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Browse filesThis view is limited to 50 files because it contains too many changes. See raw diff
- cdr_info/8qf5_G__H_cdr_info.json +92 -0
- cdr_info/8qot_B__A_cdr_info.json +102 -0
- cdr_info/8qq0_E_D_A_cdr_info.json +187 -0
- cdr_info/8qz6_B__A_cdr_info.json +108 -0
- cdr_info/8r1c_H_L_A_cdr_info.json +191 -0
- cdr_info/8r4d_B__A_cdr_info.json +104 -0
- cdr_info/8r80_H_L_R_cdr_info.json +173 -0
- cdr_info/8r8k_H_L_A_cdr_info.json +191 -0
- cdr_info/8r9y_B_C_A_cdr_info.json +181 -0
- cdr_info/8r9y_H_L_A_cdr_info.json +177 -0
- cdr_info/8rz1_A_a_B_cdr_info.json +175 -0
- cdr_info/8s61_B__A_cdr_info.json +102 -0
- cdr_info/8scx_H_L_C_cdr_info.json +177 -0
- cdr_info/8sfx_D__B_cdr_info.json +98 -0
- cdr_info/8sgt_H_L_A_cdr_info.json +183 -0
- cdr_info/8sic_A_B_E_cdr_info.json +187 -0
- cdr_info/8smk_B_C_A_cdr_info.json +181 -0
- cdr_info/8sne_C__A_cdr_info.json +100 -0
- cdr_info/8so3_Y_Z_X_cdr_info.json +181 -0
- cdr_info/8sr0_Y_Z_X_cdr_info.json +181 -0
- cdr_info/8t03_C_D_A_cdr_info.json +175 -0
- cdr_info/8t04_C_D_A_cdr_info.json +175 -0
- cdr_info/8tfn_H_L_B_cdr_info.json +173 -0
- cdr_info/8tg9_H_L_A_cdr_info.json +181 -0
- cdr_info/8tga_E_F_B_cdr_info.json +181 -0
- cdr_info/8tkc_G_H_AB_cdr_info.json +201 -0
- cdr_info/8tnj_D_C_A_cdr_info.json +181 -0
- cdr_info/8to9_D_F_A_cdr_info.json +189 -0
- cdr_info/8tp4_H_L_C_cdr_info.json +207 -0
- cdr_info/8tp5_E_F_C_cdr_info.json +207 -0
- cdr_info/8tq7_F_G_C_cdr_info.json +169 -0
- cdr_info/8tqi_H_L_B_cdr_info.json +175 -0
- cdr_info/8tv1_D_E_C_cdr_info.json +193 -0
- cdr_info/8tvd_H_L_E_cdr_info.json +177 -0
- cdr_info/8tvj_H_L_E_cdr_info.json +187 -0
- cdr_info/8txm_H_L_AB_cdr_info.json +189 -0
- cdr_info/8txp_H_L_AB_cdr_info.json +189 -0
- cdr_info/8ty1_C_B_A_cdr_info.json +213 -0
- cdr_info/8u1c_H_L_A_cdr_info.json +193 -0
- cdr_info/8u1q_H_L_A_cdr_info.json +175 -0
- cdr_info/8u44_V_X_AB_cdr_info.json +187 -0
- cdr_info/8ukh_H_L_A_cdr_info.json +167 -0
- cdr_info/8uky_H_L_C_cdr_info.json +169 -0
- cdr_info/8ulj_H_L_AB_cdr_info.json +189 -0
- cdr_info/8uoa_B__A_cdr_info.json +94 -0
- cdr_info/8v4f_B_D_A_cdr_info.json +171 -0
- cdr_info/8v7o_H_L_A_cdr_info.json +189 -0
- cdr_info/8vdf_H_L_A_cdr_info.json +193 -0
- cdr_info/8vk1_F_E_D_cdr_info.json +181 -0
- cdr_info/8vuh_H_L_A_cdr_info.json +179 -0
cdr_info/8qf5_G__H_cdr_info.json
ADDED
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| 1 |
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{
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| 2 |
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"entry_name": "8qf5_G__H",
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| 3 |
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"heavy_chain_id": "G",
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| 4 |
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"light_chain_id": null,
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| 5 |
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"chain_mapping": {
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| 6 |
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"protenix_to_original": {
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| 7 |
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"A": "G",
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| 8 |
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"B": "H"
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},
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| 10 |
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"original_to_protenix": {
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| 11 |
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"G": "A",
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| 12 |
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"H": "B"
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| 13 |
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},
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| 14 |
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"sequence_order": [
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{
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| 16 |
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"protenix_chain": "A",
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| 17 |
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"original_chain": "G",
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| 18 |
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"seq_len": 120,
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| 19 |
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"entity_type": "proteinChain"
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| 20 |
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},
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| 21 |
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{
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| 22 |
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"protenix_chain": "B",
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| 23 |
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"original_chain": "H",
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| 24 |
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"seq_len": 75,
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| 25 |
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"entity_type": "proteinChain"
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| 26 |
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}
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| 27 |
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]
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| 28 |
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},
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| 29 |
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"cdr_info": {
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"H_chain": {
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| 31 |
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"cdr_indices": [
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| 32 |
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25,
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27,
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],
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| 55 |
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"variable_domain_start_res_id": 3,
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| 56 |
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"cdr1": {
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| 57 |
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"indices": [
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| 58 |
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25,
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26,
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]
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},
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"cdr2": {
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"indices": [
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]
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},
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"cdr3": {
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"indices": [
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97,
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}
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}
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}
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| 92 |
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}
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cdr_info/8qot_B__A_cdr_info.json
ADDED
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@@ -0,0 +1,102 @@
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| 1 |
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{
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| 2 |
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"entry_name": "8qot_B__A",
|
| 3 |
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"heavy_chain_id": "B",
|
| 4 |
+
"light_chain_id": null,
|
| 5 |
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"chain_mapping": {
|
| 6 |
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"protenix_to_original": {
|
| 7 |
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"A": "A",
|
| 8 |
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"B": "B"
|
| 9 |
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},
|
| 10 |
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"original_to_protenix": {
|
| 11 |
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"A": "A",
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| 12 |
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"B": "B"
|
| 13 |
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},
|
| 14 |
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"sequence_order": [
|
| 15 |
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{
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| 16 |
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"protenix_chain": "A",
|
| 17 |
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"original_chain": "A",
|
| 18 |
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"seq_len": 482,
|
| 19 |
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"entity_type": "proteinChain"
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| 20 |
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},
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| 21 |
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{
|
| 22 |
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"protenix_chain": "B",
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| 23 |
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"original_chain": "B",
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| 24 |
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"seq_len": 171,
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| 25 |
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"entity_type": "proteinChain"
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}
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| 27 |
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]
|
| 28 |
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},
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| 29 |
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"cdr_info": {
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| 30 |
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"H_chain": {
|
| 31 |
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"cdr_indices": [
|
| 32 |
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25,
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| 33 |
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26,
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| 34 |
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27,
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| 35 |
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28,
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29,
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51,
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52,
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97,
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+
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+
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],
|
| 60 |
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"variable_domain_start_res_id": 23,
|
| 61 |
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"cdr1": {
|
| 62 |
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"indices": [
|
| 63 |
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25,
|
| 64 |
+
26,
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| 65 |
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27,
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|
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]
|
| 71 |
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},
|
| 72 |
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"cdr2": {
|
| 73 |
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"indices": [
|
| 74 |
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51,
|
| 75 |
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52,
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| 76 |
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53,
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54,
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]
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| 80 |
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},
|
| 81 |
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"cdr3": {
|
| 82 |
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"indices": [
|
| 83 |
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97,
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| 84 |
+
98,
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| 85 |
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]
|
| 99 |
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}
|
| 100 |
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}
|
| 101 |
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}
|
| 102 |
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}
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cdr_info/8qq0_E_D_A_cdr_info.json
ADDED
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|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"entry_name": "8qq0_E_D_A",
|
| 3 |
+
"heavy_chain_id": "E",
|
| 4 |
+
"light_chain_id": "D",
|
| 5 |
+
"chain_mapping": {
|
| 6 |
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"protenix_to_original": {
|
| 7 |
+
"A": "A",
|
| 8 |
+
"B": "D",
|
| 9 |
+
"C": "E"
|
| 10 |
+
},
|
| 11 |
+
"original_to_protenix": {
|
| 12 |
+
"A": "A",
|
| 13 |
+
"D": "B",
|
| 14 |
+
"E": "C"
|
| 15 |
+
},
|
| 16 |
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|
| 17 |
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{
|
| 18 |
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"protenix_chain": "A",
|
| 19 |
+
"original_chain": "A",
|
| 20 |
+
"seq_len": 1288,
|
| 21 |
+
"entity_type": "proteinChain"
|
| 22 |
+
},
|
| 23 |
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{
|
| 24 |
+
"protenix_chain": "B",
|
| 25 |
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|
| 26 |
+
"seq_len": 216,
|
| 27 |
+
"entity_type": "proteinChain"
|
| 28 |
+
},
|
| 29 |
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{
|
| 30 |
+
"protenix_chain": "C",
|
| 31 |
+
"original_chain": "E",
|
| 32 |
+
"seq_len": 229,
|
| 33 |
+
"entity_type": "proteinChain"
|
| 34 |
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}
|
| 35 |
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]
|
| 36 |
+
},
|
| 37 |
+
"cdr_info": {
|
| 38 |
+
"H_chain": {
|
| 39 |
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|
| 40 |
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|
| 41 |
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|
| 42 |
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|
| 43 |
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|
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|
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|
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|
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| 48 |
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|
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|
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|
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|
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|
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|
| 55 |
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|
| 56 |
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|
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|
| 58 |
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|
| 59 |
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|
| 60 |
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|
| 61 |
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|
| 62 |
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|
| 63 |
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108,
|
| 64 |
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|
| 65 |
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|
| 66 |
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|
| 67 |
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"variable_domain_start_res_id": 1,
|
| 68 |
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|
| 69 |
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|
| 70 |
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|
| 71 |
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|
| 72 |
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|
| 73 |
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|
| 74 |
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|
| 75 |
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|
| 76 |
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|
| 77 |
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|
| 78 |
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|
| 79 |
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|
| 80 |
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|
| 81 |
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|
| 82 |
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|
| 83 |
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|
| 84 |
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|
| 85 |
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|
| 86 |
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|
| 87 |
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|
| 88 |
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|
| 89 |
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|
| 90 |
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|
| 91 |
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|
| 92 |
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|
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|
| 94 |
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|
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|
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|
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|
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|
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|
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|
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|
| 102 |
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|
| 103 |
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|
| 104 |
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|
| 105 |
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}
|
| 106 |
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|
| 107 |
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|
| 108 |
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|
| 109 |
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|
| 110 |
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
| 127 |
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|
| 128 |
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|
| 129 |
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|
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|
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|
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|
| 133 |
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|
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|
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|
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|
| 137 |
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|
| 138 |
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|
| 139 |
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|
| 140 |
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|
| 141 |
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|
| 142 |
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|
| 143 |
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|
| 144 |
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|
| 145 |
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|
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|
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|
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|
| 149 |
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|
| 150 |
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|
| 151 |
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|
| 152 |
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|
| 153 |
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|
| 154 |
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|
| 155 |
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|
| 156 |
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|
| 157 |
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|
| 158 |
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|
| 159 |
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|
| 160 |
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|
| 161 |
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|
| 162 |
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|
| 163 |
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|
| 164 |
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|
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|
| 166 |
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|
| 167 |
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|
| 168 |
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|
| 169 |
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|
| 170 |
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|
| 171 |
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"cdr3": {
|
| 172 |
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|
| 173 |
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|
| 174 |
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|
| 175 |
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|
| 176 |
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|
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|
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|
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|
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|
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|
| 182 |
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|
| 183 |
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|
| 184 |
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}
|
| 185 |
+
}
|
| 186 |
+
}
|
| 187 |
+
}
|
cdr_info/8qz6_B__A_cdr_info.json
ADDED
|
@@ -0,0 +1,108 @@
|
|
|
|
|
|
|
|
|
|
|
|
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|
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|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"entry_name": "8qz6_B__A",
|
| 3 |
+
"heavy_chain_id": "B",
|
| 4 |
+
"light_chain_id": null,
|
| 5 |
+
"chain_mapping": {
|
| 6 |
+
"protenix_to_original": {
|
| 7 |
+
"A": "A",
|
| 8 |
+
"B": "B"
|
| 9 |
+
},
|
| 10 |
+
"original_to_protenix": {
|
| 11 |
+
"A": "A",
|
| 12 |
+
"B": "B"
|
| 13 |
+
},
|
| 14 |
+
"sequence_order": [
|
| 15 |
+
{
|
| 16 |
+
"protenix_chain": "A",
|
| 17 |
+
"original_chain": "A",
|
| 18 |
+
"seq_len": 357,
|
| 19 |
+
"entity_type": "proteinChain"
|
| 20 |
+
},
|
| 21 |
+
{
|
| 22 |
+
"protenix_chain": "B",
|
| 23 |
+
"original_chain": "B",
|
| 24 |
+
"seq_len": 136,
|
| 25 |
+
"entity_type": "proteinChain"
|
| 26 |
+
}
|
| 27 |
+
]
|
| 28 |
+
},
|
| 29 |
+
"cdr_info": {
|
| 30 |
+
"H_chain": {
|
| 31 |
+
"cdr_indices": [
|
| 32 |
+
25,
|
| 33 |
+
26,
|
| 34 |
+
27,
|
| 35 |
+
28,
|
| 36 |
+
29,
|
| 37 |
+
30,
|
| 38 |
+
31,
|
| 39 |
+
51,
|
| 40 |
+
52,
|
| 41 |
+
53,
|
| 42 |
+
54,
|
| 43 |
+
55,
|
| 44 |
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56,
|
| 45 |
+
98,
|
| 46 |
+
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|
| 47 |
+
100,
|
| 48 |
+
101,
|
| 49 |
+
102,
|
| 50 |
+
103,
|
| 51 |
+
104,
|
| 52 |
+
105,
|
| 53 |
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106,
|
| 54 |
+
107,
|
| 55 |
+
108,
|
| 56 |
+
109,
|
| 57 |
+
110,
|
| 58 |
+
111,
|
| 59 |
+
112,
|
| 60 |
+
113,
|
| 61 |
+
114
|
| 62 |
+
],
|
| 63 |
+
"variable_domain_start_res_id": 1,
|
| 64 |
+
"cdr1": {
|
| 65 |
+
"indices": [
|
| 66 |
+
25,
|
| 67 |
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26,
|
| 68 |
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27,
|
| 69 |
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28,
|
| 70 |
+
29,
|
| 71 |
+
30,
|
| 72 |
+
31
|
| 73 |
+
]
|
| 74 |
+
},
|
| 75 |
+
"cdr2": {
|
| 76 |
+
"indices": [
|
| 77 |
+
51,
|
| 78 |
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52,
|
| 79 |
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53,
|
| 80 |
+
54,
|
| 81 |
+
55,
|
| 82 |
+
56
|
| 83 |
+
]
|
| 84 |
+
},
|
| 85 |
+
"cdr3": {
|
| 86 |
+
"indices": [
|
| 87 |
+
98,
|
| 88 |
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99,
|
| 89 |
+
100,
|
| 90 |
+
101,
|
| 91 |
+
102,
|
| 92 |
+
103,
|
| 93 |
+
104,
|
| 94 |
+
105,
|
| 95 |
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|
| 96 |
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|
| 97 |
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108,
|
| 98 |
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|
| 99 |
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110,
|
| 100 |
+
111,
|
| 101 |
+
112,
|
| 102 |
+
113,
|
| 103 |
+
114
|
| 104 |
+
]
|
| 105 |
+
}
|
| 106 |
+
}
|
| 107 |
+
}
|
| 108 |
+
}
|
cdr_info/8r1c_H_L_A_cdr_info.json
ADDED
|
@@ -0,0 +1,191 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
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|
|
|
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|
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|
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|
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|
|
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|
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|
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|
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|
|
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|
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|
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|
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|
|
|
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|
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|
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|
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|
|
|
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|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"entry_name": "8r1c_H_L_A",
|
| 3 |
+
"heavy_chain_id": "H",
|
| 4 |
+
"light_chain_id": "L",
|
| 5 |
+
"chain_mapping": {
|
| 6 |
+
"protenix_to_original": {
|
| 7 |
+
"A": "A",
|
| 8 |
+
"B": "H",
|
| 9 |
+
"C": "L"
|
| 10 |
+
},
|
| 11 |
+
"original_to_protenix": {
|
| 12 |
+
"A": "A",
|
| 13 |
+
"H": "B",
|
| 14 |
+
"L": "C"
|
| 15 |
+
},
|
| 16 |
+
"sequence_order": [
|
| 17 |
+
{
|
| 18 |
+
"protenix_chain": "A",
|
| 19 |
+
"original_chain": "A",
|
| 20 |
+
"seq_len": 1285,
|
| 21 |
+
"entity_type": "proteinChain"
|
| 22 |
+
},
|
| 23 |
+
{
|
| 24 |
+
"protenix_chain": "B",
|
| 25 |
+
"original_chain": "H",
|
| 26 |
+
"seq_len": 124,
|
| 27 |
+
"entity_type": "proteinChain"
|
| 28 |
+
},
|
| 29 |
+
{
|
| 30 |
+
"protenix_chain": "C",
|
| 31 |
+
"original_chain": "L",
|
| 32 |
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|
| 33 |
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"entity_type": "proteinChain"
|
| 34 |
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}
|
| 35 |
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]
|
| 36 |
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},
|
| 37 |
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|
| 38 |
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|
| 39 |
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|
| 40 |
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|
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|
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|
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|
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|
| 68 |
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|
| 69 |
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|
| 70 |
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|
| 71 |
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|
| 72 |
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| 73 |
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|
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|
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|
| 84 |
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|
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|
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|
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|
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|
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|
| 112 |
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|
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|
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|
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|
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|
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|
| 146 |
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|
| 147 |
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|
| 148 |
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|
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|
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|
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|
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|
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|
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|
| 163 |
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|
| 164 |
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|
| 165 |
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|
| 166 |
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|
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|
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|
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|
| 172 |
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|
| 173 |
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|
| 174 |
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|
| 175 |
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|
| 176 |
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|
| 177 |
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|
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|
| 187 |
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|
| 188 |
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}
|
| 189 |
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}
|
| 190 |
+
}
|
| 191 |
+
}
|
cdr_info/8r4d_B__A_cdr_info.json
ADDED
|
@@ -0,0 +1,104 @@
|
|
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|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
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|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
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|
|
|
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|
|
|
|
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|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
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|
|
|
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|
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|
|
|
|
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|
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|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
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|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"entry_name": "8r4d_B__A",
|
| 3 |
+
"heavy_chain_id": "B",
|
| 4 |
+
"light_chain_id": null,
|
| 5 |
+
"chain_mapping": {
|
| 6 |
+
"protenix_to_original": {
|
| 7 |
+
"A": "A",
|
| 8 |
+
"B": "B"
|
| 9 |
+
},
|
| 10 |
+
"original_to_protenix": {
|
| 11 |
+
"A": "A",
|
| 12 |
+
"B": "B"
|
| 13 |
+
},
|
| 14 |
+
"sequence_order": [
|
| 15 |
+
{
|
| 16 |
+
"protenix_chain": "A",
|
| 17 |
+
"original_chain": "A",
|
| 18 |
+
"seq_len": 1107,
|
| 19 |
+
"entity_type": "proteinChain"
|
| 20 |
+
},
|
| 21 |
+
{
|
| 22 |
+
"protenix_chain": "B",
|
| 23 |
+
"original_chain": "B",
|
| 24 |
+
"seq_len": 137,
|
| 25 |
+
"entity_type": "proteinChain"
|
| 26 |
+
}
|
| 27 |
+
]
|
| 28 |
+
},
|
| 29 |
+
"cdr_info": {
|
| 30 |
+
"H_chain": {
|
| 31 |
+
"cdr_indices": [
|
| 32 |
+
25,
|
| 33 |
+
26,
|
| 34 |
+
27,
|
| 35 |
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28,
|
| 36 |
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|
| 37 |
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|
| 38 |
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|
| 39 |
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|
| 40 |
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|
| 41 |
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|
| 42 |
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|
| 43 |
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|
| 44 |
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|
| 45 |
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|
| 46 |
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|
| 47 |
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|
| 48 |
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|
| 49 |
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|
| 50 |
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|
| 51 |
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|
| 52 |
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|
| 53 |
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|
| 54 |
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|
| 55 |
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|
| 56 |
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112,
|
| 57 |
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113,
|
| 58 |
+
114,
|
| 59 |
+
115
|
| 60 |
+
],
|
| 61 |
+
"variable_domain_start_res_id": 1,
|
| 62 |
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|
| 63 |
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|
| 64 |
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25,
|
| 65 |
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26,
|
| 66 |
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|
| 67 |
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28,
|
| 68 |
+
29,
|
| 69 |
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30,
|
| 70 |
+
31
|
| 71 |
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]
|
| 72 |
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},
|
| 73 |
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"cdr2": {
|
| 74 |
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|
| 75 |
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|
| 76 |
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|
| 77 |
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|
| 78 |
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|
| 79 |
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|
| 80 |
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|
| 81 |
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]
|
| 82 |
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},
|
| 83 |
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"cdr3": {
|
| 84 |
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|
| 85 |
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|
| 86 |
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|
| 87 |
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|
| 88 |
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|
| 89 |
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|
| 90 |
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|
| 91 |
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|
| 92 |
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|
| 93 |
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|
| 94 |
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|
| 95 |
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|
| 96 |
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|
| 97 |
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|
| 98 |
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|
| 99 |
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115
|
| 100 |
+
]
|
| 101 |
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}
|
| 102 |
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}
|
| 103 |
+
}
|
| 104 |
+
}
|
cdr_info/8r80_H_L_R_cdr_info.json
ADDED
|
@@ -0,0 +1,173 @@
|
|
|
|
|
|
|
|
|
|
|
|
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|
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|
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|
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|
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|
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|
|
|
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|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"entry_name": "8r80_H_L_R",
|
| 3 |
+
"heavy_chain_id": "H",
|
| 4 |
+
"light_chain_id": "L",
|
| 5 |
+
"chain_mapping": {
|
| 6 |
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"protenix_to_original": {
|
| 7 |
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"A": "H",
|
| 8 |
+
"B": "L",
|
| 9 |
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"C": "R"
|
| 10 |
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},
|
| 11 |
+
"original_to_protenix": {
|
| 12 |
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"H": "A",
|
| 13 |
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"L": "B",
|
| 14 |
+
"R": "C"
|
| 15 |
+
},
|
| 16 |
+
"sequence_order": [
|
| 17 |
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{
|
| 18 |
+
"protenix_chain": "A",
|
| 19 |
+
"original_chain": "H",
|
| 20 |
+
"seq_len": 224,
|
| 21 |
+
"entity_type": "proteinChain"
|
| 22 |
+
},
|
| 23 |
+
{
|
| 24 |
+
"protenix_chain": "B",
|
| 25 |
+
"original_chain": "L",
|
| 26 |
+
"seq_len": 214,
|
| 27 |
+
"entity_type": "proteinChain"
|
| 28 |
+
},
|
| 29 |
+
{
|
| 30 |
+
"protenix_chain": "C",
|
| 31 |
+
"original_chain": "R",
|
| 32 |
+
"seq_len": 202,
|
| 33 |
+
"entity_type": "proteinChain"
|
| 34 |
+
}
|
| 35 |
+
]
|
| 36 |
+
},
|
| 37 |
+
"cdr_info": {
|
| 38 |
+
"H_chain": {
|
| 39 |
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|
| 40 |
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|
| 41 |
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26,
|
| 42 |
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|
| 43 |
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|
| 44 |
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|
| 45 |
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|
| 46 |
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|
| 47 |
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|
| 48 |
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|
| 49 |
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53,
|
| 50 |
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54,
|
| 51 |
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55,
|
| 52 |
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97,
|
| 53 |
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98,
|
| 54 |
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99,
|
| 55 |
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100,
|
| 56 |
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101,
|
| 57 |
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102,
|
| 58 |
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103,
|
| 59 |
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104,
|
| 60 |
+
105,
|
| 61 |
+
106,
|
| 62 |
+
107
|
| 63 |
+
],
|
| 64 |
+
"variable_domain_start_res_id": 1,
|
| 65 |
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"cdr1": {
|
| 66 |
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"indices": [
|
| 67 |
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25,
|
| 68 |
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26,
|
| 69 |
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27,
|
| 70 |
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28,
|
| 71 |
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29,
|
| 72 |
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30,
|
| 73 |
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31
|
| 74 |
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]
|
| 75 |
+
},
|
| 76 |
+
"cdr2": {
|
| 77 |
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"indices": [
|
| 78 |
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51,
|
| 79 |
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52,
|
| 80 |
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53,
|
| 81 |
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54,
|
| 82 |
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55
|
| 83 |
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]
|
| 84 |
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},
|
| 85 |
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"cdr3": {
|
| 86 |
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"indices": [
|
| 87 |
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|
| 88 |
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|
| 89 |
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|
| 90 |
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|
| 91 |
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|
| 92 |
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|
| 93 |
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|
| 94 |
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|
| 95 |
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|
| 96 |
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|
| 97 |
+
107
|
| 98 |
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|
| 99 |
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}
|
| 100 |
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},
|
| 101 |
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"L_chain": {
|
| 102 |
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"cdr_indices": [
|
| 103 |
+
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|
| 104 |
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|
| 105 |
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|
| 106 |
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|
| 107 |
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|
| 108 |
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|
| 109 |
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|
| 110 |
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|
| 111 |
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|
| 112 |
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|
| 113 |
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|
| 114 |
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|
| 115 |
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|
| 116 |
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|
| 117 |
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|
| 118 |
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|
| 119 |
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|
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|
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|
| 122 |
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|
| 123 |
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|
| 124 |
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|
| 125 |
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|
| 126 |
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|
| 127 |
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|
| 128 |
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|
| 129 |
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|
| 130 |
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|
| 131 |
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"variable_domain_start_res_id": 1,
|
| 132 |
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|
| 133 |
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"indices": [
|
| 134 |
+
23,
|
| 135 |
+
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|
| 136 |
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|
| 137 |
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|
| 138 |
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|
| 139 |
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|
| 140 |
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|
| 141 |
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|
| 142 |
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|
| 143 |
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|
| 144 |
+
33
|
| 145 |
+
]
|
| 146 |
+
},
|
| 147 |
+
"cdr2": {
|
| 148 |
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"indices": [
|
| 149 |
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|
| 150 |
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|
| 151 |
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|
| 152 |
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|
| 153 |
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|
| 154 |
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|
| 155 |
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|
| 156 |
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|
| 157 |
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|
| 158 |
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|
| 159 |
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|
| 160 |
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|
| 161 |
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|
| 162 |
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|
| 163 |
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|
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|
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|
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|
| 167 |
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|
| 168 |
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|
| 169 |
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|
| 170 |
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}
|
| 171 |
+
}
|
| 172 |
+
}
|
| 173 |
+
}
|
cdr_info/8r8k_H_L_A_cdr_info.json
ADDED
|
@@ -0,0 +1,191 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
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|
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|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"entry_name": "8r8k_H_L_A",
|
| 3 |
+
"heavy_chain_id": "H",
|
| 4 |
+
"light_chain_id": "L",
|
| 5 |
+
"chain_mapping": {
|
| 6 |
+
"protenix_to_original": {
|
| 7 |
+
"A": "A",
|
| 8 |
+
"B": "H",
|
| 9 |
+
"C": "L"
|
| 10 |
+
},
|
| 11 |
+
"original_to_protenix": {
|
| 12 |
+
"A": "A",
|
| 13 |
+
"H": "B",
|
| 14 |
+
"L": "C"
|
| 15 |
+
},
|
| 16 |
+
"sequence_order": [
|
| 17 |
+
{
|
| 18 |
+
"protenix_chain": "A",
|
| 19 |
+
"original_chain": "A",
|
| 20 |
+
"seq_len": 1285,
|
| 21 |
+
"entity_type": "proteinChain"
|
| 22 |
+
},
|
| 23 |
+
{
|
| 24 |
+
"protenix_chain": "B",
|
| 25 |
+
"original_chain": "H",
|
| 26 |
+
"seq_len": 233,
|
| 27 |
+
"entity_type": "proteinChain"
|
| 28 |
+
},
|
| 29 |
+
{
|
| 30 |
+
"protenix_chain": "C",
|
| 31 |
+
"original_chain": "L",
|
| 32 |
+
"seq_len": 214,
|
| 33 |
+
"entity_type": "proteinChain"
|
| 34 |
+
}
|
| 35 |
+
]
|
| 36 |
+
},
|
| 37 |
+
"cdr_info": {
|
| 38 |
+
"H_chain": {
|
| 39 |
+
"cdr_indices": [
|
| 40 |
+
25,
|
| 41 |
+
26,
|
| 42 |
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27,
|
| 43 |
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|
| 44 |
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|
| 45 |
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|
| 46 |
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|
| 47 |
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|
| 48 |
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|
| 49 |
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|
| 50 |
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|
| 51 |
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|
| 52 |
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|
| 53 |
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|
| 54 |
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|
| 55 |
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|
| 56 |
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|
| 57 |
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|
| 58 |
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|
| 59 |
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|
| 60 |
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|
| 61 |
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|
| 62 |
+
107,
|
| 63 |
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108,
|
| 64 |
+
109,
|
| 65 |
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110,
|
| 66 |
+
111,
|
| 67 |
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112,
|
| 68 |
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113,
|
| 69 |
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114,
|
| 70 |
+
115,
|
| 71 |
+
116
|
| 72 |
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],
|
| 73 |
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"variable_domain_start_res_id": 1,
|
| 74 |
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"cdr1": {
|
| 75 |
