The full dataset viewer is not available (click to read why). Only showing a preview of the rows.
The dataset generation failed because of a cast error
Error code: DatasetGenerationCastError
Exception: DatasetGenerationCastError
Message: An error occurred while generating the dataset
All the data files must have the same columns, but at some point there are 4 new columns ({'pval', 'overlap', 'setsize', 'score'}) and 8 missing columns ({'pval_mean', 'setsize_mean', 'overlap_std', 'score_mean', 'score_std', 'overlap_mean', 'pval_std', 'setsize_std'}).
This happened while the csv dataset builder was generating data using
hf://datasets/ligdis/pharos_dto/fragment/C001/C001_val_log2fc/harmon.tsv (at revision 0ee4706cba2271be080ea44f6ee0ce85176c843e)
Please either edit the data files to have matching columns, or separate them into different configurations (see docs at https://hf.co/docs/hub/datasets-manual-configuration#multiple-configurations)
Traceback: Traceback (most recent call last):
File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/builder.py", line 1870, in _prepare_split_single
writer.write_table(table)
File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/arrow_writer.py", line 622, in write_table
pa_table = table_cast(pa_table, self._schema)
File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/table.py", line 2292, in table_cast
return cast_table_to_schema(table, schema)
File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/table.py", line 2240, in cast_table_to_schema
raise CastError(
datasets.table.CastError: Couldn't cast
term: string
overlap: int64
setsize: int64
score: double
pval: double
-- schema metadata --
pandas: '{"index_columns": [{"kind": "range", "name": null, "start": 0, "' + 812
to
{'term': Value(dtype='string', id=None), 'overlap_mean': Value(dtype='float64', id=None), 'setsize_mean': Value(dtype='float64', id=None), 'score_mean': Value(dtype='float64', id=None), 'pval_mean': Value(dtype='float64', id=None), 'overlap_std': Value(dtype='float64', id=None), 'setsize_std': Value(dtype='float64', id=None), 'score_std': Value(dtype='float64', id=None), 'pval_std': Value(dtype='float64', id=None)}
because column names don't match
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/src/services/worker/src/worker/job_runners/config/parquet_and_info.py", line 1420, in compute_config_parquet_and_info_response
parquet_operations = convert_to_parquet(builder)
File "/src/services/worker/src/worker/job_runners/config/parquet_and_info.py", line 1052, in convert_to_parquet
builder.download_and_prepare(
File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/builder.py", line 924, in download_and_prepare
self._download_and_prepare(
File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/builder.py", line 1000, in _download_and_prepare
self._prepare_split(split_generator, **prepare_split_kwargs)
File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/builder.py", line 1741, in _prepare_split
for job_id, done, content in self._prepare_split_single(
File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/builder.py", line 1872, in _prepare_split_single
raise DatasetGenerationCastError.from_cast_error(
datasets.exceptions.DatasetGenerationCastError: An error occurred while generating the dataset
All the data files must have the same columns, but at some point there are 4 new columns ({'pval', 'overlap', 'setsize', 'score'}) and 8 missing columns ({'pval_mean', 'setsize_mean', 'overlap_std', 'score_mean', 'score_std', 'overlap_mean', 'pval_std', 'setsize_std'}).
This happened while the csv dataset builder was generating data using
hf://datasets/ligdis/pharos_dto/fragment/C001/C001_val_log2fc/harmon.tsv (at revision 0ee4706cba2271be080ea44f6ee0ce85176c843e)
Please either edit the data files to have matching columns, or separate them into different configurations (see docs at https://hf.co/docs/hub/datasets-manual-configuration#multiple-configurations)Need help to make the dataset viewer work? Make sure to review how to configure the dataset viewer, and open a discussion for direct support.
