kejian/codesearchnet-python-rebalanced · Datasets at Hugging Face

text stringlengths 75 104k	code_tokens list	avg_line_len float64 7.91 980	score float64 0 0.18
def _serialize_xml(self, root): """Serialize XML data into string It serializes the dynamic xml created and converts it to a string. This is done before sending the xml to the ILO. :param root: root of the dynamic xml. """ if hasattr(etree, 'tostringlist'): ...	[ "def", "_serialize_xml", "(", "self", ",", "root", ")", ":", "if", "hasattr", "(", "etree", ",", "'tostringlist'", ")", ":", "if", "six", ".", "PY3", ":", "xml_content_list", "=", "[", "x", ".", "decode", "(", "\"utf-8\"", ")", "for", "x", "in", "etr...	33.083333	0.002448
def to_json(model, sort=False, **kwargs): """ Return the model as a JSON document. ``kwargs`` are passed on to ``json.dumps``. Parameters ---------- model : cobra.Model The cobra model to represent. sort : bool, optional Whether to sort the metabolites, reactions, and genes...	[ "def", "to_json", "(", "model", ",", "sort", "=", "False", ",", "", "", "kwargs", ")", ":", "obj", "=", "model_to_dict", "(", "model", ",", "sort", "=", "sort", ")", "obj", "[", "u\"version\"", "]", "=", "JSON_SPEC", "return", "json", ".", "dumps",...	25.592593	0.001395
def bytes_to_string(data, headers, *_): """Convert all data* and headers bytes to strings. Binary data that cannot be decoded is converted to a hexadecimal representation via :func:`binascii.hexlify`. :param iterable data: An :term:`iterable` (e.g. list) of rows. :param iterable headers: The c...	[ "def", "bytes_to_string", "(", "data", ",", "headers", ",", "", "", "_", ")", ":", "return", "(", "(", "[", "utils", ".", "bytes_to_string", "(", "v", ")", "for", "v", "in", "row", "]", "for", "row", "in", "data", ")", ",", "[", "utils", ".", ...	37.214286	0.001873
def _get_asym_hel(self,d): """ Find the asymmetry of each helicity. """ # get data 1+ 2+ 1- 2- d0 = d[0]; d1 = d[2]; d2 = d[1]; d3 = d[3] # pre-calcs denom1 = d0+d1; denom2 = d2+d3 # check for div by zero denom1[den...	[ "def", "_get_asym_hel", "(", "self", ",", "d", ")", ":", "# get data 1+ 2+ 1- 2-", "d0", "=", "d", "[", "0", "]", "d1", "=", "d", "[", "2", "]", "d2", "=", "d", "[", "1", "]", "d3", "=", "d", "[", "3", "]", "# pre-calcs", "denom1", "=", "d0", ...	34.545455	0.020478
def flatten_dictionary(nested_dict, separator): """Flattens a nested dictionary. New keys are concatenations of nested keys with the `separator` in between. """ flat_dict = {} for key, val in nested_dict.items(): if isinstance(val, dict): new_flat_dict = flatten_dictionary(val,...	[ "def", "flatten_dictionary", "(", "nested_dict", ",", "separator", ")", ":", "flat_dict", "=", "{", "}", "for", "key", ",", "val", "in", "nested_dict", ".", "items", "(", ")", ":", "if", "isinstance", "(", "val", ",", "dict", ")", ":", "new_flat_dict", ...	31.647059	0.001805
def bisect(f, a, b, args=(), xtol=_xtol, rtol=_rtol, maxiter=_iter, disp=True): """ Find root of a function within an interval adapted from Scipy's bisect. Basic bisection routine to find a zero of the function `f` between the arguments `a` and `b`. `f(a)` and `f(b)` cannot have the same sig...	[ "def", "bisect", "(", "f", ",", "a", ",", "b", ",", "args", "=", "(", ")", ",", "xtol", "=", "_xtol", ",", "rtol", "=", "_rtol", ",", "maxiter", "=", "_iter", ",", "disp", "=", "True", ")", ":", "if", "xtol", "<=", "0", ":", "raise", "ValueEr...	29.24359	0.000424
def make_postcard(self, npix=300, shape=(1070, 1132), buffer_size=15): """ Develop a "postcard" region around the target star. Other stars in this postcard will be used as possible reference stars. Args: npix: The size of the postcard region. The region will be a sq...	[ "def", "make_postcard", "(", "self", ",", "npix", "=", "300", ",", "shape", "=", "(", "1070", ",", "1132", ")", ",", "buffer_size", "=", "15", ")", ":", "source", "=", "self", ".", "kic", "client", "=", "kplr", ".", "API", "(", ")", "targ", "=", ...	36.747126	0.013402
def generate_hash(data, algorithm='chd_ph', hash_fns=(), chd_keys_per_bin=1, chd_load_factor=None, fch_bits_per_key=None, num_graph_vertices=None, brz_memory_size=8, brz_temp_dir=None, brz_max_keys_per_bucket=128, bdz_precomputed_rank=7, chd_avg_ke...	[ "def", "generate_hash", "(", "data", ",", "algorithm", "=", "'chd_ph'", ",", "hash_fns", "=", "(", ")", ",", "chd_keys_per_bin", "=", "1", ",", "chd_load_factor", "=", "None", ",", "fch_bits_per_key", "=", "None", ",", "num_graph_vertices", "=", "None", ",",...	44.477778	0.000122
def _get_m2m_field(model, sender): """ Get the field name from a model and a sender from m2m_changed signal. """ for field in getattr(model, '_tracked_fields', []): if isinstance(model._meta.get_field(field), ManyToManyField): if getattr(model, field).through == sender: ...	[ "def", "_get_m2m_field", "(", "model", ",", "sender", ")", ":", "for", "field", "in", "getattr", "(", "model", ",", "'_tracked_fields'", ",", "[", "]", ")", ":", "if", "isinstance", "(", "model", ".", "_meta", ".", "get_field", "(", "field", ")", ",", ...	45.833333	0.001783
def drag_sphere(Re, Method=None, AvailableMethods=False): r'''This function handles calculation of drag coefficient on spheres. Twenty methods are available, all requiring only the Reynolds number of the sphere. Most methods are valid from Re=0 to Re=200,000. A correlation will be automatically selected...	[ "def", "drag_sphere", "(", "Re", ",", "Method", "=", "None", ",", "AvailableMethods", "=", "False", ")", ":", "def", "list_methods", "(", ")", ":", "methods", "=", "[", "]", "for", "key", ",", "(", "func", ",", "Re_min", ",", "Re_max", ")", "in", "...	37.648649	0.001399
def _get_parent_timestamp(dirname, mtime): """ Get the timestamps up the directory tree. All the way to root. Because they affect every subdirectory. """ parent_pathname = os.path.dirname(dirname) # max between the parent timestamp the one passed in mtime = _max_timestamps(parent_pathname,...	[ "def", "_get_parent_timestamp", "(", "dirname", ",", "mtime", ")", ":", "parent_pathname", "=", "os", ".", "path", ".", "dirname", "(", "dirname", ")", "# max between the parent timestamp the one passed in", "mtime", "=", "_max_timestamps", "(", "parent_pathname", ","...	31.6875	0.001916
def after(self, value): """ Sets the operator type to Query.Op.After and sets the value to the amount that this query should be lower than. This is functionally the same as doing the lessThan operation, but is useful for visual queries for things like dates. :p...	[ "def", "after", "(", "self", ",", "value", ")", ":", "newq", "=", "self", ".", "copy", "(", ")", "newq", ".", "setOp", "(", "Query", ".", "Op", ".", "After", ")", "newq", ".", "setValue", "(", "value", ")", "return", "newq" ]	35.2	0.008299
def store_traces(self, value): """ Setter for _store_traces. _store_traces controls in memory storing of received lines. Also logs the change for the user. :param value: Boolean :return: Nothing """ if not value: self.logger.debug("Stopping storing re...	[ "def", "store_traces", "(", "self", ",", "value", ")", ":", "if", "not", "value", ":", "self", ".", "logger", ".", "debug", "(", "\"Stopping storing received lines for dut %d\"", ",", "self", ".", "index", ")", "self", ".", "_store_traces", "=", "False", "el...	37.357143	0.009328
def SpamsumDistance(ssA, ssB): ''' returns the spamsum distance between ssA and ssB if they use a different block size, assume maximum distance otherwise returns the LevDistance ''' mA = re.match('^(\d+)[:](.)$', ssA) mB = re.match('^(\d+)[:](.)$', ssB) if mA == None or mB == None: ...	[ "def", "SpamsumDistance", "(", "ssA", ",", "ssB", ")", ":", "mA", "=", "re", ".", "match", "(", "'^(\\d+)[:](.)$'", ",", "ssA", ")", "mB", "=", "re", ".", "match", "(", "'^(\\d+)[:](.)$'", ",", "ssB", ")", "if", "mA", "==", "None", "or", "mB", "=...	31.6875	0.015326
def get(self, param, default=EMPTY): """ Returns the nparam value, and returns the default if it doesn't exist. If default is none, an exception will be raised instead. the returned parameter will have been specialized against the global context """ if not self.has(param...	[ "def", "get", "(", "self", ",", "param", ",", "default", "=", "EMPTY", ")", ":", "if", "not", "self", ".", "has", "(", "param", ")", ":", "if", "default", "is", "not", "EMPTY", ":", "return", "default", "raise", "ParamNotFoundException", "(", "\"value ...	45.714286	0.00204
def ttr(self, kloc, acc=10**3, verbose=1): """ Three terms relation's coefficient generator Args: k (numpy.ndarray, int): The order of the coefficients. acc (int): Accuracy of discretized Stieltjes if analytical methods are ...	[ "def", "ttr", "(", "self", ",", "kloc", ",", "acc", "=", "10", "**", "3", ",", "verbose", "=", "1", ")", ":", "kloc", "=", "numpy", ".", "asarray", "(", "kloc", ",", "dtype", "=", "int", ")", "shape", "=", "kloc", ".", "shape", "kloc", "=", "...	34.125	0.002375
def count_alleles(self, max_allele=None, subpop=None): """Count the number of calls of each allele per variant. Parameters ---------- max_allele : int, optional The highest allele index to count. Alleles greater than this index will be ignored. subpop : a...	[ "def", "count_alleles", "(", "self", ",", "max_allele", "=", "None", ",", "subpop", "=", "None", ")", ":", "# check inputs", "subpop", "=", "_normalize_subpop_arg", "(", "subpop", ",", "self", ".", "shape", "[", "1", "]", ")", "# determine alleles to count", ...	28.531915	0.002163
def neg(self): """Negative value of all components.""" self.x = -self.x self.y = -self.y self.z = -self.z	[ "def", "neg", "(", "self", ")", ":", "self", ".", "x", "=", "-", "self", ".", "x", "self", ".", "y", "=", "-", "self", ".", "y", "self", ".", "z", "=", "-", "self", ".", "z" ]	26.6	0.014599
def _get_axis_mode(self, axis): "will get the axis mode for the current series" if all([isinstance(getattr(s, axis), TimeVariable) for s in self._series]): return 'time' return None	[ "def", "_get_axis_mode", "(", "self", ",", "axis", ")", ":", "if", "all", "(", "[", "isinstance", "(", "getattr", "(", "s", ",", "axis", ")", ",", "TimeVariable", ")", "for", "s", "in", "self", ".", "_series", "]", ")", ":", "return", "'time'", "re...	42.6	0.013825
def cluster_nodes(self): """Each node in a Redis Cluster has its view of the current cluster configuration, given by the set of known nodes, the state of the connection we have with such nodes, their flags, properties and assigned slots, and so forth. ``CLUSTER NODES`` provides ...	[ "def", "cluster_nodes", "(", "self", ")", ":", "def", "format_response", "(", "result", ")", ":", "values", "=", "[", "]", "for", "row", "in", "result", ".", "decode", "(", "'utf-8'", ")", ".", "split", "(", "'\\n'", ")", ":", "if", "not", "row", "...	45.319149	0.000919
