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b/cdr_info/9fzc_C__A_cdr_info.json new file mode 100644 index 0000000000000000000000000000000000000000..9b5e47c4fe69f4c80787b4bdf6259bbaf4c96573 --- /dev/null +++ b/cdr_info/9fzc_C__A_cdr_info.json @@ -0,0 +1,96 @@ +{ + "entry_name": "9fzc_C__A", + "heavy_chain_id": "C", + "light_chain_id": null, + "chain_mapping": { + "protenix_to_original": { + "A": "A", + "B": "C" + }, + "original_to_protenix": { + "A": "A", + "C": "B" + }, + "sequence_order": [ + { + "protenix_chain": "A", + "original_chain": "A", + "seq_len": 173, + "entity_type": "proteinChain" + }, + { + "protenix_chain": "B", + "original_chain": "C", + "seq_len": 123, + "entity_type": "proteinChain" + } + ] + }, + "cdr_info": { + "H_chain": { + "cdr_indices": [ + 25, + 26, + 27, + 28, + 29, + 30, + 31, + 32, + 33, + 53, + 54, + 55, + 56, + 57, + 99, + 100, + 101, + 102, + 103, + 104, + 105, + 106, + 107, + 108 + ], + "variable_domain_start_res_id": 4, + "cdr1": { + "indices": [ + 25, + 26, + 27, + 28, + 29, + 30, + 31, + 32, + 33 + ] + }, + "cdr2": { + "indices": [ + 53, + 54, + 55, + 56, + 57 + ] + }, + "cdr3": { + "indices": [ + 99, + 100, + 101, + 102, + 103, + 104, + 105, + 106, + 107, + 108 + ] + } + } + } +} \ No newline at end of file diff --git a/protenix_json/7vgs_D_C_A.json b/protenix_json/7vgs_D_C_A.json new file mode 100644 index 0000000000000000000000000000000000000000..b6c2f0d2a3547f6bc2f2c20185f6c76255e6522c --- /dev/null +++ b/protenix_json/7vgs_D_C_A.json @@ -0,0 +1,80 @@ +[ + { + "sequences": [ + { + "proteinChain": { + "sequence": "MHHHHHHHHDYKDDDDKENLYFQGMADSNGTITVEELKKLLEQWNLVIGFLFLTWICLLQFAYANRNRFLYIIKLIFLWLLWPVTLACFVLAAVYRINWITGGIAIAMACLVGLMWLSYFIASFRLFARTRSMWSFNPETNILLNVPLHGTILTRPLLESELVIGAVILRGHLRIAGHHLGRCDIKDLPKEITVATSRTLSYYKLGASQRVAGDSGFAAYSRYRIGNYKLNTDHSSSSDNIALLVQ", + "count": 1, + "label_entity_id": "1", + "label_asym_id": [ + "A" + ], + "auth_asym_id": [ + "A" + ] + } + }, + { + "proteinChain": { + "sequence": "DIVMTQSPASLAVSLGQRATISCKASQSIDYDGDNYMNWYQQKPGQPPKLLIYTTSNLESGIPARFSGSGSGTDFTLNIHPVEEGDAATYYCQQNNEDPYTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC", + "count": 1, + "label_entity_id": "2", + "label_asym_id": [ + "B" + ], + "auth_asym_id": [ + "C" + ] + } + }, + { + "proteinChain": { + "sequence": "EVQLQQSGPELVKPGASMKISCKTSGYSFTGYTMNWVKQSHGKNLEWIGLINPYNGDTSYNQKFKGKATLTVDKSSSTAYMELLSLTSEDSAVYYCEVINTYWGQGTLVTVSAAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPSETVTCNVAHPASSTKVDKKIVPRDCGCKPCICTVPEVSS", + "count": 1, + "label_entity_id": "3", + "label_asym_id": [ + "C" + ], + "auth_asym_id": [ + "D" + ] + } + } + ], + "covalent_bonds": [ + { + "entity1": 2, + "position1": 23, + "atom1": "SG", + "entity2": 2, + "position2": 92, + "atom2": "SG" + }, + { + "entity1": 2, + "position1": 138, + "atom1": "SG", + "entity2": 2, + "position2": 198, + "atom2": "SG" + }, + { + "entity1": 3, + "position1": 22, + "atom1": "SG", + "entity2": 3, + "position2": 96, + "atom2": "SG" + }, + { + "entity1": 3, + "position1": 140, + "atom1": "SG", + "entity2": 3, + "position2": 195, + "atom2": "SG" + } + ], + "name": "7vgs_D_C_A" + } +] \ No newline at end of file diff --git a/protenix_json/8euq_C_D_AB.json b/protenix_json/8euq_C_D_AB.json new file mode 100644 index 0000000000000000000000000000000000000000..29e8a730380d8b3c85c8515c436ffece0c66b474 --- /dev/null +++ b/protenix_json/8euq_C_D_AB.json @@ -0,0 +1,117 @@ +[ + { + "sequences": [ + { + "proteinChain": { + "sequence": "EEHVIIQAEFYLNPDQSGEFMFDFDGDEIFHVDMAKKETVWRLEEFGRFASFEAQGALANIAVDKANLEIMTKRSNYTPITNVPPEVTVLTNSPVELREPNVLICFIDKFTPPVVNVTWLRNGKPVTTGVSETVFLPREDHLFRKFHYLPFLPSTEDVYDCRVEHWGLDEPLLKHWEFDTSGENLYFQ", + "count": 1, + "label_entity_id": "1", + "label_asym_id": [ + "A" + ], + "auth_asym_id": [ + "A" + ] + } + }, + { + "proteinChain": { + "sequence": "DIQMTQSPSSLSASLGQRVSLTCRASQEISGYLTWLQQKPDGTIKRLVYAASTLDSGVPKRFSGSRSGSDYSLTISSLESEDFADYYCLQYTNYPLTFGAGTKLELKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC", + "count": 1, + "label_entity_id": "2", + "label_asym_id": [ + "B" + ], + "auth_asym_id": [ + "D" + ] + } + }, + { + "proteinChain": { + "sequence": "GAPKYVKQNTLKLATSGGSGSIEGRGSGDTRPRFLEQVKHECHFFNGTERVRFLDRYFYHQEEYVRFDSDVGEYRAVTELGRPDAEYWNSQKDLLEQKRAAVDTYCRHNYGVGESFTVQRRVYPEVTVYPAKTQPLQHHNLLVCSVNGFYPGSIEVRWFRNGQEEKTGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSLTSPLTVEWRATGGENLYFQ", + "count": 1, + "label_entity_id": "3", + "label_asym_id": [ + "E" + ], + "auth_asym_id": [ + "B" + ] + } + }, + { + "proteinChain": { + "sequence": "QVQLKESGPGLVAPSQSLSITCTVSGFSLTSYGVHWVRQPPGKGLEWLGVIWAGGSINYNSALMSRLSISKDNFKSQVFLKMSSLQTDDTAMYYCARAYGDYVHYAMDYWGQGTSVTASSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSC", + "count": 1, + "label_entity_id": "4", + "label_asym_id": [ + "F" + ], + "auth_asym_id": [ + "C" + ] + } + } + ], + "covalent_bonds": [ + { + "entity1": 1, + "position1": 105, + "atom1": "SG", + "entity2": 1, + "position2": 161, + "atom2": "SG" + }, + { + "entity1": 2, + "position1": 23, + "atom1": "SG", + "entity2": 2, + "position2": 88, + "atom2": "SG" + }, + { + "entity1": 2, + "position1": 134, + "atom1": "SG", + "entity2": 2, + "position2": 194, + "atom2": "SG" + }, + { + "entity1": 3, + "position1": 42, + "atom1": "SG", + "entity2": 3, + "position2": 106, + "atom2": "SG" + }, + { + "entity1": 3, + "position1": 144, + "atom1": "SG", + "entity2": 3, + "position2": 200, + "atom2": "SG" + }, + { + "entity1": 4, + "position1": 22, + "atom1": "SG", + "entity2": 4, + "position2": 95, + "atom2": "SG" + }, + { + "entity1": 4, + "position1": 147, + "atom1": "SG", + "entity2": 4, + "position2": 203, + "atom2": "SG" + } + ], + "name": "8euq_C_D_AB" + } +] \ No newline at end of file diff --git a/protenix_json/8q94_C__A.json b/protenix_json/8q94_C__A.json new file mode 100644 index 0000000000000000000000000000000000000000..279c23a72ba653d579cbeded33207d1915569f35 --- /dev/null +++ b/protenix_json/8q94_C__A.json @@ -0,0 +1,67 @@ +[ + { + "sequences": [ + { + "proteinChain": { + "sequence": "EGSNLCPFDEVFDATRFASVYAWNRKRISNCVADYSVLYNLAPFFTFKCYGVSPTKLNDLSFTNVYADSFVIRGDEVRQIAPGQTGNIADYNYKLPDDFTGCVIAWNSNKLDSKVSGNYNYLYRLFRKSNLKPFERDISTEIYQAGNKPCNGVAGFNCYFPLQSYGFRPTYGVGHQPYRVVVLSFEL", + "count": 1, + "label_entity_id": "1", + "label_asym_id": [ + "A" + ], + "auth_asym_id": [ + "A" + ] + } + }, + { + "proteinChain": { + "sequence": "GSQVQLVESGGGLVQPGGSLRLSCAISGITLDYYAVGWFLQAPGKEREGISCMRNWDGRTVYAPSVKGRFTISSDNAKKMVYLEMDNLKSEDTGVYYCAAGPLPPGISCRIPTPLGYDDWGQGTQVTVSSTS", + "count": 1, + "label_entity_id": "3", + "label_asym_id": [ + "C" + ], + "auth_asym_id": [ + "C" + ] + } + } + ], + "covalent_bonds": [ + { + "entity1": 1, + "position1": 6, + "atom1": "SG", + "entity2": 1, + "position2": 31, + "atom2": "SG" + }, + { + "entity1": 1, + "position1": 150, + "atom1": "SG", + "entity2": 1, + "position2": 158, + "atom2": "SG" + }, + { + "entity1": 2, + "position1": 24, + "atom1": "SG", + "entity2": 2, + "position2": 98, + "atom2": "SG" + }, + { + "entity1": 2, + "position1": 52, + "atom1": "SG", + "entity2": 2, + "position2": 109, + "atom2": "SG" + } + ], + "name": "8q94_C__A" + } +] \ No newline at end of file diff --git a/protenix_json/8qot_B__A.json b/protenix_json/8qot_B__A.json new file mode 100644 index 0000000000000000000000000000000000000000..c098d680bf35c3e9a6c727b4133b480f07332e41 --- /dev/null +++ b/protenix_json/8qot_B__A.json @@ -0,0 +1,51 @@ +[ + { + "sequences": [ + { + "proteinChain": { + "sequence": "MKTIIALSYIFCLVFADYKDDDDAMGPGNISDCSDPLAPASCSPAPGSWLNLSHVDGNQSDPCGPNRTGLGENLYFQGSHSLCPQTGSPSMVTAITIMALYSIVCVVGLFGNFLVMYVIVRYTKMKTATNIYIFNLALADALATSTLPFQSVNYLMGTWPFGNILCKIVISIDYYNMFTSIFTLCTMSVDRYIAVCHPVKALDFRTPRNAKIVNVCNWILSSAIGLPVMFMATTKYRQGSIDCTLTFSHPTWYWENLLKICVFIFAFIMPVLIITVCYGLMILRLKSVRMLSGSKEKDRNLRRITRMVLVVVAVFIVCWTPIHIYVIIKALITIPETTFQTVSWHFCIALGYTNSCLNPVLYAFLDENFKRCFREFCIPTSSTILEVLFQGPEQQNSARIRQNTREHPSTANTVDRTNHQLENLEAETAPLPSSLAEENLYFQSWSHPQFEKGGGSGGGSGGGSWSHPQFEKGAHHHHHHHH", + "count": 1, + "label_entity_id": "1", + "label_asym_id": [ + "A" + ], + "auth_asym_id": [ + "A" + ] + } + }, + { + "proteinChain": { + "sequence": "VKKLLFAIPLVVPFYAAQPAMAQVQLVESGGGLVQAGGSLRLSCAASGSISSISTMGWYRQAPGKERELVAAITSGGSTNYADSVKGRFTISRDNAKNTVYLQMNSLKPEDTAVYYCNFKYYSGSYFYKSEYDYWGKGTPVTVSSAAAHHHHHHGAAEQKLISEEDLNGAA", + "count": 1, + "label_entity_id": "2", + "label_asym_id": [ + "B" + ], + "auth_asym_id": [ + "B" + ] + } + } + ], + "covalent_bonds": [ + { + "entity1": 1, + "position1": 166, + "atom1": "SG", + "entity2": 1, + "position2": 243, + "atom2": "SG" + }, + { + "entity1": 2, + "position1": 44, + "atom1": "SG", + "entity2": 2, + "position2": 117, + "atom2": "SG" + } + ], + "name": "8qot_B__A" + } +] \ No newline at end of file diff --git a/protenix_json/8qz6_B__A.json b/protenix_json/8qz6_B__A.json new file mode 100644 index 0000000000000000000000000000000000000000..7d30e615472959ccf25a7764f87a7708b0b45553 --- /dev/null +++ b/protenix_json/8qz6_B__A.json @@ -0,0 +1,43 @@ +[ + { + "sequences": [ + { + "proteinChain": { + "sequence": "MAGILAWFWNERFWLPHNVTWADLKNTEEATFPQAEDLYLAFPLAFCIFMVRLIFERFVAKPCAIALNIQANGPQIAPPNAILEKVFTAITKHPDEKRLEGLSKQLDWDVRSIQRWFRQRRNQEKPSTLTRFCESMWRFSFYLYVFTYGVRFLKKTPWLWNTRHCWYNYPYQPLTTDLHYYYILELSFYWSLMFSQFTDIKRKDFGIMFLHHLVSIFLITFSYVNNMARVGTLVLCLHDSADALLEAAKMANYAKFQKMCDLLFVMFAVVFITTRLGIFPLWVLNTTLFESWEIVGPYPSWWVFNLLLLLVQGLNCFWSYLIVKIACKAVSRGKAGKWNPLHVSKDDRSDAENLYFQ", + "count": 1, + "label_entity_id": "1", + "label_asym_id": [ + "A" + ], + "auth_asym_id": [ + "A" + ] + } + }, + { + "proteinChain": { + "sequence": "QVQLVESGGGLVQAEGSLRLSCAASGRTFRTYGMGWFRQAPGKEREFVAALNWSGSSTYYADSVKGRFTISRDNAKNTAYLQMNSLKPEDTAVYYCAALRRKAEYGSRSIADFDSWSKGTPVTVSSHHHHHHEPEA", + "count": 1, + "label_entity_id": "2", + "label_asym_id": [ + "B" + ], + "auth_asym_id": [ + "B" + ] + } + } + ], + "covalent_bonds": [ + { + "entity1": 2, + "position1": 22, + "atom1": "SG", + "entity2": 2, + "position2": 96, + "atom2": "SG" + } + ], + "name": "8qz6_B__A" + } +] \ No newline at end of file diff --git a/protenix_json/8qz7_B__A.json b/protenix_json/8qz7_B__A.json new file mode 100644 index 0000000000000000000000000000000000000000..71e07adb433d3e17b3b031958c46e0d9a3262d5b --- /dev/null +++ b/protenix_json/8qz7_B__A.json @@ -0,0 +1,43 @@ +[ + { + "sequences": [ + { + "proteinChain": { + "sequence": "MAGILAWFWNERFWLPHNVTWADLKNTEEATFPQAEDLYLAFPLAFCIFMVRLIFERFVAKPCAIALNIQANGPQIAPPNAILEKVFTAITKHPDEKRLEGLSKQLDWDVRSIQRWFRQRRNQEKPSTLTRFCESMWRFSFYLYVFTYGVRFLKKTPWLWNTRHCWYNYPYQPLTTDLHYYYILELSFYWSLMFSQFTDIKRKDFGIMFLHHLVSIFLITFSYVNNMARVGTLVLCLHDSADALLEAAKMANYAKFQKMCDLLFVMFAVVFITTRLGIFPLWVLNTTLFESWEIVGPYPSWWVFNLLLLLVQGLNCFWSYLIVKIACKAVSRGKAGKWNPLHVSKDDRSDAENLYFQ", + "count": 1, + "label_entity_id": "1", + "label_asym_id": [ + "A" + ], + "auth_asym_id": [ + "A" + ] + } + }, + { + "proteinChain": { + "sequence": "QVQLVESGGGLVQAEGSLRLSCAASGRTFRTYGMGWFRQAPGKEREFVAALNWSGSSTYYADSVKGRFTISRDNAKNTAYLQMNSLKPEDTAVYYCAALRRKAEYGSRSIADFDSWSKGTPVTVSSHHHHHHEPEA", + "count": 1, + "label_entity_id": "2", + "label_asym_id": [ + "B" + ], + "auth_asym_id": [ + "B" + ] + } + } + ], + "covalent_bonds": [ + { + "entity1": 2, + "position1": 22, + "atom1": "SG", + "entity2": 2, + "position2": 96, + "atom2": "SG" + } + ], + "name": "8qz7_B__A" + } +] \ No newline at end of file diff --git a/protenix_json/8r4b_B__A.json b/protenix_json/8r4b_B__A.json new file mode 100644 index 0000000000000000000000000000000000000000..ee578c138ee31979a171dd288d8b0b468c88f885 --- /dev/null +++ b/protenix_json/8r4b_B__A.json @@ -0,0 +1,43 @@ +[ + { + "sequences": [ + { + "proteinChain": { + "sequence": "GAMGSMSDLDVIRQIEQELGMQLEPVDKLKWYSKGYKLDKDQRVTAIGLYDCGSDTLDRIIQPLESLKSLSELSLSSNQITDISPLASLNSLSMLWLDRNQITDIAPLASLNSLSMLWLFGNKISDIAPLESLKSLTELQLSSNQITDIAPLASLKSLTELSLSGNNISDIAPLESLKSLTELSLSSNQITDIAPLASLKSLTELSLSSNQISDIAPLESLKSLTELQLSRNQISDIAPLESLKSLTELQLSSNQITDIAPLASLKSLTELQLSRNQISDIAPLESLNSLSKLWLNGNQITDIAPLASLNSLTELELSSNQITDIAPLASLKSLSTLWLSSNQISDIAPLASLESLSELSLSSNQISDISPLASLNSLTGFDVRRNPIKRLPETITGFDMEILWNDFSSSGFITFFDNPLESPPPEIVKQGKEAVRQYFQSIEEARSKGEALVHLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQFFMTRSSVYMLLLDSRTDSNKHYWLRHIEKYGGKSPVIVVMNKIDENPSYNIEQKKINERFPAIENRFHRISCKNGDGVESIAKSLKSAVLHPDSIYGTPLAPSWIKVKEKLVEATTAQRYLNRTEVEKICNDSGITDPGERKTLLGYLNNLGIVLYFEALDLSEIYVLDPHWVTIGVYRIINSSKTKNGHLNTSALGYILNEEQIRCDEYDPAKNNKFTYTLLEQRYLLDIMKQFELCYDEGKGLFIIPSNLPTQIDNEPEITEGEPLRFIMKYDYLPSTIIPRLMIAMQHQILDRMQWRYGMVLKSQDHEGALAKVVAETKDSTITIAIQGEPRCKREYLSIIWYEIKKINANFTNLDVKEFIPLPGHPDELVEYKELLGLEKMGRDEYVSGKLEKVFSVSKMLDSVISKEERNKERLMGDINIKLENIGNPTIPIHQQVEVNVSQETVQHVENLQGFFENLKADILREAELEIDDPKERKRLANELELAENAITKMDAAVKSGKNKLKPDVKDRLGEFIDNLANENSRLRKGIALVMNGAEKVQKLARYYNNVAPFFDLPSVPPVLLGKEKT", + "count": 1, + "label_entity_id": "1", + "label_asym_id": [ + "A" + ], + "auth_asym_id": [ + "A" + ] + } + }, + { + "proteinChain": { + "sequence": "QVQLQESGGGLVQAGGSLRLSCANSGLTFSTYTMGWFRQAPGKEREFVAAIRWSGTSTYYQDHADSVKGRFTISRDNAKNTVYLQMNSLKPEDTAVYYCAASRLRAGVKAPSEYDYWGQGTQVTVSSHHHHHHEPEA", + "count": 1, + "label_entity_id": "2", + "label_asym_id": [ + "B" + ], + "auth_asym_id": [ + "B" + ] + } + } + ], + "covalent_bonds": [ + { + "entity1": 2, + "position1": 22, + "atom1": "SG", + "entity2": 2, + "position2": 99, + "atom2": "SG" + } + ], + "name": "8r4b_B__A" + } +] \ No newline at end of file diff --git a/protenix_json/8r4d_B__A.json b/protenix_json/8r4d_B__A.json new file mode 100644 index 0000000000000000000000000000000000000000..e5974cf0cfac5e75e5704479017a6850af7e82a6 --- /dev/null +++ b/protenix_json/8r4d_B__A.json @@ -0,0 +1,43 @@ +[ + { + "sequences": [ + { + "proteinChain": { + "sequence": "GAMGSMSDLDVIRQIEQELGMQLEPVDKLKWYSKGYKLDKDQRVTAIGLYDCGSDTLDRIIQPLESLKSLSELSLSSNQITDISPLASLNSLSMLWLDRNQITDIAPLASLNSLSMLWLFGNKISDIAPLESLKSLTELQLSSNQITDIAPLASLKSLTELSLSGNNISDIAPLESLKSLTELSLSSNQITDIAPLASLKSLTELSLSSNQISDIAPLESLKSLTELQLSRNQISDIAPLESLKSLTELQLSSNQITDIAPLASLKSLTELQLSRNQISDIAPLESLNSLSKLWLNGNQITDIAPLASLNSLTELELSSNQITDIAPLASLKSLSTLWLSSNQISDIAPLASLESLSELSLSSNQISDISPLASLNSLTGFDVRRNPIKRLPETITGFDMEILWNDFSSSGFITFFDNPLESPPPEIVKQGKEAVRQYFQSIEEARSKGEALVHLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQFFMTRSSVYMLLLDSRTDSNKHYWLRHIEKYGGKSPVIVVMNKIDENPSYNIEQKKINERFPAIENRFHRISCKNGDGVESIAKSLKSAVLHPDSIYGTPLAPSWIKVKEKLVEATTAQRYLNRTEVEKICNDSGITDPGERKTLLGYLNNLGIVLYFEALDLSEIYVLDPHWVTIGVYRIINSSKTKNGHLNTSALGYILNEEQIRCDEYDPAKNNKFTYTLLEQRYLLDIMKQFELCYDEGKGLFIIPSNLPTQIDNEPEITEGEPLRFIMKYDYLPSTIIPRLMIAMQHQILDRMQWRYGMVLKSQDHEGALAKVVAETKDSTITIAIQGEPRCKREYLSIIWYEIKKINANFTNLDVKEFIPLPGHPDELVEYKELLGLEKMGRDEYVSGKLEKVFSVSKMLDSVISKEERNKERLMGDINIKLENIGNPTIPIHQQVEVNVSQETVQHVENLQGFFENLKADILREAELEIDDPKERKRLANELELAENAITKMDAAVKSGKNKLKPDVKDRLGEFIDNLANENSRLRKGIALVMNGAEKVQKLARYYNNVAPFFDLPSVPPVLLGKEKT", + "count": 1, + "label_entity_id": "1", + "label_asym_id": [ + "A" + ], + "auth_asym_id": [ + "A" + ] + } + }, + { + "proteinChain": { + "sequence": "QVQLQESGGGLVQAGGSLRLSCANSGLTFSTYTMGWFRQAPGKEREFVAAIRWSGTSTYYQDHADSVKGRFTISRDNAKNTVYLQMNSLKPEDTAVYYCAASRLRAGVKAPSEYDYWGQGTQVTVSSHHHHHHEPEA", + "count": 1, + "label_entity_id": "2", + "label_asym_id": [ + "B" + ], + "auth_asym_id": [ + "B" + ] + } + } + ], + "covalent_bonds": [ + { + "entity1": 2, + "position1": 22, + "atom1": "SG", + "entity2": 2, + "position2": 99, + "atom2": "SG" + } + ], + "name": "8r4d_B__A" + } +] \ No newline at end of file diff --git a/protenix_json/8r8k_H_L_A.json b/protenix_json/8r8k_H_L_A.json new file mode 100644 index 0000000000000000000000000000000000000000..1bf24d20331dc7e4350c54cee70495ab113aa719 --- /dev/null +++ b/protenix_json/8r8k_H_L_A.json @@ -0,0 +1,104 @@ +[ + { + "sequences": [ + { + "proteinChain": { + "sequence": "MFVFLVLLPLVSSQCVNLITRTQSYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIHVSGTNGTKRFDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSKTQSLLIVNNATNVVIKVCEFQFCNDPFLDVYYHKNNKSWMESEFRVYSSANNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLGRDLPQGFSALEPLVDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTESIVRFPNITNLCPFDEVFNATRFASVYAWNRKRISNCVADYSVLYNFAPFFAFKCYGVSPTKLNDLCFTNVYADSFVIRGNEVSQIAPGQTGNIADYNYKLPDDFTGCVIAWNSNKLDSKVGGNYNYQYRLFRKSNLKPFERDISTEIYQAGNKPCNGVAGFNCYFPLRSYGFRPTYGVGHQPYRVVVLSFELLHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQGVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIGAEYVNNSYECDIPIGAGICASYQTQTKSHRRARSVASQSIIAYTMSLGAENLVAYSNNSIAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLKRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKYFGGFNFSQILPDPSKPSKRSFIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNHNAQALNTLVKQLSSKFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQIITTDNTFVSGNCDVVIGIVNNTVYDPLQPELDSFKEELDKYFKNHTSPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQGSGYIPEAPRDGQAYVRKDGEWVLLSTFLGRSLEVLFQGPGHHHHHHHHGSAWSHPQFEKGGGSGGGSGGSAWSHPQFEK", + "count": 1, + "label_entity_id": "1", + "label_asym_id": [ + "A" + ], + "auth_asym_id": [ + "A" + ] + } + }, + { + "proteinChain": { + "sequence": "EVQLVQSGGGLVKPGGSLRLSCAASGFSFTNAWMNWVRQAPGKGLEWVGRIKSKADGGTTDYAAPVKGKFTISRDDSKNTLYLQMNSLKTEDTAIYYCTSDVYDFSTGFGQRDDFDYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCDK", + "count": 1, + "label_entity_id": "2", + "label_asym_id": [ + "B" + ], + "auth_asym_id": [ + "H" + ] + } + }, + { + "proteinChain": { + "sequence": "DIVMTQSPSSLSASVGDRVTITCRASQSISYFLNWYQQKPGKAPKLLISAASSLQSGVPSRFSGSGSGTDFTLTISSLQPEDFATYYCQQSYSSLITFGGGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC", + "count": 1, + "label_entity_id": "3", + "label_asym_id": [ + "C" + ], + "auth_asym_id": [ + "L" + ] + } + } + ], + "covalent_bonds": [ + { + "entity1": 1, + "position1": 333, + "atom1": "SG", + "entity2": 1, + "position2": 358, + "atom2": "SG" + }, + { + "entity1": 1, + "position1": 376, + "atom1": "SG", + "entity2": 1, + "position2": 429, + "atom2": "SG" + }, + { + "entity1": 1, + "position1": 388, + "atom1": "SG", + "entity2": 1, + "position2": 522, + "atom2": "SG" + }, + { + "entity1": 1, + "position1": 477, + "atom1": "SG", + "entity2": 1, + "position2": 485, + "atom2": "SG" + }, + { + "entity1": 1, + "position1": 535, + "atom1": "SG", + "entity2": 1, + "position2": 587, + "atom2": "SG" + }, + { + "entity1": 2, + "position1": 22, + "atom1": "SG", + "entity2": 