Download code/build_pool.py from jncarlo/tinymix: direct link, hf CLI and curl.
- Browser
- Download file 29.7 kB
-
https://huggingface.co/datasets/jncarlo/tinymix/resolve/main/code/build_pool.py
- Command line
-
hf download hf://datasets/jncarlo/tinymix/code/build_pool.py
-
curl -L -o build_pool.py https://huggingface.co/datasets/jncarlo/tinymix/resolve/main/code/build_pool.py
29.7 kB
| """Parallel, resource-bounded build for big sizes: python build_pool.py 1000M [options] | |
| Same filters and safety nets as build.py (process, probe and the relaxation ladder come from there). | |
| What is different: | |
| - Jobs. A source whose estimated time (from work/100M/stats.json) exceeds --job-hours is split into | |
| shards (whole dataset files, or every k-th row). Jobs run longest first in at most --workers | |
| processes, at below-normal priority and with one thread each, so the machine stays usable. | |
| - Memory. Dedup keeps 8-byte keys per document (the md5 key and the LSH band keys build.Dedup | |
| uses) instead of datasketch's index, and each job only holds its own. A global pass over the key | |
| files with numpy then drops documents that repeat across jobs; the first occurrence in MIX order | |
| wins, and a document that matches any earlier one is dropped (build.Dedup only compares against | |
| kept ones, so this is marginally stricter). Jobs collect --overshoot extra words so that pass | |
| rarely leaves a source short, and the excess is trimmed. | |
| The scheduler waits to start jobs while free RAM is below --min-free-gb and stops the youngest job | |
| when it falls below --kill-free-gb; a stopped job resumes later. | |
| - Robustness. Each job checkpoints every --ckpt-seconds, after flushing its data, so a hard kill | |
| loses at most that interval. On a network error it reopens the stream and skips the documents | |
| already seen (the streams are deterministic: fixed seed and shard). A job that crashes restarts | |
| from its checkpoint up to --retries times. Rerunning the same command resumes everything and | |
| skips finished jobs. | |
| Output: work/<size>/<source>.jsonl and <source>.topup.jsonl plus stats.json, which assemble.py reads as | |
| before. Per-job files (data, keys, checkpoints, logs) live in work/<size>/jobs/. | |
| Testing: --scale 0.002 multiplies every quota (output in work/<size>_x0.002/); a small --job-hours | |
| forces shards. | |
| """ | |
| import argparse | |
| import hashlib | |
| import itertools | |
| import json | |
| import math | |
| import multiprocessing as mp | |
| import os | |
| import re | |
| import shutil | |
| import statistics | |
| import sys | |
| import time | |
| import traceback | |
| from collections import Counter | |
| from pathlib import Path | |
| # one thread per process for numpy, BLAS and Arrow; spawned workers inherit these | |
| for _v in ("OMP_NUM_THREADS", "OPENBLAS_NUM_THREADS", "MKL_NUM_THREADS"): | |
| os.environ.setdefault(_v, "1") | |
| import numpy as np | |
| import psutil | |
| from datasketch import MinHash, MinHashLSH | |
| from wordfreq import top_n_list | |
| import build | |
| import mix | |
| import sources | |
| ROOT = build.ROOT | |
| _LSH = MinHashLSH(threshold=0.8, num_perm=64) # build.Dedup's parameters; only b and r are used | |
| BANDS, ROWS = _LSH.b, _LSH.r | |
| _MH = MinHash(num_perm=64) # reused permutations; building them per document is most of MinHash's cost | |
| PERMS, SCHEME = _MH.permutations, _MH.scheme | |
| # odd 64-bit multipliers that fold the ROWS values of a band into one key | |