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"indices": [
|
| 76 |
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|
| 77 |
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26,
|
| 78 |
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27,
|
| 79 |
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|
| 80 |
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|
| 81 |
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|
| 82 |
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31
|
| 83 |
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|
| 84 |
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},
|
| 85 |
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"cdr2": {
|
| 86 |
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|
| 87 |
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|
| 88 |
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|
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|
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|
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|
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|
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|
| 94 |
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|
| 95 |
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|
| 96 |
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|
| 97 |
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|
| 98 |
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|
| 99 |
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|
| 100 |
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|
| 101 |
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|
| 102 |
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|
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|
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|
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|
| 106 |
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|
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|
| 108 |
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|
| 109 |
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|
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|
| 111 |
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|
| 112 |
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|
| 113 |
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|
| 114 |
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|
| 115 |
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116
|
| 116 |
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|
| 117 |
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}
|
| 118 |
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},
|
| 119 |
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"L_chain": {
|
| 120 |
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|
| 121 |
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|
| 122 |
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|
| 123 |
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|
| 124 |
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|
| 125 |
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|
| 126 |
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|
| 127 |
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|
| 128 |
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|
| 129 |
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|
| 130 |
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|
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|
| 132 |
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|
| 133 |
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|
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|
| 135 |
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
| 145 |
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|
| 146 |
+
95,
|
| 147 |
+
96
|
| 148 |
+
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|
| 149 |
+
"variable_domain_start_res_id": 1,
|
| 150 |
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|
| 151 |
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|
| 152 |
+
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|
| 153 |
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|
| 154 |
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|
| 155 |
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|
| 156 |
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|
| 157 |
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|
| 158 |
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|
| 159 |
+
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|
| 160 |
+
31,
|
| 161 |
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32,
|
| 162 |
+
33
|
| 163 |
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|
| 164 |
+
},
|
| 165 |
+
"cdr2": {
|
| 166 |
+
"indices": [
|
| 167 |
+
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|
| 168 |
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|
| 169 |
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|
| 170 |
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|
| 171 |
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|
| 172 |
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|
| 173 |
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55
|
| 174 |
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|
| 175 |
+
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|
| 176 |
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"cdr3": {
|
| 177 |
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|
| 178 |
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|
| 179 |
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|
| 180 |
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|
| 181 |
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|
| 182 |
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|
| 183 |
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|
| 184 |
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|
| 185 |
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|
| 186 |
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96
|
| 187 |
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|
| 188 |
+
}
|
| 189 |
+
}
|
| 190 |
+
}
|
| 191 |
+
}
|
cdr_info/8r9y_B_C_A_cdr_info.json
ADDED
|
@@ -0,0 +1,181 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
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|
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|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"entry_name": "8r9y_B_C_A",
|
| 3 |
+
"heavy_chain_id": "B",
|
| 4 |
+
"light_chain_id": "C",
|
| 5 |
+
"chain_mapping": {
|
| 6 |
+
"protenix_to_original": {
|
| 7 |
+
"A": "A",
|
| 8 |
+
"B": "B",
|
| 9 |
+
"C": "C"
|
| 10 |
+
},
|
| 11 |
+
"original_to_protenix": {
|
| 12 |
+
"A": "A",
|
| 13 |
+
"B": "B",
|
| 14 |
+
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|
| 15 |
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},
|
| 16 |
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|
| 17 |
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{
|
| 18 |
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"protenix_chain": "A",
|
| 19 |
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|
| 20 |
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"seq_len": 214,
|
| 21 |
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"entity_type": "proteinChain"
|
| 22 |
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},
|
| 23 |
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{
|
| 24 |
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|
| 25 |
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|
| 26 |
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|
| 27 |
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|
| 28 |
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|
| 29 |
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{
|
| 30 |
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|
| 31 |
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|
| 32 |
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"seq_len": 209,
|
| 33 |
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|
| 34 |
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}
|
| 35 |
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]
|
| 36 |
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},
|
| 37 |
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|
| 38 |
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"H_chain": {
|
| 39 |
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|
| 40 |
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|
| 41 |
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|
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| 67 |
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| 68 |
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| 69 |
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|
| 70 |
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|
| 71 |
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|
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|
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|
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|
| 139 |
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|
| 140 |
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|
| 141 |
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|
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|
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|
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| 153 |
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|
| 154 |
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|
| 155 |
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|
| 156 |
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|
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|
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|
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|
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|
| 166 |
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|
| 167 |
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|
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|
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|
| 178 |
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|
| 179 |
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}
|
| 180 |
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}
|
| 181 |
+
}
|
cdr_info/8r9y_H_L_A_cdr_info.json
ADDED
|
@@ -0,0 +1,177 @@
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|
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|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
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|
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|
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|
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|
|
|
|
|
|
|
|
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|
|
|
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|
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|
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|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
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|
|
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|
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|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"entry_name": "8r9y_H_L_A",
|
| 3 |
+
"heavy_chain_id": "H",
|
| 4 |
+
"light_chain_id": "L",
|
| 5 |
+
"chain_mapping": {
|
| 6 |
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"protenix_to_original": {
|
| 7 |
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"A": "A",
|
| 8 |
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"B": "H",
|
| 9 |
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"C": "L"
|
| 10 |
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},
|
| 11 |
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"original_to_protenix": {
|
| 12 |
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"A": "A",
|
| 13 |
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"H": "B",
|
| 14 |
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"L": "C"
|
| 15 |
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},
|
| 16 |
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"sequence_order": [
|
| 17 |
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{
|
| 18 |
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"protenix_chain": "A",
|
| 19 |
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"original_chain": "A",
|
| 20 |
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"seq_len": 214,
|
| 21 |
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"entity_type": "proteinChain"
|
| 22 |
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},
|
| 23 |
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{
|
| 24 |
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|
| 25 |
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|
| 26 |
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"seq_len": 219,
|
| 27 |
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"entity_type": "proteinChain"
|
| 28 |
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},
|
| 29 |
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{
|
| 30 |
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"protenix_chain": "C",
|
| 31 |
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"original_chain": "L",
|
| 32 |
+
"seq_len": 212,
|
| 33 |
+
"entity_type": "proteinChain"
|
| 34 |
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}
|
| 35 |
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]
|
| 36 |
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},
|
| 37 |
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"cdr_info": {
|
| 38 |
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|
| 39 |
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"cdr_indices": [
|
| 40 |
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|
| 41 |
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|
| 42 |
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|
| 43 |
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|
| 44 |
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|
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|
| 47 |
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|
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|
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|
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|
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|
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|
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|
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|
| 55 |
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|
| 56 |
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|
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|
| 58 |
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|
| 59 |
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|
| 60 |
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|
| 61 |
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|
| 62 |
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|
| 63 |
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|
| 64 |
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|
| 65 |
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],
|
| 66 |
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"variable_domain_start_res_id": 1,
|
| 67 |
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|
| 68 |
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|
| 69 |
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|
| 70 |
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|
| 71 |
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|
| 72 |
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|
| 73 |
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|
| 74 |
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|
| 75 |
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|
| 76 |
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|
| 77 |
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|
| 78 |
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|
| 79 |
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|
| 80 |
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|
| 81 |
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|
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|
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|
| 84 |
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|
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|
| 86 |
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|
| 87 |
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|
| 88 |
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|
| 89 |
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|
| 90 |
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|
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|
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|
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|
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|
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|
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|
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|
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|
| 102 |
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|
| 103 |
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|
| 104 |
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|
| 105 |
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|
| 106 |
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|
| 107 |
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|
| 108 |
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
| 135 |
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|
| 136 |
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|
| 137 |
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
| 149 |
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|
| 150 |
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|
| 151 |
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|
| 152 |
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|
| 153 |
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|
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|
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|
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|
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|
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|
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|
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|
| 161 |
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|
| 162 |
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|
| 163 |
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|
| 164 |
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|
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|
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|
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|
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|
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|
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|
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|
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|
| 173 |
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|
| 174 |
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|
| 175 |
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}
|
| 176 |
+
}
|
| 177 |
+
}
|
cdr_info/8rz1_A_a_B_cdr_info.json
ADDED
|
@@ -0,0 +1,175 @@
|
|
|
|
|
|
|
|
|
|
|
|
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|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"entry_name": "8rz1_A_a_B",
|
| 3 |
+
"heavy_chain_id": "A",
|
| 4 |
+
"light_chain_id": "a",
|
| 5 |
+
"chain_mapping": {
|
| 6 |
+
"protenix_to_original": {
|
| 7 |
+
"A": "A",
|
| 8 |
+
"B": "B"
|
| 9 |
+
},
|
| 10 |
+
"original_to_protenix": {
|
| 11 |
+
"A": "A",
|
| 12 |
+
"B": "B"
|
| 13 |
+
},
|
| 14 |
+
"sequence_order": [
|
| 15 |
+
{
|
| 16 |
+
"protenix_chain": "A",
|
| 17 |
+
"original_chain": "A",
|
| 18 |
+
"seq_len": 285,
|
| 19 |
+
"entity_type": "proteinChain"
|
| 20 |
+
},
|
| 21 |
+
{
|
| 22 |
+
"protenix_chain": "B",
|
| 23 |
+
"original_chain": "B",
|
| 24 |
+
"seq_len": 119,
|
| 25 |
+
"entity_type": "proteinChain"
|
| 26 |
+
}
|
| 27 |
+
]
|
| 28 |
+
},
|
| 29 |
+
"cdr_info": {
|
| 30 |
+
"H_chain": {
|
| 31 |
+
"cdr_indices": [
|
| 32 |
+
25,
|
| 33 |
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26,
|
| 34 |
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27,
|
| 35 |
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|
| 36 |
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|
| 37 |
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|
| 38 |
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|
| 39 |
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|
| 40 |
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|
| 41 |
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|
| 42 |
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|
| 43 |
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|
| 44 |
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|
| 45 |
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|
| 46 |
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|
| 47 |
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|
| 48 |
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101,
|
| 49 |
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102,
|
| 50 |
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103,
|
| 51 |
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104,
|
| 52 |
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105,
|
| 53 |
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106,
|
| 54 |
+
107,
|
| 55 |
+
108
|
| 56 |
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],
|
| 57 |
+
"variable_domain_start_res_id": 32,
|
| 58 |
+
"cdr1": {
|
| 59 |
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"indices": [
|
| 60 |
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25,
|
| 61 |
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26,
|
| 62 |
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27,
|
| 63 |
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28,
|
| 64 |
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29,
|
| 65 |
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|
| 66 |
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31
|
| 67 |
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]
|
| 68 |
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},
|
| 69 |
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"cdr2": {
|
| 70 |
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"indices": [
|
| 71 |
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|
| 72 |
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|
| 73 |
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|
| 74 |
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|
| 75 |
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|
| 76 |
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|
| 77 |
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]
|
| 78 |
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},
|
| 79 |
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"cdr3": {
|
| 80 |
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"indices": [
|
| 81 |
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98,
|
| 82 |
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|
| 83 |
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100,
|
| 84 |
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101,
|
| 85 |
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|
| 86 |
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|
| 87 |
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|
| 88 |
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|
| 89 |
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|
| 90 |
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|
| 91 |
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108
|
| 92 |
+
]
|
| 93 |
+
}
|
| 94 |
+
},
|
| 95 |
+
"L_chain": {
|
| 96 |
+
"cdr_indices": [
|
| 97 |
+
22,
|
| 98 |
+
23,
|
| 99 |
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|
| 100 |
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25,
|
| 101 |
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|
| 102 |
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|
| 103 |
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|
| 104 |
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|
| 105 |
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|
| 106 |
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|
| 107 |
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|
| 108 |
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|
| 109 |
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|
| 110 |
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|
| 111 |
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|
| 112 |
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|
| 113 |
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|
| 114 |
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|
| 115 |
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|
| 116 |
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|
| 117 |
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|
| 118 |
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|
| 119 |
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|
| 120 |
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|
| 121 |
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|
| 122 |
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|
| 123 |
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|
| 124 |
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|
| 125 |
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|
| 126 |
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98,
|
| 127 |
+
99
|
| 128 |
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],
|
| 129 |
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"variable_domain_start_res_id": 167,
|
| 130 |
+
"cdr1": {
|
| 131 |
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"indices": [
|
| 132 |
+
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|
| 133 |
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23,
|
| 134 |
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|
| 135 |
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|
| 136 |
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|
| 137 |
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|
| 138 |
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|
| 139 |
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|
| 140 |
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|
| 141 |
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|
| 142 |
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32,
|
| 143 |
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33,
|
| 144 |
+
34
|
| 145 |
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]
|
| 146 |
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},
|
| 147 |
+
"cdr2": {
|
| 148 |
+
"indices": [
|
| 149 |
+
50,
|
| 150 |
+
51,
|
| 151 |
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52,
|
| 152 |
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53,
|
| 153 |
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54,
|
| 154 |
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55,
|
| 155 |
+
56
|
| 156 |
+
]
|
| 157 |
+
},
|
| 158 |
+
"cdr3": {
|
| 159 |
+
"indices": [
|
| 160 |
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|
| 161 |
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|
| 162 |
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|
| 163 |
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|
| 164 |
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|
| 165 |
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|
| 166 |
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|
| 167 |
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|
| 168 |
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|
| 169 |
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98,
|
| 170 |
+
99
|
| 171 |
+
]
|
| 172 |
+
}
|
| 173 |
+
}
|
| 174 |
+
}
|
| 175 |
+
}
|
cdr_info/8s61_B__A_cdr_info.json
ADDED
|
@@ -0,0 +1,102 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
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|
|
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|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"entry_name": "8s61_B__A",
|
| 3 |
+
"heavy_chain_id": "B",
|
| 4 |
+
"light_chain_id": null,
|
| 5 |
+
"chain_mapping": {
|
| 6 |
+
"protenix_to_original": {
|
| 7 |
+
"A": "B",
|
| 8 |
+
"B": "A"
|
| 9 |
+
},
|
| 10 |
+
"original_to_protenix": {
|
| 11 |
+
"B": "A",
|
| 12 |
+
"A": "B"
|
| 13 |
+
},
|
| 14 |
+
"sequence_order": [
|
| 15 |
+
{
|
| 16 |
+
"protenix_chain": "A",
|
| 17 |
+
"original_chain": "B",
|
| 18 |
+
"seq_len": 122,
|
| 19 |
+
"entity_type": "proteinChain"
|
| 20 |
+
},
|
| 21 |
+
{
|
| 22 |
+
"protenix_chain": "B",
|
| 23 |
+
"original_chain": "A",
|
| 24 |
+
"seq_len": 449,
|
| 25 |
+
"entity_type": "proteinChain"
|
| 26 |
+
}
|
| 27 |
+
]
|
| 28 |
+
},
|
| 29 |
+
"cdr_info": {
|
| 30 |
+
"H_chain": {
|
| 31 |
+
"cdr_indices": [
|
| 32 |
+
24,
|
| 33 |
+
25,
|
| 34 |
+
26,
|
| 35 |
+
27,
|
| 36 |
+
28,
|
| 37 |
+
29,
|
| 38 |
+
30,
|
| 39 |
+
50,
|
| 40 |
+
51,
|
| 41 |
+
52,
|
| 42 |
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53,
|
| 43 |
+
54,
|
| 44 |
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55,
|
| 45 |
+
97,
|
| 46 |
+
98,
|
| 47 |
+
99,
|
| 48 |
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100,
|
| 49 |
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101,
|
| 50 |
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102,
|
| 51 |
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103,
|
| 52 |
+
104,
|
| 53 |
+
105,
|
| 54 |
+
106,
|
| 55 |
+
107,
|
| 56 |
+
108,
|
| 57 |
+
109,
|
| 58 |
+
110
|
| 59 |
+
],
|
| 60 |
+
"variable_domain_start_res_id": 1,
|
| 61 |
+
"cdr1": {
|
| 62 |
+
"indices": [
|
| 63 |
+
24,
|
| 64 |
+
25,
|
| 65 |
+
26,
|
| 66 |
+
27,
|
| 67 |
+
28,
|
| 68 |
+
29,
|
| 69 |
+
30
|
| 70 |
+
]
|
| 71 |
+
},
|
| 72 |
+
"cdr2": {
|
| 73 |
+
"indices": [
|
| 74 |
+
50,
|
| 75 |
+
51,
|
| 76 |
+
52,
|
| 77 |
+
53,
|
| 78 |
+
54,
|
| 79 |
+
55
|
| 80 |
+
]
|
| 81 |
+
},
|
| 82 |
+
"cdr3": {
|
| 83 |
+
"indices": [
|
| 84 |
+
97,
|
| 85 |
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|
| 86 |
+
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|
| 87 |
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|
| 88 |
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|
| 89 |
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|
| 90 |
+
103,
|
| 91 |
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104,
|
| 92 |
+
105,
|
| 93 |
+
106,
|
| 94 |
+
107,
|
| 95 |
+
108,
|
| 96 |
+
109,
|
| 97 |
+
110
|
| 98 |
+
]
|
| 99 |
+
}
|
| 100 |
+
}
|
| 101 |
+
}
|
| 102 |
+
}
|
cdr_info/8scx_H_L_C_cdr_info.json
ADDED
|
@@ -0,0 +1,177 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"entry_name": "8scx_H_L_C",
|
| 3 |
+
"heavy_chain_id": "H",
|
| 4 |
+
"light_chain_id": "L",
|
| 5 |
+
"chain_mapping": {
|
| 6 |
+
"protenix_to_original": {
|
| 7 |
+
"A": "C",
|
| 8 |
+
"B": "L",
|
| 9 |
+
"C": "H"
|
| 10 |
+
},
|
| 11 |
+
"original_to_protenix": {
|
| 12 |
+
"C": "A",
|
| 13 |
+
"L": "B",
|
| 14 |
+
"H": "C"
|
| 15 |
+
},
|
| 16 |
+
"sequence_order": [
|
| 17 |
+
{
|
| 18 |
+
"protenix_chain": "A",
|
| 19 |
+
"original_chain": "C",
|
| 20 |
+
"seq_len": 431,
|
| 21 |
+
"entity_type": "proteinChain"
|
| 22 |
+
},
|
| 23 |
+
{
|
| 24 |
+
"protenix_chain": "B",
|
| 25 |
+
"original_chain": "L",
|
| 26 |
+
"seq_len": 238,
|
| 27 |
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"entity_type": "proteinChain"
|
| 28 |
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},
|
| 29 |
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{
|
| 30 |
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"protenix_chain": "C",
|
| 31 |
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|
| 32 |
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"seq_len": 238,
|
| 33 |
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"entity_type": "proteinChain"
|
| 34 |
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}
|
| 35 |
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|
| 36 |
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},
|
| 37 |
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|
| 38 |
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|
| 39 |
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|
| 40 |
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|
| 41 |
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|
| 42 |
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|
| 43 |
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|
| 44 |
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|
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|
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|
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|
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|
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|
| 51 |
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|
| 52 |
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|
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|
| 54 |
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|
| 55 |
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|
| 56 |
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|
| 57 |
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|
| 58 |
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|
| 59 |
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|
| 60 |
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|
| 61 |
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|
| 62 |
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|
| 63 |
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|
| 64 |
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|
| 65 |
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|
| 66 |
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|
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| 68 |
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|
| 69 |
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|
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| 71 |
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|
| 72 |
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|
| 73 |
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|
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|
| 75 |
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|
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|
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|
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|
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|
| 82 |
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|
| 83 |
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|
| 84 |
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|
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|
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|
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|
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|
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|
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|
| 92 |
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|
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|
| 94 |
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|
| 95 |
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|
| 96 |
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|
| 97 |
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|
| 98 |
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|
| 99 |
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|
| 100 |
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
| 118 |
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|
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|
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|
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|
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|
| 123 |
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|
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|
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|
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|
| 127 |
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|
| 128 |
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|
| 129 |
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|
| 130 |
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|
| 131 |
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|
| 132 |
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|
| 133 |
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|
| 134 |
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|
| 135 |
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|
| 136 |
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|
| 137 |
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|
| 138 |
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|
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|
| 140 |
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|
| 141 |
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|
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|
| 143 |
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|
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|
| 145 |
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|
| 146 |
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|
| 147 |
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|
| 148 |
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|
| 149 |
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|
| 150 |
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},
|
| 151 |
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"cdr2": {
|
| 152 |
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"indices": [
|
| 153 |
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|
| 154 |
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|
| 155 |
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|
| 156 |
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|
| 157 |
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|
| 158 |
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|
| 159 |
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|
| 160 |
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|
| 161 |
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|
| 162 |
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|
| 163 |
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|
| 164 |
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|
| 165 |
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|
| 166 |
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|
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|
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|
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|
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|
| 173 |
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|
| 174 |
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}
|
| 175 |
+
}
|
| 176 |
+
}
|
| 177 |
+
}
|
cdr_info/8sfx_D__B_cdr_info.json
ADDED
|
@@ -0,0 +1,98 @@
|
|
|
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|
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|
|
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|
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|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
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|
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|
|
|
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|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"entry_name": "8sfx_D__B",
|
| 3 |
+
"heavy_chain_id": "D",
|
| 4 |
+
"light_chain_id": null,
|
| 5 |
+
"chain_mapping": {
|
| 6 |
+
"protenix_to_original": {
|
| 7 |
+
"A": "B",
|
| 8 |
+
"B": "D"
|
| 9 |
+
},
|
| 10 |
+
"original_to_protenix": {
|
| 11 |
+
"B": "A",
|
| 12 |
+
"D": "B"
|
| 13 |
+
},
|
| 14 |
+
"sequence_order": [
|
| 15 |
+
{
|
| 16 |
+
"protenix_chain": "A",
|
| 17 |
+
"original_chain": "B",
|
| 18 |
+
"seq_len": 253,
|
| 19 |
+
"entity_type": "proteinChain"
|
| 20 |
+
},
|
| 21 |
+
{
|
| 22 |
+
"protenix_chain": "B",
|
| 23 |
+
"original_chain": "D",
|
| 24 |
+
"seq_len": 142,
|
| 25 |
+
"entity_type": "proteinChain"
|
| 26 |
+
}
|
| 27 |
+
]
|
| 28 |
+
},
|
| 29 |
+
"cdr_info": {
|
| 30 |
+
"H_chain": {
|
| 31 |
+
"cdr_indices": [
|
| 32 |
+
25,
|
| 33 |
+
26,
|
| 34 |
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27,
|
| 35 |
+
28,
|
| 36 |
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48,
|
| 37 |
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49,
|
| 38 |
+
50,
|
| 39 |
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51,
|
| 40 |
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|
| 41 |
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|
| 42 |
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|
| 43 |
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|
| 44 |
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|
| 45 |
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|
| 46 |
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|
| 47 |
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|
| 48 |
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|
| 49 |
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|
| 50 |
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|
| 51 |
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104,
|
| 52 |
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105,
|
| 53 |
+
106,
|
| 54 |
+
107,
|
| 55 |
+
108,
|
| 56 |
+
109
|
| 57 |
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],
|
| 58 |
+
"variable_domain_start_res_id": 5,
|
| 59 |
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"cdr1": {
|
| 60 |
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"indices": [
|
| 61 |
+
25,
|
| 62 |
+
26,
|
| 63 |
+
27,
|
| 64 |
+
28
|
| 65 |
+
]
|
| 66 |
+
},
|
| 67 |
+
"cdr2": {
|
| 68 |
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"indices": [
|
| 69 |
+
48,
|
| 70 |
+
49,
|
| 71 |
+
50,
|
| 72 |
+
51,
|
| 73 |
+
52,
|
| 74 |
+
53
|
| 75 |
+
]
|
| 76 |
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},
|
| 77 |
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"cdr3": {
|
| 78 |
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|
| 79 |
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|
| 80 |
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|
| 81 |
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|
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|
| 83 |
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|
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|
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|
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|
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|
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|
| 89 |
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|
| 90 |
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|
| 91 |
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|
| 92 |
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|
| 93 |
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|
| 94 |
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|
| 95 |
+
}
|
| 96 |
+
}
|
| 97 |
+
}
|
| 98 |
+
}
|
cdr_info/8sgt_H_L_A_cdr_info.json
ADDED
|
@@ -0,0 +1,183 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
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|
|
|
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|
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|
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|
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|
|
|
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|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
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|
|
|
|
|
|
|
|
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|
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|
|
|
|
|
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|
|
|
|
|
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|
|
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|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
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|
|
|
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|
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|
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|
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|
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|
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|
|
|
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|
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|
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|
|
|
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|
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|
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|
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|
|
|
|
|
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|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"entry_name": "8sgt_H_L_A",
|
| 3 |
+
"heavy_chain_id": "H",
|
| 4 |
+
"light_chain_id": "L",
|
| 5 |
+
"chain_mapping": {
|
| 6 |
+
"protenix_to_original": {
|
| 7 |
+
"A": "A",
|
| 8 |
+
"B": "L",
|
| 9 |
+
"C": "H"
|
| 10 |
+
},
|
| 11 |
+
"original_to_protenix": {
|
| 12 |
+
"A": "A",
|
| 13 |
+
"L": "B",
|
| 14 |
+
"H": "C"
|
| 15 |
+
},
|
| 16 |
+
"sequence_order": [
|
| 17 |
+
{
|
| 18 |
+
"protenix_chain": "A",
|
| 19 |
+
"original_chain": "A",
|
| 20 |
+
"seq_len": 982,
|
| 21 |
+
"entity_type": "proteinChain"
|
| 22 |
+
},
|
| 23 |
+
{
|
| 24 |
+
"protenix_chain": "B",
|
| 25 |
+
"original_chain": "L",
|
| 26 |
+
"seq_len": 202,
|
| 27 |
+
"entity_type": "proteinChain"
|
| 28 |
+
},
|
| 29 |
+
{
|
| 30 |
+
"protenix_chain": "C",
|
| 31 |
+
"original_chain": "H",
|
| 32 |
+
"seq_len": 249,
|
| 33 |
+
"entity_type": "proteinChain"
|
| 34 |
+
}
|
| 35 |
+
]
|
| 36 |
+
},
|
| 37 |
+
"cdr_info": {
|
| 38 |
+
"H_chain": {
|
| 39 |
+
"cdr_indices": [
|
| 40 |
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25,
|
| 41 |
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26,
|
| 42 |
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27,
|
| 43 |
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28,
|
| 44 |
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|
| 45 |
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|
| 46 |
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|
| 47 |
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|
| 48 |
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|
| 49 |
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|
| 50 |
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|
| 51 |
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55,
|
| 52 |
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|
| 53 |
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98,
|
| 54 |
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99,
|
| 55 |
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100,
|
| 56 |
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101,
|
| 57 |
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102,
|
| 58 |
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103,
|
| 59 |
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104,
|
| 60 |
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105,
|
| 61 |
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106,
|
| 62 |
+
107,
|
| 63 |
+
108,
|
| 64 |
+
109
|
| 65 |
+
],
|
| 66 |
+
"variable_domain_start_res_id": 1,
|
| 67 |
+
"cdr1": {
|
| 68 |
+
"indices": [
|
| 69 |
+
25,
|
| 70 |
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26,
|
| 71 |
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27,
|
| 72 |
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28,
|
| 73 |
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29,
|
| 74 |
+
30,
|
| 75 |
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31
|
| 76 |
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]
|
| 77 |
+
},
|
| 78 |
+
"cdr2": {
|
| 79 |
+
"indices": [
|
| 80 |
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51,
|
| 81 |
+
52,
|
| 82 |
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53,
|
| 83 |
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54,
|
| 84 |
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55,
|
| 85 |
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56
|
| 86 |
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]
|
| 87 |
+
},
|
| 88 |
+
"cdr3": {
|
| 89 |
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|
| 90 |
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98,
|
| 91 |
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99,
|
| 92 |
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100,
|
| 93 |
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101,
|
| 94 |
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102,
|
| 95 |
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103,
|
| 96 |
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|
| 97 |
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105,
|
| 98 |
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106,
|
| 99 |
+
107,
|
| 100 |
+
108,
|
| 101 |
+
109
|
| 102 |
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]
|
| 103 |
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}
|
| 104 |
