annotators / data /cancer /manifest.json
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Add cancer module (ported from Generation-I dna-seq/just_cancer)
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{
"manifest_version": "1.0",
"schema_version": "1.0",
"identity": {
"namespace": null,
"name": "cancer",
"version": null,
"canonical_id": null
},
"display": {
"title": "Cancer",
"description": "Pathogenic variants in cancer-predisposition genes (ClinVar gene panel)",
"report_title": "Cancer Predisposition",
"icon": "circle-alert",
"color": "#e03997"
},
"genome_build": "GRCh38",
"curator": "just-dna-seq",
"method": "expert-curated",
"license": null,
"owner": null,
"authors": [],
"created_at": null,
"published_at": null,
"stats": {
"variant_count": 67116,
"weights_rows": 145467,
"study_count": 67116,
"gene_count": 319,
"genes": [
"ABL1",
"ACVR1B",
"AIP",
"AKT2",
"AKT3",
"ALK",
"AMER1",
"ANKRD26",
"AP5Z1",
"APC",
"AR",
"ARID1A",
"ARID2",
"ASXL1",
"ATM",
"ATR",
"ATRX",
"AURKA",
"AURKB",
"AXIN1",
"AXIN2",
"AXL",
"BAP1",
"BARD1",
"BCORL1",
"BLM",
"BMPR1A",
"BRAF",
"BRCA1",
"BRCA2",
"BRD4",
"BRIP1",
"BTK",
"BUB1B",
"CARD11",
"CBFB",
"CBL",
"CCN6",
"CCND2",
"CD70",
"CD79A",
"CDC73",
"CDH1",
"CDK12",
"CDK4",
"CDK6",
"CDK8",
"CDKN1A",
"CDKN1B",
"CDKN1C",
"CDKN2A",
"CDKN2C",
"CEBPA",
"CEP57",
"CHD2",
"CHD4",
"CHEK1",
"CHEK2",
"CSF1R",
"CTCF",
"CTNNA1",
"CTNNB1",
"CUL3",
"CYLD",
"DCLRE1C",
"DDB1",
"DDB2",
"DDR2",
"DDX41",
"DICER1",
"DIS3L2",
"DKC1",
"DMC1",
"DNMT3A",
"DOT1L",
"EGFR",
"ELANE",
"EME2",
"EP300",
"EPCAM",
"ERBB2",
"ERBB3",
"ERBB4",
"ERCC1",
"ERCC2",
"ERCC3",
"ERCC4",
"ERCC5",
"ERCC6",
"ERCC8",
"ERG",
"ESR1",
"ETV4",
"ETV6",
"EXT1",
"EZH2",
"FANCA",
"FANCB",
"FANCC",
"FANCD2",
"FANCE",
"FANCF",
"FANCG",
"FANCI",
"FANCL",
"FANCM",
"FAS",
"FAT1",
"FBXW7",
"FGF10",
"FGF14",
"FGF23",
"FGF3",
"FGF4",
"FGFR1",
"FGFR2",
"FGFR3",
"FH",
"FLCN",
"FLT3",
"FLT4",
"GATA1",
"GATA2",
"GATA3",
"GATA4",
"GATA6",
"GLI1",
"GNA11",
"GNAQ",
"GNAS",
"GPC3",
"GRIN2A",
"GSK3B",
"GTF2H5",
"H3-3A",
"HGF",
"HNF1A",
"HOXB13",
"HRAS",
"IDH1",
"IDH2",
"IGF1R",
"IGF2",
"IKZF1",
"IL7R",
"IRF4",
"JAK1",
"JAK2",
"JAK3",
"JUN",
"KAT6A",
"KDM6A",
"KDR",
"KEL",
"KIT",
"KITLG",
"KMT2A",
"KMT2C",
"KMT2D",
"KRAS",
"LIG4",
"LYN",
"LZTR1",
"MAGI2",
"MAP2K1",
"MAP2K2",
"MAP3K1",
"MAX",
"MBD4",
"MDM2",
"MED12",
"MEN1",
"MET",
"MITF",
"MLH1",
"MLH3",
"MRE11",
"MSH2",
"MSH3",
"MSH4",
"MSH5",
"MSH6",
"MTOR",
"MUS81",
"MUTYH",
"MYC",
"MYCN",
"MYD88",
"NBN",
"NEIL1",
"NF1",
"NF2",
"NFE2L2",
"NFKBIA",
"NHEJ1",
"NKX2-1",
"NOTCH1",
"NOTCH2",
"NOTCH3",
"NPM1",
"NRAS",
"NSD1",
"NSUN2",
"NTHL1",
"NTRK1",
"NTRK2",
"NUP93",
"PAK3",
"PALB2",
"PAX5",
"PBRM1",
"PDGFRA",
"PDGFRB",
"PHOX2B",
"PIK3CA",
"PIK3CB",
"PIK3CG",
"PIK3R1",
"PIK3R2",
"PKD1",
"PLCG2",
"PMS1",
"PMS2",
"PNKP",
"POLD1",
"POLE",
"POLH",
"POT1",
"PPM1D",
"PPP2R1A",
"PREX2",
"PRF1",
"PRKAR1A",
"PRKDC",
"PRKN",
"PTCH1",
"PTEN",
"PTPN11",
"RAC1",
"RAD50",
"RAD51",
"RAD51B",
"RAD51C",
"RAD51D",
"RAD54B",
"RAD54L",
"RAF1",
"RANBP2",
"RASA2",
"RBBP8",
"RHBDF2",
"RICTOR",
"RIT1",
"RNF43",
"ROS1",
"RPA1",
"RRAS",
"RUNX1",
"RUNX1T1",
"SAMD9L",
"SBDS",
"SDHA",
"SDHAF2",
"SDHB",
"SDHC",
"SDHD",
"SETD2",
"SHOC2",
"SLIT2",
"SLX4",
"SMAD2",
"SMAD3",
"SMAD4",
"SMARCA4",
"SMARCB1",
"SMO",
"SOCS1",
"SOS1",
"SOS2",
"SOX10",
"SOX2",
"SOX9",
"SPEN",
"SPOP",
"SPRED1",
"SPTA1",
"SRC",
"STAG2",
"STAT3",
"STAT4",
"STK11",
"SUFU",
"SYK",
"TAF1",
"TBX3",
"TERC",
"TERT",
"TET2",
"TGFBR2",
"TINF2",
"TMEM127",
"TNFAIP3",
"TOP1",
"TP53",
"TSC1",
"TSC2",
"TSHR",
"U2AF1",
"UNG",
"VEGFA",
"VHL",
"WRN",
"WT1",
"XPA",
"XPC",
"XPO1",
"XRCC1",
"XRCC2",
"XRCC4"
],
"categories": []
},
"compilation": {
"compile_success": true,
"compiled_by": null,
"compiler_version": "just-dna-compiler 0.1.0",
"ensembl_reference": null,
"compiled_at": "2026-07-07T02:35:15Z",
"warnings": []
},
"inputs": [
{
"name": "module_spec.yaml",
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"logs": [
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}