Add lipidmetabolism module (ported from Generation-I dna-seq/just_lipidmetabolism)
Browse files- data/lipidmetabolism/annotations.parquet +2 -2
- data/lipidmetabolism/literature.parquet +3 -0
- data/lipidmetabolism/logo.png +3 -0
- data/lipidmetabolism/manifest.json +97 -24
- data/lipidmetabolism/sources.parquet +3 -0
- data/lipidmetabolism/studies.parquet +2 -2
- data/lipidmetabolism/weights.parquet +2 -2
data/lipidmetabolism/annotations.parquet
CHANGED
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@@ -1,3 +1,3 @@
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version https://git-lfs.github.com/spec/v1
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size
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version https://git-lfs.github.com/spec/v1
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data/lipidmetabolism/literature.parquet
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version https://git-lfs.github.com/spec/v1
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oid sha256:5b90b0096dfc32bbf896e5776f809ef66ac82e5f8d0fea899f2fe4f69a5556b0
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size 5444
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data/lipidmetabolism/logo.png
ADDED
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Git LFS Details
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data/lipidmetabolism/manifest.json
CHANGED
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@@ -12,6 +12,7 @@
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"description": "Lipid metabolism and cardiovascular risk variants",
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"report_title": "Lipid Metabolism",
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"icon": "droplets",
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"color": "#fbbd08"
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},
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"genome_build": "GRCh38",
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@@ -20,16 +21,16 @@
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"license": null,
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"owner": null,
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"authors": [],
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"created_at": null,
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"published_at": null,
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"stats": {
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"variant_count": 15,
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"weights_rows": 45,
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"study_count":
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"gene_count":
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"genes": [
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"ABCG8",
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"ABCG8, ABCG5",
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"APOB",
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"APOC3",
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"APOE",
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@@ -42,60 +43,132 @@
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"RAB11B",
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"TTC39B"
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],
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"categories": []
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"compilation": {
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"compile_success": true,
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"compiled_by": null,
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"compiler_version": "just-dna-compiler 0.
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"ensembl_reference": null,
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"compiled_at": "2026-
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"warnings": [
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"
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},
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"inputs": [
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{
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"name": "module_spec.yaml",
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"sha256": "sha256:
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"size":
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{
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"name": "variants.csv",
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"sha256": "sha256:
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"size":
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{
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"name": "studies.csv",
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"sha256": "sha256:
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"size":
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"artifact": {
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"digest": "sha256:
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"files": [
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{
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"name": "weights.parquet",
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"sha256": "sha256:
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"size":
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{
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"name": "annotations.parquet",
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"sha256": "sha256:
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"size":
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{
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"name": "studies.parquet",
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"sha256": "sha256:
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"size":
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},
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"logs": [
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{
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"name": "v1_port.log",
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"sha256": "sha256:
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"size":
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}
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"description": "Lipid metabolism and cardiovascular risk variants",
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"report_title": "Lipid Metabolism",
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"icon": "droplets",
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+
"icon_set": "fomantic",
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"color": "#fbbd08"
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},
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"genome_build": "GRCh38",
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"license": null,
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| 22 |
"owner": null,
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"authors": [],
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+
"authorship": [],
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"created_at": null,
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"published_at": null,
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"stats": {
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"variant_count": 15,
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"weights_rows": 45,
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+
"study_count": 41,
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| 31 |
+
"gene_count": 12,
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"genes": [
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"ABCG8",
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"APOB",
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| 35 |
"APOC3",
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"APOE",
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"RAB11B",
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| 44 |
"TTC39B"
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],
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+
"categories": [],
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"clinvar_count": 0,
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"pathogenic_count": 0,
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"benign_count": 0
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},
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"compilation": {
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"compile_success": true,
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"compiled_by": null,
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"compiler_version": "just-dna-compiler 0.5.1",
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"ensembl_reference": null,
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| 56 |
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"compiled_at": "2026-08-09T17:53:12Z",
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"warnings": [
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"literature.csv describes 1 citation(s) no study in this module cites: ['20686565']",
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"sources.csv has no row for 1 source(s) the module's fact tables cite: ['pubmed'] — their terms are unrecorded."
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],
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"resolution_mode": "best_effort",
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"fully_resolved": true,
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"cache"
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],
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"vrs_alleles": 24,
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"vrs_alleles_identified": 24
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},
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"frequency": null,
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"gene_metrics": null,
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"literature": {
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"signature": "sha256:ac0ae66ad4ae894921aa92f7d870c520ac89288b1d7488335e2c4aeea54da694",
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"sources": [
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"pubmed"
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"row_count": 36,
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"resolved_count": 36,
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"missing_count": 0,
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"open_access_count": 19,
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"sources": {
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"sources": [
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"ensembl"
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"layers": [
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"resolution"
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"licenses": [
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"Apache-2.0"
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],
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"attributions": [
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"Ensembl (https://www.ensembl.org)"
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],
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"notices": [],
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"share_alike_layers": [],
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"unstated"
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"commercial_use": true,
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"name": "studies.parquet",
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data/lipidmetabolism/sources.parquet
ADDED
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version https://git-lfs.github.com/spec/v1
|
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+
oid sha256:ee176b174a6f6c6387acdf427c1aec0e2e3bf3cb31e914bc280f98a3333f849e
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+
size 5461
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data/lipidmetabolism/studies.parquet
CHANGED
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@@ -1,3 +1,3 @@
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version https://git-lfs.github.com/spec/v1
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-
oid sha256:
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-
size
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version https://git-lfs.github.com/spec/v1
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+
oid sha256:4edb5f1aba0def589f685277a597c32bd975038a2701b1e8b56d225ec8f07e09
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+
size 6457
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data/lipidmetabolism/weights.parquet
CHANGED
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@@ -1,3 +1,3 @@
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version https://git-lfs.github.com/spec/v1
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-
oid sha256:
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| 3 |
-
size
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| 1 |
version https://git-lfs.github.com/spec/v1
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+
oid sha256:0523b88c6de153274ef12b28370e5acda2d6217efbc6205bddbbdcdde20f62d3
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size 15071
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