kejian/codesearchnet-python-linelen40-full

text stringlengths 89 104k	code_tokens list	avg_line_len float64 7.91 980	score float64 0 630
def preloop(self): ''' Executed before the command loop starts. ''' script_dir = os.path.dirname(os.path.realpath(__file__)) help_dir = os.path.join(script_dir, HELP_DIR_NAME) self.load_forth_commands(help_dir) self.load_shell_commands(help_dir)	[ "def", "preloop", "(", "self", ")", ":", "script_dir", "=", "os", ".", "path", ".", "dirname", "(", "os", ".", "path", ".", "realpath", "(", "__file__", ")", ")", "help_dir", "=", "os", ".", "path", ".", "join", "(", "script_dir", ",", "HELP_DIR_NAME...	46.666667	14
def find_TPs_and_DUPs(self, percent=5., makefig=False): """ Function which finds TPs and uses the calc_DUP_parameter function. To calculate DUP parameter evolution dependent of the star or core mass. Parameters ---------- fig : integer Figure number ...	[ "def", "find_TPs_and_DUPs", "(", "self", ",", "percent", "=", "5.", ",", "makefig", "=", "False", ")", ":", "t0_model", "=", "self", ".", "find_first_TP", "(", ")", "t0_idx", "=", "(", "t0_model", "-", "self", ".", "get", "(", "\"model_number\"", ")", ...	37.149533	18.738318
def orchestration_restore(self, saved_artifact_info, custom_params=None): """Orchestration restore :param saved_artifact_info: json with all required data to restore configuration on the device :param custom_params: custom parameters """ if saved_artifact_info is None or saved_...	[ "def", "orchestration_restore", "(", "self", ",", "saved_artifact_info", ",", "custom_params", "=", "None", ")", ":", "if", "saved_artifact_info", "is", "None", "or", "saved_artifact_info", "==", "''", ":", "raise", "Exception", "(", "'ConfigurationOperations'", ","...	50.622222	32.6
def to_xml(self): ''' Returns a DOM representation of the line. @return: Element ''' for n, v in {"name": self.name, "quantity": self.quantity, "unit_price": self.unit_price}.items(): if is_empty_or_none(v): raise LineError("'%s' a...	[ "def", "to_xml", "(", "self", ")", ":", "for", "n", ",", "v", "in", "{", "\"name\"", ":", "self", ".", "name", ",", "\"quantity\"", ":", "self", ".", "quantity", ",", "\"unit_price\"", ":", "self", ".", "unit_price", "}", ".", "items", "(", ")", ":...	45.391304	19.782609
def dp_from_p(p, ps, p_top=0., p_bot=1.1e5): """Get level thickness of pressure data, incorporating surface pressure. Level edges are defined as halfway between the levels, as well as the user- specified uppermost and lowermost values. The dp of levels whose bottom pressure is less than the surface pr...	[ "def", "dp_from_p", "(", "p", ",", "ps", ",", "p_top", "=", "0.", ",", "p_bot", "=", "1.1e5", ")", ":", "p_str", "=", "get_dim_name", "(", "p", ",", "(", "internal_names", ".", "PLEVEL_STR", ",", "'plev'", ")", ")", "p_vals", "=", "to_pascal", "(", ...	46.709677	19.951613
async def close(self, event): """Close the PLM device connection and don't try to reconnect.""" _LOGGER.info('Closing connection to Insteon Modem') self._closing = True self._auto_reconnect = False await self.protocol.close() if self.protocol.transport: self.p...	[ "async", "def", "close", "(", "self", ",", "event", ")", ":", "_LOGGER", ".", "info", "(", "'Closing connection to Insteon Modem'", ")", "self", ".", "_closing", "=", "True", "self", ".", "_auto_reconnect", "=", "False", "await", "self", ".", "protocol", "."...	44	8.1
def limit_value_string_length(value): """This method limits the string representation of the value to MAX_VALUE_LABEL_TEXT_LENGTH + 3 characters. :param value: Value to limit string representation :return: String holding the value with a maximum length of MAX_VALUE_LABEL_TEXT_LENGTH + 3 """ if isin...	[ "def", "limit_value_string_length", "(", "value", ")", ":", "if", "isinstance", "(", "value", ",", "string_types", ")", "and", "len", "(", "value", ")", ">", "constants", ".", "MAX_VALUE_LABEL_TEXT_LENGTH", ":", "value", "=", "value", "[", ":", "constants", ...	50.5	24.5
def listed(self): """Print blacklist packages """ print("\nPackages in the blacklist:\n") for black in self.get_black(): if black: print("{0}{1}{2}".format(self.meta.color["GREEN"], black, self.meta.color["ENDC"])) ...	[ "def", "listed", "(", "self", ")", ":", "print", "(", "\"\\nPackages in the blacklist:\\n\"", ")", "for", "black", "in", "self", ".", "get_black", "(", ")", ":", "if", "black", ":", "print", "(", "\"{0}{1}{2}\"", ".", "format", "(", "self", ".", "meta", ...	34.727273	14.181818
def to_dictionary(self): """Serialize an object into dictionary form. Useful if you have to serialize an array of objects into JSON. Otherwise, if you call the :meth:`to_json` method on each object in the list and then try to dump the array, you end up with an array with one string."""...	[ "def", "to_dictionary", "(", "self", ")", ":", "j", "=", "{", "}", "for", "p", "in", "self", ".", "properties", ":", "j", "[", "p", "]", "=", "getattr", "(", "self", ",", "p", ")", "return", "j" ]	37.636364	20.636364
def _parse(self, source, name, filename): """Internal parsing function used by `parse` and `compile`.""" return Parser(self, source, name, _encode_filename(filename)).parse()	[ "def", "_parse", "(", "self", ",", "source", ",", "name", ",", "filename", ")", ":", "return", "Parser", "(", "self", ",", "source", ",", "name", ",", "_encode_filename", "(", "filename", ")", ")", ".", "parse", "(", ")" ]	62.666667	12.666667
def append_rows(self, rows, between, refresh_presision): """Transform the rows of data to Measurements. Keyword arguments: rows -- an array of arrays [datetime, integral_measurement] between -- time between integral_measurements in seconds refresh_presision -- time between sensor values that compose the ...	[ "def", "append_rows", "(", "self", ",", "rows", ",", "between", ",", "refresh_presision", ")", ":", "for", "r", "in", "rows", ":", "Measurement", ".", "register_or_check", "(", "finish", "=", "r", "[", "0", "]", ",", "mean", "=", "r", "[", "1", "]", ...	49.5	28.7
def migrate(action): " Migration utils [create, run, undo, redo]. " from flaskext.evolution import Evolution from flask import current_app evolution = Evolution(current_app) evolution.manager(action)	[ "def", "migrate", "(", "action", ")", ":", "from", "flaskext", ".", "evolution", "import", "Evolution", "from", "flask", "import", "current_app", "evolution", "=", "Evolution", "(", "current_app", ")", "evolution", ".", "manager", "(", "action", ")" ]	35.666667	9
def cmd_delete(args): """Deletes a node""" major = args.get(0) minor = args.get(1) if major is not None: if major in penStore.data: if minor is None: if len(penStore.data[major]) > 0: if raw_input("are you sure (y/n)? ") not in ['y', 'Y', 'yes', 'Y...	[ "def", "cmd_delete", "(", "args", ")", ":", "major", "=", "args", ".", "get", "(", "0", ")", "minor", "=", "args", ".", "get", "(", "1", ")", "if", "major", "is", "not", "None", ":", "if", "major", "in", "penStore", ".", "data", ":", "if", "min...	35.961538	15.346154
def total_sparse_pixels_from_mask(mask, unmasked_sparse_grid_pixel_centres): """Given the full (i.e. without removing pixels which are outside the regular-masks) pixelization grid's pixel centers and the regular-masks, compute the total number of pixels which are within the regular-masks and thus used by the ...	[ "def", "total_sparse_pixels_from_mask", "(", "mask", ",", "unmasked_sparse_grid_pixel_centres", ")", ":", "total_sparse_pixels", "=", "0", "for", "unmasked_sparse_pixel_index", "in", "range", "(", "unmasked_sparse_grid_pixel_centres", ".", "shape", "[", "0", "]", ")", "...	39.333333	27.791667
def get_pushes(self, project, **params): """ Gets pushes from project, filtered by parameters By default this method will just return the latest 10 pushes (if they exist) :param project: project (repository name) to query data for :param params: keyword arguments to filter resu...	[ "def", "get_pushes", "(", "self", ",", "project", ",", "", "", "params", ")", ":", "return", "self", ".", "_get_json_list", "(", "self", ".", "PUSH_ENDPOINT", ",", "project", ",", "", "", "params", ")" ]	40	21.8
def submarine(space, smooth=True, taper=20.0): """Return a 'submarine' phantom consisting in an ellipsoid and a box. Parameters ---------- space : `DiscreteLp` Discretized space in which the phantom is supposed to be created. smooth : bool, optional If ``True``, the boundaries are s...	[ "def", "submarine", "(", "space", ",", "smooth", "=", "True", ",", "taper", "=", "20.0", ")", ":", "if", "space", ".", "ndim", "==", "2", ":", "if", "smooth", ":", "return", "_submarine_2d_smooth", "(", "space", ",", "taper", ")", "else", ":", "retur...	34.222222	19.259259
def run(self, args): """ Process command line arguments and run the given command command (start, stop, restart). """ prog = args[0] if len(args) < 2: self.usage(prog) return 1 command = args[1] if command == "start": s...	[ "def", "run", "(", "self", ",", "args", ")", ":", "prog", "=", "args", "[", "0", "]", "if", "len", "(", "args", ")", "<", "2", ":", "self", ".", "usage", "(", "prog", ")", "return", "1", "command", "=", "args", "[", "1", "]", "if", "command",...	24.136364	16.136364
def from_xml(self,xmlnode): """Initialize Delay object from an XML node. :Parameters: - `xmlnode`: the jabber:x:delay XML element. :Types: - `xmlnode`: `libxml2.xmlNode`""" if xmlnode.type!="element": raise ValueError("XML node is not a jabber:x:delay...	[ "def", "from_xml", "(", "self", ",", "xmlnode", ")", ":", "if", "xmlnode", ".", "type", "!=", "\"element\"", ":", "raise", "ValueError", "(", "\"XML node is not a jabber:x:delay element (not an element)\"", ")", "ns", "=", "get_node_ns_uri", "(", "xmlnode", ")", "...	39.46875	17.5
def _bprop_wrap(name, reqtype, doc): """ Helper function to generate properties :param name: The name of the subfield in the JSON dictionary :param reqtype: The compound query type the query list should be coerced into :param doc: Documentation for the field :return: the property. ""...	[ "def", "_bprop_wrap", "(", "name", ",", "reqtype", ",", "doc", ")", ":", "def", "fget", "(", "self", ")", ":", "return", "self", ".", "_subqueries", ".", "get", "(", "name", ")", "def", "fset", "(", "self", ",", "value", ")", ":", "if", "value", ...	31.108108	13.594595
def _loadThreePartSource(self, sourceFName, sourceLines): """is a helper for _loadOneSource. """ lineno = 1 for ln in sourceLines: lineno += 1 try: stem, pubType, source = ln.split("\t", 2) stem = stem.strip()[-9:] s...	[ "def", "_loadThreePartSource", "(", "self", ",", "sourceFName", ",", "sourceLines", ")", ":", "lineno", "=", "1", "for", "ln", "in", "sourceLines", ":", "lineno", "+=", "1", "try", ":", "stem", ",", "pubType", ",", "source", "=", "ln", ".", "split", "(...	39.571429	14.5
