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The dataset generation failed because of a cast error
Error code: DatasetGenerationCastError
Exception: DatasetGenerationCastError
Message: An error occurred while generating the dataset
All the data files must have the same columns, but at some point there are 4 new columns ({'pval', 'overlap', 'setsize', 'score'}) and 8 missing columns ({'pval_mean', 'setsize_mean', 'overlap_std', 'score_mean', 'score_std', 'overlap_mean', 'pval_std', 'setsize_std'}).
This happened while the csv dataset builder was generating data using
hf://datasets/ligdis/pharos_dto/fragment/C001/C001_val_log2fc/harmon.tsv (at revision 0ee4706cba2271be080ea44f6ee0ce85176c843e)
Please either edit the data files to have matching columns, or separate them into different configurations (see docs at https://hf.co/docs/hub/datasets-manual-configuration#multiple-configurations)
Traceback: Traceback (most recent call last):
File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/builder.py", line 1870, in _prepare_split_single
writer.write_table(table)
File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/arrow_writer.py", line 622, in write_table
pa_table = table_cast(pa_table, self._schema)
File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/table.py", line 2292, in table_cast
return cast_table_to_schema(table, schema)
File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/table.py", line 2240, in cast_table_to_schema
raise CastError(
datasets.table.CastError: Couldn't cast
term: string
overlap: int64
setsize: int64
score: double
pval: double
-- schema metadata --
pandas: '{"index_columns": [{"kind": "range", "name": null, "start": 0, "' + 812
to
{'term': Value(dtype='string', id=None), 'overlap_mean': Value(dtype='float64', id=None), 'setsize_mean': Value(dtype='float64', id=None), 'score_mean': Value(dtype='float64', id=None), 'pval_mean': Value(dtype='float64', id=None), 'overlap_std': Value(dtype='float64', id=None), 'setsize_std': Value(dtype='float64', id=None), 'score_std': Value(dtype='float64', id=None), 'pval_std': Value(dtype='float64', id=None)}
because column names don't match
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/src/services/worker/src/worker/job_runners/config/parquet_and_info.py", line 1420, in compute_config_parquet_and_info_response
parquet_operations = convert_to_parquet(builder)
File "/src/services/worker/src/worker/job_runners/config/parquet_and_info.py", line 1052, in convert_to_parquet
builder.download_and_prepare(
File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/builder.py", line 924, in download_and_prepare
self._download_and_prepare(
File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/builder.py", line 1000, in _download_and_prepare
self._prepare_split(split_generator, **prepare_split_kwargs)
File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/builder.py", line 1741, in _prepare_split
for job_id, done, content in self._prepare_split_single(
File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/builder.py", line 1872, in _prepare_split_single
raise DatasetGenerationCastError.from_cast_error(
datasets.exceptions.DatasetGenerationCastError: An error occurred while generating the dataset
All the data files must have the same columns, but at some point there are 4 new columns ({'pval', 'overlap', 'setsize', 'score'}) and 8 missing columns ({'pval_mean', 'setsize_mean', 'overlap_std', 'score_mean', 'score_std', 'overlap_mean', 'pval_std', 'setsize_std'}).
This happened while the csv dataset builder was generating data using
hf://datasets/ligdis/pharos_dto/fragment/C001/C001_val_log2fc/harmon.tsv (at revision 0ee4706cba2271be080ea44f6ee0ce85176c843e)
Please either edit the data files to have matching columns, or separate them into different configurations (see docs at https://hf.co/docs/hub/datasets-manual-configuration#multiple-configurations)Need help to make the dataset viewer work? Make sure to review how to configure the dataset viewer, and open a discussion for direct support.