def set_done(self): """ set_done: records progress after Ricecooker process has been completed Args: None Returns: None """ self.__record_progress(Status.DONE) # Delete restoration point for last step to indicate process has been completed os.remove(self....	[ "def", "set_done", "(", "self", ")", ":", "self", ".", "__record_progress", "(", "Status", ".", "DONE", ")", "# Delete restoration point for last step to indicate process has been completed", "os", ".", "remove", "(", "self", ".", "get_restore_path", "(", "Status", "....	38	0.011429
def _load_11_6(self, kwargs): """Must check if rule actually exists before proceeding with load.""" if self._check_existence_by_collection(self._meta_data['container'], kwargs['name']): return super(Protocol_Sip, self)._load(kwargs) msg = 'The application resource named, {}, does...	[ "def", "_load_11_6", "(", "self", ",", "", "", "kwargs", ")", ":", "if", "self", ".", "_check_existence_by_collection", "(", "self", ".", "_meta_data", "[", "'container'", "]", ",", "kwargs", "[", "'name'", "]", ")", ":", "return", "super", "(", "Proto...	53.111111	0.00823
def _task_to_dict(task): """Converts a WorkQueue to a JSON-able dictionary.""" payload = task.payload if payload and task.content_type == 'application/json': payload = json.loads(payload) return dict( task_id=task.task_id, queue_name=task.queue_name, eta=_datetime_to_epo...	[ "def", "_task_to_dict", "(", "task", ")", ":", "payload", "=", "task", ".", "payload", "if", "payload", "and", "task", ".", "content_type", "==", "'application/json'", ":", "payload", "=", "json", ".", "loads", "(", "payload", ")", "return", "dict", "(", ...	36.5625	0.001667
def decompose_code(code): """ Decomposes a MARC "code" into tag, ind1, ind2, subcode """ code = "%-6s" % code ind1 = code[3:4] if ind1 == " ": ind1 = "_" ind2 = code[4:5] if ind2 == " ": ind2 = "_" subcode = code[5:6] if subcode == " ": subcode = None return (code[0:3], ind1,...	[ "def", "decompose_code", "(", "code", ")", ":", "code", "=", "\"%-6s\"", "%", "code", "ind1", "=", "code", "[", "3", ":", "4", "]", "if", "ind1", "==", "\" \"", ":", "ind1", "=", "\"_\"", "ind2", "=", "code", "[", "4", ":", "5", "]", "if", "ind...	27	0.01194
def send(self, msg): """Send `data` to `handle`, and tell the broker we have output. May be called from any thread.""" self._router.broker.defer(self._send, msg)	[ "def", "send", "(", "self", ",", "msg", ")", ":", "self", ".", "_router", ".", "broker", ".", "defer", "(", "self", ".", "_send", ",", "msg", ")" ]	45.5	0.010811
def _verifyReturnToArgs(query): """Verify that the arguments in the return_to URL are present in this response. """ message = Message.fromPostArgs(query) return_to = message.getArg(OPENID_NS, 'return_to') if return_to is None: raise ProtocolError('Response ha...	[ "def", "_verifyReturnToArgs", "(", "query", ")", ":", "message", "=", "Message", ".", "fromPostArgs", "(", "query", ")", "return_to", "=", "message", ".", "getArg", "(", "OPENID_NS", ",", "'return_to'", ")", "if", "return_to", "is", "None", ":", "raise", "...	40.258065	0.002347
def set_margins(self, top=None, bottom=None): """Select top and bottom margins for the scrolling region. :param int top: the smallest line number that is scrolled. :param int bottom: the biggest line number that is scrolled. """ # XXX 0 corresponds to the CSI with no parameters....	[ "def", "set_margins", "(", "self", ",", "top", "=", "None", ",", "bottom", "=", "None", ")", ":", "# XXX 0 corresponds to the CSI with no parameters.", "if", "(", "top", "is", "None", "or", "top", "==", "0", ")", "and", "bottom", "is", "None", ":", "self",...	40.176471	0.00143
def process(self, salt_data, token, opts): ''' Process events and publish data ''' parts = salt_data['tag'].split('/') if len(parts) < 2: return # TBD: Simplify these conditional expressions if parts[1] == 'job': if parts[3] == 'new': ...	[ "def", "process", "(", "self", ",", "salt_data", ",", "token", ",", "opts", ")", ":", "parts", "=", "salt_data", "[", "'tag'", "]", ".", "split", "(", "'/'", ")", "if", "len", "(", "parts", ")", "<", "2", ":", "return", "# TBD: Simplify these condition...	38	0.002334
def setCovariance(self, cov): """ makes lowrank approximation of cov """ assert cov.shape[0]==self.dim, 'Dimension mismatch.' S, U = la.eigh(cov) U = U[:,::-1] S = S[::-1] _X = U[:, :self.rank] * sp.sqrt(S[:self.rank]) self.X = _X	[ "def", "setCovariance", "(", "self", ",", "cov", ")", ":", "assert", "cov", ".", "shape", "[", "0", "]", "==", "self", ".", "dim", ",", "'Dimension mismatch.'", "S", ",", "U", "=", "la", ".", "eigh", "(", "cov", ")", "U", "=", "U", "[", ":", ",...	34.875	0.013986
def requote_uri(uri): """Re-quote the given URI. This function passes the given URI through an unquote/quote cycle to ensure that it is fully and consistently quoted. :rtype: str """ safe_with_percent = "!#$%&'()+,/:;=?@[]~" safe_without_percent = "!#$&'()+,/:;=?@[]~" try: # Un...	[ "def", "requote_uri", "(", "uri", ")", ":", "safe_with_percent", "=", "\"!#$%&'()+,/:;=?@[]~\"", "safe_without_percent", "=", "\"!#$&'()+,/:;=?@[]~\"", "try", ":", "# Unquote only the unreserved characters", "# Then quote only illegal characters (do not quote reserved,", "# unreser...	44.5	0.001222
def main() -> None: """ Command-line processor. See ``--help`` for details. """ main_only_quicksetup_rootlogger() wdcd_suffix = "_with_drop_create_database" timeformat = "%Y%m%dT%H%M%S" parser = argparse.ArgumentParser( description=""" Back up a specific MySQL database. The r...	[ "def", "main", "(", ")", "->", "None", ":", "main_only_quicksetup_rootlogger", "(", ")", "wdcd_suffix", "=", "\"_with_drop_create_database\"", "timeformat", "=", "\"%Y%m%dT%H%M%S\"", "parser", "=", "argparse", ".", "ArgumentParser", "(", "description", "=", "\"\"\"\n ...	39.959184	0.000249
def _write_scalar(self, name:str, scalar_value, iteration:int)->None: "Writes single scalar value to Tensorboard." tag = self.metrics_root + name self.tbwriter.add_scalar(tag=tag, scalar_value=scalar_value, global_step=iteration)	[ "def", "_write_scalar", "(", "self", ",", "name", ":", "str", ",", "scalar_value", ",", "iteration", ":", "int", ")", "->", "None", ":", "tag", "=", "self", ".", "metrics_root", "+", "name", "self", ".", "tbwriter", ".", "add_scalar", "(", "tag", "=", ...	62.5	0.023715
def Tags(self): """Return all tags found in the value stream. Returns: A `{tagType: ['list', 'of', 'tags']}` dictionary. """ return { IMAGES: self.images.Keys(), AUDIO: self.audios.Keys(), HISTOGRAMS: self.histograms.Keys(), SCALARS: self.scalars.Keys(), CO...	[ "def", "Tags", "(", "self", ")", ":", "return", "{", "IMAGES", ":", "self", ".", "images", ".", "Keys", "(", ")", ",", "AUDIO", ":", "self", ".", "audios", ".", "Keys", "(", ")", ",", "HISTOGRAMS", ":", "self", ".", "histograms", ".", "Keys", "("...	35.947368	0.001427
def destroy(name, stop=False, path=None): ''' Destroy the named container. .. warning:: Destroys all data associated with the container. path path to the container parent directory (default: /var/lib/lxc) .. versionadded:: 2015.8.0 stop : False If ``True``, the c...	[ "def", "destroy", "(", "name", ",", "stop", "=", "False", ",", "path", "=", "None", ")", ":", "_ensure_exists", "(", "name", ",", "path", "=", "path", ")", "if", "not", "stop", "and", "state", "(", "name", ",", "path", "=", "path", ")", "!=", "'s...	29.388889	0.000915
def pypy_version_monkeypatch(): """Patch Tox to work with non-default PyPy 3 versions.""" # Travis virtualenv do not provide `pypy3`, which tox tries to execute. # This doesnt affect Travis python version `pypy3`, as the pyenv pypy3 # is in the PATH. # https://github.com/travis-ci/travis-ci/issues/6...	[ "def", "pypy_version_monkeypatch", "(", ")", ":", "# Travis virtualenv do not provide `pypy3`, which tox tries to execute.", "# This doesnt affect Travis python version `pypy3`, as the pyenv pypy3", "# is in the PATH.", "# https://github.com/travis-ci/travis-ci/issues/6304", "# Force use of the vi...	52.7	0.001866
def handle(self): """Handles the real time update of some code from the cached representation of the module. """ #If we have more statements in the buffer than the cached, it doesn't matter, #we just run the first few replacements of the cache concurrently and do #what'...	[ "def", "handle", "(", "self", ")", ":", "#If we have more statements in the buffer than the cached, it doesn't matter, ", "#we just run the first few replacements of the cache concurrently and do ", "#what's left over from the buffer.", "#REVIEW", "if", "self", ".", "mode", "==", "\"in...	44	0.013589
def face_colors(self, values): """ Set the colors for each face of a mesh. This will apply these colors and delete any previously specified color information. Parameters ------------ colors: (len(mesh.faces), 3), set each face to the specified color ...	[ "def", "face_colors", "(", "self", ",", "values", ")", ":", "if", "values", "is", "None", ":", "if", "'face_colors'", "in", "self", ".", "_data", ":", "self", ".", "_data", ".", "data", ".", "pop", "(", "'face_colors'", ")", "return", "colors", "=", ...	32.666667	0.001982
def create_configuration(raid_config): """Create a RAID configuration on this server. This method creates the given RAID configuration on the server based on the input passed. :param raid_config: The dictionary containing the requested RAID configuration. This data structure should be as follow...	[ "def", "create_configuration", "(", "raid_config", ")", ":", "server", "=", "objects", ".", "Server", "(", ")", "select_controllers", "=", "lambda", "x", ":", "not", "x", ".", "properties", ".", "get", "(", "'HBA Mode Enabled'", ",", "False", ")", "_select_c...	44.224299	0.000413
def _pyside2(): """Initialise PySide2 These functions serve to test the existence of a binding along with set it up in such a way that it aligns with the final step; adding members from the original binding to Qt.py """ import PySide2 as module _setup(module, ["QtUiTools"]) Qt.__...	[ "def", "_pyside2", "(", ")", ":", "import", "PySide2", "as", "module", "_setup", "(", "module", ",", "[", "\"QtUiTools\"", "]", ")", "Qt", ".", "__binding_version__", "=", "module", ".", "__version__", "try", ":", "try", ":", "# Before merge of PySide and shib...	28.978723	0.00071
