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0000000000000000000000000000000000000000..a04307d4fd07fdcfdd1010bb3ef8aa9b14695844 --- /dev/null +++ b/interpolation.py @@ -0,0 +1,144 @@ +import numpy as np +import os +import glob +import motmetrics as mm + +from tracking_utils.evaluation import Evaluator + + +def mkdir_if_missing(d): + if not os.path.exists(d): + os.makedirs(d) + + +def eval_mota(data_root, txt_path): + accs = [] + seqs = sorted([s for s in os.listdir(data_root) if s.endswith('FRCNN')]) + #seqs = sorted([s for s in os.listdir(data_root)]) + for seq in seqs: + video_out_path = os.path.join(txt_path, seq + '.txt') + evaluator = Evaluator(data_root, seq, 'mot') + accs.append(evaluator.eval_file(video_out_path)) + metrics = mm.metrics.motchallenge_metrics + mh = mm.metrics.create() + summary = Evaluator.get_summary(accs, seqs, metrics) + strsummary = mm.io.render_summary( + summary, + formatters=mh.formatters, + namemap=mm.io.motchallenge_metric_names + ) + print(strsummary) + + +def get_mota(data_root, txt_path): + accs = [] + seqs = sorted([s for s in os.listdir(data_root) if s.endswith('FRCNN')]) + #seqs = sorted([s for s in os.listdir(data_root)]) + for seq in seqs: + video_out_path = os.path.join(txt_path, seq + '.txt') + evaluator = Evaluator(data_root, seq, 'mot') + accs.append(evaluator.eval_file(video_out_path)) + metrics = mm.metrics.motchallenge_metrics + mh = mm.metrics.create() + summary = Evaluator.get_summary(accs, seqs, metrics) + strsummary = mm.io.render_summary( + summary, + formatters=mh.formatters, + namemap=mm.io.motchallenge_metric_names + ) + mota = float(strsummary.split(' ')[-6][:-1]) + return mota + + +def write_results_score(filename, results): + save_format = '{frame},{id},{x1},{y1},{w},{h},{s},-1,-1,-1\n' + with open(filename, 'w') as f: + for i in range(results.shape[0]): + frame_data = results[i] + frame_id = int(frame_data[0]) + track_id = int(frame_data[1]) + x1, y1, w, h = frame_data[2:6] + score = frame_data[6] + line = save_format.format(frame=frame_id, id=track_id, x1=x1, y1=y1, w=w, h=h, s=-1) + f.write(line) + + +def dti(txt_path, save_path, n_min=25, n_dti=20): + seq_txts = sorted(glob.glob(os.path.join(txt_path, '*.txt'))) + for seq_txt in seq_txts: + print(seq_txt) + seq_name = seq_txt.split('\\')[-1] + seq_data = np.loadtxt(seq_txt, dtype=np.float64, delimiter=',') + min_id = int(np.min(seq_data[:, 1])) + max_id = int(np.max(seq_data[:, 1])) + seq_results = np.zeros((1, 10), dtype=np.float64) + for track_id in range(min_id, max_id + 1): + index = (seq_data[:, 1] == track_id) + tracklet = seq_data[index] + tracklet_dti = tracklet + if tracklet.shape[0] == 0: + continue + n_frame = tracklet.shape[0] + n_conf = np.sum(tracklet[:, 6] > 0.5) + if n_frame > n_min: + frames = tracklet[:, 0] + frames_dti = {} + for i in range(0, n_frame): + right_frame = frames[i] + if i > 0: + left_frame = frames[i - 1] + else: + left_frame = frames[i] + # disconnected track interpolation + if 1 < right_frame - left_frame < n_dti: + num_bi = int(right_frame - left_frame - 1) + right_bbox = tracklet[i, 2:6] + left_bbox = tracklet[i - 1, 2:6] + for j in range(1, num_bi + 1): + curr_frame = j + left_frame + curr_bbox = (curr_frame - left_frame) * (right_bbox - left_bbox) / \ + (right_frame - left_frame) + left_bbox + frames_dti[curr_frame] = curr_bbox + num_dti = len(frames_dti.keys()) + if num_dti > 0: + data_dti = np.zeros((num_dti, 10), dtype=np.float64) + for n in range(num_dti): + data_dti[n, 0] = list(frames_dti.keys())[n] + data_dti[n, 1] = track_id + data_dti[n, 2:6] = frames_dti[list(frames_dti.keys())[n]] + data_dti[n, 6:] = [1, -1, -1, -1] + tracklet_dti = np.vstack((tracklet, data_dti)) + seq_results = np.vstack((seq_results, tracklet_dti)) + save_seq_txt = os.path.join(save_path, seq_name) + seq_results = seq_results[1:] + seq_results = seq_results[seq_results[:, 0].argsort()] + write_results_score(save_seq_txt, seq_results) + + +if __name__ == '__main__': + data_root = 'D:/dataset/tracking/mot/MOT17/train' + txt_path = './results/bytetrack' + save_path = './results/dti_bytetrack' + + mkdir_if_missing(save_path) + dti(txt_path, save_path, n_min=5, n_dti=20) + print('Before DTI: ') + eval_mota(data_root, txt_path) + print('After DTI:') + eval_mota(data_root, save_path) + + ''' + mota_best = 0.0 + best_n_min = 0 + best_n_dti = 0 + for n_min in range(5, 50, 5): + for n_dti in range(5, 30, 5): + dti(txt_path, save_path, n_min, n_dti) + mota = get_mota(data_root, save_path) + if mota > mota_best: + mota_best = mota + best_n_min = n_min + best_n_dti = n_dti + print(mota_best, best_n_min, best_n_dti) + print(mota_best, best_n_min, best_n_dti) + ''' diff --git a/matlab/MOT16-04_f50.txt b/matlab/MOT16-04_f50.txt new file mode 100644 index 0000000000000000000000000000000000000000..561c3fc5611ebeb9d78f7aac53e40937a6bb3817 --- /dev/null +++ b/matlab/MOT16-04_f50.txt @@ -0,0 +1,42 @@ +9.565844535827636719e-01 +9.517722129821777344e-01 +9.434401988983154297e-01 +9.424381256103515625e-01 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a/matlab/MOT16-13_f250.txt b/matlab/MOT16-13_f250.txt new file mode 100644 index 0000000000000000000000000000000000000000..c8f1dca2092b6a39518dfaedf0009b7f9b186759 --- /dev/null +++ b/matlab/MOT16-13_f250.txt @@ -0,0 +1,17 @@ +9.231376647949218750e-01 +9.084212779998779297e-01 +8.954236507415771484e-01 +8.653736114501953125e-01 +8.527493476867675781e-01 +8.514318466186523438e-01 +8.464326858520507812e-01 +8.067240715026855469e-01 +8.008511066436767578e-01 +7.963542938232421875e-01 +7.894668579101562500e-01 +7.821791172027587891e-01 +7.812211513519287109e-01 +7.782025337219238281e-01 +2.001374959945678711e-02 +1.751923561096191406e-02 +1.539498567581176758e-02 diff --git a/matlab/MOT20-01_f100.txt b/matlab/MOT20-01_f100.txt new file mode 100644 index 0000000000000000000000000000000000000000..99930d01673a935a2eeb36c33d621c8dd8bcd2c4 --- /dev/null +++ b/matlab/MOT20-01_f100.txt @@ -0,0 +1,52 @@ +9.444153308868408203e-01 +9.356088638305664062e-01 +9.274177551269531250e-01 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+1.335558891296386719e-01 +1.020963191986083984e-01 +9.320765733718872070e-02 +7.383191585540771484e-02 +6.535232067108154297e-02 +4.063281416893005371e-02 +3.458574414253234863e-02 +2.754360437393188477e-02 +1.850811392068862915e-02 +1.356884837150573730e-02 +1.195202767848968506e-02 diff --git a/matlab/draw_conf.m b/matlab/draw_conf.m new file mode 100644 index 0000000000000000000000000000000000000000..91276cacf7c1278646d211305b970fdaf5f10bd3 --- /dev/null +++ b/matlab/draw_conf.m @@ -0,0 +1,41 @@ +headerlinesIn = 0; +delimiterIn = ''; + +MOT16_04_f50 = importdata("MOT16-04_f50.txt", delimiterIn, headerlinesIn); +MOT16_13_f250 = importdata("MOT16-13_f250.txt", delimiterIn, headerlinesIn); +MOT20_01_f100 = importdata("MOT20-01_f100.txt", delimiterIn, headerlinesIn); + +figure; +subplot(3,1,1); +plot(1:size(MOT16_04_f50,1),MOT16_04_f50) +title('MOT16-04, Frame 50'); +xlabel('Detection'); +ylabel('Conf. Score'); +[~, argmin] = min(diff(MOT16_04_f50)); +hold on; +plot(argmin, MOT16_04_f50(argmin), 'ro'); + +hold on; +subplot(3,1,2); +plot(1:size(MOT16_13_f250,1),MOT16_13_f250) +title('MOT16-13, Frame 250'); +xlabel('Detection'); +ylabel('Conf. Score'); +[~, argmin] = min(diff(MOT16_13_f250)); +hold on; +plot(argmin, MOT16_13_f250(argmin), 'ro'); + +hold on; +subplot(3,1,3); +plot(1:size(MOT20_01_f100,1),MOT20_01_f100) +title('MOT20-01, Frame 100'); +xlabel('Detection'); +ylabel('Conf. Score'); +[~, argmin] = min(diff(MOT20_01_f100)); +hold on; +plot(argmin, MOT20_01_f100(argmin), 'ro'); + +set(gcf, 'Color', 'w'); +addpath(genpath('./export_fig')); +%export_fig conf_selection.pdf; % https://github.com/altmany/export_fig + diff --git a/matlab/draw_results.m b/matlab/draw_results.m new file mode 100644 index 0000000000000000000000000000000000000000..93fe814ad629bfff67e13466a4a94b815d83bdfb --- /dev/null +++ b/matlab/draw_results.m @@ -0,0 +1,50 @@ +figure; +subplot(3,1,1); +conf = [0.2, 0.3, 0.4, 0.5, 0.6, 0.7, 0.8]; +fix_conf_idf1 = [76.5 78.1 80.0 80.4 81.6 81.9 71.1]; +fix_conf_mota = [83.3 84.6 85.7 86.3 86.4 84.0 64.3]; +fix_conf_ids = [826 731 645 564 425 294 106]; +plot(conf, fix_conf_idf1, 'r-*'); hold on; +plot(conf, ones(size(conf)) * 81.3, 'r-'); +plot(conf, fix_conf_mota, 'b-.*'); hold on; +plot(conf, ones(size(conf)) * 86.3, 'b-.'); +xlim([min(conf), max(conf)]); +xlabel('Confidence Score'); +ylabel('Performance in Percentage'); +legend('Fixed Conf. IDF1', 'Adaptive Conf. IDF1', 'Fixed Conf. MOTA', 'Adaptive Conf. MOTA'); +title('Evaluation Comparion on MOT16 Dataset'); +hold on; +subplot(3,1,2); +conf = [0.2, 0.3, 0.4, 0.5, 0.6, 0.7, 0.8]; +fix_conf_idf1 = [76.7 78.4 80.2 80.6 81.9 81.7 70.5]; +fix_conf_mota = [84.8 86.0 87.1 87.6 87.4 84.2 63.6]; +fix_conf_ids = [2613 2292 2007 1740 1308 909 324]; +plot(conf, fix_conf_idf1, 'r-*'); hold on; +plot(conf, ones(size(conf)) * 81.5, 'r-'); +plot(conf, fix_conf_mota, 'b-.*'); hold on; +plot(conf, ones(size(conf)) * 87.5, 'b-.'); +xlim([min(conf), max(conf)]); +xlabel('Confidence Score'); +ylabel('Performance in Percentage'); +legend('Fixed Conf. IDF1', 'Adaptive Conf. IDF1', 'Fixed Conf. MOTA', 'Adaptive Conf. MOTA'); +title('Evaluation Comparion on MOT17 Dataset'); +hold on; +subplot(3,1,3); +conf = [0.2, 0.3, 0.4, 0.5, 0.6, 0.7, 0.8]; +fix_conf_idf1 = [80.9 81.2 81.7 81.9 81.9 81.7 60.8]; +fix_conf_mota = [78.5 79.0 79.2 79.4 78.9 78.9 53.0]; +fix_conf_ids = [2003 1599 1291 1129 1050 934 560]; +plot(conf, fix_conf_idf1, 'r-*'); hold on; +plot(conf, ones(size(conf)) * 81.6, 'r-'); +plot(conf, fix_conf_mota, 'b-.*'); hold on; +plot(conf, ones(size(conf)) * 79.4, 'b-.'); +xlim([min(conf), max(conf)]); +xlabel('Confidence Score'); +ylabel('Performance in Percentage'); +legend('Fixed Conf. IDF1', 'Adaptive Conf. IDF1', 'Fixed Conf. MOTA', 'Adaptive Conf. MOTA'); +title('Evaluation Comparion on MOT20 Dataset'); + +set(gcf, 'Color', 'w'); +addpath(genpath('./export_fig')); +%export_fig conf_selection.pdf; % https://github.com/altmany/export_fig + diff --git a/matlab/example.py b/matlab/example.py new file mode 100644 index 0000000000000000000000000000000000000000..9c17bffe9ab3babb8d5ec87bedff38a4a81c85f0 --- /dev/null +++ b/matlab/example.py @@ -0,0 +1,14 @@ +import numpy as np + + +def descent(X, y, learning_rate=0.001, iters=100): + w = np.zeros((X.shape[1], 1)) + for i in range(iters): + grad_vec = -(X.T).dot(y - X.dot(w)) + w = w - learning_rate * grad_vec + return w + + +X = np.loadtxt("MOT16-13_f250.txt") +print(X) +# grad_vec = -(X.T).dot(y - X.dot(w)) diff --git a/mot_evaluator.py b/mot_evaluator.py new file mode 100644 index 0000000000000000000000000000000000000000..522272b85134616ff5f7717e56a8bb8a4b857f29 --- /dev/null +++ b/mot_evaluator.py @@ -0,0 +1,375 @@ +from loguru import logger + +from trackers.bytetrack.byte_tracker import BYTETracker + +import os +import numpy as np +import cv2 +import glob +import os.path as osp +import time +from tracking_utils.evaluation import Evaluator +import motmetrics as mm +import trackeval +import sys + +def write_results(filename, results): + save_format = '{frame},{id},{x1},{y1},{w},{h},{s},-1,-1,-1\n' + with open(filename, 'w') as f: + for frame_id, tlwhs, track_ids, scores in results: + for tlwh, track_id, score in zip(tlwhs, track_ids, scores): + if track_id < 0: + continue + x1, y1, w, h = tlwh + line = save_format.format(frame=frame_id, id=track_id, x1=round(x1, 1), y1=round(y1, 1), w=round(w, 1), + h=round(h, 1), s=round(score, 2)) + f.write(line) + logger.info('save results to {}'.format(filename)) + + +def get_color(idx): + idx = (idx + 1) * 50 + color = ((37 * idx) % 255, (17 * idx) % 255, (29 * idx) % 255) + + return color + + +def write_results_no_score(filename, results): + save_format = '{frame},{id},{x1},{y1},{w},{h},-1,-1,-1,-1\n' + directory = os.path.dirname(filename) # Extract the directory path from the file path + if not os.path.exists(directory): # Check if the directory exists + os.makedirs(directory) # Create the directory if it doesn't exist + with open(filename, 'w') as f: + for frame_id, tlwhs, track_ids in results: + for tlwh, track_id in zip(tlwhs, track_ids): + if track_id < 0: + continue + x1, y1, w, h = tlwh + line = save_format.format(frame=frame_id, id=track_id, x1=round(x1, 1), y1=round(y1, 1), w=round(w, 1), + h=round(h, 1)) + f.write(line) + logger.info('save results to {}'.format(filename)) + + +def mot16(root): + seqs_train = ['MOT16-02', 'MOT16-04', 'MOT16-05', 'MOT16-09', 'MOT16-10', 'MOT16-11', 'MOT16-13'] + seqs_test = ['MOT16-01', 'MOT16-03', 'MOT16-06', 'MOT16-07', 'MOT16-08', 'MOT16-12', 'MOT16-14'] + train_dir = root + '/MOT16/train' + test_dir = root + '/MOT16/test' + return train_dir, test_dir, seqs_train, seqs_test + + +def mot17(root): + seqs_train = ['MOT17-02-DPM', 'MOT17-02-FRCNN', 'MOT17-02-SDP', 'MOT17-04-DPM', 'MOT17-04-FRCNN', 'MOT17-04-SDP', + 'MOT17-05-DPM', 'MOT17-05-FRCNN', 'MOT17-05-SDP', 'MOT17-09-DPM', 'MOT17-09-FRCNN', 'MOT17-09-SDP', + 'MOT17-10-DPM', 'MOT17-10-FRCNN', 'MOT17-10-SDP', 'MOT17-11-DPM', 'MOT17-11-FRCNN', 'MOT17-11-SDP', + 'MOT17-13-DPM', 'MOT17-13-FRCNN', 'MOT17-13-SDP'] + seqs_test = ['MOT17-01-DPM', 'MOT17-01-FRCNN', 'MOT17-01-SDP', 'MOT17-03-DPM', 'MOT17-03-FRCNN', 'MOT17-03-SDP', + 'MOT17-06-DPM', 'MOT17-06-FRCNN', 'MOT17-06-SDP', 'MOT17-07-DPM', 'MOT17-07-FRCNN', 'MOT17-07-SDP', + 'MOT17-08-DPM', 'MOT17-08-FRCNN', 'MOT17-08-SDP', 'MOT17-12-DPM', 'MOT17-12-FRCNN', 'MOT17-12-SDP', + 'MOT17-14-DPM', 'MOT17-14-FRCNN', 'MOT17-14-SDP'] + train_dir = root + '/MOT17/train' + test_dir = root + '/MOT17/test' + return train_dir, test_dir, seqs_train, seqs_test + + +def dancetrack(root): + val_numbers = [4, 5, 7, 10, 14, 18, 19, 25, 26, 30, 34, 35, 41, 43, 47, 58, 63, 65, 73, 77, 79, 81, 90, 94, 97] + train_numbers = [1, 2, 6, 8, 12, 15, 16, 20, 23, 24, 27, 29, 32, 33, 37, 39, 44, 45, 49, 51, 52, 53, 55, 57, 61, 62, + 66, 68, 69, 72, 74, 75, 80, 82, 83, 86, 87, 96, 98, 99] + test_numbers = [3, 9, 11, 13, 17, 21, 22, 28, 31, 36, 38, 40, 42, 46, 48, 50, 54, 56, 59, 60, 64, 67, 70, 71, 76, + 78, 84, 85, 88, 89, 91, 92, 93, 95, 100] + seqs_train = [f"dancetrack{num:04d}" for num in train_numbers] + seqs_val = [f"dancetrack{num:04d}" for num in val_numbers] + seqs_test = [f"dancetrack{num:04d}" for num in test_numbers] + train_dir = root + '/DanceTrack/train/' + val_dir = root + '/DanceTrack/val/' + test_dir = root + '/DanceTrack/test/' + return train_dir, val_dir, test_dir, seqs_train, seqs_val, seqs_test + + +def mot20(root): + seqs_train = ['MOT20-01', 'MOT20-02', 'MOT20-03', 'MOT20-05'] + seqs_test = ['MOT20-04', 'MOT20-06', 'MOT20-07', 'MOT20-08'] + train_dir = root + '/MOT20/train' + test_dir = root + '/MOT20/test' + return train_dir, test_dir, seqs_train, seqs_test + + +def mot17_evaluate(data_root, result_dir): + train_dir, test_dir, seqs_train, seqs_test = mot17(data_root) + seqs = ["02", "04", "05", "09", "10", "11", "13"] # , "01", "03", "06", "07", "08", "12", "14"] + sub_seqs = ["DPM", "SDP", "FRCNN"] + for seq in seqs: + input_file = result_dir + "/MOT16-" + seq + ".txt" + for sub_seq in sub_seqs: + output_file = result_dir + "/MOT17-" + seq + "-" + sub_seq + ".txt" + with open(input_file) as f: + with open(output_file, "w") as f1: + for line in f: + f1.write(line) + # evaluate_motmetrics(train_dir, result_dir, seqs_train) + evaluate_trackeval(seqs_train, train_dir, result_dir) + + +def evaluate_motmetrics(train_dir, result_dir, seqs_train): + accs = [] + for seq in seqs_train: + # eval + logger.info('Evaluate seq: {}'.format(seq)) + evaluator = Evaluator(train_dir, seq, 'mot') + accs.append(evaluator.eval_file(os.path.join(result_dir, seq + '.txt'))) + + # get summary + metrics = mm.metrics.motchallenge_metrics + mh = mm.metrics.create() + summary = Evaluator.get_summary(accs, seqs_train, metrics) + strsummary = mm.io.render_summary( + summary, + formatters=mh.formatters, + namemap=mm.io.motchallenge_metric_names + ) + print(strsummary) + Evaluator.save_summary(summary, os.path.join(result_dir, 'summary_{}.xlsx'.format(seqs_train[0].split('-')[0]))) + with open(os.path.join(result_dir, 'summary_{}.txt'.format(seqs_train[0].split('-')[0])), 'w') as f: + f.write(strsummary) + + +def evaluate_trackeval(seqs, gt_folder, trackers_folder): + output_folder = './results/' + # List of sequences to evaluate + sequences = {seq: None for seq in seqs} + # sequences = { + # 'MOT16-02': None, + # 'MOT16-04': None, + # 'MOT16-05': None, + # 'MOT16-09': None, + # 'MOT16-10': None, + # 'MOT16-11': None, + # 'MOT16-13': None + # } + + # Configuration for the evaluation + eval_config = { + 'USE_PARALLEL': False, + 'NUM_PARALLEL_CORES': 1, + 'TRACKERS_TO_EVAL': [''], # List of trackers to evaluate + 'DATASETS_TO_EVAL': ['mot_challenge'], # List of datasets to evaluate + 'BENCHMARK': 'MOT16', # The benchmark to use (e.g., 'MOT17', 'MOT20') + # 'SPLIT_TO_EVAL': 'train', # Which split to evaluate ('train', 'test') + 'SKIP_SPLIT_FOL': True, + 'METRICS': ['CLEAR', 'HOTA', 'Identity'], # Metrics to evaluate + 'OUTPUT_FOLDER': output_folder, + 'TRACKERS_FOLDER': trackers_folder, + 'GT_FOLDER': gt_folder, + 'PRINT_CONFIG': False, # Disable printing of the configuration + 'TRACKER_SUB_FOLDER': '', + 'OUTPUT_SUB_FOLDER': '', + 'SEQ_INFO': sequences + } + + # Create an Evaluator + evaluator = trackeval.Evaluator(eval_config) + + # Load datasets + dataset_list = [] + for dataset in eval_config['DATASETS_TO_EVAL']: + if dataset == 'mot_challenge': + dataset_list.append(trackeval.datasets.MotChallenge2DBox(eval_config)) + else: + raise ValueError(f"Dataset {dataset} is not supported in this example.") + + # Load metrics + metrics_list = [trackeval.metrics.HOTA(eval_config), trackeval.metrics.CLEAR(eval_config), + trackeval.metrics.Identity(eval_config)] + + sys.stdout = open(os.devnull, 'w') # Suppress print output + # Run evaluation + output_res, _ = evaluator.evaluate(dataset_list, metrics_list) + sys.stdout = sys.__stdout__ # Restore stdout + com_hota = np.average(output_res['MotChallenge2DBox']['']['COMBINED_SEQ']['pedestrian']['HOTA']['HOTA']) + com_mota = output_res['MotChallenge2DBox']['']['COMBINED_SEQ']['pedestrian']['CLEAR']['MOTA'] + com_idf1 = output_res['MotChallenge2DBox']['']['COMBINED_SEQ']['pedestrian']['Identity']['IDF1'] + idsw = output_res['MotChallenge2DBox']['']['COMBINED_SEQ']['pedestrian']['CLEAR']['IDSW'] + print(trackers_folder, f"HOTA {com_hota} IDF1 {com_idf1} MOTA {com_mota} IDSW {idsw}") + + +class MOTEvaluator: + def __init__(self, args): + self.args = args + self.show_image = args.show_image + + def evaluate_BYTETrack_singclass(self, class_num, dets, img_files): + tracker = BYTETracker(self.args) + print("Starting tracking class num: ", class_num) + results = [] + n_frames = int(np.amax(dets[:, 0])) + total_time = 0 + for frame_id in range(n_frames): + img0 = cv2.imread(img_files[frame_id]) + frame_bboxes = dets[dets[:, 0] == frame_id, :][:, 1:] + start = time.time() + online_targets = tracker.update(frame_bboxes, img0) + total_time += time.time() - start + online_tlwhs = [] + online_ids = [] + for t in online_targets: + tid, tlwh = int(t[0]), t[1:] + online_tlwhs.append(tlwh) + online_ids.append(tid) + results.append((frame_id + 1, class_num, online_tlwhs, online_ids)) + print("BYTETrack FPS: ", round(1.0 / (total_time / n_frames), 2)) + return results + + def evaluate_trackers(self, args, dets_path, tracker_name="SORT"): + ########## + train_dir, test_dir, seqs_train, seqs_test = mot16(self.args.data_dir) + for video_name in seqs_train: + ################################################################################################## + if tracker_name == "SORT": + from trackers.sort.sort import Sort + tracker = Sort(det_thresh=self.args.track_thresh) + elif tracker_name == "FairMOT": + from trackers.fairmot.multitracker import JDETracker + tracker = JDETracker(self.args) + elif tracker_name == "MOTDT": + from trackers.motdt.motdt_tracker import OnlineTracker + tracker = OnlineTracker(min_cls_score=self.args.track_thresh) + elif tracker_name == "DeepOCSort": + from trackers.integrated_ocsort_embedding.ocsort import OCSort + tracker = OCSort(det_thresh=self.args.track_thresh) + elif tracker_name == "OCSort": + from trackers.ocsort.ocsort import OCSort + tracker = OCSort(det_thresh=args.track_thresh, iou_threshold=args.iou_thresh, asso_func=args.asso, + delta_t=args.deltat, inertia=args.inertia, use_byte=args.use_byte, + use_gmc=args.use_gmc) + elif tracker_name == "DeepSort": + from trackers.deepsort.deepsort import DeepSort + tracker = DeepSort(min_confidence=self.args.track_thresh) + elif tracker_name == "BYTETrack": + ori_thresh = self.args.track_thresh + if video_name == 'MOT16-05' or video_name == 'MOT16-06': + self.args.track_buffer = 14 + elif video_name == 'MOT16-13' or video_name == 'MOT16-14': + self.args.track_buffer = 25 + else: + self.args.track_buffer = 30 + if video_name == 'MOT16-01': + self.args.track_thresh = 0.65 + elif video_name == 'MOT16-06': + self.args.track_thresh = 0.65 + elif video_name == 'MOT16-12': + self.args.track_thresh = 0.7 + elif video_name == 'MOT16-14': + self.args.track_thresh = 0.67 + elif video_name in ['MOT20-06', 'MOT20-08']: + self.args.track_thresh = 0.3 + else: + self.args.track_thresh = ori_thresh + tracker = BYTETracker(self.args) + elif tracker_name == "LMB": + from trackers.joint_lmb.joint_lmb import LMB + tracker = LMB(track_thresh=self.args.track_thresh, use_feat=True) + else: + raise ValueError(f"Unknown tracker: {tracker_name}") + ################################################################################################## + print("Starting tracking sequence", video_name) + results = [] + npz_lines = np.load(dets_path + "/" + video_name + ".npz") + n_frames = int(len(npz_lines.files) / 2) + img_path = os.path.join(train_dir, video_name) + files = sorted(glob.glob(osp.join(img_path, 'img1') + '/*.jpg')) + for frame_id in range(n_frames): + img0 = cv2.imread(files[frame_id]) + # obtain detection for each frame + try: + bboxs, reidfeat = npz_lines[str(frame_id) + '_det'], npz_lines[str(frame_id) + '_feat'] + except: + bboxs, reidfeat = np.empty((0, 4)), np.empty((0, 128)) # no detection + dets = np.column_stack((bboxs, reidfeat)) + # run tracking + online_targets = tracker.update(dets, img0) + online_tlwhs = [] + online_ids = [] + online_scores = [] + for t in online_targets: + tlwh = t.tlwh + tid = int(t.track_id) + vertical = tlwh[2] / tlwh[3] > 1.6 + if tlwh[2] * tlwh[3] > self.args.min_box_area and not vertical: + online_tlwhs.append(tlwh) + online_ids.append(tid) + online_scores.append(t.score) + if self.show_image: + l, t = int(tlwh[0]), int(tlwh[1]) + r, b = int(tlwh[0] + tlwh[2]), int(tlwh[1] + tlwh[3]) + # draw bbox + color = get_color(tid) + img0 = cv2.circle(img0, (l, t), radius=8, color=color, thickness=-1) + img0 = cv2.rectangle(img0, (l, t), (r, b), color=color, thickness=2) + img0 = cv2.putText(img0, str(tid), org=(l, t), fontFace=cv2.FONT_HERSHEY_SIMPLEX, + fontScale=0.65, color=(0, 255, 255), thickness=2) + # save results + results.append((frame_id + 1, online_tlwhs, online_ids)) + if self.show_image: + str_show = 'Frame {}'.format(frame_id) + img0 = cv2.putText(img0, str_show, org=(img0.shape[1] - 400, 30), fontFace=cv2.FONT_HERSHEY_SIMPLEX, + fontScale=1, color=(255, 255, 255), thickness=2) + scale_percent = 0.6 # percent of original size + dim = (int(img0.shape[1] * scale_percent), int(img0.shape[0] * scale_percent)) + resized = cv2.resize(img0, dim, interpolation=cv2.INTER_AREA) # resize image + cv2.imshow('Image', resized) + cv2.moveWindow('Image', 200, 200) + cv2.waitKey(1) + if frame_id == n_frames - 1: + result_filename = os.path.join(self.args.result_dir, '{}.txt'.format(video_name)) + write_results_no_score(result_filename, results) + # MOT16 Evaluation + # evaluate_motmetrics(train_dir, self.args.result_dir, seqs_train) + evaluate_trackeval(seqs_train, train_dir, self.args.result_dir) + # MOT17 Evaluation + mot17_evaluate(self.args.data_dir, self.args.result_dir) + ### END + + +def get_color(idx): + idx = (idx + 1) * 50 + color = ((37 * idx) % 255, (17 * idx) % 255, (29 * idx) % 255) + + return color + + +def vdemo_from_rfile(rfile, img_folder): + tracks = np.loadtxt(rfile, delimiter=",") + # '{frame},{id},{top},{left},{w},{h},-1,-1,-1,-1\n' + files = sorted(glob.glob(img_folder + '/*.jpg')) + n_frames = len(files) + video_name = os.path.join(os.path.dirname(rfile), os.path.basename(rfile).split(".")[0] + ".mp4") + size = cv2.imread(files[0]).shape[0:2][::-1] + out = cv2.VideoWriter(video_name, cv2.VideoWriter_fourcc(*'mp4v'), 30, size) + for frame_id in range(n_frames): + img0 = cv2.imread(files[frame_id]) + frame_tracks = tracks[tracks[:, 0] == frame_id + 1] + for tt in frame_tracks: + tlwh = tt[2:6] + tid = int(tt[1]) + l, t = int(tlwh[0]), int(tlwh[1]) + r, b = int(tlwh[0] + tlwh[2]), int(tlwh[1] + tlwh[3]) + # cxy = (int(tlwh[0] + tlwh[2] / 2), int(tlwh[1] + tlwh[3] / 2)) + # draw bbox + color = get_color(tid) + # img0 = cv2.circle(img0, cxy, radius=8, color=color, thickness=-1) + img0 = cv2.rectangle(img0, (l, t), (r, b), color=color, thickness=2) + img0 = cv2.putText(img0, str(tid), org=(l, t + 15), fontFace=cv2.FONT_HERSHEY_SIMPLEX, fontScale=0.65, + color=color, thickness=2) + cv2.imshow(rfile, img0) + cv2.waitKey(1) + out.write(img0) + out.release() + + +if __name__ == "__main__": + mot17_evaluate("/media/ubuntu/2715608D71CBF6FC/datasets/mot", "./results/detector_cstrack/BYTETrack/") + # seq = "MOT16-02" + # vdemo_from_rfile(f"results/bytetrack/bytetrack/{seq}.txt", + # f"/media/ubuntu/2715608D71CBF6FC/datasets/mot/MOT16/train/{seq}/img1/") diff --git a/reid_evaluation.py b/reid_evaluation.py new file mode 100644 index 0000000000000000000000000000000000000000..697f86d997883b03719b222a35fd19685ba31ef3 --- /dev/null +++ b/reid_evaluation.py @@ -0,0 +1,97 @@ +import numpy as np +import seaborn as sns +import matplotlib.pyplot as plt +from sklearn.metrics.pairwise import cosine_similarity + + +def compute_average_similarity(detectors, seqs, conf=0.5): + for idx, detector in enumerate(detectors): + for seq in seqs: + det = np.load(f"./dets/{detector}/{seq}.npz") + nframes = int(len(det.files) / 2) + fidx = 0 + seq_mean = 0 + seq_var = 0 + for frame in range(nframes): + bbox = det[f'{frame}_det'] + reid_vectors = det[f'{frame}_feat'][bbox[:, 4] > conf] + if reid_vectors.shape[0] <= 1: + continue + similarity_matrix = cosine_similarity(reid_vectors) + # Extract upper triangle of similarity matrix (excluding diagonal) + upper_tri = similarity_matrix[np.triu_indices(len(reid_vectors), k=1)] + seq_mean += np.mean(upper_tri) # Mean pairwise similarity + seq_var += np.std(upper_tri) # Variance of similarity scores + fidx += 1 + seq_mean /= fidx + seq_var /= fidx + print(detector, seq, seq_mean, seq_var) + + +def visual_similarity(frame=100, conf=0.3): + # Create a 4x4 grid of subplots + fig, axes = plt.subplots(3, 4, figsize=(12, 7)) # Adjust figsize for clarity + axes = axes.flatten() # Flatten the 2D array of axes for easy iteration + + # Iterate over detectors and populate the heatmaps + detectors = ['detector_poi', 'detector_trades', 'detectors_yolov11', 'detector_jde', + 'detector_cstrack', 'detector_fairmot128', 'detector_gsdt', 'detector_bytetrack'] + detector_names = ['POI', 'TraDes', 'YOLOv11_SBS50', 'JDE', 'CSTrack', 'FairMOT', 'GSDT', 'YOLOX_SBS50'] + seq = "MOT16-04" + for idx, detector in enumerate(detectors): + det = np.load(f"./dets/{detector}/{seq}.npz") + # Step 1: Example ReID vectors (replace with your actual data for each detector) + bbox = det[f'{frame}_det'] + reid_vectors = det[f'{frame}_feat'][bbox[:, 4] > conf] + # Step 2: Compute the similarity matrix + similarity_matrix = cosine_similarity(reid_vectors) + # Step 3: Visualize the heatmap in the corresponding subplot + sns.heatmap(similarity_matrix, annot=False, cmap="YlGnBu", vmin=0, vmax=1, ax=axes[idx]) + axes[idx].set_title(f"{seq}, {detector_names[idx]}") + # axes[idx].set_xlabel("Vector Index") + # axes[idx].set_ylabel("Vector Index") + # Step 4: Set discrete ticks (e.g., every 2nd index) + tick_indices = np.arange(0, len(reid_vectors), 2) # Show every 2nd index (0, 2, 4, 6, 8) + axes[idx].set_xticks(tick_indices) + axes[idx].set_yticks(tick_indices) + + detectors_mot20 = ['detector_cstrack', 'detector_fairmot128', 'detector_gsdt', 'detector_bytetrack'] + detectors_mot20_names = ['CSTrack', 'FairMOT', 'GSDT', 'YOLOX_SBS50'] + seq = "MOT20-05" + for idx, detector in enumerate(detectors_mot20): + det = np.load(f"./dets/{detector}/{seq}.npz") + # Step 1: Example ReID vectors (replace with your actual data for each detector) + bbox = det[f'{frame}_det'] + reid_vectors = det[f'{frame}_feat'][bbox[:, 4] > conf] + # Step 2: Compute the similarity matrix + similarity_matrix = cosine_similarity(reid_vectors) + # Step 3: Visualize the heatmap in the corresponding subplot + sns.heatmap(similarity_matrix, annot=False, cmap="YlGnBu", vmin=0, vmax=1, ax=axes[idx + len(detectors)]) + axes[idx + len(detectors)].set_title(f"{seq}, {detectors_mot20_names[idx]}") + # axes[idx].set_xlabel("Vector Index") + # axes[idx].set_ylabel("Vector Index") + # Step 4: Set discrete ticks (e.g., every 2nd index) + tick_indices = np.arange(0, len(reid_vectors), 2) # Show every 2nd index (0, 2, 4, 6, 8) + axes[idx + len(detectors)].set_xticks(tick_indices) + axes[idx + len(detectors)].set_yticks(tick_indices) + # Hide any unused subplots (if fewer than 16 detectors) + for idx in range(len(detectors) + len(detectors_mot20), len(axes)): + axes[idx].axis('off') + # Adjust layout to prevent overlap + # plt.subplots_adjust(hspace=5.5) # Default is ~0.2; increase for wider spacing + plt.tight_layout(h_pad=1.5, w_pad=2.0, rect=[0, 0, 1, 0.97]) + # Save the figure as a PDF file + plt.savefig("reid_similarity_heatmaps.pdf", format="pdf", bbox_inches="tight") + plt.show() + + +if __name__ == "__main__": + visual_similarity() + + detectors = ['detector_poi', 'detector_trades', 'detectors_yolov11', 'detector_jde', + 'detector_cstrack', 'detector_fairmot128', 'detector_gsdt', 'detector_bytetrack'] + seqs = ['MOT16-02', 'MOT16-04', 'MOT16-05', 'MOT16-09', 'MOT16-10', 'MOT16-11', 'MOT16-13'] + detectors_mot20 = ['detector_cstrack', 'detector_fairmot128', 'detector_gsdt', 'detector_bytetrack'] + seqs_mot20 = ['MOT20-01', 'MOT20-02', 'MOT20-03', 'MOT20-05'] + compute_average_similarity(detectors, seqs) + compute_average_similarity(detectors_mot20, seqs_mot20) diff --git a/track.py b/track.py new file mode 100644 index 0000000000000000000000000000000000000000..5e5b0f34a17a598af6be2d5fa56d8a16b2cba5ff --- /dev/null +++ b/track.py @@ -0,0 +1,37 @@ +import argparse +from mot_evaluator import MOTEvaluator + + +def make_parser(): + parser = argparse.ArgumentParser("Object State Eval") + parser.add_argument("--data_dir", default="/media/ubuntu/2715608D71CBF6FC/datasets/mot", type=str, help="eval seed") + parser.add_argument("--result_dir", default="./results/bytetrack", type=str, help="eval seed") + parser.add_argument("--show_image", default=False, type=bool, help="eval seed") + # tracking args + parser.add_argument("--track_thresh", type=float, default=0.3, help="detection confidence threshold") + parser.add_argument("--track_buffer", type=int, default=30, help="the frames for keep lost tracks") + parser.add_argument("--match_thresh", type=float, default=0.7, help="matching threshold for tracking") + parser.add_argument("--min-box-area", type=float, default=100, help='filter out tiny boxes') + parser.add_argument("--mot20", dest="mot20", default=False, action="store_true", help="test mot20.") + # tracking args OCSORT + parser.add_argument("--iou_thresh", type=float, default=0.3, help="the iou threshold in Sort for matching") + parser.add_argument('--asso', default="iou", help="similarity function: iou/giou/diou/ciou/ctdis") + parser.add_argument("--deltat", type=int, default=3, help="time step difference to estimate direction") + parser.add_argument("--inertia", type=float, default=0.2, help="the weight of VDC term in cost matrix") + parser.add_argument("--use_byte", type=bool, default=True, help="use BYTE association") + # add cmc for fixing the camera motion + parser.add_argument("--use_gmc", default=True, type=bool, help="use Camera Motion Compensation") + + return parser + + +if __name__ == "__main__": + args = make_parser().parse_args() + evaluator = MOTEvaluator(args) + for detector in ['detector_poi', 'detector_trades', 'detector_gsdt', 'detector_jde', 'detector_cstrack', + 'detector_fairmot128', 'detector_bytetrack', 'detectors_yolov11']: + for tracker in ['SORT', 'BYTETrack', 'OCSort', 'DeepSort', 'MOTDT', 'FairMOT', 'DeepOCSort', 'LMB']: + print(f"#################### {detector} #################### {tracker} ####################") + args.result_dir = f"./results/{detector}/{tracker}" + evaluator.evaluate_trackers(args, f"./dets/{detector}", tracker) + ############### diff --git a/trackers/bytetrack/__pycache__/basetrack.cpython-37.pyc b/trackers/bytetrack/__pycache__/basetrack.cpython-37.pyc new file mode 100644 index 0000000000000000000000000000000000000000..8ea0584b821e1db099ab002fd0427f297de6a3cd Binary files /dev/null and b/trackers/bytetrack/__pycache__/basetrack.cpython-37.pyc differ diff --git a/trackers/bytetrack/__pycache__/basetrack.cpython-38.pyc b/trackers/bytetrack/__pycache__/basetrack.cpython-38.pyc new file mode 100644 index 0000000000000000000000000000000000000000..0176038d6e0eb78dfa3fea8708b8db9f440be838 Binary files /dev/null and b/trackers/bytetrack/__pycache__/basetrack.cpython-38.pyc differ diff --git a/trackers/bytetrack/__pycache__/byte_tracker.cpython-37.pyc b/trackers/bytetrack/__pycache__/byte_tracker.cpython-37.pyc new file mode 100644 index 0000000000000000000000000000000000000000..0b0a9d3a704b1001dbdfd4d402acff6b003a5fd0 Binary files /dev/null and b/trackers/bytetrack/__pycache__/byte_tracker.cpython-37.pyc differ diff --git a/trackers/bytetrack/__pycache__/byte_tracker.cpython-38.pyc b/trackers/bytetrack/__pycache__/byte_tracker.cpython-38.pyc new file mode 100644 index 0000000000000000000000000000000000000000..51905ace0188aa6c553d9acd1f76a21a2210eb2c Binary files /dev/null and b/trackers/bytetrack/__pycache__/byte_tracker.cpython-38.pyc differ diff --git a/trackers/bytetrack/__pycache__/cmc.cpython-38.pyc b/trackers/bytetrack/__pycache__/cmc.cpython-38.pyc new file mode 100644 index 0000000000000000000000000000000000000000..aeace7874316abdb1f57cbf37d71a5612350c0ed Binary files /dev/null and b/trackers/bytetrack/__pycache__/cmc.cpython-38.pyc differ diff --git a/trackers/bytetrack/__pycache__/kalman_filter.cpython-37.pyc b/trackers/bytetrack/__pycache__/kalman_filter.cpython-37.pyc new file mode 100644 index 0000000000000000000000000000000000000000..91571fb2835de87f9dd87a74ae72f08fe12b85f7 Binary files /dev/null and b/trackers/bytetrack/__pycache__/kalman_filter.cpython-37.pyc differ diff --git a/trackers/bytetrack/__pycache__/kalman_filter.cpython-38.pyc b/trackers/bytetrack/__pycache__/kalman_filter.cpython-38.pyc new file mode 100644 index 0000000000000000000000000000000000000000..2a16321c83d6ea27df4e1e70b242fcc52892cca4 Binary files /dev/null and b/trackers/bytetrack/__pycache__/kalman_filter.cpython-38.pyc differ diff --git a/trackers/bytetrack/__pycache__/matching.cpython-37.pyc b/trackers/bytetrack/__pycache__/matching.cpython-37.pyc new file mode 100644 index 0000000000000000000000000000000000000000..55a2cbcf3aae04268fde8c0cbba6d84116715cce Binary files /dev/null and b/trackers/bytetrack/__pycache__/matching.cpython-37.pyc differ diff --git a/trackers/bytetrack/__pycache__/matching.cpython-38.pyc b/trackers/bytetrack/__pycache__/matching.cpython-38.pyc new file mode 100644 index 0000000000000000000000000000000000000000..05f33dec84d8b8f3577e913b10e1d765d841a4a7 Binary files /dev/null and b/trackers/bytetrack/__pycache__/matching.cpython-38.pyc differ diff --git a/trackers/bytetrack/basetrack.py b/trackers/bytetrack/basetrack.py new file mode 100644 index 0000000000000000000000000000000000000000..1d77bb4d3967876316244c5d24a5767ad88898aa --- /dev/null +++ b/trackers/bytetrack/basetrack.py @@ -0,0 +1,56 @@ +import numpy as np +from collections import OrderedDict + + +class TrackState(object): + New = 0 + Tracked = 1 + Lost = 2 + Removed = 3 + + +class BaseTrack(object): + _count = 0 + + track_id = 0 + is_activated = False + state = TrackState.New + + history = OrderedDict() + features = [] + curr_feature = None + score = 0 + start_frame = 0 + frame_id = 0 + time_since_update = 0 + + # multi-camera + location = (np.inf, np.inf) + + @property + def end_frame(self): + return self.frame_id + + @staticmethod + def next_id(): + BaseTrack._count += 1 + return BaseTrack._count + + @staticmethod + def init_id(): + BaseTrack._count = 0 + + def activate(self, *args): + raise NotImplementedError + + def predict(self): + raise NotImplementedError + + def update(self, *args, **kwargs): + raise NotImplementedError + + def mark_lost(self): + self.state = TrackState.Lost + + def mark_removed(self): + self.state = TrackState.Removed diff --git a/trackers/bytetrack/byte_tracker.py b/trackers/bytetrack/byte_tracker.py new file mode 100644 index 0000000000000000000000000000000000000000..bf1ba9a532e95481771c351e13dda0b0d1eae755 --- /dev/null +++ b/trackers/bytetrack/byte_tracker.py @@ -0,0 +1,366 @@ +import numpy as np + +from .kalman_filter import KalmanFilter +from . import matching +from .basetrack import BaseTrack, TrackState +from .cmc import GMC + + +class STrack(BaseTrack): + shared_kalman = KalmanFilter() + + def __init__(self, tlwh, score): + + # wait activate + self._tlwh = np.asarray(tlwh, dtype=float) + self.kalman_filter = None + self.mean, self.covariance = None, None + self.is_activated = False + + self.score = score + self.tracklet_len = 0 + + def predict(self): + mean_state = self.mean.copy() + if self.state != TrackState.Tracked: + mean_state[7] = 0 + self.mean, self.covariance = self.kalman_filter.predict(mean_state, self.covariance) + + @staticmethod + def multi_predict(stracks, H): + if len(stracks) > 0: + multi_mean = np.asarray([st.mean.copy() for st in stracks]) + multi_covariance = np.asarray([st.covariance for st in stracks]) + for i, st in enumerate(stracks): + if st.state != TrackState.Tracked: + multi_mean[i][7] = 0 + multi_mean, multi_covariance = STrack.shared_kalman.multi_predict(multi_mean, multi_covariance) + for i, (mean, cov) in enumerate(zip(multi_mean, multi_covariance)): + if H is not None: + # Apply Camera Motion Compensation using the transformation matrix J + # J = np.kron(np.eye(4, dtype=float), H[:2, :2]) + # tx, ty = H[0, 2], H[1, 2] + a11, a12, tx = H[0] + a21, a22, ty = H[1] + J = np.array([ + [a11, a12, 0, 0, 0, 0, 0, 0], # x + [a21, a22, 0, 0, 0, 0, 0, 0], # y + [0, 0, np.sqrt(a11 ** 2 + a21 ** 2), 0, 0, 0, 0, 0], # w + [0, 0, 0, np.sqrt(a12 ** 2 + a22 ** 2), 0, 0, 0, 0], # h + [0, 0, 0, 0, a11, a12, 0, 0], # dx + [0, 0, 0, 0, a21, a22, 0, 0], # dy + [0, 0, 0, 0, 0, 0, np.sqrt(a11 ** 2 + a21 ** 2), 0], # dw + [0, 0, 0, 0, 0, 0, 0, np.sqrt(a12 ** 2 + a22 ** 2)] # dh + ]) + mean = np.dot(J, mean) + np.array([tx, ty, 0, 0, 0, 0, 0, 0]) # -state + cov = J @ cov @ J.T + ##### + stracks[i].mean = mean + stracks[i].covariance = cov + + def activate(self, kalman_filter, frame_id): + """Start a new tracklet""" + self.kalman_filter = kalman_filter + self.track_id = self.next_id() + self.mean, self.covariance = self.kalman_filter.initiate(self.tlwh_to_xyah(self._tlwh)) + + self.tracklet_len = 0 + self.state = TrackState.Tracked + if frame_id == 1: + self.is_activated = True + # self.is_activated = True + self.frame_id = frame_id + self.start_frame = frame_id + + def re_activate(self, new_track, frame_id, new_id=False): + self.mean, self.covariance = self.kalman_filter.update( + self.mean, self.covariance, self.tlwh_to_xyah(new_track.tlwh) + ) + self.tracklet_len = 0 + self.state = TrackState.Tracked + self.is_activated = True + self.frame_id = frame_id + if new_id: + self.track_id = self.next_id() + self.score = new_track.score + + def update(self, new_track, frame_id): + """ + Update a matched track + :type new_track: STrack + :type frame_id: int + :type update_feature: bool + :return: + """ + self.frame_id = frame_id + self.tracklet_len += 1 + + new_tlwh = new_track.tlwh + self.mean, self.covariance = self.kalman_filter.update( + self.mean, self.covariance, self.tlwh_to_xyah(new_tlwh)) + self.state = TrackState.Tracked + self.is_activated = True + + self.score = new_track.score + + @property + # @jit(nopython=True) + def tlwh(self): + """Get current position in bounding box format `(top left x, top left y, + width, height)`. + """ + if self.mean is None: + return self._tlwh.copy() + ret = self.mean[:4].copy() + ret[2] *= ret[3] + ret[:2] -= ret[2:] / 2 + return ret + + @property + # @jit(nopython=True) + def tlbr(self): + """Convert bounding box to format `(min x, min y, max x, max y)`, i.e., + `(top left, bottom right)`. + """ + ret = self.tlwh.copy() + ret[2:] += ret[:2] + return ret + + @staticmethod + # @jit(nopython=True) + def tlwh_to_xyah(tlwh): + """Convert bounding box to format `(center x, center y, aspect ratio, + height)`, where the aspect ratio is `width / height`. + """ + ret = np.asarray(tlwh).copy() + ret[:2] += ret[2:] / 2 + ret[2] /= ret[3] + return ret + + def to_xyah(self): + return self.tlwh_to_xyah(self.tlwh) + + @staticmethod + # @jit(nopython=True) + def tlbr_to_tlwh(tlbr): + ret = np.asarray(tlbr).copy() + ret[2:] -= ret[:2] + return ret + + @staticmethod + # @jit(nopython=True) + def tlwh_to_tlbr(tlwh): + ret = np.asarray(tlwh).copy() + ret[2:] += ret[:2] + return ret + + def __repr__(self): + return 'OT_{}_({}-{})'.format(self.track_id, self.start_frame, self.end_frame) + + +class BYTETracker(object): + def __init__(self, args, frame_rate=30): + self.tracked_stracks = [] # type: list[STrack] + self.lost_stracks = [] # type: list[STrack] + self.removed_stracks = [] # type: list[STrack] + + self.frame_id = 0 + STrack.init_id() + self.args = args + # self.det_thresh = args.track_thresh + self.det_thresh = args.track_thresh + 0.1 + self.buffer_size = int(frame_rate / 30.0 * args.track_buffer) + self.max_time_lost = self.buffer_size + self.kalman_filter = KalmanFilter() + self.use_gmc = args.use_gmc + self.gmc = GMC(method="cmc", verbose=None) + self.asso_func = args.asso + + def update(self, output_results, image): + self.frame_id += 1 + activated_starcks = [] + refind_stracks = [] + lost_stracks = [] + removed_stracks = [] + + # if output_results.shape[1] == 5: + # scores = output_results[:, 4] + # bboxes = output_results[:, :4] + # else: + # output_results = output_results.cpu().numpy() + # scores = output_results[:, 4] * output_results[:, 5] + # bboxes = output_results[:, :4] # x1y1x2y2 + # img_h, img_w = img_info[0], img_info[1] + # scale = min(img_size[0] / float(img_h), img_size[1] / float(img_w)) + # bboxes /= scale + + scores = output_results[:, 4] + bboxes = output_results[:, :4] + + if len(scores) > 1: + threshold = scores[np.argmin(np.diff(scores))] + if threshold < self.det_thresh: + threshold = self.det_thresh + else: + threshold = self.det_thresh + remain_inds = scores >= threshold + inds_low = scores > 0.1 + inds_high = scores <= threshold + + # remain_inds = scores > self.args.track_thresh + # inds_low = scores > 0.1 + # inds_high = scores < self.args.track_thresh + + inds_second = np.logical_and(inds_low, inds_high) + dets_second = bboxes[inds_second] + dets = bboxes[remain_inds] + scores_keep = scores[remain_inds] + scores_second = scores[inds_second] + + if len(dets) > 0: + '''Detections''' + detections = [STrack(STrack.tlbr_to_tlwh(tlbr), s) for + (tlbr, s) in zip(dets, scores_keep)] + else: + detections = [] + + ''' Add newly detected tracklets to tracked_stracks''' + unconfirmed = [] + tracked_stracks = [] # type: list[STrack] + for track in self.tracked_stracks: + if not track.is_activated: + unconfirmed.append(track) + else: + tracked_stracks.append(track) + + ''' Step 2: First association, with high score detection boxes''' + strack_pool = joint_stracks(tracked_stracks, self.lost_stracks) + # Predict the current location with KF + H = None + if self.use_gmc: + H = self.gmc.applyCMC(image) + STrack.multi_predict(strack_pool, H) + dists = matching.iou_distance(strack_pool, detections) + if not self.args.mot20: + dists = matching.fuse_score(dists, detections) + matches, u_track, u_detection = matching.linear_assignment(dists, thresh=self.args.match_thresh) + + for itracked, idet in matches: + track = strack_pool[itracked] + det = detections[idet] + if track.state == TrackState.Tracked: + track.update(detections[idet], self.frame_id) + activated_starcks.append(track) + else: + track.re_activate(det, self.frame_id, new_id=False) + refind_stracks.append(track) + + ''' Step 3: Second association, with low score detection boxes''' + # association the untrack to the low score detections + if len(dets_second) > 0: + '''Detections''' + detections_second = [STrack(STrack.tlbr_to_tlwh(tlbr), s) for + (tlbr, s) in zip(dets_second, scores_second)] + else: + detections_second = [] + r_tracked_stracks = [strack_pool[i] for i in u_track if strack_pool[i].state == TrackState.Tracked] + dists = matching.iou_distance(r_tracked_stracks, detections_second) + matches, u_track, u_detection_second = matching.linear_assignment(dists, thresh=0.5) + for itracked, idet in matches: + track = r_tracked_stracks[itracked] + det = detections_second[idet] + if track.state == TrackState.Tracked: + track.update(det, self.frame_id) + activated_starcks.append(track) + else: + track.re_activate(det, self.frame_id, new_id=False) + refind_stracks.append(track) + + for it in u_track: + track = r_tracked_stracks[it] + if not track.state == TrackState.Lost: + track.mark_lost() + lost_stracks.append(track) + + '''Deal with unconfirmed tracks, usually tracks with only one beginning frame''' + detections = [detections[i] for i in u_detection] + dists = matching.iou_distance(unconfirmed, detections) + if not self.args.mot20: + dists = matching.fuse_score(dists, detections) + matches, u_unconfirmed, u_detection = matching.linear_assignment(dists, thresh=0.7) + for itracked, idet in matches: + unconfirmed[itracked].update(detections[idet], self.frame_id) + activated_starcks.append(unconfirmed[itracked]) + for it in u_unconfirmed: + track = unconfirmed[it] + track.mark_removed() + removed_stracks.append(track) + + """ Step 4: Init new stracks""" + for inew in u_detection: + track = detections[inew] + if track.score < self.det_thresh: + continue + track.activate(self.kalman_filter, self.frame_id) + activated_starcks.append(track) + """ Step 5: Update state""" + for track in self.lost_stracks: + if self.frame_id - track.end_frame > self.max_time_lost: + track.mark_removed() + removed_stracks.append(track) + + # print('Ramained match {} s'.format(t4-t3)) + + self.tracked_stracks = [t for t in self.tracked_stracks if t.state == TrackState.Tracked] + self.tracked_stracks = joint_stracks(self.tracked_stracks, activated_starcks) + self.tracked_stracks = joint_stracks(self.tracked_stracks, refind_stracks) + self.lost_stracks = sub_stracks(self.lost_stracks, self.tracked_stracks) + self.lost_stracks.extend(lost_stracks) + self.lost_stracks = sub_stracks(self.lost_stracks, self.removed_stracks) + self.removed_stracks.extend(removed_stracks) + self.tracked_stracks, self.lost_stracks = remove_duplicate_stracks(self.tracked_stracks, self.lost_stracks) + # get scores of lost tracks + output_stracks = [track for track in self.tracked_stracks if track.is_activated] + + return output_stracks + + +def joint_stracks(tlista, tlistb): + exists = {} + res = [] + for t in tlista: + exists[t.track_id] = 1 + res.append(t) + for t in tlistb: + tid = t.track_id + if not exists.get(tid, 0): + exists[tid] = 1 + res.append(t) + return res + + +def sub_stracks(tlista, tlistb): + stracks = {} + for t in tlista: + stracks[t.track_id] = t + for t in tlistb: + tid = t.track_id + if stracks.get(tid, 0): + del stracks[tid] + return list(stracks.values()) + + +def remove_duplicate_stracks(stracksa, stracksb): + pdist = matching.iou_distance(stracksa, stracksb) + pairs = np.where(pdist < 0.15) + dupa, dupb = list(), list() + for p, q in zip(*pairs): + timep = stracksa[p].frame_id - stracksa[p].start_frame + timeq = stracksb[q].frame_id - stracksb[q].start_frame + if timep > timeq: + dupb.append(q) + else: + dupa.append(p) + resa = [t for i, t in enumerate(stracksa) if not i in dupa] + resb = [t for i, t in enumerate(stracksb) if not i in dupb] + return resa, resb diff --git a/trackers/bytetrack/cmc.py b/trackers/bytetrack/cmc.py new file mode 100644 index 0000000000000000000000000000000000000000..736fe95887fff01fe6bdb8c3f421b5d5ba738498 --- /dev/null +++ b/trackers/bytetrack/cmc.py @@ -0,0 +1,343 @@ +import cv2 +import matplotlib.pyplot as plt +import numpy as np +import copy +import time + + +class GMC: + def __init__(self, method='cmc', downscale=2, verbose=None): + super(GMC, self).