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- .gitattributes +12 -0
- celegans_large/P0/P0-cell_to_leaf_df.csv +0 -0
- celegans_large/P0/exprs_df_cache.pkl +3 -0
- celegans_large/P0/p0-topology_tree.nwk +1 -0
- celegans_large/raw/GSE126954_cell_annotation.csv +3 -0
- celegans_large/raw/GSE126954_gene_annotation.csv +0 -0
- celegans_large/raw/GSE126954_gene_by_cell_count_matrix.txt +3 -0
- celegans_large/raw/celegans_1.nwk +1 -0
- celegans_mid/P0/exprs_df_cache.pkl +3 -0
- celegans_mid/P0/p0-topology_tree.nwk +1 -0
- celegans_mid/raw/c_elegans_cell_meta.csv +3 -0
- celegans_mid/raw/c_elegans_expression_df.csv +3 -0
- celegans_small/P0/P0-ncells.txt +206 -0
- celegans_small/P0/P0.txt +206 -0
- celegans_small/P0/celegans_p0_quartet_distance_map.pkl +3 -0
- celegans_small/P0/exprs_df_cache.pkl +3 -0
- celegans_small/P0/exprs_df_cache.pkl.bk +3 -0
- celegans_small/P0/tree_df-P0.csv +263 -0
- celegans_small/raw/ABpxpp-tree.csv +64 -0
- celegans_small/raw/CellTable.csv +0 -0
- celegans_small/raw/cell_barcodes.csv +0 -0
- celegans_small/raw/download.sh +2 -0
- celegans_small/raw/exprs.mm +3 -0
- celegans_small/raw/exprs_normalized.mm +3 -0
- celegans_small/raw/genes.csv +0 -0
- celegans_small/raw/metadata.csv +3 -0
- celegans_small/raw/tree_df/ABalapx-ncells.txt +12 -0
- celegans_small/raw/tree_df/ABalapx.txt +12 -0
- celegans_small/raw/tree_df/ABalpax-ncells.txt +2 -0
- celegans_small/raw/tree_df/ABalpax.txt +2 -0
- celegans_small/raw/tree_df/ABalppa-ncells.txt +2 -0
- celegans_small/raw/tree_df/ABalppa.txt +2 -0
- celegans_small/raw/tree_df/ABaraax-ncells.txt +14 -0
- celegans_small/raw/tree_df/ABaraax.txt +14 -0
- celegans_small/raw/tree_df/ABarapa-ncells.txt +2 -0
- celegans_small/raw/tree_df/ABarapa.txt +2 -0
- celegans_small/raw/tree_df/ABaxx-ncells.txt +22 -0
- celegans_small/raw/tree_df/ABaxx.txt +22 -0
- celegans_small/raw/tree_df/ABpxax-ncells.txt +54 -0
- celegans_small/raw/tree_df/ABpxax.txt +54 -0
- celegans_small/raw/tree_df/ABpxp-ncells.txt +78 -0
- celegans_small/raw/tree_df/ABpxp.txt +78 -0
- celegans_small/raw/tree_df/Cx-ncells.txt +32 -0
- celegans_small/raw/tree_df/Cx.txt +32 -0
- celegans_small/raw/tree_df/Dx-ncells.txt +10 -0
- celegans_small/raw/tree_df/Dx.txt +10 -0
- celegans_small/raw/tree_df/Exx-ncells.txt +8 -0
- celegans_small/raw/tree_df/Exx.txt +8 -0
- celegans_small/raw/tree_df/MSx-ncells.txt +60 -0
- celegans_small/raw/tree_df/MSx.txt +60 -0
.gitattributes
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celegans_large/raw/GSE126954_cell_annotation.csv filter=lfs diff=lfs merge=lfs -text
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celegans_large/raw/GSE126954_gene_by_cell_count_matrix.txt filter=lfs diff=lfs merge=lfs -text
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celegans_mid/raw/c_elegans_cell_meta.csv filter=lfs diff=lfs merge=lfs -text
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celegans_mid/raw/c_elegans_expression_df.csv filter=lfs diff=lfs merge=lfs -text
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celegans_small/P0/exprs_df_cache.pkl.bk filter=lfs diff=lfs merge=lfs -text
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celegans_small/raw/exprs.mm filter=lfs diff=lfs merge=lfs -text
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celegans_small/raw/exprs_normalized.mm filter=lfs diff=lfs merge=lfs -text
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celegans_small/raw/metadata.csv filter=lfs diff=lfs merge=lfs -text
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raw/celegans_chris/cds_filt_exprs.mm filter=lfs diff=lfs merge=lfs -text
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raw/celegans_chris/coldata_df.csv filter=lfs diff=lfs merge=lfs -text
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raw/celegans_packer/GSE126954_cell_annotation.csv filter=lfs diff=lfs merge=lfs -text
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raw/celegans_packer/GSE126954_gene_by_cell_count_matrix.txt filter=lfs diff=lfs merge=lfs -text
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celegans_large/P0/P0-cell_to_leaf_df.csv
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celegans_large/P0/exprs_df_cache.pkl
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celegans_large/P0/p0-topology_tree.nwk
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celegans_large/raw/GSE126954_cell_annotation.csv
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celegans_large/raw/GSE126954_gene_annotation.csv
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celegans_large/raw/GSE126954_gene_by_cell_count_matrix.txt
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|
celegans_mid/P0/exprs_df_cache.pkl
ADDED
|
@@ -0,0 +1,3 @@
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|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:baa2b3afecab97cf45ab622e0a01fa62400eadb86cccd800bbaa91cee2418037
|
| 3 |
+
size 4020218793
|
celegans_mid/P0/p0-topology_tree.nwk
ADDED
|
@@ -0,0 +1 @@
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|
|
|
|
|
|
| 1 |
+
(((((((((ABALAAAALA:1.0,ABALAAAALP:1.0)ABALAAAAL_ABALAAAAL:1.0,ABALAAAARL:2.0)ABALAAAA_ABALAAAA:1.0,((ABALAAAPAL:1.0,ABALAAAPAR:1.0)ABALAAAPA_ABALAAAPA:1.0,ABALAAAPP:1.0)ABALAAAP_ABALAAAP:1.0)ABALAAA_ABALAAA:1.0,((ABALAAPAA:1.0,ABALAAPAPP:2.0)ABALAAPA_ABALAAPA:1.0,(ABALAAPPAP:2.0,ABALAAPPPA:2.0)ABALAAPP_ABALAAPP:1.0)ABALAAP_ABALAAP:1.0)ABALAA_ABALAA:1.0,((((ABALAPAAAA:1.0,ABALAPAAAP:1.0)ABALAPAAA_ABALAPAAA:1.0,ABALAPAAP:1.0)ABALAPAA_ABALAPAA:1.0,ABALAPAPPP:3.0)ABALAPA_ABALAPA:1.0,((ABALAPPAAP:2.0,ABALAPPAP:1.0)ABALAPPA_ABALAPPA:1.0,(ABALAPPPAA:2.0,ABALAPPPP:1.0)ABALAPPP_ABALAPPP:1.0)ABALAPP_ABALAPP:1.0)ABALAP_ABALAP:1.0)ABALA_ABALA:1.0,(((((ABALPAAAAA:1.0,ABALPAAAAP:1.0)ABALPAAAA_ABALPAAAA:1.0,ABALPAAAP:1.0)ABALPAAA_ABALPAAA:1.0,((ABALPAAPAA:1.0,ABALPAAPAP:1.0)ABALPAAPA_ABALPAAPA:1.0,(ABALPAAPPA:1.0,ABALPAAPPP:1.0)ABALPAAPP_ABALPAAPP:1.0)ABALPAAP_ABALPAAP:1.0)ABALPAA_ABALPAA:1.0,((ABALPAPAAA:2.0,ABALPAPAP:1.0)ABALPAPA_ABALPAPA:1.0,(ABALPAPPAP:2.0,(ABALPAPPPA:1.0,ABALPAPPPP:1.0)ABALPAPPP_ABALPAPPP:1.0)ABALPAPP_ABALPAPP:1.0)ABALPAP_ABALPAP:1.0)ABALPA_ABALPA:1.0,((ABALPPAA:1.0,((ABALPPAPAA:1.0,ABALPPAPAP:1.0)ABALPPAPA_ABALPPAPA:1.0,ABALPPAPPA:2.0)ABALPPAP_ABALPPAP:1.0)ABALPPA_ABALPPA:1.0,(((ABALPPPAAA:1.0,ABALPPPAAP:1.0)ABALPPPAA_ABALPPPAA:1.0,ABALPPPAPA:2.0)ABALPPPA_ABALPPPA:1.0,(ABALPPPPAA:2.0,(ABALPPPPPA:1.0,ABALPPPPPP:1.0)ABALPPPPP_ABALPPPPP:1.0)ABALPPPP_ABALPPPP:1.0)ABALPPP_ABALPPP:1.0)ABALPP_ABALPP:1.0)ABALP_ABALP:1.0)ABAL_ABAL:1.0,(((((ABARAAAAAA:2.0,ABARAAAAPA:2.0)ABARAAAA_ABARAAAA:1.0,(ABARAAAPA:1.0,ABARAAAPP:1.0)ABARAAAP_ABARAAAP:1.0)ABARAAA_ABARAAA:1.0,(((ABARAAPAAA:1.0,ABARAAPAAP:1.0)ABARAAPAA_ABARAAPAA:1.0,ABARAAPAPP:2.0)ABARAAPA_ABARAAPA:1.0,(ABARAAPPAA:2.0,ABARAAPPP:1.0)ABARAAPP_ABARAAPP:1.0)ABARAAP_ABARAAP:1.0)ABARAA_ABARAA:1.0,((ABARAPAAA:2.0,(ABARAPAPAP:2.0,ABARAPAPP:1.0)ABARAPAP_ABARAPAP:1.0)ABARAPA_ABARAPA:1.0,(ABARAPPAA:2.0,(ABARAPPPA:1.0,ABARAPPPP:1.0)ABARAPPP_ABARAPPP:1.0)ABARAPP_ABARAPP:1.0)ABARAP_ABARAP:1.0)ABARA_ABARA:1.0,(((ABARPAAAAP:3.0,ABARPAAPA:2.0)ABARPAA_ABARPAA:1.0,((ABARPAPAAA:2.0,ABARPAPAP:1.0)ABARPAPA_ABARPAPA:1.0,(ABARPAPPA:1.0,ABARPAPPP:1.0)ABARPAPP_ABARPAPP:1.0)ABARPAP_ABARPAP:1.0)ABARPA_ABARPA:1.0,(((ABARPPAAA:1.0,ABARPPAAPP:2.0)ABARPPAA_ABARPPAA:1.0,(ABARPPAPA:1.0,ABARPPAPP:1.0)ABARPPAP_ABARPPAP:1.0)ABARPPA_ABARPPA:1.0,(ABARPPPA:1.0,ABARPPPP:1.0)ABARPPP_ABARPPP:1.0)ABARPP_ABARPP:1.0)ABARP_ABARP:1.0)ABAR_ABAR:1.0)ABA_ABA:1.0,(((((ABPLAAAAA:2.0,ABPLAAAP:1.0)ABPLAAA_ABPLAAA:1.0,(((ABPLAAPAAA:1.0,ABPLAAPAAP:1.0)ABPLAAPAA_ABPLAAPAA:1.0,ABPLAAPAPA:2.0)ABPLAAPA_ABPLAAPA:1.0,(ABPLAAPPA:1.0,ABPLAAPPP:1.0)ABPLAAPP_ABPLAAPP:1.0)ABPLAAP_ABPLAAP:1.0)ABPLAA_ABPLAA:1.0,(((ABPLAPAAAPA:3.0,ABPLAPAAP:1.0)ABPLAPAA_ABPLAPAA:1.0,ABPLAPAPAA:3.0)ABPLAPA_ABPLAPA:1.0,((ABPLAPPAA:1.0,ABPLAPPAP:1.0)ABPLAPPA_ABPLAPPA:1.0,(ABPLAPPPAA:2.0,ABPLAPPPP:1.0)ABPLAPPP_ABPLAPPP:1.0)ABPLAPP_ABPLAPP:1.0)ABPLAP_ABPLAP:1.0)ABPLA_ABPLA:1.0,(((((ABPLPAAAAA:1.0,ABPLPAAAAP:1.0)ABPLPAAAA_ABPLPAAAA:1.0,ABPLPAAAPA:2.0)ABPLPAAA_ABPLPAAA:1.0,((ABPLPAAPAA:1.0,ABPLPAAPAP:1.0)ABPLPAAPA_ABPLPAAPA:1.0,ABPLPAAPPA:2.0)ABPLPAAP_ABPLPAAP:1.0)ABPLPAA_ABPLPAA:1.0,((ABPLPAPAAA:2.0,(ABPLPAPAPA:1