.26865671641791045, 0.2462686567164179, 0.23880597014925373, 0.23134328358208955, 0.22388059701492538, 0.22388059701492538, 0.22388059701492538, 0.22388059701492538, 0.22388059701492538, 0.22388059701492538, 0.22388059701492538, 0.21641791044776118, 0.21641791044776118, 0.21641791044776118, 0.21641791044776118, 0.21641791044776118, 0.21641791044776118, 0.208955223880597, 0.208955223880597, 0.208955223880597, 0.208955223880597, 0.20149253731343283, 0.19402985074626866, 0.19402985074626866, 0.19402985074626866, 0.19402985074626866, 0.19402985074626866, 0.19402985074626866, 0.19402985074626866, 0.19402985074626866, 0.19402985074626866, 0.19402985074626866, 0.19402985074626866, 0.19402985074626866, 0.19402985074626866, 0.208955223880597, 0.22388059701492538, 0.21641791044776118, 0.21641791044776118, 0.21641791044776118, 0.21641791044776118, 0.21641791044776118, 0.21641791044776118, 0.21641791044776118, 0.21641791044776118, 0.208955223880597, 0.208955223880597, 0.9477611940298507, 0.208955223880597, 0.21641791044776118, 0.208955223880597, 0.208955223880597, 0.208955223880597, 0.20149253731343283, 0.20149253731343283, 0.20149253731343283, 0.20149253731343283, 0.17164179104477612, 0.17164179104477612, 0.17164179104477612, 0.16417910447761194, 0.16417910447761194, 0.16417910447761194, 0.17164179104477612, 0.17164179104477612, 0.17164179104477612, 0.17164179104477612, 0.17164179104477612, 0.17164179104477612, 0.17164179104477612, 0.17164179104477612, 0.17164179104477612, 0.17164179104477612, 0.17164179104477612, 0.17164179104477612, 0.17164179104477612, 0.17164179104477612, 0.17164179104477612, 0.17164179104477612, 0.15671641791044777, 0.12686567164179105, 0.12686567164179105, 0.12686567164179105, 0.11940298507462686, 0.11940298507462686, 0.11940298507462686, 0.11940298507462686, 0.11940298507462686, 0.11940298507462686, 0.11940298507462686, 0.11940298507462686, 0.1044776119402985, 0.1044776119402985, 0.09701492537313433, 0.08955223880597014, 0.08955223880597014, 0.08955223880597014, 0.08955223880597014, 0.08955223880597014, 0.08955223880597014, 0.08955223880597014, 0.14925373134328357, 0.14925373134328357, 0.1417910447761194, 0.09701492537313433, 0.1044776119402985, 0.1044776119402985, 0.1044776119402985, 0.1044776119402985, 0.1044776119402985, 0.11194029850746269, 0.11194029850746269, 0.11940298507462686, 0.11194029850746269, 0.11194029850746269, 0.11194029850746269, 0.11194029850746269, 0.11940298507462686, 0.11194029850746269, 0.11194029850746269, 0.11194029850746269, 0.1044776119402985, 0.09701492537313433, 0.09701492537313433, 0.09701492537313433, 0.1044776119402985, 0.1044776119402985, 0.11194029850746269, 0.11194029850746269, 0.1044776119402985, 0.1044776119402985, 0.1044776119402985, 0.1044776119402985, 0.1044776119402985, 0.11194029850746269, 0.1044776119402985, 0.1044776119402985, 0.1044776119402985, 0.1044776119402985, 0.11194029850746269, 0.11940298507462686, 0.11940298507462686, 0.11940298507462686, 0.11940298507462686, 0.11940298507462686, 0.11940298507462686, 0.11940298507462686, 0.12686567164179105, 0.12686567164179105, 0.13432835820895522, 0.1417910447761194, 0.1417910447761194, 0.8432835820895522, 0.1417910447761194, 0.1417910447761194, 0.14925373134328357, 0.14925373134328357, 0.14925373134328357, 0.14925373134328357, 0.14925373134328357, 0.16417910447761194, 0.15671641791044777, 0.15671641791044777, 0.15671641791044777, 0.15671641791044777, 0.15671641791044777, 0.15671641791044777, 0.15671641791044777, 0.17164179104477612, 0.17164179104477612, 0.1791044776119403, 0.1791044776119403, 0.1791044776119403, 0.1865671641791045, 0.19402985074626866, 0.5447761194029851], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/YcxB.gap.json b/pfam_gap_rates/YcxB.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..17459a0b8645ec7e01688a4766cb60a5e6e2ab98
--- /dev/null
+++ b/pfam_gap_rates/YcxB.gap.json
@@ -0,0 +1 @@
+{"family": "YcxB", "n_seqs": 365, "length": 67, "gap_rates": [0.4684931506849315, 0.29863013698630136, 0.2136986301369863, 0.19452054794520549, 0.16986301369863013, 0.1506849315068493, 0.136986301369863, 0.12054794520547946, 0.947945205479452, 0.1178082191780822, 0.09863013698630137, 0.9342465753424658, 0.07671232876712329, 0.0547945205479452, 0.03561643835616438, 0.0273972602739726, 0.021917808219178082, 0.019178082191780823, 0.01643835616438356, 0.010958904109589041, 0.010958904109589041, 0.00821917808219178, 0.005479452054794521, 0.0027397260273972603, 0.0027397260273972603, 0.0027397260273972603, 0.0027397260273972603, 0.0027397260273972603, 0.0027397260273972603, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.00821917808219178, 0.005479452054794521, 0.0, 0.0027397260273972603, 0.005479452054794521, 0.021917808219178082, 0.947945205479452, 0.0, 0.0, 0.0, 0.0027397260273972603, 0.005479452054794521, 0.0027397260273972603, 0.0027397260273972603, 0.005479452054794521, 0.0136986301369863, 0.019178082191780823, 0.024657534246575342, 0.947945205479452, 0.6465753424657534, 0.26301369863013696, 0.13972602739726028, 0.14520547945205478, 0.1643835616438356, 0.14794520547945206, 0.18356164383561643, 0.2054794520547945, 0.2547945205479452, 0.3150684931506849, 0.3643835616438356, 0.4684931506849315, 0.7863013698630137], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/YfiO.gap.json b/pfam_gap_rates/YfiO.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..bec1e7725b12685f543b337050ba94c1a7e5119a
--- /dev/null
+++ b/pfam_gap_rates/YfiO.gap.json
@@ -0,0 +1 @@
+{"family": "YfiO", "n_seqs": 1371, "length": 208, "gap_rates": [0.8563092633114515, 0.7279358132749818, 0.5280816921954777, 0.3770970094821298, 0.30488694383661563, 0.26404084609773887, 0.21079504011670314, 0.16776075857038658, 0.15973741794310722, 0.14952589350838805, 0.13420860685630925, 0.12910284463894967, 0.12399708242159008, 0.12107950401167031, 0.10867979576951131, 0.10430342815463166, 0.10065645514223195, 0.09336250911743253, 0.087527352297593, 0.08169219547775347, 0.07658643326039387, 0.07221006564551423, 0.0700218818380744, 0.06491611962071481, 0.06418672501823487, 0.061269146608315096, 0.058351568198395334, 0.058351568198395334, 0.058351568198395334, 0.05908096280087528, 0.05908096280087528, 0.05762217359591539, 0.05908096280087528, 0.06345733041575492, 0.060539752005835154, 0.05616338439095551, 0.05397520058351568, 0.05397520058351568, 0.05032822757111598, 0.05032822757111598, 0.045951859956236324, 0.0437636761487965, 0.04449307075127644, 0.040846097738876735, 0.03865791393143691, 0.03574033552151714, 0.034281546316557256, 0.03282275711159737, 0.032093362509117436, 0.029175784099197667, 0.025528811086797956, 0.02261123267687819, 0.020423048869438368, 0.019693654266958426, 0.016776075857038657, 0.014587892049598834, 0.014587892049598834, 0.01312910284463895, 0.012399708242159009, 0.011670313639679067, 0.011670313639679067, 0.011670313639679067, 0.011670313639679067, 0.013858497447118891, 0.013858497447118891, 0.015317286652078774, 0.016046681254558718, 0.013858497447118891, 0.013858497447118891, 0.01312910284463895, 0.015317286652078774, 0.016046681254558718, 0.013858497447118891, 0.016776075857038657, 0.0175054704595186, 0.023340627279358133, 0.027716994894237783, 0.030634573304157548, 0.04011670313639679, 0.045951859956236324, 0.06345733041575492, 0.0736688548504741, 0.07804522246535375, 0.07731582786287382, 0.0736688548504741, 0.07439824945295405, 0.0824215900802334, 0.09409190371991247, 0.10795040116703136, 0.11670313639679067, 0.13566739606126915, 0.1575492341356674, 0.16338439095550694, 0.17943107221006566, 0.19037199124726478, 0.712618526622903, 0.7366885485047411, 0.7403355215171408, 0.74981765134938, 0.7578409919766593, 0.7439824945295405, 0.738147337709701, 0.7337709700948213, 0.6900072939460248, 0.687819110138585, 0.2975929978118162, 0.2735229759299781, 0.2647702407002188, 0.25018234865062, 0.23048869438366157, 0.2275711159737418, 0.21808898614150254, 0.20933625091174327, 0.1473377097009482, 0.14952589350838805, 0.15171407731582787, 0.15098468271334792, 0.15025528811086797, 0.14806710430342815, 0.1473377097009482, 0.1473377097009482, 0.14806710430342815, 0.15244347191830782, 0.1539022611232677, 0.15463165572574764, 0.15536105032822758, 0.15536105032822758, 0.1560904449307075, 0.15827862873814733, 0.162654996353027, 0.16849015317286653, 0.1699489423778264, 0.17286652078774617, 0.17359591539022612, 0.17359591539022612, 0.18016046681254558, 0.18599562363238512, 0.1962071480671043, 0.20714806710430342, 0.2188183807439825, 0.23413566739606126, 0.25601750547045954, 0.29321663019693656, 0.33916849015317285, 0.3522975929978118, 0.3544857768052516, 0.3661560904449307, 0.3741794310722101, 0.37563822027717, 0.37928519328956967, 0.3800145878920496, 0.3800145878920496, 0.38074398249452956, 0.38147337709700946, 0.3822027716994894, 0.38293216630196936, 0.38293216630196936, 0.38584974471188915, 0.3887673231218089, 0.39460247994164843, 0.3967906637490883, 0.40189642596644787, 0.40700218818380746, 0.4259664478482859, 0.4361779722830051, 0.4434719183078045, 0.450036469730124, 0.4551422319474836, 0.4566010211524435, 0.4566010211524435, 0.4566010211524435, 0.4566010211524435, 0.45587162654996355, 0.4566010211524435, 0.4573304157549234, 0.45805981035740334, 0.45951859956236324, 0.4587892049598833, 0.4587892049598833, 0.4587892049598833, 0.4602479941648432, 0.46097738876732314, 0.46097738876732314, 0.4646243617797228, 0.4682713347921225, 0.4762946754194019, 0.48067104303428154, 0.48212983223924144, 0.4886943836615609, 0.4974471188913202, 0.5018234865061999, 0.5091174325309993, 0.5156819839533188, 0.5193289569657185, 0.5229759299781181, 0.5266229029905178, 0.5324580598103574, 0.5390226112326769, 0.5463165572574763, 0.550692924872356, 0.5638220277169949, 0.5762217359591539, 0.587162654996353, 0.6017505470459519, 0.6192560175054704, 0.6520787746170679, 0.8242159008023341, 0.9401896425966448], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/YlzJ.gap.json b/pfam_gap_rates/YlzJ.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..03370293cc5d9eb89ad801bd3b37589a943c1681
--- /dev/null
+++ b/pfam_gap_rates/YlzJ.gap.json
@@ -0,0 +1 @@
