Update README.md
Browse files
README.md
CHANGED
|
@@ -1,3 +1,34 @@
|
|
| 1 |
-
---
|
| 2 |
-
license: mit
|
| 3 |
-
---
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
---
|
| 2 |
+
license: mit
|
| 3 |
+
---
|
| 4 |
+
|
| 5 |
+
## π **LiTEN-FF EXP: Experimental Dataset Structure**
|
| 6 |
+
|
| 7 |
+
The **LiTEN-FF EXP** directory contains the raw experimental data and simulation inputs used for validating the LiTEN-FF model across multiple molecular systems and tasks.
|
| 8 |
+
|
| 9 |
+
```
|
| 10 |
+
LiTEN-EXP/
|
| 11 |
+
β
|
| 12 |
+
βββ ala2_free_energy/
|
| 13 |
+
βββ ala3/
|
| 14 |
+
βββ ala4_enhance_sampling/
|
| 15 |
+
βββ ala5/
|
| 16 |
+
βββ conf_opt/
|
| 17 |
+
βββ conf_search/
|
| 18 |
+
βββ geometric_cal/
|
| 19 |
+
βββ H2O/
|
| 20 |
+
βββ TorsionNet206/
|
| 21 |
+
```
|
| 22 |
+
|
| 23 |
+
---
|
| 24 |
+
|
| 25 |
+
### **Folder Descriptions**
|
| 26 |
+
|
| 27 |
+
* **ala2_free_energy** β Raw data and scripts for free energy calculations of the alanine dipeptide system.
|
| 28 |
+
* **ala3βala5** β Molecular dynamics trajectories and conformational optimization data for tripeptide to pentapeptide systems.
|
| 29 |
+
* **conf_opt** β Conformational optimization datasets, including initial and optimized geometries.
|
| 30 |
+
* **conf_search** β Data for conformational search experiments performed using LiTEN-FF.
|
| 31 |
+
* **geometric_cal** β Calculations of geometric and quantum-derived molecular properties (e.g., bond lengths, angles, partial charges).
|
| 32 |
+
* **H2O** β Molecular dynamics simulations of liquid water for performance benchmarking and validation.
|
| 33 |
+
* **TorsionNet206** β Reference dataset used for torsional energy calibration and cross-validation against high-level quantum chemical data.
|
| 34 |
+
|