backup / cfd_workflow_20261012 /setup_simulation.sh

Archive CFD workflow 2026-10-12: _root_files

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#!/bin/bash

# OpenFOAM Simulation Setup Script
# Usage: ./setup_simulation.sh <xxx>
# Where xxx is the subdirectory name under the outputs path
# ./setup_simulation.sh gen_meshes_1002
# ./setup_simulation.sh test_noreseed_myvae_100k_opt_diffout_givenshape_oridrag_w_phys_all
# ./setup_simulation.sh test_noreseed_myvae_100k_opt_diffout_givenshape_drivaernet_oridrag_w_phys_all
# ./setup_simulation.sh test_noreseed_myvae_100k_opt_diffout_givenshape_drivaernet_oridrag_w_phys_all_512

# ./setup_simulation.sh test_noreseed_myvae_100k_opt_diffout_givenshape_drivaernet_oridrag_w_phys_all

set -e  # Exit on any error

# Check if argument is provided
if [ $# -ne 1 ]; then
    echo "Usage: $0 <subdirectory_name>"
    echo "Example: $0 gen_meshes_1002"
    exit 1
fi

# Input parameter
SUBDIR_NAME="$1"

# Define paths
SCRIPT_DIR="$(cd "$(dirname "${BASH_SOURCE[0]}")" && pwd)"
TEMPLATE_DIR="/mnt/cvlab/scratch/cvlab/home/hantzhan/cfd_workflow/template"
# OUTPUT_BASE="/mnt/cvlab/scratch/cvlab/home/hantzhan/Dora/pytorch_lightning/outputs/Diffusion-Conditional/train_conditional_CLIPasso"
OUTPUT_BASE="/mnt/cvlab/scratch/cvlab/home/hantzhan/Dora/pytorch_lightning/outputs/Diffusion-Unconditional"

SOURCE_DIR="${OUTPUT_BASE}/${SUBDIR_NAME}"

echo "=== OpenFOAM Simulation Setup ==="
echo "Subdirectory: ${SUBDIR_NAME}"
echo "Source directory: ${SOURCE_DIR}"

# Check if source directory exists
if [ ! -d "${SOURCE_DIR}" ]; then
    echo "Error: Source directory does not exist: ${SOURCE_DIR}"
    exit 1
fi

# Check if template directory exists
if [ ! -d "${TEMPLATE_DIR}" ]; then
    echo "Error: Template directory does not exist: ${TEMPLATE_DIR}"
    echo "Please update TEMPLATE_DIR in the script to point to the correct template location."
    exit 1
fi

# Create main SUBDIR_NAME directory
MAIN_DIR="${SCRIPT_DIR}/${SUBDIR_NAME}"
echo "Creating main directory: ${MAIN_DIR}"

if [ -d "${MAIN_DIR}" ]; then
    echo "Warning: Main directory already exists: ${MAIN_DIR}"
    read -p "Do you want to overwrite it? (y/N): " -n 1 -r
    echo
    if [[ ! $REPLY =~ ^[Yy]$ ]]; then
        echo "Exiting without making changes."
        exit 0
    fi
    echo "Removing existing directory..."
    rm -rf "${MAIN_DIR}"
fi

mkdir -p "${MAIN_DIR}"

# Find all subdirectories in the source directory
echo "Searching for subdirectories in: ${SOURCE_DIR}"
SUBDIRS=($(find "${SOURCE_DIR}" -maxdepth 1 -type d ! -path "${SOURCE_DIR}"))

if [ ${#SUBDIRS[@]} -eq 0 ]; then
    echo "Error: No subdirectories found in ${SOURCE_DIR}"
    exit 1
fi

echo "Found ${#SUBDIRS[@]} subdirectory(ies):"
for subdir in "${SUBDIRS[@]}"; do
    echo "  $(basename "${subdir}")"
done

# Process each subdirectory
for SUBDIR_PATH in "${SUBDIRS[@]}"; do
    # Extract the basename of the subdirectory
    SUBDIR_BASENAME=$(basename "${SUBDIR_PATH}")
    
    # Find all STL files in this subdirectory
    echo ""
    echo "=== Processing subdirectory: ${SUBDIR_BASENAME} ==="
    echo "Searching for *.stl files in: ${SUBDIR_PATH}"
    STL_FILES=($(find "${SUBDIR_PATH}" -name "*.stl" -type f))
    
    if [ ${#STL_FILES[@]} -eq 0 ]; then
        echo "Warning: No STL files found in ${SUBDIR_PATH}, skipping..."
        continue
    fi
    
    echo "Found ${#STL_FILES[@]} STL file(s) in ${SUBDIR_BASENAME}:"
    for stl_file in "${STL_FILES[@]}"; do
        echo "  $(basename "${stl_file}")"
    done
    
