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  1. README.md +111 -3
  2. do2_fewshot/README.md +65 -0
  3. do2_fewshot/mock/test/images/ID00140637202231728595149_30.jpg +3 -0
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  15. do2_fewshot/private/test/test.csv +3 -0
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  24. do2_fewshot/private/train/train.csv +5 -0
  25. do3_lora/README.md +67 -0
  26. do3_lora/mock/test/images/ID00111637202210956877205_179.jpg +3 -0
  27. do3_lora/mock/test/images/ID00255637202267923028520_25.jpg +3 -0
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README.md CHANGED
@@ -1,3 +1,111 @@
1
- ---
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- license: apache-2.0
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- ---
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ # Chest CT Segmentation - Federated Learning Partitions
2
+
3
+ Dataset partitions for **Federated SAM2-LoRA** medical image segmentation across multiple Data Owners.
4
+
5
+ ## Overview
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+
7
+ This dataset contains partitioned chest CT scans for federated learning with heterogeneous clients:
8
+
9
+ | Data Owner | Type | Training Method | Contributes to FedAvg |
10
+ |------------|------|-----------------|----------------------|
11
+ | DO1 | Zero-shot | CLIP text prompts | No |
12
+ | DO2 | Few-shot | Memory bank | No |
13
+ | DO3 | LoRA | Gradient training | Yes |
14
+ | DO4 | LoRA | Gradient training | Yes |
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+
16
+ ## Statistics
17
+
18
+ | Partition | Private (train/test) | Mock (train/test) | Patients |
19
+ |-----------|---------------------|-------------------|----------|
20
+ | do2_fewshot | 4 / 2 | 2 / 1 | 6 |
21
+ | do3_lora | 16 / 4 | 8 / 2 | 20 |
22
+ | do4_lora | 14 / 4 | 7 / 2 | 18 |
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+
24
+ - **Total images**: 44 private + 22 mock = 66 images
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+ - **Total patients**: 44 unique (1 image per patient, no overlap between DOs)
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+ - **Mock data**: Half of private data for testing/simulation
27
+
28
+ ## Structure
29
+
30
+ ```
31
+ hf_partitions/
32
+ ├── do2_fewshot/
33
+ │ ├── mock/
34
+ │ │ ├── train/
35
+ │ │ │ ├── images/
36
+ │ │ │ ├── masks/
37
+ │ │ │ └── train.csv
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+ │ │ └── test/
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+ │ │ ├── images/
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+ │ │ ├── masks/
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+ │ │ └── test.csv
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+ │ ├── private/
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+ │ │ ├── train/
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+ │ │ └── test/
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+ │ └── README.md
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+ ├── do3_lora/
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+ │ ├── mock/
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+ │ ├── private/
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+ │ └── README.md
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+ ├── do4_lora/
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+ │ ├── mock/
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+ │ ├── private/
53
+ │ └── README.md
54
+ └── README.md
55
+ ```
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+
57
+ ## Usage
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+
59
+ ### Download All Partitions
60
+ ```python
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+ from huggingface_hub import snapshot_download
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+
63
+ snapshot_download(
64
+ repo_id="khoaguin/chest-ct-segmentation",
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+ repo_type="dataset",
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+ local_dir="./dataset"
67
+ )
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+ ```
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+
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+ ### Download Specific DO Partition
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+ ```python
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+ # Download only DO3 (LoRA) partition
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+ snapshot_download(
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+ repo_id="khoaguin/chest-ct-segmentation",
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+ repo_type="dataset",
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+ allow_patterns="do3_lora/**",
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+ local_dir="./dataset"
78
+ )
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+ ```
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+
81
+ ### Download Mock Data Only (for testing)
82
+ ```python
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+ # Download mock data for all DOs
84
+ snapshot_download(
85
+ repo_id="khoaguin/chest-ct-segmentation",
86
+ repo_type="dataset",
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+ allow_patterns="*/mock/**",
88
+ local_dir="./dataset"
89
+ )
90
+ ```
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+
92
+ ## Data Format
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+
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+ - **Images**: RGB JPEG chest CT slices
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+ - **Masks**: Binary segmentation masks (lung/tissue regions)
96
+ - **CSV**: Mapping between ImageId and MaskId
97
+
98
+ ### CSV Format
99
+ ```csv
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+ ImageId,MaskId
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+ ID00131637202220424084844_30.jpg,ID00131637202220424084844_mask_30.jpg
102
+ ```
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+
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+ ## Related
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+
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+ - [FL-SAM2-LoRA Project](https://github.com/OpenMined/fl-sam2-lora)
107
+ - [Original Dataset](https://www.kaggle.com/datasets/polomarco/chest-ct-segmentation)
108
+
109
+ ## License
110
+
111
+ Please refer to the original dataset license for usage terms.
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1
+ # DO2 Few-shot - Chest CT Segmentation
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+
3
+ Dataset partition for **Data Owner 2 (Few-shot)** in Federated SAM2-LoRA.