term string | overlap_mean float64 | setsize_mean float64 | score_mean float64 | pval_mean float64 | overlap_std float64 | setsize_std float64 | score_std float64 | pval_std float64 |
|---|---|---|---|---|---|---|---|---|
1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase | 0.297619 | 1 | 0.816456 | 0.182197 | 0.457211 | 0 | 1.963377 | 0.236468 |
1,4-alpha-glucan-branching enzyme | 0.566038 | 1 | -0.246384 | 0.209612 | 0.49562 | 0 | 2.076602 | 0.257283 |
1-phosphatidylinositol 3-phosphate 5-kinase | 0.166667 | 1 | 1.310343 | 0.282718 | 0.372678 | 0 | 1.014056 | 0.249827 |
1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta-3 | 0.357143 | 1 | 0.278304 | 0.219352 | 0.479157 | 0 | 1.739891 | 0.229924 |
1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase delta-3 | 0.8 | 1 | -1.225925 | 0.24791 | 0.4 | 0 | 1.957516 | 0.298316 |
1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase gamma-1 | 0.577031 | 1 | -0.439845 | 0.274911 | 0.494031 | 0 | 1.826481 | 0.282216 |
1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase gamma-2 | 0.565217 | 1 | -0.359058 | 0.354197 | 0.495728 | 0 | 1.623524 | 0.334607 |
10 kDa heat shock protein, mitochondrial | 0.679612 | 1 | -0.80117 | 0.187707 | 0.466626 | 0 | 1.960074 | 0.239824 |
116 kDa U5 small nuclear ribonucleoprotein component | 0.924757 | 1 | -1.392233 | 0.264782 | 0.263783 | 0 | 1.06635 | 0.256985 |
14-3-3 protein beta/alpha | 0.446602 | 1 | 0.096534 | 0.329812 | 0.49714 | 0 | 1.687649 | 0.298367 |
14-3-3 protein epsilon | 0.368932 | 1 | 0.34861 | 0.29967 | 0.482515 | 0 | 1.628611 | 0.276335 |
14-3-3 protein eta | 0.419903 | 1 | 0.25223 | 0.308128 | 0.493543 | 0 | 1.626552 | 0.276507 |
14-3-3 protein gamma | 0.545679 | 1 | -0.135277 | 0.345983 | 0.497909 | 0 | 1.58532 | 0.296301 |
14-3-3 protein sigma | 0.857143 | 1 | -1.475431 | 0.251995 | 0.349927 | 0 | 0.986752 | 0.269111 |
14-3-3 protein theta | 0.635922 | 1 | -0.439385 | 0.322767 | 0.481171 | 0 | 1.574765 | 0.286697 |
14-3-3 protein zeta/delta | 0.521845 | 1 | -0.116199 | 0.349395 | 0.499523 | 0 | 1.572257 | 0.291906 |
2',3'-cyclic-nucleotide 3'-phosphodiesterase | 0.67233 | 1 | -0.509343 | 0.340862 | 0.469364 | 0 | 1.405967 | 0.278738 |
2',5'-phosphodiesterase 12 | 0.759709 | 1 | -1.011741 | 0.249164 | 0.42726 | 0 | 1.554388 | 0.262373 |
2'-5'-oligoadenylate synthase 3 | 1 | 1 | -1.166415 | 0.282292 | 0 | 0 | 0.411058 | 0.168181 |
2,4-dienoyl-CoA reductase, mitochondrial | 0.75 | 1 | -1.009745 | 0.290075 | 0.433013 | 0 | 1.947952 | 0.337554 |
2-amino-3-ketobutyrate coenzyme A ligase, mitochondrial | 0.491484 | 1 | 0.03171 | 0.309006 | 0.499927 | 0 | 1.687528 | 0.289271 |
2-hydroxyacyl-CoA lyase 1 | 0.696237 | 1 | -0.874068 | 0.227891 | 0.459882 | 0 | 1.774033 | 0.268189 |
2-methoxy-6-polyprenyl-1,4-benzoquinol methylase, mitochondrial | 0.377358 | 1 | 0.534654 | 0.192839 | 0.484726 | 0 | 2.113787 | 0.258846 |
2-oxoisovalerate dehydrogenase subunit beta, mitochondrial | 0.6 | 1 | -0.450983 | 0.155443 | 0.489898 | 0 | 2.214346 | 0.220244 |
