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license: cc-by-4.0
language:
- en
---
# Galaxy Tool Shed Vector Store
This dataset is part of the [Knime2Galaxy](https://github.com/rmassei/imaging_KNIME_to_Galaxy.git) project, which aims to build a
Retrieval-Augmented Generation (RAG) pipeline for translating KNIME workflows into Galaxy workflows.
## Overview
This dataset enables semantic search over Galaxy tools to support automated workflow translation.
Galaxy tools are embedded into a vector space, allowing retrieval of the most relevant tools corresponding to KNIME workflow nodes.
## Method
- All available Galaxy tools are embedded using the Qwen/Qwen3-Embedding-4B model
- Given a KNIME node, similar Galaxy tools are retrieved via vector similarity search
- Retrieved tools are assembled into a valid Galaxy workflow JSON
- The workflow is exported as a `.ga` file
## Contents
- Vector embeddings of Galaxy Tool Shed tools
## Use Cases
- Automated KNIME to Galaxy workflow translation
- Semantic search over Galaxy tools
- RAG-based tool recommendation systems
## Notes
- Workflow generation logic is implemented in the main project repository
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