.0,ABPLPAPAPP:1.0)ABPLPAPAP_ABPLPAPAP:1.0)ABPLPAPA_ABPLPAPA:1.0,(ABPLPAPPAA:2.0,(ABPLPAPPPA:1.0,ABPLPAPPPP:1.0)ABPLPAPPP_ABPLPAPPP:1.0)ABPLPAPP_ABPLPAPP:1.0)ABPLPAP_ABPLPAP:1.0)ABPLPA_ABPLPA:1.0,(((ABPLPPAAPA:1.0,ABPLPPAAPP:1.0)ABPLPPAAP_ABPLPPAAP:2.0,(ABPLPPAPAP:2.0,(ABPLPPAPPA:1.0,ABPLPPAPPP:1.0)ABPLPPAPP_ABPLPPAPP:1.0)ABPLPPAP_ABPLPPAP:1.0)ABPLPPA_ABPLPPA:1.0,((ABPLPPPAAA:2.0,ABPLPPPAPA:2.0)ABPLPPPA_ABPLPPPA:1.0,((ABPLPPPPAA:1.0,ABPLPPPPAP:1.0)ABPLPPPPA_ABPLPPPPA:1.0,(ABPLPPPPPA:1.0,ABPLPPPPPP:1.0)ABPLPPPPP_ABPLPPPPP:1.0)ABPLPPPP_ABPLPPPP:1.0)ABPLPPP_ABPLPPP:1.0)ABPLPP_ABPLPP:1.0)ABPLP_ABPLP:1.0)ABPL_ABPL:1.0,(((((ABPRAAAAA:1.0,ABPRAAAAP:1.0)ABPRAAAA_ABPRAAAA:1.0,ABPRAAAPA:2.0)ABPRAAA_ABPRAAA:1.0,(ABPRAAPAP:2.0,ABPRAAPP:1.0)ABPRAAP_ABPRAAP:1.0)ABPRAA_ABPRAA:1.0,((ABPRAPAAA:2.0,ABPRAPAP:1.0)ABPRAPA_ABPRAPA:1.0,(ABPRAPPA:1.0,ABPRAPPPA:2.0)ABPRAPP_ABPRAPP:1.0)ABPRAP_ABPRAP:1.0)ABPRA_ABPRA:1.0,((((ABPRPAAAA:1.0,ABPRPAAAP:1.0)ABPRPAAA_ABPRPAAA:1.0,(ABPRPAAPA:1.0,ABPRPAAPP:1.0)ABPRPAAP_ABPRPAAP:1.0)ABPRPAA_ABPRPAA:1.0,((ABPRPAPAA:1.0,ABPRPAPAP:1.0)ABPRPAPA_ABPRPAPA:1.0,((ABPRPAPPAA:1.0,ABPRPAPPAP:1.0)ABPRPAPPA_ABPRPAPPA:1.0,(ABPRPAPPPA:1.0,ABPRPAPPPP:1.0)ABPRPAPPP_ABPRPAPPP:1.0)ABPRPAPP_ABPRPAPP:1.0)ABPRPAP_ABPRPAP:1.0)ABPRPA_ABPRPA:1.0,((ABPRPPAAP:2.0,(ABPRPPAPA:1.0,ABPRPPAPP:1.0)ABPRPPAP_ABPRPPAP:1.0)ABPRPPA_ABPRPPA:1.0,(ABPRPPPAA:2.0,(ABPRPPPPA:1.0,ABPRPPPPP:1.0)ABPRPPPP_ABPRPPPP:1.0)ABPRPPP_ABPRPPP:1.0)ABPRPP_ABPRPP:1.0)ABPRP_ABPRP:1.0)ABPR_ABPR:1.0)ABP_ABP:1.0)P0A_P0A:1.0,(((EALP:2.0,EAR:1.0)EA_EA:2.0,(((((MSAAAAAA:2.0,(MSAAAAPA:1.0,MSAAAAPP:1.0)MSAAAAP_MSAAAAP:1.0)MSAAAA_MSAAAA:1.0,((MSAAAPAA:1.0,MSAAAPAP:1.0)MSAAAPA_MSAAAPA:1.0,MSAAAPP:1.0)MSAAAP_MSAAAP:1.0)MSAAA_MSAAA:1.0,((MSAAPAAA:2.0,(MSAAPAPA:1.0,MSAAPAPP:1.0)MSAAPAP_MSAAPAP:1.0)MSAAPA_MSAAPA:1.0,(MSAAPPA:1.0,(MSAAPPPA:1.0,MSAAPPPP:1.0)MSAAPPP_MSAAPPP:1.0)MSAAPP_MSAAPP:1.0)MSAAP_MSAAP:1.0)MSAA_MSAA:1.0,(((MSAPAAAA:2.0,MSAPAAP:1.0)MSAPAA_MSAPAA:1.0,(MSAPAPAA:2.0,MSAPAPP:1.0)MSAPAP_MSAPAP:1.0)MSAPA_MSAPA:1.0,((MSAPPAA:1.0,MSAPPAP:1.0)MSAPPA_MSAPPA:1.0,(MSAPPPA:1.0,MSAPPPP:1.0)MSAPPP_MSAPPP:1.0)MSAPP_MSAPP:1.0)MSAP_MSAP:1.0)MSA_MSA:1.0,(((((MSPAAAAA:1.0,MSPAAAAP:1.0)MSPAAAA_MSPAAAA:1.0,(MSPAAAPA:1.0,MSPAAAPP:1.0)MSPAAAP_MSPAAAP:1.0)MSPAAA_MSPAAA:1.0,MSPAAPAA:3.0)MSPAA_MSPAA:1.0,((MSPAPAA:1.0,MSPAPAP:1.0)MSPAPA_MSPAPA:1.0,(MSPAPPA:1.0,MSPAPPP:1.0)MSPAPP_MSPAPP:1.0)MSPAP_MSPAP:1.0)MSPA_MSPA:1.0,((MSPPAA:1.0,MSPPAP:1.0)MSPPA_MSPPA:1.0,(MSPPPA:1.0,MSPPPP:1.0)MSPPP_MSPPP:1.0)MSPP_MSPP:1.0)MSP_MSP:1.0)MS_MS:1.0)EMS_EMS:1.0,((((CAAAA:2.0,(CAAPA:1.0,CAAPP:1.0)CAAP_CAAP:1.0)CAA_CAA:1.0,(((CAPAAA:1.0,CAPAAP:1.0)CAPAA_CAPAA:1.0,(CAPAPA:1.0,CAPAPP:1.0)CAPAP_CAPAP:1.0)CAPA_CAPA:1.0,(CAPPAA:2.0,(CAPPPA:1.0,CAPPPP:1.0)CAPPP_CAPPP:1.0)CAPP_CAPP:1.0)CAP_CAP:1.0)CA_CA:1.0,((CPAA:1.0,CPAPA:2.0)CPA_CPA:1.0,((CPPAA:1.0,CPPAP:1.0)CPPA_CPPA:1.0,(CPPPA:1.0,CPPPP:1.0)CPPP_CPPP:1.0)CPP_CPP:1.0)CP_CP:1.0)C_C:1.0,((DAAA:1.0,DAAP:1.0)DAA_DAA:2.0,DPA:2.0)D_D:2.0)P2_P2:1.0)P1_P1:1.0)zygote_zygote:1.0;
|
celegans_mid/raw/c_elegans_cell_meta.csv
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:797553892b86d893a880ef11b856a485e42f65afcfd1ff0c46e85bc1b7f83b0f
|
| 3 |
+
size 14226883
|
celegans_mid/raw/c_elegans_expression_df.csv
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:2cdda3307f839f334d20e9a4981a59077376c66d7ba42fbd9c4b3e8fc17254bb
|
| 3 |
+
size 1005942081
|
celegans_small/P0/P0-ncells.txt
ADDED
|
@@ -0,0 +1,206 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
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|
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|
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|
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|
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|
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|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
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|
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|
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|
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|
|
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|
|
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|
|
|
|
|
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|
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|
|
|
|
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|
|
|
|
|
|
|
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|
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|
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|
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|
|
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|
|
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|
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|
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|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
|
| 2 |
+
/ABpxpaaaaa, 195-ABpxpaaaaap, 180
|
| 3 |
+
/ABpxpaaaa, 62
|
| 4 |
+
| \ABpxpaaaap, 176-ABpxpaaaapa, 65
|
| 5 |
+
/ABpxpaaa, 42
|
| 6 |
+
| | /-ABpxpaaapa, 115
|
| 7 |
+
| \ABpxpaaap, 50
|
| 8 |
+
| \-ABpxpaaapp, 207
|
| 9 |
+
|
|
| 10 |
+
/ABpxpaa, 10 /-ABpxpaapaap, 114
|
| 11 |
+
| | /ABpxpaapaa, 212
|
| 12 |
+
| | /ABpxpaapa, 72 \-ABpxpaapaaa, 124
|
| 13 |
+
| | | |
|
| 14 |
+
| | | \ABpxpaapap, 126-ABpxpaapapa, 111
|
| 15 |
+
| \ABpxpaap, 37
|
| 16 |
+
| | /-ABpxpaappaa, 212
|
| 17 |
+
| | /ABpxpaappa, 115
|
| 18 |
+
/ABpxpa, 13 \ABpxpaapp, 45 \-ABpxpaappap, 32
|
| 19 |
+
| | |
|
| 20 |
+
| | \ABpxpaappp, 184-ABpxpaapppa, 59
|
| 21 |
+
| |
|
| 22 |
+
| | /ABplpappa, 29ABplpappaa, 42-ABplpappaap, 103
|
| 23 |
+
| | /ABplpapp, 17
|
| 24 |
+
| | | | /ABplpapppa, 45-ABplpapppax, 39
|
| 25 |
+
| | | \ABplpappp, 51
|
| 26 |
+
| | | \ABplpapppp, 39-ABplpappppa, 16
|
| 27 |
+
| \ABpxpap, 9
|
| 28 |
+
| | /-ABprpappaap, 69
|
| 29 |
+
| | /ABprpappaa, 51
|
| 30 |
+
| | /ABprpappa, 55 \-ABprpappaaa, 30
|
| 31 |
+
| | | |
|
| 32 |
+
| \ABprpapp, 15 \ABprpappap, 57-ABprpappapa, 43
|
| 33 |
+
| |
|
| 34 |
+
/ABpxp, 12 | /ABprpapppa, 60-ABprpapppap, 77
|
| 35 |
+
| | \ABprpappp, 42
|
| 36 |
+
| | \-ABprpapppp, 37
|
| 37 |
+
| |
|
| 38 |
+
| | /ABpxppaaa, 118ABpxppaaaa, 134ABpxppaaaap, 222-ABpxppaaaapp, 36
|
| 39 |
+
| | /ABpxppaa, 51
|
| 40 |
+
| | | | /ABpxppaapa, 133-ABpxppaapap, 100
|
| 41 |
+
| | | \ABpxppaap, 67
|
| 42 |
+
| | | \-ABpxppaapp, 156
|
| 43 |
+
| | /ABpxppa, 17
|
| 44 |
+
| | | | /-ABpxppapaa, 234
|
| 45 |
+
| | | | /ABpxppapa, 104
|
| 46 |
+
| | | | | \-ABpxppapap, 145
|
| 47 |
+
| | | \ABpxppap, 28
|
| 48 |
+
| | | | /-ABpxppappa, 173
|
| 49 |
+
| | | \ABpxppapp, 70
|
| 50 |
+
| \ABpxpp, 9 \-ABpxppappp, 219
|
| 51 |
+
| |
|
| 52 |
+
| | /ABpxpppaaa, 175-ABprpppaaaa, 43
|
| 53 |
+
| | /ABpxpppaa, 47
|
| 54 |
+
| | /ABpxpppa, 67 \ABpxpppaap, 135-ABpxpppaapa, 138
|
| 55 |
+
| | | |
|
| 56 |
+
| | | \ABpxpppap, 88-ABpxpppapa, 95
|
| 57 |
+
| | |
|
| 58 |
+
| \ABpxppp, 24 /ABpxppppaa, 169-ABpxppppaaa, 55
|
| 59 |
+
| | /ABpxppppa, 65
|
| 60 |
+
| | | | /-ABplppppapx, 46
|
| 61 |
+
| | | \ABpxppppap, 148
|
| 62 |
+
/ABPx, 0 | | | /-ABprppppapa, 35
|
| 63 |
+
| | \ABpxpppp, 31 \ABprppppap, 0
|
| 64 |
+
| | | \-ABprppppapp, 48
|
| 65 |
+
| | |
|
| 66 |
+
| | | /-ABpxpppppa, 102
|
| 67 |
+
| | \ABpxppppp, 76
|
| 68 |
+
| | \-ABpxpppppp, 86
|
| 69 |
+
| |
|
| 70 |
+
| | /ABpxaapaaa, 184-ABpxaapaaaa, 94
|
| 71 |
+
| | /ABpxaapaa, 98
|
| 72 |
+
| | | | /-ABpxaapaapp, 216
|
| 73 |
+
| | | \ABpxaapaap, 169
|
| 74 |
+
| | | \-ABpxaapaapa, 79
|
| 75 |
+
| | /ABpxaapa, 53
|
| 76 |
+
| | | | /-ABpxaapapap, 51
|
| 77 |
+
| | | | /ABpxaapapa, 160
|
| 78 |
+
| | | | | \-ABpxaapapaa, 139
|
| 79 |
+
| | | \ABpxaapap, 75
|
| 80 |
+
| | | | /-ABpxaapappa, 65
|
| 81 |
+
| | /ABpxaap, 27 \ABpxaapapp, 111
|
| 82 |
+
| | | | \ABpxaapappp, 186-ABpxaapapppa, 87
|
| 83 |
+
| | | |
|
| 84 |
+
| | | | /-ABpxaappaa, 132
|
| 85 |
+
| | | | /ABpxaappa, 56
|
| 86 |
+
| | | | | \-ABpxaappap, 154
|
| 87 |
+
| | | \ABpxaapp, 28
|
| 88 |
+
| | | | /-ABpxaapppa, 185
|
| 89 |
+
/AB, 0 | | \ABpxaappp, 38
|
| 90 |
+
| | \ABpxax, 17 \-ABpxaapppp, 202
|
| 91 |
+
| | |
|
| 92 |
+
| | | /ABpxapaaaa, 123ABpxapaaaap, 109-ABpxapaaaapa, 41
|
| 93 |
+
| | | /ABpxapaaa, 86
|
| 94 |
