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5032722 | 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 | #!/usr/bin/env python3
# -*- coding: utf-8 -*-
from prepare_for_featurization.prepare_for_featurization import main as split_n_pick
from generate_inputs.generate_inputs import samples_from_file
from utils.utils import make_sub_folder
def main(num_splits,
max_len,
seed_folder,
trees_folder,
cherries_folder):
split_file_lst = ['pfams_in_OOD_valid.tsv'] + [f'pfams_in_split{i}.tsv' for i in range(num_splits)]
for pfam_filename in split_file_lst:
splitname = pfam_filename.replace('.tsv','').split('_')[-1]
cherries_dset_prefix = f'CHERRIES_{splitname}'
with open(f'{pfam_filename}','r') as f:
pfams_in_split = [line.strip() for line in f]
file_lst = [f'{cherries_folder}/{pf}_cherries.tsv'
for pf in pfams_in_split]
for suffix in ['full_length', 'summarized_counts', 'all_metadata']:
this_split_cherries_folder = f'{cherries_dset_prefix}_{suffix}'
make_sub_folder(in_dir = '.', sub_folder=this_split_cherries_folder)
for i in range(len(pfams_in_split)):
if i % 10 == 0:
print(f'{i}/{len(pfams_in_split)}')
pfam = pfams_in_split[i]
file_of_cherries = file_lst[i]
samples_from_file(pfam = pfam,
seed_folder = seed_folder,
trees_folder = trees_folder,
filename = file_of_cherries,
dset_prefix = cherries_dset_prefix,
max_len = max_len)
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