+{"family": "YlzJ", "n_seqs": 137, "length": 68, "gap_rates": [0.2116788321167883, 0.051094890510948905, 0.051094890510948905, 0.043795620437956206, 0.029197080291970802, 0.029197080291970802, 0.029197080291970802, 0.029197080291970802, 0.029197080291970802, 0.029197080291970802, 0.029197080291970802, 0.029197080291970802, 0.029197080291970802, 0.0364963503649635, 0.927007299270073, 0.8102189781021898, 0.22627737226277372, 0.08759124087591241, 0.051094890510948905, 0.021897810218978103, 0.014598540145985401, 0.0072992700729927005, 0.0072992700729927005, 0.0072992700729927005, 0.0072992700729927005, 0.0072992700729927005, 0.0072992700729927005, 0.0072992700729927005, 0.948905109489051, 0.0072992700729927005, 0.0072992700729927005, 0.0072992700729927005, 0.014598540145985401, 0.014598540145985401, 0.014598540145985401, 0.014598540145985401, 0.014598540145985401, 0.021897810218978103, 0.072992700729927, 0.021897810218978103, 0.0364963503649635, 0.0364963503649635, 0.021897810218978103, 0.0072992700729927005, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.043795620437956206, 0.051094890510948905, 0.0072992700729927005, 0.0072992700729927005, 0.014598540145985401, 0.014598540145985401, 0.021897810218978103, 0.0364963503649635, 0.06569343065693431, 0.24087591240875914], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/YoeB_toxin.gap.json b/pfam_gap_rates/YoeB_toxin.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..2528d1bd9d1de817c009f8a90bf7541bf07a825c
--- /dev/null
+++ b/pfam_gap_rates/YoeB_toxin.gap.json
@@ -0,0 +1 @@
+{"family": "YoeB_toxin", "n_seqs": 609, "length": 83, "gap_rates": [0.3021346469622332, 0.2857142857142857, 0.2627257799671593, 0.2594417077175698, 0.25779967159277506, 0.2545155993431856, 0.24794745484400657, 0.24302134646962234, 0.24302134646962234, 0.23973727422003285, 0.23316912972085385, 0.22824302134646962, 0.21674876847290642, 0.2134646962233169, 0.20525451559934318, 0.20525451559934318, 0.18555008210180624, 0.16420361247947454, 0.13628899835796388, 0.09688013136288999, 0.04926108374384237, 0.03284072249589491, 0.031198686371100164, 0.029556650246305417, 0.027914614121510674, 0.026272577996715927, 0.024630541871921183, 0.022988505747126436, 0.019704433497536946, 0.019704433497536946, 0.0180623973727422, 0.013136288998357963, 0.013136288998357963, 0.9277504105090312, 0.013136288998357963, 0.013136288998357963, 0.016420361247947456, 0.0180623973727422, 0.021346469622331693, 0.024630541871921183, 0.021346469622331693, 0.022988505747126436, 0.016420361247947456, 0.014778325123152709, 0.014778325123152709, 0.013136288998357963, 0.016420361247947456, 0.016420361247947456, 0.04433497536945813, 0.0361247947454844, 0.019704433497536946, 0.0180623973727422, 0.0180623973727422, 0.0180623973727422, 0.019704433497536946, 0.019704433497536946, 0.019704433497536946, 0.019704433497536946, 0.021346469622331693, 0.021346469622331693, 0.021346469622331693, 0.022988505747126436, 0.022988505747126436, 0.026272577996715927, 0.026272577996715927, 0.026272577996715927, 0.027914614121510674, 0.031198686371100164, 0.8653530377668309, 0.8456486042692939, 0.034482758620689655, 0.034482758620689655, 0.03776683087027915, 0.041050903119868636, 0.042692939244663386, 0.04926108374384237, 0.054187192118226604, 0.059113300492610835, 0.06896551724137931, 0.06896551724137931, 0.0722495894909688, 0.0755336617405583, 0.09195402298850575], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/YozE_SAM_like.gap.json b/pfam_gap_rates/YozE_SAM_like.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..30ecd74eba4a91fc909be9d27cf07c31bea8b844
--- /dev/null
+++ b/pfam_gap_rates/YozE_SAM_like.gap.json
@@ -0,0 +1 @@
+{"family": "YozE_SAM_like", "n_seqs": 162, "length": 67, "gap_rates": [0.17901234567901234, 0.06790123456790123, 0.06790123456790123, 0.06790123456790123, 0.06790123456790123, 0.06790123456790123, 0.012345679012345678, 0.012345679012345678, 0.012345679012345678, 0.012345679012345678, 0.012345679012345678, 0.09259259259259259, 0.14814814814814814, 0.012345679012345678, 0.006172839506172839, 0.006172839506172839, 0.006172839506172839, 0.006172839506172839, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.030864197530864196, 0.0, 0.012345679012345678, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.006172839506172839, 0.006172839506172839, 0.006172839506172839, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.006172839506172839, 0.006172839506172839, 0.006172839506172839, 0.04938271604938271, 0.6481481481481481], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/YqeY.gap.json b/pfam_gap_rates/YqeY.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..8aea29b45f5a2c94f56b77d315229c9462960820
--- /dev/null
+++ b/pfam_gap_rates/YqeY.gap.json
@@ -0,0 +1 @@
+{"family": "YqeY", "n_seqs": 1826, "length": 151, "gap_rates": [0.6675794085432639, 0.18893756845564075, 0.08652792990142388, 0.06133625410733844, 0.060240963855421686, 0.056955093099671415, 0.054764512595837894, 0.047097480832420595, 0.045454545454545456, 0.0443592552026287, 0.04271631982475356, 0.029572836801752465, 0.029025191675794086, 0.028477546549835708, 0.027382256297918947, 0.027382256297918947, 0.029025191675794086, 0.028477546549835708, 0.02683461117196057, 0.02628696604600219, 0.024096385542168676, 0.023548740416210297, 0.023548740416210297, 0.023548740416210297, 0.02135815991237678, 0.019715224534501644, 0.019167579408543262, 0.019167579408543262, 0.016976998904709748, 0.01642935377875137, 0.01642935377875137, 0.018619934282584884, 0.019167579408543262, 0.02190580503833516, 0.02190580503833516, 0.019715224534501644, 0.018072289156626505, 0.0208105147864184, 0.023001095290251915, 0.6177437020810514, 0.8450164293537787, 0.9211391018619934, 0.7847754654983571, 0.5399780941949617, 0.016976998904709748, 0.019167579408543262, 0.016976998904709748, 0.017524644030668127, 0.018619934282584884, 0.019167579408543262, 0.019167579408543262, 0.019167579408543262, 0.018072289156626505, 0.018072289156626505, 0.018072289156626505, 0.018619934282584884, 0.019167579408543262, 0.018072289156626505, 0.017524644030668127, 0.017524644030668127, 0.018072289156626505, 0.018072289156626505, 0.017524644030668127, 0.017524644030668127, 0.018072289156626505, 0.018619934282584884, 0.018619934282584884, 0.025191675794085433, 0.03888280394304491, 0.03888280394304491, 0.024096385542168676, 0.024644030668127054, 0.023548740416210297, 0.024096385542168676, 0.023548740416210297, 0.025191675794085433, 0.02792990142387733, 0.02683461117196057, 0.024096385542168676, 0.024644030668127054, 0.023001095290251915, 0.018619934282584884, 0.018619934282584884, 0.018072289156626505, 0.017524644030668127, 0.016976998904709748, 0.016976998904709748, 0.01588170865279299, 0.01642935377875137, 0.01588170865279299, 0.01642935377875137, 0.016976998904709748, 0.02135815991237678, 0.022453450164293537, 0.024096385542168676, 0.024096385542168676, 0.024644030668127054, 0.02628696604600219, 0.02628696604600219, 0.027382256297918947, 0.027382256297918947, 0.027382256297918947, 0.02792990142387733, 0.028477546549835708, 0.027382256297918947, 0.029572836801752465, 0.03231106243154436, 0.03888280394304491, 0.04107338444687842, 0.04326396495071194, 0.04381161007667032, 0.0443592552026287, 0.04326396495071194, 0.047097480832420595, 0.05093099671412924, 0.9145673603504929, 0.9463307776560789, 0.8986856516976999, 0.04874041621029573, 0.061883899233296825, 0.04874041621029573, 0.06133625410733844, 0.05805038335158817, 0.03723986856516977, 0.033953997809419496, 0.033953997809419496, 0.033406352683461114, 0.033406352683461114, 0.033953997809419496, 0.033953997809419496, 0.03778751369112815, 0.0416210295728368, 0.04600219058050383, 0.04654983570646221, 0.04764512595837897, 0.05257393209200438, 0.05093099671412924, 0.04874041621029573, 0.05147864184008762, 0.052026286966046005, 0.052026286966046005, 0.05312157721796276, 0.05257393209200438, 0.055312157721796276, 0.05914567360350493, 0.0624315443592552, 0.06681270536692223, 0.07886089813800658, 0.10021905805038335, 0.1746987951807229, 0.2261774370208105], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/YscJ_FliF.gap.json b/pfam_gap_rates/YscJ_FliF.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..95986813c24cf92372c5bf32ffab173b08aa008c
--- /dev/null
+++ b/pfam_gap_rates/YscJ_FliF.gap.json
@@ -0,0 +1 @@
+{"family": "YscJ_FliF", "n_seqs": 1005, "length": 197, "gap_rates": [0.4407960199004975, 0.21293532338308457, 0.14029850746268657, 0.1154228855721393, 0.10248756218905472, 0.08955223880597014, 0.07661691542288557, 0.06766169154228856, 0.06069651741293532, 0.056716417910447764, 0.051741293532338306, 0.04875621890547264, 0.046766169154228855, 0.045771144278606964, 0.04477611940298507, 0.04477611940298507, 0.045771144278606964, 0.050746268656716415, 0.07263681592039802, 0.03383084577114428, 0.025870646766169153, 0.020895522388059702, 0.01890547263681592, 0.051741293532338306, 0.01791044776119403, 0.01791044776119403, 0.01791044776119403, 0.01691542288557214, 0.015920398009950248, 0.015920398009950248, 0.015920398009950248, 0.01791044776119403, 0.01791044776119403, 0.015920398009950248, 0.015920398009950248, 0.015920398009950248, 0.015920398009950248, 0.014925373134328358, 0.012935323383084577, 0.012935323383084577, 0.012935323383084577, 0.012935323383084577, 0.012935323383084577, 0.012935323383084577, 0.012935323383084577, 0.013930348258706468, 0.013930348258706468, 0.012935323383084577, 0.012935323383084577, 0.11343283582089553, 0.22786069651741295, 0.9402985074626866, 0.9373134328358209, 0.026865671641791045, 0.013930348258706468, 0.014925373134328358, 0.012935323383084577, 0.011940298507462687, 0.011940298507462687, 0.011940298507462687, 0.010945273631840797, 0.009950248756218905, 0.009950248756218905, 0.009950248756218905, 0.010945273631840797, 0.010945273631840797, 0.011940298507462687, 0.011940298507462687, 0.010945273631840797, 0.010945273631840797, 0.009950248756218905, 0.009950248756218905, 0.009950248756218905, 0.009950248756218905, 0.029850746268656716, 0.012935323383084577, 0.01890547263681592, 0.07064676616915423, 0.01791044776119403, 0.11044776119402985, 0.8169154228855722, 0.08059701492537313, 0.031840796019900496, 0.01990049751243781, 0.01691542288557214, 0.8995024875621891, 0.010945273631840797, 0.010945273631840797, 0.010945273631840797, 