+
| | | | | /-ABpxapaaapav, 21
|
| 95 |
+
| | | | \ABpxapaaap, 121ABpxapaaapa, 237
|
| 96 |
+
| | | /ABpxapaa, 53 \-ABpxapaaapad, 18
|
| 97 |
+
| | | | |
|
| 98 |
+
| | | | | /-ABpxapaapa, 67
|
| 99 |
+
| | | | \ABpxapaap, 46
|
| 100 |
+
| | \ABpxapa, 7 \-ABpxapaapp, 86
|
| 101 |
+
| | |
|
| 102 |
+
| | | /-ABpxapapaa, 127
|
| 103 |
+
| | | /ABpxapapa, 64
|
| 104 |
+
| | | | \-ABpxapapap, 73
|
| 105 |
+
| | \ABpxapap, 43
|
| 106 |
+
| | | /ABpxapappp, 269-ABpxapapppp, 143
|
| 107 |
+
| | \ABpxapapp, 25
|
| 108 |
+
| | \-ABpxapappa, 168
|
| 109 |
+
| |
|
| 110 |
+
| | /ABarpaaaa, 41-ABarpaaaaa, 56
|
| 111 |
+
| | /ABarpaaa, 42
|
| 112 |
+
| | /ABarpaa, 8 \-ABarpaaap, 60
|
| 113 |
+
| | | |
|
| 114 |
+
| | | \ABarpaap, 10ABarpaapx, 43-ABarpaapaa, 92
|
| 115 |
+
| | |
|
| 116 |
+
| | | /-ABarppxaaa, 53
|
| 117 |
+
| \ABaxx, 27ABarpx, 15 /ABarppxaa, 47
|
| 118 |
+
| | | \-ABarppxaap, 88
|
| 119 |
+
| | /ABarppxa, 4
|
| 120 |
+
| | | | /ABarppxapp, 172-ABarppxappx, 34
|
| 121 |
+
| | | \ABarppxap, 44
|
| 122 |
+
| \ABarppx, 37 \-ABarppxapa, 98
|
| 123 |
+
| |
|
| 124 |
+
| | /ABarppxpa, 32-ABarppxpax, 206
|
| 125 |
+
| \ABarppxp, 22
|
| 126 |
+
| | /-ABarppxppa, 71
|
| 127 |
+
| \ABarppxpp, 71
|
| 128 |
+
| \-ABarppxppp, 62
|
| 129 |
+
|
|
| 130 |
+
| /-MSpaaaaa, 93
|
| 131 |
+
| /MSpaaaa, 39
|
| 132 |
+
| | \-MSpaaaap, 67
|
| 133 |
+
| /MSxaaa, 29
|
| 134 |
+
| | | /-MSpaaapa, 50
|
| 135 |
+
-P0, 0 | \MSpaaap, 24
|
| 136 |
+
| /MSxaa, 17 \-MSpaaapp, 58
|
| 137 |
+
| | |
|
| 138 |
+
| | | /MSxaapap, 56-MSaaapapp, 29
|
| 139 |
+
| | | /MSxaapa, 82
|
| 140 |
+
| | \MSxaap, 44 \-MSpaapaa, 82
|
| 141 |
+
| | |
|
| 142 |
+
| | \MSaaapp, 84-MSaaappp, 31
|
| 143 |
+
| /MSxa, 6
|
| 144 |
+
| | | /-MSxapaaa, 123
|
| 145 |
+
| | | /MSxapaa, 126
|
| 146 |
+
| | | | \MSxapaap, 131-MSxapaapa, 74
|
| 147 |
+
| | | /MSxapa, 27
|
| 148 |
+
| | | | | /MSxapapa, 119-MSxapapaa, 71
|
| 149 |
+
| | | | \MSxapap, 103
|
| 150 |
+
| | \MSxap, 17 \-MSxapapp, 117
|
| 151 |
+
| | |
|
| 152 |
+
| | | /-MSaappa, 111
|
| 153 |
+
| | \MSxapp, 42
|
| 154 |
+
| /MSx, 6 | /MSxapppa, 111-MSxapppax, 117
|
| 155 |
+
| | | \MSxappp, 279
|
| 156 |
+
| | | \MSxapppp, 146-MSxappppx, 133
|
| 157 |
+
| | |
|
| 158 |
+
| | | /MSxpaaa, 154-MSxpaaaa, 273
|
| 159 |
+
| | | /MSxpaa, 57
|
| 160 |
+
| | | | \MSxpaap, 0-MSxpaapp, 0
|
| 161 |
+
| | | /MSxpa, 17
|
| 162 |
+
| | | | | /MSxpapa, 160-MSxpapaa, 616
|
| 163 |
+
| | | | \MSxpap, 33
|
| 164 |
+
| | | | \MSxpapp, 199-MSxpappp, 110
|
| 165 |
+
| | | |
|
| 166 |
+
| /EMS, 0 \MSxp, 13 /-MSxppaaa, 122
|
| 167 |
+
| | | | /MSxppaa, 201
|
| 168 |
+
| | | | /MSxppa, 63 \-MSxppaap, 315
|
| 169 |
+
| | | | | |
|
| 170 |
+
| | | | | \-MSxppap, 215
|
| 171 |
+
| | | \MSxpp, 18
|
| 172 |
+
| | | | /-MSxpppaa, 94
|
| 173 |
+
| | | | /MSxpppa, 142
|
| 174 |
+
| | | \MSxppp, 24 \-MSxpppap, 98
|
| 175 |
+
| | | |
|
| 176 |
+
| | | \MSxpppp, 267-MSxppppx, 85
|
| 177 |
+
| | |
|
| 178 |
+
| | | /-Eaxaa, 85
|
| 179 |
+
| | \Exx, 12Exxx, 111
|
| 180 |
+
| | \-Epxpp, 53
|
| 181 |
+
\P1, 0
|
| 182 |
+
| /Cxaa, 8Cxaax, 42-Cxaaxp, 0
|
| 183 |
+
| |
|
| 184 |
+
| /Cxa, 6 /-Cpappv, 58
|
| 185 |
+
| | | /Cxapp, 75
|
| 186 |
+
| | \Cxap, 13 \-Cxappd, 72
|
| 187 |
+
| | |
|
| 188 |
+
| | \Cpapa, 40-Cpapax, 157
|
| 189 |
+
| /Cx, 14
|
| 190 |
+
| | | /Cxpaa, 126Cxpaaa, 105-Cxpaaax, 115
|
| 191 |
+
| | | /Cxpa, 37
|
| 192 |
+
| | | | | /Cxpapa, 108-Cxpapax, 92
|
| 193 |
+
| | | | \Cxpap, 153
|
| 194 |
+
| | \Cxp, 16 \Cxpapp, 101-Cxpappx, 93
|
| 195 |
+
| | |
|
| 196 |
+
\P2, 0 | /Cxppa, 109Cxppaa, 98-Cxppaax, 116
|
| 197 |
+
| \Cxpp, 47
|
| 198 |
+
| | /Cxpppa, 139-Cxpppax, 95
|
| 199 |
+
| \Cxppp, 125
|
| 200 |
+
| \Cxpppp, 133-Cxppppx, 153
|
| 201 |
+
|
|
| 202 |
+
| /Dxxa, 227-Dxxax, 134
|
| 203 |
+
\Dx, 28Dxx, 0
|
| 204 |
+
| /Dxppa, 90-Dxppax, 123
|
| 205 |
+
\Dxxp, 0
|
| 206 |
+
\Dxppp, 111-Dxpppx, 90
|
celegans_small/P0/P0.txt
ADDED
|
@@ -0,0 +1,206 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
|
| 2 |
+
/ABpxpaaaaa-ABpxpaaaaap
|
| 3 |
+
/ABpxpaaaa
|
| 4 |
+
| \ABpxpaaaap-ABpxpaaaapa
|
| 5 |
+
/ABpxpaaa
|
| 6 |
+
| | /-ABpxpaaapa
|
| 7 |
+
| \ABpxpaaap
|
| 8 |
+
| \-ABpxpaaapp
|
| 9 |
+
|
|
| 10 |
+
/ABpxpaa /-ABpxpaapaap
|
| 11 |
+
| | /ABpxpaapaa
|
| 12 |
+
| | /ABpxpaapa \-ABpxpaapaaa
|
| 13 |
+
| | | |
|
| 14 |
+
| | | \ABpxpaapap-ABpxpaapapa
|
| 15 |
+
| \ABpxpaap
|
| 16 |
+
| | /-ABpxpaappaa
|
| 17 |
+
| | /ABpxpaappa
|
| 18 |
+
/ABpxpa \ABpxpaapp \-ABpxpaappap
|
| 19 |
+
| | |
|
| 20 |
+
| | \ABpxpaappp-ABpxpaapppa
|
| 21 |
+
| |
|
| 22 |
+
| | /ABplpappaABplpappaa-ABplpappaap
|
| 23 |
+
| | /ABplpapp
|
| 24 |
+
| | | | /ABplpapppa-ABplpapppax
|
| 25 |
+
| | | \ABplpappp
|
| 26 |
+
| | | \ABplpapppp-ABplpappppa
|
| 27 |
+
| \ABpxpap
|
| 28 |
+
| | /-ABprpappaap
|
| 29 |
+
| | /ABprpappaa
|
| 30 |
+
| | /ABprpappa \-ABprpappaaa
|
| 31 |
+
| | | |
|
| 32 |
+
| \ABprpapp \ABprpappap-ABprpappapa
|
| 33 |
+
| |
|
| 34 |
+
/ABpxp | /ABprpapppa-ABprpapppap
|
| 35 |
+
| | \ABprpappp
|
| 36 |
+
| | \-ABprpapppp
|
| 37 |
+
| |
|
| 38 |
+
| | /ABpxppaaaABpxppaaaaABpxppaaaap-ABpxppaaaapp
|
| 39 |
+
| | /ABpxppaa
|
| 40 |
+
| | | | /ABpxppaapa-ABpxppaapap
|
| 41 |
+
| | | \ABpxppaap
|
| 42 |
+
| | | \-ABpxppaapp
|
| 43 |
+
| | /ABpxppa
|
| 44 |
+
| | | | /-ABpxppapaa
|
| 45 |
+
| | | | /ABpxppapa
|
| 46 |
+
| | | | | \-ABpxppapap
|
| 47 |
+
| | | \ABpxppap
|
| 48 |
+
| | | | /-ABpxppappa
|
| 49 |
+
| | | \ABpxppapp
|
| 50 |
+
| \ABpxpp \-ABpxppappp
|
| 51 |
+
| |
|
| 52 |
+
| | /ABpxpppaaa-ABprpppaaaa
|
| 53 |
+
| | /ABpxpppaa
|
| 54 |
+
| | /ABpxpppa \ABpxpppaap-ABpxpppaapa
|
| 55 |
+
| | | |
|
| 56 |
+
| | | \ABpxpppap-ABpxpppapa
|
| 57 |
+
| | |
|
| 58 |
+
| \ABpxppp /ABpxppppaa-ABpxppppaaa
|
| 59 |
+
| | /ABpxppppa
|
| 60 |
+
| | | | /-ABplppppapx
|
| 61 |
+
| | | \ABpxppppap
|
| 62 |
+
/ABPx | | | /-ABprppppapa
|
| 63 |
+
| | \ABpxpppp \ABprppppap
|
| 64 |
+
| | | \-ABprppppapp
|
| 65 |
+
| | |
|
| 66 |
+
| | | /-ABpxpppppa
|
| 67 |
+
| | \ABpxppppp
|
| 68 |
+
| | \-ABpxpppppp
|
| 69 |
+
| |
|
| 70 |
+
| | /ABpxaapaaa-ABpxaapaaaa
|
| 71 |
+
| | /ABpxaapaa
|
| 72 |
+
| | | | /-ABpxaapaapp
|
| 73 |
+
| | | \ABpxaapaap
|
| 74 |
+
| | | \-ABpxaapaapa
|
| 75 |
+
| | /ABpxaapa
|
| 76 |
+
| | | | /-ABpxaapapap
|
| 77 |
+
| | | | /ABpxaapapa
|
| 78 |
+
| | | | | \-ABpxaapapaa
|
| 79 |
+
| | | \ABpxaapap
|
| 80 |
+
| | | | /-ABpxaapappa
|
| 81 |
+
| | /ABpxaap \ABpxaapapp
|
| 82 |
+
| | | | \ABpxaapappp-ABpxaapapppa
|
| 83 |
+
| | | |
|
| 84 |
+
| | | | /-ABpxaappaa
|
| 85 |
+
| | | | /ABpxaappa
|
| 86 |
+
| | | | | \-ABpxaappap
|
| 87 |
+
| | | \ABpxaapp
|
| 88 |
+
| | | | /-ABpxaapppa
|
| 89 |
+
/AB | | \ABpxaappp
|
| 90 |
+
| | \ABpxax \-ABpxaapppp
|
| 91 |
+
| | |
|
| 92 |
+
| | | /ABpxapaaaaABpxapaaaap-ABpxapaaaapa
|
| 93 |
+
| | | /ABpxapaaa
|
| 94 |
+
| | | | | /-ABpxapaaapav
|
| 95 |
+
| | | | \ABpxapaaapABpxapaaapa
|
| 96 |
+
| | | /ABpxapaa \-ABpxapaaapad
|
| 97 |
+
| | | | |
|
| 98 |
+
| | | | | /-ABpxapaapa
|
| 99 |
+
| | | | \ABpxapaap
|
| 100 |
+
| | \ABpxapa \-ABpxapaapp
|
| 101 |
+
| | |
|
| 102 |
+
| | | /-ABpxapapaa
|
| 103 |
+
| | | /ABpxapapa
|
| 104 |
+
| | | | \-ABpxapapap
|
| 105 |
+
| | \ABpxapap
|
| 106 |
+
| | | /ABpxapappp-ABpxapapppp
|
| 107 |
+
| | \ABpxapapp
|
| 108 |
+
| | \-ABpxapappa
|
| 109 |
+
| |
|
| 110 |
+
| | /ABarpaaaa-ABarpaaaaa
|
| 111 |
+
| | /ABarpaaa
|
| 112 |
+
| | /ABarpaa \-ABarpaaap
|
| 113 |
+
| | | |
|
| 114 |
+
| | | \ABarpaapABarpaapx-ABarpaapaa
|
| 115 |
+
| | |
|
| 116 |
+
| | | /-ABarppxaaa
|
| 117 |
+
| \ABaxxABarpx /ABarppxaa
|
| 118 |
+
| | | \-ABarppxaap
|
| 119 |
+
| | /ABarppxa
|
| 120 |
+
| | | | /ABarppxapp-ABarppxappx
|
| 121 |
+
| | | \ABarppxap
|
| 122 |
+
| \ABarppx \-ABarppxapa
|
| 123 |
+
| |
|
| 124 |
+
| | /ABarppxpa-ABarppxpax
|
| 125 |
+
| \ABarppxp
|
| 126 |
+
| | /-ABarppxppa
|
| 127 |
+
| \ABarppxpp
|
| 128 |
+
| \-ABarppxppp
|
| 129 |
+
|
|
| 130 |
+
| /-MSpaaaaa
|
| 131 |
+
| /MSpaaaa
|
| 132 |
+
| | \-MSpaaaap
|
| 133 |
+
| /MSxaaa
|
| 134 |
+
| | | /-MSpaaapa
|
| 135 |
+
-P0 | \MSpaaap
|
| 136 |
+
| /MSxaa \-MSpaaapp
|
| 137 |
+
| | |
|
| 138 |
+
| | | /MSxaapap-MSaaapapp
|
| 139 |
+
| | | /MSxaapa
|
| 140 |
+
| | \MSxaap \-MSpaapaa
|
| 141 |
+
| | |
|
| 142 |
+
