---
tags:
- protein-sequence-generation
- bioinformatics
- pfam
- ancestral-sequence-reconstruction
- protein-family
license: other
---

# LineageFlow Pfam Assets

This dataset contains the preprocessed Pfam assets used by the released LineageFlow inference pipeline.

## Contents

- `pfam_priors_asr_mad/`: family-specific ASR Dirichlet priors.
- `pfam_gap_rates/`: family-specific alignment gap statistics.
- `pfam_fastas_clean/`: cleaned Pfam family alignments.
- `pfam_pi_smooth_tau0.5_gap060_gt80_020.csv`: family sampling distribution.
- `pfam_priors_keep_ids_gap060_gt80_020.txt`: family keep list used by the default sampler.

## Usage

```bash
hf download jinxbye/LineageFlow-assets \
  --repo-type dataset \
  --local-dir dataset
```

The inference scripts expect these assets under `dataset/` by default. All paths can be overridden from the command line.

## Notes

These files are preprocessed from Pfam family alignments. Please follow the license and usage terms of the original Pfam resource when using the data.