2, + "position2": 98, + "atom2": "SG" + }, + { + "entity1": 3, + "position1": 23, + "atom1": "SG", + "entity2": 3, + "position2": 88, + "atom2": "SG" + } + ], + "name": "8r8k_H_L_A" + } +] \ No newline at end of file diff --git a/protenix_json/8r9y_H_L_A.json b/protenix_json/8r9y_H_L_A.json new file mode 100644 index 0000000000000000000000000000000000000000..706df9e95331d7b2b5471a8e677ab7458d03df11 --- /dev/null +++ b/protenix_json/8r9y_H_L_A.json @@ -0,0 +1,104 @@ +[ + { + "sequences": [ + { + "proteinChain": { + "sequence": "MPMGSLQPLATLYLLGMLVASVLATLPKLPELEVVQLNISAHMDFGEARLDSVTINGNTSYCVTKPYFRLETNFMCTGCTMNLRTDTCSFDLSAVNNGMSFSQFCLSTESGACEMKIIVTYVWNYLLRQRLYVTAVEGQTHTGTTSVHATDTDPDYKDDDDKAGPGWSHPQFEKGGGSGGGSGGGSWSHPQFEKGGGSGGGSGGGSWSHPQFEK", + "count": 1, + "label_entity_id": "1", + "label_asym_id": [ + "A" + ], + "auth_asym_id": [ + "A" + ] + } + }, + { + "proteinChain": { + "sequence": "QVQLVESGGGVVQPGRSLRLSCAASGFTFSSYDMHWVRQAPGKGLEWVAVIWRDGSNEYYADSVKGRFIISRDNSKNTLYLQMNSLRAEDTAVYYCARRGIIMVRGLLGYWGQGTLVTVSSASTKGPSVFPLAPSSKSGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPK", + "count": 1, + "label_entity_id": "4", + "label_asym_id": [ + "D" + ], + "auth_asym_id": [ + "H" + ] + } + }, + { + "proteinChain": { + "sequence": "DIQMTQSPPSLSASVGDRVTITCRASQGISNYLAWHQQKPGKVPKLLIYTASTLQSGVPSRFSGSGSGTDFTLTISSLQPEDVATYYCQKYNSAPFTFGPGTKVDIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRG", + "count": 1, + "label_entity_id": "5", + "label_asym_id": [ + "E" + ], + "auth_asym_id": [ + "L" + ] + } + } + ], + "covalent_bonds": [ + { + "entity1": 1, + "position1": 62, + "atom1": "SG", + "entity2": 1, + "position2": 105, + "atom2": "SG" + }, + { + "entity1": 1, + "position1": 76, + "atom1": "SG", + "entity2": 1, + "position2": 79, + "atom2": "SG" + }, + { + "entity1": 1, + "position1": 88, + "atom1": "SG", + "entity2": 1, + "position2": 113, + "atom2": "SG" + }, + { + "entity1": 2, + "position1": 22, + "atom1": "SG", + "entity2": 2, + "position2": 96, + "atom2": "SG" + }, + { + "entity1": 2, + "position1": 145, + "atom1": "SG", + "entity2": 2, + "position2": 201, + "atom2": "SG" + }, + { + "entity1": 3, + "position1": 23, + "atom1": "SG", + "entity2": 3, + "position2": 88, + "atom2": "SG" + }, + { + "entity1": 3, + "position1": 134, + "atom1": "SG", + "entity2": 3, + "position2": 194, + "atom2": "SG" + } + ], + "name": "8r9y_H_L_A" + } +] \ No newline at end of file diff --git a/protenix_json/8r9z_B_C_A.json b/protenix_json/8r9z_B_C_A.json new file mode 100644 index 0000000000000000000000000000000000000000..81d637ad687e607c7234fb0c0f6d666472dcf0ab --- /dev/null +++ b/protenix_json/8r9z_B_C_A.json @@ -0,0 +1,104 @@ +[ + { + "sequences": [ + { + "proteinChain": { + "sequence": "LEVVQLNISAHMDFGEARLDSVTINGNTSYCVTKPYFRLETNFMCTGCTMNLRTDTCSFDLSAVNNGMSFSQFCLSTESGACEMKIIVTYVWNYLLRQRLYVTAVEGQTHTGTT", + "count": 1, + "label_entity_id": "1", + "label_asym_id": [ + "A" + ], + "auth_asym_id": [ + "A" + ] + } + }, + { + "proteinChain": { + "sequence": "VQLVQSGAEVKKPGSSVKVSCKASGGTFSSLAISWVRQAPGQGLEWMGGIIPTFGTTNYAQNFRGRVTITADKSTSTAYMELSTLISEDTAVYFCARERSTDTWPGDAFDIWGQGTMVTVSSASTKGPSVFPLAPSSGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLLGQTYICNVNHKPSNTKVDKKVEPK", + "count": 1, + "label_entity_id": "2", + "label_asym_id": [ + "B" + ], + "auth_asym_id": [ + "B" + ] + } + }, + { + "proteinChain": { + "sequence": "EILMTQSPATLSVSPGERATLSCWASQSVNSKLAWYQQKPGQAPRLLIYDTSTRATGIPARFSGSGSGAEFTLTISSLQSEDFAVYYCQQYNYWPYTFGQGTKLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSF", + "count": 1, + "label_entity_id": "3", + "label_asym_id": [ + "C" + ], + "auth_asym_id": [ + "C" + ] + } + } + ], + "covalent_bonds": [ + { + "entity1": 1, + "position1": 31, + "atom1": "SG", + "entity2": 1, + "position2": 74, + "atom2": "SG" + }, + { + "entity1": 1, + "position1": 45, + "atom1": "SG", + "entity2": 1, + "position2": 48, + "atom2": "SG" + }, + { + "entity1": 1, + "position1": 57, + "atom1": "SG", + "entity2": 1, + "position2": 82, + "atom2": "SG" + }, + { + "entity1": 2, + "position1": 21, + "atom1": "SG", + "entity2": 2, + "position2": 95, + "atom2": "SG" + }, + { + "entity1": 2, + "position1": 144, + "atom1": "SG", + "entity2": 2, + "position2": 200, + "atom2": "SG" + }, + { + "entity1": 3, + "position1": 23, + "atom1": "SG", + "entity2": 3, + "position2": 88, + "atom2": "SG" + }, + { + "entity1": 3, + "position1": 134, + "atom1": "SG", + "entity2": 3, + "position2": 194, + "atom2": "SG" + } + ], + "name": "8r9z_B_C_A" + } +] \ No newline at end of file diff --git a/protenix_json/8rh2_H_L_B.json b/protenix_json/8rh2_H_L_B.json new file mode 100644 index 0000000000000000000000000000000000000000..5d393226ab58fb4637066ac3ff221c27c1e89b6a --- /dev/null +++ b/protenix_json/8rh2_H_L_B.json @@ -0,0 +1,104 @@ +[ + { + "sequences": [ + { + "proteinChain": { + "sequence": "AAPAAPRASGGVAATVAANGGPASRPPPVPSPATTRARKRKTKKPPERPEATPPPDANATVAAGHATLRAHLREIKVENADAQFYVCPPPTGATVVQFEQPRRCPTRPEGQNYTEGIAVVFKENIAPYKFKATMYYKDVTVSQVWFGHRYSQFMGIFEDRAPVPFEEVIDKINAKGVCRSTAKYVRNNMETTAFHRDDHETDMELKPAKVATRTSRGWHTTDLKYNPSRVEAFHRYGTTVNCIVEEVDARSVYPYDEFVLATGDFVYMSPFYGYREGSHTEHTSYAADRFKQVDGFYARDLTTKARATSPTTRNLLTTPKFTVAWDWVPKRPAVCTMTKWQEVDEMLRAEYGGSFRFSSDAISTTFTTNLTQYSLSRVDLGDCIGRDAREAIDRMFARKYNATHIKVGQPQYYLATGGFLIAYQPLLSNTLAELYVREYMREQDRKPRNATPAPLREAPSANASVERIKTTSSIEFARLQFTYNHIQRHVNDMLGRIAVAWCELQNHELTLWNEARKLNPNAIASATVGRRASARMLGDVMAVSTCVPVAPDNVIVQNSMRVSSRPGTCYSRPLVSFRYEDQGPLIEGQLGENNELRLTRDALEPCTVGHRRYFIFGGGYVYFEEYAYSHQLSRADVTTVSTFIDLNITMLEDHEFVPLEVYTRHEIKDSGLLDYTEVQRRNQLHDLRFADIDTVIRADANAA", + "count": 1, + "label_entity_id": "1", + "label_asym_id": [ + "B" + ], + "auth_asym_id": [ + "B" + ] + } + }, + { + "proteinChain": { + "sequence": "EVQLVQSGAEVKTPGASVRVSCKASGHTFRTFDINWVRQAAGQGLEWMGWMSPNSGNTGYARQFQGRVTMTRNISANTAYMELRGLRFDDTAVYYCARGPGSTGTTGSMDVWGQGTTVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCDKTHTCPPCPAPELLGGPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPAPIEKTISKAKGQPREPQVYTLPPSRDELTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEALHNHYTQKSLSLSPGK", + "count": 1, + "label_entity_id": "2", + "label_asym_id": [ + "D" + ], + "auth_asym_id": [ + "H" + ] + } + }, + { + "proteinChain": { + "sequence": "QAGLTQPPSVSVAPGKTARISCGGNNIGSKSVHWYQQKPGQAPVLVIYYDSDRPSGIPERFSGSNSGNTATLTISRVEAGDEADYYCQVWDSGSVVFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECS", + "count": 1, + "label_entity_id": "3", + "label_asym_id": [ + "E" + ], + "auth_asym_id": [ + "L" + ] + } + } + ], + "covalent_bonds": [ + { + "entity1": 1, + "position1": 87, + "atom1": "SG", + "entity2": 1, + "position2": 546, + "atom2": "SG" + }, + { + "entity1": 1, + "position1": 104, + "atom1": "SG", + "entity2": 1, + "position2": 502, + "atom2": "SG" + }, + { + "entity1": 1, + "position1": 178, + "atom1": "SG", + "entity2": 1, + "position2": 242, + "atom2": "SG" + }, + { + "entity1": 1, + "position1": 335, + "atom1": "SG", + "entity2": 1, + "position2": 383, + "atom2": "SG" + }, + { + "entity1": 1, + "position1": 569, + "atom1": "SG", + "entity2": 1, + "position2": 606, + "atom2": "SG" + }, + { + "entity1": 2, + "position1": 22, + "atom1": "SG", + "entity2": 2, + "position2": 96, + "atom2": "SG" + }, + { + "entity1": 3, + "position1": 22, + "atom1": "SG", + "entity2": 3, + "position2": 87, + "atom2": "SG" + } + ], + "name": "8rh2_H_L_B" + } +] \ No newline at end of file diff --git a/protenix_json/8s0l_B__A.json b/protenix_json/8s0l_B__A.json new file mode 100644 index 0000000000000000000000000000000000000000..18ba22249460c4e8943d180db69c2970bdb6c900 --- /dev/null +++ b/protenix_json/8s0l_B__A.json @@ -0,0 +1,99 @@ +[ + { + "sequences": [ + { + "proteinChain": { + "sequence": "KFMGSKCSNSGIECDSSGTCINPSNWCDGVSHCPGGEDENRCVRLYGPNFILQVYSSQRKSWHPVCQDDWNENYGRAACRDMGYKNNFYSSQGIVDDSGSTSFMKLNTSAGNVDIYKKLYHSDACSSKAVVSLRCIACGVNLNSSRQSRIVGGESALPGAWPWQVSLHVQNVHVCGGSIITPEWIVTAAHCVEKPLNNPWHWTAFAGILRQSFMFYGAGYQVEKVISHPNYDSKTKNNDIALMKLQKPLTFNDLVKPVCLPNPGMMLQPEQLCWISGWGATEEKGKTSEVLNAAKVLLIETQRCNSRYVYDNLITPAMICAGFLQGNVDSCQGDAGGPLVTSKNNIWWLIGDTSWGSGCAKAYRPGVYGNVMVFTDWIYRQMRADGGPFEDDDDK", + "count": 1, + "label_entity_id": "1", + "label_asym_id": [ + "A" + ], + "auth_asym_id": [ + "A" + ] + } + }, + { + "proteinChain": { + "sequence": "MGSSHHHHHHSSGGGQVQLVESGGGLVQPGGSLRLSCTSSGSPLEHYDIIWFRQAPGREREGVSSITTSGGHTNYADSVKDRFTISRDNAKNVVYLQMNSLKPEDTAVYYCAGRVGGRRNWIVPLDGYDNAYWGQGTQVTVSSGGGSCSA", + "count": 1, + "label_entity_id": "2", + "label_asym_id": [ + "B" + ], + "auth_asym_id": [ + "B" + ] + } + } + ], + "covalent_bonds": [ + { + "entity1": 1, + "position1": 14, + "atom1": "SG", + "entity2": 1, + "position2": 33, + "atom2": "SG" + }, + { + "entity1": 1, + "position1": 27, + "atom1": "SG", + "entity2": 1, + "position2": 42, + "atom2": "SG" + }, + { + "entity1": 1, + "position1": 66, + "atom1": "SG", + "entity2": 1, + "position2": 125, + "atom2": "SG" + }, + { + "entity1": 1, + "position1": 79, + "atom1": "SG", + "entity2": 1, + "position2": 135, + "atom2": "SG" + }, + { + "entity1": 1, + "position1": 138, + "atom1": "SG", + "entity2": 1, + "position2": 259, + "atom2": "SG" + }, + { + "entity1": 1, + "position1": 175, + "atom1": "SG", + "entity2": 1, + "position2": 191, + "atom2": "SG" + }, + { + "entity1": 1, + "position1": 304, + "atom1": "SG", + "entity2": 1, + "position2": 320, + "atom2": "SG" + }, + { + "entity1": 1, + "position1": 331, + "atom1": "SG", + "entity2": 1, + "position2": 359, + "atom2": "SG" + } + ], + "name": "8s0l_B__A" + } +] \ No newline at end of file diff --git a/protenix_json/8s0n_B__A.json b/protenix_json/8s0n_B__A.json new file mode 100644 index 0000000000000000000000000000000000000000..43ab6871519d652a1675491f6af1987afdb9b6c0 --- /dev/null +++ b/protenix_json/8s0n_B__A.json @@ -0,0 +1,83 @@ +[ + { + "sequences": [ + { + "proteinChain": { + "sequence": "RSKFMGSKCSNSGIECDSSGTCINPSNWCDGVSHCPGGEDENRCVRLYGPNFILQVYSSQRKSWHPVCQDDWNENYGRAACRDMGYKNNFYSSQGIVDDSGSTSFMKLNTSAGNVDIYKKLYHSDACSSKAVVSLRCIACGVNLNSSRQSRIVGGESALPGAWPWQVSLHVQNVHVCGGSIITPEWIVTAAHCVEKPLNNPWHWTAFAGILRQSFMFYGAGYQVEKVISHPNYDSKTKNNDIALMKLQKPLTFNDLVKPVCLPNPGMMLQPEQLCWISGWGATEEKGKTSEVLNAAKVLLIETQRCNSRYVYDNLITPAMICAGFLQGNVDSCQGDAGGPLVTSKNNIWWLIGDTSWGSGCAKAYRPGVYGNVMVFTDWIYRQMRADGGPFEDDDDK", + "count": 1, + "label_entity_id": "1", + "label_asym_id": [ + "A" + ], + "auth_asym_id": [ + "A" + ] + } + }, + { + "proteinChain": { + "sequence": "MGSSHHHHHHSSGGGQVQLVESGGGLVQPGGSLRLSCTSSGSPLEHYDIIWFRQAPGREREGVSSITTSGGHTNYADSVKDRFTISRDNAKNVVYLQMNSLKPEDTAVYYCAGRVGGRRNWIVPLDGYDNAYWGQGTQVTVSSGGGSCSA", + "count": 1, + "label_entity_id": "2", + "label_asym_id": [ + "B" + ], + "auth_asym_id": [ + "B" + ] + } + } + ], + "covalent_bonds": [ + { + "entity1": 1, + "position1": 68, + "atom1": "SG", + "entity2": 1, + "position2": 127, + "atom2": "SG" + }, + { + "entity1": 1, + "position1": 81, + "atom1": "SG", + "entity2": 1, + "position2": 137, + "atom2": "SG" + }, + { + "entity1": 1, + "position1": 140, + "atom1": "SG", + "entity2": 1, + "position2": 261, + "atom2": "SG" + }, + { + "entity1": 1, + "position1": 177, + "atom1": "SG", + "entity2": 1, + "position2": 193, + "atom2": "SG" + }, + { + "entity1": 1, + "position1": 306, + "atom1": "SG", + "entity2": 1, + "position2": 322, + "atom2": "SG" + }, + { + "entity1": 1, + "position1": 333, + "atom1": "SG", + "entity2": 1, + "position2": 361, + "atom2": "SG" + } + ], + "name": "8s0n_B__A" + } +] \ No newline at end of file diff --git a/protenix_json/8sdg_G_I_C.json b/protenix_json/8sdg_G_I_C.json new file mode 100644 index 0000000000000000000000000000000000000000..80e69f06cbf5e1279506561b0e6a8a0e1bb9fe7a --- /dev/null +++ b/protenix_json/8sdg_G_I_C.json @@ -0,0 +1,112 @@ +[ + { + "sequences": [ + { + "proteinChain": { + "sequence": "EVQLVESGGGLVQPGGSLKLSCSASGFTLSDSAMHWVRQASGKGLEWVGRISSNVNNDATVYAASLKGRFTISRDESKNMAYLQMNSLKNEDTAVYYCTVVPVLEYYQYGMDVWGQGTTVTIFNQIKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSC", + "count": 1, + "label_entity_id": "1", + "label_asym_id": [ + "A" + ], + "auth_asym_id": [ + "G" + ] + } + }, + { + "proteinChain": { + "sequence": "DIQLTQSPSTLSASVGDRVIITCRASQSISTWLAWYQQRPGQAPKLLIYKASILQSGVPPRFSGSGSGTDFTLTISRLQPDDFATYYCQQYDSDSQPLTFGGGTKLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTQGTTSVTKSFNRGECS", + "count": 1, + "label_entity_id": "2", + "label_asym_id": [ + "B" + ], + "auth_asym_id": [ + "I" + ] + } + }, + { + "proteinChain": { + "sequence": "TNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCGPKKSGHHHHHH", + "count": 1, + "label_entity_id": "3", + "label_asym_id": [ + "C" + ], + "auth_asym_id": [ + "C" + ] + } + } + ], + "covalent_bonds": [ + { + "entity1": 1, + "position1": 22, + "atom1": "SG", + "entity2": 1, + "position2": 98, + "atom2": "SG" + }, + { + "entity1": 1, + "position1": 150, + "atom1": "SG", + "entity2": 1, + "position2": 206, + "atom2": "SG" + }, + { + "entity1": 2, + "position1": 23, + "atom1": "SG", + "entity2": 2, + "position2": 88, + "atom2": "SG" + }, + { + "entity1": 2, + "position1": 136, + "atom1": "SG", + "entity2": 2, + "position2": 196, + "atom2": "SG" + }, + { + "entity1": 3, + "position1": 4, + "atom1": "SG", + "entity2": 3, + "position2": 29, + "atom2": "SG" + }, + { + "entity1": 3, + "position1": 47, + "atom1": "SG", + "entity2": 3, + "position2": 100, + "atom2": "SG" + }, + { + "entity1": 3, + "position1": 59, + "atom1": "SG", + "entity2": 3, + "position2": 193, + "atom2": "SG" + }, + { + "entity1": 3, + "position1": 148, + "atom1": "SG", + "entity2": 3, + "position2": 156, + "atom2": "SG" + } + ], + "name": "8sdg_G_I_C" + } +] \ No newline at end of file diff --git a/protenix_json/8sic_A_B_E.json b/protenix_json/8sic_A_B_E.json new file mode 100644 index 0000000000000000000000000000000000000000..b12d2928493296344e04ff00446c46f0e7fa7779 --- /dev/null +++ b/protenix_json/8sic_A_B_E.json @@ -0,0 +1,120 @@ +[ + { + "sequences": [ + { + "proteinChain": { + "sequence": "QLQLQESGPGLVKPSETLSLTCAVSGGSISGYYWSWIRQPPGKGPEWIGFIDGNTVGTNYNPSLKSRVTLSKDTSKNQFSLKVSSVTAADTAVYYCARKPLRRYFWFDVWGPGVLVTVSSASTKGPSVFPLAPSSRSTSESTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEIKT", + "count": 1, + "label_entity_id": "1", + "label_asym_id": [ + "A" + ], + "auth_asym_id": [ + "A" + ] + } + }, + { + "proteinChain": { + "sequence": "QSVLTQPPSVSGDPGQRVTISCTGSSSNIGAGYYVYWYQQFPGTAPKLLIYQDNKRPSGVSDRFSGSKSGTSASLTITGLQPGDEADYYCSAWDSSLSAVMFGRGTRLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVEVAWKADGSAVNAGVETTKPSKQSNNKYAASSYLSLTSDQWKSHKSYSCQVTHEGSTVEKTVAPAE", + "count": 1, + "label_entity_id": "2", + "label_asym_id": [ + "B" + ], + "auth_asym_id": [ + "B" + ] + } + }, + { + "proteinChain": { + "sequence": "MEAALLVCQYTIQSLIHLTGEDPGFFNVEIPEFPFYPTCNVCTADVNVTINFDVGGKKHQLDLDFGQLTPHTKAVYQPRGAFGGSENATNLFLLELLGAGELALTMRSKKLPINVTTGEEQQVSLESVDVYFQDVFGTMWCHHAEMQNPVYLIPETVPYIKWDNCNSTNITAVVRAQGLDVTLPLSLPTSAQDSNFSVKTEMLGNEIDIECIMEDGEISQVLPGDNKFNITCSGYESHVPSGGILTSTSPVATPIPGTGYAYSLRLTPRPVSRFLGNNSILYVFYSGNGPKASGGDYCIQSNIVFSDEIPASQDMPTNTTDITYVGDNATYSVPMVTSEDANSPNVTVTAFWAWPNNTETDFKCKWTLTSGTPSGCENISGAFASNRTFDITVSGLGTAPKTLIITRTATNATTTTHKVIFSKAPHHHHHH", + "count": 1, + "label_entity_id": "3", + "label_asym_id": [ + "C" + ], + "auth_asym_id": [ + "E" + ] + } + } + ], + "covalent_bonds": [ + { + "entity1": 1, + "position1": 22, + "atom1": "SG", + "entity2": 1, + "position2": 96, + "atom2": "SG" + }, + { + "entity1": 1, + "position1": 147, + "atom1": "SG", + "entity2": 1, + "position2": 203, + "atom2": "SG" + }, + { + "entity1": 2, + "position1": 22, + "atom1": "SG", + "entity2": 2, + "position2": 90, + "atom2": "SG" + }, + { + "entity1": 2, + "position1": 139, + "atom1": "SG", + "entity2": 2, + "position2": 198, + "atom2": "SG" + }, + { + "entity1": 3, + "position1": 8, + "atom1": "SG", + "entity2": 3, + "position2": 141, + "atom2": "SG" + }, + { + "entity1": 3, + "position1": 39, + "atom1": "SG", + "entity2": 3, + "position2": 42, + "atom2": "SG" + }, + { + "entity1": 3, + "position1": 165, + "atom1": "SG", + "entity2": 3, + "position2": 298, + "atom2": "SG" + }, + { + "entity1": 3, + "position1": 211, + "atom1": "SG", + "entity2": 3, + "position2": 232, + "atom2": "SG" + }, + { + "entity1": 3, + "position1": 364, + "atom1": "SG", + "entity2": 3, + "position2": 376, + "atom2": "SG" + } + ], + "name": "8sic_A_B_E" + } +] \ No newline at end of file diff --git a/protenix_json/8smn_H_L_A.json b/protenix_json/8smn_H_L_A.json new file mode 100644 index 0000000000000000000000000000000000000000..87e15a9e33471efb0583774fad3509f1d475ec36 --- /dev/null +++ b/protenix_json/8smn_H_L_A.json @@ -0,0 +1,64 @@ +[ + { + "sequences": [ + { + "proteinChain": { + "sequence": "MHHHHHHHHHHHHMKEKAAETMEIPEGIPKDLEPKHPTLWRIIYYSFGVVLLATITAAYVAEFQVLKHEAILFSLGLYGLAMLLHLMMQSLFAFLEIRRVNKSELPCSFKKTVALTIAGYQENPEYLIKCLESCKYVKYPKDKLKIILVIDGNTEDDAYMMEMFKDVFHGEDVGTYVWKGNYHTVKKPEETNKGSCPEVSKPLNEDEGINMVEELVRNKRCVCIMQQWGGKREVMYTAFQAIGTSVDYVQVCDSDTKLDELATVEMVKVLESNDMYGAVGGDVRILNPYDSFISFMSSLRYWMAFNVERACQSYFDCVSCISGPLGMYRNNILQVFLEAWYRQKFLGTYCTLGDDRHLTNRVLSMGYRTKYTHKSRAFSETPSLYLRWLNQQTRWTKSYFREWLYNAQWWHKHHIWMTYESVVSFIFPFFITATVIRLIYAGTIWNVVWLLLCIQIMSLFKSIYACWLRGNFIMLLMSLYSMLYMTGLLPSKYFALLTLNKTGWGTSGRKKIVGNYMPILPLSIWAAVLCGGVGYSIYMDCQNDWSTPEKQKEMYHLLYGCVGYVMYWVIMAVMYWVWVKRCCRKRSQTVTLVHDIPDMCV", + "count": 1, + "label_entity_id": "1", + "label_asym_id": [ + "A" + ], + "auth_asym_id": [ + "A" + ] + } + }, + { + "proteinChain": { + "sequence": "EISEVQLVESGGGLVQPGGSLRLSCAASGFNVSSYYIHWVRQAPGKGLEWVASISSSSGSTSYADSVKGRFTISADTSKNTAYLQMNSLRAEDTAVYYCARSGYYWGPYFGGFDYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCDKTHT", + "count": 1, + "label_entity_id": "2", + "label_asym_id": [ + "B" + ], + "auth_asym_id": [ + "H" + ] + } + }, + { + "proteinChain": { + "sequence": "SDIQMTQSPSSLSASVGDRVTITCRASQSVSSAVAWYQQKPGKAPKLLIYSASSLYSGVPSRFSGSRSGTDFTLTISSLQPEDFATYYCQQSSSSLITFGQGTKVEIKRTVAAPSVFIFPPSDSQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC", + "count": 1, + "label_entity_id": "3", + "label_asym_id": [ + "C" + ], + "auth_asym_id": [ + "L" + ] + } + } + ], + "covalent_bonds": [ + { + "entity1": 2, + "position1": 25, + "atom1": "SG", + "entity2": 2, + "position2": 99, + "atom2": "SG" + }, + { + "entity1": 3, + "position1": 24, + "atom1": "SG", + "entity2": 