def latrec(radius, longitude, latitude): """ Convert from latitudinal coordinates to rectangular coordinates. http://naif.jpl.nasa.gov/pub/naif/toolkit_docs/C/cspice/latrec_c.html :param radius: Distance of a point from the origin. :type radius: float :param longitude: Longitude of point in ra...	[ "def", "latrec", "(", "radius", ",", "longitude", ",", "latitude", ")", ":", "radius", "=", "ctypes", ".", "c_double", "(", "radius", ")", "longitude", "=", "ctypes", ".", "c_double", "(", "longitude", ")", "latitude", "=", "ctypes", ".", "c_double", "("...	36.666667	12.47619
def generate(self, num_to_generate, starting_place): """Generate data based on some initial position.""" res = [] activ = starting_place[None, :] index = activ.__getattribute__(self.argfunc)(1) item = self.weights[index] for x in range(num_to_generate): activ ...	[ "def", "generate", "(", "self", ",", "num_to_generate", ",", "starting_place", ")", ":", "res", "=", "[", "]", "activ", "=", "starting_place", "[", "None", ",", ":", "]", "index", "=", "activ", ".", "__getattribute__", "(", "self", ".", "argfunc", ")", ...	38.692308	13.538462
def get_xdg_env(env_name, fallback): """ Used for XDG_* env variables to return fallback if unset or empty """ env = os.environ.get(env_name) return env if env else fallback	[ "def", "get_xdg_env", "(", "env_name", ",", "fallback", ")", ":", "env", "=", "os", ".", "environ", ".", "get", "(", "env_name", ")", "return", "env", "if", "env", "else", "fallback" ]	46	3.75
def execute(self): """Execute Main Loop""" try: logging.debug("Entering IOLoop") self.loop.start() logging.debug("Leaving IOLoop") except KeyboardInterrupt: logging.debug("Leaving IOLoop by KeyboardInterrupt") finally: self.hw_c...	[ "def", "execute", "(", "self", ")", ":", "try", ":", "logging", ".", "debug", "(", "\"Entering IOLoop\"", ")", "self", ".", "loop", ".", "start", "(", ")", "logging", ".", "debug", "(", "\"Leaving IOLoop\"", ")", "except", "KeyboardInterrupt", ":", "loggin...	33.6	12.9
def tabulate(tabular_data, headers=(), tablefmt="simple", floatfmt=_DEFAULT_FLOATFMT, numalign="decimal", stralign="left", missingval=_DEFAULT_MISSINGVAL, showindex="default", disable_numparse=False): """Format a fixed width table for pretty printing. """ if tabular_da...	[ "def", "tabulate", "(", "tabular_data", ",", "headers", "=", "(", ")", ",", "tablefmt", "=", "\"simple\"", ",", "floatfmt", "=", "_DEFAULT_FLOATFMT", ",", "numalign", "=", "\"decimal\"", ",", "stralign", "=", "\"left\"", ",", "missingval", "=", "_DEFAULT_MISSI...	45.594937	20.949367
def consume(self, routingKey, msg): """ Consumer for this (CaptureData) class. Gets the data sent from yieldMetricsValue and sends it to the storage backends. """ build_data = msg['build_data'] builder_info = yield self.master.data.get(("builders", build_data['builderid']...	[ "def", "consume", "(", "self", ",", "routingKey", ",", "msg", ")", ":", "build_data", "=", "msg", "[", "'build_data'", "]", "builder_info", "=", "yield", "self", ".", "master", ".", "data", ".", "get", "(", "(", "\"builders\"", ",", "build_data", "[", ...	54.85	26.35
def setup(self, port): """Connects to an Arduino UNO on serial port `port`. @throw RuntimeError can't connect to Arduino """ port = str(port) # timeout is used by all I/O operations self._serial = serial.Serial(port, 115200, timeout=2) time.sleep(2) # time to Ar...	[ "def", "setup", "(", "self", ",", "port", ")", ":", "port", "=", "str", "(", "port", ")", "# timeout is used by all I/O operations", "self", ".", "_serial", "=", "serial", ".", "Serial", "(", "port", ",", "115200", ",", "timeout", "=", "2", ")", "time", ...	34.47619	19.761905
def certificateOptionsFromPEMs(pemObjects, kw): # type: (List[AbstractPEMObject], Any) -> ssl.CerticateOptions """ Load a CertificateOptions from the given collection of PEM objects (already-loaded private keys and certificates). In those PEM objects, identify one private key and its correspond...	[ "def", "certificateOptionsFromPEMs", "(", "pemObjects", ",", "", "", "kw", ")", ":", "# type: (List[AbstractPEMObject], **Any) -> ssl.CerticateOptions", "keys", "=", "[", "key", "for", "key", "in", "pemObjects", "if", "isinstance", "(", "key", ",", "Key", ")", "...	36	24.277778
def calc_effective_diffusivity(self, inlets=None, outlets=None, domain_area=None, domain_length=None): r""" This calculates the effective diffusivity in this linear transport algorithm. Parameters ---------- inlets : array_like ...	[ "def", "calc_effective_diffusivity", "(", "self", ",", "inlets", "=", "None", ",", "outlets", "=", "None", ",", "domain_area", "=", "None", ",", "domain_length", "=", "None", ")", ":", "return", "self", ".", "_calc_eff_prop", "(", "inlets", "=", "inlets", ...	42.135135	25.189189
def _ip_route_linux(): ''' Return ip routing information for Linux distros (netstat is deprecated and may not be available) ''' # table main closest to old netstat inet output ret = [] cmd = 'ip -4 route show table main' out = __salt__['cmd.run'](cmd, python_shell=True) for line in o...	[ "def", "_ip_route_linux", "(", ")", ":", "# table main closest to old netstat inet output", "ret", "=", "[", "]", "cmd", "=", "'ip -4 route show table main'", "out", "=", "__salt__", "[", "'cmd.run'", "]", "(", "cmd", ",", "python_shell", "=", "True", ")", "for", ...	30.893617	13.170213
def parse_json(target, json, create_sections = False, create_options = False): """Given a confmanager object and a dictionary object, import the values from the dictionary into the object, optionally adding sections and options as it goes.""" is_dict = isinstance(json, dict) for o in json: if is_dict: sect...	[ "def", "parse_json", "(", "target", ",", "json", ",", "create_sections", "=", "False", ",", "create_options", "=", "False", ")", ":", "is_dict", "=", "isinstance", "(", "json", ",", "dict", ")", "for", "o", "in", "json", ":", "if", "is_dict", ":", "sec...	38.529412	20.117647
def strace_data_store_event(self, operation, address, address_range=0): """Sets an event to trigger trace logic when data write access is made. Args: self (JLink): the ``JLink`` instance. operation (int): one of the operations in ``JLinkStraceOperation``. address (int): th...	[ "def", "strace_data_store_event", "(", "self", ",", "operation", ",", "address", ",", "address_range", "=", "0", ")", ":", "cmd", "=", "enums", ".", "JLinkStraceCommand", ".", "TRACE_EVENT_SET", "event_info", "=", "structs", ".", "JLinkStraceEventInfo", "(", ")"...	40.481481	21.37037
def __get_doc_block_lines(self): """ Returns the start and end line of the DOcBlock of the stored routine code. """ line1 = None line2 = None i = 0 for line in self._routine_source_code_lines: if re.match(r'\s/\\*', line): line1 = i ...	[ "def", "__get_doc_block_lines", "(", "self", ")", ":", "line1", "=", "None", "line2", "=", "None", "i", "=", "0", "for", "line", "in", "self", ".", "_routine_source_code_lines", ":", "if", "re", ".", "match", "(", "r'\\s/\\\\*'", ",", "line", ")", ":",...	23.571429	20.52381
def get_strain_state_dict(strains, stresses, eq_stress=None, tol=1e-10, add_eq=True, sort=True): """ Creates a dictionary of voigt-notation stress-strain sets keyed by "strain state", i. e. a tuple corresponding to the non-zero entries in ratios to the lowest nonzero value, ...	[ "def", "get_strain_state_dict", "(", "strains", ",", "stresses", ",", "eq_stress", "=", "None", ",", "tol", "=", "1e-10", ",", "add_eq", "=", "True", ",", "sort", "=", "True", ")", ":", "# Recast stress/strains", "vstrains", "=", "np", ".", "array", "(", ...	44.377049	17.819672
def update_policy(self, id, policy): """ Create policy. https://www.nomadproject.io/api/acl-policies.html arguments: - name - policy returns: request.Response raises: - nomad.api.exceptions.BaseNomadException ...	[ "def", "update_policy", "(", "self", ",", "id", ",", "policy", ")", ":", "return", "self", ".", "request", "(", "\"policy\"", ",", "id", ",", "json", "=", "policy", ",", "method", "=", "\"post\"", ")" ]	29.6	19.133333
def to_array(self): """ Serializes this InvoiceMessage to a dictionary. :return: dictionary representation of this object. :rtype: dict """ array = super(InvoiceMessage, self).to_array() array['title'] = u(self.title) # py2: type unicode, py3: type str ...	[ "def", "to_array", "(", "self", ")", ":", "array", "=", "super", "(", "InvoiceMessage", ",", "self", ")", ".", "to_array", "(", ")", "array", "[", "'title'", "]", "=", "u", "(", "self", ".", "title", ")", "# py2: type unicode, py3: type str", "array", "[...	50.1	29.014286
def m2i(self, pkt, s): """ ASN1F_SEQUENCE behaves transparently, with nested ASN1_objects being dissected one by one. Because we use obj.dissect (see loop below) instead of obj.m2i (as we trust dissect to do the appropriate set_vals) we do not directly retrieve the list of nested...	[ "def", "m2i", "(", "self", ",", "pkt", ",", "s", ")", ":", "diff_tag", ",", "s", "=", "BER_tagging_dec", "(", "s", ",", "hidden_tag", "=", "self", ".", "ASN1_tag", ",", "implicit_tag", "=", "self", ".", "implicit_tag", ",", "explicit_tag", "=", "self",...	45.59375	16.90625
def from_dict(cls, data, read_only=False): '''Recreate a feature collection from a dictionary. The dictionary is of the format dumped by :meth:`to_dict`. Additional information, such as whether the feature collection should be read-only, is not included in this dictionary, and i...	[ "def", "from_dict", "(", "cls", ",", "data", ",", "read_only", "=", "False", ")", ":", "fc", "=", "cls", "(", "read_only", "=", "read_only", ")", "fc", ".", "_features", "=", "{", "}", "fc", ".", "_from_dict_update", "(", "data", ")", "return", "fc" ...	37.384615	21.384615
def get_tracks(self): """Returns the list of Tracks on this album.""" return _extract_tracks( self._request(self.ws_prefix + ".getInfo", cacheable=True), self.network )	[ "def", "get_tracks", "(", "self", ")", ":", "return", "_extract_tracks", "(", "self", ".", "_request", "(", "self", ".", "ws_prefix", "+", "\".getInfo\"", ",", "cacheable", "=", "True", ")", ",", "self", ".", "network", ")" ]	33.333333	23.833333
def snapshot(domain, name=None, suffix=None, **kwargs): ''' Create a snapshot of a VM. :param domain: domain name :param name: Name of the snapshot. If the name is omitted, then will be used original domain name with ISO 8601 time as a suffix. :param suffix: Add suffix for the new...	[ "def", "snapshot", "(", "domain", ",", "name", "=", "None", ",", "suffix", "=", "None", ",", "", "", "kwargs", ")", ":", "if", "name", "and", "name", ".", "lower", "(", ")", "==", "domain", ".", "lower", "(", ")", ":", "raise", "CommandExecutionE...	32.8125	27.229167