__init__() + + self.method = method + self.downscale = max(1, int(downscale)) + + if self.method == 'orb': + self.detector = cv2.FastFeatureDetector_create(20) + self.extractor = cv2.ORB_create() + self.matcher = cv2.BFMatcher(cv2.NORM_HAMMING) + + elif self.method == 'sift': + self.detector = cv2.SIFT_create(nOctaveLayers=3, contrastThreshold=0.02, edgeThreshold=20) + self.extractor = cv2.SIFT_create(nOctaveLayers=3, contrastThreshold=0.02, edgeThreshold=20) + self.matcher = cv2.BFMatcher(cv2.NORM_L2) + + elif self.method == 'ecc': + number_of_iterations = 5000 + termination_eps = 1e-6 + self.warp_mode = cv2.MOTION_EUCLIDEAN + self.criteria = (cv2.TERM_CRITERIA_EPS | cv2.TERM_CRITERIA_COUNT, number_of_iterations, termination_eps) + + elif self.method == 'sparseOptFlow': + self.feature_params = dict(maxCorners=1000, qualityLevel=0.01, minDistance=1, blockSize=3, + useHarrisDetector=False, k=0.04) + # self.gmc_file = open('GMC_results.txt', 'w') + + elif self.method == 'cmc': + self.prev_gray = None + # self.gmcFile = open("./GMC-11-2.txt", 'r') + elif self.method == 'none' or self.method == 'None': + self.method = 'none' + else: + raise ValueError("Error: Unknown CMC method:" + method) + + self.prevFrame = None + self.prevKeyPoints = None + self.prevDescriptors = None + + self.initializedFirstFrame = False + + def apply(self, raw_frame, detections=None): + if self.method == 'orb' or self.method == 'sift': + return self.applyFeaures(raw_frame, detections) + elif self.method == 'ecc': + return self.applyEcc(raw_frame, detections) + elif self.method == 'sparseOptFlow': + return self.applySparseOptFlow(raw_frame, detections) + elif self.method == 'cmc': + return self.applyFile(raw_frame, detections) + elif self.method == 'none': + return np.eye(2, 3) + else: + return np.eye(2, 3) + + def applyEcc(self, raw_frame, detections=None): + + # Initialize + height, width, _ = raw_frame.shape + frame = cv2.cvtColor(raw_frame, cv2.COLOR_BGR2GRAY) + H = np.eye(2, 3, dtype=np.float32) + + # Downscale image (TODO: consider using pyramids) + if self.downscale > 1.0: + frame = cv2.GaussianBlur(frame, (3, 3), 1.5) + frame = cv2.resize(frame, (width // self.downscale, height // self.downscale)) + width = width // self.downscale + height = height // self.downscale + + # Handle first frame + if not self.initializedFirstFrame: + # Initialize data + self.prevFrame = frame.copy() + + # Initialization done + self.initializedFirstFrame = True + + return H + + # Run the ECC algorithm. The results are stored in warp_matrix. + # (cc, H) = cv2.findTransformECC(self.prevFrame, frame, H, self.warp_mode, self.criteria) + try: + (cc, H) = cv2.findTransformECC(self.prevFrame, frame, H, self.warp_mode, self.criteria, None, 1) + except: + print('Warning: find transform failed. Set warp as identity') + + return H + + def applyFeaures(self, raw_frame, detections=None): + + # Initialize + height, width, _ = raw_frame.shape + frame = cv2.cvtColor(raw_frame, cv2.COLOR_BGR2GRAY) + H = np.eye(2, 3) + + # Downscale image (TODO: consider using pyramids) + if self.downscale > 1.0: + # frame = cv2.GaussianBlur(frame, (3, 3), 1.5) + frame = cv2.resize(frame, (width // self.downscale, height // self.downscale)) + width = width // self.downscale + height = height // self.downscale + + # find the keypoints + mask = np.zeros_like(frame) + # mask[int(0.05 * height): int(0.95 * height), int(0.05 * width): int(0.95 * width)] = 255 + mask[int(0.02 * height): int(0.98 * height), int(0.02 * width): int(0.98 * width)] = 255 + if detections is not None: + for det in detections: + tlbr = (det[:4] / self.downscale).astype(np.int_) + mask[tlbr[1]:tlbr[3], tlbr[0]:tlbr[2]] = 0 + + keypoints = self.detector.detect(frame, mask) + + # compute the descriptors + keypoints, descriptors = self.extractor.compute(frame, keypoints) + + # Handle first frame + if not self.initializedFirstFrame: + # Initialize data + self.prevFrame = frame.copy() + self.prevKeyPoints = copy.copy(keypoints) + self.prevDescriptors = copy.copy(descriptors) + + # Initialization done + self.initializedFirstFrame = True + + return H + + # Match descriptors. + knnMatches = self.matcher.knnMatch(self.prevDescriptors, descriptors, 2) + + # Filtered matches based on smallest spatial distance + matches = [] + spatialDistances = [] + + maxSpatialDistance = 0.25 * np.array([width, height]) + + # Handle empty matches case + if len(knnMatches) == 0: + # Store to next iteration + self.prevFrame = frame.copy() + self.prevKeyPoints = copy.copy(keypoints) + self.prevDescriptors = copy.copy(descriptors) + + return H + + for m, n in knnMatches: + if m.distance < 0.9 * n.distance: + prevKeyPointLocation = self.prevKeyPoints[m.queryIdx].pt + currKeyPointLocation = keypoints[m.trainIdx].pt + + spatialDistance = (prevKeyPointLocation[0] - currKeyPointLocation[0], + prevKeyPointLocation[1] - currKeyPointLocation[1]) + + if (np.abs(spatialDistance[0]) < maxSpatialDistance[0]) and \ + (np.abs(spatialDistance[1]) < maxSpatialDistance[1]): + spatialDistances.append(spatialDistance) + matches.append(m) + + meanSpatialDistances = np.mean(spatialDistances, 0) + stdSpatialDistances = np.std(spatialDistances, 0) + + inliesrs = (spatialDistances - meanSpatialDistances) < 2.5 * stdSpatialDistances + + goodMatches = [] + prevPoints = [] + currPoints = [] + for i in range(len(matches)): + if inliesrs[i, 0] and inliesrs[i, 1]: + goodMatches.append(matches[i]) + prevPoints.append(self.prevKeyPoints[matches[i].queryIdx].pt) + currPoints.append(keypoints[matches[i].trainIdx].pt) + + prevPoints = np.array(prevPoints) + currPoints = np.array(currPoints) + + # Draw the keypoint matches on the output image + if 0: + matches_img = np.hstack((self.prevFrame, frame)) + matches_img = cv2.cvtColor(matches_img, cv2.COLOR_GRAY2BGR) + W = np.size(self.prevFrame, 1) + for m in goodMatches: + prev_pt = np.array(self.prevKeyPoints[m.queryIdx].pt, dtype=np.int_) + curr_pt = np.array(keypoints[m.trainIdx].pt, dtype=np.int_) + curr_pt[0] += W + color = np.random.randint(0, 255, (3,)) + color = (int(color[0]), int(color[1]), int(color[2])) + + matches_img = cv2.line(matches_img, prev_pt, curr_pt, tuple(color), 1, cv2.LINE_AA) + matches_img = cv2.circle(matches_img, prev_pt, 2, tuple(color), -1) + matches_img = cv2.circle(matches_img, curr_pt, 2, tuple(color), -1) + + plt.figure() + plt.imshow(matches_img) + plt.show() + + # Find rigid matrix + if (np.size(prevPoints, 0) > 4) and (np.size(prevPoints, 0) == np.size(prevPoints, 0)): + H, inliesrs = cv2.estimateAffinePartial2D(prevPoints, currPoints, cv2.RANSAC) + + # Handle downscale + if self.downscale > 1.0: + H[0, 2] *= self.downscale + H[1, 2] *= self.downscale + else: + print('Warning: not enough matching points') + + # Store to next iteration + self.prevFrame = frame.copy() + self.prevKeyPoints = copy.copy(keypoints) + self.prevDescriptors = copy.copy(descriptors) + + return H + + def applySparseOptFlow(self, raw_frame, detections=None): + + t0 = time.time() + + # Initialize + height, width, _ = raw_frame.shape + frame = cv2.cvtColor(raw_frame, cv2.COLOR_BGR2GRAY) + H = np.eye(2, 3) + + # Downscale image + if self.downscale > 1.0: + # frame = cv2.GaussianBlur(frame, (3, 3), 1.5) + frame = cv2.resize(frame, (width // self.downscale, height // self.downscale)) + + # find the keypoints + keypoints = cv2.goodFeaturesToTrack(frame, mask=None, **self.feature_params) + + # Handle first frame + if not self.initializedFirstFrame: + # Initialize data + self.prevFrame = frame.copy() + self.prevKeyPoints = copy.copy(keypoints) + + # Initialization done + self.initializedFirstFrame = True + + return H + + # find correspondences + matchedKeypoints, status, err = cv2.calcOpticalFlowPyrLK(self.prevFrame, frame, self.prevKeyPoints, None) + + # leave good correspondences only + prevPoints = [] + currPoints = [] + + for i in range(len(status)): + if status[i]: + prevPoints.append(self.prevKeyPoints[i]) + currPoints.append(matchedKeypoints[i]) + + prevPoints = np.array(prevPoints) + currPoints = np.array(currPoints) + + # Find rigid matrix + if (np.size(prevPoints, 0) > 4) and (np.size(prevPoints, 0) == np.size(prevPoints, 0)): + H, inliesrs = cv2.estimateAffinePartial2D(prevPoints, currPoints, cv2.RANSAC) + + # Handle downscale + if self.downscale > 1.0: + H[0, 2] *= self.downscale + H[1, 2] *= self.downscale + else: + print('Warning: not enough matching points') + + # Store to next iteration + self.prevFrame = frame.copy() + self.prevKeyPoints = copy.copy(keypoints) + + t1 = time.time() + + # gmc_line = str(1000 * (t1 - t0)) + "\t" + str(H[0, 0]) + "\t" + str(H[0, 1]) + "\t" + str( + # H[0, 2]) + "\t" + str(H[1, 0]) + "\t" + str(H[1, 1]) + "\t" + str(H[1, 2]) + "\n" + # self.gmc_file.write(gmc_line) + + return H + + def applyFile(self, raw_frame, detections=None): + line = self.gmcFile.readline() + tokens = line.split("\t") + H = np.eye(2, 3, dtype=np.float_) + H[0, 0] = float(tokens[1]) + H[0, 1] = float(tokens[2]) + H[0, 2] = float(tokens[3]) + H[1, 0] = float(tokens[4]) + H[1, 1] = float(tokens[5]) + H[1, 2] = float(tokens[6]) + + return H + + def applyCMC(self, frame): + # Convert frame to grayscale + curr_gray = cv2.cvtColor(frame, cv2.COLOR_BGR2GRAY) + + # Handle first frame + if not self.initializedFirstFrame: + # Initialization + self.initializedFirstFrame = True + self.prev_gray = np.copy(curr_gray) + return np.eye(2, 3, dtype=np.float32) # Return identity matrix for the first frame + + # Detect feature points in previous frame + prev_pts = cv2.goodFeaturesToTrack(self.prev_gray, maxCorners=200, qualityLevel=0.01, minDistance=30, + blockSize=3) + # Calculate optical flow (i.e. track feature points) + curr_pts, status, err = cv2.calcOpticalFlowPyrLK(self.prev_gray, curr_gray, prev_pts, None) + + if curr_pts is None: + return np.eye(2, 3) # Return identity matrix if no good points are found + + # Sanity check + assert prev_pts.shape == curr_pts.shape + # Filter only valid points + idx = np.where(status == 1)[0] + prev_pts = prev_pts[idx] + curr_pts = curr_pts[idx] + # Find transformation matrix + # m, inliers = cv2.estimateAffinePartial2D(prev_pts, curr_pts) + m, inliers = cv2.estimateAffine2D(prev_pts, curr_pts) + # Update the previous frame and points + self.prev_gray = np.copy(curr_gray) + + # Determine camera movement + translation_magnitude = np.sqrt(m[0, 2] ** 2 + m[1, 2] ** 2) + scaling_factor = np.linalg.det(m[:, :2]) + + # # Check if camera has moved based on thresholds + # if translation_magnitude < 1.0 and abs(scaling_factor - 1) < 0.1: + # # print("No significant camera movement") + # return np.eye(2, 3) + + return m if m is not None else np.eye(2, 3) # If estimation fails, return identity matrix diff --git a/trackers/bytetrack/kalman_filter.py b/trackers/bytetrack/kalman_filter.py new file mode 100644 index 0000000000000000000000000000000000000000..9909be26b561ab9d8705de484176b5bc56b3b23f --- /dev/null +++ b/trackers/bytetrack/kalman_filter.py @@ -0,0 +1,270 @@ +# vim: expandtab:ts=4:sw=4 +import numpy as np +import scipy.linalg + + +""" +Table for the 0.95 quantile of the chi-square distribution with N degrees of +freedom (contains values for N=1, ..., 9). Taken from MATLAB/Octave's chi2inv +function and used as Mahalanobis gating threshold. +""" +chi2inv95 = { + 1: 3.8415, + 2: 5.9915, + 3: 7.8147, + 4: 9.4877, + 5: 11.070, + 6: 12.592, + 7: 14.067, + 8: 15.507, + 9: 16.919} + + +class KalmanFilter(object): + """ + A simple Kalman filter for tracking bounding boxes in image space. + + The 8-dimensional state space + + x, y, a, h, vx, vy, va, vh + + contains the bounding box center position (x, y), aspect ratio a, height h, + and their respective velocities. + + Object motion follows a constant velocity model. The bounding box location + (x, y, a, h) is taken as direct observation of the state space (linear + observation model). + + """ + + def __init__(self): + ndim, dt = 4, 1. + + # Create Kalman filter model matrices. + self._motion_mat = np.eye(2 * ndim, 2 * ndim) + for i in range(ndim): + self._motion_mat[i, ndim + i] = dt + self._update_mat = np.eye(ndim, 2 * ndim) + + # Motion and observation uncertainty are chosen relative to the current + # state estimate. These weights control the amount of uncertainty in + # the model. This is a bit hacky. + self._std_weight_position = 1. / 20 + self._std_weight_velocity = 1. / 160 + + def initiate(self, measurement): + """Create track from unassociated measurement. + + Parameters + ---------- + measurement : ndarray + Bounding box coordinates (x, y, a, h) with center position (x, y), + aspect ratio a, and height h. + + Returns + ------- + (ndarray, ndarray) + Returns the mean vector (8 dimensional) and covariance matrix (8x8 + dimensional) of the new track. Unobserved velocities are initialized + to 0 mean. + + """ + mean_pos = measurement + mean_vel = np.zeros_like(mean_pos) + mean = np.r_[mean_pos, mean_vel] + + std = [ + 2 * self._std_weight_position * measurement[3], + 2 * self._std_weight_position * measurement[3], + 1e-2, + 2 * self._std_weight_position * measurement[3], + 10 * self._std_weight_velocity * measurement[3], + 10 * self._std_weight_velocity * measurement[3], + 1e-5, + 10 * self._std_weight_velocity * measurement[3]] + covariance = np.diag(np.square(std)) + return mean, covariance + + def predict(self, mean, covariance): + """Run Kalman filter prediction step. + + Parameters + ---------- + mean : ndarray + The 8 dimensional mean vector of the object state at the previous + time step. + covariance : ndarray + The 8x8 dimensional covariance matrix of the object state at the + previous time step. + + Returns + ------- + (ndarray, ndarray) + Returns the mean vector and covariance matrix of the predicted + state. Unobserved velocities are initialized to 0 mean. + + """ + std_pos = [ + self._std_weight_position * mean[3], + self._std_weight_position * mean[3], + 1e-2, + self._std_weight_position * mean[3]] + std_vel = [ + self._std_weight_velocity * mean[3], + self._std_weight_velocity * mean[3], + 1e-5, + self._std_weight_velocity * mean[3]] + motion_cov = np.diag(np.square(np.r_[std_pos, std_vel])) + + #mean = np.dot(self._motion_mat, mean) + mean = np.dot(mean, self._motion_mat.T) + covariance = np.linalg.multi_dot(( + self._motion_mat, covariance, self._motion_mat.T)) + motion_cov + + return mean, covariance + + def project(self, mean, covariance): + """Project state distribution to measurement space. + + Parameters + ---------- + mean : ndarray + The state's mean vector (8 dimensional array). + covariance : ndarray + The state's covariance matrix (8x8 dimensional). + + Returns + ------- + (ndarray, ndarray) + Returns the projected mean and covariance matrix of the given state + estimate. + + """ + std = [ + self._std_weight_position * mean[3], + self._std_weight_position * mean[3], + 1e-1, + self._std_weight_position * mean[3]] + innovation_cov = np.diag(np.square(std)) + + mean = np.dot(self._update_mat, mean) + covariance = np.linalg.multi_dot(( + self._update_mat, covariance, self._update_mat.T)) + return mean, covariance + innovation_cov + + def multi_predict(self, mean, covariance): + """Run Kalman filter prediction step (Vectorized version). + Parameters + ---------- + mean : ndarray + The Nx8 dimensional mean matrix of the object states at the previous + time step. + covariance : ndarray + The Nx8x8 dimensional covariance matrics of the object states at the + previous time step. + Returns + ------- + (ndarray, ndarray) + Returns the mean vector and covariance matrix of the predicted + state. Unobserved velocities are initialized to 0 mean. + """ + std_pos = [ + self._std_weight_position * mean[:, 3], + self._std_weight_position * mean[:, 3], + 1e-2 * np.ones_like(mean[:, 3]), + self._std_weight_position * mean[:, 3]] + std_vel = [ + self._std_weight_velocity * mean[:, 3], + self._std_weight_velocity * mean[:, 3], + 1e-5 * np.ones_like(mean[:, 3]), + self._std_weight_velocity * mean[:, 3]] + sqr = np.square(np.r_[std_pos, std_vel]).T + + motion_cov = [] + for i in range(len(mean)): + motion_cov.append(np.diag(sqr[i])) + motion_cov = np.asarray(motion_cov) + + mean = np.dot(mean, self._motion_mat.T) + left = np.dot(self._motion_mat, covariance).transpose((1, 0, 2)) + covariance = np.dot(left, self._motion_mat.T) + motion_cov + + return mean, covariance + + def update(self, mean, covariance, measurement): + """Run Kalman filter correction step. + + Parameters + ---------- + mean : ndarray + The predicted state's mean vector (8 dimensional). + covariance : ndarray + The state's covariance matrix (8x8 dimensional). + measurement : ndarray + The 4 dimensional measurement vector (x, y, a, h), where (x, y) + is the center position, a the aspect ratio, and h the height of the + bounding box. + + Returns + ------- + (ndarray, ndarray) + Returns the measurement-corrected state distribution. + + """ + projected_mean, projected_cov = self.project(mean, covariance) + + chol_factor, lower = scipy.linalg.cho_factor( + projected_cov, lower=True, check_finite=False) + kalman_gain = scipy.linalg.cho_solve( + (chol_factor, lower), np.dot(covariance, self._update_mat.T).T, + check_finite=False).T + innovation = measurement - projected_mean + + new_mean = mean + np.dot(innovation, kalman_gain.T) + new_covariance = covariance - np.linalg.multi_dot(( + kalman_gain, projected_cov, kalman_gain.T)) + return new_mean, new_covariance + + def gating_distance(self, mean, covariance, measurements, + only_position=False, metric='maha'): + """Compute gating distance between state distribution and measurements. + A suitable distance threshold can be obtained from `chi2inv95`. If + `only_position` is False, the chi-square distribution has 4 degrees of + freedom, otherwise 2. + Parameters + ---------- + mean : ndarray + Mean vector over the state distribution (8 dimensional). + covariance : ndarray + Covariance of the state distribution (8x8 dimensional). + measurements : ndarray + An Nx4 dimensional matrix of N measurements, each in + format (x, y, a, h) where (x, y) is the bounding box center + position, a the aspect ratio, and h the height. + only_position : Optional[bool] + If True, distance computation is done with respect to the bounding + box center position only. + Returns + ------- + ndarray + Returns an array of length N, where the i-th element contains the + squared Mahalanobis distance between (mean, covariance) and + `measurements[i]`. + """ + mean, covariance = self.project(mean, covariance) + if only_position: + mean, covariance = mean[:2], covariance[:2, :2] + measurements = measurements[:, :2] + + d = measurements - mean + if metric == 'gaussian': + return np.sum(d * d, axis=1) + elif metric == 'maha': + cholesky_factor = np.linalg.cholesky(covariance) + z = scipy.linalg.solve_triangular( + cholesky_factor, d.T, lower=True, check_finite=False, + overwrite_b=True) + squared_maha = np.sum(z * z, axis=0) + return squared_maha + else: + raise ValueError('invalid distance metric') \ No newline at end of file diff --git a/trackers/bytetrack/matching.py b/trackers/bytetrack/matching.py new file mode 100644 index 0000000000000000000000000000000000000000..06cca8528d701226d007e66f5aff38de0ae3de0e --- /dev/null +++ b/trackers/bytetrack/matching.py @@ -0,0 +1,219 @@ +import numpy as np +import scipy +import lap +from scipy.spatial.distance import cdist + +from cython_bbox import bbox_overlaps as bbox_ious +from . import kalman_filter + + +def merge_matches(m1, m2, shape): + O,P,Q = shape + m1 = np.asarray(m1) + m2 = np.asarray(m2) + + M1 = scipy.sparse.coo_matrix((np.ones(len(m1)), (m1[:, 0], m1[:, 1])), shape=(O, P)) + M2 = scipy.sparse.coo_matrix((np.ones(len(m2)), (m2[:, 0], m2[:, 1])), shape=(P, Q)) + + mask = M1*M2 + match = mask.nonzero() + match = list(zip(match[0], match[1])) + unmatched_O = tuple(set(range(O)) - set([i for i, j in match])) + unmatched_Q = tuple(set(range(Q)) - set([j for i, j in match])) + + return match, unmatched_O, unmatched_Q + + +def _indices_to_matches(cost_matrix, indices, thresh): + matched_cost = cost_matrix[tuple(zip(*indices))] + matched_mask = (matched_cost <= thresh) + + matches = indices[matched_mask] + unmatched_a = tuple(set(range(cost_matrix.shape[0])) - set(matches[:, 0])) + unmatched_b = tuple(set(range(cost_matrix.shape[1])) - set(matches[:, 1])) + + return matches, unmatched_a, unmatched_b + + +def linear_assignment(cost_matrix, thresh): + if cost_matrix.size == 0: + return np.empty((0, 2), dtype=int), tuple(range(cost_matrix.shape[0])), tuple(range(cost_matrix.shape[1])) + matches, unmatched_a, unmatched_b = [], [], [] + cost, x, y = lap.lapjv(cost_matrix, extend_cost=True, cost_limit=thresh) + for ix, mx in enumerate(x): + if mx >= 0: + matches.append([ix, mx]) + unmatched_a = np.where(x < 0)[0] + unmatched_b = np.where(y < 0)[0] + matches = np.asarray(matches) + return matches, unmatched_a, unmatched_b + + +def ious(atlbrs, btlbrs): + """ + Compute cost based on IoU + :type atlbrs: list[tlbr] | np.ndarray + :type atlbrs: list[tlbr] | np.ndarray + + :rtype ious np.ndarray + """ + ious = np.zeros((len(atlbrs), len(btlbrs)), dtype=float) + if ious.size == 0: + return ious + + ious = bbox_ious( + np.ascontiguousarray(atlbrs, dtype=float), + np.ascontiguousarray(btlbrs, dtype=float) + ) + + return ious + + +def giou_batch(bboxes1, bboxes2): + """ + :param bbox_p: predict of bbox(N,4)(x1,y1,x2,y2) + :param bbox_g: groundtruth of bbox(N,4)(x1,y1,x2,y2) + :return: + """ + if min(len(bboxes1), len(bboxes2)) == 0: + return np.zeros((len(bboxes1), len(bboxes2)), dtype=float) + # for details should go to https://arxiv.org/pdf/1902.09630.pdf + # ensure predict's bbox form + bboxes2 = np.expand_dims(bboxes2, 0) + bboxes1 = np.expand_dims(bboxes1, 1) + + xx1 = np.maximum(bboxes1[..., 0], bboxes2[..., 0]) + yy1 = np.maximum(bboxes1[..., 1], bboxes2[..., 1]) + xx2 = np.minimum(bboxes1[..., 2], bboxes2[..., 2]) + yy2 = np.minimum(bboxes1[..., 3], bboxes2[..., 3]) + w = np.maximum(0., xx2 - xx1) + h = np.maximum(0., yy2 - yy1) + wh = w * h + union = ((bboxes1[..., 2] - bboxes1[..., 0]) * (bboxes1[..., 3] - bboxes1[..., 1]) + + (bboxes2[..., 2] - bboxes2[..., 0]) * (bboxes2[..., 3] - bboxes2[..., 1]) - wh) + iou = wh / union + + xxc1 = np.minimum(bboxes1[..., 0], bboxes2[..., 0]) + yyc1 = np.minimum(bboxes1[..., 1], bboxes2[..., 1]) + xxc2 = np.maximum(bboxes1[..., 2], bboxes2[..., 2]) + yyc2 = np.maximum(bboxes1[..., 3], bboxes2[..., 3]) + wc = xxc2 - xxc1 + hc = yyc2 - yyc1 + assert((wc > 0).all() and (hc > 0).all()) + area_enclose = wc * hc + giou = iou - (area_enclose - union) / area_enclose + giou = (giou + 1.)/2.0 # resize from (-1,1) to (0,1) + return giou + + +def iou_distance(atracks, btracks, giou=False): + """ + Compute cost based on IoU + :type atracks: list[STrack] + :type btracks: list[STrack] + + :rtype cost_matrix np.ndarray + """ + + if (len(atracks)>0 and isinstance(atracks[0], np.ndarray)) or (len(btracks) > 0 and isinstance(btracks[0], np.ndarray)): + atlbrs = atracks + btlbrs = btracks + else: + atlbrs = [track.tlbr for track in atracks] + btlbrs = [track.tlbr for track in btracks] + _ious = ious(atlbrs, btlbrs) + if giou: + _ious = giou_batch(atlbrs, btlbrs) + cost_matrix = 1 - _ious + + return cost_matrix + +def v_iou_distance(atracks, btracks): + """ + Compute cost based on IoU + :type atracks: list[STrack] + :type btracks: list[STrack] + + :rtype cost_matrix np.ndarray + """ + + if (len(atracks)>0 and isinstance(atracks[0], np.ndarray)) or (len(btracks) > 0 and isinstance(btracks[0], np.ndarray)): + atlbrs = atracks + btlbrs = btracks + else: + atlbrs = [track.tlwh_to_tlbr(track.pred_bbox) for track in atracks] + btlbrs = [track.tlwh_to_tlbr(track.pred_bbox) for track in btracks] + _ious = ious(atlbrs, btlbrs) + cost_matrix = 1 - _ious + + return cost_matrix + +def embedding_distance(tracks, detections, metric='cosine'): + """ + :param tracks: list[STrack] + :param detections: list[BaseTrack] + :param metric: + :return: cost_matrix np.ndarray + """ + + cost_matrix = np.zeros((len(tracks), len(detections)), dtype=float) + if cost_matrix.size == 0: + return cost_matrix + det_features = np.asarray([track.curr_feat for track in detections], dtype=float) + #for i, track in enumerate(tracks): + #cost_matrix[i, :] = np.maximum(0.0, cdist(track.smooth_feat.reshape(1,-1), det_features, metric)) + track_features = np.asarray([track.smooth_feat for track in tracks], dtype=float) + cost_matrix = np.maximum(0.0, cdist(track_features, det_features, metric)) # Nomalized features + return cost_matrix + + +def gate_cost_matrix(kf, cost_matrix, tracks, detections, only_position=False): + if cost_matrix.size == 0: + return cost_matrix + gating_dim = 2 if only_position else 4 + gating_threshold = kalman_filter.chi2inv95[gating_dim] + measurements = np.asarray([det.to_xyah() for det in detections]) + for row, track in enumerate(tracks): + gating_distance = kf.gating_distance( + track.mean, track.covariance, measurements, only_position) + cost_matrix[row, gating_distance > gating_threshold] = np.inf + return cost_matrix + + +def fuse_motion(kf, cost_matrix, tracks, detections, only_position=False, lambda_=0.98): + if cost_matrix.size == 0: + return cost_matrix + gating_dim = 2 if only_position else 4 + gating_threshold = kalman_filter.chi2inv95[gating_dim] + measurements = np.asarray([det.to_xyah() for det in detections]) + for row, track in enumerate(tracks): + gating_distance = kf.gating_distance( + track.mean, track.covariance, measurements, only_position, metric='maha') + cost_matrix[row, gating_distance > gating_threshold] = np.inf + cost_matrix[row] = lambda_ * cost_matrix[row] + (1 - lambda_) * gating_distance + return cost_matrix + + +def fuse_iou(cost_matrix, tracks, detections): + if cost_matrix.size == 0: + return cost_matrix + reid_sim = 1 - cost_matrix + iou_dist = iou_distance(tracks, detections) + iou_sim = 1 - iou_dist + fuse_sim = reid_sim * (1 + iou_sim) / 2 + det_scores = np.array([det.score for det in detections]) + det_scores = np.expand_dims(det_scores, axis=0).repeat(cost_matrix.shape[0], axis=0) + #fuse_sim = fuse_sim * (1 + det_scores) / 2 + fuse_cost = 1 - fuse_sim + return fuse_cost + + +def fuse_score(cost_matrix, detections): + if cost_matrix.size == 0: + return cost_matrix + iou_sim = 1 - cost_matrix + det_scores = np.array([det.score for det in detections]) + det_scores = np.expand_dims(det_scores, axis=0).repeat(cost_matrix.shape[0], axis=0) + fuse_sim = iou_sim * det_scores + fuse_cost = 1 - fuse_sim + return fuse_cost \ No newline at end of file diff --git a/trackers/deepsort/deepsort.py b/trackers/deepsort/deepsort.py new file mode 100644 index 0000000000000000000000000000000000000000..1a87db67a16d0ae4343e2f63801111aa36a88cdb --- /dev/null +++ b/trackers/deepsort/deepsort.py @@ -0,0 +1,287 @@ +import numpy as np +import cv2 +import os + +from . import kalman_filter, linear_assignment, iou_matching +from .detection import Detection +from .track import Track + + +def _cosine_distance(a, b, data_is_normalized=False): + if not data_is_normalized: + a = np.asarray(a) / np.linalg.norm(a, axis=1, keepdims=True) + b = np.asarray(b) / np.linalg.norm(b, axis=1, keepdims=True) + return 1.0 - np.dot(a, b.T) + + +def _nn_cosine_distance(x, y): + distances = _cosine_distance(x, y) + return distances.min(axis=0) + + +class Tracker: + def __init__(self, metric, max_iou_distance=0.7, max_age=70, n_init=3): + self.metric = metric + self.max_iou_distance = max_iou_distance + self.max_age = max_age + self.n_init = n_init + + self.kf = kalman_filter.KalmanFilter() + self.tracks = [] + self._next_id = 1 + + def predict(self): + """Propagate track state distributions one time step forward. + This function should be called once every time step, before `update`. + """ + for track in self.tracks: + track.predict(self.kf) + + def increment_ages(self): + for track in self.tracks: + track.increment_age() + track.mark_missed() + + def update(self, detections, classes): + """Perform measurement update and track management. + Parameters + ---------- + detections : List[deep_sort.detection.Detection] + A list of detections at the current time step. + """ + # Run matching cascade. + matches, unmatched_tracks, unmatched_detections = self._match(detections) + + # Update track set. + for track_idx, detection_idx in matches: + self.tracks[track_idx].update(self.kf, detections[detection_idx]) + for track_idx in unmatched_tracks: + self.tracks[track_idx].mark_missed() + for detection_idx in unmatched_detections: + self._initiate_track(detections[detection_idx], classes[detection_idx].item()) + self.tracks = [t for t in self.tracks if not t.is_deleted()] + + # Update distance metric. + active_targets = [t.track_id for t in self.tracks if t.is_confirmed()] + features, targets = [], [] + for track in self.tracks: + if not track.is_confirmed(): + continue + features += track.features + targets += [track.track_id for _ in track.features] + track.features = [] + self.metric.partial_fit(np.asarray(features), np.asarray(targets), active_targets) + + def _match(self, detections): + def gated_metric(tracks, dets, track_indices, detection_indices): + features = np.array([dets[i].feature for i in detection_indices]) + targets = np.array([tracks[i].track_id for i in track_indices]) + cost_matrix = self.metric.distance(features, targets) + cost_matrix = linear_assignment.gate_cost_matrix( + self.kf, cost_matrix, tracks, dets, track_indices, detection_indices + ) + + return cost_matrix + + # Split track set into confirmed and unconfirmed tracks. + confirmed_tracks = [i for i, t in enumerate(self.tracks) if t.is_confirmed()] + unconfirmed_tracks = [i for i, t in enumerate(self.tracks) if not t.is_confirmed()] + + # Associate confirmed tracks using appearance features. + (matches_a, unmatched_tracks_a, unmatched_detections,) = linear_assignment.matching_cascade( + gated_metric, + self.metric.matching_threshold, + self.max_age, + self.tracks, + detections, + confirmed_tracks, + ) + + # Associate remaining tracks together with unconfirmed tracks using IOU. + iou_track_candidates = unconfirmed_tracks + [ + k for k in unmatched_tracks_a if self.tracks[k].time_since_update == 1 + ] + unmatched_tracks_a = [k for k in unmatched_tracks_a if self.tracks[k].time_since_update != 1] + (matches_b, unmatched_tracks_b, unmatched_detections,) = linear_assignment.min_cost_matching( + iou_matching.iou_cost, + self.max_iou_distance, + self.tracks, + detections, + iou_track_candidates, + unmatched_detections, + ) + + matches = matches_a + matches_b + unmatched_tracks = list(set(unmatched_tracks_a + unmatched_tracks_b)) + return matches, unmatched_tracks, unmatched_detections + + def _initiate_track(self, detection, class_id): + mean, covariance = self.kf.initiate(detection.to_xyah()) + self.tracks.append( + Track( + mean, + covariance, + self._next_id, + class_id, + self.n_init, + self.max_age, + detection.feature, + ) + ) + self._next_id += 1 + + +class NearestNeighborDistanceMetric(object): + def __init__(self, metric, matching_threshold, budget=None): + + if metric == "cosine": + self._metric = _nn_cosine_distance + else: + raise ValueError("Invalid metric; must be either 'euclidean' or 'cosine'") + self.matching_threshold = matching_threshold + self.budget = budget + self.samples = {} + + def partial_fit(self, features, targets, active_targets): + for feature, target in zip(features, targets): + self.samples.setdefault(target, []).append(feature) + if self.budget is not None: + self.samples[target] = self.samples[target][-self.budget :] + self.samples = {k: self.samples[k] for k in active_targets} + + def distance(self, features, targets): + cost_matrix = np.zeros((len(targets), len(features))) + for i, target in enumerate(targets): + cost_matrix[i, :] = self._metric(self.samples[target], features) + return cost_matrix + + +class DeepSort(object): + def __init__( + self, + max_dist=0.1, + min_confidence=0.3, + nms_max_overlap=1.0, + max_iou_distance=0.7, + max_age=30, + n_init=3, + nn_budget=100, + use_cuda=True, + ): + self.min_confidence = min_confidence + self.nms_max_overlap = nms_max_overlap + + # self.extractor = Extractor(model_path, use_cuda=use_cuda) + + max_cosine_distance = max_dist + metric = NearestNeighborDistanceMetric("cosine", max_cosine_distance, nn_budget) + self.tracker = Tracker(metric, max_iou_distance=max_iou_distance, max_age=max_age, n_init=n_init) + + def update(self, fdets, img): + ##### + remain_inds = fdets[:, 4] > self.min_confidence + dets, id_feature = fdets[remain_inds, 0:5], fdets[remain_inds, 5:] + dets[:, 2:4] = dets[:, 2:4] - dets[:, 0:2] + ##### + detections = [ + Detection(dets[i, 0:4], conf, id_feature[i]) + for i, conf in enumerate(dets[:, 4]) + ] + classes = np.zeros((len(detections),)) + + # update tracker + self.tracker.predict() + self.tracker.update(detections, classes) + + # output bbox identities + outputs = [] + for track in self.tracker.tracks: + if not track.is_confirmed() or track.time_since_update > 1: + continue + track.tlwh = track.to_tlwh() + outputs.append(track) + return outputs + + """ + TODO: + Convert bbox from xc_yc_w_h to xtl_ytl_w_h + Thanks JieChen91@github.com for reporting this bug! + """ + + @staticmethod + def _xywh_to_tlwh(bbox_xywh): + if isinstance(bbox_xywh, np.ndarray): + bbox_tlwh = bbox_xywh.copy() + elif isinstance(bbox_xywh, torch.Tensor): + bbox_tlwh = bbox_xywh.clone() + bbox_tlwh[:, 0] = bbox_xywh[:, 0] - bbox_xywh[:, 2] / 2.0 + bbox_tlwh[:, 1] = bbox_xywh[:, 1] - bbox_xywh[:, 3] / 2.0 + return bbox_tlwh + + @staticmethod + def _xyxy_to_tlwh_array(bbox_xyxy): + if isinstance(bbox_xyxy, np.ndarray): + bbox_tlwh = bbox_xyxy.copy() + elif isinstance(bbox_xyxy, torch.Tensor): + bbox_tlwh = bbox_xyxy.clone() + bbox_tlwh[:, 2] = bbox_xyxy[:, 2] - bbox_xyxy[:, 0] + bbox_tlwh[:, 3] = bbox_xyxy[:, 3] - bbox_xyxy[:, 1] + return bbox_tlwh + + def _xywh_to_xyxy(self, bbox_xywh): + x, y, w, h = bbox_xywh + x1 = max(int(x - w / 2), 0) + x2 = min(int(x + w / 2), self.width - 1) + y1 = max(int(y - h / 2), 0) + y2 = min(int(y + h / 2), self.height - 1) + return x1, y1, x2, y2 + + def _tlwh_to_xyxy(self, bbox_tlwh): + """ + TODO: + Convert bbox from xtl_ytl_w_h to xc_yc_w_h + Thanks JieChen91@github.com for reporting this bug! + """ + x, y, w, h = bbox_tlwh + x1 = max(int(x), 0) + x2 = min(int(x + w), self.width - 1) + y1 = max(int(y), 0) + y2 = min(int(y + h), self.height - 1) + return x1, y1, x2, y2 + + def _tlwh_to_xyxy_noclip(self, bbox_tlwh): + """ + TODO: + Convert bbox from xtl_ytl_w_h to xc_yc_w_h + Thanks JieChen91@github.com for reporting this bug! + """ + x, y, w, h = bbox_tlwh + x1 = x + x2 = x + w + y1 = y + y2 = y + h + return x1, y1, x2, y2 + + def increment_ages(self): + self.tracker.increment_ages() + + def _xyxy_to_tlwh(self, bbox_xyxy): + x1, y1, x2, y2 = bbox_xyxy + + t = x1 + l = y1 + w = int(x2 - x1) + h = int(y2 - y1) + return t, l, w, h + + def _get_features(self, bbox_xywh, ori_img): + im_crops = [] + for box in bbox_xywh: + x1, y1, x2, y2 = self._tlwh_to_xyxy(box) + im = ori_img[y1:y2, x1:x2] + im_crops.append(im) + if im_crops: + features = self.extractor(im_crops) + else: + features = np.array([]) + return features diff --git a/trackers/deepsort/detection.py b/trackers/deepsort/detection.py new file mode 100644 index 0000000000000000000000000000000000000000..2101049adb344ab834bc9b8d32d0c41847cc6d35 --- /dev/null +++ b/trackers/deepsort/detection.py @@ -0,0 +1,46 @@ +# vim: expandtab:ts=4:sw=4 +import numpy as np + + +class Detection(object): + """ + This class represents a bounding box detection in a single image. + Parameters + ---------- + tlwh : array_like + Bounding box in format `(x, y, w, h)`. + confidence : float + Detector confidence score. + feature : array_like + A feature vector that describes the object contained in this image. + Attributes + ---------- + tlwh : ndarray + Bounding box in format `(top left x, top left y, width, height)`. + confidence : ndarray + Detector confidence score. + feature : ndarray | NoneType + A feature vector that describes the object contained in this image. + """ + + def __init__(self, tlwh, confidence, feature): + self.tlwh = np.asarray(tlwh, dtype=np.float) + self.confidence = float(confidence) + self.feature = np.asarray(feature, dtype=np.float32) + + def to_tlbr(self): + """Convert bounding box to format `(min x, min y, max x, max y)`, i.e., + `(top left, bottom right)`. + """ + ret = self.tlwh.copy() + ret[2:] += ret[:2] + return ret + + def to_xyah(self): + """Convert bounding box to format `(center x, center y, aspect ratio, + height)`, where the aspect ratio is `width / height`. + """ + ret = self.tlwh.copy() + ret[:2] += ret[2:] / 2 + ret[2] /= ret[3] + return ret diff --git a/trackers/deepsort/iou_matching.py b/trackers/deepsort/iou_matching.py new file mode 100644 index 0000000000000000000000000000000000000000..4d488e26c57acd492985c7f04045f2a3dc90700d --- /dev/null +++ b/trackers/deepsort/iou_matching.py @@ -0,0 +1,78 @@ +# vim: expandtab:ts=4:sw=4 +from __future__ import absolute_import +import numpy as np +from . import linear_assignment + + +def iou(bbox, candidates): + """Computer intersection over union. + Parameters + ---------- + bbox : ndarray + A bounding box in format `(top left x, top left y, width, height)`. + candidates : ndarray + A matrix of candidate bounding boxes (one per row) in the same format + as `bbox`. + Returns + ------- + ndarray + The intersection over union in [0, 1] between the `bbox` and each + candidate. A higher score means a larger fraction of the `bbox` is + occluded by the candidate. + """ + bbox_tl, bbox_br = bbox[:2], bbox[:2] + bbox[2:] + candidates_tl = candidates[:, :2] + candidates_br = candidates[:, :2] + candidates[:, 2:] + + tl = np.c_[ + np.maximum(bbox_tl[0], candidates_tl[:, 0])[:, np.newaxis], + np.maximum(bbox_tl[1], candidates_tl[:, 1])[:, np.newaxis], + ] + br = np.c_[ + np.minimum(bbox_br[0], candidates_br[:, 0])[:, np.newaxis], + np.minimum(bbox_br[1], candidates_br[:, 1])[:, np.newaxis], + ] + wh = np.maximum(0.0, br - tl) + + area_intersection = wh.prod(axis=1) + area_bbox = bbox[2:].prod() + area_candidates = candidates[:, 2:].prod(axis=1) + return area_intersection / (area_bbox + area_candidates - area_intersection) + + +def iou_cost(tracks, detections, track_indices=None, detection_indices=None): + """An intersection over union distance metric. + Parameters + ---------- + tracks : List[deep_sort.track.Track] + A list of tracks. + detections : List[deep_sort.detection.Detection] + A list of detections. + track_indices : Optional[List[int]] + A list of indices to tracks that should be matched. Defaults to + all `tracks`. + detection_indices : Optional[List[int]] + A list of indices to detections that should be matched. Defaults + to all `detections`. + Returns + ------- + ndarray + Returns a cost matrix of shape + len(track_indices), len(detection_indices) where entry (i, j) is + `1 - iou(tracks[track_indices[i]], detections[detection_indices[j]])`. + """ + if track_indices is None: + track_indices = np.arange(len(tracks)) + if detection_indices is None: + detection_indices = np.arange(len(detections)) + + cost_matrix = np.zeros((len(track_indices), len(detection_indices))) + for row, track_idx in enumerate(track_indices): + if tracks[track_idx].time_since_update > 1: + cost_matrix[row, :] = linear_assignment.INFTY_COST + continue + + bbox = tracks[track_idx].to_tlwh() + candidates = np.asarray([detections[i].tlwh for i in detection_indices]) + cost_matrix[row, :] = 1.0 - iou(bbox, candidates) + return cost_matrix diff --git a/trackers/deepsort/kalman_filter.py b/trackers/deepsort/kalman_filter.py new file mode 100644 index 0000000000000000000000000000000000000000..d1565edc75c5ea7c0fd893252232c2f4b74887ae --- /dev/null +++ b/trackers/deepsort/kalman_filter.py @@ -0,0 +1,208 @@ +# vim: expandtab:ts=4:sw=4 +import numpy as np +import scipy.linalg + + +""" +Table for the 0.95 quantile of the chi-square distribution with N degrees of +freedom (contains values for N=1, ..., 9). Taken from MATLAB/Octave's chi2inv +function and used as Mahalanobis gating threshold. +""" +chi2inv95 = { + 1: 3.8415, + 2: 5.9915, + 3: 7.8147, + 4: 9.4877, + 5: 11.070, + 6: 12.592, + 7: 14.067, + 8: 15.507, + 9: 16.919, +} + + +class KalmanFilter(object): + """ + A simple Kalman filter for tracking bounding boxes in image space. + The 8-dimensional state space + x, y, a, h, vx, vy, va, vh + contains the bounding box center position (x, y), aspect ratio a, height h, + and their respective velocities. + Object motion follows a constant velocity model. The bounding box location + (x, y, a, h) is taken as direct observation of the state space (linear + observation model). + """ + + def __init__(self): + ndim, dt = 4, 1.0 + + # Create Kalman filter model matrices. + self._motion_mat = np.eye(2 * ndim, 2 * ndim) + for i in range(ndim): + self._motion_mat[i, ndim + i] = dt + self._update_mat = np.eye(ndim, 2 * ndim) + + # Motion and observation uncertainty are chosen relative to the current + # state estimate. These weights control the amount of uncertainty in + # the model. This is a bit hacky. + self._std_weight_position = 1.0 / 20 + self._std_weight_velocity = 1.0 / 160 + + def initiate(self, measurement): + """Create track from unassociated measurement. + Parameters + ---------- + measurement : ndarray + Bounding box coordinates (x, y, a, h) with center position (x, y), + aspect ratio a, and height h. + Returns + ------- + (ndarray, ndarray) + Returns the mean vector (8 dimensional) and covariance matrix (8x8 + dimensional) of the new track. Unobserved velocities are initialized + to 0 mean. + """ + mean_pos = measurement + mean_vel = np.zeros_like(mean_pos) + mean = np.r_[mean_pos, mean_vel] + + std = [ + 2 * self._std_weight_position * measurement[3], + 2 * self._std_weight_position * measurement[3], + 1e-2, + 2 * self._std_weight_position * measurement[3], + 10 * self._std_weight_velocity * measurement[3], + 10 * self._std_weight_velocity * measurement[3], + 1e-5, + 10 * self._std_weight_velocity * measurement[3], + ] + covariance = np.diag(np.square(std)) + return mean, covariance + + def predict(self, mean, covariance): + """Run Kalman filter prediction step. + Parameters + ---------- + mean : ndarray + The 8 dimensional mean vector of the object state at the previous + time step. + covariance : ndarray + The 8x8 dimensional covariance matrix of the object state at the + previous time step. + Returns + ------- + (ndarray, ndarray) + Returns the mean vector and covariance matrix of the predicted + state. Unobserved velocities are initialized to 0 mean. + """ + std_pos = [ + self._std_weight_position * mean[3], + self._std_weight_position * mean[3], + 1e-2, + self._std_weight_position * mean[3], + ] + std_vel = [ + self._std_weight_velocity * mean[3], + self._std_weight_velocity * mean[3], + 1e-5, + self._std_weight_velocity * mean[3], + ] + motion_cov = np.diag(np.square(np.r_[std_pos, std_vel])) + + mean = np.dot(self._motion_mat, mean) + covariance = np.linalg.multi_dot((self._motion_mat, covariance, self._motion_mat.T)) + motion_cov + + return mean, covariance + + def project(self, mean, covariance): + """Project state distribution to measurement space. + Parameters + ---------- + mean : ndarray + The state's mean vector (8 dimensional array). + covariance : ndarray + The state's covariance matrix (8x8 dimensional). + Returns + ------- + (ndarray, ndarray) + Returns the projected mean and covariance matrix of the given state + estimate. + """ + std = [ + self._std_weight_position * mean[3], + self._std_weight_position * mean[3], + 1e-1, + self._std_weight_position * mean[3], + ] + innovation_cov = np.diag(np.square(std)) + + mean = np.dot(self._update_mat, mean) + covariance = np.linalg.multi_dot((self._update_mat, covariance, self._update_mat.T)) + return mean, covariance + innovation_cov + + def update(self, mean, covariance, measurement): + """Run Kalman filter correction step. + Parameters + ---------- + mean : ndarray + The predicted state's mean vector (8 dimensional). + covariance : ndarray + The state's covariance matrix (8x8 dimensional). + measurement : ndarray + The 4 dimensional measurement vector (x, y, a, h), where (x, y) + is the center position, a the aspect ratio, and h the height of the + bounding box. + Returns + ------- + (ndarray, ndarray) + Returns the measurement-corrected state distribution. + """ + projected_mean, projected_cov = self.project(mean, covariance) + + chol_factor, lower = scipy.linalg.cho_factor(projected_cov, lower=True, check_finite=False) + kalman_gain = scipy.linalg.cho_solve( + (chol_factor, lower), + np.dot(covariance, self._update_mat.T).T, + check_finite=False, + ).T + innovation = measurement - projected_mean + + new_mean = mean + np.dot(innovation, kalman_gain.T) + new_covariance = covariance - np.linalg.multi_dot((kalman_gain, projected_cov, kalman_gain.T)) + return new_mean, new_covariance + + def gating_distance(self, mean, covariance, measurements, only_position=False): + """Compute gating distance between state distribution and measurements. + A suitable distance threshold can be obtained from `chi2inv95`. If + `only_position` is False, the chi-square distribution has 4 degrees of + freedom, otherwise 2. + Parameters + ---------- + mean : ndarray + Mean vector over the state distribution (8 dimensional). + covariance : ndarray + Covariance of the state distribution (8x8 dimensional). + measurements : ndarray + An Nx4 dimensional matrix of N measurements, each in + format (x, y, a, h) where (x, y) is the bounding box center + position, a the aspect ratio, and h the height. + only_position : Optional[bool] + If True, distance computation is done with respect to the bounding + box center position only. + Returns + ------- + ndarray + Returns an array of length N, where the i-th element contains the + squared Mahalanobis distance between (mean, covariance) and + `measurements[i]`. + """ + mean, covariance = self.project(mean, covariance) + if only_position: + mean, covariance = mean[:2], covariance[:2, :2] + measurements = measurements[:, :2] + + cholesky_factor = np.linalg.cholesky(covariance) + d = measurements - mean + z = scipy.linalg.solve_triangular(cholesky_factor, d.T, lower=True, check_finite=False, overwrite_b=True) + squared_maha = np.sum(z * z, axis=0) + return squared_maha diff --git a/trackers/deepsort/linear_assignment.py b/trackers/deepsort/linear_assignment.py new file mode 100644 index 0000000000000000000000000000000000000000..407ba85efbb43ff3f7ba01bc0571812c3ec79e31 --- /dev/null +++ b/trackers/deepsort/linear_assignment.py @@ -0,0 +1,199 @@ +from __future__ import absolute_import +import numpy as np + +# from sklearn.utils.linear_assignment_ import linear_assignment +from scipy.optimize import linear_sum_assignment as linear_assignment +from . import kalman_filter + + +INFTY_COST = 1e5 + + +def min_cost_matching( + distance_metric, + max_distance, + tracks, + detections, + track_indices=None, + detection_indices=None, +): + """Solve linear assignment problem. + Parameters + ---------- + distance_metric : Callable[List[Track], List[Detection], List[int], List[int]) -> ndarray + The distance metric is given a list of tracks and detections as well as + a list of N track indices and M detection indices. The metric should + return the NxM dimensional cost matrix, where element (i, j) is the + association cost between the i-th track in the given track indices and + the j-th detection in the given detection_indices. + max_distance : float + Gating threshold. Associations with cost larger than this value are + disregarded. + tracks : List[track.Track] + A list of predicted tracks at the current time step. + detections : List[detection.Detection] + A list of detections at the current time step. + track_indices : List[int] + List of track indices that maps rows in `cost_matrix` to tracks in + `tracks` (see description above). + detection_indices : List[int] + List of detection indices that maps columns in `cost_matrix` to + detections in `detections` (see description above). + Returns + ------- + (List[(int, int)], List[int], List[int]) + Returns a tuple with the following three entries: + * A list of matched track and detection indices. + * A list of unmatched track indices. + * A list of unmatched detection indices. + """ + if track_indices is None: + track_indices = np.arange(len(tracks)) + if detection_indices is None: + detection_indices = np.arange(len(detections)) + + if len(detection_indices) == 0 or len(track_indices) == 0: + return [], track_indices, detection_indices # Nothing to match. + + cost_matrix = distance_metric(tracks, detections, track_indices, detection_indices) + cost_matrix[cost_matrix > max_distance] = max_distance + 1e-5 + + row_indices, col_indices = linear_assignment(cost_matrix) + + matches, unmatched_tracks, unmatched_detections = [], [], [] + for col, detection_idx in enumerate(detection_indices): + if col not in col_indices: + unmatched_detections.append(detection_idx) + for row, track_idx in enumerate(track_indices): + if row not in row_indices: + unmatched_tracks.append(track_idx) + for row, col in zip(row_indices, col_indices): + track_idx = track_indices[row] + detection_idx = detection_indices[col] + if cost_matrix[row, col] > max_distance: + unmatched_tracks.append(track_idx) + unmatched_detections.append(detection_idx) + else: + matches.append((track_idx, detection_idx)) + return matches, unmatched_tracks, unmatched_detections + + +def matching_cascade( + distance_metric, + max_distance, + cascade_depth, + tracks, + detections, + track_indices=None, + detection_indices=None, +): + """Run matching cascade. + Parameters + ---------- + distance_metric : Callable[List[Track], List[Detection], List[int], List[int]) -> ndarray + The distance metric is given a list of tracks and detections as well as + a list of N track indices and M detection indices. The metric should + return the NxM dimensional cost matrix, where element (i, j) is the + association cost between the i-th track in the given track indices and + the j-th detection in the given detection indices. + max_distance : float + Gating threshold. Associations with cost larger than this value are + disregarded. + cascade_depth: int + The cascade depth, should be se to the maximum track age. + tracks : List[track.Track] + A list of predicted tracks at the current time step. + detections : List[detection.Detection] + A list of detections at the current time step. + track_indices : Optional[List[int]] + List of track indices that maps rows in `cost_matrix` to tracks in + `tracks` (see description above). Defaults to all tracks. + detection_indices : Optional[List[int]] + List of detection indices that maps columns in `cost_matrix` to + detections in `detections` (see description above). Defaults to all + detections. + Returns + ------- + (List[(int, int)], List[int], List[int]) + Returns a tuple with the following three entries: + * A list of matched track and detection indices. + * A list of unmatched track indices. + * A list of unmatched detection indices. + """ + if track_indices is None: + track_indices = list(range(len(tracks))) + if detection_indices is None: + detection_indices = list(range(len(detections))) + + unmatched_detections = detection_indices + matches = [] + for level in range(cascade_depth): + if len(unmatched_detections) == 0: # No detections left + break + + track_indices_l = [k for k in track_indices if tracks[k].time_since_update == 1 + level] + if len(track_indices_l) == 0: # Nothing to match at this level + continue + + matches_l, _, unmatched_detections = min_cost_matching( + distance_metric, + max_distance, + tracks, + detections, + track_indices_l, + unmatched_detections, + ) + matches += matches_l + unmatched_tracks = list(set(track_indices) - set(k for k, _ in matches)) + return matches, unmatched_tracks, unmatched_detections + + +def gate_cost_matrix( + kf, + cost_matrix, + tracks, + detections, + track_indices, + detection_indices, + gated_cost=INFTY_COST, + only_position=False, +): + """Invalidate infeasible entries in cost matrix based on the state + distributions obtained by Kalman filtering. + Parameters + ---------- + kf : The Kalman filter. + cost_matrix : ndarray + The NxM dimensional cost matrix, where N is the number of track indices + and M is the number of detection indices, such that entry (i, j) is the + association cost between `tracks[track_indices[i]]` and + `detections[detection_indices[j]]`. + tracks : List[track.Track] + A list of predicted tracks at the current time step. + detections : List[detection.Detection] + A list of detections at the current time step. + track_indices : List[int] + List of track indices that maps rows in `cost_matrix` to tracks in + `tracks` (see description above). + detection_indices : List[int] + List of detection indices that maps columns in `cost_matrix` to + detections in `detections` (see description above). + gated_cost : Optional[float] + Entries in the cost matrix corresponding to infeasible associations are + set this value. Defaults to a very large value. + only_position : Optional[bool] + If True, only the x, y position of the state distribution is considered + during gating. Defaults to False. + Returns + ------- + ndarray + Returns the modified cost matrix. + """ + gating_dim = 2 if only_position else 4 + gating_threshold = kalman_filter.chi2inv95[gating_dim] + measurements = np.asarray([detections[i].to_xyah() for i in detection_indices]) + for row, track_idx in enumerate(track_indices): + track = tracks[track_idx] + gating_distance = kf.gating_distance(track.mean, track.covariance, measurements, only_position) + cost_matrix[row, gating_distance > gating_threshold] = gated_cost + return cost_matrix diff --git a/trackers/deepsort/reid_model.py b/trackers/deepsort/reid_model.py new file mode 100644 index 0000000000000000000000000000000000000000..7528ed4325e2c15ae7f3154b51a0cf2ea6236e3f --- /dev/null +++ b/trackers/deepsort/reid_model.py @@ -0,0 +1,141 @@ +import torch +import torch.nn as nn +import torch.nn.functional as F +import numpy as np +import cv2 +import logging +import torchvision.transforms as transforms + + +class BasicBlock(nn.Module): + def __init__(self, c_in, c_out, is_downsample=False): + super(BasicBlock, self).__init__() + self.is_downsample = is_downsample + if is_downsample: + self.conv1 = nn.Conv2d(c_in, c_out, 3, stride=2, padding=1, bias=False) + else: + self.conv1 = nn.Conv2d(c_in, c_out, 3, stride=1, padding=1, bias=False) + self.bn1 = nn.BatchNorm2d(c_out) + self.relu = nn.ReLU(True) + self.conv2 = nn.Conv2d(c_out, c_out, 3, stride=1, padding=1, bias=False) + self.bn2 = nn.BatchNorm2d(c_out) + if is_downsample: + self.downsample = nn.Sequential(nn.Conv2d(c_in, c_out, 1, stride=2, bias=False), nn.BatchNorm2d(c_out)) + elif c_in != c_out: + self.downsample = nn.Sequential(nn.Conv2d(c_in, c_out, 1, stride=1, bias=False), nn.BatchNorm2d(c_out)) + self.is_downsample = True + + def forward(self, x): + y = self.conv1(x) + y = self.bn1(y) + y = self.relu(y) + y = self.conv2(y) + y = self.bn2(y) + if self.is_downsample: + x = self.downsample(x) + return F.relu(x.add(y), True) + + +def make_layers(c_in, c_out, repeat_times, is_downsample=False): + blocks = [] + for i in range(repeat_times): + if i == 0: + blocks += [ + BasicBlock(c_in, c_out, is_downsample=is_downsample), + ] + else: + blocks += [ + BasicBlock(c_out, c_out), + ] + return nn.Sequential(*blocks) + + +class Net(nn.Module): + def __init__(self, num_classes=751, reid=False): + super(Net, self).