| MIXER = np.random.RandomState(7).randint(1, 2**62, size=ROWS, dtype=np.int64).astype(np.uint64) | np.uint64(1) | |
| REC = np.dtype([("x", "<u8"), ("b", "<u8", (BANDS,)), ("w", "<u4")]) | |
| # not streamed through sources._ds (so they cannot be sharded), or row order matters (poetry) | |
| NO_SHARD = {"tinystories", "tinydialogues", "tinyhelen", "poetry"} | |
| # Gutenberg rows are whole books in ~300 MB row groups: filling the shuffle buffer from datasets' | |
| # default 10 files at once peaks at 6 GB, from one file at 1.7 GB (and is faster) | |
| INPUT_SHARDS = {"gutenberg_books": 1} | |
| # expected peak RAM per worker (GB), measured: a streamed parquet source with a 20k-row shuffle | |
| # buffer sits near 1.4. The scheduler raises these to the peaks it observes during the run. | |
| MEM_GB = {"gutenberg_books": 2.0} | |
| MEM_DEFAULT_GB = 1.5 | |
| def doc_keys(text): | |
| """The md5 key and the LSH band keys build.Dedup would use for this text, as 64-bit ints.""" | |
| x = int.from_bytes(hashlib.md5(re.sub(r"\W+", "", text.lower()).encode()).digest()[:8], "little") | |
| w = text.lower().split() | |
| mh = MinHash(num_perm=64, permutations=PERMS, scheme=SCHEME) | |
| mh.update_batch([" ".join(w[i:i + 5]).encode() for i in range(max(len(w) - 4, 1))]) | |
| hv = mh.hashvalues[:BANDS * ROWS].astype(np.uint64).reshape(BANDS, ROWS) | |
| with np.errstate(over="ignore"): | |
| return x, (hv * MIXER).sum(axis=1, dtype=np.uint64) | |
| class Keys: | |
| """build.Dedup on plain sets of 64-bit keys: same decisions, a fraction of the memory.""" | |
| def __init__(self): | |
| self.exact, self.bands = set(), [set() for _ in range(BANDS)] | |
| def load(self, path): | |
| if path.exists(): | |
| recs = np.fromfile(path, dtype=REC) | |
| self.exact.update(recs["x"].tolist()) | |
| for i, s in enumerate(self.bands): | |
| s.update(recs["b"][:, i].tolist()) | |
| def seen(self, x, bands): | |
| if x in self.exact: | |
| return True | |
| self.exact.add(x) | |
| b = bands.tolist() | |
| if any(k in s for s, k in zip(self.bands, b)): | |
| return True | |
| for s, k in zip(self.bands, b): | |
| s.add(k) | |
| return False | |
| def write_json(path, obj): | |
| tmp = path.with_suffix(path.suffix + ".tmp") | |
| tmp.write_text(json.dumps(obj), encoding="utf-8") | |
| for i in range(20): # Windows refuses the replace while another process has the file open | |
| try: | |
| os.replace(tmp, path) | |
| return | |
| except PermissionError: | |
| time.sleep(0.5) | |
| os.replace(tmp, path) | |
| def read_json(path): | |
| try: | |
| return json.loads(path.read_text(encoding="utf-8")) | |
| except (OSError, ValueError): | |
| return None | |
| def apply_scale(scale, size): | |
| """--scale: multiply this size's quotas in memory (parent and every worker), for test runs.""" | |
| if scale == 1: | |
| return | |
| i = mix.SIZES[size] | |
| for k, (g, q) in list(mix.MIX.items()): | |
| mix.MIX[k] = (g, tuple(v * scale if j == i else v for j, v in enumerate(q))) | |
| def paths(jobs_dir, job): | |
| return {ext: jobs_dir / f"{job['id']}.{ext}" for ext in ("jsonl", "keys", "ckpt", "done", "log")} | |
| def is_done(jobs_dir, job): | |
| d = read_json(paths(jobs_dir, job)["done"]) | |
| return bool(d) and abs(d["quota_M"] - job["quota"] / 1e6) < 1e-6 | |
| # ---------------------------------------------------------------- worker side | |
| def robust_stream(name, size, start, st, tries=8): | |
| """Yield the source's documents from index `start`; on a stream error reopen the stream and skip | |
| what was already yielded.""" | |