0.010945273631840797, 0.5592039800995025, 0.020895522388059702, 0.008955223880597015, 0.008955223880597015, 0.008955223880597015, 0.008955223880597015, 0.008955223880597015, 0.008955223880597015, 0.009950248756218905, 0.008955223880597015, 0.007960199004975124, 0.007960199004975124, 0.007960199004975124, 0.007960199004975124, 0.007960199004975124, 0.008955223880597015, 0.007960199004975124, 0.006965174129353234, 0.006965174129353234, 0.006965174129353234, 0.006965174129353234, 0.006965174129353234, 0.006965174129353234, 0.006965174129353234, 0.006965174129353234, 0.006965174129353234, 0.006965174129353234, 0.006965174129353234, 0.006965174129353234, 0.006965174129353234, 0.006965174129353234, 0.006965174129353234, 0.006965174129353234, 0.006965174129353234, 0.006965174129353234, 0.006965174129353234, 0.006965174129353234, 0.006965174129353234, 0.006965174129353234, 0.006965174129353234, 0.006965174129353234, 0.006965174129353234, 0.006965174129353234, 0.007960199004975124, 0.012935323383084577, 0.009950248756218905, 0.009950248756218905, 0.011940298507462687, 0.013930348258706468, 0.011940298507462687, 0.83681592039801, 0.03781094527363184, 0.9303482587064676, 0.01791044776119403, 0.011940298507462687, 0.009950248756218905, 0.009950248756218905, 0.008955223880597015, 0.009950248756218905, 0.010945273631840797, 0.010945273631840797, 0.010945273631840797, 0.010945273631840797, 0.010945273631840797, 0.010945273631840797, 0.010945273631840797, 0.011940298507462687, 0.028855721393034824, 0.05373134328358209, 0.1771144278606965, 0.09651741293532339, 0.011940298507462687, 0.013930348258706468, 0.04477611940298507, 0.011940298507462687, 0.013930348258706468, 0.014925373134328358, 0.011940298507462687, 0.029850746268656716, 0.011940298507462687, 0.011940298507462687, 0.012935323383084577, 0.011940298507462687, 0.011940298507462687, 0.011940298507462687, 0.011940298507462687, 0.011940298507462687, 0.012935323383084577, 0.01691542288557214, 0.012935323383084577, 0.011940298507462687, 0.011940298507462687, 0.015920398009950248, 0.01691542288557214, 0.01691542288557214, 0.01691542288557214, 0.01791044776119403, 0.01990049751243781, 0.03283582089552239, 0.08258706467661692, 0.0945273631840796, 0.10049751243781095, 0.1253731343283582, 0.14228855721393036, 0.17114427860696518, 0.2298507462686567, 0.32736318407960197], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Ytp1.gap.json b/pfam_gap_rates/Ytp1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..1f7d749d8851fd076ebd5a1ade4c58d983c6ab69
--- /dev/null
+++ b/pfam_gap_rates/Ytp1.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/YwiC.gap.json b/pfam_gap_rates/YwiC.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e93fa5611797dbd181d6437941d66c347590f7ba
--- /dev/null
+++ b/pfam_gap_rates/YwiC.gap.json
@@ -0,0 +1 @@
+{"family": "YwiC", "n_seqs": 123, "length": 143, "gap_rates": [0.2764227642276423, 0.16260162601626016, 0.12195121951219512, 0.12195121951219512, 0.12195121951219512, 0.12195121951219512, 0.12195121951219512, 0.12195121951219512, 0.12195121951219512, 0.016260162601626018, 0.016260162601626018, 0.016260162601626018, 0.016260162601626018, 0.016260162601626018, 0.016260162601626018, 0.016260162601626018, 0.016260162601626018, 0.016260162601626018, 0.016260162601626018, 0.016260162601626018, 0.016260162601626018, 0.04065040650406504, 0.08943089430894309, 0.8943089430894309, 0.9024390243902439, 0.943089430894309, 0.943089430894309, 0.9349593495934959, 0.9024390243902439, 0.7804878048780488, 0.016260162601626018, 0.016260162601626018, 0.024390243902439025, 0.016260162601626018, 0.016260162601626018, 0.008130081300813009, 0.008130081300813009, 0.008130081300813009, 0.008130081300813009, 0.008130081300813009, 0.008130081300813009, 0.008130081300813009, 0.008130081300813009, 0.008130081300813009, 0.008130081300813009, 0.008130081300813009, 0.008130081300813009, 0.008130081300813009, 0.008130081300813009, 0.008130081300813009, 0.008130081300813009, 0.008130081300813009, 0.008130081300813009, 0.0, 0.0, 0.0, 0.0, 0.008130081300813009, 0.6910569105691057, 0.8536585365853658, 0.8699186991869918, 0.9024390243902439, 0.8699186991869918, 0.7723577235772358, 0.6260162601626016, 0.008130081300813009, 0.8943089430894309, 0.8536585365853658, 0.008130081300813009, 0.008130081300813009, 0.008130081300813009, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.016260162601626018, 0.016260162601626018, 0.016260162601626018, 0.016260162601626018, 0.016260162601626018, 0.016260162601626018, 0.016260162601626018, 0.016260162601626018, 0.016260162601626018, 0.016260162601626018, 0.8780487804878049, 0.016260162601626018, 0.016260162601626018, 0.024390243902439025, 0.024390243902439025, 0.024390243902439025, 0.024390243902439025, 0.024390243902439025, 0.024390243902439025, 0.024390243902439025, 0.024390243902439025, 0.024390243902439025, 0.024390243902439025, 0.024390243902439025, 0.024390243902439025, 0.024390243902439025, 0.024390243902439025, 0.024390243902439025, 0.024390243902439025, 0.024390243902439025, 0.024390243902439025, 0.024390243902439025, 0.024390243902439025, 0.032520325203252036, 0.032520325203252036, 0.032520325203252036, 0.032520325203252036, 0.032520325203252036, 0.032520325203252036, 0.032520325203252036, 0.032520325203252036, 0.032520325203252036, 0.032520325203252036, 0.032520325203252036, 0.032520325203252036, 0.032520325203252036, 0.032520325203252036, 0.04065040650406504, 0.04065040650406504, 0.04065040650406504, 0.04878048780487805, 0.056910569105691054, 0.07317073170731707, 0.0975609756097561, 0.21951219512195122, 0.6666666666666666], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/ZT_dimer.gap.json b/pfam_gap_rates/ZT_dimer.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..0379f5c65677e99747ad6bd24e33875bbbf648ee
--- /dev/null
+++ b/pfam_gap_rates/ZT_dimer.gap.json
@@ -0,0 +1 @@
+{"family": "ZT_dimer", "n_seqs": 2609, "length": 83, "gap_rates": [0.8980452280567267, 0.5254886929858184, 0.3614411651973936, 0.2790341126868532, 0.22077424300498275, 0.17286316596397086, 0.12801839785358374, 0.10578765810655423, 0.08892295898811806, 0.07895745496358758, 0.07282483710233806, 0.06324262169413568, 0.05902644691452664, 0.8769643541586815, 0.052893829053277115, 0.04752778842468379, 0.9141433499425067, 0.039862016098121886, 0.026830203142966653, 0.019164430816404752, 0.02108087389804523, 0.010732081257186662, 0.006899195093905711, 0.0030663089306247606, 0.0022997316979685703, 0.0022997316979685703, 0.0019164430816404753, 0.0015331544653123803, 0.0015331544653123803, 0.0011498658489842851, 0.0015331544653123803, 0.0011498658489842851, 0.0007665772326561902, 0.9198926791874281, 0.009582215408202376, 0.9428899961671139, 0.0003832886163280951, 0.0003832886163280951, 0.0003832886163280951, 0.0003832886163280951, 0.0003832886163280951, 0.0007665772326561902, 0.0007665772326561902, 0.0003832886163280951, 0.0003832886163280951, 0.0, 0.005366040628593331, 0.0019164430816404753, 0.0007665772326561902, 0.03027980068991951, 0.0003832886163280951, 0.0003832886163280951, 0.0007665772326561902, 0.0011498658489842851, 0.0007665772326561902, 0.0003832886163280951, 0.0003832886163280951, 0.0003832886163280951, 0.0003832886163280951, 0.0003832886163280951, 0.0007665772326561902, 0.0011498658489842851, 0.0011498658489842851, 0.0011498658489842851, 0.0011498658489842851, 0.0011498658489842851, 0.0034495975469528554, 0.1782292065925642, 0.025297048677654272, 0.02491376006132618, 0.2165580682253737, 0.012648524338827136, 0.20160981218857799, 0.1314679954005366, 0.036029129934840934, 0.026830203142966653, 0.027596780375622843, 0.03717899578382522, 0.05902644691452664, 0.0778075891146033, 0.09697201993100805, 0.32311230356458415, 0.6726715216558068], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Zds_C.gap.json b/pfam_gap_rates/Zds_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..22b8fbc6dc32750444874b51e74f59db823bd60e
--- /dev/null
+++ b/pfam_gap_rates/Zds_C.gap.json
@@ -0,0 +1 @@
+{"family": "Zds_C", "n_seqs": 136, "length": 52, "gap_rates": [0.6911764705882353, 0.375, 0.35294117647058826, 0.3088235294117647, 0.27205882352941174, 0.16911764705882354, 0.09558823529411764, 0.051470588235294115, 0.022058823529411766, 0.022058823529411766, 0.014705882352941176, 0.014705882352941176, 0.014705882352941176, 0.007352941176470588, 0.007352941176470588, 0.007352941176470588, 0.007352941176470588, 0.007352941176470588, 0.007352941176470588, 0.007352941176470588, 0.007352941176470588, 0.007352941176470588, 0.007352941176470588, 0.007352941176470588, 0.007352941176470588, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.007352941176470588, 0.007352941176470588, 0.007352941176470588, 0.007352941176470588, 0.007352941176470588, 0.007352941176470588, 0.007352941176470588, 0.007352941176470588, 0.007352941176470588, 0.007352941176470588, 0.014705882352941176, 0.022058823529411766, 0.09558823529411764, 0.17647058823529413], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Zein-binding.gap.json b/pfam_gap_rates/Zein-binding.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..510add346ae087216a50c9fbadc1448cbd09a6a9
--- /dev/null
+++ b/pfam_gap_rates/Zein-binding.gap.json
@@ -0,0 +1 @@
