The full dataset viewer is not available (click to read why). Only showing a preview of the rows.
The dataset generation failed because of a cast error
Error code: DatasetGenerationCastError
Exception: DatasetGenerationCastError
Message: An error occurred while generating the dataset
All the data files must have the same columns, but at some point there are 4 new columns ({'score', 'setsize', 'pval', 'overlap'}) and 8 missing columns ({'overlap_std', 'pval_std', 'setsize_std', 'score_std', 'overlap_mean', 'score_mean', 'setsize_mean', 'pval_mean'}).
This happened while the csv dataset builder was generating data using
hf://datasets/ligdis/interpro_family/fragment/C001/C001_val_log2fc/harmon.tsv (at revision a70ed15da1517c39eb36ff371275822a1eda8100)
Please either edit the data files to have matching columns, or separate them into different configurations (see docs at https://hf.co/docs/hub/datasets-manual-configuration#multiple-configurations)
Traceback: Traceback (most recent call last):
File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/builder.py", line 1870, in _prepare_split_single
writer.write_table(table)
File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/arrow_writer.py", line 622, in write_table
pa_table = table_cast(pa_table, self._schema)
File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/table.py", line 2292, in table_cast
return cast_table_to_schema(table, schema)
File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/table.py", line 2240, in cast_table_to_schema
raise CastError(
datasets.table.CastError: Couldn't cast
term: string
overlap: int64
setsize: int64
score: double
pval: double
-- schema metadata --
pandas: '{"index_columns": [{"kind": "range", "name": null, "start": 0, "' + 812
to
{'term': Value(dtype='string', id=None), 'overlap_mean': Value(dtype='float64', id=None), 'setsize_mean': Value(dtype='float64', id=None), 'score_mean': Value(dtype='float64', id=None), 'pval_mean': Value(dtype='float64', id=None), 'overlap_std': Value(dtype='float64', id=None), 'setsize_std': Value(dtype='float64', id=None), 'score_std': Value(dtype='float64', id=None), 'pval_std': Value(dtype='float64', id=None)}
because column names don't match
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/src/services/worker/src/worker/job_runners/config/parquet_and_info.py", line 1420, in compute_config_parquet_and_info_response
parquet_operations = convert_to_parquet(builder)
File "/src/services/worker/src/worker/job_runners/config/parquet_and_info.py", line 1052, in convert_to_parquet
builder.download_and_prepare(
File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/builder.py", line 924, in download_and_prepare
self._download_and_prepare(
File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/builder.py", line 1000, in _download_and_prepare
self._prepare_split(split_generator, **prepare_split_kwargs)
File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/builder.py", line 1741, in _prepare_split
for job_id, done, content in self._prepare_split_single(
File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/builder.py", line 1872, in _prepare_split_single
raise DatasetGenerationCastError.from_cast_error(
datasets.exceptions.DatasetGenerationCastError: An error occurred while generating the dataset
All the data files must have the same columns, but at some point there are 4 new columns ({'score', 'setsize', 'pval', 'overlap'}) and 8 missing columns ({'overlap_std', 'pval_std', 'setsize_std', 'score_std', 'overlap_mean', 'score_mean', 'setsize_mean', 'pval_mean'}).
This happened while the csv dataset builder was generating data using
hf://datasets/ligdis/interpro_family/fragment/C001/C001_val_log2fc/harmon.tsv (at revision a70ed15da1517c39eb36ff371275822a1eda8100)
Please either edit the data files to have matching columns, or separate them into different configurations (see docs at https://hf.co/docs/hub/datasets-manual-configuration#multiple-configurations)Need help to make the dataset viewer work? Make sure to review how to configure the dataset viewer, and open a discussion for direct support.