3, + "position2": 89, + "atom2": "SG" + } + ], + "name": "8smn_H_L_A" + } +] \ No newline at end of file diff --git a/protenix_json/8sne_C__A.json b/protenix_json/8sne_C__A.json new file mode 100644 index 0000000000000000000000000000000000000000..1526378f0a9417ade4b160a8cb6e2fa13c720dc8 --- /dev/null +++ b/protenix_json/8sne_C__A.json @@ -0,0 +1,43 @@ +[ + { + "sequences": [ + { + "proteinChain": { + "sequence": "MGTSWRTIVSANLFAVGGALLMLAPAIVGYVFQWNIGVSAVWGISVYGVFVLGFYIAQIVFSEFNRMRLSDWISLRPDNWNATRVAVIIAGYREDPFMFKKCLESVRDSEYGNVARLICVIDGDEEEDLKMAEIYKQVYNDNVKKPGVVLCESENKNGSTIDSDVSKNICILQPHRGKRESLYTGFQLASMDPSVHAVVLIDSDTVLEKNAILEVVYPLSCDPNIKAVAGECKIWNTDTILSMLVSWRYFSAFNVERGAQSLWKTVQCVGGPLGAYTIDIINEIKDPWITQTFLGNKCTYGDDRRLTNEVLMRGKKIVYTPFAVGWSDSPTNVMRYIVQQTRWSKSWCREIWYTLGSAWKHGFSGIYLAFECMYQIMYFFLVMYLFSYIAIKADIRAQTATVLVSTLVTIIKSSYLALRAKNLKAFYFVLYTYVYFFCMIPARITAMFTMFDIAWGTRGGNAKMTIGARVWLWAKQFLITYMWWAGVLAAGVYSIVDNWYFDWADIQYRFALVGICSYLVFVSIVLVIYLIGKITTWNYTPLQKELIEERYLHNASENAPEVLEHHHHHHHHHH", + "count": 1, + "label_entity_id": "1", + "label_asym_id": [ + "A" + ], + "auth_asym_id": [ + "A" + ] + } + }, + { + "proteinChain": { + "sequence": "QVQLVESGGGSVQPGESLRLSCQASGRIVDVNDMAWYRQAPGKQRELVARIARGGSTHYGDSAWGRFTISRDNTRNTVYLQMTSLNVEDTAVYYCNGEVKVGTRLSPFRTYWGRGTQVTVSSHHHHHHEPEA", + "count": 1, + "label_entity_id": "3", + "label_asym_id": [ + "C" + ], + "auth_asym_id": [ + "C" + ] + } + } + ], + "covalent_bonds": [ + { + "entity1": 2, + "position1": 22, + "atom1": "SG", + "entity2": 2, + "position2": 95, + "atom2": "SG" + } + ], + "name": "8sne_C__A" + } +] \ No newline at end of file diff --git a/protenix_json/8so3_Y_Z_X.json b/protenix_json/8so3_Y_Z_X.json new file mode 100644 index 0000000000000000000000000000000000000000..a853b7ed85209877a20804cc0882c838cac28d0c --- /dev/null +++ b/protenix_json/8so3_Y_Z_X.json @@ -0,0 +1,96 @@ +[ + { + "sequences": [ + { + "proteinChain": { + "sequence": "MWEAQFLGLLFLQPLWVAPVKPLQPGAEVPVVWAQEGAPAQLPCSPTIPLQDLSLLRRAGVTWQHQPDSGPPAAAPGHPLAPGPHPAAPSSWGPRPRRYTVLSVGPGGLRSGRLPLQPRVQLDERGRQRGDFSLWLRPARRADAGEYRAAVHLRDRALSCRLRLRLGQASMTASPPGSLRASDWVILNCSFSRPDRPASVHWFRNRGQGRVPVRESPHHHLAESFLFLPQVSPMDSGPWGCILTYRDGFNVSIMYNLTVLGLEPPTPLTVYAGAGSRVGLPCRLPAGVGTRSFLTAKWTPPGGGPDLLVTGDNGDFTLRLEDVSQAQAGTYTCHIHLQEQQLNATVTLAIITVTPKSFGSPGSLGKLLCEVTPVSGQERFVWSSLDTPSQRSFSGPWLEAQEAQLLSQPWQCQLYQGERLLGAAVYFTELSSPGAQRSGRAPGALPAGHLLLFLILGVLSLLLLVTGAFGFHLWRRQWRPRRFSALEQGIHPPQAQSKIEELEQEPEPEPEPEPEPEPEPEPEQL", + "count": 1, + "label_entity_id": "1", + "label_asym_id": [ + "D" + ], + "auth_asym_id": [ + "X" + ] + } + }, + { + "proteinChain": { + "sequence": "MGWTWIFLFFLSGTAGVLSEVLLLQSGPELVKPGTSVKIPCKASGYTFTDYNVDWVKQRHGKGLEWIGDINPNNGGTIYSQKFKGKATLTVDKSSSTAFMELRSLTSEDTAVYFCARNYRWFGAMDHWGQGTSVTVSSTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPKSCDKTAGWSHPQFEK", + "count": 1, + "label_entity_id": "2", + "label_asym_id": [ + "E" + ], + "auth_asym_id": [ + "Y" + ] + } + }, + { + "proteinChain": { + "sequence": "METDTILLWVLLLWVPGSTGDIVLTQSPASLAVSPGQRATISCKASQSLDYEGDSDMNWYQQKPGQPPRLLISGASNLESGIPARFSGSGSGTDFTVNIHPVEEEDAATYYCQQSTEDPRTFGGGTKLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKYQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC", + "count": 1, + "label_entity_id": "3", + "label_asym_id": [ + "F" + ], + "auth_asym_id": [ + "Z" + ] + } + } + ], + "covalent_bonds": [ + { + "entity1": 1, + "position1": 44, + "atom1": "SG", + "entity2": 1, + "position2": 160, + "atom2": "SG" + }, + { + "entity1": 1, + "position1": 189, + "atom1": "SG", + "entity2": 1, + "position2": 241, + "atom2": "SG" + }, + { + "entity1": 2, + "position1": 41, + "atom1": "SG", + "entity2": 2, + "position2": 115, + "atom2": "SG" + }, + { + "entity1": 2, + "position1": 163, + "atom1": "SG", + "entity2": 2, + "position2": 219, + "atom2": "SG" + }, + { + "entity1": 3, + "position1": 43, + "atom1": "SG", + "entity2": 3, + "position2": 112, + "atom2": "SG" + }, + { + "entity1": 3, + "position1": 158, + "atom1": "SG", + "entity2": 3, + "position2": 218, + "atom2": "SG" + } + ], + "name": "8so3_Y_Z_X" + } +] \ No newline at end of file diff --git a/protenix_json/8t04_C_D_A.json b/protenix_json/8t04_C_D_A.json new file mode 100644 index 0000000000000000000000000000000000000000..fb52fe87335aaf517796ce0ac33e1fb901789860 --- /dev/null +++ b/protenix_json/8t04_C_D_A.json @@ -0,0 +1,64 @@ +[ + { + "sequences": [ + { + "proteinChain": { + "sequence": "MGTVVAKLLLPTLSSLAFLPTVSIATKRRFYMEAMVYLFTMFFVAFSHACDGPGLSVLCFMRRDILEYFSIYGTALSMWVSLMALADFDEPQRSTFTMLGVLTIAVRTFHDRWGYGVYSGPIGTATLIIAVKWLKKMKEKKGLYPDKSIYTQQIGPGLCFGALALMLRFFFEEWDYTYVHSFYHCALAMSFVLLLPKVNKKAGNAGAPAKLTFSTLCCTCV", + "count": 1, + "label_entity_id": "1", + "label_asym_id": [ + "A" + ], + "auth_asym_id": [ + "A" + ] + } + }, + { + "proteinChain": { + "sequence": "QVTLKESGPGILQPSQTLSLTCSFSGFSLSTSGMGVSWIRKPSGKGLEWLAHIFWDDDKRYNPSLKSRLTISKDTSSNQVFLMITSIDTADTATYYCARRTWLLHAMDYWGQGTSVTVSS", + "count": 1, + "label_entity_id": "2", + "label_asym_id": [ + "C" + ], + "auth_asym_id": [ + "C" + ] + } + }, + { + "proteinChain": { + "sequence": "DIQMTQSPSSLSASLGGKVTITCKASQDINEYIAWYQHKPGKGPRLLIHYTSTLQPGIPSRFSGSGSGRDYSFSISNLEPEDIATYYCLQYDNLLWTFGGGTKLEIK", + "count": 1, + "label_entity_id": "3", + "label_asym_id": [ + "D" + ], + "auth_asym_id": [ + "D" + ] + } + } + ], + "covalent_bonds": [ + { + "entity1": 1, + "position1": 50, + "atom1": "SG", + "entity2": 1, + "position2": 59, + "atom2": "SG" + }, + { + "entity1": 2, + "position1": 22, + "atom1": "SG", + "entity2": 2, + "position2": 97, + "atom2": "SG" + } + ], + "name": "8t04_C_D_A" + } +] \ No newline at end of file diff --git a/protenix_json/8tbb_H_L_D.json b/protenix_json/8tbb_H_L_D.json new file mode 100644 index 0000000000000000000000000000000000000000..e0a9c6f259f948bc30fade8bc26c3bf373f7d3a6 --- /dev/null +++ b/protenix_json/8tbb_H_L_D.json @@ -0,0 +1,104 @@ +[ + { + "sequences": [ + { + "proteinChain": { + "sequence": "SEVEYRAEVGQNAYLPCFYTPAAPGNLVPVCWGKGACPVFECGNVVLRTDERDVNYWTSRYWLNGDFRKGDVSLTIENVTLADSGIYCCRIQIPGIMNDEKFNLKLVIKP", + "count": 1, + "label_entity_id": "1", + "label_asym_id": [ + "A" + ], + "auth_asym_id": [ + "D" + ] + } + }, + { + "proteinChain": { + "sequence": "EVQLLESGGGLVQPGGSLRLSCAASGFTFSSYHMSWVRQAPGKGLEWVSAISGSGRSYYYKDSFFGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCATSWETARILPGAFDIWGRGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPKSC", + "count": 1, + "label_entity_id": "2", + "label_asym_id": [ + "B" + ], + "auth_asym_id": [ + "H" + ] + } + }, + { + "proteinChain": { + "sequence": "DIQLTQSPSFLSASVGDRVTITCRTSQDTNSYLAWYQQKPGKAPKLLIYAASVLLSGVPSRFSGSGSGTEFTLTISSLQPEDFATYYCQQLASSPITFGQGTRLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC", + "count": 1, + "label_entity_id": "3", + "label_asym_id": [ + "C" + ], + "auth_asym_id": [ + "L" + ] + } + } + ], + "covalent_bonds": [ + { + "entity1": 1, + "position1": 17, + "atom1": "SG", + "entity2": 1, + "position2": 89, + "atom2": "SG" + }, + { + "entity1": 1, + "position1": 31, + "atom1": "SG", + "entity2": 1, + "position2": 42, + "atom2": "SG" + }, + { + "entity1": 1, + "position1": 37, + "atom1": "SG", + "entity2": 1, + "position2": 88, + "atom2": "SG" + }, + { + "entity1": 2, + "position1": 22, + "atom1": "SG", + "entity2": 2, + "position2": 96, + "atom2": "SG" + }, + { + "entity1": 2, + "position1": 150, + "atom1": "SG", + "entity2": 2, + "position2": 206, + "atom2": "SG" + }, + { + "entity1": 3, + "position1": 23, + "atom1": "SG", + "entity2": 3, + "position2": 88, + "atom2": "SG" + }, + { + "entity1": 3, + "position1": 134, + "atom1": "SG", + "entity2": 3, + "position2": 194, + "atom2": "SG" + } + ], + "name": "8tbb_H_L_D" + } +] \ No newline at end of file diff --git a/protenix_json/8tfh_H_L_B.json b/protenix_json/8tfh_H_L_B.json new file mode 100644 index 0000000000000000000000000000000000000000..b8654ceadc29d53e5556ee2899ba8171088c6976 --- /dev/null +++ b/protenix_json/8tfh_H_L_B.json @@ -0,0 +1,112 @@ +[ + { + "sequences": [ + { + "proteinChain": { + "sequence": "ADVCMDPEPIVRIVGRNGLCVDVRDGRFHNGNAIQLWPCKSNTDANQLWTLKRDNTIRSNGKCLTTYGYSPGVYVMIYDCNTAATDATRWQIWDNGTIINPRSSLVLAATSGNSGTTLTVQTNIYAVSQGWLPTNNTQPFVTTIVGLYGLCLQANSGQVWIEDCSSEKAEQQWALYADGSIRPQQNRDNCLTSDSNIRETVVKILSCGPASSGQRWMFKNDGTILNLYSGLVLDVRASDPSLKQIILYPLHGDPNQIWLPLF", + "count": 1, + "label_entity_id": "2", + "label_asym_id": [ + "B" + ], + "auth_asym_id": [ + "B" + ] + } + }, + { + "proteinChain": { + "sequence": "EVQLQQSGAELMNPGASVKISCKTSGYTFSRYWIEWIIQRPGHGLEWIGEILPGNGNTNYNEKFRGKATFTADSSSNTVYMQLSSLTSEDSAVYYCARPRDYGFDQAWFAYWGQGTLVTVSAAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSPRPSETVTCNVAHPASSTKVDKKIVPRD", + "count": 1, + "label_entity_id": "3", + "label_asym_id": [ + "C" + ], + "auth_asym_id": [ + "H" + ] + } + }, + { + "proteinChain": { + "sequence": "DIVMTQSPSSLSASLGGKVTITCKASQDIKKYIAWFQHRPGKGPRLLIHYTSTLQPGIPSRFSGNGSGRDYSFSISNLEPEDIATYYCLQYDNLYTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNR", + "count": 1, + "label_entity_id": "4", + "label_asym_id": [ + "D" + ], + "auth_asym_id": [ + "L" + ] + } + } + ], + "covalent_bonds": [ + { + "entity1": 1, + "position1": 20, + "atom1": "SG", + "entity2": 1, + "position2": 39, + "atom2": "SG" + }, + { + "entity1": 1, + "position1": 63, + "atom1": "SG", + "entity2": 1, + "position2": 80, + "atom2": "SG" + }, + { + "entity1": 1, + "position1": 151, + "atom1": "SG", + "entity2": 1, + "position2": 164, + "atom2": "SG" + }, + { + "entity1": 1, + "position1": 190, + "atom1": "SG", + "entity2": 1, + "position2": 207, + "atom2": "SG" + }, + { + "entity1": 2, + "position1": 22, + "atom1": "SG", + "entity2": 2, + "position2": 96, + "atom2": "SG" + }, + { + "entity1": 2, + "position1": 149, + "atom1": "SG", + "entity2": 2, + "position2": 204, + "atom2": "SG" + }, + { + "entity1": 3, + "position1": 23, + "atom1": "SG", + "entity2": 3, + "position2": 88, + "atom2": "SG" + }, + { + "entity1": 3, + "position1": 133, + "atom1": "SG", + "entity2": 3, + "position2": 193, + "atom2": "SG" + } + ], + "name": "8tfh_H_L_B" + } +] \ No newline at end of file diff --git a/protenix_json/8tng_H__E.json b/protenix_json/8tng_H__E.json new file mode 100644 index 0000000000000000000000000000000000000000..cc0d01ca9687cd694cf9f8a859be70fe513f55d8 --- /dev/null +++ b/protenix_json/8tng_H__E.json @@ -0,0 +1,131 @@ +[ + { + "sequences": [ + { + "proteinChain": { + "sequence": "AENLWVTVYYGVPVWKDAETTLFCASDAKAYETEKHNVWATHACVPTDPNPQEIHLENVTEEFNMWKNNMVEQMHTDIISLWDQSLKPCVKLTPLCVTLQCTNVTNNITDDMRGELKNCSFNMTTELRDKKQKVYSLFYRLDVVQINENQGNRSNNSNKEYRLINCNTSACTQACPKVSFEPIPIHYCAPAGFAILKCKDKKFNGTGPCPSVSTVQCTHGIKPVVSTQLLLNGSLAEEEVMIRSENITNNAKNILVQFNTPVQINCTRPNNNTRKSIRIGPGQAFYATGDIIGDIRQAHCNVSKATWNETLGKVVKQLRKHFGNNTIIRFANSSGGDLEVTTHSFNCGGEFFYCNTSGLFNSTWISNTSVQGSNSTGSNDSITLPCRIKQIINMWQRIGQCMYAPPIQGVIRCVSNITGLILTRDGGSTNSTTETFRPGGGDMRDNWRSELYKYKVVKIEPLGVAPTRCKRRVVGRRRRRR", + "count": 1, + "label_entity_id": "1", + "label_asym_id": [ + "E" + ], + "auth_asym_id": [ + "E" + ] + } + }, + { + "proteinChain": { + "sequence": "QVQLQESGGGLVQPGGSLRLSCVASGFDLENYSIGWFRQAPGKAREGVACLSKNSGIGHSVKGRFTISRDGDSNTWFLQMGALEAEDTAVYTCATYNRACANYVTIWPEFRGQGTQVTVSS", + "count": 1, + "label_entity_id": "3", + "label_asym_id": [ + "G" + ], + "auth_asym_id": [ + "H" + ] + } + } + ], + "covalent_bonds": [ + { + "entity1": 1, + "position1": 24, + "atom1": "SG", + "entity2": 1, + "position2": 44, + "atom2": "SG" + }, + { + "entity1": 1, + "position1": 89, + "atom1": "SG", + "entity2": 1, + "position2": 175, + "atom2": "SG" + }, + { + "entity1": 1, + "position1": 96, + "atom1": "SG", + "entity2": 1, + "position2": 166, + "atom2": "SG" + }, + { + "entity1": 1, + "position1": 101, + "atom1": "SG", + "entity2": 1, + "position2": 119, + "atom2": "SG" + }, + { + "entity1": 1, + "position1": 171, + "atom1": "SG", + "entity2": 1, + "position2": 401, + "atom2": "SG" + }, + { + "entity1": 1, + "position1": 188, + "atom1": "SG", + "entity2": 1, + "position2": 217, + "atom2": "SG" + }, + { + "entity1": 1, + "position1": 198, + "atom1": "SG", + "entity2": 1, + "position2": 209, + "atom2": "SG" + }, + { + "entity1": 1, + "position1": 266, + "atom1": "SG", + "entity2": 1, + "position2": 300, + "atom2": "SG" + }, + { + "entity1": 1, + "position1": 347, + "atom1": "SG", + "entity2": 1, + "position2": 413, + "atom2": "SG" + }, + { + "entity1": 1, + "position1": 354, + "atom1": "SG", + "entity2": 1, + "position2": 386, + "atom2": "SG" + }, + { + "entity1": 2, + "position1": 22, + "atom1": "SG", + "entity2": 2, + "position2": 93, + "atom2": "SG" + }, + { + "entity1": 2, + "position1": 50, + "atom1": "SG", + "entity2": 2, + "position2": 100, + "atom2": "SG" + } + ], + "name": "8tng_H__E" + } +] \ No newline at end of file diff --git a/protenix_json/8tnj_E_F_A.json b/protenix_json/8tnj_E_F_A.json new file mode 100644 index 0000000000000000000000000000000000000000..5cb173a86a8d804fa408c3a819396ae7e669c889 --- /dev/null +++ b/protenix_json/8tnj_E_F_A.json @@ -0,0 +1,88 @@ +[ + { + "sequences": [ + { + "proteinChain": { + "sequence": "NRFLGDYVVGGGGSGGGGSGGGGSIQRTPKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFSKDWSFYLLYYTEFTPTEKDEYACRVNHVTLSQPKIVKWDRDMGGGGSGGGGSGGGGSGGGGSGSHSMRYFHTSVSRPGRGEPRFITVGYVDDTQFVRFDSDAASPREEPRAPWIEQEGPEYWDRNTQICKAKAQTDRVGLRNLRGYYNQSEDGSHTWQTMYGCDMGPDGRLLRGYNQFAYDGKDYIALNEDLRSWTAADTAAQITQRKWEAARVAEQLRAYLEGECVEWLRRHLENGKETLQRADPPKTHVTHHPISDHEATLRCWALGFYPAEITLTWQRDGEDQTQDTELVETRPAGDGTFQKWAAVVVPSGQEQRYTCHVQHEGLQEPLTLRWKPGGSGLEVLFQGPHHHHHHHH", + "count": 1, + "label_entity_id": "1", + "label_asym_id": [ + "A" + ], + "auth_asym_id": [ + "A" + ] + } + }, + { + "proteinChain": { + "sequence": "EISEVQLVESGGGLVQPGGSLRLSCAASGFNVSYYSIHWVRQAPGKGLEWVASISPYSGSTSYADSVKGRFTISADTSKNTAYLQMNSLRAEDTAVYYCARYSYGNSWSYDPYYGAMDYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCDKTHT", + "count": 1, + "label_entity_id": "4", + "label_asym_id": [ + "D" + ], + "auth_asym_id": [ + "E" + ] + } + }, + { + "proteinChain": { + "sequence": "SDIQMTQSPSSLSASVGDRVTITCRASQSVSSAVAWYQQKPGKAPKLLIYSASSLYSGVPSRFSGSRSGTDFTLTISSLQPEDFATYYCQQYYWAPITFGQGTKVEIKRTVAAPSVFIFPPSDSQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC", + "count": 1, + "label_entity_id": "5", + "label_asym_id": [ + "E" + ], + "auth_asym_id": [ + "F" + ] + } + } + ], + "covalent_bonds": [ + { + "entity1": 1, + "position1": 49, + "atom1": "SG", + "entity2": 1, + "position2": 104, + "atom2": "SG" + }, + { + "entity1": 1, + "position1": 244, + "atom1": "SG", + "entity2": 1, + "position2": 307, + "atom2": "SG" + }, + { + "entity1": 1, + "position1": 346, + "atom1": "SG", + "entity2": 1, + "position2": 402, + "atom2": "SG" + }, + { + "entity1": 2, + "position1": 25, + "atom1": "SG", + "entity2": 2, + "position2": 99, + "atom2": "SG" + }, + { + "entity1": 3, + "position1": 24, + "atom1": "SG", + "entity2": 3, + "position2": 89, + "atom2": "SG" + } + ], + "name": "8tnj_E_F_A" + } +] \ No newline at end of file diff --git a/protenix_json/8tnn_H_G_C.json b/protenix_json/8tnn_H_G_C.json new file mode 100644 index 0000000000000000000000000000000000000000..0e14ff5573b719af02c6b34ea6bcbb720f9e1c73 --- /dev/null +++ b/protenix_json/8tnn_H_G_C.json @@ -0,0 +1,122 @@ +[ + { + "sequences": [ + { + "proteinChain": { + "sequence": "GGGRVAAAAITWVPKPNVEVWPVDPPPPVNFNKTAEQEYGDKEVKLPHWTPTLHTFQVPQNYTKANCTYCNTREYTFSYKGCCFYFTKKKHTWNGCFQACAELYPCTYFYGPTPDILPVVTRNLNAIESLWVGVYRVGEGNWTSLDGGTFKVYQIFGSHCTYVSKFSTVPVSHHECSFLKPCLCVSQRSNS", + "count": 1, + "label_entity_id": "3", + "label_asym_id": [ + "C" + ], + "auth_asym_id": [ + "C" + ] + } + }, + { + "proteinChain": { + "sequence": "NSYELTQPPSVSAASGQTARITCGGDNIGSKNVQWYQQKPAQAPVLVIYADSKRPSGVPERFSGSNSGNTATLTISGVEAGDEADYYCQVWDRSSNIFGVGTRLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECS", + "count": 1, + "label_entity_id": "4", + "label_asym_id": [ + "G" + ], + "auth_asym_id": [ + "G" + ] + } + }, + { + "proteinChain": { + "sequence": "NSQVQLQESGPGLVKPSQTLSLTCAISGDSVSSNSATWNWIRQSPSRGLEWLGRTYYRSKWYYDYAQSVQNRISINPDTSKNQFSLQLNSVTPEDMAVYYCARGDFDAFDFWGQGLRVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCDKGLEVLFQ", + "count": 1, + "label_entity_id": "5", + "label_asym_id": [ + "H" + ], + "auth_asym_id": [ + "H" + ] + } + } + ], + "covalent_bonds": [ + { + "entity1": 1, + "position1": 67, + "atom1": "SG", + "entity2": 1, + "position2": 106, + "atom2": "SG" + }, + { + "entity1": 1, + "position1": 70, + "atom1": "SG", + "entity2": 1, + "position2": 83, + "atom2": "SG" + }, + { + "entity1": 1, + "position1": 96, + "atom1": "SG", + "entity2": 1, + "position2": 182, + "atom2": "SG" + }, + { + "entity1": 1, + "position1": 100, + "atom1": "SG", + "entity2": 1, + "position2": 184, + "atom2": "SG" + }, + { + "entity1": 1, + "position1": 160, + "atom1": "SG", + "entity2": 1, + "position2": 176, + "atom2": "SG" + }, + { + "entity1": 2, + "position1": 23, + "atom1": "SG", + "entity2": 2, + "position2": 88, + "atom2": "SG" + }, + { + "entity1": 2, + "position1": 135, + "atom1": "SG", + "copy1": 1, + "entity2": 2, + "position2": 194, + "atom2": "SG", + "copy2": 1 + }, + { + "entity1": 3, + "position1": 24, + "atom1": "SG", + "entity2": 3, + "position2": 101, + "atom2": "SG" + }, + { + "entity1": 3, + "position1": 149, + "atom1": "SG", + "entity2": 3, + "position2": 205, + "atom2": "SG" + } + ], + "name": "8tnn_H_G_C" + } +] \ No newline at end of file diff --git a/protenix_json/8too_B_A_I.json b/protenix_json/8too_B_A_I.json new file mode 100644 index 0000000000000000000000000000000000000000..24f0ae0fad3e47024d50ae2d658287f00b410cae --- /dev/null +++ b/protenix_json/8too_B_A_I.json @@ -0,0 +1,120 @@ +[ + { + "sequences": [ + { + "proteinChain": { + "sequence": "DIQMTQTTSSLSASLGDRVTISCRASQDISNYLNWYQQKPDGTVKLLIYYTSRLRSGVPSRFSGSGSGTDYSLTINNLEQEDIATYFCQQGNTLPFTFGSGTKLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC", + "count": 1, + "label_entity_id": "1", + "label_asym_id": [ + "A" + ], + "auth_asym_id": [ + "A" + ] + } + }, + { + "proteinChain": { + "sequence": "EVQLQQSGPELVKPGASVKISCKASGYTFTDYNMHWVKQSHGKNLEWIGFIYLYNGGTGYNQNFKSKATLTVDNSSSTAYMELRSLTSEDSAVFYCARDYYGNPYAMDYWGQGTSVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCDKGLEVLFQGP", + "count": 1, + "label_entity_id": "2", + "label_asym_id": [ + "B" + ], + "auth_asym_id": [ + "B" + ] + } + }, + { + "proteinChain": { + "sequence": "LHTFQVPQNYTKANCTYCNTREYTFSYKGCCFYFTKKKHTWNGCFQACAELYPCTYFYGPTPDILPVVTRNLNAIESLWVGVYRVGEGNWTSLDGGTFKVYQIFGSHCTYVSKFSTVPVSHHECSFLKPCLCVSQRSNS", + "count": 1, + "label_entity_id": "3", + "label_asym_id": [ + "I" + ], + "auth_asym_id": [ + "I" + ] + } + } + ], + "covalent_bonds": [ + { + "entity1": 1, + "position1": 23, + "atom1": "SG", + "entity2": 1, + "position2": 88, + "atom2": "SG" + }, + { + "entity1": 1, + "position1": 134, + "atom1": "SG", + "entity2": 1, + "position2": 194, + "atom2": "SG" + }, + { + "entity1": 2, + "position1": 22, + "atom1": "SG", + "entity2": 2, + "position2": 96, + "atom2": "SG" + }, + { + "entity1": 2, + "position1": 147, + "atom1": "SG", + "entity2": 2, + "position2": 203, + "atom2": "SG" + }, + { + "entity1": 3, + "position1": 15, + "atom1": "SG", + "entity2": 3, + "position2": 54, + "atom2": "SG" + }, + { + "entity1": 3, + "position1": 18, + "atom1": "SG", + "entity2": 3, + "position2": 31, + "atom2": "SG" + }, + { + "entity1": 3, + "position1": 44, + "atom1": "SG", + "entity2": 3, + "position2": 130, + "atom2": "SG" + }, + { + "entity1": 3, + "position1": 48, + "atom1": "SG", + "entity2": 3, + "position2": 132, + "atom2": "SG" + }, + { + "entity1": 3, + "position1": 108, + "atom1": "SG", + "entity2": 3, + "position2": 124, + "atom2": "SG" + } + ], + "name": "8too_B_A_I" + } +] \ No newline at end of file diff --git a/protenix_json/8tp5_E_F_C.json b/protenix_json/8tp5_E_F_C.json new file mode 100644 index 0000000000000000000000000000000000000000..748f97246eef84b50191644e2eb8a50f1e7616bb --- /dev/null +++ b/protenix_json/8tp5_E_F_C.json @@ -0,0 +1,96 @@ +[ + { + "sequences": [ + { + "proteinChain": { + "sequence": "DTICIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDSHNGKLCLLKGIAPLQLGNCSVAGWILGNPECELLISKESWSYIVETPNPENGTCYPGYFADYEELREQLSSVSSFERFEIFPKESSWPNHTVTGVSASCSHNGKSSFYRNLLWLTGKNGLYPNLSKSYVNNKEKEVLVLWGVHHPPNIGNQRALYHTENAYVSVVSSHYSRRFTPEIAKRPKVRDQEGRINYYWTLLEPGDTIIFEANGNLIAPWYAFALSRGFGSGIITSNAPMDECDAKCQTPQGAINSSLPFQNVHPVTIGECPKYVRSAKLRMVTGLRNIPS", + "count": 1, + "label_entity_id": "1", + "label_asym_id": [ + "C" + ], + "auth_asym_id": [ + "C" + ] + } + }, + { + "proteinChain": { + "sequence": "QVQLVQSGAQLRKPGSSVTVSCKASGDTFNSYSIHWVRQAPGQGLEWMGRIIPVFGMTHYAQRFRGRITVSADKSTRTAYMELTSLTSADTAMYYCARDGGDKFHSSGHFETNQGYFDHWGQGALVTVSS", + "count": 1, + "label_entity_id": "3", + "label_asym_id": [ + "E" + ], + "auth_asym_id": [ + "E" + ] + } + }, + { + "proteinChain": { + "sequence": "QSVLTQPPSVSGAPGQRVTVSCTGSSSNLGATYEVHWYQQFPGTAPKLLIYGSTNRPSGVPERFSGSKSGTSASLTITGLQAEDEADYYCQSYDTSLRGFYVFGTGTKVTVL", + "count": 1, + "label_entity_id": "4", + "label_asym_id": [ + "F" + ], + "auth_asym_id": [ + "F" + ] + } + } + ], + "covalent_bonds": [ + { + "entity1": 1, + "position1": 42, + "atom1": "SG", + "entity2": 1, + "position2": 274, + "atom2": "SG" + }, + { + "entity1": 1, + "position1": 55, + "atom1": "SG", + "entity2": 1, + "position2": 67, + "atom2": "SG" + }, + { + "entity1": 1, + "position1": 90, + "atom1": "SG", + "entity2": 1, + "position2": 135, + "atom2": "SG" + }, + { + "entity1": 1, + "position1": 278, + "atom1": "SG", + "entity2": 1, + "position2": 302, + "atom2": "SG" + }, + { + "entity1": 2, + "position1": 22, + "atom1": "SG", + "entity2": 2, + "position2": 96, + "atom2": "SG" + }, + { + "entity1": 3, + "position1": 22, + "atom1": "SG", + "entity2": 3, + "position2": 90, + "atom2": "SG" + } + ], + "name": "8tp5_E_F_C" + } +] \ No newline at end of file diff --git a/protenix_json/8tr3_H_L_A.json b/protenix_json/8tr3_H_L_A.json new file mode 100644 index 0000000000000000000000000000000000000000..a53fdbc6829d19f9ba3dd1468af4a40b0c590dd8 --- /dev/null +++ b/protenix_json/8tr3_H_L_A.json @@ -0,0 +1,112 @@ +[ + { + "sequences": [ + { + "proteinChain": { + "sequence": "GNLWVTVYYGVPVWKEATTTLFCASDAKAYDTEVHNVWATHACVPADPNPQEMLLKNVTENFNMWKNEMVNQMHEDVISLWDQSLKPCVKLTPLCVTLNCTNVKINSTSNETCIDSGNNSTCNETYKEMRNCSFNATTVVRDKQQKMYALFYKLDIVPLNSGYKNSSDETYRLINCNTSAITQACPKVSFDPIPIHYCTPAGYALLKCNNKTFNGTGPCNNVSTVQCTHGIKPVVSTQLLLNGSLAEEEIIIRSENLTNNAKTIIVHLKEPVNITCERPNNNTRKSIRIGPGQTFYATGDIIGNIREAHCNISRSQWNKTLQGVGEKLAELFPNKTIVFKNSSGGDLEITTHSFNCRGEFFYCNTTDLFNSTYWSNGTYITQSNSSSINITLPCRIKQIINMWQEVGRAIYAPPIAGQITCISNITGLLLLRDGGKEANGTEIFRPGGGDMRDNWRSELYKYKVVEIKPLGVAPTKCRRRVVERRRRRR", + "count": 1, + "label_entity_id": "1", + "label_asym_id": [ + "A" + ], + "auth_asym_id": [ + "A" + ] + } + }, + { + "proteinChain": { + "sequence": "QVQLVQSGAEVKKPGASVKVSCKASGYTFTSYDITWVRQAPGQGLEWMGWISAYNGDTNYAQRLQGRVTMTTDTSTSTAYMELRSLRSDDTAVYYCARAKHTVLVTAMRWFDPWGQGTLVTVSS", + "count": 1, + "label_entity_id": "3", + "label_asym_id": [ + "C" + ], + "auth_asym_id": [ + "H" + ] + } + }, + { + "proteinChain": { + "sequence": "DIQMTQSPSSLSASVGDRVTITCRASQSISNYLNWYQQKPGKAPKLLISATSSLQSGVPSRFSGSGSGTDFTLTISSLQPDDFATYYCQQSYSTPWTFGQGTKLEIKRT", + "count": 1, + "label_entity_id": "4", + "label_asym_id": [ + "D" + ], + "auth_asym_id": [ + "L" + ] + } + } + ], + "covalent_bonds": [ + { + "entity1": 1, + "position1": 23, + "atom1": "SG", + "entity2": 1, + "position2": 43, + "atom2": "SG" + }, + { + "entity1": 1, + "position1": 198, + "atom1": "SG", + "entity2": 1, + "position2": 227, + "atom2": "SG" + }, + { + "entity1": 1, + "position1": 208, + "atom1": "SG", + "entity2": 1, + "position2": 219, + "atom2": "SG" + }, + { + "entity1": 1, + "position1": 276, + "atom1": "SG", + "entity2": 1, + "position2": 310, + "atom2": "SG" + }, + { + "entity1": 1, + "position1": 356, + "atom1": "SG", + "entity2": 1, + "position2": 421, + "atom2": "SG" + }, + { + "entity1": 1, + "position1": 363, + "atom1": "SG", + "entity2": 1, + "position2": 394, + "atom2": "SG" + }, + { + "entity1": 2, + "position1": 22, + "atom1": "SG", + "entity2": 2, + "position2": 96, + "atom2": "SG" + }, + { + "entity1": 3, + "position1": 23, + "atom1": "SG", + "entity2": 3, + "position2": 88, + "atom2": "SG" + } + ], + "name": "8tr3_H_L_A" + } +] \ No newline at end of file diff --git a/protenix_json/8ts0_H_L_A.json b/protenix_json/8ts0_H_L_A.json new file mode 100644 index 0000000000000000000000000000000000000000..83d0a4972567be823b8076c6b3dad472fe69395f --- /dev/null +++ b/protenix_json/8ts0_H_L_A.json @@ -0,0 +1,104 @@ +[ + { + "sequences": [ + { + "proteinChain": { + "sequence": "EVQLVQSGAEVKKPGSSVKVSCKASGYTFTNYGINWVRQAPGQGLEWMGEIFPRSDNTFYAQKFQGRVTITADKSTSTAYMELSSLRSEDTAVYYCARKGRDYGTSHYFDYWGQGTTVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCGSGSGHHHHHH", + "count": 1, + "label_entity_id": "1", + "label_asym_id": [ + "A" + ], + "auth_asym_id": [ + "H" + ] + } + }, + { + "proteinChain": { + "sequence": "DIQMTQSPSSLSASVGDRVTITCRISENIYSNLAWYQQKPGKAPKLLIYAAINLADGVPSRFSGSGSGTDFTLTISSLQPEDFATYYCQHFWGTPFTFGQGTKLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC", + "count": 1, + "label_entity_id": "2", + "label_asym_id": [ + "B" + ], + "auth_asym_id": [ + "L" + ] + } + }, + { + "proteinChain": { + "sequence": "HHHHHHHHGSGSGLNDIFEAQKIEWHESGSGCPVNWVEHERSCYWFSRSGKAWADADNYCRLEDAHLVVVTSWEEQKFVQHHIGPVNTWMGLHDQNGPWKWVDGTDYETGFKNWRPEQPDDWYGHGLGGGEDCAHFTDDGRWNDDVCQRPYRWVCETELDKASQEPPLL", + "count": 1, + "label_entity_id": "3", + "label_asym_id": [ + "C" + ], + "auth_asym_id": [ + "A" + ] + } + } + ], + "covalent_bonds": [ + { + "entity1": 1, + "position1": 22, + "atom1": "SG", + "entity2": 1, + "position2": 96, + "atom2": "SG" + }, + { + "entity1": 1, + "position1": 149, + "atom1": "SG", + "entity2": 1, + "position2": 205, + "atom2": "SG" + }, + { + "entity1": 2, + "position1": 23, + "atom1": "SG", + "entity2": 2, + "position2": 88, + "atom2": "SG" + }, + { + "entity1": 2, + "position1": 134, + "atom1": "SG", + "entity2": 2, + "position2": 194, + "atom2": "SG" + }, + { + "entity1": 3, + "position1": 32, + "atom1": "SG", + "entity2": 3, + "position2": 43, + "atom2": "SG" + }, + { + "entity1": 3, + "position1": 60, + "atom1": "SG", + "entity2": 3, + "position2": 155, + "atom2": "SG" + }, + { + "entity1": 3, + "position1": 133, + "atom1": "SG", + "entity2": 3, + "position2": 147, + "atom2": "SG" + } + ], + "name": "8ts0_H_L_A" + } +] \ No newline at end of file diff --git a/protenix_json/8tui_H_L_A.json b/protenix_json/8tui_H_L_A.json new file mode 100644 index 0000000000000000000000000000000000000000..46cc29f89efd729a6c7ab3d3f579a0fd8e620f84 --- /dev/null +++ b/protenix_json/8tui_H_L_A.json @@ -0,0 +1,88 @@ +[ + { + "sequences": [ + { + "proteinChain": { + "sequence": "QSQVQLVQSGAEVKKPGSSVKVSCKASGGTFSFYAISWVRQAPGQGLEWMGGFIPIFGAANYAQKFQGRVTITADESTSTAYMELSSLRSDDTAVYYCARIPSGSYYYDYDMDVWGQGTTVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCASLVPRGSGWSHPQFEKGGGSGGGSGGGSWSHPQFEK", + "count": 1, + "label_entity_id": "1", + "label_asym_id": [ + "A" + ], + "auth_asym_id": [ + "H" + ] + } + }, + { + "proteinChain": { + "sequence": "EIVLTQSPVTLSLSPGERATLSCRASQSVSSYLAWYQQKPGQAPRLLIYDASNRATGIPARFSGSGSGTDFTLTISSLEPEDFAVYYCQQRSNWMYTFGQGTKLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC", + "count": 1, + "label_entity_id": "2", + "label_asym_id": [ + "B" + ], + "auth_asym_id": [ + "L" + ] + } + }, + { + "proteinChain": { + "sequence": "HEGVHRKPSLLAHPGPLVKSEETVILQCWSDVRFQHFLLHREGKFKDTLHLIGEHHDGVSKANFSIGPMMQDLAGTYRCYGSVTHSPYQLSAPSDPLDIVITGLYEKPSLSAQPGPTVLAGESVTLSCSSRSSYDMYHLSREGEAHERRFSAGPKVNGTFQADFPLGPATHGGTYRCFGSFRDSPYEWSNSSDPLLVSVTGNPSNSWPSPTEPSSETGNPRHLHAAAEQKLISEEDLNLDLVPRGSSSHHHHHHSSG", + "count": 1, + "label_entity_id": "3", + "label_asym_id": [ + "C" + ], + "auth_asym_id": [ + "A" + ] + } + } + ], + "covalent_bonds": [ + { + "entity1": 1, + "position1": 24, + "atom1": "SG", + "entity2": 1, + "position2": 98, + "atom2": "SG" + }, + { + "entity1": 1, + "position1": 152, + "atom1": "SG", + "entity2": 1, + "position2": 208, + "atom2": "SG" + }, + { + "entity1": 2, + "position1": 23, + "atom1": "SG", + "entity2": 2, + "position2": 88, + "atom2": "SG" + }, + { + "entity1": 2, + "position1": 134, + "atom1": "SG", + "entity2": 2, + "position2": 194, + "atom2": "SG" + }, + { + "entity1": 3, + "position1": 28, + "atom1": "SG", + "entity2": 3, + "position2": 79, + "atom2": "SG" + } + ], + "name": "8tui_H_L_A" + } +] \ No newline at end of file diff --git a/protenix_json/8tv1_D_E_C.json b/protenix_json/8tv1_D_E_C.json new file mode 100644 index 0000000000000000000000000000000000000000..0116fa51a8eeaae4113fa6cb78215f322604a66f --- /dev/null +++ b/protenix_json/8tv1_D_E_C.json @@ -0,0 +1,144 @@ +[ + { + "sequences": [ + { + "proteinChain": { + "sequence": "EVQLVESGGGLVQPGGSLRLSCAASGFTISSSYIHWVRQAPGKGLEWVASISSYYGSTSYADSVKGRFTISADTSKNTAYLQMNSLRAEDTAVYYCARSHYSVWWGWHSVSYYAAFDYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCDKTHT", + "count": 1, + "label_entity_id": "1", + "label_asym_id": [ + "A" + ], + "auth_asym_id": [ + "D" + ] + } + }, + { + "proteinChain": { + "sequence": "DIQMTQSPSSLSASVGDRVTITCRASQSVSSAVAWYQQKPGKAPKLLIYSASSLYSGVPSRFSGSRSGTDFTLTISSLQPEDFATYYCQQGSAPFTFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVSWYVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTQGTTSVTKSFNRGEC", + "count": 1, + "label_entity_id": "2", + "label_asym_id": [ + "B" + ], + "auth_asym_id": [ + "E" + ] + } + }, + { + "proteinChain": { + "sequence": "AAQGKEVVLLDFAAAGGELGWLTHPYGKGWDLMQNIMNDMPIYMYSVCNVMSGDQDNWLRTNWVYRGEAERIFIELKFTVRDCNSFPGGASSCKETFNLYYAESDLDYGTNFQKRLFTKIDTIAPDEITVSSDFEARHVKLNVEERSVGPLTRKGFYLAFQDIGACVALLSVRVYYKKCPELLQGLAHFPETIAGSDAPSLATVAGTCVDHAVVPPGGEEPRMHCAVDGEWLVPIGQCLCQAGYEKVEDACQACSPGFFKFEASESPCLECPEHTLPSPEGATSCECEEGFFRAPQDPASMPCTLVPR", + "count": 1, + "label_entity_id": "3", + "label_asym_id": [ + "C" + ], + "auth_asym_id": [ + "C" + ] + } + } + ], + "covalent_bonds": [ + { + "entity1": 1, + "position1": 22, + "atom1": "SG", + "entity2": 1, + "position2": 96, + "atom2": "SG" + }, + { + "entity1": 1, + "position1": 156, + "atom1": "SG", + "entity2": 1, + "position2": 212, + "atom2": "SG" + }, + { + "entity1": 2, + "position1": 23, + "atom1": "SG", + "entity2": 2, + "position2": 88, + "atom2": "SG" + }, + { + "entity1": 2, + "position1": 133, + "atom1": "SG", + "entity2": 2, + "position2": 193, + "atom2": "SG" + }, + { + "entity1": 3, + "position1": 48, + "atom1": "SG", + "entity2": 3, + "position2": 166, + "atom2": "SG" + }, + { + "entity1": 3, + "position1": 83, + "atom1": "SG", + "entity2": 3, + "position2": 93, + "atom2": "SG" + }, + { + "entity1": 3, + "position1": 179, + "atom1": "SG", + "entity2": 3, + "position2": 225, + "atom2": "SG" + }, + { + "entity1": 3, + "position1": 208, + "atom1": "SG", + "entity2": 3, + "position2": 238, + "atom2": "SG" + }, + { + "entity1": 3, + "position1": 240, + "atom1": "SG", + "entity2": 3, + "position2": 251, + "atom2": "SG" + }, + { + "entity1": 3, + "position1": 254, + "atom1": "SG", + "entity2": 3, + "position2": 268, + "atom2": "SG" + }, + { + "entity1": 3, + "position1": 271, + "atom1": "SG", + "entity2": 3, + "position2": 285, + "atom2": "SG" + }, + { + "entity1": 3, + "position1": 287, + "atom1": "SG", + "entity2": 3, + "position2": 303, + "atom2": "SG" + } + ], + "name": "8tv1_D_E_C" + } +] \ No newline at end of file diff --git a/protenix_json/8tvd_H_L_E.json b/protenix_json/8tvd_H_L_E.json new file mode 100644 index 0000000000000000000000000000000000000000..d201bc7e963ea26c54dc963f971c15427fa12309 --- /dev/null +++ b/protenix_json/8tvd_H_L_E.json @@ -0,0 +1,80 @@ +[ + { + "sequences": [ + { + "proteinChain": { + "sequence": "AIQLTQSPSSLSASVGDRVTITCRASQGFSSALAWYQQKPGKAPKLLIYDASSLESGVPSRFSGSGSGTDFTLTISSLQPEDFATYYCQQFNSYPLTFGGGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRG", + "count": 1, + "label_entity_id": "1", + "label_asym_id": [ + "A" + ], + "auth_asym_id": [ + "L" + ] + } + }, + { + "proteinChain": { + "sequence": "EVQLVQSGAEVKKPGESLKISCQSSGYRFTIYWIGWVRQMPGKGLEWMGIIWPGDSDTRYSPSFQGQVTISADKSISTAYLQWSSLKASDTAMYYCVRGIGRYSNWFLDYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVE", + "count": 1, + "label_entity_id": "2", + "label_asym_id": [ + "B" + ], + "auth_asym_id": [ + "H" + ] + } + }, + { + "proteinChain": { + "sequence": "LDEKNSVSVDLPGEMKVLVSKEKNKDGKYDLIATVDKLELKGTSDKNNGSGVLEGVKADKSKVKLTISDDLGQTTLEVFKEDGKTLVSKKVTSKDKSSTEEKFNEKGEVSEKIITRADGTRLEYTGIKSDGSGKAKEVLKGYVLEGTLTAEKTTLVVKEGTVTLSKNISKSGEVSVELNDTDSSAATKKTAAWNSGTSTLTITVNSKKTKDLVFTKENTITVQQYDSNGTKLEGSAVEITKLDEIKNAL", + "count": 1, + "label_entity_id": "3", + "label_asym_id": [ + "C" + ], + "auth_asym_id": [ + "E" + ] + } + } + ], + "covalent_bonds": [ + { + "entity1": 1, + "position1": 23, + "atom1": "SG", + "entity2": 1, + "position2": 88, + "atom2": "SG" + }, + { + "entity1": 1, + "position1": 134, + "atom1": "SG", + "entity2": 1, + "position2": 194, + "atom2": "SG" + }, + { + "entity1": 2, + "position1": 22, + "atom1": "SG", + "entity2": 2, + "position2": 96, + "atom2": "SG" + }, + { + "entity1": 2, + "position1": 148, + "atom1": "SG", + "entity2": 2, + "position2": 204, + "atom2": "SG" + } + ], + "name": "8tvd_H_L_E" + } +] \ No newline at end of file diff --git a/protenix_json/8uky_H_L_C.json b/protenix_json/8uky_H_L_C.json new file mode 100644 index 0000000000000000000000000000000000000000..84324897b041058b363452b08ef790ade8f4d7f3 --- /dev/null +++ b/protenix_json/8uky_H_L_C.json @@ -0,0 +1,80 @@ +[ + { + "sequences": [ + { + "proteinChain": { + "sequence": "DIVMTQSHKFMSTSVGDRVSITCKASQDVGTAVAWYQQKPGQSPKLLIYWASTRHTGVPDRFTGSGSGTDFTLTISNVQSEDLADYFCQQYSSYRTFGGGTKLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC", + "count": 1, + "label_entity_id": "1", + "label_asym_id": [ + "A" + ], + "auth_asym_id": [ + "L" + ] + } + }, + { + "proteinChain": { + "sequence": "EVKLVESGAELVRPGTSVKVSCKASGYAFTNYLIEWVKQRPGQGLEWIGVINPGSGGTNYNEKFKGKATLTADKSSSTAYMQLTSLTSDDSAVYFCASPSLYGSFDYWGQGTTVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPK", + "count": 1, + "label_entity_id": "2", + "label_asym_id": [ + "B" + ], + "auth_asym_id": [ + "H" + ] + } + }, + { + "proteinChain": { + "sequence": "GPLGSMSEEQVAQDTEEVFRSYVFYRHQQEQEAEGVAAPADPEMVTLPLQPSSTMGQVGRQLAIIGDDINRRYDSEFQTMLQHLQPTAENAYEYFTKIATSLFESGINWGRVVALLGFGYRLALHVYQHGLTGFLGQVTRFVVDFMLHHSIARWIAQRGGWVAALNLGNG", + "count": 1, + "label_entity_id": "3", + "label_asym_id": [ + "C" + ], + "auth_asym_id": [ + "C" + ] + } + } + ], + "covalent_bonds": [ + { + "entity1": 1, + "position1": 23, + "atom1": "SG", + "entity2": 1, + "position2": 88, + "atom2": "SG" + }, + { + "entity1": 1, + "position1": 133, + "atom1": "SG", + "entity2": 1, + "position2": 193, + "atom2": "SG" + }, + { + "entity1": 2, + "position1": 22, + "atom1": "SG", + "entity2": 2, + "position2": 96, + "atom2": "SG" + }, + { + "entity1": 2, + "position1": 145, + "atom1": "SG", + "entity2": 2, + "position2": 201, + "atom2": "SG" + } + ], + "name": "8uky_H_L_C" + } +] \ No newline at end of file diff --git a/protenix_json/8urf_H_L_A.json b/protenix_json/8urf_H_L_A.json new file mode 100644 index 0000000000000000000000000000000000000000..4463b92446115d8e6587c5bbcd50e751773476d1 --- /dev/null +++ b/protenix_json/8urf_H_L_A.json @@ -0,0 +1,110 @@ +[ + { + "sequences": [ + { + "proteinChain": { + "sequence": "DIQMTQSPASLSASVGETVTITCRASENIYSYLAWYQQKQGKSPQLLVYNAKTLAEGVPSRFSGSGSGTQFSLKINSLQPEDFGNYHCQHHYDTPYTFGGGTKLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC", + "count": 1, + "label_entity_id": "1", + "label_asym_id": [ + "A" + ], + "auth_asym_id": [ + "L" + ] + } + }, + { + "proteinChain": { + "sequence": "QVQLQQSGPELVRPGTSVKISCKASGYTFLTYWMNWVKQRPGQGLEWIGQIFPATGSTHYNEMFKDKATLNEDTSSNTAYMQLSGLTSEDTAVYFCARSRYRNGLDYWGQGTTLTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCGSGSGHHHHHH", + "count": 1, + "label_entity_id": "2", + "label_asym_id": [ + "B" + ], + "auth_asym_id": [ + "H" + ], + "modifications": [ + { + "ptmPosition": 1, + "ptmType": "CCD_PCA" + } + ] + } + }, + { + "proteinChain": { + "sequence": "CPVNWVEHQGSCYWFSHSGKAWAEAEKYCQLENAHLVVINSWEEQKFIVQHTNPFNTWIGLTDSDGSWKWVDGTDYRHNYKNWAVTQPDNWHGHELGGSEDCVEVQPDGRWNDDFCLQVYRWVCEKRRNATGEVASGRGLNDIFEAQKIEWHEHHHHHH", + "count": 1, + "label_entity_id": "3", + "label_asym_id": [ + "C" + ], + "auth_asym_id": [ + "A" + ] + } + } + ], + "covalent_bonds": [ + { + "entity1": 1, + "position1": 23, + "atom1": "SG", + "entity2": 1, + "position2": 