+{"family": "Zein-binding", "n_seqs": 323, "length": 91, "gap_rates": [0.23529411764705882, 0.1238390092879257, 0.11145510835913312, 0.10526315789473684, 0.1021671826625387, 0.09907120743034056, 0.09597523219814241, 0.08668730650154799, 0.08359133126934984, 0.08359133126934984, 0.07430340557275542, 0.07120743034055728, 0.06811145510835913, 0.06811145510835913, 0.06191950464396285, 0.058823529411764705, 0.058823529411764705, 0.058823529411764705, 0.058823529411764705, 0.058823529411764705, 0.058823529411764705, 0.05572755417956656, 0.05572755417956656, 0.05572755417956656, 0.05572755417956656, 0.05572755417956656, 0.05572755417956656, 0.05572755417956656, 0.05263157894736842, 0.05263157894736842, 0.05263157894736842, 0.04953560371517028, 0.04953560371517028, 0.04643962848297214, 0.018575851393188854, 0.015479876160990712, 0.01238390092879257, 0.01238390092879257, 0.01238390092879257, 0.01238390092879257, 0.009287925696594427, 0.009287925696594427, 0.009287925696594427, 0.009287925696594427, 0.009287925696594427, 0.009287925696594427, 0.009287925696594427, 0.006191950464396285, 0.006191950464396285, 0.0030959752321981426, 0.0030959752321981426, 0.0030959752321981426, 0.0030959752321981426, 0.0030959752321981426, 0.0030959752321981426, 0.006191950464396285, 0.006191950464396285, 0.006191950464396285, 0.006191950464396285, 0.006191950464396285, 0.009287925696594427, 0.009287925696594427, 0.009287925696594427, 0.009287925696594427, 0.009287925696594427, 0.009287925696594427, 0.01238390092879257, 0.01238390092879257, 0.01238390092879257, 0.01238390092879257, 0.015479876160990712, 0.015479876160990712, 0.015479876160990712, 0.021671826625386997, 0.02476780185758514, 0.030959752321981424, 0.03715170278637771, 0.03715170278637771, 0.04024767801857585, 0.05263157894736842, 0.05263157894736842, 0.058823529411764705, 0.06191950464396285, 0.06191950464396285, 0.07120743034055728, 0.07430340557275542, 0.07430340557275542, 0.08359133126934984, 0.09597523219814241, 0.11145510835913312, 0.2631578947368421], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/ZinT.gap.json b/pfam_gap_rates/ZinT.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d3f29e91f168687d7b9b2d9c6c47e289a9437638
--- /dev/null
+++ b/pfam_gap_rates/ZinT.gap.json
@@ -0,0 +1 @@
+{"family": "ZinT", "n_seqs": 102, "length": 189, "gap_rates": [0.5490196078431373, 0.4215686274509804, 0.3431372549019608, 0.29411764705882354, 0.28431372549019607, 0.2647058823529412, 0.2647058823529412, 0.2549019607843137, 0.22549019607843138, 0.20588235294117646, 0.19607843137254902, 0.18627450980392157, 0.17647058823529413, 0.17647058823529413, 0.16666666666666666, 0.14705882352941177, 0.10784313725490197, 0.08823529411764706, 0.08823529411764706, 0.0784313725490196, 0.0784313725490196, 0.0784313725490196, 0.0784313725490196, 0.0784313725490196, 0.0784313725490196, 0.0784313725490196, 0.0784313725490196, 0.0784313725490196, 0.0784313725490196, 0.0784313725490196, 0.0784313725490196, 0.0784313725490196, 0.0784313725490196, 0.0784313725490196, 0.0784313725490196, 0.0784313725490196, 0.0784313725490196, 0.0784313725490196, 0.0784313725490196, 0.0784313725490196, 0.0784313725490196, 0.06862745098039216, 0.06862745098039216, 0.0784313725490196, 0.0784313725490196, 0.0784313725490196, 0.9117647058823529, 0.47058823529411764, 0.058823529411764705, 0.058823529411764705, 0.049019607843137254, 0.06862745098039216, 0.058823529411764705, 0.058823529411764705, 0.058823529411764705, 0.058823529411764705, 0.058823529411764705, 0.06862745098039216, 0.049019607843137254, 0.049019607843137254, 0.049019607843137254, 0.049019607843137254, 0.049019607843137254, 0.049019607843137254, 0.049019607843137254, 0.049019607843137254, 0.06862745098039216, 0.0392156862745098, 0.0392156862745098, 0.0392156862745098, 0.0392156862745098, 0.0392156862745098, 0.0392156862745098, 0.0392156862745098, 0.0392156862745098, 0.0392156862745098, 0.9215686274509803, 0.0392156862745098, 0.029411764705882353, 0.029411764705882353, 0.029411764705882353, 0.029411764705882353, 0.029411764705882353, 0.029411764705882353, 0.8137254901960784, 0.029411764705882353, 0.8627450980392157, 0.8823529411764706, 0.8725490196078431, 0.8529411764705882, 0.029411764705882353, 0.029411764705882353, 0.029411764705882353, 0.029411764705882353, 0.029411764705882353, 0.029411764705882353, 0.029411764705882353, 0.029411764705882353, 0.029411764705882353, 0.029411764705882353, 0.029411764705882353, 0.029411764705882353, 0.0392156862745098, 0.029411764705882353, 0.0392156862745098, 0.049019607843137254, 0.0392156862745098, 0.029411764705882353, 0.0392156862745098, 0.049019607843137254, 0.0392156862745098, 0.029411764705882353, 0.029411764705882353, 0.029411764705882353, 0.0392156862745098, 0.049019607843137254, 0.0392156862745098, 0.029411764705882353, 0.8431372549019608, 0.029411764705882353, 0.029411764705882353, 0.029411764705882353, 0.029411764705882353, 0.058823529411764705, 0.049019607843137254, 0.049019607843137254, 0.058823529411764705, 0.058823529411764705, 0.06862745098039216, 0.09803921568627451, 0.049019607843137254, 0.049019607843137254, 0.0392156862745098, 0.029411764705882353, 0.029411764705882353, 0.029411764705882353, 0.0392156862745098, 0.0392156862745098, 0.13725490196078433, 0.17647058823529413, 0.0784313725490196, 0.049019607843137254, 0.049019607843137254, 0.049019607843137254, 0.0392156862745098, 0.8823529411764706, 0.0392156862745098, 0.058823529411764705, 0.058823529411764705, 0.058823529411764705, 0.049019607843137254, 0.049019607843137254, 0.049019607843137254, 0.049019607843137254, 0.049019607843137254, 0.049019607843137254, 0.049019607843137254, 0.049019607843137254, 0.049019607843137254, 0.049019607843137254, 0.49019607843137253, 0.0784313725490196, 0.06862745098039216, 0.0784313725490196, 0.0784313725490196, 0.0784313725490196, 0.0784313725490196, 0.0784313725490196, 0.08823529411764706, 0.0784313725490196, 0.0784313725490196, 0.0784313725490196, 0.0784313725490196, 0.0784313725490196, 0.0784313725490196, 0.0784313725490196, 0.0784313725490196, 0.0784313725490196, 0.0784313725490196, 0.0784313725490196, 0.0784313725490196, 0.08823529411764706, 0.08823529411764706, 0.08823529411764706, 0.10784313725490197, 0.13725490196078433, 0.19607843137254902, 0.28431372549019607, 0.28431372549019607], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Zip.gap.json b/pfam_gap_rates/Zip.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..5f8ea3e96bfc35eb873153e21346569bc75c19a5
--- /dev/null
+++ b/pfam_gap_rates/Zip.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/Zn_dep_PLPC.gap.json b/pfam_gap_rates/Zn_dep_PLPC.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..0c842fefb2723d37a3e52d86665f3ec1e9c798ec
--- /dev/null
+++ b/pfam_gap_rates/Zn_dep_PLPC.gap.json
@@ -0,0 +1 @@
+{"family": "Zn_dep_PLPC", "n_seqs": 459, "length": 241, "gap_rates": [0.40522875816993464, 0.2047930283224401, 0.20043572984749455, 0.19825708061002179, 0.1895424836601307, 0.19607843137254902, 0.18082788671023964, 0.1721132897603486, 0.16775599128540306, 0.16122004357298475, 0.15904139433551198, 0.9389978213507625, 0.15468409586056645, 0.1721132897603486, 0.8867102396514162, 0.20261437908496732, 0.3790849673202614, 0.25925925925925924, 0.25272331154684097, 0.2440087145969499, 0.4596949891067538, 0.48148148148148145, 0.41612200435729846, 0.6514161220043573, 0.8867102396514162, 0.9411764705882353, 0.9281045751633987, 0.8148148148148148, 0.5686274509803921, 0.1503267973856209, 0.12636165577342048, 0.05664488017429194, 0.05010893246187364, 0.032679738562091505, 0.026143790849673203, 0.023965141612200435, 0.02178649237472767, 0.02178649237472767, 0.02178649237472767, 0.0196078431372549, 0.017429193899782137, 0.017429193899782137, 0.017429193899782137, 0.017429193899782137, 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\ No newline at end of file
diff --git a/pfam_gap_rates/Zn_protease.gap.json b/pfam_gap_rates/Zn_protease.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..0b403f1490fe14c67101071134b05133614a5367
--- /dev/null
+++ b/pfam_gap_rates/Zn_protease.gap.json
@@ -0,0 +1 @@
+{"family": "Zn_protease", "n_seqs": 507, "length": 146, "gap_rates": [0.4635108481262327, 0.16568047337278108, 0.1341222879684418, 0.1341222879684418, 0.13214990138067062, 0.1282051282051282, 0.126232741617357, 0.1242603550295858, 0.11637080867850098, 0.11439842209072978, 0.1203155818540434, 0.11834319526627218, 0.10848126232741617, 0.10256410256410256, 0.10059171597633136, 0.09270216962524655, 0.42209072978303747, 0.08481262327416174, 0.08481262327416174, 0.08284023668639054, 0.08086785009861933, 0.08086785009861933, 0.08086785009861933, 0.08086785009861933, 0.08086785009861933, 0.07297830374753451, 0.07297830374753451, 0.07100591715976332, 0.07100591715976332, 0.07100591715976332, 0.07100591715976332, 0.07100591715976332, 0.07100591715976332, 0.07100591715976332, 0.06903353057199212, 0.07100591715976332, 0.07297830374753451, 0.09861932938856016, 0.10650887573964497, 0.08284023668639054, 0.08086785009861933, 0.07889546351084813, 0.08284023668639054, 0.07889546351084813, 0.07889546351084813, 0.07100591715976332, 0.0631163708086785, 0.0670611439842209, 0.0650887573964497, 0.2445759368836292, 0.23274161735700197, 0.2859960552268245, 0.8994082840236687, 0.9467455621301775, 0.8717948717948718, 0.1341222879684418, 0.08481262327416174, 0.07692307692307693, 0.07297830374753451, 0.07100591715976332, 0.0670611439842209, 0.07692307692307693, 0.06903353057199212, 0.07100591715976332, 0.0631163708086785, 0.055226824457593686, 0.055226824457593686, 0.05719921104536489, 0.10059171597633136, 0.07889546351084813, 0.05917159763313609, 0.04142011834319527, 0.03353057199211045, 0.03353057199211045, 0.029585798816568046, 0.027613412228796843, 0.027613412228796843, 0.02564102564102564, 0.02564102564102564, 0.02564102564102564, 0.02564102564102564, 0.027613412228796843, 0.1242603550295858, 0.9428007889546351, 0.9487179487179487, 0.9487179487179487, 0.9447731755424064, 0.8047337278106509, 0.027613412228796843, 0.02564102564102564, 0.023668639053254437, 0.021696252465483234, 0.01972386587771203, 0.01972386587771203, 0.01972386587771203, 0.009861932938856016, 0.009861932938856016, 0.009861932938856016, 0.009861932938856016, 0.009861932938856016, 0.009861932938856016, 0.011834319526627219, 0.013806706114398421, 0.015779092702169626, 0.015779092702169626, 0.013806706114398421, 0.013806706114398421, 0.013806706114398421, 0.013806706114398421, 0.013806706114398421, 0.013806706114398421, 0.013806706114398421, 0.013806706114398421, 0.013806706114398421, 0.013806706114398421, 0.013806706114398421, 0.013806706114398421, 0.013806706114398421, 0.013806706114398421, 0.015779092702169626, 0.015779092702169626, 0.015779092702169626, 0.015779092702169626, 0.015779092702169626, 0.015779092702169626, 0.8402366863905325, 0.04142011834319527, 0.01972386587771203, 0.01775147928994083, 0.023668639053254437, 0.03155818540433925, 0.03550295857988166, 0.03747534516765286, 0.03944773175542406, 0.03550295857988166, 0.029585798816568046, 0.04142011834319527, 0.0611439842209073, 0.07297830374753451, 0.09270216962524655, 0.1203155818540434, 0.17159763313609466, 0.2465483234714004, 0.4437869822485207, 0.611439842209073, 0.757396449704142], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/Zn_ribbon_17.gap.json b/pfam_gap_rates/Zn_ribbon_17.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..7cad38ae1c5c12bebbd09d04513652d36f359729