| pos, fails = start, 0 | |
| while True: | |
| try: | |
| for doc in itertools.islice(sources.REGISTRY[name](size), pos, None): | |
| pos += 1 | |
| fails = 0 | |
| yield doc | |
| return | |
| except Exception as e: | |
| fails += 1 | |
| st["retries"] = st.get("retries", 0) + 1 | |
| if fails > tries: | |
| raise | |
| wait = min(600, 15 * 2 ** fails) | |
| print(f"stream error at doc {pos} ({e!r}); retry {fails}/{tries} in {wait}s", flush=True) | |
| time.sleep(wait) | |
| def consumed_docs(job, jobs_dir): | |
| """Where a top-up starts: after what its source's primary job read, when both read the same stream.""" | |
| if not job["tag"] or list(job["shard"]) != [0, 1]: | |
| return 0 | |
| d = read_json(jobs_dir / f"{job['name']}.s0of1.done") | |
| return d["scanned_docs"] if d else 0 | |
| def run_job(job, size, jobs_dir, ckpt_seconds): | |
| """build.build_source for one job, with checkpoints and resume.""" | |
| p = paths(jobs_dir, job) | |
| if is_done(jobs_dir, job): | |
| return | |
| name, quota = job["name"], job["quota"] | |
| genre = mix.MIX[name][0] | |
| base = mix.TIERS[size] | |
| vocab = set(top_n_list("en", base["vocab"])) | |
| dedup = Keys() | |
| for seed in job["seeds"]: # a top-up must not repeat its own source's primary files | |
| dedup.load(Path(seed)) | |
| st = read_json(p["ckpt"]) | |
| # resuming skips documents by position, so it is only valid on the very same stream | |
| stream = [list(job["shard"]), INPUT_SHARDS.get(name)] | |
| if st and (abs(st["quota"] - quota) > 1 or st.get("stream") != stream): | |
| st = None # options changed since the checkpoint: start over | |
| openers = Counter() | |
| if st: | |
| # drop whatever was written after the last checkpoint, then rebuild state from the rest | |
| with p["jsonl"].open("r+b") as f: | |
| f.truncate(st["bytes"]) | |
| with p["keys"].open("r+b") as f: | |
| f.truncate(st["kept"] * REC.itemsize) | |
| dedup.load(p["keys"]) | |
| for line in p["jsonl"].open(encoding="utf-8"): | |
| openers[" ".join(json.loads(line)["text"].lower().split()[:4])] += 1 | |
| print(f"resume at doc {st['seen_docs']}, {st['got'] / 1e6:.2f}M/{quota / 1e6:.2f}M words", flush=True) | |
| else: | |
| step, probe_report = build.probe(name, size, genre, base, vocab, quota) | |
| print(f"probe: start at ladder step {step}; {probe_report[-1]}", flush=True) | |
| st = dict(quota=quota, stream=stream, step=step, probe=probe_report, relaxed=[dict(step=step, at_words=0)], | |
| got=0, scanned=0, kept=0, seen_docs=consumed_docs(job, jobs_dir), rej={}, seconds=0, retries=0, | |
| bytes=0) | |
| p["jsonl"].write_bytes(b"") | |
| p["keys"].write_bytes(b"") | |
| step = st["step"] | |
| tier, cov = build.at_step(base, step) | |
| got, scanned, kept, seen = st["got"], st["scanned"], st["kept"], st["seen_docs"] | |
| rej = Counter(st["rej"]) | |
| win_scanned = win_kept = win_docs = 0 | |
| abort, t0, last, elapsed0 = None, time.time(), time.time(), st["seconds"] | |
| with p["jsonl"].open("ab") as f, p["keys"].open("ab") as kf: | |
| def save(): | |
| for h in (f, kf): | |
| h.flush() | |
| os.fsync(h.fileno()) | |
| st.update(step=step, got=got, scanned=scanned, kept=kept, seen_docs=seen, rej=dict(rej), | |
| seconds=round(elapsed0 + time.time() - t0), bytes=f.tell()) | |
| write_json(p["ckpt"], st) | |
| stream = robust_stream(name, size, seen, st) if got < quota else () | |
| for doc in stream: | |
| seen += 1 | |
| win_docs += 1 | |
| w = build.doc_words(doc) | |
| scanned += w | |
| win_scanned += w | |
| if scanned > quota * mix.MAX_SCAN: | |