__init__() + # 3 128 64 + self.conv = nn.Sequential( + nn.Conv2d(3, 64, 3, stride=1, padding=1), + nn.BatchNorm2d(64), + nn.ReLU(inplace=True), + # nn.Conv2d(32,32,3,stride=1,padding=1), + # nn.BatchNorm2d(32), + # nn.ReLU(inplace=True), + nn.MaxPool2d(3, 2, padding=1), + ) + # 32 64 32 + self.layer1 = make_layers(64, 64, 2, False) + # 32 64 32 + self.layer2 = make_layers(64, 128, 2, True) + # 64 32 16 + self.layer3 = make_layers(128, 256, 2, True) + # 128 16 8 + self.layer4 = make_layers(256, 512, 2, True) + # 256 8 4 + self.avgpool = nn.AvgPool2d((8, 4), 1) + # 256 1 1 + self.reid = reid + self.classifier = nn.Sequential( + nn.Linear(512, 256), + nn.BatchNorm1d(256), + nn.ReLU(inplace=True), + nn.Dropout(), + nn.Linear(256, num_classes), + ) + + def forward(self, x): + x = self.conv(x) + x = self.layer1(x) + x = self.layer2(x) + x = self.layer3(x) + x = self.layer4(x) + x = self.avgpool(x) + x = x.view(x.size(0), -1) + # B x 128 + if self.reid: + x = x.div(x.norm(p=2, dim=1, keepdim=True)) + return x + # classifier + x = self.classifier(x) + return x + + +class Extractor(object): + def __init__(self, model_path, use_cuda=True): + self.net = Net(reid=True) + self.device = "cuda" if torch.cuda.is_available() and use_cuda else "cpu" + state_dict = torch.load(model_path, map_location=torch.device(self.device))["net_dict"] + self.net.load_state_dict(state_dict) + logger = logging.getLogger("root.tracker") + logger.info("Loading weights from {}... Done!".format(model_path)) + self.net.to(self.device) + self.size = (64, 128) + self.norm = transforms.Compose( + [ + transforms.ToTensor(), + transforms.Normalize([0.485, 0.456, 0.406], [0.229, 0.224, 0.225]), + ] + ) + + def _preprocess(self, im_crops): + """ + TODO: + 1. to float with scale from 0 to 1 + 2. resize to (64, 128) as Market1501 dataset did + 3. concatenate to a numpy array + 3. to torch Tensor + 4. normalize + """ + + def _resize(im, size): + return cv2.resize(im.astype(np.float32) / 255.0, size) + + im_batch = torch.cat([self.norm(_resize(im, self.size)).unsqueeze(0) for im in im_crops], dim=0).float() + return im_batch + + def __call__(self, im_crops): + im_batch = self._preprocess(im_crops) + with torch.no_grad(): + im_batch = im_batch.to(self.device) + features = self.net(im_batch) + return features.cpu().numpy() diff --git a/trackers/deepsort/track.py b/trackers/deepsort/track.py new file mode 100644 index 0000000000000000000000000000000000000000..baccd66a22a3d0b75915a7048fc322cc144b305e --- /dev/null +++ b/trackers/deepsort/track.py @@ -0,0 +1,156 @@ +# vim: expandtab:ts=4:sw=4 + + +class TrackState: + """ + Enumeration type for the single target track state. Newly created tracks are + classified as `tentative` until enough evidence has been collected. Then, + the track state is changed to `confirmed`. Tracks that are no longer alive + are classified as `deleted` to mark them for removal from the set of active + tracks. + """ + + Tentative = 1 + Confirmed = 2 + Deleted = 3 + + +class Track: + """ + A single target track with state space `(x, y, a, h)` and associated + velocities, where `(x, y)` is the center of the bounding box, `a` is the + aspect ratio and `h` is the height. + Parameters + ---------- + mean : ndarray + Mean vector of the initial state distribution. + covariance : ndarray + Covariance matrix of the initial state distribution. + track_id : int + A unique track identifier. + n_init : int + Number of consecutive detections before the track is confirmed. The + track state is set to `Deleted` if a miss occurs within the first + `n_init` frames. + max_age : int + The maximum number of consecutive misses before the track state is + set to `Deleted`. + feature : Optional[ndarray] + Feature vector of the detection this track originates from. If not None, + this feature is added to the `features` cache. + Attributes + ---------- + mean : ndarray + Mean vector of the initial state distribution. + covariance : ndarray + Covariance matrix of the initial state distribution. + track_id : int + A unique track identifier. + hits : int + Total number of measurement updates. + age : int + Total number of frames since first occurance. + time_since_update : int + Total number of frames since last measurement update. + state : TrackState + The current track state. + features : List[ndarray] + A cache of features. On each measurement update, the associated feature + vector is added to this list. + """ + + def __init__(self, mean, covariance, track_id, class_id, n_init, max_age, feature=None): + self.mean = mean + self.covariance = covariance + self.track_id = track_id + self.class_id = class_id + self.hits = 1 + self.age = 1 + self.time_since_update = 0 + + self.state = TrackState.Tentative + self.features = [] + if feature is not None: + self.features.append(feature) + + self._n_init = n_init + self._max_age = max_age + self.tlwh = None + self.score = 1 + + def to_tlwh(self): + """Get current position in bounding box format `(top left x, top left y, + width, height)`. + Returns + ------- + ndarray + The bounding box. + """ + ret = self.mean[:4].copy() + ret[2] *= ret[3] + ret[:2] -= ret[2:] / 2 + return ret + + def to_tlbr(self): + """Get current position in bounding box format `(min x, miny, max x, + max y)`. + Returns + ------- + ndarray + The bounding box. + """ + ret = self.to_tlwh() + ret[2:] = ret[:2] + ret[2:] + return ret + + def increment_age(self): + self.age += 1 + self.time_since_update += 1 + + def predict(self, kf): + """Propagate the state distribution to the current time step using a + Kalman filter prediction step. + Parameters + ---------- + kf : kalman_filter.KalmanFilter + The Kalman filter. + """ + self.mean, self.covariance = kf.predict(self.mean, self.covariance) + self.increment_age() + + def update(self, kf, detection): + """Perform Kalman filter measurement update step and update the feature + cache. + Parameters + ---------- + kf : kalman_filter.KalmanFilter + The Kalman filter. + detection : Detection + The associated detection. + """ + self.mean, self.covariance = kf.update(self.mean, self.covariance, detection.to_xyah()) + self.features.append(detection.feature) + + self.hits += 1 + self.time_since_update = 0 + if self.state == TrackState.Tentative and self.hits >= self._n_init: + self.state = TrackState.Confirmed + + def mark_missed(self): + """Mark this track as missed (no association at the current time step).""" + if self.state == TrackState.Tentative: + self.state = TrackState.Deleted + elif self.time_since_update > self._max_age: + self.state = TrackState.Deleted + + def is_tentative(self): + """Returns True if this track is tentative (unconfirmed).""" + return self.state == TrackState.Tentative + + def is_confirmed(self): + """Returns True if this track is confirmed.""" + return self.state == TrackState.Confirmed + + def is_deleted(self): + """Returns True if this track is dead and should be deleted.""" + return self.state == TrackState.Deleted diff --git a/trackers/fairmot/__pycache__/basetrack.cpython-37.pyc b/trackers/fairmot/__pycache__/basetrack.cpython-37.pyc new file mode 100644 index 0000000000000000000000000000000000000000..db03c7d2854027269d046e172b9fadb59a79363e Binary files /dev/null and b/trackers/fairmot/__pycache__/basetrack.cpython-37.pyc differ diff --git a/trackers/fairmot/__pycache__/kalman_filter.cpython-37.pyc b/trackers/fairmot/__pycache__/kalman_filter.cpython-37.pyc new file mode 100644 index 0000000000000000000000000000000000000000..bcaf379532d57c41f3270b93e449b053f8b7151d Binary files /dev/null and b/trackers/fairmot/__pycache__/kalman_filter.cpython-37.pyc differ diff --git a/trackers/fairmot/__pycache__/matching.cpython-37.pyc b/trackers/fairmot/__pycache__/matching.cpython-37.pyc new file mode 100644 index 0000000000000000000000000000000000000000..df7dffc81f6cfc36300c64ace6e1e27dfd973be3 Binary files /dev/null and b/trackers/fairmot/__pycache__/matching.cpython-37.pyc differ diff --git a/trackers/fairmot/__pycache__/multitracker.cpython-37.pyc b/trackers/fairmot/__pycache__/multitracker.cpython-37.pyc new file mode 100644 index 0000000000000000000000000000000000000000..bb1fecc05a0390f0684afd2db0f48b54bceaf71f Binary files /dev/null and b/trackers/fairmot/__pycache__/multitracker.cpython-37.pyc differ diff --git a/trackers/fairmot/__pycache__/utils.cpython-37.pyc b/trackers/fairmot/__pycache__/utils.cpython-37.pyc new file mode 100644 index 0000000000000000000000000000000000000000..911aa96a11297b3c1cfd34c7ed060ad3ea5e3dcc Binary files /dev/null and b/trackers/fairmot/__pycache__/utils.cpython-37.pyc differ diff --git a/trackers/fairmot/basetrack.py b/trackers/fairmot/basetrack.py new file mode 100644 index 0000000000000000000000000000000000000000..10edc7e1a0dcf8a1087d30cb4782540def141293 --- /dev/null +++ b/trackers/fairmot/basetrack.py @@ -0,0 +1,52 @@ +import numpy as np +from collections import OrderedDict + + +class TrackState(object): + New = 0 + Tracked = 1 + Lost = 2 + Removed = 3 + + +class BaseTrack(object): + _count = 0 + + track_id = 0 + is_activated = False + state = TrackState.New + + history = OrderedDict() + features = [] + curr_feature = None + score = 0 + start_frame = 0 + frame_id = 0 + time_since_update = 0 + + # multi-camera + location = (np.inf, np.inf) + + @property + def end_frame(self): + return self.frame_id + + @staticmethod + def next_id(): + BaseTrack._count += 1 + return BaseTrack._count + + def activate(self, *args): + raise NotImplementedError + + def predict(self): + raise NotImplementedError + + def update(self, *args, **kwargs): + raise NotImplementedError + + def mark_lost(self): + self.state = TrackState.Lost + + def mark_removed(self): + self.state = TrackState.Removed \ No newline at end of file diff --git a/trackers/fairmot/kalman_filter.py b/trackers/fairmot/kalman_filter.py new file mode 100644 index 0000000000000000000000000000000000000000..ab7b31e25cd9b0c46a02b06f27262ede0cb566c0 --- /dev/null +++ b/trackers/fairmot/kalman_filter.py @@ -0,0 +1,269 @@ +# vim: expandtab:ts=4:sw=4 +import numpy as np +import scipy.linalg + +""" +Table for the 0.95 quantile of the chi-square distribution with N degrees of +freedom (contains values for N=1, ..., 9). Taken from MATLAB/Octave's chi2inv +function and used as Mahalanobis gating threshold. +""" +chi2inv95 = { + 1: 3.8415, + 2: 5.9915, + 3: 7.8147, + 4: 9.4877, + 5: 11.070, + 6: 12.592, + 7: 14.067, + 8: 15.507, + 9: 16.919} + + +class KalmanFilter(object): + """ + A simple Kalman filter for tracking bounding boxes in image space. + + The 8-dimensional state space + + x, y, a, h, vx, vy, va, vh + + contains the bounding box center position (x, y), aspect ratio a, height h, + and their respective velocities. + + Object motion follows a constant velocity model. The bounding box location + (x, y, a, h) is taken as direct observation of the state space (linear + observation model). + + """ + + def __init__(self): + ndim, dt = 4, 1. + + # Create Kalman filter model matrices. + self._motion_mat = np.eye(2 * ndim, 2 * ndim) + for i in range(ndim): + self._motion_mat[i, ndim + i] = dt + self._update_mat = np.eye(ndim, 2 * ndim) + + # Motion and observation uncertainty are chosen relative to the current + # state estimate. These weights control the amount of uncertainty in + # the model. This is a bit hacky. + self._std_weight_position = 1. / 20 + self._std_weight_velocity = 1. / 160 + + def initiate(self, measurement): + """Create track from unassociated measurement. + + Parameters + ---------- + measurement : ndarray + Bounding box coordinates (x, y, a, h) with center position (x, y), + aspect ratio a, and height h. + + Returns + ------- + (ndarray, ndarray) + Returns the mean vector (8 dimensional) and covariance matrix (8x8 + dimensional) of the new track. Unobserved velocities are initialized + to 0 mean. + + """ + mean_pos = measurement + mean_vel = np.zeros_like(mean_pos) + mean = np.r_[mean_pos, mean_vel] + + std = [ + 2 * self._std_weight_position * measurement[3], + 2 * self._std_weight_position * measurement[3], + 1e-2, + 2 * self._std_weight_position * measurement[3], + 10 * self._std_weight_velocity * measurement[3], + 10 * self._std_weight_velocity * measurement[3], + 1e-5, + 10 * self._std_weight_velocity * measurement[3]] + covariance = np.diag(np.square(std)) + return mean, covariance + + def predict(self, mean, covariance): + """Run Kalman filter prediction step. + + Parameters + ---------- + mean : ndarray + The 8 dimensional mean vector of the object state at the previous + time step. + covariance : ndarray + The 8x8 dimensional covariance matrix of the object state at the + previous time step. + + Returns + ------- + (ndarray, ndarray) + Returns the mean vector and covariance matrix of the predicted + state. Unobserved velocities are initialized to 0 mean. + + """ + std_pos = [ + self._std_weight_position * mean[3], + self._std_weight_position * mean[3], + 1e-2, + self._std_weight_position * mean[3]] + std_vel = [ + self._std_weight_velocity * mean[3], + self._std_weight_velocity * mean[3], + 1e-5, + self._std_weight_velocity * mean[3]] + motion_cov = np.diag(np.square(np.r_[std_pos, std_vel])) + + #mean = np.dot(self._motion_mat, mean) + mean = np.dot(mean, self._motion_mat.T) + covariance = np.linalg.multi_dot(( + self._motion_mat, covariance, self._motion_mat.T)) + motion_cov + + return mean, covariance + + def project(self, mean, covariance): + """Project state distribution to measurement space. + + Parameters + ---------- + mean : ndarray + The state's mean vector (8 dimensional array). + covariance : ndarray + The state's covariance matrix (8x8 dimensional). + + Returns + ------- + (ndarray, ndarray) + Returns the projected mean and covariance matrix of the given state + estimate. + + """ + std = [ + self._std_weight_position * mean[3], + self._std_weight_position * mean[3], + 1e-1, + self._std_weight_position * mean[3]] + innovation_cov = np.diag(np.square(std)) + + mean = np.dot(self._update_mat, mean) + covariance = np.linalg.multi_dot(( + self._update_mat, covariance, self._update_mat.T)) + return mean, covariance + innovation_cov + + def multi_predict(self, mean, covariance): + """Run Kalman filter prediction step (Vectorized version). + Parameters + ---------- + mean : ndarray + The Nx8 dimensional mean matrix of the object states at the previous + time step. + covariance : ndarray + The Nx8x8 dimensional covariance matrics of the object states at the + previous time step. + Returns + ------- + (ndarray, ndarray) + Returns the mean vector and covariance matrix of the predicted + state. Unobserved velocities are initialized to 0 mean. + """ + std_pos = [ + self._std_weight_position * mean[:, 3], + self._std_weight_position * mean[:, 3], + 1e-2 * np.ones_like(mean[:, 3]), + self._std_weight_position * mean[:, 3]] + std_vel = [ + self._std_weight_velocity * mean[:, 3], + self._std_weight_velocity * mean[:, 3], + 1e-5 * np.ones_like(mean[:, 3]), + self._std_weight_velocity * mean[:, 3]] + sqr = np.square(np.r_[std_pos, std_vel]).T + + motion_cov = [] + for i in range(len(mean)): + motion_cov.append(np.diag(sqr[i])) + motion_cov = np.asarray(motion_cov) + + mean = np.dot(mean, self._motion_mat.T) + left = np.dot(self._motion_mat, covariance).transpose((1, 0, 2)) + covariance = np.dot(left, self._motion_mat.T) + motion_cov + + return mean, covariance + + def update(self, mean, covariance, measurement): + """Run Kalman filter correction step. + + Parameters + ---------- + mean : ndarray + The predicted state's mean vector (8 dimensional). + covariance : ndarray + The state's covariance matrix (8x8 dimensional). + measurement : ndarray + The 4 dimensional measurement vector (x, y, a, h), where (x, y) + is the center position, a the aspect ratio, and h the height of the + bounding box. + + Returns + ------- + (ndarray, ndarray) + Returns the measurement-corrected state distribution. + + """ + projected_mean, projected_cov = self.project(mean, covariance) + + chol_factor, lower = scipy.linalg.cho_factor( + projected_cov, lower=True, check_finite=False) + kalman_gain = scipy.linalg.cho_solve( + (chol_factor, lower), np.dot(covariance, self._update_mat.T).T, + check_finite=False).T + innovation = measurement - projected_mean + + new_mean = mean + np.dot(innovation, kalman_gain.T) + new_covariance = covariance - np.linalg.multi_dot(( + kalman_gain, projected_cov, kalman_gain.T)) + return new_mean, new_covariance + + def gating_distance(self, mean, covariance, measurements, + only_position=False, metric='maha'): + """Compute gating distance between state distribution and measurements. + A suitable distance threshold can be obtained from `chi2inv95`. If + `only_position` is False, the chi-square distribution has 4 degrees of + freedom, otherwise 2. + Parameters + ---------- + mean : ndarray + Mean vector over the state distribution (8 dimensional). + covariance : ndarray + Covariance of the state distribution (8x8 dimensional). + measurements : ndarray + An Nx4 dimensional matrix of N measurements, each in + format (x, y, a, h) where (x, y) is the bounding box center + position, a the aspect ratio, and h the height. + only_position : Optional[bool] + If True, distance computation is done with respect to the bounding + box center position only. + Returns + ------- + ndarray + Returns an array of length N, where the i-th element contains the + squared Mahalanobis distance between (mean, covariance) and + `measurements[i]`. + """ + mean, covariance = self.project(mean, covariance) + if only_position: + mean, covariance = mean[:2], covariance[:2, :2] + measurements = measurements[:, :2] + + d = measurements - mean + if metric == 'gaussian': + return np.sum(d * d, axis=1) + elif metric == 'maha': + cholesky_factor = np.linalg.cholesky(covariance) + z = scipy.linalg.solve_triangular( + cholesky_factor, d.T, lower=True, check_finite=False, + overwrite_b=True) + squared_maha = np.sum(z * z, axis=0) + return squared_maha + else: + raise ValueError('invalid distance metric') diff --git a/trackers/fairmot/matching.py b/trackers/fairmot/matching.py new file mode 100644 index 0000000000000000000000000000000000000000..27e465aad340e78feb5f055cc2c161389dd56a24 --- /dev/null +++ b/trackers/fairmot/matching.py @@ -0,0 +1,136 @@ +import cv2 +import numpy as np +import scipy +import lap +from scipy.spatial.distance import cdist + +from cython_bbox import bbox_overlaps as bbox_ious +from . import kalman_filter +import time + +def merge_matches(m1, m2, shape): + O,P,Q = shape + m1 = np.asarray(m1) + m2 = np.asarray(m2) + + M1 = scipy.sparse.coo_matrix((np.ones(len(m1)), (m1[:, 0], m1[:, 1])), shape=(O, P)) + M2 = scipy.sparse.coo_matrix((np.ones(len(m2)), (m2[:, 0], m2[:, 1])), shape=(P, Q)) + + mask = M1*M2 + match = mask.nonzero() + match = list(zip(match[0], match[1])) + unmatched_O = tuple(set(range(O)) - set([i for i, j in match])) + unmatched_Q = tuple(set(range(Q)) - set([j for i, j in match])) + + return match, unmatched_O, unmatched_Q + + +def _indices_to_matches(cost_matrix, indices, thresh): + matched_cost = cost_matrix[tuple(zip(*indices))] + matched_mask = (matched_cost <= thresh) + + matches = indices[matched_mask] + unmatched_a = tuple(set(range(cost_matrix.shape[0])) - set(matches[:, 0])) + unmatched_b = tuple(set(range(cost_matrix.shape[1])) - set(matches[:, 1])) + + return matches, unmatched_a, unmatched_b + + +def linear_assignment(cost_matrix, thresh): + if cost_matrix.size == 0: + return np.empty((0, 2), dtype=int), tuple(range(cost_matrix.shape[0])), tuple(range(cost_matrix.shape[1])) + matches, unmatched_a, unmatched_b = [], [], [] + cost, x, y = lap.lapjv(cost_matrix, extend_cost=True, cost_limit=thresh) + for ix, mx in enumerate(x): + if mx >= 0: + matches.append([ix, mx]) + unmatched_a = np.where(x < 0)[0] + unmatched_b = np.where(y < 0)[0] + matches = np.asarray(matches) + return matches, unmatched_a, unmatched_b + + +def ious(atlbrs, btlbrs): + """ + Compute cost based on IoU + :type atlbrs: list[tlbr] | np.ndarray + :type atlbrs: list[tlbr] | np.ndarray + + :rtype ious np.ndarray + """ + ious = np.zeros((len(atlbrs), len(btlbrs)), dtype=np.float) + if ious.size == 0: + return ious + + ious = bbox_ious( + np.ascontiguousarray(atlbrs, dtype=np.float), + np.ascontiguousarray(btlbrs, dtype=np.float) + ) + + return ious + + +def iou_distance(atracks, btracks): + """ + Compute cost based on IoU + :type atracks: list[STrack] + :type btracks: list[STrack] + + :rtype cost_matrix np.ndarray + """ + + if (len(atracks)>0 and isinstance(atracks[0], np.ndarray)) or (len(btracks) > 0 and isinstance(btracks[0], np.ndarray)): + atlbrs = atracks + btlbrs = btracks + else: + atlbrs = [track.tlbr for track in atracks] + btlbrs = [track.tlbr for track in btracks] + _ious = ious(atlbrs, btlbrs) + cost_matrix = 1 - _ious + + return cost_matrix + +def embedding_distance(tracks, detections, metric='cosine'): + """ + :param tracks: list[STrack] + :param detections: list[BaseTrack] + :param metric: + :return: cost_matrix np.ndarray + """ + + cost_matrix = np.zeros((len(tracks), len(detections)), dtype=np.float) + if cost_matrix.size == 0: + return cost_matrix + det_features = np.asarray([track.curr_feat for track in detections], dtype=np.float) + #for i, track in enumerate(tracks): + #cost_matrix[i, :] = np.maximum(0.0, cdist(track.smooth_feat.reshape(1,-1), det_features, metric)) + track_features = np.asarray([track.smooth_feat for track in tracks], dtype=np.float) + cost_matrix = np.maximum(0.0, cdist(track_features, det_features, metric)) # Nomalized features + return cost_matrix + + +def gate_cost_matrix(kf, cost_matrix, tracks, detections, only_position=False): + if cost_matrix.size == 0: + return cost_matrix + gating_dim = 2 if only_position else 4 + gating_threshold = kalman_filter.chi2inv95[gating_dim] + measurements = np.asarray([det.to_xyah() for det in detections]) + for row, track in enumerate(tracks): + gating_distance = kf.gating_distance( + track.mean, track.covariance, measurements, only_position) + cost_matrix[row, gating_distance > gating_threshold] = np.inf + return cost_matrix + + +def fuse_motion(kf, cost_matrix, tracks, detections, only_position=False, lambda_=0.98): + if cost_matrix.size == 0: + return cost_matrix + gating_dim = 2 if only_position else 4 + gating_threshold = kalman_filter.chi2inv95[gating_dim] + measurements = np.asarray([det.to_xyah() for det in detections]) + for row, track in enumerate(tracks): + gating_distance = kf.gating_distance( + track.mean, track.covariance, measurements, only_position, metric='maha') + cost_matrix[row, gating_distance > gating_threshold] = np.inf + cost_matrix[row] = lambda_ * cost_matrix[row] + (1 - lambda_) * gating_distance + return cost_matrix diff --git a/trackers/fairmot/multitracker.py b/trackers/fairmot/multitracker.py new file mode 100644 index 0000000000000000000000000000000000000000..fafccbb523671068dbd2c0c42cde3ed05f7d58cd --- /dev/null +++ b/trackers/fairmot/multitracker.py @@ -0,0 +1,347 @@ +import itertools +import os +import os.path as osp +import time +from collections import deque + +import cv2 +import numpy as np +from .kalman_filter import KalmanFilter +from tracking_utils.log import logger +# from .utils import * + +from . import matching + +from .basetrack import BaseTrack, TrackState + + +class STrack(BaseTrack): + shared_kalman = KalmanFilter() + + def __init__(self, tlwh, score, temp_feat, buffer_size=30): + + # wait activate + self._tlwh = np.asarray(tlwh, dtype=np.float) + self.kalman_filter = None + self.mean, self.covariance = None, None + self.is_activated = False + + self.score = score + self.tracklet_len = 0 + + self.smooth_feat = None + self.update_features(temp_feat) + self.features = deque([], maxlen=buffer_size) + self.alpha = 0.9 + + def update_features(self, feat): + feat /= np.linalg.norm(feat) + self.curr_feat = feat + if self.smooth_feat is None: + self.smooth_feat = feat + else: + self.smooth_feat = self.alpha * self.smooth_feat + (1 - self.alpha) * feat + self.features.append(feat) + self.smooth_feat /= np.linalg.norm(self.smooth_feat) + + def predict(self): + mean_state = self.mean.copy() + if self.state != TrackState.Tracked: + mean_state[7] = 0 + self.mean, self.covariance = self.kalman_filter.predict(mean_state, self.covariance) + + @staticmethod + def multi_predict(stracks): + if len(stracks) > 0: + multi_mean = np.asarray([st.mean.copy() for st in stracks]) + multi_covariance = np.asarray([st.covariance for st in stracks]) + for i, st in enumerate(stracks): + if st.state != TrackState.Tracked: + multi_mean[i][7] = 0 + multi_mean, multi_covariance = STrack.shared_kalman.multi_predict(multi_mean, multi_covariance) + for i, (mean, cov) in enumerate(zip(multi_mean, multi_covariance)): + stracks[i].mean = mean + stracks[i].covariance = cov + + def activate(self, kalman_filter, frame_id): + """Start a new tracklet""" + self.kalman_filter = kalman_filter + self.track_id = self.next_id() + self.mean, self.covariance = self.kalman_filter.initiate(self.tlwh_to_xyah(self._tlwh)) + + self.tracklet_len = 0 + self.state = TrackState.Tracked + if frame_id == 1: + self.is_activated = True + # self.is_activated = True + self.frame_id = frame_id + self.start_frame = frame_id + + def re_activate(self, new_track, frame_id, new_id=False): + self.mean, self.covariance = self.kalman_filter.update( + self.mean, self.covariance, self.tlwh_to_xyah(new_track.tlwh) + ) + + self.update_features(new_track.curr_feat) + self.tracklet_len = 0 + self.state = TrackState.Tracked + self.is_activated = True + self.frame_id = frame_id + if new_id: + self.track_id = self.next_id() + + def update(self, new_track, frame_id, update_feature=True): + """ + Update a matched track + :type new_track: STrack + :type frame_id: int + :type update_feature: bool + :return: + """ + self.frame_id = frame_id + self.tracklet_len += 1 + + new_tlwh = new_track.tlwh + self.mean, self.covariance = self.kalman_filter.update( + self.mean, self.covariance, self.tlwh_to_xyah(new_tlwh)) + self.state = TrackState.Tracked + self.is_activated = True + + self.score = new_track.score + if update_feature: + self.update_features(new_track.curr_feat) + + @property + def tlwh(self): + """Get current position in bounding box format `(top left x, top left y, + width, height)`. + """ + if self.mean is None: + return self._tlwh.copy() + ret = self.mean[:4].copy() + ret[2] *= ret[3] + ret[:2] -= ret[2:] / 2 + return ret + + @property + def tlbr(self): + """Convert bounding box to format `(min x, min y, max x, max y)`, i.e., + `(top left, bottom right)`. + """ + ret = self.tlwh.copy() + ret[2:] += ret[:2] + return ret + + @staticmethod + def tlwh_to_xyah(tlwh): + """Convert bounding box to format `(center x, center y, aspect ratio, + height)`, where the aspect ratio is `width / height`. + """ + ret = np.asarray(tlwh).copy() + ret[:2] += ret[2:] / 2 + ret[2] /= ret[3] + return ret + + def to_xyah(self): + return self.tlwh_to_xyah(self.tlwh) + + @staticmethod + def tlbr_to_tlwh(tlbr): + ret = np.asarray(tlbr).copy() + ret[2:] -= ret[:2] + return ret + + @staticmethod + def tlwh_to_tlbr(tlwh): + ret = np.asarray(tlwh).copy() + ret[2:] += ret[:2] + return ret + + def __repr__(self): + return 'OT_{}_({}-{})'.format(self.track_id, self.start_frame, self.end_frame) + + +class JDETracker(object): + def __init__(self, opt, frame_rate=30): + self.opt = opt + + self.tracked_stracks = [] # type: list[STrack] + self.lost_stracks = [] # type: list[STrack] + self.removed_stracks = [] # type: list[STrack] + + self.frame_id = 0 + self.det_thresh = opt.track_thresh + self.buffer_size = int(frame_rate / 30.0 * opt.track_buffer) + self.max_time_lost = self.buffer_size + self.mean = np.array([0.408, 0.447, 0.470], dtype=np.float32).reshape(1, 1, 3) + self.std = np.array([0.289, 0.274, 0.278], dtype=np.float32).reshape(1, 1, 3) + + self.kalman_filter = KalmanFilter() + logger.disabled = True + + def update(self, fdets, img): # , img_info, img_size): + self.frame_id += 1 + activated_starcks = [] + refind_stracks = [] + lost_stracks = [] + removed_stracks = [] + ##### + remain_inds = fdets[:, 4] > self.opt.track_thresh + dets, id_feature = fdets[remain_inds, 0:5], fdets[remain_inds, 5:] + # vis + ''' + for i in range(0, dets.shape[0]): + bbox = dets[i][0:4] + cv2.rectangle(img0, (bbox[0], bbox[1]), + (bbox[2], bbox[3]), + (0, 255, 0), 2) + cv2.imshow('dets', img0) + cv2.waitKey(0) + id0 = id0-1 + ''' + + if len(dets) > 0: + '''Detections''' + detections = [STrack(STrack.tlbr_to_tlwh(tlbrs[:4]), tlbrs[4], f, 30) for + (tlbrs, f) in zip(dets[:, :5], id_feature)] + else: + detections = [] + + ''' Add newly detected tracklets to tracked_stracks''' + unconfirmed = [] + tracked_stracks = [] # type: list[STrack] + for track in self.tracked_stracks: + if not track.is_activated: + unconfirmed.append(track) + else: + tracked_stracks.append(track) + + ''' Step 2: First association, with embedding''' + strack_pool = joint_stracks(tracked_stracks, self.lost_stracks) + # Predict the current location with KF + # for strack in strack_pool: + # strack.predict() + STrack.multi_predict(strack_pool) + dists = matching.embedding_distance(strack_pool, detections) + # dists = matching.iou_distance(strack_pool, detections) + dists = matching.fuse_motion(self.kalman_filter, dists, strack_pool, detections) + matches, u_track, u_detection = matching.linear_assignment(dists, thresh=0.4) + + for itracked, idet in matches: + track = strack_pool[itracked] + det = detections[idet] + if track.state == TrackState.Tracked: + track.update(detections[idet], self.frame_id) + activated_starcks.append(track) + else: + track.re_activate(det, self.frame_id, new_id=False) + refind_stracks.append(track) + + ''' Step 3: Second association, with IOU''' + detections = [detections[i] for i in u_detection] + r_tracked_stracks = [strack_pool[i] for i in u_track if strack_pool[i].state == TrackState.Tracked] + dists = matching.iou_distance(r_tracked_stracks, detections) + matches, u_track, u_detection = matching.linear_assignment(dists, thresh=0.5) + + for itracked, idet in matches: + track = r_tracked_stracks[itracked] + det = detections[idet] + if track.state == TrackState.Tracked: + track.update(det, self.frame_id) + activated_starcks.append(track) + else: + track.re_activate(det, self.frame_id, new_id=False) + refind_stracks.append(track) + + for it in u_track: + track = r_tracked_stracks[it] + if not track.state == TrackState.Lost: + track.mark_lost() + lost_stracks.append(track) + + '''Deal with unconfirmed tracks, usually tracks with only one beginning frame''' + detections = [detections[i] for i in u_detection] + dists = matching.iou_distance(unconfirmed, detections) + matches, u_unconfirmed, u_detection = matching.linear_assignment(dists, thresh=0.7) + for itracked, idet in matches: + unconfirmed[itracked].update(detections[idet], self.frame_id) + activated_starcks.append(unconfirmed[itracked]) + for it in u_unconfirmed: + track = unconfirmed[it] + track.mark_removed() + removed_stracks.append(track) + + """ Step 4: Init new stracks""" + for inew in u_detection: + track = detections[inew] + if track.score < self.det_thresh: + continue + track.activate(self.kalman_filter, self.frame_id) + activated_starcks.append(track) + """ Step 5: Update state""" + for track in self.lost_stracks: + if self.frame_id - track.end_frame > self.max_time_lost: + track.mark_removed() + removed_stracks.append(track) + + # print('Ramained match {} s'.format(t4-t3)) + + self.tracked_stracks = [t for t in self.tracked_stracks if t.state == TrackState.Tracked] + self.tracked_stracks = joint_stracks(self.tracked_stracks, activated_starcks) + self.tracked_stracks = joint_stracks(self.tracked_stracks, refind_stracks) + self.lost_stracks = sub_stracks(self.lost_stracks, self.tracked_stracks) + self.lost_stracks.extend(lost_stracks) + self.lost_stracks = sub_stracks(self.lost_stracks, self.removed_stracks) + self.removed_stracks.extend(removed_stracks) + self.tracked_stracks, self.lost_stracks = remove_duplicate_stracks(self.tracked_stracks, self.lost_stracks) + # get scores of lost tracks + output_stracks = [track for track in self.tracked_stracks if track.is_activated] + + logger.debug('===========Frame {}=========='.format(self.frame_id)) + logger.debug('Activated: {}'.format([track.track_id for track in activated_starcks])) + logger.debug('Refind: {}'.format([track.track_id for track in refind_stracks])) + logger.debug('Lost: {}'.format([track.track_id for track in lost_stracks])) + logger.debug('Removed: {}'.format([track.track_id for track in removed_stracks])) + + return output_stracks + + +def joint_stracks(tlista, tlistb): + exists = {} + res = [] + for t in tlista: + exists[t.track_id] = 1 + res.append(t) + for t in tlistb: + tid = t.track_id + if not exists.get(tid, 0): + exists[tid] = 1 + res.append(t) + return res + + +def sub_stracks(tlista, tlistb): + stracks = {} + for t in tlista: + stracks[t.track_id] = t + for t in tlistb: + tid = t.track_id + if stracks.get(tid, 0): + del stracks[tid] + return list(stracks.values()) + + +def remove_duplicate_stracks(stracksa, stracksb): + pdist = matching.iou_distance(stracksa, stracksb) + pairs = np.where(pdist < 0.15) + dupa, dupb = list(), list() + for p, q in zip(*pairs): + timep = stracksa[p].frame_id - stracksa[p].start_frame + timeq = stracksb[q].frame_id - stracksb[q].start_frame + if timep > timeq: + dupb.append(q) + else: + dupa.append(p) + resa = [t for i, t in enumerate(stracksa) if not i in dupa] + resb = [t for i, t in enumerate(stracksb) if not i in dupb] + return resa, resb diff --git a/trackers/fairmot/utils.py b/trackers/fairmot/utils.py new file mode 100644 index 0000000000000000000000000000000000000000..cbfba7e400bc92631b51bf01d41e868e1b7c6b89 --- /dev/null +++ b/trackers/fairmot/utils.py @@ -0,0 +1,433 @@ +import glob +import random +import time +import os +import os.path as osp + +import cv2 +import matplotlib.pyplot as plt +import numpy as np +import torch +import torch.nn.functional as F +from torchvision.ops import nms + +#import maskrcnn_benchmark.layers.nms as nms +# Set printoptions +torch.set_printoptions(linewidth=1320, precision=5, profile='long') +np.set_printoptions(linewidth=320, formatter={'float_kind': '{:11.5g}'.format}) # format short g, %precision=5 + +def mkdir_if_missing(d): + if not osp.exists(d): + os.makedirs(d) + + +def float3(x): # format floats to 3 decimals + return float(format(x, '.3f')) + + +def init_seeds(seed=0): + random.seed(seed) + np.random.seed(seed) + torch.manual_seed(seed) + torch.cuda.manual_seed(seed) + torch.cuda.manual_seed_all(seed) + + +def load_classes(path): + """ + Loads class labels at 'path' + """ + fp = open(path, 'r') + names = fp.read().split('\n') + return list(filter(None, names)) # filter removes empty strings (such as last line) + + +def model_info(model): # Plots a line-by-line description of a PyTorch model + n_p = sum(x.numel() for x in model.parameters()) # number parameters + n_g = sum(x.numel() for x in model.parameters() if x.requires_grad) # number gradients + print('\n%5s %50s %9s %12s %20s %12s %12s' % ('layer', 'name', 'gradient', 'parameters', 'shape', 'mu', 'sigma')) + for i, (name, p) in enumerate(model.named_parameters()): + name = name.replace('module_list.', '') + print('%5g %50s %9s %12g %20s %12.3g %12.3g' % ( + i, name, p.requires_grad, p.numel(), list(p.shape), p.mean(), p.std())) + print('Model Summary: %g layers, %g parameters, %g gradients\n' % (i + 1, n_p, n_g)) + + + +def plot_one_box(x, img, color=None, label=None, line_thickness=None): # Plots one bounding box on image img + tl = line_thickness or round(0.0004 * max(img.shape[0:2])) + 1 # line thickness + color = color or [random.randint(0, 255) for _ in range(3)] + c1, c2 = (int(x[0]), int(x[1])), (int(x[2]), int(x[3])) + cv2.rectangle(img, c1, c2, color, thickness=tl) + if label: + tf = max(tl - 1, 1) # font thickness + t_size = cv2.getTextSize(label, 0, fontScale=tl / 3, thickness=tf)[0] + c2 = c1[0] + t_size[0], c1[1] - t_size[1] - 3 + cv2.rectangle(img, c1, c2, color, -1) # filled + cv2.putText(img, label, (c1[0], c1[1] - 2), 0, tl / 3, [225, 255, 255], thickness=tf, lineType=cv2.LINE_AA) + + +def weights_init_normal(m): + classname = m.__class__.__name__ + if classname.find('Conv') != -1: + torch.nn.init.normal_(m.weight.data, 0.0, 0.03) + elif classname.find('BatchNorm2d') != -1: + torch.nn.init.normal_(m.weight.data, 1.0, 0.03) + torch.nn.init.constant_(m.bias.data, 0.0) + + +def xyxy2xywh(x): + # Convert bounding box format from [x1, y1, x2, y2] to [x, y, w, h] + y = torch.zeros(x.shape) if x.dtype is torch.float32 else np.zeros(x.shape) + y[:, 0] = (x[:, 0] + x[:, 2]) / 2 + y[:, 1] = (x[:, 1] + x[:, 3]) / 2 + y[:, 2] = x[:, 2] - x[:, 0] + y[:, 3] = x[:, 3] - x[:, 1] + return y + + +def xywh2xyxy(x): + # Convert bounding box format from [x, y, w, h] to [x1, y1, x2, y2] + y = torch.zeros(x.shape) if x.dtype is torch.float32 else np.zeros(x.shape) + y[:, 0] = (x[:, 0] - x[:, 2] / 2) + y[:, 1] = (x[:, 1] - x[:, 3] / 2) + y[:, 2] = (x[:, 0] + x[:, 2] / 2) + y[:, 3] = (x[:, 1] + x[:, 3] / 2) + return y + + +def scale_coords(img_size, coords, img0_shape): + # Rescale x1, y1, x2, y2 from 416 to image size + gain_w = float(img_size[0]) / img0_shape[1] # gain = old / new + gain_h = float(img_size[1]) / img0_shape[0] + gain = min(gain_w, gain_h) + pad_x = (img_size[0] - img0_shape[1] * gain) / 2 # width padding + pad_y = (img_size[1] - img0_shape[0] * gain) / 2 # height padding + coords[:, [0, 2]] -= pad_x + coords[:, [1, 3]] -= pad_y + coords[:, 0:4] /= gain + coords[:, :4] = torch.clamp(coords[:, :4], min=0) + return coords + + +def ap_per_class(tp, conf, pred_cls, target_cls): + """ Compute the average precision, given the recall and precision curves. + Method originally from https://github.com/rafaelpadilla/Object-Detection-Metrics. + # Arguments + tp: True positives (list). + conf: Objectness value from 0-1 (list). + pred_cls: Predicted object classes (list). + target_cls: True object classes (list). + # Returns + The average precision as computed in py-faster-rcnn. + """ + + # lists/pytorch to numpy + tp, conf, pred_cls, target_cls = np.array(tp), np.array(conf), np.array(pred_cls), np.array(target_cls) + + # Sort by objectness + i = np.argsort(-conf) + tp, conf, pred_cls = tp[i], conf[i], pred_cls[i] + + # Find unique classes + unique_classes = np.unique(np.concatenate((pred_cls, target_cls), 0)) + + # Create Precision-Recall curve and compute AP for each class + ap, p, r = [], [], [] + for c in unique_classes: + i = pred_cls == c + n_gt = sum(target_cls == c) # Number of ground truth objects + n_p = sum(i) # Number of predicted objects + + if (n_p == 0) and (n_gt == 0): + continue + elif (n_p == 0) or (n_gt == 0): + ap.append(0) + r.append(0) + p.append(0) + else: + # Accumulate FPs and TPs + fpc = np.cumsum(1 - tp[i]) + tpc = np.cumsum(tp[i]) + + # Recall + recall_curve = tpc / (n_gt + 1e-16) + r.append(tpc[-1] / (n_gt + 1e-16)) + + # Precision + precision_curve = tpc / (tpc + fpc) + p.append(tpc[-1] / (tpc[-1] + fpc[-1])) + + # AP from recall-precision curve + ap.append(compute_ap(recall_curve, precision_curve)) + + return np.array(ap), unique_classes.astype('int32'), np.array(r), np.array(p) + + +def compute_ap(recall, precision): + """ Compute the average precision, given the recall and precision curves. + Code originally from https://github.com/rbgirshick/py-faster-rcnn. + # Arguments + recall: The recall curve (list). + precision: The precision curve (list). + # Returns + The average precision as computed in py-faster-rcnn. + """ + # correct AP calculation + # first append sentinel values at the end + + mrec = np.concatenate(([0.], recall, [1.])) + mpre = np.concatenate(([0.], precision, [0.])) + + # compute the precision envelope + for i in range(mpre.size - 1, 0, -1): + mpre[i - 1] = np.maximum(mpre[i - 1], mpre[i]) + + # to calculate area under PR curve, look for points + # where X axis (recall) changes value + i = np.where(mrec[1:] != mrec[:-1])[0] + + # and sum (\Delta recall) * prec + ap = np.sum((mrec[i + 1] - mrec[i]) * mpre[i + 1]) + return ap + + +def bbox_iou(box1, box2, x1y1x2y2=False): + """ + Returns the IoU of two bounding boxes + """ + N, M = len(box1), len(box2) + if x1y1x2y2: + # Get the coordinates of bounding boxes + b1_x1, b1_y1, b1_x2, b1_y2 = box1[:, 0], box1[:, 1], box1[:, 2], box1[:, 3] + b2_x1, b2_y1, b2_x2, b2_y2 = box2[:, 0], box2[:, 1], box2[:, 2], box2[:, 3] + else: + # Transform from center and width to exact coordinates + b1_x1, b1_x2 = box1[:, 0] - box1[:, 2] / 2, box1[:, 0] + box1[:, 2] / 2 + b1_y1, b1_y2 = box1[:, 1] - box1[:, 3] / 2, box1[:, 1] + box1[:, 3] / 2 + b2_x1, b2_x2 = box2[:, 0] - box2[:, 2] / 2, box2[:, 0] + box2[:, 2] / 2 + b2_y1, b2_y2 = box2[:, 1] - box2[:, 3] / 2, box2[:, 1] + box2[:, 3] / 2 + + # get the coordinates of the intersection rectangle + inter_rect_x1 = torch.max(b1_x1.unsqueeze(1), b2_x1) + inter_rect_y1 = torch.max(b1_y1.unsqueeze(1), b2_y1) + inter_rect_x2 = torch.min(b1_x2.unsqueeze(1), b2_x2) + inter_rect_y2 = torch.min(b1_y2.unsqueeze(1), b2_y2) + # Intersection area + inter_area = torch.clamp(inter_rect_x2 - inter_rect_x1, 0) * torch.clamp(inter_rect_y2 - inter_rect_y1, 0) + # Union Area + b1_area = ((b1_x2 - b1_x1) * (b1_y2 - b1_y1)) + b1_area = ((b1_x2 - b1_x1) * (b1_y2 - b1_y1)).view(-1,1).expand(N,M) + b2_area = ((b2_x2 - b2_x1) * (b2_y2 - b2_y1)).view(1,-1).expand(N,M) + + return inter_area / (b1_area + b2_area - inter_area + 1e-16) + + +def build_targets_max(target, anchor_wh, nA, nC, nGh, nGw): + """ + returns nT, nCorrect, tx, ty, tw, th, tconf, tcls + """ + nB = len(target) # number of images in batch + + txy = torch.zeros(nB, nA, nGh, nGw, 2).cuda() # batch size, anchors, grid size + twh = torch.zeros(nB, nA, nGh, nGw, 2).cuda() + tconf = torch.LongTensor(nB, nA, nGh, nGw).fill_(0).cuda() + tcls = torch.ByteTensor(nB, nA, nGh, nGw, nC).fill_(0).cuda() # nC = number of classes + tid = torch.LongTensor(nB, nA, nGh, nGw, 1).fill_(-1).cuda() + for b in range(nB): + t = target[b] + t_id = t[:, 1].clone().long().cuda() + t = t[:,[0,2,3,4,5]] + nTb = len(t) # number of targets + if nTb == 0: + continue + + #gxy, gwh = t[:, 1:3] * nG, t[:, 3:5] * nG + gxy, gwh = t[: , 1:3].clone() , t[:, 3:5].clone() + gxy[:, 0] = gxy[:, 0] * nGw + gxy[:, 1] = gxy[:, 1] * nGh + gwh[:, 0] = gwh[:, 0] * nGw + gwh[:, 1] = gwh[:, 1] * nGh + gi = torch.clamp(gxy[:, 0], min=0, max=nGw -1).long() + gj = torch.clamp(gxy[:, 1], min=0, max=nGh -1).long() + + # Get grid box indices and prevent overflows (i.e. 13.01 on 13 anchors) + #gi, gj = torch.clamp(gxy.long(), min=0, max=nG - 1).t() + #gi, gj = gxy.long().t() + + # iou of targets-anchors (using wh only) + box1 = gwh + box2 = anchor_wh.unsqueeze(1) + inter_area = torch.min(box1, box2).prod(2) + iou = inter_area / (box1.prod(1) + box2.prod(2) - inter_area + 1e-16) + + # Select best iou_pred and anchor + iou_best, a = iou.max(0) # best anchor [0-2] for each target + + # Select best unique target-anchor combinations + if nTb > 1: + _, iou_order = torch.sort(-iou_best) # best to worst + + # Unique anchor selection + u = torch.stack((gi, gj, a), 0)[:, iou_order] + # _, first_unique = np.unique(u, axis=1, return_index=True) # first unique indices + first_unique = return_torch_unique_index(u, torch.unique(u, dim=1)) # torch alternative + i = iou_order[first_unique] + # best anchor must share significant commonality (iou) with target + i = i[iou_best[i] > 0.60] # TODO: examine arbitrary threshold + if len(i) == 0: + continue + + a, gj, gi, t = a[i], gj[i], gi[i], t[i] + t_id = t_id[i] + if len(t.shape) == 1: + t = t.view(1, 5) + else: + if iou_best < 0.60: + continue + + tc, gxy, gwh = t[:, 0].long(), t[:, 1:3].clone(), t[:, 3:5].clone() + gxy[:, 0] = gxy[:, 0] * nGw + gxy[:, 1] = gxy[:, 1] * nGh + gwh[:, 0] = gwh[:, 0] * nGw + gwh[:, 1] = gwh[:, 1] * nGh + + # XY coordinates + txy[b, a, gj, gi] = gxy - gxy.floor() + + # Width and height + twh[b, a, gj, gi] = torch.log(gwh / anchor_wh[a]) # yolo method + # twh[b, a, gj, gi] = torch.sqrt(gwh / anchor_wh[a]) / 2 # power method + + # One-hot encoding of label + tcls[b, a, gj, gi, tc] = 1 + tconf[b, a, gj, gi] = 1 + tid[b, a, gj, gi] = t_id.unsqueeze(1) + tbox = torch.cat([txy, twh], -1) + return tconf, tbox, tid + + + + +def generate_anchor(nGh, nGw, anchor_wh): + nA = len(anchor_wh) + yy, xx =torch.meshgrid(torch.arange(nGh), torch.arange(nGw)) + xx, yy = xx.cuda(), yy.cuda() + + mesh = torch.stack([xx, yy], dim=0) # Shape 2, nGh, nGw + mesh = mesh.unsqueeze(0).repeat(nA,1,1,1).float() # Shape nA x 2 x nGh x nGw + anchor_offset_mesh = anchor_wh.unsqueeze(-1).unsqueeze(-1).repeat(1, 1, nGh,nGw) # Shape nA x 2 x nGh x nGw + anchor_mesh = torch.cat([mesh, anchor_offset_mesh], dim=1) # Shape nA x 4 x nGh x nGw + return anchor_mesh + +def encode_delta(gt_box_list, fg_anchor_list): + px, py, pw, ph = fg_anchor_list[:, 0], fg_anchor_list[:,1], \ + fg_anchor_list[:, 2], fg_anchor_list[:,3] + gx, gy, gw, gh = gt_box_list[:, 0], gt_box_list[:, 1], \ + gt_box_list[:, 2], gt_box_list[:, 3] + dx = (gx - px) / pw + dy = (gy - py) / ph + dw = torch.log(gw/pw) + dh = torch.log(gh/ph) + return torch.stack([dx, dy, dw, dh], dim=1) + +def decode_delta(delta, fg_anchor_list): + px, py, pw, ph = fg_anchor_list[:, 0], fg_anchor_list[:,1], \ + fg_anchor_list[:, 2], fg_anchor_list[:,3] + dx, dy, dw, dh = delta[:, 0], delta[:, 1], delta[:, 2], delta[:, 3] + gx = pw * dx + px + gy = ph * dy + py + gw = pw * torch.exp(dw) + gh = ph * torch.exp(dh) + return torch.stack([gx, gy, gw, gh], dim=1) + +def decode_delta_map(delta_map, anchors): + ''' + :param: delta_map, shape (nB, nA, nGh, nGw, 4) + :param: anchors, shape (nA,4) + ''' + nB, nA, nGh, nGw, _ = delta_map.shape + anchor_mesh = generate_anchor(nGh, nGw, anchors) + anchor_mesh = anchor_mesh.permute(0,2,3,1).contiguous() # Shpae (nA x nGh x nGw) x 4 + anchor_mesh = anchor_mesh.unsqueeze(0).repeat(nB,1,1,1,1) + pred_list = decode_delta(delta_map.view(-1,4), anchor_mesh.view(-1,4)) + pred_map = pred_list.view(nB, nA, nGh, nGw, 4) + return pred_map + + +def pooling_nms(heatmap, kernel=1): + pad = (kernel -1 ) // 2 + hmax = F.max_pool2d(heatmap, (kernel, kernel), stride=1, padding=pad) + keep = (hmax == heatmap).float() + return keep * heatmap + + +def non_max_suppression(prediction, conf_thres=0.5, nms_thres=0.2): + """ + Removes detections with lower object confidence score than 'conf_thres' + Non-Maximum Suppression to further filter detections. + Returns detections with shape: + (x1, y1, x2, y2, object_conf, class_score, class_pred) + """ + + output = [None for _ in range(len(prediction))] + for image_i, pred in enumerate(prediction): + # Filter out confidence scores below threshold + # Get score and class with highest confidence + + v = pred[:, 4] > conf_thres + v = v.nonzero().squeeze() + if len(v.shape) == 0: + v = v.unsqueeze(0) + + pred = pred[v] + + # If none are remaining => process next image + nP = pred.shape[0] + if not nP: + continue + # From (center x, center y, width, height) to (x1, y1, x2, y2) + pred[:, :4] = xywh2xyxy(pred[:, :4]) + nms_indices = nms(pred[:, :4], pred[:, 4], nms_thres) + det_max = pred[nms_indices] + + if len(det_max) > 0: + # Add max detections to outputs + output[image_i] = det_max if output[image_i] is None else torch.cat((output[image_i], det_max)) + + return output + + +def return_torch_unique_index(u, uv): + n = uv.shape[1] # number of columns + first_unique = torch.zeros(n, device=u.device).long() + for j in range(n): + first_unique[j] = (uv[:, j:j + 1] == u).all(0).nonzero()[0] + + return first_unique + + +def strip_optimizer_from_checkpoint(filename='weights/best.pt'): + # Strip optimizer from *.pt files for lighter files (reduced by 2/3 size) + + a = torch.load(filename, map_location='cpu') + a['optimizer'] = [] + torch.save(a, filename.replace('.pt', '_lite.pt')) + + +def plot_results(): + # Plot YOLO training results file 'results.txt' + # import os; os.system('wget https://storage.googleapis.com/ultralytics/yolov3/results_v1.txt') + + plt.figure(figsize=(14, 7)) + s = ['X + Y', 'Width + Height', 'Confidence', 'Classification', 'Total Loss', 'mAP', 'Recall', 'Precision'] + files = sorted(glob.glob('results*.txt')) + for f in files: + results = np.loadtxt(f, usecols=[2, 3, 4, 5, 6, 9, 10, 11]).T # column 11 is mAP + x = range(1, results.shape[1]) + for i in range(8): + plt.subplot(2, 4, i + 1) + plt.plot(x, results[i, x], marker='.', label=f) + plt.title(s[i]) + if i == 0: + plt.legend() diff --git a/trackers/hybrid_sort_tracker/association.py b/trackers/hybrid_sort_tracker/association.py new file mode 100644 index 0000000000000000000000000000000000000000..9561ea98728a0818373592dbaa9a0990886ae983 --- /dev/null +++ b/trackers/hybrid_sort_tracker/association.py @@ -0,0 +1,800 @@ +import os +import numpy as np + +def intersection_batch(bboxes1, bboxes2): + bboxes2 = np.expand_dims(bboxes2, 0) + bboxes1 = np.expand_dims(bboxes1, 1) + + xx1 = np.maximum(bboxes1[..., 0], bboxes2[..., 0]) + yy1 = np.maximum(bboxes1[..., 1], bboxes2[..., 1]) + xx2 = np.minimum(bboxes1[..., 2], bboxes2[..., 2]) + yy2 = np.minimum(bboxes1[..., 3], bboxes2[..., 3]) + w = np.maximum(0., xx2 - xx1) + h = np.maximum(0., yy2 - yy1) + intersections = w * h + return intersections + +def box_area(bbox): + area = (bbox[2] - bbox[0]) * (bbox[3] - bbox[1]) + return area + +def iou_batch(bboxes1, bboxes2): + """ + From SORT: Computes IOU between two bboxes in the form [x1,y1,x2,y2] + """ + bboxes2 = np.expand_dims(bboxes2, 0) + bboxes1 = np.expand_dims(bboxes1, 1) + + xx1 = np.maximum(bboxes1[..., 0], bboxes2[..., 0]) + yy1 = np.maximum(bboxes1[..., 1], bboxes2[..., 1]) + xx2 = np.minimum(bboxes1[..., 2], bboxes2[..., 2]) + yy2 = np.minimum(bboxes1[..., 3], bboxes2[..., 3]) + w = np.maximum(0., xx2 - xx1) + h = np.maximum(0., yy2 - yy1) + wh = w * h + o = wh / ((bboxes1[..., 2] - bboxes1[..., 0]) * (bboxes1[..., 3] - bboxes1[..., 1]) + + (bboxes2[..., 2] - bboxes2[..., 0]) * (bboxes2[..., 3] - bboxes2[..., 1]) - wh) + return(o) + + +def cal_score_dif_batch(bboxes1, bboxes2): + """ + From SORT: Computes IOU between two bboxes in the form [x1,y1,x2,y2] + """ + bboxes2 = np.expand_dims(bboxes2, 0) + bboxes1 = np.expand_dims(bboxes1, 1) + + score2 = bboxes2[..., 4] + score1 = bboxes1[..., 4] + + return (abs(score2 - score1)) + +def cal_score_dif_batch_two_score(bboxes1, bboxes2): + """ + From SORT: Computes IOU between two bboxes in the form [x1,y1,x2,y2] + """ + bboxes2 = np.expand_dims(bboxes2, 0) + bboxes1 = np.expand_dims(bboxes1, 1) + + score2 = bboxes2[..., 5] + score1 = bboxes1[..., 4] + + return (abs(score2 - score1)) + +def hmiou(bboxes1, bboxes2): + """ + Height_Modulated_IoU + """ + bboxes2 = np.expand_dims(bboxes2, 0) + bboxes1 = np.expand_dims(bboxes1, 1) + + yy11 = np.maximum(bboxes1[..., 1], bboxes2[..., 1]) + yy12 = np.minimum(bboxes1[..., 3], bboxes2[..., 3]) + + yy21 = np.minimum(bboxes1[..., 1], bboxes2[..., 1]) + yy22 = np.maximum(bboxes1[..., 3], bboxes2[..., 3]) + o = (yy12 - yy11) / (yy22 - yy21) + + xx1 = np.maximum(bboxes1[..., 0], bboxes2[..., 0]) + yy1 = np.maximum(bboxes1[..., 1], bboxes2[..., 1]) + xx2 = np.minimum(bboxes1[..., 2], bboxes2[..., 2]) + yy2 = np.minimum(bboxes1[..., 3], bboxes2[..., 3]) + w = np.maximum(0., xx2 - xx1) + h = np.maximum(0., yy2 - yy1) + wh = w * h + o *= wh / ((bboxes1[..., 2] - bboxes1[..., 0]) * (bboxes1[..., 3] - bboxes1[..., 1]) + + (bboxes2[..., 2] - bboxes2[..., 0]) * (bboxes2[..., 3] - bboxes2[..., 1]) - wh) + return (o) + +def giou_batch(bboxes1, bboxes2): + """ + :param bbox_p: predict of bbox(N,4)(x1,y1,x2,y2) + :param bbox_g: groundtruth of bbox(N,4)(x1,y1,x2,y2) + :return: + """ + # for details should go to https://arxiv.org/pdf/1902.09630.pdf + # ensure predict's bbox form + bboxes2 = np.expand_dims(bboxes2, 0) + bboxes1 = np.expand_dims(bboxes1, 1) + + xx1 = np.maximum(bboxes1[..., 0], bboxes2[..., 0]) + yy1 = np.maximum(bboxes1[..., 1], bboxes2[..., 1]) + xx2 = np.minimum(bboxes1[..., 2], bboxes2[..., 2]) + yy2 = np.minimum(bboxes1[..., 3], bboxes2[..., 3]) + w = np.maximum(0., xx2 - xx1) + h = np.maximum(0., yy2 - yy1) + wh = w * h + iou = wh / ((bboxes1[..., 2] - bboxes1[..., 0]) * (bboxes1[..., 3] - bboxes1[..., 1]) + + (bboxes2[..., 2] - bboxes2[..., 0]) * (bboxes2[..., 3] - bboxes2[..., 1]) - wh) + + xxc1 = np.minimum(bboxes1[..., 0], bboxes2[..., 0]) + yyc1 = np.minimum(bboxes1[..., 1], bboxes2[..., 1]) + xxc2 = np.maximum(bboxes1[..., 2], bboxes2[..., 2]) + yyc2 = np.maximum(bboxes1[..., 3], bboxes2[..., 3]) + wc = xxc2 - xxc1 + hc = yyc2 - yyc1 + assert((wc > 0).all() and (hc > 0).all()) + area_enclose = wc * hc + giou = iou - (area_enclose - wh) / area_enclose + giou = (giou + 1.)/2.0 # resize from (-1,1) to (0,1) + return giou + +def giou_batch_true(bboxes1, bboxes2): + """ + :param bbox_p: predict of bbox(N,4)(x1,y1,x2,y2) + :param bbox_g: groundtruth of bbox(N,4)(x1,y1,x2,y2) + :return: + """ + # for details should go to https://arxiv.org/pdf/1902.09630.pdf + # ensure predict's bbox form + bboxes2 = np.expand_dims(bboxes2, 0) + bboxes1 = np.expand_dims(bboxes1, 1) + + xx1 = np.maximum(bboxes1[..., 0], bboxes2[..., 0]) + yy1 = np.maximum(bboxes1[..., 1], bboxes2[..., 1]) + xx2 = np.minimum(bboxes1[..., 2], bboxes2[..., 2]) + yy2 = np.minimum(bboxes1[..., 3], bboxes2[..., 3]) + w = np.maximum(0., xx2 - xx1) + h = np.maximum(0., yy2 - yy1) + wh = w * h + union = ((bboxes1[..., 2] - bboxes1[..., 0]) * (bboxes1[..., 3] - bboxes1[..., 1]) + + (bboxes2[..., 2] - bboxes2[..., 0]) * (bboxes2[..., 3] - bboxes2[..., 1]) - wh) + iou = wh / union + + xxc1 = np.minimum(bboxes1[..., 0], bboxes2[..., 0]) + yyc1 = np.minimum(bboxes1[..., 1], bboxes2[..., 1]) + xxc2 = np.maximum(bboxes1[..., 2], bboxes2[..., 2]) + yyc2 = np.maximum(bboxes1[..., 3], bboxes2[..., 3]) + wc = xxc2 - xxc1 + hc = yyc2 - yyc1 + assert((wc > 0).all() and (hc > 0).all()) + area_enclose = wc * hc + giou = iou - (area_enclose - union) / area_enclose + giou = (giou + 1.)/2.0 # resize from (-1,1) to (0,1) + return giou + +def diou_batch(bboxes1, bboxes2): + """ + :param bbox_p: predict of bbox(N,4)(x1,y1,x2,y2) + :param bbox_g: groundtruth of bbox(N,4)(x1,y1,x2,y2) + :return: + """ + # for details should go to https://arxiv.org/pdf/1902.09630.pdf + # ensure predict's bbox form + bboxes2 = np.expand_dims(bboxes2, 0) + bboxes1 = np.expand_dims(bboxes1, 1) + + # calculate the intersection box + xx1 = np.maximum(bboxes1[..., 0], bboxes2[..., 0]) + yy1 = np.maximum(bboxes1[..., 1], bboxes2[..., 1]) + xx2 = np.minimum(bboxes1[..., 2], bboxes2[..., 2]) + yy2 = np.minimum(bboxes1[..., 3], bboxes2[..., 3]) + w = np.maximum(0., xx2 - xx1) + h = np.maximum(0., yy2 - yy1) + wh = w * h + iou = wh / ((bboxes1[..., 2] - bboxes1[..., 0]) * (bboxes1[..., 3] - bboxes1[..., 1]) + + (bboxes2[..., 2] - bboxes2[..., 0]) * (bboxes2[..., 3] - bboxes2[..., 1]) - wh) + + centerx1 = (bboxes1[..., 0] + bboxes1[..., 2]) / 2.0 + centery1 = (bboxes1[..., 1] + bboxes1[..., 3]) / 2.0 + centerx2 = (bboxes2[..., 0] + bboxes2[..., 2]) / 2.0 + centery2 = (bboxes2[..., 1] + bboxes2[..., 3]) / 2.0 + + inner_diag = (centerx1 - centerx2) ** 2 + (centery1 - centery2) ** 2 + + xxc1 = np.minimum(bboxes1[..., 0], bboxes2[..., 0]) + yyc1 = np.minimum(bboxes1[..., 1], bboxes2[..., 1]) + xxc2 = np.maximum(bboxes1[..., 2], bboxes2[..., 2]) + yyc2 = np.maximum(bboxes1[..., 3], bboxes2[..., 3]) + + outer_diag = (xxc2 - xxc1) ** 2 + (yyc2 - yyc1) ** 2 + diou = iou - inner_diag / outer_diag + + return (diou + 1) / 2.0 # resize from (-1,1) to (0,1) + +def ciou_batch(bboxes1, bboxes2): + """ + :param bbox_p: predict of bbox(N,4)(x1,y1,x2,y2) + :param bbox_g: groundtruth of bbox(N,4)(x1,y1,x2,y2) + :return: + """ + # for details should go to https://arxiv.org/pdf/1902.09630.pdf + # ensure predict's bbox form + bboxes2 = np.expand_dims(bboxes2, 0) + bboxes1 = np.expand_dims(bboxes1, 1) + + # calculate the intersection box + xx1 = np.maximum(bboxes1[..., 0], bboxes2[..., 0]) + yy1 = np.maximum(bboxes1[..., 1], bboxes2[..., 1]) + xx2 = np.minimum(bboxes1[..., 2], bboxes2[..., 2]) + yy2 = np.minimum(bboxes1[..., 3], bboxes2[..., 3]) + w = np.maximum(0., xx2 - xx1) + h = np.maximum(0., yy2 - yy1) + wh = w * h + iou = wh / ((bboxes1[..., 2] - bboxes1[..., 0]) * (bboxes1[..., 3] - bboxes1[..., 1]) + + (bboxes2[..., 2] - bboxes2[..., 0]) * (bboxes2[..., 3] - bboxes2[..., 1]) - wh) + + centerx1 = (bboxes1[..., 0] + bboxes1[..., 2]) / 2.0 + centery1 = (bboxes1[..., 1] + bboxes1[..., 3]) / 2.0 + centerx2 = (bboxes2[..., 0] + bboxes2[..., 2]) / 2.0 + centery2 = (bboxes2[..., 1] + bboxes2[..., 3]) / 2.0 + + inner_diag = (centerx1 - centerx2) ** 2 + (centery1 - centery2) ** 2 + + xxc1 = np.minimum(bboxes1[..., 0], bboxes2[..., 0]) + yyc1 = np.minimum(bboxes1[..., 1], bboxes2[..., 1]) + xxc2 = np.maximum(bboxes1[..., 2], bboxes2[..., 2]) + yyc2 = np.maximum(bboxes1[..., 3], bboxes2[..., 3]) + + outer_diag = (xxc2 - xxc1) ** 2 + (yyc2 - yyc1) ** 2 + + w1 = bboxes1[..., 2] - bboxes1[..., 0] + h1 = bboxes1[..., 3] - bboxes1[..., 1] + w2 = bboxes2[..., 2] - bboxes2[..., 0] + h2 = bboxes2[..., 3] - bboxes2[..., 1] + + # prevent dividing over zero. add one pixel shift + h2 = h2 + 1. + h1 = h1 + 1. + arctan = np.arctan(w2/h2) - np.arctan(w1/h1) + v = (4 / (np.pi ** 2)) * (arctan ** 2) + S = 1 - iou + alpha = v / (S+v) + ciou = iou - inner_diag / outer_diag - alpha * v + + return (ciou + 1) / 2.0 # resize from (-1,1) to (0,1) + + +def ct_dist(bboxes1, bboxes2): + """ + Measure the center distance between two sets of bounding boxes, + this is a coarse implementation, we don't recommend using it only + for association, which can be unstable and sensitive to frame rate + and object speed. + """ + bboxes2 = np.expand_dims(bboxes2, 0) + bboxes1 = np.expand_dims(bboxes1, 1) + + centerx1 = (bboxes1[..., 0] + bboxes1[..., 2]) / 2.0 + centery1 = (bboxes1[..., 1] + bboxes1[..., 3]) / 2.0 + centerx2 = (bboxes2[..., 0] + bboxes2[..., 2]) / 2.0 + centery2 = (bboxes2[..., 1] + bboxes2[..., 3]) / 2.0 + + ct_dist2 = (centerx1 - centerx2) ** 2 + (centery1 - centery2) ** 2 + + ct_dist = np.sqrt(ct_dist2) + + # The linear rescaling is a naive version and needs more study + ct_dist = ct_dist / ct_dist.max() + return ct_dist.max() - ct_dist # resize to (0,1) + + +def speed_direction_batch(dets, tracks): + """ + batch formulation of function 'speed_direction', compute normalized speed from batch bboxes + @param dets: + @param tracks: + @return: normalized speed in batch + """ + tracks = tracks[..., np.newaxis] + CX1, CY1 = (dets[:,0] + dets[:,2])/2.0, (dets[:,1]+dets[:,3])/2.0 + CX2, CY2 = (tracks[:,0] + tracks[:,2]) /2.0, (tracks[:,1]+tracks[:,3])/2.0 + dx = CX1 - CX2 + dy = CY1 - CY2 + norm = np.sqrt(dx**2 + dy**2) + 1e-6 + dx = dx / norm + dy = dy / norm + return dy, dx # size: num_track x num_det + + +def linear_assignment(cost_matrix, thresh=0.): + try: # [hgx0411] goes here! + import lap + if thresh != 0: + _, x, y = lap.lapjv(cost_matrix, extend_cost=True, cost_limit=thresh) + else: + _, x, y = lap.lapjv(cost_matrix, extend_cost=True) + return np.array([[y[i], i] for i in x if i >= 0]) + except ImportError: + from scipy.optimize import linear_sum_assignment + x, y = linear_sum_assignment(cost_matrix) + return np.array(list(zip(x, y))) + + +def associate_detections_to_trackers(detections,trackers,iou_threshold = 0.3): + """ + Assigns detections to tracked object (both represented as bounding boxes) + Returns 3 lists of matches, unmatched_detections and unmatched_trackers + """ + if(len(trackers)==0): + return np.empty((0,2),dtype=int), np.arange(len(detections)), np.empty((0,5),dtype=int) + + iou_matrix = iou_batch(detections, trackers) + + if min(iou_matrix.shape) > 0: + a = (iou_matrix > iou_threshold).astype(np.int32) + if a.sum(1).max() == 1 and a.sum(0).max() == 1: + matched_indices = np.stack(np.where(a), axis=1) + else: + matched_indices = linear_assignment(-iou_matrix) + else: + matched_indices = np.empty(shape=(0,2)) + + unmatched_detections = [] + for d, det in enumerate(detections): + if(d not in matched_indices[:,0]): + unmatched_detections.append(d) + unmatched_trackers = [] + for t, trk in enumerate(trackers): + if(t not in matched_indices[:,1]): + unmatched_trackers.append(t) + + #filter out matched with low IOU + matches = [] + for m in matched_indices: + if(iou_matrix[m[0], m[1]] 0: + a = (iou_matrix > iou_threshold).astype(np.int32) + if a.sum(1).max() == 1 and a.sum(0).max() == 1: + matched_indices = np.stack(np.where(a), axis=1) + else: + matched_indices = linear_assignment(-(iou_matrix+angle_diff_cost)) + else: + matched_indices = np.empty(shape=(0,2)) + + unmatched_detections = [] + for d, det in enumerate(detections): + if(d not in matched_indices[:,0]): + unmatched_detections.append(d) + unmatched_trackers = [] + for t, trk in enumerate(trackers): + if(t not in matched_indices[:,1]): + unmatched_trackers.append(t) + + # filter out matched with low IOU + matches = [] + for m in matched_indices: + if(iou_matrix[m[0], m[1]] 0: + a = (iou_matrix > iou_threshold).astype(np.int32) + if a.sum(1).max() == 1 and a.sum(0).max() == 1: + matched_indices = np.stack(np.where(a), axis=1) + else: + matched_indices = linear_assignment(-(iou_matrix + angle_diff_cost)) + else: + matched_indices = np.empty(shape=(0, 2)) + + unmatched_detections = [] + for d, det in enumerate(detections): + if (d not in matched_indices[:, 0]): + unmatched_detections.append(d) + unmatched_trackers = [] + for t, trk in enumerate(trackers): + if (t not in matched_indices[:, 1]): + unmatched_trackers.append(t) + + # filter out matched with low IOU + matches = [] + for m in matched_indices: + if (iou_matrix[m[0], m[1]] < iou_threshold): + unmatched_detections.append(m[0]) + unmatched_trackers.append(m[1]) + else: + matches.append(m.reshape(1, 2)) + if (len(matches) == 0): + matches = np.empty((0, 2), dtype=int) + else: + matches = np.concatenate(matches, axis=0) + + return matches, np.array(unmatched_detections), np.array(unmatched_trackers) + +def associate_4_points_with_score(detections, trackers, iou_threshold, lt, rt, lb, rb, previous_obs, vdc_weight, iou_type=None, args=None): + if (len(trackers) == 0): + return np.empty((0, 2), dtype=int), np.arange(len(detections)), np.empty((0, 5), dtype=int) + + Y1, X1 = speed_direction_batch_lt(detections, previous_obs) + Y2, X2 = speed_direction_batch_rt(detections, previous_obs) + Y3, X3 = speed_direction_batch_lb(detections, previous_obs) + Y4, X4 = speed_direction_batch_rb(detections, previous_obs) + cost_lt = cost_vel(Y1, X1, trackers, lt, detections, previous_obs, vdc_weight) + cost_rt = cost_vel(Y2, X2, trackers, rt, detections, previous_obs, vdc_weight) + cost_lb = cost_vel(Y3, X3, trackers, lb, detections, previous_obs, vdc_weight) + cost_rb = cost_vel(Y4, X4, trackers, rb, detections, previous_obs, vdc_weight) + iou_matrix = iou_type(detections, trackers) + score_dif = cal_score_dif_batch(detections, trackers) + + angle_diff_cost = cost_lt + cost_rt + cost_lb + cost_rb + + # TCM + angle_diff_cost -= score_dif * args.TCM_first_step_weight + + if min(iou_matrix.shape) > 0: + a = (iou_matrix > iou_threshold).astype(np.int32) + if a.sum(1).max() == 1 and a.sum(0).max() == 1: + matched_indices = np.stack(np.where(a), axis=1) + else: + matched_indices = linear_assignment(-(iou_matrix + angle_diff_cost)) + else: + matched_indices = np.empty(shape=(0, 2)) + + unmatched_detections = [] + for d, det in enumerate(detections): + if (d not in matched_indices[:, 0]): + unmatched_detections.append(d) + unmatched_trackers = [] + for t, trk in enumerate(trackers): + if (t not in matched_indices[:, 1]): + unmatched_trackers.append(t) + + # filter out