Upload folder using huggingface_hub
Browse filesThis view is limited to 50 files because it contains too many changes. See raw diff
- interpro_active_site/advanced/idx2term.json +1 -0
- interpro_active_site/basic/idx2term.json +1 -0
- interpro_active_site/consensus.joblib +3 -0
- interpro_active_site/df_merge.tsv +1 -0
- interpro_active_site/metrics.json +7 -0
- interpro_active_site/paths.json +1 -0
- interpro_active_site/result.tsv +5 -0
- interpro_active_site/selections.json +1 -0
- interpro_binding_site/advanced/idx2term.json +1 -0
- interpro_binding_site/advanced/plot_0.png +3 -0
- interpro_binding_site/basic/idx2term.json +1 -0
- interpro_binding_site/basic/plot_0.png +3 -0
- interpro_binding_site/consensus.joblib +3 -0
- interpro_binding_site/df_merge.tsv +2 -0
- interpro_binding_site/metrics.json +7 -0
- interpro_binding_site/paths.json +1 -0
- interpro_binding_site/result.tsv +3 -0
- interpro_binding_site/selections.json +1 -0
- interpro_conserved_site/advanced/idx2term.json +1 -0
- interpro_conserved_site/advanced/plot_0.png +3 -0
- interpro_conserved_site/basic/idx2term.json +1 -0
- interpro_conserved_site/basic/plot_0.png +3 -0
- interpro_conserved_site/basic/plot_1.png +3 -0
- interpro_conserved_site/basic/plot_2.png +3 -0
- interpro_conserved_site/consensus.joblib +3 -0
- interpro_conserved_site/df_merge.tsv +3 -0
- interpro_conserved_site/metrics.json +7 -0
- interpro_conserved_site/paths.json +1 -0
- interpro_conserved_site/result.tsv +29 -0
- interpro_conserved_site/selections.json +1 -0
- interpro_domain/advanced/idx2term.json +1 -0
- interpro_domain/advanced/plot_0.png +3 -0
- interpro_domain/advanced/plot_1.png +3 -0
- interpro_domain/advanced/plot_2.png +3 -0
- interpro_domain/basic/idx2term.json +1 -0
- interpro_domain/basic/plot_0.png +3 -0
- interpro_domain/basic/plot_1.png +3 -0
- interpro_domain/basic/plot_2.png +3 -0
- interpro_domain/basic/plot_3.png +3 -0
- interpro_domain/basic/plot_4.png +3 -0
- interpro_domain/basic/plot_5.png +3 -0
- interpro_domain/consensus.joblib +3 -0
- interpro_domain/df_merge.tsv +8 -0
- interpro_domain/metrics.json +7 -0
- interpro_domain/paths.json +1 -0
- interpro_domain/result.tsv +165 -0
- interpro_domain/selections.json +0 -0
- interpro_family/advanced/idx2term.json +1 -0
- interpro_family/advanced/plot_0.png +3 -0
- interpro_family/advanced/plot_1.png +3 -0
interpro_active_site/advanced/idx2term.json
ADDED
|
@@ -0,0 +1 @@
|
|
|
|
|
|
|
| 1 |
+
{}
|
interpro_active_site/basic/idx2term.json
ADDED
|
@@ -0,0 +1 @@
|
|
|
|
|
|
|
| 1 |
+
{}
|
interpro_active_site/consensus.joblib
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:33063fefa80d5337b9a8ceecfcc51c0d6ce6c5b0da035d7a2bf3e6a41ed7587d
|
| 3 |
+
size 58351
|
interpro_active_site/df_merge.tsv
ADDED
|
@@ -0,0 +1 @@
|
|
|
|
|
|
|
| 1 |
+
term overlap setsize score pval overlap_mean setsize_mean score_mean pval_mean overlap_std setsize_std score_std pval_std pval_hit pval_50 pval_100 pval_250 pval_500
|
interpro_active_site/metrics.json
ADDED
|
@@ -0,0 +1,7 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"type_of_task": "ranksum",
|
| 3 |
+
"signature_size": 2468,
|
| 4 |
+
"annotations_size": 52,
|
| 5 |
+
"title": "Average number of proteins per term",
|
| 6 |
+
"value": 2.3076923076923075
|
| 7 |
+
}
|
interpro_active_site/paths.json
ADDED
|
@@ -0,0 +1 @@
|
|
|
|
|
|
|
| 1 |
+
{"results_path": "results/proteins/hek293t_core/interpro_active_site/fragment/C413/C413_val_log2fc"}
|
interpro_active_site/result.tsv
ADDED
|
@@ -0,0 +1,5 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
Term es nes pval sidak fdr geneset_size leading_edge leading_edge_size
|
| 2 |
+
Serine carboxypeptidase, serine active site [IPR018202] 0.964705882352941 1.7484222955378037 0.0803909300076641 0.98719531814025 0.2762202243298093 3 Q9HB40,P10619 2
|
| 3 |
+
ATPase, alpha/beta subunit, nucleotide-binding domain, active site [IPR020003] 0.7831456535126627 1.5961153281635694 0.1104630470564731 0.9977273754374688 0.3191154692742557 4 P25705 1
|
| 4 |
+
Histidine acid phosphatase active site [IPR033379] 0.9225466342254632 1.1148997982375224 0.2648933631858736 0.9999998877418516 0.5988893428550187 2 Q9NPH0 1
|
| 5 |
+
Pyridine nucleotide-disulphide oxidoreductase, class I, active site [IPR012999] 0.5914069952379943 0.3536519170647668 0.7235997612734619 1.0 0.9567375452951876 3 P00390 1
|
interpro_active_site/selections.json
ADDED
|
@@ -0,0 +1 @@
|
|
|
|
|
|
|
| 1 |
+
{"all_annotations": ["ATP-citrate lyase/succinyl-CoA ligase, active site [IPR017440]", "ATP:guanido phosphotransferase active site [IPR022415]", "ATPase, alpha/beta subunit, nucleotide-binding domain, active site [IPR020003]", "Adenosine/AMP deaminase active site [IPR006650]", "Adenylosuccinate synthase, active site [IPR033128]", "Beta-ketoacyl synthase, active site [IPR018201]", "Citrate synthase active site [IPR019810]", "ClpP, Ser active site [IPR018215]", "ClpP, histidine active site [IPR033135]", "Cysteine peptidase, asparagine active site [IPR025661]", "Cysteine peptidase, cysteine active site [IPR000169]", "Cysteine peptidase, histidine active site [IPR025660]", "DNA methylase, C-5 cytosine-specific, active site [IPR018117]", "DNA topoisomerase I, active site [IPR018521]", "Ferrochelatase, active site [IPR019772]", "Glucose-6-phosphate dehydrogenase, active site [IPR019796]", "Glutaredoxin active site [IPR011767]", "Glyceraldehyde 3-phosphate dehydrogenase, active site [IPR020830]", "Glycosyl hydrolases family 31, active site [IPR030458]", "Histidine acid phosphatase active site [IPR033379]", "Hydroxymethylglutaryl-coenzyme A synthase, active site [IPR000590]", "L-lactate dehydrogenase, active site [IPR018177]", "Leu/Phe/Val dehydrogenases active site [IPR033524]", "Malate dehydrogenase, active site [IPR001252]", "Nucleoside diphosphate kinase, active site [IPR023005]", "Orotidine 5'-phosphate decarboxylase, active site [IPR018089]", "Peptidase S16, active site [IPR008268]", "Peptidase S26A, signal peptidase I, serine active site [IPR019756]", "Peptidase S8, subtilisin, His-active site [IPR022398]", "Peptidase S8, subtilisin, Ser-active site [IPR023828]", "Peptidase S9, serine active site [IPR002471]", "Peptidase family C14A, His active site [IPR016129]", "Peptidase family C14A, cysteine active site [IPR033139]", "Phosphoglycerate/bisphosphoglycerate mutase, active site [IPR001345]", "Phosphoribosylglycinamide formyltransferase, active site [IPR001555]", "Protein-tyrosine phosphatase, active site [IPR016130]", "Pyridine nucleotide-disulphide oxidoreductase, class I, active site [IPR012999]", "Pyruvate kinase, active site [IPR018209]", "Ribonuclease T2, His active site 1 [IPR018188]", "Ribonuclease T2, His active site 2 [IPR033130]", "Ribonucleotide reductase small subunit, acitve site [IPR030475]", "Serine carboxypeptidase, serine active site [IPR018202]", "Serine carboxypeptidases, histidine active site [IPR033124]", "Serine/threonine-protein kinase, active site [IPR008271]", "Thermonuclease active site [IPR002071]", "Thiolase, active site [IPR020610]", "Thiolase, acyl-enzyme intermediate active site [IPR020615]", "Transaldolase, active site [IPR018225]", "Triosephosphate isomerase, active site [IPR020861]", "Tyrosine-protein kinase, active site [IPR008266]", "Ubiquitin-activating enzyme E1, Cys active site [IPR033127]", "Ubiquitin-conjugating enzyme, active site [IPR023313]"], "available_proteins": ["ACAA2", "ACAT1", "ACAT2", "ACLY", "ACP2", "ACP6", "ADA", "ADSS", "APEH", "ATP5A1", "ATP5B", "ATP6V1A", "ATP6V1B2", "BLMH", "CAMK4", "CAPN1", "CASP2", "CASP3", "CDC34", "CDK1", "CDK12", "CDK2", "CDK4", "CDK5", "CDK6", "CKB", "CKMT1A*", "CLPP", "CPVL", "CS", "CSK", "CSNK1A1", "CSNK2A2", "CTSA", "CTSB", "DLD", "DNMT1", "DUSP3", "EIF2AK2", "FASN", "FECH", "G6PD", "GAA", "GAK", "GANAB", "GAPDH", "GART", "GLRX", "GLUD1", "GSK3A", "GSK3B", "GSR", "HADHB", "HMGCS1", "LDHA", "LDHB", "LONP1", "MAP2K1", "MAP2K2", "MAP4K4", "MAPK1", "MAPK3", "MARK2", "MDH1", "MDH2", "NEK9", "NME1", "NME2", "PAK2", "PBK", "PGAM1", "PIK3R4", "PKM", "PKN2", "PREP", "PRKAA2", "PRKACA", "PRPF4B", "PTK7", "PTPN1", "PTPN11", "RNASET2", "ROCK1", "RPS6KA3", "RRM2", "SCP2", "SCPEP1", "SEC11A", "SLK", "SND1", "SRPK1", "SUCLG1", "TALDO1", "TIGAR", "TOP1", "TPI1", "TPP2", "TXNRD1", "UBA1", "UBA2", "UBA3", "UBE2K", "UBE2L3", "UBE2M", "UBE2N", "UBE2S", "UMPS", "VRK1", "VRK2"], "leading_proteins": ["ACP6", "ATP5A1", "CTSA", "GSR", "SCPEP1"]}
|
interpro_binding_site/advanced/idx2term.json
ADDED
|
@@ -0,0 +1 @@
|
|
|
|
|
|
|
| 1 |
+
{"0": "Beta tubulin, autoregulation binding site [IPR013838]"}
|
interpro_binding_site/advanced/plot_0.png
ADDED
|