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},
|
| 105 |
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"L_chain": {
|
| 106 |
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"cdr_indices": [
|
| 107 |
+
22,
|
| 108 |
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|
| 109 |
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|
| 110 |
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|
| 111 |
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|
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|
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|
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|
| 116 |
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|
| 117 |
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|
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|
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|
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|
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|
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|
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| 124 |
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|
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|
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|
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|
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|
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|
| 134 |
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|
| 135 |
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|
| 136 |
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|
| 137 |
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|
| 138 |
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"variable_domain_start_res_id": 1,
|
| 139 |
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|
| 140 |
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|
| 141 |
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|
| 142 |
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|
| 143 |
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|
| 144 |
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|
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|
| 146 |
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|
| 147 |
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|
| 148 |
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|
| 149 |
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|
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|
| 151 |
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|
| 152 |
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|
| 153 |
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|
| 154 |
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|
| 155 |
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|
| 156 |
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|
| 157 |
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"cdr2": {
|
| 158 |
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|
| 159 |
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|
| 160 |
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|
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|
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|
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|
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|
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|
| 166 |
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|
| 167 |
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|
| 168 |
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|
| 169 |
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|
| 170 |
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|
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|
| 172 |
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|
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|
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|
| 175 |
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|
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|
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|
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|
| 179 |
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|
| 180 |
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|
| 181 |
+
}
|
| 182 |
+
}
|
| 183 |
+
}
|
cdr_info/8sic_A_B_E_cdr_info.json
ADDED
|
@@ -0,0 +1,187 @@
|
|
|
|
|
|
|
|
|
|
|
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|
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|
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|
|
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|
|
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|
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|
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|
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|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
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|
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|
|
|
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|
|
|
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|
|
|
|
|
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|
|
|
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|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
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|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
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|
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|
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|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
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|
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|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"entry_name": "8sic_A_B_E",
|
| 3 |
+
"heavy_chain_id": "A",
|
| 4 |
+
"light_chain_id": "B",
|
| 5 |
+
"chain_mapping": {
|
| 6 |
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"protenix_to_original": {
|
| 7 |
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"A": "A",
|
| 8 |
+
"B": "B",
|
| 9 |
+
"C": "E"
|
| 10 |
+
},
|
| 11 |
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"original_to_protenix": {
|
| 12 |
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"A": "A",
|
| 13 |
+
"B": "B",
|
| 14 |
+
"E": "C"
|
| 15 |
+
},
|
| 16 |
+
"sequence_order": [
|
| 17 |
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{
|
| 18 |
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"protenix_chain": "A",
|
| 19 |
+
"original_chain": "A",
|
| 20 |
+
"seq_len": 222,
|
| 21 |
+
"entity_type": "proteinChain"
|
| 22 |
+
},
|
| 23 |
+
{
|
| 24 |
+
"protenix_chain": "B",
|
| 25 |
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"original_chain": "B",
|
| 26 |
+
"seq_len": 215,
|
| 27 |
+
"entity_type": "proteinChain"
|
| 28 |
+
},
|
| 29 |
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{
|
| 30 |
+
"protenix_chain": "C",
|
| 31 |
+
"original_chain": "E",
|
| 32 |
+
"seq_len": 431,
|
| 33 |
+
"entity_type": "proteinChain"
|
| 34 |
+
}
|
| 35 |
+
]
|
| 36 |
+
},
|
| 37 |
+
"cdr_info": {
|
| 38 |
+
"H_chain": {
|
| 39 |
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"cdr_indices": [
|
| 40 |
+
24,
|
| 41 |
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25,
|
| 42 |
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26,
|
| 43 |
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27,
|
| 44 |
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|
| 45 |
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|
| 46 |
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|
| 47 |
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|
| 48 |
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|
| 49 |
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|
| 50 |
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|
| 51 |
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|
| 52 |
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|
| 53 |
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|
| 54 |
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|
| 55 |
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|
| 56 |
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|
| 57 |
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101,
|
| 58 |
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102,
|
| 59 |
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103,
|
| 60 |
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104,
|
| 61 |
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|
| 62 |
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106,
|
| 63 |
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107,
|
| 64 |
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108
|
| 65 |
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],
|
| 66 |
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"variable_domain_start_res_id": 1,
|
| 67 |
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"cdr1": {
|
| 68 |
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|
| 69 |
+
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|
| 70 |
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25,
|
| 71 |
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26,
|
| 72 |
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27,
|
| 73 |
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|
| 74 |
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29
|
| 75 |
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|
| 76 |
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|
| 77 |
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|
| 78 |
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|
| 79 |
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|
| 80 |
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|
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|
| 82 |
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|
| 83 |
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|
| 84 |
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|
| 85 |
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|
| 86 |
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|
| 87 |
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|
| 88 |
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|
| 89 |
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|
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|
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|
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|
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|
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|
| 102 |
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|
| 103 |
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|
| 104 |
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|
| 105 |
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|
| 106 |
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|
| 107 |
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
| 139 |
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|
| 140 |
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|
| 141 |
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|
| 142 |
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|
| 143 |
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
| 154 |
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|
| 155 |
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|
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|
| 157 |
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|
| 158 |
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|
| 159 |
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|
| 160 |
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|
| 161 |
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|
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|
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|
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|
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|
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|
| 167 |
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|
| 168 |
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|
| 169 |
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|
| 170 |
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|
| 171 |
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|
| 172 |
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
| 182 |
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|
| 183 |
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|
| 184 |
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|
| 185 |
+
}
|
| 186 |
+
}
|
| 187 |
+
}
|
cdr_info/8smk_B_C_A_cdr_info.json
ADDED
|
@@ -0,0 +1,181 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
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|
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|
|
|
|
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|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
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|
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|
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|
|
|
|
|
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|
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|
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|
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|
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|
|
|
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|
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|
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|
|
|
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|
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|
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|
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|
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|
|
|
|
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|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
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|
|
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|
|
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|
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|
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|
|
|
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|
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|
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|
|
|
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|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"entry_name": "8smk_B_C_A",
|
| 3 |
+
"heavy_chain_id": "B",
|
| 4 |
+
"light_chain_id": "C",
|
| 5 |
+
"chain_mapping": {
|
| 6 |
+
"protenix_to_original": {
|
| 7 |
+
"A": "A",
|
| 8 |
+
"B": "B",
|
| 9 |
+
"C": "C"
|
| 10 |
+
},
|
| 11 |
+
"original_to_protenix": {
|
| 12 |
+
"A": "A",
|
| 13 |
+
"B": "B",
|
| 14 |
+
"C": "C"
|
| 15 |
+
},
|
| 16 |
+
"sequence_order": [
|
| 17 |
+
{
|
| 18 |
+
"protenix_chain": "A",
|
| 19 |
+
"original_chain": "A",
|
| 20 |
+
"seq_len": 695,
|
| 21 |
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"entity_type": "proteinChain"
|
| 22 |
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},
|
| 23 |
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{
|
| 24 |
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|
| 25 |
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|
| 26 |
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|
| 27 |
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|
| 28 |
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},
|
| 29 |
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{
|
| 30 |
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"protenix_chain": "C",
|
| 31 |
+
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|
| 32 |
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|
| 33 |
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|
| 34 |
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|
| 35 |
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|
| 36 |
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|
| 37 |
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|
| 38 |
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|
| 39 |
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|
| 40 |
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|
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|
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|
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|
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|
| 63 |
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|
| 64 |
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|
| 65 |
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|
| 66 |
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|
| 67 |
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|
| 68 |
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|
| 69 |
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|
| 70 |
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|
| 78 |
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| 79 |
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|
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|
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|
| 86 |
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|
| 87 |
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|
| 88 |
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|
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| 90 |
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|
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|
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|
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|
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|
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|
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|
| 102 |
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|
| 103 |
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|
| 104 |
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|
| 105 |
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|
| 106 |
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|
| 107 |
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|
| 108 |
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
| 135 |
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|
| 136 |
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|
| 137 |
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|
| 138 |
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|
| 139 |
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|
| 140 |
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|
| 141 |
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|
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|
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|
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|
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|
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|
| 149 |
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|
| 150 |
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|
| 151 |
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|
| 152 |
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|
| 153 |
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"cdr2": {
|
| 154 |
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|
| 155 |
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|
| 156 |
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|
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|
| 158 |
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|
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|
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|
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|
| 162 |
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|
| 163 |
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|
| 164 |
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|
| 165 |
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|
| 166 |
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|
| 167 |
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|
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|
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|
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|
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|
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|
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|
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|
| 175 |
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|
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|
| 177 |
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|
| 178 |
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|
| 179 |
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}
|
| 180 |
+
}
|
| 181 |
+
}
|
cdr_info/8sne_C__A_cdr_info.json
ADDED
|
@@ -0,0 +1,100 @@
|
|
|
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|
|
|
|
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|
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|
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|
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|
|
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|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
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|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"entry_name": "8sne_C__A",
|
| 3 |
+
"heavy_chain_id": "C",
|
| 4 |
+
"light_chain_id": null,
|
| 5 |
+
"chain_mapping": {
|
| 6 |
+
"protenix_to_original": {
|
| 7 |
+
"A": "A",
|
| 8 |
+
"B": "C"
|
| 9 |
+
},
|
| 10 |
+
"original_to_protenix": {
|
| 11 |
+
"A": "A",
|
| 12 |
+
"C": "B"
|
| 13 |
+
},
|
| 14 |
+
"sequence_order": [
|
| 15 |
+
{
|
| 16 |
+
"protenix_chain": "A",
|
| 17 |
+
"original_chain": "A",
|
| 18 |
+
"seq_len": 574,
|
| 19 |
+
"entity_type": "proteinChain"
|
| 20 |
+
},
|
| 21 |
+
{
|
| 22 |
+
"protenix_chain": "B",
|
| 23 |
+
"original_chain": "C",
|
| 24 |
+
"seq_len": 132,
|
| 25 |
+
"entity_type": "proteinChain"
|
| 26 |
+
}
|
| 27 |
+
]
|
| 28 |
+
},
|
| 29 |
+
"cdr_info": {
|
| 30 |
+
"H_chain": {
|
| 31 |
+
"cdr_indices": [
|
| 32 |
+
25,
|
| 33 |
+
26,
|
| 34 |
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27,
|
| 35 |
+
28,
|
| 36 |
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29,
|
| 37 |
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30,
|
| 38 |
+
31,
|
| 39 |
+
51,
|
| 40 |
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|
| 41 |
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|
| 42 |
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|
| 43 |
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|
| 44 |
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97,
|
| 45 |
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|
| 46 |
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|
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|
| 48 |
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|
| 49 |
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|
| 50 |
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|
| 51 |
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|
| 52 |
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|
| 53 |
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|
| 54 |
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|
| 55 |
+
108,
|
| 56 |
+
109,
|
| 57 |
+
110
|
| 58 |
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],
|
| 59 |
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"variable_domain_start_res_id": 1,
|
| 60 |
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|
| 61 |
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"indices": [
|
| 62 |
+
25,
|
| 63 |
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26,
|
| 64 |
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|
| 65 |
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28,
|
| 66 |
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29,
|
| 67 |
+
30,
|
| 68 |
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31
|
| 69 |
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]
|
| 70 |
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},
|
| 71 |
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"cdr2": {
|
| 72 |
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"indices": [
|
| 73 |
+
51,
|
| 74 |
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|
| 75 |
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|
| 76 |
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|
| 77 |
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|
| 78 |
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|
| 79 |
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},
|
| 80 |
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|
| 81 |
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|
| 82 |
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|
| 83 |
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|
| 84 |
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|
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|
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|
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|
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|
| 89 |
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|
| 90 |
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|
| 91 |
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|
| 92 |
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107,
|
| 93 |
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108,
|
| 94 |
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109,
|
| 95 |
+
110
|
| 96 |
+
]
|
| 97 |
+
}
|
| 98 |
+
}
|
| 99 |
+
}
|
| 100 |
+
}
|
cdr_info/8so3_Y_Z_X_cdr_info.json
ADDED
|
@@ -0,0 +1,181 @@
|
|
|
|
|
|
|
|
|
|
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|
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|
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|
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|
|
|
|
|
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|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
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|
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|
|
|
|
|
|
|
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|
|
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|
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|
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|
|
|
|
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|
|
|
|
|
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|
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|
|
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|
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|
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|
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|
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|
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|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
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|
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|
|
|
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|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"entry_name": "8so3_Y_Z_X",
|
| 3 |
+
"heavy_chain_id": "Y",
|
| 4 |
+
"light_chain_id": "Z",
|
| 5 |
+
"chain_mapping": {
|
| 6 |
+
"protenix_to_original": {
|
| 7 |
+
"A": "X",
|
| 8 |
+
"B": "Y",
|
| 9 |
+
"C": "Z"
|
| 10 |
+
},
|
| 11 |
+
"original_to_protenix": {
|
| 12 |
+
"X": "A",
|
| 13 |
+
"Y": "B",
|
| 14 |
+
"Z": "C"
|
| 15 |
+
},
|
| 16 |
+
"sequence_order": [
|
| 17 |
+
{
|
| 18 |
+
"protenix_chain": "A",
|
| 19 |
+
"original_chain": "X",
|
| 20 |
+
"seq_len": 525,
|
| 21 |
+
"entity_type": "proteinChain"
|
| 22 |
+
},
|
| 23 |
+
{
|
| 24 |
+
"protenix_chain": "B",
|
| 25 |
+
"original_chain": "Y",
|
| 26 |
+
"seq_len": 252,
|
| 27 |
+
"entity_type": "proteinChain"
|
| 28 |
+
},
|
| 29 |
+
{
|
| 30 |
+
"protenix_chain": "C",
|
| 31 |
+
"original_chain": "Z",
|
| 32 |
+
"seq_len": 238,
|
| 33 |
+
"entity_type": "proteinChain"
|
| 34 |
+
}
|
| 35 |
+
]
|
| 36 |
+
},
|
| 37 |
+
"cdr_info": {
|
| 38 |
+
"H_chain": {
|
| 39 |
+
"cdr_indices": [
|
| 40 |
+
25,
|
| 41 |
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26,
|
| 42 |
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27,
|
| 43 |
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28,
|
| 44 |
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29,
|
| 45 |
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30,
|
| 46 |
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31,
|
| 47 |
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51,
|
| 48 |
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52,
|
| 49 |
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53,
|
| 50 |
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54,
|
| 51 |
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55,
|
| 52 |
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56,
|
| 53 |
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98,
|
| 54 |
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99,
|
| 55 |
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100,
|
| 56 |
+
101,
|
| 57 |
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102,
|
| 58 |
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103,
|
| 59 |
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104,
|
| 60 |
+
105,
|
| 61 |
+
106,
|
| 62 |
+
107
|
| 63 |
+
],
|
| 64 |
+
"variable_domain_start_res_id": 20,
|
| 65 |
+
"cdr1": {
|
| 66 |
+
"indices": [
|
| 67 |
+
25,
|
| 68 |
+
26,
|
| 69 |
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27,
|
| 70 |
+
28,
|
| 71 |
+
29,
|
| 72 |
+
30,
|
| 73 |
+
31
|
| 74 |
+
]
|
| 75 |
+
},
|
| 76 |
+
"cdr2": {
|
| 77 |
+
"indices": [
|
| 78 |
+
51,
|
| 79 |
+
52,
|
| 80 |
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53,
|
| 81 |
+
54,
|
| 82 |
+
55,
|
| 83 |
+
56
|
| 84 |
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]
|
| 85 |
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},
|
| 86 |
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"cdr3": {
|
| 87 |
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"indices": [
|
| 88 |
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|
| 89 |
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|
| 90 |
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|
| 91 |
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101,
|
| 92 |
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|
| 93 |
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|
| 94 |
+
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|
| 95 |
+
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|
| 96 |
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106,
|
| 97 |
+
107
|
| 98 |
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]
|
| 99 |
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}
|
| 100 |
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},
|
| 101 |
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"L_chain": {
|
| 102 |
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|
| 103 |
+
23,
|
| 104 |
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|
| 105 |
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|
| 106 |
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|
| 107 |
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|
| 108 |
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|
| 109 |
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|
| 110 |
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|
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|
| 112 |
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|
| 113 |
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|
| 114 |
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|
| 115 |
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|
| 116 |
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|
| 117 |
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|
| 118 |
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|
| 119 |
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|
| 120 |
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|
| 121 |
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|
| 122 |
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|
| 123 |
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|
| 124 |
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|
| 125 |
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|
| 126 |
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|
| 127 |
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|
| 128 |
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|
| 129 |
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|
| 130 |
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|
| 131 |
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|
| 132 |
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|
| 133 |
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100
|
| 134 |
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|
| 135 |
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"variable_domain_start_res_id": 21,
|
| 136 |
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|
| 137 |
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"indices": [
|
| 138 |
+
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|
| 139 |
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|
| 140 |
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|
| 141 |
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|
| 142 |
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|
| 143 |
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|
| 144 |
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|
| 145 |
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|
| 146 |
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|
| 147 |
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|
| 148 |
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|
| 149 |
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|
| 150 |
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|
| 151 |
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|
| 152 |
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|
| 153 |
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|
| 154 |
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|
| 155 |
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"cdr2": {
|
| 156 |
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|
| 157 |
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|
| 158 |
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|
| 159 |
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|
| 160 |
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|
| 161 |
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|
| 162 |
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|
| 163 |
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|
| 164 |
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|
| 165 |
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|
| 166 |
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|
| 167 |
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|
| 168 |
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|
| 169 |
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|
| 170 |
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|
| 171 |
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|
| 172 |
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|
| 173 |
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|
| 174 |
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|
| 175 |
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|
| 176 |
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|
| 177 |
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|
| 178 |
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}
|
| 179 |
+
}
|
| 180 |
+
}
|
| 181 |
+
}
|
cdr_info/8sr0_Y_Z_X_cdr_info.json
ADDED
|
@@ -0,0 +1,181 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
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|
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|
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|
|
|
|
|
|
|
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|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
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|
|
|
|
|
|
|
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|
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|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"entry_name": "8sr0_Y_Z_X",
|
| 3 |
+
"heavy_chain_id": "Y",
|
| 4 |
+
"light_chain_id": "Z",
|
| 5 |
+
"chain_mapping": {
|
| 6 |
+
"protenix_to_original": {
|
| 7 |
+
"A": "X",
|
| 8 |
+
"B": "Y",
|
| 9 |
+
"C": "Z"
|
| 10 |
+
},
|
| 11 |
+
"original_to_protenix": {
|
| 12 |
+
"X": "A",
|
| 13 |
+
"Y": "B",
|
| 14 |
+
"Z": "C"
|
| 15 |
+
},
|
| 16 |
+
"sequence_order": [
|
| 17 |
+
{
|
| 18 |
+
"protenix_chain": "A",
|
| 19 |
+
"original_chain": "X",
|
| 20 |
+
"seq_len": 525,
|
| 21 |
+
"entity_type": "proteinChain"
|
| 22 |
+
},
|
| 23 |
+
{
|
| 24 |
+
"protenix_chain": "B",
|
| 25 |
+
"original_chain": "Y",
|
| 26 |
+
"seq_len": 252,
|
| 27 |
+
"entity_type": "proteinChain"
|
| 28 |
+
},
|
| 29 |
+
{
|
| 30 |
+
"protenix_chain": "C",
|
| 31 |
+
"original_chain": "Z",
|
| 32 |
+
"seq_len": 238,
|
| 33 |
+
"entity_type": "proteinChain"
|
| 34 |
+
}
|
| 35 |
+
]
|
| 36 |
+
},
|
| 37 |
+
"cdr_info": {
|
| 38 |
+
"H_chain": {
|
| 39 |
+
"cdr_indices": [
|
| 40 |
+
25,
|
| 41 |
+
26,
|
| 42 |
+
27,
|
| 43 |
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28,
|
| 44 |
+
29,
|
| 45 |
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30,
|
| 46 |
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31,
|
| 47 |
+
51,
|
| 48 |
+
52,
|
| 49 |
+
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|
| 50 |
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|
| 51 |
+
55,
|
| 52 |
+
56,
|
| 53 |
+
98,
|
| 54 |
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|
| 55 |
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100,
|
| 56 |
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101,
|
| 57 |
+
102,
|
| 58 |
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103,
|
| 59 |
+
104,
|
| 60 |
+
105,
|
| 61 |
+
106,
|
| 62 |
+
107
|
| 63 |
+
],
|
| 64 |
+
"variable_domain_start_res_id": 20,
|
| 65 |
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"cdr1": {
|
| 66 |
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"indices": [
|
| 67 |
+
25,
|
| 68 |
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26,
|
| 69 |
+
27,
|
| 70 |
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28,
|
| 71 |
+
29,
|
| 72 |
+
30,
|
| 73 |
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31
|
| 74 |
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]
|
| 75 |
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},
|
| 76 |
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"cdr2": {
|
| 77 |
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"indices": [
|
| 78 |
+
51,
|
| 79 |
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52,
|
| 80 |
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53,
|
| 81 |
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54,
|
| 82 |
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55,
|
| 83 |
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56
|
| 84 |
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|
| 85 |
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},
|
| 86 |
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"cdr3": {
|
| 87 |
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"indices": [
|
| 88 |
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98,
|
| 89 |
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|
| 90 |
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100,
|
| 91 |
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|
| 92 |
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|
| 93 |
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|
| 94 |
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|
| 95 |
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|
| 96 |
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106,
|
| 97 |
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107
|
| 98 |
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|
| 99 |
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}
|
| 100 |
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},
|
| 101 |
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"L_chain": {
|
| 102 |
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|
| 103 |
+
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|
| 104 |
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|
| 105 |
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|
| 106 |
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|
| 107 |
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|
| 108 |
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|
| 109 |
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|
| 110 |
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|
| 111 |
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|
| 112 |
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|
| 113 |
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|
| 114 |
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|
| 115 |
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|
| 116 |
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|
| 117 |
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|
| 118 |
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|
| 119 |
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|
| 120 |
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|
| 121 |
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|
| 122 |
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|
| 123 |
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|
| 124 |
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|
| 125 |
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|
| 126 |
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|
| 127 |
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|
| 128 |
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|
| 129 |
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|
| 130 |
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|
| 131 |
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|
| 132 |
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|
| 133 |
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|
| 134 |
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|
| 135 |
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"variable_domain_start_res_id": 21,
|
| 136 |
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|
| 137 |
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|
| 138 |
+
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|
| 139 |
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|
| 140 |
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|
| 141 |
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|
| 142 |
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|
| 143 |
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|
| 144 |
+
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|
| 145 |
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|
| 146 |
+
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|
| 147 |
+
32,
|
| 148 |
+
33,
|
| 149 |
+
34,
|
| 150 |
+
35,
|
| 151 |
+
36,
|
| 152 |
+
37
|
| 153 |
+
]
|
| 154 |
+
},
|
| 155 |
+
"cdr2": {
|
| 156 |
+
"indices": [
|
| 157 |
+
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|
| 158 |
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|
| 159 |
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|
| 160 |
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|
| 161 |
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|
| 162 |
+
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|
| 163 |
+
59
|
| 164 |
+
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|
| 165 |
+
},
|
| 166 |
+
"cdr3": {
|
| 167 |
+
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|
| 168 |
+
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|
| 169 |
+
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|
| 170 |
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|
| 171 |
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|
| 172 |
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|
| 173 |
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|
| 174 |
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|
| 175 |
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|
| 176 |
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100
|
| 177 |
+
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|
| 178 |
+
}
|
| 179 |
+
}
|
| 180 |
+
}
|
| 181 |
+
}
|
cdr_info/8t03_C_D_A_cdr_info.json
ADDED
|
@@ -0,0 +1,175 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"entry_name": "8t03_C_D_A",
|
| 3 |
+
"heavy_chain_id": "C",
|
| 4 |
+
"light_chain_id": "D",
|
| 5 |
+
"chain_mapping": {
|
| 6 |
+
"protenix_to_original": {
|
| 7 |
+
"A": "A",
|
| 8 |
+
"B": "C",
|
| 9 |
+
"C": "D"
|
| 10 |
+
},
|
| 11 |
+
"original_to_protenix": {
|
| 12 |
+
"A": "A",
|
| 13 |
+
"C": "B",
|
| 14 |
+
"D": "C"
|
| 15 |
+
},
|
| 16 |
+
"sequence_order": [
|
| 17 |
+
{
|
| 18 |
+
"protenix_chain": "A",
|
| 19 |
+
"original_chain": "A",
|
| 20 |
+
"seq_len": 221,
|
| 21 |
+
"entity_type": "proteinChain"
|
| 22 |
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},
|
| 23 |
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{
|
| 24 |
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|
| 25 |
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|
| 26 |
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|
| 27 |
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"entity_type": "proteinChain"
|
| 28 |
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|
| 29 |
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{
|
| 30 |
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|
| 31 |
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|
| 32 |
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"seq_len": 107,
|
| 33 |
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"entity_type": "proteinChain"
|
| 34 |
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}
|
| 35 |
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|
| 36 |
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},
|
| 37 |
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|
| 38 |
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|
| 39 |
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|
| 40 |
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|
| 41 |
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| 42 |
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| 63 |
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|
| 64 |
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|
| 65 |
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| 66 |
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|
| 67 |
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|
| 68 |
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| 78 |
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| 79 |
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|
| 80 |
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|
| 81 |
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|
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| 101 |
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|
| 102 |
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|
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| 104 |
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|
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|
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|
| 133 |
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|
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|
| 135 |
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|
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|
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|
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|
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| 147 |
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|
| 148 |
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|
| 149 |
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|
| 150 |
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|
| 151 |
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|
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|
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|
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| 160 |
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|
| 172 |
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|
| 173 |
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}
|
| 174 |
+
}
|
| 175 |
+
}
|
cdr_info/8t04_C_D_A_cdr_info.json
ADDED
|
@@ -0,0 +1,175 @@
|
|
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|
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|
|
|
|
|
|
|
|
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|
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|
|
|
|
|
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|
|
|
|
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|
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|
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|
|
|
|
|
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|
|
|
|
|
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|
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|
|
|
|
|
|
|
|
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|
|
|
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|