| abort = "scan_cap" | |
| break | |
| docs, why = build.process(doc, genre, tier, vocab, name, cov) | |
| if why: | |
| rej[why] += 1 | |
| for text in docs: | |
| op = " ".join(text.lower().split()[:4]) | |
| if genre != "poetry" and openers[op] >= max(5, 0.005 * kept): | |
| rej["opener_cap"] += 1 | |
| continue | |
| x, bands = doc_keys(text) | |
| if dedup.seen(x, bands): | |
| rej["duplicate"] += 1 | |
| win_scanned -= len(text.split()) # says nothing about the yield of what is left | |
| continue | |
| openers[op] += 1 | |
| kept += 1 | |
| n = len(text.split()) | |
| got += n | |
| win_kept += n | |
| f.write((json.dumps({"text": text, "genre": genre, "src": name}) + "\n").encode("utf-8")) | |
| rec = np.zeros(1, REC) | |
| rec["x"], rec["b"], rec["w"] = x, bands, n | |
| kf.write(rec.tobytes()) | |
| if got >= quota: | |
| break | |
| if time.time() - last >= ckpt_seconds: | |
| save() | |
| last = time.time() | |
| print(f"{seen} docs, kept {kept}, {got / 1e6:.2f}M/{quota / 1e6:.2f}M words, " | |
| f"step {step}, top rejections {rej.most_common(3)}", flush=True) | |
| if win_docs >= mix.WINDOW: | |
| # same rule as build.py: climb a ladder step when the recent yield cannot finish | |
| # within the scan budget, give up at the top of the ladder | |
| recent = win_kept / win_scanned if win_scanned > 0 else 0 | |
| need = (quota - got) / recent if recent else float("inf") | |
| if win_scanned > 0 and need > quota * mix.MAX_SCAN - scanned: | |
| if step + 1 < len(mix.LADDER): | |
| step += 1 | |
| tier, cov = build.at_step(base, step) | |
| st["relaxed"].append(dict(step=step, at_words=got)) | |
| print(f"yield {100 * recent:.1f}% too low, relaxing to step {step}", flush=True) | |
| else: | |
| abort = "projected_shortfall" | |
| break | |
| win_scanned = win_kept = win_docs = 0 | |
| save() | |
| stats = dict(job=job["id"], source=name + job["tag"], genre=genre, target_M=job["target"] / 1e6, | |
| quota_M=quota / 1e6, words_M=round(got / 1e6, 3), docs=kept, scanned_docs=seen, | |
| scanned_words_M=round(scanned / 1e6, 1), seconds=st["seconds"], | |
| stopped="quota" if got >= quota else (abort or "source_exhausted"), | |
| relaxation=st["relaxed"], probe=st["probe"], rejections=dict(rej.most_common()), | |
| stream_retries=st.get("retries", 0)) | |
| write_json(p["done"], stats) | |
| p["ckpt"].unlink(missing_ok=True) | |
| print(f"done: {stats['words_M']}M words, stopped by {stats['stopped']}", flush=True) | |
| def worker(job, size, scale, ckpt_seconds, jobs_dir): | |
| jobs_dir = Path(jobs_dir) | |
| sys.stdout = sys.stderr = paths(jobs_dir, job)["log"].open("a", encoding="utf-8", buffering=1) | |
| print(f"== {job['id']} pid {os.getpid()} {time.strftime('%Y-%m-%d %H:%M:%S')}", flush=True) | |
| psutil.Process().nice(psutil.BELOW_NORMAL_PRIORITY_CLASS if os.name == "nt" else 10) | |
| try: | |
| import pyarrow | |
| pyarrow.set_cpu_count(1) | |
| pyarrow.set_io_thread_count(2) | |
| except Exception: | |
| pass | |
| apply_scale(scale, size) | |
| sources.SHARD = tuple(job["shard"]) | |
| sources.INPUT_SHARDS.update(INPUT_SHARDS) | |
| try: | |
| run_job(job, size, jobs_dir, ckpt_seconds) | |
| except Exception: | |
| traceback.print_exc() | |
| sys.exit(1) | |
| # ---------------------------------------------------------------- parent side | |
| class Log: | |
| def __init__(self, path): | |
| self.f = path.open("a", encoding="utf-8", buffering=1) | |
| def __call__(self, msg): | |
| line = f"{time.strftime('%H:%M:%S')} {msg}" | |
| print(line, flush=True) | |
| self.f.write(line + "\n") | |