def download(client, target_dir): """Download listing files from play and saves them into folder herachy.""" print('') print('download store listings') print('---------------------') listings = client.list('listings') for listing in listings: path = os.path.join(target_dir, 'listings', l...	[ "def", "download", "(", "client", ",", "target_dir", ")", ":", "print", "(", "''", ")", "print", "(", "'download store listings'", ")", "print", "(", "'---------------------'", ")", "listings", "=", "client", ".", "list", "(", "'listings'", ")", "for", "list...	43.714286	0.0016
def _apply_color(code, content): """ Apply a color code to text """ normal = u'\x1B[0m' seq = u'\x1B[%sm' % code # Replace any normal sequences with this sequence to support nested colors return seq + (normal + seq).join(content.split(normal)) + normal	[ "def", "_apply_color", "(", "code", ",", "content", ")", ":", "normal", "=", "u'\\x1B[0m'", "seq", "=", "u'\\x1B[%sm'", "%", "code", "# Replace any normal sequences with this sequence to support nested colors", "return", "seq", "+", "(", "normal", "+", "seq", ")", "...	30.1	0.009677
def calcparams_desoto(self, effective_irradiance, temp_cell, **kwargs): """ Use the :py:func:`calcparams_desoto` function, the input parameters and ``self.module_parameters`` to calculate the module currents and resistances. Parameters ---------- effective_irradi...	[ "def", "calcparams_desoto", "(", "self", ",", "effective_irradiance", ",", "temp_cell", ",", "", "", "kwargs", ")", ":", "kwargs", "=", "_build_kwargs", "(", "[", "'a_ref'", ",", "'I_L_ref'", ",", "'I_o_ref'", ",", "'R_sh_ref'", ",", "'R_s'", ",", "'alpha_...	35.321429	0.001969
def loadDolfin(filename, c="gold", alpha=0.5, wire=None, bc=None): """Reads a `Fenics/Dolfin` file format. Return an ``Actor(vtkActor)`` object.""" if not os.path.exists(filename): colors.printc("~noentry Error in loadDolfin: Cannot find", filename, c=1) return None import xml.etree.ElementT...	[ "def", "loadDolfin", "(", "filename", ",", "c", "=", "\"gold\"", ",", "alpha", "=", "0.5", ",", "wire", "=", "None", ",", "bc", "=", "None", ")", ":", "if", "not", "os", ".", "path", ".", "exists", "(", "filename", ")", ":", "colors", ".", "print...	34.816327	0.00171
def clear_imgs(self) -> None: "Clear the widget's images preview pane." self._preview_header.value = self._heading self._img_pane.children = tuple()	[ "def", "clear_imgs", "(", "self", ")", "->", "None", ":", "self", ".", "_preview_header", ".", "value", "=", "self", ".", "_heading", "self", ".", "_img_pane", ".", "children", "=", "tuple", "(", ")" ]	42.25	0.011628
def random_word(self, length, prefix=0, start=False, end=False, flatten=False): """ Generate a random word of length from this table. :param length: the length of the generated word; >= 1; :param prefix: if greater than 0, the maximum length of the prefix to ...	[ "def", "random_word", "(", "self", ",", "length", ",", "prefix", "=", "0", ",", "start", "=", "False", ",", "end", "=", "False", ",", "flatten", "=", "False", ")", ":", "if", "start", ":", "word", "=", "\">\"", "length", "+=", "1", "return", "self"...	47.172414	0.002149
def rouge_l_sentence_level(evaluated_sentences, reference_sentences): """ Computes ROUGE-L (sentence level) of two text collections of sentences. http://research.microsoft.com/en-us/um/people/cyl/download/papers/ rouge-working-note-v1.3.1.pdf Calculated according to: R_lcs = LCS(X,Y)/m P_lc...	[ "def", "rouge_l_sentence_level", "(", "evaluated_sentences", ",", "reference_sentences", ")", ":", "if", "len", "(", "evaluated_sentences", ")", "<=", "0", "or", "len", "(", "reference_sentences", ")", "<=", "0", ":", "raise", "(", "ValueError", "(", "\"Collecti...	37.0625	0.000822
def pkg_blacklist(self): """Manage blacklist packages """ blacklist = BlackList() options = [ "-b", "--blacklist" ] flag = [ "--add", "--remove" ] command = ["list"] if (len(self.args) == 2 and self.a...	[ "def", "pkg_blacklist", "(", "self", ")", ":", "blacklist", "=", "BlackList", "(", ")", "options", "=", "[", "\"-b\"", ",", "\"--blacklist\"", "]", "flag", "=", "[", "\"--add\"", ",", "\"--remove\"", "]", "command", "=", "[", "\"list\"", "]", "if", "(", ...	33.7	0.001923
def _latex_item_to_string(item, *, escape=False, as_content=False): """Use the render method when possible, otherwise uses str. Args ---- item: object An object that needs to be converted to a string escape: bool Flag that indicates if escaping is needed as_content: bool ...	[ "def", "_latex_item_to_string", "(", "item", ",", "*", ",", "escape", "=", "False", ",", "as_content", "=", "False", ")", ":", "if", "isinstance", "(", "item", ",", "pylatex", ".", "base_classes", ".", "LatexObject", ")", ":", "if", "as_content", ":", "r...	23.903226	0.001297
def datacenter(self, name): """ :param name: location key :type name: :py:class:`basestring` :Returns: a new DataCenter object This method treats the 'name' argument as a location key (on the `known_locations` attribute dict) or FQDN, and keeps existing...	[ "def", "datacenter", "(", "self", ",", "name", ")", ":", "# The base form of this, as below, simply sets up a redirect. ", "# j, _ = self.request('GET', 'datacenters/' + str(name))", "if", "name", "not", "in", "self", ".", "known_locations", "and", "'.'", "not", "in", "name...	42.9	0.012543
def values(self): """Returns a list of all values in the dictionary. Returns: list of str: [value1,value2,...,valueN] """ all_values = [v.decode('utf-8') for k,v in self.rdb.hgetall(self.session_hash).items()] return all_values	[ "def", "values", "(", "self", ")", ":", "all_values", "=", "[", "v", ".", "decode", "(", "'utf-8'", ")", "for", "k", ",", "v", "in", "self", ".", "rdb", ".", "hgetall", "(", "self", ".", "session_hash", ")", ".", "items", "(", ")", "]", "return",...	34.125	0.014286
def get(self, key, default=None): """ Gets @key from :prop:key_prefix, defaulting to @default """ try: return self[key] except KeyError: return default or self._default	[ "def", "get", "(", "self", ",", "key", ",", "default", "=", "None", ")", ":", "try", ":", "return", "self", "[", "key", "]", "except", "KeyError", ":", "return", "default", "or", "self", ".", "_default" ]	35.166667	0.009259
def document_is_multiline_python(document): """ Determine whether this is a multiline Python document. """ def ends_in_multiline_string(): """ ``True`` if we're inside a multiline string at the end of the text. """ delims = _multiline_string_delims.findall(document.text) ...	[ "def", "document_is_multiline_python", "(", "document", ")", ":", "def", "ends_in_multiline_string", "(", ")", ":", "\"\"\"\n ``True`` if we're inside a multiline string at the end of the text.\n \"\"\"", "delims", "=", "_multiline_string_delims", ".", "findall", "(",...	32.527778	0.001658
def _check_open_dir(self, fs, path, info): # type: (FS, Text, Info) -> bool """Check if a directory should be considered in the walk. """ if self.exclude_dirs is not None and fs.match(self.exclude_dirs, info.name): return False if self.filter_dirs is not None and not ...	[ "def", "_check_open_dir", "(", "self", ",", "fs", ",", "path", ",", "info", ")", ":", "# type: (FS, Text, Info) -> bool", "if", "self", ".", "exclude_dirs", "is", "not", "None", "and", "fs", ".", "match", "(", "self", ".", "exclude_dirs", ",", "info", ".",...	47.333333	0.011521
def info(self): """Execute an HTTP request to get details on a queue, and return it. """ url = "queues/%s" % (self.name,) result = self.client.get(url) return result['body']['queue']	[ "def", "info", "(", "self", ")", ":", "url", "=", "\"queues/%s\"", "%", "(", "self", ".", "name", ",", ")", "result", "=", "self", ".", "client", ".", "get", "(", "url", ")", "return", "result", "[", "'body'", "]", "[", "'queue'", "]" ]	28	0.008658
def _add_job_from_spec(self, job_json, use_job_id=True): """ Add a single job to the Dagobah from a spec. """ job_id = (job_json['job_id'] if use_job_id else self.backend.get_new_job_id()) self.add_job(str(job_json['name']), job_id) job = self.get_job...	[ "def", "_add_job_from_spec", "(", "self", ",", "job_json", ",", "use_job_id", "=", "True", ")", ":", "job_id", "=", "(", "job_json", "[", "'job_id'", "]", "if", "use_job_id", "else", "self", ".", "backend", ".", "get_new_job_id", "(", ")", ")", "self", "...	43.423077	0.001733
def _steal_content(self, other_page): """ Call ImgDoc.steal_page() instead """ other_doc = other_page.doc other_doc_pages = other_doc.pages[:] other_doc_nb_pages = other_doc.nb_pages other_page_nb = other_page.page_nb to_move = [ (other_page._...	[ "def", "_steal_content", "(", "self", ",", "other_page", ")", ":", "other_doc", "=", "other_page", ".", "doc", "other_doc_pages", "=", "other_doc", ".", "pages", "[", ":", "]", "other_doc_nb_pages", "=", "other_doc", ".", "nb_pages", "other_page_nb", "=", "oth...	35.896552	0.001871
def get_last_documents(self): """Return the most recently parsed list of ``Documents``. :rtype: A list of the most recently parsed ``Documents`` ordered by name. """ return ( self.session.query(Document) .filter(Document.name.in_(self.last_docs)) .ord...	[ "def", "get_last_documents", "(", "self", ")", ":", "return", "(", "self", ".", "session", ".", "query", "(", "Document", ")", ".", "filter", "(", "Document", ".", "name", ".", "in_", "(", "self", ".", "last_docs", ")", ")", ".", "order_by", "(", "Do...	32.636364	0.00813
def get_token_status(token, serializer, max_age=None, return_data=False): """Get the status of a token. :param token: The token to check :param serializer: The name of the seriailzer. Can be one of the following: ``confirm``, ``login``, ``reset`` :param max_age: The name of the m...	[ "def", "get_token_status", "(", "token", ",", "serializer", ",", "max_age", "=", "None", ",", "return_data", "=", "False", ")", ":", "serializer", "=", "getattr", "(", "_security", ",", "serializer", "+", "'_serializer'", ")", "max_age", "=", "get_max_age", ...	33.09375	0.000917
def get_mailcap_entry(self, url): """ Search through the mime handlers list and attempt to find the appropriate command to open the provided url with. Will raise a MailcapEntryNotFound exception if no valid command exists. Params: url (text): URL that will be checke...	[ "def", "get_mailcap_entry", "(", "self", ",", "url", ")", ":", "for", "parser", "in", "mime_parsers", ".", "parsers", ":", "if", "parser", ".", "pattern", ".", "match", "(", "url", ")", ":", "# modified_url may be the same as the original url, but it", "# could al...	44.957447	0.00139
def asgate(self) -> Gate: """ Return the action of this circuit as a gate """ gate = identity_gate(self.qubits) for elem in self.elements: gate = elem.asgate() @ gate return gate	[ "def", "asgate", "(", "self", ")", "->", "Gate", ":", "gate", "=", "identity_gate", "(", "self", ".", "qubits", ")", "for", "elem", "in", "self", ".", "elements", ":", "gate", "=", "elem", ".", "asgate", "(", ")", "@", "gate", "return", "gate" ]	28.875	0.008403
