THBKG / metadata.json
jspc00012567's picture
Add files using upload-large-folder tool
1a265d7 verified
Raw
History Blame Contribute Delete
13.5 kB
{
"format": "thbkg-hetero-safetensors",
"format_version": "1.0",
"reassemble_with": "load_thbkg.py:load_graph",
"training_view_is_undirected": true,
"node_types": {
"disease": {
"num_nodes": 47030,
"tensors": {
"x": {
"key": "node.disease.x",
"shape": [
47030,
256
],
"dtype": "float32"
}
}
},
"go": {
"num_nodes": 38495,
"tensors": {
"x": {
"key": "node.go.x",
"shape": [
38495,
64
],
"dtype": "float32"
}
}
},
"molecule": {
"num_nodes": 2636,
"tensors": {
"x": {
"key": "node.molecule.x",
"shape": [
2636,
1024
],
"dtype": "float32"
}
}
},
"reactome": {
"num_nodes": 2615,
"tensors": {
"x": {
"key": "node.reactome.x",
"shape": [
2615,
64
],
"dtype": "float32"
}
}
},
"target": {
"num_nodes": 19620,
"tensors": {
"x": {
"key": "node.target.x",
"shape": [
19620,
56
],
"dtype": "float32"
}
}
}
},
"edge_types": [
{
"src": "disease",
"rel": "associated_with",
"dst": "reactome",
"num_edges": 969,
"tensors": {
"edge_index": {
"key": "edge.0.edge_index",
"shape": [
2,
969
],
"dtype": "int64"
},
"edge_attr": {
"key": "edge.0.edge_attr",
"shape": [
969,
2
],
"dtype": "float32"
},
"edge_time": {
"key": "edge.0.edge_time",
"shape": [
969
],
"dtype": "int64"
}
}
},
{
"src": "disease",
"rel": "is_subtype_of",
"dst": "disease",
"num_edges": 64093,
"tensors": {
"edge_index": {
"key": "edge.1.edge_index",
"shape": [
2,
64093
],
"dtype": "int64"
},
"edge_attr": {
"key": "edge.1.edge_attr",
"shape": [
64093,
2
],
"dtype": "float32"
},
"edge_time": {
"key": "edge.1.edge_time",
"shape": [
64093
],
"dtype": "int64"
}
}
},
{
"src": "go",
"rel": "is_subtype_of",
"dst": "go",
"num_edges": 58384,
"tensors": {
"edge_index": {
"key": "edge.2.edge_index",
"shape": [
2,
58384
],
"dtype": "int64"
},
"edge_attr": {
"key": "edge.2.edge_attr",
"shape": [
58384,
2
],
"dtype": "float32"
},
"edge_time": {
"key": "edge.2.edge_time",
"shape": [
58384
],
"dtype": "int64"
}
}
},
{
"src": "molecule",
"rel": "modulated_by",
"dst": "target",
"num_edges": 75477,
"tensors": {
"edge_index": {
"key": "edge.3.edge_index",
"shape": [
2,
75477
],
"dtype": "int64"
},
"edge_attr": {
"key": "edge.3.edge_attr",
"shape": [
75477,
2
],
"dtype": "float32"
},
"edge_time": {
"key": "edge.3.edge_time",
"shape": [
75477
],
"dtype": "int64"
}
}
},
{
"src": "reactome",
"rel": "is_subpathway_of",
"dst": "reactome",
"num_edges": 2633,
"tensors": {
"edge_index": {
"key": "edge.4.edge_index",
"shape": [
2,
2633
],
"dtype": "int64"
},
"edge_attr": {
"key": "edge.4.edge_attr",
"shape": [
2633,
2
],
"dtype": "float32"
},
"edge_time": {
"key": "edge.4.edge_time",
"shape": [
2633
],
"dtype": "int64"
}
}
},
{
"src": "target",
"rel": "affected_pathway",
"dst": "disease",
"num_edges": 16570,
"tensors": {
"edge_index": {
"key": "edge.5.edge_index",
"shape": [
2,
16570
],
"dtype": "int64"
},
"edge_attr": {
"key": "edge.5.edge_attr",
"shape": [
16570,
2
],
"dtype": "float32"
},
"edge_time": {
"key": "edge.5.edge_time",
"shape": [
16570
],
"dtype": "int64"
}
}
},
{
"src": "target",
"rel": "animal_model",
"dst": "disease",
"num_edges": 711880,
"tensors": {
"edge_index": {
"key": "edge.6.edge_index",
"shape": [
2,
711880
],
"dtype": "int64"
},
"edge_attr": {
"key": "edge.6.edge_attr",
"shape": [
711880,
2
],
"dtype": "float32"
},
"edge_time": {
"key": "edge.6.edge_time",
"shape": [
711880
],
"dtype": "int64"
}
}
},
{
"src": "target",
"rel": "clinical_trial_Unknown/Operational",
"dst": "disease",
"num_edges": 35572,
"tensors": {
"edge_index": {
"key": "edge.7.edge_index",
"shape": [
2,
35572
],
"dtype": "int64"
},
"edge_attr": {
"key": "edge.7.edge_attr",
"shape": [
35572,
2
],
"dtype": "float32"
},
"edge_time": {
"key": "edge.7.edge_time",
"shape": [
35572
],
"dtype": "int64"
}
}
},
{
"src": "target",
"rel": "clinical_trial_adverse_effects",
"dst": "disease",
"num_edges": 2056,
"tensors": {
"edge_index": {