term
string | overlap_mean
float64 | setsize_mean
float64 | score_mean
float64 | pval_mean
float64 | overlap_std
float64 | setsize_std
float64 | score_std
float64 | pval_std
float64 |
|---|---|---|---|---|---|---|---|---|
1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase
| 0.297619
| 1
| 0.816456
| 0.182197
| 0.457211
| 0
| 1.963377
| 0.236468
|
1,4-alpha-glucan-branching enzyme
| 0.566038
| 1
| -0.246384
| 0.209612
| 0.49562
| 0
| 2.076602
| 0.257283
|
1-phosphatidylinositol 3-phosphate 5-kinase
| 0.166667
| 1
| 1.310343
| 0.282718
| 0.372678
| 0
| 1.014056
| 0.249827
|
1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta-3
| 0.357143
| 1
| 0.278304
| 0.219352
| 0.479157
| 0
| 1.739891
| 0.229924
|
1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase delta-3
| 0.8
| 1
| -1.225925
| 0.24791
| 0.4
| 0
| 1.957516
| 0.298316
|
1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase gamma-1
| 0.577031
| 1
| -0.439845
| 0.274911
| 0.494031
| 0
| 1.826481
| 0.282216
|
1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase gamma-2
| 0.565217
| 1
| -0.359058
| 0.354197
| 0.495728
| 0
| 1.623524
| 0.334607
|
10 kDa heat shock protein, mitochondrial
| 0.679612
| 1
| -0.80117
| 0.187707
| 0.466626
| 0
| 1.960074
| 0.239824
|
116 kDa U5 small nuclear ribonucleoprotein component
| 0.924757
| 1
| -1.392233
| 0.264782
| 0.263783
| 0
| 1.06635
| 0.256985
|
14-3-3 protein beta/alpha
| 0.446602
| 1
| 0.096534
| 0.329812
| 0.49714
| 0
| 1.687649
| 0.298367
|
14-3-3 protein epsilon
| 0.368932
| 1
| 0.34861
| 0.29967
| 0.482515
| 0
| 1.628611
| 0.276335
|
14-3-3 protein eta
| 0.419903
| 1
| 0.25223
| 0.308128
| 0.493543
| 0
| 1.626552
| 0.276507
|
14-3-3 protein gamma
| 0.545679
| 1
| -0.135277
| 0.345983
| 0.497909
| 0
| 1.58532
| 0.296301
|
14-3-3 protein sigma
| 0.857143
| 1
| -1.475431
| 0.251995
| 0.349927
| 0
| 0.986752
| 0.269111
|
14-3-3 protein theta
| 0.635922
| 1
| -0.439385
| 0.322767
| 0.481171
| 0
| 1.574765
| 0.286697
|
14-3-3 protein zeta/delta
| 0.521845
| 1
| -0.116199
| 0.349395
| 0.499523
| 0
| 1.572257
| 0.291906
|
2',3'-cyclic-nucleotide 3'-phosphodiesterase
| 0.67233
| 1
| -0.509343
| 0.340862
| 0.469364
| 0
| 1.405967
| 0.278738
|
2',5'-phosphodiesterase 12
| 0.759709
| 1
| -1.011741
| 0.249164
| 0.42726
| 0
| 1.554388
| 0.262373
|
2'-5'-oligoadenylate synthase 3
| 1
| 1
| -1.166415
| 0.282292
| 0
| 0
| 0.411058
| 0.168181
|
2,4-dienoyl-CoA reductase, mitochondrial
| 0.75
| 1
| -1.009745
| 0.290075
| 0.433013
| 0
| 1.947952
| 0.337554
|
2-amino-3-ketobutyrate coenzyme A ligase, mitochondrial
| 0.491484
| 1
| 0.03171
| 0.309006
| 0.499927
| 0
| 1.687528
| 0.289271
|
2-hydroxyacyl-CoA lyase 1
| 0.696237
| 1
| -0.874068
| 0.227891
| 0.459882
| 0
| 1.774033
| 0.268189
|
2-methoxy-6-polyprenyl-1,4-benzoquinol methylase, mitochondrial
| 0.377358
| 1
| 0.534654
| 0.192839
| 0.484726
| 0
| 2.113787
| 0.258846
|
2-oxoisovalerate dehydrogenase subunit beta, mitochondrial
| 0.6
| 1
| -0.450983