| def seconds_per_word(): | |
| """Build seconds per target word for each source, measured on the 100M build.""" | |
| s = read_json(ROOT / "work" / "100M" / "stats.json") or {} | |
| rates = {r["source"]: r["seconds"] / (r["target_M"] * 1e6) | |
| for r in s.get("sources", []) if r.get("target_M") and "seconds" in r} | |
| default = statistics.median(rates.values()) if rates else 1e-4 | |
| return lambda name: rates.get(name, default) | |
| def plan_jobs(targets, tag, args, seeds_for): | |
| """Split each (source, words) into shards of at most --job-hours estimated time.""" | |
| rate, jobs = seconds_per_word(), [] | |
| for name, target in targets: | |
| if target <= 0: | |
| continue | |
| est = rate(name) * target | |
| k = 1 if name in NO_SHARD else max(1, min(args.max_shards, math.ceil(est / (args.job_hours * 3600)))) | |
| for i in range(k): | |
| jobs.append(dict(id=f"{name}{tag}.s{i}of{k}", name=name, tag=tag, shard=(i, k), target=target / k, | |
| quota=target / k * (1 + args.overshoot), est=est / k, seeds=seeds_for(name))) | |
| return jobs | |
| def run_pool(jobs, args, size, jobs_dir, log): | |
| """Run jobs in at most --workers processes, longest first, within the RAM and disk limits. | |
| Returns the jobs that failed more than --retries times.""" | |
| pending = sorted((j for j in jobs if not is_done(jobs_dir, j)), key=lambda j: -j["est"]) | |
| if not pending: | |
| return [] | |
| total_est = sum(j["est"] for j in pending) | |
| log(f"{len(pending)} jobs to run ({len(jobs) - len(pending)} already done), about " | |
| f"{total_est / 3600:.1f} CPU hours by the 100M rates, {args.workers} workers") | |
| ctx = mp.get_context("spawn") | |
| running, attempts, failed = {}, Counter(), [] | |
| # a job stopped twice for memory runs alone from then on, otherwise it could be stopped forever | |
| mem_stops, alone = Counter(), set() | |
| peak = Counter() # observed peak RSS per source, GB | |
| hold = kill_hold = last_status = 0.0 | |
| def need(job): | |
| return max(MEM_GB.get(job["name"], MEM_DEFAULT_GB), peak[job["name"]]) | |
| def rss(proc): | |
| try: | |
| return psutil.Process(proc.pid).memory_info().rss / 1e9 | |
| except psutil.Error: | |
| return 0.0 | |
| def stop(jid, why): | |
| proc, job, _ = running.pop(jid) | |
| proc.terminate() | |
| proc.join() | |
| pending.insert(0, job) | |
| log(f"stopped {jid} ({why}); it resumes from its checkpoint") | |
| def pick(free, reserved): | |
| """First pending job whose expected peak leaves the stop threshold clear, so a big job that | |
| does not fit yet does not hold back smaller ones; a job marked to run alone waits for the rest.""" | |
| if alone & set(running): | |
| return None | |
| for j in pending: | |
| if j["id"] in alone: | |
| return j if not running else None | |
| if not running or free - reserved - need(j) >= args.kill_free_gb + 0.5: | |
| return j | |
| return None | |
| try: | |
| while pending or running: | |
| now = time.time() | |
| for jid, (proc, job, _) in list(running.items()): | |
| if proc.is_alive(): | |
| continue | |
| proc.join() | |
| del running[jid] | |
| d = read_json(paths(jobs_dir, job)["done"]) | |
| if d: | |
| log(f"done {jid}: {d['words_M']}M words in {d['seconds'] / 60:.0f} min, stopped by {d['stopped']}") | |
| continue | |
| attempts[jid] += 1 | |
| if attempts[jid] > args.retries: | |
| failed.append(job) | |
| log(f"FAILED {jid} after {attempts[jid]} attempts, see {paths(jobs_dir, job)['log']}") | |
| else: | |
| pending.insert(0, job) | |
| hold = max(hold, now + 30) | |
