FundusShift / code /fsbench /common.py
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"""Shared helpers: source registry loading and native -> harmonized label mapping."""
import re
from pathlib import Path
import yaml
CLASSES = ["N", "D", "G", "A", "M"] # canonical order; a release uses those present in train
USED_ROLES = {"dev", "test", "ood_test", "inventory"} # inventory: deduplicated, never released
_MAP_VALUES = set(CLASSES) | {"IGNORE", "EXCLUDE", "OPENSET"} # OPENSET: outside the core classes, kept as probe
def load_sources(path):
with open(path) as f:
sources = yaml.safe_load(f)["sources"]
ids = [s["id"] for s in sources]
dupes = {i for i in ids if ids.count(i) > 1}
if dupes:
raise ValueError(f"duplicate source ids: {dupes}")
for s in sources:
s["label_map"] = {str(k).strip().lower(): str(v) for k, v in (s.get("label_map") or {}).items()}
s["label_map_regex"] = [(re.compile(p, re.I), str(v)) for p, v in (s.get("label_map_regex") or [])]
bad = {v for v in s["label_map"].values()} | {v for _, v in s["label_map_regex"]}
bad -= _MAP_VALUES
if bad:
raise ValueError(f"{s['id']}: unknown map values {bad}")
_check_family_sides(sources)
return sources
def _check_family_sides(sources):
"""A family (acquisition origin) may not appear on both the development and the test side."""
side = {}
for s in sources:
if s.get("role") not in USED_ROLES:
continue
sd = "dev" if s["role"] in ("dev", "inventory") else "test"
fam = s["family"]
if side.setdefault(fam, sd) != sd:
raise ValueError(f"family {fam} is used on both dev and test side")
def map_token(token, src):
t = str(token).strip().lower()
if t in src["label_map"]:
return src["label_map"][t]
for pat, v in src["label_map_regex"]:
if pat.search(str(token).strip()):
return v
return "OTHER"
def harmonize(tokens, src):
"""Map native tokens to one harmonized class.
Returns (label or None, reason). A label is assigned only when every non-ignored token
supports the same class; any unmapped/excluded token or a mix of classes removes the image.
"""
tokens = [t for t in tokens if str(t).strip() != ""]
if not tokens:
return None, "no_native_label"
mapped = {map_token(t, src) for t in tokens} - {"IGNORE"}
if not mapped:
return None, "only_ignored_tokens"
if "EXCLUDE" in mapped:
return None, "excluded_native_label"
if "OTHER" in mapped:
return None, "unmapped_condition"
if len(mapped) > 1:
return None, "multiple_classes:" + "+".join(sorted(mapped))
return mapped.pop(), "ok"
def project_root():
return Path(__file__).resolve().parents[1]