"key": "edge.8.edge_index",
"shape": [
2,
2056
],
"dtype": "int64"
},
"edge_attr": {
"key": "edge.8.edge_attr",
"shape": [
2056,
2
],
"dtype": "float32"
},
"edge_time": {
"key": "edge.8.edge_time",
"shape": [
2056
],
"dtype": "int64"
}
}
},
{
"src": "target",
"rel": "clinical_trial_ongoing",
"dst": "disease",
"num_edges": 76475,
"tensors": {
"edge_index": {
"key": "edge.9.edge_index",
"shape": [
2,
76475
],
"dtype": "int64"
},
"edge_attr": {
"key": "edge.9.edge_attr",
"shape": [
76475,
2
],
"dtype": "float32"
},
"edge_time": {
"key": "edge.9.edge_time",
"shape": [
76475
],
"dtype": "int64"
}
}
},
{
"src": "target",
"rel": "clinical_trial_positive",
"dst": "disease",
"num_edges": 53101,
"tensors": {
"edge_index": {
"key": "edge.10.edge_index",
"shape": [
2,
53101
],
"dtype": "int64"
},
"edge_attr": {
"key": "edge.10.edge_attr",
"shape": [
53101,
2
],
"dtype": "float32"
},
"edge_time": {
"key": "edge.10.edge_time",
"shape": [
53101
],
"dtype": "int64"
}
}
},
{
"src": "target",
"rel": "clinical_trial_unmet_efficacy",
"dst": "disease",
"num_edges": 4112,
"tensors": {
"edge_index": {
"key": "edge.11.edge_index",
"shape": [
2,
4112
],
"dtype": "int64"
},
"edge_attr": {
"key": "edge.11.edge_attr",
"shape": [
4112,
2
],
"dtype": "float32"
},
"edge_time": {
"key": "edge.11.edge_time",
"shape": [
4112
],
"dtype": "int64"
}
}
},
{
"src": "target",
"rel": "genetic_association",
"dst": "disease",
"num_edges": 1679195,
"tensors": {
"edge_index": {
"key": "edge.12.edge_index",
"shape": [
2,
1679195
],
"dtype": "int64"
},
"edge_attr": {
"key": "edge.12.edge_attr",
"shape": [
1679195,
2
],
"dtype": "float32"
},
"edge_time": {
"key": "edge.12.edge_time",
"shape": [
1679195
],
"dtype": "int64"
}
}
},
{
"src": "target",
"rel": "has_function_in",
"dst": "go",
"num_edges": 129649,
"tensors": {
"edge_index": {
"key": "edge.13.edge_index",
"shape": [
2,
129649
],
"dtype": "int64"
},
"edge_attr": {
"key": "edge.13.edge_attr",
"shape": [
129649,
2
],
"dtype": "float32"
},
"edge_time": {
"key": "edge.13.edge_time",
"shape": [
129649
],
"dtype": "int64"
}
}
},
{
"src": "target",
"rel": "interacts_with",
"dst": "target",
"num_edges": 659443,
"tensors": {
"edge_index": {
"key": "edge.14.edge_index",
"shape": [
2,
659443
],
"dtype": "int64"
},
"edge_attr": {
"key": "edge.14.edge_attr",
"shape": [
659443,
2
],
"dtype": "float32"
},
"edge_time": {
"key": "edge.14.edge_time",
"shape": [
659443
],
"dtype": "int64"
}
}
},
{
"src": "target",
"rel": "involved_in",
"dst": "reactome",
"num_edges": 4994,
"tensors": {
"edge_index": {
"key": "edge.15.edge_index",
"shape": [
2,
4994
],
"dtype": "int64"
},
"edge_attr": {
"key": "edge.15.edge_attr",
"shape": [
4994,
2
],
"dtype": "float32"
},
"edge_time": {
"key": "edge.15.edge_time",
"shape": [
4994
],
"dtype": "int64"
}
}
},
{
"src": "target",
"rel": "literature",
"dst": "disease",
"num_edges": 7269364,
"tensors": {
"edge_index": {
"key": "edge.16.edge_index",
"shape": [
2,
7269364
],
"dtype": "int64"
},
"edge_attr": {
"key": "edge.16.edge_attr",
"shape": [
7269364,
2
],
"dtype": "float32"
},
"edge_time": {
"key": "edge.16.edge_time",
"shape": [
7269364
],
"dtype": "int64"
}
}
},
{
"src": "target",
"rel": "rna_expression",
"dst": "disease",
"num_edges": 148704,
"tensors": {
"edge_index": {
"key": "edge.17.edge_index",
"shape": [
2,
148704
],
"dtype": "int64"
},
"edge_attr": {
"key": "edge.17.edge_attr",
"shape": [
148704,
2
],
"dtype": "float32"
},
"edge_time": {
"key": "edge.17.edge_time",
"shape": [
148704
],
"dtype": "int64"
}
}
},
{
"src": "target",
"rel": "somatic_mutation",
"dst": "disease",
"num_edges": 81193,
"tensors": {
"edge_index": {
"key": "edge.18.edge_index",
"shape": [
2,
81193
],
"dtype": "int64"
},
"edge_attr": {
"key": "edge.18.edge_attr",
"shape": [
81193,
2
],
"dtype": "float32"
},
"edge_time": {
"key": "edge.18.edge_time",
"shape": [
81193
],
"dtype": "int64"
}
}
}
],
"node_type_mapping": {
"disease": 0,
"go": 1,
"molecule": 2,
"reactome": 3,
"target": 4
}
}