| log(f"{jid} exited with code {proc.exitcode}; restart {attempts[jid]}/{args.retries}") | |
| free = psutil.virtual_memory().available / 1e9 | |
| # memory a running job is still expected to take (it grows while its buffers fill) | |
| reserved = 0.0 | |
| for proc, job, _ in running.values(): | |
| r = rss(proc) | |
| peak[job["name"]] = max(peak[job["name"]], r) | |
| reserved += max(0.0, need(job) - r) | |
| disk = shutil.disk_usage(jobs_dir).free / 1e9 | |
| if disk < args.min_disk_gb: | |
| for jid in list(running): | |
| stop(jid, f"only {disk:.1f} GB free on disk") | |
| raise SystemExit(f"stopped: {disk:.1f} GB free on disk, below --min-disk-gb {args.min_disk_gb}. " | |
| "Free space and rerun the same command to resume.") | |
| # the last running job is never stopped: that would only trade progress for nothing | |
| if free < args.kill_free_gb and len(running) > 1 and now >= kill_hold: | |
| # one job at a time, then give the OS time to reclaim its memory before judging again | |
| jid = max(running, key=lambda j: running[j][2]) | |
| stop(jid, f"free RAM {free:.1f} GB < {args.kill_free_gb}") | |
| mem_stops[jid] += 1 | |
| if mem_stops[jid] >= 2 and jid not in alone: | |
| alone.add(jid) | |
| log(f"{jid} will run alone: it was stopped {mem_stops[jid]} times for memory") | |
| hold, kill_hold = now + 120, now + 30 | |
| elif (len(running) < args.workers and pending and now >= hold and free >= args.min_free_gb | |
| and (job := pick(free, reserved))): | |
| pending.remove(job) | |
| proc = ctx.Process(target=worker, args=(job, size, args.scale, args.ckpt_seconds, str(jobs_dir))) | |
| proc.start() | |
| running[job["id"]] = (proc, job, now) | |
| hold = now + args.stagger | |
| log(f"start {job['id']} (est {job['est'] / 60:.0f} min, ~{need(job):.1f} GB)") | |
| if now - last_status >= args.status_seconds: | |
| last_status = now | |
| parts = [] | |
| for jid, (proc, job, _) in running.items(): | |
| ck = read_json(paths(jobs_dir, job)["ckpt"]) | |
| prog = f"{100 * ck['got'] / job['quota']:.0f}%" if ck else "probe" | |
| parts.append(f"{jid} {prog} {rss(proc):.1f}GB") | |
| log(f"status: {len(pending)} pending, free RAM {free:.1f} GB | " + " | ".join(parts)) | |
| time.sleep(2) | |
| except KeyboardInterrupt: | |
| for proc, _, _ in running.values(): | |
| proc.terminate() | |
| log("interrupted; rerun the same command to resume") | |
| raise SystemExit(130) | |
| return failed | |
| def global_pass(groups, jobs_dir, out_dir, log, write): | |
| """groups: [(output file, [job, ...])] in priority order. Drops documents whose md5 key or any band | |
| key appeared in an earlier document, then keeps each job's documents in order until its target. | |
| With `write`, writes the output files. Returns {job id: report}.""" | |
| jobs = [j for _, js in groups for j in js if is_done(jobs_dir, j)] | |
| recs = [np.fromfile(paths(jobs_dir, j)["keys"], dtype=REC) for j in jobs] | |
| allr = np.concatenate(recs) if recs else np.zeros(0, REC) | |
| order = np.arange(len(allr)) | |
| dup = np.zeros(len(allr), bool) | |
| for col in [allr["x"]] + [allr["b"][:, i] for i in range(BANDS)]: | |
| _, first, inv = np.unique(col, return_index=True, return_inverse=True) | |
| dup |= first[inv.ravel()] != order | |
| avail, off = {}, 0 | |
| for j, r in zip(jobs, recs): | |
| avail[j["id"]] = int(r["w"][~dup[off:off + len(r)]].sum(dtype=np.int64)) | |
| off += len(r) | |
| # the shards of a source share its target: what one lost to duplicates, another with spare words fills | |
| budget = {} | |
| for _, js in groups: | |