def parse_color(v, color_range=1): '''Receives a colour definition and returns a (r,g,b,a) tuple. Accepts: - v - (v) - (v,a) - (r,g,b) - (r,g,b,a) - #RRGGBB - RRGGBB - #RRGGBBAA - RRGGBBAA Returns a (red, green, blue, alpha) tuple, with values ranging from 0 to 1. ...	[ "def", "parse_color", "(", "v", ",", "color_range", "=", "1", ")", ":", "# unpack one-element tuples, they show up sometimes", "while", "isinstance", "(", "v", ",", "(", "tuple", ",", "list", ")", ")", "and", "len", "(", "v", ")", "==", "1", ":", "v", "=...	27.802817	18.619718
def point_to_line(point, segment_start, segment_end): """Given a point and a line segment, return the vector from the point to the closest point on the segment. """ # TODO: Needs unittests. segment_vec = segment_end - segment_start # t is distance along line t = -(segment_start - point).dot...	[ "def", "point_to_line", "(", "point", ",", "segment_start", ",", "segment_end", ")", ":", "# TODO: Needs unittests.", "segment_vec", "=", "segment_end", "-", "segment_start", "# t is distance along line", "t", "=", "-", "(", "segment_start", "-", "point", ")", ".", ...	35.384615	12.692308
def _iter_frequencies(self): """Iterate over the frequencies of this `QPlane` """ # work out how many frequencies we need minf, maxf = self.frange fcum_mismatch = log(maxf / minf) * (2 + self.q2)(1/2.) / 2. nfreq = int(max(1, ceil(fcum_mismatch / self.deltam))) ...	[ "def", "_iter_frequencies", "(", "self", ")", ":", "# work out how many frequencies we need", "minf", ",", "maxf", "=", "self", ".", "frange", "fcum_mismatch", "=", "log", "(", "maxf", "/", "minf", ")", "", "(", "2", "+", "self", ".", "q", "*", "2", ")...	42.214286	10.571429
def get_side_length_of_resize_handle(view, item): """Calculate the side length of a resize handle :param rafcon.gui.mygaphas.view.ExtendedGtkView view: View :param rafcon.gui.mygaphas.items.state.StateView item: StateView :return: side length :rtype: float """ from rafcon.gui.mygaphas.items...	[ "def", "get_side_length_of_resize_handle", "(", "view", ",", "item", ")", ":", "from", "rafcon", ".", "gui", ".", "mygaphas", ".", "items", ".", "state", "import", "StateView", ",", "NameView", "if", "isinstance", "(", "item", ",", "StateView", ")", ":", "...	40.071429	18.214286
def annual_event_counts(kind='all'): """ Returns a QuerySet of dicts, each one with these keys: * year - a date object representing the year * total - the number of events of `kind` that year kind - The Event `kind`, or 'all' for all kinds (default). """ qs = Event.objects if ...	[ "def", "annual_event_counts", "(", "kind", "=", "'all'", ")", ":", "qs", "=", "Event", ".", "objects", "if", "kind", "!=", "'all'", ":", "qs", "=", "qs", ".", "filter", "(", "kind", "=", "kind", ")", "qs", "=", "qs", ".", "annotate", "(", "year", ...	25.75	18.75
async def kick(self, user_id: base.Integer, until_date: typing.Union[base.Integer, None] = None): """ Use this method to kick a user from a group, a supergroup or a channel. In the case of supergroups and channels, the user will not be able to return to the group on th...	[ "async", "def", "kick", "(", "self", ",", "user_id", ":", "base", ".", "Integer", ",", "until_date", ":", "typing", ".", "Union", "[", "base", ".", "Integer", ",", "None", "]", "=", "None", ")", ":", "return", "await", "self", ".", "bot", ".", "kic...	53.304348	30.608696
def _GenerateNonImplementedMethod(self, method): """Generates and returns a method that can be set for a service methods. Args: method: Descriptor of the service method for which a method is to be generated. Returns: A method that can be added to the service class. """ return l...	[ "def", "_GenerateNonImplementedMethod", "(", "self", ",", "method", ")", ":", "return", "lambda", "inst", ",", "rpc_controller", ",", "request", ",", "callback", ":", "(", "self", ".", "_NonImplementedMethod", "(", "method", ".", "name", ",", "rpc_controller", ...	36	22.583333
def num_cols(x): """Returns number of cols in a given `Tensor`.""" if tf.compat.dimension_value(x.shape[-1]) is not None: return tf.compat.dimension_value(x.shape[-1]) return tf.shape(input=x)[-1]	[ "def", "num_cols", "(", "x", ")", ":", "if", "tf", ".", "compat", ".", "dimension_value", "(", "x", ".", "shape", "[", "-", "1", "]", ")", "is", "not", "None", ":", "return", "tf", ".", "compat", ".", "dimension_value", "(", "x", ".", "shape", "[...	40.4	11.8
def denoise(data, pon, work_dir): """Normalize read counts using panel of normal background or GC/mappability """ std_file = os.path.join(work_dir, "%s-crstandardized.tsv" % dd.get_sample_name(data)) denoise_file = os.path.join(work_dir, "%s-crdenoised.tsv" % dd.get_sample_name(data)) if not utils.f...	[ "def", "denoise", "(", "data", ",", "pon", ",", "work_dir", ")", ":", "std_file", "=", "os", ".", "path", ".", "join", "(", "work_dir", ",", "\"%s-crstandardized.tsv\"", "%", "dd", ".", "get_sample_name", "(", "data", ")", ")", "denoise_file", "=", "os",...	57.941176	23.705882
def setSparseOutput(outputs, name, value): """ Set region sparse output value. The region output memory is owned by the c++ caller and cannot be changed directly from python. Use this method to update the sparse output fields in the "outputs" array so it can be resized from the c++ code. :...	[ "def", "setSparseOutput", "(", "outputs", ",", "name", ",", "value", ")", ":", "# The region output memory is owned by the c++ and cannot be changed from", "# python. We use a special attribule named \"__{name}_len__\" to pass", "# the sparse array length back to c++", "lenAttr", "=", ...	44.137931	20.827586
def merge_dict(to_update: dict, other_dict: dict): """ merges b into a """ for key, value in other_dict.items(): has_map = ( isinstance(value, collections.Mapping) and isinstance(to_update.get(key, None), collections.Mapping) ) if has_map: merge_dict(...	[ "def", "merge_dict", "(", "to_update", ":", "dict", ",", "other_dict", ":", "dict", ")", ":", "for", "key", ",", "value", "in", "other_dict", ".", "items", "(", ")", ":", "has_map", "=", "(", "isinstance", "(", "value", ",", "collections", ".", "Mappin...	31.666667	17.083333
def read(self, input_stream, kmip_version=enums.KMIPVersion.KMIP_1_0): """ Read the data encoding the ProtocolVersion struct and decode it into its constituent parts. Args: input_stream (stream): A data stream containing encoded object data, supporting a read...	[ "def", "read", "(", "self", ",", "input_stream", ",", "kmip_version", "=", "enums", ".", "KMIPVersion", ".", "KMIP_1_0", ")", ":", "super", "(", "ProtocolVersion", ",", "self", ")", ".", "read", "(", "input_stream", ",", "kmip_version", "=", "kmip_version", ...	38.772727	23.545455
def get_all(self, include_archived=False): """Get all the conversations. Args: include_archived (bool): (optional) Whether to include archived conversations. Defaults to ``False``. Returns: List of all :class:`.Conversation` objects. """ ...	[ "def", "get_all", "(", "self", ",", "include_archived", "=", "False", ")", ":", "return", "[", "conv", "for", "conv", "in", "self", ".", "_conv_dict", ".", "values", "(", ")", "if", "not", "conv", ".", "is_archived", "or", "include_archived", "]" ]	34.916667	19.416667
def pprint(self, index=False, delimiter='-'): """Pretty-print the binary tree. :param index: If set to True (default: False), display level-order_ indexes using the format: ``{index}{delimiter}{value}``. :type index: bool :param delimiter: Delimiter character between the nod...	[ "def", "pprint", "(", "self", ",", "index", "=", "False", ",", "delimiter", "=", "'-'", ")", ":", "lines", "=", "_build_tree_string", "(", "self", ",", "0", ",", "index", ",", "delimiter", ")", "[", "0", "]", "print", "(", "'\\n'", "+", "'\\n'", "....	33	21.957447
def inv_slots_preferred(self): """ List of all available inventory slots in the preferred search order. Does not include the additional slots from the open window. 1. active slot 2. remainder of the hotbar 3. remainder of the persistent inventory """ slot...	[ "def", "inv_slots_preferred", "(", "self", ")", ":", "slots", "=", "[", "self", ".", "active_slot", "]", "slots", ".", "extend", "(", "slot", "for", "slot", "in", "self", ".", "window", ".", "hotbar_slots", "if", "slot", "!=", "self", ".", "active_slot",...	36.642857	15.071429
def log_analyzer(path): """This procedure replaces every line which can't be parsed with special object MalformedLogEntry. """ with handle(MalformedLogEntryError, lambda (c): invoke_restart('use_value', MalformedLogEntry(c.text...	[ "def", "log_analyzer", "(", "path", ")", ":", "with", "handle", "(", "MalformedLogEntryError", ",", "lambda", "(", "c", ")", ":", "invoke_restart", "(", "'use_value'", ",", "MalformedLogEntry", "(", "c", ".", "text", ")", ")", ")", ":", "for", "filename", ...	39.4	7.6
def sample_indexes(segyfile, t0=0.0, dt_override=None): """ Creates a list of values representing the samples in a trace at depth or time. The list starts at t0 and is incremented with amdt for the number of samples. If a dt_override is not provided it will try to find a dt in the file. Pa...	[ "def", "sample_indexes", "(", "segyfile", ",", "t0", "=", "0.0", ",", "dt_override", "=", "None", ")", ":", "if", "dt_override", "is", "None", ":", "dt_override", "=", "dt", "(", "segyfile", ")", "return", "[", "t0", "+", "t", "*", "dt_override", "for"...	24.821429	25.535714
def files_write(self, path, file, offset=0, create=False, truncate=False, count=None, **kwargs): """Writes to a mutable file in the MFS. .. code-block:: python >>> c.files_write("/test/file", io.BytesIO(b"hi"), create=True) b'' Parameters --...	[ "def", "files_write", "(", "self", ",", "path", ",", "file", ",", "offset", "=", "0", ",", "create", "=", "False", ",", "truncate", "=", "False", ",", "count", "=", "None", ",", "", "", "kwargs", ")", ":", "opts", "=", "{", "\"offset\"", ":", "...	35.545455	20.030303
def reconfigure_log_level(self): """ Returns a new standard logger instance """ if Global.LOGGER: Global.LOGGER.debug('reconfiguring logger level') stream_handlers = filter(lambda x: type(x) is logging.StreamHandler, self._logger_insta...	[ "def", "reconfigure_log_level", "(", "self", ")", ":", "if", "Global", ".", "LOGGER", ":", "Global", ".", "LOGGER", ".", "debug", "(", "'reconfiguring logger level'", ")", "stream_handlers", "=", "filter", "(", "lambda", "x", ":", "type", "(", "x", ")", "i...	34.153846	16.769231
def _set_tab_width(self, tab_width): """ Sets the width (in terms of space characters) for tab characters. """ font_metrics = QtGui.QFontMetrics(self.font) self._control.setTabStopWidth(tab_width * font_metrics.width(' ')) self._tab_width = tab_width	[ "def", "_set_tab_width", "(", "self", ",", "tab_width", ")", ":", "font_metrics", "=", "QtGui", ".", "QFontMetrics", "(", "self", ".", "font", ")", "self", ".", "_control", ".", "setTabStopWidth", "(", "tab_width", "*", "font_metrics", ".", "width", "(", "...	40.714286	13.571429