4
+
5
+ ## Client Configuration
6
+
7
+ | Property | Value |
8
+ |----------|-------|
9
+ | Type | Few-shot |
10
+ | Training Method | Memory bank (similarity-based) |
11
+ | Gradient Training | No |
12
+ | Contributes to FedAvg | No |
13
+
14
+ ## Statistics
15
+
16
+ | Split | Mock | Private |
17
+ |-------|------|---------|
18
+ | Train | 2 (2 patients) | 4 (4 patients) |
19
+ | Test | 1 (1 patient) | 2 (2 patients) |
20
+
21
+ **Total: 6 unique patients (1 image per patient)**
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+
23
+ ## Structure
24
+
25
+ ```
26
+ do2_fewshot/
27
+ ├── mock/
28
+ │ ├── train/
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+ │ │ ├── images/ (2 images)
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+ │ │ ├── masks/ (2 masks)
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+ │ │ └── train.csv
32
+ │ └── test/
33
+ │ ├── images/ (1 image)
34
+ │ ├── masks/ (1 mask)
35
+ │ └── test.csv
36
+ ├── private/
37
+ │ ├── train/
38
+ │ │ ├── images/ (4 images)
39
+ │ │ ├── masks/ (4 masks)
40
+ │ │ └── train.csv
41
+ │ └── test/
42
+ │ ├── images/ (2 images)
43
+ │ ├── masks/ (2 masks)
44
+ │ └── test.csv
45
+ └── README.md
46
+ ```
47
+
48
+ ## Usage
49
+
50
+ ```python
51
+ from huggingface_hub import snapshot_download
52
+
53
+ # Download this partition
54
+ snapshot_download(
55
+ repo_id="khoaguin/chest-ct-segmentation",
56
+ repo_type="dataset",
57
+ allow_patterns="do2_fewshot/**",
58
+ local_dir="./dataset"
59
+ )
60
+ ```
61
+
62
+ ## Related
63
+
64
+ - [DO3 LoRA](../do3_lora/) - Full LoRA training (16 train, 4 test)
65
+ - [DO4 LoRA](../do4_lora/) - Full LoRA training (14 train, 4 test)
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+ ImageId,MaskId
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+ ID00131637202220424084844_30.jpg,ID00131637202220424084844_mask_30.jpg
3
+ ID00249637202266730854017_190.jpg,ID00249637202266730854017_mask_190.jpg
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1
+ # DO3 LoRA - Chest CT Segmentation
2
+
3
+ Dataset partition for **Data Owner 3 (LoRA)** in Federated SAM2-LoRA.
4
+
5
+ ## Client Configuration
6
+
7
+ | Property | Value |
8
+ |----------|-------|
9
+ | Type | LoRA |
10
+ | Training Method | Gradient-based fine-tuning |
11
+ | LoRA Rank | 16 |
12
+ | Learning Rate | 1e-4 |
13
+ | Augmentation | Enabled |
14
+ | Contributes to FedAvg | Yes |
15
+
16
+ ## Statistics
17
+
18
+ | Split | Mock | Private |
19
+ |-------|------|---------|
20
+ | Train | 8 (8 patients) | 16 (16 patients) |
21
+ | Test | 2 (2 patients) | 4 (4 patients) |
22
+
23
+ **Total: 20 unique patients (1 image per patient)**
24
+
25
+ ## Structure
26
+
27
+ ```
28
+ do3_lora/
29
+ ├── mock/
30
+ │ ├── train/
31
+ │ │ ├── images/ (8 images)
32
+ │ │ ├── masks/ (8 masks)
33
+ │ │ └── train.csv
34
+ │ └── test/
35
+ │ ├── images/ (2 images)
36
+ │ ├── masks/ (2 masks)
37
+ │ └── test.csv
38
+ ├── private/
39
+ │ ├── train/
40
+ │ │ ├── images/ (16 images)
41
+ │ │ ├── masks/ (16 masks)
42
+ │ │ └── train.csv
43
+ │ └── test/
44
+ │ ├── images/ (4 images)
45
+ │ ├── masks/ (4 masks)
46
+ │ └── test.csv
47
+ └── README.md
48
+ ```
49
+
50
+ ## Usage
51
+
52
+ ```python
53
+ from huggingface_hub import snapshot_download
54
+
55
+ # Download this partition
56
+ snapshot_download(
57
+ repo_id="khoaguin/chest-ct-segmentation",
58
+ repo_type="dataset",
59
+ allow_patterns="do3_lora/**",
60
+ local_dir="./dataset"
61
+ )
62
+ ```
63
+
64
+ ## Related
65
+
66
+ - [DO2 Few-shot](../do2_fewshot/) - Few-shot learning (4 train, 2 test)
67
+ - [DO4 LoRA](../do4_lora/) - Full LoRA training (14 train, 4 test)
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Git LFS Details

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Git LFS Details

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Git LFS Details

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Git LFS Details

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do3_lora/mock/train/images/ID00207637202252526380974_40.jpg ADDED

Git LFS Details

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Git LFS Details

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Git LFS Details

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Git LFS Details

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Git LFS Details

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Git LFS Details

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Git LFS Details

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Git LFS Details

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Git LFS Details

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Git LFS Details

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Git LFS Details

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Git LFS Details

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do3_lora/mock/train/train.csv ADDED
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+ ImageId,MaskId
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Git LFS Details

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Git LFS Details

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Git LFS Details

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