def _process_interaction(self, source_id, interaction, text, pmid, extra_annotations): """Process an interaction JSON tuple from the ISI output, and adds up to one statement to the list of extracted statements. Parameters ---------- source_id : str ...	[ "def", "_process_interaction", "(", "self", ",", "source_id", ",", "interaction", ",", "text", ",", "pmid", ",", "extra_annotations", ")", ":", "verb", "=", "interaction", "[", "0", "]", ".", "lower", "(", ")", "subj", "=", "interaction", "[", "-", "2", ...	43.715909	0.000763
def find_rings(self, including=None): """ Find ring structures in the MoleculeGraph. :param including: list of site indices. If including is not None, then find_rings will only return those rings including the specified sites. By default, this parameter is None, and ...	[ "def", "find_rings", "(", "self", ",", "including", "=", "None", ")", ":", "# Copies self.graph such that all edges (u, v) matched by edges (v, u)", "undirected", "=", "self", ".", "graph", ".", "to_undirected", "(", ")", "directed", "=", "undirected", ".", "to_direct...	35.469388	0.00112
def get_user_stats_for_game(self, steamID, appID, format=None): """Request the user stats for a given game. steamID: The users ID appID: The app id format: Return format. None defaults to json. (json, xml, vdf) """ parameters = {'steamid' : steamID, 'appid' : appID} ...	[ "def", "get_user_stats_for_game", "(", "self", ",", "steamID", ",", "appID", ",", "format", "=", "None", ")", ":", "parameters", "=", "{", "'steamid'", ":", "steamID", ",", "'appid'", ":", "appID", "}", "if", "format", "is", "not", "None", ":", "paramete...	38.266667	0.008503
def link(self, oldpath, newpath, dir_fd=None): """Create a hard link at new_path, pointing at old_path. Args: oldpath: An existing link to the target file. newpath: The destination path to create a new link at. dir_fd: If not `None`, the file descriptor of a director...	[ "def", "link", "(", "self", ",", "oldpath", ",", "newpath", ",", "dir_fd", "=", "None", ")", ":", "oldpath", "=", "self", ".", "_path_with_dir_fd", "(", "oldpath", ",", "self", ".", "link", ",", "dir_fd", ")", "self", ".", "filesystem", ".", "link", ...	40.15	0.002433
def run(self): """ Called by the process, it runs it. NEVER call this method directly. Instead call start() to start the separate process. If you don't want to use a second process, then call fetch() directly on this istance. To stop, call terminate() """ if not self._q...	[ "def", "run", "(", "self", ")", ":", "if", "not", "self", ".", "_queue", ":", "raise", "Exception", "(", "\"No queue available to send messages\"", ")", "while", "True", ":", "self", ".", "fetch", "(", ")", "time", ".", "sleep", "(", "self", ".", "_pause...	32.928571	0.008439
def plot_fullcalib(dio_cross,feedtype='l',**kwargs): ''' Generates and shows five plots: Uncalibrated diode, calibrated diode, fold information, phase offsets, and gain offsets for a noise diode measurement. Most useful diagnostic plot to make sure calibration proceeds correctly. ''' plt.figure...	[ "def", "plot_fullcalib", "(", "dio_cross", ",", "feedtype", "=", "'l'", ",", "", "", "kwargs", ")", ":", "plt", ".", "figure", "(", "\"Multiple Calibration Plots\"", ",", "figsize", "=", "(", "12", ",", "9", ")", ")", "left", ",", "width", "=", "0.07...	37.469388	0.032378
def callback(self, name, before=None, after=None): """Add a callback pair to this spectator. You can specify, with keywords, whether each callback should be triggered before, and/or or after a given method is called - hereafter refered to as "beforebacks" and "afterbacks" respectively. ...	[ "def", "callback", "(", "self", ",", "name", ",", "before", "=", "None", ",", "after", "=", "None", ")", ":", "if", "isinstance", "(", "name", ",", "(", "list", ",", "tuple", ")", ")", ":", "for", "name", "in", "name", ":", "self", ".", "callback...	51.954545	0.002147
def copy_all(self, ctxt): ''' copies all values into the current context from given context :param ctxt: ''' for key, value in ctxt.iteritems: self.set_attribute(key, value)	[ "def", "copy_all", "(", "self", ",", "ctxt", ")", ":", "for", "key", ",", "value", "in", "ctxt", ".", "iteritems", ":", "self", ".", "set_attribute", "(", "key", ",", "value", ")" ]	31.571429	0.013216
def make_data(self): """Return data of the field in a format that can be converted to JSON Returns: data (dict): A dictionary of dictionaries, such that for a given x, y pair, data[x][y] = {"dx": dx, "dy": dy}. Note that this is transposed from the matrix repre...	[ "def", "make_data", "(", "self", ")", ":", "X", ",", "Y", ",", "DX", ",", "DY", "=", "self", ".", "_calc_partials", "(", ")", "data", "=", "{", "}", "import", "pdb", "for", "x", "in", "self", ".", "xrange", ":", "data", "[", "x", "]", "=", "{...	37	0.008237
def _send_splunk(event, index_override=None, sourcetype_override=None): ''' Send the results to Splunk. Requires the Splunk HTTP Event Collector running on port 8088. This is available on Splunk Enterprise version 6.3 or higher. ''' # Get Splunk Options opts = _get_options() log.info(st...	[ "def", "_send_splunk", "(", "event", ",", "index_override", "=", "None", ",", "sourcetype_override", "=", "None", ")", ":", "# Get Splunk Options", "opts", "=", "_get_options", "(", ")", "log", ".", "info", "(", "str", "(", "'Options: %s'", ")", ",", "# futu...	35.057143	0.001586
def prt_summary_code(self, prt=sys.stdout): """Print summary of codes and groups that can be inputs to get_evcodes.""" prt.write('EVIDENCE GROUP AND CODES:\n') for grp, c2nt in self.grp2code2nt.items(): prt.write(' {GRP:19}: {CODES}\n'.format(GRP=grp, CODES=' '.join(c2nt.keys())))	[ "def", "prt_summary_code", "(", "self", ",", "prt", "=", "sys", ".", "stdout", ")", ":", "prt", ".", "write", "(", "'EVIDENCE GROUP AND CODES:\\n'", ")", "for", "grp", ",", "c2nt", "in", "self", ".", "grp2code2nt", ".", "items", "(", ")", ":", "prt", "...	63.2	0.0125
def from_variant_and_transcript( cls, variant, transcript, context_size): """ Extracts the reference sequence around a variant locus on a particular transcript. Parameters ---------- variant : varcode.Variant transcript : pyensembl.Transcript ...	[ "def", "from_variant_and_transcript", "(", "cls", ",", "variant", ",", "transcript", ",", "context_size", ")", ":", "full_transcript_sequence", "=", "transcript", ".", "sequence", "if", "full_transcript_sequence", "is", "None", ":", "logger", ".", "warn", "(", "\"...	33.782051	0.001106
def get_metrics_collector(self): """Returns this context's metrics collector""" if self.metrics_collector is None or not isinstance(self.metrics_collector, MetricsCollector): raise RuntimeError("Metrics collector is not registered in this context") return self.metrics_collector	[ "def", "get_metrics_collector", "(", "self", ")", ":", "if", "self", ".", "metrics_collector", "is", "None", "or", "not", "isinstance", "(", "self", ".", "metrics_collector", ",", "MetricsCollector", ")", ":", "raise", "RuntimeError", "(", "\"Metrics collector is ...	58.4	0.010135
def _apply_rules_no_recurse(expr, rules): """Non-recursively match expr again all rules""" try: # `rules` is an OrderedDict key => (pattern, replacement) items = rules.items() except AttributeError: # `rules` is a list of (pattern, replacement) tuples items = enumerate(rules)...	[ "def", "_apply_rules_no_recurse", "(", "expr", ",", "rules", ")", ":", "try", ":", "# `rules` is an OrderedDict key => (pattern, replacement)", "items", "=", "rules", ".", "items", "(", ")", "except", "AttributeError", ":", "# `rules` is a list of (pattern, replacement) tup...	33.5	0.001815
def _make_table_formatter(f, offset=None): """ A closure-izer for table arguments that include a format and possibly an offset. """ format = f delta = offset return lambda v: _resolve_table(v, format, delta)	[ "def", "_make_table_formatter", "(", "f", ",", "offset", "=", "None", ")", ":", "format", "=", "f", "delta", "=", "offset", "return", "lambda", "v", ":", "_resolve_table", "(", "v", ",", "format", ",", "delta", ")" ]	42.2	0.027907
def setNewPassword(self, url, username, password): """ Public method to manually set the credentials for a url in the browser. """ self.br.add_password(url, username, password)	[ "def", "setNewPassword", "(", "self", ",", "url", ",", "username", ",", "password", ")", ":", "self", ".", "br", ".", "add_password", "(", "url", ",", "username", ",", "password", ")" ]	41.6	0.014151
def convert(self, value, units, newunits): """ Converts a value expressed in certain units to a new units. """ return value * self._units[units] / self._units[newunits]	[ "def", "convert", "(", "self", ",", "value", ",", "units", ",", "newunits", ")", ":", "return", "value", "*", "self", ".", "_units", "[", "units", "]", "/", "self", ".", "_units", "[", "newunits", "]" ]	39.6	0.009901
def _normalize_coerce_to_field_dict(self, v): """ coerces strings to a dict {'value': str} """ def tokenize(s): """ Tokenize a string by splitting it by + and - >>> tokenize('this + that') ['this', '+', 'that'] >>> tokenize('this+that') ['th...	[ "def", "_normalize_coerce_to_field_dict", "(", "self", ",", "v", ")", ":", "def", "tokenize", "(", "s", ")", ":", "\"\"\" Tokenize a string by splitting it by + and -\n\n >>> tokenize('this + that')\n ['this', '+', 'that']\n\n >>> tokenize('this+that')\n ...	35.288889	0.001225
def migrate(migrator, database, kwargs): """ Write your migrations here. > Model = migrator.orm['name'] > migrator.sql(sql) > migrator.create_table(Model) > migrator.drop_table(Model, cascade=True) > migrator.add_columns(Model, fields) > migrator.change_columns(Model, **fields) > m...	[ "def", "migrate", "(", "migrator", ",", "database", ",", "", "", "kwargs", ")", ":", "@", "migrator", ".", "create_table", "class", "DataItem", "(", "pw", ".", "Model", ")", ":", "created", "=", "pw", ".", "DateTimeField", "(", "default", "=", "dt", ...	36.916667	0.0011
async def execute(query): """Execute SELECT, INSERT, UPDATE or DELETE query asyncronously. :param query: peewee query instance created with ``Model.select()``, ``Model.update()`` etc. :return: result depends on query type, it's the same as for sync ``query.execute()`` ...	[ "async", "def", "execute", "(", "query", ")", ":", "if", "isinstance", "(", "query", ",", "(", "peewee", ".", "Select", ",", "peewee", ".", "ModelCompoundSelectQuery", ")", ")", ":", "coroutine", "=", "select", "elif", "isinstance", "(", "query", ",", "p...	34.7	0.001403