| short = sum(max(0, j["target"] - avail[j["id"]]) for j in js if j["id"] in avail) | |
| for j in js: | |
| if j["id"] in avail: | |
| add = min(max(0, avail[j["id"]] - j["target"]), short) | |
| budget[j["id"]] = j["target"] + add | |
| short -= add | |
| report, masks, off = {}, {}, 0 | |
| for j, r in zip(jobs, recs): | |
| d, w = dup[off:off + len(r)], r["w"].astype(np.int64) | |
| off += len(r) | |
| keep = ~d | |
| kw = np.where(keep, w, 0) | |
| before = np.cumsum(kw) - kw | |
| trimmed = keep & (before >= budget[j["id"]]) | |
| keep &= ~trimmed | |
| masks[j["id"]] = keep | |
| report[j["id"]] = dict(docs=int(keep.sum()), words=int(w[keep].sum()), dup_docs=int(d.sum()), | |
| dup_words=int(w[d].sum()), trimmed_words=int(w[trimmed].sum())) | |
| log(f"global dedup over {len(allr)} docs: {int(dup.sum())} duplicates across jobs, " | |
| f"{sum(r['trimmed_words'] for r in report.values()) / 1e6:.2f}M words trimmed to quota") | |
| if write: | |
| wanted = {fname for fname, _ in groups} | |
| for fname, js in groups: | |
| tmp = out_dir / (fname + ".tmp") | |
| with tmp.open("wb") as dst: | |
| for j in js: | |
| if j["id"] not in masks: | |
| continue | |
| mask, n = masks[j["id"]], 0 | |
| with paths(jobs_dir, j)["jsonl"].open("rb") as src: | |
| for line in src: | |
| if n >= len(mask): | |
| break | |
| if mask[n]: | |
| dst.write(line) | |
| n += 1 | |
| if n != len(mask): | |
| raise RuntimeError(f"{j['id']}: {n} lines but {len(mask)} keys; delete its files and rerun") | |
| os.replace(tmp, out_dir / fname) | |
| # a top-up file from an earlier run that this plan no longer has would still be read by assemble.py | |
| for stale in out_dir.glob("*.jsonl"): | |
| if stale.name not in wanted: | |
| stale.replace(stale.with_suffix(".jsonl.stale")) | |
| log(f"renamed stale {stale.name} to .stale") | |
| return report | |
| def summarize(groups, jobs_dir, report): | |
| out = [] | |
| for fname, js in groups: | |
| ds = [read_json(paths(jobs_dir, j)["done"]) for j in js] | |
| ds = [d for d in ds if d] | |
| rs = [report[j["id"]] for j in js if j["id"] in report] | |
| rej = Counter() | |
| for d in ds: | |
| rej.update(d["rejections"]) | |
| out.append(dict( | |
| source=fname[:-len(".jsonl")], genre=mix.MIX[js[0]["name"]][0], | |
| target_M=round(sum(j["target"] for j in js) / 1e6, 3), | |
| words_M=round(sum(r["words"] for r in rs) / 1e6, 3), docs=sum(r["docs"] for r in rs), | |
| collected_M=round(sum(d["words_M"] for d in ds), 3), | |
| cross_job_duplicates_M=round(sum(r["dup_words"] for r in rs) / 1e6, 3), | |
| trimmed_M=round(sum(r["trimmed_words"] for r in rs) / 1e6, 3), | |
| scanned_words_M=round(sum(d["scanned_words_M"] for d in ds), 1), | |
| seconds=sum(d["seconds"] for d in ds), shards=len(js), jobs_done=len(ds), | |
| stopped=sorted({d["stopped"] for d in ds}), stream_retries=sum(d["stream_retries"] for d in ds), | |
| rejections=dict(rej.most_common()), | |
| jobs=[{k: d[k] for k in ("job", "words_M", "stopped", "relaxation", "probe")} for d in ds])) | |
| return out | |
| def main(): | |
| phys = psutil.cpu_count(logical=False) or 2 | |
| ap = argparse.ArgumentParser(description=__doc__.split("\n")[0]) | |
| ap.add_argument("size", choices=list(mix.SIZES)) | |
| ap.add_argument("--workers", type=int, default=max(1, phys // 2), | |
| help=f"parallel jobs (default half the physical cores: {max(1, phys // 2)})") | |
| ap.add_argument("--min-free-gb", type=float, default=2.0, help="start a job only above this free RAM") | |
| ap.add_argument("--kill-free-gb", type=float, default=1.0, help="stop the youngest job below this free RAM") | |
