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  > **A growing benchmark for evaluating LLM agents on complex bioinformatics workflows.**
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  [![Dataset on HF](https://img.shields.io/badge/Dataset-HuggingFace-yellow)](https://huggingface.co/datasets/lingzhi227/Extended-BioAgentBench)
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- [![Tasks](https://img.shields.io/badge/Tasks-23-blue)]()
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  [![Based on](https://img.shields.io/badge/Based%20on-BioAgentBench-green)](https://github.com/bioagent-bench/bioagent-bench)
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- Building on [BioAgentBench](https://arxiv.org/abs/2601.21800) (10 tasks), this benchmark adds **23 new tasks** that test LLM agents on increasingly complex, multi-tool bioinformatics pipelines. Tasks span 6 domains and range from simple linear workflows to depth-8 diamond DAGs with 16+ CLI tools.
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  **This benchmark is actively growing** — new tasks are added continuously to cover more domains, increase complexity, and push the boundaries of what AI agents can do in bioinformatics.
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@@ -21,7 +21,7 @@ Building on [BioAgentBench](https://arxiv.org/abs/2601.21800) (10 tasks), this b
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  - **Domain-specific traps**: Tasks include steps where default parameters silently produce wrong results (e.g., Tn5 shift correction in ATAC-seq, Medaka model selection for Nanopore)
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  - **Real public data**: Every task uses published datasets with ground truth generated by validated reference pipelines
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- ## Tasks (23 total)
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  | # | Task ID | Name |
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  |---|---------|------|
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  | 31 | `viral-amplicon` | Viral Amplicon Surveillance Analysis |
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  | 32 | `bisulfite-methylation` | Bisulfite Sequencing DNA Methylation Analysis |
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  | 33 | `rnaseq-isoform` | RNA-seq Isoform Assembly and Quantification |
 
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  ## Quick start
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  > **A growing benchmark for evaluating LLM agents on complex bioinformatics workflows.**
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  [![Dataset on HF](https://img.shields.io/badge/Dataset-HuggingFace-yellow)](https://huggingface.co/datasets/lingzhi227/Extended-BioAgentBench)
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+ [![Tasks](https://img.shields.io/badge/Tasks-24-blue)]()
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  [![Based on](https://img.shields.io/badge/Based%20on-BioAgentBench-green)](https://github.com/bioagent-bench/bioagent-bench)
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+ Building on [BioAgentBench](https://arxiv.org/abs/2601.21800) (10 tasks), this benchmark adds **24 new tasks** that test LLM agents on increasingly complex, multi-tool bioinformatics pipelines. Tasks span 6 domains and range from simple linear workflows to depth-8 diamond DAGs with 16+ CLI tools.
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  **This benchmark is actively growing** — new tasks are added continuously to cover more domains, increase complexity, and push the boundaries of what AI agents can do in bioinformatics.
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  - **Domain-specific traps**: Tasks include steps where default parameters silently produce wrong results (e.g., Tn5 shift correction in ATAC-seq, Medaka model selection for Nanopore)
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  - **Real public data**: Every task uses published datasets with ground truth generated by validated reference pipelines
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+ ## Tasks (24 total)
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  | # | Task ID | Name |
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  |---|---------|------|
 
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  | 31 | `viral-amplicon` | Viral Amplicon Surveillance Analysis |
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  | 32 | `bisulfite-methylation` | Bisulfite Sequencing DNA Methylation Analysis |
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  | 33 | `rnaseq-isoform` | RNA-seq Isoform Assembly and Quantification |
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+ | 34 | `ancient-dna` | Ancient DNA Authentication and Damage Assessment |
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  ## Quick start
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