    # Process each STL file in this subdirectory
    for STL_PATH in "${STL_FILES[@]}"; do
        # Extract the base name of the STL file (without .stl extension)
        STL_BASENAME=$(basename "${STL_PATH}" .stl)
        
        # Create simulation directory name using subdirectory basename + STL basename (as subdirectory of MAIN_DIR)
        SIM_DIR="${MAIN_DIR}/${SUBDIR_BASENAME}_${STL_BASENAME}"
        
        echo ""
        echo "--- Processing STL: ${STL_BASENAME} from ${SUBDIR_BASENAME} ---"
        echo "Creating simulation directory: ${SIM_DIR}"
        
        # Check if simulation directory already exists
        if [ -d "${SIM_DIR}" ]; then
            echo "Warning: Simulation directory already exists: ${SIM_DIR}"
            read -p "Do you want to overwrite it? (y/N): " -n 1 -r
            echo
            if [[ ! $REPLY =~ ^[Yy]$ ]]; then
                echo "Skipping ${STL_BASENAME} from ${SUBDIR_BASENAME}"
                continue
            fi
            echo "Removing existing directory..."
            rm -rf "${SIM_DIR}"
        fi
        
        # Copy template to simulation directory
        echo "Copying template from: ${TEMPLATE_DIR}"
        cp -r "${TEMPLATE_DIR}" "${SIM_DIR}"
        
        # Create triSurface directory if it doesn't exist
        TRISURFACE_DIR="${SIM_DIR}/constant/triSurface"
        # mkdir -p "${TRISURFACE_DIR}"
        
        # Copy and rename STL file
        CAR_STL_PATH="${TRISURFACE_DIR}/car.stl"
        echo "Copying STL file: ${STL_PATH} -> ${CAR_STL_PATH}"
        cp "${STL_PATH}" "${CAR_STL_PATH}"
        
        # Verify the STL file was copied successfully
        if [ ! -f "${CAR_STL_PATH}" ]; then
            echo "Error: Failed to copy STL file to ${CAR_STL_PATH}"
            continue
        fi
        
        # Call setup_simulation function from sim.py
        echo "Calling setup_simulation for: ${SIM_DIR}"
        cd "${SCRIPT_DIR}"
        
        # Use Python to call the setup_simulation function
        python3 -c "
import sys
sys.path.append('${SCRIPT_DIR}')
from sim import setup_simulation
import os
simdir = '${SIM_DIR}'
print(f'Setting up simulation for: {simdir}')
try:
    setup_simulation(simdir)
    print(f'Successfully set up simulation for: {os.path.basename(simdir)}')
except Exception as e:
    print(f'Error setting up simulation for {os.path.basename(simdir)}: {e}')
    sys.exit(1)
"
        
        if [ $? -eq 0 ]; then
            echo "✓ Successfully set up simulation for: ${STL_BASENAME} from ${SUBDIR_BASENAME}"
        else
            echo "✗ Failed to set up simulation for: ${STL_BASENAME} from ${SUBDIR_BASENAME}"
            continue
        fi
        
        # Print summary information
        echo "Simulation directory created: ${SIM_DIR}"
        echo "STL file location: ${CAR_STL_PATH}"
        
        # Check if config file was updated
        CONFIG_FILE="${SIM_DIR}/include/config"
        if [ -f "${CONFIG_FILE}" ]; then
            echo "Configuration file updated: ${CONFIG_FILE}"
            
            # Extract and display some key parameters
            echo "Key parameters:"
            grep -E "Aref|vr[1-4]_" "${CONFIG_FILE}" 2>/dev/null || echo "  (Could not extract parameters)"
        fi
        
    done
done

echo ""
echo "=== Setup Complete ==="
echo "Created simulation directories for all STL files in subdirectories of: ${SOURCE_DIR}"
echo "You can now run OpenFOAM simulations in the created directories."

# Optional: List all created simulation directories
echo ""
echo "Created simulation directories:"
for SUBDIR_PATH in "${SUBDIRS[@]}"; do
    SUBDIR_BASENAME=$(basename "${SUBDIR_PATH}")
    STL_FILES_IN_SUBDIR=($(find "${SUBDIR_PATH}" -name "*.stl" -type f))
    for STL_PATH in "${STL_FILES_IN_SUBDIR[@]}"; do
        STL_BASENAME=$(basename "${STL_PATH}" .stl)
        SIM_DIR="${MAIN_DIR}/${SUBDIR_BASENAME}_${STL_BASENAME}"
        if [ -d "${SIM_DIR}" ]; then
            echo "  ${SIM_DIR}"
        fi
    done
done

echo ""
echo "Next steps:"
echo "1. Navigate to a simulation directory"
echo "2. Check the mesh quality: checkMesh"
echo "3. Run the simulation: ./Allrun"
echo "4. Monitor progress: tail -f log.simpleFoam"