Git LFS Details
|
interpro_binding_site/basic/idx2term.json
ADDED
|
@@ -0,0 +1 @@
|
|
|
|
|
|
|
| 1 |
+
{"0": "Beta tubulin, autoregulation binding site [IPR013838]"}
|
interpro_binding_site/basic/plot_0.png
ADDED
|
Git LFS Details
|
interpro_binding_site/consensus.joblib
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:eca5e81f636d6aa1206e011328de66c52c21b55aa74e4df00d8a00080a2b1d48
|
| 3 |
+
size 56876
|
interpro_binding_site/df_merge.tsv
ADDED
|
@@ -0,0 +1,2 @@
|
|
|
|
|
|
|
|
|
|
| 1 |
+
term overlap setsize score pval overlap_mean setsize_mean score_mean pval_mean overlap_std setsize_std score_std pval_std pval_hit pval_50 pval_100 pval_250 pval_500
|
| 2 |
+
Beta tubulin, autoregulation binding site [IPR013838] 5 6 2.5088682548478696 0.0121118647835629 3.5533980582524274 5.54126213592233 0.5823511994709325 0.3808337519133083 1.5578062452886454 0.9632803779920796 1.1906256051626651 0.3058955364405814 7.712537917689981e-09 1.0 1.0 1.5040937032126972e-08 9.6474859037805e-07
|
interpro_binding_site/metrics.json
ADDED
|
@@ -0,0 +1,7 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"type_of_task": "ranksum",
|
| 3 |
+
"signature_size": 2468,
|
| 4 |
+
"annotations_size": 27,
|
| 5 |
+
"title": "Average number of proteins per term",
|
| 6 |
+
"value": 4.148148148148148
|
| 7 |
+
}
|
interpro_binding_site/paths.json
ADDED
|
@@ -0,0 +1 @@
|
|
|
|
|
|
|
| 1 |
+
{"results_path": "results/proteins/hek293t_core/interpro_binding_site/fragment/C413/C413_val_log2fc"}
|
interpro_binding_site/result.tsv
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
Term es nes pval sidak fdr geneset_size leading_edge leading_edge_size
|
| 2 |
+
Beta tubulin, autoregulation binding site [IPR013838] 0.9057676685621424 2.5088682548478696 0.0121118647835629 0.2803691450892229 0.1680032629543322 6 Q9BVA1,Q13885,P68371,P07437,Q9BUF5 5
|
| 3 |
+
Peptidase M16, zinc-binding site [IPR001431] 0.6925200619354892 1.3923289230864375 0.1638228169284949 0.9920190527038948 0.4914684507854849 5 P22695 1
|
interpro_binding_site/selections.json
ADDED
|
@@ -0,0 +1 @@
|
|
|
|
|
|
|
| 1 |
+
{"all_annotations": ["2-oxo acid dehydrogenase, lipoyl-binding site [IPR003016]", "2Fe-2S ferredoxin, iron-sulphur binding site [IPR006058]", "6-phosphogluconate-binding site [IPR006184]", "AP endonuclease 1, binding site [IPR020847]", "APOBEC/CMP deaminase, zinc-binding [IPR016192]", "Aconitase family, 4Fe-4S cluster binding site [IPR018136]", "Adenylosuccinate synthase, GTP-binding site [IPR018220]", "Aminotransferase class-V, pyridoxal-phosphate binding site [IPR020578]", "Aminotransferase, class-II, pyridoxal-phosphate binding site [IPR001917]", "Aminotransferases, class-I, pyridoxal-phosphate-binding site [IPR004838]", "Beta tubulin, autoregulation binding site [IPR013838]", "Biotin-binding site [IPR001882]", "Copper centre Cu(A) [IPR001505]", "Cytochrome b5, heme-binding site [IPR018506]", "Cytochrome c oxidase, subunit Vb, zinc binding site [IPR020893]", "EF-Hand 1, calcium-binding site [IPR018247]", "Fumarate reductase/succinate dehydrogenase, FAD-binding site [IPR003952]", "Hexokinase, binding site [IPR019807]", "IQ motif, EF-hand binding site [IPR000048]", "PPM-type phosphatase, divalent cation binding [IPR000222]", "Peptidase M16, zinc-binding site [IPR001431]", "Peptidase M24A, methionine aminopeptidase, subfamily 2, binding site [IPR018349]", "Protein kinase, ATP binding site [IPR017441]", "RNA polymerases, subunit N, zinc binding site [IPR020789]", "Serine hydroxymethyltransferase, pyridoxal phosphate binding site [IPR019798]", "Sigma-54 interaction domain, ATP-binding site 1 [IPR025662]", "Transketolase binding site [IPR020826]"], "available_proteins": ["ACACA", "ACO1", "ACO2", "ACTN1", "ACTN4", "ADSS", "APEX1", "APOBEC3C", "CALM3", "CALU", "CAMK4", "CAPN1", "CDK1", "CDK12", "CDK2", "CDK4", "CDK5", "CDK6", "CETN2", "COX2", "COX5B", "CSK", "CSNK1A1", "CSNK2A2", "CYB5B", "DLAT", "DLST", "DST", "EHD1", "EHD4", "EIF2AK2", "FKBP10", "GCAT", "GOT1", "GOT2", "GPD2", "GSK3A", "GSK3B", "HK1", "HK2", "IDE", "ILKAP", "IQGAP1", "LETM1", "MACF1", "MAP2K1", "MAP2K2", "MAP4K4", "MAPK1", "MAPK3", "MARK2", "MCCC1", "METAP2", "MICU1", "MYH10", "MYH14", "MYH9", "MYO1B", "MYO1C", "MYO1D", "MYO5A", "NRDC", "NUCB1", "NUCB2", "PA2G4", "PAK2", "PC", "PCCA", "PDCD6", "PEF1", "PGD", "PKN2", "PLS1", "PLS3", "PMPCA", "PMPCB", "POLR2L", "PPM1F", "PPM1G", "PRKAA2", "PRKACA", "PRKCSH", "PSAT1", "RAB18", "RCN1", "RCN2", "RHOT1", "RHOT2", "ROCK1", "RPS6KA3", "S100A11", "SDHA", "SDHB", "SHMT1", "SHMT2", "SLC25A12", "SLC25A24", "SLK", "SPTAN1", "SRI", "SRPK1", "STK26", "TKT", "TUBB", "TUBB2A", "TUBB2B", "TUBB4A", "TUBB4B", "TUBB6", "UBE3C", "UQCRC2", "VRK1"], "leading_proteins": ["TUBB", "TUBB2A", "TUBB2B", "TUBB4B", "TUBB6", "UQCRC2"]}
|
interpro_conserved_site/advanced/idx2term.json
ADDED
|
@@ -0,0 +1 @@
|
|
|
|
|
|
|
| 1 |
+
{"0": "Tubulin, conserved site [IPR017975]"}
|
interpro_conserved_site/advanced/plot_0.png
ADDED
|
Git LFS Details
|
interpro_conserved_site/basic/idx2term.json
ADDED
|
@@ -0,0 +1 @@
|
|
|
|
|
|
|
| 1 |
+
{"0": "Tubulin, conserved site [IPR017975]", "1": "Proteasome beta-type subunit, conserved site [IPR016050]", "2": "14-3-3 protein, conserved site [IPR023409]"}
|
interpro_conserved_site/basic/plot_0.png
ADDED
|
Git LFS Details
|
interpro_conserved_site/basic/plot_1.png
ADDED
|
Git LFS Details
|
interpro_conserved_site/basic/plot_2.png
ADDED
|
Git LFS Details
|
interpro_conserved_site/consensus.joblib
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:7c07cdb60a225ddc92980b6128280b6718f27d2bee505bcdf49cbe4011e451c3
|
| 3 |
+
size 64348
|
interpro_conserved_site/df_merge.tsv
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
term overlap setsize score pval overlap_mean setsize_mean score_mean pval_mean overlap_std setsize_std score_std pval_std pval_hit pval_50 pval_100 pval_250 pval_500
|
| 2 |
+
Tubulin, conserved site [IPR017975] 5 6 2.5088682548478696 0.0121118647835629 3.6140776699029127 5.883495145631068 0.537603280896448 0.3771225437200781 1.6631634011190108 1.117390952728082 1.2199662970774952 0.3090115161057067 1.4467970406321997e-06 1.0 1.0 2.765770662469611e-06 0.0001461959825676
|
| 3 |
+
Intermediate filament protein, conserved site [IPR018039] 4 7 2.018142006649203 0.0435764738996147 4.060679611650485 7.546116504854369 0.7869831563787604 0.2926647109331939 1.9153715257926656 0.8924219614624045 1.3691577499316503 0.3120813432784052 0.0569887833052036 1.0 1.0 0.0693365470158766 0.0013613651941044
|
interpro_conserved_site/metrics.json
ADDED
|
@@ -0,0 +1,7 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"type_of_task": "ranksum",
|
| 3 |
+
"signature_size": 2468,
|
| 4 |
+
"annotations_size": 249,
|
| 5 |
+
"title": "Average number of proteins per term",
|
| 6 |
+
"value": 2.5461847389558234
|
| 7 |
+
}
|
interpro_conserved_site/paths.json
ADDED
|
@@ -0,0 +1 @@
|
|
|
|
|
|
|
| 1 |
+
{"results_path": "results/proteins/hek293t_core/interpro_conserved_site/fragment/C413/C413_val_log2fc"}
|
interpro_conserved_site/result.tsv
ADDED
|
@@ -0,0 +1,29 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
Term es nes pval sidak fdr geneset_size leading_edge leading_edge_size
|
| 2 |
+
Tubulin, conserved site [IPR017975] 0.9057676685621424 2.5088682548478696 0.0121118647835629 0.9518900838574916 0.4704942067499918 6 Q9BVA1,Q13885,P68371,P07437,Q9BUF5 5
|
| 3 |
+
Intermediate filament protein, conserved site [IPR018039] 0.7621730534860718 2.018142006649203 0.0435764738996147 0.9999847975936508 0.4704942067499918 7 P02545,Q16352,P08670,P48681 4
|
| 4 |
+
Proteasome beta-type subunit, conserved site [IPR016050] 0.7313843060455997 1.8607428822583392 0.0627804949852395 0.9999999026158508 0.4704942067499918 8 P49721,Q99436,P20618,P28072,P28074 5
|
| 5 |
+
Syntaxin/epimorphin, conserved site [IPR006012] 0.736225481364402 1.7853028800532629 0.0742122019697146 0.99999999541487 0.4704942067499918 6 O43752,Q9P2W9,Q86Y82,Q13190 4
|
| 6 |
+
Mini-chromosome maintenance, conserved site [IPR018525] 0.6863217168362798 1.5610642435055166 0.1185085936232723 0.9999999999999772 0.4980705947577174 6 P33991 1
|
| 7 |
+
Tetraspanin, conserved site [IPR018503] 0.9736415247364144 1.3068252485310807 0.1912720680732416 1.0 0.5879845055584835 2 O60637 1
|
| 8 |
+
ABC transporter-like, conserved site [IPR017871] 0.6110967394226849 1.285408224108433 0.1986496688213872 1.0 0.5888543754348265 9 P33527,O75027 2
|
| 9 |
+
Guanylate kinase, conserved site [IPR020590] 0.8348884381338728 1.2345069113572136 0.2170140729462351 1.0 0.6004056018179171 3 Q9NZW5,Q14168 2
|
| 10 |
+