25-hydroxycholesterol 7-alpha-hydroxylase | 0.142857 | 1 | 0.64075 | 0.292597 | 0.349927 | 0 | 1.239664 | 0.203571 |
26S proteasome non-ATPase regulatory subunit 1 | 0.679612 | 1 | -0.633432 | 0.326923 | 0.466626 | 0 | 1.462174 | 0.283044 |
26S proteasome non-ATPase regulatory subunit 12 | 0.856796 | 1 | -1.626811 | 0.172531 | 0.350281 | 0 | 1.522021 | 0.244988 |
26S proteasome non-ATPase regulatory subunit 13 | 0.616505 | 1 | -0.358137 | 0.336494 | 0.486237 | 0 | 1.552988 | 0.289821 |
26S proteasome non-ATPase regulatory subunit 14 | 0.473301 | 1 | 0.01529 | 0.344918 | 0.499287 | 0 | 1.6502 | 0.30779 |
26S proteasome non-ATPase regulatory subunit 2 | 0.645631 | 1 | -0.41244 | 0.339824 | 0.478322 | 0 | 1.538701 | 0.301814 |
26S proteasome non-ATPase regulatory subunit 3 | 0.216019 | 1 | 0.967895 | 0.315093 | 0.411528 | 0 | 1.354701 | 0.275854 |
26S proteasome non-ATPase regulatory subunit 4 | 0.68314 | 1 | -0.569236 | 0.298714 | 0.465253 | 0 | 1.674226 | 0.292298 |
26S proteasome non-ATPase regulatory subunit 7 | 0.390777 | 1 | 0.395108 | 0.32035 | 0.487924 | 0 | 1.61629 | 0.2893 |
26S proteasome non-ATPase regulatory subunit 8 | 0.514563 | 1 | -0.067347 | 0.337685 | 0.499788 | 0 | 1.644167 | 0.297264 |
26S proteasome non-ATPase regulatory subunit 9 | 0.556452 | 1 | -0.131303 | 0.224735 | 0.496803 | 0 | 2.029153 | 0.271482 |
26S proteasome regulatory subunit 10B | 0.73301 | 1 | -0.681109 | 0.308133 | 0.442387 | 0 | 1.506459 | 0.278504 |
26S proteasome regulatory subunit 4 | 0.415049 | 1 | 0.342303 | 0.36477 | 0.49273 | 0 | 1.483254 | 0.29853 |
26S proteasome regulatory subunit 6A | 0.558252 | 1 | -0.169776 | 0.359758 | 0.496595 | 0 | 1.547401 | 0.294607 |
26S proteasome regulatory subunit 6B | 0.786408 | 1 | -0.991337 | 0.271902 | 0.409842 | 0 | 1.50167 | 0.279382 |
26S proteasome regulatory subunit 7 | 0.849515 | 1 | -1.297717 | 0.226597 | 0.357547 | 0 | 1.526563 | 0.260403 |
26S proteasome regulatory subunit 8 | 0.592233 | 1 | -0.277646 | 0.36842 | 0.491419 | 0 | 1.500946 | 0.299714 |
28S ribosomal protein S11, mitochondrial | 0.489726 | 1 | -0.008182 | 0.271519 | 0.499894 | 0 | 1.888609 | 0.280717 |
28S ribosomal protein S12, mitochondrial | 0.464286 | 1 | -0.195965 | 0.30145 | 0.498723 | 0 | 2.031507 | 0.316624 |
28S ribosomal protein S14, mitochondrial | 0.356322 | 1 | 0.453453 | 0.228154 | 0.478912 | 0 | 1.917777 | 0.274355 |
28S ribosomal protein S16, mitochondrial | 0.442623 | 1 | 0.185967 | 0.258258 | 0.496697 | 0 | 1.815156 | 0.265672 |
28S ribosomal protein S18c, mitochondrial | 0.833333 | 1 | -1.114031 | 0.376076 | 0.372678 | 0 | 1.55757 | 0.307198 |
28S ribosomal protein S2, mitochondrial | 0.667532 | 1 | -0.656459 | 0.28191 | 0.471098 | 0 | 1.685756 | 0.290421 |
28S ribosomal protein S21, mitochondrial | 0.740741 | 1 | -0.989786 | 0.214577 | 0.438228 | 0 | 1.545469 | 0.226424 |