| | \MSaaapp-MSaaappp
|
| 143 |
+
| /MSxa
|
| 144 |
+
| | | /-MSxapaaa
|
| 145 |
+
| | | /MSxapaa
|
| 146 |
+
| | | | \MSxapaap-MSxapaapa
|
| 147 |
+
| | | /MSxapa
|
| 148 |
+
| | | | | /MSxapapa-MSxapapaa
|
| 149 |
+
| | | | \MSxapap
|
| 150 |
+
| | \MSxap \-MSxapapp
|
| 151 |
+
| | |
|
| 152 |
+
| | | /-MSaappa
|
| 153 |
+
| | \MSxapp
|
| 154 |
+
| /MSx | /MSxapppa-MSxapppax
|
| 155 |
+
| | | \MSxappp
|
| 156 |
+
| | | \MSxapppp-MSxappppx
|
| 157 |
+
| | |
|
| 158 |
+
| | | /MSxpaaa-MSxpaaaa
|
| 159 |
+
| | | /MSxpaa
|
| 160 |
+
| | | | \MSxpaap-MSxpaapp
|
| 161 |
+
| | | /MSxpa
|
| 162 |
+
| | | | | /MSxpapa-MSxpapaa
|
| 163 |
+
| | | | \MSxpap
|
| 164 |
+
| | | | \MSxpapp-MSxpappp
|
| 165 |
+
| | | |
|
| 166 |
+
| /EMS \MSxp /-MSxppaaa
|
| 167 |
+
| | | | /MSxppaa
|
| 168 |
+
| | | | /MSxppa \-MSxppaap
|
| 169 |
+
| | | | | |
|
| 170 |
+
| | | | | \-MSxppap
|
| 171 |
+
| | | \MSxpp
|
| 172 |
+
| | | | /-MSxpppaa
|
| 173 |
+
| | | | /MSxpppa
|
| 174 |
+
| | | \MSxppp \-MSxpppap
|
| 175 |
+
| | | |
|
| 176 |
+
| | | \MSxpppp-MSxppppx
|
| 177 |
+
| | |
|
| 178 |
+
| | | /-Eaxaa
|
| 179 |
+
| | \ExxExxx
|
| 180 |
+
| | \-Epxpp
|
| 181 |
+
\P1
|
| 182 |
+
| /CxaaCxaax-Cxaaxp
|
| 183 |
+
| |
|
| 184 |
+
| /Cxa /-Cpappv
|
| 185 |
+
| | | /Cxapp
|
| 186 |
+
| | \Cxap \-Cxappd
|
| 187 |
+
| | |
|
| 188 |
+
| | \Cpapa-Cpapax
|
| 189 |
+
| /Cx
|
| 190 |
+
| | | /CxpaaCxpaaa-Cxpaaax
|
| 191 |
+
| | | /Cxpa
|
| 192 |
+
| | | | | /Cxpapa-Cxpapax
|
| 193 |
+
| | | | \Cxpap
|
| 194 |
+
| | \Cxp \Cxpapp-Cxpappx
|
| 195 |
+
| | |
|
| 196 |
+
\P2 | /CxppaCxppaa-Cxppaax
|
| 197 |
+
| \Cxpp
|
| 198 |
+
| | /Cxpppa-Cxpppax
|
| 199 |
+
| \Cxppp
|
| 200 |
+
| \Cxpppp-Cxppppx
|
| 201 |
+
|
|
| 202 |
+
| /Dxxa-Dxxax
|
| 203 |
+
\Dx/Dxx
|
| 204 |
+
| /Dxppa-Dxppax
|
| 205 |
+
\Dxxp
|
| 206 |
+
\Dxppp-Dxpppx
|
celegans_small/P0/celegans_p0_quartet_distance_map.pkl
ADDED
|
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|
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| 1 |
+
version https://git-lfs.github.com/spec/v1
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|
| 3 |
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size 761287774
|
celegans_small/P0/exprs_df_cache.pkl
ADDED
|
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|
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|
|
|
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|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
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|
| 3 |
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size 1759635802
|
celegans_small/P0/exprs_df_cache.pkl.bk
ADDED
|
@@ -0,0 +1,3 @@
|
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|
|
|
|
|
|
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|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
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|
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size 41264666260
|
celegans_small/P0/tree_df-P0.csv
ADDED
|
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|
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|
|
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|
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|
|
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|
|
|
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|
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|
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|
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|
|
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|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
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|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
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|
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|
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|
|
|
|
|
|
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|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
Lineage,Parent,n_cells
|
| 2 |
+
P0,,0
|
| 3 |
+
AB,P0,0
|
| 4 |
+
P1,P0,0
|
| 5 |
+
ABPx,AB,0
|
| 6 |
+
EMS,P1,0
|
| 7 |
+
P2,P1,0
|
| 8 |
+
ABaxx,AB,27
|
| 9 |
+
ABarpx,ABaxx,15
|
| 10 |
+
ABarpaa,ABarpx,8
|
| 11 |
+
ABarppx,ABarpx,37
|
| 12 |
+
ABarpaaa,ABarpaa,42
|
| 13 |
+
ABarpaap,ABarpaa,10
|
| 14 |
+
ABarppxa,ABarppx,4
|
| 15 |
+
ABarppxp,ABarppx,22
|
| 16 |
+
ABarpaaaa,ABarpaaa,41
|
| 17 |
+
ABarpaaap,ABarpaaa,60
|
| 18 |
+
ABarpaapx,ABarpaap,43
|
| 19 |
+
ABarppxaa,ABarppxa,47
|
| 20 |
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ABarppxap,ABarppxa,44
|
| 21 |
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ABarppxpa,ABarppxp,32
|
| 22 |
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ABarppxpp,ABarppxp,71
|
| 23 |
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ABarpaaaaa,ABarpaaaa,56
|
| 24 |
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ABarpaapaa,ABarpaapx,92
|
| 25 |
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ABarppxaaa,ABarppxaa,53
|
| 26 |
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ABarppxaap,ABarppxaa,88
|
| 27 |
+
ABarppxapp,ABarppxap,172
|
| 28 |
+
ABarppxapa,ABarppxap,98
|
| 29 |
+
ABarppxpax,ABarppxpa,206
|
| 30 |
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ABarppxppa,ABarppxpp,71
|
| 31 |
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ABarppxppp,ABarppxpp,62
|
| 32 |
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ABarppxappx,ABarppxapp,34
|
| 33 |
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ABpxp,ABPx,12
|
| 34 |
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ABpxpa,ABpxp,13
|
| 35 |
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ABpxpp,ABpxp,9
|
| 36 |
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ABpxpaa,ABpxpa,10
|
| 37 |
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ABpxpap,ABpxpa,9
|
| 38 |
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ABpxppa,ABpxpp,17
|
| 39 |
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ABpxppp,ABpxpp,24
|
| 40 |
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ABpxpaaa,ABpxpaa,42
|
| 41 |
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ABpxpaap,ABpxpaa,37
|
| 42 |
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ABplpapp,ABpxpap,17
|
| 43 |
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ABprpapp,ABpxpap,15
|
| 44 |
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ABpxppaa,ABpxppa,51
|
| 45 |
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ABpxppap,ABpxppa,28
|
| 46 |
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ABpxpppa,ABpxppp,67
|
| 47 |
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ABpxpppp,ABpxppp,31
|
| 48 |
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ABpxpaaaa,ABpxpaaa,62
|
| 49 |
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ABpxpaaap,ABpxpaaa,50
|
| 50 |
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ABpxpaapa,ABpxpaap,72
|
| 51 |
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ABpxpaapp,ABpxpaap,45
|
| 52 |
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ABplpappa,ABplpapp,29
|
| 53 |
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ABplpappp,ABplpapp,51
|
| 54 |
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ABprpappa,ABprpapp,55
|
| 55 |
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ABprpappp,ABprpapp,42
|
| 56 |
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ABpxppaaa,ABpxppaa,118
|
| 57 |
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ABpxppaap,ABpxppaa,67
|
| 58 |
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ABpxppapa,ABpxppap,104
|
| 59 |
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ABpxppapp,ABpxppap,70
|
| 60 |
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ABpxpppaa,ABpxpppa,47
|
| 61 |
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ABpxpppap,ABpxpppa,88
|
| 62 |
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ABpxppppa,ABpxpppp,65
|
| 63 |
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ABpxppppp,ABpxpppp,76
|
| 64 |
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ABpxpaaaaa,ABpxpaaaa,195
|
| 65 |
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ABpxpaaaap,ABpxpaaaa,176
|
| 66 |