Haem oxygenase conserved site [IPR018207] 0.9399837793998352 1.1800851279872948 0.2379663589767011 1.0 0.6460795268552815 2 P30519 1
|
| 11 |
+
Thioredoxin, conserved site [IPR017937] 0.5662326642206563 1.0725512663929766 0.2834725002807845 1.0 0.7129762885850035 9 Q9H3N1,Q9H1E5 2
|
| 12 |
+
Phosphofructokinase, conserved site [IPR015912] 0.7712723281047711 0.9846216137511538 0.324809968934904 1.0 0.7505213579159778 3 P17858 1
|
| 13 |
+
Sterol reductase, conserved site [IPR018083] 0.7708964716737601 0.9831627679110392 0.3255273359635566 1.0 0.7505213579159778 3 Q14739 1
|
| 14 |
+
Glycoside hydrolase, family 29, conserved site [IPR018526] 0.823600973236005 0.7571471606557408 0.448961702458547 1.0 0.9020463506354762 2 Q9BTY2 1
|
| 15 |
+
Mitogen-activated protein (MAP) kinase, conserved site [IPR003527] 0.7725060827250599 0.5864421507239798 0.5575784258011858 1.0 0.9641460279478836 2 P27361 1
|
| 16 |
+
Aldehyde dehydrogenase, cysteine active site [IPR016160] 0.452130164490122 0.5543997541404841 0.5793052943176928 1.0 0.9772386134894944 8 P51648 1
|
| 17 |
+
Dynamin, GTPase region, conserved site [IPR019762] 0.7169505271695051 0.4189109593271182 0.6752812073265848 1.0 1.0 2 O00429 1
|
| 18 |
+
Acyl-CoA-binding protein, ACBP, conserved site [IPR022408] 0.6125760649087131 0.4170222671700632 0.676662120622552 1.0 1.0 3 Q9H3P7,Q5T8D3 2
|
| 19 |
+
Clathrin adaptor complex, small chain [IPR000804] 0.539148073022301 0.2171167633040373 0.8281173503251578 1.0 1.0 3 Q92572,P53680 2
|
| 20 |
+
Aldehyde dehydrogenase, glutamic acid active site [IPR029510] 0.3636307179233726 0.1831681283883186 0.8546661011258934 1.0 1.0 8 P51648 1
|
| 21 |
+
14-3-3 protein, conserved site [IPR023409] 0.3379366368805875 0.0788609468873493 0.937143226328957 1.0 1.0 6 P63104,P31946,P27348,P62258,P61981 5
|
| 22 |
+
3-hydroxyacyl-CoA dehydrogenase, conserved site [IPR006180] 0.5113544201135389 0.0555208911776015 0.9557234868655532 1.0 1.0 2 Q16836 1
|
| 23 |
+
Profilin conserved site [IPR027310] 0.4521492295214864 0.0261438809506948 0.9791425770738588 1.0 1.0 2 P35080 1
|
| 24 |
+
Actin/actin-like conserved site [IPR020902] 0.3360389610389583 0.0242110203109597 0.9806842877708216 1.0 1.0 4 P61163,P61158,P42025 3
|
| 25 |
+
Ras GTPase-activating protein, conserved site [IPR023152] 0.4067315490673185 0.0164153492890525 0.9869030344375032 1.0 1.0 2 P21359 1
|
| 26 |
+
Ubiquitin interacting motif [IPR003903] 0.3884833738848371 0.014385222131607 0.9885226492023658 1.0 1.0 2 O14964 1
|
| 27 |
+
Ribosomal protein S2, conserved site [IPR018130] 0.3641524736415297 0.0127170549696883 0.9898535316685816 1.0 1.0 2 Q9Y399 1
|
| 28 |
+
Cadherin conserved site [IPR020894] 0.3874239350912673 0.0086540865069123 0.993095124176446 1.0 1.0 3 Q14126,Q14574 2
|
| 29 |
+
Heat shock protein Hsp90, conserved site [IPR019805] 0.3764705882352889 0.0032261771226133 0.9974258875487731 1.0 1.0 3 P07900,P14625 2
|
interpro_conserved_site/selections.json
ADDED
|
@@ -0,0 +1 @@
|
|
|
|
|
|
|
| 1 |
+
{"all_annotations": ["14-3-3 protein, conserved site [IPR023409]", "3-hydroxyacyl-CoA dehydrogenase, conserved site [IPR006180]", "3-hydroxyisobutyrate dehydrogenase-related, conserved site [IPR002204]", "4Fe-4S ferredoxin, iron-sulphur binding, conserved site [IPR017900]", "ABC transporter-like, conserved site [IPR017871]", "AMP-binding, conserved site [IPR020845]", "AP endonuclease 1, conserved site [IPR020848]", "AT hook, DNA-binding motif [IPR017956]", "ATP synthase, F1 complex, gamma subunit conserved site [IPR023632]", "ATP-citrate lyase/succinyl-CoA ligase, conserved site [IPR033847]", "ATP-dependent RNA helicase DEAD-box, conserved site [IPR000629]", "ATPase, AAA-type, conserved site [IPR003960]", "ATPase, OSCP/delta subunit, conserved site [IPR020781]", "Acin1, RNSP1-SAP18 binding (RSB) motif [IPR032552]", "Actin, conserved site [IPR004001]", "Actin/actin-like conserved site [IPR020902]", "Actinin-type actin-binding domain, conserved site [IPR001589]", "Acyl-CoA dehydrogenase, conserved site [IPR006089]", "Acyl-CoA-binding protein, ACBP, conserved site [IPR022408]", "Adenylate kinase, conserved site [IPR033690]", "Alanine dehydrogenase/NAD(P) transhydrogenase, conserved site-1 [IPR008142]", "Alanine dehydrogenase/pyridine nucleotide transhydrogenase, conserved site-2 [IPR008143]", "Alcohol dehydrogenase, zinc-type, conserved site [IPR002328]", "Aldehyde dehydrogenase, cysteine active site [IPR016160]", "Aldehyde dehydrogenase, glutamic acid active site [IPR029510]", "Aldo/keto reductase, conserved site [IPR018170]", "Alpha-D-phosphohexomutase, conserved site [IPR016066]", "Aminoacyl-tRNA synthetase, class I, conserved site [IPR001412]", "Anion exchange, conserved site [IPR018241]", "Annexin repeat, conserved site [IPR018252]", "Apoptosis regulator, Bcl-2, BH1 motif, conserved site [IPR020717]", "Apoptosis regulator, Bcl-2, BH2 motif, conserved site [IPR020726]", "Apoptosis regulator, Bcl-2, BH3 motif, conserved site [IPR020728]", "BUD31/G10-related, conserved site [IPR018230]", "Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p, conserved site [IPR018314]", "Band 7/stomatin-like, conserved site [IPR018080]", "Bax inhibitor 1, conserved site [IPR006213]", "Bromodomain, conserved site [IPR018359]", "C-type lectin, conserved site [IPR018378]", "CAP, conserved site, C-terminal [IPR028417]", "CAP, conserved site, N-terminal [IPR018106]", "Cadherin conserved site [IPR020894]", "Calreticulin/calnexin, conserved site [IPR018124]", "Carbohydrate/purine kinase, PfkB, conserved site [IPR002173]", "Chaperonin Cpn60, conserved site [IPR018370]", "Chaperonin GroES, conserved site [IPR018369]", "Chaperonin TCP-1, conserved site [IPR002194]", "Chromo domain, conserved site [IPR023779]", "Clathrin adaptor complex, small chain [IPR000804]", "Clathrin adaptor, mu subunit, conserved site [IPR018240]", "Coproporphyrinogen III oxidase, conserved site [IPR018375]", "Cullin, conserved site [IPR016157]", "Cyclic nucleotide-binding, conserved site [IPR018488]", "Cyclophilin-type peptidyl-prolyl cis-trans isomerase, conserved site [IPR020892]", "Cytochrome P450, conserved site [IPR017972]", "D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1 [IPR029752]", "D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site [IPR029753]", "DNA ligase, ATP-dependent, conserved site [IPR016059]", "DNA methylase, C-5 cytosine-specific, conserved site [IPR031303]", "DNA methylase, N-6 adenine-specific, conserved site [IPR002052]", "DNA topoisomerase, type IIA, conserved site [IPR018522]", "DNA-directed DNA polymerase, family B, conserved site [IPR017964]", "DNA-directed RNA polymerase, 30-40kDa subunit, conserved site [IPR001514]", "DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site [IPR002464]", "Dihydrofolate reductase conserved site [IPR017925]", "Dihydroorotase, conserved site [IPR002195]", "DnaJ domain, conserved site [IPR018253]", "Dynamin, GTPase region, conserved site [IPR019762]", "Dynein light chain, type 1/2, conserved site [IPR019763]", "EGF-like calcium-binding, conserved site [IPR018097]", "EGF-like, conserved site [IPR013032]", "Electron transfer flavoprotein subunit alpha, conserved site [IPR018206]", "Electron transfer flavoprotein, beta-subunit, conserved site [IPR000049]", "Enolase, conserved site [IPR020809]", "Enoyl-CoA hydratase/isomerase, conserved site [IPR018376]", "F-actin capping protein, alpha subunit, conserved site [IPR017865]", "F-actin capping protein, beta subunit, conserved site [IPR019771]", "FERM conserved site [IPR019747]", "FLAP/GST2/LTC4S, conserved site [IPR018295]", "Fatty acid desaturase type 1, conserved site [IPR001522]", "Fibrillarin, conserved site [IPR020813]", "Fork head domain conserved site 2 [IPR030456]", "Fork head domain conserved site1 [IPR018122]", "Formate-tetrahydrofolate ligase, FTHFS, conserved site [IPR020628]", "Fructose-bisphosphate aldolase class-I active site [IPR029768]", "Fumarate lyase, conserved site [IPR020557]", "GHMP kinase, ATP-binding, conserved site [IPR006203]", "GTP1/OBG, conserved site [IPR006074]", "Galactokinase, conserved site [IPR019741]", "Gamma-glutamyl phosphate reductase GPR, conserved site [IPR020593]", "Glucosamine-6-phosphate isomerase, conserved site [IPR018321]", "Glutamate 5-kinase, conserved site [IPR019797]", "Glycoside hydrolase family 27/36, conserved site [IPR000111]", "Glycoside hydrolase, family 29, conserved site [IPR018526]", "Glycoside hydrolase, family 35, conserved site [IPR019801]", "Glycosyl hydrolases family 31, conserved site [IPR030459]", "Glyoxalase I, conserved site [IPR018146]", "Golgin subfamily A member 2, C-terminal binding motif [IPR043937]", "Guanine-nucleotide dissociation