| FROM condaforge/mambaforge:latest | |
| COPY environment.yml /tmp/environment.yml | |
| RUN mamba env create -f /tmp/environment.yml && mamba clean -afy | |
| SHELL ["mamba", "run", "-n", "metatranscriptomics", "/bin/bash", "-c"] | |
| WORKDIR /workspace | |
| COPY . /workspace/ | |
| CMD ["mamba", "run", "-n", "metatranscriptomics", "bash", "run_script.sh"] | |