28S ribosomal protein S24, mitochondrial | 0.522727 | 1 | -0.241112 | 0.210802 | 0.499483 | 0 | 2.054822 | 0.228906 |
28S ribosomal protein S27, mitochondrial | 0.486618 | 1 | 0.083893 | 0.357742 | 0.499821 | 0 | 1.504459 | 0.291333 |
28S ribosomal protein S29, mitochondrial | 0.81068 | 1 | -1.042472 | 0.305684 | 0.391763 | 0 | 1.314334 | 0.280218 |
28S ribosomal protein S35, mitochondrial | 0.664987 | 1 | -0.666473 | 0.275475 | 0.471995 | 0 | 1.643901 | 0.280951 |
28S ribosomal protein S5, mitochondrial | 0.633495 | 1 | -0.542115 | 0.295929 | 0.48185 | 0 | 1.676225 | 0.295687 |
28S ribosomal protein S7, mitochondrial | 0.492718 | 1 | -0.005402 | 0.343617 | 0.499947 | 0 | 1.598915 | 0.290353 |
3'(2'),5'-bisphosphate nucleotidase 1 | 0.835938 | 1 | -1.588393 | 0.158664 | 0.370332 | 0 | 1.678991 | 0.238805 |
3'-5' exoribonuclease 1 | 0.801047 | 1 | -1.589748 | 0.179762 | 0.399213 | 0 | 1.722098 | 0.266037 |
3-Ketosteroid receptors | 0.291667 | 1 | 0.880229 | 0.16481 | 0.45453 | 0 | 2.01261 | 0.242443 |
3-beta-hydroxysteroid-Delta(8),Delta(7)-isomerase | 0.301587 | 1 | 1.051207 | 0.089294 | 0.458947 | 0 | 2.382839 | 0.182233 |
3-hydroxyacyl-CoA dehydrogenase type-2 | 0.847087 | 1 | -1.50976 | 0.186015 | 0.359903 | 0 | 1.47147 | 0.238634 |
3-hydroxyisobutyrate dehydrogenase, mitochondrial | 0.799007 | 1 | -1.256957 | 0.184974 | 0.400742 | 0 | 1.688132 | 0.242048 |
3-hydroxyisobutyryl-CoA hydrolase, mitochondrial | 0.76699 | 1 | -1.236645 | 0.212746 | 0.422748 | 0 | 1.641491 | 0.258541 |
3-ketoacyl-CoA thiolase, mitochondrial | 0.805825 | 1 | -1.132042 | 0.221349 | 0.395564 | 0 | 1.651786 | 0.251984 |
3-ketoacyl-CoA thiolase, peroxisomal | 0.847701 | 1 | -1.792532 | 0.117225 | 0.35931 | 0 | 1.732676 | 0.214154 |
3-mercaptopyruvate sulfurtransferase | 0.414815 | 1 | 0.312553 | 0.295958 | 0.49269 | 0 | 1.679793 | 0.282647 |
39S ribosomal protein L1, mitochondrial | 0.665049 | 1 | -0.567012 | 0.306457 | 0.471973 | 0 | 1.566985 | 0.277956 |
39S ribosomal protein L11, mitochondrial | 0.682039 | 1 | -0.682467 | 0.287135 | 0.465684 | 0 | 1.633263 | 0.27955 |
39S ribosomal protein L12, mitochondrial | 0.735437 | 1 | -0.968509 | 0.214641 | 0.4411 | 0 | 1.806785 | 0.269456 |
39S ribosomal protein L13, mitochondrial | 0.506073 | 1 | 0.018171 | 0.214224 | 0.499963 | 0 | 2.030473 | 0.26434 |
39S ribosomal protein L14, mitochondrial | 0.611979 | 1 | -0.516367 | 0.287624 | 0.487299 | 0 | 1.667561 | 0.279842 |
39S ribosomal protein L16, mitochondrial | 0.451128 | 1 | 0.092354 | 0.219408 | 0.497606 | 0 | 1.961901 | 0.257889 |
39S ribosomal protein L17, mitochondrial | 0.519737 | 1 | -0.152204 | 0.272017 | 0.49961 | 0 | 1.851432 | 0.28836 |
39S ribosomal protein L19, mitochondrial | 0.756345 | 1 | -0.908964 | 0.259421 | 0.429287 | 0 | 1.729296 | 0.286413 |
39S ribosomal protein L2, mitochondrial | 0.59447 | 1 | -0.386492 | 0.220738 | 0.490994 | 0 | 1.96996 | 0.256037 |
39S ribosomal protein L20, mitochondrial | 0.516484 | 1 | -0.061246 | 0.265179 | 0.499728 | 0 | 1.817015 | 0.271726 |
