Metric stringlengths 11 31 | Prostate_Cancer stringlengths 1 30 | Non_Cancerous stringlengths 1 30 |
|---|---|---|
Dataset_Type | Tumor samples | Benign samples |
Total_Cells | 30932 | 12205 |
Total_Genes | 846 | 779 |
Number_of_Samples | 7 | 7 |
Number_of_Clusters | 14 | 14 |
Seurat_Version | 5.1.0 | 5.1.0 |
Normalization_Method | LogNormalize + SCTransform | LogNormalize + SCTransform |
Integration_Method | Canonical Correlation Analysis | Canonical Correlation Analysis |
Dimensionality_Reduction | PCA + UMAP | PCA + UMAP |
Clustering_Resolution | 0.5 | 0.5 |
Variable_Features_Count | 2000 (VST method) | 2000 (VST method) |
PCA_Dimensions_Used | 01:15 | 01:15 |
UMAP_Metric | Cosine | Cosine |
Quality_Control_Applied | Yes (multi-step) | Yes (multi-step) |
Cell_Cycle_Regression | Yes (S.Score + G2M.Score) | Yes (S.Score + G2M.Score) |
Doublet_Removal | Yes (scDblFinder) | Yes (scDblFinder) |
Batch_Correction | Yes (SCTransform integration) | Yes (SCTransform integration) |
Min_Features_Per_Cell | >500 | >500 |
Ribosomal_Filter_Percentile | 90th percentile | 90th percentile |
Mitochondrial_Filter_Percentile | 90th percentile | 90th percentile |
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