--- /dev/null
+++ b/pfam_gap_rates/Zn_ribbon_17.gap.json
@@ -0,0 +1 @@
+{"family": "Zn_ribbon_17", "n_seqs": 236, "length": 59, "gap_rates": [0.9194915254237288, 0.7203389830508474, 0.5211864406779662, 0.25, 0.059322033898305086, 0.038135593220338986, 0.038135593220338986, 0.038135593220338986, 0.03389830508474576, 0.025423728813559324, 0.025423728813559324, 0.01694915254237288, 0.012711864406779662, 0.012711864406779662, 0.012711864406779662, 0.00847457627118644, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.025423728813559324, 0.025423728813559324, 0.029661016949152543, 0.038135593220338986, 0.012711864406779662, 0.029661016949152543, 0.029661016949152543, 0.038135593220338986, 0.05084745762711865, 0.9364406779661016, 0.9194915254237288, 0.7457627118644068, 0.6313559322033898, 0.059322033898305086, 0.05508474576271186, 0.059322033898305086, 0.06779661016949153, 0.9364406779661016, 0.07627118644067797, 0.06779661016949153, 0.1228813559322034, 0.1271186440677966, 0.13559322033898305, 0.1483050847457627, 0.18220338983050846, 0.4491525423728814, 0.6483050847457628, 0.8813559322033898], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/bZIP_2.gap.json b/pfam_gap_rates/bZIP_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..818215192ee7674db7339e9f6f1328a751383e61
--- /dev/null
+++ b/pfam_gap_rates/bZIP_2.gap.json
@@ -0,0 +1 @@
+{"family": "bZIP_2", "n_seqs": 1739, "length": 55, "gap_rates": [0.8050603795284647, 0.5537665324899368, 0.39850488786659, 0.27717078780908566, 0.21334100057504313, 0.1604370327774583, 0.09488211615871191, 0.05980448533640023, 0.04370327774583094, 0.029902242668200116, 0.7498562392179413, 0.03737780333525014, 0.03680276020701553, 0.013801035077630822, 0.010925819436457734, 0.010350776308223116, 0.008625646923519264, 0.008050603795284647, 0.0063254744105807935, 0.0063254744105807935, 0.005175388154111558, 0.0040253018976423235, 0.0040253018976423235, 0.0034502587694077054, 0.002875215641173088, 0.002875215641173088, 0.004600345025876941, 0.0063254744105807935, 0.0063254744105807935, 0.006900517538815411, 0.007475560667050029, 0.008050603795284647, 0.008050603795284647, 0.008625646923519264, 0.0097757331799885, 0.010350776308223116, 0.01437607820586544, 0.016101207590569294, 0.019551466359977, 0.022426682001150087, 0.03335250143760782, 0.053479010925819435, 0.058654399079930995, 0.06670500287521564, 0.07360552041403105, 0.078205865439908, 0.09085681426106958, 0.12190914318573894, 0.13571017826336976, 0.1633122484186314, 0.2024151811385854, 0.23231742380678552, 0.28637147786083955, 0.425531914893617, 0.5416906267970097], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/eIF-3_zeta.gap.json b/pfam_gap_rates/eIF-3_zeta.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..3dbff869d669392a54c9024dfa5cf99480c0881e
--- /dev/null
+++ b/pfam_gap_rates/eIF-3_zeta.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/fn1.gap.json b/pfam_gap_rates/fn1.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..5321da02b6b3dd282744c7be94146a489302203b
--- /dev/null
+++ b/pfam_gap_rates/fn1.gap.json
@@ -0,0 +1 @@
+{"family": "fn1", "n_seqs": 249, "length": 41, "gap_rates": [0.08835341365461848, 0.08835341365461848, 0.08032128514056225, 0.05622489959839357, 0.39759036144578314, 0.42971887550200805, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.028112449799196786, 0.04819277108433735, 0.4819277108433735, 0.008032128514056224, 0.7831325301204819, 0.0321285140562249, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.004016064257028112, 0.008032128514056224, 0.1686746987951807, 0.1606425702811245, 0.1606425702811245, 0.0642570281124498, 0.20080321285140562, 0.0642570281124498, 0.0642570281124498, 0.06827309236947791], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/hGDE_N.gap.json b/pfam_gap_rates/hGDE_N.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..91e35dfd0e3c5386ff3ba14ac2d3af9f1be52fd8
--- /dev/null
+++ b/pfam_gap_rates/hGDE_N.gap.json
@@ -0,0 +1 @@
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diff --git a/pfam_gap_rates/muHD.gap.json b/pfam_gap_rates/muHD.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..60b1749ee77c2e281216384c568a26507375c9c1
--- /dev/null
+++ b/pfam_gap_rates/muHD.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/ssDNA-exonuc_C.gap.json b/pfam_gap_rates/ssDNA-exonuc_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..58fff649f621f0c1ba6e9900af6118a277f5ce17
--- /dev/null
+++ b/pfam_gap_rates/ssDNA-exonuc_C.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/tRNA-synt_1c_C.gap.json b/pfam_gap_rates/tRNA-synt_1c_C.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..7bb90b7aee1cf2b3f5ecaa22e1ddabe29c04871b
--- /dev/null
+++ b/pfam_gap_rates/tRNA-synt_1c_C.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/tRNA-synt_2e.gap.json b/pfam_gap_rates/tRNA-synt_2e.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..528e3259273ac732b59d257f7a46ffc5495895a6
--- /dev/null
+++ b/pfam_gap_rates/tRNA-synt_2e.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/tRNA_NucTran2_2.gap.json b/pfam_gap_rates/tRNA_NucTran2_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..194995f477284aa36784f0437b68a70b762a4fcc
--- /dev/null
+++ b/pfam_gap_rates/tRNA_NucTran2_2.gap.json
@@ -0,0 +1 @@
+{"family": "tRNA_NucTran2_2", "n_seqs": 768, "length": 193, "gap_rates": [0.9244791666666666, 0.8723958333333334, 0.8307291666666666, 0.796875, 0.7669270833333334, 0.7408854166666666, 0.7174479166666666, 0.6927083333333334, 0.6822916666666666, 0.6614583333333334, 0.64453125, 0.6354166666666666, 0.6263020833333334, 0.62109375, 0.6080729166666666, 0.6015625, 0.58203125, 0.64453125, 0.6041666666666666, 0.4856770833333333, 0.3815104166666667, 0.3151041666666667, 0.21354166666666666, 0.17578125, 0.16145833333333334, 0.14583333333333334, 0.140625, 0.13020833333333334, 0.11067708333333333, 0.10677083333333333, 0.10546875, 0.10286458333333333, 0.10026041666666667, 0.09895833333333333, 0.09895833333333333, 0.09895833333333333, 0.09635416666666667, 0.09635416666666667, 0.09765625, 0.09635416666666667, 0.09635416666666667, 0.09375, 0.09375, 0.09244791666666667, 0.09114583333333333, 0.09244791666666667, 0.09114583333333333, 0.09114583333333333, 0.1015625, 0.10677083333333333, 0.125, 0.6497395833333334, 0.84375, 0.9322916666666666, 0.890625, 0.77734375, 0.5859375, 0.15625, 0.14453125, 0.10546875, 0.1015625, 0.09765625, 0.09635416666666667, 0.10026041666666667, 0.8567708333333334, 0.9348958333333334, 0.9140625, 0.8307291666666666, 0.09375, 0.07942708333333333, 0.8424479166666666, 0.8658854166666666, 0.84765625, 0.8255208333333334, 0.07942708333333333, 0.07682291666666667, 0.07682291666666667, 0.07552083333333333, 0.078125, 0.07942708333333333, 0.9231770833333334, 0.9088541666666666, 0.08203125, 0.07682291666666667, 0.07552083333333333, 0.078125, 0.078125, 0.078125, 0.07421875, 0.07291666666666667, 0.8984375, 0.9296875, 0.8567708333333334, 0.07421875, 0.09635416666666667, 0.10026041666666667, 0.11197916666666667, 0.11588541666666667, 0.11588541666666667, 0.11458333333333333, 0.4479166666666667, 0.546875, 0.6106770833333334, 0.6848958333333334, 0.7486979166666666, 0.8697916666666666, 0.9440104166666666, 0.9140625, 0.8111979166666666, 0.734375, 0.6380208333333334, 0.58984375, 0.4973958333333333, 0.3658854166666667, 0.09375, 0.09765625, 0.09244791666666667, 0.07942708333333333, 0.0703125, 0.06770833333333333, 0.0703125, 0.06640625, 0.057291666666666664, 0.05859375, 0.8880208333333334, 0.8346354166666666, 0.06770833333333333, 0.0703125, 0.0703125, 0.07682291666666667, 0.08072916666666667, 0.0859375, 0.7200520833333334, 0.7447916666666666, 0.8489583333333334, 0.9114583333333334, 0.9453125, 0.9205729166666666, 0.8763020833333334, 0.8359375, 0.7395833333333334, 0.7135416666666666, 0.033854166666666664, 0.026041666666666668, 0.018229166666666668, 0.01953125, 0.013020833333333334, 0.13541666666666666, 0.0013020833333333333, 0.0, 0.0, 0.0, 0.0, 0.0, 0.005208333333333333, 0.0, 0.0, 0.375, 0.028645833333333332, 0.0078125, 0.028645833333333332, 0.0013020833333333333, 0.0026041666666666665, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0013020833333333333, 0.0013020833333333333, 0.0013020833333333333, 0.0026041666666666665, 0.0013020833333333333, 0.0026041666666666665, 0.00390625, 0.00390625, 0.006510416666666667, 0.0078125, 0.010416666666666666, 0.009114583333333334, 0.009114583333333334, 0.01171875, 0.015625, 0.016927083333333332, 0.01953125, 0.040364583333333336, 0.16536458333333334, 0.2265625, 0.4700520833333333, 0.7994791666666666], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/tRNA_anti-codon.gap.json b/pfam_gap_rates/tRNA_anti-codon.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ab7fcb429e8086776c9794139c7a30a5c7ac4ace
--- /dev/null
+++ b/pfam_gap_rates/tRNA_anti-codon.gap.json
@@ -0,0 +1 @@
+{"family": "tRNA_anti-codon", "n_seqs": 5000, "length": 111, "gap_rates": [0.327, 0.1478, 0.0744, 0.06, 0.0508, 0.0442, 0.0328, 0.0312, 0.0304, 0.0276, 0.6692, 0.819, 0.9276, 0.9482, 0.9494, 0.9458, 0.829, 0.7914, 0.7586, 0.0048, 0.004, 0.004, 0.024, 0.0234, 0.0222, 0.0118, 0.001, 0.0004, 0.0002, 0.0002, 0.0, 0.0, 0.0, 0.0, 0.8924, 0.8616, 0.0004, 0.0002, 0.0004, 0.0004, 0.0004, 0.0006, 0.0008, 0.0008, 0.0006, 0.4568, 0.6566, 0.9026, 0.9358, 0.8286, 0.553, 0.356, 0.1242, 0.0602, 0.0534, 0.0306, 0.014, 0.0084, 0.002, 0.0016, 0.0016, 0.0016, 0.0012, 0.0012, 0.0012, 0.0012, 0.0012, 0.0012, 0.0012, 0.0012, 0.0014, 0.946, 0.002, 0.0022, 0.0032, 0.0034, 0.0046, 0.0062, 0.7738, 0.8754, 0.8898, 0.9418, 0.9478, 0.9064, 0.8844, 0.814, 0.759, 0.0132, 0.033, 0.0254, 0.6852, 0.774, 0.7904, 0.856, 0.8648, 0.8278, 0.778, 0.7658, 0.679, 0.283, 0.038, 0.039, 0.042, 0.052, 0.0682, 0.0906, 0.1138, 0.146, 0.228, 0.3476, 0.5746], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/tRNA_lig_kinase.gap.json b/pfam_gap_rates/tRNA_lig_kinase.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..12054d0849ca22a383d48f9b68dfb2bd89dd7f76
--- /dev/null