	#!/bin/bash

	# OpenFOAM Simulation Setup Script
	# Usage: ./setup_simulation.sh <xxx>
	# Where xxx is the subdirectory name under the outputs path
	# ./setup_simulation.sh gen_meshes_1002
	# ./setup_simulation.sh test_noreseed_myvae_100k_opt_diffout_givenshape_oridrag_w_phys_all
	# ./setup_simulation.sh test_noreseed_myvae_100k_opt_diffout_givenshape_drivaernet_oridrag_w_phys_all
	# ./setup_simulation.sh test_noreseed_myvae_100k_opt_diffout_givenshape_drivaernet_oridrag_w_phys_all_512

	# ./setup_simulation.sh test_noreseed_myvae_100k_opt_diffout_givenshape_drivaernet_oridrag_w_phys_all

	set -e # Exit on any error

	# Check if argument is provided
	if [ $# -ne 1 ]; then
	echo "Usage: $0 <subdirectory_name>"
	echo "Example: $0 gen_meshes_1002"
	exit 1
	fi

	# Input parameter
	SUBDIR_NAME="$1"

	# Define paths
	SCRIPT_DIR="$(cd "$(dirname "${BASH_SOURCE[0]}")" && pwd)"
	TEMPLATE_DIR="/mnt/cvlab/scratch/cvlab/home/hantzhan/cfd_workflow/template"
	# OUTPUT_BASE="/mnt/cvlab/scratch/cvlab/home/hantzhan/Dora/pytorch_lightning/outputs/Diffusion-Conditional/train_conditional_CLIPasso"
	OUTPUT_BASE="/mnt/cvlab/scratch/cvlab/home/hantzhan/Dora/pytorch_lightning/outputs/Diffusion-Unconditional"

	SOURCE_DIR="${OUTPUT_BASE}/${SUBDIR_NAME}"

	echo "=== OpenFOAM Simulation Setup ==="
	echo "Subdirectory: ${SUBDIR_NAME}"
	echo "Source directory: ${SOURCE_DIR}"

	# Check if source directory exists
	if [ ! -d "${SOURCE_DIR}" ]; then
	echo "Error: Source directory does not exist: ${SOURCE_DIR}"
	exit 1
	fi

	# Check if template directory exists
	if [ ! -d "${TEMPLATE_DIR}" ]; then
	echo "Error: Template directory does not exist: ${TEMPLATE_DIR}"
	echo "Please update TEMPLATE_DIR in the script to point to the correct template location."
	exit 1
	fi

	# Create main SUBDIR_NAME directory
	MAIN_DIR="${SCRIPT_DIR}/${SUBDIR_NAME}"
	echo "Creating main directory: ${MAIN_DIR}"

	if [ -d "${MAIN_DIR}" ]; then
	echo "Warning: Main directory already exists: ${MAIN_DIR}"
	read -p "Do you want to overwrite it? (y/N): " -n 1 -r
	echo
	if [[ ! $REPLY =~ ^[Yy]$ ]]; then
	echo "Exiting without making changes."
	exit 0
	fi
	echo "Removing existing directory..."
	rm -rf "${MAIN_DIR}"
	fi

	mkdir -p "${MAIN_DIR}"

	# Find all subdirectories in the source directory
	echo "Searching for subdirectories in: ${SOURCE_DIR}"
	SUBDIRS=($(find "${SOURCE_DIR}" -maxdepth 1 -type d ! -path "${SOURCE_DIR}"))

	if [ ${#SUBDIRS[@]} -eq 0 ]; then
	echo "Error: No subdirectories found in ${SOURCE_DIR}"
	exit 1
	fi

	echo "Found ${#SUBDIRS[@]} subdirectory(ies):"
	for subdir in "${SUBDIRS[@]}"; do
	echo " $(basename "${subdir}")"
	done

	# Process each subdirectory
	for SUBDIR_PATH in "${SUBDIRS[@]}"; do
	# Extract the basename of the subdirectory
	SUBDIR_BASENAME=$(basename "${SUBDIR_PATH}")

	# Find all STL files in this subdirectory
	echo ""
	echo "=== Processing subdirectory: ${SUBDIR_BASENAME} ==="
	echo "Searching for *.stl files in: ${SUBDIR_PATH}"
	STL_FILES=($(find "${SUBDIR_PATH}" -name "*.stl" -type f))

	if [ ${#STL_FILES[@]} -eq 0 ]; then
	echo "Warning: No STL files found in ${SUBDIR_PATH}, skipping..."
	continue
	fi

	echo "Found ${#STL_FILES[@]} STL file(s) in ${SUBDIR_BASENAME}:"
	for stl_file in "${STL_FILES[@]}"; do
	echo " $(basename "${stl_file}")"
	done