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ABpxpaaapa,ABpxpaaap,115
|
| 67 |
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ABpxpaaapp,ABpxpaaap,207
|
| 68 |
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ABpxpaapaa,ABpxpaapa,212
|
| 69 |
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ABpxpaapap,ABpxpaapa,126
|
| 70 |
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ABpxpaappa,ABpxpaapp,115
|
| 71 |
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ABpxpaappp,ABpxpaapp,184
|
| 72 |
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ABplpappaa,ABplpappa,42
|
| 73 |
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ABplpapppa,ABplpappp,45
|
| 74 |
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ABplpapppp,ABplpappp,39
|
| 75 |
+
ABprpappaa,ABprpappa,51
|
| 76 |
+
ABprpappap,ABprpappa,57
|
| 77 |
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ABprpapppa,ABprpappp,60
|
| 78 |
+
ABprpapppp,ABprpappp,37
|
| 79 |
+
ABpxppaaaa,ABpxppaaa,134
|
| 80 |
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ABpxppaapa,ABpxppaap,133
|
| 81 |
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ABpxppaapp,ABpxppaap,156
|
| 82 |
+
ABpxppapaa,ABpxppapa,234
|
| 83 |
+
ABpxppapap,ABpxppapa,145
|
| 84 |
+
ABpxppappa,ABpxppapp,173
|
| 85 |
+
ABpxppappp,ABpxppapp,219
|
| 86 |
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ABpxpppaaa,ABpxpppaa,175
|
| 87 |
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ABpxpppaap,ABpxpppaa,135
|
| 88 |
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ABpxpppapa,ABpxpppap,95
|
| 89 |
+
ABpxppppaa,ABpxppppa,169
|
| 90 |
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ABpxppppap,ABpxppppa,148
|
| 91 |
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ABpxpppppa,ABpxppppp,102
|
| 92 |
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ABpxpppppp,ABpxppppp,86
|
| 93 |
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ABpxpaaaaap,ABpxpaaaaa,180
|
| 94 |
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ABpxpaaaapa,ABpxpaaaap,65
|
| 95 |
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ABpxpaapaap,ABpxpaapaa,114
|
| 96 |
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ABpxpaapaaa,ABpxpaapaa,124
|
| 97 |
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ABpxpaapapa,ABpxpaapap,111
|
| 98 |
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ABpxpaappaa,ABpxpaappa,212
|
| 99 |
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ABpxpaappap,ABpxpaappa,32
|
| 100 |
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ABpxpaapppa,ABpxpaappp,59
|
| 101 |
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ABplpappaap,ABplpappaa,103
|
| 102 |
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ABplpapppax,ABplpapppa,39
|
| 103 |
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ABplpappppa,ABplpapppp,16
|
| 104 |
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ABprpappaap,ABprpappaa,69
|
| 105 |
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ABprpappaaa,ABprpappaa,30
|
| 106 |
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ABprpappapa,ABprpappap,43
|
| 107 |
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ABprpapppap,ABprpapppa,77
|
| 108 |
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ABpxppaaaap,ABpxppaaaa,222
|
| 109 |
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ABpxppaapap,ABpxppaapa,100
|
| 110 |
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ABprpppaaaa,ABpxpppaaa,43
|
| 111 |
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ABpxpppaapa,ABpxpppaap,138
|
| 112 |
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ABpxppppaaa,ABpxppppaa,55
|
| 113 |
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ABplppppapx,ABpxppppap,46
|
| 114 |
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ABpxppaaaapp,ABpxppaaaap,36
|
| 115 |
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ABprppppap,ABpxppppap,0
|
| 116 |
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ABprppppapa,ABprppppap,35
|
| 117 |
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ABprppppapp,ABprppppap,48
|
| 118 |
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ABpxax,ABPx,17
|
| 119 |
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ABpxaap,ABpxax,27
|
| 120 |
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ABpxapa,ABpxax,7
|
| 121 |
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ABpxaapa,ABpxaap,53
|
| 122 |
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ABpxaapp,ABpxaap,28
|
| 123 |
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ABpxapaa,ABpxapa,53
|
| 124 |
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ABpxapap,ABpxapa,43
|
| 125 |
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ABpxaapaa,ABpxaapa,98
|
| 126 |
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ABpxaapap,ABpxaapa,75
|
| 127 |
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ABpxaappa,ABpxaapp,56
|
| 128 |
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ABpxaappp,ABpxaapp,38
|
| 129 |
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ABpxapaaa,ABpxapaa,86
|
| 130 |
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ABpxapaap,ABpxapaa,46
|
| 131 |
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ABpxapapa,ABpxapap,64
|
| 132 |
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ABpxapapp,ABpxapap,25
|
| 133 |
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ABpxaapaaa,ABpxaapaa,184
|
| 134 |
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ABpxaapaap,ABpxaapaa,169
|
| 135 |
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ABpxaapapa,ABpxaapap,160
|
| 136 |
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ABpxaapapp,ABpxaapap,111
|
| 137 |
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ABpxaappaa,ABpxaappa,132
|
| 138 |
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ABpxaappap,ABpxaappa,154
|
| 139 |
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ABpxaapppa,ABpxaappp,185
|
| 140 |
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ABpxaapppp,ABpxaappp,202
|
| 141 |
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ABpxapaaaa,ABpxapaaa,123
|
| 142 |
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ABpxapaaap,ABpxapaaa,121
|
| 143 |
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ABpxapaapa,ABpxapaap,67
|
| 144 |
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ABpxapaapp,ABpxapaap,86
|
| 145 |
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ABpxapapaa,ABpxapapa,127
|
| 146 |
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ABpxapapap,ABpxapapa,73
|
| 147 |
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ABpxapappp,ABpxapapp,269
|
| 148 |
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ABpxapappa,ABpxapapp,168
|
| 149 |
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ABpxaapaaaa,ABpxaapaaa,94
|
| 150 |
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ABpxaapaapp,ABpxaapaap,216
|
| 151 |
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ABpxaapaapa,ABpxaapaap,79
|
| 152 |
+
ABpxaapapap,ABpxaapapa,51
|
| 153 |
+
ABpxaapapaa,ABpxaapapa,139
|
| 154 |
+
ABpxaapappa,ABpxaapapp,65
|
| 155 |
+
ABpxaapappp,ABpxaapapp,186
|
| 156 |
+
ABpxapaaaap,ABpxapaaaa,109
|
| 157 |
+
ABpxapaaapa,ABpxapaaap,237
|
| 158 |
+
ABpxapapppp,ABpxapappp,143
|
| 159 |
+
ABpxaapapppa,ABpxaapappp,87
|
| 160 |
+
ABpxapaaaapa,ABpxapaaaap,41
|
| 161 |
+
ABpxapaaapav,ABpxapaaapa,21
|
| 162 |
+
ABpxapaaapad,ABpxapaaapa,18
|
| 163 |
+
MSx,EMS,6
|
| 164 |
+
MSxa,MSx,6
|
| 165 |
+
MSxp,MSx,13
|
| 166 |
+
MSxaa,MSxa,17
|
| 167 |
+
MSxap,MSxa,17
|
| 168 |
+
MSxpa,MSxp,17
|
| 169 |
+
MSxpp,MSxp,18
|
| 170 |
+
MSxaaa,MSxaa,29
|
| 171 |
+
MSxaap,MSxaa,44
|
| 172 |
+
MSxapa,MSxap,27
|
| 173 |
+
MSxapp,MSxap,42
|
| 174 |
+
MSxpaa,MSxpa,57
|
| 175 |
+
MSxpap,MSxpa,33
|
| 176 |
+
MSxppa,MSxpp,63
|
| 177 |
+
MSxppp,MSxpp,24
|
| 178 |
+
MSpaaaa,MSxaaa,39
|
| 179 |
+
MSpaaap,MSxaaa,24
|
| 180 |
+
MSxaapa,MSxaap,82
|
| 181 |
+
MSaaapp,MSxaap,84
|
| 182 |
+
MSxapaa,MSxapa,126
|
| 183 |
+
MSxapap,MSxapa,103
|
| 184 |
+
MSaappa,MSxapp,111
|
| 185 |
+
MSxappp,MSxapp,279
|
| 186 |
+
MSxpaaa,MSxpaa,154
|
| 187 |
+
MSxpaap,MSxpaa,0
|
| 188 |
+
MSxpapa,MSxpap,160
|
| 189 |
+