| 0.155443
| 0.489898
| 0
| 2.214346
| 0.220244
|
25-hydroxycholesterol 7-alpha-hydroxylase
| 0.142857
| 1
| 0.64075
| 0.292597
| 0.349927
| 0
| 1.239664
| 0.203571
|
26S proteasome non-ATPase regulatory subunit 1
| 0.679612
| 1
| -0.633432
| 0.326923
| 0.466626
| 0
| 1.462174
| 0.283044
|
26S proteasome non-ATPase regulatory subunit 12
| 0.856796
| 1
| -1.626811
| 0.172531
| 0.350281
| 0
| 1.522021
| 0.244988
|
26S proteasome non-ATPase regulatory subunit 13
| 0.616505
| 1
| -0.358137
| 0.336494
| 0.486237
| 0
| 1.552988
| 0.289821
|
26S proteasome non-ATPase regulatory subunit 14
| 0.473301
| 1
| 0.01529
| 0.344918
| 0.499287
| 0
| 1.6502
| 0.30779
|
26S proteasome non-ATPase regulatory subunit 2
| 0.645631
| 1
| -0.41244
| 0.339824
| 0.478322
| 0
| 1.538701
| 0.301814
|
26S proteasome non-ATPase regulatory subunit 3
| 0.216019
| 1
| 0.967895
| 0.315093
| 0.411528
| 0
| 1.354701
| 0.275854
|
26S proteasome non-ATPase regulatory subunit 4
| 0.68314
| 1
| -0.569236
| 0.298714
| 0.465253
| 0
| 1.674226
| 0.292298
|
26S proteasome non-ATPase regulatory subunit 7
| 0.390777
| 1
| 0.395108
| 0.32035
| 0.487924
| 0
| 1.61629
| 0.2893
|
26S proteasome non-ATPase regulatory subunit 8
| 0.514563
| 1
| -0.067347
| 0.337685
| 0.499788
| 0
| 1.644167
| 0.297264
|
26S proteasome non-ATPase regulatory subunit 9
| 0.556452
| 1
| -0.131303
| 0.224735
| 0.496803
| 0
| 2.029153
| 0.271482
|
26S proteasome regulatory subunit 10B
| 0.73301
| 1
| -0.681109
| 0.308133
| 0.442387
| 0
| 1.506459
| 0.278504
|
26S proteasome regulatory subunit 4
| 0.415049
| 1
| 0.342303
| 0.36477
| 0.49273
| 0
| 1.483254
| 0.29853
|
26S proteasome regulatory subunit 6A
| 0.558252
| 1
| -0.169776
| 0.359758
| 0.496595
| 0
| 1.547401
| 0.294607
|
26S proteasome regulatory subunit 6B
| 0.786408
| 1
| -0.991337
| 0.271902
| 0.409842
| 0
| 1.50167
| 0.279382
|
26S proteasome regulatory subunit 7
| 0.849515
| 1
| -1.297717
| 0.226597
| 0.357547
| 0
| 1.526563
| 0.260403
|
26S proteasome regulatory subunit 8
| 0.592233
| 1
| -0.277646
| 0.36842
| 0.491419
| 0
| 1.500946
| 0.299714
|
28S ribosomal protein S11, mitochondrial
| 0.489726
| 1
| -0.008182
| 0.271519
| 0.499894
| 0
| 1.888609
| 0.280717
|
28S ribosomal protein S12, mitochondrial
| 0.464286
| 1
| -0.195965
| 0.30145
| 0.498723
| 0
| 2.031507
| 0.316624
|
28S ribosomal protein S14, mitochondrial
| 0.356322
| 1
| 0.453453
| 0.228154
| 0.478912
| 0
| 1.917777
| 0.274355
|
28S ribosomal protein S16, mitochondrial
| 0.442623
| 1
| 0.185967
| 0.258258
| 0.496697
| 0
| 1.815156
| 0.265672
|
28S ribosomal protein S18c, mitochondrial
| 0.833333
| 1
| -1.114031
| 0.376076
| 0.372678
| 0
| 1.55757
| 0.307198
|
28S ribosomal protein S2, mitochondrial
| 0.667532
| 1
| -0.656459
| 0.28191
| 0.471098
| 0
| 1.685756
| 0.290421
|
28S ribosomal protein S21, mitochondrial
| 0.740741
| 1
| -0.989786
| 0.214577
| 0.438228
| 0
| 1.545469
| 0.226424
|
28S ribosomal protein S24, mitochondrial
| 0.522727
| 1
