BioAssayAlign-Assay-Compound-Data / raw /DATASET_MANIFEST.json
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{
"chembl_release": "chembl_36",
"created_at": "2026-03-03T11:56:55.031299+00:00",
"file_hashes": {
"assays_sha256": "4b220df37625a4b006bb5232871c956c150648fb7eac0448b17067f76a06b7b5",
"measurements_sha256": "1c7cb702e7d694f4c4750e139f09280419ec9d5bcd115f9d0311dfe4c2985ade"
},
"normalization_rule_version": "v1",
"pubchem_snapshot_date": "2026-03-01",
"row_counts": {
"assays": 3800882,
"measurements": 323706180
},
"source_artifacts": [
{
"artifact_id": "pubchem_bioassays_tsv",
"checksum_type": "md5",
"checksum_value": "",
"filename": "bioassays.tsv.gz",
"url": "https://ftp.ncbi.nlm.nih.gov/pubchem/Bioassay/Extras/bioassays.tsv.gz"
},
{
"artifact_id": "pubchem_bioactivities_tsv",
"checksum_type": "md5",
"checksum_value": "",
"filename": "bioactivities.tsv.gz",
"url": "https://ftp.ncbi.nlm.nih.gov/pubchem/Bioassay/Extras/bioactivities.tsv.gz"
},
{
"artifact_id": "pubchem_aid2uniprot",
"checksum_type": "md5",
"checksum_value": "",
"filename": "Aid2GeneidAccessionUniProt.gz",
"url": "https://ftp.ncbi.nlm.nih.gov/pubchem/Bioassay/Extras/Aid2GeneidAccessionUniProt.gz"
},
{
"artifact_id": "pubchem_sid2cidsmiles",
"checksum_type": "md5",
"checksum_value": "",
"filename": "Sid2CidSMILES.gz",
"url": "https://ftp.ncbi.nlm.nih.gov/pubchem/Bioassay/Extras/Sid2CidSMILES.gz"
},
{
"artifact_id": "pubchem_cid_smiles",
"checksum_type": "md5",
"checksum_value": "",
"filename": "CID-SMILES.gz",
"url": "https://ftp.ncbi.nlm.nih.gov/pubchem/Compound/Extras/CID-SMILES.gz"
},
{
"artifact_id": "chembl_sqlite_tar",
"checksum_type": "md5",
"checksum_value": "",
"filename": "chembl_36_sqlite.tar.gz",
"url": "https://ftp.ebi.ac.uk/pub/databases/chembl/ChEMBLdb/latest/chembl_36_sqlite.tar.gz"
},
{
"artifact_id": "chembl_uniprot_map",
"checksum_type": "md5",
"checksum_value": "",
"filename": "chembl_uniprot_mapping.txt",
"url": "https://ftp.ebi.ac.uk/pub/databases/chembl/ChEMBLdb/latest/chembl_uniprot_mapping.txt"
},
{
"artifact_id": "chembl_schema_doc",
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"checksum_value": "",
"filename": "schema_documentation.txt",
"url": "https://ftp.ebi.ac.uk/pub/databases/chembl/ChEMBLdb/latest/schema_documentation.txt"
}
],
"training_allowed": true,
"uniprot_mapping_timestamp": "2026-03-01T00:00:00Z",
"validation": {
"activity_label_valid_enum": true,
"assay_uid_unique": true,
"canonical_smiles_coverage": 0.9920026457326209,
"canonical_smiles_coverage_gate": true,
"description_present_for_training_assays": true,
"measurement_assay_fk": true,
"missing_description_training_assays": []
},
"version": "v1",
"public_release": {
"full_raw_tables_included": true,
"note": "This public dataset includes the full frozen raw parquet pair together with the prepared compatibility-ranking subset used by the published model.",
"raw_paths": {
"assays_parquet": "raw/assays.parquet",
"measurements_parquet": "raw/measurements.parquet"
},
"prepared_subset_path": "prepared/compatibility-ranking"
}
}