|
|
|
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|
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|
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|
|
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|
|
|
|
|
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|
|
|
|
|
|
|
|
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|
|
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|
|
|
|
|
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|
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|
|
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|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"entry_name": "8t04_C_D_A",
|
| 3 |
+
"heavy_chain_id": "C",
|
| 4 |
+
"light_chain_id": "D",
|
| 5 |
+
"chain_mapping": {
|
| 6 |
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"protenix_to_original": {
|
| 7 |
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"A": "A",
|
| 8 |
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"B": "C",
|
| 9 |
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"C": "D"
|
| 10 |
+
},
|
| 11 |
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"original_to_protenix": {
|
| 12 |
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"A": "A",
|
| 13 |
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"C": "B",
|
| 14 |
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"D": "C"
|
| 15 |
+
},
|
| 16 |
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"sequence_order": [
|
| 17 |
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{
|
| 18 |
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"protenix_chain": "A",
|
| 19 |
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"original_chain": "A",
|
| 20 |
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"seq_len": 221,
|
| 21 |
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"entity_type": "proteinChain"
|
| 22 |
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},
|
| 23 |
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{
|
| 24 |
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"protenix_chain": "B",
|
| 25 |
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"original_chain": "C",
|
| 26 |
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"seq_len": 120,
|
| 27 |
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"entity_type": "proteinChain"
|
| 28 |
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},
|
| 29 |
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{
|
| 30 |
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"protenix_chain": "C",
|
| 31 |
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"original_chain": "D",
|
| 32 |
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"seq_len": 107,
|
| 33 |
+
"entity_type": "proteinChain"
|
| 34 |
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}
|
| 35 |
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]
|
| 36 |
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},
|
| 37 |
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"cdr_info": {
|
| 38 |
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|
| 39 |
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|
| 40 |
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|
| 41 |
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|
| 42 |
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|
| 43 |
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|
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|
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|
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|
| 48 |
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
| 58 |
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|
| 59 |
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|
| 60 |
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|
| 61 |
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|
| 62 |
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|
| 63 |
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|
| 64 |
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],
|
| 65 |
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"variable_domain_start_res_id": 1,
|
| 66 |
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|
| 67 |
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|
| 68 |
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|
| 69 |
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|
| 70 |
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|
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|
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|
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|
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|
| 75 |
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|
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|
| 77 |
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|
| 78 |
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|
| 79 |
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|
| 80 |
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|
| 81 |
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|
| 82 |
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|
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|
| 84 |
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|
| 85 |
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|
| 86 |
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|
| 87 |
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|
| 88 |
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|
| 89 |
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|
| 90 |
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|
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|
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|
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|
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|
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|
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|
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|
| 100 |
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|
| 101 |
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|
| 102 |
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|
| 103 |
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|
| 104 |
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|
| 105 |
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
| 130 |
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|
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|
| 132 |
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|
| 133 |
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|
| 134 |
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|
| 135 |
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|
| 136 |
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
| 147 |
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|
| 148 |
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|
| 149 |
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|
| 150 |
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|
| 151 |
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|
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|
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|
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|
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|
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|
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|
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|
| 159 |
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|
| 160 |
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|
| 161 |
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
| 171 |
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|
| 172 |
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|
| 173 |
+
}
|
| 174 |
+
}
|
| 175 |
+
}
|
cdr_info/8tfn_H_L_B_cdr_info.json
ADDED
|
@@ -0,0 +1,173 @@
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
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|
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|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"entry_name": "8tfn_H_L_B",
|
| 3 |
+
"heavy_chain_id": "H",
|
| 4 |
+
"light_chain_id": "L",
|
| 5 |
+
"chain_mapping": {
|
| 6 |
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"protenix_to_original": {
|
| 7 |
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"A": "B",
|
| 8 |
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"B": "H",
|
| 9 |
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"C": "L"
|
| 10 |
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},
|
| 11 |
+
"original_to_protenix": {
|
| 12 |
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"B": "A",
|
| 13 |
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"H": "B",
|
| 14 |
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"L": "C"
|
| 15 |
+
},
|
| 16 |
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"sequence_order": [
|
| 17 |
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{
|
| 18 |
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"protenix_chain": "A",
|
| 19 |
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|
| 20 |
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"seq_len": 242,
|
| 21 |
+
"entity_type": "proteinChain"
|
| 22 |
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},
|
| 23 |
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{
|
| 24 |
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|
| 25 |
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"original_chain": "H",
|
| 26 |
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"seq_len": 225,
|
| 27 |
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"entity_type": "proteinChain"
|
| 28 |
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},
|
| 29 |
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{
|
| 30 |
+
"protenix_chain": "C",
|
| 31 |
+
"original_chain": "L",
|
| 32 |
+
"seq_len": 214,
|
| 33 |
+
"entity_type": "proteinChain"
|
| 34 |
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}
|
| 35 |
+
]
|
| 36 |
+
},
|
| 37 |
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"cdr_info": {
|
| 38 |
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"H_chain": {
|
| 39 |
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"cdr_indices": [
|
| 40 |
+
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|
| 41 |
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|
| 42 |
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|
| 43 |
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|
| 44 |
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|
| 45 |
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|
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|
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|
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|
| 53 |
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|
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|
| 56 |
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|
| 57 |
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|
| 58 |
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|
| 59 |
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|
| 60 |
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|
| 61 |
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|
| 62 |
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|
| 63 |
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|
| 64 |
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"variable_domain_start_res_id": 1,
|
| 65 |
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|
| 66 |
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|
| 67 |
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|
| 68 |
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|
| 69 |
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|
| 70 |
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|
| 71 |
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|
| 72 |
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|
| 73 |
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|
| 74 |
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|
| 75 |
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|
| 76 |
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|
| 77 |
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|
| 78 |
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|
| 79 |
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|
| 80 |
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|
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|
| 82 |
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|
| 83 |
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|
| 84 |
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|
| 85 |
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|
| 86 |
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|
| 87 |
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|
| 88 |
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|
| 89 |
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|
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|
| 91 |
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|
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|
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|
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|
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|
| 96 |
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|
| 97 |
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|
| 98 |
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|
| 99 |
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|
| 100 |
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|
| 101 |
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|
| 102 |
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|
| 103 |
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|
| 104 |
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|
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|
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|
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|
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|
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|
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|
| 112 |
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|
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|
| 114 |
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|
| 115 |
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|
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|
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|
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|
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|
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|
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|
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|
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|
| 128 |
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|
| 129 |
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|
| 130 |
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|
| 131 |
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|
| 132 |
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|
| 133 |
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|
| 134 |
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|
| 135 |
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|
| 136 |
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|
| 137 |
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|
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|
| 139 |
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|
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|
| 141 |
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|
| 142 |
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|
| 143 |
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|
| 144 |
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|
| 145 |
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|
| 146 |
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|
| 147 |
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|
| 148 |
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|
| 149 |
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|
| 150 |
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|
| 151 |
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|
| 152 |
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|
| 153 |
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|
| 154 |
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|
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|
| 156 |
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|
| 157 |
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|
| 158 |
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|
| 159 |
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|
| 160 |
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|
| 161 |
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|
| 162 |
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|
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|
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|
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|
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|
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|
| 168 |
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|
| 169 |
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|
| 170 |
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}
|
| 171 |
+
}
|
| 172 |
+
}
|
| 173 |
+
}
|
cdr_info/8tg9_H_L_A_cdr_info.json
ADDED
|
@@ -0,0 +1,181 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
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|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
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|
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|
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|
|
|
|
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|
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|
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|
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|
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|
|
|
|
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|
|
|
|
|
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|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
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|
|
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|
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|
|
|
|
|
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|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"entry_name": "8tg9_H_L_A",
|
| 3 |
+
"heavy_chain_id": "H",
|
| 4 |
+
"light_chain_id": "L",
|
| 5 |
+
"chain_mapping": {
|
| 6 |
+
"protenix_to_original": {
|
| 7 |
+
"A": "A",
|
| 8 |
+
"B": "H",
|
| 9 |
+
"C": "L"
|
| 10 |
+
},
|
| 11 |
+
"original_to_protenix": {
|
| 12 |
+
"A": "A",
|
| 13 |
+
"H": "B",
|
| 14 |
+
"L": "C"
|
| 15 |
+
},
|
| 16 |
+
"sequence_order": [
|
| 17 |
+
{
|
| 18 |
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"protenix_chain": "A",
|
| 19 |
+
"original_chain": "A",
|
| 20 |
+
"seq_len": 469,
|
| 21 |
+
"entity_type": "proteinChain"
|
| 22 |
+
},
|
| 23 |
+
{
|
| 24 |
+
"protenix_chain": "B",
|
| 25 |
+
"original_chain": "H",
|
| 26 |
+
"seq_len": 229,
|
| 27 |
+
"entity_type": "proteinChain"
|
| 28 |
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},
|
| 29 |
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{
|
| 30 |
+
"protenix_chain": "C",
|
| 31 |
+
"original_chain": "L",
|
| 32 |
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"seq_len": 213,
|
| 33 |
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"entity_type": "proteinChain"
|
| 34 |
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}
|
| 35 |
+
]
|
| 36 |
+
},
|
| 37 |
+
"cdr_info": {
|
| 38 |
+
"H_chain": {
|
| 39 |
+
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|
| 40 |
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|
| 41 |
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|
| 42 |
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|
| 43 |
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|
| 44 |
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|
| 45 |
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|
| 46 |
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|
| 47 |
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|
| 48 |
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|
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|
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|
| 51 |
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|
| 52 |
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|
| 53 |
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|
| 54 |
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|
| 55 |
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|
| 56 |
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|
| 57 |
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|
| 58 |
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|
| 59 |
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|
| 60 |
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|
| 61 |
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|
| 62 |
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|
| 63 |
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|
| 64 |
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|
| 65 |
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|
| 66 |
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|
| 67 |
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|
| 68 |
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],
|
| 69 |
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"variable_domain_start_res_id": 1,
|
| 70 |
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|
| 71 |
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"indices": [
|
| 72 |
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|
| 73 |
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|
| 74 |
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|
| 75 |
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|
| 76 |
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|
| 77 |
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|
| 78 |
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|
| 79 |
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|
| 80 |
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|
| 81 |
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|
| 82 |
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|
| 83 |
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|
| 84 |
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|
| 85 |
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|
| 86 |
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|
| 87 |
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|
| 88 |
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|
| 89 |
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|
| 90 |
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|
| 91 |
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|
| 92 |
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|
| 93 |
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|
| 94 |
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|
| 95 |
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
| 105 |
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|
| 106 |
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|
| 107 |
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|
| 108 |
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|
| 109 |
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|
| 110 |
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|
| 111 |
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|
| 112 |
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|
| 113 |
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|
| 114 |
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|
| 115 |
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|
| 116 |
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|
| 117 |
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|
| 118 |
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|
| 119 |
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|
| 120 |
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|
| 121 |
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|
| 122 |
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|
| 123 |
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|
| 124 |
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|
| 125 |
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|
| 126 |
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|
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|
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|
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|
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|
| 131 |
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|
| 132 |
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|
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|
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|
| 135 |
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|
| 136 |
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|
| 137 |
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|
| 138 |
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|
| 139 |
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|
| 140 |
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|
| 141 |
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|
| 142 |
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|
| 143 |
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|
| 144 |
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|
| 145 |
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|
| 146 |
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|
| 147 |
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|
| 148 |
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|
| 149 |
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|
| 150 |
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|
| 151 |
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|
| 152 |
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32,
|
| 153 |
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|
| 154 |
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|
| 155 |
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|
| 156 |
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|
| 157 |
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|
| 158 |
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|
| 159 |
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|
| 160 |
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|
| 161 |
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|
| 162 |
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|
| 163 |
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|
| 164 |
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|
| 165 |
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|
| 166 |
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|
| 167 |
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|
| 168 |
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|
| 169 |
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|
| 170 |
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|
| 171 |
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|
| 172 |
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|
| 173 |
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|
| 174 |
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|
| 175 |
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|
| 176 |
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|
| 177 |
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|
| 178 |
+
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|
| 179 |
+
}
|
| 180 |
+
}
|
| 181 |
+
}
|
cdr_info/8tga_E_F_B_cdr_info.json
ADDED
|
@@ -0,0 +1,181 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"entry_name": "8tga_E_F_B",
|
| 3 |
+
"heavy_chain_id": "E",
|
| 4 |
+
"light_chain_id": "F",
|
| 5 |
+
"chain_mapping": {
|
| 6 |
+
"protenix_to_original": {
|
| 7 |
+
"A": "B",
|
| 8 |
+
"B": "F",
|
| 9 |
+
"C": "E"
|
| 10 |
+
},
|
| 11 |
+
"original_to_protenix": {
|
| 12 |
+
"B": "A",
|
| 13 |
+
"F": "B",
|
| 14 |
+
"E": "C"
|
| 15 |
+
},
|
| 16 |
+
"sequence_order": [
|
| 17 |
+
{
|
| 18 |
+
"protenix_chain": "A",
|
| 19 |
+
"original_chain": "B",
|
| 20 |
+
"seq_len": 469,
|
| 21 |
+
"entity_type": "proteinChain"
|
| 22 |
+
},
|
| 23 |
+
{
|
| 24 |
+
"protenix_chain": "B",
|
| 25 |
+
"original_chain": "F",
|
| 26 |
+
"seq_len": 213,
|
| 27 |
+
"entity_type": "proteinChain"
|
| 28 |
+
},
|
| 29 |
+
{
|
| 30 |
+
"protenix_chain": "C",
|
| 31 |
+
"original_chain": "E",
|
| 32 |
+
"seq_len": 229,
|
| 33 |
+
"entity_type": "proteinChain"
|
| 34 |
+
}
|
| 35 |
+
]
|
| 36 |
+
},
|
| 37 |
+
"cdr_info": {
|
| 38 |
+
"H_chain": {
|
| 39 |
+
"cdr_indices": [
|
| 40 |
+
25,
|
| 41 |
+
26,
|
| 42 |
+
27,
|
| 43 |
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|
| 44 |
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|
| 45 |
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|
| 46 |
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|
| 47 |
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|
| 48 |
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|
| 49 |
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|
| 50 |
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54,
|
| 51 |
+
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|
| 52 |
+
56,
|
| 53 |
+
98,
|
| 54 |
+
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|
| 55 |
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100,
|
| 56 |
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101,
|
| 57 |
+
102,
|
| 58 |
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103,
|
| 59 |
+
104,
|
| 60 |
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105,
|
| 61 |
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106,
|
| 62 |
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107,
|
| 63 |
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108,
|
| 64 |
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109,
|
| 65 |
+
110,
|
| 66 |
+
111,
|
| 67 |
+
112
|
| 68 |
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],
|
| 69 |
+
"variable_domain_start_res_id": 1,
|
| 70 |
+
"cdr1": {
|
| 71 |
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"indices": [
|
| 72 |
+
25,
|
| 73 |
+
26,
|
| 74 |
+
27,
|
| 75 |
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28,
|
| 76 |
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29,
|
| 77 |
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30,
|
| 78 |
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31
|
| 79 |
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]
|
| 80 |
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},
|
| 81 |
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"cdr2": {
|
| 82 |
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"indices": [
|
| 83 |
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51,
|
| 84 |
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52,
|
| 85 |
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|
| 86 |
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54,
|
| 87 |
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55,
|
| 88 |
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56
|
| 89 |
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|
| 90 |
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},
|
| 91 |
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"cdr3": {
|
| 92 |
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|
| 93 |
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98,
|
| 94 |
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|
| 95 |
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|
| 96 |
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|
| 97 |
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|
| 98 |
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|
| 99 |
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|
| 100 |
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|
| 101 |
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106,
|
| 102 |
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|
| 103 |
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108,
|
| 104 |
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109,
|
| 105 |
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110,
|
| 106 |
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111,
|
| 107 |
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112
|
| 108 |
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|
| 109 |
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}
|
| 110 |
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},
|
| 111 |
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"L_chain": {
|
| 112 |
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|
| 113 |
+
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|
| 114 |
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|
| 115 |
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|
| 116 |
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|
| 117 |
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27,
|
| 118 |
+
28,
|
| 119 |
+
29,
|
| 120 |
+
30,
|
| 121 |
+
31,
|
| 122 |
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32,
|
| 123 |
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|
| 124 |
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|
| 125 |
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|
| 126 |
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|
| 127 |
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|
| 128 |
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|
| 129 |
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|
| 130 |
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|
| 131 |
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|
| 132 |
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|
| 133 |
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|
| 134 |
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|
| 135 |
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92,
|
| 136 |
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93,
|
| 137 |
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94,
|
| 138 |
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95
|
| 139 |
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|
| 140 |
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"variable_domain_start_res_id": 1,
|
| 141 |
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|
| 142 |
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|
| 143 |
+
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|
| 144 |
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|
| 145 |
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|
| 146 |
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|
| 147 |
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|
| 148 |
+
28,
|
| 149 |
+
29,
|
| 150 |
+
30,
|
| 151 |
+
31,
|
| 152 |
+
32,
|
| 153 |
+
33
|
| 154 |
+
]
|
| 155 |
+
},
|
| 156 |
+
"cdr2": {
|
| 157 |
+
"indices": [
|
| 158 |
+
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|
| 159 |
+
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|
| 160 |
+
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|
| 161 |
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52,
|
| 162 |
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|
| 163 |
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54,
|
| 164 |
+
55
|
| 165 |
+
]
|
| 166 |
+
},
|
| 167 |
+
"cdr3": {
|
| 168 |
+
"indices": [
|
| 169 |
+
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|
| 170 |
+
89,
|
| 171 |
+
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|
| 172 |
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|
| 173 |
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|
| 174 |
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|
| 175 |
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|
| 176 |
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95
|
| 177 |
+
]
|
| 178 |
+
}
|
| 179 |
+
}
|
| 180 |
+
}
|
| 181 |
+
}
|
cdr_info/8tkc_G_H_AB_cdr_info.json
ADDED
|
@@ -0,0 +1,201 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"entry_name": "8tkc_G_H_AB",
|
| 3 |
+
"heavy_chain_id": "G",
|
| 4 |
+
"light_chain_id": "H",
|
| 5 |
+
"chain_mapping": {
|
| 6 |
+
"protenix_to_original": {
|
| 7 |
+
"A": "A",
|
| 8 |
+
"B": "B",
|
| 9 |
+
"C": "G",
|
| 10 |
+
"D": "H"
|
| 11 |
+
},
|
| 12 |
+
"original_to_protenix": {
|
| 13 |
+
"A": "A",
|
| 14 |
+
"B": "B",
|
| 15 |
+
"G": "C",
|
| 16 |
+
"H": "D"
|
| 17 |
+
},
|
| 18 |
+
"sequence_order": [
|
| 19 |
+
{
|
| 20 |
+
"protenix_chain": "A",
|
| 21 |
+
"original_chain": "A",
|
| 22 |
+
"seq_len": 481,
|
| 23 |
+
"entity_type": "proteinChain"
|
| 24 |
+
},
|
| 25 |
+
{
|
| 26 |
+
"protenix_chain": "B",
|
| 27 |
+
"original_chain": "B",
|
| 28 |
+
"seq_len": 153,
|
| 29 |
+
"entity_type": "proteinChain"
|
| 30 |
+
},
|
| 31 |
+
{
|
| 32 |
+
"protenix_chain": "C",
|
| 33 |
+
"original_chain": "G",
|
| 34 |
+
"seq_len": 240,
|
| 35 |
+
"entity_type": "proteinChain"
|
| 36 |
+
},
|
| 37 |
+
{
|
| 38 |
+
"protenix_chain": "D",
|
| 39 |
+
"original_chain": "H",
|
| 40 |
+
"seq_len": 214,
|
| 41 |
+
"entity_type": "proteinChain"
|
| 42 |
+
}
|
| 43 |
+
]
|
| 44 |
+
},
|
| 45 |
+
"cdr_info": {
|
| 46 |
+
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|
| 47 |
+
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|
| 48 |
+
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|
| 49 |
+
26,
|
| 50 |
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|
| 51 |
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|
| 52 |
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|
| 53 |
+
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|
| 54 |
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31,
|
| 55 |
+
32,
|
| 56 |
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52,
|
| 57 |
+
53,
|
| 58 |
+
54,
|
| 59 |
+
55,
|
| 60 |
+
56,
|
| 61 |
+
57,
|
| 62 |
+
99,
|
| 63 |
+
100,
|
| 64 |
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101,
|
| 65 |
+
102,
|
| 66 |
+
103,
|
| 67 |
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104,
|
| 68 |
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105,
|
| 69 |
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|
| 70 |
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|
| 71 |
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|
| 72 |
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|
| 73 |
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|
| 74 |
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111,
|
| 75 |
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112,
|
| 76 |
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113,
|
| 77 |
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114,
|
| 78 |
+
115,
|
| 79 |
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116,
|
| 80 |
+
117
|
| 81 |
+
],
|
| 82 |
+
"variable_domain_start_res_id": 1,
|
| 83 |
+
"cdr1": {
|
| 84 |
+
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|
| 85 |
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|
| 86 |
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26,
|
| 87 |
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27,
|
| 88 |
+
28,
|
| 89 |
+
29,
|
| 90 |
+
30,
|
| 91 |
+
31,
|
| 92 |
+
32
|
| 93 |
+
]
|
| 94 |
+
},
|
| 95 |
+
"cdr2": {
|
| 96 |
+
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|
| 97 |
+
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|
| 98 |
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53,
|
| 99 |
+
54,
|
| 100 |
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55,
|
| 101 |
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56,
|
| 102 |
+
57
|
| 103 |
+
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|
| 104 |
+
},
|
| 105 |
+
"cdr3": {
|
| 106 |
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"indices": [
|
| 107 |
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99,
|
| 108 |
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100,
|
| 109 |
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101,
|
| 110 |
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102,
|
| 111 |
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|
| 112 |
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|
| 113 |
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|
| 114 |
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|
| 115 |
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107,
|
| 116 |
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|
| 117 |
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|
| 118 |
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|
| 119 |
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|
| 120 |
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|
| 121 |
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|
| 122 |
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|
| 123 |
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115,
|
| 124 |
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116,
|
| 125 |
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117
|
| 126 |
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|
| 127 |
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}
|
| 128 |
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},
|
| 129 |
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"L_chain": {
|
| 130 |
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|
| 131 |
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23,
|
| 132 |
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24,
|
| 133 |
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|
| 134 |
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26,
|
| 135 |
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|
| 136 |
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|
| 137 |
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|
| 138 |
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|
| 139 |
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31,
|
| 140 |
+
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|
| 141 |
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|
| 142 |
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|
| 143 |
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|
| 144 |
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|
| 145 |
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|
| 146 |
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|
| 147 |
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|
| 148 |
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|
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|
| 150 |
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|
| 151 |
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|
| 152 |
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|
| 153 |
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|
| 154 |
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|
| 155 |
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|
| 156 |
+
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|
| 157 |
+
96
|
| 158 |
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],
|
| 159 |
+
"variable_domain_start_res_id": 1,
|
| 160 |
+
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|
| 161 |
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|
| 162 |
+
23,
|
| 163 |
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|
| 164 |
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|
| 165 |
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|
| 166 |
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|
| 167 |
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|
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|
| 169 |
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|
| 170 |
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|
| 171 |
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|
| 172 |
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|
| 173 |
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|
| 174 |
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|
| 175 |
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"cdr2": {
|
| 176 |
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|
| 177 |
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|
| 178 |
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|
| 179 |
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|
| 180 |
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|
| 181 |
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|
| 182 |
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|
| 183 |
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|
| 184 |
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|
| 185 |
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|
| 186 |
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|
| 187 |
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|
| 188 |
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|
| 189 |
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|
| 190 |
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|
| 191 |
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|
| 192 |
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|
| 193 |
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|
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|
| 195 |
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|
| 196 |
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|
| 197 |
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|
| 198 |
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|
| 199 |
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}
|
| 200 |
+
}
|
| 201 |
+
}
|
cdr_info/8tnj_D_C_A_cdr_info.json
ADDED
|
@@ -0,0 +1,181 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"entry_name": "8tnj_D_C_A",
|
| 3 |
+
"heavy_chain_id": "D",
|
| 4 |
+
"light_chain_id": "C",
|
| 5 |
+
"chain_mapping": {
|
| 6 |
+
"protenix_to_original": {
|
| 7 |
+
"A": "A",
|
| 8 |
+
"B": "C",
|
| 9 |
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"C": "D"
|
| 10 |
+
},
|
| 11 |
+
"original_to_protenix": {
|
| 12 |
+
"A": "A",
|
| 13 |
+
"C": "B",
|
| 14 |
+
"D": "C"
|
| 15 |
+
},
|
| 16 |
+
"sequence_order": [
|
| 17 |
+
{
|
| 18 |
+
"protenix_chain": "A",
|
| 19 |
+
"original_chain": "A",
|
| 20 |
+
"seq_len": 439,
|
| 21 |
+
"entity_type": "proteinChain"
|
| 22 |
+
},
|
| 23 |
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{
|
| 24 |
+
"protenix_chain": "B",
|
| 25 |
+
"original_chain": "C",
|
| 26 |
+
"seq_len": 216,
|
| 27 |
+
"entity_type": "proteinChain"
|
| 28 |
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},
|
| 29 |
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{
|
| 30 |
+
"protenix_chain": "C",
|
| 31 |
+
"original_chain": "D",
|
| 32 |
+
"seq_len": 232,
|
| 33 |
+
"entity_type": "proteinChain"
|
| 34 |
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}
|
| 35 |
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]
|
| 36 |
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},
|
| 37 |
+
"cdr_info": {
|
| 38 |
+
"H_chain": {
|
| 39 |
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"cdr_indices": [
|
| 40 |
+
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|
| 41 |
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26,
|
| 42 |
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|
| 43 |
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|
| 44 |
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|
| 45 |
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|
| 46 |
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|
| 47 |
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|
| 48 |
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|
| 49 |
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|
| 50 |
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|
| 51 |
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|
| 52 |
+
56,
|
| 53 |
+
98,
|
| 54 |
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|
| 55 |
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|
| 56 |
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|
| 57 |
+
102,
|
| 58 |
+
103,
|
| 59 |
+
104,
|
| 60 |
+
105,
|
| 61 |
+
106,
|
| 62 |
+
107,
|
| 63 |
+
108,
|
| 64 |
+
109
|
| 65 |
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],
|
| 66 |
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"variable_domain_start_res_id": 4,
|
| 67 |
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"cdr1": {
|
| 68 |
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"indices": [
|
| 69 |
+
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|
| 70 |
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26,
|
| 71 |
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27,
|
| 72 |
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|
| 73 |
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29,
|
| 74 |
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|
| 75 |
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31
|
| 76 |
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|
| 77 |
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|
| 78 |
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|
| 79 |
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|
| 80 |
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|
| 81 |
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|