MSxpapp,MSxpap,199
|
| 190 |
+
MSxppaa,MSxppa,201
|
| 191 |
+
MSxppap,MSxppa,215
|
| 192 |
+
MSxpppa,MSxppp,142
|
| 193 |
+
MSxpppp,MSxppp,267
|
| 194 |
+
MSpaaaaa,MSpaaaa,93
|
| 195 |
+
MSpaaaap,MSpaaaa,67
|
| 196 |
+
MSpaaapa,MSpaaap,50
|
| 197 |
+
MSpaaapp,MSpaaap,58
|
| 198 |
+
MSxaapap,MSxaapa,56
|
| 199 |
+
MSpaapaa,MSxaapa,82
|
| 200 |
+
MSaaappp,MSaaapp,31
|
| 201 |
+
MSxapaaa,MSxapaa,123
|
| 202 |
+
MSxapaap,MSxapaa,131
|
| 203 |
+
MSxapapa,MSxapap,119
|
| 204 |
+
MSxapapp,MSxapap,117
|
| 205 |
+
MSxapppa,MSxappp,111
|
| 206 |
+
MSxapppp,MSxappp,146
|
| 207 |
+
MSxpaaaa,MSxpaaa,273
|
| 208 |
+
MSxpaapp,MSxpaap,0
|
| 209 |
+
MSxpapaa,MSxpapa,616
|
| 210 |
+
MSxpappp,MSxpapp,110
|
| 211 |
+
MSxppaaa,MSxppaa,122
|
| 212 |
+
MSxppaap,MSxppaa,315
|
| 213 |
+
MSxpppaa,MSxpppa,94
|
| 214 |
+
MSxpppap,MSxpppa,98
|
| 215 |
+
MSxppppx,MSxpppp,85
|
| 216 |
+
MSaaapapp,MSxaapap,29
|
| 217 |
+
MSxapaapa,MSxapaap,74
|
| 218 |
+
MSxapapaa,MSxapapa,71
|
| 219 |
+
MSxapppax,MSxapppa,117
|
| 220 |
+
MSxappppx,MSxapppp,133
|
| 221 |
+
Exx,EMS,12
|
| 222 |
+
Exxx,Exx,111
|
| 223 |
+
Eaxaa,Exxx,85
|
| 224 |
+
Epxpp,Exxx,53
|
| 225 |
+
Cx,P2,14
|
| 226 |
+
Cxa,Cx,6
|
| 227 |
+
Cxp,Cx,16
|
| 228 |
+
Cxaa,Cxa,8
|
| 229 |
+
Cxap,Cxa,13
|
| 230 |
+
Cxpa,Cxp,37
|
| 231 |
+
Cxpp,Cxp,47
|
| 232 |
+
Cxaax,Cxaa,42
|
| 233 |
+
Cxapp,Cxap,75
|
| 234 |
+
Cpapa,Cxap,40
|
| 235 |
+
Cxpaa,Cxpa,126
|
| 236 |
+
Cxpap,Cxpa,153
|
| 237 |
+
Cxppa,Cxpp,109
|
| 238 |
+
Cxppp,Cxpp,125
|
| 239 |
+
Cxaaxp,Cxaax,0
|
| 240 |
+
Cpappv,Cxapp,58
|
| 241 |
+
Cxappd,Cxapp,72
|
| 242 |
+
Cpapax,Cpapa,157
|
| 243 |
+
Cxpaaa,Cxpaa,105
|
| 244 |
+
Cxpapa,Cxpap,108
|
| 245 |
+
Cxpapp,Cxpap,101
|
| 246 |
+
Cxppaa,Cxppa,98
|
| 247 |
+
Cxpppa,Cxppp,139
|
| 248 |
+
Cxpppp,Cxppp,133
|
| 249 |
+
Cxpaaax,Cxpaaa,115
|
| 250 |
+
Cxpapax,Cxpapa,92
|
| 251 |
+
Cxpappx,Cxpapp,93
|
| 252 |
+
Cxppaax,Cxppaa,116
|
| 253 |
+
Cxpppax,Cxpppa,95
|
| 254 |
+
Cxppppx,Cxpppp,153
|
| 255 |
+
Dx,P2,28
|
| 256 |
+
Dxx,Dx,0
|
| 257 |
+
Dxxa,Dxx,227
|
| 258 |
+
Dxxp,Dxx,0
|
| 259 |
+
Dxxax,Dxxa,134
|
| 260 |
+
Dxppa,Dxxp,90
|
| 261 |
+
Dxppp,Dxxp,111
|
| 262 |
+
Dxppax,Dxppa,123
|
| 263 |
+
Dxpppx,Dxppp,90
|
celegans_small/raw/ABpxpp-tree.csv
ADDED
|
@@ -0,0 +1,64 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
Lineage,Parent,level,n_cells
|
| 2 |
+
ABpxpp,NA,1,
|
| 3 |
+
ABpxppa,ABpxpp,2,
|
| 4 |
+
ABpxppp,ABpxpp,2,
|
| 5 |
+
ABpxppaa,ABpxppa,3,
|
| 6 |
+
ABpxppap,ABpxppa,3,
|
| 7 |
+
ABpxpppa,ABpxppp,3,
|
| 8 |
+
ABpxpppp,ABpxppp,3,
|
| 9 |
+
ABpxppaaa,ABpxppaa,4,
|
| 10 |
+
ABpxppaap,ABpxppaa,4,
|
| 11 |
+
ABpxppapa,ABpxppap,4,
|
| 12 |
+
ABpxppapp,ABpxppap,4,
|
| 13 |
+
ABpxpppaa,ABpxpppa,4,
|
| 14 |
+
ABpxpppap,ABpxpppa,4,
|
| 15 |
+
ABpxppppa,ABpxpppp,4,
|
| 16 |
+
ABpxppppp,ABpxpppp,4,
|
| 17 |
+
ABpxppaaaa,ABpxppaaa,5,
|
| 18 |
+
ABpxppaaap,ABpxppaaa,5,
|
| 19 |
+
ABpxppaapa,ABpxppaap,5,
|
| 20 |
+
ABpxppaapp,ABpxppaap,5,
|
| 21 |
+
ABpxppapaa,ABpxppapa,5,
|
| 22 |
+
ABpxppapap,ABpxppapa,5,
|
| 23 |
+
ABpxppappa,ABpxppapp,5,
|
| 24 |
+
ABpxppappp,ABpxppapp,5,
|
| 25 |
+
ABpxpppaaa,ABpxpppaa,5,
|
| 26 |
+
ABpxpppaap,ABpxpppaa,5,
|
| 27 |
+
ABpxpppapa,ABpxpppap,5,
|
| 28 |
+
ABpxpppapp,ABpxpppap,5,
|
| 29 |
+
ABpxppppaa,ABpxppppa,5,
|
| 30 |
+
ABpxppppap,ABpxppppa,5,
|
| 31 |
+
ABpxpppppa,ABpxppppp,5,
|
| 32 |
+
ABpxpppppp,ABpxppppp,5,
|
| 33 |
+
ABpxppaaaaa,ABpxppaaaa,6,
|
| 34 |
+
ABpxppaaaap,ABpxppaaaa,6,
|
| 35 |
+
ABpxppaaapa,ABpxppaaap,6,
|
| 36 |
+
ABpxppaaapp,ABpxppaaap,6,
|
| 37 |
+
ABpxppaapaa,ABpxppaapa,6,
|
| 38 |
+
ABpxppaapap,ABpxppaapa,6,
|
| 39 |
+
ABpxppaappa,ABpxppaapp,6,
|
| 40 |
+
ABpxppaappp,ABpxppaapp,6,
|
| 41 |
+
ABpxppapaaa,ABpxppapaa,6,
|
| 42 |
+
ABpxppapaap,ABpxppapaa,6,
|
| 43 |
+
ABpxppapapa,ABpxppapap,6,
|
| 44 |
+
ABpxppapapp,ABpxppapap,6,
|
| 45 |
+
ABpxppappaa,ABpxppappa,6,
|
| 46 |
+
ABpxppappap,ABpxppappa,6,
|
| 47 |
+
ABpxppapppa,ABpxppappp,6,
|
| 48 |
+
ABpxppapppp,ABpxppappp,6,
|
| 49 |
+
ABpxpppaaaa,ABpxpppaaa,6,
|
| 50 |
+
ABpxpppaaap,ABpxpppaaa,6,
|
| 51 |
+
ABpxpppaapa,ABpxpppaap,6,
|
| 52 |
+
ABpxpppaapp,ABpxpppaap,6,
|
| 53 |
+
ABpxpppapaa,ABpxpppapa,6,
|
| 54 |
+
ABpxpppapap,ABpxpppapa,6,
|
| 55 |
+
ABpxpppappa,ABpxpppapp,6,
|
| 56 |
+
ABpxpppappp,ABpxpppapp,6,
|
| 57 |
+
ABpxppppaaa,ABpxppppaa,6,
|
| 58 |
+
ABpxppppaap,ABpxppppaa,6,
|
| 59 |
+
ABpxppppapa,ABpxppppap,6,
|
| 60 |
+
ABpxppppapp,ABpxppppap,6,
|
| 61 |
+
ABpxpppppaa,ABpxpppppa,6,
|
| 62 |
+
ABpxpppppap,ABpxpppppa,6,
|
| 63 |
+
ABpxppppppa,ABpxpppppp,6,
|
| 64 |
+
ABpxppppppp,ABpxpppppp,6,
|
celegans_small/raw/CellTable.csv
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
celegans_small/raw/cell_barcodes.csv
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
celegans_small/raw/download.sh
ADDED
|
@@ -0,0 +1,2 @@
|
|
|
|
|
|
|
|
|
|
| 1 |
+
scp kuangda@kim-37:/kimdata/livinlrg/scAnalysis/Export/For_Da/CellTable.rds data/real_data/CellTable.rds
|
| 2 |
+
scp kuangda@kim-37:/kimdata/livinlrg/scAnalysis/Export/For_Da/ele_cds_filt.rds data/real_data/ele_cds_filt.rds
|
celegans_small/raw/exprs.mm
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:16da13113c4bff745d15ab6ae8daf3dbda22887f3c3ebaede26c665dafcf94d2
|
| 3 |
+
size 3063505147
|
celegans_small/raw/exprs_normalized.mm
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:a67f150dd1b5168ec94fc9be7098500c00982590ce05d631af29f31694930c17
|
| 3 |
+
size 6659473605
|
celegans_small/raw/genes.csv
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
celegans_small/raw/metadata.csv
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:2535a6b694e069eeb231fd93906ff248839f7553e9717c9c22e05deb1e8de116
|
| 3 |
+
size 45202541
|
celegans_small/raw/tree_df/ABalapx-ncells.txt
ADDED
|
@@ -0,0 +1,12 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
|
| 2 |
+
/-ABalapaa, 23
|
| 3 |
+
|
|
| 4 |
+
| /-ABalapapa, 20
|
| 5 |
+
| |
|
| 6 |
+
| | /-ABalapxppa, 106
|
| 7 |
+
-ABalapxABalapxp, 44ABalapxpp, 43
|
| 8 |
+
| | \ABalapxppp, 103-ABalapxpppa, 41
|
| 9 |
+
| |
|
| 10 |
+
| \ABalapppa, 27ABalapppaa, 108-ABalapppaaa, 36
|
| 11 |
+
|
|
| 12 |
+
\ABalappa, 13ABalappaa, 29ABalappaap, 110-ABalappaapa, 35
|
celegans_small/raw/tree_df/ABalapx.txt
ADDED
|
@@ -0,0 +1,12 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
|
| 2 |
+
/-ABalapaa
|
| 3 |
+
|
|
| 4 |
+
| /-ABalapapa
|
| 5 |
+
| |
|
| 6 |
+
| | /-ABalapxppa
|
| 7 |
+
-ABalapxABalapxpABalapxpp
|
| 8 |
+
| | \ABalapxppp-ABalapxpppa
|
| 9 |
+
| |
|
| 10 |
+
| \ABalapppaABalapppaa-ABalapppaaa
|
| 11 |
+
|
|
| 12 |
+
\ABalappaABalappaaABalappaap-ABalappaapa
|
celegans_small/raw/tree_df/ABalpax-ncells.txt
ADDED
|
@@ -0,0 +1,2 @@
|
|
|
|
|
|
|
|
|
|
| 1 |
+
|
| 2 |
+
--ABalpax
|
celegans_small/raw/tree_df/ABalpax.txt
ADDED
|
@@ -0,0 +1,2 @@
|
|
|
|
|
|
|
|
|
|
| 1 |
+
|
| 2 |
+
--ABalpax
|
celegans_small/raw/tree_df/ABalppa-ncells.txt
ADDED
|
@@ -0,0 +1,2 @@
|
|
|
|
|
|
|
|
|
|
| 1 |
+
|
| 2 |
+
-ABalppa-ABalppaa, 27
|
celegans_small/raw/tree_df/ABalppa.txt
ADDED
|
@@ -0,0 +1,2 @@
|
|
|
|
|
|
|
|
|
|
| 1 |
+
|
| 2 |
+
-ABalppa-ABalppaa
|
celegans_small/raw/tree_df/ABaraax-ncells.txt
ADDED
|
@@ -0,0 +1,14 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
|
| 2 |
+
/ABaraaaaa, 39-ABaraaaaax, 109
|
| 3 |
+
/ABaraaaa, 41
|
| 4 |
+
| \ABaraaaap, 27-ABaraaaapa, 57
|
| 5 |
+
|
|
| 6 |
+
-ABaraax /-ABaraapaaa, 42
|
| 7 |
+
| |
|
| 8 |
+
| /ABaraapxa, 49-ABaraapxap, 86
|
| 9 |
+
| | |
|
| 10 |
+
\ABaraapx, 24 \-ABaraappaa, 46
|
| 11 |
+
|
|
| 12 |
+
| /ABaraapxpa, 114-ABaraapxpaa, 70
|
| 13 |
+
\ABaraapxp, 26
|
| 14 |
+
\-ABaraapxpp, 92
|
celegans_small/raw/tree_df/ABaraax.txt
ADDED
|
@@ -0,0 +1,14 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
|
| 2 |
+
/ABaraaaaa-ABaraaaaax
|
| 3 |
+
/ABaraaaa
|
| 4 |
+
| \ABaraaaap-ABaraaaapa
|
| 5 |
+
|
|
| 6 |
+
-ABaraax /-ABaraapaaa
|
| 7 |
+
| |
|
| 8 |
+
| /ABaraapxa-ABaraapxap
|
| 9 |
+
| | |
|
| 10 |
+
\ABaraapx \-ABaraappaa
|
| 11 |
+
|
|
| 12 |
+
| /ABaraapxpa-ABaraapxpaa
|
| 13 |
+
\ABaraapxp
|
| 14 |
+
\-ABaraapxpp
|
celegans_small/raw/tree_df/ABarapa-ncells.txt
ADDED
|
@@ -0,0 +1,2 @@
|
|
|
|
|
|
|
|
|
|
| 1 |
+
|
| 2 |
+
--ABarapa
|
celegans_small/raw/tree_df/ABarapa.txt
ADDED
|
@@ -0,0 +1,2 @@
|
|
|
|
|
|
|
|
|
|
| 1 |
+
|
| 2 |
+
--ABarapa