def limit(self, limit): """ Sets the limit of this ListEmployeeWagesRequest. Maximum number of Employee Wages to return per page. Can range between 1 and 200. The default is the maximum at 200. :param limit: The limit of this ListEmployeeWagesRequest. :type: int """ ...	[ "def", "limit", "(", "self", ",", "limit", ")", ":", "if", "limit", "is", "None", ":", "raise", "ValueError", "(", "\"Invalid value for `limit`, must not be `None`\"", ")", "if", "limit", ">", "200", ":", "raise", "ValueError", "(", "\"Invalid value for `limit`, m...	40.352941	30
def config_control(inherit_napalm_device=None, **kwargs): # pylint: disable=unused-argument ''' Will check if the configuration was changed. If differences found, will try to commit. In case commit unsuccessful, will try to rollback. :return: A tuple with a boolean that specifies if the config wa...	[ "def", "config_control", "(", "inherit_napalm_device", "=", "None", ",", "", "", "kwargs", ")", ":", "# pylint: disable=unused-argument", "result", "=", "True", "comment", "=", "''", "changed", ",", "not_changed_rsn", "=", "config_changed", "(", "inherit_napalm_de...	32.564103	26.153846
def library(repo): """Load packages from slpkg library and from local """ pkg_list, packages = [], "" if repo == "sbo": if (os.path.isfile( _meta_.lib_path + "{0}_repo/SLACKBUILDS.TXT".format(repo))): packages = Utils().read_file(_meta_.lib_path + "{0}_repo/" ...	[ "def", "library", "(", "repo", ")", ":", "pkg_list", ",", "packages", "=", "[", "]", ",", "\"\"", "if", "repo", "==", "\"sbo\"", ":", "if", "(", "os", ".", "path", ".", "isfile", "(", "_meta_", ".", "lib_path", "+", "\"{0}_repo/SLACKBUILDS.TXT\"", ".",...	42.291667	17.166667
def deltafmt(delta, decimals = None): """ Returns a human readable representation of a time with the format: [[[Ih]Jm]K[.L]s For example: 6h5m23s If "decimals" is specified, the seconds will be output with that many decimal places. If not, there will be two places for times less than 1 minute, one place for ...	[ "def", "deltafmt", "(", "delta", ",", "decimals", "=", "None", ")", ":", "try", ":", "delta", "=", "float", "(", "delta", ")", "except", ":", "return", "'(bad delta: %s)'", "%", "(", "str", "(", "delta", ")", ",", ")", "if", "delta", "<", "60", ":"...	30.147059	20.970588
def transfer_session_cookies_to_driver(self, domain=None): """Copies the Session's cookies into the webdriver Using the 'domain' parameter we choose the cookies we wish to transfer, we only transfer the cookies which belong to that domain. The domain defaults to our last visited site if...	[ "def", "transfer_session_cookies_to_driver", "(", "self", ",", "domain", "=", "None", ")", ":", "if", "not", "domain", "and", "self", ".", "_last_requests_url", ":", "domain", "=", "tldextract", ".", "extract", "(", "self", ".", "_last_requests_url", ")", ".",...	57.705882	30.705882
def update_stats_history(self): """Update stats history.""" # If the plugin data is a dict, the dict's key should be used if self.get_key() is None: item_name = '' else: item_name = self.get_key() # Build the history if self.get_export() and self.h...	[ "def", "update_stats_history", "(", "self", ")", ":", "# If the plugin data is a dict, the dict's key should be used", "if", "self", ".", "get_key", "(", ")", "is", "None", ":", "item_name", "=", "''", "else", ":", "item_name", "=", "self", ".", "get_key", "(", ...	49.962963	17.407407
def index(): """ Display productpage with normal user and test user buttons""" global productpage table = json2html.convert(json = json.dumps(productpage), table_attributes="class=\"table table-condensed table-bordered table-hover\"") return render_template('index.html', ...	[ "def", "index", "(", ")", ":", "global", "productpage", "table", "=", "json2html", ".", "convert", "(", "json", "=", "json", ".", "dumps", "(", "productpage", ")", ",", "table_attributes", "=", "\"class=\\\"table table-condensed table-bordered table-hover\\\"\"", ")...	41.5	29.375
def CompileReport(self, mediator): """Compiles an analysis report. Args: mediator (AnalysisMediator): mediates interactions between analysis plugins and other components, such as storage and dfvfs. Returns: AnalysisReport: analysis report. """ report_text = [ 'Session...	[ "def", "CompileReport", "(", "self", ",", "mediator", ")", ":", "report_text", "=", "[", "'Sessionize plugin identified {0:d} sessions and '", "'applied {1:d} tags.'", ".", "format", "(", "len", "(", "self", ".", "_events_per_session", ")", ",", "self", ".", "_numbe...	38.789474	19.631579
def current_iteration(self): """Get the index of the current iteration. Returns ------- cur_iter : int The index of the current iteration. """ out_cur_iter = ctypes.c_int(0) _safe_call(_LIB.LGBM_BoosterGetCurrentIteration( self.handle, ...	[ "def", "current_iteration", "(", "self", ")", ":", "out_cur_iter", "=", "ctypes", ".", "c_int", "(", "0", ")", "_safe_call", "(", "_LIB", ".", "LGBM_BoosterGetCurrentIteration", "(", "self", ".", "handle", ",", "ctypes", ".", "byref", "(", "out_cur_iter", ")...	29.153846	12.923077
def write_h5ad( self, filename: Optional[PathLike] = None, compression: Optional[str] = None, compression_opts: Union[int, Any] = None, force_dense: Optional[bool] = None ): """Write ``.h5ad``-formatted hdf5 file. .. note:: Setting compression to...	[ "def", "write_h5ad", "(", "self", ",", "filename", ":", "Optional", "[", "PathLike", "]", "=", "None", ",", "compression", ":", "Optional", "[", "str", "]", "=", "None", ",", "compression_opts", ":", "Union", "[", "int", ",", "Any", "]", "=", "None", ...	35.469388	20.326531
def create_new_account(data_dir, password, **geth_kwargs): """Creates a new Ethereum account on geth. This is useful for testing when you want to stress interaction (transfers) between Ethereum accounts. This command communicates with ``geth`` command over terminal interaction. It creates keystore...	[ "def", "create_new_account", "(", "data_dir", ",", "password", ",", "", "", "geth_kwargs", ")", ":", "if", "os", ".", "path", ".", "exists", "(", "password", ")", ":", "geth_kwargs", "[", "'password'", "]", "=", "password", "command", ",", "proc", "=",...	31.722222	22.222222
def owner_search_fields(self): """ Returns all the fields that are CharFields except for password from the User model. For the built-in User model, that means username, first_name, last_name, and email. """ try: from django.contrib.auth import get_user_model ...	[ "def", "owner_search_fields", "(", "self", ")", ":", "try", ":", "from", "django", ".", "contrib", ".", "auth", "import", "get_user_model", "except", "ImportError", ":", "# Django < 1.5", "from", "django", ".", "contrib", ".", "auth", ".", "models", "import", ...	38.4375	17.6875
def filter(self, scored_list): ''' Filtering with top-n ranking. Args: scored_list: The list of scoring. Retruns: The list of filtered result. ''' top_n_key = -1 * self.top_n top_n_list = sorted(scored_list, key=lambda x: x[1])[top_n_...	[ "def", "filter", "(", "self", ",", "scored_list", ")", ":", "top_n_key", "=", "-", "1", "*", "self", ".", "top_n", "top_n_list", "=", "sorted", "(", "scored_list", ",", "key", "=", "lambda", "x", ":", "x", "[", "1", "]", ")", "[", "top_n_key", ":",...	26.6	21.4
def state_id_generator(size=STATE_ID_LENGTH, chars=string.ascii_uppercase, used_state_ids=None): """ Create a new and unique state id Generates an id for a state. It randomly samples from random ascii uppercase letters size times and concatenates them. If the id already exists it draws a new one. :par...	[ "def", "state_id_generator", "(", "size", "=", "STATE_ID_LENGTH", ",", "chars", "=", "string", ".", "ascii_uppercase", ",", "used_state_ids", "=", "None", ")", ":", "new_state_id", "=", "''", ".", "join", "(", "random", ".", "choice", "(", "chars", ")", "f...	47.6875	26.875
def build_attrs(self, args, *kwargs): """Add select2's tag attributes.""" self.attrs.setdefault('data-minimum-input-length', 1) self.attrs.setdefault('data-tags', 'true') self.attrs.setdefault('data-token-separators', '[",", " "]') return super(Select2TagMixin, self).build_attr...	[ "def", "build_attrs", "(", "self", ",", "", "args", ",", "", "*", "kwargs", ")", ":", "self", ".", "attrs", ".", "setdefault", "(", "'data-minimum-input-length'", ",", "1", ")", "self", ".", "attrs", ".", "setdefault", "(", "'data-tags'", ",", "'true'"...	55.5	15.333333
def multi_packages(self, logins=None, platform=None, package_type=None, type_=None, access=None): """Return the private packages for a given set of usernames/logins.""" logger.debug('') method = self._multi_packages new_client = True try: # Onl...	[ "def", "multi_packages", "(", "self", ",", "logins", "=", "None", ",", "platform", "=", "None", ",", "package_type", "=", "None", ",", "type_", "=", "None", ",", "access", "=", "None", ")", ":", "logger", ".", "debug", "(", "''", ")", "method", "=", ...	43.333333	19.777778
async def get_eventhub_info_async(self): """ Get details on the specified EventHub async. :rtype: dict """ alt_creds = { "username": self._auth_config.get("iot_username"), "password":self._auth_config.get("iot_password")} try: mgmt_aut...	[ "async", "def", "get_eventhub_info_async", "(", "self", ")", ":", "alt_creds", "=", "{", "\"username\"", ":", "self", ".", "_auth_config", ".", "get", "(", "\"iot_username\"", ")", ",", "\"password\"", ":", "self", ".", "_auth_config", ".", "get", "(", "\"io...	45.548387	20
def camelcase_to_lowercase(camelcase_input, python_input=None): ''' a function to recursively convert data with camelcase key names into lowercase keys :param camelcase_input: list or dictionary with camelcase keys :param python_input: [optional] list or dictionary with default lower...	[ "def", "camelcase_to_lowercase", "(", "camelcase_input", ",", "python_input", "=", "None", ")", ":", "if", "python_input", ":", "if", "camelcase_input", ".", "__class__", "!=", "python_input", ".", "__class__", ":", "raise", "ValueError", "(", "'python_input type %s...	46.263158	30.578947
def cluster(self, algorithm=None): """Cluster the codebook. The clusters of the data instances can be assigned based on the BMUs. The method populates the class variable Somoclu.clusters. If viewing methods are called after clustering, but without colors for best matching units, colors w...	[ "def", "cluster", "(", "self", ",", "algorithm", "=", "None", ")", ":", "import", "sklearn", ".", "base", "if", "algorithm", "is", "None", ":", "import", "sklearn", ".", "cluster", "algorithm", "=", "sklearn", ".", "cluster", ".", "KMeans", "(", ")", "...	51.115385	19.846154
