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tasks/mapping-qc/Dockerfile
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FROM condaforge/mambaforge:24.9.2-0
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WORKDIR /app
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COPY run_script.sh /app/
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COPY environment.yml /app/
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RUN mamba init bash && . ~/.bashrc && mamba env create -f environment.yml && chmod +x /app/run_script.sh
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SHELL ["/bin/bash", "--login", "-c"]
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CMD ["/app/run_script.sh"]
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