term
string | overlap_mean
float64 | setsize_mean
float64 | score_mean
float64 | pval_mean
float64 | overlap_std
float64 | setsize_std
float64 | score_std
float64 | pval_std
float64 |
|---|---|---|---|---|---|---|---|---|
(Uracil-5)-methyltransferase family [IPR010280]
| 0.494845
| 1.020619
| 0.10935
| 0.246476
| 0.499973
| 0.142104
| 1.946708
| 0.266504
|
-alpha-acetyltransferase 35, NatC auxiliary subunit [IPR007244]
| 0.199134
| 1
| 1.247811
| 0.215561
| 0.399349
| 0
| 1.600856
| 0.271275
|
1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase, eukaryotes [IPR027496]
| 0.297619
| 1
| 0.816456
| 0.182197
| 0.457211
| 0
| 1.963377
| 0.236468
|
1,4-alpha-glucan-branching enzyme [IPR037439]
| 0.566038
| 1
| -0.246384
| 0.209612
| 0.49562
| 0
| 2.076602
| 0.257283
|
1-Cys peroxiredoxin [IPR045020]
| 0.716019
| 1
| -0.983035
| 0.231425
| 0.450928
| 0
| 1.720562
| 0.261539
|
1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase delta-3 [IPR028406]
| 0.8
| 1
| -1.225925
| 0.24791
| 0.4
| 0
| 1.957516
| 0.298316
|
1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase gamma-1 [IPR028380]
| 0.577031
| 1
| -0.439845
| 0.274911
| 0.494031
| 0
| 1.826481
| 0.282216
|
1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase gamma-2 [IPR028381]
| 0.565217
| 1
| -0.359058
| 0.354197
| 0.495728
| 0
| 1.623524
| 0.334607
|
1-phosphatidylinositol-3phosphate-5-kinase [IPR043548]
| 0.166667
| 1
| 1.310343
| 0.282718
| 0.372678
| 0
| 1.014056
| 0.249827
|
14-3-3 protein [IPR000308]
| 4.368932
| 6
| -0.059264
| 0.462656
| 1.377632
| 0.184338
| 1.087124
| 0.305071
|
14-3-3 protein sigma [IPR037435]
| 0.857143
| 1
| -1.475431
| 0.251995
| 0.349927
| 0
| 0.986752
| 0.269111
|
14-3-3 theta [IPR042584]
| 0.635922
| 1
| -0.439385
| 0.322767
| 0.481171
| 0
| 1.574765
| 0.286697
|
14kDa phosphohistidine phosphatase [IPR028441]
| 0.269231
| 1
| 0.8872
| 0.092348
| 0.44356
| 0
| 2.084847
| 0.171002
|
16S/18S rRNA aminocarboxypropyltransferase Tsr3 [IPR022968]
| 0.428571
| 1
| 0.273402
| 0.320059
| 0.494872
| 0
| 1.672066
| 0.313555
|
18S rRNA (guanine(1575)-N(7))-methyltransferase Bud23-like [IPR039769]
| 0.496
| 1
| 0.06558
| 0.327551
| 0.499984
| 0
| 1.661584
| 0.293671
|
2'-5'-oligoadenylate synthase [IPR026774]
| 1
| 1
| -1.166415
| 0.282292
| 0
| 0
| 0.411058
| 0.168181
|
2-amino-3-ketobutyrate coenzyme A ligase [IPR011282]
| 0.491484
| 1
| 0.03171
| 0.309006
| 0.499927
| 0
| 1.687528
| 0.289271
|
2-deoxynucleoside 5-phosphate N-hydrolase 1, DNPH1 [IPR028607]
| 0.378641
| 1
| 0.492149
| 0.232122
| 0.485048
| 0
| 1.885202
| 0.265941
|
2-oxoglutarate and iron-dependent oxygenase domain-containing protein 3 [IPR039210]