def __get_segment_types(self, element): """ given a <segment> or <group> element, returns its segment type and the segment type of its parent (i.e. its dominating node) Parameters ---------- element : ??? etree Element Returns ------- segment_typ...	[ "def", "__get_segment_types", "(", "self", ",", "element", ")", ":", "if", "not", "'parent'", "in", "element", ".", "attrib", ":", "if", "element", ".", "tag", "==", "'segment'", ":", "segment_type", "=", "'isolated'", "parent_segment_type", "=", "None", "el...	41.58	0.00188
def average_azimuth(self): """ Calculate and return weighted average azimuth of all line's segments in decimal degrees. Uses formula from http://en.wikipedia.org/wiki/Mean_of_circular_quantities >>> from openquake.hazardlib.geo.point import Point as P >>> '%.1f'...	[ "def", "average_azimuth", "(", "self", ")", ":", "if", "len", "(", "self", ".", "points", ")", "==", "2", ":", "return", "self", ".", "points", "[", "0", "]", ".", "azimuth", "(", "self", ".", "points", "[", "1", "]", ")", "lons", "=", "numpy", ...	44.352941	0.001947
def G(self, v, t): """Aburn2012 equations right hand side, noise term Args: v: (8,) array state vector t: number scalar time Returns: (8,1) array Only one matrix column, meaning that in this example we are modelling th...	[ "def", "G", "(", "self", ",", "v", ",", "t", ")", ":", "ret", "=", "np", ".", "zeros", "(", "(", "8", ",", "1", ")", ")", "ret", "[", "4", ",", "0", "]", "=", "self", ".", "ke1", "", "self", ".", "He1", "", "self", ".", "u_sdev", "ret...	38.111111	0.009957
def getDPI(filepath): """ Return (width, height) for a given img file content no requirements """ xDPI = -1 yDPI = -1 with open(filepath, 'rb') as fhandle: head = fhandle.read(24) size = len(head) # handle GIFs # GIFs doesn't have density if size >= 10...	[ "def", "getDPI", "(", "filepath", ")", ":", "xDPI", "=", "-", "1", "yDPI", "=", "-", "1", "with", "open", "(", "filepath", ",", "'rb'", ")", "as", "fhandle", ":", "head", "=", "fhandle", ".", "read", "(", "24", ")", "size", "=", "len", "(", "he...	42.678899	0.00105
def _shutdown(self, libvirt_cmd, ssh_cmd, msg): """ Choose the invoking method (using libvirt or ssh) to shutdown / poweroff the domain. If acpi is defined in the domain use libvirt, otherwise use ssh. Args: libvirt_cmd (function): Libvirt function the invoke ...	[ "def", "_shutdown", "(", "self", ",", "libvirt_cmd", ",", "ssh_cmd", ",", "msg", ")", ":", "if", "not", "self", ".", "alive", "(", ")", ":", "return", "with", "LogTask", "(", "'{} VM {}'", ".", "format", "(", "msg", ",", "self", ".", "vm", ".", "na...	34.578947	0.00148
def report_to_list(queryset, display_fields, user): """ Create list from a report with all data filtering. queryset: initial queryset to generate results display_fields: list of field references or DisplayField models user: requesting user Returns list, message in case of issues. """ model...	[ "def", "report_to_list", "(", "queryset", ",", "display_fields", ",", "user", ")", ":", "model_class", "=", "queryset", ".", "model", "objects", "=", "queryset", "message", "=", "\"\"", "if", "not", "_can_change_or_view", "(", "model_class", ",", "user", ")", ...	30	0.000621
def date_from_quarter(base_date, ordinal, year): """ Extract date from quarter of a year """ interval = 3 month_start = interval * (ordinal - 1) if month_start < 0: month_start = 9 month_end = month_start + interval if month_start == 0: month_start = 1 return [ ...	[ "def", "date_from_quarter", "(", "base_date", ",", "ordinal", ",", "year", ")", ":", "interval", "=", "3", "month_start", "=", "interval", "*", "(", "ordinal", "-", "1", ")", "if", "month_start", "<", "0", ":", "month_start", "=", "9", "month_end", "=", ...	28	0.002304
def upgrade_many(upgrade=True, create_examples_all=True): """upgrade many libs. source: http://arduino.cc/playground/Main/LibraryList you can set your arduino path if it is not default os.environ['ARDUINO_HOME'] = '/home/...' """ urls = set() def inst(url): print('upgrading %s' %...	[ "def", "upgrade_many", "(", "upgrade", "=", "True", ",", "create_examples_all", "=", "True", ")", ":", "urls", "=", "set", "(", ")", "def", "inst", "(", "url", ")", ":", "print", "(", "'upgrading %s'", "%", "url", ")", "assert", "url", "not", "in", "...	41.850575	0.001476
def get_episode_name(self, series, episode_numbers, season_number): """Perform lookup for name of episode numbers for a given series. :param object series: instance of a series :param list episode_numbers: the episode sequence number :param int season_number: numeric season of series ...	[ "def", "get_episode_name", "(", "self", ",", "series", ",", "episode_numbers", ",", "season_number", ")", ":", "ids", "=", "series", ".", "to_identifier", "(", ")", "series_id", "=", "ids", "[", "'ids'", "]", "[", "'trakt'", "]", "epnames", "=", "[", "]"...	37.44	0.002083
def make_link_node(rawtext, app, name, options): """ Create a link to the TL reference. :param rawtext: Text being replaced with link node. :param app: Sphinx application context :param name: Name of the object to link to :param options: Options dictionary passed to role func. """ try: ...	[ "def", "make_link_node", "(", "rawtext", ",", "app", ",", "name", ",", "options", ")", ":", "try", ":", "base", "=", "app", ".", "config", ".", "tl_ref_url", "if", "not", "base", ":", "raise", "AttributeError", "except", "AttributeError", "as", "e", ":",...	30.666667	0.001318
def _print(self, msg, flush=False, end="\n"): """Helper function to print connection status messages when in verbose mode.""" if self._verbose: print2(msg, end=end, flush=flush)	[ "def", "_print", "(", "self", ",", "msg", ",", "flush", "=", "False", ",", "end", "=", "\"\\n\"", ")", ":", "if", "self", ".", "_verbose", ":", "print2", "(", "msg", ",", "end", "=", "end", ",", "flush", "=", "flush", ")" ]	50.5	0.014634
def cybox_csv_handler(self, enrichment, fact, attr_info, add_fact_kargs): """ Handler for dealing with comma-separated values. Unfortunately, CybOX et al. sometimes use comma-separated value lists. Or rather, since Cybox 2.0.1, '##comma##'-separated lists. At least now we can ...	[ "def", "cybox_csv_handler", "(", "self", ",", "enrichment", ",", "fact", ",", "attr_info", ",", "add_fact_kargs", ")", ":", "# Since Cybox 2.0.1, '##comma##' is to be used instead of ','. So,", "# we first check whether '##comma##' occurs -- if so, we take", "# that as separator; if ...	33.517241	0.002
def _add_method_setting(self, conn, api_id, stage_name, path, key, value, op): """ Update a single method setting on the specified stage. This uses the 'add' operation to PATCH the resource. :param conn: APIGateway API connection :type conn: :py:class...	[ "def", "_add_method_setting", "(", "self", ",", "conn", ",", "api_id", ",", "stage_name", ",", "path", ",", "key", ",", "value", ",", "op", ")", ":", "logger", ".", "debug", "(", "'update_stage PATCH %s on %s; value=%s'", ",", "op", ",", "path", ",", "str"...	38.731707	0.002457
def subscribe(self, topics=(), pattern=None, listener=None): """Subscribe to a list of topics, or a topic regex pattern. Partitions will be dynamically assigned via a group coordinator. Topic subscriptions are not incremental: this list will replace the current assignment (if there is o...	[ "def", "subscribe", "(", "self", ",", "topics", "=", "(", ")", ",", "pattern", "=", "None", ",", "listener", "=", "None", ")", ":", "if", "self", ".", "_user_assignment", "or", "(", "topics", "and", "pattern", ")", ":", "raise", "IllegalStateError", "(...	49.571429	0.002019
def reducer_init_output(self): """ establish connection to MongoDB """ try: self.mongo = MongoGeo(db=DB, collection=COLLECTION, timeout=MONGO_TIMEOUT) except ServerSelectionTimeoutError: # failed to connect to running MongoDB instance self.mongo = None	[ "def", "reducer_init_output", "(", "self", ")", ":", "try", ":", "self", ".", "mongo", "=", "MongoGeo", "(", "db", "=", "DB", ",", "collection", "=", "COLLECTION", ",", "timeout", "=", "MONGO_TIMEOUT", ")", "except", "ServerSelectionTimeoutError", ":", "# fa...	43.714286	0.009615
def priority(var): """Prioritizes resource position in the final HTML. To be fed into sorted(key=). Javascript consoles throw errors if Bootstrap's js file is mentioned before jQuery. Using this function such errors can be avoided. Used internally. Positional arguments: var -- value sent by list.s...	[ "def", "priority", "(", "var", ")", ":", "order", "=", "dict", "(", "JQUERY", "=", "'0'", ",", "BOOTSTRAP", "=", "'1'", ")", "return", "order", ".", "get", "(", "var", ",", "var", ")" ]	39.214286	0.008897
def validate_client_properties(props): """ Validate the client properties setting. This will add the "version", "information", and "product" keys if they are missing. All other keys are application-specific. Raises: exceptions.ConfigurationException: If any of the basic keys are overridden...	[ "def", "validate_client_properties", "(", "props", ")", ":", "for", "key", "in", "(", "\"version\"", ",", "\"information\"", ",", "\"product\"", ")", ":", "# Nested dictionaries are not merged so key can be missing", "if", "key", "not", "in", "props", ":", "props", ...	42.421053	0.002427
def mrcompletion(A, reordered=True): """ Minimum rank positive semidefinite completion. The routine takes a positive semidefinite cspmatrix :math:`A` and returns a dense matrix :math:`Y` with :math:`r` columns that satisfies .. math:: P( YY^T ) = A where .. math:: r = ...	[ "def", "mrcompletion", "(", "A", ",", "reordered", "=", "True", ")", ":", "assert", "isinstance", "(", "A", ",", "cspmatrix", ")", "and", "A", ".", "is_factor", "is", "False", ",", "\"A must be a cspmatrix\"", "symb", "=", "A", ".", "symb", "n", "=", "...	33.699029	0.028547
def _do_request(self, method, endpoint, data=None): """Perform one request, possibly solving unauthorized return code """ # No token - authorize if self.token is None: self._do_authorize() r = requests.request( method, "{0}{1}".format(self.bas...	[ "def", "_do_request", "(", "self", ",", "method", ",", "endpoint", ",", "data", "=", "None", ")", ":", "# No token - authorize", "if", "self", ".", "token", "is", "None", ":", "self", ".", "_do_authorize", "(", ")", "r", "=", "requests", ".", "request", ...	31.323529	0.001821
def add_rfile(self, name, help, required=True, default=None): """ Add a new option with a type of a readable file. This is the same as the string option with the exception that the default value will have the following variables replaced within it: $USER_DATA The path to the users data directory $DATA_PAT...	[ "def", "add_rfile", "(", "self", ",", "name", ",", "help", ",", "required", "=", "True", ",", "default", "=", "None", ")", ":", "if", "isinstance", "(", "default", ",", "str", ")", ":", "default", "=", "default", ".", "replace", "(", "'$DATA_PATH '", ...	58.666667	0.020503