| 82 |
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|
| 83 |
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|
| 84 |
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|
| 85 |
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|
| 86 |
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|
| 87 |
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|
| 88 |
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|
| 89 |
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|
| 90 |
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|
| 91 |
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
| 102 |
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|
| 103 |
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|
| 104 |
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|
| 105 |
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|
| 106 |
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|
| 107 |
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|
| 108 |
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|
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|
| 110 |
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
| 136 |
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|
| 137 |
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|
| 138 |
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|
| 139 |
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|
| 140 |
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|
| 141 |
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|
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|
| 143 |
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|
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|
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|
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|
| 147 |
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|
| 148 |
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|
| 149 |
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|
| 150 |
+
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|
| 151 |
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|
| 152 |
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|
| 153 |
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"cdr2": {
|
| 154 |
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|
| 155 |
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|
| 156 |
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|
| 157 |
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|
| 158 |
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|
| 159 |
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|
| 160 |
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|
| 161 |
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|
| 162 |
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|
| 163 |
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|
| 164 |
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"cdr3": {
|
| 165 |
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|
| 166 |
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|
| 167 |
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|
| 168 |
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|
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|
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|
| 171 |
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|
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|
| 173 |
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|
| 174 |
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|
| 175 |
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|
| 176 |
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|
| 177 |
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|
| 178 |
+
}
|
| 179 |
+
}
|
| 180 |
+
}
|
| 181 |
+
}
|
cdr_info/8to9_D_F_A_cdr_info.json
ADDED
|
@@ -0,0 +1,189 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
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|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
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|
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|
|
|
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|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
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|
|
|
|
|
|
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|
|
|
|
|
|
|
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|
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|
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|
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|
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|
|
|
|
|
|
|
|
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|
|
|
|
|
|
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|
|
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|
|
|
|
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|
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|
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|
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|
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|
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|
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|
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|
|
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|
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|
|
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|
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|
|
|
|
|
|
|
|
|
|
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|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
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|
|
|
|
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|
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|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"entry_name": "8to9_D_F_A",
|
| 3 |
+
"heavy_chain_id": "D",
|
| 4 |
+
"light_chain_id": "F",
|
| 5 |
+
"chain_mapping": {
|
| 6 |
+
"protenix_to_original": {
|
| 7 |
+
"A": "A",
|
| 8 |
+
"B": "D",
|
| 9 |
+
"C": "F"
|
| 10 |
+
},
|
| 11 |
+
"original_to_protenix": {
|
| 12 |
+
"A": "A",
|
| 13 |
+
"D": "B",
|
| 14 |
+
"F": "C"
|
| 15 |
+
},
|
| 16 |
+
"sequence_order": [
|
| 17 |
+
{
|
| 18 |
+
"protenix_chain": "A",
|
| 19 |
+
"original_chain": "A",
|
| 20 |
+
"seq_len": 463,
|
| 21 |
+
"entity_type": "proteinChain"
|
| 22 |
+
},
|
| 23 |
+
{
|
| 24 |
+
"protenix_chain": "B",
|
| 25 |
+
"original_chain": "D",
|
| 26 |
+
"seq_len": 126,
|
| 27 |
+
"entity_type": "proteinChain"
|
| 28 |
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},
|
| 29 |
+
{
|
| 30 |
+
"protenix_chain": "C",
|
| 31 |
+
"original_chain": "F",
|
| 32 |
+
"seq_len": 107,
|
| 33 |
+
"entity_type": "proteinChain"
|
| 34 |
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}
|
| 35 |
+
]
|
| 36 |
+
},
|
| 37 |
+
"cdr_info": {
|
| 38 |
+
"H_chain": {
|
| 39 |
+
"cdr_indices": [
|
| 40 |
+
24,
|
| 41 |
+
25,
|
| 42 |
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26,
|
| 43 |
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27,
|
| 44 |
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|
| 45 |
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|
| 46 |
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|
| 47 |
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|
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|
| 53 |
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|
| 54 |
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|
| 55 |
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|
| 56 |
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|
| 57 |
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|
| 58 |
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|
| 59 |
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|
| 60 |
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|
| 61 |
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|
| 62 |
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|
| 63 |
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|
| 64 |
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|
| 65 |
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|
| 66 |
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|
| 67 |
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|
| 68 |
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|
| 69 |
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|
| 70 |
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|
| 71 |
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|
| 72 |
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|
| 73 |
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|
| 74 |
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|
| 75 |
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|
| 76 |
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|
| 77 |
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|
| 78 |
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| 79 |
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|
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| 81 |
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|
| 82 |
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|
| 83 |
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|
| 84 |
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|
| 85 |
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|
| 86 |
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|
| 87 |
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|
| 93 |
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|
| 94 |
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|
| 95 |
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|
| 96 |
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|
| 97 |
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|
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|
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|
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|
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|
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|
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| 110 |
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|
| 111 |
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|
| 112 |
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|
| 113 |
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|
| 114 |
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|
| 115 |
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|
| 116 |
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|
| 117 |
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|
| 118 |
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|
| 119 |
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|
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|
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|
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| 131 |
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|
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|
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|
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|
| 144 |
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|
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|
| 146 |
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|
| 147 |
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"variable_domain_start_res_id": 1,
|
| 148 |
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|
| 149 |
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|
| 150 |
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|
| 151 |
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|
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|
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|
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|
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|
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|
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|
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|
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|
| 161 |
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|
| 162 |
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|
| 163 |
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|
| 164 |
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|
| 165 |
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|
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|
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|
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|
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|
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|
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|
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|
| 173 |
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|
| 174 |
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|
| 175 |
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|
| 176 |
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|
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|
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|
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|
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|
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|
| 185 |
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|
| 186 |
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|
| 187 |
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}
|
| 188 |
+
}
|
| 189 |
+
}
|
cdr_info/8tp4_H_L_C_cdr_info.json
ADDED
|
@@ -0,0 +1,207 @@
|
|
|
|
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|
|
|
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|
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|
|
|
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|
|
|
|
|
|
|
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|
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|
|
|
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|
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|
|
|
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|
|
|
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|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
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|
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|
|
|
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|
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|
|
|
| 1 |
+
{
|
| 2 |
+
"entry_name": "8tp4_H_L_C",
|
| 3 |
+
"heavy_chain_id": "H",
|
| 4 |
+
"light_chain_id": "L",
|
| 5 |
+
"chain_mapping": {
|
| 6 |
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"protenix_to_original": {
|
| 7 |
+
"A": "C",
|
| 8 |
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"B": "H",
|
| 9 |
+
"C": "L"
|
| 10 |
+
},
|
| 11 |
+
"original_to_protenix": {
|
| 12 |
+
"C": "A",
|
| 13 |
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"H": "B",
|
| 14 |
+
"L": "C"
|
| 15 |
+
},
|
| 16 |
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"sequence_order": [
|
| 17 |
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{
|
| 18 |
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"protenix_chain": "A",
|
| 19 |
+
"original_chain": "C",
|
| 20 |
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"seq_len": 506,
|
| 21 |
+
"entity_type": "proteinChain"
|
| 22 |
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},
|
| 23 |
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{
|
| 24 |
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"protenix_chain": "B",
|
| 25 |
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"original_chain": "H",
|
| 26 |
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"seq_len": 130,
|
| 27 |
+
"entity_type": "proteinChain"
|
| 28 |
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},
|
| 29 |
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{
|
| 30 |
+
"protenix_chain": "C",
|
| 31 |
+
"original_chain": "L",
|
| 32 |
+
"seq_len": 125,
|
| 33 |
+
"entity_type": "proteinChain"
|
| 34 |
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}
|
| 35 |
+
]
|
| 36 |
+
},
|
| 37 |
+
"cdr_info": {
|
| 38 |
+
"H_chain": {
|
| 39 |
+
"cdr_indices": [
|
| 40 |
+
25,
|
| 41 |
+
26,
|
| 42 |
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|
| 43 |
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|
| 44 |
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|
| 45 |
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|
| 46 |
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|
| 47 |
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|
| 48 |
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|
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|
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|
| 51 |
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|
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|
| 53 |
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|
| 54 |
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|
| 55 |
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|
| 56 |
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|
| 57 |
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|
| 58 |
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|
| 59 |
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|
| 60 |
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|
| 61 |
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|
| 62 |
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|
| 63 |
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|
| 64 |
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|
| 65 |
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|
| 66 |
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|
| 67 |
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|
| 68 |
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|
| 69 |
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|
| 70 |
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|
| 71 |
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116,
|
| 72 |
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|
| 73 |
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|
| 74 |
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],
|
| 75 |
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"variable_domain_start_res_id": 1,
|
| 76 |
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|
| 77 |
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|
| 78 |
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|
| 79 |
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|
| 80 |
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|
| 81 |
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|
| 82 |
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|
| 83 |
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|
| 84 |
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|
| 85 |
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|
| 86 |
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},
|
| 87 |
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"cdr2": {
|
| 88 |
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|
| 89 |
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|
| 90 |
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|
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|
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|
| 93 |
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|
| 94 |
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|
| 95 |
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|
| 96 |
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|
| 97 |
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|
| 98 |
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|
| 99 |
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|
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|
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|
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|
| 103 |
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|
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|
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|
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|
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|
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|
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|
| 110 |
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|
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|
| 112 |
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|
| 113 |
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|
| 114 |
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|
| 115 |
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|
| 116 |
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|
| 117 |
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116,
|
| 118 |
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117,
|
| 119 |
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118
|
| 120 |
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|
| 121 |
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}
|
| 122 |
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|
| 123 |
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|
| 124 |
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|
| 125 |
+
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|
| 126 |
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|
| 127 |
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|
| 128 |
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|
| 129 |
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|
| 130 |
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|
| 131 |
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|
| 132 |
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|
| 133 |
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|
| 134 |
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|
| 135 |
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|
| 136 |
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|
| 137 |
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|
| 138 |
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|
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|
| 140 |
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|
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|
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|
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|
| 144 |
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|
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|
| 146 |
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|
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|
| 148 |
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|
| 149 |
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|
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|
| 151 |
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|
| 152 |
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|
| 153 |
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|
| 154 |
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|
| 155 |
+
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|
| 156 |
+
100,
|
| 157 |
+
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|
| 158 |
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|
| 159 |
+
"variable_domain_start_res_id": 1,
|
| 160 |
+
"cdr1": {
|
| 161 |
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"indices": [
|
| 162 |
+
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|
| 163 |
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23,
|
| 164 |
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|
| 165 |
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|
| 166 |
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|
| 167 |
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|
| 168 |
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|
| 169 |
+
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|
| 170 |
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|
| 171 |
+
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|
| 172 |
+
32,
|
| 173 |
+
33,
|
| 174 |
+
34,
|
| 175 |
+
35
|
| 176 |
+
]
|
| 177 |
+
},
|
| 178 |
+
"cdr2": {
|
| 179 |
+
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|
| 180 |
+
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|
| 181 |
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|
| 182 |
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53,
|
| 183 |
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|
| 184 |
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55,
|
| 185 |
+
56,
|
| 186 |
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57
|
| 187 |
+
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|
| 188 |
+
},
|
| 189 |
+
"cdr3": {
|
| 190 |
+
"indices": [
|
| 191 |
+
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|
| 192 |
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91,
|
| 193 |
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|
| 194 |
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93,
|
| 195 |
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|
| 196 |
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|
| 197 |
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|
| 198 |
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|
| 199 |
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98,
|
| 200 |
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99,
|
| 201 |
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100,
|
| 202 |
+
101
|
| 203 |
+
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|
| 204 |
+
}
|
| 205 |
+
}
|
| 206 |
+
}
|
| 207 |
+
}
|
cdr_info/8tp5_E_F_C_cdr_info.json
ADDED
|
@@ -0,0 +1,207 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
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|
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|
|
|
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|
|
|
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|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
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|
|
|
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|
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|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
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|
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|
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|
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|
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|
|
| 1 |
+
{
|
| 2 |
+
"entry_name": "8tp5_E_F_C",
|
| 3 |
+
"heavy_chain_id": "E",
|
| 4 |
+
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|
| 5 |
+
"chain_mapping": {
|
| 6 |
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"protenix_to_original": {
|
| 7 |
+
"A": "C",
|
| 8 |
+
"B": "E",
|
| 9 |
+
"C": "F"
|
| 10 |
+
},
|
| 11 |
+
"original_to_protenix": {
|
| 12 |
+
"C": "A",
|
| 13 |
+
"E": "B",
|
| 14 |
+
"F": "C"
|
| 15 |
+
},
|
| 16 |
+
"sequence_order": [
|
| 17 |
+
{
|
| 18 |
+
"protenix_chain": "A",
|
| 19 |
+
"original_chain": "C",
|
| 20 |
+
"seq_len": 322,
|
| 21 |
+
"entity_type": "proteinChain"
|
| 22 |
+
},
|
| 23 |
+
{
|
| 24 |
+
"protenix_chain": "B",
|
| 25 |
+
"original_chain": "E",
|
| 26 |
+
"seq_len": 130,
|
| 27 |
+
"entity_type": "proteinChain"
|
| 28 |
+
},
|
| 29 |
+
{
|
| 30 |
+
"protenix_chain": "C",
|
| 31 |
+
"original_chain": "F",
|
| 32 |
+
"seq_len": 112,
|
| 33 |
+
"entity_type": "proteinChain"
|
| 34 |
+
}
|
| 35 |
+
]
|
| 36 |
+
},
|
| 37 |
+
"cdr_info": {
|
| 38 |
+
"H_chain": {
|
| 39 |
+
"cdr_indices": [
|
| 40 |
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|
| 41 |
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|
| 42 |
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|
| 43 |
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|
| 44 |
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|
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|
| 55 |
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|
| 56 |
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|
| 57 |
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|
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|
| 59 |
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|
| 60 |
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|
| 61 |
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|
| 62 |
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|
| 63 |
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|
| 64 |
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|
| 65 |
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|
| 66 |
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|
| 67 |
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|
| 68 |
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|
| 69 |
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|
| 70 |
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|
| 71 |
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116,
|
| 72 |
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117,
|
| 73 |
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118
|
| 74 |
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|
| 75 |
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"variable_domain_start_res_id": 1,
|
| 76 |
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|
| 77 |
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|
| 78 |
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|
| 79 |
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|
| 80 |
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|
| 81 |
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|
| 82 |
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|
| 83 |
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|
| 84 |
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31
|
| 85 |
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|
| 86 |
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},
|
| 87 |
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"cdr2": {
|
| 88 |
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|
| 89 |
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|
| 90 |
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|
| 91 |
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|
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|
| 93 |
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|
| 94 |
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|
| 95 |
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|
| 96 |
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|
| 97 |
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|
| 98 |
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|
| 99 |
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|
| 100 |
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|
| 101 |
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|
| 102 |
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|
| 103 |
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|
| 104 |
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|
| 105 |
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|
| 106 |
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|
| 107 |
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|
| 108 |
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|
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|
| 110 |
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|
| 111 |
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|
| 112 |
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|
| 113 |
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|
| 114 |
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|
| 115 |
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|
| 116 |
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|
| 117 |
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|
| 118 |
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117,
|
| 119 |
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118
|
| 120 |
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|
| 121 |
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|
| 122 |
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|
| 123 |
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|
| 124 |
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|
| 125 |
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|
| 126 |
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|
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|
| 128 |
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|
| 129 |
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|
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|
| 131 |
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|
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|
| 133 |
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|
| 134 |
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
| 154 |
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|
| 155 |
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|
| 156 |
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|
| 157 |
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|
| 158 |
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|
| 159 |
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|
| 160 |
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|
| 161 |
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|
| 162 |
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|
| 163 |
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|
| 164 |
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|
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|
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|
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|
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|
| 169 |
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|
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|
| 171 |
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|
| 172 |
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|
| 173 |
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|
| 174 |
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|
| 175 |
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|
| 176 |
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|
| 177 |
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|
| 178 |
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|
| 179 |
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|
| 180 |
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|
| 181 |
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|
| 182 |
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|
| 183 |
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|
| 184 |
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|
| 185 |
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|
| 186 |
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|
| 187 |
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|
| 188 |
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|
| 189 |
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"cdr3": {
|
| 190 |
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|
| 191 |
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|
| 192 |
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|
| 193 |
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|
| 194 |
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|
| 195 |
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|
| 196 |
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|
| 197 |
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|
| 198 |
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|
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|
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|
| 201 |
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|
| 202 |
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|
| 203 |
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|
| 204 |
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|
| 205 |
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}
|
| 206 |
+
}
|
| 207 |
+
}
|
cdr_info/8tq7_F_G_C_cdr_info.json
ADDED
|
@@ -0,0 +1,169 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"entry_name": "8tq7_F_G_C",
|
| 3 |
+
"heavy_chain_id": "F",
|
| 4 |
+
"light_chain_id": "G",
|
| 5 |
+
"chain_mapping": {
|
| 6 |
+
"protenix_to_original": {
|
| 7 |
+
"A": "C",
|
| 8 |
+
"B": "F",
|
| 9 |
+
"C": "G"
|
| 10 |
+
},
|
| 11 |
+
"original_to_protenix": {
|
| 12 |
+
"C": "A",
|
| 13 |
+
"F": "B",
|
| 14 |
+
"G": "C"
|
| 15 |
+
},
|
| 16 |
+
"sequence_order": [
|
| 17 |
+
{
|
| 18 |
+
"protenix_chain": "A",
|
| 19 |
+
"original_chain": "C",
|
| 20 |
+
"seq_len": 273,
|
| 21 |
+
"entity_type": "proteinChain"
|
| 22 |
+
},
|
| 23 |
+
{
|
| 24 |
+
"protenix_chain": "B",
|
| 25 |
+
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|
| 26 |
+
"seq_len": 215,
|
| 27 |
+
"entity_type": "proteinChain"
|
| 28 |
+
},
|
| 29 |
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{
|
| 30 |
+
"protenix_chain": "C",
|
| 31 |
+
"original_chain": "G",
|
| 32 |
+
"seq_len": 213,
|
| 33 |
+
"entity_type": "proteinChain"
|
| 34 |
+
}
|
| 35 |
+
]
|
| 36 |
+
},
|
| 37 |
+
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|
| 38 |
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|
| 39 |
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|
| 40 |
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|
| 41 |
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
| 58 |
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|
| 59 |
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104,
|
| 60 |
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|
| 61 |
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|
| 62 |
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"variable_domain_start_res_id": 1,
|
| 63 |
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|
| 64 |
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|
| 65 |
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|
| 66 |
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|
| 67 |
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|
| 68 |
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|
| 69 |
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|
| 70 |
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|
| 71 |
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|
| 72 |
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|
| 73 |
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|
| 74 |
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|
| 75 |
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|
| 76 |
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|
| 77 |
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|
| 78 |
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|
| 79 |
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54,
|
| 80 |
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|
| 81 |
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56
|
| 82 |
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|
| 83 |
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|
| 84 |
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|
| 85 |
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|
| 86 |
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|
| 87 |
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|
| 88 |
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|
| 89 |
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|
| 90 |
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|
| 91 |
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|
| 92 |
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|
| 93 |
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105
|
| 94 |
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|
| 95 |
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|
| 96 |
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|
| 97 |
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|
| 98 |
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|
| 99 |
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|
| 100 |
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
| 126 |
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|
| 127 |
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"variable_domain_start_res_id": 1,
|
| 128 |
+
"cdr1": {
|
| 129 |
+
"indices": [
|
| 130 |
+
22,
|
| 131 |
+
23,
|
| 132 |
+
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|
| 133 |
+
25,
|
| 134 |
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|
| 135 |
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|
| 136 |
+
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|
| 137 |
+
29,
|
| 138 |
+
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|
| 139 |
+
31,
|
| 140 |
+
32
|
| 141 |
+
]
|
| 142 |
+
},
|
| 143 |
+
"cdr2": {
|
| 144 |
+
"indices": [
|
| 145 |
+
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|
| 146 |
+
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|
| 147 |
+
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|
| 148 |
+
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|
| 149 |
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|
| 150 |
+
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|
| 151 |
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|
| 152 |
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|
| 153 |
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},
|
| 154 |
+
"cdr3": {
|
| 155 |
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|
| 156 |
+
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|
| 157 |
+
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|
| 158 |
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|
| 159 |
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|
| 160 |
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|
| 161 |
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|
| 162 |
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|
| 163 |
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|
| 164 |
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|
| 165 |
+
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|
| 166 |
+
}
|
| 167 |
+
}
|
| 168 |
+
}
|
| 169 |
+
}
|
cdr_info/8tqi_H_L_B_cdr_info.json
ADDED
|
@@ -0,0 +1,175 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"entry_name": "8tqi_H_L_B",
|
| 3 |
+
"heavy_chain_id": "H",
|
| 4 |
+
"light_chain_id": "L",
|
| 5 |
+
"chain_mapping": {
|
| 6 |
+
"protenix_to_original": {
|
| 7 |
+
"A": "B",
|
| 8 |
+
"B": "H",
|
| 9 |
+
"C": "L"
|
| 10 |
+
},
|
| 11 |
+
"original_to_protenix": {
|
| 12 |
+
"B": "A",
|
| 13 |
+
"H": "B",
|
| 14 |
+
"L": "C"
|
| 15 |
+
},
|
| 16 |
+
"sequence_order": [
|
| 17 |
+
{
|
| 18 |
+
"protenix_chain": "A",
|
| 19 |
+
"original_chain": "B",
|
| 20 |
+
"seq_len": 454,
|
| 21 |
+
"entity_type": "proteinChain"
|
| 22 |
+
},
|
| 23 |
+
{
|
| 24 |
+
"protenix_chain": "B",
|
| 25 |
+
"original_chain": "H",
|
| 26 |
+
"seq_len": 223,
|
| 27 |
+
"entity_type": "proteinChain"
|
| 28 |
+
},
|
| 29 |
+
{
|
| 30 |
+
"protenix_chain": "C",
|
| 31 |
+
"original_chain": "L",
|
| 32 |
+
"seq_len": 214,
|
| 33 |
+
"entity_type": "proteinChain"
|
| 34 |
+
}
|
| 35 |
+
]
|
| 36 |
+
},
|
| 37 |
+
"cdr_info": {
|
| 38 |
+
"H_chain": {
|
| 39 |
+
"cdr_indices": [
|
| 40 |
+
25,
|
| 41 |
+
26,
|
| 42 |
+
27,
|
| 43 |
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|
| 44 |
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|
| 45 |
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|
| 46 |
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|
| 47 |
+
51,
|
| 48 |
+
52,
|
| 49 |
+
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|
| 50 |
+
54,
|
| 51 |
+
55,
|
| 52 |
+
56,
|
| 53 |
+
98,
|
| 54 |
+
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|
| 55 |
+
100,
|
| 56 |
+
101,
|
| 57 |
+
102,
|
| 58 |
+
103,
|
| 59 |
+
104,
|
| 60 |
+
105,
|
| 61 |
+
106,
|
| 62 |
+
107,
|
| 63 |
+
108
|
| 64 |
+
],
|
| 65 |
+
"variable_domain_start_res_id": 1,
|
| 66 |
+
"cdr1": {
|
| 67 |
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"indices": [
|
| 68 |
+
25,
|
| 69 |
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26,
|
| 70 |
+
27,
|
| 71 |
+
28,
|
| 72 |
+
29,
|
| 73 |
+
30,
|
| 74 |
+
31
|
| 75 |
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]
|
| 76 |
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},
|
| 77 |
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"cdr2": {
|
| 78 |
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"indices": [
|
| 79 |
+
51,
|
| 80 |
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52,
|
| 81 |
+
53,
|
| 82 |
+
54,
|
| 83 |
+
55,
|
| 84 |
+
56
|
| 85 |
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]
|
| 86 |
+
},
|
| 87 |
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"cdr3": {
|
| 88 |
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"indices": [
|
| 89 |
+
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|
| 90 |
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|
| 91 |
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|
| 92 |
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|
| 93 |
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|
| 94 |
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|
| 95 |
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|
| 96 |
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|
| 97 |
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|
| 98 |
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107,
|
| 99 |
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108
|
| 100 |
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|
| 101 |
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}
|
| 102 |
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},
|
| 103 |
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"L_chain": {
|
| 104 |
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|
| 105 |
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|
| 106 |
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|
| 107 |
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|
| 108 |
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|
| 109 |
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|
| 110 |
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|
| 111 |
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|
| 112 |
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|
| 113 |
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|
| 114 |
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|
| 115 |
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|
| 116 |
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|
| 117 |
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|
| 118 |
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|
| 119 |
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|
| 120 |
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|
| 121 |
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|
| 122 |
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|
| 123 |
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|
| 124 |
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|
| 125 |
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|
| 126 |
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|
| 127 |
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|
| 128 |
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|
| 129 |
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|
| 130 |
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|
| 131 |
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|
| 132 |
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|
| 133 |
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"variable_domain_start_res_id": 1,
|
| 134 |
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|
| 135 |
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|
| 136 |
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|
| 137 |
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|
| 138 |
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|
| 139 |
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|
| 140 |
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|
| 141 |
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|
| 142 |
+
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|
| 143 |
+
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|
| 144 |
+
31,
|
| 145 |
+
32,
|
| 146 |
+
33
|
| 147 |
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]
|
| 148 |
+
},
|
| 149 |
+
"cdr2": {
|
| 150 |
+
"indices": [
|
| 151 |
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|
| 152 |
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|
| 153 |
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|
| 154 |
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|
| 155 |
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|
| 156 |
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|
| 157 |
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|
| 158 |
+
]
|
| 159 |
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},
|
| 160 |
+
"cdr3": {
|
| 161 |
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|
| 162 |
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|
| 163 |
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|
| 164 |
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|
| 165 |
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|
| 166 |
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|
| 167 |
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|
| 168 |
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|
| 169 |
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|
| 170 |