def move_into(self, destination_folder): # type: (Folder) -> None """Move the Folder into a different folder. This makes the Folder provided a child folder of the destination_folder. Raises: AuthError: Raised if Outlook returns a 401, generally caused by an invalid or expir...	[ "def", "move_into", "(", "self", ",", "destination_folder", ")", ":", "# type: (Folder) -> None", "headers", "=", "self", ".", "headers", "endpoint", "=", "'https://outlook.office.com/api/v2.0/me/MailFolders/'", "+", "self", ".", "id", "+", "'/move'", "payload", "=", ...	38.153846	28.769231
def list(payment): """ List all the refunds for a payment. :param payment: The payment object or the payment id :type payment: resources.Payment\|string :return: A collection of refunds :rtype resources.APIResourceCollection """ if isinstance(payment, res...	[ "def", "list", "(", "payment", ")", ":", "if", "isinstance", "(", "payment", ",", "resources", ".", "Payment", ")", ":", "payment", "=", "payment", ".", "id", "http_client", "=", "HttpClient", "(", ")", "response", ",", "_", "=", "http_client", ".", "g...	35.0625	18.1875
def _ep_need_close(self): """Peer has closed its end of the session.""" LOG.debug("Session %s close requested - closing...", self._name) links = self._links.copy() # may modify _links for link in links: link._session_closed()	[ "def", "_ep_need_close", "(", "self", ")", ":", "LOG", ".", "debug", "(", "\"Session %s close requested - closing...\"", ",", "self", ".", "_name", ")", "links", "=", "self", ".", "_links", ".", "copy", "(", ")", "# may modify _links", "for", "link", "in", "...	40.285714	11.571429
def save(self, content): """ Save any given content to the instance file. :param content: (str or bytes) :return: (None) """ # backup existing file if needed if os.path.exists(self.file_path) and not self.assume_yes: message = "Overwrite existing {}? (...	[ "def", "save", "(", "self", ",", "content", ")", ":", "# backup existing file if needed", "if", "os", ".", "path", ".", "exists", "(", "self", ".", "file_path", ")", "and", "not", "self", ".", "assume_yes", ":", "message", "=", "\"Overwrite existing {}? (y/n) ...	35.631579	11.947368
def _outliers(self,x): """ Compute number of outliers """ outliers = self._tukey(x, threshold = 1.5) return np.size(outliers)	[ "def", "_outliers", "(", "self", ",", "x", ")", ":", "outliers", "=", "self", ".", "_tukey", "(", "x", ",", "threshold", "=", "1.5", ")", "return", "np", ".", "size", "(", "outliers", ")" ]	26.666667	7
def mtf_bitransformer_all_layers_tiny(): """Test out all the layers on local CPU.""" hparams = mtf_bitransformer_tiny() hparams.moe_num_experts = 4 hparams.moe_expert_x = 4 hparams.moe_expert_y = 4 hparams.moe_hidden_size = 512 hparams.encoder_layers = [ "self_att", "local_self_att", "moe_1d", "moe_...	[ "def", "mtf_bitransformer_all_layers_tiny", "(", ")", ":", "hparams", "=", "mtf_bitransformer_tiny", "(", ")", "hparams", ".", "moe_num_experts", "=", "4", "hparams", ".", "moe_expert_x", "=", "4", "hparams", ".", "moe_expert_y", "=", "4", "hparams", ".", "moe_h...	36.666667	12.916667
def rvalues(self): """ in reversed order """ tmp = self while tmp is not None: yield tmp.data tmp = tmp.prev	[ "def", "rvalues", "(", "self", ")", ":", "tmp", "=", "self", "while", "tmp", "is", "not", "None", ":", "yield", "tmp", ".", "data", "tmp", "=", "tmp", ".", "prev" ]	20.75	12.125
def read_cache(self): """Reads the cached contents into memory. """ if os.path.exists(self._cache_file): self._cache = _read_cache_file(self._cache_file) else: self._cache = {}	[ "def", "read_cache", "(", "self", ")", ":", "if", "os", ".", "path", ".", "exists", "(", "self", ".", "_cache_file", ")", ":", "self", ".", "_cache", "=", "_read_cache_file", "(", "self", ".", "_cache_file", ")", "else", ":", "self", ".", "_cache", "...	32.285714	11.714286
def reweight(self, weight, edges=None, copy=False): '''Replaces existing edge weights. weight may be a scalar or 1d array. edges is a mask or index array that specifies a subset of edges to modify''' if not self.is_weighted(): warnings.warn('Cannot supply weights for unweighted graph; ' ...	[ "def", "reweight", "(", "self", ",", "weight", ",", "edges", "=", "None", ",", "copy", "=", "False", ")", ":", "if", "not", "self", ".", "is_weighted", "(", ")", ":", "warnings", ".", "warn", "(", "'Cannot supply weights for unweighted graph; '", "'ignoring ...	49.727273	20.272727
def add_library(self, name): """Add a library to the database This method is for adding a library by name (eg: "BuiltIn") rather than by a file. """ libdoc = LibraryDocumentation(name) if len(libdoc.keywords) > 0: # FIXME: figure out the path to the library f...	[ "def", "add_library", "(", "self", ",", "name", ")", ":", "libdoc", "=", "LibraryDocumentation", "(", "name", ")", "if", "len", "(", "libdoc", ".", "keywords", ")", ">", "0", ":", "# FIXME: figure out the path to the library file", "collection_id", "=", "self", ...	48.285714	19.785714
def intersection(self, other): """ Calculates the intersection of the two underlying bitarrays and returns a new bloom filter object.""" if self.capacity != other.capacity or \ self.error_rate != other.error_rate: raise ValueError("Intersecting filters requires both filte...	[ "def", "intersection", "(", "self", ",", "other", ")", ":", "if", "self", ".", "capacity", "!=", "other", ".", "capacity", "or", "self", ".", "error_rate", "!=", "other", ".", "error_rate", ":", "raise", "ValueError", "(", "\"Intersecting filters requires both...	47.7	11.5
def get_agents(self, addr=True, agent_cls=None, as_coro=False): """Get agents from the managed environment. This is a managing function for the :py:meth:`~creamas.environment.Environment.get_agents`. Returned agent list excludes the environment's manager agent (this agent) by de...	[ "def", "get_agents", "(", "self", ",", "addr", "=", "True", ",", "agent_cls", "=", "None", ",", "as_coro", "=", "False", ")", ":", "return", "self", ".", "env", ".", "get_agents", "(", "addr", "=", "addr", ",", "agent_cls", "=", "agent_cls", ")" ]	44	20.444444
def encode_offset_fetch_request(cls, group, payloads, from_kafka=False): """ Encode an OffsetFetchRequest struct. The request is encoded using version 0 if from_kafka is false, indicating a request for Zookeeper offsets. It is encoded using version 1 otherwise, indicating a request ...	[ "def", "encode_offset_fetch_request", "(", "cls", ",", "group", ",", "payloads", ",", "from_kafka", "=", "False", ")", ":", "version", "=", "1", "if", "from_kafka", "else", "0", "return", "kafka", ".", "protocol", ".", "commit", ".", "OffsetFetchRequest", "[...	47.157895	22.842105
def _save(self): """ save a JSON file representation of Tetrad Class for checkpoint""" ## save each attribute as dict fulldict = copy.deepcopy(self.__dict__) for i, j in fulldict.items(): if isinstance(j, Params): fulldict[i] = j.__dict__ fulldumps = ...	[ "def", "_save", "(", "self", ")", ":", "## save each attribute as dict", "fulldict", "=", "copy", ".", "deepcopy", "(", "self", ".", "__dict__", ")", "for", "i", ",", "j", "in", "fulldict", ".", "items", "(", ")", ":", "if", "isinstance", "(", "j", ","...	35.37931	13.137931
def AddKeys(self, key_list): """Mark additional columns as being part of the superkey. Supplements the Keys already extracted from the FSM template. Useful when adding new columns to existing tables. Note: This will impact attempts to further 'extend' the table as the superkey must be common bet...	[ "def", "AddKeys", "(", "self", ",", "key_list", ")", ":", "for", "keyname", "in", "key_list", ":", "if", "keyname", "not", "in", "self", ".", "header", ":", "raise", "KeyError", "(", "\"'%s'\"", "%", "keyname", ")", "self", ".", "_keys", "=", "self", ...	40.470588	19.764706
def rectwidth(self): """Calculate :ref:`pysynphot-formula-rectw`. Returns ------- ans : float Bandpass rectangular width. """ mywaveunits = self.waveunits.name self.convert('angstroms') wave = self.wave thru = self.throughput ...	[ "def", "rectwidth", "(", "self", ")", ":", "mywaveunits", "=", "self", ".", "waveunits", ".", "name", "self", ".", "convert", "(", "'angstroms'", ")", "wave", "=", "self", ".", "wave", "thru", "=", "self", ".", "throughput", "self", ".", "convert", "("...	21.608696	18.695652
def _send(key, value, metric_type): """Send the specified value to the statsd daemon via UDP without a direct socket connection. :param str value: The properly formatted statsd counter value """ if STATSD_PREFIX: key = '.'.join([STATSD_PREFIX, key]) try: STATSD_SOCKET.sendto('{...	[ "def", "_send", "(", "key", ",", "value", ",", "metric_type", ")", ":", "if", "STATSD_PREFIX", ":", "key", "=", "'.'", ".", "join", "(", "[", "STATSD_PREFIX", ",", "key", "]", ")", "try", ":", "STATSD_SOCKET", ".", "sendto", "(", "'{0}:{1}\|{2}'", ".", ...	35.25	16.0625
def save_data(self, filename=None): """Save data""" if filename is None: filename = self.filename if filename is None: filename = getcwd_or_home() filename, _selfilter = getsavefilename(self, _("Save data"), ...	[ "def", "save_data", "(", "self", ",", "filename", "=", "None", ")", ":", "if", "filename", "is", "None", ":", "filename", "=", "self", ".", "filename", "if", "filename", "is", "None", ":", "filename", "=", "getcwd_or_home", "(", ")", "filename", ",", "...	45.030303	16.666667
def get_image_tags(self): """ Fetches image labels (repository / tags) from Docker. :return: A dictionary, with image name and tags as the key and the image id as value. :rtype: dict """ current_images = self.images() tags = {tag: i['Id'] for i in current_images ...	[ "def", "get_image_tags", "(", "self", ")", ":", "current_images", "=", "self", ".", "images", "(", ")", "tags", "=", "{", "tag", ":", "i", "[", "'Id'", "]", "for", "i", "in", "current_images", "for", "tag", "in", "i", "[", "'RepoTags'", "]", "}", "...	35.6	21
def blow_out(self, location=None): """ Force any remaining liquid to dispense, by moving this pipette's plunger to the calibrated `blow_out` position Notes ----- If no `location` is passed, the pipette will blow_out from it's current position. Parameters...	[ "def", "blow_out", "(", "self", ",", "location", "=", "None", ")", ":", "if", "not", "self", ".", "tip_attached", ":", "log", ".", "warning", "(", "\"Cannot 'blow out' without a tip attached.\"", ")", "self", ".", "move_to", "(", "location", ")", "self", "."...	32.52381	22.761905
def aes_b64_encrypt(value, secret, block_size=AES.block_size): """ AES encrypt @value with @secret using the \|CFB\| mode of AES with a cryptographically secure initialization vector. -> (#str) AES encrypted @value .. from vital.security import aes_encrypt, aes_decrypt ...	[ "def", "aes_b64_encrypt", "(", "value", ",", "secret", ",", "block_size", "=", "AES", ".", "block_size", ")", ":", "# iv = randstr(block_size * 2, rng=random)", "iv", "=", "randstr", "(", "block_size", "*", "2", ")", "cipher", "=", "AES", ".", "new", "(", "s...	41.045455	17.318182

