Datasets:
ligdis
/
interpro_binding_site

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The dataset generation failed because of a cast error
Error code:   DatasetGenerationCastError
Exception:    DatasetGenerationCastError
Message:      An error occurred while generating the dataset

All the data files must have the same columns, but at some point there are 4 new columns ({'setsize', 'overlap', 'pval', 'score'}) and 8 missing columns ({'overlap_std', 'setsize_std', 'score_std', 'score_mean', 'setsize_mean', 'pval_mean', 'pval_std', 'overlap_mean'}).

This happened while the csv dataset builder was generating data using

hf://datasets/ligdis/interpro_binding_site/fragment/C001/C001_val_log2fc/harmon.tsv (at revision bcb7b6655c20fb102dee5053b73570c59bdeac7d)

Please either edit the data files to have matching columns, or separate them into different configurations (see docs at https://hf.co/docs/hub/datasets-manual-configuration#multiple-configurations)
Traceback:    Traceback (most recent call last):
                File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/builder.py", line 1870, in _prepare_split_single
                  writer.write_table(table)
                File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/arrow_writer.py", line 622, in write_table
                  pa_table = table_cast(pa_table, self._schema)
                File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/table.py", line 2292, in table_cast
                  return cast_table_to_schema(table, schema)
                File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/table.py", line 2240, in cast_table_to_schema
                  raise CastError(
              datasets.table.CastError: Couldn't cast
              term: string
              overlap: int64
              setsize: int64
              score: double
              pval: double
              -- schema metadata --
              pandas: '{"index_columns": [{"kind": "range", "name": null, "start": 0, "' + 810
              to
              {'term': Value(dtype='string', id=None), 'overlap_mean': Value(dtype='float64', id=None), 'setsize_mean': Value(dtype='float64', id=None), 'score_mean': Value(dtype='float64', id=None), 'pval_mean': Value(dtype='float64', id=None), 'overlap_std': Value(dtype='float64', id=None), 'setsize_std': Value(dtype='float64', id=None), 'score_std': Value(dtype='float64', id=None), 'pval_std': Value(dtype='float64', id=None)}
              because column names don't match
              
              During handling of the above exception, another exception occurred:
              
              Traceback (most recent call last):
                File "/src/services/worker/src/worker/job_runners/config/parquet_and_info.py", line 1420, in compute_config_parquet_and_info_response
                  parquet_operations = convert_to_parquet(builder)
                File "/src/services/worker/src/worker/job_runners/config/parquet_and_info.py", line 1052, in convert_to_parquet
                  builder.download_and_prepare(
                File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/builder.py", line 924, in download_and_prepare
                  self._download_and_prepare(
                File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/builder.py", line 1000, in _download_and_prepare
                  self._prepare_split(split_generator, **prepare_split_kwargs)
                File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/builder.py", line 1741, in _prepare_split
                  for job_id, done, content in self._prepare_split_single(
                File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/builder.py", line 1872, in _prepare_split_single
                  raise DatasetGenerationCastError.from_cast_error(
              datasets.exceptions.DatasetGenerationCastError: An error occurred while generating the dataset
              
              All the data files must have the same columns, but at some point there are 4 new columns ({'setsize', 'overlap', 'pval', 'score'}) and 8 missing columns ({'overlap_std', 'setsize_std', 'score_std', 'score_mean', 'setsize_mean', 'pval_mean', 'pval_std', 'overlap_mean'}).
              
              This happened while the csv dataset builder was generating data using
              
              hf://datasets/ligdis/interpro_binding_site/fragment/C001/C001_val_log2fc/harmon.tsv (at revision bcb7b6655c20fb102dee5053b73570c59bdeac7d)
              
              Please either edit the data files to have matching columns, or separate them into different configurations (see docs at https://hf.co/docs/hub/datasets-manual-configuration#multiple-configurations)

Need help to make the dataset viewer work? Make sure to review how to configure the dataset viewer, and open a discussion for direct support.