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96
|
| 171 |
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]
|
| 172 |
+
}
|
| 173 |
+
}
|
| 174 |
+
}
|
| 175 |
+
}
|
cdr_info/8tv1_D_E_C_cdr_info.json
ADDED
|
@@ -0,0 +1,193 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
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|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
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|
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|
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|
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|
|
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|
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|
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|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"entry_name": "8tv1_D_E_C",
|
| 3 |
+
"heavy_chain_id": "D",
|
| 4 |
+
"light_chain_id": "E",
|
| 5 |
+
"chain_mapping": {
|
| 6 |
+
"protenix_to_original": {
|
| 7 |
+
"A": "D",
|
| 8 |
+
"B": "E",
|
| 9 |
+
"C": "C"
|
| 10 |
+
},
|
| 11 |
+
"original_to_protenix": {
|
| 12 |
+
"D": "A",
|
| 13 |
+
"E": "B",
|
| 14 |
+
"C": "C"
|
| 15 |
+
},
|
| 16 |
+
"sequence_order": [
|
| 17 |
+
{
|
| 18 |
+
"protenix_chain": "A",
|
| 19 |
+
"original_chain": "D",
|
| 20 |
+
"seq_len": 237,
|
| 21 |
+
"entity_type": "proteinChain"
|
| 22 |
+
},
|
| 23 |
+
{
|
| 24 |
+
"protenix_chain": "B",
|
| 25 |
+
"original_chain": "E",
|
| 26 |
+
"seq_len": 211,
|
| 27 |
+
"entity_type": "proteinChain"
|
| 28 |
+
},
|
| 29 |
+
{
|
| 30 |
+
"protenix_chain": "C",
|
| 31 |
+
"original_chain": "C",
|
| 32 |
+
"seq_len": 308,
|
| 33 |
+
"entity_type": "proteinChain"
|
| 34 |
+
}
|
| 35 |
+
]
|
| 36 |
+
},
|
| 37 |
+
"cdr_info": {
|
| 38 |
+
"H_chain": {
|
| 39 |
+
"cdr_indices": [
|
| 40 |
+
25,
|
| 41 |
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26,
|
| 42 |
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27,
|
| 43 |
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|
| 44 |
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|
| 45 |
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|
| 46 |
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|
| 47 |
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|
| 48 |
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|
| 49 |
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|
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|
| 51 |
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|
| 52 |
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|
| 53 |
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|
| 54 |
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|
| 55 |
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|
| 56 |
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|
| 57 |
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|
| 58 |
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|
| 59 |
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|
| 60 |
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|
| 61 |
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|
| 62 |
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|
| 63 |
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|
| 64 |
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|
| 65 |
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|
| 66 |
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111,
|
| 67 |
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|
| 68 |
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113,
|
| 69 |
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114,
|
| 70 |
+
115,
|
| 71 |
+
116,
|
| 72 |
+
117
|
| 73 |
+
],
|
| 74 |
+
"variable_domain_start_res_id": 1,
|
| 75 |
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|
| 76 |
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|
| 77 |
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25,
|
| 78 |
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|
| 79 |
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|
| 80 |
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|
| 81 |
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|
| 82 |
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|
| 83 |
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|
| 84 |
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|
| 85 |
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|
| 86 |
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|
| 87 |
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|
| 88 |
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|
| 95 |
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|
| 96 |
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|
| 97 |
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|
| 98 |
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|
| 99 |
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|
| 100 |
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|
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|
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|
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| 113 |
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|
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|
| 115 |
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|
| 116 |
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|
| 117 |
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|
| 118 |
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|
| 119 |
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|
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|
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|
| 122 |
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|
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|
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|
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|
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|
| 150 |
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|
| 151 |
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|
| 152 |
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|
| 153 |
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|
| 154 |
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|
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|
| 165 |
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|
| 166 |
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|
| 167 |
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|
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|
| 169 |
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|
| 170 |
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|
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|
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|
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|
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|
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|
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|
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|
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|
| 179 |
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
| 189 |
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|
| 190 |
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|
| 191 |
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}
|
| 192 |
+
}
|
| 193 |
+
}
|
cdr_info/8tvd_H_L_E_cdr_info.json
ADDED
|
@@ -0,0 +1,177 @@
|
|
|
|
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|
|
|
|
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|
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|
|
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|
|
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|
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|
|
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|
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|
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|
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|
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|
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|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
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|
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|
|
|
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|
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|
|
|
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|
|
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|
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|
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|
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|
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|
|
|
|
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|
|
|
|
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|
|
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|
|
|
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|
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|
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|
|
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|
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|
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|
|
|
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|
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|
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|
|
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|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
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|
|
|
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|
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|
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|
|
|
|
|
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|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
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|
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|
|
|
|
|
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|
|
|
|
|
|
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|
|
|
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|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"entry_name": "8tvd_H_L_E",
|
| 3 |
+
"heavy_chain_id": "H",
|
| 4 |
+
"light_chain_id": "L",
|
| 5 |
+
"chain_mapping": {
|
| 6 |
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"protenix_to_original": {
|
| 7 |
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"A": "L",
|
| 8 |
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"B": "H",
|
| 9 |
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"C": "E"
|
| 10 |
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},
|
| 11 |
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"original_to_protenix": {
|
| 12 |
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"L": "A",
|
| 13 |
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"H": "B",
|
| 14 |
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"E": "C"
|
| 15 |
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},
|
| 16 |
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"sequence_order": [
|
| 17 |
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{
|
| 18 |
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"protenix_chain": "A",
|
| 19 |
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"original_chain": "L",
|
| 20 |
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"seq_len": 212,
|
| 21 |
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"entity_type": "proteinChain"
|
| 22 |
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},
|
| 23 |
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{
|
| 24 |
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"protenix_chain": "B",
|
| 25 |
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"original_chain": "H",
|
| 26 |
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"seq_len": 220,
|
| 27 |
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"entity_type": "proteinChain"
|
| 28 |
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},
|
| 29 |
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{
|
| 30 |
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"protenix_chain": "C",
|
| 31 |
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"original_chain": "E",
|
| 32 |
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"seq_len": 249,
|
| 33 |
+
"entity_type": "proteinChain"
|
| 34 |
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}
|
| 35 |
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]
|
| 36 |
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},
|
| 37 |
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"cdr_info": {
|
| 38 |
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"H_chain": {
|
| 39 |
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"cdr_indices": [
|
| 40 |
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|
| 41 |
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|
| 42 |
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|
| 43 |
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|
| 44 |
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|
| 45 |
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|
| 46 |
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|
| 47 |
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|
| 48 |
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|
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|
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|
| 51 |
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|
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|
| 53 |
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|
| 54 |
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|
| 55 |
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|
| 56 |
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|
| 57 |
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|
| 58 |
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|
| 59 |
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|
| 60 |
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|
| 61 |
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|
| 62 |
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107,
|
| 63 |
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108,
|
| 64 |
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|
| 65 |
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],
|
| 66 |
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"variable_domain_start_res_id": 1,
|
| 67 |
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|
| 68 |
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|
| 69 |
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|
| 70 |
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|
| 71 |
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|
| 72 |
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|
| 73 |
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|
| 74 |
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|
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|
| 76 |
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|
| 77 |
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|
| 78 |
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|
| 79 |
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|
| 80 |
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|
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|
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|
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|
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|
| 86 |
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|
| 87 |
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|
| 88 |
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|
| 89 |
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
| 103 |
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|
| 104 |
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
| 135 |
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|
| 136 |
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|
| 137 |
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|
| 138 |
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
| 148 |
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|
| 149 |
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|
| 150 |
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|
| 151 |
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|
| 152 |
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|
| 153 |
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|
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|
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|
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|
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|
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|
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|
| 160 |
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|
| 161 |
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|
| 162 |
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|
| 163 |
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|
| 164 |
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|
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|
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|
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|
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|
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|
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|
| 171 |
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|
| 172 |
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|
| 173 |
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|
| 174 |
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|
| 175 |
+
}
|
| 176 |
+
}
|
| 177 |
+
}
|
cdr_info/8tvj_H_L_E_cdr_info.json
ADDED
|
@@ -0,0 +1,187 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
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|
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|
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|
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|
|
|
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|
|
|
|
|
|
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|
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|
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|
|
|
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|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
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|
|
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|
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|
|
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|
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|
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|
|
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|
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|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"entry_name": "8tvj_H_L_E",
|
| 3 |
+
"heavy_chain_id": "H",
|
| 4 |
+
"light_chain_id": "L",
|
| 5 |
+
"chain_mapping": {
|
| 6 |
+
"protenix_to_original": {
|
| 7 |
+
"A": "H",
|
| 8 |
+
"B": "L",
|
| 9 |
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"C": "E"
|
| 10 |
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},
|
| 11 |
+
"original_to_protenix": {
|
| 12 |
+
"H": "A",
|
| 13 |
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"L": "B",
|
| 14 |
+
"E": "C"
|
| 15 |
+
},
|
| 16 |
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"sequence_order": [
|
| 17 |
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{
|
| 18 |
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|
| 19 |
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|
| 20 |
+
"seq_len": 227,
|
| 21 |
+
"entity_type": "proteinChain"
|
| 22 |
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},
|
| 23 |
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{
|
| 24 |
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"protenix_chain": "B",
|
| 25 |
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|
| 26 |
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"seq_len": 213,
|
| 27 |
+
"entity_type": "proteinChain"
|
| 28 |
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},
|
| 29 |
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{
|
| 30 |
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"protenix_chain": "C",
|
| 31 |
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"original_chain": "E",
|
| 32 |
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"seq_len": 248,
|
| 33 |
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"entity_type": "proteinChain"
|
| 34 |
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}
|
| 35 |
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]
|
| 36 |
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},
|
| 37 |
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"cdr_info": {
|
| 38 |
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|
| 39 |
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|
| 40 |
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|
| 41 |
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|
| 42 |
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|
| 43 |
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|
| 58 |
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|
| 59 |
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|
| 60 |
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|
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|
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|
| 63 |
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|
| 64 |
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|
| 65 |
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|
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|
| 67 |
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|
| 68 |
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|
| 69 |
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|
| 70 |
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|
| 71 |
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|
| 72 |
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|
| 73 |
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|
| 74 |
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|
| 75 |
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|
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|
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|
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|
| 81 |
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|
| 82 |
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|
| 83 |
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|
| 84 |
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|
| 85 |
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|
| 91 |
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|
| 92 |
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|
| 93 |
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|
| 94 |
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|
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|
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|
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|
| 113 |
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|
| 114 |
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|
| 115 |
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|
| 116 |
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|
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|
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|
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|
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|
| 144 |
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|
| 145 |
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|
| 146 |
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|
| 147 |
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|
| 148 |
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|
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|
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|
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|
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|
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|
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|
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|
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|
| 158 |
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|
| 159 |
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|
| 160 |
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|
| 161 |
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|
| 162 |
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|
| 163 |
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|
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|
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|
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|
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|
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|
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|
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|
| 171 |
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|
| 172 |
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|
| 173 |
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|
| 174 |
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|
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|
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|
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|
| 183 |
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|
| 184 |
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|
| 185 |
+
}
|
| 186 |
+
}
|
| 187 |
+
}
|
cdr_info/8txm_H_L_AB_cdr_info.json
ADDED
|
@@ -0,0 +1,189 @@
|
|
|
|
|
|
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|
|
|
|
|
|
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|
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|
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|
|
|
|
|
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|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
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|
|
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|
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|
|
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|
|
|
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|
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|
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|
|
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|
|
|
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|
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|
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|
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|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
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|
|
|
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|
|
|
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|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"entry_name": "8txm_H_L_AB",
|
| 3 |
+
"heavy_chain_id": "H",
|
| 4 |
+
"light_chain_id": "L",
|
| 5 |
+
"chain_mapping": {
|
| 6 |
+
"protenix_to_original": {
|
| 7 |
+
"A": "A",
|
| 8 |
+
"B": "B",
|
| 9 |
+
"C": "H",
|
| 10 |
+
"D": "L"
|
| 11 |
+
},
|
| 12 |
+
"original_to_protenix": {
|
| 13 |
+
"A": "A",
|
| 14 |
+
"B": "B",
|
| 15 |
+
"H": "C",
|
| 16 |
+
"L": "D"
|
| 17 |
+
},
|
| 18 |
+
"sequence_order": [
|
| 19 |
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{
|
| 20 |
+
"protenix_chain": "A",
|
| 21 |
+
"original_chain": "A",
|
| 22 |
+
"seq_len": 328,
|
| 23 |
+
"entity_type": "proteinChain"
|
| 24 |
+
},
|
| 25 |
+
{
|
| 26 |
+
"protenix_chain": "B",
|
| 27 |
+
"original_chain": "B",
|
| 28 |
+
"seq_len": 173,
|
| 29 |
+
"entity_type": "proteinChain"
|
| 30 |
+
},
|
| 31 |
+
{
|
| 32 |
+
"protenix_chain": "C",
|
| 33 |
+
"original_chain": "H",
|
| 34 |
+
"seq_len": 226,
|
| 35 |
+
"entity_type": "proteinChain"
|
| 36 |
+
},
|
| 37 |
+
{
|
| 38 |
+
"protenix_chain": "D",
|
| 39 |
+
"original_chain": "L",
|
| 40 |
+
"seq_len": 214,
|
| 41 |
+
"entity_type": "proteinChain"
|
| 42 |
+
}
|
| 43 |
+
]
|
| 44 |
+
},
|
| 45 |
+
"cdr_info": {
|
| 46 |
+
"H_chain": {
|
| 47 |
+
"cdr_indices": [
|
| 48 |
+
25,
|
| 49 |
+
26,
|
| 50 |
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|
| 51 |
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|
| 52 |
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|
| 53 |
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|
| 54 |
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|
| 55 |
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|
| 56 |
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|
| 57 |
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|
| 58 |
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|
| 59 |
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|
| 60 |
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|
| 61 |
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98,
|
| 62 |
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|
| 63 |
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|
| 64 |
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|
| 65 |
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102,
|
| 66 |
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|
| 67 |
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|
| 68 |
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|
| 69 |
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|
| 70 |
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|
| 71 |
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108,
|
| 72 |
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109,
|
| 73 |
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110,
|
| 74 |
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111
|
| 75 |
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],
|
| 76 |
+
"variable_domain_start_res_id": 2,
|
| 77 |
+
"cdr1": {
|
| 78 |
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|
| 79 |
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|
| 80 |
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|
| 81 |
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|
| 82 |
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|
| 83 |
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|
| 84 |
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|
| 85 |
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|
| 86 |
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|
| 87 |
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|
| 88 |
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|
| 89 |
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|
| 90 |
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|
| 91 |
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|
| 92 |
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|
| 93 |
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|
| 94 |
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|
| 95 |
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56
|
| 96 |
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|
| 97 |
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|
| 98 |
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|
| 99 |
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|
| 100 |
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|
| 101 |
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|
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|
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|
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|
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|
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|
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|
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|
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|
| 110 |
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|
| 111 |
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|
| 112 |
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|
| 113 |
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111
|
| 114 |
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|
| 115 |
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|
| 116 |
+
},
|
| 117 |
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"L_chain": {
|
| 118 |
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|
| 119 |
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|
| 120 |
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|
| 121 |
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|
| 122 |
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|
| 123 |
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|
| 124 |
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|
| 125 |
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|
| 126 |
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|
| 127 |
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|
| 128 |
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|
| 129 |
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|
| 130 |
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|
| 131 |
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|
| 132 |
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|
| 133 |
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|
| 134 |
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|
| 135 |
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|
| 136 |
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|
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|
| 138 |
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|
| 139 |
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|
| 140 |
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|
| 141 |
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|
| 142 |
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|
| 143 |
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|
| 144 |
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95,
|
| 145 |
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96
|
| 146 |
+
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|
| 147 |
+
"variable_domain_start_res_id": 2,
|
| 148 |
+
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|
| 149 |
+
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|
| 150 |
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|
| 151 |
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|
| 152 |
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|
| 153 |
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|
| 154 |
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|
| 155 |
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|
| 156 |
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|
| 157 |
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|
| 158 |
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|
| 159 |
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|
| 160 |
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|
| 161 |
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|
| 162 |
+
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|
| 163 |
+
"cdr2": {
|
| 164 |
+
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|
| 165 |
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|
| 166 |
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|
| 167 |
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51,
|
| 168 |
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52,
|
| 169 |
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53,
|
| 170 |
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54,
|
| 171 |
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55
|
| 172 |
+
]
|
| 173 |
+
},
|
| 174 |
+
"cdr3": {
|
| 175 |
+
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|
| 176 |
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|
| 177 |
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|
| 178 |
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|
| 179 |
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|
| 180 |
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|
| 181 |
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|
| 182 |
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|
| 183 |
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95,
|
| 184 |
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96
|
| 185 |
+
]
|
| 186 |
+
}
|
| 187 |
+
}
|
| 188 |
+
}
|
| 189 |
+
}
|
cdr_info/8txp_H_L_AB_cdr_info.json
ADDED
|
@@ -0,0 +1,189 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
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|
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|
|
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|
|
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|
|
|
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|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"entry_name": "8txp_H_L_AB",
|
| 3 |
+
"heavy_chain_id": "H",
|
| 4 |
+
"light_chain_id": "L",
|
| 5 |
+
"chain_mapping": {
|
| 6 |
+
"protenix_to_original": {
|
| 7 |
+
"A": "A",
|
| 8 |
+
"B": "B",
|
| 9 |
+
"C": "H",
|
| 10 |
+
"D": "L"
|
| 11 |
+
},
|
| 12 |
+
"original_to_protenix": {
|
| 13 |
+
"A": "A",
|
| 14 |
+
"B": "B",
|
| 15 |
+
"H": "C",
|
| 16 |
+
"L": "D"
|
| 17 |
+
},
|
| 18 |
+
"sequence_order": [
|
| 19 |
+
{
|
| 20 |
+
"protenix_chain": "A",
|
| 21 |
+
"original_chain": "A",
|
| 22 |
+
"seq_len": 331,
|
| 23 |
+
"entity_type": "proteinChain"
|
| 24 |
+
},
|
| 25 |
+
{
|
| 26 |
+
"protenix_chain": "B",
|
| 27 |
+
"original_chain": "B",
|
| 28 |
+
"seq_len": 177,
|
| 29 |
+
"entity_type": "proteinChain"
|
| 30 |
+
},
|
| 31 |
+
{
|
| 32 |
+
"protenix_chain": "C",
|
| 33 |
+
"original_chain": "H",
|
| 34 |
+
"seq_len": 225,
|
| 35 |
+
"entity_type": "proteinChain"
|
| 36 |
+
},
|
| 37 |
+
{
|
| 38 |
+
"protenix_chain": "D",
|
| 39 |
+
"original_chain": "L",
|
| 40 |
+
"seq_len": 214,
|
| 41 |
+
"entity_type": "proteinChain"
|
| 42 |
+
}
|
| 43 |
+
]
|
| 44 |
+
},
|
| 45 |
+
"cdr_info": {
|
| 46 |
+
"H_chain": {
|
| 47 |
+
"cdr_indices": [
|
| 48 |
+
25,
|
| 49 |
+
26,
|
| 50 |
+
27,
|
| 51 |
+
28,
|
| 52 |
+
29,
|
| 53 |
+
30,
|
| 54 |
+
31,
|
| 55 |
+
51,
|
| 56 |
+
52,
|
| 57 |
+
53,
|
| 58 |
+
54,
|
| 59 |
+
55,
|
| 60 |
+
56,
|
| 61 |
+
98,
|
| 62 |
+
99,
|
| 63 |
+
100,
|
| 64 |
+
101,
|
| 65 |
+
102,
|
| 66 |
+
103,
|
| 67 |
+
104,
|
| 68 |
+
105,
|
| 69 |
+
106,
|
| 70 |
+
107,
|
| 71 |
+
108,
|
| 72 |
+
109,
|
| 73 |
+
110,
|
| 74 |
+
111
|
| 75 |
+
],
|
| 76 |
+
"variable_domain_start_res_id": 1,
|
| 77 |
+
"cdr1": {
|
| 78 |
+
"indices": [
|
| 79 |
+
25,
|
| 80 |
+
26,
|
| 81 |
+
27,
|
| 82 |
+
28,
|
| 83 |
+
29,
|
| 84 |
+
30,
|
| 85 |
+
31
|
| 86 |
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]
|
| 87 |
+
},
|
| 88 |
+
"cdr2": {
|
| 89 |
+
"indices": [
|
| 90 |
+
51,
|
| 91 |
+
52,
|
| 92 |
+
53,
|
| 93 |
+
54,
|
| 94 |
+
55,
|
| 95 |
+
56
|
| 96 |
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]
|
| 97 |
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},
|
| 98 |
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"cdr3": {
|
| 99 |
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"indices": [
|
| 100 |
+
98,
|
| 101 |
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|
| 102 |
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100,
|
| 103 |
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101,
|
| 104 |
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102,
|
| 105 |
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103,
|
| 106 |
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104,
|
| 107 |
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105,
|
| 108 |
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106,
|
| 109 |
+
107,
|
| 110 |
+
108,
|
| 111 |
+
109,
|
| 112 |
+
110,
|
| 113 |
+
111
|
| 114 |
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]
|
| 115 |
+
}
|
| 116 |
+
},
|
| 117 |
+
"L_chain": {
|
| 118 |
+
"cdr_indices": [
|
| 119 |
+
23,
|
| 120 |
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24,
|
| 121 |
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|
| 122 |
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26,
|
| 123 |
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27,
|
| 124 |
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|
| 125 |
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29,
|
| 126 |
+
30,
|
| 127 |
+
31,
|
| 128 |
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32,
|
| 129 |
+
33,
|
| 130 |
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|
| 131 |
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|
| 132 |
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|
| 133 |
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|
| 134 |
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|
| 135 |
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|
| 136 |
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|
| 137 |
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|
| 138 |
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|
| 139 |
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|
| 140 |
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|
| 141 |
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92,
|
| 142 |
+
93,
|
| 143 |
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94,
|
| 144 |
+
95,
|
| 145 |
+
96
|
| 146 |
+
],
|
| 147 |
+
"variable_domain_start_res_id": 1,
|
| 148 |
+
"cdr1": {
|
| 149 |
+
"indices": [
|
| 150 |
+
23,
|
| 151 |
+
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|
| 152 |
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25,
|
| 153 |
+
26,
|
| 154 |
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27,
|
| 155 |
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28,
|
| 156 |
+
29,
|
| 157 |
+
30,
|
| 158 |
+
31,
|
| 159 |
+
32,
|
| 160 |
+
33
|
| 161 |
+
]
|
| 162 |
+
},
|
| 163 |
+
"cdr2": {
|
| 164 |
+
"indices": [
|
| 165 |
+
49,
|
| 166 |
+
50,
|
| 167 |
+
51,
|
| 168 |
+
52,
|
| 169 |
+
53,
|
| 170 |
+
54,
|
| 171 |
+
55
|
| 172 |
+
]
|
| 173 |
+
},
|
| 174 |
+
"cdr3": {
|
| 175 |
+
"indices": [
|
| 176 |
+
88,
|
| 177 |
+
89,
|
| 178 |
+
90,
|
| 179 |
+
91,
|
| 180 |
+
92,
|
| 181 |
+
93,
|
| 182 |
+
94,
|
| 183 |
+
95,
|
| 184 |
+
96
|
| 185 |
+
]
|
| 186 |
+
}
|
| 187 |
+
}
|
| 188 |
+
}
|
| 189 |
+
}
|
cdr_info/8ty1_C_B_A_cdr_info.json
ADDED
|
@@ -0,0 +1,213 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"entry_name": "8ty1_C_B_A",
|
| 3 |
+
"heavy_chain_id": "C",
|
| 4 |
+
"light_chain_id": "B",
|
| 5 |
+
"chain_mapping": {
|
| 6 |
+
"protenix_to_original": {
|
| 7 |
+
"A": "A",
|
| 8 |
+
"B": "B",
|
| 9 |
+
"C": "C"
|
| 10 |
+
},
|
| 11 |
+
"original_to_protenix": {
|
| 12 |
+
"A": "A",
|
| 13 |
+
"B": "B",
|
| 14 |
+
"C": "C"
|
| 15 |
+
},
|
| 16 |
+
"sequence_order": [
|
| 17 |
+
{
|
| 18 |
+
"protenix_chain": "A",
|
| 19 |
+
"original_chain": "A",
|
| 20 |
+
"seq_len": 1467,
|
| 21 |
+
"entity_type": "proteinChain"
|
| 22 |
+
},
|
| 23 |
+
{
|
| 24 |
+
"protenix_chain": "B",
|
| 25 |
+
"original_chain": "B",
|
| 26 |
+
"seq_len": 216,
|
| 27 |
+
"entity_type": "proteinChain"
|
| 28 |
+
},
|
| 29 |
+
{
|
| 30 |
+
"protenix_chain": "C",
|
| 31 |
+
"original_chain": "C",
|
| 32 |
+
"seq_len": 235,
|
| 33 |
+
"entity_type": "proteinChain"
|
| 34 |
+
}
|
| 35 |
+
]
|
| 36 |
+
},
|
| 37 |
+
"cdr_info": {
|
| 38 |
+
"H_chain": {
|
| 39 |
+
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|
| 40 |
+
25,
|
| 41 |
+
26,
|
| 42 |
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|
| 43 |
+
28,
|
| 44 |
+
29,
|
| 45 |
+
30,
|
| 46 |
+
31,
|
| 47 |
+
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|
| 48 |
+
33,
|
| 49 |
+
34,
|
| 50 |
+
35,
|
| 51 |
+
36,
|
| 52 |
+
37,
|
| 53 |
+
38,
|
| 54 |
+
39,
|
| 55 |
+
40,
|
| 56 |
+
41,
|
| 57 |
+
61,
|
| 58 |
+
62,
|
| 59 |
+
63,
|
| 60 |
+
64,
|
| 61 |
+
65,
|
| 62 |
+
66,
|
| 63 |
+
108,
|
| 64 |
+
109,
|
| 65 |
+
110,
|
| 66 |
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111,
|
| 67 |
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112,
|
| 68 |
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113,
|
| 69 |
+
114,
|
| 70 |
+
115,
|
| 71 |
+
116,
|
| 72 |
+
117,
|
| 73 |
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118,
|
| 74 |
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119,
|
| 75 |
+
120,
|
| 76 |
+
121,
|
| 77 |
+
122,
|
| 78 |
+
123,
|
| 79 |
+
124,
|
| 80 |
+
125
|
| 81 |
+
],
|
| 82 |
+
"variable_domain_start_res_id": 1,
|
| 83 |
+
"cdr1": {
|
| 84 |
+
"indices": [
|
| 85 |
+
25,
|
| 86 |
+
26,
|
| 87 |
+
27,
|
| 88 |
+
28,
|
| 89 |
+
29,
|
| 90 |
+
30,
|
| 91 |
+
31,
|
| 92 |
+
32,
|
| 93 |
+
33,
|
| 94 |
+
34,
|
| 95 |
+
35,
|
| 96 |
+
36,
|
| 97 |
+
37,
|
| 98 |
+
38,
|
| 99 |
+
39,
|
| 100 |
+
40,
|
| 101 |
+
41
|
| 102 |
+
]
|
| 103 |
+
},
|
| 104 |
+
"cdr2": {
|
| 105 |
+
"indices": [
|
| 106 |
+
61,
|
| 107 |
+
62,
|
| 108 |
+
63,
|
| 109 |
+
64,
|
| 110 |
+
65,
|
| 111 |
+
66
|
| 112 |
+
]
|
| 113 |
+
},
|
| 114 |
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"cdr3": {
|
| 115 |
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"indices": [
|
| 116 |
+
108,
|
| 117 |
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|
| 118 |
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|
| 119 |
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|
| 120 |
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|
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|
| 122 |
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|
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|
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|
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|
| 126 |
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|
| 127 |
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|
| 128 |
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|
| 129 |
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|
| 130 |
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|
| 131 |
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123,
|
| 132 |
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|
| 133 |
+
125
|
| 134 |
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|
| 135 |
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}
|
| 136 |
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},
|
| 137 |
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"L_chain": {
|
| 138 |
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|
| 139 |
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|
| 140 |
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|
| 141 |
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|
| 142 |
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|
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|
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|
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|
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|
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|
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|
| 150 |
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|
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|
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|
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|
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|
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|
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|
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| 163 |
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|
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|
| 165 |
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|
| 166 |
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|
| 167 |
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|
| 168 |
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|
| 169 |
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"variable_domain_start_res_id": 1,
|
| 170 |
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|
| 171 |
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|
| 172 |
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|
| 173 |
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|
| 174 |
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|
| 175 |
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|
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|
| 177 |
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|
| 178 |
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|
| 179 |
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|
| 180 |
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|
| 181 |
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|
| 182 |
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|
| 183 |
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|
| 184 |
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|
| 185 |
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|
| 186 |
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"cdr2": {
|
| 187 |
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|
| 188 |
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|
| 189 |
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|
| 190 |
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|
| 191 |
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|
| 192 |
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|
| 193 |
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|
| 194 |
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|
| 195 |
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|
| 196 |
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|
| 197 |
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|
| 198 |
