lingcon commited on
Commit
4813aa7
Β·
verified Β·
1 Parent(s): a242cbf

Update README.md

Browse files
Files changed (1) hide show
  1. README.md +34 -3
README.md CHANGED
@@ -1,3 +1,34 @@
1
- ---
2
- license: mit
3
- ---
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ ---
2
+ license: mit
3
+ ---
4
+
5
+ ## πŸ“ **LiTEN-FF EXP: Experimental Dataset Structure**
6
+
7
+ The **LiTEN-FF EXP** directory contains the raw experimental data and simulation inputs used for validating the LiTEN-FF model across multiple molecular systems and tasks.
8
+
9
+ ```
10
+ LiTEN-EXP/
11
+ β”‚
12
+ β”œβ”€β”€ ala2_free_energy/
13
+ β”œβ”€β”€ ala3/
14
+ β”œβ”€β”€ ala4_enhance_sampling/
15
+ β”œβ”€β”€ ala5/
16
+ β”œβ”€β”€ conf_opt/
17
+ β”œβ”€β”€ conf_search/
18
+ β”œβ”€β”€ geometric_cal/
19
+ β”œβ”€β”€ H2O/
20
+ └── TorsionNet206/
21
+ ```
22
+
23
+ ---
24
+
25
+ ### **Folder Descriptions**
26
+
27
+ * **ala2_free_energy** β€” Raw data and scripts for free energy calculations of the alanine dipeptide system.
28
+ * **ala3–ala5** β€” Molecular dynamics trajectories and conformational optimization data for tripeptide to pentapeptide systems.
29
+ * **conf_opt** β€” Conformational optimization datasets, including initial and optimized geometries.
30
+ * **conf_search** β€” Data for conformational search experiments performed using LiTEN-FF.
31
+ * **geometric_cal** β€” Calculations of geometric and quantum-derived molecular properties (e.g., bond lengths, angles, partial charges).
32
+ * **H2O** β€” Molecular dynamics simulations of liquid water for performance benchmarking and validation.
33
+ * **TorsionNet206** β€” Reference dataset used for torsional energy calibration and cross-validation against high-level quantum chemical data.
34
+