#!/usr/bin/env python3 # -*- coding: utf-8 -*- import numpy as np import pandas as pd import matplotlib.pyplot as plt import matplotlib.font_manager import matplotlib.ticker as mticker from matplotlib import rc plt.rcParams['text.usetex'] = True plt.rcParams["font.family"] = 'Optima' plt.rcParams["font.size"] = 20 plt.rc('axes', unicode_minus=False) plt.tight_layout() def make_plots(log_scale: bool): aic_fig, aic_ax = plt.subplots(figsize=[8,6]) xax_lab = 'Number of parameters' def add_to_plots(mixture_type, label, color, linestyle = '-', marker = 'o'): # extract sub_df = df[ df['model_type'] == mixture_type ] sub_df = sub_df.sort_values(by='parameters') assert len(sub_df) > 0 # add to aic plot aic_ax.plot( sub_df['parameters'], sub_df['aic_gain'], marker = marker, linestyle = linestyle, color = color, label = label, linewidth = 3.5, markersize = 10) del sub_df, label add_to_plots(mixture_type = 'pairhmm_domain_mix', label = 'Mixture of domain classes', color = 'tab:purple') add_to_plots(mixture_type = 'pairhmm_fragment_mix', label = 'Mixture of fragment classes', color = 'tab:green') add_to_plots(mixture_type = 'pairhmm_site_mix', label = 'Mixture of site classes', color = 'tab:orange') aic_ax.grid() aic_ax.legend() aic_ax.set_xlabel(xax_lab) aic_ax.set_ylabel('$\Delta$AIC (×$10^7$)') new_y_tick_labels = [f"{x:.1e}".split("e")[0] for x in aic_ax.get_yticks()] aic_ax.set_yticklabels( new_y_tick_labels ) del new_y_tick_labels if log_scale: aic_ax.set_xscale('log') aic_fig.savefig(f'AIC_parameters_log_{log_scale}.pdf', bbox_inches="tight") def read_file(file): df = pd.read_csv(file, sep='\t', index_col=0) sub_df = df[ (df['dataset'] == 'data1') & (df['sub_model'] == 'f81') & (df['indel_model'] == 'tkf92') ] sub_df = sub_df[['sub_model', 'indel_model', 'model_type', 'parameters', 'aic', 'bic']] sub_df = sub_df.sort_values(by='parameters') ref = sub_df[ sub_df['model_type']=='pairhmm_reference' ] sub_df['aic_gain'] = ref['aic'].item() - sub_df['aic'] sub_df['bic_gain'] = ref['bic'].item() - sub_df['bic'] sub_df = sub_df.drop( ['aic','bic'], axis=1 ) sub_df = sub_df[ sub_df['model_type'] !='pairhmm_reference' ] return sub_df if __name__ == '__main__': df = read_file('hierarchical_mixture_models_train_set_loglikes.tsv') make_plots(log_scale = True)