| 0.166667
| 1
| 1.501975
| 0.136843
| 0.372678
| 0
| 1.910669
| 0.208699
|
2-oxoglutarate dehydrogenase E1 component [IPR011603]
| 0.873171
| 1.302439
| -0.766891
| 0.350314
| 0.561802
| 0.459314
| 1.390412
| 0.307942
|
2-oxoisovalerate dehydrogenase subunit alpha [IPR034616]
| 0.329412
| 1
| 0.604627
| 0.21532
| 0.47
| 0
| 1.99885
| 0.266573
|
2-phosphoglycolate phosphatase, eukaryotic [IPR006349]
| 0.927184
| 1.199029
| -1.598398
| 0.181851
| 0.451039
| 0.39927
| 1.664432
| 0.272171
|
26S Proteasome non-ATPase regulatory subunit 1 [IPR035266]
| 0.679612
| 1
| -0.633432
| 0.326923
| 0.466626
| 0
| 1.462174
| 0.283044
|
26S Proteasome non-ATPase regulatory subunit 11 [IPR035295]
| 0.15534
| 1
| 1.40542
| 0.179025
| 0.362228
| 0
| 1.473018
| 0.216576
|
26S Proteasome non-ATPase regulatory subunit 12 [IPR035297]
| 0.856796
| 1
| -1.626811
| 0.172531
| 0.350281
| 0
| 1.522021
| 0.244988
|
26S Proteasome non-ATPase regulatory subunit 12/COP9 signalosome complex subunit 4 [IPR040134]
| 0.81068
| 2
| -0.152696
| 0.623376
| 0.613823
| 0
| 0.982374
| 0.330265
|
26S Proteasome non-ATPase regulatory subunit 13 [IPR035298]
| 0.616505
| 1
| -0.358137
| 0.336494
| 0.486237
| 0
| 1.552988
| 0.289821
|
26S Proteasome non-ATPase regulatory subunit 14 [IPR035299]
| 0.473301
| 1
| 0.01529
| 0.344918
| 0.499287
| 0
| 1.6502
| 0.30779
|
26S Proteasome non-ATPase regulatory subunit 6 [IPR035268]
| 0.43932
| 1
| 0.202161
| 0.384326
| 0.496304
| 0
| 1.520075
| 0.309488
|
26S Proteasome non-ATPase regulatory subunit 7/8 [IPR033858]
| 0.390777
| 1
| 0.395108
| 0.32035
| 0.487924
| 0
| 1.61629
| 0.2893
|
26S Proteasome non-ATPase regulatory subunit 9 [IPR035269]
| 0.556452
| 1
| -0.131303
| 0.224735
| 0.496803
| 0
| 2.029153
| 0.271482
|
26S Proteasome regulatory subunit 4 [IPR035244]
| 0.415049
| 1
| 0.342303
| 0.36477
| 0.49273
| 0
| 1.483254
| 0.29853
|
26S Proteasome regulatory subunit 6A [IPR035254]
| 0.558252
| 1
| -0.169776
| 0.359758
| 0.496595
| 0
| 1.547401
| 0.294607
|
26S Proteasome regulatory subunit 6B [IPR035256]
| 0.786408
| 1
| -0.991337
| 0.271902
| 0.409842
| 0
| 1.50167
| 0.279382
|
26S Proteasome regulatory subunit 7 [IPR035245]
| 0.849515
| 1
| -1.297717
| 0.226597
| 0.357547
| 0
| 1.526563
| 0.260403
|
26S proteasome non-ATPase regulatory subunit 10-like [IPR039334]
| 0.434466
| 1
| 0.249552
| 0.262993
| 0.495687
| 0
| 1.781837
| 0.268808
|
26S proteasome non-ATPase regulatory subunit 3 [IPR035267]
| 0.216019
| 1
| 0.967895
| 0.315093
| 0.411528
| 0
| 1.354701
| 0.275854
|
26S proteasome non-ATPase regulatory subunit Rpn12 [IPR006746]
| 0.514563
| 1
| -0.067347
| 0.337685
| 0.499788