+++ b/pfam_gap_rates/tRNA_lig_kinase.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/tRNA_synt_2f.gap.json b/pfam_gap_rates/tRNA_synt_2f.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..83f222c22ca8393cb71e6f953e6203d273604387
--- /dev/null
+++ b/pfam_gap_rates/tRNA_synt_2f.gap.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/pfam_gap_rates/vATP-synt_E.gap.json b/pfam_gap_rates/vATP-synt_E.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..c600f32c749f63636fad3593a18931a3e9bb7034
--- /dev/null
+++ b/pfam_gap_rates/vATP-synt_E.gap.json
@@ -0,0 +1 @@
+{"family": "vATP-synt_E", "n_seqs": 794, "length": 211, "gap_rates": [0.38413098236775817, 0.21788413098236775, 0.190176322418136, 0.1624685138539043, 0.1473551637279597, 0.13602015113350127, 0.1309823677581864, 0.12720403022670027, 0.12342569269521411, 0.11964735516372796, 0.11335012594458438, 0.10453400503778337, 0.10453400503778337, 0.10579345088161209, 0.09949622166246852, 0.09697732997481108, 0.09193954659949623, 0.08816120906801007, 0.08438287153652393, 0.08060453400503778, 0.07556675062972293, 0.07304785894206549, 0.07178841309823678, 0.07178841309823678, 0.06926952141057935, 0.0654911838790932, 0.06423173803526448, 0.06423173803526448, 0.06675062972292191, 0.06675062972292191, 0.07052896725440806, 0.06926952141057935, 0.06675062972292191, 0.06801007556675064, 0.0654911838790932, 0.06423173803526448, 0.06423173803526448, 0.06297229219143577, 0.061712846347607056, 0.06297229219143577, 0.06801007556675064, 0.06801007556675064, 0.06801007556675064, 0.06675062972292191, 0.061712846347607056, 0.061712846347607056, 0.060453400503778336, 0.060453400503778336, 0.061712846347607056, 0.05919395465994962, 0.05793450881612091, 0.05793450881612091, 0.05919395465994962, 0.061712846347607056, 0.06297229219143577, 0.06423173803526448, 0.06297229219143577, 0.05793450881612091, 0.05793450881612091, 0.05667506297229219, 0.05793450881612091, 0.05919395465994962, 0.060453400503778336, 0.05793450881612091, 0.05793450881612091, 0.05793450881612091, 0.060453400503778336, 0.06675062972292191, 0.06423173803526448, 0.05163727959697733, 0.05163727959697733, 0.05163727959697733, 0.05163727959697733, 0.05163727959697733, 0.05163727959697733, 0.05415617128463476, 0.05415617128463476, 0.055415617128463476, 0.05415617128463476, 0.05415617128463476, 0.05415617128463476, 0.05667506297229219, 0.05667506297229219, 0.05793450881612091, 0.05415617128463476, 0.05415617128463476, 0.05793450881612091, 0.06297229219143577, 0.05919395465994962, 0.05793450881612091, 0.060453400503778336, 0.06423173803526448, 0.464735516372796, 0.29848866498740556, 0.11083123425692695, 0.10831234256926953, 0.09949622166246852, 0.0982367758186398, 0.06801007556675064, 0.07178841309823678, 0.06801007556675064, 0.07052896725440806, 0.07682619647355164, 0.08060453400503778, 0.0818639798488665, 0.08690176322418136, 0.10831234256926953, 0.11964735516372796, 0.12090680100755667, 0.1397984886649874, 0.12846347607052896, 0.9319899244332494, 0.10957178841309824, 0.10579345088161209, 0.12216624685138538, 0.12846347607052896, 0.10957178841309824, 0.0982367758186398, 0.11586901763224182, 0.11209068010075567, 0.10579345088161209, 0.0982367758186398, 0.10201511335012595, 0.10201511335012595, 0.10075566750629723, 0.10327455919395466, 0.09445843828715365, 0.09697732997481108, 0.09445843828715365, 0.09445843828715365, 0.2141057934508816, 0.29093198992443325, 0.2783375314861461, 0.2594458438287154, 0.18639798488664988, 0.1473551637279597, 0.14609571788413098, 0.1385390428211587, 0.12342569269521411, 0.12342569269521411, 0.12846347607052896, 0.20151133501259447, 0.2770780856423174, 0.25440806045340053, 0.2506297229219144, 0.21914357682619648, 0.5277078085642317, 0.20906801007556675, 0.16498740554156172, 0.15239294710327456, 0.14357682619647355, 0.13727959697732997, 0.13602015113350127, 0.15113350125944586, 0.5516372795969773, 0.4836272040302267, 0.4508816120906801, 0.4105793450881612, 0.7997481108312342, 0.8236775818639799, 0.8324937027707808, 0.8387909319899244, 0.8564231738035264, 0.8954659949622166, 0.8400503778337531, 0.8337531486146096, 0.8261964735516373, 0.8173803526448362, 0.6221662468513854, 0.1964735516372796, 0.15239294710327456, 0.1385390428211587, 0.13476070528967254, 0.1385390428211587, 0.12594458438287154, 0.12594458438287154, 0.12594458438287154, 0.12594458438287154, 0.1309823677581864, 0.20277078085642317, 0.2367758186397985, 0.190176322418136, 0.16498740554156172, 0.14483627204030228, 0.1385390428211587, 0.13727959697732997, 0.13476070528967254, 0.13602015113350127, 0.13602015113350127, 0.13476070528967254, 0.13602015113350127, 0.1385390428211587, 0.1397984886649874, 0.1397984886649874, 0.14105793450881612, 0.14231738035264482, 0.15491183879093198, 0.17002518891687657, 0.17758186397984888, 0.18261964735516373, 0.1889168765743073, 0.1964735516372796, 0.2040302267002519, 0.2040302267002519, 0.20780856423173805, 0.22418136020151133, 0.23929471032745592, 0.24937027707808565, 0.2619647355163728, 0.26322418136020154, 0.3224181360201511], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/zf-A20.gap.json b/pfam_gap_rates/zf-A20.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..77397faf35bfea67b117e8547de16027faa1fcda
--- /dev/null
+++ b/pfam_gap_rates/zf-A20.gap.json
@@ -0,0 +1 @@
+{"family": "zf-A20", "n_seqs": 644, "length": 25, "gap_rates": [0.4503105590062112, 0.09161490683229814, 0.029503105590062112, 0.026397515527950312, 0.026397515527950312, 0.013975155279503106, 0.8105590062111802, 0.009316770186335404, 0.009316770186335404, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0015527950310559005, 0.0015527950310559005, 0.0015527950310559005, 0.0015527950310559005, 0.003105590062111801, 0.006211180124223602, 0.021739130434782608, 0.17236024844720496], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/zf-BED.gap.json b/pfam_gap_rates/zf-BED.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..e826033c97e57c6868fa9368399e56f1602e7e56
--- /dev/null
+++ b/pfam_gap_rates/zf-BED.gap.json
@@ -0,0 +1 @@
+{"family": "zf-BED", "n_seqs": 1193, "length": 56, "gap_rates": [0.4853310980720872, 0.2967309304274937, 0.1584241408214585, 0.10310142497904443, 0.09304274937133278, 0.08214585079631181, 0.07963118189438391, 0.07627829002514669, 0.07544006705783739, 0.07376362112321877, 0.06621961441743504, 0.6948868398994132, 0.8709136630343671, 0.9186923721709975, 0.9002514668901928, 0.8164291701592624, 0.5431684828164292, 0.30176026823134955, 0.20201173512154233, 0.05113160100586756, 0.010058675607711651, 0.005029337803855826, 0.003352891869237217, 0.0008382229673093043, 0.0, 0.0, 0.0, 0.0, 0.0, 0.004191114836546521, 0.004191114836546521, 0.0008382229673093043, 0.0008382229673093043, 0.0008382229673093043, 0.15255658005029338, 0.6303436714165969, 0.8432523051131601, 0.8725901089689857, 0.8046940486169321, 0.5264040234702431, 0.3403185247275775, 0.030176026823134954, 0.015088013411567477, 0.0075440067057837385, 0.008382229673093043, 0.008382229673093043, 0.010896898575020955, 0.013411567476948869, 0.013411567476948869, 0.06957250628667226, 0.9463537300922046, 0.2154233025984912, 0.23973176865046103, 0.32187761944677284, 0.4056999161777033, 0.6010058675607711], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/zf-C2H2_11.gap.json b/pfam_gap_rates/zf-C2H2_11.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..26f88e217b6d96faf15cb6f4c54377ce3cfc81dc
--- /dev/null
+++ b/pfam_gap_rates/zf-C2H2_11.gap.json
@@ -0,0 +1 @@
+{"family": "zf-C2H2_11", "n_seqs": 398, "length": 29, "gap_rates": [0.8065326633165829, 0.7713567839195979, 0.7135678391959799, 0.6256281407035176, 0.14824120603015076, 0.09798994974874371, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.002512562814070352, 0.002512562814070352, 0.0829145728643216, 0.20351758793969849, 0.2613065326633166, 0.6658291457286433, 0.6658291457286433, 0.7814070351758794], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/zf-C3HC4.gap.json b/pfam_gap_rates/zf-C3HC4.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..6a3f512017e10e3ee6995b9351428c5497c0376c
--- /dev/null
+++ b/pfam_gap_rates/zf-C3HC4.gap.json
@@ -0,0 +1 @@
+{"family": "zf-C3HC4", "n_seqs": 2741, "length": 62, "gap_rates": [0.04450930317402408, 0.04377964246625319, 0.04013133892739876, 0.03611820503465888, 0.03611820503465888, 0.03465888361911711, 0.03356439255746078, 0.03246990149580445, 0.02991608901860635, 0.026267785479751914, 0.024443633710324698, 0.023713973002553814, 0.7905873768697556, 0.8759576796789493, 0.8927398759576797, 0.9047792776358993, 0.9463699379788398, 0.8949288580809923, 0.8861729295877417, 0.8540678584458227, 0.7442539219263042, 0.534111638088289, 0.008391098139365194, 0.004377964246625319, 0.0007296607077708865, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0007296607077708865, 0.0018241517694272164, 0.0018241517694272164, 0.0018241517694272164, 0.002553812477198103, 0.0036483035388544327, 0.006931776723823422, 0.010580080262677856, 0.017511856986501276, 0.254286756658154, 0.5023713973002554, 0.6858810653046333, 0.8259759211966435, 0.8931047063115651, 0.9354250273622765, 0.9485589201021525, 0.9113462240058373, 0.8515140459686246, 0.756293323604524, 0.5771616198467713, 0.4359722728931047, 0.14118934695366656, 0.1054359722728931, 0.10726012404232033, 0.11090842758117475, 0.1003283473184969, 0.9139000364830354, 0.09740970448741336, 0.10397665085735133, 0.19700839109813936, 0.2116016052535571], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/zf-C5HC2.gap.json b/pfam_gap_rates/zf-C5HC2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..1c639c947e8b7a2f70de7e5382a62ff0b85cbf20
--- /dev/null
+++ b/pfam_gap_rates/zf-C5HC2.gap.json
@@ -0,0 +1 @@
