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README.md
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## Dataset Details
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### Dataset Description
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- **Curated by:** Frank Soboczenski
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- **Funded by [optional]:** [More Information Needed]
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- **Shared by [optional]:** [More Information Needed]
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- **Language(s) (NLP):** [More Information Needed]
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<!-- Provide the basic links for the dataset. -->
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- **Repository:**
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- **Paper [optional]:** [More Information Needed]
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- **Demo [optional]:** [More Information Needed]
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##
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###
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[More Information Needed]
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### Out-of-Scope Use
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<!-- This section addresses misuse, malicious use, and uses that the dataset will not work well for. -->
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[More Information Needed]
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## Dataset Structure
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[More Information Needed]
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##
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### Curation Rationale
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<!-- Motivation for the creation of this dataset. -->
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[More Information Needed]
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### Source Data
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<!-- This section describes the source data (e.g. news text and headlines, social media posts, translated sentences, ...). -->
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#### Data Collection and Processing
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<!-- This section describes the data collection and processing process such as data selection criteria, filtering and normalization methods, tools and libraries used, etc. -->
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[More Information Needed]
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#### Who are the source data producers?
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<!-- This section describes the people or systems who originally created the data. It should also include self-reported demographic or identity information for the source data creators if this information is available. -->
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[More Information Needed]
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### Annotations [optional]
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<!-- If the dataset contains annotations which are not part of the initial data collection, use this section to describe them. -->
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#### Annotation process
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<!-- This section describes the annotation process such as annotation tools used in the process, the amount of data annotated, annotation guidelines provided to the annotators, interannotator statistics, annotation validation, etc. -->
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[More Information Needed]
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#### Who are the annotators?
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#### Personal and Sensitive Information
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<!-- State whether the dataset contains data that might be considered personal, sensitive, or private (e.g., data that reveals addresses, uniquely identifiable names or aliases, racial or ethnic origins, sexual orientations, religious beliefs, political opinions, financial or health data, etc.). If efforts were made to anonymize the data, describe the anonymization process. -->
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[More Information Needed]
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## Bias, Risks, and Limitations
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<!-- This section is meant to convey both technical and sociotechnical limitations. -->
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[More Information Needed]
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### Recommendations
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<!-- This section is meant to convey recommendations with respect to the bias, risk, and technical limitations. -->
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Users should be made aware of the risks, biases and limitations of the dataset. More information needed for further recommendations.
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## Citation [optional]
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<!-- If there is a paper or blog post introducing the dataset, the APA and Bibtex information for that should go in this section. -->
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[More Information Needed]
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**APA:**
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[More Information Needed]
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## Glossary [optional]
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<!-- If relevant, include terms and calculations in this section that can help readers understand the dataset or dataset card. -->
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[More Information Needed]
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## More Information [optional]
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[More Information Needed]
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## Dataset Card Authors [optional]
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## Dataset Card Contact
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## Dataset Details
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This dataset is a version of the Biological and Physical Sciences (BPS) Microscopy Benchmark Training Dataset managed by NASA and hosted on an S3 Bucket here: https://registry.opendata.aws/bps_microscopy/
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Fluorescence microscopy images of individual nuclei from mouse fibroblast cells, irradiated with Fe particles or X-rays with fluorescent foci indicating 53BP1 positivity, a marker of DNA damage. These are maximum intensity projections of 9-layer microscopy Z-stacks.
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### Dataset Description
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- **Curated by:** Frank Soboczenski
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- **Funded by [optional]:** [More Information Needed]
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- **Shared by [optional]:** [More Information Needed]
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- **Language(s) (NLP):** [More Information Needed]
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<!-- Provide the basic links for the dataset. -->
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- **Repository:** https://registry.opendata.aws/bps_microscopy/
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- **Paper [optional]:** [More Information Needed]
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- **Demo [optional]:** [More Information Needed]
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## Further Documentation
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https://docs.google.com/document/d/e/2PACX-1vTIjUPenLxVX0stErsBbK884QMJW_Ur1mqHJ9K3KIZl3klT90cxHDppsEvz5Z6Skdu13X8tzghqyWcN/pub
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### Update Frequency
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New fluorescence microscopy mouse fibroblast nuclei data is added whenever it is available.
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## Dataset Structure
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[More Information Needed]
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## How to Cite
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Biological and Physical Sciences (BPS) Microscopy Benchmark Training Dataset was accessed on DATE from https://huggingface.co/datasets/kenobi/GeneLab_BPS_BenchmarkData
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## Licence
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There are no restrictions on the use of this data.
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## Dataset Card Authors [optional]
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Lauren Sanders
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## Dataset Card Contact
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Frank.Soboczenski@york.ac.uk
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