stimulator, CDC24, conserved site [IPR001331]", "Guanylate kinase, conserved site [IPR020590]", "HIND motif [IPR045347]", "HMG box A DNA-binding domain, conserved site [IPR017967]", "HMG-I/HMG-Y, DNA-binding, conserved site [IPR000637]", "Haem oxygenase conserved site [IPR018207]", "Heat shock protein 70, conserved site [IPR018181]", "Heat shock protein Hsp90, conserved site [IPR019805]", "Heavy-metal-associated, conserved site [IPR017969]", "Helix-hairpin-helix motif, class 2 [IPR008918]", "Hexapeptide transferase, conserved site [IPR018357]", "Histidine triad, conserved site [IPR019808]", "Histone H4, conserved site [IPR019809]", "IMP dehydrogenase / GMP reductase, conserved site [IPR015875]", "Immunoglobulin/major histocompatibility complex, conserved site [IPR003006]", "Intermediate filament protein, conserved site [IPR018039]", "Isocitrate/isopropylmalate dehydrogenase, conserved site [IPR019818]", "Kinesin motor domain, conserved site [IPR019821]", "Lipocalin family conserved site [IPR022272]", "Lysosome-associated membrane glycoprotein, conserved site [IPR018134]", "Macrophage migration inhibitory factor, conserved site [IPR019829]", "Malic enzyme, conserved site [IPR015884]", "Methylthiotransferase, conserved site [IPR020612]", "Mini-chromosome maintenance, conserved site [IPR018525]", "Mitogen-activated protein (MAP) kinase, conserved site [IPR003527]", "Mrp, conserved site [IPR000808]", "Myristoyl-CoA:protein N-myristoyltransferase, conserved site [IPR022678]", "NADH:ubiquinone oxidoreductase, 30kDa subunit, conserved site [IPR020396]", "NADH:ubiquinone oxidoreductase, 49kDa subunit, conserved site [IPR014029]", "NADH:ubiquinone oxidoreductase, 51kDa subunit, conserved site [IPR001949]", "NADH:ubiquinone oxidoreductase, 75kDa subunit, conserved site [IPR000283]", "NUDIX hydrolase, conserved site [IPR020084]", "Oxysterol-binding protein, conserved site [IPR018494]", "P-type trefoil, conserved site [IPR017957]", "Peptidase M24B, X-Pro dipeptidase/aminopeptidase P, conserved site [IPR001131]", "Peptidase S26A, signal peptidase I, conserved site [IPR019758]", "Phosphatidylethanolamine-binding, conserved site [IPR001858]", "Phosphatidylinositol 3/4-kinase, conserved site [IPR018936]", "Phosphoenolpyruvate carboxykinase, GTP-utilising, conserved site [IPR018091]", "Phosphofructokinase, conserved site [IPR015912]", "Phosphoglucose isomerase, conserved site [IPR018189]", "Phosphoglycerate kinase, conserved site [IPR015911]", "Phosphomannose isomerase, type I, conserved site [IPR018050]", "Phosphoribosyl pyrophosphate synthetase, conserved site [IPR000842]", "Phosphoribosylglycinamide synthetase, conserved site [IPR020559]", "Phosphorylase pyridoxal-phosphate attachment site [IPR035090]", "Polyamine biosynthesis domain, conserved site [IPR030373]", "Polyprenyl synthetase, conserved site [IPR033749]", "Procollagen-lysine 5-dioxygenase, conserved site [IPR001006]", "Profilin conserved site [IPR027310]", "Proliferating cell nuclear antigen, PCNA, conserved site [IPR022659]", "Proteasome beta-type subunit, conserved site [IPR016050]", "Protein phosphatase 2A regulatory subunit PR55, conserved site [IPR018067]", "Proteinase inhibitor I25, cystatin, conserved site [IPR018073]", "Purine phosphorylase, family 2, conserved site [IPR018099]", "Quinone oxidoreductase/zeta-crystallin, conserved site [IPR002364]", "RNA 3'-terminal phosphate cyclase-like, conserved site [IPR020719]", "RNA polymerase, beta subunit, conserved site [IPR007121]", "RNA polymerase, subunit H/Rpb5, conserved site [IPR020608]", "Ras GTPase-activating protein, conserved site [IPR023152]", "Retro-transposon transporting motif [IPR018892]", "Ribonuclease II/R, conserved site [IPR022966]", "Ribosomal S11, conserved site [IPR018102]", "Ribosomal S24e conserved site [IPR018098]", "Ribosomal protein L1, conserved site [IPR023673]", "Ribosomal protein L10e, conserved site [IPR018255]", "Ribosomal protein L11, conserved site [IPR020785]", "Ribosomal protein L13, conserved site [IPR023563]", "Ribosomal protein L13e, conserved site [IPR018256]", "Ribosomal protein L14P, conserved site [IPR019972]", "Ribosomal protein L15, conserved site [IPR001196]", "Ribosomal protein L15e, conserved site [IPR020925]", "Ribosomal protein L18e, conserved site [IPR021132]", "Ribosomal protein L19/L19e conserved site [IPR023638]", "Ribosomal protein L2, conserved site [IPR022671]", "Ribosomal protein L21e, conserved site [IPR018259]", "Ribosomal protein L22/L17, conserved site [IPR018260]", "Ribosomal protein L23/L25, conserved site [IPR001014]", "Ribosomal protein L24/L26, conserved site [IPR005825]", "Ribosomal protein L24e, conserved site [IPR023442]", "Ribosomal protein L27e, conserved site [IPR018262]", "Ribosomal protein L29, conserved site [IPR018254]", "Ribosomal protein L3, conserved site [IPR019926]", "Ribosomal protein L30, conserved site [IPR018038]", "Ribosomal protein L30e, conserved site [IPR022991]", "Ribosomal protein L31e, conserved site [IPR020052]", "Ribosomal protein L32e, conserved site [IPR018263]", "Ribosomal protein L34e, conserved site [IPR018065]", "Ribosomal protein L35Ae, conserved site [IPR018266]", "Ribosomal protein L37e, conserved site [IPR018267]", "Ribosomal protein L4/L1e, eukaryotic/archaeal, conserved site [IPR013000]", "Ribosomal protein L5, conserved site [IPR020929]", "Ribosomal protein L6, conserved site-2 [IPR002359]", "Ribosomal protein L7Ae conserved site [IPR004037]", "Ribosomal protein S10, conserved site [IPR018268]", "Ribosomal protein S13, conserved site [IPR018269]", "Ribosomal protein S17, conserved site [IPR019979]", "Ribosomal protein S17e, conserved site [IPR018273]", "Ribosomal protein S19e, conserved site [IPR018277]", "Ribosomal protein S2, conserved site [IPR018130]", "Ribosomal protein S28e conserved site [IPR028626]", "Ribosomal protein S3, conserved site [IPR018280]", "Ribosomal protein S3Ae, conserved site [IPR018281]", "Ribosomal protein S4, conserved site [IPR018079]", "Ribosomal protein S4e, N-terminal, conserved site [IPR018199]", "Ribosomal protein S5, N-terminal, conserved site [IPR018192]", "Ribosomal protein S6e, conserved site [IPR018282]", "Ribosomal protein S7, conserved site [IPR020606]", "Ribosomal protein S8e, conserved site [IPR018283]", "Ribosomal protein S9, conserved site [IPR020574]", "Ribosome maturation protein SBDS, conserved site [IPR018023]", "S-adenosyl-L-homocysteine hydrolase, conserved site [IPR020082]", "S-adenosylmethionine synthetase, conserved site [IPR022631]", "S100/Calbindin-D9k, conserved site [IPR001751]", "SAICAR synthetase, conserved site [IPR018236]", "SecY conserved site [IPR030659]", "Serpin, conserved site [IPR023795]", "Short-chain dehydrogenase/reductase, conserved site [IPR020904]", "Sodium/solute symporter, conserved site [IPR018212]", "Sodium:dicarboxylate symporter, conserved site [IPR018107]", "Squalene/phytoene synthase, conserved site [IPR019845]", "Stathmin, conserved site [IPR030514]", "Sterol reductase, conserved site [IPR018083]", "Succinyl-CoA synthetase, beta subunit, conserved site [IPR017866]", "Sugar transporter, conserved site [IPR005829]", "Sulfatase, conserved site [IPR024607]", "Syntaxin/epimorphin, conserved site [IPR006012]", "TPP-binding enzyme, conserved site [IPR000399]", "Terpene synthase, conserved site [IPR002365]", "Tetrahydrofolate dehydrogenase/cyclohydrolase, conserved site [IPR020867]", "Tetraspanin, conserved site [IPR018503]", "Thiolase, conserved site [IPR020613]", "Thioredoxin, conserved site [IPR017937]", "Thymidine kinase, conserved site [IPR020633]", "Thymidylate kinase, conserved site [IPR018095]", "Tr-type G domain, conserved site [IPR031157]", "Translation elongation factor EF1B, beta/delta chains, conserved site [IPR001326]", "Translation elongation factor Ts, conserved site [IPR018101]", "Translationally controlled tumour protein, conserved site [IPR018103]", "Tubulin, conserved site [IPR017975]", "UbiE/COQ5 methyltransferase, conserved site [IPR023576]", "Ubiquitin conserved site [IPR019954]", "Ubiquitin interacting motif [IPR003903]", "Ubiquitin specific protease, conserved site [IPR018200]", "Ubiquitin-activating enzyme E1, conserved site [IPR018074]", "Vinculin, conserved site [IPR000633]", "WD40 repeat, conserved site [IPR019775]", "XPG conserved site [IPR019974]", "YgfZ/GcvT conserved site [IPR017703]", "Zinc finger, PHD-type, conserved site [IPR019786]", "Zinc finger, RING-type, conserved site [IPR017907]"], "available_proteins": ["AAAS", "ABCB1", "ABCB7", "ABCC1", "ABCD3", "ABCE1", "ABCF1", "ABCF2", "ABCF3", "ACAA2", "ACAD9", "ACADM", "ACADVL", "ACAT1", "ACAT2", "ACBD3", "ACBD5", "ACIN1", "ACLY", "ACSL1", "ACSL3", "ACSL4", "ACTL6A", "ACTN1", "ACTN4", "ACTR1A", "ACTR1B", "ACTR2", "ACTR3", "ADH5", "ADK", "ADSL", "AFG3L2", "AHCY", "AHCYL1", "AK2", "AKR1A1", "AKR1B1", "ALDH18A1", "ALDH1A2", "ALDH1B1", "ALDH2", "ALDH3A2", "ALDH4A1", "ALDH5A1", "ALDH6A1", "ALDH7A1", "ALDH9A1", "ALDOA", "ALDOC", "ANXA1", "ANXA11", "ANXA2", "ANXA4", "ANXA6", "ANXA7", "AP1M1", "AP2M1", "AP2S1", "AP3M1", "AP3S1", "APEX1", "ARHGEF7", "ARIH2", "ATAD1", "ATP5C1", "ATP5O", "ATP7B", "BAG6", "BAK1", "BAZ1A", "BAZ1B", "BAZ2A", "BLM", "BOP1", "BPTF", "BRD2", "BUD31", "CAD", "CALR", "CANX", "CAP1", "CAPZA1", "CAPZA2", "CAPZB", "CBL", "CBR1", "CBX1", "CBX3", "CBX5", "CCT2", "CCT3", "CCT4", "CCT5", "CCT6A", "CCT7", "CCT8", "CDC40", "CDH2", "CDKAL1", "CETN2", "CHAF1B", "CHD1", "CHD4", "CMPK1", "COLEC12", "COPA", "COPZ1", "CORO1B", "CORO1C", "CPOX", "CSTB", "CSTF1", "CTBP2", "CTNNA1", "CUL1", "CUL2", "CUL3", "CUL4B", "CUL5", "CYP51A1", "DCAF13", "DCAF7", "DCPS", "DCXR", "DDX10", "DDX17", "DDX18", "DDX20", "DDX23", "DDX24", "DDX27", "DDX3X", "DDX42", "DDX46", "DDX47", "DDX49", "DDX5", "DDX51", "DDX54", "DDX55", "DDX6", "DHCR7", "DHFR", "DHRS7B", "DHX15", "DHX16", "DHX29", "DHX30", "DHX33", "DHX36", "DHX38", "DHX40", "DHX8", "DHX9", "DIDO1", "DIS3", "DNAJA1", "DNAJA3", "DNAJB1", "DNAJC1", "DNAJC10", "DNAJC11", "DNAJC9", "DNM1L", "DNM2", "DNMT1", "DRG1", "DRG2", "DSC3", "DSG2", "DST", "DTYMK", "DYNLL1", "DYNLL2", "EARS2", "ECH1", "ECHDC1", "ECHS1", "ECI1", "ECI2", "EEF1A2", "EEF1B2", "EEF1D", "EEF2", "EIF3I", "EIF4A1", "EIF4A2", "EIF4A3", "ENO1", "ENO2", "EPB41", "EPB41L2", "EPB41L3", "EPRS", "ERCC2", "ETFA", "ETFB", "EXO1", "EZR", "FBL", "FDFT1", "FDPS", "FEN1", "FLNA", "FLNB", "FLNC", "FOXC1", "FUCA1", "FUCA2", "GAA", "GALK1", "GANAB", "GART", "GCDH", "GEMIN5", "GFM1", "GLA", "GLB1", "GLO1", "GMPPB", "GNPDA1", "GNS", "GOLGA2", "GPI", "GRHPR", "GRWD1", "GSPT1", "GTF3C2", "H4C1*", "HADH", "HADHA", "HADHB", "HGS", "HIBADH", "HINT2", "HLA-A", "HLTF", "HMGA1", "HMGB1", "HMGB2", "HMGB3", "HMOX1", "HMOX2", "HSD17B10", "HSD17B12", "HSD17B4", "HSDL2", "HSP90AA1", "HSP90AB1", "HSP90B1", "HSPA13", "HSPA1B", "HSPA4", "HSPA4L", "HSPA8", "HSPA9", "HSPD1", "HSPE1", "HSPH1", "HYOU1", "IARS", "IARS2", "IBA57", "IDH1", "IDH2", "IDH3A", "IDH3B", "IDH3G", "ILVBL", "IMPDH2", "INA", "INTS12", "IQGAP1", "IVD", "KDM2A", "KDM5A", "KDSR", "KIF11", "KIF1A", "KIF20A", "KIF22", "KIF23", "KIF2A", "KIF2C", "KIF4A", "KIF5B", "LAMP1", "LARS", "LARS2", "LBR", "LIG3", "LMNA", "LMNB1", "LMNB2", "LSS", "MACF1", "MAPK1", "MAPK3", "MARS", "MAT2A", "MCM2", "MCM3", "MCM4", "MCM5", "MCM6", "MCM7", "ME2", "MGST2", "MID1", "MIF", "MPHOSPH8", "MPI", "MPP1", "MPP2", "MPP6", "MRPL3", "MRPS2", "MRPS5", "MRPS9", "MSN", "MTAP", "MTHFD1", "MTHFD1L", "MTOR", "NDUFS1", "NDUFS2", "NDUFS3", "NDUFV1", "NEFM", "NES", "NF1", "NKTR", "NLE1", "NMT1", "NNT", "NOP2", "NSD2", "NSF", "NUBP2", "NUDT1", "NUDT12", "NUDT5", "NUP153", "NUP37", "NUP43", "NVL", "OSBP", "OSBPL11", "OSBPL8", "OSBPL9", "P4HB", "PAFAH1B1", "PAICS", "PAK1IP1", "PBRM1", "PCK2", "PCNA", "PDIA3", "PDIA4", "PDIA6", "PEBP1", "PEPD", "PFKL", "PFKM", "PFKP", "PFN1", "PFN2", "PGK1", "PGM1", "PGM2", "PHF2", "PHF3", "PHGDH", "PHIP", "PI4KB", "PLEC", "PLOD1", "PLOD2", "PLRG1", "PLS1", "PLS3", "PNP", "POLA1", "POLD1", "POLR1B", "POLR1C", "POLR2B", "POLR2E", "PPIB", "PPID", "PPIF", "PPIL1", "PPIL2", "PPP2R2A", "PRKAR1A", "PRKAR2A", "PRKDC", "PRPF19", "PRPF4", "PRPS2", "PSMA4", "PSMB1", "PSMB2", "PSMB3", "PSMB4", "PSMB5", "PSMB6", "PSMB7", "PSMC1", "PSMC2", "PSMC3", "PSMC4", "PSMC5", "PSMC6", "PSMD4", "PWP2", "PYGB", "PYGL", "QARS", "RACK1", "RAE1", "RANBP2", "RARS", "RBBP4", "RCL1", "RDH13", "RDX", "RNF2", "RNF20", "RNF40", "RPL10", "RPL10A", "RPL11", "RPL12", "RPL13", "RPL13A", "RPL15", "RPL17", "RPL18", "RPL19", "RPL21", "RPL23", "RPL23A", "RPL24", "RPL26", "RPL27", "RPL27A", "RPL3", "RPL30", "RPL31", "RPL32", "RPL34", "RPL35", "RPL35A", "RPL37", "RPL4", "RPL7", "RPL7A", "RPL7L1", "RPL8", "RPL9", "RPS11", "RPS14", "RPS16", "RPS17", "RPS18", "RPS19", "RPS2", "RPS20", "RPS24", "RPS28", "RPS3", "RPS3A", "RPS4X", "RPS5", "RPS6", "RPS8", "RPS9", "RPSA", "RRP8", "RRP9", "RSF1", "RSL24D1", "S100A11", "SART1", "SBDS", "SCAF11", "SCD", "SCP2", "SDHB", "SEC11A", "SEC61A1", "SERPINH1", "SLC1A5", "SLC27A4", "SLC2A1", "SLC4A2", "SLC5A6", "SLIT2", "SMARCA4", "SMS", "SMU1", "SNRNP40", "SNU13", "SPTBN1", "SPTBN2", "SRCAP", "SRM", "STMN1", "STOM", "STX12", "STX18", "STX4", "STX5", "STX6", "STX7", "SUCLA2", "SUCLG1", "SUCLG2", "SV2A", "SYNE2", "TAP2", "TBL1XR1", "TBL3", "TCP1", "THOC6", "TK1", "TLN1", "TM7SF2", "TMBIM6", "TMX1", "TMX3", "TMX4", "TOP2A", "TOP2B", "TPT1", "TRIM21", "TRIM24", "TRIM25", "TRIM28", "TRIM33", "TRIP13", "TRMT11", "TSFM", "TSPAN3", "TSPAN6", "TUBB", "TUBB2A", "TUBB2B", "TUBB4A", "TUBB4B", "TUBB6", "TUFM", "TXNDC5", "UBA1", "UBA2", "UHRF1", "USP10", "USP14", "USP24", "USP48", "USP5", "USP7", "USP9X", "UTP15", "UTP18", "UTRN", "VARS1", "VARS2", "VAT1", "VCL", "VCP", "VIM", "VPS4A", "VPS4B", "WARS", "WARS2", "WDHD1", "WDR1", "WDR11", "WDR18", "WDR3", "WDR36", "WDR5", "WDR61", "WDR77", "XPNPEP1", "YARS2", "YME1L1", "YWHAB", "YWHAE", "YWHAG", "YWHAH", "YWHAQ", "YWHAZ", "ZADH2"], "leading_proteins": ["ABCB7", "ABCC1", "ACBD3", "ACBD5", "ACTR1A", "ACTR1B", "ACTR3", "ALDH3A2", "AP2S1", "AP3S1", "DNM1L", "DSC3", "DSG2", "FUCA2", "HADH", "HGS", "HMOX2", "HSP90AA1", "HSP90B1", "INA", "LBR", "LMNA", "MAPK3", "MCM4", "MPP2", "MPP6", "MRPS2", "NES", "NF1", "PFKL", "PFN2", "PSMB1", "PSMB2", "PSMB5", "PSMB6", "PSMB7", "STX12", "STX18", "STX5", "STX6", "TMX1", "TMX4", "TSPAN3", "TUBB", "TUBB2A", "TUBB2B", "TUBB4B", "TUBB6", "VIM", "YWHAB", "YWHAE", "YWHAG", "YWHAQ", "YWHAZ"]}
|
interpro_domain/advanced/idx2term.json
ADDED
|
@@ -0,0 +1 @@
|
|
|
|
|
|
|
| 1 |
+
{"0": "Tubulin/FtsZ, 2-layer sandwich domain [IPR018316]", "1": "Tubulin/FtsZ, GTPase domain [IPR003008]", "2": "P-type ATPase, haloacid dehalogenase domain [IPR044492]"}
|
interpro_domain/advanced/plot_0.png
ADDED
|
Git LFS Details
|
interpro_domain/advanced/plot_1.png
ADDED
|
Git LFS Details
|
interpro_domain/advanced/plot_2.png
ADDED
|
Git LFS Details
|
interpro_domain/basic/idx2term.json
ADDED
|
@@ -0,0 +1 @@
|
|
|
|
|
|
|
| 1 |
+
{"0": "Tubulin/FtsZ, 2-layer sandwich domain [IPR018316]", "1": "Tubulin/FtsZ, GTPase domain [IPR003008]", "2": "P-type ATPase, haloacid dehalogenase domain [IPR044492]", "3": "PDZ domain [IPR001478]", "4": "K Homology domain, type 1 [IPR004088]", "5": "14-3-3 domain [IPR023410]"}
|
interpro_domain/basic/plot_0.png
ADDED
|
Git LFS Details
|
interpro_domain/basic/plot_1.png
ADDED
|
Git LFS Details
|
interpro_domain/basic/plot_2.png
ADDED
|
Git LFS Details
|
interpro_domain/basic/plot_3.png
ADDED
|
Git LFS Details
|
interpro_domain/basic/plot_4.png
ADDED
|
Git LFS Details
|
interpro_domain/basic/plot_5.png
ADDED
|
Git LFS Details
|
interpro_domain/consensus.joblib
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:c47cb779a07667a7dace1cb8ef09c2fbbdc609f69715f5bdd6c6cbcad3848c87
|
| 3 |
+
size 123146
|
interpro_domain/df_merge.tsv
ADDED
|
@@ -0,0 +1,8 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
term overlap setsize score pval overlap_mean setsize_mean score_mean pval_mean overlap_std setsize_std score_std pval_std pval_hit pval_50 pval_100 pval_250 pval_500
|
| 2 |
+
Tubulin/FtsZ, 2-layer sandwich domain [IPR018316] 5 6 2.5088682548478696 0.0121118647835629 3.6140776699029127 5.883495145631068 0.537603280896448 0.3771225437200781 1.6631634011190108 1.117390952728082 1.2199662970774952 0.3090115161057067 9.822353481558534e-07 1.0 1.0 1.8818469985730976e-06 0.0001016217979366
|
| 3 |
+
Tubulin/FtsZ, GTPase domain [IPR003008] 5 6 2.5088682548478696 0.0121118647835629 3.6140776699029127 5.883495145631068 0.537603280896448 0.3771225437200781 1.6631634011190108 1.117390952728082 1.2199662970774952 0.3090115161057067 1.4467970406321997e-06 1.0 1.0 2.765770662469611e-06 0.0001461959825676
|
| 4 |
+
GOLD domain [IPR009038] 2 7 2.450932226773726 0.0142486778549772 2.8762135922330097 6.247572815533981 0.4192390492462461 0.3068843884052658 1.4199402534298398 0.930533270242389 1.3963570929114475 0.294203492723015 0.0311737062966536 0.0619434524836269 0.0066572828402184 0.003355333516566 0.0228394808772788
|
| 5 |
+
Cytochrome b5-like heme/steroid binding domain [IPR001199] 2 6 2.3254012510786986 0.0200505146526808 2.813106796116505 6.104368932038835 1.6405397264547834 0.1100883340733615 1.2852875686886795 0.8042848477475721 1.100790504333474 0.1612592696854457 0.0019123837561572 0.0015075035399645 0.0001778916397324 0.00262770885776 0.000160552482799
|
| 6 |
+