matched with low IOU + matches = [] + for m in matched_indices: + if (iou_matrix[m[0], m[1]] < iou_threshold): + unmatched_detections.append(m[0]) + unmatched_trackers.append(m[1]) + else: + matches.append(m.reshape(1, 2)) + if (len(matches) == 0): + matches = np.empty((0, 2), dtype=int) + else: + matches = np.concatenate(matches, axis=0) + + return matches, np.array(unmatched_detections), np.array(unmatched_trackers) + +def associate_4_points_with_score_with_reid(detections, trackers, iou_threshold, lt, rt, lb, rb, previous_obs, vdc_weight, + iou_type=None, args=None,emb_cost=None, weights=(1.0, 0), thresh=0.8, + long_emb_dists=None, with_longterm_reid=False, + longterm_reid_weight=0.0, with_longterm_reid_correction=False, + longterm_reid_correction_thresh=0.0, dataset="dancetrack"): + if (len(trackers) == 0): + return np.empty((0, 2), dtype=int), np.arange(len(detections)), np.empty((0, 5), dtype=int) + + Y1, X1 = speed_direction_batch_lt(detections, previous_obs) + Y2, X2 = speed_direction_batch_rt(detections, previous_obs) + Y3, X3 = speed_direction_batch_lb(detections, previous_obs) + Y4, X4 = speed_direction_batch_rb(detections, previous_obs) + cost_lt = cost_vel(Y1, X1, trackers, lt, detections, previous_obs, vdc_weight) + cost_rt = cost_vel(Y2, X2, trackers, rt, detections, previous_obs, vdc_weight) + cost_lb = cost_vel(Y3, X3, trackers, lb, detections, previous_obs, vdc_weight) + cost_rb = cost_vel(Y4, X4, trackers, rb, detections, previous_obs, vdc_weight) + iou_matrix = iou_type(detections, trackers) + score_dif = cal_score_dif_batch(detections, trackers) + + angle_diff_cost = cost_lt + cost_rt + cost_lb + cost_rb + + # TCM + angle_diff_cost -= score_dif * args.TCM_first_step_weight + + if min(iou_matrix.shape) > 0: + if emb_cost is None: + a = (iou_matrix > iou_threshold).astype(np.int32) + if a.sum(1).max() == 1 and a.sum(0).max() == 1: + matched_indices = np.stack(np.where(a), axis=1) + else: + matched_indices = linear_assignment(-(iou_matrix + angle_diff_cost)) + else: + if not with_longterm_reid: + matched_indices = linear_assignment(weights[0] * (-(iou_matrix + angle_diff_cost)) + weights[1] * emb_cost) # , thresh=thresh + else: # long-term reid feats + matched_indices = linear_assignment(weights[0] * (-(iou_matrix + angle_diff_cost)) + + weights[1] * emb_cost + longterm_reid_weight * long_emb_dists) # , thresh=thresh + + if matched_indices.size == 0: + matched_indices = np.empty(shape=(0, 2)) + else: + matched_indices = np.empty(shape=(0, 2)) + + unmatched_detections = [] + for d, det in enumerate(detections): + if (d not in matched_indices[:, 0]): + unmatched_detections.append(d) + unmatched_trackers = [] + for t, trk in enumerate(trackers): + if (t not in matched_indices[:, 1]): + unmatched_trackers.append(t) + + # filter out matched with low IOU (and long-term ReID feats) + matches = [] + # iou_matrix_thre = iou_matrix if dataset == "dancetrack" else iou_matrix - score_dif + iou_matrix_thre = iou_matrix - score_dif + if with_longterm_reid_correction: + for m in matched_indices: + if (emb_cost[m[0], m[1]] > longterm_reid_correction_thresh) and (iou_matrix_thre[m[0], m[1]] < iou_threshold): + print("correction:", emb_cost[m[0], m[1]]) + unmatched_detections.append(m[0]) + unmatched_trackers.append(m[1]) + else: + matches.append(m.reshape(1, 2)) + else: + for m in matched_indices: + if (iou_matrix_thre[m[0], m[1]] < iou_threshold): + unmatched_detections.append(m[0]) + unmatched_trackers.append(m[1]) + else: + matches.append(m.reshape(1, 2)) + + if (len(matches) == 0): + matches = np.empty((0, 2), dtype=int) + else: + matches = np.concatenate(matches, axis=0) + + return matches, np.array(unmatched_detections), np.array(unmatched_trackers) + + +def associate_kitti(detections, trackers, det_cates, iou_threshold, + velocities, previous_obs, vdc_weight): + if(len(trackers)==0): + return np.empty((0,2),dtype=int), np.arange(len(detections)), np.empty((0,5),dtype=int) + + """ + Cost from the velocity direction consistency + """ + Y, X = speed_direction_batch(detections, previous_obs) + inertia_Y, inertia_X = velocities[:,0], velocities[:,1] + inertia_Y = np.repeat(inertia_Y[:, np.newaxis], Y.shape[1], axis=1) + inertia_X = np.repeat(inertia_X[:, np.newaxis], X.shape[1], axis=1) + diff_angle_cos = inertia_X * X + inertia_Y * Y + diff_angle_cos = np.clip(diff_angle_cos, a_min=-1, a_max=1) + diff_angle = np.arccos(diff_angle_cos) + diff_angle = (np.pi /2.0 - np.abs(diff_angle)) / np.pi + + valid_mask = np.ones(previous_obs.shape[0]) + valid_mask[np.where(previous_obs[:,4]<0)]=0 + valid_mask = np.repeat(valid_mask[:, np.newaxis], X.shape[1], axis=1) + + scores = np.repeat(detections[:,-1][:, np.newaxis], trackers.shape[0], axis=1) + angle_diff_cost = (valid_mask * diff_angle) * vdc_weight + angle_diff_cost = angle_diff_cost.T + angle_diff_cost = angle_diff_cost * scores + + """ + Cost from IoU + """ + iou_matrix = iou_batch(detections, trackers) + + + """ + With multiple categories, generate the cost for catgory mismatch + """ + num_dets = detections.shape[0] + num_trk = trackers.shape[0] + cate_matrix = np.zeros((num_dets, num_trk)) + for i in range(num_dets): + for j in range(num_trk): + if det_cates[i] != trackers[j, 4]: + cate_matrix[i][j] = -1e6 + + cost_matrix = - iou_matrix -angle_diff_cost - cate_matrix + + if min(iou_matrix.shape) > 0: + a = (iou_matrix > iou_threshold).astype(np.int32) + if a.sum(1).max() == 1 and a.sum(0).max() == 1: + matched_indices = np.stack(np.where(a), axis=1) + else: + matched_indices = linear_assignment(cost_matrix) + else: + matched_indices = np.empty(shape=(0,2)) + + unmatched_detections = [] + for d, det in enumerate(detections): + if(d not in matched_indices[:,0]): + unmatched_detections.append(d) + unmatched_trackers = [] + for t, trk in enumerate(trackers): + if(t not in matched_indices[:,1]): + unmatched_trackers.append(t) + + #filter out matched with low IOU + matches = [] + for m in matched_indices: + if(iou_matrix[m[0], m[1]] gating_threshold] = np.inf + cost_matrix[row] = lambda_ * cost_matrix[row] + (1 - lambda_) * gating_distance + return cost_matrix + +# [hgx0411] compute embedding distance and gating, borrowed and modified from FairMOT +import lap +def linear_assignment_appearance(cost_matrix, thresh): + if cost_matrix.size == 0: + return np.empty((0, 2), dtype=int), tuple(range(cost_matrix.shape[0])), tuple(range(cost_matrix.shape[1])) + matches, unmatched_a, unmatched_b = [], [], [] + cost, x, y = lap.lapjv(cost_matrix, extend_cost=True, cost_limit=thresh) + for ix, mx in enumerate(x): + if mx >= 0: + matches.append([ix, mx]) + unmatched_a = np.where(x < 0)[0] + unmatched_b = np.where(y < 0)[0] + matches = np.asarray(matches) + return matches, unmatched_a, unmatched_b + +def fuse_score(cost_matrix, det_scores): + if cost_matrix.size == 0: + return cost_matrix + iou_sim = - cost_matrix + det_scores = np.expand_dims(det_scores, axis=1).repeat(cost_matrix.shape[1], axis=1) + fuse_sim = iou_sim * det_scores + fuse_cost = - fuse_sim + return fuse_cost \ No newline at end of file diff --git a/trackers/hybrid_sort_tracker/hybrid_sort.py b/trackers/hybrid_sort_tracker/hybrid_sort.py new file mode 100644 index 0000000000000000000000000000000000000000..f2a6dc9d4b2285e40a8197e667d87b5629c1efd8 --- /dev/null +++ b/trackers/hybrid_sort_tracker/hybrid_sort.py @@ -0,0 +1,561 @@ +""" + This script is adopted from the SORT script by Alex Bewley alex@bewley.ai +""" +from __future__ import print_function + +import numpy as np +from .association import * + + +def k_previous_obs(observations, cur_age, k): + if len(observations) == 0: + return [-1, -1, -1, -1, -1] + for i in range(k): + dt = k - i + if cur_age - dt in observations: + return observations[cur_age-dt] + max_age = max(observations.keys()) + return observations[max_age] + + +def convert_bbox_to_z(bbox): + """ + Takes a bounding box in the form [x1,y1,x2,y2] and returns z in the form + [x,y,s,r] where x,y is the centre of the box and s is the scale/area and r is + the aspect ratio + """ + w = bbox[2] - bbox[0] + h = bbox[3] - bbox[1] + x = bbox[0] + w/2. + y = bbox[1] + h/2. + s = w * h # scale is just area + r = w / float(h+1e-6) + score = bbox[4] + if score: + return np.array([x, y, s, score, r]).reshape((5, 1)) + else: + return np.array([x, y, s, r]).reshape((4, 1)) + + +def convert_x_to_bbox(x, score=None): + """ + Takes a bounding box in the centre form [x,y,s,r] and returns it in the form + [x1,y1,x2,y2] where x1,y1 is the top left and x2,y2 is the bottom right + """ + w = np.sqrt(x[2] * x[4]) + h = x[2] / w + score = x[3] + if(score == None): + return np.array([x[0]-w/2., x[1]-h/2., x[0]+w/2., x[1]+h/2.]).reshape((1, 4)) + else: + return np.array([x[0]-w/2., x[1]-h/2., x[0]+w/2., x[1]+h/2., score]).reshape((1, 5)) + + +def speed_direction(bbox1, bbox2): + cx1, cy1 = (bbox1[0]+bbox1[2]) / 2.0, (bbox1[1]+bbox1[3])/2.0 + cx2, cy2 = (bbox2[0]+bbox2[2]) / 2.0, (bbox2[1]+bbox2[3])/2.0 + speed = np.array([cy2-cy1, cx2-cx1]) + norm = np.sqrt((cy2-cy1)**2 + (cx2-cx1)**2) + 1e-6 + return speed / norm + +def speed_direction_lt(bbox1, bbox2): + cx1, cy1 = bbox1[0], bbox1[1] + cx2, cy2 = bbox2[0], bbox2[1] + speed = np.array([cy2-cy1, cx2-cx1]) + norm = np.sqrt((cy2-cy1)**2 + (cx2-cx1)**2) + 1e-6 + return speed / norm + +def speed_direction_rt(bbox1, bbox2): + cx1, cy1 = bbox1[0], bbox1[3] + cx2, cy2 = bbox2[0], bbox2[3] + speed = np.array([cy2-cy1, cx2-cx1]) + norm = np.sqrt((cy2-cy1)**2 + (cx2-cx1)**2) + 1e-6 + return speed / norm + +def speed_direction_lb(bbox1, bbox2): + cx1, cy1 = bbox1[2], bbox1[1] + cx2, cy2 = bbox2[2], bbox2[1] + speed = np.array([cy2-cy1, cx2-cx1]) + norm = np.sqrt((cy2-cy1)**2 + (cx2-cx1)**2) + 1e-6 + return speed / norm + +def speed_direction_rb(bbox1, bbox2): + cx1, cy1 = bbox1[2], bbox1[3] + cx2, cy2 = bbox2[2], bbox2[3] + speed = np.array([cy2-cy1, cx2-cx1]) + norm = np.sqrt((cy2-cy1)**2 + (cx2-cx1)**2) + 1e-6 + return speed / norm + +class KalmanBoxTracker(object): + """ + This class represents the internal state of individual tracked objects observed as bbox. + """ + count = 0 + + def __init__(self, bbox, delta_t=3, orig=False, args=None): + """ + Initialises a tracker using initial bounding box. + + """ + # define constant velocity model + # if not orig and not args.kalman_GPR: + if not orig: + # from .kalmanfilter import KalmanFilterNew as KalmanFilter + from .kalmanfilter_score_new import KalmanFilterNew_score_new as KalmanFilter_score_new + self.kf = KalmanFilter_score_new(dim_x=9, dim_z=5) + # self.kf_score = KalmanFilter_score(dim_x=2, dim_z=1) + else: + from filterpy.kalman import KalmanFilter + self.kf = KalmanFilter(dim_x=7, dim_z=4) + # u, v, s, c, r, ~u, ~v, ~s, ~c + self.kf.F = np.array([[1, 0, 0, 0, 0, 1, 0, 0, 0], + [0, 1, 0, 0, 0, 0, 1, 0, 0], + [0, 0, 1, 0, 0, 0, 0, 1, 0], + [0, 0, 0, 1, 0, 0, 0, 0, 1], + [0, 0, 0, 0, 1, 0, 0, 0, 0], + [0, 0, 0, 0, 0, 1, 0, 0, 0], + [0, 0, 0, 0, 0, 0, 1, 0, 0], + [0, 0, 0, 0, 0, 0, 0, 1, 0], + [0, 0, 0, 0, 0, 0, 0, 0, 1]]) + self.kf.H = np.array([[1, 0, 0, 0, 0, 0, 0, 0, 0], + [0, 1, 0, 0, 0, 0, 0, 0, 0], + [0, 0, 1, 0, 0, 0, 0, 0, 0], + [0, 0, 0, 1, 0, 0, 0, 0, 0], + [0, 0, 0, 0, 1, 0, 0, 0, 0]]) + # self.kf_score.F = np.array([[1, 1], + # [0, 1]]) + # self.kf_score.H = np.array([[1, 0]]) + + self.kf.R[2:, 2:] *= 10. + self.kf.P[5:, 5:] *= 1000. # give high uncertainty to the unobservable initial velocities + self.kf.P *= 10. + self.kf.Q[-1, -1] *= 0.01 + self.kf.Q[-2, -2] *= 0.01 + self.kf.Q[5:, 5:] *= 0.01 + + self.kf.x[:5] = convert_bbox_to_z(bbox) + + + # self.kf_score.R[0:, 0:] *= 10. + # self.kf_score.P[1:, 1:] *= 1000. # give high uncertainty to the unobservable initial velocities + # self.kf_score.P *= 10. + # self.kf_score.Q[-1, -1] *= 0.01 + # self.kf_score.Q[1:, 1:] *= 0.01 + # self.kf_score.x[:1] = bbox[-1] + + + self.time_since_update = 0 + self.id = KalmanBoxTracker.count + KalmanBoxTracker.count += 1 + self.history = [] + self.hits = 0 + self.hit_streak = 0 + self.age = 0 + self.age_recover_for_cbiou = 0 + """ + NOTE: [-1,-1,-1,-1,-1] is a compromising placeholder for non-observation status, the same for the return of + function k_previous_obs. It is ugly and I do not like it. But to support generate observation array in a + fast and unified way, which you would see below k_observations = np.array([k_previous_obs(...]]), let's bear it for now. + """ + self.last_observation = np.array([-1, -1, -1, -1, -1]) # placeholder + self.last_observation_save = np.array([-1, -1, -1, -1, -1]) + self.observations = dict() + self.history_observations = [] + # self.velocity = None + self.velocity_lt = None + self.velocity_rt = None + self.velocity_lb = None + self.velocity_rb = None + self.delta_t = delta_t + self.confidence_pre = None + self.confidence = bbox[-1] + self.args = args + self.kf.args = args + # self.kf_score.args = args + + def update(self, bbox): + """ + Updates the state vector with observed bbox. + """ + # velocity = None + velocity_lt = None + velocity_rt = None + velocity_lb = None + velocity_rb = None + if bbox is not None: + if self.last_observation.sum() >= 0: # no previous observation + previous_box = None + for i in range(self.delta_t): + # dt = self.delta_t - i + if self.age - i - 1 in self.observations: + previous_box = self.observations[self.age - i - 1] + if velocity_lt is not None: + # velocity += speed_direction(previous_box, bbox) + velocity_lt += speed_direction_lt(previous_box, bbox) + velocity_rt += speed_direction_rt(previous_box, bbox) + velocity_lb += speed_direction_lb(previous_box, bbox) + velocity_rb += speed_direction_rb(previous_box, bbox) + else: + # velocity = speed_direction(previous_box, bbox) + velocity_lt = speed_direction_lt(previous_box, bbox) + velocity_rt = speed_direction_rt(previous_box, bbox) + velocity_lb = speed_direction_lb(previous_box, bbox) + velocity_rb = speed_direction_rb(previous_box, bbox) + # break + if previous_box is None: + previous_box = self.last_observation + # self.velocity = speed_direction(previous_box, bbox) + # self.velocity = norm_vel(self.velocity) + self.velocity_lt = speed_direction_lt(previous_box, bbox) + self.velocity_rt = speed_direction_rt(previous_box, bbox) + self.velocity_lb = speed_direction_lb(previous_box, bbox) + self.velocity_rb = speed_direction_rb(previous_box, bbox) + else: + # self.velocity = velocity + # self.velocity = norm_vel(self.velocity) + self.velocity_lt = velocity_lt + self.velocity_rt = velocity_rt + self.velocity_lb = velocity_lb + self.velocity_rb = velocity_rb + """ + Insert new observations. This is a ugly way to maintain both self.observations + and self.history_observations. Bear it for the moment. + """ + self.last_observation = bbox + self.last_observation_save = bbox + self.observations[self.age] = bbox + self.history_observations.append(bbox) + + self.time_since_update = 0 + self.history = [] + self.hits += 1 + self.hit_streak += 1 + self.kf.update(convert_bbox_to_z(bbox)) + # self.kf_score.update(bbox[-1]) + self.confidence_pre = self.confidence + self.confidence = bbox[-1] + self.age_recover_for_cbiou = self.age + else: + self.kf.update(bbox) + # self.kf_score.update(bbox) + self.confidence_pre = None + + def predict(self): + """ + Advances the state vector and returns the predicted bounding box estimate. + """ + if((self.kf.x[7]+self.kf.x[2]) <= 0): + self.kf.x[7] *= 0.0 + + self.kf.predict() + # self.kf_score.predict() + self.age += 1 + if(self.time_since_update > 0): + self.hit_streak = 0 + self.time_since_update += 1 + self.history.append(convert_x_to_bbox(self.kf.x)) + if not self.confidence_pre: + return self.history[-1], np.clip(self.kf.x[3], self.args.track_thresh, 1.0), np.clip(self.confidence, 0.1, self.args.track_thresh) + else: + return self.history[-1], np.clip(self.kf.x[3], self.args.track_thresh, 1.0), np.clip(self.confidence - (self.confidence_pre - self.confidence), 0.1, self.args.track_thresh) + + def get_state(self): + """ + Returns the current bounding box estimate. + """ + return convert_x_to_bbox(self.kf.x) + + +""" + We support multiple ways for association cost calculation, by default + we use IoU. GIoU may have better performance in some situations. We note + that we hardly normalize the cost by all methods to (0,1) which may not be + the best practice. +""" +ASSO_FUNCS = { "iou": iou_batch, + "giou": giou_batch, + "ciou": ciou_batch, + "diou": diou_batch, + "ct_dist": ct_dist, + "Height_Modulated_IoU": hmiou + } + + +class Hybrid_Sort(object): + def __init__(self, args, det_thresh, max_age=30, min_hits=3, + iou_threshold=0.3, delta_t=3, asso_func="iou", inertia=0.2, use_byte=False): + """ + Sets key parameters for SORT + """ + self.max_age = max_age + self.min_hits = min_hits + self.iou_threshold = iou_threshold + self.trackers = [] + self.frame_count = 0 + self.det_thresh = det_thresh + self.delta_t = delta_t + self.asso_func = ASSO_FUNCS[asso_func] + self.inertia = inertia + self.use_byte = use_byte + self.args = args + KalmanBoxTracker.count = 0 + + def update(self, output_results, img_info, img_size): + """ + Params: + dets - a numpy array of detections in the format [[x1,y1,x2,y2,score],[x1,y1,x2,y2,score],...] + Requires: this method must be called once for each frame even with empty detections (use np.empty((0, 5)) for frames without detections). + Returns the a similar array, where the last column is the object ID. + NOTE: The number of objects returned may differ from the number of detections provided. + """ + if output_results is None: + return np.empty((0, 5)) + + self.frame_count += 1 + # post_process detections + if output_results.shape[1] == 5: + scores = output_results[:, 4] + bboxes = output_results[:, :4] + else: + output_results = output_results.cpu().numpy() + scores = output_results[:, 4] * output_results[:, 5] + bboxes = output_results[:, :4] # x1y1x2y2 + img_h, img_w = img_info[0], img_info[1] + scale = min(img_size[0] / float(img_h), img_size[1] / float(img_w)) + bboxes /= scale + dets = np.concatenate((bboxes, np.expand_dims(scores, axis=-1)), axis=1) + inds_low = scores > 0.1 + inds_high = scores < self.det_thresh + inds_second = np.logical_and(inds_low, inds_high) # self.det_thresh > score > 0.1, for second matching + dets_second = dets[inds_second] # detections for second matching + remain_inds = scores > self.det_thresh + dets = dets[remain_inds] + + # get predicted locations from existing trackers. + trks = np.zeros((len(self.trackers), 6)) + to_del = [] + ret = [] + for t, trk in enumerate(trks): + pos, kalman_score, simple_score = self.trackers[t].predict() + try: + trk[:] = [pos[0][0], pos[0][1], pos[0][2], pos[0][3], kalman_score, simple_score[0]] + except: + trk[:] = [pos[0][0], pos[0][1], pos[0][2], pos[0][3], kalman_score, simple_score] + if np.any(np.isnan(pos)): + to_del.append(t) + trks = np.ma.compress_rows(np.ma.masked_invalid(trks)) + for t in reversed(to_del): + self.trackers.pop(t) + + # velocities = np.array( + # [trk.velocity if trk.velocity is not None else np.array((0, 0)) for trk in self.trackers]) + velocities_lt = np.array( + [trk.velocity_lt if trk.velocity_lt is not None else np.array((0, 0)) for trk in self.trackers]) + velocities_rt = np.array( + [trk.velocity_rt if trk.velocity_rt is not None else np.array((0, 0)) for trk in self.trackers]) + velocities_lb = np.array( + [trk.velocity_lb if trk.velocity_lb is not None else np.array((0, 0)) for trk in self.trackers]) + velocities_rb = np.array( + [trk.velocity_rb if trk.velocity_rb is not None else np.array((0, 0)) for trk in self.trackers]) + last_boxes = np.array([trk.last_observation for trk in self.trackers]) + k_observations = np.array( + [k_previous_obs(trk.observations, trk.age, self.delta_t) for trk in self.trackers]) + + """ + First round of association + """ + if self.args.TCM_first_step: + matched, unmatched_dets, unmatched_trks = associate_4_points_with_score( + dets, trks, self.iou_threshold, velocities_lt, velocities_rt, velocities_lb, velocities_rb, + k_observations, self.inertia, self.asso_func, self.args) + else: + matched, unmatched_dets, unmatched_trks = associate_4_points( + dets, trks, self.iou_threshold, velocities_lt, velocities_rt, velocities_lb, velocities_rb, k_observations, self.inertia, self.asso_func, self.args) + + for m in matched: + self.trackers[m[1]].update(dets[m[0], :]) + + """ + Second round of associaton by OCR + """ + # BYTE association + if self.use_byte and len(dets_second) > 0 and unmatched_trks.shape[0] > 0: + u_trks = trks[unmatched_trks] + iou_left = self.asso_func(dets_second, u_trks) + iou_left = np.array(iou_left) + if iou_left.max() > self.iou_threshold: + """ + NOTE: by using a lower threshold, e.g., self.iou_threshold - 0.1, you may + get a higher performance especially on MOT17/MOT20 datasets. But we keep it + uniform here for simplicity + """ + if self.args.TCM_byte_step: + iou_left -= np.array(cal_score_dif_batch_two_score(dets_second, u_trks) * self.args.TCM_byte_step_weight) + matched_indices = linear_assignment(-iou_left) + to_remove_trk_indices = [] + for m in matched_indices: + det_ind, trk_ind = m[0], unmatched_trks[m[1]] + if iou_left[m[0], m[1]] < self.iou_threshold: + continue + self.trackers[trk_ind].update(dets_second[det_ind, :]) + to_remove_trk_indices.append(trk_ind) + unmatched_trks = np.setdiff1d(unmatched_trks, np.array(to_remove_trk_indices)) + + if unmatched_dets.shape[0] > 0 and unmatched_trks.shape[0] > 0: + left_dets = dets[unmatched_dets] + left_trks = last_boxes[unmatched_trks] + iou_left = self.asso_func(left_dets, left_trks) + iou_left = np.array(iou_left) + + if iou_left.max() > self.iou_threshold: + """ + NOTE: by using a lower threshold, e.g., self.iou_threshold - 0.1, you may + get a higher performance especially on MOT17/MOT20 datasets. But we keep it + uniform here for simplicity + """ + rematched_indices = linear_assignment(-iou_left) + to_remove_det_indices = [] + to_remove_trk_indices = [] + for m in rematched_indices: + det_ind, trk_ind = unmatched_dets[m[0]], unmatched_trks[m[1]] + if iou_left[m[0], m[1]] < self.iou_threshold: + continue + self.trackers[trk_ind].update(dets[det_ind, :]) + to_remove_det_indices.append(det_ind) + to_remove_trk_indices.append(trk_ind) + unmatched_dets = np.setdiff1d(unmatched_dets, np.array(to_remove_det_indices)) + unmatched_trks = np.setdiff1d(unmatched_trks, np.array(to_remove_trk_indices)) + + for m in unmatched_trks: + self.trackers[m].update(None) + + # create and initialise new trackers for unmatched detections + for i in unmatched_dets: + trk = KalmanBoxTracker(dets[i, :], delta_t=self.delta_t, args=self.args) + self.trackers.append(trk) + i = len(self.trackers) + for trk in reversed(self.trackers): + if trk.last_observation.sum() < 0: + d = trk.get_state()[0][:4] + else: + """ + this is optional to use the recent observation or the kalman filter prediction, + we didn't notice significant difference here + """ + d = trk.last_observation[:4] + if (trk.time_since_update < 1) and (trk.hit_streak >= self.min_hits or self.frame_count <= self.min_hits): + # +1 as MOT benchmark requires positive + ret.append(np.concatenate((d, [trk.id+1])).reshape(1, -1)) + i -= 1 + # remove dead tracklet + if(trk.time_since_update > self.max_age): + self.trackers.pop(i) + if(len(ret) > 0): + return np.concatenate(ret) + return np.empty((0, 5)) + + def update_public(self, dets, cates, scores): + self.frame_count += 1 + + det_scores = np.ones((dets.shape[0], 1)) + dets = np.concatenate((dets, det_scores), axis=1) + + remain_inds = scores > self.det_thresh + + cates = cates[remain_inds] + dets = dets[remain_inds] + + trks = np.zeros((len(self.trackers), 5)) + to_del = [] + ret = [] + for t, trk in enumerate(trks): + pos = self.trackers[t].predict()[0] + cat = self.trackers[t].cate + trk[:] = [pos[0], pos[1], pos[2], pos[3], cat] + if np.any(np.isnan(pos)): + to_del.append(t) + trks = np.ma.compress_rows(np.ma.masked_invalid(trks)) + for t in reversed(to_del): + self.trackers.pop(t) + + velocities = np.array([trk.velocity if trk.velocity is not None else np.array((0,0)) for trk in self.trackers]) + last_boxes = np.array([trk.last_observation for trk in self.trackers]) + k_observations = np.array([k_previous_obs(trk.observations, trk.age, self.delta_t) for trk in self.trackers]) + + matched, unmatched_dets, unmatched_trks = associate_kitti\ + (dets, trks, cates, self.iou_threshold, velocities, k_observations, self.inertia) + + for m in matched: + self.trackers[m[1]].update(dets[m[0], :]) + + if unmatched_dets.shape[0] > 0 and unmatched_trks.shape[0] > 0: + """ + The re-association stage by OCR. + NOTE: at this stage, adding other strategy might be able to continue improve + the performance, such as BYTE association by ByteTrack. + """ + left_dets = dets[unmatched_dets] + left_trks = last_boxes[unmatched_trks] + left_dets_c = left_dets.copy() + left_trks_c = left_trks.copy() + + iou_left = self.asso_func(left_dets_c, left_trks_c) + iou_left = np.array(iou_left) + det_cates_left = cates[unmatched_dets] + trk_cates_left = trks[unmatched_trks][:,4] + num_dets = unmatched_dets.shape[0] + num_trks = unmatched_trks.shape[0] + cate_matrix = np.zeros((num_dets, num_trks)) + for i in range(num_dets): + for j in range(num_trks): + if det_cates_left[i] != trk_cates_left[j]: + """ + For some datasets, such as KITTI, there are different categories, + we have to avoid associate them together. + """ + cate_matrix[i][j] = -1e6 + iou_left = iou_left + cate_matrix + if iou_left.max() > self.iou_threshold - 0.1: + rematched_indices = linear_assignment(-iou_left) + to_remove_det_indices = [] + to_remove_trk_indices = [] + for m in rematched_indices: + det_ind, trk_ind = unmatched_dets[m[0]], unmatched_trks[m[1]] + if iou_left[m[0], m[1]] < self.iou_threshold - 0.1: + continue + self.trackers[trk_ind].update(dets[det_ind, :]) + to_remove_det_indices.append(det_ind) + to_remove_trk_indices.append(trk_ind) + unmatched_dets = np.setdiff1d(unmatched_dets, np.array(to_remove_det_indices)) + unmatched_trks = np.setdiff1d(unmatched_trks, np.array(to_remove_trk_indices)) + + for i in unmatched_dets: + trk = KalmanBoxTracker(dets[i,:]) + trk.cate = cates[i] + self.trackers.append(trk) + i = len(self.trackers) + + for trk in reversed(self.trackers): + if trk.last_observation.sum() > 0: + d = trk.last_observation[:4] + else: + d = trk.get_state()[0] + if (trk.time_since_update < 1): + if (self.frame_count <= self.min_hits) or (trk.hit_streak >= self.min_hits): + # id+1 as MOT benchmark requires positive + ret.append(np.concatenate((d, [trk.id+1], [trk.cate], [0])).reshape(1,-1)) + if trk.hit_streak == self.min_hits: + # Head Padding (HP): recover the lost steps during initializing the track + for prev_i in range(self.min_hits - 1): + prev_observation = trk.history_observations[-(prev_i+2)] + ret.append((np.concatenate((prev_observation[:4], [trk.id+1], [trk.cate], + [-(prev_i+1)]))).reshape(1,-1)) + i -= 1 + if (trk.time_since_update > self.max_age): + self.trackers.pop(i) + + if(len(ret)>0): + return np.concatenate(ret) + return np.empty((0, 7)) + + diff --git a/trackers/hybrid_sort_tracker/hybrid_sort_reid.py b/trackers/hybrid_sort_tracker/hybrid_sort_reid.py new file mode 100644 index 0000000000000000000000000000000000000000..854ce40f0bc727666be75f779a1be323553b74d8 --- /dev/null +++ b/trackers/hybrid_sort_tracker/hybrid_sort_reid.py @@ -0,0 +1,630 @@ +""" + This script is adopted from the SORT script by Alex Bewley alex@bewley.ai +""" +from __future__ import print_function + +import numpy as np +import copy +from .association import * +from collections import deque # [hgx0418] deque for reid feature +np.random.seed(0) + +def k_previous_obs(observations, cur_age, k): + if len(observations) == 0: + return [-1, -1, -1, -1, -1] + for i in range(k): + dt = k - i + if cur_age - dt in observations: + return observations[cur_age-dt] + max_age = max(observations.keys()) + return observations[max_age] + + +def convert_bbox_to_z(bbox): + """ + Takes a bounding box in the form [x1,y1,x2,y2] and returns z in the form + [x,y,s,r] where x,y is the centre of the box and s is the scale/area and r is + the aspect ratio + """ + w = bbox[2] - bbox[0] + h = bbox[3] - bbox[1] + x = bbox[0] + w/2. + y = bbox[1] + h/2. + s = w * h # scale is just area + r = w / float(h+1e-6) + score = bbox[4] + if score: + return np.array([x, y, s, score, r]).reshape((5, 1)) + else: + return np.array([x, y, s, r]).reshape((4, 1)) + + +def convert_x_to_bbox(x, score=None): + """ + Takes a bounding box in the centre form [x,y,s,r] and returns it in the form + [x1,y1,x2,y2] where x1,y1 is the top left and x2,y2 is the bottom right + """ + w = np.sqrt(x[2] * x[4]) + h = x[2] / w + score = x[3] + if(score == None): + return np.array([x[0]-w/2., x[1]-h/2., x[0]+w/2., x[1]+h/2.]).reshape((1, 4)) + else: + return np.array([x[0]-w/2., x[1]-h/2., x[0]+w/2., x[1]+h/2., score]).reshape((1, 5)) + + +def speed_direction(bbox1, bbox2): + cx1, cy1 = (bbox1[0]+bbox1[2]) / 2.0, (bbox1[1]+bbox1[3])/2.0 + cx2, cy2 = (bbox2[0]+bbox2[2]) / 2.0, (bbox2[1]+bbox2[3])/2.0 + speed = np.array([cy2-cy1, cx2-cx1]) + norm = np.sqrt((cy2-cy1)**2 + (cx2-cx1)**2) + 1e-6 + return speed / norm + +def speed_direction_lt(bbox1, bbox2): + cx1, cy1 = bbox1[0], bbox1[1] + cx2, cy2 = bbox2[0], bbox2[1] + speed = np.array([cy2-cy1, cx2-cx1]) + norm = np.sqrt((cy2-cy1)**2 + (cx2-cx1)**2) + 1e-6 + return speed / norm + +def speed_direction_rt(bbox1, bbox2): + cx1, cy1 = bbox1[0], bbox1[3] + cx2, cy2 = bbox2[0], bbox2[3] + speed = np.array([cy2-cy1, cx2-cx1]) + norm = np.sqrt((cy2-cy1)**2 + (cx2-cx1)**2) + 1e-6 + return speed / norm + +def speed_direction_lb(bbox1, bbox2): + cx1, cy1 = bbox1[2], bbox1[1] + cx2, cy2 = bbox2[2], bbox2[1] + speed = np.array([cy2-cy1, cx2-cx1]) + norm = np.sqrt((cy2-cy1)**2 + (cx2-cx1)**2) + 1e-6 + return speed / norm + +def speed_direction_rb(bbox1, bbox2): + cx1, cy1 = bbox1[2], bbox1[3] + cx2, cy2 = bbox2[2], bbox2[3] + speed = np.array([cy2-cy1, cx2-cx1]) + norm = np.sqrt((cy2-cy1)**2 + (cx2-cx1)**2) + 1e-6 + return speed / norm + +class KalmanBoxTracker(object): + """ + This class represents the internal state of individual tracked objects observed as bbox. + """ + count = 0 + + def __init__(self, bbox, temp_feat, delta_t=3, orig=False, buffer_size=30, args=None): # 'temp_feat' and 'buffer_size' for reid feature + """ + Initialises a tracker using initial bounding box. + + """ + # define constant velocity model + # if not orig and not args.kalman_GPR: + if not orig: + from .kalmanfilter_score_new import KalmanFilterNew_score_new as KalmanFilter_score_new + self.kf = KalmanFilter_score_new(dim_x=9, dim_z=5) + else: + from filterpy.kalman import KalmanFilter + self.kf = KalmanFilter(dim_x=7, dim_z=4) + # u, v, s, c, r, ~u, ~v, ~s, ~c + self.kf.F = np.array([[1, 0, 0, 0, 0, 1, 0, 0, 0], + [0, 1, 0, 0, 0, 0, 1, 0, 0], + [0, 0, 1, 0, 0, 0, 0, 1, 0], + [0, 0, 0, 1, 0, 0, 0, 0, 1], + [0, 0, 0, 0, 1, 0, 0, 0, 0], + [0, 0, 0, 0, 0, 1, 0, 0, 0], + [0, 0, 0, 0, 0, 0, 1, 0, 0], + [0, 0, 0, 0, 0, 0, 0, 1, 0], + [0, 0, 0, 0, 0, 0, 0, 0, 1]]) + self.kf.H = np.array([[1, 0, 0, 0, 0, 0, 0, 0, 0], + [0, 1, 0, 0, 0, 0, 0, 0, 0], + [0, 0, 1, 0, 0, 0, 0, 0, 0], + [0, 0, 0, 1, 0, 0, 0, 0, 0], + [0, 0, 0, 0, 1, 0, 0, 0, 0]]) + + self.kf.R[2:, 2:] *= 10. + self.kf.P[5:, 5:] *= 1000. # give high uncertainty to the unobservable initial velocities + self.kf.P *= 10. + self.kf.Q[-1, -1] *= 0.01 + self.kf.Q[-2, -2] *= 0.01 + self.kf.Q[5:, 5:] *= 0.01 + + self.kf.x[:5] = convert_bbox_to_z(bbox) + + self.time_since_update = 0 + self.id = KalmanBoxTracker.count + KalmanBoxTracker.count += 1 + self.history = [] + self.hits = 0 + self.hit_streak = 0 + self.age = 0 + """ + NOTE: [-1,-1,-1,-1,-1] is a compromising placeholder for non-observation status, the same for the return of + function k_previous_obs. It is ugly and I do not like it. But to support generate observation array in a + fast and unified way, which you would see below k_observations = np.array([k_previous_obs(...]]), let's bear it for now. + """ + self.last_observation = np.array([-1, -1, -1, -1, -1]) # placeholder + self.last_observation_save = np.array([-1, -1, -1, -1, -1]) + self.observations = dict() + self.history_observations = [] + self.velocity_lt = None + self.velocity_rt = None + self.velocity_lb = None + self.velocity_rb = None + self.delta_t = delta_t + self.confidence_pre = None + self.confidence = bbox[-1] + self.args = args + self.kf.args = args + + # add the following values and functions + self.smooth_feat = None + buffer_size = args.longterm_bank_length + self.features = deque([], maxlen=buffer_size) + self.update_features(temp_feat) + + # momentum of embedding update + self.alpha = self.args.alpha + + # ReID. for update embeddings during tracking + def update_features(self, feat, score=-1): + feat /= np.linalg.norm(feat) + self.curr_feat = feat + if self.smooth_feat is None: + self.smooth_feat = feat + else: + if self.args.adapfs: + assert score > 0 + pre_w = self.alpha * (self.confidence / (self.confidence + score)) + cur_w = (1 - self.alpha) * (score / (self.confidence + score)) + sum_w = pre_w + cur_w + pre_w = pre_w / sum_w + cur_w = cur_w / sum_w + self.smooth_feat = pre_w * self.smooth_feat + cur_w * feat + else: + self.smooth_feat = self.alpha * self.smooth_feat + (1 - self.alpha) * feat + self.features.append(feat) + self.smooth_feat /= np.linalg.norm(self.smooth_feat) + + def camera_update(self, warp_matrix): + """ + update 'self.mean' of current tracklet with ecc results. + Parameters + ---------- + warp_matrix: warp matrix computed by ECC. + """ + x1, y1, x2, y2, s = convert_x_to_bbox(self.kf.x)[0] + x1_, y1_, _ = warp_matrix @ np.array([x1, y1, 1]).T + x2_, y2_, _ = warp_matrix @ np.array([x2, y2, 1]).T + # w, h = x2_ - x1_, y2_ - y1_ + # cx, cy = x1_ + w / 2, y1_ + h / 2 + self.kf.x[:5] = convert_bbox_to_z([x1_, y1_, x2_, y2_, s]) + + def update(self, bbox, id_feature, update_feature=True): + """ + Updates the state vector with observed bbox. + """ + velocity_lt = None + velocity_rt = None + velocity_lb = None + velocity_rb = None + if bbox is not None: + if self.last_observation.sum() >= 0: # no previous observation + previous_box = None + for i in range(self.delta_t): + # dt = self.delta_t - i + if self.age - i - 1 in self.observations: + previous_box = self.observations[self.age - i - 1] + if velocity_lt is not None: + velocity_lt += speed_direction_lt(previous_box, bbox) + velocity_rt += speed_direction_rt(previous_box, bbox) + velocity_lb += speed_direction_lb(previous_box, bbox) + velocity_rb += speed_direction_rb(previous_box, bbox) + else: + velocity_lt = speed_direction_lt(previous_box, bbox) + velocity_rt = speed_direction_rt(previous_box, bbox) + velocity_lb = speed_direction_lb(previous_box, bbox) + velocity_rb = speed_direction_rb(previous_box, bbox) + # break + if previous_box is None: + previous_box = self.last_observation + self.velocity_lt = speed_direction_lt(previous_box, bbox) + self.velocity_rt = speed_direction_rt(previous_box, bbox) + self.velocity_lb = speed_direction_lb(previous_box, bbox) + self.velocity_rb = speed_direction_rb(previous_box, bbox) + else: + self.velocity_lt = velocity_lt + self.velocity_rt = velocity_rt + self.velocity_lb = velocity_lb + self.velocity_rb = velocity_rb + """ + Insert new observations. This is a ugly way to maintain both self.observations + and self.history_observations. Bear it for the moment. + """ + self.last_observation = bbox + self.last_observation_save = bbox + self.observations[self.age] = bbox + self.history_observations.append(bbox) + + self.time_since_update = 0 + self.history = [] + self.hits += 1 + self.hit_streak += 1 + self.kf.update(convert_bbox_to_z(bbox)) + # add interface for update feature or not + if update_feature: + if self.args.adapfs: + self.update_features(id_feature, score=bbox[-1]) + else: + self.update_features(id_feature) + self.confidence_pre = self.confidence + self.confidence = bbox[-1] + else: + self.kf.update(bbox) + self.confidence_pre = None + + def predict(self): + """ + Advances the state vector and returns the predicted bounding box estimate. + """ + if((self.kf.x[7]+self.kf.x[2]) <= 0): + self.kf.x[7] *= 0.0 + + self.kf.predict() + self.age += 1 + if(self.time_since_update > 0): + self.hit_streak = 0 + self.time_since_update += 1 + self.history.append(convert_x_to_bbox(self.kf.x)) + if not self.confidence_pre: + return self.history[-1], np.clip(self.kf.x[3], self.args.track_thresh, 1.0), np.clip(self.confidence, 0.1, self.args.track_thresh) + else: + return self.history[-1], np.clip(self.kf.x[3], self.args.track_thresh, 1.0), np.clip(self.confidence - (self.confidence_pre - self.confidence), 0.1, self.args.track_thresh) + + def get_state(self): + """ + Returns the current bounding box estimate. + """ + return convert_x_to_bbox(self.kf.x) + + +""" + We support multiple ways for association cost calculation, by default + we use IoU. GIoU may have better performance in some situations. We note + that we hardly normalize the cost by all methods to (0,1) which may not be + the best practice. +""" +ASSO_FUNCS = { "iou": iou_batch, + "giou": giou_batch, + "ciou": ciou_batch, + "diou": diou_batch, + "ct_dist": ct_dist, + "Height_Modulated_IoU": hmiou + } + + +class Hybrid_Sort_ReID(object): + def __init__(self, args, det_thresh, max_age=30, min_hits=3, + iou_threshold=0.3, delta_t=3, asso_func="iou", inertia=0.2): + """ + Sets key parameters for SORT + """ + self.max_age = max_age + self.min_hits = min_hits + self.iou_threshold = iou_threshold + self.trackers = [] + self.frame_count = 0 + self.det_thresh = det_thresh + self.delta_t = delta_t + self.asso_func = ASSO_FUNCS[asso_func] + self.inertia = inertia + self.use_byte = args.use_byte + self.args = args + KalmanBoxTracker.count = 0 + + # ECC for CMC + def camera_update(self, trackers, warp_matrix): + for tracker in trackers: + tracker.camera_update(warp_matrix) + + def update(self, output_results, img_info, img_size, id_feature=None, warp_matrix=None): + """ + Params: + dets - a numpy array of detections in the format [[x1,y1,x2,y2,score],[x1,y1,x2,y2,score],...] + Requires: this method must be called once for each frame even with empty detections (use np.empty((0, 5)) for frames without detections). + Returns the a similar array, where the last column is the object ID. + NOTE: The number of objects returned may differ from the number of detections provided. + """ + if output_results is None: + return np.empty((0, 5)) + + if self.args.ECC: + # camera update for all stracks + if warp_matrix is not None: + self.camera_update(self.trackers, warp_matrix) + + self.frame_count += 1 + # post_process detections + if output_results.shape[1] == 5: + scores = output_results[:, 4] + bboxes = output_results[:, :4] + else: + output_results = output_results.cpu().numpy() + scores = output_results[:, 4] * output_results[:, 5] + bboxes = output_results[:, :4] # x1y1x2y2 + img_h, img_w = img_info[0], img_info[1] + scale = min(img_size[0] / float(img_h), img_size[1] / float(img_w)) + bboxes /= scale + dets = np.concatenate((bboxes, np.expand_dims(scores, axis=-1)), axis=1) + inds_low = scores > self.args.low_thresh + inds_high = scores < self.det_thresh + inds_second = np.logical_and(inds_low, inds_high) # self.det_thresh > score > 0.1, for second matching + dets_second = dets[inds_second] # detections for second matching + remain_inds = scores > self.det_thresh + dets = dets[remain_inds] + id_feature_keep = id_feature[remain_inds] # ID feature of 1st stage matching + id_feature_second = id_feature[inds_second] # ID feature of 2nd stage matching + + trks = np.zeros((len(self.trackers), 6)) + to_del = [] + ret = [] + for t, trk in enumerate(trks): + pos, kalman_score, simple_score = self.trackers[t].predict() + try: + trk[:] = [pos[0][0], pos[0][1], pos[0][2], pos[0][3], kalman_score, simple_score[0]] + except: + trk[:] = [pos[0][0], pos[0][1], pos[0][2], pos[0][3], kalman_score, simple_score] + if np.any(np.isnan(pos)): + to_del.append(t) + trks = np.ma.compress_rows(np.ma.masked_invalid(trks)) + for t in reversed(to_del): + self.trackers.pop(t) + + velocities_lt = np.array( + [trk.velocity_lt if trk.velocity_lt is not None else np.array((0, 0)) for trk in self.trackers]) + velocities_rt = np.array( + [trk.velocity_rt if trk.velocity_rt is not None else np.array((0, 0)) for trk in self.trackers]) + velocities_lb = np.array( + [trk.velocity_lb if trk.velocity_lb is not None else np.array((0, 0)) for trk in self.trackers]) + velocities_rb = np.array( + [trk.velocity_rb if trk.velocity_rb is not None else np.array((0, 0)) for trk in self.trackers]) + last_boxes = np.array([trk.last_observation for trk in self.trackers]) + k_observations = np.array( + [k_previous_obs(trk.observations, trk.age, self.delta_t) for trk in self.trackers]) + + """ + First round of association + """ + if self.args.EG_weight_high_score > 0 and self.args.TCM_first_step: + track_features = np.asarray([track.smooth_feat for track in self.trackers], + dtype=np.float) + emb_dists = embedding_distance(track_features, id_feature_keep).T + if self.args.with_longterm_reid or self.args.with_longterm_reid_correction: + long_track_features = np.asarray([np.vstack(list(track.features)).mean(0) for track in self.trackers], + dtype=np.float) + assert track_features.shape == long_track_features.shape + long_emb_dists = embedding_distance(long_track_features, id_feature_keep).T + assert emb_dists.shape == long_emb_dists.shape + matched, unmatched_dets, unmatched_trks = associate_4_points_with_score_with_reid( + dets, trks, self.iou_threshold, velocities_lt, velocities_rt, velocities_lb, velocities_rb, + k_observations, self.inertia, self.asso_func, self.args,emb_cost=emb_dists, + weights=(1.0, self.args.EG_weight_high_score), thresh=self.args.high_score_matching_thresh, + long_emb_dists=long_emb_dists, with_longterm_reid=self.args.with_longterm_reid, + longterm_reid_weight=self.args.longterm_reid_weight, + with_longterm_reid_correction=self.args.with_longterm_reid_correction, + longterm_reid_correction_thresh=self.args.longterm_reid_correction_thresh, + dataset=self.args.dataset) + else: + matched, unmatched_dets, unmatched_trks = associate_4_points_with_score_with_reid( + dets, trks, self.iou_threshold, velocities_lt, velocities_rt, velocities_lb, velocities_rb, + k_observations, self.inertia, self.asso_func, self.args,emb_cost=emb_dists, + weights=(1.0, self.args.EG_weight_high_score), thresh=self.args.high_score_matching_thresh) + elif self.args.TCM_first_step: + matched, unmatched_dets, unmatched_trks = associate_4_points_with_score( + dets, trks, self.iou_threshold, velocities_lt, velocities_rt, velocities_lb, velocities_rb, + k_observations, self.inertia, self.asso_func, self.args) + + # update with id feature + for m in matched: + self.trackers[m[1]].update(dets[m[0], :], id_feature_keep[m[0], :]) + + """ + Second round of associaton by OCR + """ + # BYTE association + if self.use_byte and len(dets_second) > 0 and unmatched_trks.shape[0] > 0: + u_trks = trks[unmatched_trks] + u_tracklets = [self.trackers[index] for index in unmatched_trks] + iou_left = self.asso_func(dets_second, u_trks) + iou_left = np.array(iou_left) + if iou_left.max() > self.iou_threshold: + """ + NOTE: by using a lower threshold, e.g., self.iou_threshold - 0.1, you may + get a higher performance especially on MOT17/MOT20 datasets. But we keep it + uniform here for simplicity + """ + if self.args.TCM_byte_step: + iou_left_ori = copy.deepcopy(iou_left) + iou_left -= np.array(cal_score_dif_batch_two_score(dets_second, u_trks) * self.args.TCM_byte_step_weight) + iou_left_thre = iou_left + if self.args.EG_weight_low_score > 0: + u_track_features = np.asarray([track.smooth_feat for track in u_tracklets], dtype=np.float) + emb_dists_low_score = embedding_distance(u_track_features, id_feature_second).T + matched_indices = linear_assignment(-iou_left + self.args.EG_weight_low_score * emb_dists_low_score, + ) + else: + matched_indices = linear_assignment(-iou_left) + to_remove_trk_indices = [] + for m in matched_indices: + det_ind, trk_ind = m[0], unmatched_trks[m[1]] + if self.args.with_longterm_reid_correction and self.args.EG_weight_low_score > 0: + if iou_left_thre[m[0], m[1]] < self.iou_threshold or emb_dists_low_score[m[0], m[1]] > self.args.longterm_reid_correction_thresh_low: + print("correction 2nd:", emb_dists_low_score[m[0], m[1]]) + continue + else: + if iou_left_thre[m[0], m[1]] < self.iou_threshold: + continue + self.trackers[trk_ind].update(dets_second[det_ind, :], id_feature_second[det_ind, :], update_feature=False) # [hgx0523] do not update with id feature + to_remove_trk_indices.append(trk_ind) + unmatched_trks = np.setdiff1d(unmatched_trks, np.array(to_remove_trk_indices)) + + if unmatched_dets.shape[0] > 0 and unmatched_trks.shape[0] > 0: + left_dets = dets[unmatched_dets] + # left_id_feature = id_feature_keep[unmatched_dets] # update id feature, if needed + left_trks = last_boxes[unmatched_trks] + iou_left = self.asso_func(left_dets, left_trks) + iou_left = np.array(iou_left) + + if iou_left.max() > self.iou_threshold: + """ + NOTE: by using a lower threshold, e.g., self.iou_threshold - 0.1, you may + get a higher performance especially on MOT17/MOT20 datasets. But we keep it + uniform here for simplicity + """ + rematched_indices = linear_assignment(-iou_left) + to_remove_det_indices = [] + to_remove_trk_indices = [] + for m in rematched_indices: + det_ind, trk_ind = unmatched_dets[m[0]], unmatched_trks[m[1]] + if iou_left[m[0], m[1]] < self.iou_threshold: + continue + self.trackers[trk_ind].update(dets[det_ind, :], id_feature_keep[det_ind, :], update_feature=False) + to_remove_det_indices.append(det_ind) + to_remove_trk_indices.append(trk_ind) + unmatched_dets = np.setdiff1d(unmatched_dets, np.array(to_remove_det_indices)) + unmatched_trks = np.setdiff1d(unmatched_trks, np.array(to_remove_trk_indices)) + + for m in unmatched_trks: + self.trackers[m].update(None, None) + + # create and initialise new trackers for unmatched detections + for i in unmatched_dets: + trk = KalmanBoxTracker(dets[i, :], id_feature_keep[i, :], delta_t=self.delta_t, args=self.args) + self.trackers.append(trk) + i = len(self.trackers) + for trk in reversed(self.trackers): + if trk.last_observation.sum() < 0: + d = trk.get_state()[0][:4] + else: + """ + this is optional to use the recent observation or the kalman filter prediction, + we didn't notice significant difference here + """ + d = trk.last_observation[:4] + if (trk.time_since_update < 1) and (trk.hit_streak >= self.min_hits or self.frame_count <= self.min_hits): + # +1 as MOT benchmark requires positive + ret.append(np.concatenate((d, [trk.id+1])).reshape(1, -1)) + i -= 1 + # remove dead tracklet + if(trk.time_since_update > self.max_age): + self.trackers.pop(i) + if(len(ret) > 0): + return np.concatenate(ret) + return np.empty((0, 5)) + + def update_public(self, dets, cates, scores): + self.frame_count += 1 + + det_scores = np.ones((dets.shape[0], 1)) + dets = np.concatenate((dets, det_scores), axis=1) + + remain_inds = scores > self.det_thresh + + cates = cates[remain_inds] + dets = dets[remain_inds] + + trks = np.zeros((len(self.trackers), 5)) + to_del = [] + ret = [] + for t, trk in enumerate(trks): + pos = self.trackers[t].predict()[0] + cat = self.trackers[t].cate + trk[:] = [pos[0], pos[1], pos[2], pos[3], cat] + if np.any(np.isnan(pos)): + to_del.append(t) + trks = np.ma.compress_rows(np.ma.masked_invalid(trks)) + for t in reversed(to_del): + self.trackers.pop(t) + + velocities = np.array([trk.velocity if trk.velocity is not None else np.array((0,0)) for trk in self.trackers]) + last_boxes = np.array([trk.last_observation for trk in self.trackers]) + k_observations = np.array([k_previous_obs(trk.observations, trk.age, self.delta_t) for trk in self.trackers]) + + matched, unmatched_dets, unmatched_trks = associate_kitti\ + (dets, trks, cates, self.iou_threshold, velocities, k_observations, self.inertia) + + for m in matched: + self.trackers[m[1]].update(dets[m[0], :]) + + if unmatched_dets.shape[0] > 0 and unmatched_trks.shape[0] > 0: + """ + The re-association stage by OCR. + NOTE: at this stage, adding other strategy might be able to continue improve + the performance, such as BYTE association by ByteTrack. + """ + left_dets = dets[unmatched_dets] + left_trks = last_boxes[unmatched_trks] + left_dets_c = left_dets.copy() + left_trks_c = left_trks.copy() + + iou_left = self.asso_func(left_dets_c, left_trks_c) + iou_left = np.array(iou_left) + det_cates_left = cates[unmatched_dets] + trk_cates_left = trks[unmatched_trks][:,4] + num_dets = unmatched_dets.shape[0] + num_trks = unmatched_trks.shape[0] + cate_matrix = np.zeros((num_dets, num_trks)) + for i in range(num_dets): + for j in range(num_trks): + if det_cates_left[i] != trk_cates_left[j]: + """ + For some datasets, such as KITTI, there are different categories, + we have to avoid associate them together. + """ + cate_matrix[i][j] = -1e6 + iou_left = iou_left + cate_matrix + if iou_left.max() > self.iou_threshold - 0.1: + rematched_indices = linear_assignment(-iou_left) + to_remove_det_indices = [] + to_remove_trk_indices = [] + for m in rematched_indices: + det_ind, trk_ind = unmatched_dets[m[0]], unmatched_trks[m[1]] + if iou_left[m[0], m[1]] < self.iou_threshold - 0.1: + continue + self.trackers[trk_ind].update(dets[det_ind, :]) + to_remove_det_indices.append(det_ind) + to_remove_trk_indices.append(trk_ind) + unmatched_dets = np.setdiff1d(unmatched_dets, np.array(to_remove_det_indices)) + unmatched_trks = np.setdiff1d(unmatched_trks, np.array(to_remove_trk_indices)) + + for i in unmatched_dets: + trk = KalmanBoxTracker(dets[i,:]) + trk.cate = cates[i] + self.trackers.append(trk) + i = len(self.trackers) + + for trk in reversed(self.trackers): + if trk.last_observation.sum() > 0: + d = trk.last_observation[:4] + else: + d = trk.get_state()[0] + if (trk.time_since_update < 1): + if (self.frame_count <= self.min_hits) or (trk.hit_streak >= self.min_hits): + # id+1 as MOT benchmark requires positive + ret.append(np.concatenate((d, [trk.id+1], [trk.cate], [0])).reshape(1,-1)) + if trk.hit_streak == self.min_hits: + # Head Padding (HP): recover the lost steps during initializing the track + for prev_i in range(self.min_hits - 1): + prev_observation = trk.history_observations[-(prev_i+2)] + ret.append((np.concatenate((prev_observation[:4], [trk.id+1], [trk.cate], + [-(prev_i+1)]))).reshape(1,-1)) + i -= 1 + if (trk.time_since_update > self.max_age): + self.trackers.pop(i) + + if(len(ret)>0): + return np.concatenate(ret) + return np.empty((0, 7)) + + diff --git a/trackers/hybrid_sort_tracker/kalmanfilter.py b/trackers/hybrid_sort_tracker/kalmanfilter.py new file mode 100644 index 0000000000000000000000000000000000000000..3f7ae12c08ad38bf3c0ec4f6bd1bcce177b99b53 --- /dev/null +++ b/trackers/hybrid_sort_tracker/kalmanfilter.py @@ -0,0 +1,1591 @@ +# -*- coding: utf-8 -*- +# pylint: disable=invalid-name, too-many-arguments, too-many-branches, +# pylint: disable=too-many-locals, too-many-instance-attributes, too-many-lines + +""" +This module implements the linear Kalman filter in both an object +oriented and procedural form. The KalmanFilter class implements +the filter by storing the various matrices in instance variables, +minimizing the amount of bookkeeping you have to do. +All Kalman filters operate with a predict->update cycle. The +predict step, implemented with the method or function predict(), +uses the state transition matrix F to predict the state in the next +time period (epoch). The state is stored as a gaussian (x, P), where +x is the state (column) vector, and P is its covariance. Covariance +matrix Q specifies the process covariance. In Bayesian terms, this +prediction is called the *prior*, which you can think of colloquially +as the estimate prior to incorporating the measurement. +The update step, implemented with the method or function `update()`, +incorporates the measurement z with covariance R, into the state +estimate (x, P). The class stores the system uncertainty in S, +the innovation (residual between prediction and measurement in +measurement space) in y, and the Kalman gain in k. The procedural +form returns these variables to you. In Bayesian terms this computes +the *posterior* - the estimate after the information from the +measurement is incorporated. +Whether you use the OO form or procedural form is up to you. If +matrices such as H, R, and F are changing each epoch, you'll probably +opt to use the procedural form. If they are unchanging, the OO +form is perhaps easier to use since you won't need to keep track +of these matrices. This is especially useful if you are implementing +banks of filters or comparing various KF designs for performance; +a trivial coding bug could lead to using the wrong sets of matrices. +This module also offers an implementation of the RTS smoother, and +other helper functions, such as log likelihood computations. +The Saver class allows you to easily save the state of the +KalmanFilter class after every update +This module expects NumPy arrays for all values that expect +arrays, although in a few cases, particularly method parameters, +it will accept types that convert to NumPy arrays, such as lists +of lists. These exceptions are documented in the method or function. +Examples +-------- +The following example constructs a constant velocity kinematic +filter, filters noisy data, and plots the results. It also demonstrates +using the Saver class to save the state of the filter at each epoch. +.. code-block:: Python + import matplotlib.pyplot as plt + import numpy as np + from filterpy.kalman import KalmanFilter + from filterpy.common import Q_discrete_white_noise, Saver + r_std, q_std = 2., 0.003 + cv = KalmanFilter(dim_x=2, dim_z=1) + cv.x = np.array([[0., 1.]]) # position, velocity + cv.F = np.array([[1, dt],[ [0, 1]]) + cv.R = np.array([[r_std^^2]]) + f.H = np.array([[1., 0.]]) + f.P = np.diag([.1^^2, .03^^2) + f.Q = Q_discrete_white_noise(2, dt, q_std**2) + saver = Saver(cv) + for z in range(100): + cv.predict() + cv.update([z + randn() * r_std]) + saver.save() # save the filter's state + saver.to_array() + plt.plot(saver.x[:, 0]) + # plot all of the priors + plt.plot(saver.x_prior[:, 0]) + # plot mahalanobis distance + plt.figure() + plt.plot(saver.mahalanobis) +This code implements the same filter using the procedural form + x = np.array([[0., 1.]]) # position, velocity + F = np.array([[1, dt],[ [0, 1]]) + R = np.array([[r_std^^2]]) + H = np.array([[1., 0.]]) + P = np.diag([.1^^2, .03^^2) + Q = Q_discrete_white_noise(2, dt, q_std**2) + for z in range(100): + x, P = predict(x, P, F=F, Q=Q) + x, P = update(x, P, z=[z + randn() * r_std], R=R, H=H) + xs.append(x[0, 0]) + plt.plot(xs) +For more examples see the test subdirectory, or refer to the +book cited below. In it I both teach Kalman filtering from basic +principles, and teach the use of this library in great detail. +FilterPy library. +http://github.com/rlabbe/filterpy +Documentation at: +https://filterpy.readthedocs.org +Supporting book at: +https://github.com/rlabbe/Kalman-and-Bayesian-Filters-in-Python +This is licensed under an MIT license. See the readme.MD file +for more information. +Copyright 2014-2018 Roger R Labbe Jr. +""" + +from __future__ import absolute_import, division + +from copy import deepcopy +from math import log, exp, sqrt +import sys +import numpy as np +from numpy import dot, zeros, eye, isscalar, shape +import numpy.linalg as linalg +from filterpy.stats import logpdf +from filterpy.common import pretty_str, reshape_z + + +class KalmanFilterNew(object): + """ Implements a Kalman filter. You are responsible for setting the + various state variables to reasonable values; the defaults will + not give you a functional filter. + For now the best documentation is my free book Kalman and Bayesian + Filters in Python [2]_. The test files in this directory also give you a + basic idea of use, albeit without much description. + In brief, you will first construct this object, specifying the size of + the state vector with dim_x and the size of the measurement vector that + you will be using with dim_z. These are mostly used to perform size checks + when you assign values to the various matrices. For example, if you + specified dim_z=2 and then try to assign a 3x3 matrix to R (the + measurement noise matrix you will get an assert exception because R + should be 2x2. (If for whatever reason you need to alter the size of + things midstream just use the underscore version of the matrices to + assign directly: your_filter._R = a_3x3_matrix.) + After construction the filter will have default matrices created for you, + but you must specify the values for each. It’s usually easiest to just + overwrite them rather than assign to each element yourself. This will be + clearer in the example below. All are of type numpy.array. + Examples + -------- + Here is a filter that tracks position and velocity using a sensor that only + reads position. + First construct the object with the required dimensionality. Here the state + (`dim_x`) has 2 coefficients (position and velocity), and the measurement + (`dim_z`) has one. In FilterPy `x` is the state, `z` is the measurement. + .. code:: + from filterpy.kalman import KalmanFilter + f = KalmanFilter (dim_x=2, dim_z=1) + Assign the initial value for the state (position and velocity). You can do this + with a two dimensional array like so: + .. code:: + f.x = np.array([[2.], # position + [0.]]) # velocity + or just use a one dimensional array, which I prefer doing. + .. code:: + f.x = np.array([2., 0.]) + Define the state transition matrix: + .. code:: + f.F = np.array([[1.,1.], + [0.,1.]]) + Define the measurement function. Here we need to convert a position-velocity + vector into just a position vector, so we use: + .. code:: + f.H = np.array([[1., 0.]]) + Define the state's covariance matrix P. + .. code:: + f.P = np.array([[1000., 0.], + [ 0., 1000.] ]) + Now assign the measurement noise. Here the dimension is 1x1, so I can + use a scalar + .. code:: + f.R = 5 + I could have done this instead: + .. code:: + f.R = np.array([[5.]]) + Note that this must be a 2 dimensional array. + Finally, I will assign the process noise. Here I will take advantage of + another FilterPy library function: + .. code:: + from filterpy.common import Q_discrete_white_noise + f.Q = Q_discrete_white_noise(dim=2, dt=0.1, var=0.13) + Now just perform the standard predict/update loop: + .. code:: + while some_condition_is_true: + z = get_sensor_reading() + f.predict() + f.update(z) + do_something_with_estimate (f.x) + **Procedural Form** + This module also contains stand alone functions to perform Kalman filtering. + Use these if you are not a fan of objects. + **Example** + .. code:: + while True: + z, R = read_sensor() + x, P = predict(x, P, F, Q) + x, P = update(x, P, z, R, H) + See my book Kalman and Bayesian Filters in Python [2]_. + You will have to set the following attributes after constructing this + object for the filter to perform properly. Please note that there are + various checks in place to ensure that you have made everything the + 'correct' size. However, it is possible to provide incorrectly sized + arrays such that the linear algebra can not perform an operation. + It can also fail silently - you can end up with matrices of a size that + allows the linear algebra to work, but are the wrong shape for the problem + you are trying to solve. + Parameters + ---------- + dim_x : int + Number of state variables for the Kalman filter. For example, if + you are tracking the position and velocity of an object in two + dimensions, dim_x would be 4. + This is used to set the default size of P, Q, and u + dim_z : int + Number of of measurement inputs. For example, if the sensor + provides you with position in (x,y), dim_z would be 2. + dim_u : int (optional) + size of the control input, if it is being used. + Default value of 0 indicates it is not used. + compute_log_likelihood : bool (default = True) + Computes log likelihood by default, but this can be a slow + computation, so if you never use it you can turn this computation + off. + Attributes + ---------- + x : numpy.array(dim_x, 1) + Current state estimate. Any call to update() or predict() updates + this variable. + P : numpy.array(dim_x, dim_x) + Current state covariance matrix. Any call to update() or predict() + updates this variable. + x_prior : numpy.array(dim_x, 1) + Prior (predicted) state estimate. The *_prior and *_post attributes + are for convenience; they store the prior and posterior of the + current epoch. Read Only. + P_prior : numpy.array(dim_x, dim_x) + Prior (predicted) state covariance matrix. Read Only. + x_post : numpy.array(dim_x, 1) + Posterior (updated) state estimate. Read Only. + P_post : numpy.array(dim_x, dim_x) + Posterior (updated) state covariance matrix. Read Only. + z : numpy.array + Last measurement used in update(). Read only. + R : numpy.array(dim_z, dim_z) + Measurement noise covariance matrix. Also known as the + observation covariance. + Q : numpy.array(dim_x, dim_x) + Process noise covariance matrix. Also known as the transition + covariance. + F : numpy.array() + State Transition matrix. Also known as `A` in some formulation. + H : numpy.array(dim_z, dim_x) + Measurement function. Also known as the observation matrix, or as `C`. + y : numpy.array + Residual of the update step. Read only. + K : numpy.array(dim_x, dim_z) + Kalman gain of the update step. Read only. + S : numpy.array + System uncertainty (P projected to measurement space). Read only. + SI : numpy.array + Inverse system uncertainty. Read only. + log_likelihood : float + log-likelihood of the last measurement. Read only. + likelihood : float + likelihood of last measurement. Read only. + Computed from the log-likelihood. The log-likelihood can be very + small, meaning a large negative value such as -28000. Taking the + exp() of that results in 0.0, which can break typical algorithms + which multiply by this value, so by default we always return a + number >= sys.float_info.min. + mahalanobis : float + mahalanobis distance of the innovation. Read only. + inv : function, default numpy.linalg.inv + If you prefer another inverse function, such as the Moore-Penrose + pseudo inverse, set it to that instead: kf.inv = np.linalg.pinv + This is only used to invert self.S. If you know it is diagonal, you + might choose to set it to filterpy.common.inv_diagonal, which is + several times faster than numpy.linalg.inv for diagonal matrices. + alpha : float + Fading memory setting. 