def preloop(self): ''' Executed before the command loop starts. ''' script_dir = os.path.dirname(os.path.realpath(__file__)) help_dir = os.path.join(script_dir, HELP_DIR_NAME) self.load_forth_commands(help_dir) self.load_shell_commands(help_dir)

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46.666667

14

def find_TPs_and_DUPs(self, percent=5., makefig=False): """ Function which finds TPs and uses the calc_DUP_parameter function. To calculate DUP parameter evolution dependent of the star or core mass. Parameters ---------- fig : integer Figure number ...

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37.149533

18.738318

def orchestration_restore(self, saved_artifact_info, custom_params=None): """Orchestration restore :param saved_artifact_info: json with all required data to restore configuration on the device :param custom_params: custom parameters """ if saved_artifact_info is None or saved_...

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50.622222

32.6

def to_xml(self): ''' Returns a DOM representation of the line. @return: Element ''' for n, v in {"name": self.name, "quantity": self.quantity, "unit_price": self.unit_price}.items(): if is_empty_or_none(v): raise LineError("'%s' a...

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45.391304

19.782609

def dp_from_p(p, ps, p_top=0., p_bot=1.1e5): """Get level thickness of pressure data, incorporating surface pressure. Level edges are defined as halfway between the levels, as well as the user- specified uppermost and lowermost values. The dp of levels whose bottom pressure is less than the surface pr...

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46.709677

19.951613

async def close(self, event): """Close the PLM device connection and don't try to reconnect.""" _LOGGER.info('Closing connection to Insteon Modem') self._closing = True self._auto_reconnect = False await self.protocol.close() if self.protocol.transport: self.p...

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44

8.1

def limit_value_string_length(value): """This method limits the string representation of the value to MAX_VALUE_LABEL_TEXT_LENGTH + 3 characters. :param value: Value to limit string representation :return: String holding the value with a maximum length of MAX_VALUE_LABEL_TEXT_LENGTH + 3 """ if isin...

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50.5

24.5

def listed(self): """Print blacklist packages """ print("\nPackages in the blacklist:\n") for black in self.get_black(): if black: print("{0}{1}{2}".format(self.meta.color["GREEN"], black, self.meta.color["ENDC"])) ...

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34.727273

14.181818

def to_dictionary(self): """Serialize an object into dictionary form. Useful if you have to serialize an array of objects into JSON. Otherwise, if you call the :meth:`to_json` method on each object in the list and then try to dump the array, you end up with an array with one string."""...

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37.636364

20.636364

def _parse(self, source, name, filename): """Internal parsing function used by `parse` and `compile`.""" return Parser(self, source, name, _encode_filename(filename)).parse()

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62.666667

12.666667

def append_rows(self, rows, between, refresh_presision): """Transform the rows of data to Measurements. Keyword arguments: rows -- an array of arrays [datetime, integral_measurement] between -- time between integral_measurements in seconds refresh_presision -- time between sensor values that compose the ...

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49.5

28.7

def migrate(action): " Migration utils [create, run, undo, redo]. " from flaskext.evolution import Evolution from flask import current_app evolution = Evolution(current_app) evolution.manager(action)

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35.666667

9

def cmd_delete(args): """Deletes a node""" major = args.get(0) minor = args.get(1) if major is not None: if major in penStore.data: if minor is None: if len(penStore.data[major]) > 0: if raw_input("are you sure (y/n)? ") not in ['y', 'Y', 'yes', 'Y...

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35.961538

15.346154

def total_sparse_pixels_from_mask(mask, unmasked_sparse_grid_pixel_centres): """Given the full (i.e. without removing pixels which are outside the regular-masks) pixelization grid's pixel centers and the regular-masks, compute the total number of pixels which are within the regular-masks and thus used by the ...

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39.333333

27.791667

def get_pushes(self, project, **params): """ Gets pushes from project, filtered by parameters By default this method will just return the latest 10 pushes (if they exist) :param project: project (repository name) to query data for :param params: keyword arguments to filter resu...

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40

21.8

def submarine(space, smooth=True, taper=20.0): """Return a 'submarine' phantom consisting in an ellipsoid and a box. Parameters ---------- space : `DiscreteLp` Discretized space in which the phantom is supposed to be created. smooth : bool, optional If ``True``, the boundaries are s...

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34.222222

19.259259

def run(self, args): """ Process command line arguments and run the given command command (start, stop, restart). """ prog = args[0] if len(args) < 2: self.usage(prog) return 1 command = args[1] if command == "start": s...