	# Process each STL file in this subdirectory
	for STL_PATH in "${STL_FILES[@]}"; do
	# Extract the base name of the STL file (without .stl extension)
	STL_BASENAME=$(basename "${STL_PATH}" .stl)

	# Create simulation directory name using subdirectory basename + STL basename (as subdirectory of MAIN_DIR)
	SIM_DIR="${MAIN_DIR}/${SUBDIR_BASENAME}_${STL_BASENAME}"

	echo ""
	echo "--- Processing STL: ${STL_BASENAME} from ${SUBDIR_BASENAME} ---"
	echo "Creating simulation directory: ${SIM_DIR}"

	# Check if simulation directory already exists
	if [ -d "${SIM_DIR}" ]; then
	echo "Warning: Simulation directory already exists: ${SIM_DIR}"
	read -p "Do you want to overwrite it? (y/N): " -n 1 -r
	echo
	if [[ ! $REPLY =~ ^[Yy]$ ]]; then
	echo "Skipping ${STL_BASENAME} from ${SUBDIR_BASENAME}"
	continue
	fi
	echo "Removing existing directory..."
	rm -rf "${SIM_DIR}"
	fi

	# Copy template to simulation directory
	echo "Copying template from: ${TEMPLATE_DIR}"
	cp -r "${TEMPLATE_DIR}" "${SIM_DIR}"

	# Create triSurface directory if it doesn't exist
	TRISURFACE_DIR="${SIM_DIR}/constant/triSurface"
	# mkdir -p "${TRISURFACE_DIR}"

	# Copy and rename STL file
	CAR_STL_PATH="${TRISURFACE_DIR}/car.stl"
	echo "Copying STL file: ${STL_PATH} -> ${CAR_STL_PATH}"
	cp "${STL_PATH}" "${CAR_STL_PATH}"

	# Verify the STL file was copied successfully
	if [ ! -f "${CAR_STL_PATH}" ]; then
	echo "Error: Failed to copy STL file to ${CAR_STL_PATH}"
	continue
	fi

	# Call setup_simulation function from sim.py
	echo "Calling setup_simulation for: ${SIM_DIR}"
	cd "${SCRIPT_DIR}"

	# Use Python to call the setup_simulation function
	python3 -c "
	import sys
	sys.path.append('${SCRIPT_DIR}')
	from sim import setup_simulation
	import os

	simdir = '${SIM_DIR}'
	print(f'Setting up simulation for: {simdir}')

	try:
	setup_simulation(simdir)
	print(f'Successfully set up simulation for: {os.path.basename(simdir)}')
	except Exception as e:
	print(f'Error setting up simulation for {os.path.basename(simdir)}: {e}')
	sys.exit(1)
	"

	if [ $? -eq 0 ]; then
	echo "✓ Successfully set up simulation for: ${STL_BASENAME} from ${SUBDIR_BASENAME}"
	else
	echo "✗ Failed to set up simulation for: ${STL_BASENAME} from ${SUBDIR_BASENAME}"
	continue
	fi

	# Print summary information
	echo "Simulation directory created: ${SIM_DIR}"
	echo "STL file location: ${CAR_STL_PATH}"

	# Check if config file was updated
	CONFIG_FILE="${SIM_DIR}/include/config"
	if [ -f "${CONFIG_FILE}" ]; then
	echo "Configuration file updated: ${CONFIG_FILE}"

	# Extract and display some key parameters
	echo "Key parameters:"
	grep -E "Aref\|vr[1-4]_" "${CONFIG_FILE}" 2>/dev/null \|\| echo " (Could not extract parameters)"
	fi

	done
	done

	echo ""
	echo "=== Setup Complete ==="
	echo "Created simulation directories for all STL files in subdirectories of: ${SOURCE_DIR}"
	echo "You can now run OpenFOAM simulations in the created directories."

	# Optional: List all created simulation directories
	echo ""
	echo "Created simulation directories:"
	for SUBDIR_PATH in "${SUBDIRS[@]}"; do
	SUBDIR_BASENAME=$(basename "${SUBDIR_PATH}")
	STL_FILES_IN_SUBDIR=($(find "${SUBDIR_PATH}" -name "*.stl" -type f))
	for STL_PATH in "${STL_FILES_IN_SUBDIR[@]}"; do
	STL_BASENAME=$(basename "${STL_PATH}" .stl)
	SIM_DIR="${MAIN_DIR}/${SUBDIR_BASENAME}_${STL_BASENAME}"
	if [ -d "${SIM_DIR}" ]; then
	echo " ${SIM_DIR}"
	fi
	done
	done

	echo ""
	echo "Next steps:"
	echo "1. Navigate to a simulation directory"
	echo "2. Check the mesh quality: checkMesh"
	echo "3. Run the simulation: ./Allrun"
	echo "4. Monitor progress: tail -f log.simpleFoam"