| -0.241112
| 0.210802
| 0.499483
| 0
| 2.054822
| 0.228906
|
28S ribosomal protein S27, mitochondrial
| 0.486618
| 1
| 0.083893
| 0.357742
| 0.499821
| 0
| 1.504459
| 0.291333
|
28S ribosomal protein S29, mitochondrial
| 0.81068
| 1
| -1.042472
| 0.305684
| 0.391763
| 0
| 1.314334
| 0.280218
|
28S ribosomal protein S35, mitochondrial
| 0.664987
| 1
| -0.666473
| 0.275475
| 0.471995
| 0
| 1.643901
| 0.280951
|
28S ribosomal protein S5, mitochondrial
| 0.633495
| 1
| -0.542115
| 0.295929
| 0.48185
| 0
| 1.676225
| 0.295687
|
28S ribosomal protein S7, mitochondrial
| 0.492718
| 1
| -0.005402
| 0.343617
| 0.499947
| 0
| 1.598915
| 0.290353
|
3'(2'),5'-bisphosphate nucleotidase 1
| 0.835938
| 1
| -1.588393
| 0.158664
| 0.370332
| 0
| 1.678991
| 0.238805
|
3'-5' exoribonuclease 1
| 0.801047
| 1
| -1.589748
| 0.179762
| 0.399213
| 0
| 1.722098
| 0.266037
|
3-Ketosteroid receptors
| 0.291667
| 1
| 0.880229
| 0.16481
| 0.45453
| 0
| 2.01261
| 0.242443
|
3-beta-hydroxysteroid-Delta(8),Delta(7)-isomerase
| 0.301587
| 1
| 1.051207
| 0.089294
| 0.458947
| 0
| 2.382839
| 0.182233
|
3-hydroxyacyl-CoA dehydrogenase type-2
| 0.847087
| 1
| -1.50976
| 0.186015
| 0.359903
| 0
| 1.47147
| 0.238634
|
3-hydroxyisobutyrate dehydrogenase, mitochondrial
| 0.799007
| 1
| -1.256957
| 0.184974
| 0.400742
| 0
| 1.688132
| 0.242048
|
3-hydroxyisobutyryl-CoA hydrolase, mitochondrial
| 0.76699
| 1
| -1.236645
| 0.212746
| 0.422748
| 0
| 1.641491
| 0.258541
|
3-ketoacyl-CoA thiolase, mitochondrial
| 0.805825
| 1
| -1.132042
| 0.221349
| 0.395564
| 0
| 1.651786
| 0.251984
|
3-ketoacyl-CoA thiolase, peroxisomal
| 0.847701
| 1
| -1.792532
| 0.117225
| 0.35931
| 0
| 1.732676
| 0.214154
|
3-mercaptopyruvate sulfurtransferase
| 0.414815
| 1
| 0.312553
| 0.295958
| 0.49269
| 0
| 1.679793
| 0.282647
|
39S ribosomal protein L1, mitochondrial
| 0.665049
| 1
| -0.567012
| 0.306457
| 0.471973
| 0
| 1.566985
| 0.277956
|
39S ribosomal protein L11, mitochondrial
| 0.682039
| 1
| -0.682467
| 0.287135
| 0.465684
| 0
| 1.633263
| 0.27955
|
39S ribosomal protein L12, mitochondrial
| 0.735437
| 1
| -0.968509
| 0.214641
| 0.4411
| 0
| 1.806785
| 0.269456
|
39S ribosomal protein L13, mitochondrial
| 0.506073
| 1
| 0.018171
| 0.214224
| 0.499963
| 0
| 2.030473
| 0.26434
|
39S ribosomal protein L14, mitochondrial
| 0.611979
| 1
| -0.516367
| 0.287624
| 0.487299
| 0
| 1.667561
| 0.279842
|
39S ribosomal protein L16, mitochondrial
| 0.451128
| 1
| 0.092354
| 0.219408
| 0.497606
| 0
| 1.961901
| 0.257889
|
39S ribosomal protein L17, mitochondrial
| 0.519737
| 1
| -0.152204
| 0.272017
| 0.49961
| 0
| 1.851432
| 0.28836
|
39S ribosomal protein L19, mitochondrial
| 0.756345
| 1
| -0.908964
| 0.259421
| 0.429287
| 0
| 1.729296
| 0.286413
|
39S ribosomal protein L2, mitochondrial
| 0.59447
| 1
| -0.386492
| 0.220738
| 0.490994
| 0
| 1.96996
| 0.256037
|
39S ribosomal protein L20, mitochondrial
| 0.516484
| 1
| -0.061246
| 0.265179
| 0.499728
| 0
| 1.817015
| 0.271726