P-type ATPase, haloacid dehalogenase domain [IPR044492] 6 7 2.0989192024931533 0.0358240238048703 2.941747572815534 6.145631067961165 0.9567723497044874 0.2732808833570771 1.8358630293390923 1.459204245106796 1.2102525517005158 0.2943240638910574 0.0114139717359059 1.0 0.191600110602388 0.0153906222854723 0.0004973671187583
|
| 7 |
+
Intermediate filament, rod domain [IPR039008] 4 7 2.018142006649203 0.0435764738996147 4.060679611650485 7.546116504854369 0.7869831563787604 0.2926647109331939 1.9153715257926656 0.8924219614624045 1.3691577499316503 0.3120813432784052 0.0813655366945302 1.0 1.0 0.0983610682747182 0.0035606647558243
|
| 8 |
+
ABC transporter type 1, transmembrane domain [IPR011527] 2 5 1.9990243614660257 0.0456057180661624 2.3689320388349513 6.349514563106796 0.6640264147492347 0.3307390797434538 1.7803691733569 2.1393617497725477 1.1694677427725269 0.279101120079799 0.0037697619939986 0.0711332726649859 0.1349531130589082 0.0051503840765812 0.0338099842169397
|
interpro_domain/metrics.json
ADDED
|
@@ -0,0 +1,7 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"type_of_task": "ranksum",
|
| 3 |
+
"signature_size": 2468,
|
| 4 |
+
"annotations_size": 2206,
|
| 5 |
+
"title": "Average number of proteins per term",
|
| 6 |
+
"value": 2.048050770625567
|
| 7 |
+
}
|
interpro_domain/paths.json
ADDED
|
@@ -0,0 +1 @@
|
|
|
|
|
|
|
| 1 |
+
{"results_path": "results/proteins/hek293t_core/interpro_domain/fragment/C413/C413_val_log2fc"}
|
interpro_domain/result.tsv
ADDED
|
@@ -0,0 +1,165 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
Term es nes pval sidak fdr geneset_size leading_edge leading_edge_size
|
| 2 |
+
Tubulin/FtsZ, 2-layer sandwich domain [IPR018316] 0.9057676685621424 2.5088682548478696 0.0121118647835629 0.9999999999978848 0.59270955545224 6 Q9BVA1,Q13885,P68371,P07437,Q9BUF5 5
|
| 3 |
+
Tubulin/FtsZ, GTPase domain [IPR003008] 0.9057676685621424 2.5088682548478696 0.0121118647835629 0.9999999999978848 0.59270955545224 6 Q9BVA1,Q13885,P68371,P07437,Q9BUF5 5
|
| 4 |
+
GOLD domain [IPR009038] 0.8629923701805394 2.450932226773726 0.0142486778549772 0.9999999999999822 0.59270955545224 7 Q9Y3B3,Q15363 2
|
| 5 |
+
Cytochrome b5-like heme/steroid binding domain [IPR001199] 0.8613928420849606 2.3254012510786986 0.0200505146526808 1.0 0.59270955545224 6 O15173,O43169 2
|
| 6 |
+
P-type ATPase, haloacid dehalogenase domain [IPR044492] 0.7805770012190212 2.0989192024931533 0.0358240238048703 1.0 0.59270955545224 7 P35670,P98194,P05023,P16615,P23634,Q9HD20 6
|
| 7 |
+
Intermediate filament, rod domain [IPR039008] 0.7621730534860718 2.018142006649203 0.0435764738996147 1.0 0.59270955545224 7 P02545,Q16352,P08670,P48681 4
|
| 8 |
+
ABC transporter type 1, transmembrane domain [IPR011527] 0.8329297511760333 1.9990243614660257 0.0456057180661624 1.0 0.59270955545224 5 P33527,O75027 2
|
| 9 |
+
Major facilitator superfamily domain [IPR020846] 0.8200509579470134 1.94470346840895 0.0518106778667606 1.0 0.59270955545224 5 P53985,Q6NT16,Q7L0J3 3
|
| 10 |
+
Peptidase M16, C-terminal [IPR007863] 0.7334227651841688 1.8903637099564752 0.0587093334341399 1.0 0.59270955545224 7 P22695,Q5JRX3 2
|
| 11 |
+
Peptidase M16, N-terminal [IPR011765] 0.7334227651841688 1.8903637099564752 0.0587093334341399 1.0 0.59270955545224 7 P22695,Q5JRX3 2
|
| 12 |
+
Cation-transporting P-type ATPase, N-terminal [IPR004014] 0.7799431587494858 1.7736678542309343 0.0761181066585003 1.0 0.59270955545224 5 P98194,P16615,P05023,P23634 4
|
| 13 |
+
Cation-transporting P-type ATPase, C-terminal [IPR006068] 0.7799431587494858 1.7736678542309343 0.0761181066585003 1.0 0.59270955545224 5 P98194,P16615,P05023,P23634 4
|
| 14 |
+
Dynamin-type guanine nucleotide-binding (G) domain [IPR030381] 0.7069938378940381 1.654514723914806 0.098022974184867 1.0 0.6125741672855998 6 O95140,O00429,Q9H4M9,O60313 4
|
| 15 |
+
Dynamin, N-terminal [IPR045063] 0.7069938378940381 1.654514723914806 0.098022974184867 1.0 0.6125741672855998 6 O95140,O00429,Q9H4M9,O60313 4
|
| 16 |
+
ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain [IPR004100] 0.7831456535126627 1.5961153281635694 0.1104630470564731 1.0 0.6257267518604803 4 P25705 1
|
| 17 |
+
ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain [IPR000194] 0.7831456535126627 1.5961153281635694 0.1104630470564731 1.0 0.6257267518604803 4 P25705 1
|
| 18 |
+
MCM OB domain [IPR033762] 0.6863217168362798 1.5610642435055166 0.1185085936232723 1.0 0.6257267518604803 6 P33991 1
|
| 19 |
+
MCM domain [IPR001208] 0.6863217168362798 1.5610642435055166 0.1185085936232723 1.0 0.6257267518604803 6 P33991 1
|
| 20 |
+
MCM N-terminal domain [IPR027925] 0.6863217168362798 1.5610642435055166 0.1185085936232723 1.0 0.6257267518604803 6 P33991 1
|
| 21 |
+
MCM, AAA-lid domain [IPR041562] 0.6863217168362798 1.5610642435055166 0.1185085936232723 1.0 0.6257267518604803 6 P33991 1
|
| 22 |
+
Guanylate kinase/L-type calcium channel beta subunit [IPR008145] 0.7402475169157053 1.414681714271674 0.1571618380952206 1.0 0.672326372574249 4 Q9NZW5,Q14168 2
|
| 23 |
+
Guanylate kinase-like domain [IPR008144] 0.7402475169157053 1.414681714271674 0.1571618380952206 1.0 0.672326372574249 4 Q9NZW5,Q14168 2
|
| 24 |
+
LEM domain [IPR003887] 0.6449205733548123 1.3718111475519177 0.1701222360699839 1.0 0.683738789465237 6 P50402,Q86XL3 2
|
| 25 |
+
Aminopeptidase N-like , N-terminal domain [IPR045357] 0.6873976784103513 1.369702666174285 0.1707797360952108 1.0 0.683738789465237 5 Q9UIQ6 1
|
| 26 |
+
Peptidase M1, membrane alanine aminopeptidase [IPR014782] 0.6873976784103513 1.369702666174285 0.1707797360952108 1.0 0.683738789465237 5 Q9UIQ6 1
|
| 27 |
+
Zinc finger, CHHC-type [IPR012996] 0.859229208924948 1.3310146834286958 0.183184179523405 1.0 0.6972141793151274 3 P55795,P52597 2
|
| 28 |
+
ABC transporter-like, ATP-binding domain [IPR003439] 0.6110967394226849 1.285408224108433 0.1986496688213872 1.0 0.7034047663242059 9 P33527,O75027 2
|
| 29 |
+
Intermediate filament head, DNA-binding domain [IPR006821] 0.8397565922920855 1.2537887490169637 0.2099187997026728 1.0 0.7080747280490768 3 Q16352,P08670 2
|
| 30 |
+
C2 domain [IPR000008] 0.6185105133715398 1.2499181625347398 0.2113294439391757 1.0 0.7095780111565018 6 Q9BSJ8,Q86YQ8 2
|
| 31 |
+
Reticulon [IPR003388] 0.957015409570153 1.2440947601666674 0.2134646893028933 1.0 0.712696957599466 2 O95197 1
|
| 32 |
+
Rpn11/EIF3F, C-terminal [IPR024969] 0.6923089511269485 1.2106948786734075 0.2260123659139012 1.0 0.7304352623418305 4 Q7L5N1 1
|
| 33 |
+
Proteasome activator PA28, N-terminal domain [IPR003185] 0.8249709048058382 1.1952698334074634 0.2319816219959771 1.0 0.7320529566602012 3 P61289 1
|
| 34 |
+
Proteasome activator PA28, C-terminal domain [IPR003186] 0.8249709048058382 1.1952698334074634 0.2319816219959771 1.0 0.7320529566602012 3 P61289 1
|
| 35 |
+
ERAP1-like C-terminal domain [IPR024571] 0.8121703853955329 1.144739021842342 0.2523172817595829 1.0 0.7320529566602012 3 P55786,Q9UIQ6 2
|
| 36 |
+
NOPS [IPR012975] 0.8097363083164275 1.135147668719025 0.2563134515751732 1.0 0.735812669166204 3 Q8WXF1,Q15233 2
|
| 37 |
+
Band 7 domain [IPR001107] 0.5636033513809082 1.100502690830791 0.271113157863009 1.0 0.7466612062993732 7 Q99623,Q9UJZ1,P27105 3
|
| 38 |
+
Zinc finger, RanBP2-type [IPR001876] 0.5648608985822872 1.0861776049907146 0.2774004233306411 1.0 0.7563315076306301 8 P35637,Q92804,Q01844 3
|
| 39 |
+
Prolyl 4-hydroxylase, alpha subunit [IPR006620] 0.6494539262245054 1.0286744399508765 0.3036326847547714 1.0 0.7831238114729435 4 P13674 1
|
| 40 |
+
Oxoglutarate/iron-dependent dioxygenase [IPR005123] 0.6494539262245054 1.0286744399508765 0.3036326847547714 1.0 0.7831238114729435 4 P13674 1
|
| 41 |
+
RNA recognition motif domain, eukaryote [IPR003954] 0.5600269501650651 1.0230575283434271 0.3062806464815533 1.0 0.7831238114729435 10 Q9UHX1 1
|
| 42 |
+
Phosphofructokinase domain [IPR000023] 0.7712723281047711 0.9846216137511538 0.324809968934904 1.0 0.8050907769330317 3 P17858 1
|
| 43 |
+
Peptidase M28 [IPR007484] 0.76174784961356 0.9477434399054616 0.3432600805785579 1.0 0.8184959312675782 3 Q969V3 1
|
| 44 |
+
Beta-hexosaminidase, eukaryotic type, N-terminal [IPR029019] 0.8771289537712861 0.9475117570970392 0.3433780680973024 1.0 0.8184959312675782 2 P06865 1
|
| 45 |
+
Glycoside hydrolase family 20, catalytic domain [IPR015883] 0.8771289537712861 0.9475117570970392 0.3433780680973024 1.0 0.8184959312675782 2 P06865 1
|
| 46 |
+
FAD-binding domain, PCMH-type [IPR016166] 0.8657745336577415 0.9063854803742613 0.3647318552364662 1.0 0.846055176289847 2 Q15392 1
|
| 47 |
+
FAD linked oxidase, N-terminal [IPR006094] 0.8657745336577415 0.9063854803742613 0.3647318552364662 1.0 0.846055176289847 2 Q15392 1