|
celegans_small/raw/tree_df/ABaxx-ncells.txt
ADDED
|
@@ -0,0 +1,22 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
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|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
|
| 2 |
+
/ABarpaaaa, 41-ABarpaaaaa, 56
|
| 3 |
+
/ABarpaaa, 42
|
| 4 |
+
/ABarpaa, 8 \-ABarpaaap, 60
|
| 5 |
+
| |
|
| 6 |
+
| \ABarpaap, 10ABarpaapx, 43-ABarpaapaa, 92
|
| 7 |
+
|
|
| 8 |
+
|--ABarpax, 0
|
| 9 |
+
|
|
| 10 |
+
-ABaxxABarpx, 15 /-ABarppxaaa, 53
|
| 11 |
+
| /ABarppxaa, 47
|
| 12 |
+
| | \-ABarppxaap, 88
|
| 13 |
+
| /ABarppxa, 4
|
| 14 |
+
| | | /ABarppxapp, 172-ABarppxappx, 34
|
| 15 |
+
| | \ABarppxap, 44
|
| 16 |
+
\ABarppx, 37 \-ABarppxapa, 98
|
| 17 |
+
|
|
| 18 |
+
| /ABarppxpa, 32-ABarppxpax, 206
|
| 19 |
+
\ABarppxp, 22
|
| 20 |
+
| /-ABarppxppa, 71
|
| 21 |
+
\ABarppxpp, 71
|
| 22 |
+
\-ABarppxppp, 62
|
celegans_small/raw/tree_df/ABaxx.txt
ADDED
|
@@ -0,0 +1,22 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
|
| 2 |
+
/ABarpaaaa-ABarpaaaaa
|
| 3 |
+
/ABarpaaa
|
| 4 |
+
/ABarpaa \-ABarpaaap
|
| 5 |
+
| |
|
| 6 |
+
| \ABarpaapABarpaapx-ABarpaapaa
|
| 7 |
+
|
|
| 8 |
+
|--ABarpax
|
| 9 |
+
|
|
| 10 |
+
-ABaxxABarpx /-ABarppxaaa
|
| 11 |
+
| /ABarppxaa
|
| 12 |
+
| | \-ABarppxaap
|
| 13 |
+
| /ABarppxa
|
| 14 |
+
| | | /ABarppxapp-ABarppxappx
|
| 15 |
+
| | \ABarppxap
|
| 16 |
+
\ABarppx \-ABarppxapa
|
| 17 |
+
|
|
| 18 |
+
| /ABarppxpa-ABarppxpax
|
| 19 |
+
\ABarppxp
|
| 20 |
+
| /-ABarppxppa
|
| 21 |
+
\ABarppxpp
|
| 22 |
+
\-ABarppxppp
|
celegans_small/raw/tree_df/ABpxax-ncells.txt
ADDED
|
@@ -0,0 +1,54 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
|
| 2 |
+
/ABpxaapaaa, 184-ABpxaapaaaa, 94
|
| 3 |
+
/ABpxaapaa, 98
|
| 4 |
+
| | /-ABpxaapaapp, 216
|
| 5 |
+
| \ABpxaapaap, 169
|
| 6 |
+
| \-ABpxaapaapa, 79
|
| 7 |
+
/ABpxaapa, 53
|
| 8 |
+
| | /-ABpxaapapap, 51
|
| 9 |
+
| | /ABpxaapapa, 160
|
| 10 |
+
| | | \-ABpxaapapaa, 139
|
| 11 |
+
| \ABpxaapap, 75
|
| 12 |
+
| | /-ABpxaapappa, 65
|
| 13 |
+
/ABpxaap, 27 \ABpxaapapp, 111
|
| 14 |
+
| | \ABpxaapappp, 186-ABpxaapapppa, 87
|
| 15 |
+
| |
|
| 16 |
+
| | /-ABpxaappaa, 132
|
| 17 |
+
| | /ABpxaappa, 56
|
| 18 |
+
| | | \-ABpxaappap, 154
|
| 19 |
+
| \ABpxaapp, 28
|
| 20 |
+
| | /-ABpxaapppa, 185
|
| 21 |
+
| \ABpxaappp, 38
|
| 22 |
+
| \-ABpxaapppp, 202
|
| 23 |
+
|
|
| 24 |
+
| /ABpxapaaaa, 123ABpxapaaaap, 109-ABpxapaaaapa, 41
|
| 25 |
+
| /ABpxapaaa, 86
|
| 26 |
+
| | | /-ABpxapaaapav, 21
|
| 27 |
+
| | \ABpxapaaap, 121ABpxapaaapa, 237
|
| 28 |
+
| /ABpxapaa, 53 \-ABpxapaaapad, 18
|
| 29 |
+
| | |
|
| 30 |
+
-ABpxax | | /-ABpxapaapa, 67
|
| 31 |
+
| | \ABpxapaap, 46
|
| 32 |
+
|-ABpxapa, 7 \-ABpxapaapp, 86
|
| 33 |
+
| |
|
| 34 |
+
| | /-ABpxapapaa, 127
|
| 35 |
+
| | /ABpxapapa, 64
|
| 36 |
+
| | | \-ABpxapapap, 73
|
| 37 |
+
| \ABpxapap, 43
|
| 38 |
+
| | /ABpxapappp, 269-ABpxapapppp, 143
|
| 39 |
+
| \ABpxapapp, 25
|
| 40 |
+
| \-ABpxapappa, 168
|
| 41 |
+
|
|
| 42 |
+
| /ABpxappaa, 44-ABpxappaax, 0
|
| 43 |
+
| /ABpxappa, 40
|
| 44 |
+
| | | /-ABpxappapp, 110
|
| 45 |
+
| | \ABpxappap, 79
|
| 46 |
+
| | \-ABpxappapa, 136
|
| 47 |
+
\ABpxapp, 10
|
| 48 |
+
| /ABpxapppaa, 210-ABpxapppaaa, 29
|
| 49 |
+
| /ABpxapppa, 156
|
| 50 |
+
| | \ABpxapppap, 95ABpxapppapp, 117-ABpxapppappp, 54
|
| 51 |
+
\ABpxappp, 49
|
| 52 |
+
| /-ABpxappppa, 74
|
| 53 |
+
\ABpxapppp, 30
|
| 54 |
+
\-ABpxappppp, 151
|
celegans_small/raw/tree_df/ABpxax.txt
ADDED
|
@@ -0,0 +1,54 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
|
| 2 |
+
/ABpxaapaaa-ABpxaapaaaa
|
| 3 |
+
/ABpxaapaa
|
| 4 |
+
| | /-ABpxaapaapp
|
| 5 |
+
| \ABpxaapaap
|
| 6 |
+
| \-ABpxaapaapa
|
| 7 |
+
/ABpxaapa
|
| 8 |
+
| | /-ABpxaapapap
|
| 9 |
+
| | /ABpxaapapa
|
| 10 |
+
| | | \-ABpxaapapaa
|
| 11 |
+
| \ABpxaapap
|
| 12 |
+
| | /-ABpxaapappa
|
| 13 |
+
/ABpxaap \ABpxaapapp
|
| 14 |
+
| | \ABpxaapappp-ABpxaapapppa
|
| 15 |
+
| |
|
| 16 |
+
| | /-ABpxaappaa
|
| 17 |
+
| | /ABpxaappa
|
| 18 |
+
| | | \-ABpxaappap
|
| 19 |
+
| \ABpxaapp
|
| 20 |
+
| | /-ABpxaapppa
|
| 21 |
+
| \ABpxaappp
|
| 22 |
+
| \-ABpxaapppp
|
| 23 |
+
|
|
| 24 |
+
| /ABpxapaaaaABpxapaaaap-ABpxapaaaapa
|
| 25 |
+
| /ABpxapaaa
|
| 26 |
+
| | | /-ABpxapaaapav
|
| 27 |
+
| | \ABpxapaaapABpxapaaapa
|
| 28 |
+
| /ABpxapaa \-ABpxapaaapad
|
| 29 |
+
| | |
|
| 30 |
+
-ABpxax | | /-ABpxapaapa
|
| 31 |
+
| | \ABpxapaap
|
| 32 |
+
|-ABpxapa \-ABpxapaapp
|
| 33 |
+
| |
|
| 34 |
+
| | /-ABpxapapaa
|
| 35 |
+
| | /ABpxapapa
|
| 36 |
+
| | | \-ABpxapapap
|
| 37 |
+
| \ABpxapap
|
| 38 |
+
| | /ABpxapappp-ABpxapapppp
|
| 39 |
+
| \ABpxapapp
|
| 40 |
+
| \-ABpxapappa
|
| 41 |
+
|
|
| 42 |
+
| /ABpxappaa-ABpxappaax
|
| 43 |
+
| /ABpxappa
|
| 44 |
+
| | | /-ABpxappapp
|
| 45 |
+
| | \ABpxappap
|
| 46 |
+
| | \-ABpxappapa
|
| 47 |
+
\ABpxapp
|
| 48 |
+
| /ABpxapppaa-ABpxapppaaa
|
| 49 |
+
| /ABpxapppa
|
| 50 |
+
| | \ABpxapppapABpxapppapp-ABpxapppappp
|
| 51 |
+
\ABpxappp
|
| 52 |
+
| /-ABpxappppa
|
| 53 |
+
\ABpxapppp
|
| 54 |
+
\-ABpxappppp
|
celegans_small/raw/tree_df/ABpxp-ncells.txt
ADDED
|
@@ -0,0 +1,78 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
|
| 2 |
+
/ABpxpaaaaa, 195-ABpxpaaaaap, 180
|
| 3 |
+
/ABpxpaaaa, 62
|
| 4 |
+
| \ABpxpaaaap, 176-ABpxpaaaapa, 65
|
| 5 |
+
/ABpxpaaa, 42
|
| 6 |
+
| | /-ABpxpaaapa, 115
|
| 7 |
+
| \ABpxpaaap, 50
|
| 8 |
+
| \-ABpxpaaapp, 207
|
| 9 |
+
|
|
| 10 |
+
/ABpxpaa, 10 /-ABpxpaapaap, 114
|
| 11 |
+
| | /ABpxpaapaa, 212
|
| 12 |
+
| | /ABpxpaapa, 72 \-ABpxpaapaaa, 124
|
| 13 |
+
| | | |
|
| 14 |
+
| | | \ABpxpaapap, 126-ABpxpaapapa, 111
|
| 15 |
+
| \ABpxpaap, 37
|
| 16 |
+
| | /-ABpxpaappaa, 212
|
| 17 |
+
| | /ABpxpaappa, 115
|
| 18 |
+
| \ABpxpaapp, 45 \-ABpxpaappap, 32
|
| 19 |
+
| |
|
| 20 |
+
| \ABpxpaappp, 184-ABpxpaapppa, 59
|
| 21 |
+
/ABpxpa, 13
|
| 22 |
+
| | /ABpxpapaaa, 196-ABpxpapaaap, 18
|
| 23 |
+
| | /ABpxpapaa, 87
|
| 24 |
+
| | | \-ABpxpapaap, 152
|
| 25 |
+
| | /ABpxpapa, 30
|
| 26 |
+
| | | | /-ABpxpapapap, 130
|
| 27 |
+
| | | | /ABpxpapapa, 148
|
| 28 |
+
| | | \ABpxpapap, 67 \-ABpxpapapaa, 146
|
| 29 |
+
| | | |
|
| 30 |
+
| | | \-ABpxpapapp, 119
|
| 31 |
+
| | |
|
| 32 |
+
| | | /ABplpappa, 29ABplpappaa, 42-ABplpappaap, 103
|
| 33 |
+
| \ABpxpap, 9ABplpapp, 17
|
| 34 |
+
| | | /ABplpapppa, 45-ABplpapppax, 39
|
| 35 |
+
| | \ABplpappp, 51
|
| 36 |
+
| | \ABplpapppp, 39-ABplpappppa, 16
|
| 37 |
+
| |
|
| 38 |
+
| | /-ABprpappaap, 69
|
| 39 |
+
| | /ABprpappaa, 51
|
| 40 |
+
-ABpxp, 12 | /ABprpappa, 55 \-ABprpappaaa, 30
|
| 41 |
+
| | | |
|
| 42 |
+
| \ABprpapp, 15 \ABprpappap, 57-ABprpappapa, 43
|
| 43 |
+
| |
|
| 44 |
+
| | /ABprpapppa, 60-ABprpapppap, 77
|
| 45 |
+
| \ABprpappp, 42
|
| 46 |
+
| \-ABprpapppp, 37
|
| 47 |
+
|
|
| 48 |
+
| /ABpxppaaa, 118ABpxppaaaa, 134ABpxppaaaap, 222-ABpxppaaaapp, 36
|
| 49 |
+
| /ABpxppaa, 51
|
| 50 |
+
| | | /ABpxppaapa, 133-ABpxppaapap, 100
|
| 51 |
+
| | \ABpxppaap, 67
|
| 52 |
+
| | \-ABpxppaapp, 156
|
| 53 |
+
| /ABpxppa, 17
|
| 54 |
+
| | | /-ABpxppapaa, 234
|
| 55 |
+
| | | /ABpxppapa, 104
|
| 56 |
+
| | | | \-ABpxppapap, 145
|
| 57 |
+
| | \ABpxppap, 28
|
| 58 |
+
| | | /-ABpxppappa, 173
|
| 59 |
+
| | \ABpxppapp, 70
|
| 60 |
+
\ABpxpp, 9 \-ABpxppappp, 219
|
| 61 |
+
|
|
| 62 |
+
| /ABpxpppaaa, 175-ABprpppaaaa, 43
|
| 63 |
+
| /ABpxpppaa, 47
|
| 64 |
+
| /ABpxpppa, 67 \ABpxpppaap, 135-ABpxpppaapa, 138
|
| 65 |
+
| | |
|
| 66 |
+
| | \ABpxpppap, 88-ABpxpppapa, 95
|
| 67 |
+
| |
|
| 68 |
+
\ABpxppp, 24 /ABpxppppaa, 169-ABpxppppaaa, 55
|
| 69 |
+
| |
|
| 70 |
+
| /ABpxppppa, 65 /-ABprppppapa, 35
|
| 71 |
+
| | | |
|
| 72 |
+
| | \ABpxppppap, 148-ABprppppapp, 48
|
| 73 |
+
\ABpxpppp, 31 |
|
| 74 |
+
| \-ABplppppapx, 46
|
| 75 |
+
|
|
| 76 |
+
| /-ABpxpppppa, 102
|
| 77 |
+
\ABpxppppp, 76
|
| 78 |
+
\-ABpxpppppp, 86
|
celegans_small/raw/tree_df/ABpxp.txt
ADDED
|
@@ -0,0 +1,78 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
|
| 2 |
+
/ABpxpaaaaa-ABpxpaaaaap
|
| 3 |
+
/ABpxpaaaa
|
| 4 |
+
| \ABpxpaaaap-ABpxpaaaapa
|
| 5 |
+
/ABpxpaaa
|
| 6 |
+
| | /-ABpxpaaapa
|
| 7 |
+
| \ABpxpaaap
|
| 8 |
+
| \-ABpxpaaapp
|
| 9 |
+
|
|
| 10 |
+
/ABpxpaa /-ABpxpaapaap
|
| 11 |
+
| | /ABpxpaapaa
|
| 12 |
+
| | /ABpxpaapa \-ABpxpaapaaa
|
| 13 |
+
| | | |
|
| 14 |
+
| | | \ABpxpaapap-ABpxpaapapa
|
| 15 |
+