def _serialize_xml(self, root): """Serialize XML data into string It serializes the dynamic xml created and converts it to a string. This is done before sending the xml to the ILO. :param root: root of the dynamic xml. """ if hasattr(etree, 'tostringlist'): ...

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def to_json(model, sort=False, **kwargs): """ Return the model as a JSON document. ``kwargs`` are passed on to ``json.dumps``. Parameters ---------- model : cobra.Model The cobra model to represent. sort : bool, optional Whether to sort the metabolites, reactions, and genes...

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def bytes_to_string(data, headers, **_): """Convert all *data* and *headers* bytes to strings. Binary data that cannot be decoded is converted to a hexadecimal representation via :func:`binascii.hexlify`. :param iterable data: An :term:`iterable` (e.g. list) of rows. :param iterable headers: The c...

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def _get_asym_hel(self,d): """ Find the asymmetry of each helicity. """ # get data 1+ 2+ 1- 2- d0 = d[0]; d1 = d[2]; d2 = d[1]; d3 = d[3] # pre-calcs denom1 = d0+d1; denom2 = d2+d3 # check for div by zero denom1[den...

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def flatten_dictionary(nested_dict, separator): """Flattens a nested dictionary. New keys are concatenations of nested keys with the `separator` in between. """ flat_dict = {} for key, val in nested_dict.items(): if isinstance(val, dict): new_flat_dict = flatten_dictionary(val,...

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def bisect(f, a, b, args=(), xtol=_xtol, rtol=_rtol, maxiter=_iter, disp=True): """ Find root of a function within an interval adapted from Scipy's bisect. Basic bisection routine to find a zero of the function `f` between the arguments `a` and `b`. `f(a)` and `f(b)` cannot have the same sig...

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def make_postcard(self, npix=300, shape=(1070, 1132), buffer_size=15): """ Develop a "postcard" region around the target star. Other stars in this postcard will be used as possible reference stars. Args: npix: The size of the postcard region. The region will be a sq...

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def generate_hash(data, algorithm='chd_ph', hash_fns=(), chd_keys_per_bin=1, chd_load_factor=None, fch_bits_per_key=None, num_graph_vertices=None, brz_memory_size=8, brz_temp_dir=None, brz_max_keys_per_bucket=128, bdz_precomputed_rank=7, chd_avg_ke...

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def _get_m2m_field(model, sender): """ Get the field name from a model and a sender from m2m_changed signal. """ for field in getattr(model, '_tracked_fields', []): if isinstance(model._meta.get_field(field), ManyToManyField): if getattr(model, field).through == sender: ...

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def drag_sphere(Re, Method=None, AvailableMethods=False): r'''This function handles calculation of drag coefficient on spheres. Twenty methods are available, all requiring only the Reynolds number of the sphere. Most methods are valid from Re=0 to Re=200,000. A correlation will be automatically selected...

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def _get_parent_timestamp(dirname, mtime): """ Get the timestamps up the directory tree. All the way to root. Because they affect every subdirectory. """ parent_pathname = os.path.dirname(dirname) # max between the parent timestamp the one passed in mtime = _max_timestamps(parent_pathname,...

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def after(self, value): """ Sets the operator type to Query.Op.After and sets the value to the amount that this query should be lower than. This is functionally the same as doing the lessThan operation, but is useful for visual queries for things like dates. :p...

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def store_traces(self, value): """ Setter for _store_traces. _store_traces controls in memory storing of received lines. Also logs the change for the user. :param value: Boolean :return: Nothing """ if not value: self.logger.debug("Stopping storing re...

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def SpamsumDistance(ssA, ssB): ''' returns the spamsum distance between ssA and ssB if they use a different block size, assume maximum distance otherwise returns the LevDistance ''' mA = re.match('^(\d+)[:](.*)$', ssA) mB = re.match('^(\d+)[:](.*)$', ssB) if mA == None or mB == None: ...

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def get(self, param, default=EMPTY): """ Returns the nparam value, and returns the default if it doesn't exist. If default is none, an exception will be raised instead. the returned parameter will have been specialized against the global context """ if not self.has(param...

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def ttr(self, kloc, acc=10**3, verbose=1): """ Three terms relation's coefficient generator Args: k (numpy.ndarray, int): The order of the coefficients. acc (int): Accuracy of discretized Stieltjes if analytical methods are ...