term
string
overlap_mean
float64
setsize_mean
float64
score_mean
float64
pval_mean
float64
overlap_std
float64
setsize_std
float64
score_std
float64
pval_std
float64
2-oxo acid dehydrogenase, lipoyl-binding site [IPR003016]
2.257282
3.470874
-0.84423
0.4053
1.106828
0.658497
0.93741
0.309583
2Fe-2S ferredoxin, iron-sulphur binding site [IPR006058]
0.262136
1
1.027694
0.235933
0.439796
0
1.724049
0.273022
6-phosphogluconate-binding site [IPR006184]
0.762136
1
-0.998784
0.262901
0.425775
0
1.611888
0.283444
AP endonuclease 1, binding site [IPR020847]
0.76699
1.109223
-0.805427
0.224964
0.506346
0.311919
1.892955
0.2753
APOBEC/CMP deaminase, zinc-binding [IPR016192]
0.642361
1.170139
-0.349237
0.287224
0.527584
0.375755
1.851386
0.305227
Aconitase family, 4Fe-4S cluster binding site [IPR018136]
1.320388
1.919903
-0.846708
0.476944
0.618699
0.271443
1.020785
0.325601
Adenylosuccinate synthase, GTP-binding site [IPR018220]
0.57767
1
-0.237546
0.313245
0.493931
0
1.690871
0.287429
Adrenodoxin, iron-sulphur binding site [IPR018298]
0.428571
1
-0.437706
0.277171
0.494872
0
1.928171
0.291378
Aminotransferase class-V, pyridoxal-phosphate binding site [IPR020578]
1.337379
1.754854
-1.182845
0.338453
0.62338
0.430174
1.24864
0.318335
Aminotransferase, class-II, pyridoxal-phosphate binding site [IPR001917]
1.092457
1.946472
-0.095038
0.562738
0.677204
0.282595
1.082112
0.328113
Aminotransferases, class-I, pyridoxal-phosphate-binding site [IPR004838]
1.533981
2
-0.847738
0.488675
0.620296
0
0.966126
0.318745
Aryldialkylphosphatase, zinc-binding site [IPR017947]
0.469388
1
0.21913
0.228243
0.499062
0
1.722236
0.246405
Beta tubulin, autoregulation binding site [IPR013838]
3.553398
5.541262
0.582351
0.380834
1.557806
0.96328
1.190626
0.305896
Biotin-binding site [IPR001882]
3.682039
4
-1.814309
0.094003
0.726321
0
1.374683
0.194565
Coenzyme A transferase binding site [IPR004163]
0.770408
1
-1.280804
0.173199
0.42057
0
1.902844
0.249781
Copper centre Cu(A) [IPR001505]
0.191748
1
1.410845
0.166434
0.393676
0
1.839422
0.245172
Cytochrome b5, heme-binding site [IPR018506]
0.165049
1
1.885724
0.04684
0.371224
0
2.052073
0.114122
Cytochrome c oxidase, subunit I, copper-binding site [IPR023615]
0.666667
1
-1.094907
0.183442
0.471405
0
2.194941
0.258485
Cytochrome c oxidase, subunit Vb, zinc binding site [IPR020893]
0.530864
1
-0.177729
0.334737
0.499046
0
1.60788
0.290579
EF-Hand 1, calcium-binding site [IPR018247]
10.019417
36.706311
0.953294
0.389456
3.760372
3.057485
1.108235
0.340884
Fumarate reductase/succinate dehydrogenase, FAD-binding site [IPR003952]
0.730583
1
-0.839577
0.269245
0.443657
0
1.599795
0.276511
Hexokinase, binding site [IPR019807]
0.883495
2
0.021725
0.573833
0.763881
0
1.132435
0.341544
IQ motif, EF-hand binding site [IPR000048]
4.902913
10.793689
-0.227305
0.513462
2.787854
2.339749
1.00213
0.321441
Inositol monophosphatase, metal-binding site [IPR020583]
0.976623
1.296104
-1.363845
0.237896
0.526665
0.494763
1.550696
0.289486
Legume lectin, beta chain, Mn/Ca-binding site [IPR019825]
0.519231
1
0.026403
0.157792
0.49963
0
2.118692
0.233356
Manganese/iron superoxide dismutase, binding site [IPR019833]
0.82716
1
-1.477586
0.146227
0.378108
0
1.749619
0.218
PPM-type phosphatase, divalent cation binding [IPR000222]
1.376214
2.570388
-0.19959
0.583422
0.776923
0.636584
0.955501
0.312223
Peptidase M16, zinc-binding site [IPR001431]
