"""Step 3b: standardize released images + per-image quality statistics. For every image in splits.csv (split != unused, plus a quality row for every readable image): - crop to the illuminated fundus field (black border removed), resize longest side to --size, JPEG q95 - quality stats on the original: field-of-view fraction, mean brightness, RMS contrast, Laplacian sharpness, clipped-dark / clipped-bright fractions python -m fsbench.process_images --raw data/raw --bench data/bench --out data/processed --size 1024 """ import argparse import os from concurrent.futures import ProcessPoolExecutor from pathlib import Path import numpy as np import pandas as pd from PIL import Image from .hashing import crop_fundus Image.MAX_IMAGE_PIXELS = None def _quality(img): rgb = np.asarray(img.convert("RGB"), dtype=np.float32) small = np.asarray(img.convert("L").resize((512, int(512 * img.height / img.width) or 1)), dtype=np.float32) fov = rgb.max(axis=2) > 15 g = small lap = g[1:-1, 1:-1] * 4 - g[:-2, 1:-1] - g[2:, 1:-1] - g[1:-1, :-2] - g[1:-1, 2:] inside = rgb[fov] if fov.any() else rgb.reshape(-1, 3) lum = inside.mean(axis=1) return {"fov_fraction": float(fov.mean()), "brightness": float(lum.mean()), "contrast": float(lum.std()), "sharpness": float(lap.var()), "dark_clip": float((lum < 10).mean()), "bright_clip": float((lum > 245).mean()), "mean_r": float(inside[:, 0].mean()), "mean_g": float(inside[:, 1].mean()), "mean_b": float(inside[:, 2].mean())} def _work(args): src_path, dst_path, size = args try: with Image.open(src_path) as im: im.load() im = im.convert("RGB") q = _quality(im) c = crop_fundus(im) if max(c.size) > size: s = size / max(c.size) c = c.resize((max(1, round(c.width * s)), max(1, round(c.height * s))), Image.LANCZOS) if dst_path: Path(dst_path).parent.mkdir(parents=True, exist_ok=True) c.save(dst_path, "JPEG", quality=95) return {**q, "proc_width": c.width, "proc_height": c.height, "proc_error": ""} except Exception as e: return {"proc_error": repr(e)[:200]} def main(argv=None): ap = argparse.ArgumentParser() ap.add_argument("--raw", required=True) ap.add_argument("--bench", required=True) ap.add_argument("--out", required=True) ap.add_argument("--size", type=int, default=1024) ap.add_argument("--workers", type=int, default=os.cpu_count()) a = ap.parse_args(argv) s = pd.read_csv(Path(a.bench) / "splits.csv", dtype=str, keep_default_na=False) s = s[s.unused_reason != "file_missing"] jobs = [(str(Path(a.raw) / r.source / r.rel_path), str(Path(a.out) / r.source / f"{r.image_id}.jpg") if r.split != "unused" else "", a.size) for r in s.itertuples()] with ProcessPoolExecutor(a.workers) as ex: res = list(ex.map(_work, jobs, chunksize=32)) q = pd.DataFrame(res) q.insert(0, "image_id", s.image_id.to_numpy()) q.to_csv(Path(a.bench) / "quality.csv", index=False) print(f"processed {len(q)} images; errors: {(q.proc_error.fillna('') != '').sum()}") if __name__ == "__main__": main()