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def count_alleles(self, max_allele=None, subpop=None): """Count the number of calls of each allele per variant. Parameters ---------- max_allele : int, optional The highest allele index to count. Alleles greater than this index will be ignored. subpop : a...

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def neg(self): """Negative value of all components.""" self.x = -self.x self.y = -self.y self.z = -self.z

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def _get_axis_mode(self, axis): "will get the axis mode for the current series" if all([isinstance(getattr(s, axis), TimeVariable) for s in self._series]): return 'time' return None

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def cluster_nodes(self): """Each node in a Redis Cluster has its view of the current cluster configuration, given by the set of known nodes, the state of the connection we have with such nodes, their flags, properties and assigned slots, and so forth. ``CLUSTER NODES`` provides ...

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def set_done(self): """ set_done: records progress after Ricecooker process has been completed Args: None Returns: None """ self.__record_progress(Status.DONE) # Delete restoration point for last step to indicate process has been completed os.remove(self....

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def _load_11_6(self, **kwargs): """Must check if rule actually exists before proceeding with load.""" if self._check_existence_by_collection(self._meta_data['container'], kwargs['name']): return super(Protocol_Sip, self)._load(**kwargs) msg = 'The application resource named, {}, does...

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def _task_to_dict(task): """Converts a WorkQueue to a JSON-able dictionary.""" payload = task.payload if payload and task.content_type == 'application/json': payload = json.loads(payload) return dict( task_id=task.task_id, queue_name=task.queue_name, eta=_datetime_to_epo...

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36.5625

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def decompose_code(code): """ Decomposes a MARC "code" into tag, ind1, ind2, subcode """ code = "%-6s" % code ind1 = code[3:4] if ind1 == " ": ind1 = "_" ind2 = code[4:5] if ind2 == " ": ind2 = "_" subcode = code[5:6] if subcode == " ": subcode = None return (code[0:3], ind1,...

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def send(self, msg): """Send `data` to `handle`, and tell the broker we have output. May be called from any thread.""" self._router.broker.defer(self._send, msg)

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def _verifyReturnToArgs(query): """Verify that the arguments in the return_to URL are present in this response. """ message = Message.fromPostArgs(query) return_to = message.getArg(OPENID_NS, 'return_to') if return_to is None: raise ProtocolError('Response ha...

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def set_margins(self, top=None, bottom=None): """Select top and bottom margins for the scrolling region. :param int top: the smallest line number that is scrolled. :param int bottom: the biggest line number that is scrolled. """ # XXX 0 corresponds to the CSI with no parameters....

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def process(self, salt_data, token, opts): ''' Process events and publish data ''' parts = salt_data['tag'].split('/') if len(parts) < 2: return # TBD: Simplify these conditional expressions if parts[1] == 'job': if parts[3] == 'new': ...

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38

0.002334

def setCovariance(self, cov): """ makes lowrank approximation of cov """ assert cov.shape[0]==self.dim, 'Dimension mismatch.' S, U = la.eigh(cov) U = U[:,::-1] S = S[::-1] _X = U[:, :self.rank] * sp.sqrt(S[:self.rank]) self.X = _X

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def requote_uri(uri): """Re-quote the given URI. This function passes the given URI through an unquote/quote cycle to ensure that it is fully and consistently quoted. :rtype: str """ safe_with_percent = "!#$%&'()*+,/:;=?@[]~" safe_without_percent = "!#$&'()*+,/:;=?@[]~" try: # Un...

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def main() -> None: """ Command-line processor. See ``--help`` for details. """ main_only_quicksetup_rootlogger() wdcd_suffix = "_with_drop_create_database" timeformat = "%Y%m%dT%H%M%S" parser = argparse.ArgumentParser( description=""" Back up a specific MySQL database. The r...

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def _write_scalar(self, name:str, scalar_value, iteration:int)->None: "Writes single scalar value to Tensorboard." tag = self.metrics_root + name self.tbwriter.add_scalar(tag=tag, scalar_value=scalar_value, global_step=iteration)

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def Tags(self): """Return all tags found in the value stream. Returns: A `{tagType: ['list', 'of', 'tags']}` dictionary. """ return { IMAGES: self.images.Keys(), AUDIO: self.audios.Keys(), HISTOGRAMS: self.histograms.Keys(), SCALARS: self.scalars.Keys(), CO...

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def destroy(name, stop=False, path=None): ''' Destroy the named container. .. warning:: Destroys all data associated with the container. path path to the container parent directory (default: /var/lib/lxc) .. versionadded:: 2015.8.0 stop : False If ``True``, the c...

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def pypy_version_monkeypatch(): """Patch Tox to work with non-default PyPy 3 versions.""" # Travis virtualenv do not provide `pypy3`, which tox tries to execute. # This doesnt affect Travis python version `pypy3`, as the pyenv pypy3 # is in the PATH. # https://github.com/travis-ci/travis-ci/issues/6...

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def handle(self): """Handles the real time update of some code from the cached representation of the module. """ #If we have more statements in the buffer than the cached, it doesn't matter, #we just run the first few replacements of the cache concurrently and do #what'...

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def face_colors(self, values): """ Set the colors for each face of a mesh. This will apply these colors and delete any previously specified color information. Parameters ------------ colors: (len(mesh.faces), 3), set each face to the specified color ...

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def create_configuration(raid_config): """Create a RAID configuration on this server. This method creates the given RAID configuration on the server based on the input passed. :param raid_config: The dictionary containing the requested RAID configuration. This data structure should be as follow...

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def _pyside2(): """Initialise PySide2 These functions serve to test the existence of a binding along with set it up in such a way that it aligns with the final step; adding members from the original binding to Qt.py """ import PySide2 as module _setup(module, ["QtUiTools"]) Qt.__...

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def download(client, target_dir): """Download listing files from play and saves them into folder herachy.""" print('') print('download store listings') print('---------------------') listings = client.list('listings') for listing in listings: path = os.path.join(target_dir, 'listings', l...

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def _apply_color(code, content): """ Apply a color code to text """ normal = u'\x1B[0m' seq = u'\x1B[%sm' % code # Replace any normal sequences with this sequence to support nested colors return seq + (normal + seq).join(content.split(normal)) + normal

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def calcparams_desoto(self, effective_irradiance, temp_cell, **kwargs): """ Use the :py:func:`calcparams_desoto` function, the input parameters and ``self.module_parameters`` to calculate the module currents and resistances. Parameters ---------- effective_irradi...

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def loadDolfin(filename, c="gold", alpha=0.5, wire=None, bc=None): """Reads a `Fenics/Dolfin` file format. Return an ``Actor(vtkActor)`` object.""" if not os.path.exists(filename): colors.printc("~noentry Error in loadDolfin: Cannot find", filename, c=1) return None import xml.etree.ElementT...

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def clear_imgs(self) -> None: "Clear the widget's images preview pane." self._preview_header.value = self._heading self._img_pane.children = tuple()

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def random_word(self, length, prefix=0, start=False, end=False, flatten=False): """ Generate a random word of length from this table. :param length: the length of the generated word; >= 1; :param prefix: if greater than 0, the maximum length of the prefix to ...

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def rouge_l_sentence_level(evaluated_sentences, reference_sentences): """ Computes ROUGE-L (sentence level) of two text collections of sentences. http://research.microsoft.com/en-us/um/people/cyl/download/papers/ rouge-working-note-v1.3.1.pdf Calculated according to: R_lcs = LCS(X,Y)/m P_lc...

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def pkg_blacklist(self): """Manage blacklist packages """ blacklist = BlackList() options = [ "-b", "--blacklist" ] flag = [ "--add", "--remove" ] command = ["list"] if (len(self.args) == 2 and self.a...

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def _latex_item_to_string(item, *, escape=False, as_content=False): """Use the render method when possible, otherwise uses str. Args ---- item: object An object that needs to be converted to a string escape: bool Flag that indicates if escaping is needed as_content: bool ...

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def datacenter(self, name): """ :param name: location key :type name: :py:class:`basestring` :Returns: a new DataCenter object This method treats the 'name' argument as a location key (on the `known_locations` attribute dict) or FQDN, and keeps existing...

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def values(self): """Returns a list of all values in the dictionary. Returns: list of str: [value1,value2,...,valueN] """ all_values = [v.decode('utf-8') for k,v in self.rdb.hgetall(self.session_hash).items()] return all_values

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def get(self, key, default=None): """ Gets @key from :prop:key_prefix, defaulting to @default """ try: return self[key] except KeyError: return default or self._default

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def document_is_multiline_python(document): """ Determine whether this is a multiline Python document. """ def ends_in_multiline_string(): """ ``True`` if we're inside a multiline string at the end of the text. """ delims = _multiline_string_delims.findall(document.text) ...

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def _check_open_dir(self, fs, path, info): # type: (FS, Text, Info) -> bool """Check if a directory should be considered in the walk. """ if self.exclude_dirs is not None and fs.match(self.exclude_dirs, info.name): return False if self.filter_dirs is not None and not ...

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def info(self): """Execute an HTTP request to get details on a queue, and return it. """ url = "queues/%s" % (self.name,) result = self.client.get(url) return result['body']['queue']

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def _add_job_from_spec(self, job_json, use_job_id=True): """ Add a single job to the Dagobah from a spec. """ job_id = (job_json['job_id'] if use_job_id else self.backend.get_new_job_id()) self.add_job(str(job_json['name']), job_id) job = self.get_job...

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def _steal_content(self, other_page): """ Call ImgDoc.steal_page() instead """ other_doc = other_page.doc other_doc_pages = other_doc.pages[:] other_doc_nb_pages = other_doc.nb_pages other_page_nb = other_page.page_nb to_move = [ (other_page._...

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def get_last_documents(self): """Return the most recently parsed list of ``Documents``. :rtype: A list of the most recently parsed ``Documents`` ordered by name. """ return ( self.session.query(Document) .filter(Document.name.in_(self.last_docs)) .ord...

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def get_token_status(token, serializer, max_age=None, return_data=False): """Get the status of a token. :param token: The token to check :param serializer: The name of the seriailzer. Can be one of the following: ``confirm``, ``login``, ``reset`` :param max_age: The name of the m...

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def get_mailcap_entry(self, url): """ Search through the mime handlers list and attempt to find the appropriate command to open the provided url with. Will raise a MailcapEntryNotFound exception if no valid command exists. Params: url (text): URL that will be checke...

