"""Frozen-feature linear probe: a fast difficulty check of the FundusShift splits. Features: frozen backbone (default DINOv2-small, CLS + mean patch token) on the released images. Classifier: logistic regression with (source, class)-balanced sample weights; C chosen on validation. Reports balanced accuracy / macro-F1 per split and per source, worst test source, and open-set AUROC. python baselines/linear_probe.py --bench data/bench --processed data/processed --out runs/probe_dinov2s """ import argparse import json from pathlib import Path import numpy as np import pandas as pd import torch from PIL import Image from sklearn.linear_model import LogisticRegression from sklearn.metrics import balanced_accuracy_score, cohen_kappa_score, f1_score, roc_auc_score from sklearn.preprocessing import StandardScaler from transformers import AutoImageProcessor, AutoModel CANON = ["N", "D", "G", "A", "M"] SPLITS = ["train", "validation", "calibration", "test", "test_ood", "test_openset"] class _DS(torch.utils.data.Dataset): def __init__(self, paths, proc): self.paths, self.proc = paths, proc def __len__(self): return len(self.paths) def __getitem__(self, i): return self.proc(images=Image.open(self.paths[i]).convert("RGB"), return_tensors="pt")["pixel_values"][0] @torch.no_grad() def features(paths, model_name, device): proc = AutoImageProcessor.from_pretrained(model_name) model = AutoModel.from_pretrained(model_name).to(device).eval() dl = torch.utils.data.DataLoader(_DS(paths, proc), batch_size=64, num_workers=6) out = [] for x in dl: h = model(pixel_values=x.to(device)).last_hidden_state out.append(torch.cat([h[:, 0], h[:, 1:].mean(1)], 1).float().cpu().numpy()) return np.concatenate(out) def main(argv=None): ap = argparse.ArgumentParser() ap.add_argument("--bench", required=True) ap.add_argument("--processed", required=True) ap.add_argument("--out", required=True) ap.add_argument("--model", default="facebook/dinov2-small") a = ap.parse_args(argv) out = Path(a.out) out.mkdir(parents=True, exist_ok=True) d = pd.read_csv(Path(a.bench) / "splits_final.csv", dtype=str, keep_default_na=False) d = d[d.split.isin(SPLITS)].reset_index(drop=True) feat_file = out / "features.npy" if feat_file.exists(): X = np.load(feat_file) else: device = "mps" if torch.backends.mps.is_available() else ("cuda" if torch.cuda.is_available() else "cpu") X = features([str(Path(a.processed) / s / f"{i}.jpg") for s, i in zip(d.source, d.image_id)], a.model, device) np.save(feat_file, X) CLASSES = [c for c in CANON if c in set(d.label[d.split == "train"])] y = np.array([CLASSES.index(l) if l in CLASSES else -1 for l in d.label]) sp = d.split.to_numpy() tr = sp == "train" sc = StandardScaler().fit(X[tr]) Xs = sc.transform(X) cell = pd.Series(list(zip(d.source[tr], d.label[tr]))) w = (1.0 / cell.map(cell.value_counts())).to_numpy().copy() w *= len(w) / w.sum() best = None for C in [0.001, 0.003, 0.01, 0.03, 0.1]: clf = LogisticRegression(C=C, max_iter=3000).fit(Xs[tr], y[tr], sample_weight=w) va = sp == "validation" b = balanced_accuracy_score(y[va], clf.predict(Xs[va])) print(f"C={C}: val bacc {b:.4f}") if best is None or b > best[0]: best = (b, C, clf) _, C, clf = best P = clf.predict_proba(Xs) res = {"model": a.model, "C": C} for s in ["train", "validation", "calibration", "test", "test_ood"]: m = sp == s pred = P[m].argmax(1) per_src = {src: round(balanced_accuracy_score(y[m][d.source[m] == src], pred[d.source[m] == src]), 4) for src in sorted(set(d.source[m]))} recall = {c: round(float((pred[y[m] == k] == k).mean()), 4) for k, c in enumerate(CLASSES) if (y[m] == k).any()} res[s] = {"balanced_accuracy": round(balanced_accuracy_score(y[m], pred), 4), "macro_f1": round(f1_score(y[m], pred, average="macro"), 4), "recall": recall, "per_source_bacc": per_src, "worst_source_bacc": min(per_src.values())} t, o = sp == "test", sp == "test_openset" res["test_openset_auroc_msp"] = round(roc_auc_score(np.r_[np.zeros(t.sum()), np.ones(o.sum())], np.r_[1 - P[t].max(1), 1 - P[o].max(1)]), 4) res["classes"] = CLASSES # task 3: DR grading (ICDR 0-4) on images that carry a grade g = pd.to_numeric(d.dr_grade, errors="coerce").fillna(-1).astype(int).to_numpy() gtr = tr & (g >= 0) if gtr.any() and ((sp == "test") & (g >= 0)).any(): cw = pd.Series(list(zip(d.source[gtr], g[gtr]))) wg = (1.0 / cw.map(cw.value_counts())).to_numpy().copy() reg = LogisticRegression(C=C, max_iter=3000).fit(Xs[gtr], g[gtr], sample_weight=wg * len(wg) / wg.sum()) res["dr_grading"] = {} for s_ in ["validation", "test"]: m = (sp == s_) & (g >= 0) pred = reg.predict(Xs[m]) res["dr_grading"][s_] = {"n": int(m.sum()), "quadratic_kappa": round(cohen_kappa_score(g[m], pred, weights="quadratic"), 4), "accuracy": round(float((pred == g[m]).mean()), 4), "sources": sorted(set(d.source[m]))} print(json.dumps(res, indent=2)) (out / "probe_metrics.json").write_text(json.dumps(res, indent=2)) if __name__ == "__main__": main()