39S ribosomal protein L21, mitochondrial | 0.740554 | 1 | -0.975198 | 0.243348 | 0.438331 | 0 | 1.687949 | 0.272621 |
39S ribosomal protein L22, mitochondrial | 0.482143 | 1 | 0.07452 | 0.258818 | 0.499681 | 0 | 1.992816 | 0.289589 |
39S ribosomal protein L23, mitochondrial | 0.395062 | 1 | 0.465557 | 0.198507 | 0.488864 | 0 | 2.034323 | 0.2494 |
39S ribosomal protein L24, mitochondrial | 0.425532 | 1 | 0.211955 | 0.300302 | 0.494423 | 0 | 1.777476 | 0.296664 |
39S ribosomal protein L27, mitochondrial | 0.492537 | 1 | 0.271062 | 0.282782 | 0.499944 | 0 | 1.707358 | 0.292219 |
39S ribosomal protein L35, mitochondrial | 1 | 1 | -2.422459 | 0.039007 | 0 | 0 | 0.685521 | 0.044744 |
39S ribosomal protein L38, mitochondrial | 0.866142 | 1 | -1.582954 | 0.158996 | 0.3405 | 0 | 1.573126 | 0.229557 |
39S ribosomal protein L39, mitochondrial | 0.386861 | 1 | 0.334343 | 0.341019 | 0.487031 | 0 | 1.512824 | 0.286774 |
39S ribosomal protein L41, mitochondrial | 0.550459 | 1 | -0.330548 | 0.207788 | 0.497447 | 0 | 2.166078 | 0.263328 |
39S ribosomal protein L43, mitochondrial | 0.686275 | 1 | -0.699842 | 0.263449 | 0.464006 | 0 | 1.715422 | 0.285747 |
39S ribosomal protein L44, mitochondrial | 0.720297 | 1 | -0.71635 | 0.296378 | 0.448853 | 0 | 1.481858 | 0.277984 |
39S ribosomal protein L47, mitochondrial | 0.563187 | 1 | -0.24809 | 0.266249 | 0.495991 | 0 | 1.808203 | 0.284476 |
39S ribosomal protein L48, mitochondrial | 0.475836 | 1 | 0.051592 | 0.291471 | 0.499416 | 0 | 1.836425 | 0.281864 |
39S ribosomal protein L49, mitochondrial | 0.723077 | 1 | -0.99053 | 0.208298 | 0.447478 | 0 | 1.883316 | 0.268333 |
39S ribosomal protein L51, mitochondrial | 0.28125 | 1 | 1.004632 | 0.255093 | 0.449609 | 0 | 1.627744 | 0.266229 |
39S ribosomal protein L9, mitochondrial | 0.590123 | 1 | -0.263255 | 0.335035 | 0.491811 | 0 | 1.62017 | 0.295527 |
39S ribosomal protein S18a, mitochondrial | 0.446429 | 1 | 0.167459 | 0.179772 | 0.497122 | 0 | 2.100109 | 0.220317 |
4-aminobutyrate aminotransferase, mitochondrial | 0.728155 | 1 | -1.105482 | 0.136748 | 0.44491 | 0 | 2.099873 | 0.225106 |
4-trimethylaminobutyraldehyde dehydrogenase | 0.92233 | 1 | -1.937602 | 0.129333 | 0.267651 | 0 | 1.344004 | 0.211154 |
40S ribosomal protein S10 | 0.449029 | 1 | 0.225586 | 0.252926 | 0.497395 | 0 | 1.844944 | 0.271453 |
40S ribosomal protein S11 | 0.779126 | 1 | -1.136676 | 0.198989 | 0.414836 | 0 | 1.647359 | 0.241767 |
40S ribosomal protein S12 | 0.634568 | 1 | -0.507552 | 0.317834 | 0.481551 | 0 | 1.634328 | 0.288727 |
40S ribosomal protein S13 | 0.754854 | 1 | -0.910516 | 0.224697 | 0.430174 | 0 | 1.752422 | 0.264486 |
40S ribosomal protein S14 | 0.669903 | 1 | -0.533059 | 0.313402 | 0.470248 | 0 | 1.618894 | 0.282239 |
40S ribosomal protein S15 | 0.483784 | 1 | 0.142541 | 0.240257 | 0.499737 | 0 | 1.974837 | 0.270454 |
40S ribosomal protein S15a | 0.59466 | 1 | -0.294809 | 0.350391 | 0.490958 | 0 | 1.484039 | 0.29425 |
End of preview.