| 0
| 1.644167
| 0.297264
|
26S proteasome regulatory complex, non-ATPase subcomplex, Rpn1 subunit [IPR016643]
| 0.645631
| 1
| -0.41244
| 0.339824
| 0.478322
| 0
| 1.538701
| 0.301814
|
26S proteasome regulatory complex, non-ATPase subcomplex, Rpn2/Psmd1 subunit [IPR016642]
| 0.679612
| 1
| -0.633432
| 0.326923
| 0.466626
| 0
| 1.462174
| 0.283044
|
26S proteasome regulatory subunit 10B [IPR035263]
| 0.73301
| 1
| -0.681109
| 0.308133
| 0.442387
| 0
| 1.506459
| 0.278504
|
26S proteasome regulatory subunit P45-like [IPR005937]
| 4.196602
| 6
| -0.564113
| 0.433988
| 1.445679
| 0
| 0.89082
| 0.284371
|
26S proteasome regulatory subunit Rpn7/COP9 signalosome complex subunit 1 [IPR019585]
| 1.104369
| 1.98301
| -0.133898
| 0.612637
| 0.672829
| 0.129235
| 0.975771
| 0.323371
|
28S ribosomal protein S10, mitochondrial [IPR040055]
| 0.37931
| 1
| 0.299834
| 0.315544
| 0.485215
| 0
| 1.641245
| 0.282988
|
28S ribosomal protein S17, mitochondrial [IPR039193]
| 0.765217
| 1
| -0.997983
| 0.235158
| 0.423863
| 0
| 1.680913
| 0.26024
|
28S ribosomal protein S18b, mitochondrial [IPR040054]
| 0.54386
| 1
| -0.19102
| 0.277017
| 0.498073
| 0
| 1.611215
| 0.265057
|
28S ribosomal protein S24, mitochondrial [IPR026146]
| 0.522727
| 1
| -0.241112
| 0.210802
| 0.499483
| 0
| 2.054822
| 0.228906
|
28S ribosomal protein S25, mitochondrial [IPR040049]
| 0.464198
| 1
| 0.142884
| 0.301237
| 0.498717
| 0
| 1.665255
| 0.287776
|
28S ribosomal protein S26 [IPR026140]
| 0.442857
| 1
| 0.117176
| 0.150236
| 0.496724
| 0
| 2.337519
| 0.20944
|
28S ribosomal protein S27, mitochondrial [IPR019266]
| 0.486618
| 1
| 0.083893
| 0.357742
| 0.499821
| 0
| 1.504459
| 0.291333
|
28kDa heat- and acid-stable phosphoprotein [IPR039876]
| 0.504425
| 1
| -0.009281
| 0.219827
| 0.49998
| 0
| 2.047632
| 0.261605
|
3'-5' RNA helicase YTHDC2-like [IPR031083]
| 0.347222
| 1
| 0.452903
| 0.303297
| 0.476087
| 0
| 1.599728
| 0.26755
|
3'5'-cyclic nucleotide phosphodiesterase [IPR023088]
| 0.482759
| 1
| 0.448279
| 0.08011
| 0.499703
| 0
| 2.514968
| 0.176985
|
3-hydroxyacyl-CoA dehydrogenase [IPR022694]
| 0.252427
| 1
| 1.049185
| 0.205623
| 0.434405
| 0
| 1.773722
| 0.256736
|
3-hydroxyisobutyrate dehydrogenase [IPR011548]
| 0.799007
| 1
| -1.256957
| 0.184974
| 0.400742
| 0
| 1.688132
| 0.242048
|
3-hydroxyisobutyrate dehydrogenase-related [IPR015815]
| 0.799007
| 1
| -1.256957
| 0.184974
| 0.400742
| 0
| 1.688132
| 0.242048
|
3-keto-steroid reductase [IPR042829]
| 0.630137
| 1
| -0.561548
| 0.210343
| 0.482767
| 0
| 2.033108
| 0.268511
|
3-ketodihydrosphingosine reductase KDSR-like [IPR045022]
| 0.183417
| 1
| 1.672736
| 0.071076
