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tasks/somatic-variant-calling/environment.yml
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name: somatic-variant-calling
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channels:
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- bioconda
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- conda-forge
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- defaults
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dependencies:
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- python>=3.10
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- pandas
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- fastp>=0.23
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- bwa-mem2>=2.2
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- samtools>=1.17
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- gatk4>=4.4
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- freebayes>=1.3
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- bcftools>=1.17
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- mosdepth>=0.3
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