"""FundusShift evaluation protocol (model-agnostic). Input: per-split prediction files (parquet/csv) with columns image_id, logit_N, logit_D, logit_G. 1. temperature T fitted on calibration cal_A (NLL) 2. referral threshold on max-probability chosen on cal_B for a target accepted-risk (default 5% error) 3. report on test / test_ood: accuracy, balanced accuracy, macro-F1, ECE, per-source balanced accuracy, worst-source balanced accuracy, coverage and risk at the cal_B threshold, AURC 4. test_openset: AUROC of (1 - max prob) for separating out-of-label-space images from core test images python baselines/evaluate.py --preds runs/resnet50 --repo le-dang1haha/FundusShift """ import argparse import json from pathlib import Path import numpy as np import pandas as pd from scipy.optimize import minimize_scalar from sklearn.metrics import balanced_accuracy_score, f1_score, roc_auc_score CANON = ["N", "D", "G", "A", "M"] META = ["image_id", "label", "source", "cal_subset"] def softmax(z): z = z - z.max(1, keepdims=True) e = np.exp(z) return e / e.sum(1, keepdims=True) def fit_temperature(logits, y): nll = lambda t: -np.log(softmax(logits / t)[np.arange(len(y)), y] + 1e-12).mean() return minimize_scalar(nll, bounds=(0.05, 20), method="bounded").x def ece(p, y, bins=15): conf, pred = p.max(1), p.argmax(1) edges = np.linspace(0, 1, bins + 1) e = 0.0 for lo, hi in zip(edges[:-1], edges[1:]): m = (conf > lo) & (conf <= hi) if m.any(): e += m.mean() * abs((pred[m] == y[m]).mean() - conf[m].mean()) return e def threshold_for_risk(p, y, target): """Smallest max-prob threshold whose accepted-set error <= target (falls back to accept-all).""" conf, err = p.max(1), p.argmax(1) != y order = np.argsort(-conf) cum_risk = np.cumsum(err[order]) / np.arange(1, len(y) + 1) ok = np.flatnonzero(cum_risk <= target) return float(conf[order][ok.max()]) if len(ok) else 1.0 def aurc(p, y): conf, err = p.max(1), (p.argmax(1) != y).astype(float) order = np.argsort(-conf) return float((np.cumsum(err[order]) / np.arange(1, len(y) + 1)).mean()) def report(p, y, src, thr): pred = p.argmax(1) per_src = {s: balanced_accuracy_score(y[src == s], pred[src == s]) for s in np.unique(src)} acc = p.max(1) >= thr return {"n": int(len(y)), "accuracy": float((pred == y).mean()), "balanced_accuracy": balanced_accuracy_score(y, pred), "macro_f1": f1_score(y, pred, average="macro"), "ece": ece(p, y), "aurc": aurc(p, y), "coverage_at_thr": float(acc.mean()), "risk_at_thr": float((pred[acc] != y[acc]).mean()) if acc.any() else None, "worst_source_bacc": min(per_src.values()), "per_source_bacc": per_src} def load_preds(d, split, meta): f = Path(d) / f"{split}.csv" if not f.exists(): return None return meta[split].merge(pd.read_csv(f, dtype={"image_id": str}), on="image_id", validate="1:1") def main(argv=None): ap = argparse.ArgumentParser() ap.add_argument("--preds", required=True) ap.add_argument("--repo", default="le-dang1haha/FundusShift") ap.add_argument("--target-risk", type=float, default=0.05) ap.add_argument("--splits-csv", help="local mode: metadata/splits_final.csv instead of the Hub") a = ap.parse_args(argv) head = pd.read_csv(Path(a.preds) / "calibration.csv", nrows=1) CLASSES = [c[len("logit_"):] for c in head.columns if c.startswith("logit_")] if a.splits_csv: d = pd.read_csv(a.splits_csv, dtype=str, keep_default_na=False) d["split"] = d.split.replace({"val": "validation", "cal": "calibration"}) d["label"] = [CLASSES.index(l) if l in CLASSES else -1 for l in d.label] meta = {s: g[META].reset_index(drop=True) for s, g in d.groupby("split")} else: from datasets import load_dataset ds = load_dataset(a.repo) meta = {s: ds[s].remove_columns("image").select_columns(META).to_pandas() for s in ds} L = [f"logit_{c}" for c in CLASSES] cal = load_preds(a.preds, "calibration", meta) ca, cb = cal[cal.cal_subset == "cal_A"], cal[cal.cal_subset == "cal_B"] T = fit_temperature(ca[L].to_numpy(), ca.label.to_numpy()) thr = threshold_for_risk(softmax(cb[L].to_numpy() / T), cb.label.to_numpy(), a.target_risk) out = {"temperature": T, "threshold_maxprob": thr, "target_risk": a.target_risk} for split in ["validation", "test", "test_ood"]: d = load_preds(a.preds, split, meta) if d is not None: p = softmax(d[L].to_numpy() / T) out[split] = report(p, d.label.to_numpy(), d.source.to_numpy(), thr) out[split]["ece_uncalibrated"] = ece(softmax(d[L].to_numpy()), d.label.to_numpy()) o, t = load_preds(a.preds, "test_openset", meta), load_preds(a.preds, "test", meta) if o is not None and t is not None: po, pt = softmax(o[L].to_numpy() / T), softmax(t[L].to_numpy() / T) score = np.r_[1 - pt.max(1), 1 - po.max(1)] out["test_openset"] = {"auroc_msp": roc_auc_score(np.r_[np.zeros(len(pt)), np.ones(len(po))], score), "fraction_referred_at_thr": float((po.max(1) < thr).mean())} print(json.dumps(out, indent=2, default=float)) (Path(a.preds) / "metrics.json").write_text(json.dumps(out, indent=2, default=float)) if __name__ == "__main__": main()