| ap.add_argument("--min-disk-gb", type=float, default=10.0, help="stop everything below this free disk") | |
| ap.add_argument("--job-hours", type=float, default=1.5, help="split sources estimated above this") | |
| ap.add_argument("--max-shards", type=int, default=6) | |
| ap.add_argument("--overshoot", type=float, default=0.03, help="extra share collected before global dedup") | |
| ap.add_argument("--ckpt-seconds", type=int, default=120) | |
| ap.add_argument("--retries", type=int, default=3, help="restarts per job after a crash") | |
| ap.add_argument("--stagger", type=int, default=20, help="seconds between job starts") | |
| ap.add_argument("--status-seconds", type=int, default=300) | |
| ap.add_argument("--scale", type=float, default=1.0, help="multiply quotas, for test runs") | |
| ap.add_argument("--only", nargs="*", default=[], help="build only these sources (no fallbacks)") | |
| ap.add_argument("--allow-failed", action="store_true", help="go on to fallbacks even if a job failed") | |
| args = ap.parse_args() | |
| size = args.size | |
| apply_scale(args.scale, size) | |
| out_dir = ROOT / "work" / (size if args.scale == 1 else f"{size}_x{args.scale:g}") | |
| jobs_dir = out_dir / "jobs" | |
| jobs_dir.mkdir(parents=True, exist_ok=True) | |
| log = Log(out_dir / "pool.log") | |
| psutil.Process().nice(psutil.BELOW_NORMAL_PRIORITY_CLASS if os.name == "nt" else 10) | |
| t0, idx = time.time(), mix.SIZES[size] | |
| names = [n for n in mix.MIX if not args.only or n in args.only] | |
| log(f"== build {size} into {out_dir} ({' '.join(sys.argv[1:])})") | |
| prim = plan_jobs([(n, mix.MIX[n][1][idx] * 1e6) for n in names], "", args, lambda n: []) | |
| shards = Counter(j["name"] for j in prim) | |
| log("plan: " + ", ".join(f"{n} x{k}" for n, k in shards.items())) | |
| failed = run_pool(prim, args, size, jobs_dir, log) | |
| if failed and not args.allow_failed: | |
| raise SystemExit(f"{len(failed)} jobs failed: {[j['id'] for j in failed]}. Rerun the same command to " | |
| "retry them, or add --allow-failed to fill their share from fallbacks.") | |
| groups = [(f"{n}.jsonl", [j for j in prim if j["name"] == n]) for n in names if shards[n]] | |
| fallback_log = [] | |
| if not args.only: | |
| report = global_pass(groups, jobs_dir, out_dir, log, write=False) | |
| got = Counter() | |
| for j in prim: | |
| got[j["name"]] += report.get(j["id"], {}).get("words", 0) | |
| plan, fallback_log = build.plan_fallbacks(size, [dict(source=n, words_M=got[n] / 1e6) for n in names]) | |
| log(f"fallback plan: {fallback_log}") | |
| topups = plan_jobs(list(plan.items()), ".topup", args, | |
| lambda n: [str(paths(jobs_dir, j)["keys"]) for j in prim if j["name"] == n]) | |
| failed = run_pool(topups, args, size, jobs_dir, log) | |
| if failed and not args.allow_failed: | |
| raise SystemExit(f"{len(failed)} top-up jobs failed: {[j['id'] for j in failed]}. Rerun to retry.") | |
| groups += [(f"{n}.topup.jsonl", [j for j in topups if j["name"] == n]) for n in plan] | |
| report = global_pass(groups, jobs_dir, out_dir, log, write=True) | |
| srcs = summarize(groups, jobs_dir, report) | |
| total = sum(s["words_M"] for s in srcs) | |
| stats = dict(total_M=round(total, 3), fallbacks=fallback_log, sources=srcs, | |
| wall_seconds=round(time.time() - t0), options=vars(args)) | |
| (out_dir / "stats.json").write_text(json.dumps(stats, indent=1)) | |
| log(f"== total {total:.2f}M words in {(time.time() - t0) / 60:.0f} min wall") | |
| if __name__ == "__main__": | |
| main() | |