"""Step 6a: render the Hugging Face dataset card from hf/card_template.md + computed tables. python -m fsbench.make_card --bench data/bench --sources configs/fundusshift_open.yaml --out hf/README.md Placeholders: {{SPLIT_TABLE}} {{SOURCE_TABLE}} {{UNUSED_TABLE}} {{REUSE_TABLE}} {{CHECKS_TABLE}} {{N_*}} {{SHORTCUT}} """ import argparse import json import re from pathlib import Path import pandas as pd import yaml from .common import CLASSES SPLITS = ["train", "validation", "calibration", "test", "test_ood", "test_openset"] def md(df): df = df.reset_index() if df.index.name or isinstance(df.index, pd.MultiIndex) else df return "\n".join(["| " + " | ".join(map(str, df.columns)) + " |", "|" + "---|" * len(df.columns)] + ["| " + " | ".join(map(str, r)) + " |" for r in df.itertuples(index=False)]) def probe_section(path): r = json.loads(Path(path).read_text()) rows = [("validation (in-distribution)", "validation"), ("calibration", "calibration"), ("**test** (held-out collections)", "test"), ("**test_ood** (Chákṣu, handheld)", "test_ood")] classes = list(r["test"]["recall"]) if "classes" not in r else r["classes"] t = f"| split | balanced acc | macro-F1 | recall {' / '.join(classes)} | worst collection (bAcc) |\n|---|---|---|---|---|\n" for name, k in rows: m = r[k] rec = " / ".join(f"{m['recall'][c]:.2f}" if c in m["recall"] else "–" for c in classes) w = min(m["per_source_bacc"], key=m["per_source_bacc"].get) t += f"| {name} | {m['balanced_accuracy']:.3f} | {m['macro_f1']:.3f} | {rec} | {w} ({m['per_source_bacc'][w]:.3f}) |\n" ps = "| test collection | bAcc |\n|---|---|\n" + "".join( f"| {k} | {v:.3f} |\n" for k, v in sorted(r["test"]["per_source_bacc"].items(), key=lambda x: x[1])) drop = r["validation"]["balanced_accuracy"] - r["test"]["balanced_accuracy"] return (f"## Reference result: frozen-feature linear probe\n\n" f"Frozen {r['model'].split('/')[-1]} features (CLS + mean patch token, 224 px), logistic regression with " f"(collection, class)-balanced weights, C selected on validation (`code/baselines/linear_probe.py`). " f"A difficulty check, not a tuned baseline.\n\n{t}\n{ps}\n" f"Open-set AUROC (max-softmax, `test_openset` vs `test`): **{r['test_openset_auroc_msp']:.3f}**.\n\n" f"Balanced accuracy drops by **{drop * 100:.1f} points** from validation to the held-out collections. " f"Single-class collections (e.g. HYGD) report recall of that class." + (f"\n\n**Task 3 (DR grading, same frozen features):** quadratic weighted kappa " f"{r['dr_grading']['validation']['quadratic_kappa']:.3f} on validation vs " f"**{r['dr_grading']['test']['quadratic_kappa']:.3f}** on held-out " f"{', '.join(r['dr_grading']['test']['sources'])} (n = {r['dr_grading']['test']['n']})." if "dr_grading" in r else "")) def main(argv=None): ap = argparse.ArgumentParser() ap.add_argument("--bench", required=True) ap.add_argument("--sources", required=True) ap.add_argument("--template", default=str(Path(__file__).resolve().parents[1] / "hf/card_template.md")) ap.add_argument("--out", required=True) ap.add_argument("--probe", help="probe_metrics.json from baselines/linear_probe.py") a = ap.parse_args(argv) bench = Path(a.bench) src = {s["id"]: s for s in yaml.safe_load(open(a.sources))["sources"]} d = pd.read_csv(bench / "splits_final.csv", dtype=str, keep_default_na=False) u = d[d.split.isin(SPLITS)] st = pd.crosstab(u.split, u.label).reindex(index=SPLITS, fill_value=0) st = st[[c for c in [*CLASSES, "OPENSET"] if c in st.columns]] st["total"] = st.sum(axis=1) st.loc["**all**"] = st.sum() st.index.name = "split" side = u.groupby("source").split.agg(lambda s: "/".join(sorted(set(s)))) sc = pd.crosstab(u.source, u.label).reindex(columns=[c for c in [*CLASSES, "OPENSET"] if c in set(u.label)], fill_value=0) inv = d.groupby("source").size().rename("inventory") sc = sc.join(inv) sc.insert(0, "splits", side) sc.insert(1, "country", [src[s].get("country", "") for s in sc.index]) sc.insert(2, "device", [src[s].get("device", "") for s in sc.index]) sc["licence"] = [src[s].get("licence", "") for s in sc.index] order = {"train/validation/calibration": 0} sc = sc.sort_values(["splits", "inventory"], ascending=[True, False]) sc.index.name = "source" rg = pd.crosstab(u.region, u.split).reindex(columns=SPLITS, fill_value=0) rg.index.name = "region" un = d[d.split == "unused"].unused_reason.value_counts().rename("images") un.index.name = "reason" reuse = pd.read_csv(bench / "cross_source_reuse.csv") checks = re.search(r"## Leakage checks\n\n(.*?)\n\n", (bench / "audit_report.md").read_text(), re.S).group(1) sc_auc = pd.read_csv(bench / "eda/shortcut_auc.csv") eda = (bench / "eda/eda_report.md").read_text() m = re.search(r"balanced accuracy \*\*([0-9.]+)\*\*\s*\(chance ([0-9.]+)", eda) rep = {"{{SPLIT_TABLE}}": md(st), "{{PROBE_SECTION}}": probe_section(a.probe) if a.probe else "", "{{REGION_TABLE}}": md(rg), "{{SOURCE_TABLE}}": md(sc), "{{UNUSED_TABLE}}": md(un), "{{REUSE_TABLE}}": md(reuse) if len(reuse) else "none detected", "{{CHECKS_TABLE}}": checks, "{{N_INVENTORY}}": f"{len(d):,}", "{{N_RELEASED}}": f"{len(u):,}", "{{N_SOURCES}}": str(u.source.nunique()), "{{SRC_BACC}}": m.group(1) if m else "?", "{{SRC_CHANCE}}": m.group(2) if m else "?", "{{SHORTCUT_TABLE}}": md(sc_auc.sort_values("auc_trivial_features", ascending=False).round(3))} text = Path(a.template).read_text() for k, v in rep.items(): text = text.replace(k, v) Path(a.out).write_text(text) print(f"card -> {a.out}") if __name__ == "__main__": main()