+{"family": "zf-C5HC2", "n_seqs": 495, "length": 64, "gap_rates": [0.020202020202020204, 0.01818181818181818, 0.01616161616161616, 0.01616161616161616, 0.01616161616161616, 0.01616161616161616, 0.01616161616161616, 0.01616161616161616, 0.01616161616161616, 0.01616161616161616, 0.01616161616161616, 0.01818181818181818, 0.01818181818181818, 0.01818181818181818, 0.01616161616161616, 0.01616161616161616, 0.3434343434343434, 0.014141414141414142, 0.7616161616161616, 0.4303030303030303, 0.012121212121212121, 0.012121212121212121, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.8686868686868687, 0.8545454545454545, 0.03232323232323232, 0.00202020202020202, 0.0, 0.012121212121212121, 0.006060606060606061, 0.13333333333333333, 0.604040404040404, 0.014141414141414142, 0.00808080808080808, 0.006060606060606061, 0.9313131313131313, 0.010101010101010102, 0.00808080808080808, 0.010101010101010102, 0.00808080808080808, 0.8787878787878788, 0.8808080808080808, 0.8808080808080808, 0.8808080808080808, 0.8808080808080808, 0.8727272727272727, 0.006060606060606061, 0.006060606060606061, 0.00808080808080808, 0.010101010101010102, 0.012121212121212121, 0.014141414141414142, 0.01616161616161616, 0.01818181818181818, 0.022222222222222223, 0.026262626262626262, 0.08080808080808081, 0.3191919191919192, 0.5898989898989899], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/zf-CCHC_2.gap.json b/pfam_gap_rates/zf-CCHC_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..f357042eaea1be053614c7364d4d6b956449310d
--- /dev/null
+++ b/pfam_gap_rates/zf-CCHC_2.gap.json
@@ -0,0 +1 @@
+{"family": "zf-CCHC_2", "n_seqs": 529, "length": 21, "gap_rates": [0.15500945179584122, 0.05103969754253308, 0.01890359168241966, 0.011342155009451797, 0.003780718336483932, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.054820415879017016, 0.21550094517958412], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/zf-HC2.gap.json b/pfam_gap_rates/zf-HC2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..ea34be291d92373f296a3b398c7f7eb7cd50f6ec
--- /dev/null
+++ b/pfam_gap_rates/zf-HC2.gap.json
@@ -0,0 +1 @@
+{"family": "zf-HC2", "n_seqs": 1709, "length": 35, "gap_rates": [0.4142773551784669, 0.38736102984201287, 0.34523112931538913, 0.30895260386190754, 0.2767700409596255, 0.18256290228203628, 0.14745465184318315, 0.09362200117027501, 0.06612053832650673, 0.01930953774136922, 0.008777062609713282, 0.007021650087770626, 0.003510825043885313, 0.0011702750146284377, 0.0005851375073142189, 0.0005851375073142189, 0.0005851375073142189, 0.0, 0.0, 0.0, 0.0, 0.0011702750146284377, 0.0011702750146284377, 0.0, 0.0, 0.0076067875950848445, 0.016383850204798128, 0.016383850204798128, 0.016968987712112346, 0.02633118782913985, 0.028671737858396724, 0.03159742539496782, 0.037448800468110006, 0.03978935049736688, 0.4072557050906963], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/zf-HC5HC2H.gap.json b/pfam_gap_rates/zf-HC5HC2H.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..b138a693ca13c34a5a5560b300a2404441bc694e
--- /dev/null
+++ b/pfam_gap_rates/zf-HC5HC2H.gap.json
@@ -0,0 +1 @@
+{"family": "zf-HC5HC2H", "n_seqs": 660, "length": 108, "gap_rates": [0.14545454545454545, 0.14393939393939395, 0.1409090909090909, 0.13787878787878788, 0.13636363636363635, 0.1318181818181818, 0.12727272727272726, 0.12575757575757576, 0.12575757575757576, 0.12424242424242424, 0.12272727272727273, 0.11969696969696969, 0.12121212121212122, 0.11969696969696969, 0.11666666666666667, 0.1606060606060606, 0.2318181818181818, 0.5303030303030303, 0.7560606060606061, 0.9363636363636364, 0.8909090909090909, 0.746969696969697, 0.7121212121212122, 0.6636363636363637, 0.5742424242424242, 0.5075757575757576, 0.20757575757575758, 0.09696969696969697, 0.06818181818181818, 0.05454545454545454, 0.04696969696969697, 0.045454545454545456, 0.04090909090909091, 0.03333333333333333, 0.030303030303030304, 0.02727272727272727, 0.024242424242424242, 0.019696969696969695, 0.016666666666666666, 0.013636363636363636, 0.007575757575757576, 0.004545454545454545, 0.0015151515151515152, 0.0015151515151515152, 0.0015151515151515152, 0.0015151515151515152, 0.0015151515151515152, 0.0015151515151515152, 0.0015151515151515152, 0.9409090909090909, 0.943939393939394, 0.943939393939394, 0.9151515151515152, 0.7560606060606061, 0.0015151515151515152, 0.0015151515151515152, 0.0015151515151515152, 0.0015151515151515152, 0.0015151515151515152, 0.0, 0.0, 0.0, 0.019696969696969695, 0.015151515151515152, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0030303030303030303, 0.02878787878787879, 0.05606060606060606, 0.06818181818181818, 0.06515151515151515, 0.05606060606060606, 0.06060606060606061, 0.06515151515151515, 0.0893939393939394, 0.1318181818181818, 0.8757575757575757, 0.9272727272727272, 0.9045454545454545, 0.8651515151515151, 0.6818181818181818, 0.6848484848484848, 0.6515151515151515, 0.4621212121212121, 0.9181818181818182, 0.9333333333333333, 0.946969696969697, 0.9378787878787879, 0.9257575757575758, 0.9166666666666666, 0.24848484848484848, 0.10303030303030303, 0.09242424242424242, 0.09242424242424242, 0.09393939393939393, 0.09393939393939393, 0.09545454545454546, 0.09696969696969697, 0.10909090909090909, 0.5590909090909091], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/zf-HC5HC2H_2.gap.json b/pfam_gap_rates/zf-HC5HC2H_2.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..6466807d79e0a03ab50f12dec5b8cac88686d13a
--- /dev/null
+++ b/pfam_gap_rates/zf-HC5HC2H_2.gap.json
@@ -0,0 +1 @@
+{"family": "zf-HC5HC2H_2", "n_seqs": 1331, "length": 128, "gap_rates": [0.24492862509391436, 0.169045830202855, 0.169045830202855, 0.1615326821938392, 0.16078136739293764, 0.16003005259203607, 0.1592787377911345, 0.1562734785875282, 0.16078136739293764, 0.13298271975957926, 0.11645379413974455, 0.07137490608564989, 0.06611570247933884, 0.06235912847483095, 0.05785123966942149, 0.051840721262208865, 0.9481592787377912, 0.8136739293764087, 0.037565740045078885, 0.9489105935386927, 0.03305785123966942, 0.024793388429752067, 0.021036814425244178, 0.021036814425244178, 0.021036814425244178, 0.021036814425244178, 0.019534184823441023, 0.019534184823441023, 0.019534184823441023, 0.019534184823441023, 0.019534184823441023, 0.019534184823441023, 0.019534184823441023, 0.021788129226145755, 0.022539444027047332, 0.02629601803155522, 0.04132231404958678, 0.04432757325319309, 0.048835462058602556, 0.05033809166040571, 0.03831705484598046, 0.03906836964688205, 0.09616829451540196, 0.0743801652892562, 0.06235912847483095, 0.04583020285499624, 0.03831705484598046, 0.4229902329075883, 0.03906836964688205, 0.03155522163786627, 0.030803906836964687, 0.030803906836964687, 0.03305785123966942, 0.03305785123966942, 0.037565740045078885, 0.09616829451540196, 0.0879038317054846, 0.042073628850488355, 0.0405709992486852, 0.039819684447783624, 0.042073628850488355, 0.042073628850488355, 0.04357625845229151, 0.04357625845229151, 0.04357625845229151, 0.04357625845229151, 0.10593538692712247, 0.8369646882043577, 0.845229151014275, 0.9346356123215628, 0.9398948159278738, 0.9331329827197595, 0.8422238918106687, 0.7167543200601052, 0.06235912847483095, 0.04658151765589782, 0.05108940646130729, 0.05033809166040571, 0.04808414725770098, 0.0473328324567994, 0.04808414725770098, 0.049586776859504134, 0.05033809166040571, 0.1960931630353118, 0.19158527422990232, 0.05785123966942149, 0.059353869271224644, 0.059353869271224644, 0.061607813673929375, 0.061607813673929375, 0.061607813673929375, 0.061607813673929375, 0.06235912847483095, 0.06536438767843726, 0.06536438767843726, 0.06611570247933884, 0.06686701728024042, 0.0781367392937641, 0.08564988730277986, 0.10293012772351616, 0.10818933132982719, 0.11720510894064613, 0.135236664162284, 0.14951164537941397, 0.1728024042073629, 0.20811419984973703, 0.2531930879038317, 0.2870022539444027, 0.41697971450037563, 0.6416228399699474, 0.7220135236664162, 0.8287002253944402, 0.8940646130728775, 0.8564988730277987, 0.8076634109691961, 0.6994740796393689, 0.5477084898572502, 0.42674680691209615, 0.38918106686701726, 0.38317054845980464, 0.3794139744552968, 0.3816679188580015, 0.38317054845980464, 0.38317054845980464, 0.38317054845980464, 0.3899323816679189, 0.3981968444778362, 0.41021788129226144], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/zf-HYPF.gap.json b/pfam_gap_rates/zf-HYPF.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..6768d216b0d842b55abb618d42ca8f636ce2dae5
--- /dev/null
+++ b/pfam_gap_rates/zf-HYPF.gap.json
@@ -0,0 +1 @@
+{"family": "zf-HYPF", "n_seqs": 1057, "length": 34, "gap_rates": [0.0586565752128666, 0.006622516556291391, 0.006622516556291391, 0.002838221381267739, 0.001892147587511826, 0.001892147587511826, 0.001892147587511826, 0.001892147587511826, 0.000946073793755913, 0.000946073793755913, 0.000946073793755913, 0.002838221381267739, 0.002838221381267739, 0.01608325449385052, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.002838221381267739, 0.007568590350047304, 0.010406811731315043, 0.013245033112582781, 0.03500473036896878, 0.08987701040681173, 0.4853358561967833], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/zf-LYAR.gap.json b/pfam_gap_rates/zf-LYAR.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..0bb99d276c669ebd560ebd2c8d4d6ad7df43ee2f
--- /dev/null
+++ b/pfam_gap_rates/zf-LYAR.gap.json
@@ -0,0 +1 @@
+{"family": "zf-LYAR", "n_seqs": 266, "length": 29, "gap_rates": [0.09022556390977443, 0.06390977443609022, 0.06390977443609022, 0.06015037593984962, 0.05639097744360902, 0.05639097744360902, 0.05639097744360902, 0.02631578947368421, 0.018796992481203006, 0.018796992481203006, 0.011278195488721804, 0.011278195488721804, 0.8834586466165414, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.015037593984962405, 0.018796992481203006, 0.018796992481203006, 0.018796992481203006, 0.018796992481203006, 0.018796992481203006, 0.018796992481203006, 0.018796992481203006, 0.045112781954887216], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/zf-PARP.gap.json b/pfam_gap_rates/zf-PARP.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..eeb8703049ea78ac5268c0438d0adea4fb81602e
--- /dev/null
+++ b/pfam_gap_rates/zf-PARP.gap.json
@@ -0,0 +1 @@
