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Tools for running hip-hop model based on lammps GCMD simulation, for generating MD simulation datasets (i.e. the other two datasets of mine)
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Tools for running hip-hop model based on lammps GCMD simulation, for generating MD simulation datasets (i.e. the other two datasets of mine)
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lmps-hhm.tar is the default version of running the simulation, while lammps-2Aug2023_gpu.tar is the gpu acceleration version (not fully supported)
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4.3_input_template.zip contains the example MD input files for the project
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More information about the MD simulation and the 3D genome project please refer to https://github.com/josecar24/polymer_model.git
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