1.730583
5
0.677655
0.474006
1.21189
0
0.807986
0.314627
Peptidase M24A, methionine aminopeptidase, subfamily 2, binding site [IPR018349]
1.199029
1.822816
-0.53648
0.452076
0.699652
0.381825
1.288602
0.33042
Porphobilinogen deaminase, dipyrromethane cofactor binding site [IPR022419]
0.622691
1
-0.354498
0.266508
0.484713
0
1.818948
0.275048
Protein kinase, ATP binding site [IPR017441]
13.985437
45.864078
-0.192127
0.614786
6.814447
9.807663
0.86516
0.319854
RNA polymerases, subunit N, zinc binding site [IPR020789]
0.561404
1
-0.159134
0.374512
0.496215
0
1.411436
0.292967
Serine hydroxymethyltransferase, pyridoxal phosphate binding site [IPR019798]
0.961165
1.956311
-0.034402
0.524214
0.629722
0.204403
1.218174
0.332611
Serine/threonine dehydratase, pyridoxal-phosphate-binding site [IPR000634]
1
1
-3.041924
0.049712
0
0
1.256697
0.095629
Sigma-54 interaction domain, ATP-binding site 1 [IPR025662]
0.36165
1
0.396587
0.384768
0.480478
0
1.396681
0.297845
Transketolase binding site [IPR020826]
0.856796
1
-1.519013
0.179865
0.350281
0
1.538704
0.256551
Ureohydrolase, manganese-binding site [IPR020855]
0.69112
1
-0.861159
0.19127
0.462032
0
1.908953
0.241245
2-oxo acid dehydrogenase, lipoyl-binding site [IPR003016]
1
2
0.126401
0.899415
0
0
0
0
2Fe-2S ferredoxin, iron-sulphur binding site [IPR006058]
1
1
-1.769635
0.076788
0
0
0
0
Adenylosuccinate synthase, GTP-binding site [IPR018220]
0
1
3.133539
0.001727
0
0
0
0
Aminotransferase class-V, pyridoxal-phosphate binding site [IPR020578]
0
1
0.955076
0.339539
0
0
0
0
Aminotransferase, class-II, pyridoxal-phosphate binding site [IPR001917]
1
1
-2.433359
0.014959
0
0
0
0
Beta tubulin, autoregulation binding site [IPR013838]
5
7
1.26408
0.206201
0
0
0
0
Copper centre Cu(A) [IPR001505]
0
1
1.184104
0.236372
0
0
0
0
Cytochrome b5, heme-binding site [IPR018506]
0
1
2.73641
0.006211
0
0
0
0
EF-Hand 1, calcium-binding site [IPR018247]
16
35
-0.780643
0.435013
0
0
0
0
Hexokinase, binding site [IPR019807]
1
1
-2.252226
0.024308
0
0
0
0
IQ motif, EF-hand binding site [IPR000048]
1
4
0.500199
0.616935
0
0
0
0
Legume lectin, beta chain, Mn/Ca-binding site [IPR019825]
0
1
3.200911
0.00137
0
0
0
0
PPM-type phosphatase, divalent cation binding [IPR000222]
0
3
0.502287
0.615466
0
0
0
0
Peptidase M16, zinc-binding site [IPR001431]
1
4
0.456682
0.647899
0
0
0
0
Peptidase M24A, methionine aminopeptidase, subfamily 2, binding site [IPR018349]
0
1
2.451127
0.014241
0
0
0
0
Protein kinase, ATP binding site [IPR017441]
10
44
-0.52605
0.598853
0
0
0
0
Serine hydroxymethyltransferase, pyridoxal phosphate binding site [IPR019798]
1
2
-0.519169
0.603643
0
0
0
0
Sigma-54 interaction domain, ATP-binding site 1 [IPR025662]
1
1
-2.673952
0.007496
0
0
0
0
Ureohydrolase, manganese-binding site [IPR020855]
0
1
1.442008
0.1493
0
0
0
0
2-oxo acid dehydrogenase, lipoyl-binding site [IPR003016]
1
2
0.657883
0.510614
0
0
0
0
2Fe-2S ferredoxin, iron-sulphur binding site [IPR006058]
1
1
-1.557136
0.119438
0
0
0
0
Adenylosuccinate synthase, GTP-binding site [IPR018220]
0
1
0.108606
0.913515
0
0
0
0
Aminotransferase class-V, pyridoxal-phosphate binding site [IPR020578]
0
1
1.752775
0.079641
0
0
0
0
Aminotransferase, class-II, pyridoxal-phosphate binding site [IPR001917]
0
1
1.337191
0.18116
0
0
0
0
Beta tubulin, autoregulation binding site [IPR013838]
6
7
-2.366762
0.017944
0
0
0
0