|
39S ribosomal protein L21, mitochondrial
| 0.740554
| 1
| -0.975198
| 0.243348
| 0.438331
| 0
| 1.687949
| 0.272621
|
39S ribosomal protein L22, mitochondrial
| 0.482143
| 1
| 0.07452
| 0.258818
| 0.499681
| 0
| 1.992816
| 0.289589
|
39S ribosomal protein L23, mitochondrial
| 0.395062
| 1
| 0.465557
| 0.198507
| 0.488864
| 0
| 2.034323
| 0.2494
|
39S ribosomal protein L24, mitochondrial
| 0.425532
| 1
| 0.211955
| 0.300302
| 0.494423
| 0
| 1.777476
| 0.296664
|
39S ribosomal protein L27, mitochondrial
| 0.492537
| 1
| 0.271062
| 0.282782
| 0.499944
| 0
| 1.707358
| 0.292219
|
39S ribosomal protein L35, mitochondrial
| 1
| 1
| -2.422459
| 0.039007
| 0
| 0
| 0.685521
| 0.044744
|
39S ribosomal protein L38, mitochondrial
| 0.866142
| 1
| -1.582954
| 0.158996
| 0.3405
| 0
| 1.573126
| 0.229557
|
39S ribosomal protein L39, mitochondrial
| 0.386861
| 1
| 0.334343
| 0.341019
| 0.487031
| 0
| 1.512824
| 0.286774
|
39S ribosomal protein L41, mitochondrial
| 0.550459
| 1
| -0.330548
| 0.207788
| 0.497447
| 0
| 2.166078
| 0.263328
|
39S ribosomal protein L43, mitochondrial
| 0.686275
| 1
| -0.699842
| 0.263449
| 0.464006
| 0
| 1.715422
| 0.285747
|
39S ribosomal protein L44, mitochondrial
| 0.720297
| 1
| -0.71635
| 0.296378
| 0.448853
| 0
| 1.481858
| 0.277984
|
39S ribosomal protein L47, mitochondrial
| 0.563187
| 1
| -0.24809
| 0.266249
| 0.495991
| 0
| 1.808203
| 0.284476
|
39S ribosomal protein L48, mitochondrial
| 0.475836
| 1
| 0.051592
| 0.291471
| 0.499416
| 0
| 1.836425
| 0.281864
|
39S ribosomal protein L49, mitochondrial
| 0.723077
| 1
| -0.99053
| 0.208298
| 0.447478
| 0
| 1.883316
| 0.268333
|
39S ribosomal protein L51, mitochondrial
| 0.28125
| 1
| 1.004632
| 0.255093
| 0.449609
| 0
| 1.627744
| 0.266229
|
39S ribosomal protein L9, mitochondrial
| 0.590123
| 1
| -0.263255
| 0.335035
| 0.491811
| 0
| 1.62017
| 0.295527
|
39S ribosomal protein S18a, mitochondrial
| 0.446429
| 1
| 0.167459
| 0.179772
| 0.497122
| 0
| 2.100109
| 0.220317
|
4-aminobutyrate aminotransferase, mitochondrial
| 0.728155
| 1
| -1.105482
| 0.136748
| 0.44491
| 0
| 2.099873
| 0.225106
|
4-trimethylaminobutyraldehyde dehydrogenase
| 0.92233
| 1
| -1.937602
| 0.129333
| 0.267651
| 0
| 1.344004
| 0.211154
|
40S ribosomal protein S10
| 0.449029
| 1
| 0.225586
| 0.252926
| 0.497395
| 0
| 1.844944
| 0.271453
|
40S ribosomal protein S11
| 0.779126
| 1
| -1.136676
| 0.198989
| 0.414836
| 0
| 1.647359
| 0.241767
|
40S ribosomal protein S12
| 0.634568
| 1
| -0.507552
| 0.317834
| 0.481551
| 0
| 1.634328
| 0.288727
|
40S ribosomal protein S13
| 0.754854
| 1
| -0.910516
| 0.224697
| 0.430174
| 0
| 1.752422
| 0.264486
|
40S ribosomal protein S14
| 0.669903
| 1
| -0.533059
| 0.313402
| 0.470248
| 0
| 1.618894
| 0.282239
|
40S ribosomal protein S15
| 0.483784
| 1
| 0.142541
| 0.240257
| 0.499737
| 0
| 1.974837
| 0.270454
|
40S ribosomal protein S15a
| 0.59466
| 1
| -0.294809
| 0.350391
| 0.490958
| 0
| 1.484039
| 0.29425
|
End of preview.