1.0 gives the normal Kalman filter, and + values slightly larger than 1.0 (such as 1.02) give a fading + memory effect - previous measurements have less influence on the + filter's estimates. This formulation of the Fading memory filter + (there are many) is due to Dan Simon [1]_. + References + ---------- + .. [1] Dan Simon. "Optimal State Estimation." John Wiley & Sons. + p. 208-212. (2006) + .. [2] Roger Labbe. "Kalman and Bayesian Filters in Python" + https://github.com/rlabbe/Kalman-and-Bayesian-Filters-in-Python + """ + + def __init__(self, dim_x, dim_z, dim_u=0, args=None): + if dim_x < 1: + raise ValueError('dim_x must be 1 or greater') + if dim_z < 1: + raise ValueError('dim_z must be 1 or greater') + if dim_u < 0: + raise ValueError('dim_u must be 0 or greater') + + self.dim_x = dim_x + self.dim_z = dim_z + self.dim_u = dim_u + + self.x = zeros((dim_x, 1)) # state + self.P = eye(dim_x) # uncertainty covariance + self.Q = eye(dim_x) # process uncertainty + self.B = None # control transition matrix + self.F = eye(dim_x) # state transition matrix + self.H = zeros((dim_z, dim_x)) # measurement function + self.R = eye(dim_z) # measurement uncertainty + self._alpha_sq = 1. # fading memory control + self.M = np.zeros((dim_x, dim_z)) # process-measurement cross correlation + self.z = np.array([[None]*self.dim_z]).T + + # gain and residual are computed during the innovation step. We + # save them so that in case you want to inspect them for various + # purposes + self.K = np.zeros((dim_x, dim_z)) # kalman gain + self.y = zeros((dim_z, 1)) + self.S = np.zeros((dim_z, dim_z)) # system uncertainty + self.SI = np.zeros((dim_z, dim_z)) # inverse system uncertainty + + # identity matrix. Do not alter this. + self._I = np.eye(dim_x) + + # these will always be a copy of x,P after predict() is called + self.x_prior = self.x.copy() + self.P_prior = self.P.copy() + + # these will always be a copy of x,P after update() is called + self.x_post = self.x.copy() + self.P_post = self.P.copy() + + # Only computed only if requested via property + self._log_likelihood = log(sys.float_info.min) + self._likelihood = sys.float_info.min + self._mahalanobis = None + + # keep all observations + self.history_obs = [] + + self.inv = np.linalg.inv + + self.attr_saved = None + self.observed = False + self.args = args + + + def predict(self, u=None, B=None, F=None, Q=None): + """ + Predict next state (prior) using the Kalman filter state propagation + equations. + Parameters + ---------- + u : np.array, default 0 + Optional control vector. + B : np.array(dim_x, dim_u), or None + Optional control transition matrix; a value of None + will cause the filter to use `self.B`. + F : np.array(dim_x, dim_x), or None + Optional state transition matrix; a value of None + will cause the filter to use `self.F`. + Q : np.array(dim_x, dim_x), scalar, or None + Optional process noise matrix; a value of None will cause the + filter to use `self.Q`. + """ + + if B is None: + B = self.B + if F is None: + F = self.F + if Q is None: + Q = self.Q + elif isscalar(Q): + Q = eye(self.dim_x) * Q + + + # x = Fx + Bu + if B is not None and u is not None: + self.x = dot(F, self.x) + dot(B, u) + else: + self.x = dot(F, self.x) + + # P = FPF' + Q + self.P = self._alpha_sq * dot(dot(F, self.P), F.T) + Q + + # save prior + self.x_prior = self.x.copy() + self.P_prior = self.P.copy() + + + + def freeze(self): + """ + Save the parameters before non-observation forward + """ + self.attr_saved = deepcopy(self.__dict__) + + + def unfreeze(self): + if self.attr_saved is not None: + new_history = deepcopy(self.history_obs) + self.__dict__ = self.attr_saved + # self.history_obs = new_history + self.history_obs = self.history_obs[:-1] + occur = [int(d is None) for d in new_history] + indices = np.where(np.array(occur)==0)[0] + index1 = indices[-2] + index2 = indices[-1] + box1 = new_history[index1] + x1, y1, s1, r1 = box1 + w1 = np.sqrt(s1 * r1) + h1 = np.sqrt(s1 / r1) + box2 = new_history[index2] + x2, y2, s2, r2 = box2 + w2 = np.sqrt(s2 * r2) + h2 = np.sqrt(s2 / r2) + time_gap = index2 - index1 + dx = (x2-x1)/time_gap + dy = (y2-y1)/time_gap + dw = (w2-w1)/time_gap + dh = (h2-h1)/time_gap + for i in range(index2 - index1): + """ + The default virtual trajectory generation is by linear + motion (constant speed hypothesis), you could modify this + part to implement your own. + """ + x = x1 + (i+1) * dx + y = y1 + (i+1) * dy + w = w1 + (i+1) * dw + h = h1 + (i+1) * dh + s = w * h + r = w / float(h) + new_box = np.array([x, y, s, r]).reshape((4, 1)) + """ + I still use predict-update loop here to refresh the parameters, + but this can be faster by directly modifying the internal parameters + as suggested in the paper. I keep this naive but slow way for + easy read and understanding + """ + + if not i == (index2-index1-1): + self.update(new_box) + self.predict() + else: + self.update(new_box) + + + def update(self, z, R=None, H=None): + """ + Add a new measurement (z) to the Kalman filter. + If z is None, nothing is computed. However, x_post and P_post are + updated with the prior (x_prior, P_prior), and self.z is set to None. + Parameters + ---------- + z : (dim_z, 1): array_like + measurement for this update. z can be a scalar if dim_z is 1, + otherwise it must be convertible to a column vector. + If you pass in a value of H, z must be a column vector the + of the correct size. + R : np.array, scalar, or None + Optionally provide R to override the measurement noise for this + one call, otherwise self.R will be used. + H : np.array, or None + Optionally provide H to override the measurement function for this + one call, otherwise self.H will be used. + """ + + # set to None to force recompute + self._log_likelihood = None + self._likelihood = None + self._mahalanobis = None + + # append the observation + self.history_obs.append(z) + + if z is None: + if self.observed: + """ + Got no observation so freeze the current parameters for future + potential online smoothing. + """ + self.freeze() + self.observed = False + self.z = np.array([[None]*self.dim_z]).T + self.x_post = self.x.copy() + self.P_post = self.P.copy() + self.y = zeros((self.dim_z, 1)) + return + + # self.observed = True + if not self.observed: + """ + Get observation, use online smoothing to re-update parameters + """ + self.unfreeze() + self.observed = True + + if R is None: + R = self.R + elif isscalar(R): + R = eye(self.dim_z) * R + + # if self.args.use_nsa_kalman: + # if confidence > 0.6: + # R = [(1 - confidence) * self.args.nsa_kalman_interval * x for x in R] + # else: + # R = [self.args.nsa_kalman_interval_sec * x for x in R] + + if H is None: + z = reshape_z(z, self.dim_z, self.x.ndim) + H = self.H + + # y = z - Hx + # error (residual) between measurement and prediction + self.y = z - dot(H, self.x) + + # common subexpression for speed + PHT = dot(self.P, H.T) + + # S = HPH' + R + # project system uncertainty into measurement space + self.S = dot(H, PHT) + R + self.SI = self.inv(self.S) + # K = PH'inv(S) + # map system uncertainty into kalman gain + self.K = dot(PHT, self.SI) + + # x = x + Ky + # predict new x with residual scaled by the kalman gain + self.x = self.x + dot(self.K, self.y) + + # P = (I-KH)P(I-KH)' + KRK' + # This is more numerically stable + # and works for non-optimal K vs the equation + # P = (I-KH)P usually seen in the literature. + + I_KH = self._I - dot(self.K, H) + self.P = dot(dot(I_KH, self.P), I_KH.T) + dot(dot(self.K, R), self.K.T) + + # save measurement and posterior state + self.z = deepcopy(z) + self.x_post = self.x.copy() + self.P_post = self.P.copy() + + def predict_steadystate(self, u=0, B=None): + """ + Predict state (prior) using the Kalman filter state propagation + equations. Only x is updated, P is left unchanged. See + update_steadstate() for a longer explanation of when to use this + method. + Parameters + ---------- + u : np.array + Optional control vector. If non-zero, it is multiplied by B + to create the control input into the system. + B : np.array(dim_x, dim_u), or None + Optional control transition matrix; a value of None + will cause the filter to use `self.B`. + """ + + if B is None: + B = self.B + + # x = Fx + Bu + if B is not None: + self.x = dot(self.F, self.x) + dot(B, u) + else: + self.x = dot(self.F, self.x) + + # save prior + self.x_prior = self.x.copy() + self.P_prior = self.P.copy() + + def update_steadystate(self, z): + """ + Add a new measurement (z) to the Kalman filter without recomputing + the Kalman gain K, the state covariance P, or the system + uncertainty S. + You can use this for LTI systems since the Kalman gain and covariance + converge to a fixed value. Precompute these and assign them explicitly, + or run the Kalman filter using the normal predict()/update(0 cycle + until they converge. + The main advantage of this call is speed. We do significantly less + computation, notably avoiding a costly matrix inversion. + Use in conjunction with predict_steadystate(), otherwise P will grow + without bound. + Parameters + ---------- + z : (dim_z, 1): array_like + measurement for this update. z can be a scalar if dim_z is 1, + otherwise it must be convertible to a column vector. + Examples + -------- + >>> cv = kinematic_kf(dim=3, order=2) # 3D const velocity filter + >>> # let filter converge on representative data, then save k and P + >>> for i in range(100): + >>> cv.predict() + >>> cv.update([i, i, i]) + >>> saved_k = np.copy(cv.K) + >>> saved_P = np.copy(cv.P) + later on: + >>> cv = kinematic_kf(dim=3, order=2) # 3D const velocity filter + >>> cv.K = np.copy(saved_K) + >>> cv.P = np.copy(saved_P) + >>> for i in range(100): + >>> cv.predict_steadystate() + >>> cv.update_steadystate([i, i, i]) + """ + + # set to None to force recompute + self._log_likelihood = None + self._likelihood = None + self._mahalanobis = None + + if z is None: + self.z = np.array([[None]*self.dim_z]).T + self.x_post = self.x.copy() + self.P_post = self.P.copy() + self.y = zeros((self.dim_z, 1)) + return + + z = reshape_z(z, self.dim_z, self.x.ndim) + + # y = z - Hx + # error (residual) between measurement and prediction + self.y = z - dot(self.H, self.x) + + # x = x + Ky + # predict new x with residual scaled by the kalman gain + self.x = self.x + dot(self.K, self.y) + + self.z = deepcopy(z) + self.x_post = self.x.copy() + self.P_post = self.P.copy() + + # set to None to force recompute + self._log_likelihood = None + self._likelihood = None + self._mahalanobis = None + + def update_correlated(self, z, R=None, H=None): + """ Add a new measurement (z) to the Kalman filter assuming that + process noise and measurement noise are correlated as defined in + the `self.M` matrix. + A partial derivation can be found in [1] + If z is None, nothing is changed. + Parameters + ---------- + z : (dim_z, 1): array_like + measurement for this update. z can be a scalar if dim_z is 1, + otherwise it must be convertible to a column vector. + R : np.array, scalar, or None + Optionally provide R to override the measurement noise for this + one call, otherwise self.R will be used. + H : np.array, or None + Optionally provide H to override the measurement function for this + one call, otherwise self.H will be used. + References + ---------- + .. [1] Bulut, Y. (2011). Applied Kalman filter theory (Doctoral dissertation, Northeastern University). + http://people.duke.edu/~hpgavin/SystemID/References/Balut-KalmanFilter-PhD-NEU-2011.pdf + """ + + # set to None to force recompute + self._log_likelihood = None + self._likelihood = None + self._mahalanobis = None + + if z is None: + self.z = np.array([[None]*self.dim_z]).T + self.x_post = self.x.copy() + self.P_post = self.P.copy() + self.y = zeros((self.dim_z, 1)) + return + + if R is None: + R = self.R + elif isscalar(R): + R = eye(self.dim_z) * R + + # rename for readability and a tiny extra bit of speed + if H is None: + z = reshape_z(z, self.dim_z, self.x.ndim) + H = self.H + + # handle special case: if z is in form [[z]] but x is not a column + # vector dimensions will not match + if self.x.ndim == 1 and shape(z) == (1, 1): + z = z[0] + + if shape(z) == (): # is it scalar, e.g. z=3 or z=np.array(3) + z = np.asarray([z]) + + # y = z - Hx + # error (residual) between measurement and prediction + self.y = z - dot(H, self.x) + + # common subexpression for speed + PHT = dot(self.P, H.T) + + # project system uncertainty into measurement space + self.S = dot(H, PHT) + dot(H, self.M) + dot(self.M.T, H.T) + R + self.SI = self.inv(self.S) + + # K = PH'inv(S) + # map system uncertainty into kalman gain + self.K = dot(PHT + self.M, self.SI) + + # x = x + Ky + # predict new x with residual scaled by the kalman gain + self.x = self.x + dot(self.K, self.y) + self.P = self.P - dot(self.K, dot(H, self.P) + self.M.T) + + self.z = deepcopy(z) + self.x_post = self.x.copy() + self.P_post = self.P.copy() + + def batch_filter(self, zs, Fs=None, Qs=None, Hs=None, + Rs=None, Bs=None, us=None, update_first=False, + saver=None): + """ Batch processes a sequences of measurements. + Parameters + ---------- + zs : list-like + list of measurements at each time step `self.dt`. Missing + measurements must be represented by `None`. + Fs : None, list-like, default=None + optional value or list of values to use for the state transition + matrix F. + If Fs is None then self.F is used for all epochs. + Otherwise it must contain a list-like list of F's, one for + each epoch. This allows you to have varying F per epoch. + Qs : None, np.array or list-like, default=None + optional value or list of values to use for the process error + covariance Q. + If Qs is None then self.Q is used for all epochs. + Otherwise it must contain a list-like list of Q's, one for + each epoch. This allows you to have varying Q per epoch. + Hs : None, np.array or list-like, default=None + optional list of values to use for the measurement matrix H. + If Hs is None then self.H is used for all epochs. + If Hs contains a single matrix, then it is used as H for all + epochs. + Otherwise it must contain a list-like list of H's, one for + each epoch. This allows you to have varying H per epoch. + Rs : None, np.array or list-like, default=None + optional list of values to use for the measurement error + covariance R. + If Rs is None then self.R is used for all epochs. + Otherwise it must contain a list-like list of R's, one for + each epoch. This allows you to have varying R per epoch. + Bs : None, np.array or list-like, default=None + optional list of values to use for the control transition matrix B. + If Bs is None then self.B is used for all epochs. + Otherwise it must contain a list-like list of B's, one for + each epoch. This allows you to have varying B per epoch. + us : None, np.array or list-like, default=None + optional list of values to use for the control input vector; + If us is None then None is used for all epochs (equivalent to 0, + or no control input). + Otherwise it must contain a list-like list of u's, one for + each epoch. + update_first : bool, optional, default=False + controls whether the order of operations is update followed by + predict, or predict followed by update. Default is predict->update. + saver : filterpy.common.Saver, optional + filterpy.common.Saver object. If provided, saver.save() will be + called after every epoch + Returns + ------- + means : np.array((n,dim_x,1)) + array of the state for each time step after the update. Each entry + is an np.array. In other words `means[k,:]` is the state at step + `k`. + covariance : np.array((n,dim_x,dim_x)) + array of the covariances for each time step after the update. + In other words `covariance[k,:,:]` is the covariance at step `k`. + means_predictions : np.array((n,dim_x,1)) + array of the state for each time step after the predictions. Each + entry is an np.array. In other words `means[k,:]` is the state at + step `k`. + covariance_predictions : np.array((n,dim_x,dim_x)) + array of the covariances for each time step after the prediction. + In other words `covariance[k,:,:]` is the covariance at step `k`. + Examples + -------- + .. code-block:: Python + # this example demonstrates tracking a measurement where the time + # between measurement varies, as stored in dts. This requires + # that F be recomputed for each epoch. The output is then smoothed + # with an RTS smoother. + zs = [t + random.randn()*4 for t in range (40)] + Fs = [np.array([[1., dt], [0, 1]] for dt in dts] + (mu, cov, _, _) = kf.batch_filter(zs, Fs=Fs) + (xs, Ps, Ks, Pps) = kf.rts_smoother(mu, cov, Fs=Fs) + """ + + #pylint: disable=too-many-statements + n = np.size(zs, 0) + if Fs is None: + Fs = [self.F] * n + if Qs is None: + Qs = [self.Q] * n + if Hs is None: + Hs = [self.H] * n + if Rs is None: + Rs = [self.R] * n + if Bs is None: + Bs = [self.B] * n + if us is None: + us = [0] * n + + # mean estimates from Kalman Filter + if self.x.ndim == 1: + means = zeros((n, self.dim_x)) + means_p = zeros((n, self.dim_x)) + else: + means = zeros((n, self.dim_x, 1)) + means_p = zeros((n, self.dim_x, 1)) + + # state covariances from Kalman Filter + covariances = zeros((n, self.dim_x, self.dim_x)) + covariances_p = zeros((n, self.dim_x, self.dim_x)) + + if update_first: + for i, (z, F, Q, H, R, B, u) in enumerate(zip(zs, Fs, Qs, Hs, Rs, Bs, us)): + + self.update(z, R=R, H=H) + means[i, :] = self.x + covariances[i, :, :] = self.P + + self.predict(u=u, B=B, F=F, Q=Q) + means_p[i, :] = self.x + covariances_p[i, :, :] = self.P + + if saver is not None: + saver.save() + else: + for i, (z, F, Q, H, R, B, u) in enumerate(zip(zs, Fs, Qs, Hs, Rs, Bs, us)): + + self.predict(u=u, B=B, F=F, Q=Q) + means_p[i, :] = self.x + covariances_p[i, :, :] = self.P + + self.update(z, R=R, H=H) + means[i, :] = self.x + covariances[i, :, :] = self.P + + if saver is not None: + saver.save() + + return (means, covariances, means_p, covariances_p) + + def rts_smoother(self, Xs, Ps, Fs=None, Qs=None, inv=np.linalg.inv): + """ + Runs the Rauch-Tung-Striebel Kalman smoother on a set of + means and covariances computed by a Kalman filter. The usual input + would come from the output of `KalmanFilter.batch_filter()`. + Parameters + ---------- + Xs : numpy.array + array of the means (state variable x) of the output of a Kalman + filter. + Ps : numpy.array + array of the covariances of the output of a kalman filter. + Fs : list-like collection of numpy.array, optional + State transition matrix of the Kalman filter at each time step. + Optional, if not provided the filter's self.F will be used + Qs : list-like collection of numpy.array, optional + Process noise of the Kalman filter at each time step. Optional, + if not provided the filter's self.Q will be used + inv : function, default numpy.linalg.inv + If you prefer another inverse function, such as the Moore-Penrose + pseudo inverse, set it to that instead: kf.inv = np.linalg.pinv + Returns + ------- + x : numpy.ndarray + smoothed means + P : numpy.ndarray + smoothed state covariances + K : numpy.ndarray + smoother gain at each step + Pp : numpy.ndarray + Predicted state covariances + Examples + -------- + .. code-block:: Python + zs = [t + random.randn()*4 for t in range (40)] + (mu, cov, _, _) = kalman.batch_filter(zs) + (x, P, K, Pp) = rts_smoother(mu, cov, kf.F, kf.Q) + """ + + if len(Xs) != len(Ps): + raise ValueError('length of Xs and Ps must be the same') + + n = Xs.shape[0] + dim_x = Xs.shape[1] + + if Fs is None: + Fs = [self.F] * n + if Qs is None: + Qs = [self.Q] * n + + # smoother gain + K = zeros((n, dim_x, dim_x)) + + x, P, Pp = Xs.copy(), Ps.copy(), Ps.copy() + for k in range(n-2, -1, -1): + Pp[k] = dot(dot(Fs[k+1], P[k]), Fs[k+1].T) + Qs[k+1] + + #pylint: disable=bad-whitespace + K[k] = dot(dot(P[k], Fs[k+1].T), inv(Pp[k])) + x[k] += dot(K[k], x[k+1] - dot(Fs[k+1], x[k])) + P[k] += dot(dot(K[k], P[k+1] - Pp[k]), K[k].T) + + return (x, P, K, Pp) + + def get_prediction(self, u=None, B=None, F=None, Q=None): + """ + Predict next state (prior) using the Kalman filter state propagation + equations and returns it without modifying the object. + Parameters + ---------- + u : np.array, default 0 + Optional control vector. + B : np.array(dim_x, dim_u), or None + Optional control transition matrix; a value of None + will cause the filter to use `self.B`. + F : np.array(dim_x, dim_x), or None + Optional state transition matrix; a value of None + will cause the filter to use `self.F`. + Q : np.array(dim_x, dim_x), scalar, or None + Optional process noise matrix; a value of None will cause the + filter to use `self.Q`. + Returns + ------- + (x, P) : tuple + State vector and covariance array of the prediction. + """ + + if B is None: + B = self.B + if F is None: + F = self.F + if Q is None: + Q = self.Q + elif isscalar(Q): + Q = eye(self.dim_x) * Q + + # x = Fx + Bu + if B is not None and u is not None: + x = dot(F, self.x) + dot(B, u) + else: + x = dot(F, self.x) + + # P = FPF' + Q + P = self._alpha_sq * dot(dot(F, self.P), F.T) + Q + + return x, P + + def get_update(self, z=None): + """ + Computes the new estimate based on measurement `z` and returns it + without altering the state of the filter. + Parameters + ---------- + z : (dim_z, 1): array_like + measurement for this update. z can be a scalar if dim_z is 1, + otherwise it must be convertible to a column vector. + Returns + ------- + (x, P) : tuple + State vector and covariance array of the update. + """ + + if z is None: + return self.x, self.P + z = reshape_z(z, self.dim_z, self.x.ndim) + + R = self.R + H = self.H + P = self.P + x = self.x + + # error (residual) between measurement and prediction + y = z - dot(H, x) + + # common subexpression for speed + PHT = dot(P, H.T) + + # project system uncertainty into measurement space + S = dot(H, PHT) + R + + # map system uncertainty into kalman gain + K = dot(PHT, self.inv(S)) + + # predict new x with residual scaled by the kalman gain + x = x + dot(K, y) + + # P = (I-KH)P(I-KH)' + KRK' + I_KH = self._I - dot(K, H) + P = dot(dot(I_KH, P), I_KH.T) + dot(dot(K, R), K.T) + + return x, P + + def residual_of(self, z): + """ + Returns the residual for the given measurement (z). Does not alter + the state of the filter. + """ + z = reshape_z(z, self.dim_z, self.x.ndim) + return z - dot(self.H, self.x_prior) + + def measurement_of_state(self, x): + """ + Helper function that converts a state into a measurement. + Parameters + ---------- + x : np.array + kalman state vector + Returns + ------- + z : (dim_z, 1): array_like + measurement for this update. z can be a scalar if dim_z is 1, + otherwise it must be convertible to a column vector. + """ + + return dot(self.H, x) + + @property + def log_likelihood(self): + """ + log-likelihood of the last measurement. + """ + if self._log_likelihood is None: + self._log_likelihood = logpdf(x=self.y, cov=self.S) + return self._log_likelihood + + @property + def likelihood(self): + """ + Computed from the log-likelihood. The log-likelihood can be very + small, meaning a large negative value such as -28000. Taking the + exp() of that results in 0.0, which can break typical algorithms + which multiply by this value, so by default we always return a + number >= sys.float_info.min. + """ + if self._likelihood is None: + self._likelihood = exp(self.log_likelihood) + if self._likelihood == 0: + self._likelihood = sys.float_info.min + return self._likelihood + + @property + def mahalanobis(self): + """" + Mahalanobis distance of measurement. E.g. 3 means measurement + was 3 standard deviations away from the predicted value. + Returns + ------- + mahalanobis : float + """ + if self._mahalanobis is None: + self._mahalanobis = sqrt(float(dot(dot(self.y.T, self.SI), self.y))) + return self._mahalanobis + + @property + def alpha(self): + """ + Fading memory setting. 1.0 gives the normal Kalman filter, and + values slightly larger than 1.0 (such as 1.02) give a fading + memory effect - previous measurements have less influence on the + filter's estimates. This formulation of the Fading memory filter + (there are many) is due to Dan Simon [1]_. + """ + return self._alpha_sq**.5 + + def log_likelihood_of(self, z): + """ + log likelihood of the measurement `z`. This should only be called + after a call to update(). Calling after predict() will yield an + incorrect result.""" + + if z is None: + return log(sys.float_info.min) + return logpdf(z, dot(self.H, self.x), self.S) + + @alpha.setter + def alpha(self, value): + if not np.isscalar(value) or value < 1: + raise ValueError('alpha must be a float greater than 1') + + self._alpha_sq = value**2 + + def __repr__(self): + return '\n'.join([ + 'KalmanFilter object', + pretty_str('dim_x', self.dim_x), + pretty_str('dim_z', self.dim_z), + pretty_str('dim_u', self.dim_u), + pretty_str('x', self.x), + pretty_str('P', self.P), + pretty_str('x_prior', self.x_prior), + pretty_str('P_prior', self.P_prior), + pretty_str('x_post', self.x_post), + pretty_str('P_post', self.P_post), + pretty_str('F', self.F), + pretty_str('Q', self.Q), + pretty_str('R', self.R), + pretty_str('H', self.H), + pretty_str('K', self.K), + pretty_str('y', self.y), + pretty_str('S', self.S), + pretty_str('SI', self.SI), + pretty_str('M', self.M), + pretty_str('B', self.B), + pretty_str('z', self.z), + pretty_str('log-likelihood', self.log_likelihood), + pretty_str('likelihood', self.likelihood), + pretty_str('mahalanobis', self.mahalanobis), + pretty_str('alpha', self.alpha), + pretty_str('inv', self.inv) + ]) + + def test_matrix_dimensions(self, z=None, H=None, R=None, F=None, Q=None): + """ + Performs a series of asserts to check that the size of everything + is what it should be. This can help you debug problems in your design. + If you pass in H, R, F, Q those will be used instead of this object's + value for those matrices. + Testing `z` (the measurement) is problamatic. x is a vector, and can be + implemented as either a 1D array or as a nx1 column vector. Thus Hx + can be of different shapes. Then, if Hx is a single value, it can + be either a 1D array or 2D vector. If either is true, z can reasonably + be a scalar (either '3' or np.array('3') are scalars under this + definition), a 1D, 1 element array, or a 2D, 1 element array. You are + allowed to pass in any combination that works. + """ + + if H is None: + H = self.H + if R is None: + R = self.R + if F is None: + F = self.F + if Q is None: + Q = self.Q + x = self.x + P = self.P + + assert x.ndim == 1 or x.ndim == 2, \ + "x must have one or two dimensions, but has {}".format(x.ndim) + + if x.ndim == 1: + assert x.shape[0] == self.dim_x, \ + "Shape of x must be ({},{}), but is {}".format( + self.dim_x, 1, x.shape) + else: + assert x.shape == (self.dim_x, 1), \ + "Shape of x must be ({},{}), but is {}".format( + self.dim_x, 1, x.shape) + + assert P.shape == (self.dim_x, self.dim_x), \ + "Shape of P must be ({},{}), but is {}".format( + self.dim_x, self.dim_x, P.shape) + + assert Q.shape == (self.dim_x, self.dim_x), \ + "Shape of Q must be ({},{}), but is {}".format( + self.dim_x, self.dim_x, P.shape) + + assert F.shape == (self.dim_x, self.dim_x), \ + "Shape of F must be ({},{}), but is {}".format( + self.dim_x, self.dim_x, F.shape) + + assert np.ndim(H) == 2, \ + "Shape of H must be (dim_z, {}), but is {}".format( + P.shape[0], shape(H)) + + assert H.shape[1] == P.shape[0], \ + "Shape of H must be (dim_z, {}), but is {}".format( + P.shape[0], H.shape) + + # shape of R must be the same as HPH' + hph_shape = (H.shape[0], H.shape[0]) + r_shape = shape(R) + + if H.shape[0] == 1: + # r can be scalar, 1D, or 2D in this case + assert r_shape in [(), (1,), (1, 1)], \ + "R must be scalar or one element array, but is shaped {}".format( + r_shape) + else: + assert r_shape == hph_shape, \ + "shape of R should be {} but it is {}".format(hph_shape, r_shape) + + + if z is not None: + z_shape = shape(z) + else: + z_shape = (self.dim_z, 1) + + # H@x must have shape of z + Hx = dot(H, x) + + if z_shape == (): # scalar or np.array(scalar) + assert Hx.ndim == 1 or shape(Hx) == (1, 1), \ + "shape of z should be {}, not {} for the given H".format( + shape(Hx), z_shape) + + elif shape(Hx) == (1,): + assert z_shape[0] == 1, 'Shape of z must be {} for the given H'.format(shape(Hx)) + + else: + assert (z_shape == shape(Hx) or + (len(z_shape) == 1 and shape(Hx) == (z_shape[0], 1))), \ + "shape of z should be {}, not {} for the given H".format( + shape(Hx), z_shape) + + if np.ndim(Hx) > 1 and shape(Hx) != (1, 1): + assert shape(Hx) == z_shape, \ + 'shape of z should be {} for the given H, but it is {}'.format( + shape(Hx), z_shape) + + +def update(x, P, z, R, H=None, return_all=False): + """ + Add a new measurement (z) to the Kalman filter. If z is None, nothing + is changed. + This can handle either the multidimensional or unidimensional case. If + all parameters are floats instead of arrays the filter will still work, + and return floats for x, P as the result. + update(1, 2, 1, 1, 1) # univariate + update(x, P, 1 + Parameters + ---------- + x : numpy.array(dim_x, 1), or float + State estimate vector + P : numpy.array(dim_x, dim_x), or float + Covariance matrix + z : (dim_z, 1): array_like + measurement for this update. z can be a scalar if dim_z is 1, + otherwise it must be convertible to a column vector. + R : numpy.array(dim_z, dim_z), or float + Measurement noise matrix + H : numpy.array(dim_x, dim_x), or float, optional + Measurement function. If not provided, a value of 1 is assumed. + return_all : bool, default False + If true, y, K, S, and log_likelihood are returned, otherwise + only x and P are returned. + Returns + ------- + x : numpy.array + Posterior state estimate vector + P : numpy.array + Posterior covariance matrix + y : numpy.array or scalar + Residua. Difference between measurement and state in measurement space + K : numpy.array + Kalman gain + S : numpy.array + System uncertainty in measurement space + log_likelihood : float + log likelihood of the measurement + """ + + #pylint: disable=bare-except + + if z is None: + if return_all: + return x, P, None, None, None, None + return x, P + + if H is None: + H = np.array([1]) + + if np.isscalar(H): + H = np.array([H]) + + Hx = np.atleast_1d(dot(H, x)) + z = reshape_z(z, Hx.shape[0], x.ndim) + + # error (residual) between measurement and prediction + y = z - Hx + + # project system uncertainty into measurement space + S = dot(dot(H, P), H.T) + R + + + # map system uncertainty into kalman gain + try: + K = dot(dot(P, H.T), linalg.inv(S)) + except: + # can't invert a 1D array, annoyingly + K = dot(dot(P, H.T), 1./S) + + + # predict new x with residual scaled by the kalman gain + x = x + dot(K, y) + + # P = (I-KH)P(I-KH)' + KRK' + KH = dot(K, H) + + try: + I_KH = np.eye(KH.shape[0]) - KH + except: + I_KH = np.array([1 - KH]) + P = dot(dot(I_KH, P), I_KH.T) + dot(dot(K, R), K.T) + + + if return_all: + # compute log likelihood + log_likelihood = logpdf(z, dot(H, x), S) + return x, P, y, K, S, log_likelihood + return x, P + + +def update_steadystate(x, z, K, H=None): + """ + Add a new measurement (z) to the Kalman filter. If z is None, nothing + is changed. + Parameters + ---------- + x : numpy.array(dim_x, 1), or float + State estimate vector + z : (dim_z, 1): array_like + measurement for this update. z can be a scalar if dim_z is 1, + otherwise it must be convertible to a column vector. + K : numpy.array, or float + Kalman gain matrix + H : numpy.array(dim_x, dim_x), or float, optional + Measurement function. If not provided, a value of 1 is assumed. + Returns + ------- + x : numpy.array + Posterior state estimate vector + Examples + -------- + This can handle either the multidimensional or unidimensional case. If + all parameters are floats instead of arrays the filter will still work, + and return floats for x, P as the result. + >>> update_steadystate(1, 2, 1) # univariate + >>> update_steadystate(x, P, z, H) + """ + + + if z is None: + return x + + if H is None: + H = np.array([1]) + + if np.isscalar(H): + H = np.array([H]) + + Hx = np.atleast_1d(dot(H, x)) + z = reshape_z(z, Hx.shape[0], x.ndim) + + # error (residual) between measurement and prediction + y = z - Hx + + # estimate new x with residual scaled by the kalman gain + return x + dot(K, y) + + +def predict(x, P, F=1, Q=0, u=0, B=1, alpha=1.): + """ + Predict next state (prior) using the Kalman filter state propagation + equations. + Parameters + ---------- + x : numpy.array + State estimate vector + P : numpy.array + Covariance matrix + F : numpy.array() + State Transition matrix + Q : numpy.array, Optional + Process noise matrix + u : numpy.array, Optional, default 0. + Control vector. If non-zero, it is multiplied by B + to create the control input into the system. + B : numpy.array, optional, default 0. + Control transition matrix. + alpha : float, Optional, default=1.0 + Fading memory setting. 1.0 gives the normal Kalman filter, and + values slightly larger than 1.0 (such as 1.02) give a fading + memory effect - previous measurements have less influence on the + filter's estimates. This formulation of the Fading memory filter + (there are many) is due to Dan Simon + Returns + ------- + x : numpy.array + Prior state estimate vector + P : numpy.array + Prior covariance matrix + """ + + if np.isscalar(F): + F = np.array(F) + x = dot(F, x) + dot(B, u) + P = (alpha * alpha) * dot(dot(F, P), F.T) + Q + + return x, P + + +def predict_steadystate(x, F=1, u=0, B=1): + """ + Predict next state (prior) using the Kalman filter state propagation + equations. This steady state form only computes x, assuming that the + covariance is constant. + Parameters + ---------- + x : numpy.array + State estimate vector + P : numpy.array + Covariance matrix + F : numpy.array() + State Transition matrix + u : numpy.array, Optional, default 0. + Control vector. If non-zero, it is multiplied by B + to create the control input into the system. + B : numpy.array, optional, default 0. + Control transition matrix. + Returns + ------- + x : numpy.array + Prior state estimate vector + """ + + if np.isscalar(F): + F = np.array(F) + x = dot(F, x) + dot(B, u) + + return x + + + +def batch_filter(x, P, zs, Fs, Qs, Hs, Rs, Bs=None, us=None, + update_first=False, saver=None): + """ + Batch processes a sequences of measurements. + Parameters + ---------- + zs : list-like + list of measurements at each time step. Missing measurements must be + represented by None. + Fs : list-like + list of values to use for the state transition matrix matrix. + Qs : list-like + list of values to use for the process error + covariance. + Hs : list-like + list of values to use for the measurement matrix. + Rs : list-like + list of values to use for the measurement error + covariance. + Bs : list-like, optional + list of values to use for the control transition matrix; + a value of None in any position will cause the filter + to use `self.B` for that time step. + us : list-like, optional + list of values to use for the control input vector; + a value of None in any position will cause the filter to use + 0 for that time step. + update_first : bool, optional + controls whether the order of operations is update followed by + predict, or predict followed by update. Default is predict->update. + saver : filterpy.common.Saver, optional + filterpy.common.Saver object. If provided, saver.save() will be + called after every epoch + Returns + ------- + means : np.array((n,dim_x,1)) + array of the state for each time step after the update. Each entry + is an np.array. In other words `means[k,:]` is the state at step + `k`. + covariance : np.array((n,dim_x,dim_x)) + array of the covariances for each time step after the update. + In other words `covariance[k,:,:]` is the covariance at step `k`. + means_predictions : np.array((n,dim_x,1)) + array of the state for each time step after the predictions. Each + entry is an np.array. In other words `means[k,:]` is the state at + step `k`. + covariance_predictions : np.array((n,dim_x,dim_x)) + array of the covariances for each time step after the prediction. + In other words `covariance[k,:,:]` is the covariance at step `k`. + Examples + -------- + .. code-block:: Python + zs = [t + random.randn()*4 for t in range (40)] + Fs = [kf.F for t in range (40)] + Hs = [kf.H for t in range (40)] + (mu, cov, _, _) = kf.batch_filter(zs, Rs=R_list, Fs=Fs, Hs=Hs, Qs=None, + Bs=None, us=None, update_first=False) + (xs, Ps, Ks, Pps) = kf.rts_smoother(mu, cov, Fs=Fs, Qs=None) + """ + + n = np.size(zs, 0) + dim_x = x.shape[0] + + # mean estimates from Kalman Filter + if x.ndim == 1: + means = zeros((n, dim_x)) + means_p = zeros((n, dim_x)) + else: + means = zeros((n, dim_x, 1)) + means_p = zeros((n, dim_x, 1)) + + # state covariances from Kalman Filter + covariances = zeros((n, dim_x, dim_x)) + covariances_p = zeros((n, dim_x, dim_x)) + + if us is None: + us = [0.] * n + Bs = [0.] * n + + if update_first: + for i, (z, F, Q, H, R, B, u) in enumerate(zip(zs, Fs, Qs, Hs, Rs, Bs, us)): + + x, P = update(x, P, z, R=R, H=H) + means[i, :] = x + covariances[i, :, :] = P + + x, P = predict(x, P, u=u, B=B, F=F, Q=Q) + means_p[i, :] = x + covariances_p[i, :, :] = P + if saver is not None: + saver.save() + else: + for i, (z, F, Q, H, R, B, u) in enumerate(zip(zs, Fs, Qs, Hs, Rs, Bs, us)): + + x, P = predict(x, P, u=u, B=B, F=F, Q=Q) + means_p[i, :] = x + covariances_p[i, :, :] = P + + x, P = update(x, P, z, R=R, H=H) + means[i, :] = x + covariances[i, :, :] = P + if saver is not None: + saver.save() + + return (means, covariances, means_p, covariances_p) + + + +def rts_smoother(Xs, Ps, Fs, Qs): + """ + Runs the Rauch-Tung-Striebel Kalman smoother on a set of + means and covariances computed by a Kalman filter. The usual input + would come from the output of `KalmanFilter.batch_filter()`. + Parameters + ---------- + Xs : numpy.array + array of the means (state variable x) of the output of a Kalman + filter. + Ps : numpy.array + array of the covariances of the output of a kalman filter. + Fs : list-like collection of numpy.array + State transition matrix of the Kalman filter at each time step. + Qs : list-like collection of numpy.array, optional + Process noise of the Kalman filter at each time step. + Returns + ------- + x : numpy.ndarray + smoothed means + P : numpy.ndarray + smoothed state covariances + K : numpy.ndarray + smoother gain at each step + pP : numpy.ndarray + predicted state covariances + Examples + -------- + .. code-block:: Python + zs = [t + random.randn()*4 for t in range (40)] + (mu, cov, _, _) = kalman.batch_filter(zs) + (x, P, K, pP) = rts_smoother(mu, cov, kf.F, kf.Q) + """ + + if len(Xs) != len(Ps): + raise ValueError('length of Xs and Ps must be the same') + + n = Xs.shape[0] + dim_x = Xs.shape[1] + + # smoother gain + K = zeros((n, dim_x, dim_x)) + x, P, pP = Xs.copy(), Ps.copy(), Ps.copy() + + for k in range(n-2, -1, -1): + pP[k] = dot(dot(Fs[k], P[k]), Fs[k].T) + Qs[k] + + #pylint: disable=bad-whitespace + K[k] = dot(dot(P[k], Fs[k].T), linalg.inv(pP[k])) + x[k] += dot(K[k], x[k+1] - dot(Fs[k], x[k])) + P[k] += dot(dot(K[k], P[k+1] - pP[k]), K[k].T) + + return (x, P, K, pP) \ No newline at end of file diff --git a/trackers/hybrid_sort_tracker/kalmanfilter_score.py b/trackers/hybrid_sort_tracker/kalmanfilter_score.py new file mode 100644 index 0000000000000000000000000000000000000000..64d00b91f5333825d5168cf682c9a7203de36fd0 --- /dev/null +++ b/trackers/hybrid_sort_tracker/kalmanfilter_score.py @@ -0,0 +1,1586 @@ +# -*- coding: utf-8 -*- +# pylint: disable=invalid-name, too-many-arguments, too-many-branches, +# pylint: disable=too-many-locals, too-many-instance-attributes, too-many-lines + +""" +This module implements the linear Kalman filter in both an object +oriented and procedural form. The KalmanFilter class implements +the filter by storing the various matrices in instance variables, +minimizing the amount of bookkeeping you have to do. +All Kalman filters operate with a predict->update cycle. The +predict step, implemented with the method or function predict(), +uses the state transition matrix F to predict the state in the next +time period (epoch). The state is stored as a gaussian (x, P), where +x is the state (column) vector, and P is its covariance. Covariance +matrix Q specifies the process covariance. In Bayesian terms, this +prediction is called the *prior*, which you can think of colloquially +as the estimate prior to incorporating the measurement. +The update step, implemented with the method or function `update()`, +incorporates the measurement z with covariance R, into the state +estimate (x, P). The class stores the system uncertainty in S, +the innovation (residual between prediction and measurement in +measurement space) in y, and the Kalman gain in k. The procedural +form returns these variables to you. In Bayesian terms this computes +the *posterior* - the estimate after the information from the +measurement is incorporated. +Whether you use the OO form or procedural form is up to you. If +matrices such as H, R, and F are changing each epoch, you'll probably +opt to use the procedural form. If they are unchanging, the OO +form is perhaps easier to use since you won't need to keep track +of these matrices. This is especially useful if you are implementing +banks of filters or comparing various KF designs for performance; +a trivial coding bug could lead to using the wrong sets of matrices. +This module also offers an implementation of the RTS smoother, and +other helper functions, such as log likelihood computations. +The Saver class allows you to easily save the state of the +KalmanFilter class after every update +This module expects NumPy arrays for all values that expect +arrays, although in a few cases, particularly method parameters, +it will accept types that convert to NumPy arrays, such as lists +of lists. These exceptions are documented in the method or function. +Examples +-------- +The following example constructs a constant velocity kinematic +filter, filters noisy data, and plots the results. It also demonstrates +using the Saver class to save the state of the filter at each epoch. +.. code-block:: Python + import matplotlib.pyplot as plt + import numpy as np + from filterpy.kalman import KalmanFilter + from filterpy.common import Q_discrete_white_noise, Saver + r_std, q_std = 2., 0.003 + cv = KalmanFilter(dim_x=2, dim_z=1) + cv.x = np.array([[0., 1.]]) # position, velocity + cv.F = np.array([[1, dt],[ [0, 1]]) + cv.R = np.array([[r_std^^2]]) + f.H = np.array([[1., 0.]]) + f.P = np.diag([.1^^2, .03^^2) + f.Q = Q_discrete_white_noise(2, dt, q_std**2) + saver = Saver(cv) + for z in range(100): + cv.predict() + cv.update([z + randn() * r_std]) + saver.save() # save the filter's state + saver.to_array() + plt.plot(saver.x[:, 0]) + # plot all of the priors + plt.plot(saver.x_prior[:, 0]) + # plot mahalanobis distance + plt.figure() + plt.plot(saver.mahalanobis) +This code implements the same filter using the procedural form + x = np.array([[0., 1.]]) # position, velocity + F = np.array([[1, dt],[ [0, 1]]) + R = np.array([[r_std^^2]]) + H = np.array([[1., 0.]]) + P = np.diag([.1^^2, .03^^2) + Q = Q_discrete_white_noise(2, dt, q_std**2) + for z in range(100): + x, P = predict(x, P, F=F, Q=Q) + x, P = update(x, P, z=[z + randn() * r_std], R=R, H=H) + xs.append(x[0, 0]) + plt.plot(xs) +For more examples see the test subdirectory, or refer to the +book cited below. In it I both teach Kalman filtering from basic +principles, and teach the use of this library in great detail. +FilterPy library. +http://github.com/rlabbe/filterpy +Documentation at: +https://filterpy.readthedocs.org +Supporting book at: +https://github.com/rlabbe/Kalman-and-Bayesian-Filters-in-Python +This is licensed under an MIT license. See the readme.MD file +for more information. +Copyright 2014-2018 Roger R Labbe Jr. +""" + +from __future__ import absolute_import, division + +from copy import deepcopy +from math import log, exp, sqrt +import sys +import numpy as np +from numpy import dot, zeros, eye, isscalar, shape +import numpy.linalg as linalg +from filterpy.stats import logpdf +from filterpy.common import pretty_str, reshape_z + + +class KalmanFilterNew_score(object): + """ Implements a Kalman filter. You are responsible for setting the + various state variables to reasonable values; the defaults will + not give you a functional filter. + For now the best documentation is my free book Kalman and Bayesian + Filters in Python [2]_. The test files in this directory also give you a + basic idea of use, albeit without much description. + In brief, you will first construct this object, specifying the size of + the state vector with dim_x and the size of the measurement vector that + you will be using with dim_z. These are mostly used to perform size checks + when you assign values to the various matrices. For example, if you + specified dim_z=2 and then try to assign a 3x3 matrix to R (the + measurement noise matrix you will get an assert exception because R + should be 2x2. (If for whatever reason you need to alter the size of + things midstream just use the underscore version of the matrices to + assign directly: your_filter._R = a_3x3_matrix.) + After construction the filter will have default matrices created for you, + but you must specify the values for each. It’s usually easiest to just + overwrite them rather than assign to each element yourself. This will be + clearer in the example below. All are of type numpy.array. + Examples + -------- + Here is a filter that tracks position and velocity using a sensor that only + reads position. + First construct the object with the required dimensionality. Here the state + (`dim_x`) has 2 coefficients (position and velocity), and the measurement + (`dim_z`) has one. In FilterPy `x` is the state, `z` is the measurement. + .. code:: + from filterpy.kalman import KalmanFilter + f = KalmanFilter (dim_x=2, dim_z=1) + Assign the initial value for the state (position and velocity). You can do this + with a two dimensional array like so: + .. code:: + f.x = np.array([[2.], # position + [0.]]) # velocity + or just use a one dimensional array, which I prefer doing. + .. code:: + f.x = np.array([2., 0.]) + Define the state transition matrix: + .. code:: + f.F = np.array([[1.,1.], + [0.,1.]]) + Define the measurement function. Here we need to convert a position-velocity + vector into just a position vector, so we use: + .. code:: + f.H = np.array([[1., 0.]]) + Define the state's covariance matrix P. + .. code:: + f.P = np.array([[1000., 0.], + [ 0., 1000.] ]) + Now assign the measurement noise. Here the dimension is 1x1, so I can + use a scalar + .. code:: + f.R = 5 + I could have done this instead: + .. code:: + f.R = np.array([[5.]]) + Note that this must be a 2 dimensional array. + Finally, I will assign the process noise. Here I will take advantage of + another FilterPy library function: + .. code:: + from filterpy.common import Q_discrete_white_noise + f.Q = Q_discrete_white_noise(dim=2, dt=0.1, var=0.13) + Now just perform the standard predict/update loop: + .. code:: + while some_condition_is_true: + z = get_sensor_reading() + f.predict() + f.update(z) + do_something_with_estimate (f.x) + **Procedural Form** + This module also contains stand alone functions to perform Kalman filtering. + Use these if you are not a fan of objects. + **Example** + .. code:: + while True: + z, R = read_sensor() + x, P = predict(x, P, F, Q) + x, P = update(x, P, z, R, H) + See my book Kalman and Bayesian Filters in Python [2]_. + You will have to set the following attributes after constructing this + object for the filter to perform properly. Please note that there are + various checks in place to ensure that you have made everything the + 'correct' size. However, it is possible to provide incorrectly sized + arrays such that the linear algebra can not perform an operation. + It can also fail silently - you can end up with matrices of a size that + allows the linear algebra to work, but are the wrong shape for the problem + you are trying to solve. + Parameters + ---------- + dim_x : int + Number of state variables for the Kalman filter. For example, if + you are tracking the position and velocity of an object in two + dimensions, dim_x would be 4. + This is used to set the default size of P, Q, and u + dim_z : int + Number of of measurement inputs. For example, if the sensor + provides you with position in (x,y), dim_z would be 2. + dim_u : int (optional) + size of the control input, if it is being used. + Default value of 0 indicates it is not used. + compute_log_likelihood : bool (default = True) + Computes log likelihood by default, but this can be a slow + computation, so if you never use it you can turn this computation + off. + Attributes + ---------- + x : numpy.array(dim_x, 1) + Current state estimate. Any call to update() or predict() updates + this variable. + P : numpy.array(dim_x, dim_x) + Current state covariance matrix. Any call to update() or predict() + updates this variable. + x_prior : numpy.array(dim_x, 1) + Prior (predicted) state estimate. The *_prior and *_post attributes + are for convenience; they store the prior and posterior of the + current epoch. Read Only. + P_prior : numpy.array(dim_x, dim_x) + Prior (predicted) state covariance matrix. Read Only. + x_post : numpy.array(dim_x, 1) + Posterior (updated) state estimate. Read Only. + P_post : numpy.array(dim_x, dim_x) + Posterior (updated) state covariance matrix. Read Only. + z : numpy.array + Last measurement used in update(). Read only. + R : numpy.array(dim_z, dim_z) + Measurement noise covariance matrix. Also known as the + observation covariance. + Q : numpy.array(dim_x, dim_x) + Process noise covariance matrix. Also known as the transition + covariance. + F : numpy.array() + State Transition matrix. Also known as `A` in some formulation. + H : numpy.array(dim_z, dim_x) + Measurement function. Also known as the observation matrix, or as `C`. + y : numpy.array + Residual of the update step. Read only. + K : numpy.array(dim_x, dim_z) + Kalman gain of the update step. Read only. + S : numpy.array + System uncertainty (P projected to measurement space). Read only. + SI : numpy.array + Inverse system uncertainty. Read only. + log_likelihood : float + log-likelihood of the last measurement. Read only. + likelihood : float + likelihood of last measurement. Read only. + Computed from the log-likelihood. The log-likelihood can be very + small, meaning a large negative value such as -28000. Taking the + exp() of that results in 0.0, which can break typical algorithms + which multiply by this value, so by default we always return a + number >= sys.float_info.min. + mahalanobis : float + mahalanobis distance of the innovation. Read only. + inv : function, default numpy.linalg.inv + If you prefer another inverse function, such as the Moore-Penrose + pseudo inverse, set it to that instead: kf.inv = np.linalg.pinv + This is only used to invert self.S. If you know it is diagonal, you + might choose to set it to filterpy.common.inv_diagonal, which is + several times faster than numpy.linalg.inv for diagonal matrices. + alpha : float + Fading memory setting. 