Copper centre Cu(A) [IPR001505]
1
1
-1.86197
0.062607
0
0
0
0
Cytochrome b5, heme-binding site [IPR018506]
1
1
-2.175208
0.029615
0
0
0
0
EF-Hand 1, calcium-binding site [IPR018247]
14
35
-0.961228
0.336437
0
0
0
0
Hexokinase, binding site [IPR019807]
1
1
-1.586122
0.112712
0
0
0
0
IQ motif, EF-hand binding site [IPR000048]
1
4
1.382951
0.16668
0
0
0
0
Legume lectin, beta chain, Mn/Ca-binding site [IPR019825]
1
1
-0.285241
0.775459
0
0
0
0
PPM-type phosphatase, divalent cation binding [IPR000222]
2
3
0.145334
0.884447
0
0
0
0
Peptidase M16, zinc-binding site [IPR001431]
3
4
-0.512759
0.60812
0
0
0
0
Peptidase M24A, methionine aminopeptidase, subfamily 2, binding site [IPR018349]
0
1
0.277114
0.781692
0
0
0
0
Protein kinase, ATP binding site [IPR017441]
22
44
0.891809
0.372495
0
0
0
0
Serine hydroxymethyltransferase, pyridoxal phosphate binding site [IPR019798]
1
2
1.250894
0.210973
0
0
0
0
Sigma-54 interaction domain, ATP-binding site 1 [IPR025662]
0
1
0.628995
0.529352
0
0
0
0
Ureohydrolase, manganese-binding site [IPR020855]
0
1
0.909834
0.36291
0
0
0
0
2-oxo acid dehydrogenase, lipoyl-binding site [IPR003016]
2
3
0.027159
0.261122
0
1
1.124157
0.01152
2Fe-2S ferredoxin, iron-sulphur binding site [IPR006058]
0
1
2.873747
0.01203
0
0
0.609599
0.011535
6-phosphogluconate-binding site [IPR006184]
0
1
4.105812
0.00004
0
0
0
0
AP endonuclease 1, binding site [IPR020847]
0
2
1.04453
0.29624
0
0
0
0
APOBEC/CMP deaminase, zinc-binding [IPR016192]
2
2
-1.514517
0.129895
0
0
0
0
Aconitase family, 4Fe-4S cluster binding site [IPR018136]
1
2
2.186305
0.028793
0
0
0
0
Adenylosuccinate synthase, GTP-binding site [IPR018220]
0
1
2.365451
0.316459
0
0
1.887796
0.316438
Adrenodoxin, iron-sulphur binding site [IPR018298]
1
1
-4.026739
0.000057
0
0
0
0
Aminotransferase class-V, pyridoxal-phosphate binding site [IPR020578]
0.5
1.5
-0.056448
0.070686
0.5
0.5
1.810363
0.008759
Aminotransferase, class-II, pyridoxal-phosphate binding site [IPR001917]
1
2
-1.490467
0.236224
0
1
0.728271
0.209719
Aminotransferases, class-I, pyridoxal-phosphate-binding site [IPR004838]
1
2
3.479919
0.000502
0
0
0
0
Aryldialkylphosphatase, zinc-binding site [IPR017947]
1
1
-3.203864
0.001356
0
0
0
0
Beta tubulin, autoregulation binding site [IPR013838]
5
7
1.679861
0.129045
0
0
0.470628
0.097528
Biotin-binding site [IPR001882]
3
4
3.044781
0.002328
0
0
0
0
Coenzyme A transferase binding site [IPR004163]
1
1
-2.037971
0.041553
0
0
0
0
Copper centre Cu(A) [IPR001505]
0
1
3.124742
0.005125
0
0
0.549309
0.004886
Cytochrome b5, heme-binding site [IPR018506]
0
1
3.291229
0.00199
0
0
0.392884
0.001761
Cytochrome c oxidase, subunit I, copper-binding site [IPR023615]
1
1
-4.246684
0.000022
0
0
0
0
Cytochrome c oxidase, subunit Vb, zinc binding site [IPR020893]
0
1
3.032319
0.002427
0
0
0
0
EF-Hand 1, calcium-binding site [IPR018247]
24
42
2.206094
0.03857
11
7
0.376695
0.02877
Fumarate reductase/succinate dehydrogenase, FAD-binding site [IPR003952]
0
1
4.322207
0.000015
0
0
0
0
Hexokinase, binding site [IPR019807]
0.5
1.5
2.593746
0.012926
0.5
0.5
0.305237
0.009182
IQ motif, EF-hand binding site [IPR000048]
4
12
-0.428302
0.695832
2
8
0.428302
0.304168
Inositol monophosphatase, metal-binding site [IPR020583]
1
3
-0.888926
0.374043
0
0
0
0
Legume lectin, beta chain, Mn/Ca-binding site [IPR019825]
0.5
1
-1.165741
0.20506
0.5
0
1.992224
0.203471
End of preview.