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24.136364

16.136364

def from_xml(self,xmlnode): """Initialize Delay object from an XML node. :Parameters: - `xmlnode`: the jabber:x:delay XML element. :Types: - `xmlnode`: `libxml2.xmlNode`""" if xmlnode.type!="element": raise ValueError("XML node is not a jabber:x:delay...

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39.46875

17.5

def _bprop_wrap(name, reqtype, doc): """ Helper function to generate properties :param name: The name of the subfield in the JSON dictionary :param reqtype: The compound query type the query list should be coerced into :param doc: Documentation for the field :return: the property. ""...

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31.108108

13.594595

def _loadThreePartSource(self, sourceFName, sourceLines): """is a helper for _loadOneSource. """ lineno = 1 for ln in sourceLines: lineno += 1 try: stem, pubType, source = ln.split("\t", 2) stem = stem.strip()[-9:] s...

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39.571429

14.5

def latrec(radius, longitude, latitude): """ Convert from latitudinal coordinates to rectangular coordinates. http://naif.jpl.nasa.gov/pub/naif/toolkit_docs/C/cspice/latrec_c.html :param radius: Distance of a point from the origin. :type radius: float :param longitude: Longitude of point in ra...

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36.666667

12.47619

def generate(self, num_to_generate, starting_place): """Generate data based on some initial position.""" res = [] activ = starting_place[None, :] index = activ.__getattribute__(self.argfunc)(1) item = self.weights[index] for x in range(num_to_generate): activ ...

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38.692308

13.538462

def get_xdg_env(env_name, fallback): """ Used for XDG_* env variables to return fallback if unset *or* empty """ env = os.environ.get(env_name) return env if env else fallback

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46

3.75

def execute(self): """Execute Main Loop""" try: logging.debug("Entering IOLoop") self.loop.start() logging.debug("Leaving IOLoop") except KeyboardInterrupt: logging.debug("Leaving IOLoop by KeyboardInterrupt") finally: self.hw_c...

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33.6

12.9

def tabulate(tabular_data, headers=(), tablefmt="simple", floatfmt=_DEFAULT_FLOATFMT, numalign="decimal", stralign="left", missingval=_DEFAULT_MISSINGVAL, showindex="default", disable_numparse=False): """Format a fixed width table for pretty printing. """ if tabular_da...

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45.594937

20.949367

def consume(self, routingKey, msg): """ Consumer for this (CaptureData) class. Gets the data sent from yieldMetricsValue and sends it to the storage backends. """ build_data = msg['build_data'] builder_info = yield self.master.data.get(("builders", build_data['builderid']...

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54.85

26.35

def setup(self, port): """Connects to an Arduino UNO on serial port `port`. @throw RuntimeError can't connect to Arduino """ port = str(port) # timeout is used by all I/O operations self._serial = serial.Serial(port, 115200, timeout=2) time.sleep(2) # time to Ar...

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34.47619

19.761905

def certificateOptionsFromPEMs(pemObjects, **kw): # type: (List[AbstractPEMObject], **Any) -> ssl.CerticateOptions """ Load a CertificateOptions from the given collection of PEM objects (already-loaded private keys and certificates). In those PEM objects, identify one private key and its correspond...

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36

24.277778

def calc_effective_diffusivity(self, inlets=None, outlets=None, domain_area=None, domain_length=None): r""" This calculates the effective diffusivity in this linear transport algorithm. Parameters ---------- inlets : array_like ...

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42.135135

25.189189

def _ip_route_linux(): ''' Return ip routing information for Linux distros (netstat is deprecated and may not be available) ''' # table main closest to old netstat inet output ret = [] cmd = 'ip -4 route show table main' out = __salt__['cmd.run'](cmd, python_shell=True) for line in o...

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def parse_json(target, json, create_sections = False, create_options = False): """Given a confmanager object and a dictionary object, import the values from the dictionary into the object, optionally adding sections and options as it goes.""" is_dict = isinstance(json, dict) for o in json: if is_dict: sect...

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def strace_data_store_event(self, operation, address, address_range=0): """Sets an event to trigger trace logic when data write access is made. Args: self (JLink): the ``JLink`` instance. operation (int): one of the operations in ``JLinkStraceOperation``. address (int): th...

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def __get_doc_block_lines(self): """ Returns the start and end line of the DOcBlock of the stored routine code. """ line1 = None line2 = None i = 0 for line in self._routine_source_code_lines: if re.match(r'\s*/\*\*', line): line1 = i ...

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def get_strain_state_dict(strains, stresses, eq_stress=None, tol=1e-10, add_eq=True, sort=True): """ Creates a dictionary of voigt-notation stress-strain sets keyed by "strain state", i. e. a tuple corresponding to the non-zero entries in ratios to the lowest nonzero value, ...

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def update_policy(self, id, policy): """ Create policy. https://www.nomadproject.io/api/acl-policies.html arguments: - name - policy returns: request.Response raises: - nomad.api.exceptions.BaseNomadException ...

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def to_array(self): """ Serializes this InvoiceMessage to a dictionary. :return: dictionary representation of this object. :rtype: dict """ array = super(InvoiceMessage, self).to_array() array['title'] = u(self.title) # py2: type unicode, py3: type str ...

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def m2i(self, pkt, s): """ ASN1F_SEQUENCE behaves transparently, with nested ASN1_objects being dissected one by one. Because we use obj.dissect (see loop below) instead of obj.m2i (as we trust dissect to do the appropriate set_vals) we do not directly retrieve the list of nested...

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def from_dict(cls, data, read_only=False): '''Recreate a feature collection from a dictionary. The dictionary is of the format dumped by :meth:`to_dict`. Additional information, such as whether the feature collection should be read-only, is not included in this dictionary, and i...

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def get_tracks(self): """Returns the list of Tracks on this album.""" return _extract_tracks( self._request(self.ws_prefix + ".getInfo", cacheable=True), self.network )

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def snapshot(domain, name=None, suffix=None, **kwargs): ''' Create a snapshot of a VM. :param domain: domain name :param name: Name of the snapshot. If the name is omitted, then will be used original domain name with ISO 8601 time as a suffix. :param suffix: Add suffix for the new...

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def parse_color(v, color_range=1): '''Receives a colour definition and returns a (r,g,b,a) tuple. Accepts: - v - (v) - (v,a) - (r,g,b) - (r,g,b,a) - #RRGGBB - RRGGBB - #RRGGBBAA - RRGGBBAA Returns a (red, green, blue, alpha) tuple, with values ranging from 0 to 1. ...

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def point_to_line(point, segment_start, segment_end): """Given a point and a line segment, return the vector from the point to the closest point on the segment. """ # TODO: Needs unittests. segment_vec = segment_end - segment_start # t is distance along line t = -(segment_start - point).dot...

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def _iter_frequencies(self): """Iterate over the frequencies of this `QPlane` """ # work out how many frequencies we need minf, maxf = self.frange fcum_mismatch = log(maxf / minf) * (2 + self.q**2)**(1/2.) / 2. nfreq = int(max(1, ceil(fcum_mismatch / self.deltam))) ...

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def get_side_length_of_resize_handle(view, item): """Calculate the side length of a resize handle :param rafcon.gui.mygaphas.view.ExtendedGtkView view: View :param rafcon.gui.mygaphas.items.state.StateView item: StateView :return: side length :rtype: float """ from rafcon.gui.mygaphas.items...

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def annual_event_counts(kind='all'): """ Returns a QuerySet of dicts, each one with these keys: * year - a date object representing the year * total - the number of events of `kind` that year kind - The Event `kind`, or 'all' for all kinds (default). """ qs = Event.objects if ...

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async def kick(self, user_id: base.Integer, until_date: typing.Union[base.Integer, None] = None): """ Use this method to kick a user from a group, a supergroup or a channel. In the case of supergroups and channels, the user will not be able to return to the group on th...

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def _GenerateNonImplementedMethod(self, method): """Generates and returns a method that can be set for a service methods. Args: method: Descriptor of the service method for which a method is to be generated. Returns: A method that can be added to the service class. """ return l...

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def num_cols(x): """Returns number of cols in a given `Tensor`.""" if tf.compat.dimension_value(x.shape[-1]) is not None: return tf.compat.dimension_value(x.shape[-1]) return tf.shape(input=x)[-1]

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def denoise(data, pon, work_dir): """Normalize read counts using panel of normal background or GC/mappability """ std_file = os.path.join(work_dir, "%s-crstandardized.tsv" % dd.get_sample_name(data)) denoise_file = os.path.join(work_dir, "%s-crdenoised.tsv" % dd.get_sample_name(data)) if not utils.f...

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def setSparseOutput(outputs, name, value): """ Set region sparse output value. The region output memory is owned by the c++ caller and cannot be changed directly from python. Use this method to update the sparse output fields in the "outputs" array so it can be resized from the c++ code. :...

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def merge_dict(to_update: dict, other_dict: dict): """ merges b into a """ for key, value in other_dict.items(): has_map = ( isinstance(value, collections.Mapping) and isinstance(to_update.get(key, None), collections.Mapping) ) if has_map: merge_dict(...

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def read(self, input_stream, kmip_version=enums.KMIPVersion.KMIP_1_0): """ Read the data encoding the ProtocolVersion struct and decode it into its constituent parts. Args: input_stream (stream): A data stream containing encoded object data, supporting a read...

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def get_all(self, include_archived=False): """Get all the conversations. Args: include_archived (bool): (optional) Whether to include archived conversations. Defaults to ``False``. Returns: List of all :class:`.Conversation` objects. """ ...

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def pprint(self, index=False, delimiter='-'): """Pretty-print the binary tree. :param index: If set to True (default: False), display level-order_ indexes using the format: ``{index}{delimiter}{value}``. :type index: bool :param delimiter: Delimiter character between the nod...

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def inv_slots_preferred(self): """ List of all available inventory slots in the preferred search order. Does not include the additional slots from the open window. 1. active slot 2. remainder of the hotbar 3. remainder of the persistent inventory """ slot...

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def log_analyzer(path): """This procedure replaces every line which can't be parsed with special object MalformedLogEntry. """ with handle(MalformedLogEntryError, lambda (c): invoke_restart('use_value', MalformedLogEntry(c.text...

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def sample_indexes(segyfile, t0=0.0, dt_override=None): """ Creates a list of values representing the samples in a trace at depth or time. The list starts at *t0* and is incremented with am*dt* for the number of samples. If a *dt_override* is not provided it will try to find a *dt* in the file. Pa...