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def asgate(self) -> Gate: """ Return the action of this circuit as a gate """ gate = identity_gate(self.qubits) for elem in self.elements: gate = elem.asgate() @ gate return gate

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def _process_interaction(self, source_id, interaction, text, pmid, extra_annotations): """Process an interaction JSON tuple from the ISI output, and adds up to one statement to the list of extracted statements. Parameters ---------- source_id : str ...

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def find_rings(self, including=None): """ Find ring structures in the MoleculeGraph. :param including: list of site indices. If including is not None, then find_rings will only return those rings including the specified sites. By default, this parameter is None, and ...

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def get_user_stats_for_game(self, steamID, appID, format=None): """Request the user stats for a given game. steamID: The users ID appID: The app id format: Return format. None defaults to json. (json, xml, vdf) """ parameters = {'steamid' : steamID, 'appid' : appID} ...

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def link(self, oldpath, newpath, dir_fd=None): """Create a hard link at new_path, pointing at old_path. Args: oldpath: An existing link to the target file. newpath: The destination path to create a new link at. dir_fd: If not `None`, the file descriptor of a director...

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def run(self): """ Called by the process, it runs it. NEVER call this method directly. Instead call start() to start the separate process. If you don't want to use a second process, then call fetch() directly on this istance. To stop, call terminate() """ if not self._q...

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def plot_fullcalib(dio_cross,feedtype='l',**kwargs): ''' Generates and shows five plots: Uncalibrated diode, calibrated diode, fold information, phase offsets, and gain offsets for a noise diode measurement. Most useful diagnostic plot to make sure calibration proceeds correctly. ''' plt.figure...

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def callback(self, name, before=None, after=None): """Add a callback pair to this spectator. You can specify, with keywords, whether each callback should be triggered before, and/or or after a given method is called - hereafter refered to as "beforebacks" and "afterbacks" respectively. ...

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def copy_all(self, ctxt): ''' copies all values into the current context from given context :param ctxt: ''' for key, value in ctxt.iteritems: self.set_attribute(key, value)

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def make_data(self): """Return data of the field in a format that can be converted to JSON Returns: data (dict): A dictionary of dictionaries, such that for a given x, y pair, data[x][y] = {"dx": dx, "dy": dy}. Note that this is transposed from the matrix repre...

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def _send_splunk(event, index_override=None, sourcetype_override=None): ''' Send the results to Splunk. Requires the Splunk HTTP Event Collector running on port 8088. This is available on Splunk Enterprise version 6.3 or higher. ''' # Get Splunk Options opts = _get_options() log.info(st...

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def prt_summary_code(self, prt=sys.stdout): """Print summary of codes and groups that can be inputs to get_evcodes.""" prt.write('EVIDENCE GROUP AND CODES:\n') for grp, c2nt in self.grp2code2nt.items(): prt.write(' {GRP:19}: {CODES}\n'.format(GRP=grp, CODES=' '.join(c2nt.keys())))

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def from_variant_and_transcript( cls, variant, transcript, context_size): """ Extracts the reference sequence around a variant locus on a particular transcript. Parameters ---------- variant : varcode.Variant transcript : pyensembl.Transcript ...

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def get_metrics_collector(self): """Returns this context's metrics collector""" if self.metrics_collector is None or not isinstance(self.metrics_collector, MetricsCollector): raise RuntimeError("Metrics collector is not registered in this context") return self.metrics_collector

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def _apply_rules_no_recurse(expr, rules): """Non-recursively match expr again all rules""" try: # `rules` is an OrderedDict key => (pattern, replacement) items = rules.items() except AttributeError: # `rules` is a list of (pattern, replacement) tuples items = enumerate(rules)...

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33.5

0.001815

def _make_table_formatter(f, offset=None): """ A closure-izer for table arguments that include a format and possibly an offset. """ format = f delta = offset return lambda v: _resolve_table(v, format, delta)

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42.2

0.027907

def setNewPassword(self, url, username, password): """ Public method to manually set the credentials for a url in the browser. """ self.br.add_password(url, username, password)

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41.6

0.014151

def convert(self, value, units, newunits): """ Converts a value expressed in certain *units* to a new units. """ return value * self._units[units] / self._units[newunits]

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39.6

0.009901

def _normalize_coerce_to_field_dict(self, v): """ coerces strings to a dict {'value': str} """ def tokenize(s): """ Tokenize a string by splitting it by + and - >>> tokenize('this + that') ['this', '+', 'that'] >>> tokenize('this+that') ['th...

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35.288889

0.001225

def migrate(migrator, database, **kwargs): """ Write your migrations here. > Model = migrator.orm['name'] > migrator.sql(sql) > migrator.create_table(Model) > migrator.drop_table(Model, cascade=True) > migrator.add_columns(Model, **fields) > migrator.change_columns(Model, **fields) > m...

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36.916667

0.0011

async def execute(query): """Execute *SELECT*, *INSERT*, *UPDATE* or *DELETE* query asyncronously. :param query: peewee query instance created with ``Model.select()``, ``Model.update()`` etc. :return: result depends on query type, it's the same as for sync ``query.execute()`` ...

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34.7

0.001403

def __get_segment_types(self, element): """ given a <segment> or <group> element, returns its segment type and the segment type of its parent (i.e. its dominating node) Parameters ---------- element : ??? etree Element Returns ------- segment_typ...

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41.58

0.00188

def average_azimuth(self): """ Calculate and return weighted average azimuth of all line's segments in decimal degrees. Uses formula from http://en.wikipedia.org/wiki/Mean_of_circular_quantities >>> from openquake.hazardlib.geo.point import Point as P >>> '%.1f'...

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44.352941

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def G(self, v, t): """Aburn2012 equations right hand side, noise term Args: v: (8,) array state vector t: number scalar time Returns: (8,1) array Only one matrix column, meaning that in this example we are modelling th...

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38.111111

0.009957

def getDPI(filepath): """ Return (width, height) for a given img file content no requirements """ xDPI = -1 yDPI = -1 with open(filepath, 'rb') as fhandle: head = fhandle.read(24) size = len(head) # handle GIFs # GIFs doesn't have density if size >= 10...

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42.678899

0.00105

def _shutdown(self, libvirt_cmd, ssh_cmd, msg): """ Choose the invoking method (using libvirt or ssh) to shutdown / poweroff the domain. If acpi is defined in the domain use libvirt, otherwise use ssh. Args: libvirt_cmd (function): Libvirt function the invoke ...

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34.578947

0.00148

def report_to_list(queryset, display_fields, user): """ Create list from a report with all data filtering. queryset: initial queryset to generate results display_fields: list of field references or DisplayField models user: requesting user Returns list, message in case of issues. """ model...

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30

0.000621

def date_from_quarter(base_date, ordinal, year): """ Extract date from quarter of a year """ interval = 3 month_start = interval * (ordinal - 1) if month_start < 0: month_start = 9 month_end = month_start + interval if month_start == 0: month_start = 1 return [ ...

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28

0.002304

def upgrade_many(upgrade=True, create_examples_all=True): """upgrade many libs. source: http://arduino.cc/playground/Main/LibraryList you can set your arduino path if it is not default os.environ['ARDUINO_HOME'] = '/home/...' """ urls = set() def inst(url): print('upgrading %s' %...

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41.850575

0.001476

def get_episode_name(self, series, episode_numbers, season_number): """Perform lookup for name of episode numbers for a given series. :param object series: instance of a series :param list episode_numbers: the episode sequence number :param int season_number: numeric season of series ...

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37.44

0.002083

def make_link_node(rawtext, app, name, options): """ Create a link to the TL reference. :param rawtext: Text being replaced with link node. :param app: Sphinx application context :param name: Name of the object to link to :param options: Options dictionary passed to role func. """ try: ...

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30.666667

0.001318

def _print(self, msg, flush=False, end="\n"): """Helper function to print connection status messages when in verbose mode.""" if self._verbose: print2(msg, end=end, flush=flush)

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50.5

0.014634

def cybox_csv_handler(self, enrichment, fact, attr_info, add_fact_kargs): """ Handler for dealing with comma-separated values. Unfortunately, CybOX et al. sometimes use comma-separated value lists. Or rather, since Cybox 2.0.1, '##comma##'-separated lists. At least now we can ...

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33.517241

0.002

def _add_method_setting(self, conn, api_id, stage_name, path, key, value, op): """ Update a single method setting on the specified stage. This uses the 'add' operation to PATCH the resource. :param conn: APIGateway API connection :type conn: :py:class...

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38.731707

0.002457

def subscribe(self, topics=(), pattern=None, listener=None): """Subscribe to a list of topics, or a topic regex pattern. Partitions will be dynamically assigned via a group coordinator. Topic subscriptions are not incremental: this list will replace the current assignment (if there is o...

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49.571429

0.002019

def reducer_init_output(self): """ establish connection to MongoDB """ try: self.mongo = MongoGeo(db=DB, collection=COLLECTION, timeout=MONGO_TIMEOUT) except ServerSelectionTimeoutError: # failed to connect to running MongoDB instance self.mongo = None

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43.714286

0.009615

def priority(var): """Prioritizes resource position in the final HTML. To be fed into sorted(key=). Javascript consoles throw errors if Bootstrap's js file is mentioned before jQuery. Using this function such errors can be avoided. Used internally. Positional arguments: var -- value sent by list.s...

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39.214286

0.008897

def validate_client_properties(props): """ Validate the client properties setting. This will add the "version", "information", and "product" keys if they are missing. All other keys are application-specific. Raises: exceptions.ConfigurationException: If any of the basic keys are overridden...

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42.421053

0.002427

def mrcompletion(A, reordered=True): """ Minimum rank positive semidefinite completion. The routine takes a positive semidefinite cspmatrix :math:`A` and returns a dense matrix :math:`Y` with :math:`r` columns that satisfies .. math:: P( YY^T ) = A where .. math:: r = ...

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33.699029

0.028547

def _do_request(self, method, endpoint, data=None): """Perform one request, possibly solving unauthorized return code """ # No token - authorize if self.token is None: self._do_authorize() r = requests.request( method, "{0}{1}".format(self.bas...

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31.323529

0.001821

def add_rfile(self, name, help, required=True, default=None): """ Add a new option with a type of a readable file. This is the same as the string option with the exception that the default value will have the following variables replaced within it: $USER_DATA The path to the users data directory $DATA_PAT...

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58.666667

0.020503