88, + "atom2": "SG" + }, + { + "entity1": 1, + "position1": 134, + "atom1": "SG", + "entity2": 1, + "position2": 194, + "atom2": "SG" + }, + { + "entity1": 2, + "position1": 22, + "atom1": "SG", + "entity2": 2, + "position2": 96, + "atom2": "SG" + }, + { + "entity1": 2, + "position1": 145, + "atom1": "SG", + "entity2": 2, + "position2": 201, + "atom2": "SG" + }, + { + "entity1": 3, + "position1": 1, + "atom1": "SG", + "entity2": 3, + "position2": 12, + "atom2": "SG" + }, + { + "entity1": 3, + "position1": 29, + "atom1": "SG", + "entity2": 3, + "position2": 124, + "atom2": "SG" + }, + { + "entity1": 3, + "position1": 102, + "atom1": "SG", + "entity2": 3, + "position2": 116, + "atom2": "SG" + } + ], + "name": "8urf_H_L_A" + } +] \ No newline at end of file diff --git a/protenix_json/8v4f_B_D_A.json b/protenix_json/8v4f_B_D_A.json new file mode 100644 index 0000000000000000000000000000000000000000..155ffc555a083e0139ee3cd2b4f234be05b06bca --- /dev/null +++ b/protenix_json/8v4f_B_D_A.json @@ -0,0 +1,96 @@ +[ + { + "sequences": [ + { + "proteinChain": { + "sequence": "DVHLVESGGGLIQPGGSLRLSCAASEFIVSANYMSWVRQAPGEGLQWVSVIYPGGSTFYAESVKGRFTISRDNSRNTLYLQMNSLRAEDTGVYYCARDYGDFYFDYWGQGTLVTVSS", + "count": 1, + "label_entity_id": "1", + "label_asym_id": [ + "A" + ], + "auth_asym_id": [ + "B" + ] + } + }, + { + "proteinChain": { + "sequence": "EIVLTQSPGTLSLSPGERASLSCRASQSLSTYLAWYQQKPGQAPRLLIFGASSRASGIPDRFSGGGSGTDFTLTISRLEPEDFAVYYCQQYGSSPRTFGQGTKVEI", + "count": 1, + "label_entity_id": "2", + "label_asym_id": [ + "B" + ], + "auth_asym_id": [ + "D" + ] + } + }, + { + "proteinChain": { + "sequence": "NLCPFDEVFNATRFASVYAWNRKRISNCVADYSVLYNLAPFFTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGNIADYNYKLPDDFTGCVIAWNSNKLDSKVSGNYNYLYRLFRKSNLKPFERDISTEIYQAGNKPCNGVAGFNCYFPLRSYSFRPTYGVGHQPYRVVVLSFELLHAPATVCG", + "count": 1, + "label_entity_id": "3", + "label_asym_id": [ + "C" + ], + "auth_asym_id": [ + "A" + ] + } + } + ], + "covalent_bonds": [ + { + "entity1": 1, + "position1": 22, + "atom1": "SG", + "entity2": 1, + "position2": 95, + "atom2": "SG" + }, + { + "entity1": 2, + "position1": 23, + "atom1": "SG", + "entity2": 2, + "position2": 88, + "atom2": "SG" + }, + { + "entity1": 3, + "position1": 3, + "atom1": "SG", + "entity2": 3, + "position2": 28, + "atom2": "SG" + }, + { + "entity1": 3, + "position1": 46, + "atom1": "SG", + "entity2": 3, + "position2": 99, + "atom2": "SG" + }, + { + "entity1": 3, + "position1": 58, + "atom1": "SG", + "entity2": 3, + "position2": 192, + "atom2": "SG" + }, + { + "entity1": 3, + "position1": 147, + "atom1": "SG", + "entity2": 3, + "position2": 155, + "atom2": "SG" + } + ], + "name": "8v4f_B_D_A" + } +] \ No newline at end of file diff --git a/protenix_json/8v5l_H_L_A.json b/protenix_json/8v5l_H_L_A.json new file mode 100644 index 0000000000000000000000000000000000000000..c862aedab8e8d65ef866b79a566d1984a1d1327b --- /dev/null +++ b/protenix_json/8v5l_H_L_A.json @@ -0,0 +1,80 @@ +[ + { + "sequences": [ + { + "proteinChain": { + "sequence": "EVQLVQSGAEMKKPGASVKVSCKTSGYVFNEYYIHWVRQAPGQGLEWLGRINPNSGDANYAPKFQGRVTLTRDTSIRTYFMELNRLRSDDTAVYYCARIMYFEYDSWSDYWGQGTLVTVSSAASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPKSCDKGSENLYFQGSHHHHHH", + "count": 1, + "label_entity_id": "1", + "label_asym_id": [ + "A" + ], + "auth_asym_id": [ + "H" + ] + } + }, + { + "proteinChain": { + "sequence": "DIQMTQSPSSLSASVGDRVTITCRASQSIRSNLNWYQQKPGKAPNVLIYATSSLQSGVPSRFSGSGSGTDFTLTIRSLQPEDFATYYCQQSYSLPWTFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC", + "count": 1, + "label_entity_id": "2", + "label_asym_id": [ + "B" + ], + "auth_asym_id": [ + "L" + ] + } + }, + { + "proteinChain": { + "sequence": "IVNVDQRQYGDVFKGDLNPKPQGQRLIEVSVEENHPFTLRAPIQRIYGVRYTETWSFLPSLTCTGDAAPAIQHICLKHTTCFQDVVVDVDCAENTKEDQLAEISYRFQGKKEADQPWIVVNTSTLFDELELDPPEIEPGVLKVLRTEKQYLGVYIWNMRGSDGTSTYATFLVTWKGDEKTRNPTPAVTPQENLYFQGHHHHHH", + "count": 1, + "label_entity_id": "3", + "label_asym_id": [ + "C" + ], + "auth_asym_id": [ + "A" + ] + } + } + ], + "covalent_bonds": [ + { + "entity1": 1, + "position1": 22, + "atom1": "SG", + "entity2": 1, + "position2": 96, + "atom2": "SG" + }, + { + "entity1": 1, + "position1": 149, + "atom1": "SG", + "entity2": 1, + "position2": 205, + "atom2": "SG" + }, + { + "entity1": 2, + "position1": 23, + "atom1": "SG", + "entity2": 2, + "position2": 88, + "atom2": "SG" + }, + { + "entity1": 2, + "position1": 134, + "atom1": "SG", + "entity2": 2, + "position2": 194, + "atom2": "SG" + } + ], + "name": "8v5l_H_L_A" + } +] \ No newline at end of file diff --git a/protenix_json/8vul_H_L_A.json b/protenix_json/8vul_H_L_A.json new file mode 100644 index 0000000000000000000000000000000000000000..ccd5d5c722aa4cad8032f3594109586b22b3098a --- /dev/null +++ b/protenix_json/8vul_H_L_A.json @@ -0,0 +1,72 @@ +[ + { + "sequences": [ + { + "proteinChain": { + "sequence": "KIVNIGAVLSTRKHEQMFREAVNQANKRHGSWKIQLNATSVTHKPNAIQMALSVCEDLISSQVYAILVSHPPTPNDHFTPTPVSYTAGFYRIPVLGLTTRMSIYSDKSIHLSFLRTVPPYSHQSSVWFEMMRVYSWNHIILLVSDDHEGRAAQKRLETLLEERESKAEKVLQFDPGTKNVTALLMEAKELEARVIILSASEDDAATVYRAAAMLNMTGSGYVWLVGEREISGNALRYAPDGILGLQLINGKNESAHISDAVGVVAQAVHELLEKENITDPPRGCVGNTNIWKTGPLFKRVLMSSKYADGVTGRVEFNEDGDRKFANYSIMNLQNRKLVQVGIYNGTHVIPNDRKIIWPGGETEKPRGYQ", + "count": 1, + "label_entity_id": "1", + "label_asym_id": [ + "A" + ], + "auth_asym_id": [ + "A" + ] + } + }, + { + "proteinChain": { + "sequence": "LQLQESGPGLVKPSQTLSLTCTVSGGSISSSNWWSWVRQPPGKGLEWIGEIYHSGNTNYNPSLKSRVTVSVDKSKNQFSLKLTSVTAADTAVYYCARDVSGGVNWFDPWGQGTLVTVSS", + "count": 1, + "label_entity_id": "3", + "label_asym_id": [ + "C" + ], + "auth_asym_id": [ + "H" + ] + } + }, + { + "proteinChain": { + "sequence": "NFMLTQPHSVSESPGKTVTISCTRSSGSIASNYVQWYQQRPGSAPTTVIYEDNQRPSGVPDRFSGSIDSSSNSASLTISGLKTEDEADYYCQSYDSSTVVFGGGTKLTV", + "count": 1, + "label_entity_id": "4", + "label_asym_id": [ + "D" + ], + "auth_asym_id": [ + "L" + ] + } + } + ], + "covalent_bonds": [ + { + "entity1": 1, + "position1": 55, + "atom1": "SG", + "entity2": 1, + "position2": 284, + "atom2": "SG" + }, + { + "entity1": 2, + "position1": 21, + "atom1": "SG", + "entity2": 2, + "position2": 95, + "atom2": "SG" + }, + { + "entity1": 3, + "position1": 22, + "atom1": "SG", + "entity2": 3, + "position2": 91, + "atom2": "SG" + } + ], + "name": "8vul_H_L_A" + } +] \ No newline at end of file diff --git a/protenix_json/8vut_H_L_A.json b/protenix_json/8vut_H_L_A.json new file mode 100644 index 0000000000000000000000000000000000000000..49af9cac507b2778ac4657fc70da1c8621185c55 --- /dev/null +++ b/protenix_json/8vut_H_L_A.json @@ -0,0 +1,128 @@ +[ + { + "sequences": [ + { + "proteinChain": { + "sequence": "KIVNIGAVLSTRKHEQMFREAVNQANKRHGSWKIQLNATSVTHKPNAIQMALSVCEDLISSQVYAILVSHPPTPNDHFTPTPVSYTAGFYRIPVLGLTTRMSIYSDKSIHLSFLRTVPPYSHQSSVWFEMMRVYSWNHIILLVSDDHEGRAAQKRLETLLEERESKAEKVLQFDPGTKNVTALLMEAKELEARVIILSASEDDAATVYRAAAMLNMTGSGYVWLVGEREISGNALRYAPDGILGLQLINGKNESAHISDAVGVVAQAVHELLEKENITDPPRGCVGNTNIWKTGPLFKRVLMSSKYADGVTGRVEFNEDGDRKFANYSIMNLQNRKLVQVGIYNGTHVIPNDRKIIWPGGETEKPRGYQMSTRLKIVTIHQEPFVYVKPTLSDGTCKEEFTVNGDPVKKVICTGPNDTSPGSPRHTVPQCCYGFCIDLLIKLARTMNFTYEVHLVADGKFGTQERVNNSNKKEWNGMMGELLSGQADMIVAPLTINNERAQYIEFSKPFKYQGLTILVKKEIPRSTLDSFMQPFQSTLWLLVGLSVHVVAVMLYLLDRFSPFGRFKVNSEEEEEDALTLSSAMWFSWGVLLNSGIGEGAPRSFSARILGMVWAGFAMIIVASYTANLAAFLVLDRPEERITGINDPRLRNPSDKFIYATVKQSSVDIYFRRQVELSTMYRHMEKHNYESAAEAIQAVRDNKLHAFIWDSAVLEFEASQKCDLVTTGELFFRSGFGIGMRKDSPWKQNVSLSILKSHENGFMEDLDKTWVRYQECDSRSNAPATLTFENMAGVFMLVAGGIVAGIFLIFIEIAYKRHK", + "count": 1, + "label_entity_id": "1", + "label_asym_id": [ + "A" + ], + "auth_asym_id": [ + "A" + ] + } + }, + { + "proteinChain": { + "sequence": "EVQLVESGGGLVQPGRSLRLSCAASGFTFDDYAMHWVRQVPGKGLEWVSGISWSSGSIGYADSVKGRFTISRDNAKNSLYLQMNSLRAEDTALYYCAKDRASSWYAYGMDVWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKV", + "count": 1, + "label_entity_id": "3", + "label_asym_id": [ + "E" + ], + "auth_asym_id": [ + "H" + ] + } + }, + { + "proteinChain": { + "sequence": "NFMLTQPHSVSESPGKTVTISCTRSSGSIASNYVQWYQQRPGSSPTTVIYDDNQRPSGVPNRFSGSIDSSSNSASLIISGLKTEDEADYYCQSTRVFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPT", + "count": 1, + "label_entity_id": "4", + "label_asym_id": [ + "G" + ], + "auth_asym_id": [ + "L" + ] + } + } + ], + "covalent_bonds": [ + { + "entity1": 1, + "position1": 558, + "atom1": "C", + "entity2": 1, + "position2": 578, + "atom2": "N" + }, + { + "entity1": 1, + "position1": 774, + "atom1": "C", + "entity2": 1, + "position2": 784, + "atom2": "N" + }, + { + "entity1": 1, + "position1": 55, + "atom1": "SG", + "entity2": 1, + "position2": 284, + "atom2": "SG" + }, + { + "entity1": 1, + "position1": 396, + "atom1": "SG", + "entity2": 1, + "position2": 430, + "atom2": "SG" + }, + { + "entity1": 1, + "position1": 412, + "atom1": "SG", + "entity2": 1, + "position2": 431, + "atom2": "SG" + }, + { + "entity1": 1, + "position1": 720, + "atom1": "SG", + "entity2": 1, + "position2": 774, + "atom2": "SG" + }, + { + "entity1": 2, + "position1": 22, + "atom1": "SG", + "entity2": 2, + "position2": 96, + "atom2": "SG" + }, + { + "entity1": 2, + "position1": 149, + "atom1": "SG", + "entity2": 2, + "position2": 205, + "atom2": "SG" + }, + { + "entity1": 3, + "position1": 22, + "atom1": "SG", + "entity2": 3, + "position2": 91, + "atom2": "SG" + }, + { + "entity1": 3, + "position1": 134, + "atom1": "SG", + "entity2": 3, + "position2": 193, + "atom2": "SG" + } + ], + "name": "8vut_H_L_A" + } +] \ No newline at end of file diff --git a/protenix_json/8vvh_H_L_A.json b/protenix_json/8vvh_H_L_A.json new file mode 100644 index 0000000000000000000000000000000000000000..5e18f4556a98da0c9ddc8a211fd3792d8f2d138a --- /dev/null +++ b/protenix_json/8vvh_H_L_A.json @@ -0,0 +1,72 @@ +[ + { + "sequences": [ + { + "proteinChain": { + "sequence": "KIVNIGAVLSTRKHEQMFREAVNQANKRHGSWKIQLQATSVTHKPNAIQMALSVCEDLISSQVYAILVSHPPTPNDHFTPTPVSYTAGFYRIPVLGLTTRMSIYSDKSIHLSFLRTVPPYSHQSSVWFEMMRVYNWNHIILLVSDDHEGRAAQKRLETLLEERESKAEKVLQFDPGTKNVTALLMEARELEARVIILSASEDDAATVYRAAAMLDMTGSGYVWLVGEREISGNALRYAPDGIIGLQLINGKNESAHISDAVGVVAQAVHELLEKENITDPPRGCVGNTNIWKTGPLFKRVLMSSKYADGVTGRVEFNEDGDRKFAQYSIMNLQNRKLVQVGIYNGTHVIPNDRKIIWPGGETEKPRGYQ", + "count": 1, + "label_entity_id": "1", + "label_asym_id": [ + "A" + ], + "auth_asym_id": [ + "A" + ] + } + }, + { + "proteinChain": { + "sequence": "LQLQESGPGLVKPSQTLSLTCTVSGGSISSSNWWSWVRQPPGKGLEWIGEIYHSGNTNYNPSLKSRVTVSVDKSKNQFSLKLTSVTAADTAVYYCARDVSGGVNWFDPWGQGTLV", + "count": 1, + "label_entity_id": "3", + "label_asym_id": [ + "C" + ], + "auth_asym_id": [ + "H" + ] + } + }, + { + "proteinChain": { + "sequence": "NFMLTQPHSVSESPGKTVTISCTRSSGSIASNYVQWYQQRPGSAPTTVIYEDNQRPSGVPDRFSGSIDSSSNSASLTISGLKTEDEADYYCQSYDSSTVVFGGGTKLT", + "count": 1, + "label_entity_id": "4", + "label_asym_id": [ + "D" + ], + "auth_asym_id": [ + "L" + ] + } + } + ], + "covalent_bonds": [ + { + "entity1": 1, + "position1": 55, + "atom1": "SG", + "entity2": 1, + "position2": 284, + "atom2": "SG" + }, + { + "entity1": 2, + "position1": 21, + "atom1": "SG", + "entity2": 2, + "position2": 95, + "atom2": "SG" + }, + { + "entity1": 3, + "position1": 22, + "atom1": "SG", + "entity2": 3, + "position2": 91, + "atom2": "SG" + } + ], + "name": "8vvh_H_L_A" + } +] \ No newline at end of file diff --git a/protenix_json/8vww_B_C_A.json b/protenix_json/8vww_B_C_A.json new file mode 100644 index 0000000000000000000000000000000000000000..3c4e1de33d55097ac59f157f72c3a7f99d367b94 --- /dev/null +++ b/protenix_json/8vww_B_C_A.json @@ -0,0 +1,96 @@ +[ + { + "sequences": [ + { + "proteinChain": { + "sequence": "NLKMEIILTLSQGLKKYYGKILRLLQLTLEEDTEGLLEWCKRNLGLDCDDTFFQKRIEEFFITGEGHFNEVLQFRTPGTLSTTESTPAGLPTAEPFKSYFAKGFLSIDSGYYSAKCYSGTSNSGLQLINITRHSTRIVDTPGPKITNLKTINCINLKASIFKEHREVEINVLLPQVAVNLSNCHVVIKSHVCDYSLDIDGAVRLPHIYHEGVFIPGTYKIVIDKKNKLNDRCTLFTDCVIKGREVRKGQSVLRQYKTEIRIGKASTGS", + "count": 1, + "label_entity_id": "1", + "label_asym_id": [ + "A" + ], + "auth_asym_id": [ + "A" + ] + } + }, + { + "proteinChain": { + "sequence": "EVQLVESGGVLVQPGGSLRLSCAASGFTVNSNYMTWVRQAPGKGLEWVSVIYSGGYTYYADSVKGRFAISRDNSKNTVYLQMNSLRVEDTAVYYCARLRLSSSWYPEAFDYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCDKG", + "count": 1, + "label_entity_id": "2", + "label_asym_id": [ + "B" + ], + "auth_asym_id": [ + "B" + ] + } + }, + { + "proteinChain": { + "sequence": "AILLTQSPSSLSASVGDRVTITCRASQGISSALAWYQQKPGRAPKVLIYDASSLANGVPSRFSGSGSGTDFTLTINSLQPEDFATYYCQQFNYYPLTFGGGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTQGTTSVTKSFNRGEC", + "count": 1, + "label_entity_id": "3", + "label_asym_id": [ + "C" + ], + "auth_asym_id": [ + "C" + ] + } + } + ], + "covalent_bonds": [ + { + "entity1": 1, + "position1": 40, + "atom1": "SG", + "entity2": 1, + "position2": 48, + "atom2": "SG" + }, + { + "entity1": 1, + "position1": 116, + "atom1": "SG", + "entity2": 1, + "position2": 192, + "atom2": "SG" + }, + { + "entity1": 1, + "position1": 153, + "atom1": "SG", + "entity2": 1, + "position2": 238, + "atom2": "SG" + }, + { + "entity1": 1, + "position1": 183, + "atom1": "SG", + "entity2": 1, + "position2": 232, + "atom2": "SG" + }, + { + "entity1": 2, + "position1": 22, + "atom1": "SG", + "entity2": 2, + "position2": 95, + "atom2": "SG" + }, + { + "entity1": 3, + "position1": 23, + "atom1": "SG", + "entity2": 3, + "position2": 88, + "atom2": "SG" + } + ], + "name": "8vww_B_C_A" + } +] \ No newline at end of file diff --git a/protenix_json/8w0v_H_L_C.json b/protenix_json/8w0v_H_L_C.json new file mode 100644 index 0000000000000000000000000000000000000000..11d5359505846eabfa728f2a44815c99157bfc9b --- /dev/null +++ b/protenix_json/8w0v_H_L_C.json @@ -0,0 +1,152 @@ +[ + { + "sequences": [ + { + "proteinChain": { + "sequence": "STHVTGGTASHTTRHFASLFSSGASQRVQLINTNGSWHINRTALNCNDSLHTGFLAALFYTHKFNASGCPERMAHCRPIDEFAQGWGPITYAEGHGSDQRPYCWHYAPRQCGTIPASQVCGPVYCFTPSPVVVGTTDRFGAPTYTWGENETDVLILNNTRPPQGNWFGCTWMNSTGFTKTCGGPPCNIGGVGNNTLTCPTDCFRKHPEATYTKCGSGPWLTPRCLVDYPYRLWHYPCTVNFTIFKVRMYVGGVEHRLNAACN", + "count": 1, + "label_entity_id": "1", + "label_asym_id": [ + "A" + ], + "auth_asym_id": [ + "C" + ] + } + }, + { + "proteinChain": { + "sequence": "QVQLVQSGAEIKKPGASVKVSCKASGYTFISNYFHWVRQAPGQGLEWMGIINPSSGSTTYGQKFQGRVTLTSDTSASIVYLELSRLRSEDTAVYYCVSPRIAHCRGGRCYETLDWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPKSCDKTHHHHHH", + "count": 1, + "label_entity_id": "2", + "label_asym_id": [ + "B" + ], + "auth_asym_id": [ + "H" + ] + } + }, + { + "proteinChain": { + "sequence": "EIVLTQSPVSLSLSPGERATLSCRASQSVSSNYLAWYQLKPGRAPRLLIYGASSRAPGIPDRFSGSGSGTDFTLTISRLEPEDFAVYYCQQYGISSWTFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC", + "count": 1, + "label_entity_id": "3", + "label_asym_id": [ + "C" + ], + "auth_asym_id": [ + "L" + ] + } + } + ], + "covalent_bonds": [ + { + "entity1": 1, + "position1": 46, + "atom1": "SG", + "entity2": 1, + "position2": 120, + "atom2": "SG" + }, + { + "entity1": 1, + "position1": 69, + "atom1": "SG", + "entity2": 1, + "position2": 237, + "atom2": "SG" + }, + { + "entity1": 1, + "position1": 76, + "atom1": "SG", + "entity2": 1, + "position2": 103, + "atom2": "SG" + }, + { + "entity1": 1, + "position1": 111, + "atom1": "SG", + "entity2": 1, + "position2": 181, + "atom2": "SG" + }, + { + "entity1": 1, + "position1": 125, + "atom1": "SG", + "entity2": 1, + "position2": 169, + "atom2": "SG" + }, + { + "entity1": 1, + "position1": 186, + "atom1": "SG", + "entity2": 1, + "position2": 214, + "atom2": "SG" + }, + { + "entity1": 1, + "position1": 198, + "atom1": "SG", + "entity2": 1, + "position2": 202, + "atom2": "SG" + }, + { + "entity1": 1, + "position1": 224, + "atom1": "SG", + "entity2": 1, + "position2": 261, + "atom2": "SG" + }, + { + "entity1": 2, + "position1": 22, + "atom1": "SG", + "entity2": 2, + "position2": 96, + "atom2": "SG" + }, + { + "entity1": 2, + "position1": 104, + "atom1": "SG", + "entity2": 2, + "position2": 109, + "atom2": "SG" + }, + { + "entity1": 2, + "position1": 152, + "atom1": "SG", + "entity2": 2, + "position2": 208, + "atom2": "SG" + }, + { + "entity1": 3, + "position1": 23, + "atom1": "SG", + "entity2": 3, + "position2": 89, + "atom2": "SG" + }, + { + "entity1": 3, + "position1": 135, + "atom1": "SG", + "entity2": 3, + "position2": 195, + "atom2": "SG" + } + ], + "name": "8w0v_H_L_C" + } +] \ No newline at end of file diff --git a/protenix_json/8x0x_G_K_A.json b/protenix_json/8x0x_G_K_A.json new file mode 100644 index 0000000000000000000000000000000000000000..ff561a8ecf456b2b4a1aca8a68d6cd82cfd535dd --- /dev/null +++ b/protenix_json/8x0x_G_K_A.json @@ -0,0 +1,104 @@ +[ + { + "sequences": [ + { + "proteinChain": { + "sequence": "NLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCGPK", + "count": 1, + "label_entity_id": "1", + "label_asym_id": [ + "B" + ], + "auth_asym_id": [ + "A" + ] + } + }, + { + "proteinChain": { + "sequence": "EVQLLESGGGLVQPGGSLRLSCAASGVTVTSNYMSWVRQAPGKGLEWVSVIYSGGSTYYADSVKGRFTISRHNSKNTLYLQMNSLRAEDTAVYYCARDLREAGGMDVWGQGTTVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSC", + "count": 1, + "label_entity_id": "2", + "label_asym_id": [ + "C" + ], + "auth_asym_id": [ + "G" + ] + } + }, + { + "proteinChain": { + "sequence": "DIVMTQSPSSLSASVGDRVTITCQASQDINNYLNWYQQKPGKAPKLLIYDASNLETGVPSRFSGSGSGTDFTFTISSLQPEDIATYYCQQFDNLPWTFGQGTKVEIRRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC", + "count": 1, + "label_entity_id": "3", + "label_asym_id": [ + "D" + ], + "auth_asym_id": [ + "K" + ] + } + } + ], + "covalent_bonds": [ + { + "entity1": 1, + "position1": 3, + "atom1": "SG", + "entity2": 1, + "position2": 28, + "atom2": "SG" + }, + { + "entity1": 1, + "position1": 46, + "atom1": "SG", + "entity2": 1, + "position2": 99, + "atom2": "SG" + }, + { + "entity1": 1, + "position1": 147, + "atom1": "SG", + "entity2": 1, + "position2": 155, + "atom2": "SG" + }, + { + "entity1": 2, + "position1": 22, + "atom1": "SG", + "entity2": 2, + "position2": 95, + "atom2": "SG" + }, + { + "entity1": 2, + "position1": 145, + "atom1": "SG", + "entity2": 2, + "position2": 201, + "atom2": "SG" + }, + { + "entity1": 3, + "position1": 23, + "atom1": "SG", + "entity2": 3, + "position2": 88, + "atom2": "SG" + }, + { + "entity1": 3, + "position1": 134, + "atom1": "SG", + "entity2": 3, + "position2": 194, + "atom2": "SG" + } + ], + "name": "8x0x_G_K_A" + } +] \ No newline at end of file diff --git a/protenix_json/8xi6_D_E_A.json b/protenix_json/8xi6_D_E_A.json new file mode 100644 index 0000000000000000000000000000000000000000..267695f452e05c8e4fbb851365f07975ab5212ae --- /dev/null +++ b/protenix_json/8xi6_D_E_A.json @@ -0,0 +1,152 @@ +[ + { + "sequences": [ + { + "proteinChain": { + "sequence": "MFVFLVLLPLVSSQCVNLITRTQSYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAISGTNGTKRFDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSKTQSLLIVNNATNVVIKVCEFQFCNDPFLDVYYHKNNKSWMESEFRVYSSANNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLGRDLPQGFSALEPLVDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTESIVRFPNITNLCPFDEVFNATTFASVYAWNRKRISNCVADYSVLYNFAPFFAFKCYGVSPTKLNDLCFTNVYADSFVIRGNEVSQIAPGQTGNIADYNYKLPDDFTGCVIAWNSNKLDSTVGGNYNYRYRLFRKSKLKPFERDISTEIYQAGNKPCNGVAGVNCYFPLQSYGFRPTYGVGHQPYRVVVLSFELLHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQGVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIGAEYVNNSYECDIPIGAGICASYQTQTKSHASVASQSIIAYTMSLGAENSVAYSNNSIAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLKRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKYFGGFNFSQILPDPSKPSKRSPIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGPALQIPFPMQMAYRFNGIGVTQNVLYENQKLIANQFNSAIGKIQDSLSSTPSALGKLQDVVNHNAQALNTLVKQLSSKFGAISSVLNDILSRLDPPEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQIITTDNTFVSGNCDVVIGIVNNTVYDPLQPELDSFKEELDKYFKNHTSPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKWPLEVLFQGPGYIPEAPRDGQAYVRKDGEWVFLSTFLGHHHHHH", + "count": 1, + "label_entity_id": "1", + "label_asym_id": [ + "A" + ], + "auth_asym_id": [ + "A" + ] + } + }, + { + "proteinChain": { + "sequence": "EVQLLESGGGLVQPGGSLRLSCAASGFSFSGYALSWVRQTPGKGLEWVSSISGSADSTYYADSVKGRFTISRDNSKNTFYLQMSSLRADDTAIYYCAKPPLGSNLFAVGYHFDYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCDKTH", + "count": 1, + "label_entity_id": "2", + "label_asym_id": [ + "D" + ], + "auth_asym_id": [ + "D" + ] + } + }, + { + "proteinChain": { + "sequence": "SYVLTQPPSVSVAPGKTARVTCGANNIGSESVHWYQQKAGQAPVLVIYYDRGRPSGIPERFSGSNSGNTATLTISRVEAGDEAEYYCQVWDKSSDHVVFGGGTKLIVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECS", + "count": 1, + "label_entity_id": "3", + "label_asym_id": [ + "E" + ], + "auth_asym_id": [ + "E" + ] + } + } + ], + "covalent_bonds": [ + { + "entity1": 1, + "position1": 286, + "atom1": "SG", + "entity2": 1, + "position2": 296, + "atom2": "SG" + }, + { + "entity1": 1, + "position1": 331, + "atom1": "SG", + "entity2": 1, + "position2": 356, + "atom2": "SG" + }, + { + "entity1": 1, + "position1": 374, + "atom1": "SG", + "entity2": 1, + "position2": 427, + "atom2": "SG" + }, + { + "entity1": 1, + "position1": 475, + "atom1": "SG", + "entity2": 1, + "position2": 483, + "atom2": "SG" + }, + { + "entity1": 1, + "position1": 533, + "atom1": "SG", + "entity2": 1, + "position2": 585, + "atom2": "SG" + }, + { + "entity1": 1, + "position1": 612, + "atom1": "SG", + "entity2": 1, + "position2": 644, + "atom2": "SG" + }, + { + "entity1": 1, + "position1": 657, + "atom1": "SG", + "entity2": 1, + "position2": 666, + "atom2": "SG" + }, + { + "entity1": 1, + "position1": 730, + "atom1": "SG", + "entity2": 1, + "position2": 752, + "atom2": "SG" + }, + { + "entity1": 1, + "position1": 735, + "atom1": "SG", + "entity2": 1, + "position2": 741, + "atom2": "SG" + }, + { + "entity1": 1, + "position1": 1024, + "atom1": "SG", + "entity2": 1, + "position2": 1035, + "atom2": "SG" + }, + { + "entity1": 1, + "position1": 1074, + "atom1": "SG", + "entity2": 1, + "position2": 1118, + "atom2": "SG" + }, + { + "entity1": 2, + "position1": 22, + "atom1": "SG", + "entity2": 2, + "position2": 96, + "atom2": "SG" + }, + { + "entity1": 3, + "position1": 22, + "atom1": "SG", + "entity2": 3, + "position2": 87, + "atom2": "SG" + } + ], + "name": "8xi6_D_E_A" + } +] \ No newline at end of file diff --git a/protenix_json/8xk2_B__A.json b/protenix_json/8xk2_B__A.json new file mode 100644 index 0000000000000000000000000000000000000000..36608aa7fe62548471ec7ce3a496caf4a8a2c222 --- /dev/null +++ b/protenix_json/8xk2_B__A.json @@ -0,0 +1,69 @@ +[ + { + "sequences": [ + { + "proteinChain": { + "sequence": "RVQPTESIVRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCGPKKSTLEVLFQ", + "count": 1, + "label_entity_id": "1", + "label_asym_id": [ + "A" + ], + "auth_asym_id": [ + "A" + ] + } + }, + { + "proteinChain": { + "sequence": "EVQLVESGGGLVQPGGSLRLSCAASGRTFRVNLMGWFRQAPGKGRELVASINGFDDITYYPDSVEGRFTISRDNAKRMVYLQMNSLRAEDTAVYYCAAYDSDYDGRLFNYWGQGTQVTVSS", + "count": 1, + "label_entity_id": "2", + "label_asym_id": [ + "B" + ], + "auth_asym_id": [ + "B" + ] + } + } + ], + "covalent_bonds": [ + { + "entity1": 1, + "position1": 18, + "atom1": "SG", + "entity2": 1, + "position2": 43, + "atom2": "SG" + }, + { + "entity1": 1, + "position1": 61, + "atom1": "SG", + "entity2": 1, + "position2": 114, + "atom2": "SG" + }, + { + "entity1": 1, + "position1": 162, + "atom1": "SG", + "copy1": 1, + "entity2": 1, + "position2": 170, + "atom2": "SG", + "copy2": 1 + }, + { + "entity1": 2, + "position1": 22, + "atom1": "SG", + "entity2": 2, + "position2": 96, + "atom2": "SG" + } + ], + "name": "8xk2_B__A" + } +] \ No newline at end of file diff --git a/protenix_json/8xki_D__C.json b/protenix_json/8xki_D__C.json new file mode 100644 index 0000000000000000000000000000000000000000..6a4faf7c415e1971fed5d693810395e928b595be --- /dev/null +++ b/protenix_json/8xki_D__C.json @@ -0,0 +1,133 @@ +[ + { + "sequences": [ + { + "proteinChain": { + "sequence": "EVQLVESGGGLVQPGGSLRLSCAASGRTFRVNLMGWFRQAPGKGRELVASINGFDDITYYPDSVEGRFTISRDNAKRMVYLQMNSLRAEDTAVYYCAAYDSDYDGRLFNYWGQGTQVTVSS", + "count": 1, + "label_entity_id": "1", + "label_asym_id": [ + "A" + ], + "auth_asym_id": [ + "D" + ] + } + }, + { + "proteinChain": { + "sequence": "MFVFLVLLPLVSSQCVNLTTRTQLPPAYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIHVSGTNGTKRFDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSKTQSLLIVNNATNVVIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSANNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLVRDLPQGFSALEPLVDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTESIVRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTQTNSPGSASSVASQSIIAYTMSLGAENSVAYSNNSIAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKPSKRSPIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGPALQIPFPMQMAYRFNGIGVTQNVLYENQKLIANQFNSAIGKIQDSLSSTPSALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDPPEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQIITTDNTFVSGNCDVVIGIVNNTVYDPLQPELDSFKEELDKYFKNHTSPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQGSGYIPEAPRDGQAYVRKDGEWVFLSTFLSGLEVLFQGPGGWSHPQFEKGGGSGGGSGGSAWSHPQFEKGGSHHHHHHHH", + "count": 1, + "label_entity_id": "2", + "label_asym_id": [ + "D" + ], + "auth_asym_id": [ + "C" + ] + } + } + ], + "covalent_bonds": [ + { + "entity1": 1, + "position1": 22, + "atom1": "SG", + "entity2": 1, + "position2": 96, + "atom2": "SG" + }, + { + "entity1": 2, + "position1": 131, + "atom1": "SG", + "entity2": 2, + "position2": 166, + "atom2": "SG" + }, + { + "entity1": 2, + "position1": 336, + "atom1": "SG", + "entity2": 2, + "position2": 361, + "atom2": "SG" + }, + { + "entity1": 2, + "position1": 379, + "atom1": "SG", + "entity2": 2, + "position2": 432, + "atom2": "SG" + }, + { + "entity1": 2, + "position1": 480, + "atom1": "SG", + "entity2": 2, + "position2": 488, + "atom2": "SG" + }, + { + "entity1": 2, + "position1": 617, + "atom1": "SG", + "entity2": 2, + "position2": 649, + "atom2": "SG" + }, + { + "entity1": 2, + "position1": 662, + "atom1": "SG", + "entity2": 2, + "position2": 671, + "atom2": "SG" + }, + { + "entity1": 2, + "position1": 738, + "atom1": "SG", + "entity2": 2, + "position2": 760, + "atom2": "SG" + }, + { + "entity1": 2, + "position1": 743, + "atom1": "SG", + "entity2": 2, + "position2": 749, + "atom2": "SG" + }, + { + "entity1": 2, + "position1": 1032, + "atom1": "SG", + "entity2": 2, + "position2": 1043, + "atom2": "SG" + }, + { + "entity1": 2, + "position1": 1082, + "atom1": "SG", + "entity2": 2, + "position2": 1126, + "atom2": "SG" + }, + { + "entity1": 2, + "position1": 538, + "atom1": "SG", + "copy1": 1, + "entity2": 2, + "position2": 590, + "atom2": "SG", + "copy2": 1 + } + ], + "name": "8xki_D__C" + } +] \ No newline at end of file diff --git a/protenix_json/8xse_H_L_A.json b/protenix_json/8xse_H_L_A.json new file mode 100644 index 0000000000000000000000000000000000000000..76c7f5a01d1562d4a500e3da28b1aa3ac4c55394 --- /dev/null +++ b/protenix_json/8xse_H_L_A.json @@ -0,0 +1,112 @@ +[ + { + "sequences": [ + { + "proteinChain": { + "sequence": "RVQPTESIVRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCGP", + "count": 1, + "label_entity_id": "1", + "label_asym_id": [ + "A" + ], + "auth_asym_id": [ + "A" + ] + } + }, + { + "proteinChain": { + "sequence": "QVQLVESGGGLVQPGGSLRLSCAASGFTFSSYAMSWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCAKDHLITMVQPEYFHHWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPKSC", + "count": 1, + "label_entity_id": "2", + "label_asym_id": [ + "B" + ], + "auth_asym_id": [ + "H" + ] + } + }, + { + "proteinChain": { + "sequence": "DIQMTQSPSSVSASVGDSVTITCRASQGISRWLAWYQQRPGKAPKLLIYAAGNLETGVPSRFSGSGSGTDFTLTISDLQAEDFATYYCQQADSFPLTFGGGTKVDIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGECS", + "count": 1, + "label_entity_id": "3", + "label_asym_id": [ + "C" + ], + "auth_asym_id": [ + "L" + ] + } + } + ], + "covalent_bonds": [ + { + "entity1": 1, + "position1": 18, + "atom1": "SG", + "entity2": 1, + "position2": 43, + "atom2": "SG" + }, + { + "entity1": 1, + "position1": 61, + "atom1": "SG", + "entity2": 1, + "position2": 114, + "atom2": "SG" + }, + { + "entity1": 1, + "position1": 73, + "atom1": "SG", + "entity2": 1, + "position2": 207, + "atom2": "SG" + }, + { + "entity1": 1, + "position1": 162, + "atom1": "SG", + "entity2": 1, + "position2": 170, + "atom2": "SG" + }, + { + "entity1": 2, + "position1": 22, + "atom1": "SG", + "entity2": 2, + "position2": 96, + "atom2": "SG" + }, + { + "entity1": 2, + "position1": 150, + "atom1": "SG", + "entity2": 2, + "position2": 206, + "atom2": "SG" + }, + { + "entity1": 3, + "position1": 23, + "atom1": "SG", + "entity2": 3, + "position2": 88, + "atom2": "SG" + }, + { + "entity1": 3, + "position1": 134, + "atom1": "SG", + "entity2": 3, + "position2": 194, + "atom2": "SG" + } + ], + "name": "8xse_H_L_A" + } +] \ No newline at end of file diff --git a/protenix_json/8xsf_H_L_B.json b/protenix_json/8xsf_H_L_B.json new file mode 100644 index 0000000000000000000000000000000000000000..b91225a11a4bb060e229fce7afee2ef633633c53 --- /dev/null +++ b/protenix_json/8xsf_H_L_B.json @@ -0,0 +1,112 @@ +[ + { + "sequences": [ + { + "proteinChain": { + "sequence": "RVQPTESIVRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCGP", + "count": 1, + "label_entity_id": "2", + "label_asym_id": [ + "B" + ], + "auth_asym_id": [ + "B" + ] + } + }, + { + "proteinChain": { + "sequence": "QVQLQESGGGVVQPGRSLRLSCAASGFTFSRYGMHWVRQAPGKGLEWVAVIWYDGSNKYYADSVKGRFTISRDNSKNTLYLQMNSLRADDTAVYYCAKQEGTYCSGGSCYSGLDYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPKSCDKTHTCPPCPAPELLGGPSVFLFPPKPKGHLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPAPIEKTISKAKGQPREPQVYTLPPSRDELTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEALHNHYTQKSLSLSPGK", + "count": 1, + "label_entity_id": "3", + "label_asym_id": [ + "C" + ], + "auth_asym_id": [ + "H" + ] + } + }, + { + "proteinChain": { + "sequence": "DIQMTQSPSSLSASVGDRVTITCRASQSISSYLNWYQQKPGKAPKLLIYAASSLQSGVPSRFSGSGSGTDFTLTISSLQPEDFATYYCQQSYSTPLTFGGGIKVDIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGECS", + "count": 1, + "label_entity_id": "4", + "label_asym_id": [ + "D" + ], + "auth_asym_id": [ + "L" + ] + } + } + ], + "covalent_bonds": [ + { + "entity1": 1, + "position1": 61, + "atom1": "SG", + "entity2": 1, + "position2": 114, + "atom2": "SG" + }, + { + "entity1": 1, + "position1": 73, + "atom1": "SG", + "entity2": 1, + "position2": 207, + "atom2": "SG" + }, + { + "entity1": 1, + "position1": 162, + "atom1": "SG", + "entity2": 1, + "position2": 170, + "atom2": "SG" + }, + { + "entity1": 2, + "position1": 22, + "atom1": "SG", + "entity2": 2, + "position2": 96, + "atom2": "SG" + }, + { + "entity1": 2, + "position1": 104, + "atom1": "SG", + "entity2": 2, + "position2": 109, + "atom2": "SG" + }, + { + "entity1": 2, + "position1": 153, + "atom1": "SG", + "entity2": 2, + "position2": 209, + "atom2": "SG" + }, + { + "entity1": 3, + "position1": 23, + "atom1": "SG", + "entity2": 3, + "position2": 88, + "atom2": "SG" + }, + { + "entity1": 3, + "position1": 134, + "atom1": "SG", + "entity2": 3, + "position2": 194, + "atom2": "SG" + } + ], + "name": "8xsf_H_L_B" + } +] \ No newline at end of file diff --git a/protenix_json/8y4c_H_L_A.json b/protenix_json/8y4c_H_L_A.json new file mode 100644 index 0000000000000000000000000000000000000000..cbcd5c9e97d38714098a28380ea9010b66914245 --- /dev/null +++ b/protenix_json/8y4c_H_L_A.json @@ -0,0 +1,168 @@ +[ + { + "sequences": [ + { + "proteinChain": { + "sequence": "MFVFLVLLPLVSSQCVMPLFNLITTTQSYTNSFTRGVYYPDKVFRSSVLHLTQDLFLPFFSNVTWFHAISGTNGTKRFDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSKTQSLLIVNNATNVFIKVCEFQFCNDPFLDVYHKNNKSWMESESGVYSSANNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPIIGRDFPQGFSALEPLVDLPIGINITRFQTLLALNRSYLTPGDSSSGWTAGAADYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTESIVRFPNVTNLCPFHEVFNATRFASVYAWNRTRISNCVADYSVLYNFAPFFAFKCYGVSPTKLNDLCFTNVYADSFVIKGNEVSQIAPGQTGNIADYNYKLPDDFTGCVIAWNSNKLDSKHSGNYDYWYRLFRKSKLKPFERDISTEIYQAGNKPCKGKGPNCYFPLQSYGFRPTYGVGHQPYRVVVLSFELLHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTKSNKKFLPFQQFGRDIVDTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQGVNCTEVSVAIHADQLTPTWRVYSTGSNVFQTRAGCLIGAEYVNNSYECDIPIGAGICASYQTQTKSRRAAASVASQSIIAYTMSLGAENSVAYSNNSIAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLKRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKYFGGFNFSQILPDPSKPSKRSPIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGPALQIPFPMQMAYRFNGIGVTQNVLYENQKLIANQFNSAIGKIQDSLFSTPSALGKLQDVVNHNAQALNTLVKQLSSKFGAISSVLNDILSRLDPPEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQIITTDNTFVSGNCDVVIGIVNNTVYDPLQLELDSFKEELDKYFKNHTSPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQ", + "count": 1, + "label_entity_id": "1", + "label_asym_id": [ + "A" + ], + "auth_asym_id": [ + "A" + ] + } + }, + { + "proteinChain": { + "sequence": "QLQLQESGPGLVKPSETLSLTCTVSNGSISSSTFYWGWVRQPPGRGLEWIGSIYYSGSTYQNPSLKSRAIISVDTSKNQLSLKLTSVTAADTAVYYCARHWDVVVLAAARSWFDTWGQGTLVTVSS", + "count": 1, + "label_entity_id": "2", + "label_asym_id": [ + "B" + ], + "auth_asym_id": [ + "H" + ] + } + }, + { + "proteinChain": { + "sequence": "QSVLTQPPSVSGAPGQRVTISCTGSSPNIGARNDVHWYQQLPGAAPKLLIYGNSNRPSGVPDRFSGSKSGTSASLAITGLQAEDEAEYYCQSYDSSLSGWVFGGGTKLTVL", + "count": 1, + "label_entity_id": "3", + "label_asym_id": [ + "C" + ], + "auth_asym_id": [ + "L" + ] + } + } + ], + "covalent_bonds": [ + { + "entity1": 1, + "position1": 130, + "atom1": "SG", + "entity2": 1, + "position2": 164, + "atom2": "SG" + }, + { + "entity1": 1, + "position1": 288, + "atom1": "SG", + "entity2": 1, + "position2": 298, + "atom2": "SG" + }, + { + "entity1": 1, + "position1": 333, + "atom1": "SG", + "entity2": 1, + "position2": 358, + "atom2": "SG" + }, + { + "entity1": 1, + "position1": 376, + "atom1": "SG", + "entity2": 1, + "position2": 429, + "atom2": "SG" + }, + { + "entity1": 1, + "position1": 388, + "atom1": "SG", + "entity2": 1, + "position2": 521, + "atom2": "SG" + }, + { + "entity1": 1, + "position1": 477, + "atom1": "SG", + "entity2": 1, + "position2": 484, + "atom2": "SG" + }, + { + "entity1": 1, + "position1": 613, + "atom1": "SG", + "entity2": 1, + "position2": 645, + "atom2": "SG" + }, + { + "entity1": 1, + "position1": 658, + "atom1": "SG", + "entity2": 1, + "position2": 667, + "atom2": "SG" + }, + { + "entity1": 1, + "position1": 734, + "atom1": "SG", + "entity2": 1, + "position2": 756, + "atom2": "SG" + }, + { + "entity1": 1, + "position1": 739, + "atom1": "SG", + "entity2": 1, + "position2": 745, + "atom2": "SG" + }, + { + "entity1": 1, + "position1": 836, + "atom1": "SG", + "entity2": 1, + "position2": 847, + "atom2": "SG" + }, + { + "entity1": 1, + "position1": 1028, + "atom1": "SG", + "entity2": 1, + "position2": 1039, + "atom2": "SG" + }, + { + "entity1": 1, + "position1": 1078, + "atom1": "SG", + "entity2": 1, + "position2": 1122, + "atom2": "SG" + }, + { + "entity1": 2, + "position1": 22, + "atom1": "SG", + "entity2": 2, + "position2": 97, + "atom2": "SG" + }, + { + "entity1": 3, + "position1": 22, + "atom1": "SG", + "entity2": 3, + "position2": 90, + "atom2": "SG" + } + ], + "name": "8y4c_H_L_A" + } +] \ No newline at end of file diff --git a/protenix_json/8yj8_D__B.json b/protenix_json/8yj8_D__B.json new file mode 100644 index 0000000000000000000000000000000000000000..dbc077355a30f26fa9daca00724ccaca9fcaa06f --- /dev/null +++ b/protenix_json/8yj8_D__B.json @@ -0,0 +1,51 @@ +[ + { + "sequences": [ + { + "proteinChain": { + "sequence": "SDKLKVVATNSIIADMTKAIAGDKIDLHSIVPIGQDPHEYEPLPEDVEKTSNADVIFYNGINLEDGGQAWFTKLVKNAQKTKNKDYFAVSDGIDVIYLEGASEKGKEDPHAWLNLENGIIYSKNIAKQLIAKDPKNKETYEKNLKAYVAKLEKLDKEAKSKFDAIAENKKLIVTSEGCFKYFSKAYGVPSAYIWEINTEEEGTPDQISSLIEKLKVIKPSALFVESSVDRRPMETVSKDSGIPIYSEIFTDSIAKKGKPGDSYYAMMKWNLDKISEGLAK", + "count": 1, + "label_entity_id": "1", + "label_asym_id": [ + "B" + ], + "auth_asym_id": [ + "B" + ] + } + }, + { + "proteinChain": { + "sequence": "EVQLVESGGGLVQPGGSLRLSCAASGFTLDNYAIGWFRQAPGKEREGVSCIGLSAVTTYDTDSVKGRFTISRDSARNTVYLQMNSLRPEDTAVYFCAAFPYSDYCPDSDDFLQHRGHGTQVTVSSAAGHHHHHH", + "count": 1, + "label_entity_id": "2", + "label_asym_id": [ + "D" + ], + "auth_asym_id": [ + "D" + ] + } + } + ], + "covalent_bonds": [ + { + "entity1": 2, + "position1": 22, + "atom1": "SG", + "entity2": 2, + "position2": 96, + "atom2": "SG" + }, + { + "entity1": 2, + "position1": 50, + "atom1": "SG", + "entity2": 2, + "position2": 105, + "atom2": "SG" + } + ], + "name": "8yj8_D__B" + } +] \ No newline at end of file diff --git a/protenix_json/8ysf_C__B.json b/protenix_json/8ysf_C__B.json