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README.md
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# BioASQ - All Question Types
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A comprehensive
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## Dataset Description
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## Source and Attribution
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**IMPORTANT**: To use BioASQ data, you must:
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1. Register at: https://bioasq.org/
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3. Cite the BioASQ papers (see below)
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4. Acknowledge the BioASQ dataset in any publications
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### Citations
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If you use this dataset, please cite:
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**Primary BioASQ Paper**:
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```bibtex
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@article{tsatsaronis2015bioasq,
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title={An overview of the BIOASQ large-scale biomedical semantic indexing and question answering competition},
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author={Tsatsaronis, George and Balikas, Georgios and Malakasiotis, Prodromos and Partalas, Ioannis and Zschunke, Matthias and Alvers, Michael R and Weissenborn, Dirk and Krithara, Anastasia and Petridis, Sergios and Polychronopoulos, Dimitris and others},
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journal={BMC bioinformatics},
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volume={16},
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number={1},
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pages={1--28},
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year={2015},
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publisher={BioMed Central}
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}
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```
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**PaperSearchQA** (if used in context of this project):
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```bibtex
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@misc{burgess2026papersearchqalearningsearchreason,
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title={PaperSearchQA: Learning to Search and Reason over Scientific Papers with RLVR},
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author={James Burgess and Jan N. Hansen and Duo Peng and Yuhui Zhang and Alejandro Lozano and Min Woo Sun and Emma Lundberg and Serena Yeung-Levy},
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year={2026},
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eprint={2601.18207},
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archivePrefix={arXiv},
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primaryClass={cs.LG},
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url={https://arxiv.org/abs/2601.18207},
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}
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```
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## License and Terms of Use
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### BioASQ License
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The original BioASQ data is available for **research and educational purposes** under specific terms:
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- **Non-commercial use**: Freely available for academic research and education
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- **Commercial use**: Requires written permission from BioASQ organizers
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- **Attribution**: Must cite BioASQ papers and acknowledge the dataset
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- **Registration**: Users must register at https://bioasq.org/
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For full license terms, see: https://bioasq.org/participate
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### This Dataset
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This reorganized version (with question types as splits) is provided for research convenience. All terms and conditions of the original BioASQ license apply.
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## Dataset Structure
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### Data Fields
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dataset = load_dataset("jmhb/BioASQ", split=["factoid", "yesno"])
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```
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##
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- **BioASQ
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- **BioASQ Participants Area**: https://participants-area.bioasq.org/
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- **PaperSearchQA Project**: https://jmhb0.github.io/PaperSearchQA/
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## Acknowledgments
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# BioASQ - All Question Types
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A comprehensive collection of BioASQ challenge questions organized by question type as separate splits.
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## Purpose
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This dataset is a **convenience collection** of BioASQ questions reformatted for easier use. The original source data is from the [BioASQ Challenge](http://bioasq.org/). We created this reorganized version (with question types as splits) to facilitate evaluation in our PaperSearchQA work.
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**IMPORTANT**: This is not the original BioASQ dataset. We have simply reorganized the BioASQ data into splits by question type. All underlying question and answer data is from BioASQ.
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## Dataset Description
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## Source and Attribution
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**Original Data Source**: [BioASQ Challenge](http://bioasq.org/)
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BioASQ is a series of challenges on large-scale biomedical semantic indexing and question answering.
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**IMPORTANT**: To use BioASQ data, you must:
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1. Register at: https://bioasq.org/
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3. Cite the BioASQ papers (see below)
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4. Acknowledge the BioASQ dataset in any publications
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## Dataset Structure
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### Data Fields
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dataset = load_dataset("jmhb/BioASQ", split=["factoid", "yesno"])
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```
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## Citations
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### BioASQ (Required)
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If you use this dataset, you **must** cite the original BioASQ papers:
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```bibtex
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@article{krithara2023bioasq,
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title={BioASQ-QA: A manually curated corpus for Biomedical Question Answering},
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author={Krithara, Anastasia and Nentidis, Anastasios and Bougiatiotis, Konstantinos and Paliouras, Georgios},
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journal={Scientific Data},
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volume={10},
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number={1},
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pages={170},
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year={2023},
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publisher={Nature Publishing Group UK London}
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}
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@article{tsatsaronis2015overview,
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title={An overview of the BIOASQ large-scale biomedical semantic indexing and question answering competition},
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author={Tsatsaronis, George and Balikas, Georgios and Malakasiotis, Prodromos and Partalas, Ioannis and Zschunke, Matthias and Alvers, Michael R and Weissenborn, Dirk and Krithara, Anastasia and Petridis, Sergios and Polychronopoulos, Dimitris and others},
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journal={BMC bioinformatics},
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volume={16},
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number={1},
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pages={138},
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year={2015},
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publisher={Springer}
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}
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```
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### PaperSearchQA (Optional)
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If you use this dataset as part of PaperSearchQA evaluation, please also cite:
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```bibtex
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@misc{burgess2026papersearchqalearningsearchreason,
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title={PaperSearchQA: Learning to Search and Reason over Scientific Papers with RLVR},
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author={James Burgess and Jan N. Hansen and Duo Peng and Yuhui Zhang and Alejandro Lozano and Min Woo Sun and Emma Lundberg and Serena Yeung-Levy},
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year={2026},
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eprint={2601.18207},
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archivePrefix={arXiv},
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primaryClass={cs.LG},
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url={https://arxiv.org/abs/2601.18207},
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}
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```
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## License and Terms of Use
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### BioASQ License
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The original BioASQ data is available for **research and educational purposes** under specific terms:
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- **Non-commercial use**: Freely available for academic research and education
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- **Commercial use**: Requires written permission from BioASQ organizers
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- **Attribution**: Must cite BioASQ papers and acknowledge the dataset
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- **Registration**: Users must register at https://bioasq.org/
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For full license terms, see: https://bioasq.org/participate
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### This Dataset
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This reorganized version is provided for research convenience. All terms and conditions of the original BioASQ license apply.
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## Links
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- **BioASQ Challenge**: [http://bioasq.org/](http://bioasq.org/)
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- **BioASQ Participants Area**: [https://participants-area.bioasq.org/](https://participants-area.bioasq.org/)
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- **PaperSearchQA Project**: [https://jmhb0.github.io/PaperSearchQA](https://jmhb0.github.io/PaperSearchQA)
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- **Code Repository**: [GitHub](https://github.com/jmhb0/PaperSearchQA)
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## Acknowledgments
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