|
| 48 |
+
Phox homology [IPR001683] 0.6193597478825811 0.9021067397689964 0.3670001689765323 1.0 0.8466289779198418 4 O60749 1
|
| 49 |
+
L27 domain, C-terminal [IPR014775] 0.8592862935928628 0.8830451117159744 0.3772118982616417 1.0 0.849554653450766 2 Q9NZW5 1
|
| 50 |
+
L27 domain [IPR004172] 0.8592862935928628 0.8830451117159744 0.3772118982616417 1.0 0.849554653450766 2 Q9NZW5 1
|
| 51 |
+
FAD/NAD(P)-binding domain [IPR023753] 0.5705688675734422 0.8529912236410028 0.3936641711636479 1.0 0.8701634885641356 5 P00390,O95831 2
|
| 52 |
+
MHC class I-like antigen recognition-like [IPR011161] 0.8459042984590426 0.8353128923932441 0.4035415603311298 1.0 0.876193584734717 2 P04439 1
|
| 53 |
+
MHC class I, alpha chain, C-terminal [IPR010579] 0.8459042984590426 0.8353128923932441 0.4035415603311298 1.0 0.876193584734717 2 P04439 1
|
| 54 |
+
MHC class I alpha chain, alpha1 alpha2 domains [IPR001039] 0.8459042984590426 0.8353128923932441 0.4035415603311298 1.0 0.876193584734717 2 P04439 1
|
| 55 |
+
Immunoglobulin C1-set [IPR003597] 0.8459042984590426 0.8353128923932441 0.4035415603311298 1.0 0.876193584734717 2 P04439 1
|
| 56 |
+
Glycosyl transferase, family 1 [IPR001296] 0.837388483373882 0.8052496440566755 0.4206756339176407 1.0 0.8871992814744889 2 Q2TAA5 1
|
| 57 |
+
Dynamin, GTPase domain [IPR001401] 0.7172413793103394 0.7785579135580306 0.4362401790342916 1.0 0.9006057558085186 3 O00429,O60313 2
|
| 58 |
+
RBM3/CIRBP, RNA recognition motif [IPR034278] 0.8292781832927791 0.7768643822691337 0.4372387871581702 1.0 0.9006057558085186 2 Q14011 1
|
| 59 |
+
ATPase family AAA domain-containing protein 3, N-terminal [IPR021911] 0.8240064882400624 0.7585512113529508 0.4481210674144515 1.0 0.9093014715776172 2 Q9NVI7 1
|
| 60 |
+
Alpha-L-fucosidase, C-terminal [IPR031919] 0.823600973236005 0.7571471606557408 0.448961702458547 1.0 0.9093014715776172 2 Q9BTY2 1
|
| 61 |
+
Fatty acid desaturase domain [IPR005804] 0.8191403081913963 0.7417477340809953 0.4582401927679471 1.0 0.9143865741229628 2 O15121 1
|
| 62 |
+
Complex 1 LYR protein domain [IPR008011] 0.8183292781832854 0.738956866574617 0.4599331895765446 1.0 0.915715357586514 2 Q9Y6M9 1
|
| 63 |
+
CARG-binding factor, N-terminal [IPR012956] 0.8130575831305766 0.720885894928604 0.4709797218073843 1.0 0.9203804020051216 2 Q14103 1
|
| 64 |
+
Far upstream element-binding protein, C-terminal [IPR015096] 0.8126520681265204 0.7195009093044071 0.4718323421636698 1.0 0.9203804020051216 2 Q92945 1
|
| 65 |
+
Immunoglobulin-like domain [IPR007110] 0.4849365434609529 0.7063231300322466 0.4799872125154709 1.0 0.923148902187558 8 P35613,P04439 2
|
| 66 |
+
EF-hand, Ca insensitive [IPR014837] 0.6945233265720019 0.6948646625436727 0.4871401201301659 1.0 0.9280061355847548 3 Q13813,O43707 2
|
| 67 |
+
Prolyl 4-hydroxylase alpha subunit, Fe(2+) 2OG dioxygenase domain [IPR044862] 0.8045417680454128 0.691959522512014 0.4889627489994308 1.0 0.9290713387534404 2 P13674 1
|
| 68 |
+
Lamin tail domain [IPR001322] 0.6864097363083086 0.665533051477428 0.5057096109082746 1.0 0.9390664601748504 3 P02545,Q03252 2
|
| 69 |
+
TRAM/LAG1/CLN8 homology domain [IPR006634] 0.6839756592292014 0.6567970404316691 0.511311427474185 1.0 0.9390664601748504 3 Q96G23,Q15629 2
|
| 70 |
+
Fibronectin type II domain [IPR000562] 0.7935928629359259 0.6552817061700877 0.5122863968796649 1.0 0.9390664601748504 2 Q9UBV2 1
|
| 71 |
+
Class II aldolase/adducin N-terminal [IPR001303] 0.7899432278994298 0.6431917149066797 0.520099708624417 1.0 0.9390664601748504 2 P35611 1
|
| 72 |
+
Post-SET domain [IPR003616] 0.7891321978913151 0.6405146340756861 0.5218380782577909 1.0 0.9390664601748504 2 Q03164 1
|
| 73 |
+
Sorting nexin Vps5-like, C-terminal [IPR015404] 0.787915652879151 0.6365056371271158 0.5244469079489644 1.0 0.9390664601748504 2 O60749 1
|
| 74 |
+
Plasma membrane calcium transporting P-type ATPase, C-terminal [IPR022141] 0.7789943227899404 0.6073556380322466 0.5436149220906312 1.0 0.9460937754200788 2 P23634 1
|
| 75 |
+
SCP2 sterol-binding domain [IPR003033] 0.6539553752535421 0.5517656528782524 0.5811089224315713 1.0 0.9573901430517756 3 Q6YN16,P51659 2
|
| 76 |
+
BRO1 domain [IPR004328] 0.7603406326034002 0.5479214693786539 0.5837458263572315 1.0 0.9573901430517756 2 Q5VW32 1
|
| 77 |
+
Syntaxin, N-terminal domain [IPR006011] 0.6449094262832511 0.5212190741396282 0.6022141681398967 1.0 0.969716069439148 3 Q86Y82 1
|
| 78 |
+
Sec23, C-terminal [IPR037550] 0.740875912408756 0.4883264425158674 0.6253186346639805 1.0 0.982137058367908 2 Q15436 1
|
| 79 |
+
MIRO domain [IPR020860] 0.7396593673965934 0.4846907599459686 0.6278957219130055 1.0 0.9830475096075172 2 Q8IXI1 1
|
| 80 |
+
EF hand associated, type-1 [IPR013566] 0.7396593673965934 0.4846907599459686 0.6278957219130055 1.0 0.9830475096075172 2 Q8IXI1 1
|
| 81 |
+
EF hand associated, type-2 [IPR013567] 0.7396593673965934 0.4846907599459686 0.6278957219130055 1.0 0.9830475096075172 2 Q8IXI1 1
|
| 82 |
+
Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain [IPR012001] 0.7311435523114285 0.4595510460765343 0.6458385041760502 1.0 0.9873123405629542 2 A1L0T0 1
|
| 83 |
+
Thiamine pyrophosphate enzyme, central domain [IPR012000] 0.7311435523114285 0.4595510460765343 0.6458385041760502 1.0 0.9873123405629542 2 A1L0T0 1
|
| 84 |
+
Thiamine pyrophosphate enzyme, C-terminal TPP-binding [IPR011766] 0.7311435523114285 0.4595510460765343 0.6458385041760502 1.0 0.9873123405629542 2 A1L0T0 1
|
| 85 |
+
LEM-like domain [IPR013146] 0.7234387672343854 0.4372883245637051 0.6619022615602554 1.0 0.9873123405629542 2 P42167 1
|
| 86 |
+
Cyclic nucleotide-binding domain [IPR000595] 0.6178307824468569 0.4333803073024665 0.6647385045894418 1.0 0.9873123405629542 3 P10644 1
|
| 87 |
+
SUN coiled coil domain 2 [IPR040994] 0.7210056772100495 0.4303564602027114 0.6669363622203441 1.0 0.9873123405629542 2 Q9UH99 1
|
| 88 |
+
Heterogeneous nuclear ribonucleoprotein Q acidic domain [IPR041337] 0.720194647201946 0.4280565408330652 0.6686099562427061 1.0 0.9873123405629542 2 O43390 1
|
| 89 |
+
Dynamin GTPase effector [IPR003130] 0.7169505271695051 0.4189109593271182 0.6752812073265848 1.0 0.9873123405629542 2 O00429 1
|
| 90 |
+
Dynamin stalk domain [IPR000375] 0.7169505271695051 0.4189109593271182 0.6752812073265848 1.0 0.9873123405629542 2 O00429 1
|
| 91 |
+
GTPase effector domain [IPR020850] 0.7169505271695051 0.4189109593271182 0.6752812073265848 1.0 0.9873123405629542 2 O00429 1
|
| 92 |
+
Acyl-CoA-binding protein, ACBP [IPR000582] 0.6125760649087131 0.4170222671700632 0.676662120622552 1.0 0.9873123405629542 3 Q9H3P7,Q5T8D3 2
|
| 93 |
+
DNA mismatch repair protein MutS, clamp [IPR007861] 0.7064071370640668 0.3898000067832887 0.6966844387522653 1.0 0.9873123405629542 2 P43246 1
|
| 94 |
+
STAT transcription factor, protein interaction [IPR013799] 0.7011354420113507 0.3756062993313013 0.7072096069488487 1.0 0.9873123405629542 2 P42224 1
|
| 95 |
+
STAT transcription factor, DNA-binding [IPR013801] 0.7011354420113507 0.3756062993313013 0.7072096069488487 1.0 0.9873123405629542 2 P42224 1
|
| 96 |
+
STAT transcription factor, all-alpha domain [IPR013800] 0.7011354420113507 0.3756062993313013 0.7072096069488487 1.0 0.9873123405629542 2 P42224 1
|
| 97 |
+
Chromo shadow domain [IPR008251] 0.5955375253549602 0.3656846959209142 0.7146003672280588 1.0 0.9873123405629542 3 P83916,Q13185 2
|
| 98 |
+
Chromo domain subgroup [IPR017984] 0.5955375253549602 0.3656846959209142 0.7146003672280588 1.0 0.9873123405629542 3 P83916,Q13185 2
|
| 99 |
+
Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain [IPR004099] 0.5914069952379943 0.3536519170647668 0.7235997612734619 1.0 0.9873123405629542 3 P00390 1
|
| 100 |
+
Serine-tRNA ligase catalytic core domain [IPR033729] 0.6905920519059208 0.3479711752694002 0.7278618311114289 1.0 0.9873123405629542 2 P49591 1
|
| 101 |
+
Tudor domain [IPR002999] 0.4152605419126821 0.3411646478865756 0.7329796353342539 1.0 0.9873123405629542 6 Q14739 1
|
| 102 |
+
PDZ domain [IPR001478] 0.4155823229937059 0.3265778405184209 0.7439872060334916 1.0 0.9873123405629542 12 Q96RT1,Q9HD26,Q14160,Q9NZW5,Q00013,Q14168 6
|
| 103 |
+
Protein kinase C-like, phorbol ester/diacylglycerol-binding domain [IPR002219] 0.5784963829658853 0.3171447580555305 0.7511337644281704 1.0 0.9873123405629542 3 Q13464 1
|
| 104 |
+
Tim44-like domain [IPR007379] 0.6759935117599314 0.3114326999896279 0.7554716980474887 1.0 0.9873123405629542 2 O43615 1
|
| 105 |
+
Zinc finger C2H2 AKAP95-type [IPR034736] 0.672343876723438 0.3026225280576644 0.7621775441295897 1.0 0.9873123405629542 2 Q5BKZ1 1
|
| 106 |
+