| 0.387008
| 0
| 2.020893
| 0.153226
|
3-oxo-5-alpha-steroid 4-dehydrogenase/very-long-chain enoyl-CoA reductase [IPR039357]
| 0.442822
| 1
| 0.309806
| 0.158685
| 0.49672
| 0
| 2.244809
| 0.244685
|
3-oxoacid CoA-transferase [IPR014388]
| 0.770408
| 1
| -1.280804
| 0.173199
| 0.42057
| 0
| 1.902844
| 0.249781
|
39S ribosomal protein L40, mitochondrial [IPR039145]
| 0.253425
| 1
| 1.068969
| 0.179323
| 0.434972
| 0
| 1.818374
| 0.229633
|
39S ribosomal protein L42, mitochondrial [IPR019346]
| 0.65
| 1
| -1.249388
| 0.098586
| 0.47697
| 0
| 2.039989
| 0.112859
|
39S ribosomal protein L43/54S ribosomal protein L51 [IPR039927]
| 0.686275
| 1
| -0.699842
| 0.263449
| 0.464006
| 0
| 1.715422
| 0.285747
|
39S ribosomal protein L46, mitochondrial [IPR040008]
| 0.501292
| 1
| -0.12821
| 0.24813
| 0.499998
| 0
| 1.940287
| 0.274144
|
4-aminobutyrate aminotransferase, eukaryotic [IPR004631]
| 0.728155
| 1
| -1.105482
| 0.136748
| 0.44491
| 0
| 2.099873
| 0.225106
|
40S Ribosomal protein S10 [IPR037447]
| 0.449029
| 1
| 0.225586
| 0.252926
| 0.497395
| 0
| 1.844944
| 0.271453
|
40S ribosomal protein S1/3, eukaryotes [IPR027500]
| 0.769417
| 1
| -1.0017
| 0.239989
| 0.421206
| 0
| 1.593688
| 0.266749
|
40S ribosomal protein S29/30S ribosomal protein S14 type Z [IPR039744]
| 0.447964
| 1
| 0.26361
| 0.350907
| 0.497285
| 0
| 1.606379
| 0.307806
|
40S ribosomal protein SA [IPR027504]
| 0.631068
| 1
| -0.451099
| 0.33973
| 0.482515
| 0
| 1.564204
| 0.302227
|
4F2 cell-surface antigen heavy chain [IPR042280]
| 0.342233
| 1
| 0.673384
| 0.251354
| 0.474457
| 0
| 1.742005
| 0.269372
|
5'(3')-deoxyribonucleotidase [IPR010708]
| 0.653846
| 1
| -0.455891
| 0.334115
| 0.475743
| 0
| 1.563335
| 0.282927
|
5'-3' exoribonuclease 1 [IPR016494]
| 0.453125
| 1
| 0.022063
| 0.224884
| 0.497798
| 0
| 1.868835
| 0.239141
|
5'-3' exoribonuclease [IPR027073]
| 0.747573
| 1.31068
| -0.252374
| 0.416902
| 0.598841
| 0.462772
| 1.481204
| 0.337092
|
5'-3' exoribonuclease type 2 [IPR017151]
| 0.609223
| 1
| -0.339578
| 0.322836
| 0.487924
| 0
| 1.645981
| 0.29391
|
5'-AMP-activated protein kinase subunit beta [IPR039160]
| 0.344828
| 1
| 0.628785
| 0.261138
| 0.475312
| 0
| 1.699185
| 0.277384
|
5'-AMP-activated protein kinase subunit gamma-1 [IPR039166]
| 0.285333
| 1
| 0.609871
| 0.33899
| 0.451573
| 0
| 1.449448
| 0.282561
|
5'-deoxynucleotidase YfbR/HDDC2 [IPR039356]
| 0.75
| 1
| -0.972274
| 0.191392
| 0.433013
| 0
| 1.767692
| 0.246191
|
5-formyltetrahydrofolate cyclo-ligase [IPR002698]
| 0.554455
| 1
| -0.319893
| 0.288703
| 0.497026
| 0
| 1.790152
| 0.288603
|
5-lipoxygenase-activating protein [IPR001446]
| 0.333333
| 1