1.0 gives the normal Kalman filter, and + values slightly larger than 1.0 (such as 1.02) give a fading + memory effect - previous measurements have less influence on the + filter's estimates. This formulation of the Fading memory filter + (there are many) is due to Dan Simon [1]_. + References + ---------- + .. [1] Dan Simon. "Optimal State Estimation." John Wiley & Sons. + p. 208-212. (2006) + .. [2] Roger Labbe. "Kalman and Bayesian Filters in Python" + https://github.com/rlabbe/Kalman-and-Bayesian-Filters-in-Python + """ + + def __init__(self, dim_x, dim_z, dim_u=0, args=None): + if dim_x < 1: + raise ValueError('dim_x must be 1 or greater') + if dim_z < 1: + raise ValueError('dim_z must be 1 or greater') + if dim_u < 0: + raise ValueError('dim_u must be 0 or greater') + + self.dim_x = dim_x + self.dim_z = dim_z + self.dim_u = dim_u + + self.x = zeros((dim_x, 1)) # state + self.P = eye(dim_x) # uncertainty covariance + self.Q = eye(dim_x) # process uncertainty + self.B = None # control transition matrix + self.F = eye(dim_x) # state transition matrix + self.H = zeros((dim_z, dim_x)) # measurement function + self.R = eye(dim_z) # measurement uncertainty + self._alpha_sq = 1. # fading memory control + self.M = np.zeros((dim_x, dim_z)) # process-measurement cross correlation + self.z = np.array([[None]*self.dim_z]).T + + # gain and residual are computed during the innovation step. We + # save them so that in case you want to inspect them for various + # purposes + self.K = np.zeros((dim_x, dim_z)) # kalman gain + self.y = zeros((dim_z, 1)) + self.S = np.zeros((dim_z, dim_z)) # system uncertainty + self.SI = np.zeros((dim_z, dim_z)) # inverse system uncertainty + + # identity matrix. Do not alter this. + self._I = np.eye(dim_x) + + # these will always be a copy of x,P after predict() is called + self.x_prior = self.x.copy() + self.P_prior = self.P.copy() + + # these will always be a copy of x,P after update() is called + self.x_post = self.x.copy() + self.P_post = self.P.copy() + + # Only computed only if requested via property + self._log_likelihood = log(sys.float_info.min) + self._likelihood = sys.float_info.min + self._mahalanobis = None + + # keep all observations + self.history_obs = [] + + self.inv = np.linalg.inv + + self.attr_saved = None + self.observed = False + self.args = args + + + def predict(self, u=None, B=None, F=None, Q=None): + """ + Predict next state (prior) using the Kalman filter state propagation + equations. + Parameters + ---------- + u : np.array, default 0 + Optional control vector. + B : np.array(dim_x, dim_u), or None + Optional control transition matrix; a value of None + will cause the filter to use `self.B`. + F : np.array(dim_x, dim_x), or None + Optional state transition matrix; a value of None + will cause the filter to use `self.F`. + Q : np.array(dim_x, dim_x), scalar, or None + Optional process noise matrix; a value of None will cause the + filter to use `self.Q`. + """ + + if B is None: + B = self.B + if F is None: + F = self.F + if Q is None: + Q = self.Q + elif isscalar(Q): + Q = eye(self.dim_x) * Q + + + # x = Fx + Bu + if B is not None and u is not None: + self.x = dot(F, self.x) + dot(B, u) + else: + self.x = dot(F, self.x) + + # P = FPF' + Q + self.P = self._alpha_sq * dot(dot(F, self.P), F.T) + Q + + # save prior + self.x_prior = self.x.copy() + self.P_prior = self.P.copy() + + + def freeze(self): + """ + Save the parameters before non-observation forward + """ + self.attr_saved = deepcopy(self.__dict__) + + + def unfreeze(self): + if self.attr_saved is not None: + new_history = deepcopy(self.history_obs) + self.__dict__ = self.attr_saved + # self.history_obs = new_history + self.history_obs = self.history_obs[:-1] + occur = [int(d is None) for d in new_history] + indices = np.where(np.array(occur)==0)[0] + index1 = indices[-2] + index2 = indices[-1] + score1 = new_history[index1] + # x1, y1, s1, r1 = box1 + # w1 = np.sqrt(s1 * r1) + # h1 = np.sqrt(s1 / r1) + score2 = new_history[index2] + # x2, y2, s2, r2 = box2 + # w2 = np.sqrt(s2 * r2) + # h2 = np.sqrt(s2 / r2) + time_gap = index2 - index1 + # dx = (x2-x1)/time_gap + # dy = (y2-y1)/time_gap + # dw = (w2-w1)/time_gap + # dh = (h2-h1)/time_gap + dscore = (score2 - score1) / time_gap + for i in range(index2 - index1): + """ + The default virtual trajectory generation is by linear + motion (constant speed hypothesis), you could modify this + part to implement your own. + """ + # x = x1 + (i+1) * dx + # y = y1 + (i+1) * dy + # w = w1 + (i+1) * dw + # h = h1 + (i+1) * dh + # s = w * h + # r = w / float(h) + score = score1 + (i+1) * dscore + new_score = np.array([score]).reshape((1, 1)) + """ + I still use predict-update loop here to refresh the parameters, + but this can be faster by directly modifying the internal parameters + as suggested in the paper. I keep this naive but slow way for + easy read and understanding + """ + self.update(new_score) + if not i == (index2-index1-1): + self.predict() + + + def update(self, z, R=None, H=None, confidence=0.0): + """ + Add a new measurement (z) to the Kalman filter. + If z is None, nothing is computed. However, x_post and P_post are + updated with the prior (x_prior, P_prior), and self.z is set to None. + Parameters + ---------- + z : (dim_z, 1): array_like + measurement for this update. z can be a scalar if dim_z is 1, + otherwise it must be convertible to a column vector. + If you pass in a value of H, z must be a column vector the + of the correct size. + R : np.array, scalar, or None + Optionally provide R to override the measurement noise for this + one call, otherwise self.R will be used. + H : np.array, or None + Optionally provide H to override the measurement function for this + one call, otherwise self.H will be used. + """ + + # set to None to force recompute + self._log_likelihood = None + self._likelihood = None + self._mahalanobis = None + + # append the observation + self.history_obs.append(z) + + if z is None: + if self.observed: + """ + Got no observation so freeze the current parameters for future + potential online smoothing. + """ + self.freeze() + self.observed = False + self.z = np.array([[None]*self.dim_z]).T + self.x_post = self.x.copy() + self.P_post = self.P.copy() + self.y = zeros((self.dim_z, 1)) + return + + # self.observed = True + if not self.observed: + """ + Get observation, use online smoothing to re-update parameters + """ + self.unfreeze() + self.observed = True + + if R is None: + R = self.R + elif isscalar(R): + R = eye(self.dim_z) * R + + # if self.args.use_nsa_kalman: + # R = [(1 - confidence) * self.args.nsa_kalman_interval * x for x in R] + + if H is None: + z = reshape_z(z, self.dim_z, self.x.ndim) + H = self.H + + # y = z - Hx + # error (residual) between measurement and prediction + self.y = z - dot(H, self.x) + + # common subexpression for speed + PHT = dot(self.P, H.T) + + # S = HPH' + R + # project system uncertainty into measurement space + self.S = dot(H, PHT) + R + self.SI = self.inv(self.S) + # K = PH'inv(S) + # map system uncertainty into kalman gain + self.K = dot(PHT, self.SI) + + # x = x + Ky + # predict new x with residual scaled by the kalman gain + self.x = self.x + dot(self.K, self.y) + + # P = (I-KH)P(I-KH)' + KRK' + # This is more numerically stable + # and works for non-optimal K vs the equation + # P = (I-KH)P usually seen in the literature. + + I_KH = self._I - dot(self.K, H) + self.P = dot(dot(I_KH, self.P), I_KH.T) + dot(dot(self.K, R), self.K.T) + + # save measurement and posterior state + self.z = deepcopy(z) + self.x_post = self.x.copy() + self.P_post = self.P.copy() + + def predict_steadystate(self, u=0, B=None): + """ + Predict state (prior) using the Kalman filter state propagation + equations. Only x is updated, P is left unchanged. See + update_steadstate() for a longer explanation of when to use this + method. + Parameters + ---------- + u : np.array + Optional control vector. If non-zero, it is multiplied by B + to create the control input into the system. + B : np.array(dim_x, dim_u), or None + Optional control transition matrix; a value of None + will cause the filter to use `self.B`. + """ + + if B is None: + B = self.B + + # x = Fx + Bu + if B is not None: + self.x = dot(self.F, self.x) + dot(B, u) + else: + self.x = dot(self.F, self.x) + + # save prior + self.x_prior = self.x.copy() + self.P_prior = self.P.copy() + + def update_steadystate(self, z): + """ + Add a new measurement (z) to the Kalman filter without recomputing + the Kalman gain K, the state covariance P, or the system + uncertainty S. + You can use this for LTI systems since the Kalman gain and covariance + converge to a fixed value. Precompute these and assign them explicitly, + or run the Kalman filter using the normal predict()/update(0 cycle + until they converge. + The main advantage of this call is speed. We do significantly less + computation, notably avoiding a costly matrix inversion. + Use in conjunction with predict_steadystate(), otherwise P will grow + without bound. + Parameters + ---------- + z : (dim_z, 1): array_like + measurement for this update. z can be a scalar if dim_z is 1, + otherwise it must be convertible to a column vector. + Examples + -------- + >>> cv = kinematic_kf(dim=3, order=2) # 3D const velocity filter + >>> # let filter converge on representative data, then save k and P + >>> for i in range(100): + >>> cv.predict() + >>> cv.update([i, i, i]) + >>> saved_k = np.copy(cv.K) + >>> saved_P = np.copy(cv.P) + later on: + >>> cv = kinematic_kf(dim=3, order=2) # 3D const velocity filter + >>> cv.K = np.copy(saved_K) + >>> cv.P = np.copy(saved_P) + >>> for i in range(100): + >>> cv.predict_steadystate() + >>> cv.update_steadystate([i, i, i]) + """ + + # set to None to force recompute + self._log_likelihood = None + self._likelihood = None + self._mahalanobis = None + + if z is None: + self.z = np.array([[None]*self.dim_z]).T + self.x_post = self.x.copy() + self.P_post = self.P.copy() + self.y = zeros((self.dim_z, 1)) + return + + z = reshape_z(z, self.dim_z, self.x.ndim) + + # y = z - Hx + # error (residual) between measurement and prediction + self.y = z - dot(self.H, self.x) + + # x = x + Ky + # predict new x with residual scaled by the kalman gain + self.x = self.x + dot(self.K, self.y) + + self.z = deepcopy(z) + self.x_post = self.x.copy() + self.P_post = self.P.copy() + + # set to None to force recompute + self._log_likelihood = None + self._likelihood = None + self._mahalanobis = None + + def update_correlated(self, z, R=None, H=None): + """ Add a new measurement (z) to the Kalman filter assuming that + process noise and measurement noise are correlated as defined in + the `self.M` matrix. + A partial derivation can be found in [1] + If z is None, nothing is changed. + Parameters + ---------- + z : (dim_z, 1): array_like + measurement for this update. z can be a scalar if dim_z is 1, + otherwise it must be convertible to a column vector. + R : np.array, scalar, or None + Optionally provide R to override the measurement noise for this + one call, otherwise self.R will be used. + H : np.array, or None + Optionally provide H to override the measurement function for this + one call, otherwise self.H will be used. + References + ---------- + .. [1] Bulut, Y. (2011). Applied Kalman filter theory (Doctoral dissertation, Northeastern University). + http://people.duke.edu/~hpgavin/SystemID/References/Balut-KalmanFilter-PhD-NEU-2011.pdf + """ + + # set to None to force recompute + self._log_likelihood = None + self._likelihood = None + self._mahalanobis = None + + if z is None: + self.z = np.array([[None]*self.dim_z]).T + self.x_post = self.x.copy() + self.P_post = self.P.copy() + self.y = zeros((self.dim_z, 1)) + return + + if R is None: + R = self.R + elif isscalar(R): + R = eye(self.dim_z) * R + + # rename for readability and a tiny extra bit of speed + if H is None: + z = reshape_z(z, self.dim_z, self.x.ndim) + H = self.H + + # handle special case: if z is in form [[z]] but x is not a column + # vector dimensions will not match + if self.x.ndim == 1 and shape(z) == (1, 1): + z = z[0] + + if shape(z) == (): # is it scalar, e.g. z=3 or z=np.array(3) + z = np.asarray([z]) + + # y = z - Hx + # error (residual) between measurement and prediction + self.y = z - dot(H, self.x) + + # common subexpression for speed + PHT = dot(self.P, H.T) + + # project system uncertainty into measurement space + self.S = dot(H, PHT) + dot(H, self.M) + dot(self.M.T, H.T) + R + self.SI = self.inv(self.S) + + # K = PH'inv(S) + # map system uncertainty into kalman gain + self.K = dot(PHT + self.M, self.SI) + + # x = x + Ky + # predict new x with residual scaled by the kalman gain + self.x = self.x + dot(self.K, self.y) + self.P = self.P - dot(self.K, dot(H, self.P) + self.M.T) + + self.z = deepcopy(z) + self.x_post = self.x.copy() + self.P_post = self.P.copy() + + def batch_filter(self, zs, Fs=None, Qs=None, Hs=None, + Rs=None, Bs=None, us=None, update_first=False, + saver=None): + """ Batch processes a sequences of measurements. + Parameters + ---------- + zs : list-like + list of measurements at each time step `self.dt`. Missing + measurements must be represented by `None`. + Fs : None, list-like, default=None + optional value or list of values to use for the state transition + matrix F. + If Fs is None then self.F is used for all epochs. + Otherwise it must contain a list-like list of F's, one for + each epoch. This allows you to have varying F per epoch. + Qs : None, np.array or list-like, default=None + optional value or list of values to use for the process error + covariance Q. + If Qs is None then self.Q is used for all epochs. + Otherwise it must contain a list-like list of Q's, one for + each epoch. This allows you to have varying Q per epoch. + Hs : None, np.array or list-like, default=None + optional list of values to use for the measurement matrix H. + If Hs is None then self.H is used for all epochs. + If Hs contains a single matrix, then it is used as H for all + epochs. + Otherwise it must contain a list-like list of H's, one for + each epoch. This allows you to have varying H per epoch. + Rs : None, np.array or list-like, default=None + optional list of values to use for the measurement error + covariance R. + If Rs is None then self.R is used for all epochs. + Otherwise it must contain a list-like list of R's, one for + each epoch. This allows you to have varying R per epoch. + Bs : None, np.array or list-like, default=None + optional list of values to use for the control transition matrix B. + If Bs is None then self.B is used for all epochs. + Otherwise it must contain a list-like list of B's, one for + each epoch. This allows you to have varying B per epoch. + us : None, np.array or list-like, default=None + optional list of values to use for the control input vector; + If us is None then None is used for all epochs (equivalent to 0, + or no control input). + Otherwise it must contain a list-like list of u's, one for + each epoch. + update_first : bool, optional, default=False + controls whether the order of operations is update followed by + predict, or predict followed by update. Default is predict->update. + saver : filterpy.common.Saver, optional + filterpy.common.Saver object. If provided, saver.save() will be + called after every epoch + Returns + ------- + means : np.array((n,dim_x,1)) + array of the state for each time step after the update. Each entry + is an np.array. In other words `means[k,:]` is the state at step + `k`. + covariance : np.array((n,dim_x,dim_x)) + array of the covariances for each time step after the update. + In other words `covariance[k,:,:]` is the covariance at step `k`. + means_predictions : np.array((n,dim_x,1)) + array of the state for each time step after the predictions. Each + entry is an np.array. In other words `means[k,:]` is the state at + step `k`. + covariance_predictions : np.array((n,dim_x,dim_x)) + array of the covariances for each time step after the prediction. + In other words `covariance[k,:,:]` is the covariance at step `k`. + Examples + -------- + .. code-block:: Python + # this example demonstrates tracking a measurement where the time + # between measurement varies, as stored in dts. This requires + # that F be recomputed for each epoch. The output is then smoothed + # with an RTS smoother. + zs = [t + random.randn()*4 for t in range (40)] + Fs = [np.array([[1., dt], [0, 1]] for dt in dts] + (mu, cov, _, _) = kf.batch_filter(zs, Fs=Fs) + (xs, Ps, Ks, Pps) = kf.rts_smoother(mu, cov, Fs=Fs) + """ + + #pylint: disable=too-many-statements + n = np.size(zs, 0) + if Fs is None: + Fs = [self.F] * n + if Qs is None: + Qs = [self.Q] * n + if Hs is None: + Hs = [self.H] * n + if Rs is None: + Rs = [self.R] * n + if Bs is None: + Bs = [self.B] * n + if us is None: + us = [0] * n + + # mean estimates from Kalman Filter + if self.x.ndim == 1: + means = zeros((n, self.dim_x)) + means_p = zeros((n, self.dim_x)) + else: + means = zeros((n, self.dim_x, 1)) + means_p = zeros((n, self.dim_x, 1)) + + # state covariances from Kalman Filter + covariances = zeros((n, self.dim_x, self.dim_x)) + covariances_p = zeros((n, self.dim_x, self.dim_x)) + + if update_first: + for i, (z, F, Q, H, R, B, u) in enumerate(zip(zs, Fs, Qs, Hs, Rs, Bs, us)): + + self.update(z, R=R, H=H) + means[i, :] = self.x + covariances[i, :, :] = self.P + + self.predict(u=u, B=B, F=F, Q=Q) + means_p[i, :] = self.x + covariances_p[i, :, :] = self.P + + if saver is not None: + saver.save() + else: + for i, (z, F, Q, H, R, B, u) in enumerate(zip(zs, Fs, Qs, Hs, Rs, Bs, us)): + + self.predict(u=u, B=B, F=F, Q=Q) + means_p[i, :] = self.x + covariances_p[i, :, :] = self.P + + self.update(z, R=R, H=H) + means[i, :] = self.x + covariances[i, :, :] = self.P + + if saver is not None: + saver.save() + + return (means, covariances, means_p, covariances_p) + + def rts_smoother(self, Xs, Ps, Fs=None, Qs=None, inv=np.linalg.inv): + """ + Runs the Rauch-Tung-Striebel Kalman smoother on a set of + means and covariances computed by a Kalman filter. The usual input + would come from the output of `KalmanFilter.batch_filter()`. + Parameters + ---------- + Xs : numpy.array + array of the means (state variable x) of the output of a Kalman + filter. + Ps : numpy.array + array of the covariances of the output of a kalman filter. + Fs : list-like collection of numpy.array, optional + State transition matrix of the Kalman filter at each time step. + Optional, if not provided the filter's self.F will be used + Qs : list-like collection of numpy.array, optional + Process noise of the Kalman filter at each time step. Optional, + if not provided the filter's self.Q will be used + inv : function, default numpy.linalg.inv + If you prefer another inverse function, such as the Moore-Penrose + pseudo inverse, set it to that instead: kf.inv = np.linalg.pinv + Returns + ------- + x : numpy.ndarray + smoothed means + P : numpy.ndarray + smoothed state covariances + K : numpy.ndarray + smoother gain at each step + Pp : numpy.ndarray + Predicted state covariances + Examples + -------- + .. code-block:: Python + zs = [t + random.randn()*4 for t in range (40)] + (mu, cov, _, _) = kalman.batch_filter(zs) + (x, P, K, Pp) = rts_smoother(mu, cov, kf.F, kf.Q) + """ + + if len(Xs) != len(Ps): + raise ValueError('length of Xs and Ps must be the same') + + n = Xs.shape[0] + dim_x = Xs.shape[1] + + if Fs is None: + Fs = [self.F] * n + if Qs is None: + Qs = [self.Q] * n + + # smoother gain + K = zeros((n, dim_x, dim_x)) + + x, P, Pp = Xs.copy(), Ps.copy(), Ps.copy() + for k in range(n-2, -1, -1): + Pp[k] = dot(dot(Fs[k+1], P[k]), Fs[k+1].T) + Qs[k+1] + + #pylint: disable=bad-whitespace + K[k] = dot(dot(P[k], Fs[k+1].T), inv(Pp[k])) + x[k] += dot(K[k], x[k+1] - dot(Fs[k+1], x[k])) + P[k] += dot(dot(K[k], P[k+1] - Pp[k]), K[k].T) + + return (x, P, K, Pp) + + def get_prediction(self, u=None, B=None, F=None, Q=None): + """ + Predict next state (prior) using the Kalman filter state propagation + equations and returns it without modifying the object. + Parameters + ---------- + u : np.array, default 0 + Optional control vector. + B : np.array(dim_x, dim_u), or None + Optional control transition matrix; a value of None + will cause the filter to use `self.B`. + F : np.array(dim_x, dim_x), or None + Optional state transition matrix; a value of None + will cause the filter to use `self.F`. + Q : np.array(dim_x, dim_x), scalar, or None + Optional process noise matrix; a value of None will cause the + filter to use `self.Q`. + Returns + ------- + (x, P) : tuple + State vector and covariance array of the prediction. + """ + + if B is None: + B = self.B + if F is None: + F = self.F + if Q is None: + Q = self.Q + elif isscalar(Q): + Q = eye(self.dim_x) * Q + + # x = Fx + Bu + if B is not None and u is not None: + x = dot(F, self.x) + dot(B, u) + else: + x = dot(F, self.x) + + # P = FPF' + Q + P = self._alpha_sq * dot(dot(F, self.P), F.T) + Q + + return x, P + + def get_update(self, z=None): + """ + Computes the new estimate based on measurement `z` and returns it + without altering the state of the filter. + Parameters + ---------- + z : (dim_z, 1): array_like + measurement for this update. z can be a scalar if dim_z is 1, + otherwise it must be convertible to a column vector. + Returns + ------- + (x, P) : tuple + State vector and covariance array of the update. + """ + + if z is None: + return self.x, self.P + z = reshape_z(z, self.dim_z, self.x.ndim) + + R = self.R + H = self.H + P = self.P + x = self.x + + # error (residual) between measurement and prediction + y = z - dot(H, x) + + # common subexpression for speed + PHT = dot(P, H.T) + + # project system uncertainty into measurement space + S = dot(H, PHT) + R + + # map system uncertainty into kalman gain + K = dot(PHT, self.inv(S)) + + # predict new x with residual scaled by the kalman gain + x = x + dot(K, y) + + # P = (I-KH)P(I-KH)' + KRK' + I_KH = self._I - dot(K, H) + P = dot(dot(I_KH, P), I_KH.T) + dot(dot(K, R), K.T) + + return x, P + + def residual_of(self, z): + """ + Returns the residual for the given measurement (z). Does not alter + the state of the filter. + """ + z = reshape_z(z, self.dim_z, self.x.ndim) + return z - dot(self.H, self.x_prior) + + def measurement_of_state(self, x): + """ + Helper function that converts a state into a measurement. + Parameters + ---------- + x : np.array + kalman state vector + Returns + ------- + z : (dim_z, 1): array_like + measurement for this update. z can be a scalar if dim_z is 1, + otherwise it must be convertible to a column vector. + """ + + return dot(self.H, x) + + @property + def log_likelihood(self): + """ + log-likelihood of the last measurement. + """ + if self._log_likelihood is None: + self._log_likelihood = logpdf(x=self.y, cov=self.S) + return self._log_likelihood + + @property + def likelihood(self): + """ + Computed from the log-likelihood. The log-likelihood can be very + small, meaning a large negative value such as -28000. Taking the + exp() of that results in 0.0, which can break typical algorithms + which multiply by this value, so by default we always return a + number >= sys.float_info.min. + """ + if self._likelihood is None: + self._likelihood = exp(self.log_likelihood) + if self._likelihood == 0: + self._likelihood = sys.float_info.min + return self._likelihood + + @property + def mahalanobis(self): + """" + Mahalanobis distance of measurement. E.g. 3 means measurement + was 3 standard deviations away from the predicted value. + Returns + ------- + mahalanobis : float + """ + if self._mahalanobis is None: + self._mahalanobis = sqrt(float(dot(dot(self.y.T, self.SI), self.y))) + return self._mahalanobis + + @property + def alpha(self): + """ + Fading memory setting. 1.0 gives the normal Kalman filter, and + values slightly larger than 1.0 (such as 1.02) give a fading + memory effect - previous measurements have less influence on the + filter's estimates. This formulation of the Fading memory filter + (there are many) is due to Dan Simon [1]_. + """ + return self._alpha_sq**.5 + + def log_likelihood_of(self, z): + """ + log likelihood of the measurement `z`. This should only be called + after a call to update(). Calling after predict() will yield an + incorrect result.""" + + if z is None: + return log(sys.float_info.min) + return logpdf(z, dot(self.H, self.x), self.S) + + @alpha.setter + def alpha(self, value): + if not np.isscalar(value) or value < 1: + raise ValueError('alpha must be a float greater than 1') + + self._alpha_sq = value**2 + + def __repr__(self): + return '\n'.join([ + 'KalmanFilter object', + pretty_str('dim_x', self.dim_x), + pretty_str('dim_z', self.dim_z), + pretty_str('dim_u', self.dim_u), + pretty_str('x', self.x), + pretty_str('P', self.P), + pretty_str('x_prior', self.x_prior), + pretty_str('P_prior', self.P_prior), + pretty_str('x_post', self.x_post), + pretty_str('P_post', self.P_post), + pretty_str('F', self.F), + pretty_str('Q', self.Q), + pretty_str('R', self.R), + pretty_str('H', self.H), + pretty_str('K', self.K), + pretty_str('y', self.y), + pretty_str('S', self.S), + pretty_str('SI', self.SI), + pretty_str('M', self.M), + pretty_str('B', self.B), + pretty_str('z', self.z), + pretty_str('log-likelihood', self.log_likelihood), + pretty_str('likelihood', self.likelihood), + pretty_str('mahalanobis', self.mahalanobis), + pretty_str('alpha', self.alpha), + pretty_str('inv', self.inv) + ]) + + def test_matrix_dimensions(self, z=None, H=None, R=None, F=None, Q=None): + """ + Performs a series of asserts to check that the size of everything + is what it should be. This can help you debug problems in your design. + If you pass in H, R, F, Q those will be used instead of this object's + value for those matrices. + Testing `z` (the measurement) is problamatic. x is a vector, and can be + implemented as either a 1D array or as a nx1 column vector. Thus Hx + can be of different shapes. Then, if Hx is a single value, it can + be either a 1D array or 2D vector. If either is true, z can reasonably + be a scalar (either '3' or np.array('3') are scalars under this + definition), a 1D, 1 element array, or a 2D, 1 element array. You are + allowed to pass in any combination that works. + """ + + if H is None: + H = self.H + if R is None: + R = self.R + if F is None: + F = self.F + if Q is None: + Q = self.Q + x = self.x + P = self.P + + assert x.ndim == 1 or x.ndim == 2, \ + "x must have one or two dimensions, but has {}".format(x.ndim) + + if x.ndim == 1: + assert x.shape[0] == self.dim_x, \ + "Shape of x must be ({},{}), but is {}".format( + self.dim_x, 1, x.shape) + else: + assert x.shape == (self.dim_x, 1), \ + "Shape of x must be ({},{}), but is {}".format( + self.dim_x, 1, x.shape) + + assert P.shape == (self.dim_x, self.dim_x), \ + "Shape of P must be ({},{}), but is {}".format( + self.dim_x, self.dim_x, P.shape) + + assert Q.shape == (self.dim_x, self.dim_x), \ + "Shape of Q must be ({},{}), but is {}".format( + self.dim_x, self.dim_x, P.shape) + + assert F.shape == (self.dim_x, self.dim_x), \ + "Shape of F must be ({},{}), but is {}".format( + self.dim_x, self.dim_x, F.shape) + + assert np.ndim(H) == 2, \ + "Shape of H must be (dim_z, {}), but is {}".format( + P.shape[0], shape(H)) + + assert H.shape[1] == P.shape[0], \ + "Shape of H must be (dim_z, {}), but is {}".format( + P.shape[0], H.shape) + + # shape of R must be the same as HPH' + hph_shape = (H.shape[0], H.shape[0]) + r_shape = shape(R) + + if H.shape[0] == 1: + # r can be scalar, 1D, or 2D in this case + assert r_shape in [(), (1,), (1, 1)], \ + "R must be scalar or one element array, but is shaped {}".format( + r_shape) + else: + assert r_shape == hph_shape, \ + "shape of R should be {} but it is {}".format(hph_shape, r_shape) + + + if z is not None: + z_shape = shape(z) + else: + z_shape = (self.dim_z, 1) + + # H@x must have shape of z + Hx = dot(H, x) + + if z_shape == (): # scalar or np.array(scalar) + assert Hx.ndim == 1 or shape(Hx) == (1, 1), \ + "shape of z should be {}, not {} for the given H".format( + shape(Hx), z_shape) + + elif shape(Hx) == (1,): + assert z_shape[0] == 1, 'Shape of z must be {} for the given H'.format(shape(Hx)) + + else: + assert (z_shape == shape(Hx) or + (len(z_shape) == 1 and shape(Hx) == (z_shape[0], 1))), \ + "shape of z should be {}, not {} for the given H".format( + shape(Hx), z_shape) + + if np.ndim(Hx) > 1 and shape(Hx) != (1, 1): + assert shape(Hx) == z_shape, \ + 'shape of z should be {} for the given H, but it is {}'.format( + shape(Hx), z_shape) + + +def update(x, P, z, R, H=None, return_all=False): + """ + Add a new measurement (z) to the Kalman filter. If z is None, nothing + is changed. + This can handle either the multidimensional or unidimensional case. If + all parameters are floats instead of arrays the filter will still work, + and return floats for x, P as the result. + update(1, 2, 1, 1, 1) # univariate + update(x, P, 1 + Parameters + ---------- + x : numpy.array(dim_x, 1), or float + State estimate vector + P : numpy.array(dim_x, dim_x), or float + Covariance matrix + z : (dim_z, 1): array_like + measurement for this update. z can be a scalar if dim_z is 1, + otherwise it must be convertible to a column vector. + R : numpy.array(dim_z, dim_z), or float + Measurement noise matrix + H : numpy.array(dim_x, dim_x), or float, optional + Measurement function. If not provided, a value of 1 is assumed. + return_all : bool, default False + If true, y, K, S, and log_likelihood are returned, otherwise + only x and P are returned. + Returns + ------- + x : numpy.array + Posterior state estimate vector + P : numpy.array + Posterior covariance matrix + y : numpy.array or scalar + Residua. Difference between measurement and state in measurement space + K : numpy.array + Kalman gain + S : numpy.array + System uncertainty in measurement space + log_likelihood : float + log likelihood of the measurement + """ + + #pylint: disable=bare-except + + if z is None: + if return_all: + return x, P, None, None, None, None + return x, P + + if H is None: + H = np.array([1]) + + if np.isscalar(H): + H = np.array([H]) + + Hx = np.atleast_1d(dot(H, x)) + z = reshape_z(z, Hx.shape[0], x.ndim) + + # error (residual) between measurement and prediction + y = z - Hx + + # project system uncertainty into measurement space + S = dot(dot(H, P), H.T) + R + + + # map system uncertainty into kalman gain + try: + K = dot(dot(P, H.T), linalg.inv(S)) + except: + # can't invert a 1D array, annoyingly + K = dot(dot(P, H.T), 1./S) + + + # predict new x with residual scaled by the kalman gain + x = x + dot(K, y) + + # P = (I-KH)P(I-KH)' + KRK' + KH = dot(K, H) + + try: + I_KH = np.eye(KH.shape[0]) - KH + except: + I_KH = np.array([1 - KH]) + P = dot(dot(I_KH, P), I_KH.T) + dot(dot(K, R), K.T) + + + if return_all: + # compute log likelihood + log_likelihood = logpdf(z, dot(H, x), S) + return x, P, y, K, S, log_likelihood + return x, P + + +def update_steadystate(x, z, K, H=None): + """ + Add a new measurement (z) to the Kalman filter. If z is None, nothing + is changed. + Parameters + ---------- + x : numpy.array(dim_x, 1), or float + State estimate vector + z : (dim_z, 1): array_like + measurement for this update. z can be a scalar if dim_z is 1, + otherwise it must be convertible to a column vector. + K : numpy.array, or float + Kalman gain matrix + H : numpy.array(dim_x, dim_x), or float, optional + Measurement function. If not provided, a value of 1 is assumed. + Returns + ------- + x : numpy.array + Posterior state estimate vector + Examples + -------- + This can handle either the multidimensional or unidimensional case. If + all parameters are floats instead of arrays the filter will still work, + and return floats for x, P as the result. + >>> update_steadystate(1, 2, 1) # univariate + >>> update_steadystate(x, P, z, H) + """ + + + if z is None: + return x + + if H is None: + H = np.array([1]) + + if np.isscalar(H): + H = np.array([H]) + + Hx = np.atleast_1d(dot(H, x)) + z = reshape_z(z, Hx.shape[0], x.ndim) + + # error (residual) between measurement and prediction + y = z - Hx + + # estimate new x with residual scaled by the kalman gain + return x + dot(K, y) + + +def predict(x, P, F=1, Q=0, u=0, B=1, alpha=1.): + """ + Predict next state (prior) using the Kalman filter state propagation + equations. + Parameters + ---------- + x : numpy.array + State estimate vector + P : numpy.array + Covariance matrix + F : numpy.array() + State Transition matrix + Q : numpy.array, Optional + Process noise matrix + u : numpy.array, Optional, default 0. + Control vector. If non-zero, it is multiplied by B + to create the control input into the system. + B : numpy.array, optional, default 0. + Control transition matrix. + alpha : float, Optional, default=1.0 + Fading memory setting. 1.0 gives the normal Kalman filter, and + values slightly larger than 1.0 (such as 1.02) give a fading + memory effect - previous measurements have less influence on the + filter's estimates. This formulation of the Fading memory filter + (there are many) is due to Dan Simon + Returns + ------- + x : numpy.array + Prior state estimate vector + P : numpy.array + Prior covariance matrix + """ + + if np.isscalar(F): + F = np.array(F) + x = dot(F, x) + dot(B, u) + P = (alpha * alpha) * dot(dot(F, P), F.T) + Q + + return x, P + + +def predict_steadystate(x, F=1, u=0, B=1): + """ + Predict next state (prior) using the Kalman filter state propagation + equations. This steady state form only computes x, assuming that the + covariance is constant. + Parameters + ---------- + x : numpy.array + State estimate vector + P : numpy.array + Covariance matrix + F : numpy.array() + State Transition matrix + u : numpy.array, Optional, default 0. + Control vector. If non-zero, it is multiplied by B + to create the control input into the system. + B : numpy.array, optional, default 0. + Control transition matrix. + Returns + ------- + x : numpy.array + Prior state estimate vector + """ + + if np.isscalar(F): + F = np.array(F) + x = dot(F, x) + dot(B, u) + + return x + + + +def batch_filter(x, P, zs, Fs, Qs, Hs, Rs, Bs=None, us=None, + update_first=False, saver=None): + """ + Batch processes a sequences of measurements. + Parameters + ---------- + zs : list-like + list of measurements at each time step. Missing measurements must be + represented by None. + Fs : list-like + list of values to use for the state transition matrix matrix. + Qs : list-like + list of values to use for the process error + covariance. + Hs : list-like + list of values to use for the measurement matrix. + Rs : list-like + list of values to use for the measurement error + covariance. + Bs : list-like, optional + list of values to use for the control transition matrix; + a value of None in any position will cause the filter + to use `self.B` for that time step. + us : list-like, optional + list of values to use for the control input vector; + a value of None in any position will cause the filter to use + 0 for that time step. + update_first : bool, optional + controls whether the order of operations is update followed by + predict, or predict followed by update. Default is predict->update. + saver : filterpy.common.Saver, optional + filterpy.common.Saver object. If provided, saver.save() will be + called after every epoch + Returns + ------- + means : np.array((n,dim_x,1)) + array of the state for each time step after the update. Each entry + is an np.array. In other words `means[k,:]` is the state at step + `k`. + covariance : np.array((n,dim_x,dim_x)) + array of the covariances for each time step after the update. + In other words `covariance[k,:,:]` is the covariance at step `k`. + means_predictions : np.array((n,dim_x,1)) + array of the state for each time step after the predictions. Each + entry is an np.array. In other words `means[k,:]` is the state at + step `k`. + covariance_predictions : np.array((n,dim_x,dim_x)) + array of the covariances for each time step after the prediction. + In other words `covariance[k,:,:]` is the covariance at step `k`. + Examples + -------- + .. code-block:: Python + zs = [t + random.randn()*4 for t in range (40)] + Fs = [kf.F for t in range (40)] + Hs = [kf.H for t in range (40)] + (mu, cov, _, _) = kf.batch_filter(zs, Rs=R_list, Fs=Fs, Hs=Hs, Qs=None, + Bs=None, us=None, update_first=False) + (xs, Ps, Ks, Pps) = kf.rts_smoother(mu, cov, Fs=Fs, Qs=None) + """ + + n = np.size(zs, 0) + dim_x = x.shape[0] + + # mean estimates from Kalman Filter + if x.ndim == 1: + means = zeros((n, dim_x)) + means_p = zeros((n, dim_x)) + else: + means = zeros((n, dim_x, 1)) + means_p = zeros((n, dim_x, 1)) + + # state covariances from Kalman Filter + covariances = zeros((n, dim_x, dim_x)) + covariances_p = zeros((n, dim_x, dim_x)) + + if us is None: + us = [0.] * n + Bs = [0.] * n + + if update_first: + for i, (z, F, Q, H, R, B, u) in enumerate(zip(zs, Fs, Qs, Hs, Rs, Bs, us)): + + x, P = update(x, P, z, R=R, H=H) + means[i, :] = x + covariances[i, :, :] = P + + x, P = predict(x, P, u=u, B=B, F=F, Q=Q) + means_p[i, :] = x + covariances_p[i, :, :] = P + if saver is not None: + saver.save() + else: + for i, (z, F, Q, H, R, B, u) in enumerate(zip(zs, Fs, Qs, Hs, Rs, Bs, us)): + + x, P = predict(x, P, u=u, B=B, F=F, Q=Q) + means_p[i, :] = x + covariances_p[i, :, :] = P + + x, P = update(x, P, z, R=R, H=H) + means[i, :] = x + covariances[i, :, :] = P + if saver is not None: + saver.save() + + return (means, covariances, means_p, covariances_p) + + + +def rts_smoother(Xs, Ps, Fs, Qs): + """ + Runs the Rauch-Tung-Striebel Kalman smoother on a set of + means and covariances computed by a Kalman filter. The usual input + would come from the output of `KalmanFilter.batch_filter()`. + Parameters + ---------- + Xs : numpy.array + array of the means (state variable x) of the output of a Kalman + filter. + Ps : numpy.array + array of the covariances of the output of a kalman filter. + Fs : list-like collection of numpy.array + State transition matrix of the Kalman filter at each time step. + Qs : list-like collection of numpy.array, optional + Process noise of the Kalman filter at each time step. + Returns + ------- + x : numpy.ndarray + smoothed means + P : numpy.ndarray + smoothed state covariances + K : numpy.ndarray + smoother gain at each step + pP : numpy.ndarray + predicted state covariances + Examples + -------- + .. code-block:: Python + zs = [t + random.randn()*4 for t in range (40)] + (mu, cov, _, _) = kalman.batch_filter(zs) + (x, P, K, pP) = rts_smoother(mu, cov, kf.F, kf.Q) + """ + + if len(Xs) != len(Ps): + raise ValueError('length of Xs and Ps must be the same') + + n = Xs.shape[0] + dim_x = Xs.shape[1] + + # smoother gain + K = zeros((n, dim_x, dim_x)) + x, P, pP = Xs.copy(), Ps.copy(), Ps.copy() + + for k in range(n-2, -1, -1): + pP[k] = dot(dot(Fs[k], P[k]), Fs[k].T) + Qs[k] + + #pylint: disable=bad-whitespace + K[k] = dot(dot(P[k], Fs[k].T), linalg.inv(pP[k])) + x[k] += dot(K[k], x[k+1] - dot(Fs[k], x[k])) + P[k] += dot(dot(K[k], P[k+1] - pP[k]), K[k].T) + + return (x, P, K, pP) \ No newline at end of file diff --git a/trackers/hybrid_sort_tracker/kalmanfilter_score_new.py b/trackers/hybrid_sort_tracker/kalmanfilter_score_new.py new file mode 100644 index 0000000000000000000000000000000000000000..5a6fe8c0cf28b1c7ddd97f09d89e2f9bcf6aa147 --- /dev/null +++ b/trackers/hybrid_sort_tracker/kalmanfilter_score_new.py @@ -0,0 +1,1593 @@ +# -*- coding: utf-8 -*- +# pylint: disable=invalid-name, too-many-arguments, too-many-branches, +# pylint: disable=too-many-locals, too-many-instance-attributes, too-many-lines + +""" +This module implements the linear Kalman filter in both an object +oriented and procedural form. The KalmanFilter class implements +the filter by storing the various matrices in instance variables, +minimizing the amount of bookkeeping you have to do. +All Kalman filters operate with a predict->update cycle. The +predict step, implemented with the method or function predict(), +uses the state transition matrix F to predict the state in the next +time period (epoch). The state is stored as a gaussian (x, P), where +x is the state (column) vector, and P is its covariance. Covariance +matrix Q specifies the process covariance. In Bayesian terms, this +prediction is called the *prior*, which you can think of colloquially +as the estimate prior to incorporating the measurement. +The update step, implemented with the method or function `update()`, +incorporates the measurement z with covariance R, into the state +estimate (x, P). The class stores the system uncertainty in S, +the innovation (residual between prediction and measurement in +measurement space) in y, and the Kalman gain in k. The procedural +form returns these variables to you. In Bayesian terms this computes +the *posterior* - the estimate after the information from the +measurement is incorporated. +Whether you use the OO form or procedural form is up to you. If +matrices such as H, R, and F are changing each epoch, you'll probably +opt to use the procedural form. If they are unchanging, the OO +form is perhaps easier to use since you won't need to keep track +of these matrices. This is especially useful if you are implementing +banks of filters or comparing various KF designs for performance; +a trivial coding bug could lead to using the wrong sets of matrices. +This module also offers an implementation of the RTS smoother, and +other helper functions, such as log likelihood computations. +The Saver class allows you to easily save the state of the +KalmanFilter class after every update +This module expects NumPy arrays for all values that expect +arrays, although in a few cases, particularly method parameters, +it will accept types that convert to NumPy arrays, such as lists +of lists. These exceptions are documented in the method or function. +Examples +-------- +The following example constructs a constant velocity kinematic +filter, filters noisy data, and plots the results. It also demonstrates +using the Saver class to save the state of the filter at each epoch. +.. code-block:: Python + import matplotlib.pyplot as plt + import numpy as np + from filterpy.kalman import KalmanFilter + from filterpy.common import Q_discrete_white_noise, Saver + r_std, q_std = 2., 0.003 + cv = KalmanFilter(dim_x=2, dim_z=1) + cv.x = np.array([[0., 1.]]) # position, velocity + cv.F = np.array([[1, dt],[ [0, 1]]) + cv.R = np.array([[r_std^^2]]) + f.H = np.array([[1., 0.]]) + f.P = np.diag([.1^^2, .03^^2) + f.Q = Q_discrete_white_noise(2, dt, q_std**2) + saver = Saver(cv) + for z in range(100): + cv.predict() + cv.update([z + randn() * r_std]) + saver.save() # save the filter's state + saver.to_array() + plt.plot(saver.x[:, 0]) + # plot all of the priors + plt.plot(saver.x_prior[:, 0]) + # plot mahalanobis distance + plt.figure() + plt.plot(saver.mahalanobis) +This code implements the same filter using the procedural form + x = np.array([[0., 1.]]) # position, velocity + F = np.array([[1, dt],[ [0, 1]]) + R = np.array([[r_std^^2]]) + H = np.array([[1., 0.]]) + P = np.diag([.1^^2, .03^^2) + Q = Q_discrete_white_noise(2, dt, q_std**2) + for z in range(100): + x, P = predict(x, P, F=F, Q=Q) + x, P = update(x, P, z=[z + randn() * r_std], R=R, H=H) + xs.append(x[0, 0]) + plt.plot(xs) +For more examples see the test subdirectory, or refer to the +book cited below. In it I both teach Kalman filtering from basic +principles, and teach the use of this library in great detail. +FilterPy library. +http://github.com/rlabbe/filterpy +Documentation at: +https://filterpy.readthedocs.org +Supporting book at: +https://github.com/rlabbe/Kalman-and-Bayesian-Filters-in-Python +This is licensed under an MIT license. See the readme.MD file +for more information. +Copyright 2014-2018 Roger R Labbe Jr. +""" + +from __future__ import absolute_import, division + +from copy import deepcopy +from math import log, exp, sqrt +import sys +import numpy as np +from numpy import dot, zeros, eye, isscalar, shape +import numpy.linalg as linalg +from filterpy.stats import logpdf +from filterpy.common import pretty_str, reshape_z + + +class KalmanFilterNew_score_new(object): + """ Implements a Kalman filter. You are responsible for setting the + various state variables to reasonable values; the defaults will + not give you a functional filter. + For now the best documentation is my free book Kalman and Bayesian + Filters in Python [2]_. The test files in this directory also give you a + basic idea of use, albeit without much description. + In brief, you will first construct this object, specifying the size of + the state vector with dim_x and the size of the measurement vector that + you will be using with dim_z. These are mostly used to perform size checks + when you assign values to the various matrices. For example, if you + specified dim_z=2 and then try to assign a 3x3 matrix to R (the + measurement noise matrix you will get an assert exception because R + should be 2x2. (If for whatever reason you need to alter the size of + things midstream just use the underscore version of the matrices to + assign directly: your_filter._R = a_3x3_matrix.) + After construction the filter will have default matrices created for you, + but you must specify the values for each. It’s usually easiest to just + overwrite them rather than assign to each element yourself. This will be + clearer in the example below. All are of type numpy.array. + Examples + -------- + Here is a filter that tracks position and velocity using a sensor that only + reads position. + First construct the object with the required dimensionality. Here the state + (`dim_x`) has 2 coefficients (position and velocity), and the measurement + (`dim_z`) has one. In FilterPy `x` is the state, `z` is the measurement. + .. code:: + from filterpy.kalman import KalmanFilter + f = KalmanFilter (dim_x=2, dim_z=1) + Assign the initial value for the state (position and velocity). You can do this + with a two dimensional array like so: + .. code:: + f.x = np.array([[2.], # position + [0.]]) # velocity + or just use a one dimensional array, which I prefer doing. + .. code:: + f.x = np.array([2., 0.]) + Define the state transition matrix: + .. code:: + f.F = np.array([[1.,1.], + [0.,1.]]) + Define the measurement function. Here we need to convert a position-velocity + vector into just a position vector, so we use: + .. code:: + f.H = np.array([[1., 0.]]) + Define the state's covariance matrix P. + .. code:: + f.P = np.array([[1000., 0.], + [ 0., 1000.] ]) + Now assign the measurement noise. Here the dimension is 1x1, so I can + use a scalar + .. code:: + f.R = 5 + I could have done this instead: + .. code:: + f.R = np.array([[5.]]) + Note that this must be a 2 dimensional array. + Finally, I will assign the process noise. Here I will take advantage of + another FilterPy library function: + .. code:: + from filterpy.common import Q_discrete_white_noise + f.Q = Q_discrete_white_noise(dim=2, dt=0.1, var=0.13) + Now just perform the standard predict/update loop: + .. code:: + while some_condition_is_true: + z = get_sensor_reading() + f.predict() + f.update(z) + do_something_with_estimate (f.x) + **Procedural Form** + This module also contains stand alone functions to perform Kalman filtering. + Use these if you are not a fan of objects. + **Example** + .. code:: + while True: + z, R = read_sensor() + x, P = predict(x, P, F, Q) + x, P = update(x, P, z, R, H) + See my book Kalman and Bayesian Filters in Python [2]_. + You will have to set the following attributes after constructing this + object for the filter to perform properly. Please note that there are + various checks in place to ensure that you have made everything the + 'correct' size. However, it is possible to provide incorrectly sized + arrays such that the linear algebra can not perform an operation. + It can also fail silently - you can end up with matrices of a size that + allows the linear algebra to work, but are the wrong shape for the problem + you are trying to solve. + Parameters + ---------- + dim_x : int + Number of state variables for the Kalman filter. For example, if + you are tracking the position and velocity of an object in two + dimensions, dim_x would be 4. + This is used to set the default size of P, Q, and u + dim_z : int + Number of of measurement inputs. For example, if the sensor + provides you with position in (x,y), dim_z would be 2. + dim_u : int (optional) + size of the control input, if it is being used. + Default value of 0 indicates it is not used. + compute_log_likelihood : bool (default = True) + Computes log likelihood by default, but this can be a slow + computation, so if you never use it you can turn this computation + off. + Attributes + ---------- + x : numpy.array(dim_x, 1) + Current state estimate. Any call to update() or predict() updates + this variable. + P : numpy.array(dim_x, dim_x) + Current state covariance matrix. Any call to update() or predict() + updates this variable. + x_prior : numpy.array(dim_x, 1) + Prior (predicted) state estimate. The *_prior and *_post attributes + are for convenience; they store the prior and posterior of the + current epoch. Read Only. + P_prior : numpy.array(dim_x, dim_x) + Prior (predicted) state covariance matrix. Read Only. + x_post : numpy.array(dim_x, 1) + Posterior (updated) state estimate. Read Only. + P_post : numpy.array(dim_x, dim_x) + Posterior (updated) state covariance matrix. Read Only. + z : numpy.array + Last measurement used in update(). Read only. + R : numpy.array(dim_z, dim_z) + Measurement noise covariance matrix. Also known as the + observation covariance. + Q : numpy.array(dim_x, dim_x) + Process noise covariance matrix. Also known as the transition + covariance. + F : numpy.array() + State Transition matrix. Also known as `A` in some formulation. + H : numpy.array(dim_z, dim_x) + Measurement function. Also known as the observation matrix, or as `C`. + y : numpy.array + Residual of the update step. Read only. + K : numpy.array(dim_x, dim_z) + Kalman gain of the update step. Read only. + S : numpy.array + System uncertainty (P projected to measurement space). Read only. + SI : numpy.array + Inverse system uncertainty. Read only. + log_likelihood : float + log-likelihood of the last measurement. Read only. + likelihood : float + likelihood of last measurement. Read only. + Computed from the log-likelihood. The log-likelihood can be very + small, meaning a large negative value such as -28000. Taking the + exp() of that results in 0.0, which can break typical algorithms + which multiply by this value, so by default we always return a + number >= sys.float_info.min. + mahalanobis : float + mahalanobis distance of the innovation. Read only. + inv : function, default numpy.linalg.inv + If you prefer another inverse function, such as the Moore-Penrose + pseudo inverse, set it to that instead: kf.inv = np.linalg.pinv + This is only used to invert self.S. If you know it is diagonal, you + might choose to set it to filterpy.common.inv_diagonal, which is + several times faster than numpy.linalg.inv for diagonal matrices. + alpha : float + Fading memory setting. 1.0 gives the normal Kalman filter, and + values slightly larger than 1.0 (such as 1.02) give a fading + memory effect - previous measurements have less influence on the + filter's estimates. This formulation of the Fading memory filter + (there are many) is due to Dan Simon [1]_. + References + ---------- + .. [1] Dan Simon. "Optimal State Estimation." John Wiley & Sons. + p. 208-212. (2006) + .. [2] Roger Labbe. "Kalman and Bayesian Filters in Python" + https://github.com/rlabbe/Kalman-and-Bayesian-Filters-in-Python + """ + + def __init__(self, dim_x, dim_z, dim_u=0, args=None): + if dim_x < 1: + raise ValueError('dim_x must be 1 or greater') + if dim_z < 1: + raise ValueError('dim_z must be 1 or greater') + if dim_u < 0: + raise ValueError('dim_u must be 0 or greater') + + self.dim_x = dim_x + self.dim_z = dim_z + self.dim_u = dim_u + + self.x = zeros((dim_x, 1)) # state + self.P = eye(dim_x) # uncertainty covariance + self.Q = eye(dim_x) # process uncertainty + self.B = None # control transition matrix + self.F = eye(dim_x) # state transition matrix + self.H = zeros((dim_z, dim_x)) # measurement function + self.R = eye(dim_z) # measurement uncertainty + self._alpha_sq = 1. # fading memory control + self.M = np.zeros((dim_x, dim_z)) # process-measurement cross correlation + self.z = np.array([[None]*self.dim_z]).T + + # gain and residual are computed during the innovation step. We + # save them so that in case you want to inspect them for various + # purposes + self.K = np.zeros((dim_x, dim_z)) # kalman gain + self.y = zeros((dim_z, 1)) + self.S = np.zeros((dim_z, dim_z)) # system uncertainty + self.SI = np.zeros((dim_z, dim_z)) # inverse system uncertainty + + # identity matrix. Do not alter this. + self._I = np.eye(dim_x) + + # these will always be a copy of x,P after predict() is called + self.x_prior = self.x.copy() + self.P_prior = self.P.copy() + + # these will always be a copy of x,P after update() is called + self.x_post = self.x.copy() + self.P_post = self.P.copy() + + # Only computed only if requested via property + self._log_likelihood = log(sys.float_info.min) + self._likelihood = sys.float_info.min + self._mahalanobis = None + + # keep all observations + self.history_obs = [] + + self.inv = np.linalg.inv + + self.attr_saved = None + self.observed = False + self.args = args + + + def predict(self, u=None, B=None, F=None, Q=None): + """ + Predict next state (prior) using the Kalman filter state propagation + equations. + Parameters + ---------- + u : np.array, default 0 + Optional control vector. + B : np.array(dim_x, dim_u), or None + Optional control transition matrix; a value of None + will cause the filter to use `self.B`. + F : np.array(dim_x, dim_x), or None + Optional state transition matrix; a value of None + will cause the filter to use `self.F`. + Q : np.array(dim_x, dim_x), scalar, or None + Optional process noise matrix; a value of None will cause the + filter to use `self.Q`. + """ + + if B is None: + B = self.B + if F is None: + F = self.F + if Q is None: + Q = self.Q + elif isscalar(Q): + Q = eye(self.dim_x) * Q + + + # x = Fx + Bu + if B is not None and u is not None: + self.x = dot(F, self.x) + dot(B, u) + else: + self.x = dot(F, self.x) + + # P = FPF' + Q + self.P = self._alpha_sq * dot(dot(F, self.P), F.T) + Q + + # save prior + self.x_prior = self.x.copy() + self.P_prior = self.P.copy() + + + + def freeze(self): + """ + Save the parameters before non-observation forward + """ + self.attr_saved = deepcopy(self.