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def files_write(self, path, file, offset=0, create=False, truncate=False, count=None, **kwargs): """Writes to a mutable file in the MFS. .. code-block:: python >>> c.files_write("/test/file", io.BytesIO(b"hi"), create=True) b'' Parameters --...

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def reconfigure_log_level(self): """ Returns a new standard logger instance """ if Global.LOGGER: Global.LOGGER.debug('reconfiguring logger level') stream_handlers = filter(lambda x: type(x) is logging.StreamHandler, self._logger_insta...

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def _set_tab_width(self, tab_width): """ Sets the width (in terms of space characters) for tab characters. """ font_metrics = QtGui.QFontMetrics(self.font) self._control.setTabStopWidth(tab_width * font_metrics.width(' ')) self._tab_width = tab_width

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def limit(self, limit): """ Sets the limit of this ListEmployeeWagesRequest. Maximum number of Employee Wages to return per page. Can range between 1 and 200. The default is the maximum at 200. :param limit: The limit of this ListEmployeeWagesRequest. :type: int """ ...

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def config_control(inherit_napalm_device=None, **kwargs): # pylint: disable=unused-argument ''' Will check if the configuration was changed. If differences found, will try to commit. In case commit unsuccessful, will try to rollback. :return: A tuple with a boolean that specifies if the config wa...

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def library(repo): """Load packages from slpkg library and from local """ pkg_list, packages = [], "" if repo == "sbo": if (os.path.isfile( _meta_.lib_path + "{0}_repo/SLACKBUILDS.TXT".format(repo))): packages = Utils().read_file(_meta_.lib_path + "{0}_repo/" ...

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def deltafmt(delta, decimals = None): """ Returns a human readable representation of a time with the format: [[[Ih]Jm]K[.L]s For example: 6h5m23s If "decimals" is specified, the seconds will be output with that many decimal places. If not, there will be two places for times less than 1 minute, one place for ...

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def transfer_session_cookies_to_driver(self, domain=None): """Copies the Session's cookies into the webdriver Using the 'domain' parameter we choose the cookies we wish to transfer, we only transfer the cookies which belong to that domain. The domain defaults to our last visited site if...

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def update_stats_history(self): """Update stats history.""" # If the plugin data is a dict, the dict's key should be used if self.get_key() is None: item_name = '' else: item_name = self.get_key() # Build the history if self.get_export() and self.h...

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def index(): """ Display productpage with normal user and test user buttons""" global productpage table = json2html.convert(json = json.dumps(productpage), table_attributes="class=\"table table-condensed table-bordered table-hover\"") return render_template('index.html', ...

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def CompileReport(self, mediator): """Compiles an analysis report. Args: mediator (AnalysisMediator): mediates interactions between analysis plugins and other components, such as storage and dfvfs. Returns: AnalysisReport: analysis report. """ report_text = [ 'Session...

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def current_iteration(self): """Get the index of the current iteration. Returns ------- cur_iter : int The index of the current iteration. """ out_cur_iter = ctypes.c_int(0) _safe_call(_LIB.LGBM_BoosterGetCurrentIteration( self.handle, ...

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def write_h5ad( self, filename: Optional[PathLike] = None, compression: Optional[str] = None, compression_opts: Union[int, Any] = None, force_dense: Optional[bool] = None ): """Write ``.h5ad``-formatted hdf5 file. .. note:: Setting compression to...

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def create_new_account(data_dir, password, **geth_kwargs): """Creates a new Ethereum account on geth. This is useful for testing when you want to stress interaction (transfers) between Ethereum accounts. This command communicates with ``geth`` command over terminal interaction. It creates keystore...

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def owner_search_fields(self): """ Returns all the fields that are CharFields except for password from the User model. For the built-in User model, that means username, first_name, last_name, and email. """ try: from django.contrib.auth import get_user_model ...

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def filter(self, scored_list): ''' Filtering with top-n ranking. Args: scored_list: The list of scoring. Retruns: The list of filtered result. ''' top_n_key = -1 * self.top_n top_n_list = sorted(scored_list, key=lambda x: x[1])[top_n_...

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def state_id_generator(size=STATE_ID_LENGTH, chars=string.ascii_uppercase, used_state_ids=None): """ Create a new and unique state id Generates an id for a state. It randomly samples from random ascii uppercase letters size times and concatenates them. If the id already exists it draws a new one. :par...

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def build_attrs(self, *args, **kwargs): """Add select2's tag attributes.""" self.attrs.setdefault('data-minimum-input-length', 1) self.attrs.setdefault('data-tags', 'true') self.attrs.setdefault('data-token-separators', '[",", " "]') return super(Select2TagMixin, self).build_attr...

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def multi_packages(self, logins=None, platform=None, package_type=None, type_=None, access=None): """Return the private packages for a given set of usernames/logins.""" logger.debug('') method = self._multi_packages new_client = True try: # Onl...

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async def get_eventhub_info_async(self): """ Get details on the specified EventHub async. :rtype: dict """ alt_creds = { "username": self._auth_config.get("iot_username"), "password":self._auth_config.get("iot_password")} try: mgmt_aut...

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def camelcase_to_lowercase(camelcase_input, python_input=None): ''' a function to recursively convert data with camelcase key names into lowercase keys :param camelcase_input: list or dictionary with camelcase keys :param python_input: [optional] list or dictionary with default lower...

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def cluster(self, algorithm=None): """Cluster the codebook. The clusters of the data instances can be assigned based on the BMUs. The method populates the class variable Somoclu.clusters. If viewing methods are called after clustering, but without colors for best matching units, colors w...

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def move_into(self, destination_folder): # type: (Folder) -> None """Move the Folder into a different folder. This makes the Folder provided a child folder of the destination_folder. Raises: AuthError: Raised if Outlook returns a 401, generally caused by an invalid or expir...

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def list(payment): """ List all the refunds for a payment. :param payment: The payment object or the payment id :type payment: resources.Payment|string :return: A collection of refunds :rtype resources.APIResourceCollection """ if isinstance(payment, res...

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def _ep_need_close(self): """Peer has closed its end of the session.""" LOG.debug("Session %s close requested - closing...", self._name) links = self._links.copy() # may modify _links for link in links: link._session_closed()

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def save(self, content): """ Save any given content to the instance file. :param content: (str or bytes) :return: (None) """ # backup existing file if needed if os.path.exists(self.file_path) and not self.assume_yes: message = "Overwrite existing {}? (...

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def _outliers(self,x): """ Compute number of outliers """ outliers = self._tukey(x, threshold = 1.5) return np.size(outliers)

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def mtf_bitransformer_all_layers_tiny(): """Test out all the layers on local CPU.""" hparams = mtf_bitransformer_tiny() hparams.moe_num_experts = 4 hparams.moe_expert_x = 4 hparams.moe_expert_y = 4 hparams.moe_hidden_size = 512 hparams.encoder_layers = [ "self_att", "local_self_att", "moe_1d", "moe_...

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def rvalues(self): """ in reversed order """ tmp = self while tmp is not None: yield tmp.data tmp = tmp.prev

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def read_cache(self): """Reads the cached contents into memory. """ if os.path.exists(self._cache_file): self._cache = _read_cache_file(self._cache_file) else: self._cache = {}

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def reweight(self, weight, edges=None, copy=False): '''Replaces existing edge weights. weight may be a scalar or 1d array. edges is a mask or index array that specifies a subset of edges to modify''' if not self.is_weighted(): warnings.warn('Cannot supply weights for unweighted graph; ' ...

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def add_library(self, name): """Add a library to the database This method is for adding a library by name (eg: "BuiltIn") rather than by a file. """ libdoc = LibraryDocumentation(name) if len(libdoc.keywords) > 0: # FIXME: figure out the path to the library f...

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def intersection(self, other): """ Calculates the intersection of the two underlying bitarrays and returns a new bloom filter object.""" if self.capacity != other.capacity or \ self.error_rate != other.error_rate: raise ValueError("Intersecting filters requires both filte...

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def get_agents(self, addr=True, agent_cls=None, as_coro=False): """Get agents from the managed environment. This is a managing function for the :py:meth:`~creamas.environment.Environment.get_agents`. Returned agent list excludes the environment's manager agent (this agent) by de...

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def encode_offset_fetch_request(cls, group, payloads, from_kafka=False): """ Encode an OffsetFetchRequest struct. The request is encoded using version 0 if from_kafka is false, indicating a request for Zookeeper offsets. It is encoded using version 1 otherwise, indicating a request ...

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def _save(self): """ save a JSON file representation of Tetrad Class for checkpoint""" ## save each attribute as dict fulldict = copy.deepcopy(self.__dict__) for i, j in fulldict.items(): if isinstance(j, Params): fulldict[i] = j.__dict__ fulldumps = ...

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def AddKeys(self, key_list): """Mark additional columns as being part of the superkey. Supplements the Keys already extracted from the FSM template. Useful when adding new columns to existing tables. Note: This will impact attempts to further 'extend' the table as the superkey must be common bet...

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def rectwidth(self): """Calculate :ref:`pysynphot-formula-rectw`. Returns ------- ans : float Bandpass rectangular width. """ mywaveunits = self.waveunits.name self.convert('angstroms') wave = self.wave thru = self.throughput ...

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def _send(key, value, metric_type): """Send the specified value to the statsd daemon via UDP without a direct socket connection. :param str value: The properly formatted statsd counter value """ if STATSD_PREFIX: key = '.'.join([STATSD_PREFIX, key]) try: STATSD_SOCKET.sendto('{...

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def save_data(self, filename=None): """Save data""" if filename is None: filename = self.filename if filename is None: filename = getcwd_or_home() filename, _selfilter = getsavefilename(self, _("Save data"), ...

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def get_image_tags(self): """ Fetches image labels (repository / tags) from Docker. :return: A dictionary, with image name and tags as the key and the image id as value. :rtype: dict """ current_images = self.images() tags = {tag: i['Id'] for i in current_images ...

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def blow_out(self, location=None): """ Force any remaining liquid to dispense, by moving this pipette's plunger to the calibrated `blow_out` position Notes ----- If no `location` is passed, the pipette will blow_out from it's current position. Parameters...

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def aes_b64_encrypt(value, secret, block_size=AES.block_size): """ AES encrypt @value with @secret using the |CFB| mode of AES with a cryptographically secure initialization vector. -> (#str) AES encrypted @value .. from vital.security import aes_encrypt, aes_decrypt ...

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