| 0.668683
| 0.176666
| 0.471405
| 0
| 1.953262
| 0.227991
|
50S ribosomal protein L18Ae/60S ribosomal protein L20 and L18a [IPR028877]
| 0.48301
| 1
| 0.011194
| 0.259941
| 0.499711
| 0
| 1.832926
| 0.27363
|
50S ribosomal protein uL4 [IPR013005]
| 0.473988
| 1
| 0.25672
| 0.223308
| 0.499323
| 0
| 2.073916
| 0.258756
|
6-Phosphogluconolactonase [IPR039104]
| 0.584951
| 1
| -0.230437
| 0.312412
| 0.49273
| 0
| 1.667831
| 0.285779
|
6-phosphogluconate dehydrogenase [IPR006183]
| 0.762136
| 1
| -0.998784
| 0.262901
| 0.425775
| 0
| 1.611888
| 0.283444
|
6-phosphogluconate dehydrogenase, decarboxylating [IPR006113]
| 0.762136
| 1
| -0.998784
| 0.262901
| 0.425775
| 0
| 1.611888
| 0.283444
|
60S acidic ribosomal protein P0 [IPR030670]
| 0.856796
| 1
| -1.710514
| 0.134191
| 0.350281
| 0
| 1.62454
| 0.211101
|
60S ribosomal protein L18a/ L20, eukaryotes [IPR021138]
| 0.48301
| 1
| 0.011194
| 0.259941
| 0.499711
| 0
| 1.832926
| 0.27363
|
60S ribosomal protein L19 [IPR039547]
| 0.541262
| 1
| -0.092017
| 0.224315
| 0.498295
| 0
| 1.96744
| 0.272118
|
60S ribosomal protein L35 [IPR045059]
| 0.565534
| 1
| -0.323972
| 0.199599
| 0.495687
| 0
| 2.084787
| 0.252981
|
60S ribosomal protein L6E [IPR000915]
| 0.660194
| 1
| -0.639383
| 0.244455
| 0.473643
| 0
| 1.792656
| 0.278239
|
60kDa SS-A/Ro ribonucleoprotein [IPR040322]
| 0.717762
| 1
| -0.920892
| 0.256233
| 0.450089
| 0
| 1.650561
| 0.268137
|
A-kinase anchor protein 12 [IPR028540]
| 0.751269
| 1
| -1.354095
| 0.139861
| 0.432278
| 0
| 1.938053
| 0.219122
|
A-kinase anchor protein 13 [IPR028852]
| 0.745192
| 1
| -1.069513
| 0.218395
| 0.435753
| 0
| 1.757469
| 0.255455
|
A-kinase anchor protein 17A [IPR034355]
| 0.811644
| 1
| -1.370276
| 0.164933
| 0.390996
| 0
| 1.706195
| 0.232611
|
A-kinase anchor protein 5 [IPR042375]
| 0.833333
| 1
| -1.085062
| 0.260712
| 0.372678
| 0
| 0.971105
| 0.2237
|
A-kinase anchor protein 9/Pericentrin [IPR028745]
| 0.506667
| 1.133333
| 0.087767
| 0.243577
| 0.513117
| 0.339935
| 1.969473
| 0.284084
|
A-kinase anchoring protein 95 (AKAP95) [IPR007071]
| 1.419903
| 2.900485
| 0.545439
| 0.445737
| 0.766971
| 0.299352
| 1.058025
| 0.302163
|
A1 cistron-splicing factor, AAR2 [IPR007946]
| 0.245431
| 1
| 0.972882
| 0.251252
| 0.430342
| 0
| 1.611407
| 0.263186
|
AAA ATPase, CDC48 family [IPR005938]
| 0.788835
| 1
| -0.837635
| 0.33093
| 0.408135
| 0
| 1.361095
| 0.286921
|
ABC transporter A [IPR026082]
| 0.285714
| 1
| 1.320098
| 0.340264
| 0.451754
| 0
| 1.341666
| 0.33323
|
ABC transporter Tap-like [IPR013305]
| 0.471572
| 1.411371
| 0.894937
| 0.25429
| 0.573986
| 0.492082
| 1.792011
| 0.302718
|
End of preview.