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|
| 199 |
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|
| 200 |
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|
| 201 |
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|
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|
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|
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|
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|
| 208 |
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|
| 209 |
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|
| 210 |
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|
| 211 |
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}
|
| 212 |
+
}
|
| 213 |
+
}
|
cdr_info/8u1c_H_L_A_cdr_info.json
ADDED
|
@@ -0,0 +1,193 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
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|
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|
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|
|
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|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
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|
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|
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|
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|
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|
|
|
|
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|
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|
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|
|
|
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|
|
|
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|
|
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|
|
|
|
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|
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|
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|
|
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|
|
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|
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|
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|
|
|
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|
|
|
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|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
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|
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|
|
|
|
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|
|
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|
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|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
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|
|
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|
|
|
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|
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|
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|
|
|
|
|
|
|
|
|
|
|
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|
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|
|
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|
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|
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|
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|
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|
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|
|
|
| 1 |
+
{
|
| 2 |
+
"entry_name": "8u1c_H_L_A",
|
| 3 |
+
"heavy_chain_id": "H",
|
| 4 |
+
"light_chain_id": "L",
|
| 5 |
+
"chain_mapping": {
|
| 6 |
+
"protenix_to_original": {
|
| 7 |
+
"A": "H",
|
| 8 |
+
"B": "L",
|
| 9 |
+
"C": "A"
|
| 10 |
+
},
|
| 11 |
+
"original_to_protenix": {
|
| 12 |
+
"H": "A",
|
| 13 |
+
"L": "B",
|
| 14 |
+
"A": "C"
|
| 15 |
+
},
|
| 16 |
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"sequence_order": [
|
| 17 |
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{
|
| 18 |
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"protenix_chain": "A",
|
| 19 |
+
"original_chain": "H",
|
| 20 |
+
"seq_len": 128,
|
| 21 |
+
"entity_type": "proteinChain"
|
| 22 |
+
},
|
| 23 |
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{
|
| 24 |
+
"protenix_chain": "B",
|
| 25 |
+
"original_chain": "L",
|
| 26 |
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"seq_len": 108,
|
| 27 |
+
"entity_type": "proteinChain"
|
| 28 |
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},
|
| 29 |
+
{
|
| 30 |
+
"protenix_chain": "C",
|
| 31 |
+
"original_chain": "A",
|
| 32 |
+
"seq_len": 466,
|
| 33 |
+
"entity_type": "proteinChain"
|
| 34 |
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}
|
| 35 |
+
]
|
| 36 |
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},
|
| 37 |
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"cdr_info": {
|
| 38 |
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"H_chain": {
|
| 39 |
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"cdr_indices": [
|
| 40 |
+
25,
|
| 41 |
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|
| 42 |
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|
| 43 |
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|
| 44 |
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|
| 45 |
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|
| 46 |
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|
| 47 |
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|
| 48 |
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|
| 49 |
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|
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|
| 51 |
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|
| 52 |
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|
| 53 |
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|
| 54 |
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|
| 55 |
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|
| 56 |
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|
| 57 |
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|
| 58 |
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|
| 59 |
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|
| 60 |
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|
| 61 |
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|
| 62 |
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|
| 63 |
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|
| 64 |
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|
| 65 |
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|
| 66 |
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111,
|
| 67 |
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|
| 68 |
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113,
|
| 69 |
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114,
|
| 70 |
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115,
|
| 71 |
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116
|
| 72 |
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],
|
| 73 |
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"variable_domain_start_res_id": 1,
|
| 74 |
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"cdr1": {
|
| 75 |
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|
| 76 |
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|
| 77 |
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|
| 78 |
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|
| 79 |
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|
| 80 |
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|
| 81 |
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|
| 82 |
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|
| 83 |
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|
| 84 |
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|
| 85 |
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|
| 86 |
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|
| 87 |
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|
| 88 |
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|
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|
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|
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|
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|
| 93 |
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|
| 94 |
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|
| 95 |
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|
| 96 |
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|
| 97 |
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
| 114 |
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|
| 115 |
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|
| 116 |
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|
| 117 |
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|
| 118 |
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|
| 119 |
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|
| 120 |
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|
| 121 |
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|
| 122 |
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
| 148 |
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|
| 149 |
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|
| 150 |
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|
| 151 |
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|
| 152 |
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|
| 153 |
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|
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|
| 155 |
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|
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|
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|
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|
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|
| 160 |
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|
| 161 |
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|
| 162 |
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|
| 163 |
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|
| 164 |
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|
| 165 |
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|
| 166 |
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|
| 167 |
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|
| 168 |
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|
| 169 |
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|
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|
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|
| 172 |
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|
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|
| 174 |
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|
| 175 |
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|
| 176 |
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|
| 177 |
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|
| 178 |
+
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|
| 179 |
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|
| 180 |
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|
| 181 |
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|
| 182 |
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|
| 183 |
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|
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|
| 185 |
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|
| 186 |
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|
| 187 |
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|
| 188 |
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|
| 189 |
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|
| 190 |
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|
| 191 |
+
}
|
| 192 |
+
}
|
| 193 |
+
}
|
cdr_info/8u1q_H_L_A_cdr_info.json
ADDED
|
@@ -0,0 +1,175 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
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|
|
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|
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|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
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|
|
|
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|
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|
|
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|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
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|
|
|
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|
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|
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|
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|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"entry_name": "8u1q_H_L_A",
|
| 3 |
+
"heavy_chain_id": "H",
|
| 4 |
+
"light_chain_id": "L",
|
| 5 |
+
"chain_mapping": {
|
| 6 |
+
"protenix_to_original": {
|
| 7 |
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"A": "A",
|
| 8 |
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"B": "H",
|
| 9 |
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|
| 10 |
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},
|
| 11 |
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|
| 12 |
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"A": "A",
|
| 13 |
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"H": "B",
|
| 14 |
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"L": "C"
|
| 15 |
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},
|
| 16 |
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"sequence_order": [
|
| 17 |
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{
|
| 18 |
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"protenix_chain": "A",
|
| 19 |
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|
| 20 |
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|
| 21 |
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|
| 22 |
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},
|
| 23 |
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{
|
| 24 |
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|
| 25 |
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|
| 26 |
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|
| 27 |
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|
| 28 |
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|
| 29 |
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{
|
| 30 |
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|
| 31 |
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|
| 32 |
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"seq_len": 107,
|
| 33 |
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"entity_type": "proteinChain"
|
| 34 |
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}
|
| 35 |
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]
|
| 36 |
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},
|
| 37 |
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"cdr_info": {
|
| 38 |
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|
| 39 |
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|
| 40 |
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|
| 41 |
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|
| 42 |
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|
| 43 |
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|
| 44 |
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| 45 |
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| 61 |
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| 63 |
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|
| 64 |
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|
| 65 |
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|
| 66 |
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|
| 67 |
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|
| 68 |
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| 78 |
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| 79 |
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| 80 |
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|
| 81 |
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| 84 |
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|
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|
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| 88 |
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|
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|
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|
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|
| 101 |
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|
| 102 |
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|
| 103 |
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|
| 104 |
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|
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|
| 132 |
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|
| 133 |
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|
| 134 |
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|
| 135 |
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|
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| 147 |
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|
| 148 |
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|
| 149 |
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|
| 150 |
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|
| 151 |
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| 160 |
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|
| 172 |
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|
| 173 |
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}
|
| 174 |
+
}
|
| 175 |
+
}
|
cdr_info/8u44_V_X_AB_cdr_info.json
ADDED
|
@@ -0,0 +1,187 @@
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|
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|
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|
|
|
|
|
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|
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|
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|
|
|
|
|
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|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
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|
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|
|
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|
|
|
|
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|
|
|
|
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|
|
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|
|
|
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|
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|
|
|
|
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|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
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|
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|
|
|
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|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
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|
|
|
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|
|
|
|
|
|
|
|
|
|
|
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|
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|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"entry_name": "8u44_V_X_AB",
|
| 3 |
+
"heavy_chain_id": "V",
|
| 4 |
+
"light_chain_id": "X",
|
| 5 |
+
"chain_mapping": {
|
| 6 |
+
"protenix_to_original": {
|
| 7 |
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"A": "V",
|
| 8 |
+
"B": "X",
|
| 9 |
+
"C": "A",
|
| 10 |
+
"D": "B"
|
| 11 |
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},
|
| 12 |
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"original_to_protenix": {
|
| 13 |
+
"V": "A",
|
| 14 |
+
"X": "B",
|
| 15 |
+
"A": "C",
|
| 16 |
+
"B": "D"
|
| 17 |
+
},
|
| 18 |
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"sequence_order": [
|
| 19 |
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{
|
| 20 |
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"protenix_chain": "A",
|
| 21 |
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"original_chain": "V",
|
| 22 |
+
"seq_len": 245,
|
| 23 |
+
"entity_type": "proteinChain"
|
| 24 |
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},
|
| 25 |
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{
|
| 26 |
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"protenix_chain": "B",
|
| 27 |
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"original_chain": "X",
|
| 28 |
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"seq_len": 235,
|
| 29 |
+
"entity_type": "proteinChain"
|
| 30 |
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},
|
| 31 |
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{
|
| 32 |
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"protenix_chain": "C",
|
| 33 |
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"original_chain": "A",
|
| 34 |
+
"seq_len": 368,
|
| 35 |
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"entity_type": "proteinChain"
|
| 36 |
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},
|
| 37 |
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{
|
| 38 |
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"protenix_chain": "D",
|
| 39 |
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"original_chain": "B",
|
| 40 |
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"seq_len": 237,
|
| 41 |
+
"entity_type": "proteinChain"
|
| 42 |
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}
|
| 43 |
+
]
|
| 44 |
+
},
|
| 45 |
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"cdr_info": {
|
| 46 |
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"H_chain": {
|
| 47 |
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"cdr_indices": [
|
| 48 |
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|
| 49 |
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|
| 50 |
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|
| 51 |
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|
| 52 |
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|
| 53 |
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|
| 54 |
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|
| 55 |
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|
| 56 |
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|
| 57 |
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|
| 58 |
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|
| 59 |
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|
| 60 |
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|
| 61 |
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|
| 62 |
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|
| 63 |
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|
| 64 |
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|
| 65 |
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|
| 66 |
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|
| 67 |
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|
| 68 |
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|
| 69 |
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|
| 70 |
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|
| 71 |
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108,
|
| 72 |
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|
| 73 |
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|
| 74 |
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"variable_domain_start_res_id": 22,
|
| 75 |
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|
| 76 |
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|
| 77 |
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|
| 78 |
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|
| 79 |
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|
| 80 |
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|
| 81 |
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|
| 82 |
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|
| 83 |
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|
| 84 |
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|
| 85 |
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|
| 86 |
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|
| 87 |
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|
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|
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|
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|
| 91 |
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|
| 92 |
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|
| 93 |
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|
| 94 |
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|
| 95 |
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|
| 96 |
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
| 107 |
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|
| 108 |
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|
| 109 |
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|
| 110 |
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|
| 111 |
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|
| 112 |
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|
| 113 |
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|
| 114 |
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|
| 115 |
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|
| 116 |
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|
| 117 |
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|
| 118 |
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|
| 119 |
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|
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|
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|
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|
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|
| 124 |
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|
| 125 |
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|
| 126 |
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|
| 127 |
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|
| 128 |
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|
| 129 |
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
| 140 |
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|
| 141 |
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|
| 142 |
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|
| 143 |
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|
| 144 |
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|
| 145 |
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|
| 146 |
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|
| 147 |
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|
| 148 |
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|
| 149 |
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|
| 150 |
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|
| 151 |
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|
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|
| 153 |
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|
| 154 |
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|
| 155 |
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|
| 156 |
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|
| 157 |
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|
| 158 |
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|
| 159 |
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|
| 160 |
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|
| 161 |
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|
| 162 |
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|
| 163 |
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|
| 164 |
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|
| 165 |
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|
| 166 |
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|
| 167 |
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|
| 168 |
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|
| 169 |
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|
| 170 |
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|
| 171 |
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"cdr3": {
|
| 172 |
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|
| 173 |
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|
| 174 |
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|
| 175 |
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|
| 176 |
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|
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|
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|
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|
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|
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|
| 182 |
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|
| 183 |
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|
| 184 |
+
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|
| 185 |
+
}
|
| 186 |
+
}
|
| 187 |
+
}
|
cdr_info/8ukh_H_L_A_cdr_info.json
ADDED
|
@@ -0,0 +1,167 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
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|
|
|
|
|
|
|
|
|
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|
|
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|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
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|
|
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|
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|
|
|
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|
|
|
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|
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|
|
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|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
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|
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|
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|
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|
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|
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|
|
|
|
|
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|
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|
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|
|
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|
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|
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|
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|
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|
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|
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|
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|
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|
|
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|
|
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|
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|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"entry_name": "8ukh_H_L_A",
|
| 3 |
+
"heavy_chain_id": "H",
|
| 4 |
+
"light_chain_id": "L",
|
| 5 |
+
"chain_mapping": {
|
| 6 |
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"protenix_to_original": {
|
| 7 |
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"A": "A",
|
| 8 |
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"B": "H",
|
| 9 |
+
"C": "L"
|
| 10 |
+
},
|
| 11 |
+
"original_to_protenix": {
|
| 12 |
+
"A": "A",
|
| 13 |
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"H": "B",
|
| 14 |
+
"L": "C"
|
| 15 |
+
},
|
| 16 |
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"sequence_order": [
|
| 17 |
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{
|
| 18 |
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"protenix_chain": "A",
|
| 19 |
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|
| 20 |
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|
| 21 |
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|
| 22 |
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},
|
| 23 |
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{
|
| 24 |
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"protenix_chain": "B",
|
| 25 |
+
"original_chain": "H",
|
| 26 |
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"seq_len": 218,
|
| 27 |
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"entity_type": "proteinChain"
|
| 28 |
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},
|
| 29 |
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{
|
| 30 |
+
"protenix_chain": "C",
|
| 31 |
+
"original_chain": "L",
|
| 32 |
+
"seq_len": 210,
|
| 33 |
+
"entity_type": "proteinChain"
|
| 34 |
+
}
|
| 35 |
+
]
|
| 36 |
+
},
|
| 37 |
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"cdr_info": {
|
| 38 |
+
"H_chain": {
|
| 39 |
+
"cdr_indices": [
|
| 40 |
+
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|
| 41 |
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|
| 42 |
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|
| 43 |
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|
| 44 |
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|
| 45 |
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|
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|
| 47 |
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|
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|
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|
| 55 |
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|
| 56 |
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|
| 57 |
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|
| 58 |
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|
| 59 |
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|
| 60 |
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|
| 61 |
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|
| 62 |
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"variable_domain_start_res_id": 1,
|
| 63 |
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|
| 64 |
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|
| 65 |
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|
| 66 |
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|
| 67 |
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|
| 68 |
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| 69 |
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|
| 70 |
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|
| 71 |
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|
| 72 |
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|
| 73 |
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|
| 74 |
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|
| 75 |
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|
| 76 |
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|
| 77 |
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|
| 78 |
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|
| 79 |
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|
| 80 |
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|
| 81 |
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|
| 82 |
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|
| 83 |
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|
| 84 |
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|
| 85 |
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|
| 86 |
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|
| 87 |
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|
| 88 |
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|
| 89 |
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|
| 90 |
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|
| 91 |
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|
| 92 |
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|
| 93 |
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|
| 94 |
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|
| 95 |
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}
|
| 96 |
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|
| 97 |
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"L_chain": {
|
| 98 |
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|
| 99 |
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|
| 100 |
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|
| 101 |
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|
| 102 |
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|
| 103 |
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|
| 104 |
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|
| 105 |
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|
| 106 |
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|
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|
| 108 |
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|
| 109 |
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|
| 110 |
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|
| 111 |
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|
| 112 |
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|
| 113 |
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|
| 114 |
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|
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|
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|
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|
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|
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|
| 123 |
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|
| 124 |
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|
| 125 |
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|
| 126 |
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|
| 127 |
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|
| 128 |
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|
| 129 |
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|
| 130 |
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|
| 131 |
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|
| 132 |
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|
| 133 |
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|
| 134 |
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|
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|
| 136 |
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|
| 137 |
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|
| 138 |
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|
| 139 |
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|
| 140 |
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|
| 141 |
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|
| 142 |
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|
| 143 |
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|
| 144 |
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|
| 145 |
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|
| 146 |
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|
| 147 |
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|
| 148 |
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|
| 149 |
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|
| 150 |
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|
| 151 |
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|
| 152 |
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|
| 153 |
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|
| 154 |
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|
| 155 |
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|
| 156 |
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|
| 157 |
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|
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|
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|
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|
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|
| 162 |
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|
| 163 |
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|
| 164 |
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|
| 165 |
+
}
|
| 166 |
+
}
|
| 167 |
+
}
|
cdr_info/8uky_H_L_C_cdr_info.json
ADDED
|
@@ -0,0 +1,169 @@
|
|
|
|
|
|
|
|
|
|
|
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|
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|
|
|
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|
|
|
|
|
|
|
|
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|
|
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|
|
|
|
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|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
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|
|
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|
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|
|
|
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|
|
|
|
|
|
|
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|
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|
|
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|
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|
|
|
|
|
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|
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|
|
|
|
|
|
|
|
|
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|
|
|
|
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|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"entry_name": "8uky_H_L_C",
|
| 3 |
+
"heavy_chain_id": "H",
|
| 4 |
+
"light_chain_id": "L",
|
| 5 |
+
"chain_mapping": {
|
| 6 |
+
"protenix_to_original": {
|
| 7 |
+
"A": "L",
|
| 8 |
+
"B": "H",
|
| 9 |
+
"C": "C"
|
| 10 |
+
},
|
| 11 |
+
"original_to_protenix": {
|
| 12 |
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"L": "A",
|
| 13 |
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"H": "B",
|
| 14 |
+
"C": "C"
|
| 15 |
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},
|
| 16 |
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"sequence_order": [
|
| 17 |
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{
|
| 18 |
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"protenix_chain": "A",
|
| 19 |
+
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|
| 20 |
+
"seq_len": 213,
|
| 21 |
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"entity_type": "proteinChain"
|
| 22 |
+
},
|
| 23 |
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{
|
| 24 |
+
"protenix_chain": "B",
|
| 25 |
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|
| 26 |
+
"seq_len": 219,
|
| 27 |
+
"entity_type": "proteinChain"
|
| 28 |
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},
|
| 29 |
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{
|
| 30 |
+
"protenix_chain": "C",
|
| 31 |
+
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|
| 32 |
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"seq_len": 170,
|
| 33 |
+
"entity_type": "proteinChain"
|
| 34 |
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}
|
| 35 |
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]
|
| 36 |
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},
|
| 37 |
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|
| 38 |
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|
| 39 |
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|
| 40 |
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|
| 41 |
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|
| 42 |
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
| 57 |
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|
| 58 |
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|
| 59 |
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|
| 60 |
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|
| 61 |
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|
| 62 |
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|
| 63 |
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|
| 64 |
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|
| 65 |
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|
| 66 |
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|
| 67 |
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|
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|
| 69 |
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|
| 70 |
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|
| 71 |
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|
| 72 |
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|
| 73 |
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|
| 74 |
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},
|
| 75 |
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|
| 76 |
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|
| 77 |
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|
| 78 |
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|
| 79 |
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|
| 80 |
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|
| 81 |
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|
| 82 |
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|
| 83 |
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|
| 84 |
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|
| 85 |
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|
| 86 |
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|
| 87 |
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|
| 88 |
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|
| 89 |
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|
| 90 |
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|
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|
| 92 |
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|
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|
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|
| 95 |
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|
| 96 |
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|
| 97 |
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|
| 98 |
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|
| 99 |
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|
| 100 |
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|
| 101 |
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|
| 102 |
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|
| 103 |
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|
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|
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|
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|
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|
| 108 |
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|
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|
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|
| 111 |
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|
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|
| 113 |
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
| 124 |
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|
| 125 |
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|
| 126 |
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|
| 127 |
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|
| 128 |
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|
| 129 |
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|
| 130 |
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|
| 131 |
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|
| 132 |
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|
| 133 |
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|
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|
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|
| 136 |
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|
| 137 |
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|
| 138 |
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|
| 139 |
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|
| 140 |
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|
| 141 |
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|
| 142 |
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|
| 143 |
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},
|
| 144 |
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|
| 145 |
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|
| 146 |
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|
| 147 |
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|
| 148 |
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|
| 149 |
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|
| 150 |
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|
| 151 |
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|
| 152 |
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|
| 153 |
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|
| 154 |
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|
| 155 |
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|
| 156 |
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|
| 157 |
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|
| 158 |
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|
| 159 |
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|
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|
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|
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|
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|
| 164 |
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|
| 165 |
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|
| 166 |
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}
|
| 167 |
+
}
|
| 168 |
+
}
|
| 169 |
+
}
|
cdr_info/8ulj_H_L_AB_cdr_info.json
ADDED
|
@@ -0,0 +1,189 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"entry_name": "8ulj_H_L_AB",
|
| 3 |
+
"heavy_chain_id": "H",
|
| 4 |
+
"light_chain_id": "L",
|
| 5 |
+
"chain_mapping": {
|
| 6 |
+
"protenix_to_original": {
|
| 7 |
+
"A": "A",
|
| 8 |
+
"B": "L",
|
| 9 |
+
"C": "H",
|
| 10 |
+
"D": "B"
|
| 11 |
+
},
|
| 12 |
+
"original_to_protenix": {
|
| 13 |
+
"A": "A",
|
| 14 |
+
"L": "B",
|
| 15 |
+
"H": "C",
|
| 16 |
+
"B": "D"
|
| 17 |
+
},
|