Myosin tail [IPR002928] 0.5679513184584074 0.288623682069723 0.7728693707498806 1.0 0.9873123405629542 3 P35579,P35580 2
|
| 107 |
+
AGC-kinase, C-terminal [IPR000961] 0.4540143672626128 0.2810892648579227 0.7786419347754898 1.0 0.9873123405629542 4 P51812 1
|
| 108 |
+
Zinc finger, C3HC4 RING-type [IPR018957] 0.6565287915652872 0.2660013839801106 0.7902381431498773 1.0 0.9873123405629542 2 O75150 1
|
| 109 |
+
Methyltransferase type 11 [IPR013216] 0.6496350364963486 0.2508496698574328 0.8019303380085909 1.0 0.9873123405629542 2 Q8N6R0 1
|
| 110 |
+
Kinesin-like [IPR022164] 0.6480129764801279 0.2473576225527793 0.8046314675710033 1.0 0.9873123405629542 2 Q9Y3P9 1
|
| 111 |
+
Ras GTPase-activating domain [IPR001936] 0.551255036271888 0.2459937576677009 0.8056870647182774 1.0 0.9873123405629542 3 Q14C86 1
|
| 112 |
+
Ribosome receptor lysine/proline rich [IPR007794] 0.6155717761557145 0.1835122268494145 0.8543961260420285 1.0 0.9873123405629542 2 Q9P2E9 1
|
| 113 |
+
FATC domain [IPR003152] 0.51845841784989 0.1719252535138593 0.8634962927547774 1.0 0.9873123405629542 3 P78527,P42345 2
|
| 114 |
+
PIK-related kinase [IPR014009] 0.51845841784989 0.1719252535138593 0.8634962927547774 1.0 0.9873123405629542 3 P78527,P42345 2
|
| 115 |
+
PIK-related kinase, FAT [IPR003151] 0.51845841784989 0.1719252535138593 0.8634962927547774 1.0 0.9873123405629542 3 P78527,P42345 2
|
| 116 |
+
Exportin-2, central domain [IPR013713] 0.5135902636916713 0.1620752387638628 0.8712466049749623 1.0 0.9873123405629542 3 O15397,P55060 2
|
| 117 |
+
K Homology domain, type 1 [IPR004088] 0.3964402558617464 0.1386251241830276 0.8897463887688355 1.0 0.9873123405629542 20 Q92945,P61978,Q9NQT5,Q96AE4,Q9Y6M1,Q96PU8,Q96I24,Q07666,P51116 9
|
| 118 |
+
Aldehyde dehydrogenase domain [IPR015590] 0.356997674621847 0.1321330532203914 0.8948790524214747 1.0 0.9873123405629542 10 P51648 1
|
| 119 |
+
CBS domain [IPR000644] 0.4880324543610481 0.115362929037027 0.9081574610793504 1.0 0.9922711040817468 3 P54619,P51798 2
|
| 120 |
+
U-box domain [IPR003613] 0.3892045454545425 0.1132662632824606 0.9098194630799364 1.0 0.9929403722533952 4 Q9UMS4,Q7Z6E9,P19474 3
|
| 121 |
+
Ku70/Ku80, N-terminal alpha/beta [IPR005161] 0.5575831305758265 0.0983629059809678 0.9216441285400894 1.0 0.9958415354447288 2 P13010 1
|
| 122 |
+
Ku70/Ku80 beta-barrel domain [IPR006164] 0.5575831305758265 0.0983629059809678 0.9216441285400894 1.0 0.9958415354447288 2 P13010 1
|
| 123 |
+
Ku70/Ku80 C-terminal arm [IPR005160] 0.5575831305758265 0.0983629059809678 0.9216441285400894 1.0 0.9958415354447288 2 P13010 1
|
| 124 |
+
G-protein gamma-like domain [IPR015898] 0.5462287104622886 0.0859190826327574 0.9315307418570158 1.0 0.9958415354447288 2 P63218 1
|
| 125 |
+
AMP-binding enzyme, C-terminal domain [IPR025110] 0.5409570154095694 0.0805843368700253 0.9357725230562828 1.0 0.9958415354447288 2 Q6P1M0 1
|
| 126 |
+
rRNA-processing arch domain [IPR025696] 0.5401459854014531 0.0797879988263264 0.9364058694412094 1.0 0.9958415354447288 2 Q15477 1
|
| 127 |
+
ATP-dependent RNA helicase Ski2, C-terminal [IPR012961] 0.5401459854014531 0.0797879988263264 0.9364058694412094 1.0 0.9958415354447288 2 Q15477 1
|
| 128 |
+
14-3-3 domain [IPR023410] 0.3379366368805875 0.0788609468873493 0.937143226328957 1.0 0.9958415354447288 6 P63104,P31946,P27348,P62258,P61981 5
|
| 129 |
+
Peptidase M41 [IPR000642] 0.5263584752635835 0.0672181948359739 0.9464080004984894 1.0 0.997409730974761 2 Q9Y4W6 1
|
| 130 |
+
Dbl homology (DH) domain [IPR000219] 0.525141930251412 0.0661947833498509 0.947222749951099 1.0 0.997409730974761 2 Q14155 1
|
| 131 |
+
PurM-like, C-terminal domain [IPR010918] 0.4503042596348797 0.0616914512875567 0.9508085478877047 1.0 0.9997538878171006 3 O15067,P49903 2
|
| 132 |
+
FDF domain [IPR019050] 0.5158150851581448 0.0587918218745653 0.9531179223934044 1.0 1.0 2 Q96F86 1
|
| 133 |
+
DFDF domain [IPR025762] 0.5158150851581448 0.0587918218745653 0.9531179223934044 1.0 1.0 2 Q96F86 1
|
| 134 |
+
Lsm14-like, N-terminal [IPR025609] 0.5158150851581448 0.0587918218745653 0.9531179223934044 1.0 1.0 2 Q96F86 1
|
| 135 |
+
3-hydroxyacyl-CoA dehydrogenase, NAD binding [IPR006176] 0.5113544201135389 0.0555208911776015 0.9557234868655532 1.0 1.0 2 Q16836 1
|
| 136 |
+
3-hydroxyacyl-CoA dehydrogenase, C-terminal [IPR006108] 0.5113544201135389 0.0555208911776015 0.9557234868655532 1.0 1.0 2 Q16836 1
|
| 137 |
+
Heat shock protein DnaJ, cysteine-rich domain [IPR001305] 0.5052716950527126 0.0513308349249977 0.9590618977670812 1.0 1.0 2 Q96EY1 1
|
| 138 |
+
Chaperone DnaJ, C-terminal [IPR002939] 0.4389452332657075 0.0489626505092149 0.9609490607963008 1.0 1.0 3 Q96EY1,P31689 2
|
| 139 |
+
Acyltransferase, C-terminal domain [IPR032098] 0.4975669099756717 0.0464539679822547 0.9629484226770446 1.0 1.0 2 Q92604 1
|
| 140 |
+
DNA mismatch repair protein MutS, core [IPR007696] 0.4355734957018201 0.0454737790011221 0.9637296745977408 1.0 1.0 3 P43246 1
|
| 141 |
+
DNA mismatch repair protein MutS, connector domain [IPR007860] 0.4355734957018201 0.0454737790011221 0.9637296745977408 1.0 1.0 3 P43246 1
|
| 142 |
+
DNA mismatch repair protein MutS-like, N-terminal [IPR007695] 0.4355734957018201 0.0454737790011221 0.9637296745977408 1.0 1.0 3 P43246 1
|
| 143 |
+
DNA mismatch repair protein MutS, C-terminal [IPR000432] 0.4355734957018201 0.0454737790011221 0.9637296745977408 1.0 1.0 3 P43246 1
|
| 144 |
+
Heat shock chaperonin-binding [IPR006636] 0.4955393349553846 0.0452477194890693 0.9639098585234548 1.0 1.0 2 P54727 1
|
| 145 |
+
Man1/Src1, C-terminal [IPR018996] 0.4886455798864547 0.0413773723073244 0.9669950516281828 1.0 1.0 2 Q8NC56 1
|
| 146 |
+
Peptidase M16, middle/third domain [IPR032632] 0.4858069748580693 0.0398843486482623 0.968185329143766 1.0 1.0 2 O43847 1
|
| 147 |
+
PABP, RNA recognition motif 2 [IPR045305] 0.4789132197891262 0.0364922089690408 0.9708898909154178 1.0 1.0 2 Q13310 1
|
| 148 |
+
TOG domain [IPR034085] 0.3213149026014023 0.035698337848471 0.9715228959136144 1.0 1.0 6 Q8TEX9,O00410 2
|
| 149 |
+
BAR domain [IPR004148] 0.4162271805273688 0.0278884954878832 0.9777510841467096 1.0 1.0 3 Q9Y371,Q68EM7 2
|
| 150 |
+
CRAL-TRIO lipid binding domain [IPR001251] 0.4537712895377173 0.0266559374147155 0.9787341574812998 1.0 1.0 2 P21359 1
|
| 151 |
+
Gelsolin-like domain [IPR007123] 0.3378392697059809 0.0265024919983417 0.9788565459712352 1.0 1.0 4 Q15437,Q15436 2
|
| 152 |
+
26S proteasome regulatory subunit Rpn7, N-terminal [IPR045135] 0.4525547445255422 0.0262706268105201 0.9790414832318322 1.0 1.0 2 Q15008 1
|
| 153 |
+
PurM-like, N-terminal domain [IPR016188] 0.4501216545012134 0.0255226647469144 0.9796380705204693 1.0 1.0 2 P49903 1
|
| 154 |
+
Jumonji, helical domain [IPR041070] 0.4432278994322795 0.0235611701646238 0.9812026452659262 1.0 1.0 2 O75151 1
|
| 155 |
+
Ras-associating (RA) domain [IPR000159] 0.4355231143552322 0.0216272109405084 0.98274532741381 1.0 1.0 2 Q9Y4G8 1
|
| 156 |
+
ATP-dependent RNA helicase eIF4A, DEAD-box helicase domain [IPR044728] 0.4351175993511678 0.021532529857405 0.982820854400031 1.0 1.0 2 Q14240 1
|
| 157 |
+
Histone deacetylase domain [IPR023801] 0.4294403892943925 0.0202774032902379 0.9838220816432404 1.0 1.0 2 Q13547 1
|
| 158 |
+
Cadherin prodomain [IPR014868] 0.3872668288726697 0.0142768797566297 0.9886090850340896 1.0 1.0 2 Q14574 1
|
| 159 |
+
Cadherin, cytoplasmic domain [IPR000233] 0.3872668288726697 0.0142768797566297 0.9886090850340896 1.0 1.0 2 Q14574 1
|
| 160 |
+
Staufen, C-terminal [IPR032478] 0.3860502838605026 0.0141715255847355 0.9886931369977608 1.0 1.0 2 O75569 1
|
| 161 |
+
IBR domain [IPR002867] 0.3746958637469629 0.0133209335248752 0.989371747131693 1.0 1.0 2 Q9Y4X5 1
|
| 162 |
+
Ariadne domain [IPR045840] 0.3746958637469629 0.0133209335248752 0.989371747131693 1.0 1.0 2 Q9Y4X5 1
|
| 163 |
+
TRIAD supradomain [IPR044066] 0.3746958637469629 0.0133209335248752 0.989371747131693 1.0 1.0 2 Q9Y4X5 1
|
| 164 |
+
Cadherin-like [IPR002126] 0.3874239350912673 0.0086540865069123 0.993095124176446 1.0 1.0 3 Q14126,Q14574 2
|
| 165 |
+
Aminoacyl-tRNA synthetase, class II (D/K/N) [IPR004364] 0.3157467532467501 0.0016509366418597 0.9986827437409802 1.0 1.0 4 Q6PI48,Q15046,O43776 3
|
interpro_domain/selections.json
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
interpro_family/advanced/idx2term.json
ADDED
|
@@ -0,0 +1 @@
|
|
|
|
|
|
|
| 1 |
+
{"0": "Beta tubulin [IPR002453]", "1": "Tubulin [IPR000217]", "2": "Proteasome B-type subunit [IPR023333]", "3": "P-type ATPase [IPR001757]"}
|
interpro_family/advanced/plot_0.png
ADDED
|
Git LFS Details
|
interpro_family/advanced/plot_1.png
ADDED
|
Git LFS Details
|