| \ABpxpaap
|
| 16 |
+
| | /-ABpxpaappaa
|
| 17 |
+
| | /ABpxpaappa
|
| 18 |
+
| \ABpxpaapp \-ABpxpaappap
|
| 19 |
+
| |
|
| 20 |
+
| \ABpxpaappp-ABpxpaapppa
|
| 21 |
+
/ABpxpa
|
| 22 |
+
| | /ABpxpapaaa-ABpxpapaaap
|
| 23 |
+
| | /ABpxpapaa
|
| 24 |
+
| | | \-ABpxpapaap
|
| 25 |
+
| | /ABpxpapa
|
| 26 |
+
| | | | /-ABpxpapapap
|
| 27 |
+
| | | | /ABpxpapapa
|
| 28 |
+
| | | \ABpxpapap \-ABpxpapapaa
|
| 29 |
+
| | | |
|
| 30 |
+
| | | \-ABpxpapapp
|
| 31 |
+
| | |
|
| 32 |
+
| | | /ABplpappaABplpappaa-ABplpappaap
|
| 33 |
+
| \ABpxpapABplpapp
|
| 34 |
+
| | | /ABplpapppa-ABplpapppax
|
| 35 |
+
| | \ABplpappp
|
| 36 |
+
| | \ABplpapppp-ABplpappppa
|
| 37 |
+
| |
|
| 38 |
+
| | /-ABprpappaap
|
| 39 |
+
| | /ABprpappaa
|
| 40 |
+
-ABpxp | /ABprpappa \-ABprpappaaa
|
| 41 |
+
| | | |
|
| 42 |
+
| \ABprpapp \ABprpappap-ABprpappapa
|
| 43 |
+
| |
|
| 44 |
+
| | /ABprpapppa-ABprpapppap
|
| 45 |
+
| \ABprpappp
|
| 46 |
+
| \-ABprpapppp
|
| 47 |
+
|
|
| 48 |
+
| /ABpxppaaaABpxppaaaaABpxppaaaap-ABpxppaaaapp
|
| 49 |
+
| /ABpxppaa
|
| 50 |
+
| | | /ABpxppaapa-ABpxppaapap
|
| 51 |
+
| | \ABpxppaap
|
| 52 |
+
| | \-ABpxppaapp
|
| 53 |
+
| /ABpxppa
|
| 54 |
+
| | | /-ABpxppapaa
|
| 55 |
+
| | | /ABpxppapa
|
| 56 |
+
| | | | \-ABpxppapap
|
| 57 |
+
| | \ABpxppap
|
| 58 |
+
| | | /-ABpxppappa
|
| 59 |
+
| | \ABpxppapp
|
| 60 |
+
\ABpxpp \-ABpxppappp
|
| 61 |
+
|
|
| 62 |
+
| /ABpxpppaaa-ABprpppaaaa
|
| 63 |
+
| /ABpxpppaa
|
| 64 |
+
| /ABpxpppa \ABpxpppaap-ABpxpppaapa
|
| 65 |
+
| | |
|
| 66 |
+
| | \ABpxpppap-ABpxpppapa
|
| 67 |
+
| |
|
| 68 |
+
\ABpxppp /ABpxppppaa-ABpxppppaaa
|
| 69 |
+
| |
|
| 70 |
+
| /ABpxppppa /-ABprppppapa
|
| 71 |
+
| | | |
|
| 72 |
+
| | \ABpxppppap-ABprppppapp
|
| 73 |
+
\ABpxpppp |
|
| 74 |
+
| \-ABplppppapx
|
| 75 |
+
|
|
| 76 |
+
| /-ABpxpppppa
|
| 77 |
+
\ABpxppppp
|
| 78 |
+
\-ABpxpppppp
|
celegans_small/raw/tree_df/Cx-ncells.txt
ADDED
|
@@ -0,0 +1,32 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
|
| 2 |
+
/Cxaa, 8Cxaax, 42-Cxaaxp, 0
|
| 3 |
+
|
|
| 4 |
+
| /Caapa, 96-Caapaa, 55
|
| 5 |
+
/Cxa, 6 |
|
| 6 |
+
| | | /-Cpappv, 58
|
| 7 |
+
| | | |
|
| 8 |
+
| \Cxap, 13Cxapp, 75-Cxappd, 72
|
| 9 |
+
| | |
|
| 10 |
+
| | \-Caappv, 14
|
| 11 |
+
| |
|
| 12 |
+
| \Cpapa, 40-Cpapax, 157
|
| 13 |
+
|
|
| 14 |
+
-Cx /Cxpaaa, 105-Cxpaaax, 115
|
| 15 |
+
| /Cxpaa, 126
|
| 16 |
+
| | | /-Cxpaapx, 114
|
| 17 |
+
| | \Cxpxap, 0
|
| 18 |
+
| /Cxpa, 37 \-Cxppapx, 105
|
| 19 |
+
| | |
|
| 20 |
+
| | | /Cxpapa, 108-Cxpapax, 92
|
| 21 |
+
| | \Cxpap, 153
|
| 22 |
+
| | \Cxpapp, 101-Cxpappx, 93
|
| 23 |
+
\Cxp, 16
|
| 24 |
+
| /Cxppaa, 98-Cxppaax, 116
|
| 25 |
+
| /Cxppa, 109
|
| 26 |
+
| | | /-Cxpaapx, 114
|
| 27 |
+
| | \Cxpxap, 0
|
| 28 |
+
\Cxpp, 47 \-Cxppapx, 105
|
| 29 |
+
|
|
| 30 |
+
| /Cxpppa, 139-Cxpppax, 95
|
| 31 |
+
\Cxppp, 125
|
| 32 |
+
\Cxpppp, 133-Cxppppx, 153
|
celegans_small/raw/tree_df/Cx.txt
ADDED
|
@@ -0,0 +1,32 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
|
| 2 |
+
/CxaaCxaax-Cxaaxp
|
| 3 |
+
|
|
| 4 |
+
| /Caapa-Caapaa
|
| 5 |
+
/Cxa |
|
| 6 |
+
| | | /-Cpappv
|
| 7 |
+
| | | |
|
| 8 |
+
| \CxapCxapp-Cxappd
|
| 9 |
+
| | |
|
| 10 |
+
| | \-Caappv
|
| 11 |
+
| |
|
| 12 |
+
| \Cpapa-Cpapax
|
| 13 |
+
|
|
| 14 |
+
-Cx /Cxpaaa-Cxpaaax
|
| 15 |
+
| /Cxpaa
|
| 16 |
+
| | | /-Cxpaapx
|
| 17 |
+
| | \Cxpxap
|
| 18 |
+
| /Cxpa \-Cxppapx
|
| 19 |
+
| | |
|
| 20 |
+
| | | /Cxpapa-Cxpapax
|
| 21 |
+
| | \Cxpap
|
| 22 |
+
| | \Cxpapp-Cxpappx
|
| 23 |
+
\Cxp
|
| 24 |
+
| /Cxppaa-Cxppaax
|
| 25 |
+
| /Cxppa
|
| 26 |
+
| | | /-Cxpaapx
|
| 27 |
+
| | \Cxpxap
|
| 28 |
+
\Cxpp \-Cxppapx
|
| 29 |
+
|
|
| 30 |
+
| /Cxpppa-Cxpppax
|
| 31 |
+
\Cxppp
|
| 32 |
+
\Cxpppp-Cxppppx
|
celegans_small/raw/tree_df/Dx-ncells.txt
ADDED
|
@@ -0,0 +1,10 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
|
| 2 |
+
/Dxxa, 227-Dxxax, 134
|
| 3 |
+
|
|
| 4 |
+
-Dx/Dxx, 0 /-Dxapx, 73
|
| 5 |
+
| |
|
| 6 |
+
| |--Dxapp, 79
|
| 7 |
+
\Dxxp, 0
|
| 8 |
+
|-Dxppa, 90-Dxppax, 123
|
| 9 |
+
|
|
| 10 |
+
\Dxppp, 111-Dxpppx, 90
|
celegans_small/raw/tree_df/Dx.txt
ADDED
|
@@ -0,0 +1,10 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
|
| 2 |
+
/Dxxa-Dxxax
|
| 3 |
+
|
|
| 4 |
+
-Dx/Dxx /-Dxapx
|
| 5 |
+
| |
|
| 6 |
+
| |--Dxapp
|
| 7 |
+
\Dxxp
|
| 8 |
+
|-Dxppa-Dxppax
|
| 9 |
+
|
|
| 10 |
+
\Dxppp-Dxpppx
|
celegans_small/raw/tree_df/Exx-ncells.txt
ADDED
|
@@ -0,0 +1,8 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
|
| 2 |
+
/-Epxaa, 46
|
| 3 |
+
|
|
| 4 |
+
|--Epxpa, 40
|
| 5 |
+
-ExxExxx, 111
|
| 6 |
+
|--Eaxaa, 85
|
| 7 |
+
|
|
| 8 |
+
\-Epxpp, 53
|
celegans_small/raw/tree_df/Exx.txt
ADDED
|
@@ -0,0 +1,8 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
|
| 2 |
+
/-Epxaa
|
| 3 |
+
|
|
| 4 |
+
|--Epxpa
|
| 5 |
+
-ExxExxx
|
| 6 |
+
|--Eaxaa
|
| 7 |
+
|
|
| 8 |
+
\-Epxpp
|
celegans_small/raw/tree_df/MSx-ncells.txt
ADDED
|
@@ -0,0 +1,60 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
|
| 2 |
+
/-MSaaaaaa, 234
|
| 3 |
+
/MSaaaaa, 45
|
| 4 |
+
| \MSaaaaap, 91-MSaaaaapa, 54
|
| 5 |
+
|
|
| 6 |
+
| /-MSaaaapa, 68
|
| 7 |
+
|-MSaaaap, 73
|
| 8 |
+
| \-MSaaaapp, 45
|
| 9 |
+
/MSxaaa, 29
|
| 10 |
+
| | /-MSpaaaaa, 93
|
| 11 |
+
| |-MSpaaaa, 39
|
| 12 |
+
| | \-MSpaaaap, 67
|
| 13 |
+
| |
|
| 14 |
+
| | /-MSpaaapa, 50
|
| 15 |
+
/MSxaa, 17 \MSpaaap, 24
|
| 16 |
+
| | \-MSpaaapp, 58
|
| 17 |
+
| |
|
| 18 |
+
| | /-MSaaapaa, 64
|
| 19 |
+
| | |
|
| 20 |
+
| | /MSxaapa, 82MSxaapap, 56-MSaaapapp, 29
|
| 21 |
+
| | | |
|
| 22 |
+
| \MSxaap, 44 \-MSpaapaa, 82
|
| 23 |
+
| |
|
| 24 |
+
/MSxa, 6 \MSaaapp, 84-MSaaappp, 31
|
| 25 |
+
| |
|
| 26 |
+
| | /-MSxapaaa, 123
|
| 27 |
+
| | /MSxapaa, 126
|
| 28 |
+
| | | \MSxapaap, 131-MSxapaapa, 74
|
| 29 |
+
| | /MSxapa, 27
|
| 30 |
+
| | | | /MSxapapa, 119-MSxapapaa, 71
|
| 31 |
+
| | | \MSxapap, 103
|
| 32 |
+
| | | \-MSxapapp, 117
|
| 33 |
+
| \MSxap, 17
|
| 34 |
+
| | /-MSaappa, 111
|
| 35 |
+
| | |
|
| 36 |
+
| | | /MSxapppa, 111-MSxapppax, 117
|
| 37 |
+
-MSx \MSxapp, 42MSxappp, 279
|
| 38 |
+
| | \MSxapppp, 146-MSxappppx, 133
|
| 39 |
+
| |
|
| 40 |
+
| \MSpappa, 74-MSpappax, 50
|
| 41 |
+
|
|
| 42 |
+
| /MSxpaaa, 154-MSxpaaaa, 273
|
| 43 |
+
| /MSxpaa, 57
|
| 44 |
+
| | \MSxpaap, 0-MSxpaapp, 0
|
| 45 |
+
| /MSxpa, 17
|
| 46 |
+
| | | /MSxpapa, 160-MSxpapaa, 616
|
| 47 |
+
| | \MSxpap, 33
|
| 48 |
+
| | \MSxpapp, 199-MSxpappp, 110
|
| 49 |
+
| |
|
| 50 |
+
\MSxp, 13 /-MSxppaaa, 122
|
| 51 |
+
| /MSxppaa, 201
|
| 52 |
+
| /MSxppa, 63 \-MSxppaap, 315
|
| 53 |
+
| | |
|
| 54 |
+
| | \-MSxppap, 215
|
| 55 |
+
\MSxpp, 18
|
| 56 |
+
| /-MSxpppaa, 94
|
| 57 |
+
| /MSxpppa, 142
|
| 58 |
+
\MSxppp, 24 \-MSxpppap, 98
|
| 59 |
+
|
|
| 60 |
+
\MSxpppp, 267-MSxppppx, 85
|
celegans_small/raw/tree_df/MSx.txt
ADDED
|
@@ -0,0 +1,60 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
|
| 2 |
+
/-MSaaaaaa
|
| 3 |
+
/MSaaaaa
|
| 4 |
+
| \MSaaaaap-MSaaaaapa
|
| 5 |
+
|
|
| 6 |
+
| /-MSaaaapa
|
| 7 |
+
|-MSaaaap
|
| 8 |
+
| \-MSaaaapp
|
| 9 |
+
/MSxaaa
|
| 10 |
+
| | /-MSpaaaaa
|
| 11 |
+
| |-MSpaaaa
|
| 12 |
+
| | \-MSpaaaap
|
| 13 |
+
| |
|
| 14 |
+
| | /-MSpaaapa
|
| 15 |
+
/MSxaa \MSpaaap
|
| 16 |
+
| | \-MSpaaapp
|
| 17 |
+
| |
|
| 18 |
+
| | /-MSaaapaa
|
| 19 |
+
| | |
|
| 20 |
+
| | /MSxaapaMSxaapap-MSaaapapp
|
| 21 |
+
| | | |
|
| 22 |
+
| \MSxaap \-MSpaapaa
|
| 23 |
+
| |
|
| 24 |
+
/MSxa \MSaaapp-MSaaappp
|
| 25 |
+
| |
|
| 26 |
+
| | /-MSxapaaa
|
| 27 |
+
| | /MSxapaa
|
| 28 |
+
| | | \MSxapaap-MSxapaapa
|
| 29 |
+
| | /MSxapa
|
| 30 |
+
| | | | /MSxapapa-MSxapapaa
|
| 31 |
+
| | | \MSxapap
|
| 32 |
+
| | | \-MSxapapp
|
| 33 |
+
| \MSxap
|
| 34 |
+
| | /-MSaappa
|
| 35 |
+
| | |
|
| 36 |
+
| | | /MSxapppa-MSxapppax
|
| 37 |
+
-MSx \MSxappMSxappp
|
| 38 |
+
| | \MSxapppp-MSxappppx
|
| 39 |
+
| |
|
| 40 |
+
| \MSpappa-MSpappax
|
| 41 |
+
|
|
| 42 |
+
| /MSxpaaa-MSxpaaaa
|
| 43 |
+
| /MSxpaa
|
| 44 |
+
| | \MSxpaap-MSxpaapp
|
| 45 |
+
| /MSxpa
|
| 46 |
+
| | | /MSxpapa-MSxpapaa
|
| 47 |
+
| | \MSxpap
|
| 48 |
+
| | \MSxpapp-MSxpappp
|
| 49 |
+
| |
|
| 50 |
+
\MSxp /-MSxppaaa
|
| 51 |
+
| /MSxppaa
|
| 52 |
+
| /MSxppa \-MSxppaap
|
| 53 |
+
| | |
|
| 54 |
+
| | \-MSxppap
|
| 55 |
+
\MSxpp
|
| 56 |
+
| /-MSxpppaa
|
| 57 |
+
| /MSxpppa
|
| 58 |
+
\MSxppp \-MSxpppap
|
| 59 |
+
|
|
| 60 |
+
\MSxpppp-MSxppppx
|