new file mode 100644 index 0000000000000000000000000000000000000000..9eb16535cca70dc94b02c8c26281e9635796e4ad --- /dev/null +++ b/protenix_json/8ysf_C__B.json @@ -0,0 +1,75 @@ +[ + { + "sequences": [ + { + "proteinChain": { + "sequence": "VECDFSPLLSGTPPQVYNFKRLVFTNCNYNLTKLLSLFSVNDFTCSQISPAAIASNCYSSLILDYFSYPLSMKSDLSVSSAGPISQFNYKQSFSNPTCLILATVPHNLTTITKPLKYSYINKCSRLLSDDRTEVPQLVNANQYSPCVSIVPSTVWEDGDYYRKQLSPLEGGGWLVASGSTVAMTEQLQMGFGITVQYGTDTNSVCPKLEHHH", + "count": 1, + "label_entity_id": "1", + "label_asym_id": [ + "A" + ], + "auth_asym_id": [ + "B" + ] + } + }, + { + "proteinChain": { + "sequence": "QVQLVESGGGLVQPGGSLRVSCTASKSITGIYLMGWYRQAPGKQRELVALITGDGSNTRYEDSAKGRFTISRDNAKNTVHLQMNNLKPEDTAVYYCYVQIDLNYYWGQGTQVTVSSLE", + "count": 1, + "label_entity_id": "2", + "label_asym_id": [ + "B" + ], + "auth_asym_id": [ + "C" + ] + } + } + ], + "covalent_bonds": [ + { + "entity1": 1, + "position1": 3, + "atom1": "SG", + "entity2": 1, + "position2": 27, + "atom2": "SG" + }, + { + "entity1": 1, + "position1": 45, + "atom1": "SG", + "entity2": 1, + "position2": 98, + "atom2": "SG" + }, + { + "entity1": 1, + "position1": 57, + "atom1": "SG", + "entity2": 1, + "position2": 205, + "atom2": "SG" + }, + { + "entity1": 1, + "position1": 123, + "atom1": "SG", + "entity2": 1, + "position2": 146, + "atom2": "SG" + }, + { + "entity1": 2, + "position1": 22, + "atom1": "SG", + "entity2": 2, + "position2": 96, + "atom2": "SG" + } + ], + "name": "8ysf_C__B" + } +] \ No newline at end of file diff --git a/protenix_json/8ywq_H_L_A.json b/protenix_json/8ywq_H_L_A.json new file mode 100644 index 0000000000000000000000000000000000000000..e52d7186ee37f77e611c6e1d321585f28e96e86b --- /dev/null +++ b/protenix_json/8ywq_H_L_A.json @@ -0,0 +1,88 @@ +[ + { + "sequences": [ + { + "proteinChain": { + "sequence": "QITLKESGPALVKPTQTLTLTCTFSGFSLSTSGMGVGWIRQPPGKALEWLAHIWWDDDKYYNPSLKSRLTISKDTSKNQVVLTMTNMDPVDTATYYCARRANYGTSYDYGMDYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCDKTH", + "count": 1, + "label_entity_id": "1", + "label_asym_id": [ + "A" + ], + "auth_asym_id": [ + "H" + ] + } + }, + { + "proteinChain": { + "sequence": "DVVMTQSPSSLSASVGDRVTITCKASQSVSDVLTWYQQKPGKAPKLLIYYASNRYTGVPSRFSGSGSGTDFTLTISSLQPEDFATYYCQQGYRSPYTFGGGTKLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC", + "count": 1, + "label_entity_id": "2", + "label_asym_id": [ + "B" + ], + "auth_asym_id": [ + "L" + ] + } + }, + { + "proteinChain": { + "sequence": "APVPPGEDSKDVAAPHRQPLTSSERIDKQIRYILDGISALRKETCNKSNMCESSKEALAENNLNLPKMAEKDGCFQSGFNEETCLVKIITGLLEFEVYLEYLQNRFESSEEQARAVQMSTKVLIQFLQKKAKNLDAITTPDPTTNASLLTKLQAQNQWLQDMTTHLILRSFKEFLQSSLRALRQM", + "count": 1, + "label_entity_id": "3", + "label_asym_id": [ + "C" + ], + "auth_asym_id": [ + "A" + ] + } + } + ], + "covalent_bonds": [ + { + "entity1": 1, + "position1": 22, + "atom1": "SG", + "entity2": 1, + "position2": 97, + "atom2": "SG" + }, + { + "entity1": 1, + "position1": 151, + "atom1": "SG", + "entity2": 1, + "position2": 207, + "atom2": "SG" + }, + { + "entity1": 2, + "position1": 23, + "atom1": "SG", + "entity2": 2, + "position2": 88, + "atom2": "SG" + }, + { + "entity1": 2, + "position1": 134, + "atom1": "SG", + "entity2": 2, + "position2": 194, + "atom2": "SG" + }, + { + "entity1": 3, + "position1": 74, + "atom1": "SG", + "entity2": 3, + "position2": 84, + "atom2": "SG" + } + ], + "name": "8ywq_H_L_A" + } +] \ No newline at end of file diff --git a/protenix_json/8yx9_H_L_A.json b/protenix_json/8yx9_H_L_A.json new file mode 100644 index 0000000000000000000000000000000000000000..195934250982a18348b1490bbafca5730c4269d7 --- /dev/null +++ b/protenix_json/8yx9_H_L_A.json @@ -0,0 +1,164 @@ +[ + { + "sequences": [ + { + "proteinChain": { + "sequence": "EVQLVESGGGLVQPGGSLRLSCAASGYSFTGYYIHWVRQAPGKGLEWVARVIPNAGGTSYNQKFKGRFTLSVDNSKNTAYLQMNSLRAEDTAVYYCAREGIYWWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCHHHHHH", + "count": 1, + "label_entity_id": "1", + "label_asym_id": [ + "A" + ], + "auth_asym_id": [ + "H" + ] + } + }, + { + "proteinChain": { + "sequence": "DIQMTQSPSSLSASVGDRVTITCRSSQSLVHSNGNTFLHWYQQKPGKAPKLLIYTVSNRFSGVPSRFSGSGSGTDFTLTISSLQPEDFATYFCSQTTHVPWTFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC", + "count": 1, + "label_entity_id": "2", + "label_asym_id": [ + "B" + ], + "auth_asym_id": [ + "L" + ] + } + }, + { + "proteinChain": { + "sequence": "EPPTACREKQYLINSQCCSLCQPGQKLVSDCTEFTETECLPCGESEFLDTWNRETHCHQHKYCDPNLGLRVQQKGTSETDTICTCEEGWHCTSEACESCVLHRSCSPGFGVKQIATGVSDTICEPCPVGFFSNVSSAFEKCHPWTSCETKDLVVQQAGTNKTDVVCGPQDRLRHHHHHH", + "count": 1, + "label_entity_id": "3", + "label_asym_id": [ + "I" + ], + "auth_asym_id": [ + "A" + ] + } + } + ], + "covalent_bonds": [ + { + "entity1": 1, + "position1": 22, + "atom1": "SG", + "copy1": 1, + "entity2": 1, + "position2": 96, + "atom2": "SG", + "copy2": 1 + }, + { + "entity1": 1, + "position1": 141, + "atom1": "SG", + "entity2": 1, + "position2": 197, + "atom2": "SG" + }, + { + "entity1": 2, + "position1": 23, + "atom1": "SG", + "entity2": 2, + "position2": 93, + "atom2": "SG" + }, + { + "entity1": 2, + "position1": 139, + "atom1": "SG", + "entity2": 2, + "position2": 199, + "atom2": "SG" + }, + { + "entity1": 3, + "position1": 6, + "atom1": "SG", + "entity2": 3, + "position2": 17, + "atom2": "SG" + }, + { + "entity1": 3, + "position1": 18, + "atom1": "SG", + "entity2": 3, + "position2": 31, + "atom2": "SG" + }, + { + "entity1": 3, + "position1": 21, + "atom1": "SG", + "entity2": 3, + "position2": 39, + "atom2": "SG" + }, + { + "entity1": 3, + "position1": 42, + "atom1": "SG", + "entity2": 3, + "position2": 57, + "atom2": "SG" + }, + { + "entity1": 3, + "position1": 63, + "atom1": "SG", + "copy1": 1, + "entity2": 3, + "position2": 83, + "atom2": "SG", + "copy2": 1 + }, + { + "entity1": 3, + "position1": 85, + "atom1": "SG", + "copy1": 1, + "entity2": 3, + "position2": 99, + "atom2": "SG", + "copy2": 1 + }, + { + "entity1": 3, + "position1": 91, + "atom1": "SG", + "copy1": 1, + "entity2": 3, + "position2": 96, + "atom2": "SG", + "copy2": 1 + }, + { + "entity1": 3, + "position1": 105, + "atom1": "SG", + "copy1": 1, + "entity2": 3, + "position2": 123, + "atom2": "SG", + "copy2": 1 + }, + { + "entity1": 3, + "position1": 126, + "atom1": "SG", + "copy1": 1, + "entity2": 3, + "position2": 141, + "atom2": "SG", + "copy2": 1 + } + ], + "name": "8yx9_H_L_A" + } +] \ No newline at end of file diff --git a/protenix_json/8zc1_E_C_B.json b/protenix_json/8zc1_E_C_B.json new file mode 100644 index 0000000000000000000000000000000000000000..4926f028d724ad898fc50ea1f8c8045354397597 --- /dev/null +++ b/protenix_json/8zc1_E_C_B.json @@ -0,0 +1,104 @@ +[ + { + "sequences": [ + { + "proteinChain": { + "sequence": "ITNLCPFDEVFNATRFASVYAWNRKRISNCVADYSVLYNFAPFFAFKCYGVSPTKLNDLCFTNVYADSFVIRGNEVSQIAPGQTGNIADYNYKLPDDFTGCVIAWNSNKLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGNKPCNGVAGFNCYFPLRSYGFRPTYGVGHQPYRVVVLSFELLHAPATVCGP", + "count": 1, + "label_entity_id": "1", + "label_asym_id": [ + "A" + ], + "auth_asym_id": [ + "B" + ] + } + }, + { + "proteinChain": { + "sequence": "QPVLTQPPSASGPPGQSVSISCSGSRSNIGTNFVYWYQQLPGAAPKLLIYKNDQRPSGVPERFFGSKSGTSASLAISGLRSEDEVDYYCAAWDDSLSGHVFGAGTKVTVLGTKLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECS", + "count": 1, + "label_entity_id": "2", + "label_asym_id": [ + "B" + ], + "auth_asym_id": [ + "C" + ] + } + }, + { + "proteinChain": { + "sequence": "EVQLVQSGAEVKKPGASVKVSCKASGYIFSDYNIHWVRQAPGQGLEWMGWISPDSDDTNYAQSFQGRVTMTRDTSITTVYMELSSLRSDDTAVYFCARSVGYCSLNSCQRWMWFDTWGQGALVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSC", + "count": 1, + "label_entity_id": "3", + "label_asym_id": [ + "C" + ], + "auth_asym_id": [ + "E" + ] + } + } + ], + "covalent_bonds": [ + { + "entity1": 1, + "position1": 48, + "atom1": "SG", + "entity2": 1, + "position2": 101, + "atom2": "SG" + }, + { + "entity1": 1, + "position1": 149, + "atom1": "SG", + "entity2": 1, + "position2": 157, + "atom2": "SG" + }, + { + "entity1": 2, + "position1": 22, + "atom1": "SG", + "entity2": 2, + "position2": 89, + "atom2": "SG" + }, + { + "entity1": 2, + "position1": 145, + "atom1": "SG", + "entity2": 2, + "position2": 204, + "atom2": "SG" + }, + { + "entity1": 3, + "position1": 22, + "atom1": "SG", + "entity2": 3, + "position2": 96, + "atom2": "SG" + }, + { + "entity1": 3, + "position1": 103, + "atom1": "SG", + "entity2": 3, + "position2": 108, + "atom2": "SG" + }, + { + "entity1": 3, + "position1": 154, + "atom1": "SG", + "entity2": 3, + "position2": 210, + "atom2": "SG" + } + ], + "name": "8zc1_E_C_B" + } +] \ No newline at end of file diff --git a/protenix_json/8zc4_H_G_A.json b/protenix_json/8zc4_H_G_A.json new file mode 100644 index 0000000000000000000000000000000000000000..d61724c0daf92d3745f3e6d539326a8c50b628c9 --- /dev/null +++ b/protenix_json/8zc4_H_G_A.json @@ -0,0 +1,184 @@ +[ + { + "sequences": [ + { + "proteinChain": { + "sequence": "QCVNLITRTQSYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAISGTNGTKRFDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSKTQSLLIVNNATNVVIKVCEFQFCNDPFLDVYYHKNNKSWMESEFRVYSSANNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLGRDLPQGFSALEPLVDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTESIVRFPNITNLCPFDEVFNATRFASVYAWNRKRISNCVADYSVLYNFAPFFAFKCYGVSPTKLNDLCFTNVYADSFVIRGNEVSQIAPGQTGNIADYNYKLPDDFTGCVIAWNSNKLDSKVGGNYNYRYRLFRKSNLKPFERDISTEIYQAGNKPCNGVAGVNCYFPLQSYGFRPTYGVGHQPYRVVVLSFELLHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQGVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIGAEYVNNSYECDIPIGAGICASYQTQTKSRSVASQSIIAYTMSLGAENSVAYSNNSIAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLKRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKYFGGFNFSQILPDPSKPSKRSPIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGPALQIPFPMQMAYRFNGIGVTQNVLYENQKLIANQFNSAIGKIQDSLSSTPSALGKLQDVVNHNAQALNTLVKQLSSKFGAISSVLNDILSRLDPPEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQIITTDNTFVSGNCDVVIGIVNNTVYDPLQPELDSFKEELDKYFKNHTSPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKGSGRENLYFQGGGGSGYIPEAPRDGQAYVRKDGEWVLLSTFLGHHHHHH", + "count": 1, + "label_entity_id": "1", + "label_asym_id": [ + "A" + ], + "auth_asym_id": [ + "A" + ] + } + }, + { + "proteinChain": { + "sequence": "QPVLTQPPSASGPPGQSVSISCSGSRSNIGTNFVYWYQQLPGAAPKLLIYKNDQRPSGVPERFFGSKSGTSASLAISGLRSEDEVDYYCAAWDDSLSGHVFGAGTKVTVLGTKLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECS", + "count": 1, + "label_entity_id": "2", + "label_asym_id": [ + "D" + ], + "auth_asym_id": [ + "G" + ] + } + }, + { + "proteinChain": { + "sequence": "EVQLVQSGAEVKKPGASVKVSCKASGYIFSDYNIHWVRQAPGQGLEWMGWISPDSDDTNYAQSFQGRVTMTRDTSITTVYMELSSLRSDDTAVYFCARSVGYCSLNSCQRWMWFDTWGQGALVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSC", + "count": 1, + "label_entity_id": "3", + "label_asym_id": [ + "E" + ], + "auth_asym_id": [ + "H" + ] + } + } + ], + "covalent_bonds": [ + { + "entity1": 1, + "position1": 273, + "atom1": "SG", + "entity2": 1, + "position2": 283, + "atom2": "SG" + }, + { + "entity1": 1, + "position1": 318, + "atom1": "SG", + "entity2": 1, + "position2": 343, + "atom2": "SG" + }, + { + "entity1": 1, + "position1": 361, + "atom1": "SG", + "entity2": 1, + "position2": 414, + "atom2": "SG" + }, + { + "entity1": 1, + "position1": 373, + "atom1": "SG", + "entity2": 1, + "position2": 507, + "atom2": "SG" + }, + { + "entity1": 1, + "position1": 462, + "atom1": "SG", + "entity2": 1, + "position2": 470, + "atom2": "SG" + }, + { + "entity1": 1, + "position1": 520, + "atom1": "SG", + "entity2": 1, + "position2": 572, + "atom2": "SG" + }, + { + "entity1": 1, + "position1": 599, + "atom1": "SG", + "entity2": 1, + "position2": 631, + "atom2": "SG" + }, + { + "entity1": 1, + "position1": 644, + "atom1": "SG", + "entity2": 1, + "position2": 653, + "atom2": "SG" + }, + { + "entity1": 1, + "position1": 716, + "atom1": "SG", + "entity2": 1, + "position2": 738, + "atom2": "SG" + }, + { + "entity1": 1, + "position1": 721, + "atom1": "SG", + "entity2": 1, + "position2": 727, + "atom2": "SG" + }, + { + "entity1": 1, + "position1": 1010, + "atom1": "SG", + "entity2": 1, + "position2": 1021, + "atom2": "SG" + }, + { + "entity1": 1, + "position1": 1060, + "atom1": "SG", + "entity2": 1, + "position2": 1104, + "atom2": "SG" + }, + { + "entity1": 2, + "position1": 22, + "atom1": "SG", + "entity2": 2, + "position2": 89, + "atom2": "SG" + }, + { + "entity1": 2, + "position1": 145, + "atom1": "SG", + "entity2": 2, + "position2": 204, + "atom2": "SG" + }, + { + "entity1": 3, + "position1": 22, + "atom1": "SG", + "entity2": 3, + "position2": 96, + "atom2": "SG" + }, + { + "entity1": 3, + "position1": 103, + "atom1": "SG", + "entity2": 3, + "position2": 108, + "atom2": "SG" + }, + { + "entity1": 3, + "position1": 154, + "atom1": "SG", + "entity2": 3, + "position2": 210, + "atom2": "SG" + } + ], + "name": "8zc4_H_G_A" + } +] \ No newline at end of file diff --git a/protenix_json/8zhg_H_L_C.json b/protenix_json/8zhg_H_L_C.json new file mode 100644 index 0000000000000000000000000000000000000000..e252685470eef1efe2129d69482f2bc5e63e9591 --- /dev/null +++ b/protenix_json/8zhg_H_L_C.json @@ -0,0 +1,96 @@ +[ + { + "sequences": [ + { + "proteinChain": { + "sequence": "VSSQCVNLTTRTQLPPAYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIHVSGTNGTKRFDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSKTQSLLIVNNATNVVIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSANNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLVRDLPQGFSALEPLVDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTESIVRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTQTNSPGSASSVASQSIIAYTMSLGAENSVAYSNNSIAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKPSKRSPIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGPALQIPFPMQMAYRFNGIGVTQNVLYENQKLIANQFNSAIGKIQDSLSSTPSALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDPPEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQIITTDNTFVSGNCDVVIGIVNNTVYDPLQPELDSFKEELDKYFKNHTSPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQGSGYIPEAPRDGQAYVRKDGEWVLLSTFLGRSLEVLFQGPGHHHHHHHHSAWSHPQFEKGGGSGGGGSGGSAWSHPQFEK", + "count": 1, + "label_entity_id": "1", + "label_asym_id": [ + "A" + ], + "auth_asym_id": [ + "C" + ] + } + }, + { + "proteinChain": { + "sequence": "MGWSLILLFLVAVATRVLSEVQLVESGGGLVQPGGSLRLSCAASGFTFSSYWMSWVRQAPGKGLEWVANIKQDGSEKYYVDSVKGRFTISRDNAKNSLYLQMNSLRAEDTAVYYCARGQLGPWVGVDYWGQGTLVTVSS", + "count": 1, + "label_entity_id": "2", + "label_asym_id": [ + "B" + ], + "auth_asym_id": [ + "H" + ] + } + }, + { + "proteinChain": { + "sequence": "MGWSCIILFLVATATGVNFMLTQPHSVSESPGKTVTISCTGSSGSIASNYVQWYQQRPGSAPTTVIYEDNQRPSGVPDRFSGSIDSSSNSASLTISGLKTEDEADYYCQSYDSSNWVFGGGTQLTV", + "count": 1, + "label_entity_id": "3", + "label_asym_id": [ + "C" + ], + "auth_asym_id": [ + "L" + ] + } + } + ], + "covalent_bonds": [ + { + "entity1": 1, + "position1": 326, + "atom1": "SG", + "entity2": 1, + "position2": 351, + "atom2": "SG" + }, + { + "entity1": 1, + "position1": 369, + "atom1": "SG", + "entity2": 1, + "position2": 422, + "atom2": "SG" + }, + { + "entity1": 1, + "position1": 381, + "atom1": "SG", + "entity2": 1, + "position2": 515, + "atom2": "SG" + }, + { + "entity1": 1, + "position1": 470, + "atom1": "SG", + "entity2": 1, + "position2": 478, + "atom2": "SG" + }, + { + "entity1": 2, + "position1": 41, + "atom1": "SG", + "entity2": 2, + "position2": 115, + "atom2": "SG" + }, + { + "entity1": 3, + "position1": 39, + "atom1": "SG", + "entity2": 3, + "position2": 108, + "atom2": "SG" + } + ], + "name": "8zhg_H_L_C" + } +] \ No newline at end of file diff --git a/protenix_json/9b9y_N__R.json b/protenix_json/9b9y_N__R.json new file mode 100644 index 0000000000000000000000000000000000000000..f52411bf970166d66ae33a7b88a2e8c894d4bd02 --- /dev/null +++ b/protenix_json/9b9y_N__R.json @@ -0,0 +1,51 @@ +[ + { + "sequences": [ + { + "proteinChain": { + "sequence": "DYKDDDDAMDQVNITEFYNKSLSSFENLYFQGGIQCGENFMDIECFMVLNPSQQLAIAVLSLTLGTFTVLENLLVLCVILHSRSLRCRPSYHFIGSLAVADLLGSVIFVYSFIDFHVFHRKDSRNVFLFKLGGVTASFTAKVGSLFLAAIDRYISIHRPLAYKRIVTRPKAVVAFCLMWTIAIVIAVLPLLGWNCEKLQSVCSDIFPHIDKTYLMFWIGVVSVLLLFIVYAYMYILWKAGIDCSFWNESYLTGSRDERKKSLLSKFGMDEGVTFMFIGRFDRGQKGVDVLLKAIEILSSKKEFQEMRFIIIGKGDPELEGWARSLEEKHGNVKVITEMLSREFVRELYGSVDFVIIPSYFEPFGLVALEAMCLGAIPIASAVGGLRDIITNETGILVKAGDPGELANAILKALELSRSDLSKFRENCKKRAMSFSDQARMDIELAKTLVLILVVLIICWGPLLAIMVYDVFGKMNKLIKTVFAFCSMLCLLNSTVNPIIYALRSKDLRHAFRSMFPSCENLYFQGHHHHHHHHHH", + "count": 1, + "label_entity_id": "1", + "label_asym_id": [ + "A" + ], + "auth_asym_id": [ + "R" + ] + } + }, + { + "proteinChain": { + "sequence": "QVQLQESGGGLVQAGGSLRLSCAASGTIFGPDVMGWYRQAPGKERELVAGISNGANTYYADSVKGRFTISRDNAKNTVYLQMNSLKPEDTAVYYCAAEVLDYTFAYLYHAYWGQGTQVTVSSHHHHHH", + "count": 1, + "label_entity_id": "2", + "label_asym_id": [ + "B" + ], + "auth_asym_id": [ + "N" + ] + } + } + ], + "covalent_bonds": [ + { + "entity1": 1, + "position1": 195, + "atom1": "SG", + "entity2": 1, + "position2": 202, + "atom2": "SG" + }, + { + "entity1": 2, + "position1": 22, + "atom1": "SG", + "entity2": 2, + "position2": 95, + "atom2": "SG" + } + ], + "name": "9b9y_N__R" + } +] \ No newline at end of file diff --git a/protenix_json/9clp_H_L_A.json b/protenix_json/9clp_H_L_A.json new file mode 100644 index 0000000000000000000000000000000000000000..a23025a8cfdbb764037e2719c2f99a83e3605d17 --- /dev/null +++ b/protenix_json/9clp_H_L_A.json @@ -0,0 +1,200 @@ +[ + { + "sequences": [ + { + "proteinChain": { + "sequence": "VPPHERKFEKKFIELVVVVDHSMVTKYNNDSTAIRTWIYEMLNTVNEIYLPFNIRVALVGLEFWCNGDLINVTSTADDTLHSFGEWRASDLLNRKRHDHAQLLTNVTLDHSTLGITFVYGMCKSDRSVELILDYSNITFNMAYIIAHEMGHSLGMLHDTKFCTCGAKPCIMFGKESIPPPKEFSSCSYDQYNKYLLKYNPKCILDPPLRKDIASPAVCGNEIWEEGEECDCGSPADCRNPCCDAATCKLKPGAECGNGECCDKCKIRKAGTECRPARDDCDVAEHCTGQSAECPRNEFQRNGQPCLNNSGYCYNGDCPIMLNQCIALFSPSATVAQDSCFQRNLQGSYYGYCTKEIGYYGKRFPCAPQDVKCGRLYCLDNSFKKNMRCKNDYSYADENKGIVEPGTKCEDGKVCINRKCVDVNTAY", + "count": 1, + "label_entity_id": "1", + "label_asym_id": [ + "A" + ], + "auth_asym_id": [ + "A" + ] + } + }, + { + "proteinChain": { + "sequence": "QVQLVQSGAEVKKPGASVKVSCKASGYTFTGYYMHWVRQAPGQGLEWMGWINPNSGGTNYAQKFQGRVTMTRDTSISTAYMELSRLRSDDTAVYYCAREWDDDDFSFDYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKK", + "count": 