| 18 |
+
"sequence_order": [
|
| 19 |
+
{
|
| 20 |
+
"protenix_chain": "A",
|
| 21 |
+
"original_chain": "A",
|
| 22 |
+
"seq_len": 79,
|
| 23 |
+
"entity_type": "proteinChain"
|
| 24 |
+
},
|
| 25 |
+
{
|
| 26 |
+
"protenix_chain": "B",
|
| 27 |
+
"original_chain": "L",
|
| 28 |
+
"seq_len": 214,
|
| 29 |
+
"entity_type": "proteinChain"
|
| 30 |
+
},
|
| 31 |
+
{
|
| 32 |
+
"protenix_chain": "C",
|
| 33 |
+
"original_chain": "H",
|
| 34 |
+
"seq_len": 242,
|
| 35 |
+
"entity_type": "proteinChain"
|
| 36 |
+
},
|
| 37 |
+
{
|
| 38 |
+
"protenix_chain": "D",
|
| 39 |
+
"original_chain": "B",
|
| 40 |
+
"seq_len": 414,
|
| 41 |
+
"entity_type": "proteinChain"
|
| 42 |
+
}
|
| 43 |
+
]
|
| 44 |
+
},
|
| 45 |
+
"cdr_info": {
|
| 46 |
+
"H_chain": {
|
| 47 |
+
"cdr_indices": [
|
| 48 |
+
25,
|
| 49 |
+
26,
|
| 50 |
+
27,
|
| 51 |
+
28,
|
| 52 |
+
29,
|
| 53 |
+
30,
|
| 54 |
+
31,
|
| 55 |
+
51,
|
| 56 |
+
52,
|
| 57 |
+
53,
|
| 58 |
+
54,
|
| 59 |
+
55,
|
| 60 |
+
56,
|
| 61 |
+
98,
|
| 62 |
+
99,
|
| 63 |
+
100,
|
| 64 |
+
101,
|
| 65 |
+
102,
|
| 66 |
+
103,
|
| 67 |
+
104,
|
| 68 |
+
105,
|
| 69 |
+
106,
|
| 70 |
+
107,
|
| 71 |
+
108,
|
| 72 |
+
109
|
| 73 |
+
],
|
| 74 |
+
"variable_domain_start_res_id": 1,
|
| 75 |
+
"cdr1": {
|
| 76 |
+
"indices": [
|
| 77 |
+
25,
|
| 78 |
+
26,
|
| 79 |
+
27,
|
| 80 |
+
28,
|
| 81 |
+
29,
|
| 82 |
+
30,
|
| 83 |
+
31
|
| 84 |
+
]
|
| 85 |
+
},
|
| 86 |
+
"cdr2": {
|
| 87 |
+
"indices": [
|
| 88 |
+
51,
|
| 89 |
+
52,
|
| 90 |
+
53,
|
| 91 |
+
54,
|
| 92 |
+
55,
|
| 93 |
+
56
|
| 94 |
+
]
|
| 95 |
+
},
|
| 96 |
+
"cdr3": {
|
| 97 |
+
"indices": [
|
| 98 |
+
98,
|
| 99 |
+
99,
|
| 100 |
+
100,
|
| 101 |
+
101,
|
| 102 |
+
102,
|
| 103 |
+
103,
|
| 104 |
+
104,
|
| 105 |
+
105,
|
| 106 |
+
106,
|
| 107 |
+
107,
|
| 108 |
+
108,
|
| 109 |
+
109
|
| 110 |
+
]
|
| 111 |
+
}
|
| 112 |
+
},
|
| 113 |
+
"L_chain": {
|
| 114 |
+
"cdr_indices": [
|
| 115 |
+
20,
|
| 116 |
+
21,
|
| 117 |
+
22,
|
| 118 |
+
23,
|
| 119 |
+
24,
|
| 120 |
+
25,
|
| 121 |
+
26,
|
| 122 |
+
27,
|
| 123 |
+
28,
|
| 124 |
+
29,
|
| 125 |
+
30,
|
| 126 |
+
31,
|
| 127 |
+
47,
|
| 128 |
+
48,
|
| 129 |
+
49,
|
| 130 |
+
50,
|
| 131 |
+
51,
|
| 132 |
+
52,
|
| 133 |
+
53,
|
| 134 |
+
86,
|
| 135 |
+
87,
|
| 136 |
+
88,
|
| 137 |
+
89,
|
| 138 |
+
90,
|
| 139 |
+
91,
|
| 140 |
+
92,
|
| 141 |
+
93,
|
| 142 |
+
94,
|
| 143 |
+
95
|
| 144 |
+
],
|
| 145 |
+
"variable_domain_start_res_id": 2,
|
| 146 |
+
"cdr1": {
|
| 147 |
+
"indices": [
|
| 148 |
+
20,
|
| 149 |
+
21,
|
| 150 |
+
22,
|
| 151 |
+
23,
|
| 152 |
+
24,
|
| 153 |
+
25,
|
| 154 |
+
26,
|
| 155 |
+
27,
|
| 156 |
+
28,
|
| 157 |
+
29,
|
| 158 |
+
30,
|
| 159 |
+
31
|
| 160 |
+
]
|
| 161 |
+
},
|
| 162 |
+
"cdr2": {
|
| 163 |
+
"indices": [
|
| 164 |
+
47,
|
| 165 |
+
48,
|
| 166 |
+
49,
|
| 167 |
+
50,
|
| 168 |
+
51,
|
| 169 |
+
52,
|
| 170 |
+
53
|
| 171 |
+
]
|
| 172 |
+
},
|
| 173 |
+
"cdr3": {
|
| 174 |
+
"indices": [
|
| 175 |
+
86,
|
| 176 |
+
87,
|
| 177 |
+
88,
|
| 178 |
+
89,
|
| 179 |
+
90,
|
| 180 |
+
91,
|
| 181 |
+
92,
|
| 182 |
+
93,
|
| 183 |
+
94,
|
| 184 |
+
95
|
| 185 |
+
]
|
| 186 |
+
}
|
| 187 |
+
}
|
| 188 |
+
}
|
| 189 |
+
}
|
cdr_info/8uoa_B__A_cdr_info.json
ADDED
|
@@ -0,0 +1,94 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"entry_name": "8uoa_B__A",
|
| 3 |
+
"heavy_chain_id": "B",
|
| 4 |
+
"light_chain_id": null,
|
| 5 |
+
"chain_mapping": {
|
| 6 |
+
"protenix_to_original": {
|
| 7 |
+
"A": "A",
|
| 8 |
+
"B": "B"
|
| 9 |
+
},
|
| 10 |
+
"original_to_protenix": {
|
| 11 |
+
"A": "A",
|
| 12 |
+
"B": "B"
|
| 13 |
+
},
|
| 14 |
+
"sequence_order": [
|
| 15 |
+
{
|
| 16 |
+
"protenix_chain": "A",
|
| 17 |
+
"original_chain": "A",
|
| 18 |
+
"seq_len": 680,
|
| 19 |
+
"entity_type": "proteinChain"
|
| 20 |
+
},
|
| 21 |
+
{
|
| 22 |
+
"protenix_chain": "B",
|
| 23 |
+
"original_chain": "B",
|
| 24 |
+
"seq_len": 142,
|
| 25 |
+
"entity_type": "proteinChain"
|
| 26 |
+
}
|
| 27 |
+
]
|
| 28 |
+
},
|
| 29 |
+
"cdr_info": {
|
| 30 |
+
"H_chain": {
|
| 31 |
+
"cdr_indices": [
|
| 32 |
+
25,
|
| 33 |
+
26,
|
| 34 |
+
27,
|
| 35 |
+
28,
|
| 36 |
+
29,
|
| 37 |
+
30,
|
| 38 |
+
31,
|
| 39 |
+
51,
|
| 40 |
+
52,
|
| 41 |
+
53,
|
| 42 |
+
54,
|
| 43 |
+
55,
|
| 44 |
+
97,
|
| 45 |
+
98,
|
| 46 |
+
99,
|
| 47 |
+
100,
|
| 48 |
+
101,
|
| 49 |
+
102,
|
| 50 |
+
103,
|
| 51 |
+
104,
|
| 52 |
+
105,
|
| 53 |
+
106,
|
| 54 |
+
107
|
| 55 |
+
],
|
| 56 |
+
"variable_domain_start_res_id": 1,
|
| 57 |
+
"cdr1": {
|
| 58 |
+
"indices": [
|
| 59 |
+
25,
|
| 60 |
+
26,
|
| 61 |
+
27,
|
| 62 |
+
28,
|
| 63 |
+
29,
|
| 64 |
+
30,
|
| 65 |
+
31
|
| 66 |
+
]
|
| 67 |
+
},
|
| 68 |
+
"cdr2": {
|
| 69 |
+
"indices": [
|
| 70 |
+
51,
|
| 71 |
+
52,
|
| 72 |
+
53,
|
| 73 |
+
54,
|
| 74 |
+
55
|
| 75 |
+
]
|
| 76 |
+
},
|
| 77 |
+
"cdr3": {
|
| 78 |
+
"indices": [
|
| 79 |
+
97,
|
| 80 |
+
98,
|
| 81 |
+
99,
|
| 82 |
+
100,
|
| 83 |
+
101,
|
| 84 |
+
102,
|
| 85 |
+
103,
|
| 86 |
+
104,
|
| 87 |
+
105,
|
| 88 |
+
106,
|
| 89 |
+
107
|
| 90 |
+
]
|
| 91 |
+
}
|
| 92 |
+
}
|
| 93 |
+
}
|
| 94 |
+
}
|
cdr_info/8v4f_B_D_A_cdr_info.json
ADDED
|
@@ -0,0 +1,171 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"entry_name": "8v4f_B_D_A",
|
| 3 |
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"heavy_chain_id": "B",
|
| 4 |
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|
| 5 |
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|
| 6 |
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|
| 7 |
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"A": "B",
|
| 8 |
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"B": "D",
|
| 9 |
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"C": "A"
|
| 10 |
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},
|
| 11 |
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"original_to_protenix": {
|
| 12 |
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"B": "A",
|
| 13 |
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"D": "B",
|
| 14 |
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"A": "C"
|
| 15 |
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},
|
| 16 |
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"sequence_order": [
|
| 17 |
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{
|
| 18 |
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"protenix_chain": "A",
|
| 19 |
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|
| 20 |
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|
| 21 |
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|
| 22 |
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|
| 23 |
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{
|
| 24 |
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|
| 25 |
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|
| 26 |
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|
| 27 |
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|
| 28 |
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|
| 29 |
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{
|
| 30 |
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"protenix_chain": "C",
|
| 31 |
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|
| 32 |
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"seq_len": 193,
|
| 33 |
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"entity_type": "proteinChain"
|
| 34 |
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}
|
| 35 |
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]
|
| 36 |
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},
|
| 37 |
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"cdr_info": {
|
| 38 |
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"H_chain": {
|
| 39 |
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"cdr_indices": [
|
| 40 |
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25,
|
| 41 |
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|
| 42 |
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|
| 43 |
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|
| 44 |
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| 55 |
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|
| 57 |
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|
| 58 |
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|
| 59 |
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|
| 60 |
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|
| 61 |
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|
| 62 |
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"variable_domain_start_res_id": 1,
|
| 63 |
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|
| 64 |
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|
| 65 |
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|
| 66 |
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| 67 |
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|
| 70 |
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| 71 |
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|
| 72 |
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|
| 73 |
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|
| 74 |
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|
| 75 |
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|
| 76 |
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|
| 77 |
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|
| 78 |
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|
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| 80 |
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|
| 81 |
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|
| 82 |
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|
| 83 |
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|
| 84 |
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|
| 85 |
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|
| 86 |
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|
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|
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|
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|
| 93 |
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|
| 94 |
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|
| 95 |
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|
| 96 |
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|
| 97 |
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|
| 98 |
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|
| 99 |
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|
| 100 |
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|
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|
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|
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|
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|
| 127 |
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|
| 128 |
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|
| 129 |
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|
| 130 |
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|
| 131 |
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|
| 132 |
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|
| 133 |
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|
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|
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|
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|
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|
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|
| 139 |
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|
| 140 |
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|
| 141 |
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|
| 142 |
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|
| 143 |
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|
| 144 |
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|
| 145 |
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|
| 146 |
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|
| 147 |
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|
| 148 |
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|
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|
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|
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|
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|
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|
| 154 |
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|
| 155 |
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|
| 156 |
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|
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|
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|
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|
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|
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|
| 167 |
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|
| 168 |
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|
| 169 |
+
}
|
| 170 |
+
}
|
| 171 |
+
}
|
cdr_info/8v7o_H_L_A_cdr_info.json
ADDED
|
@@ -0,0 +1,189 @@
|
|
|
|
|
|
|
|
|
|
|
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|
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|
|
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|
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|
|
|
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|
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|
|
|
|
|
|
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|
|
|
|
|
|
|
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|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
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|
|
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|
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|
|
|
|
|
|
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|
|
|
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|
|
|
|
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|
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|
|
|
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|
|
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|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
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|
|
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|
|
|
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|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"entry_name": "8v7o_H_L_A",
|
| 3 |
+
"heavy_chain_id": "H",
|
| 4 |
+
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|
| 5 |
+
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|
| 6 |
+
"protenix_to_original": {
|
| 7 |
+
"A": "A",
|
| 8 |
+
"B": "H",
|
| 9 |
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"C": "L"
|
| 10 |
+
},
|
| 11 |
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"original_to_protenix": {
|
| 12 |
+
"A": "A",
|
| 13 |
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"H": "B",
|
| 14 |
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"L": "C"
|
| 15 |
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},
|
| 16 |
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|
| 17 |
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{
|
| 18 |
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|
| 19 |
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|
| 20 |
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|
| 21 |
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|
| 22 |
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},
|
| 23 |
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{
|
| 24 |
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|
| 25 |
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|
| 26 |
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|
| 27 |
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|
| 28 |
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|
| 29 |
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{
|
| 30 |
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|
| 31 |
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|
| 32 |
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|
| 33 |
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|
| 34 |
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}
|
| 35 |
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]
|
| 36 |
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},
|
| 37 |
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|
| 38 |
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|
| 39 |
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|
| 40 |
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|
| 41 |
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|
| 42 |
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|
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|
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|
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|
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|
| 56 |
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|
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|
| 58 |
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|
| 59 |
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|
| 60 |
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|
| 61 |
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|
| 62 |
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|
| 63 |
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|
| 64 |
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|
| 65 |
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|
| 66 |
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|
| 67 |
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|
| 68 |
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|
| 69 |
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|
| 70 |
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"variable_domain_start_res_id": 1,
|
| 71 |
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|
| 72 |
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|
| 73 |
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|
| 74 |
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|
| 75 |
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|
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|
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|
| 78 |
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|
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|
| 80 |
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|
| 81 |
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|
| 82 |
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|
| 83 |
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|
| 84 |
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|
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|
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|
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|
| 89 |
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|
| 90 |
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|
| 91 |
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|
| 92 |
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|
| 93 |
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|
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|
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|
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|
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|
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|
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|
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|
| 111 |
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|
| 112 |
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|
| 113 |
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|
| 114 |
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|
| 115 |
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
| 143 |
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|
| 144 |
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|
| 145 |
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|
| 146 |
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|
| 147 |
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|
| 148 |
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
| 158 |
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|
| 159 |
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|
| 160 |
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|
| 161 |
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|
| 162 |
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|
| 163 |
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|
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|
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|
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|
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|
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|
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|
| 170 |
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|
| 171 |
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|
| 172 |
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|
| 173 |
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|
| 174 |
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
| 185 |
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|
| 186 |
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|
| 187 |
+
}
|
| 188 |
+
}
|
| 189 |
+
}
|
cdr_info/8vdf_H_L_A_cdr_info.json
ADDED
|
@@ -0,0 +1,193 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
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|
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|
|
|
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|
|
|
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|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"entry_name": "8vdf_H_L_A",
|
| 3 |
+
"heavy_chain_id": "H",
|
| 4 |
+
"light_chain_id": "L",
|
| 5 |
+
"chain_mapping": {
|
| 6 |
+
"protenix_to_original": {
|
| 7 |
+
"A": "A",
|
| 8 |
+
"B": "H",
|
| 9 |
+
"C": "L"
|
| 10 |
+
},
|
| 11 |
+
"original_to_protenix": {
|
| 12 |
+
"A": "A",
|
| 13 |
+
"H": "B",
|
| 14 |
+
"L": "C"
|
| 15 |
+
},
|
| 16 |
+
"sequence_order": [
|
| 17 |
+
{
|
| 18 |
+
"protenix_chain": "A",
|
| 19 |
+
"original_chain": "A",
|
| 20 |
+
"seq_len": 1153,
|
| 21 |
+
"entity_type": "proteinChain"
|
| 22 |
+
},
|
| 23 |
+
{
|
| 24 |
+
"protenix_chain": "B",
|
| 25 |
+
"original_chain": "H",
|
| 26 |
+
"seq_len": 227,
|
| 27 |
+
"entity_type": "proteinChain"
|
| 28 |
+
},
|
| 29 |
+
{
|
| 30 |
+
"protenix_chain": "C",
|
| 31 |
+
"original_chain": "L",
|
| 32 |
+
"seq_len": 212,
|
| 33 |
+
"entity_type": "proteinChain"
|
| 34 |
+
}
|
| 35 |
+
]
|
| 36 |
+
},
|
| 37 |
+
"cdr_info": {
|
| 38 |
+
"H_chain": {
|
| 39 |
+
"cdr_indices": [
|
| 40 |
+
25,
|
| 41 |
+
26,
|
| 42 |
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|
| 43 |
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|
| 44 |
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|
| 45 |
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|
| 46 |
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|
| 47 |
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|
| 48 |
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|
| 49 |
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|
| 50 |
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|
| 51 |
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|
| 52 |
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|
| 53 |
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|
| 54 |
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|
| 55 |
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|
| 56 |
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|
| 57 |
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|
| 58 |
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|
| 59 |
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104,
|
| 60 |
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105,
|
| 61 |
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106,
|
| 62 |
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107,
|
| 63 |
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|
| 64 |
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109,
|
| 65 |
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110,
|
| 66 |
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111,
|
| 67 |
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112,
|
| 68 |
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113,
|
| 69 |
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114,
|
| 70 |
+
115,
|
| 71 |
+
116,
|
| 72 |
+
117
|
| 73 |
+
],
|
| 74 |
+
"variable_domain_start_res_id": 1,
|
| 75 |
+
"cdr1": {
|
| 76 |
+
"indices": [
|
| 77 |
+
25,
|
| 78 |
+
26,
|
| 79 |
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27,
|
| 80 |
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28,
|
| 81 |
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29,
|
| 82 |
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30,
|
| 83 |
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31
|
| 84 |
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]
|
| 85 |
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},
|
| 86 |
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"cdr2": {
|
| 87 |
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"indices": [
|
| 88 |
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51,
|
| 89 |
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|
| 90 |
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|
| 91 |
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|
| 92 |
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|
| 93 |
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|
| 94 |
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|
| 95 |
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|
| 96 |
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"cdr3": {
|
| 97 |
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|
| 98 |
+
98,
|
| 99 |
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|
| 100 |
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|
| 101 |
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|
| 102 |
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102,
|
| 103 |
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103,
|
| 104 |
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104,
|
| 105 |
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|
| 106 |
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|
| 107 |
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|
| 108 |
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108,
|
| 109 |
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109,
|
| 110 |
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110,
|
| 111 |
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111,
|
| 112 |
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112,
|
| 113 |
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113,
|
| 114 |
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|
| 115 |
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115,
|
| 116 |
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116,
|
| 117 |
+
117
|
| 118 |
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]
|
| 119 |
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}
|
| 120 |
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},
|
| 121 |
+
"L_chain": {
|
| 122 |
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|
| 123 |
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|
| 124 |
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23,
|
| 125 |
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|
| 126 |
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|
| 127 |
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|
| 128 |
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27,
|
| 129 |
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|
| 130 |
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|
| 131 |
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|
| 132 |
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|
| 133 |
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|
| 134 |
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|
| 135 |
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|
| 136 |
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|
| 137 |
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|
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|
| 139 |
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|
| 140 |
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|
| 141 |
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|
| 142 |
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|
| 143 |
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|
| 144 |
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|
| 145 |
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|
| 146 |
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|
| 147 |
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93,
|
| 148 |
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|
| 149 |
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95
|
| 150 |
+
],
|
| 151 |
+
"variable_domain_start_res_id": 1,
|
| 152 |
+
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|
| 153 |
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|
| 154 |
+
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|
| 155 |
+
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|
| 156 |
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|
| 157 |
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|
| 158 |
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26,
|
| 159 |
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27,
|
| 160 |
+
28,
|
| 161 |
+
29,
|
| 162 |
+
30
|
| 163 |
+
]
|
| 164 |
+
},
|
| 165 |
+
"cdr2": {
|
| 166 |
+
"indices": [
|
| 167 |
+
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|
| 168 |
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|
| 169 |
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|
| 170 |
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|
| 171 |
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50,
|
| 172 |
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51,
|
| 173 |
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52
|
| 174 |
+
]
|
| 175 |
+
},
|
| 176 |
+
"cdr3": {
|
| 177 |
+
"indices": [
|
| 178 |
+
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|
| 179 |
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|
| 180 |
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|
| 181 |
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|
| 182 |
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|
| 183 |
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|
| 184 |
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|
| 185 |
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|
| 186 |
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93,
|
| 187 |
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94,
|
| 188 |
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95
|
| 189 |
+
]
|
| 190 |
+
}
|
| 191 |
+
}
|
| 192 |
+
}
|
| 193 |
+
}
|
cdr_info/8vk1_F_E_D_cdr_info.json
ADDED
|
@@ -0,0 +1,181 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"entry_name": "8vk1_F_E_D",
|
| 3 |
+
"heavy_chain_id": "F",
|
| 4 |
+
"light_chain_id": "E",
|
| 5 |
+
"chain_mapping": {
|
| 6 |
+
"protenix_to_original": {
|
| 7 |
+
"A": "E",
|
| 8 |
+
"B": "D",
|
| 9 |
+
"C": "F"
|
| 10 |
+
},
|
| 11 |
+
"original_to_protenix": {
|
| 12 |
+
"E": "A",
|
| 13 |
+
"D": "B",
|
| 14 |
+
"F": "C"
|
| 15 |
+
},
|
| 16 |
+
"sequence_order": [
|
| 17 |
+
{
|
| 18 |
+
"protenix_chain": "A",
|
| 19 |
+
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|
| 20 |
+
"seq_len": 212,
|
| 21 |
+
"entity_type": "proteinChain"
|
| 22 |
+
},
|
| 23 |
+
{
|
| 24 |
+
"protenix_chain": "B",
|
| 25 |
+
"original_chain": "D",
|
| 26 |
+
"seq_len": 129,
|
| 27 |
+
"entity_type": "proteinChain"
|
| 28 |
+
},
|
| 29 |
+
{
|
| 30 |
+
"protenix_chain": "C",
|
| 31 |
+
"original_chain": "F",
|
| 32 |
+
"seq_len": 232,
|
| 33 |
+
"entity_type": "proteinChain"
|
| 34 |
+
}
|
| 35 |
+
]
|
| 36 |
+
},
|
| 37 |
+
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|
| 38 |
+
"H_chain": {
|
| 39 |
+
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|
| 40 |
+
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|
| 41 |
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|
| 42 |
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|
| 43 |
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|
| 44 |
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|
| 45 |
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|
| 46 |
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|
| 47 |
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|
| 48 |
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|
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|
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|
| 51 |
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|
| 52 |
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|
| 53 |
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|
| 54 |
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|
| 55 |
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|
| 56 |
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|
| 57 |
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|
| 58 |
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|
| 59 |
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|
| 60 |
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|
| 61 |
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|
| 62 |
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107,
|
| 63 |
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108,
|
| 64 |
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109,
|
| 65 |
+
110,
|
| 66 |
+
111
|
| 67 |
+
],
|
| 68 |
+
"variable_domain_start_res_id": 1,
|
| 69 |
+
"cdr1": {
|
| 70 |
+
"indices": [
|
| 71 |
+
25,
|
| 72 |
+
26,
|
| 73 |
+
27,
|
| 74 |
+
28,
|
| 75 |
+
29,
|
| 76 |
+
30,
|
| 77 |
+
31
|
| 78 |
+
]
|
| 79 |
+
},
|
| 80 |
+
"cdr2": {
|
| 81 |
+
"indices": [
|
| 82 |
+
51,
|
| 83 |
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52,
|
| 84 |
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53,
|
| 85 |
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54,
|
| 86 |
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55,
|
| 87 |
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56
|
| 88 |
+
]
|
| 89 |
+
},
|
| 90 |
+
"cdr3": {
|
| 91 |
+
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|
| 92 |
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|
| 93 |
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|
| 94 |
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|
| 95 |
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|
| 96 |
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|
| 97 |
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|
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|
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|
| 100 |
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|
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|
| 102 |
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|
| 103 |
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|
| 104 |
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110,
|
| 105 |
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111
|
| 106 |
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|
| 107 |
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}
|
| 108 |
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},
|
| 109 |
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"L_chain": {
|
| 110 |
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|
| 111 |
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22,
|
| 112 |
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23,
|
| 113 |
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24,
|
| 114 |
+
25,
|
| 115 |
+
26,
|
| 116 |
+
27,
|
| 117 |
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28,
|
| 118 |
+
29,
|
| 119 |
+
30,
|
| 120 |
+
31,
|
| 121 |
+
32,
|
| 122 |
+
48,
|
| 123 |
+
49,
|
| 124 |
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50,
|
| 125 |
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51,
|
| 126 |
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|
| 127 |
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|
| 128 |
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|
| 129 |
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|
| 130 |
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|
| 131 |
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|
| 132 |
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|
| 133 |
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|
| 134 |
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|
| 135 |
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|
| 136 |
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|
| 137 |
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95
|
| 138 |
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],
|
| 139 |
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"variable_domain_start_res_id": 1,
|
| 140 |
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|
| 141 |
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"indices": [
|
| 142 |
+
22,
|
| 143 |
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|
| 144 |
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|
| 145 |
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|
| 146 |
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|
| 147 |
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|
| 148 |
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|
| 149 |
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|
| 150 |
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|
| 151 |
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|
| 152 |
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|
| 153 |
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|
| 154 |
+
},
|
| 155 |
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"cdr2": {
|
| 156 |
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|
| 157 |
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|
| 158 |
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|
| 159 |
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|
| 160 |
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|
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|
| 162 |
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|
| 163 |
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|
| 164 |
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|
| 165 |
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|
| 166 |
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"cdr3": {
|
| 167 |
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|
| 168 |
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|
| 169 |
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|
| 170 |
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|
| 171 |
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|
| 172 |
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|
| 173 |
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|
| 174 |
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|
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|
| 176 |
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|
| 177 |
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|
| 178 |
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|
| 179 |
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}
|
| 180 |
+
}
|
| 181 |
+
}
|
cdr_info/8vuh_H_L_A_cdr_info.json
ADDED
|
@@ -0,0 +1,179 @@
|
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|
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|
|
|
|
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|
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|
|
|
|
|
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|
|
|
|
|
|
|
|
|
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|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
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|
|
|
|
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|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"entry_name": "8vuh_H_L_A",
|
| 3 |
+
"heavy_chain_id": "H",
|
| 4 |
+
"light_chain_id": "L",
|
| 5 |
+
"chain_mapping": {
|
| 6 |
+
"protenix_to_original": {
|
| 7 |
+
"A": "A",
|
| 8 |
+
"B": "H",
|
| 9 |
+
"C": "L"
|
| 10 |
+
},
|
| 11 |
+
"original_to_protenix": {
|
| 12 |
+
"A": "A",
|
| 13 |
+
"H": "B",
|
| 14 |
+
"L": "C"
|
| 15 |
+
},
|
| 16 |
+
"sequence_order": [
|
| 17 |
+
{
|
| 18 |
+
"protenix_chain": "A",
|
| 19 |
+
"original_chain": "A",
|
| 20 |
+
"seq_len": 815,
|
| 21 |
+
"entity_type": "proteinChain"
|
| 22 |
+
},
|
| 23 |
+
{
|
| 24 |
+
"protenix_chain": "B",
|
| 25 |
+
"original_chain": "H",
|
| 26 |
+
"seq_len": 117,
|
| 27 |
+
"entity_type": "proteinChain"
|
| 28 |
+
},
|
| 29 |
+
{
|
| 30 |
+
"protenix_chain": "C",
|
| 31 |
+
"original_chain": "L",
|
| 32 |
+
"seq_len": 109,
|
| 33 |
+
"entity_type": "proteinChain"
|
| 34 |
+
}
|
| 35 |
+
]
|
| 36 |
+
},
|
| 37 |
+
"cdr_info": {
|
| 38 |
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"H_chain": {
|
| 39 |
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"cdr_indices": [
|
| 40 |
+
24,
|
| 41 |
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25,
|
| 42 |
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|
| 43 |
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27,
|
| 44 |
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|
| 45 |
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|
| 46 |
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|
| 47 |
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|
| 48 |
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|
| 49 |
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|
| 50 |
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|
| 51 |
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|
| 52 |
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|
| 53 |
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|
| 54 |
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|
| 55 |
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|
| 56 |
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|
| 57 |
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101,
|
| 58 |
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102,
|
| 59 |
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103,
|
| 60 |
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104,
|
| 61 |
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105,
|
| 62 |
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106,
|
| 63 |
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107
|
| 64 |
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],
|
| 65 |
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"variable_domain_start_res_id": 1,
|
| 66 |
+
"cdr1": {
|
| 67 |
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"indices": [
|
| 68 |
+
24,
|
| 69 |
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25,
|
| 70 |
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26,
|
| 71 |
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27,
|
| 72 |
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28,
|
| 73 |
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29,
|
| 74 |
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30,
|
| 75 |
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31
|
| 76 |
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]
|
| 77 |
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},
|
| 78 |
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"cdr2": {
|
| 79 |
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"indices": [
|
| 80 |
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51,
|
| 81 |
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52,
|
| 82 |
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53,
|
| 83 |
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54,
|
| 84 |
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55
|
| 85 |
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]
|
| 86 |
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},
|
| 87 |
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"cdr3": {
|
| 88 |
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|
| 89 |
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|
| 90 |
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|
| 91 |
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|
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|
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|
| 94 |
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|
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|
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|
| 97 |
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|
| 98 |
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|
| 99 |
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107
|
| 100 |
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|
| 101 |
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}
|
| 102 |
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},
|
| 103 |
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"L_chain": {
|
| 104 |
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|
| 105 |
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|
| 106 |
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|
| 107 |
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|
| 108 |
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|
| 109 |
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|
| 110 |
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|
| 111 |
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|
| 112 |
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|
| 113 |
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|
| 114 |
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|
| 115 |
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|
| 116 |
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|
| 117 |
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|
| 118 |
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|
| 119 |
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|
| 120 |
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|
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|
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|
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|
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|
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|
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|
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|
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|
| 130 |
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|
| 131 |
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97,
|
| 132 |
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98,
|
| 133 |
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99
|
| 134 |
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|
| 135 |
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"variable_domain_start_res_id": 1,
|
| 136 |
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|
| 137 |
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|
| 138 |
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|
| 139 |
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|
| 140 |
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|
| 141 |
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|
| 142 |
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|
| 143 |
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|
| 144 |
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|
| 145 |
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|
| 146 |
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|
| 147 |
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|
| 148 |
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|
| 149 |
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|
| 150 |
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|
| 151 |
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|
| 152 |
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},
|
| 153 |
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"cdr2": {
|
| 154 |
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|
| 155 |
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|
| 156 |
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|
| 157 |
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|
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|
| 159 |
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|
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|
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|
| 162 |
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|
| 163 |
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|
| 164 |
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|
| 165 |
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|
| 166 |
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|
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|
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|
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|
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|
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|
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|
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|
| 174 |
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|
| 175 |
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|
| 176 |
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|
| 177 |
+
}
|
| 178 |
+
}
|
| 179 |
+
}
|