+{"family": "zf-PARP", "n_seqs": 604, "length": 98, "gap_rates": [0.20695364238410596, 0.10430463576158941, 0.06291390728476821, 0.056291390728476824, 0.05132450331125828, 0.07119205298013245, 0.048013245033112585, 0.04304635761589404, 0.0347682119205298, 0.0347682119205298, 0.0347682119205298, 0.03145695364238411, 0.7731788079470199, 0.9089403973509934, 0.7665562913907285, 0.03145695364238411, 0.03145695364238411, 0.8841059602649006, 0.890728476821192, 0.7947019867549668, 0.03145695364238411, 0.033112582781456956, 0.03145695364238411, 0.029801324503311258, 0.028145695364238412, 0.024834437086092714, 0.023178807947019868, 0.019867549668874173, 0.019867549668874173, 0.019867549668874173, 0.019867549668874173, 0.019867549668874173, 0.026490066225165563, 0.14403973509933773, 0.07119205298013245, 0.08774834437086093, 0.15397350993377484, 0.152317880794702, 0.06622516556291391, 0.43874172185430466, 0.7367549668874173, 0.9105960264900662, 0.8410596026490066, 0.6490066225165563, 0.3609271523178808, 0.048013245033112585, 0.048013245033112585, 0.018211920529801324, 0.014900662251655629, 0.014900662251655629, 0.013245033112582781, 0.013245033112582781, 0.013245033112582781, 0.013245033112582781, 0.016556291390728478, 0.019867549668874173, 0.023178807947019868, 0.029801324503311258, 0.039735099337748346, 0.04966887417218543, 0.1804635761589404, 0.17052980132450332, 0.152317880794702, 0.15066225165562913, 0.1490066225165563, 0.15728476821192053, 0.22682119205298013, 0.42549668874172186, 0.6672185430463576, 0.6870860927152318, 0.5778145695364238, 0.5215231788079471, 0.43874172185430466, 0.8923841059602649, 0.9288079470198676, 0.8990066225165563, 0.859271523178808, 0.271523178807947, 0.17549668874172186, 0.09105960264900662, 0.09105960264900662, 0.09105960264900662, 0.09105960264900662, 0.09271523178807947, 0.09602649006622517, 0.09768211920529801, 0.09933774834437085, 0.10264900662251655, 0.10430463576158941, 0.1076158940397351, 0.11258278145695365, 0.11423841059602649, 0.11423841059602649, 0.12251655629139073, 0.14403973509933773, 0.19205298013245034, 0.34602649006622516, 0.7135761589403974], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/zf-RING_11.gap.json b/pfam_gap_rates/zf-RING_11.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d970351a12d25d0d20b9e3a27f1902b66655ab53
--- /dev/null
+++ b/pfam_gap_rates/zf-RING_11.gap.json
@@ -0,0 +1 @@
+{"family": "zf-RING_11", "n_seqs": 534, "length": 34, "gap_rates": [0.41385767790262173, 0.02247191011235955, 0.018726591760299626, 0.013108614232209739, 0.013108614232209739, 0.011235955056179775, 0.011235955056179775, 0.009363295880149813, 0.009363295880149813, 0.0149812734082397, 0.9307116104868914, 0.8913857677902621, 0.0056179775280898875, 0.0018726591760299626, 0.0018726591760299626, 0.8876404494382022, 0.8745318352059925, 0.0018726591760299626, 0.0, 0.0056179775280898875, 0.0018726591760299626, 0.0056179775280898875, 0.0, 0.8782771535580525, 0.0, 0.0, 0.0, 0.013108614232209739, 0.0149812734082397, 0.024344569288389514, 0.028089887640449437, 0.06179775280898876, 0.07303370786516854, 0.13857677902621723], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/zf-RING_UBOX.gap.json b/pfam_gap_rates/zf-RING_UBOX.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..66003a839a056ec36215d94a53426adbf981c86f
--- /dev/null
+++ b/pfam_gap_rates/zf-RING_UBOX.gap.json
@@ -0,0 +1 @@
+{"family": "zf-RING_UBOX", "n_seqs": 3145, "length": 59, "gap_rates": [0.015580286168521463, 0.015580286168521463, 0.012400635930047695, 0.010174880763116057, 0.009220985691573928, 0.008267090620031796, 0.00794912559618442, 0.00794912559618442, 0.02480127186009539, 0.7818759936406995, 0.882670906200318, 0.8604133545310015, 0.7694753577106518, 0.013990461049284579, 0.002861685214626391, 0.8791732909379968, 0.9364069952305246, 0.4804451510333863, 0.0019077901430842607, 0.49793322734499207, 0.013990461049284579, 0.81939586645469, 0.01589825119236884, 0.0, 0.0, 0.0, 0.0, 0.0003179650238473768, 0.0006359300476947536, 0.0009538950715421304, 0.004451510333863275, 0.005405405405405406, 0.006359300476947536, 0.9208267090620031, 0.8798092209856916, 0.22575516693163752, 0.5351351351351351, 0.7462639109697933, 0.8209856915739269, 0.8947535771065183, 0.9418124006359301, 0.912241653418124, 0.8709062003179651, 0.7885532591414944, 0.6559618441971383, 0.463275039745628, 0.2273449920508744, 0.23243243243243245, 0.1987281399046105, 0.20286168521462639, 0.20635930047694753, 0.2149443561208267, 0.22162162162162163, 0.22798092209856916, 0.2343402225755167, 0.24133545310015897, 0.24515103338632752, 0.2492845786963434, 0.29920508744038155], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/zf-TFIIB.gap.json b/pfam_gap_rates/zf-TFIIB.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..73427a992bea18cb0d9b12ba0224d69e79226b07
--- /dev/null
+++ b/pfam_gap_rates/zf-TFIIB.gap.json
@@ -0,0 +1 @@
+{"family": "zf-TFIIB", "n_seqs": 507, "length": 48, "gap_rates": [0.5069033530571992, 0.09861932938856016, 0.09270216962524655, 0.09270216962524655, 0.08875739644970414, 0.08875739644970414, 0.08678500986193294, 0.814595660749507, 0.08481262327416174, 0.04930966469428008, 0.047337278106508875, 0.9447731755424064, 0.9230769230769231, 0.03353057199211045, 0.029585798816568046, 0.029585798816568046, 0.021696252465483234, 0.7672583826429981, 0.834319526627219, 0.7159763313609467, 0.009861932938856016, 0.0039447731755424065, 0.9467455621301775, 0.0019723865877712033, 0.0019723865877712033, 0.0, 0.0, 0.0019723865877712033, 0.0, 0.0, 0.0, 0.02564102564102564, 0.0019723865877712033, 0.0039447731755424065, 0.007889546351084813, 0.007889546351084813, 0.009861932938856016, 0.009861932938856016, 0.01972386587771203, 0.029585798816568046, 0.03747534516765286, 0.0631163708086785, 0.07692307692307693, 0.11834319526627218, 0.15581854043392504, 0.2938856015779093, 0.514792899408284, 0.7712031558185405], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/zf-U11-48K.gap.json b/pfam_gap_rates/zf-U11-48K.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d156551c9402c6bf1e810b8fda9862f9b22ed359
--- /dev/null
+++ b/pfam_gap_rates/zf-U11-48K.gap.json
@@ -0,0 +1 @@
+{"family": "zf-U11-48K", "n_seqs": 439, "length": 25, "gap_rates": [0.39635535307517084, 0.14123006833712984, 0.04783599088838269, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.002277904328018223, 0.19817767653758542], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/zf-nanos.gap.json b/pfam_gap_rates/zf-nanos.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..d105d25e9428876fab332dda382b516b7762f9fa
--- /dev/null
+++ b/pfam_gap_rates/zf-nanos.gap.json
@@ -0,0 +1 @@
+{"family": "zf-nanos", "n_seqs": 187, "length": 68, "gap_rates": [0.026737967914438502, 0.026737967914438502, 0.026737967914438502, 0.026737967914438502, 0.026737967914438502, 0.026737967914438502, 0.0213903743315508, 0.0213903743315508, 0.9197860962566845, 0.9197860962566845, 0.9197860962566845, 0.9197860962566845, 0.9197860962566845, 0.9197860962566845, 0.9411764705882353, 0.9197860962566845, 0.9197860962566845, 0.9197860962566845, 0.9197860962566845, 0.9197860962566845, 0.9197860962566845, 0.9144385026737968, 0.0213903743315508, 0.0213903743315508, 0.0213903743315508, 0.0213903743315508, 0.0213903743315508, 0.016042780748663103, 0.016042780748663103, 0.0053475935828877, 0.0053475935828877, 0.0053475935828877, 0.0, 0.0, 0.0, 0.06951871657754011, 0.0106951871657754, 0.0106951871657754, 0.026737967914438502, 0.026737967914438502, 0.0213903743315508, 0.0106951871657754, 0.0053475935828877, 0.0053475935828877, 0.0053475935828877, 0.0106951871657754, 0.0106951871657754, 0.0106951871657754, 0.016042780748663103, 0.016042780748663103, 0.016042780748663103, 0.016042780748663103, 0.016042780748663103, 0.016042780748663103, 0.016042780748663103, 0.016042780748663103, 0.016042780748663103, 0.016042780748663103, 0.026737967914438502, 0.026737967914438502, 0.03208556149732621, 0.03208556149732621, 0.03208556149732621, 0.03208556149732621, 0.03208556149732621, 0.03208556149732621, 0.0427807486631016, 0.8716577540106952], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/zf-primase.gap.json b/pfam_gap_rates/zf-primase.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..3ddffbed4d919139af3ddb2bbe101a2f8634dd35
--- /dev/null
+++ b/pfam_gap_rates/zf-primase.gap.json
@@ -0,0 +1 @@
+{"family": "zf-primase", "n_seqs": 271, "length": 48, "gap_rates": [0.05166051660516605, 0.04059040590405904, 0.02952029520295203, 0.02214022140221402, 0.02214022140221402, 0.014760147601476014, 0.014760147601476014, 0.014760147601476014, 0.014760147601476014, 0.014760147601476014, 0.01107011070110701, 0.01845018450184502, 0.01845018450184502, 0.9077490774907749, 0.014760147601476014, 0.01107011070110701, 0.0036900369003690036, 0.007380073800738007, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.01107011070110701, 0.01845018450184502, 0.940959409594096, 0.02214022140221402, 0.02214022140221402, 0.02214022140221402, 0.02214022140221402, 0.02214022140221402, 0.02214022140221402, 0.02214022140221402, 0.02214022140221402, 0.025830258302583026, 0.03690036900369004, 0.055350553505535055, 0.06273062730627306, 0.07011070110701106, 0.07380073800738007, 0.0996309963099631, 0.11070110701107011, 0.1881918819188192, 0.22878228782287824, 0.25461254612546125], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file
diff --git a/pfam_gap_rates/zinc_ribbon_10.gap.json b/pfam_gap_rates/zinc_ribbon_10.gap.json
new file mode 100644
index 0000000000000000000000000000000000000000..a821f9ebd6c3d97f137ef5fb01226797ad0a2466
--- /dev/null
+++ b/pfam_gap_rates/zinc_ribbon_10.gap.json
@@ -0,0 +1 @@
+{"family": "zinc_ribbon_10", "n_seqs": 280, "length": 60, "gap_rates": [0.3107142857142857, 0.039285714285714285, 0.02142857142857143, 0.02142857142857143, 0.017857142857142856, 0.017857142857142856, 0.017857142857142856, 0.017857142857142856, 0.017857142857142856, 0.017857142857142856, 0.017857142857142856, 0.017857142857142856, 0.017857142857142856, 0.017857142857142856, 0.9035714285714286, 0.925, 0.8571428571428571, 0.575, 0.5642857142857143, 0.5392857142857143, 0.014285714285714285, 0.014285714285714285, 0.007142857142857143, 0.0035714285714285713, 0.0035714285714285713, 0.0, 0.0, 0.0, 0.0, 0.0035714285714285713, 0.0035714285714285713, 0.0035714285714285713, 0.0035714285714285713, 0.0035714285714285713, 0.0035714285714285713, 0.0035714285714285713, 0.0035714285714285713, 0.007142857142857143, 0.04642857142857143, 0.7535714285714286, 0.7, 0.02857142857142857, 0.017857142857142856, 0.017857142857142856, 0.02142857142857143, 0.025, 0.025, 0.03571428571428571, 0.7857142857142857, 0.04642857142857143, 0.05, 0.05, 0.05, 0.05, 0.05, 0.05, 0.05, 0.05, 0.05714285714285714, 0.09642857142857143], "gap_symbol": "-", "mismatch_seqs": 0}
\ No newline at end of file