1, + "label_entity_id": "3", + "label_asym_id": [ + "C" + ], + "auth_asym_id": [ + "H" + ] + } + }, + { + "proteinChain": { + "sequence": "QSALTQPASVSGSPGQSITISCTGTSSDVGGYNYVSWYQQHPGKAPKLMIYEVSNRPSGVSNRFSGSKSGNTASLTISGLQAEDEADYYCSSYTSSSTLVVFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHKSYSCQVTHEGSTVEKTVAPTECS", + "count": 1, + "label_entity_id": "4", + "label_asym_id": [ + "D" + ], + "auth_asym_id": [ + "L" + ] + } + } + ], + "covalent_bonds": [ + { + "entity1": 1, + "position1": 122, + "atom1": "SG", + "entity2": 1, + "position2": 202, + "atom2": "SG" + }, + { + "entity1": 1, 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+ }, + { + "entity1": 1, + "position1": 280, + "atom1": "SG", + "entity2": 1, + "position2": 312, + "atom2": "SG" + }, + { + "entity1": 1, + "position1": 305, + "atom1": "SG", + "entity2": 1, + "position2": 317, + "atom2": "SG" + }, + { + "entity1": 1, + "position1": 324, + "atom1": "SG", + "entity2": 1, + "position2": 377, + "atom2": "SG" + }, + { + "entity1": 1, + "position1": 339, + "atom1": "SG", + "entity2": 1, + "position2": 388, + "atom2": "SG" + }, + { + "entity1": 1, + "position1": 352, + "atom1": "SG", + "entity2": 1, + "position2": 365, + "atom2": "SG" + }, + { + "entity1": 1, + "position1": 372, + "atom1": "SG", + "entity2": 1, + "position2": 414, + "atom2": "SG" + }, + { + "entity1": 1, + "position1": 408, + "atom1": "SG", + "entity2": 1, + "position2": 419, + "atom2": "SG" + }, + { + "entity1": 2, + "position1": 22, + "atom1": "SG", + "entity2": 2, + "position2": 96, + "atom2": "SG" + }, + { + "entity1": 3, + "position1": 22, + "atom1": "SG", + "entity2": 3, + "position2": 90, + "atom2": "SG" + } + ], + "name": "9clp_H_L_A" + } +] \ No newline at end of file diff --git a/protenix_json/9dez_H_L_B.json b/protenix_json/9dez_H_L_B.json new file mode 100644 index 0000000000000000000000000000000000000000..56d90032b721bac586913fddcb67ccbf352485d2 --- /dev/null +++ b/protenix_json/9dez_H_L_B.json @@ -0,0 +1,168 @@ +[ + { + "sequences": [ + { + "proteinChain": { + "sequence": "MQRALLIMTLLCLVRAKFADDLLDLLTFPGAHRFLHKLTSNSSSLYSRANNFDVGVLPGYPTKNVNLFSPLTNSTLPINGLHRSYQPLMLNCLTKITNHTLSMYLLPSEIQTYSCGGAMVKYQTHDAVRIILDLTVTDHISVEVVGQHGENYVFVCSEQFNYTTALHNSTFFSLNSELYCFTNNTYLGILPPDLTDFTVYRTGQFYANGYLLGTLPITVNYVRLYRGHLSANSAHFALANLTDTLITLTNTTISQITYCDKSVVDSIACQRSSHEVEDGFYSDPKSAVRARQRTIVTLPKLPELEVVQLNISAHMDFGEARLDSVTINGNTSYCVTKPYFRLETNFMCTGCTINLRTDTCSFDLSAVNNGMSFSQFCLSTESGACEMKIVVTYVWKYLLRQRLYVTAVEGQTHTGTTSVHAIDTSSVITDVCTDYTIYGVSGTGIIKPSDLLLHNGIAFTSPTGELYAFKNITTGKTLQVLPCETPSQLIVINNTVVGAITSSNSTENNRFTTTIVTPTFFYSTNATTFNCTKPVLSYGPISVCSDGAIVGTSTLQNTRPSIVSLYDGEVEIPSAFSLSVQTEYLQVQAEQVIVDCPQYVCNGNSRCLQLLAQYTSACSNIEAALHSSAQLDSREIINMFQTSTQSLQLANITNFKGDYNFSSILTTRLGGRSAIEDLLFNKVVTSGLGTVDQDYKACSRDMAIADLVCSQYYNGIMVLPGVVDAEKMAMYTGSLTGAMVFGGLTAAAAIPFATAVQARLNYVALQTNVLQENQKILAESFNQAVGNISLALSSVNDAIQQTSEALNTVAIAIKKIQTVVNQQGEALSHLTAQLSNNFQAISTSIQDIYNRLEEVEANQQVDRLITGRLAALNAYVTQLLNQMSQIRQSRLLAQQKINECVKSQSSRYGFCGNGTHIFSLTQTAPNGIFFMHAVLVPNKFTRVNASAGICVDNTRGYSLQPQLILYQFNNSWRVTPRNMYEPRLPRQADFIQLTDCSVTFYNTTAANLPNIIPDIIDVNQTVSDIIDNLPTATPPQWDVGIYNNTILNLTVEINDLQERSKNLSQIADRLQNYIDNLNNTLVDLEWLNRVETYLKWPGSGYIPEAPRDGQAYVRKDGEWVLLSTFLGRSLEVLFQGPGSGGLNDIFEAQKIEWHEGSGHHHHHHHH", + "count": 1, + "label_entity_id": "1", + "label_asym_id": [ + "B" + ], + "auth_asym_id": [ + "B" + ] + } + }, + { + "proteinChain": { + "sequence": "HSQLQESGPGLVKPSQTLSLTCTVSGGSISSAGYYWNWIRQHPGKGLEWIGYIYYSGNTYYNPSLKSRVTISVDTSKSQFSLKLNSVTAADTAVYYCARKIVNWFDPWGQGTLVTVSS", + "count": 1, + "label_entity_id": "2", + "label_asym_id": [ + "D" + ], + "auth_asym_id": [ + "H" + ] + } + }, + { + "proteinChain": { + "sequence": "QSALTQPASVSGSPGQSITISCTGTSSDVGGYNYVSWYQQHPGKAPKLMIYDVSERPSGVSNRFSGSKSGNTASLTISGLQAEDEADYFCCSYAAYTTYVVFGGGTQLTVL", + "count": 1, + "label_entity_id": "3", + "label_asym_id": [ + "G" + ], + "auth_asym_id": [ + "L" + ] + } + } + ], + "covalent_bonds": [ + { + "entity1": 1, + "position1": 92, + "atom1": "SG", + "entity2": 1, + "position2": 115, + "atom2": "SG" + }, + { + "entity1": 1, + "position1": 156, + "atom1": "SG", + "entity2": 1, + "position2": 180, + "atom2": "SG" + }, + { + "entity1": 1, + "position1": 259, + "atom1": "SG", + "entity2": 1, + "position2": 269, + "atom2": "SG" + }, + { + "entity1": 1, + "position1": 334, + "atom1": "SG", + "entity2": 1, + "position2": 377, + "atom2": "SG" + }, + { + "entity1": 1, + "position1": 348, + "atom1": "SG", + "entity2": 1, + "position2": 351, + "atom2": "SG" + }, + { + "entity1": 1, + "position1": 360, + "atom1": "SG", + "entity2": 1, + "position2": 385, + "atom2": "SG" + }, + { + "entity1": 1, + "position1": 432, + "atom1": "SG", + "entity2": 1, + "position2": 483, + "atom2": "SG" + }, + { + "entity1": 1, + "position1": 531, + "atom1": "SG", + "entity2": 1, + "position2": 544, + "atom2": "SG" + }, + { + "entity1": 1, + "position1": 596, + "atom1": "SG", + "entity2": 1, + "position2": 618, + "atom2": "SG" + }, + { + "entity1": 1, + "position1": 601, + "atom1": "SG", + "entity2": 1, + "position2": 607, + "atom2": "SG" + }, + { + "entity1": 1, + "position1": 698, + "atom1": "SG", + "entity2": 1, + "position2": 709, + "atom2": "SG" + }, + { + "entity1": 1, + "position1": 900, + "atom1": "SG", + "entity2": 1, + "position2": 911, + "atom2": "SG" + }, + { + "entity1": 1, + "position1": 950, + "atom1": "SG", + "entity2": 1, + "position2": 996, + "atom2": "SG" + }, + { + "entity1": 2, + "position1": 22, + "atom1": "SG", + "entity2": 2, + "position2": 97, + "atom2": "SG" + }, + { + "entity1": 3, + "position1": 22, + "atom1": "SG", + "entity2": 3, + "position2": 90, + "atom2": "SG" + } + ], + "name": "9dez_H_L_B" + } +] \ No newline at end of file diff --git a/protenix_json/9df0_H_L_A.json b/protenix_json/9df0_H_L_A.json new file mode 100644 index 0000000000000000000000000000000000000000..9410353221f235d5e75458ed7e52d1c19c22ce44 --- /dev/null +++ b/protenix_json/9df0_H_L_A.json @@ -0,0 +1,88 @@ +[ + { + "sequences": [ + { + "proteinChain": { + "sequence": "MQRALLIMTLLCLVRAKFADDLLDLLTFPGAHRFLHKLTSNSSSLYSRANNFDVGVLPGYPTKNVNLFSPLTNSTLPINGLHRSYQPLMLNCLTKITNHTLSMYLLPSEIQTYSCGGAMVKYQTHDAVRIILDLTVTDHISVEVVGQHGENYVFVCSEQFNYTTALHNSTFFSLNSELYCFTNNTYLGILPPDLTDFTVYRTGQFYANGYLLGTLPITVNYVRLYRGHLSANSAHFALANLTDTLITLTNTTISQITYCDKSVVDSIACQRSSHEVEDGFYSDPKSAVRARQRTIVTLPKLPELEVVQLNISAHMDFGEARLDSVTINGNTSYCVTKPYFRLETNFMCTGCTINLRTDTCSFDLSAVNNGMSFSQFCLSTESGACEMKIVVTYVWKYLLRQRLYVTAVEGQTHTGTTSVHAIDTSSVITDVCTDYTIYGVSGTGIIKPSDLLLHNGIAFTSPTGELYAFKNITTGKTLQVLPCETPSQLIVINNTVVGAITSSNSTENNRFTTTIVTPTFFYSTNATTFNCTKPVLSYGPISVCSDGAIVGTSTLQNTRPSIVSLYDGEVEIPSAFSLSVQTEYLQVQAEQVIVDCPQYVCNGNSRCLQLLAQYTSACSNIEAALHSSAQLDSREIINMFQTSTQSLQLANITNFKGDYNFSSILTTRLGGRSAIEDLLFNKVVTSGLGTVDQDYKACSRDMAIADLVCSQYYNGIMVLPGVVDAEKMAMYTGSLTGAMVFGGLTAAAAIPFATAVQARLNYVALQTNVLQENQKILAESFNQAVGNISLALSSVNDAIQQTSEALNTVAIAIKKIQTVVNQQGEALSHLTAQLSNNFQAISTSIQDIYNRLEEVEANQQVDRLITGRLAALNAYVTQLLNQMSQIRQSRLLAQQKINECVKSQSSRYGFCGNGTHIFSLTQTAPNGIFFMHAVLVPNKFTRVNASAGICVDNTRGYSLQPQLILYQFNNSWRVTPRNMYEPRLPRQADFIQLTDCSVTFYNTTAANLPNIIPDIIDVNQTVSDIIDNLPTATPPQWDVGIYNNTILNLTVEINDLQERSKNLSQIADRLQNYIDNLNNTLVDLEWLNRVETYLKWPGSGYIPEAPRDGQAYVRKDGEWVLLSTFLGRSLEVLFQGPGSGGLNDIFEAQKIEWHEGSGHHHHHHHH", + "count": 1, + "label_entity_id": "1", + "label_asym_id": [ + "A" + ], + "auth_asym_id": [ + "A" + ] + } + }, + { + "proteinChain": { + "sequence": "HSQLQESGPGLVKPSQTLSLTCTVSGGSISSAGYYWNWIRQHPGKGLEWIGYIYYSGNTYYNPSLKSRVTISVDTSKSQFSLKLNSVTAADTAVYYCARKIVNWFDPWGQGTLVTVSS", + "count": 1, + "label_entity_id": "2", + "label_asym_id": [ + "B" + ], + "auth_asym_id": [ + "H" + ] + } + }, + { + "proteinChain": { + "sequence": "QSALTQPASVSGSPGQSITISCTGTSSDVGGYNYVSWYQQHPGKAPKLMIYDVSERPSGVSNRFSGSKSGNTASLTISGLQAEDEADYFCCSYAGYTTYVVFGGGTQLTVL", + "count": 1, + "label_entity_id": "3", + "label_asym_id": [ + "C" + ], + "auth_asym_id": [ + "L" + ] + } + } + ], + "covalent_bonds": [ + { + "entity1": 1, + "position1": 334, + "atom1": "SG", + "entity2": 1, + "position2": 377, + "atom2": "SG" + }, + { + "entity1": 1, + "position1": 348, + "atom1": "SG", + "entity2": 1, + "position2": 351, + "atom2": "SG" + }, + { + "entity1": 1, + "position1": 360, + "atom1": "SG", + "entity2": 1, + "position2": 385, + "atom2": "SG" + }, + { + "entity1": 2, + "position1": 22, + "atom1": "SG", + "entity2": 2, + "position2": 97, + "atom2": "SG" + }, + { + "entity1": 3, + "position1": 22, + "atom1": "SG", + "entity2": 3, + "position2": 90, + "atom2": "SG" + } + ], + "name": "9df0_H_L_A" + } +] \ No newline at end of file diff --git a/protenix_json/9e6k_H_L_C.json b/protenix_json/9e6k_H_L_C.json new file mode 100644 index 0000000000000000000000000000000000000000..7d75f61fc024ed10af58972ffc6db03a5fa031da --- /dev/null +++ b/protenix_json/9e6k_H_L_C.json @@ -0,0 +1,112 @@ +[ + { + "sequences": [ + { + "proteinChain": { + "sequence": "EVQLLESGGGLVQPGGSLRLSCAASGFTFSGYWMHWVRQAPGKGLEWVSRITYNGTTDYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCARGWLDVWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSC", + "count": 1, + "label_entity_id": "1", + "label_asym_id": [ + "A" + ], + "auth_asym_id": [ + "H" + ] + } + }, + { + "proteinChain": { + "sequence": "EIVLTQSPGTLSLSPGERATLSCRASQSVSSSNLAWYQQKPGQAPRLLIYGASSRATGVPDRFSGSGSGTDFTLTISRLEPEDFAVYYCQQSYSLPWTFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC", + "count": 1, + "label_entity_id": "2", + "label_asym_id": [ + "B" + ], + "auth_asym_id": [ + "L" + ] + } + }, + { + "proteinChain": { + "sequence": "AQKKCQEAINATCKGVSYCTGNSSECPPPGNAEDDTVCLDLGKCKDGKCIPFCEREQQLESCACNETDNSCKVCCRDLSGRCVPYVDAEQKNLFLRKGKPCTVGFCDMNGKCEKR", + "count": 1, + "label_entity_id": "3", + "label_asym_id": [ + "C" + ], + "auth_asym_id": [ + "C" + ] + } + } + ], + "covalent_bonds": [ + { + "entity1": 1, + "position1": 22, + "atom1": "SG", + "entity2": 1, + "position2": 95, + "atom2": "SG" + }, + { + "entity1": 1, + "position1": 140, + "atom1": "SG", + "entity2": 1, + "position2": 196, + "atom2": "SG" + }, + { + "entity1": 2, + "position1": 23, + "atom1": "SG", + "entity2": 2, + "position2": 89, + "atom2": "SG" + }, + { + "entity1": 2, + "position1": 135, + "atom1": "SG", + "entity2": 2, + "position2": 195, + "atom2": "SG" + }, + { + "entity1": 3, + "position1": 5, + "atom1": "SG", + "entity2": 3, + "position2": 26, + "atom2": "SG" + }, + { + "entity1": 3, + "position1": 38, + "atom1": "SG", + "entity2": 3, + "position2": 49, + "atom2": "SG" + }, + { + "entity1": 3, + "position1": 62, + "atom1": "SG", + "entity2": 3, + "position2": 82, + "atom2": "SG" + }, + { + "entity1": 3, + "position1": 101, + "atom1": "SG", + "entity2": 3, + "position2": 112, + "atom2": "SG" + } + ], + "name": "9e6k_H_L_C" + } +] \ No newline at end of file diff --git a/protenix_json/9fvb_C__A.json b/protenix_json/9fvb_C__A.json new file mode 100644 index 0000000000000000000000000000000000000000..010a9cfd02b258b62e5a9bba4d49b6c69da25f50 --- /dev/null +++ b/protenix_json/9fvb_C__A.json @@ -0,0 +1,43 @@ +[ + { + "sequences": [ + { + "proteinChain": { + "sequence": "GAMGATTLKMGMQASVGSVEYNSAKMLADTLEEMSQGEIKLALYPSAQLGDDRAMLQQLTLGDLDITYAEFGRMGLWIPRAEAVMLPYVAKDFDHLRRMFESDFGQGVRDEMLQKFNWRALDTWYNGTRETTSNRPLNSIEDFKGLKLRVPNAKQNLNYAKLSGASPTPMSFSEVYLALQTNAVDGQENPLPTIKTMKFYEVQKNLAMTHHIVNDQMVIISESTWQKLSDTDKDIIQKAVQKVGDAHTQTVKTQEAELVSFFKSEGINVTYPDLEPFREAMQPLYKEFDSNIGQPIVSKLAAM", + "count": 1, + "label_entity_id": "1", + "label_asym_id": [ + "A" + ], + "auth_asym_id": [ + "A" + ] + } + }, + { + "proteinChain": { + "sequence": "QVQLVESGGRLVQTGGSLRLSCAASGDTFSNYVMGWFRQAPGKEREFVAAISWTGANSYYADSVAGRFTISRDNAKNTVALQMNSLKPEDTAIYYCAADHFHVTHRKYDYWGQGTQVTVSSGGYPYDVPDYAGHHHHHH", + "count": 1, + "label_entity_id": "2", + "label_asym_id": [ + "C" + ], + "auth_asym_id": [ + "C" + ] + } + } + ], + "covalent_bonds": [ + { + "entity1": 2, + "position1": 22, + "atom1": "SG", + "entity2": 2, + "position2": 96, + "atom2": "SG" + } + ], + "name": "9fvb_C__A" + } +] \ No newline at end of file diff --git a/protenix_json/9fve_B__A.json b/protenix_json/9fve_B__A.json new file mode 100644 index 0000000000000000000000000000000000000000..be58520ec7862428b2026ae2c0c300caf9cb4fc2 --- /dev/null +++ b/protenix_json/9fve_B__A.json @@ -0,0 +1,43 @@ +[ + { + "sequences": [ + { + "proteinChain": { + "sequence": "GAMGATTLKMGMQASVGSVEYNSAKMLADTLEEMSQGEIKLALYPSAQLGDDRAMLQQLTLGDLDITYAEFGRMGLAIPRAEAVMLPYVAKDFDHLRRMFESDFGQGVRDEMLQKFNWRALDTWYNGTRETTSNRPLNSIEDFKGLKLRVPNAKQNLNYAKLSGASPTPMSFSEVYLALQTNAVDGQENPLPTIKTMKFYEVQKNLAMTHHIVNDQMVIISESTWQKLSDTDKDIIQKAVQKVGDAHTQTVKTQEAELVSFFKSEGINVTYPDLEPFREAMQPLYKEFDSNIGQPIVSKLAAM", + "count": 1, + "label_entity_id": "1", + "label_asym_id": [ + "A" + ], + "auth_asym_id": [ + "A" + ] + } + }, + { + "proteinChain": { + "sequence": "GSQVQLVESGGRLVQTGGSLRLSCAASGDTFSNYVMGWFRQAPGKEREFVAAISWTGANSYYADSVAGRFTISRDNAKNTVALQMNSLKPEDTAIYYCAADHFHVTHRKYDYWGQGTQVTVSS", + "count": 1, + "label_entity_id": "2", + "label_asym_id": [ + "B" + ], + "auth_asym_id": [ + "B" + ] + } + } + ], + "covalent_bonds": [ + { + "entity1": 2, + "position1": 24, + "atom1": "SG", + "entity2": 2, + "position2": 98, + "atom2": "SG" + } + ], + "name": "9fve_B__A" + } +] \ No newline at end of file diff --git a/protenix_json/9fzc_C__A.json b/protenix_json/9fzc_C__A.json new file mode 100644 index 0000000000000000000000000000000000000000..65bd1d03091208c76e2bd88c4cc500fa4a2537e9 --- /dev/null +++ b/protenix_json/9fzc_C__A.json @@ -0,0 +1,43 @@ +[ + { + "sequences": [ + { + "proteinChain": { + "sequence": "MSAPKDNTWYTGAKLGWSQYHDTGFINNNGPTHENQLGAGAFGGYQVNPYVGFEMGYDWLGRMPYKGSVENGAYKAQGVQLTAKLGYPITDDLDIYTRLGGMVWRADTKSNVYGKNHDTGVSPVFAGGVEYAITPEIATRLEYQWTNNIGDAHTIGTRPDNGMLSLGVSYRFA", + "count": 1, + "label_entity_id": "1", + "label_asym_id": [ + "A" + ], + "auth_asym_id": [ + "A" + ] + } + }, + { + "proteinChain": { + "sequence": "GPSQVQLVESGGGLVQPGGSLRLSCVVSGTGFTFSKSPMSWARQAPGKEREWVSAIFADSSTYYSDSVRGRFTISRDNAKNTVYLQMNNVKPEDTAVYYCGHRRLGKTTYDYRGKGTRVTVSA", + "count": 1, + "label_entity_id": "2", + "label_asym_id": [ + "C" + ], + "auth_asym_id": [ + "C" + ] + } + } + ], + "covalent_bonds": [ + { + "entity1": 2, + "position1": 25, + "atom1": "SG", + "entity2": 2, + "position2": 100, + "atom2": "SG" + } + ], + "name": "9fzc_C__A" + } +] \ No newline at end of file diff --git a/protenix_json/9ima_C_D_AB.json b/protenix_json/9ima_C_D_AB.json new file mode 100644 index 0000000000000000000000000000000000000000..dc5679aca5a293ee88ef5c7e09bb65a9db4c50cf --- /dev/null +++ b/protenix_json/9ima_C_D_AB.json @@ -0,0 +1,90 @@ +[ + { + "sequences": [ + { + "proteinChain": { + "sequence": "QVQLVQSGAEVKKPGASVKVSCKASGYSFTGYTMNWVRQAPGQGLEWMGLINPYNSDTNYAQKLQGRVTMTTDTSTSTAYMELRSLRSDDTAVYYCARVALRVALDYWGQGTLVTVSSASTKGPSVFPLAPCSRSTSESTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTKTYTCNVDHKPSNTKVDKRVESKYGLVPRGSHHHHHH", + "count": 1, + "label_entity_id": "1", + "label_asym_id": [ + "A" + ], + "auth_asym_id": [ + "C" + ] + } + }, + { + "proteinChain": { + "sequence": "DIQMTQSPSSLSASVGDRVTITCKASQNVATHVGWYQQKPGKAPKRLIYSASYRYSGVPSRFSGSGSGTEFTLTISNLQPEDFATYYCQQYNRYPYTFGQGTKLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC", + "count": 1, + "label_entity_id": "2", + "label_asym_id": [ + "B" + ], + "auth_asym_id": [ + "D" + ] + } + }, + { + "proteinChain": { + "sequence": "MVDMYKDCIESTGDYFLLCDAEGPWGIILESLAILGIVVTILLLLAFLFLMRKIQDCSQWNVLPTQLLFLLSVLGLFGLAFAFIIELNQQTAPVRYFLFGVLFALCFSCLLAHASNLVKLVRGCVSFSWTTILCIAIGCSLLQIIIATEYVTLIMTRGMMFVNMTPCQLNVDFVVLLVYVLFLMALTFFVSKATFCGPCENWKQHGRLIFITVLFSIIIWVVWISMLLRGNPQFQRQPQWDDPVVCIALVTNAWVFLLLYIVPELCILYRSCRQECPLQGNACPVTAYQHSFQVENQELSRARDSDGAEEDSGSGSGRGRGGSENLYFQGGSGSGGDYKDDDDKDYKDDDDK", + "count": 2, + "label_entity_id": "3", + "label_asym_id": [ + "C", + "D" + ], + "auth_asym_id": [ + "B", + "A" + ] + } + } + ], + "covalent_bonds": [ + { + "entity1": 1, + "position1": 22, + "atom1": "SG", + "entity2": 1, + "position2": 96, + "atom2": "SG" + }, + { + "entity1": 1, + "position1": 132, + "atom1": "SG", + "entity2": 2, + "position2": 214, + "atom2": "SG" + }, + { + "entity1": 1, + "position1": 145, + "atom1": "SG", + "entity2": 1, + "position2": 201, + "atom2": "SG" + }, + { + "entity1": 2, + "position1": 23, + "atom1": "SG", + "entity2": 2, + "position2": 88, + "atom2": "SG" + }, + { + "entity1": 2, + "position1": 134, + "atom1": "SG", + "entity2": 2, + "position2": 194, + "atom2": "SG" + } + ], + "name": "9ima_C_D_AB" + } +] \ No newline at end of file diff --git a/protenix_json/9jbq_A_B_C.json b/protenix_json/9jbq_A_B_C.json new file mode 100644 index 0000000000000000000000000000000000000000..0885ecdbe77fd584333482f3e788fdeb9b45d00b --- /dev/null +++ b/protenix_json/9jbq_A_B_C.json @@ -0,0 +1,80 @@ +[ + { + "sequences": [ + { + "proteinChain": { + "sequence": "QVQLVQSGAEVKKPGASVKVSCKASGYSFTSYWMHWVRQAPGQGLEWMGEINPSNGRTNYNEKFNTRVTMTRDTSTSTVYMELSSLRSEDTAVYYCVLYGNYVVYYTMDYWGQGTTVTVSSASTKGPSVFPLAPCSRSTSESTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTKTYTCNVDHKPSNTKVDKRVESKYGPP", + "count": 1, + "label_entity_id": "1", + "label_asym_id": [ + "A" + ], + "auth_asym_id": [ + "A" + ] + } + }, + { + "proteinChain": { + "sequence": "DIQLTQSPSFLSASVGDRVTITCSASTSVSYMEWYQQKPGKAPKLLIYTTSKLASGVPSRFSGSGSGTEFTLTISSLQPEDFATYYCHQWRNYPFTFGQGTKLEIKRAVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC", + "count": 1, + "label_entity_id": "2", + "label_asym_id": [ + "B" + ], + "auth_asym_id": [ + "B" + ] + } + }, + { + "proteinChain": { + "sequence": "ALLDELKALTAELKVYSVIQSQINAALSAKQGIRIDAGGIDLVDPTLYGYAVGDPRWKDSPEYALLSNLDTFSGKLSIKDFLSGSPKQSGELKGLSDEYPFEKDNNPVGNFATTVSDRSRPLNDKVNEKTTLLN", + "count": 1, + "label_entity_id": "3", + "label_asym_id": [ + "C" + ], + "auth_asym_id": [ + "C" + ] + } + } + ], + "covalent_bonds": [ + { + "entity1": 1, + "position1": 22, + "atom1": "SG", + "entity2": 1, + "position2": 96, + "atom2": "SG" + }, + { + "entity1": 1, + "position1": 148, + "atom1": "SG", + "entity2": 1, + "position2": 204, + "atom2": "SG" + }, + { + "entity1": 2, + "position1": 23, + "atom1": "SG", + "entity2": 2, + "position2": 87, + "atom2": "SG" + }, + { + "entity1": 2, + "position1": 133, + "atom1": "SG", + "entity2": 2, + "position2": 193, + "atom2": "SG" + } + ], + "name": "9jbq_A_B_C" + } +] \ No newline at end of file