__dict__) + + + def unfreeze(self): + if self.attr_saved is not None: + new_history = deepcopy(self.history_obs) + self.__dict__ = self.attr_saved + # self.history_obs = new_history + self.history_obs = self.history_obs[:-1] + occur = [int(d is None) for d in new_history] + indices = np.where(np.array(occur)==0)[0] + index1 = indices[-2] + index2 = indices[-1] + box1 = new_history[index1] + x1, y1, s1, c1, r1 = box1 + w1 = np.sqrt(s1 * r1) + h1 = np.sqrt(s1 / r1) + box2 = new_history[index2] + x2, y2, s2, c2, r2 = box2 + w2 = np.sqrt(s2 * r2) + h2 = np.sqrt(s2 / r2) + time_gap = index2 - index1 + dx = (x2-x1)/time_gap + dy = (y2-y1)/time_gap + dw = (w2-w1)/time_gap + dh = (h2-h1)/time_gap + dc = (c2 - c1) / time_gap + for i in range(index2 - index1): + """ + The default virtual trajectory generation is by linear + motion (constant speed hypothesis), you could modify this + part to implement your own. + """ + x = x1 + (i+1) * dx + y = y1 + (i+1) * dy + w = w1 + (i+1) * dw + h = h1 + (i+1) * dh + s = w * h + r = w / float(h) + c = c1 + (i+1) * dc + new_box = np.array([x, y, s, c, r]).reshape((5, 1)) + """ + I still use predict-update loop here to refresh the parameters, + but this can be faster by directly modifying the internal parameters + as suggested in the paper. I keep this naive but slow way for + easy read and understanding + """ + + if not i == (index2-index1-1): + self.update(new_box) + self.predict() + else: + self.update(new_box) + + + def update(self, z, R=None, H=None): + """ + Add a new measurement (z) to the Kalman filter. + If z is None, nothing is computed. However, x_post and P_post are + updated with the prior (x_prior, P_prior), and self.z is set to None. + Parameters + ---------- + z : (dim_z, 1): array_like + measurement for this update. z can be a scalar if dim_z is 1, + otherwise it must be convertible to a column vector. + If you pass in a value of H, z must be a column vector the + of the correct size. + R : np.array, scalar, or None + Optionally provide R to override the measurement noise for this + one call, otherwise self.R will be used. + H : np.array, or None + Optionally provide H to override the measurement function for this + one call, otherwise self.H will be used. + """ + + # set to None to force recompute + self._log_likelihood = None + self._likelihood = None + self._mahalanobis = None + + # append the observation + self.history_obs.append(z) + + if z is None: + if self.observed: + """ + Got no observation so freeze the current parameters for future + potential online smoothing. + """ + self.freeze() + self.observed = False + self.z = np.array([[None]*self.dim_z]).T + self.x_post = self.x.copy() + self.P_post = self.P.copy() + self.y = zeros((self.dim_z, 1)) + return + + # self.observed = True + if not self.observed: + """ + Get observation, use online smoothing to re-update parameters + """ + self.unfreeze() + self.observed = True + + if R is None: + R = self.R + elif isscalar(R): + R = eye(self.dim_z) * R + + # if self.args.use_nsa_kalman: + # if confidence > 0.6: + # R = [(1 - confidence) * self.args.nsa_kalman_interval * x for x in R] + # else: + # R = [self.args.nsa_kalman_interval_sec * x for x in R] + + if H is None: + z = reshape_z(z, self.dim_z, self.x.ndim) + H = self.H + + # y = z - Hx + # error (residual) between measurement and prediction + self.y = z - dot(H, self.x) + + # common subexpression for speed + PHT = dot(self.P, H.T) + + # S = HPH' + R + # project system uncertainty into measurement space + self.S = dot(H, PHT) + R + self.SI = self.inv(self.S) + # K = PH'inv(S) + # map system uncertainty into kalman gain + self.K = dot(PHT, self.SI) + + # x = x + Ky + # predict new x with residual scaled by the kalman gain + self.x = self.x + dot(self.K, self.y) + + # P = (I-KH)P(I-KH)' + KRK' + # This is more numerically stable + # and works for non-optimal K vs the equation + # P = (I-KH)P usually seen in the literature. + + I_KH = self._I - dot(self.K, H) + self.P = dot(dot(I_KH, self.P), I_KH.T) + dot(dot(self.K, R), self.K.T) + + # save measurement and posterior state + self.z = deepcopy(z) + self.x_post = self.x.copy() + self.P_post = self.P.copy() + + def predict_steadystate(self, u=0, B=None): + """ + Predict state (prior) using the Kalman filter state propagation + equations. Only x is updated, P is left unchanged. See + update_steadstate() for a longer explanation of when to use this + method. + Parameters + ---------- + u : np.array + Optional control vector. If non-zero, it is multiplied by B + to create the control input into the system. + B : np.array(dim_x, dim_u), or None + Optional control transition matrix; a value of None + will cause the filter to use `self.B`. + """ + + if B is None: + B = self.B + + # x = Fx + Bu + if B is not None: + self.x = dot(self.F, self.x) + dot(B, u) + else: + self.x = dot(self.F, self.x) + + # save prior + self.x_prior = self.x.copy() + self.P_prior = self.P.copy() + + def update_steadystate(self, z): + """ + Add a new measurement (z) to the Kalman filter without recomputing + the Kalman gain K, the state covariance P, or the system + uncertainty S. + You can use this for LTI systems since the Kalman gain and covariance + converge to a fixed value. Precompute these and assign them explicitly, + or run the Kalman filter using the normal predict()/update(0 cycle + until they converge. + The main advantage of this call is speed. We do significantly less + computation, notably avoiding a costly matrix inversion. + Use in conjunction with predict_steadystate(), otherwise P will grow + without bound. + Parameters + ---------- + z : (dim_z, 1): array_like + measurement for this update. z can be a scalar if dim_z is 1, + otherwise it must be convertible to a column vector. + Examples + -------- + >>> cv = kinematic_kf(dim=3, order=2) # 3D const velocity filter + >>> # let filter converge on representative data, then save k and P + >>> for i in range(100): + >>> cv.predict() + >>> cv.update([i, i, i]) + >>> saved_k = np.copy(cv.K) + >>> saved_P = np.copy(cv.P) + later on: + >>> cv = kinematic_kf(dim=3, order=2) # 3D const velocity filter + >>> cv.K = np.copy(saved_K) + >>> cv.P = np.copy(saved_P) + >>> for i in range(100): + >>> cv.predict_steadystate() + >>> cv.update_steadystate([i, i, i]) + """ + + # set to None to force recompute + self._log_likelihood = None + self._likelihood = None + self._mahalanobis = None + + if z is None: + self.z = np.array([[None]*self.dim_z]).T + self.x_post = self.x.copy() + self.P_post = self.P.copy() + self.y = zeros((self.dim_z, 1)) + return + + z = reshape_z(z, self.dim_z, self.x.ndim) + + # y = z - Hx + # error (residual) between measurement and prediction + self.y = z - dot(self.H, self.x) + + # x = x + Ky + # predict new x with residual scaled by the kalman gain + self.x = self.x + dot(self.K, self.y) + + self.z = deepcopy(z) + self.x_post = self.x.copy() + self.P_post = self.P.copy() + + # set to None to force recompute + self._log_likelihood = None + self._likelihood = None + self._mahalanobis = None + + def update_correlated(self, z, R=None, H=None): + """ Add a new measurement (z) to the Kalman filter assuming that + process noise and measurement noise are correlated as defined in + the `self.M` matrix. + A partial derivation can be found in [1] + If z is None, nothing is changed. + Parameters + ---------- + z : (dim_z, 1): array_like + measurement for this update. z can be a scalar if dim_z is 1, + otherwise it must be convertible to a column vector. + R : np.array, scalar, or None + Optionally provide R to override the measurement noise for this + one call, otherwise self.R will be used. + H : np.array, or None + Optionally provide H to override the measurement function for this + one call, otherwise self.H will be used. + References + ---------- + .. [1] Bulut, Y. (2011). Applied Kalman filter theory (Doctoral dissertation, Northeastern University). + http://people.duke.edu/~hpgavin/SystemID/References/Balut-KalmanFilter-PhD-NEU-2011.pdf + """ + + # set to None to force recompute + self._log_likelihood = None + self._likelihood = None + self._mahalanobis = None + + if z is None: + self.z = np.array([[None]*self.dim_z]).T + self.x_post = self.x.copy() + self.P_post = self.P.copy() + self.y = zeros((self.dim_z, 1)) + return + + if R is None: + R = self.R + elif isscalar(R): + R = eye(self.dim_z) * R + + # rename for readability and a tiny extra bit of speed + if H is None: + z = reshape_z(z, self.dim_z, self.x.ndim) + H = self.H + + # handle special case: if z is in form [[z]] but x is not a column + # vector dimensions will not match + if self.x.ndim == 1 and shape(z) == (1, 1): + z = z[0] + + if shape(z) == (): # is it scalar, e.g. z=3 or z=np.array(3) + z = np.asarray([z]) + + # y = z - Hx + # error (residual) between measurement and prediction + self.y = z - dot(H, self.x) + + # common subexpression for speed + PHT = dot(self.P, H.T) + + # project system uncertainty into measurement space + self.S = dot(H, PHT) + dot(H, self.M) + dot(self.M.T, H.T) + R + self.SI = self.inv(self.S) + + # K = PH'inv(S) + # map system uncertainty into kalman gain + self.K = dot(PHT + self.M, self.SI) + + # x = x + Ky + # predict new x with residual scaled by the kalman gain + self.x = self.x + dot(self.K, self.y) + self.P = self.P - dot(self.K, dot(H, self.P) + self.M.T) + + self.z = deepcopy(z) + self.x_post = self.x.copy() + self.P_post = self.P.copy() + + def batch_filter(self, zs, Fs=None, Qs=None, Hs=None, + Rs=None, Bs=None, us=None, update_first=False, + saver=None): + """ Batch processes a sequences of measurements. + Parameters + ---------- + zs : list-like + list of measurements at each time step `self.dt`. Missing + measurements must be represented by `None`. + Fs : None, list-like, default=None + optional value or list of values to use for the state transition + matrix F. + If Fs is None then self.F is used for all epochs. + Otherwise it must contain a list-like list of F's, one for + each epoch. This allows you to have varying F per epoch. + Qs : None, np.array or list-like, default=None + optional value or list of values to use for the process error + covariance Q. + If Qs is None then self.Q is used for all epochs. + Otherwise it must contain a list-like list of Q's, one for + each epoch. This allows you to have varying Q per epoch. + Hs : None, np.array or list-like, default=None + optional list of values to use for the measurement matrix H. + If Hs is None then self.H is used for all epochs. + If Hs contains a single matrix, then it is used as H for all + epochs. + Otherwise it must contain a list-like list of H's, one for + each epoch. This allows you to have varying H per epoch. + Rs : None, np.array or list-like, default=None + optional list of values to use for the measurement error + covariance R. + If Rs is None then self.R is used for all epochs. + Otherwise it must contain a list-like list of R's, one for + each epoch. This allows you to have varying R per epoch. + Bs : None, np.array or list-like, default=None + optional list of values to use for the control transition matrix B. + If Bs is None then self.B is used for all epochs. + Otherwise it must contain a list-like list of B's, one for + each epoch. This allows you to have varying B per epoch. + us : None, np.array or list-like, default=None + optional list of values to use for the control input vector; + If us is None then None is used for all epochs (equivalent to 0, + or no control input). + Otherwise it must contain a list-like list of u's, one for + each epoch. + update_first : bool, optional, default=False + controls whether the order of operations is update followed by + predict, or predict followed by update. Default is predict->update. + saver : filterpy.common.Saver, optional + filterpy.common.Saver object. If provided, saver.save() will be + called after every epoch + Returns + ------- + means : np.array((n,dim_x,1)) + array of the state for each time step after the update. Each entry + is an np.array. In other words `means[k,:]` is the state at step + `k`. + covariance : np.array((n,dim_x,dim_x)) + array of the covariances for each time step after the update. + In other words `covariance[k,:,:]` is the covariance at step `k`. + means_predictions : np.array((n,dim_x,1)) + array of the state for each time step after the predictions. Each + entry is an np.array. In other words `means[k,:]` is the state at + step `k`. + covariance_predictions : np.array((n,dim_x,dim_x)) + array of the covariances for each time step after the prediction. + In other words `covariance[k,:,:]` is the covariance at step `k`. + Examples + -------- + .. code-block:: Python + # this example demonstrates tracking a measurement where the time + # between measurement varies, as stored in dts. This requires + # that F be recomputed for each epoch. The output is then smoothed + # with an RTS smoother. + zs = [t + random.randn()*4 for t in range (40)] + Fs = [np.array([[1., dt], [0, 1]] for dt in dts] + (mu, cov, _, _) = kf.batch_filter(zs, Fs=Fs) + (xs, Ps, Ks, Pps) = kf.rts_smoother(mu, cov, Fs=Fs) + """ + + #pylint: disable=too-many-statements + n = np.size(zs, 0) + if Fs is None: + Fs = [self.F] * n + if Qs is None: + Qs = [self.Q] * n + if Hs is None: + Hs = [self.H] * n + if Rs is None: + Rs = [self.R] * n + if Bs is None: + Bs = [self.B] * n + if us is None: + us = [0] * n + + # mean estimates from Kalman Filter + if self.x.ndim == 1: + means = zeros((n, self.dim_x)) + means_p = zeros((n, self.dim_x)) + else: + means = zeros((n, self.dim_x, 1)) + means_p = zeros((n, self.dim_x, 1)) + + # state covariances from Kalman Filter + covariances = zeros((n, self.dim_x, self.dim_x)) + covariances_p = zeros((n, self.dim_x, self.dim_x)) + + if update_first: + for i, (z, F, Q, H, R, B, u) in enumerate(zip(zs, Fs, Qs, Hs, Rs, Bs, us)): + + self.update(z, R=R, H=H) + means[i, :] = self.x + covariances[i, :, :] = self.P + + self.predict(u=u, B=B, F=F, Q=Q) + means_p[i, :] = self.x + covariances_p[i, :, :] = self.P + + if saver is not None: + saver.save() + else: + for i, (z, F, Q, H, R, B, u) in enumerate(zip(zs, Fs, Qs, Hs, Rs, Bs, us)): + + self.predict(u=u, B=B, F=F, Q=Q) + means_p[i, :] = self.x + covariances_p[i, :, :] = self.P + + self.update(z, R=R, H=H) + means[i, :] = self.x + covariances[i, :, :] = self.P + + if saver is not None: + saver.save() + + return (means, covariances, means_p, covariances_p) + + def rts_smoother(self, Xs, Ps, Fs=None, Qs=None, inv=np.linalg.inv): + """ + Runs the Rauch-Tung-Striebel Kalman smoother on a set of + means and covariances computed by a Kalman filter. The usual input + would come from the output of `KalmanFilter.batch_filter()`. + Parameters + ---------- + Xs : numpy.array + array of the means (state variable x) of the output of a Kalman + filter. + Ps : numpy.array + array of the covariances of the output of a kalman filter. + Fs : list-like collection of numpy.array, optional + State transition matrix of the Kalman filter at each time step. + Optional, if not provided the filter's self.F will be used + Qs : list-like collection of numpy.array, optional + Process noise of the Kalman filter at each time step. Optional, + if not provided the filter's self.Q will be used + inv : function, default numpy.linalg.inv + If you prefer another inverse function, such as the Moore-Penrose + pseudo inverse, set it to that instead: kf.inv = np.linalg.pinv + Returns + ------- + x : numpy.ndarray + smoothed means + P : numpy.ndarray + smoothed state covariances + K : numpy.ndarray + smoother gain at each step + Pp : numpy.ndarray + Predicted state covariances + Examples + -------- + .. code-block:: Python + zs = [t + random.randn()*4 for t in range (40)] + (mu, cov, _, _) = kalman.batch_filter(zs) + (x, P, K, Pp) = rts_smoother(mu, cov, kf.F, kf.Q) + """ + + if len(Xs) != len(Ps): + raise ValueError('length of Xs and Ps must be the same') + + n = Xs.shape[0] + dim_x = Xs.shape[1] + + if Fs is None: + Fs = [self.F] * n + if Qs is None: + Qs = [self.Q] * n + + # smoother gain + K = zeros((n, dim_x, dim_x)) + + x, P, Pp = Xs.copy(), Ps.copy(), Ps.copy() + for k in range(n-2, -1, -1): + Pp[k] = dot(dot(Fs[k+1], P[k]), Fs[k+1].T) + Qs[k+1] + + #pylint: disable=bad-whitespace + K[k] = dot(dot(P[k], Fs[k+1].T), inv(Pp[k])) + x[k] += dot(K[k], x[k+1] - dot(Fs[k+1], x[k])) + P[k] += dot(dot(K[k], P[k+1] - Pp[k]), K[k].T) + + return (x, P, K, Pp) + + def get_prediction(self, u=None, B=None, F=None, Q=None): + """ + Predict next state (prior) using the Kalman filter state propagation + equations and returns it without modifying the object. + Parameters + ---------- + u : np.array, default 0 + Optional control vector. + B : np.array(dim_x, dim_u), or None + Optional control transition matrix; a value of None + will cause the filter to use `self.B`. + F : np.array(dim_x, dim_x), or None + Optional state transition matrix; a value of None + will cause the filter to use `self.F`. + Q : np.array(dim_x, dim_x), scalar, or None + Optional process noise matrix; a value of None will cause the + filter to use `self.Q`. + Returns + ------- + (x, P) : tuple + State vector and covariance array of the prediction. + """ + + if B is None: + B = self.B + if F is None: + F = self.F + if Q is None: + Q = self.Q + elif isscalar(Q): + Q = eye(self.dim_x) * Q + + # x = Fx + Bu + if B is not None and u is not None: + x = dot(F, self.x) + dot(B, u) + else: + x = dot(F, self.x) + + # P = FPF' + Q + P = self._alpha_sq * dot(dot(F, self.P), F.T) + Q + + return x, P + + def get_update(self, z=None): + """ + Computes the new estimate based on measurement `z` and returns it + without altering the state of the filter. + Parameters + ---------- + z : (dim_z, 1): array_like + measurement for this update. z can be a scalar if dim_z is 1, + otherwise it must be convertible to a column vector. + Returns + ------- + (x, P) : tuple + State vector and covariance array of the update. + """ + + if z is None: + return self.x, self.P + z = reshape_z(z, self.dim_z, self.x.ndim) + + R = self.R + H = self.H + P = self.P + x = self.x + + # error (residual) between measurement and prediction + y = z - dot(H, x) + + # common subexpression for speed + PHT = dot(P, H.T) + + # project system uncertainty into measurement space + S = dot(H, PHT) + R + + # map system uncertainty into kalman gain + K = dot(PHT, self.inv(S)) + + # predict new x with residual scaled by the kalman gain + x = x + dot(K, y) + + # P = (I-KH)P(I-KH)' + KRK' + I_KH = self._I - dot(K, H) + P = dot(dot(I_KH, P), I_KH.T) + dot(dot(K, R), K.T) + + return x, P + + def residual_of(self, z): + """ + Returns the residual for the given measurement (z). Does not alter + the state of the filter. + """ + z = reshape_z(z, self.dim_z, self.x.ndim) + return z - dot(self.H, self.x_prior) + + def measurement_of_state(self, x): + """ + Helper function that converts a state into a measurement. + Parameters + ---------- + x : np.array + kalman state vector + Returns + ------- + z : (dim_z, 1): array_like + measurement for this update. z can be a scalar if dim_z is 1, + otherwise it must be convertible to a column vector. + """ + + return dot(self.H, x) + + @property + def log_likelihood(self): + """ + log-likelihood of the last measurement. + """ + if self._log_likelihood is None: + self._log_likelihood = logpdf(x=self.y, cov=self.S) + return self._log_likelihood + + @property + def likelihood(self): + """ + Computed from the log-likelihood. The log-likelihood can be very + small, meaning a large negative value such as -28000. Taking the + exp() of that results in 0.0, which can break typical algorithms + which multiply by this value, so by default we always return a + number >= sys.float_info.min. + """ + if self._likelihood is None: + self._likelihood = exp(self.log_likelihood) + if self._likelihood == 0: + self._likelihood = sys.float_info.min + return self._likelihood + + @property + def mahalanobis(self): + """" + Mahalanobis distance of measurement. E.g. 3 means measurement + was 3 standard deviations away from the predicted value. + Returns + ------- + mahalanobis : float + """ + if self._mahalanobis is None: + self._mahalanobis = sqrt(float(dot(dot(self.y.T, self.SI), self.y))) + return self._mahalanobis + + @property + def alpha(self): + """ + Fading memory setting. 1.0 gives the normal Kalman filter, and + values slightly larger than 1.0 (such as 1.02) give a fading + memory effect - previous measurements have less influence on the + filter's estimates. This formulation of the Fading memory filter + (there are many) is due to Dan Simon [1]_. + """ + return self._alpha_sq**.5 + + def log_likelihood_of(self, z): + """ + log likelihood of the measurement `z`. This should only be called + after a call to update(). Calling after predict() will yield an + incorrect result.""" + + if z is None: + return log(sys.float_info.min) + return logpdf(z, dot(self.H, self.x), self.S) + + @alpha.setter + def alpha(self, value): + if not np.isscalar(value) or value < 1: + raise ValueError('alpha must be a float greater than 1') + + self._alpha_sq = value**2 + + def __repr__(self): + return '\n'.join([ + 'KalmanFilter object', + pretty_str('dim_x', self.dim_x), + pretty_str('dim_z', self.dim_z), + pretty_str('dim_u', self.dim_u), + pretty_str('x', self.x), + pretty_str('P', self.P), + pretty_str('x_prior', self.x_prior), + pretty_str('P_prior', self.P_prior), + pretty_str('x_post', self.x_post), + pretty_str('P_post', self.P_post), + pretty_str('F', self.F), + pretty_str('Q', self.Q), + pretty_str('R', self.R), + pretty_str('H', self.H), + pretty_str('K', self.K), + pretty_str('y', self.y), + pretty_str('S', self.S), + pretty_str('SI', self.SI), + pretty_str('M', self.M), + pretty_str('B', self.B), + pretty_str('z', self.z), + pretty_str('log-likelihood', self.log_likelihood), + pretty_str('likelihood', self.likelihood), + pretty_str('mahalanobis', self.mahalanobis), + pretty_str('alpha', self.alpha), + pretty_str('inv', self.inv) + ]) + + def test_matrix_dimensions(self, z=None, H=None, R=None, F=None, Q=None): + """ + Performs a series of asserts to check that the size of everything + is what it should be. This can help you debug problems in your design. + If you pass in H, R, F, Q those will be used instead of this object's + value for those matrices. + Testing `z` (the measurement) is problamatic. x is a vector, and can be + implemented as either a 1D array or as a nx1 column vector. Thus Hx + can be of different shapes. Then, if Hx is a single value, it can + be either a 1D array or 2D vector. If either is true, z can reasonably + be a scalar (either '3' or np.array('3') are scalars under this + definition), a 1D, 1 element array, or a 2D, 1 element array. You are + allowed to pass in any combination that works. + """ + + if H is None: + H = self.H + if R is None: + R = self.R + if F is None: + F = self.F + if Q is None: + Q = self.Q + x = self.x + P = self.P + + assert x.ndim == 1 or x.ndim == 2, \ + "x must have one or two dimensions, but has {}".format(x.ndim) + + if x.ndim == 1: + assert x.shape[0] == self.dim_x, \ + "Shape of x must be ({},{}), but is {}".format( + self.dim_x, 1, x.shape) + else: + assert x.shape == (self.dim_x, 1), \ + "Shape of x must be ({},{}), but is {}".format( + self.dim_x, 1, x.shape) + + assert P.shape == (self.dim_x, self.dim_x), \ + "Shape of P must be ({},{}), but is {}".format( + self.dim_x, self.dim_x, P.shape) + + assert Q.shape == (self.dim_x, self.dim_x), \ + "Shape of Q must be ({},{}), but is {}".format( + self.dim_x, self.dim_x, P.shape) + + assert F.shape == (self.dim_x, self.dim_x), \ + "Shape of F must be ({},{}), but is {}".format( + self.dim_x, self.dim_x, F.shape) + + assert np.ndim(H) == 2, \ + "Shape of H must be (dim_z, {}), but is {}".format( + P.shape[0], shape(H)) + + assert H.shape[1] == P.shape[0], \ + "Shape of H must be (dim_z, {}), but is {}".format( + P.shape[0], H.shape) + + # shape of R must be the same as HPH' + hph_shape = (H.shape[0], H.shape[0]) + r_shape = shape(R) + + if H.shape[0] == 1: + # r can be scalar, 1D, or 2D in this case + assert r_shape in [(), (1,), (1, 1)], \ + "R must be scalar or one element array, but is shaped {}".format( + r_shape) + else: + assert r_shape == hph_shape, \ + "shape of R should be {} but it is {}".format(hph_shape, r_shape) + + + if z is not None: + z_shape = shape(z) + else: + z_shape = (self.dim_z, 1) + + # H@x must have shape of z + Hx = dot(H, x) + + if z_shape == (): # scalar or np.array(scalar) + assert Hx.ndim == 1 or shape(Hx) == (1, 1), \ + "shape of z should be {}, not {} for the given H".format( + shape(Hx), z_shape) + + elif shape(Hx) == (1,): + assert z_shape[0] == 1, 'Shape of z must be {} for the given H'.format(shape(Hx)) + + else: + assert (z_shape == shape(Hx) or + (len(z_shape) == 1 and shape(Hx) == (z_shape[0], 1))), \ + "shape of z should be {}, not {} for the given H".format( + shape(Hx), z_shape) + + if np.ndim(Hx) > 1 and shape(Hx) != (1, 1): + assert shape(Hx) == z_shape, \ + 'shape of z should be {} for the given H, but it is {}'.format( + shape(Hx), z_shape) + + +def update(x, P, z, R, H=None, return_all=False): + """ + Add a new measurement (z) to the Kalman filter. If z is None, nothing + is changed. + This can handle either the multidimensional or unidimensional case. If + all parameters are floats instead of arrays the filter will still work, + and return floats for x, P as the result. + update(1, 2, 1, 1, 1) # univariate + update(x, P, 1 + Parameters + ---------- + x : numpy.array(dim_x, 1), or float + State estimate vector + P : numpy.array(dim_x, dim_x), or float + Covariance matrix + z : (dim_z, 1): array_like + measurement for this update. z can be a scalar if dim_z is 1, + otherwise it must be convertible to a column vector. + R : numpy.array(dim_z, dim_z), or float + Measurement noise matrix + H : numpy.array(dim_x, dim_x), or float, optional + Measurement function. If not provided, a value of 1 is assumed. + return_all : bool, default False + If true, y, K, S, and log_likelihood are returned, otherwise + only x and P are returned. + Returns + ------- + x : numpy.array + Posterior state estimate vector + P : numpy.array + Posterior covariance matrix + y : numpy.array or scalar + Residua. Difference between measurement and state in measurement space + K : numpy.array + Kalman gain + S : numpy.array + System uncertainty in measurement space + log_likelihood : float + log likelihood of the measurement + """ + + #pylint: disable=bare-except + + if z is None: + if return_all: + return x, P, None, None, None, None + return x, P + + if H is None: + H = np.array([1]) + + if np.isscalar(H): + H = np.array([H]) + + Hx = np.atleast_1d(dot(H, x)) + z = reshape_z(z, Hx.shape[0], x.ndim) + + # error (residual) between measurement and prediction + y = z - Hx + + # project system uncertainty into measurement space + S = dot(dot(H, P), H.T) + R + + + # map system uncertainty into kalman gain + try: + K = dot(dot(P, H.T), linalg.inv(S)) + except: + # can't invert a 1D array, annoyingly + K = dot(dot(P, H.T), 1./S) + + + # predict new x with residual scaled by the kalman gain + x = x + dot(K, y) + + # P = (I-KH)P(I-KH)' + KRK' + KH = dot(K, H) + + try: + I_KH = np.eye(KH.shape[0]) - KH + except: + I_KH = np.array([1 - KH]) + P = dot(dot(I_KH, P), I_KH.T) + dot(dot(K, R), K.T) + + + if return_all: + # compute log likelihood + log_likelihood = logpdf(z, dot(H, x), S) + return x, P, y, K, S, log_likelihood + return x, P + + +def update_steadystate(x, z, K, H=None): + """ + Add a new measurement (z) to the Kalman filter. If z is None, nothing + is changed. + Parameters + ---------- + x : numpy.array(dim_x, 1), or float + State estimate vector + z : (dim_z, 1): array_like + measurement for this update. z can be a scalar if dim_z is 1, + otherwise it must be convertible to a column vector. + K : numpy.array, or float + Kalman gain matrix + H : numpy.array(dim_x, dim_x), or float, optional + Measurement function. If not provided, a value of 1 is assumed. + Returns + ------- + x : numpy.array + Posterior state estimate vector + Examples + -------- + This can handle either the multidimensional or unidimensional case. If + all parameters are floats instead of arrays the filter will still work, + and return floats for x, P as the result. + >>> update_steadystate(1, 2, 1) # univariate + >>> update_steadystate(x, P, z, H) + """ + + + if z is None: + return x + + if H is None: + H = np.array([1]) + + if np.isscalar(H): + H = np.array([H]) + + Hx = np.atleast_1d(dot(H, x)) + z = reshape_z(z, Hx.shape[0], x.ndim) + + # error (residual) between measurement and prediction + y = z - Hx + + # estimate new x with residual scaled by the kalman gain + return x + dot(K, y) + + +def predict(x, P, F=1, Q=0, u=0, B=1, alpha=1.): + """ + Predict next state (prior) using the Kalman filter state propagation + equations. + Parameters + ---------- + x : numpy.array + State estimate vector + P : numpy.array + Covariance matrix + F : numpy.array() + State Transition matrix + Q : numpy.array, Optional + Process noise matrix + u : numpy.array, Optional, default 0. + Control vector. If non-zero, it is multiplied by B + to create the control input into the system. + B : numpy.array, optional, default 0. + Control transition matrix. + alpha : float, Optional, default=1.0 + Fading memory setting. 1.0 gives the normal Kalman filter, and + values slightly larger than 1.0 (such as 1.02) give a fading + memory effect - previous measurements have less influence on the + filter's estimates. This formulation of the Fading memory filter + (there are many) is due to Dan Simon + Returns + ------- + x : numpy.array + Prior state estimate vector + P : numpy.array + Prior covariance matrix + """ + + if np.isscalar(F): + F = np.array(F) + x = dot(F, x) + dot(B, u) + P = (alpha * alpha) * dot(dot(F, P), F.T) + Q + + return x, P + + +def predict_steadystate(x, F=1, u=0, B=1): + """ + Predict next state (prior) using the Kalman filter state propagation + equations. This steady state form only computes x, assuming that the + covariance is constant. + Parameters + ---------- + x : numpy.array + State estimate vector + P : numpy.array + Covariance matrix + F : numpy.array() + State Transition matrix + u : numpy.array, Optional, default 0. + Control vector. If non-zero, it is multiplied by B + to create the control input into the system. + B : numpy.array, optional, default 0. + Control transition matrix. + Returns + ------- + x : numpy.array + Prior state estimate vector + """ + + if np.isscalar(F): + F = np.array(F) + x = dot(F, x) + dot(B, u) + + return x + + + +def batch_filter(x, P, zs, Fs, Qs, Hs, Rs, Bs=None, us=None, + update_first=False, saver=None): + """ + Batch processes a sequences of measurements. + Parameters + ---------- + zs : list-like + list of measurements at each time step. Missing measurements must be + represented by None. + Fs : list-like + list of values to use for the state transition matrix matrix. + Qs : list-like + list of values to use for the process error + covariance. + Hs : list-like + list of values to use for the measurement matrix. + Rs : list-like + list of values to use for the measurement error + covariance. + Bs : list-like, optional + list of values to use for the control transition matrix; + a value of None in any position will cause the filter + to use `self.B` for that time step. + us : list-like, optional + list of values to use for the control input vector; + a value of None in any position will cause the filter to use + 0 for that time step. + update_first : bool, optional + controls whether the order of operations is update followed by + predict, or predict followed by update. Default is predict->update. + saver : filterpy.common.Saver, optional + filterpy.common.Saver object. If provided, saver.save() will be + called after every epoch + Returns + ------- + means : np.array((n,dim_x,1)) + array of the state for each time step after the update. Each entry + is an np.array. In other words `means[k,:]` is the state at step + `k`. + covariance : np.array((n,dim_x,dim_x)) + array of the covariances for each time step after the update. + In other words `covariance[k,:,:]` is the covariance at step `k`. + means_predictions : np.array((n,dim_x,1)) + array of the state for each time step after the predictions. Each + entry is an np.array. In other words `means[k,:]` is the state at + step `k`. + covariance_predictions : np.array((n,dim_x,dim_x)) + array of the covariances for each time step after the prediction. + In other words `covariance[k,:,:]` is the covariance at step `k`. + Examples + -------- + .. code-block:: Python + zs = [t + random.randn()*4 for t in range (40)] + Fs = [kf.F for t in range (40)] + Hs = [kf.H for t in range (40)] + (mu, cov, _, _) = kf.batch_filter(zs, Rs=R_list, Fs=Fs, Hs=Hs, Qs=None, + Bs=None, us=None, update_first=False) + (xs, Ps, Ks, Pps) = kf.rts_smoother(mu, cov, Fs=Fs, Qs=None) + """ + + n = np.size(zs, 0) + dim_x = x.shape[0] + + # mean estimates from Kalman Filter + if x.ndim == 1: + means = zeros((n, dim_x)) + means_p = zeros((n, dim_x)) + else: + means = zeros((n, dim_x, 1)) + means_p = zeros((n, dim_x, 1)) + + # state covariances from Kalman Filter + covariances = zeros((n, dim_x, dim_x)) + covariances_p = zeros((n, dim_x, dim_x)) + + if us is None: + us = [0.] * n + Bs = [0.] * n + + if update_first: + for i, (z, F, Q, H, R, B, u) in enumerate(zip(zs, Fs, Qs, Hs, Rs, Bs, us)): + + x, P = update(x, P, z, R=R, H=H) + means[i, :] = x + covariances[i, :, :] = P + + x, P = predict(x, P, u=u, B=B, F=F, Q=Q) + means_p[i, :] = x + covariances_p[i, :, :] = P + if saver is not None: + saver.save() + else: + for i, (z, F, Q, H, R, B, u) in enumerate(zip(zs, Fs, Qs, Hs, Rs, Bs, us)): + + x, P = predict(x, P, u=u, B=B, F=F, Q=Q) + means_p[i, :] = x + covariances_p[i, :, :] = P + + x, P = update(x, P, z, R=R, H=H) + means[i, :] = x + covariances[i, :, :] = P + if saver is not None: + saver.save() + + return (means, covariances, means_p, covariances_p) + + + +def rts_smoother(Xs, Ps, Fs, Qs): + """ + Runs the Rauch-Tung-Striebel Kalman smoother on a set of + means and covariances computed by a Kalman filter. The usual input + would come from the output of `KalmanFilter.batch_filter()`. + Parameters + ---------- + Xs : numpy.array + array of the means (state variable x) of the output of a Kalman + filter. + Ps : numpy.array + array of the covariances of the output of a kalman filter. + Fs : list-like collection of numpy.array + State transition matrix of the Kalman filter at each time step. + Qs : list-like collection of numpy.array, optional + Process noise of the Kalman filter at each time step. + Returns + ------- + x : numpy.ndarray + smoothed means + P : numpy.ndarray + smoothed state covariances + K : numpy.ndarray + smoother gain at each step + pP : numpy.ndarray + predicted state covariances + Examples + -------- + .. code-block:: Python + zs = [t + random.randn()*4 for t in range (40)] + (mu, cov, _, _) = kalman.batch_filter(zs) + (x, P, K, pP) = rts_smoother(mu, cov, kf.F, kf.Q) + """ + + if len(Xs) != len(Ps): + raise ValueError('length of Xs and Ps must be the same') + + n = Xs.shape[0] + dim_x = Xs.shape[1] + + # smoother gain + K = zeros((n, dim_x, dim_x)) + x, P, pP = Xs.copy(), Ps.copy(), Ps.copy() + + for k in range(n-2, -1, -1): + pP[k] = dot(dot(Fs[k], P[k]), Fs[k].T) + Qs[k] + + #pylint: disable=bad-whitespace + K[k] = dot(dot(P[k], Fs[k].T), linalg.inv(pP[k])) + x[k] += dot(K[k], x[k+1] - dot(Fs[k], x[k])) + P[k] += dot(dot(K[k], P[k+1] - pP[k]), K[k].T) + + return (x, P, K, pP) \ No newline at end of file diff --git a/trackers/hybrid_sort_tracker/new_kalmanfilter.py b/trackers/hybrid_sort_tracker/new_kalmanfilter.py new file mode 100644 index 0000000000000000000000000000000000000000..d3c3eeb4bb68bd48593837804d6a2dc8de415227 --- /dev/null +++ b/trackers/hybrid_sort_tracker/new_kalmanfilter.py @@ -0,0 +1,1583 @@ +# -*- coding: utf-8 -*- +# pylint: disable=invalid-name, too-many-arguments, too-many-branches, +# pylint: disable=too-many-locals, too-many-instance-attributes, too-many-lines + +""" +This module implements the linear Kalman filter in both an object +oriented and procedural form. The KalmanFilter class implements +the filter by storing the various matrices in instance variables, +minimizing the amount of bookkeeping you have to do. +All Kalman filters operate with a predict->update cycle. The +predict step, implemented with the method or function predict(), +uses the state transition matrix F to predict the state in the next +time period (epoch). The state is stored as a gaussian (x, P), where +x is the state (column) vector, and P is its covariance. Covariance +matrix Q specifies the process covariance. In Bayesian terms, this +prediction is called the *prior*, which you can think of colloquially +as the estimate prior to incorporating the measurement. +The update step, implemented with the method or function `update()`, +incorporates the measurement z with covariance R, into the state +estimate (x, P). The class stores the system uncertainty in S, +the innovation (residual between prediction and measurement in +measurement space) in y, and the Kalman gain in k. The procedural +form returns these variables to you. In Bayesian terms this computes +the *posterior* - the estimate after the information from the +measurement is incorporated. +Whether you use the OO form or procedural form is up to you. If +matrices such as H, R, and F are changing each epoch, you'll probably +opt to use the procedural form. If they are unchanging, the OO +form is perhaps easier to use since you won't need to keep track +of these matrices. This is especially useful if you are implementing +banks of filters or comparing various KF designs for performance; +a trivial coding bug could lead to using the wrong sets of matrices. +This module also offers an implementation of the RTS smoother, and +other helper functions, such as log likelihood computations. +The Saver class allows you to easily save the state of the +KalmanFilter class after every update +This module expects NumPy arrays for all values that expect +arrays, although in a few cases, particularly method parameters, +it will accept types that convert to NumPy arrays, such as lists +of lists. These exceptions are documented in the method or function. +Examples +-------- +The following example constructs a constant velocity kinematic +filter, filters noisy data, and plots the results. It also demonstrates +using the Saver class to save the state of the filter at each epoch. +.. code-block:: Python + import matplotlib.pyplot as plt + import numpy as np + from filterpy.kalman import KalmanFilter + from filterpy.common import Q_discrete_white_noise, Saver + r_std, q_std = 2., 0.003 + cv = KalmanFilter(dim_x=2, dim_z=1) + cv.x = np.array([[0., 1.]]) # position, velocity + cv.F = np.array([[1, dt],[ [0, 1]]) + cv.R = np.array([[r_std^^2]]) + f.H = np.array([[1., 0.]]) + f.P = np.diag([.1^^2, .03^^2) + f.Q = Q_discrete_white_noise(2, dt, q_std**2) + saver = Saver(cv) + for z in range(100): + cv.predict() + cv.update([z + randn() * r_std]) + saver.save() # save the filter's state + saver.to_array() + plt.plot(saver.x[:, 0]) + # plot all of the priors + plt.plot(saver.x_prior[:, 0]) + # plot mahalanobis distance + plt.figure() + plt.plot(saver.mahalanobis) +This code implements the same filter using the procedural form + x = np.array([[0., 1.]]) # position, velocity + F = np.array([[1, dt],[ [0, 1]]) + R = np.array([[r_std^^2]]) + H = np.array([[1., 0.]]) + P = np.diag([.1^^2, .03^^2) + Q = Q_discrete_white_noise(2, dt, q_std**2) + for z in range(100): + x, P = predict(x, P, F=F, Q=Q) + x, P = update(x, P, z=[z + randn() * r_std], R=R, H=H) + xs.append(x[0, 0]) + plt.plot(xs) +For more examples see the test subdirectory, or refer to the +book cited below. In it I both teach Kalman filtering from basic +principles, and teach the use of this library in great detail. +FilterPy library. +http://github.com/rlabbe/filterpy +Documentation at: +https://filterpy.readthedocs.org +Supporting book at: +https://github.com/rlabbe/Kalman-and-Bayesian-Filters-in-Python +This is licensed under an MIT license. See the readme.MD file +for more information. +Copyright 2014-2018 Roger R Labbe Jr. +""" + +from __future__ import absolute_import, division + +from copy import deepcopy +from math import log, exp, sqrt +import sys +import numpy as np +from numpy import dot, zeros, eye, isscalar, shape +import numpy.linalg as linalg +from filterpy.stats import logpdf +from filterpy.common import pretty_str, reshape_z + + +class KalmanFilterNew(object): + """ Implements a Kalman filter. You are responsible for setting the + various state variables to reasonable values; the defaults will + not give you a functional filter. + For now the best documentation is my free book Kalman and Bayesian + Filters in Python [2]_. The test files in this directory also give you a + basic idea of use, albeit without much description. + In brief, you will first construct this object, specifying the size of + the state vector with dim_x and the size of the measurement vector that + you will be using with dim_z. These are mostly used to perform size checks + when you assign values to the various matrices. For example, if you + specified dim_z=2 and then try to assign a 3x3 matrix to R (the + measurement noise matrix you will get an assert exception because R + should be 2x2. (If for whatever reason you need to alter the size of + things midstream just use the underscore version of the matrices to + assign directly: your_filter._R = a_3x3_matrix.) + After construction the filter will have default matrices created for you, + but you must specify the values for each. It’s usually easiest to just + overwrite them rather than assign to each element yourself. This will be + clearer in the example below. All are of type numpy.array. + Examples + -------- + Here is a filter that tracks position and velocity using a sensor that only + reads position. + First construct the object with the required dimensionality. Here the state + (`dim_x`) has 2 coefficients (position and velocity), and the measurement + (`dim_z`) has one. In FilterPy `x` is the state, `z` is the measurement. + .. code:: + from filterpy.kalman import KalmanFilter + f = KalmanFilter (dim_x=2, dim_z=1) + Assign the initial value for the state (position and velocity). You can do this + with a two dimensional array like so: + .. code:: + f.x = np.array([[2.], # position + [0.]]) # velocity + or just use a one dimensional array, which I prefer doing. + .. code:: + f.x = np.array([2., 0.]) + Define the state transition matrix: + .. code:: + f.F = np.array([[1.,1.], + [0.,1.]]) + Define the measurement function. Here we need to convert a position-velocity + vector into just a position vector, so we use: + .. code:: + f.H = np.array([[1., 0.]]) + Define the state's covariance matrix P. + .. code:: + f.P = np.array([[1000., 0.], + [ 0., 1000.] ]) + Now assign the measurement noise. Here the dimension is 1x1, so I can + use a scalar + .. code:: + f.R = 5 + I could have done this instead: + .. code:: + f.R = np.array([[5.]]) + Note that this must be a 2 dimensional array. + Finally, I will assign the process noise. Here I will take advantage of + another FilterPy library function: + .. code:: + from filterpy.common import Q_discrete_white_noise + f.Q = Q_discrete_white_noise(dim=2, dt=0.1, var=0.13) + Now just perform the standard predict/update loop: + .. code:: + while some_condition_is_true: + z = get_sensor_reading() + f.predict() + f.update(z) + do_something_with_estimate (f.x) + **Procedural Form** + This module also contains stand alone functions to perform Kalman filtering. + Use these if you are not a fan of objects. + **Example** + .. code:: + while True: + z, R = read_sensor() + x, P = predict(x, P, F, Q) + x, P = update(x, P, z, R, H) + See my book Kalman and Bayesian Filters in Python [2]_. + You will have to set the following attributes after constructing this + object for the filter to perform properly. Please note that there are + various checks in place to ensure that you have made everything the + 'correct' size. However, it is possible to provide incorrectly sized + arrays such that the linear algebra can not perform an operation. + It can also fail silently - you can end up with matrices of a size that + allows the linear algebra to work, but are the wrong shape for the problem + you are trying to solve. + Parameters + ---------- + dim_x : int + Number of state variables for the Kalman filter. For example, if + you are tracking the position and velocity of an object in two + dimensions, dim_x would be 4. + This is used to set the default size of P, Q, and u + dim_z : int + Number of of measurement inputs. For example, if the sensor + provides you with position in (x,y), dim_z would be 2. + dim_u : int (optional) + size of the control input, if it is being used. + Default value of 0 indicates it is not used. + compute_log_likelihood : bool (default = True) + Computes log likelihood by default, but this can be a slow + computation, so if you never use it you can turn this computation + off. + Attributes + ---------- + x : numpy.array(dim_x, 1) + Current state estimate. Any call to update() or predict() updates + this variable. + P : numpy.array(dim_x, dim_x) + Current state covariance matrix. Any call to update() or predict() + updates this variable. + x_prior : numpy.array(dim_x, 1) + Prior (predicted) state estimate. The *_prior and *_post attributes + are for convenience; they store the prior and posterior of the + current epoch. Read Only. + P_prior : numpy.array(dim_x, dim_x) + Prior (predicted) state covariance matrix. Read Only. + x_post : numpy.array(dim_x, 1) + Posterior (updated) state estimate. Read Only. + P_post : numpy.array(dim_x, dim_x) + Posterior (updated) state covariance matrix. Read Only. + z : numpy.array + Last measurement used in update(). Read only. + R : numpy.array(dim_z, dim_z) + Measurement noise covariance matrix. Also known as the + observation covariance. + Q : numpy.array(dim_x, dim_x) + Process noise covariance matrix. Also known as the transition + covariance. + F : numpy.array() + State Transition matrix. Also known as `A` in some formulation. + H : numpy.array(dim_z, dim_x) + Measurement function. Also known as the observation matrix, or as `C`. + y : numpy.array + Residual of the update step. Read only. + K : numpy.array(dim_x, dim_z) + Kalman gain of the update step. Read only. + S : numpy.array + System uncertainty (P projected to measurement space). Read only. + SI : numpy.array + Inverse system uncertainty. Read only. + log_likelihood : float + log-likelihood of the last measurement. Read only. + likelihood : float + likelihood of last measurement. Read only. + Computed from the log-likelihood. The log-likelihood can be very + small, meaning a large negative value such as -28000. Taking the + exp() of that results in 0.0, which can break typical algorithms + which multiply by this value, so by default we always return a + number >= sys.float_info.min. + mahalanobis : float + mahalanobis distance of the innovation. Read only. + inv : function, default numpy.linalg.inv + If you prefer another inverse function, such as the Moore-Penrose + pseudo inverse, set it to that instead: kf.inv = np.linalg.pinv + This is only used to invert self.S. If you know it is diagonal, you + might choose to set it to filterpy.common.inv_diagonal, which is + several times faster than numpy.linalg.inv for diagonal matrices. + alpha : float + Fading memory setting. 1.0 gives the normal Kalman filter, and + values slightly larger than 1.0 (such as 1.02) give a fading + memory effect - previous measurements have less influence on the + filter's estimates. This formulation of the Fading memory filter + (there are many) is due to Dan Simon [1]_. + References + ---------- + .. [1] Dan Simon. "Optimal State Estimation." John Wiley & Sons. + p. 208-212. (2006) + .. [2] Roger Labbe. "Kalman and Bayesian Filters in Python" + https://github.com/rlabbe/Kalman-and-Bayesian-Filters-in-Python + """ + + def __init__(self, dim_x, dim_z, dim_u=0): + if dim_x < 1: + raise ValueError('dim_x must be 1 or greater') + if dim_z < 1: + raise ValueError('dim_z must be 1 or greater') + if dim_u < 0: + raise ValueError('dim_u must be 0 or greater') + + self.dim_x = dim_x + self.dim_z = dim_z + self.dim_u = dim_u + + self.x = zeros((dim_x, 1)) # state + self.P = eye(dim_x) # uncertainty covariance + self.Q = eye(dim_x) # process uncertainty + self.B = None # control transition matrix + self.F = eye(dim_x) # state transition matrix + self.H = zeros((dim_z, dim_x)) # measurement function + self.R = eye(dim_z) # measurement uncertainty + self._alpha_sq = 1. # fading memory control + self.M = np.zeros((dim_x, dim_z)) # process-measurement cross correlation + self.z = np.array([[None]*self.dim_z]).T + + # gain and residual are computed during the innovation step. We + # save them so that in case you want to inspect them for various + # purposes + self.K = np.zeros((dim_x, dim_z)) # kalman gain + self.y = zeros((dim_z, 1)) + self.S = np.zeros((dim_z, dim_z)) # system uncertainty + self.SI = np.zeros((dim_z, dim_z)) # inverse system uncertainty + + # identity matrix. Do not alter this. + self._I = np.eye(dim_x) + + # these will always be a copy of x,P after predict() is called + self.x_prior = self.x.copy() + self.P_prior = self.P.copy() + + # these will always be a copy of x,P after update() is called + self.x_post = self.x.copy() + self.P_post = self.P.copy() + + # Only computed only if requested via property + self._log_likelihood = log(sys.float_info.min) + self._likelihood = sys.float_info.min + self._mahalanobis = None + + # keep all observations + self.history_obs = [] + + self.inv = np.linalg.inv + + self.attr_saved = None + self.observed = False + + + def predict(self, u=None, B=None, F=None, Q=None): + """ + Predict next state (prior) using the Kalman filter state propagation + equations. + Parameters + ---------- + u : np.array, default 0 + Optional control vector. + B : np.array(dim_x, dim_u), or None + Optional control transition matrix; a value of None + will cause the filter to use `self.B`. + F : np.array(dim_x, dim_x), or None + Optional state transition matrix; a value of None + will cause the filter to use `self.F`. + Q : np.array(dim_x, dim_x), scalar, or None + Optional process noise matrix; a value of None will cause the + filter to use `self.Q`. + """ + + if B is None: + B = self.B + if F is None: + F = self.F + if Q is None: + Q = self.Q + elif isscalar(Q): + Q = eye(self.dim_x) * Q + + + # x = Fx + Bu + if B is not None and u is not None: + self.x = dot(F, self.x) + dot(B, u) + else: + self.x = dot(F, self.x) + + # P = FPF' + Q + self.P = self._alpha_sq * dot(dot(F, self.P), F.T) + Q + + # save prior + self.x_prior = self.x.copy() + self.P_prior = self.P.copy() + + + + def freeze(self): + """ + Save the parameters before non-observation forward + """ + self.attr_saved = deepcopy(self.__dict__) + + + def unfreeze(self): + if self.attr_saved is not None: + new_history = deepcopy(self.history_obs) + self.