function out = RestingAlphaPeak(EEG,settings,filename,eyes,outpathfile) fprintf('\n:::RestingAlphaPeak...\n') settings % define the window of interest idxlower = find(EEG.freqs == settings.alphapeak.lower); idxupper = find(EEG.freqs == settings.alphapeak.upper); freqRes = EEG.freqs(2)-EEG.freqs(1); freqRange =[settings.alphapeak.lower:freqRes:settings.alphapeak.upper]; %% average the posterior cluster clusterindex = ismember({EEG.chanlocs.labels}, settings.alphapeak.postelectrodes); PostSpectro = mean(EEG.specdata(clusterindex,idxlower:idxupper)); %% 1) find the maximimum point [~ , maxPeak ] = max(PostSpectro) window = maxPeak-settings.alphapeak.window:maxPeak+settings.alphapeak.window; if maxPeak - settings.alphapeak.window/freqRes < 1 || maxPeak + settings.alphapeak.window/freqRes > length(freqRange) % this is if the peak is at the borders of the search window amplitudeMax = NaN; maxPeak = NaN; else amplitudeMax = mean(PostSpectro(window)); end %% 2) check the first derivative derivPolarity = diff(PostSpectro) > 0 ; % find the place where it crosses zero coming... derivPeak = find(diff(derivPolarity) == -1)+1 ; % from positive to negative == peak! window = derivPeak-settings.alphapeak.window:derivPeak+settings.alphapeak.window; if isempty(derivPeak) derivPeak = NaN; amplitudeDer = NaN; elseif numel(derivPeak) > 1 derivPeak = NaN; amplitudeDer = NaN; elseif derivPeak - settings.alphapeak.window/freqRes < 1 || derivPeak + settings.alphapeak.window/freqRes > length(freqRange) amplitudeDer = NaN; derivPeak = NaN; else amplitudeDer = mean(PostSpectro(window)); end %% 3) 'gravity method' weighted mean % uses all electrodes AllSpectro = mean(EEG.specdata(:,idxlower:idxupper)); %(sum(a(f) x f))/(Sum a(f)). (Klimesch, 1999) gravalphapeak = sum((AllSpectro .* freqRange))./ sum(AllSpectro); gravamplitude= interp1(freqRange,AllSpectro,gravalphapeak); % check if the peak of both methods is equal or not if maxPeak == derivPeak fprintf('\n:::one identifiable peak...\n') uniquelyIdentifiable = 1; elseif isnan(maxPeak) || isnan(derivPeak) fprintf('\n:::no identifiable peak...\n') uniquelyIdentifiable = 0; else fprintf('\n:::more or no identifiable peak...\n') uniquelyIdentifiable = 0; end % plot the peaks f=figure; plot(freqRange,PostSpectro) hold all plot(freqRange,AllSpectro) if ~isnan(maxPeak) plot([freqRange(maxPeak),freqRange(maxPeak)],[max(PostSpectro) max(PostSpectro)],'o') end if ~isnan(derivPeak) plot([freqRange(derivPeak),freqRange(derivPeak)],[max(PostSpectro) max(PostSpectro)],'*') end plot([gravalphapeak,gravalphapeak],[max(AllSpectro) max(AllSpectro)],'o') legend('Posterior Power','all Electrodes','maxPeak','derivPeak','gravityPeak') title([filename '_' eyes '_Alphapeak.png']); if settings.alphapeak.saveplot == 1 saveas(f,[outpathfile eyes '_Alphapeak.png']); end close all if isnan(maxPeak) out.alphapeakfreqMax = NaN; out.alphapeakamplitudeMax = NaN; else out.alphapeakfreqMax = freqRange(maxPeak); out.alphapeakamplitudeMax = amplitudeMax; end if isnan(derivPeak) out.alphapeakfreqDerivative = NaN; out.alphapeakamplitudeDerivative = NaN; else out.alphapeakfreqDerivative = freqRange(derivPeak); out.alphapeakamplitudeDerivative = amplitudeDer; end out.alphapeakfreqGravity = gravalphapeak; out.alphapeakamplitudeGravity = gravamplitude; out.uniquelyIdentifiable = uniquelyIdentifiable; end