| mkdir intermediates | |
| mv CHERRIES_valid_all_metadata intermediates/ | |
| mv CHERRIES_valid_full_length intermediates/ | |
| mv CHERRIES_valid_summarized_counts intermediates/ | |
| mv CHERRIES_split*_all_metadata intermediates/ | |
| mv CHERRIES_split*_full_length intermediates/ | |
| mv CHERRIES_split*_summarized_counts intermediates/ | |
| mv CHERRIES-FROM_*/ intermediates/ | |
| mv REMOVED-PFAMS.tsv intermediates/ | |
| mv repeats_ACROSS_families.tsv intermediates/ | |
| mv repeats_WITHIN_families.tsv intermediates/ | |
| mv SHORT-PEPS_INVALID-CHARS.tsv intermediates/ | |
| tar -czf intermediates.tar.gz intermediates/ | |
| mkdir DATA | |
| mkdir DATA/info | |
| mv pfams_in_* DATA/info | |
| mv *AAcounts_subsOnly.npy DATA | |
| mv *AAcounts.npy DATA | |
| mv *aligned_mats.npy DATA | |
| mv *delCounts.npy DATA | |
| mv *insCounts.npy DATA | |
| mv *seqs_unaligned.npy DATA | |
| mv *subCounts.npy DATA | |
| mv *transCounts.npy DATA | |
| mv *metadata.tsv DATA | |
| mv *longest_alignment.txt DATA | |
| mv *longest_seqs.txt DATA | |