| { | |
| "training_wkdir": "RESULTS_mixdom_gpu", | |
| "rng_seednum": 0, | |
| "data_dir": "preprocess_data/DATA", | |
| "train_dset_splits": ["CHERRIES_split0"], | |
| "dev_dset_splits": ["CHERRIES_split1"], | |
| "test_dset_splits": ["CHERRIES_split1"], | |
| "toss_alignments_longer_than": 513, | |
| "chunk_length": 512, | |
| "batch_size": 64, | |
| "num_epochs": 150, | |
| "optimizer_config": { | |
| "init_value": 0.005, | |
| "peak_value": 0.005, | |
| "end_value": 0.005, | |
| "warmup_steps": 0, | |
| "weight_decay": 0, | |
| "every_k_schedule": 1 | |
| }, | |
| "early_stop_cond1_atol": 1e-3, | |
| "early_stop_cond2_gap": 3, | |
| "patience": 5, | |
| "update_grads": true, | |
| "interms_for_tboard": { | |
| "sow_outputs": false, | |
| "forward_pass_outputs": false, | |
| "gradients": false, | |
| "optimizer": false | |
| }, | |
| "save_arrs": false, | |
| "save_per_sample_losses": false, | |
| "record_metrics_every_n_steps": 500, | |
| "checkpoint_every_t_seconds": 1800, | |
| "pred_model_type": "pairhmm_nested_tkf", | |
| "pred_config": { | |
| "load_all": false, | |
| "num_domain_mixtures": 10, | |
| "k_rate_mults": 4, | |
| "num_fragment_mixtures": 10, | |
| "num_site_mixtures": 10, | |
| "subst_model_type": "f81", | |
| "indp_rate_mults": false, | |
| "norm_rate_matrix": true, | |
| "norm_rate_mults": true, | |
| "tkf_function": "switch_tkf", | |
| "times_from": "t_per_sample" | |
| } | |
| } | |