__dict__ = self.attr_saved + # self.history_obs = new_history + self.history_obs = self.history_obs[:-1] + occur = [int(d is None) for d in new_history] + indices = np.where(np.array(occur)==0)[0] + index1 = indices[-2] + index2 = indices[-1] + box1 = new_history[index1] + x1, y1, s1, r1, c1 = box1 + w1 = np.sqrt(s1 * r1) + h1 = np.sqrt(s1 / r1) + box2 = new_history[index2] + x2, y2, s2, r2, c2 = box2 + w2 = np.sqrt(s2 * r2) + h2 = np.sqrt(s2 / r2) + time_gap = index2 - index1 + dx = (x2-x1)/time_gap + dy = (y2-y1)/time_gap + dw = (w2-w1)/time_gap + dh = (h2-h1)/time_gap + dc = (c2 - c1) / time_gap + for i in range(index2 - index1): + """ + The default virtual trajectory generation is by linear + motion (constant speed hypothesis), you could modify this + part to implement your own. + """ + x = x1 + (i+1) * dx + y = y1 + (i+1) * dy + w = w1 + (i+1) * dw + h = h1 + (i+1) * dh + s = w * h + r = w / float(h) + c = c1 + (i+1) * dc + new_box = np.array([x, y, s, r, c]).reshape((5, 1)) + """ + I still use predict-update loop here to refresh the parameters, + but this can be faster by directly modifying the internal parameters + as suggested in the paper. I keep this naive but slow way for + easy read and understanding + """ + self.update(new_box) + if not i == (index2-index1-1): + self.predict() + + + def update(self, z, R=None, H=None): + """ + Add a new measurement (z) to the Kalman filter. + If z is None, nothing is computed. However, x_post and P_post are + updated with the prior (x_prior, P_prior), and self.z is set to None. + Parameters + ---------- + z : (dim_z, 1): array_like + measurement for this update. z can be a scalar if dim_z is 1, + otherwise it must be convertible to a column vector. + If you pass in a value of H, z must be a column vector the + of the correct size. + R : np.array, scalar, or None + Optionally provide R to override the measurement noise for this + one call, otherwise self.R will be used. + H : np.array, or None + Optionally provide H to override the measurement function for this + one call, otherwise self.H will be used. + """ + + # set to None to force recompute + self._log_likelihood = None + self._likelihood = None + self._mahalanobis = None + + # append the observation + self.history_obs.append(z) + + if z is None: + if self.observed: + """ + Got no observation so freeze the current parameters for future + potential online smoothing. + """ + self.freeze() + self.observed = False + self.z = np.array([[None]*self.dim_z]).T + self.x_post = self.x.copy() + self.P_post = self.P.copy() + self.y = zeros((self.dim_z, 1)) + return + + # self.observed = True + if not self.observed: + """ + Get observation, use online smoothing to re-update parameters + """ + self.unfreeze() + self.observed = True + + if R is None: + R = self.R + elif isscalar(R): + R = eye(self.dim_z) * R + + if H is None: + z = reshape_z(z, self.dim_z, self.x.ndim) + H = self.H + + # y = z - Hx + # error (residual) between measurement and prediction + self.y = z - dot(H, self.x) + + # common subexpression for speed + PHT = dot(self.P, H.T) + + # S = HPH' + R + # project system uncertainty into measurement space + self.S = dot(H, PHT) + R + self.SI = self.inv(self.S) + # K = PH'inv(S) + # map system uncertainty into kalman gain + self.K = dot(PHT, self.SI) + + # x = x + Ky + # predict new x with residual scaled by the kalman gain + self.x = self.x + dot(self.K, self.y) + + # P = (I-KH)P(I-KH)' + KRK' + # This is more numerically stable + # and works for non-optimal K vs the equation + # P = (I-KH)P usually seen in the literature. + + I_KH = self._I - dot(self.K, H) + self.P = dot(dot(I_KH, self.P), I_KH.T) + dot(dot(self.K, R), self.K.T) + + # save measurement and posterior state + self.z = deepcopy(z) + self.x_post = self.x.copy() + self.P_post = self.P.copy() + + def predict_steadystate(self, u=0, B=None): + """ + Predict state (prior) using the Kalman filter state propagation + equations. Only x is updated, P is left unchanged. See + update_steadstate() for a longer explanation of when to use this + method. + Parameters + ---------- + u : np.array + Optional control vector. If non-zero, it is multiplied by B + to create the control input into the system. + B : np.array(dim_x, dim_u), or None + Optional control transition matrix; a value of None + will cause the filter to use `self.B`. + """ + + if B is None: + B = self.B + + # x = Fx + Bu + if B is not None: + self.x = dot(self.F, self.x) + dot(B, u) + else: + self.x = dot(self.F, self.x) + + # save prior + self.x_prior = self.x.copy() + self.P_prior = self.P.copy() + + def update_steadystate(self, z): + """ + Add a new measurement (z) to the Kalman filter without recomputing + the Kalman gain K, the state covariance P, or the system + uncertainty S. + You can use this for LTI systems since the Kalman gain and covariance + converge to a fixed value. Precompute these and assign them explicitly, + or run the Kalman filter using the normal predict()/update(0 cycle + until they converge. + The main advantage of this call is speed. We do significantly less + computation, notably avoiding a costly matrix inversion. + Use in conjunction with predict_steadystate(), otherwise P will grow + without bound. + Parameters + ---------- + z : (dim_z, 1): array_like + measurement for this update. z can be a scalar if dim_z is 1, + otherwise it must be convertible to a column vector. + Examples + -------- + >>> cv = kinematic_kf(dim=3, order=2) # 3D const velocity filter + >>> # let filter converge on representative data, then save k and P + >>> for i in range(100): + >>> cv.predict() + >>> cv.update([i, i, i]) + >>> saved_k = np.copy(cv.K) + >>> saved_P = np.copy(cv.P) + later on: + >>> cv = kinematic_kf(dim=3, order=2) # 3D const velocity filter + >>> cv.K = np.copy(saved_K) + >>> cv.P = np.copy(saved_P) + >>> for i in range(100): + >>> cv.predict_steadystate() + >>> cv.update_steadystate([i, i, i]) + """ + + # set to None to force recompute + self._log_likelihood = None + self._likelihood = None + self._mahalanobis = None + + if z is None: + self.z = np.array([[None]*self.dim_z]).T + self.x_post = self.x.copy() + self.P_post = self.P.copy() + self.y = zeros((self.dim_z, 1)) + return + + z = reshape_z(z, self.dim_z, self.x.ndim) + + # y = z - Hx + # error (residual) between measurement and prediction + self.y = z - dot(self.H, self.x) + + # x = x + Ky + # predict new x with residual scaled by the kalman gain + self.x = self.x + dot(self.K, self.y) + + self.z = deepcopy(z) + self.x_post = self.x.copy() + self.P_post = self.P.copy() + + # set to None to force recompute + self._log_likelihood = None + self._likelihood = None + self._mahalanobis = None + + def update_correlated(self, z, R=None, H=None): + """ Add a new measurement (z) to the Kalman filter assuming that + process noise and measurement noise are correlated as defined in + the `self.M` matrix. + A partial derivation can be found in [1] + If z is None, nothing is changed. + Parameters + ---------- + z : (dim_z, 1): array_like + measurement for this update. z can be a scalar if dim_z is 1, + otherwise it must be convertible to a column vector. + R : np.array, scalar, or None + Optionally provide R to override the measurement noise for this + one call, otherwise self.R will be used. + H : np.array, or None + Optionally provide H to override the measurement function for this + one call, otherwise self.H will be used. + References + ---------- + .. [1] Bulut, Y. (2011). Applied Kalman filter theory (Doctoral dissertation, Northeastern University). + http://people.duke.edu/~hpgavin/SystemID/References/Balut-KalmanFilter-PhD-NEU-2011.pdf + """ + + # set to None to force recompute + self._log_likelihood = None + self._likelihood = None + self._mahalanobis = None + + if z is None: + self.z = np.array([[None]*self.dim_z]).T + self.x_post = self.x.copy() + self.P_post = self.P.copy() + self.y = zeros((self.dim_z, 1)) + return + + if R is None: + R = self.R + elif isscalar(R): + R = eye(self.dim_z) * R + + # rename for readability and a tiny extra bit of speed + if H is None: + z = reshape_z(z, self.dim_z, self.x.ndim) + H = self.H + + # handle special case: if z is in form [[z]] but x is not a column + # vector dimensions will not match + if self.x.ndim == 1 and shape(z) == (1, 1): + z = z[0] + + if shape(z) == (): # is it scalar, e.g. z=3 or z=np.array(3) + z = np.asarray([z]) + + # y = z - Hx + # error (residual) between measurement and prediction + self.y = z - dot(H, self.x) + + # common subexpression for speed + PHT = dot(self.P, H.T) + + # project system uncertainty into measurement space + self.S = dot(H, PHT) + dot(H, self.M) + dot(self.M.T, H.T) + R + self.SI = self.inv(self.S) + + # K = PH'inv(S) + # map system uncertainty into kalman gain + self.K = dot(PHT + self.M, self.SI) + + # x = x + Ky + # predict new x with residual scaled by the kalman gain + self.x = self.x + dot(self.K, self.y) + self.P = self.P - dot(self.K, dot(H, self.P) + self.M.T) + + self.z = deepcopy(z) + self.x_post = self.x.copy() + self.P_post = self.P.copy() + + def batch_filter(self, zs, Fs=None, Qs=None, Hs=None, + Rs=None, Bs=None, us=None, update_first=False, + saver=None): + """ Batch processes a sequences of measurements. + Parameters + ---------- + zs : list-like + list of measurements at each time step `self.dt`. Missing + measurements must be represented by `None`. + Fs : None, list-like, default=None + optional value or list of values to use for the state transition + matrix F. + If Fs is None then self.F is used for all epochs. + Otherwise it must contain a list-like list of F's, one for + each epoch. This allows you to have varying F per epoch. + Qs : None, np.array or list-like, default=None + optional value or list of values to use for the process error + covariance Q. + If Qs is None then self.Q is used for all epochs. + Otherwise it must contain a list-like list of Q's, one for + each epoch. This allows you to have varying Q per epoch. + Hs : None, np.array or list-like, default=None + optional list of values to use for the measurement matrix H. + If Hs is None then self.H is used for all epochs. + If Hs contains a single matrix, then it is used as H for all + epochs. + Otherwise it must contain a list-like list of H's, one for + each epoch. This allows you to have varying H per epoch. + Rs : None, np.array or list-like, default=None + optional list of values to use for the measurement error + covariance R. + If Rs is None then self.R is used for all epochs. + Otherwise it must contain a list-like list of R's, one for + each epoch. This allows you to have varying R per epoch. + Bs : None, np.array or list-like, default=None + optional list of values to use for the control transition matrix B. + If Bs is None then self.B is used for all epochs. + Otherwise it must contain a list-like list of B's, one for + each epoch. This allows you to have varying B per epoch. + us : None, np.array or list-like, default=None + optional list of values to use for the control input vector; + If us is None then None is used for all epochs (equivalent to 0, + or no control input). + Otherwise it must contain a list-like list of u's, one for + each epoch. + update_first : bool, optional, default=False + controls whether the order of operations is update followed by + predict, or predict followed by update. Default is predict->update. + saver : filterpy.common.Saver, optional + filterpy.common.Saver object. If provided, saver.save() will be + called after every epoch + Returns + ------- + means : np.array((n,dim_x,1)) + array of the state for each time step after the update. Each entry + is an np.array. In other words `means[k,:]` is the state at step + `k`. + covariance : np.array((n,dim_x,dim_x)) + array of the covariances for each time step after the update. + In other words `covariance[k,:,:]` is the covariance at step `k`. + means_predictions : np.array((n,dim_x,1)) + array of the state for each time step after the predictions. Each + entry is an np.array. In other words `means[k,:]` is the state at + step `k`. + covariance_predictions : np.array((n,dim_x,dim_x)) + array of the covariances for each time step after the prediction. + In other words `covariance[k,:,:]` is the covariance at step `k`. + Examples + -------- + .. code-block:: Python + # this example demonstrates tracking a measurement where the time + # between measurement varies, as stored in dts. This requires + # that F be recomputed for each epoch. The output is then smoothed + # with an RTS smoother. + zs = [t + random.randn()*4 for t in range (40)] + Fs = [np.array([[1., dt], [0, 1]] for dt in dts] + (mu, cov, _, _) = kf.batch_filter(zs, Fs=Fs) + (xs, Ps, Ks, Pps) = kf.rts_smoother(mu, cov, Fs=Fs) + """ + + #pylint: disable=too-many-statements + n = np.size(zs, 0) + if Fs is None: + Fs = [self.F] * n + if Qs is None: + Qs = [self.Q] * n + if Hs is None: + Hs = [self.H] * n + if Rs is None: + Rs = [self.R] * n + if Bs is None: + Bs = [self.B] * n + if us is None: + us = [0] * n + + # mean estimates from Kalman Filter + if self.x.ndim == 1: + means = zeros((n, self.dim_x)) + means_p = zeros((n, self.dim_x)) + else: + means = zeros((n, self.dim_x, 1)) + means_p = zeros((n, self.dim_x, 1)) + + # state covariances from Kalman Filter + covariances = zeros((n, self.dim_x, self.dim_x)) + covariances_p = zeros((n, self.dim_x, self.dim_x)) + + if update_first: + for i, (z, F, Q, H, R, B, u) in enumerate(zip(zs, Fs, Qs, Hs, Rs, Bs, us)): + + self.update(z, R=R, H=H) + means[i, :] = self.x + covariances[i, :, :] = self.P + + self.predict(u=u, B=B, F=F, Q=Q) + means_p[i, :] = self.x + covariances_p[i, :, :] = self.P + + if saver is not None: + saver.save() + else: + for i, (z, F, Q, H, R, B, u) in enumerate(zip(zs, Fs, Qs, Hs, Rs, Bs, us)): + + self.predict(u=u, B=B, F=F, Q=Q) + means_p[i, :] = self.x + covariances_p[i, :, :] = self.P + + self.update(z, R=R, H=H) + means[i, :] = self.x + covariances[i, :, :] = self.P + + if saver is not None: + saver.save() + + return (means, covariances, means_p, covariances_p) + + def rts_smoother(self, Xs, Ps, Fs=None, Qs=None, inv=np.linalg.inv): + """ + Runs the Rauch-Tung-Striebel Kalman smoother on a set of + means and covariances computed by a Kalman filter. The usual input + would come from the output of `KalmanFilter.batch_filter()`. + Parameters + ---------- + Xs : numpy.array + array of the means (state variable x) of the output of a Kalman + filter. + Ps : numpy.array + array of the covariances of the output of a kalman filter. + Fs : list-like collection of numpy.array, optional + State transition matrix of the Kalman filter at each time step. + Optional, if not provided the filter's self.F will be used + Qs : list-like collection of numpy.array, optional + Process noise of the Kalman filter at each time step. Optional, + if not provided the filter's self.Q will be used + inv : function, default numpy.linalg.inv + If you prefer another inverse function, such as the Moore-Penrose + pseudo inverse, set it to that instead: kf.inv = np.linalg.pinv + Returns + ------- + x : numpy.ndarray + smoothed means + P : numpy.ndarray + smoothed state covariances + K : numpy.ndarray + smoother gain at each step + Pp : numpy.ndarray + Predicted state covariances + Examples + -------- + .. code-block:: Python + zs = [t + random.randn()*4 for t in range (40)] + (mu, cov, _, _) = kalman.batch_filter(zs) + (x, P, K, Pp) = rts_smoother(mu, cov, kf.F, kf.Q) + """ + + if len(Xs) != len(Ps): + raise ValueError('length of Xs and Ps must be the same') + + n = Xs.shape[0] + dim_x = Xs.shape[1] + + if Fs is None: + Fs = [self.F] * n + if Qs is None: + Qs = [self.Q] * n + + # smoother gain + K = zeros((n, dim_x, dim_x)) + + x, P, Pp = Xs.copy(), Ps.copy(), Ps.copy() + for k in range(n-2, -1, -1): + Pp[k] = dot(dot(Fs[k+1], P[k]), Fs[k+1].T) + Qs[k+1] + + #pylint: disable=bad-whitespace + K[k] = dot(dot(P[k], Fs[k+1].T), inv(Pp[k])) + x[k] += dot(K[k], x[k+1] - dot(Fs[k+1], x[k])) + P[k] += dot(dot(K[k], P[k+1] - Pp[k]), K[k].T) + + return (x, P, K, Pp) + + def get_prediction(self, u=None, B=None, F=None, Q=None): + """ + Predict next state (prior) using the Kalman filter state propagation + equations and returns it without modifying the object. + Parameters + ---------- + u : np.array, default 0 + Optional control vector. + B : np.array(dim_x, dim_u), or None + Optional control transition matrix; a value of None + will cause the filter to use `self.B`. + F : np.array(dim_x, dim_x), or None + Optional state transition matrix; a value of None + will cause the filter to use `self.F`. + Q : np.array(dim_x, dim_x), scalar, or None + Optional process noise matrix; a value of None will cause the + filter to use `self.Q`. + Returns + ------- + (x, P) : tuple + State vector and covariance array of the prediction. + """ + + if B is None: + B = self.B + if F is None: + F = self.F + if Q is None: + Q = self.Q + elif isscalar(Q): + Q = eye(self.dim_x) * Q + + # x = Fx + Bu + if B is not None and u is not None: + x = dot(F, self.x) + dot(B, u) + else: + x = dot(F, self.x) + + # P = FPF' + Q + P = self._alpha_sq * dot(dot(F, self.P), F.T) + Q + + return x, P + + def get_update(self, z=None): + """ + Computes the new estimate based on measurement `z` and returns it + without altering the state of the filter. + Parameters + ---------- + z : (dim_z, 1): array_like + measurement for this update. z can be a scalar if dim_z is 1, + otherwise it must be convertible to a column vector. + Returns + ------- + (x, P) : tuple + State vector and covariance array of the update. + """ + + if z is None: + return self.x, self.P + z = reshape_z(z, self.dim_z, self.x.ndim) + + R = self.R + H = self.H + P = self.P + x = self.x + + # error (residual) between measurement and prediction + y = z - dot(H, x) + + # common subexpression for speed + PHT = dot(P, H.T) + + # project system uncertainty into measurement space + S = dot(H, PHT) + R + + # map system uncertainty into kalman gain + K = dot(PHT, self.inv(S)) + + # predict new x with residual scaled by the kalman gain + x = x + dot(K, y) + + # P = (I-KH)P(I-KH)' + KRK' + I_KH = self._I - dot(K, H) + P = dot(dot(I_KH, P), I_KH.T) + dot(dot(K, R), K.T) + + return x, P + + def residual_of(self, z): + """ + Returns the residual for the given measurement (z). Does not alter + the state of the filter. + """ + z = reshape_z(z, self.dim_z, self.x.ndim) + return z - dot(self.H, self.x_prior) + + def measurement_of_state(self, x): + """ + Helper function that converts a state into a measurement. + Parameters + ---------- + x : np.array + kalman state vector + Returns + ------- + z : (dim_z, 1): array_like + measurement for this update. z can be a scalar if dim_z is 1, + otherwise it must be convertible to a column vector. + """ + + return dot(self.H, x) + + @property + def log_likelihood(self): + """ + log-likelihood of the last measurement. + """ + if self._log_likelihood is None: + self._log_likelihood = logpdf(x=self.y, cov=self.S) + return self._log_likelihood + + @property + def likelihood(self): + """ + Computed from the log-likelihood. The log-likelihood can be very + small, meaning a large negative value such as -28000. Taking the + exp() of that results in 0.0, which can break typical algorithms + which multiply by this value, so by default we always return a + number >= sys.float_info.min. + """ + if self._likelihood is None: + self._likelihood = exp(self.log_likelihood) + if self._likelihood == 0: + self._likelihood = sys.float_info.min + return self._likelihood + + @property + def mahalanobis(self): + """" + Mahalanobis distance of measurement. E.g. 3 means measurement + was 3 standard deviations away from the predicted value. + Returns + ------- + mahalanobis : float + """ + if self._mahalanobis is None: + self._mahalanobis = sqrt(float(dot(dot(self.y.T, self.SI), self.y))) + return self._mahalanobis + + @property + def alpha(self): + """ + Fading memory setting. 1.0 gives the normal Kalman filter, and + values slightly larger than 1.0 (such as 1.02) give a fading + memory effect - previous measurements have less influence on the + filter's estimates. This formulation of the Fading memory filter + (there are many) is due to Dan Simon [1]_. + """ + return self._alpha_sq**.5 + + def log_likelihood_of(self, z): + """ + log likelihood of the measurement `z`. This should only be called + after a call to update(). Calling after predict() will yield an + incorrect result.""" + + if z is None: + return log(sys.float_info.min) + return logpdf(z, dot(self.H, self.x), self.S) + + @alpha.setter + def alpha(self, value): + if not np.isscalar(value) or value < 1: + raise ValueError('alpha must be a float greater than 1') + + self._alpha_sq = value**2 + + def __repr__(self): + return '\n'.join([ + 'KalmanFilter object', + pretty_str('dim_x', self.dim_x), + pretty_str('dim_z', self.dim_z), + pretty_str('dim_u', self.dim_u), + pretty_str('x', self.x), + pretty_str('P', self.P), + pretty_str('x_prior', self.x_prior), + pretty_str('P_prior', self.P_prior), + pretty_str('x_post', self.x_post), + pretty_str('P_post', self.P_post), + pretty_str('F', self.F), + pretty_str('Q', self.Q), + pretty_str('R', self.R), + pretty_str('H', self.H), + pretty_str('K', self.K), + pretty_str('y', self.y), + pretty_str('S', self.S), + pretty_str('SI', self.SI), + pretty_str('M', self.M), + pretty_str('B', self.B), + pretty_str('z', self.z), + pretty_str('log-likelihood', self.log_likelihood), + pretty_str('likelihood', self.likelihood), + pretty_str('mahalanobis', self.mahalanobis), + pretty_str('alpha', self.alpha), + pretty_str('inv', self.inv) + ]) + + def test_matrix_dimensions(self, z=None, H=None, R=None, F=None, Q=None): + """ + Performs a series of asserts to check that the size of everything + is what it should be. This can help you debug problems in your design. + If you pass in H, R, F, Q those will be used instead of this object's + value for those matrices. + Testing `z` (the measurement) is problamatic. x is a vector, and can be + implemented as either a 1D array or as a nx1 column vector. Thus Hx + can be of different shapes. Then, if Hx is a single value, it can + be either a 1D array or 2D vector. If either is true, z can reasonably + be a scalar (either '3' or np.array('3') are scalars under this + definition), a 1D, 1 element array, or a 2D, 1 element array. You are + allowed to pass in any combination that works. + """ + + if H is None: + H = self.H + if R is None: + R = self.R + if F is None: + F = self.F + if Q is None: + Q = self.Q + x = self.x + P = self.P + + assert x.ndim == 1 or x.ndim == 2, \ + "x must have one or two dimensions, but has {}".format(x.ndim) + + if x.ndim == 1: + assert x.shape[0] == self.dim_x, \ + "Shape of x must be ({},{}), but is {}".format( + self.dim_x, 1, x.shape) + else: + assert x.shape == (self.dim_x, 1), \ + "Shape of x must be ({},{}), but is {}".format( + self.dim_x, 1, x.shape) + + assert P.shape == (self.dim_x, self.dim_x), \ + "Shape of P must be ({},{}), but is {}".format( + self.dim_x, self.dim_x, P.shape) + + assert Q.shape == (self.dim_x, self.dim_x), \ + "Shape of Q must be ({},{}), but is {}".format( + self.dim_x, self.dim_x, P.shape) + + assert F.shape == (self.dim_x, self.dim_x), \ + "Shape of F must be ({},{}), but is {}".format( + self.dim_x, self.dim_x, F.shape) + + assert np.ndim(H) == 2, \ + "Shape of H must be (dim_z, {}), but is {}".format( + P.shape[0], shape(H)) + + assert H.shape[1] == P.shape[0], \ + "Shape of H must be (dim_z, {}), but is {}".format( + P.shape[0], H.shape) + + # shape of R must be the same as HPH' + hph_shape = (H.shape[0], H.shape[0]) + r_shape = shape(R) + + if H.shape[0] == 1: + # r can be scalar, 1D, or 2D in this case + assert r_shape in [(), (1,), (1, 1)], \ + "R must be scalar or one element array, but is shaped {}".format( + r_shape) + else: + assert r_shape == hph_shape, \ + "shape of R should be {} but it is {}".format(hph_shape, r_shape) + + + if z is not None: + z_shape = shape(z) + else: + z_shape = (self.dim_z, 1) + + # H@x must have shape of z + Hx = dot(H, x) + + if z_shape == (): # scalar or np.array(scalar) + assert Hx.ndim == 1 or shape(Hx) == (1, 1), \ + "shape of z should be {}, not {} for the given H".format( + shape(Hx), z_shape) + + elif shape(Hx) == (1,): + assert z_shape[0] == 1, 'Shape of z must be {} for the given H'.format(shape(Hx)) + + else: + assert (z_shape == shape(Hx) or + (len(z_shape) == 1 and shape(Hx) == (z_shape[0], 1))), \ + "shape of z should be {}, not {} for the given H".format( + shape(Hx), z_shape) + + if np.ndim(Hx) > 1 and shape(Hx) != (1, 1): + assert shape(Hx) == z_shape, \ + 'shape of z should be {} for the given H, but it is {}'.format( + shape(Hx), z_shape) + + +def update(x, P, z, R, H=None, return_all=False): + """ + Add a new measurement (z) to the Kalman filter. If z is None, nothing + is changed. + This can handle either the multidimensional or unidimensional case. If + all parameters are floats instead of arrays the filter will still work, + and return floats for x, P as the result. + update(1, 2, 1, 1, 1) # univariate + update(x, P, 1 + Parameters + ---------- + x : numpy.array(dim_x, 1), or float + State estimate vector + P : numpy.array(dim_x, dim_x), or float + Covariance matrix + z : (dim_z, 1): array_like + measurement for this update. z can be a scalar if dim_z is 1, + otherwise it must be convertible to a column vector. + R : numpy.array(dim_z, dim_z), or float + Measurement noise matrix + H : numpy.array(dim_x, dim_x), or float, optional + Measurement function. If not provided, a value of 1 is assumed. + return_all : bool, default False + If true, y, K, S, and log_likelihood are returned, otherwise + only x and P are returned. + Returns + ------- + x : numpy.array + Posterior state estimate vector + P : numpy.array + Posterior covariance matrix + y : numpy.array or scalar + Residua. Difference between measurement and state in measurement space + K : numpy.array + Kalman gain + S : numpy.array + System uncertainty in measurement space + log_likelihood : float + log likelihood of the measurement + """ + + #pylint: disable=bare-except + + if z is None: + if return_all: + return x, P, None, None, None, None + return x, P + + if H is None: + H = np.array([1]) + + if np.isscalar(H): + H = np.array([H]) + + Hx = np.atleast_1d(dot(H, x)) + z = reshape_z(z, Hx.shape[0], x.ndim) + + # error (residual) between measurement and prediction + y = z - Hx + + # project system uncertainty into measurement space + S = dot(dot(H, P), H.T) + R + + + # map system uncertainty into kalman gain + try: + K = dot(dot(P, H.T), linalg.inv(S)) + except: + # can't invert a 1D array, annoyingly + K = dot(dot(P, H.T), 1./S) + + + # predict new x with residual scaled by the kalman gain + x = x + dot(K, y) + + # P = (I-KH)P(I-KH)' + KRK' + KH = dot(K, H) + + try: + I_KH = np.eye(KH.shape[0]) - KH + except: + I_KH = np.array([1 - KH]) + P = dot(dot(I_KH, P), I_KH.T) + dot(dot(K, R), K.T) + + + if return_all: + # compute log likelihood + log_likelihood = logpdf(z, dot(H, x), S) + return x, P, y, K, S, log_likelihood + return x, P + + +def update_steadystate(x, z, K, H=None): + """ + Add a new measurement (z) to the Kalman filter. If z is None, nothing + is changed. + Parameters + ---------- + x : numpy.array(dim_x, 1), or float + State estimate vector + z : (dim_z, 1): array_like + measurement for this update. z can be a scalar if dim_z is 1, + otherwise it must be convertible to a column vector. + K : numpy.array, or float + Kalman gain matrix + H : numpy.array(dim_x, dim_x), or float, optional + Measurement function. If not provided, a value of 1 is assumed. + Returns + ------- + x : numpy.array + Posterior state estimate vector + Examples + -------- + This can handle either the multidimensional or unidimensional case. If + all parameters are floats instead of arrays the filter will still work, + and return floats for x, P as the result. + >>> update_steadystate(1, 2, 1) # univariate + >>> update_steadystate(x, P, z, H) + """ + + + if z is None: + return x + + if H is None: + H = np.array([1]) + + if np.isscalar(H): + H = np.array([H]) + + Hx = np.atleast_1d(dot(H, x)) + z = reshape_z(z, Hx.shape[0], x.ndim) + + # error (residual) between measurement and prediction + y = z - Hx + + # estimate new x with residual scaled by the kalman gain + return x + dot(K, y) + + +def predict(x, P, F=1, Q=0, u=0, B=1, alpha=1.): + """ + Predict next state (prior) using the Kalman filter state propagation + equations. + Parameters + ---------- + x : numpy.array + State estimate vector + P : numpy.array + Covariance matrix + F : numpy.array() + State Transition matrix + Q : numpy.array, Optional + Process noise matrix + u : numpy.array, Optional, default 0. + Control vector. If non-zero, it is multiplied by B + to create the control input into the system. + B : numpy.array, optional, default 0. + Control transition matrix. + alpha : float, Optional, default=1.0 + Fading memory setting. 1.0 gives the normal Kalman filter, and + values slightly larger than 1.0 (such as 1.02) give a fading + memory effect - previous measurements have less influence on the + filter's estimates. This formulation of the Fading memory filter + (there are many) is due to Dan Simon + Returns + ------- + x : numpy.array + Prior state estimate vector + P : numpy.array + Prior covariance matrix + """ + + if np.isscalar(F): + F = np.array(F) + x = dot(F, x) + dot(B, u) + P = (alpha * alpha) * dot(dot(F, P), F.T) + Q + + return x, P + + +def predict_steadystate(x, F=1, u=0, B=1): + """ + Predict next state (prior) using the Kalman filter state propagation + equations. This steady state form only computes x, assuming that the + covariance is constant. + Parameters + ---------- + x : numpy.array + State estimate vector + P : numpy.array + Covariance matrix + F : numpy.array() + State Transition matrix + u : numpy.array, Optional, default 0. + Control vector. If non-zero, it is multiplied by B + to create the control input into the system. + B : numpy.array, optional, default 0. + Control transition matrix. + Returns + ------- + x : numpy.array + Prior state estimate vector + """ + + if np.isscalar(F): + F = np.array(F) + x = dot(F, x) + dot(B, u) + + return x + + + +def batch_filter(x, P, zs, Fs, Qs, Hs, Rs, Bs=None, us=None, + update_first=False, saver=None): + """ + Batch processes a sequences of measurements. + Parameters + ---------- + zs : list-like + list of measurements at each time step. Missing measurements must be + represented by None. + Fs : list-like + list of values to use for the state transition matrix matrix. + Qs : list-like + list of values to use for the process error + covariance. + Hs : list-like + list of values to use for the measurement matrix. + Rs : list-like + list of values to use for the measurement error + covariance. + Bs : list-like, optional + list of values to use for the control transition matrix; + a value of None in any position will cause the filter + to use `self.B` for that time step. + us : list-like, optional + list of values to use for the control input vector; + a value of None in any position will cause the filter to use + 0 for that time step. + update_first : bool, optional + controls whether the order of operations is update followed by + predict, or predict followed by update. Default is predict->update. + saver : filterpy.common.Saver, optional + filterpy.common.Saver object. If provided, saver.save() will be + called after every epoch + Returns + ------- + means : np.array((n,dim_x,1)) + array of the state for each time step after the update. Each entry + is an np.array. In other words `means[k,:]` is the state at step + `k`. + covariance : np.array((n,dim_x,dim_x)) + array of the covariances for each time step after the update. + In other words `covariance[k,:,:]` is the covariance at step `k`. + means_predictions : np.array((n,dim_x,1)) + array of the state for each time step after the predictions. Each + entry is an np.array. In other words `means[k,:]` is the state at + step `k`. + covariance_predictions : np.array((n,dim_x,dim_x)) + array of the covariances for each time step after the prediction. + In other words `covariance[k,:,:]` is the covariance at step `k`. + Examples + -------- + .. code-block:: Python + zs = [t + random.randn()*4 for t in range (40)] + Fs = [kf.F for t in range (40)] + Hs = [kf.H for t in range (40)] + (mu, cov, _, _) = kf.batch_filter(zs, Rs=R_list, Fs=Fs, Hs=Hs, Qs=None, + Bs=None, us=None, update_first=False) + (xs, Ps, Ks, Pps) = kf.rts_smoother(mu, cov, Fs=Fs, Qs=None) + """ + + n = np.size(zs, 0) + dim_x = x.shape[0] + + # mean estimates from Kalman Filter + if x.ndim == 1: + means = zeros((n, dim_x)) + means_p = zeros((n, dim_x)) + else: + means = zeros((n, dim_x, 1)) + means_p = zeros((n, dim_x, 1)) + + # state covariances from Kalman Filter + covariances = zeros((n, dim_x, dim_x)) + covariances_p = zeros((n, dim_x, dim_x)) + + if us is None: + us = [0.] * n + Bs = [0.] * n + + if update_first: + for i, (z, F, Q, H, R, B, u) in enumerate(zip(zs, Fs, Qs, Hs, Rs, Bs, us)): + + x, P = update(x, P, z, R=R, H=H) + means[i, :] = x + covariances[i, :, :] = P + + x, P = predict(x, P, u=u, B=B, F=F, Q=Q) + means_p[i, :] = x + covariances_p[i, :, :] = P + if saver is not None: + saver.save() + else: + for i, (z, F, Q, H, R, B, u) in enumerate(zip(zs, Fs, Qs, Hs, Rs, Bs, us)): + + x, P = predict(x, P, u=u, B=B, F=F, Q=Q) + means_p[i, :] = x + covariances_p[i, :, :] = P + + x, P = update(x, P, z, R=R, H=H) + means[i, :] = x + covariances[i, :, :] = P + if saver is not None: + saver.save() + + return (means, covariances, means_p, covariances_p) + + + +def rts_smoother(Xs, Ps, Fs, Qs): + """ + Runs the Rauch-Tung-Striebel Kalman smoother on a set of + means and covariances computed by a Kalman filter. The usual input + would come from the output of `KalmanFilter.batch_filter()`. + Parameters + ---------- + Xs : numpy.array + array of the means (state variable x) of the output of a Kalman + filter. + Ps : numpy.array + array of the covariances of the output of a kalman filter. + Fs : list-like collection of numpy.array + State transition matrix of the Kalman filter at each time step. + Qs : list-like collection of numpy.array, optional + Process noise of the Kalman filter at each time step. + Returns + ------- + x : numpy.ndarray + smoothed means + P : numpy.ndarray + smoothed state covariances + K : numpy.ndarray + smoother gain at each step + pP : numpy.ndarray + predicted state covariances + Examples + -------- + .. code-block:: Python + zs = [t + random.randn()*4 for t in range (40)] + (mu, cov, _, _) = kalman.batch_filter(zs) + (x, P, K, pP) = rts_smoother(mu, cov, kf.F, kf.Q) + """ + + if len(Xs) != len(Ps): + raise ValueError('length of Xs and Ps must be the same') + + n = Xs.shape[0] + dim_x = Xs.shape[1] + + # smoother gain + K = zeros((n, dim_x, dim_x)) + x, P, pP = Xs.copy(), Ps.copy(), Ps.copy() + + for k in range(n-2, -1, -1): + pP[k] = dot(dot(Fs[k], P[k]), Fs[k].T) + Qs[k] + + #pylint: disable=bad-whitespace + K[k] = dot(dot(P[k], Fs[k].T), linalg.inv(pP[k])) + x[k] += dot(K[k], x[k+1] - dot(Fs[k], x[k])) + P[k] += dot(dot(K[k], P[k+1] - pP[k]), K[k].T) + + return (x, P, K, pP) \ No newline at end of file diff --git a/trackers/integrated_ocsort_embedding/__init__.py b/trackers/integrated_ocsort_embedding/__init__.py new file mode 100644 index 0000000000000000000000000000000000000000..173109afc3f8bd0d3f4023e0fd98029e62e8cf23 --- /dev/null +++ b/trackers/integrated_ocsort_embedding/__init__.py @@ -0,0 +1,2 @@ +from . import args +from . import ocsort diff --git a/trackers/integrated_ocsort_embedding/args.py b/trackers/integrated_ocsort_embedding/args.py new file mode 100644 index 0000000000000000000000000000000000000000..4bc57ad5280e2c837c01149adf259224686ade8a --- /dev/null +++ b/trackers/integrated_ocsort_embedding/args.py @@ -0,0 +1,110 @@ +import argparse + + +def make_parser(): + parser = argparse.ArgumentParser("OC-SORT parameters") + + # distributed + parser.add_argument("-b", "--batch-size", type=int, default=1, help="batch size") + parser.add_argument("-d", "--devices", default=None, type=int, help="device for training") + + parser.add_argument("--local_rank", default=0, type=int, help="local rank for dist training") + parser.add_argument("--num_machines", default=1, type=int, help="num of node for training") + parser.add_argument("--machine_rank", default=0, type=int, help="node rank for multi-node training") + + parser.add_argument( + "-f", + "--exp_file", + default=None, + type=str, + help="pls input your expriment description file", + ) + parser.add_argument( + "--test", + dest="test", + default=False, + action="store_true", + help="Evaluating on test-dev set.", + ) + parser.add_argument( + "opts", + help="Modify config options using the command-line", + default=None, + nargs=argparse.REMAINDER, + ) + + # det args + parser.add_argument("-c", "--ckpt", default=None, type=str, help="ckpt for eval") + parser.add_argument("--conf", default=0.1, type=float, help="test conf") + parser.add_argument("--nms", default=0.7, type=float, help="test nms threshold") + parser.add_argument("--tsize", default=[800, 1440], nargs="+", type=int, help="test img size") + parser.add_argument("--seed", default=None, type=int, help="eval seed") + + # tracking args + parser.add_argument("--track_thresh", type=float, default=0.6, help="detection confidence threshold") + parser.add_argument( + "--iou_thresh", + type=float, + default=0.3, + help="the iou threshold in Sort for matching", + ) + parser.add_argument("--min_hits", type=int, default=3, help="min hits to create track in SORT") + parser.add_argument( + "--inertia", + type=float, + default=0.2, + help="the weight of VDC term in cost matrix", + ) + parser.add_argument( + "--deltat", + type=int, + default=3, + help="time step difference to estimate direction", + ) + parser.add_argument("--track_buffer", type=int, default=30, help="the frames for keep lost tracks") + parser.add_argument( + "--match_thresh", + type=float, + default=0.9, + help="matching threshold for tracking", + ) + parser.add_argument( + "--gt-type", + type=str, + default="_val_half", + help="suffix to find the gt annotation", + ) + parser.add_argument("--public", action="store_true", help="use public detection") + parser.add_argument("--asso", default="iou", help="similarity function: iou/giou/diou/ciou/ctdis") + + # for kitti/bdd100k inference with public detections + parser.add_argument( + "--raw_results_path", + type=str, + default="exps/permatrack_kitti_test/", + help="path to the raw tracking results from other tracks", + ) + parser.add_argument("--out_path", type=str, help="path to save output results") + parser.add_argument( + "--hp", + action="store_true", + help="use head padding to add the missing objects during \ + initializing the tracks (offline).", + ) + + # for demo video + parser.add_argument("--demo_type", default="image", help="demo type, eg. image, video and webcam") + parser.add_argument("--path", default="./videos/demo.mp4", help="path to images or video") + parser.add_argument("--camid", type=int, default=0, help="webcam demo camera id") + parser.add_argument( + "--save_result", + action="store_true", + help="whether to save the inference result of image/video", + ) + parser.add_argument( + "--device", + default="gpu", + type=str, + help="device to run our model, can either be cpu or gpu", + ) + return parser diff --git a/trackers/integrated_ocsort_embedding/association.py b/trackers/integrated_ocsort_embedding/association.py new file mode 100644 index 0000000000000000000000000000000000000000..ddbe757004e6ae24d0ad26db49cf802909afc1f2 --- /dev/null +++ b/trackers/integrated_ocsort_embedding/association.py @@ -0,0 +1,480 @@ +import numpy as np +import scipy.spatial as sp + + +def iou_batch(bboxes1, bboxes2): + """ + From SORT: Computes IOU between two bboxes in the form [x1,y1,x2,y2] + """ + bboxes2 = np.expand_dims(bboxes2, 0) + bboxes1 = np.expand_dims(bboxes1, 1) + + xx1 = np.maximum(bboxes1[..., 0], bboxes2[..., 0]) + yy1 = np.maximum(bboxes1[..., 1], bboxes2[..., 1]) + xx2 = np.minimum(bboxes1[..., 2], bboxes2[..., 2]) + yy2 = np.minimum(bboxes1[..., 3], bboxes2[..., 3]) + w = np.maximum(0.0, xx2 - xx1) + h = np.maximum(0.0, yy2 - yy1) + wh = w * h + o = wh / ( + (bboxes1[..., 2] - bboxes1[..., 0]) * (bboxes1[..., 3] - bboxes1[..., 1]) + + (bboxes2[..., 2] - bboxes2[..., 0]) * (bboxes2[..., 3] - bboxes2[..., 1]) + - wh + ) + return o + + +def giou_batch(bboxes1, bboxes2): + """ + :param bbox_p: predict of bbox(N,4)(x1,y1,x2,y2) + :param bbox_g: groundtruth of bbox(N,4)(x1,y1,x2,y2) + :return: + """ + # for details should go to https://arxiv.org/pdf/1902.09630.pdf + # ensure predict's bbox form + bboxes2 = np.expand_dims(bboxes2, 0) + bboxes1 = np.expand_dims(bboxes1, 1) + + xx1 = np.maximum(bboxes1[..., 0], bboxes2[..., 0]) + yy1 = np.maximum(bboxes1[..., 1], bboxes2[..., 1]) + xx2 = np.minimum(bboxes1[..., 2], bboxes2[..., 2]) + yy2 = np.minimum(bboxes1[..., 3], bboxes2[..., 3]) + w = np.maximum(0.0, xx2 - xx1) + h = np.maximum(0.0, yy2 - yy1) + wh = w * h + iou = wh / ( + (bboxes1[..., 2] - bboxes1[..., 0]) * (bboxes1[..., 3] - bboxes1[..., 1]) + + (bboxes2[..., 2] - bboxes2[..., 0]) * (bboxes2[..., 3] - bboxes2[..., 1]) + - wh + ) + + xxc1 = np.minimum(bboxes1[..., 0], bboxes2[..., 0]) + yyc1 = np.minimum(bboxes1[..., 1], bboxes2[..., 1]) + xxc2 = np.maximum(bboxes1[..., 2], bboxes2[..., 2]) + yyc2 = np.maximum(bboxes1[..., 3], bboxes2[..., 3]) + wc = xxc2 - xxc1 + hc = yyc2 - yyc1 + assert (wc > 0).all() and (hc > 0).all() + area_enclose = wc * hc + giou = iou - (area_enclose - wh) / area_enclose + giou = (giou + 1.0) / 2.0 # resize from (-1,1) to (0,1) + return giou + + +def diou_batch(bboxes1, bboxes2): + """ + :param bbox_p: predict of bbox(N,4)(x1,y1,x2,y2) + :param bbox_g: groundtruth of bbox(N,4)(x1,y1,x2,y2) + :return: + """ + # for details should go to https://arxiv.org/pdf/1902.09630.pdf + # ensure predict's bbox form + bboxes2 = np.expand_dims(bboxes2, 0) + bboxes1 = np.expand_dims(bboxes1, 1) + + # calculate the intersection box + xx1 = np.maximum(bboxes1[..., 0], bboxes2[..., 0]) + yy1 = np.maximum(bboxes1[..., 1], bboxes2[..., 1]) + xx2 = np.minimum(bboxes1[..., 2], bboxes2[..., 2]) + yy2 = np.minimum(bboxes1[..., 3], bboxes2[..., 3]) + w = np.maximum(0.0, xx2 - xx1) + h = np.maximum(0.0, yy2 - yy1) + wh = w * h + iou = wh / ( + (bboxes1[..., 2] - bboxes1[..., 0]) * (bboxes1[..., 3] - bboxes1[..., 1]) + + (bboxes2[..., 2] - bboxes2[..., 0]) * (bboxes2[..., 3] - bboxes2[..., 1]) + - wh + ) + + centerx1 = (bboxes1[..., 0] + bboxes1[..., 2]) / 2.0 + centery1 = (bboxes1[..., 1] + bboxes1[..., 3]) / 2.0 + centerx2 = (bboxes2[..., 0] + bboxes2[..., 2]) / 2.0 + centery2 = (bboxes2[..., 1] + bboxes2[..., 3]) / 2.0 + + inner_diag = (centerx1 - centerx2) ** 2 + (centery1 - centery2) ** 2 + + xxc1 = np.minimum(bboxes1[..., 0], bboxes2[..., 0]) + yyc1 = np.minimum(bboxes1[..., 1], bboxes2[..., 1]) + xxc2 = np.maximum(bboxes1[..., 2], bboxes2[..., 2]) + yyc2 = np.maximum(bboxes1[..., 3], bboxes2[..., 3]) + + outer_diag = (xxc2 - xxc1) ** 2 + (yyc2 - yyc1) ** 2 + diou = iou - inner_diag / outer_diag + + return (diou + 1) / 2.0 # resize from (-1,1) to (0,1) + + +def ciou_batch(bboxes1, bboxes2): + """ + :param bbox_p: predict of bbox(N,4)(x1,y1,x2,y2) + :param bbox_g: groundtruth of bbox(N,4)(x1,y1,x2,y2) + :return: + """ + # for details should go to https://arxiv.org/pdf/1902.09630.pdf + # ensure predict's bbox form + bboxes2 = np.expand_dims(bboxes2, 0) + bboxes1 = np.expand_dims(bboxes1, 1) + + # calculate the intersection box + xx1 = np.maximum(bboxes1[..., 0], bboxes2[..., 0]) + yy1 = np.maximum(bboxes1[..., 1], bboxes2[..., 1]) + xx2 = np.minimum(bboxes1[..., 2], bboxes2[..., 2]) + yy2 = np.minimum(bboxes1[..., 3], bboxes2[..., 3]) + w = np.maximum(0.0, xx2 - xx1) + h = np.maximum(0.0, yy2 - yy1) + wh = w * h + iou = wh / ( + (bboxes1[..., 2] - bboxes1[..., 0]) * (bboxes1[..., 3] - bboxes1[..., 1]) + + (bboxes2[..., 2] - bboxes2[..., 0]) * (bboxes2[..., 3] - bboxes2[..., 1]) + - wh + ) + + centerx1 = (bboxes1[..., 0] + bboxes1[..., 2]) / 2.0 + centery1 = (bboxes1[..., 1] + bboxes1[..., 3]) / 2.0 + centerx2 = (bboxes2[..., 0] + bboxes2[..., 2]) / 2.0 + centery2 = (bboxes2[..., 1] + bboxes2[..., 3]) / 2.0 + + inner_diag = (centerx1 - centerx2) ** 2 + (centery1 - centery2) ** 2 + + xxc1 = np.minimum(bboxes1[..., 0], bboxes2[..., 0]) + yyc1 = np.minimum(bboxes1[..., 1], bboxes2[..., 1]) + xxc2 = np.maximum(bboxes1[..., 2], bboxes2[..., 2]) + yyc2 = np.maximum(bboxes1[..., 3], bboxes2[..., 3]) + + outer_diag = (xxc2 - xxc1) ** 2 + (yyc2 - yyc1) ** 2 + + w1 = bboxes1[..., 2] - bboxes1[..., 0] + h1 = bboxes1[..., 3] - bboxes1[..., 1] + w2 = bboxes2[..., 2] - bboxes2[..., 0] + h2 = bboxes2[..., 3] - bboxes2[..., 1] + + # prevent dividing over zero. add one pixel shift + h2 = h2 + 1.0 + h1 = h1 + 1.0 + arctan = np.arctan(w2 / h2) - np.arctan(w1 / h1) + v = (4 / (np.pi**2)) * (arctan**2) + S = 1 - iou + alpha = v / (S + v) + ciou = iou - inner_diag / outer_diag - alpha * v + + return (ciou + 1) / 2.0 # resize from (-1,1) to (0,1) + + +def ct_dist(bboxes1, bboxes2): + """ + Measure the center distance between two sets of bounding boxes, + this is a coarse implementation, we don't recommend using it only + for association, which can be unstable and sensitive to frame rate + and object speed. + """ + bboxes2 = np.expand_dims(bboxes2, 0) + bboxes1 = np.expand_dims(bboxes1, 1) + + centerx1 = (bboxes1[..., 0] + bboxes1[..., 2]) / 2.0 + centery1 = (bboxes1[..., 1] + bboxes1[..., 3]) / 2.0 + centerx2 = (bboxes2[..., 0] + bboxes2[..., 2]) / 2.0 + centery2 = (bboxes2[..., 1] + bboxes2[..., 3]) / 2.0 + + ct_dist2 = (centerx1 - centerx2) ** 2 + (centery1 - centery2) ** 2 + + ct_dist = np.sqrt(ct_dist2) + + # The linear rescaling is a naive version and needs more study + ct_dist = ct_dist / ct_dist.max() + return ct_dist.max() - ct_dist # resize to (0,1) + + +def speed_direction_batch(dets, tracks): + tracks = tracks[..., np.newaxis] + CX1, CY1 = (dets[:, 0] + dets[:, 2]) / 2.0, (dets[:, 1] + dets[:, 3]) / 2.0 + CX2, CY2 = (tracks[:, 0] + tracks[:, 2]) / 2.0, (tracks[:, 1] + tracks[:, 3]) / 2.0 + dx = CX1 - CX2 + dy = CY1 - CY2 + norm = np.sqrt(dx**2 + dy**2) + 1e-6 + dx = dx / norm + dy = dy / norm + return dy, dx # size: num_track x num_det + + +def linear_assignment(cost_matrix): + try: + import lap + + _, x, y = lap.lapjv(cost_matrix, extend_cost=True) + return np.array([[y[i], i] for i in x if i >= 0]) # + except ImportError: + from scipy.optimize import linear_sum_assignment + + x, y = linear_sum_assignment(cost_matrix) + return np.array(list(zip(x, y))) + + +def associate_detections_to_trackers(detections, trackers, iou_threshold=0.3): + """ + Assigns detections to tracked object (both represented as bounding boxes) + Returns 3 lists of matches, unmatched_detections and unmatched_trackers + """ + if len(trackers) == 0: + return ( + np.empty((0, 2), dtype=int), + np.arange(len(detections)), + np.empty((0, 5), dtype=int), + ) + + iou_matrix = iou_batch(detections, trackers) + + if min(iou_matrix.shape) > 0: + a = (iou_matrix > iou_threshold).astype(np.int32) + if a.sum(1).max() == 1 and a.sum(0).max() == 1: + matched_indices = np.stack(np.where(a), axis=1) + else: + matched_indices = linear_assignment(-iou_matrix) + else: + matched_indices = np.empty(shape=(0, 2)) + + unmatched_detections = [] + for d, det in enumerate(detections): + if d not in matched_indices[:, 0]: + unmatched_detections.append(d) + unmatched_trackers = [] + for t, trk in enumerate(trackers): + if t not in matched_indices[:, 1]: + unmatched_trackers.append(t) + + # filter out matched with low IOU + matches = [] + for m in matched_indices: + if iou_matrix[m[0], m[1]] < iou_threshold: + unmatched_detections.append(m[0]) + unmatched_trackers.append(m[1]) + else: + matches.append(m.reshape(1, 2)) + if len(matches) == 0: + matches = np.empty((0, 2), dtype=int) + else: + matches = np.concatenate(matches, axis=0) + + return matches, np.array(unmatched_detections), np.array(unmatched_trackers) + + +def compute_aw_new_metric(emb_cost, w_association_emb, max_diff=0.5): + w_emb = np.full_like(emb_cost, w_association_emb) + w_emb_bonus = np.full_like(emb_cost, 0) + + # Needs two columns at least to make sense to boost + if emb_cost.shape[1] >= 2: + # Across all rows + for idx in range(emb_cost.shape[0]): + inds = np.argsort(-emb_cost[idx]) + # Row weight is difference between top / second top + row_weight = min(emb_cost[idx, inds[0]] - emb_cost[idx, inds[1]], max_diff) + # Add to row + w_emb_bonus[idx] += row_weight / 2 + + if emb_cost.shape[0] >= 2: + for idj in range(emb_cost.shape[1]): + inds = np.argsort(-emb_cost[:, idj]) + col_weight = min(emb_cost[inds[0], idj] - emb_cost[inds[1], idj], max_diff) + w_emb_bonus[:, idj] += col_weight / 2 + + return w_emb + w_emb_bonus + + +def split_cosine_dist(dets, trks, affinity_thresh=0.55, pair_diff_thresh=0.6, hard_thresh=True): + + cos_dist = np.zeros((len(dets), len(trks))) + + for i in range(len(dets)): + for j in range(len(trks)): + + cos_d = 1 - sp.distance.cdist(dets[i], trks[j], "cosine") ## shape = 3x3 + patch_affinity = np.max(cos_d, axis=0) ## shape = [3,] + # exp16 - Using Hard threshold + if hard_thresh: + if len(np.where(patch_affinity > affinity_thresh)[0]) != len(patch_affinity): + cos_dist[i, j] = 0 + else: + cos_dist[i, j] = np.max(patch_affinity) + else: + cos_dist[i, j] = np.max(patch_affinity) # can experiment with mean too (max works slightly better) + + return cos_dist + + +def associate( + detections, + trackers, + det_embs, + trk_embs, + iou_threshold, + velocities, + previous_obs, + vdc_weight, + w_assoc_emb, + aw_off, + aw_param, + emb_off, + grid_off, +): + if len(trackers) == 0: + return ( + np.empty((0, 2), dtype=int), + np.arange(len(detections)), + np.empty((0, 5), dtype=int), + ) + + Y, X = speed_direction_batch(detections, previous_obs) + inertia_Y, inertia_X = velocities[:, 0], velocities[:, 1] + inertia_Y = np.repeat(inertia_Y[:, np.newaxis], Y.shape[1], axis=1) + inertia_X = np.repeat(inertia_X[:, np.newaxis], X.shape[1], axis=1) + diff_angle_cos = inertia_X * X + inertia_Y * Y + diff_angle_cos = np.clip(diff_angle_cos, a_min=-1, a_max=1) + diff_angle = np.arccos(diff_angle_cos) + diff_angle = (np.pi / 2.0 - np.abs(diff_angle)) / np.pi + + valid_mask = np.ones(previous_obs.shape[0]) + valid_mask[np.where(previous_obs[:, 4] < 0)] = 0 + + iou_matrix = iou_batch(detections, trackers) + scores = np.repeat(detections[:, -1][:, np.newaxis], trackers.shape[0], axis=1) + # iou_matrix = iou_matrix * scores # a trick sometiems works, we don't encourage this + valid_mask = np.repeat(valid_mask[:, np.newaxis], X.shape[1], axis=1) + + angle_diff_cost = (valid_mask * diff_angle) * vdc_weight + angle_diff_cost = angle_diff_cost.T + angle_diff_cost = angle_diff_cost * scores + + emb_cost = None + if not emb_off: + if grid_off: + emb_cost = None if (trk_embs.shape[0] == 0 or det_embs.shape[0] == 0) else det_embs @ trk_embs.T + else: + # emb_cost = split_cosine_dist(det_embs, trk_embs) + emb_cost = 1 - sp.distance.cdist(det_embs, trk_embs, "cosine") + emb_cost[emb_cost > 0.55] = 0 # affinity_thresh + + if min(iou_matrix.shape) > 0: + a = (iou_matrix > iou_threshold).astype(np.int32) + if a.sum(1).max() == 1 and a.sum(0).max() == 1: + matched_indices = np.stack(np.where(a), axis=1) + else: + if emb_cost is None: + emb_cost = 0 + else: + # emb_cost[iou_matrix <= 0.3] = 0 + pass + if not aw_off: + w_matrix = compute_aw_new_metric(emb_cost, w_assoc_emb, aw_param) + emb_cost *= w_matrix + else: + emb_cost *= w_assoc_emb + + final_cost = -(iou_matrix + angle_diff_cost + emb_cost) + matched_indices = linear_assignment(final_cost) + else: + matched_indices = np.empty(shape=(0, 2)) + + unmatched_detections = [] + for d, det in enumerate(detections): + if d not in matched_indices[:, 0]: + unmatched_detections.append(d) + unmatched_trackers = [] + for t, trk in enumerate(trackers): + if t not in matched_indices[:, 1]: + unmatched_trackers.append(t) + + # filter out matched with low IOU + matches = [] + for m in matched_indices: + if iou_matrix[m[0], m[1]] < iou_threshold: + unmatched_detections.append(m[0]) + unmatched_trackers.append(m[1]) + else: + matches.append(m.reshape(1, 2)) + if len(matches) == 0: + matches = np.empty((0, 2), dtype=int) + else: + matches = np.concatenate(matches, axis=0) + + return matches, np.array(unmatched_detections), np.array(unmatched_trackers) + + +def associate_kitti(detections, trackers, det_cates, iou_threshold, velocities, previous_obs, vdc_weight): + if len(trackers) == 0: + return ( + np.empty((0, 2), dtype=int), + np.arange(len(detections)), + np.empty((0, 5), dtype=int), + ) + + """ + Cost from the velocity direction consistency + """ + Y, X = speed_direction_batch(detections, previous_obs) + inertia_Y, inertia_X = velocities[:, 0], velocities[:, 1] + inertia_Y = np.repeat(inertia_Y[:, np.newaxis], Y.shape[1], axis=1) + inertia_X = np.repeat(inertia_X[:, np.newaxis], X.shape[1], axis=1) + diff_angle_cos = inertia_X * X + inertia_Y * Y + diff_angle_cos = np.clip(diff_angle_cos, a_min=-1, a_max=1) + diff_angle = np.arccos(diff_angle_cos) + diff_angle = (np.pi / 2.0 - np.abs(diff_angle)) / np.pi + + valid_mask = np.ones(previous_obs.shape[0]) + valid_mask[np.where(previous_obs[:, 4] < 0)] = 0 + valid_mask = np.repeat(valid_mask[:, np.newaxis], X.shape[1], axis=1) + + scores = np.repeat(detections[:, -1][:, np.newaxis], trackers.shape[0], axis=1) + angle_diff_cost = (valid_mask * diff_angle) * vdc_weight + angle_diff_cost = angle_diff_cost.T + angle_diff_cost = angle_diff_cost * scores + + """ + Cost from IoU + """ + iou_matrix = iou_batch(detections, trackers) + + """ + With multiple categories, generate the cost for catgory mismatch + """ + num_dets = detections.shape[0] + num_trk = trackers.shape[0] + cate_matrix = np.zeros((num_dets, num_trk)) + for i in range(num_dets): + for j in range(num_trk): + if det_cates[i] != trackers[j, 4]: + cate_matrix[i][j] = -1e6 + + cost_matrix = -iou_matrix - angle_diff_cost - cate_matrix + + if min(iou_matrix.shape) > 0: + a = (iou_matrix > iou_threshold).astype(np.int32) + if a.sum(1).max() == 1 and a.sum(0).max() == 1: + matched_indices = np.stack(np.where(a), axis=1) + else: + matched_indices = linear_assignment(cost_matrix) + else: + matched_indices = np.empty(shape=(0, 2)) + + unmatched_detections = [] + for d, det in enumerate(detections): + if d not in matched_indices[:, 0]: + unmatched_detections.append(d) + unmatched_trackers = [] + for t, trk in enumerate(trackers): + if t not in matched_indices[:, 1]: + unmatched_trackers.append(t) + + # filter out matched with low IOU + matches = [] + for m in matched_indices: + if iou_matrix[m[0], m[1]] < iou_threshold: + unmatched_detections.append(m[0]) + unmatched_trackers.append(m[1]) + else: + matches.append(m.reshape(1, 2)) + if len(matches) == 0: + matches = np.empty((0, 2), dtype=int) + else: + matches = np.concatenate(matches, axis=0) + + return matches, np.array(unmatched_detections), np.array(unmatched_trackers) diff --git a/trackers/integrated_ocsort_embedding/cmc.py b/trackers/integrated_ocsort_embedding/cmc.py new file mode 100644 index 0000000000000000000000000000000000000000..85f63a7581d4317aca44b6956e6eb6935c16dccc --- /dev/null +++ b/trackers/integrated_ocsort_embedding/cmc.py @@ -0,0 +1,177 @@ +import pdb +import pickle +import os + +import cv2 +import numpy as np + + +class CMCComputer: + def __init__(self, minimum_features=10, method="file"): + assert method in ["file", "sparse", "sift"] + + os.makedirs("./cache", exist_ok=True) + self.cache_path = "./cache/affine_ocsort.pkl" + self.cache = {} + # if os.path.exists(self.cache_path): + # with open(self.cache_path, "rb") as fp: + # self.cache = pickle.load(fp) + self.minimum_features = minimum_features + self.prev_img = None + self.prev_desc = None + self.sparse_flow_param = dict( + maxCorners=3000, + qualityLevel=0.01, + minDistance=1, + blockSize=3, + useHarrisDetector=False, + k=0.04, + ) + self.file_computed = {} + + self.comp_function = None + if method == "sparse": + self.comp_function = self._affine_sparse_flow + elif method == "sift": + self.comp_function = self._affine_sift + # Same BoT-SORT CMC arrays + elif method == "file": + self.comp_function = self._affine_file + self.file_affines = {} + # Maps from tag name to file name + self.file_names = {} + + # DanceTrack + for f_name in os.listdir("./cache/cmc_files/DanceTrack/"): + tag = f_name.replace("GMC-", "").replace(".txt", "").replace("-", "") + f_name = os.path.join("./cache/cmc_files/DanceTrack/", f_name) + self.file_names[tag] = f_name + + # All the ablation file names + for f_name in os.listdir("./cache/cmc_files/MOT17_ablation/"): + # The tag that'll be passed into compute_affine based on image name + tag = f_name.replace("GMC-", "").replace(".txt", "") + "-FRCNN" + f_name = os.path.join("./cache/cmc_files/MOT17_ablation/", f_name) + self.file_names[tag] = f_name + for f_name in os.listdir("./cache/cmc_files/MOT20_ablation/"): + tag = f_name.replace("GMC-", "").replace(".txt", "") + f_name = os.path.join("./cache/cmc_files/MOT20_ablation/", f_name) + self.file_names[tag] = f_name + + # All the test file names + for f_name in os.listdir("./cache/cmc_files/MOTChallenge/"): + tag = f_name.replace("GMC-", "").replace(".txt", "") + if "MOT17" in tag: + tag = tag + "-FRCNN" + # If it's an ablation one (not test) don't overwrite it + if tag in self.file_names: + continue + f_name = os.path.join("./cache/cmc_files/MOTChallenge/", f_name) + self.file_names[tag] = f_name + + def compute_affine(self, img, bbox, tag): + img = cv2.cvtColor(img, cv2.COLOR_BGR2GRAY) + if tag in self.cache: + A = self.cache[tag] + return A + mask = np.ones_like(img, dtype=np.uint8) + if bbox.shape[0] > 0: + bbox = np.round(bbox).astype(np.int32) + bbox[bbox < 0] = 0 + for bb in bbox: + mask[bb[1] : bb[3], bb[0] : bb[2]] = 0 + + A = self.comp_function(img, mask, tag) + self.cache[tag] = A + + return A + + def _affine_file(self, frame, mask, tag): + name, num = tag.split(":") + if name not in self.file_affines: + self._load_file(name) + if name not in self.file_affines: + raise RuntimeError("Error loading file affines for CMC.") + + return self.file_affines[name][int(num) - 1] + + def _affine_sift(self, frame, mask, tag): + A = np.eye(2, 3) + detector = cv2.SIFT_create() + kp, desc = detector.detectAndCompute(frame, mask) + if self.prev_desc is None: + self.prev_desc = [kp, desc] + return A + if desc.shape[0] < self.minimum_features or self.prev_desc[1].shape[0] < self.minimum_features: + return A + + bf = cv2.BFMatcher(cv2.NORM_L2) + matches = bf.knnMatch(self.prev_desc[1], desc, k=2) + good = [] + for m, n in matches: + if m.distance < 0.7 * n.distance: + good.append(m) + + if len(good) > self.minimum_features: + src_pts = np.float32([self.prev_desc[0][m.queryIdx].pt for m in good]).reshape(-1, 1, 2) + dst_pts = np.float32([kp[m.trainIdx].pt for m in good]).reshape(-1, 1, 2) + A, _ = cv2.estimateAffinePartial2D(src_pts, dst_pts, method=cv2.RANSAC) + else: + print("Warning: not enough matching points") + if A is None: + A = np.eye(2, 3) + + self.prev_desc = [kp, desc] + return A + + def _affine_sparse_flow(self, frame, mask, tag): + # Initialize + A = np.eye(2, 3) + + # find the keypoints + keypoints = cv2.goodFeaturesToTrack(frame, mask=mask, **self.sparse_flow_param) + + # Handle first frame + if self.prev_img is None: + self.prev_img = frame + self.prev_desc = keypoints + return A + + matched_kp, status, err = cv2.calcOpticalFlowPyrLK(self.prev_img, frame, self.prev_desc, None) + matched_kp = matched_kp.reshape(-1, 2) + status = status.reshape(-1) + prev_points = self.prev_desc.reshape(-1, 2) + prev_points = prev_points[status] + curr_points = matched_kp[status] + + # Find rigid matrix + if prev_points.shape[0] > self.minimum_features: + A, _ = cv2.estimateAffinePartial2D(prev_points, curr_points, method=cv2.RANSAC) + else: + print("Warning: not enough matching points") + if A is None: + A = np.eye(2, 3) + + self.prev_img = frame + self.prev_desc = keypoints + return A + + def _load_file(self, name): + affines = [] + with open(self.file_names[name], "r") as fp: + for line in fp: + tokens = [float(f) for f in line.split("\t")[1:7]] + A = np.eye(2, 3) + A[0, 0] = tokens[0] + A[0, 1] = tokens[1] + A[0, 2] = tokens[2] + A[1, 0] = tokens[3] + A[1, 1] = tokens[4] + A[1, 2] = tokens[5] + affines.append(A) + self.file_affines[name] = affines + + def dump_cache(self): + return + with open(self.cache_path, "wb") as fp: + pickle.dump(self.cache, fp) diff --git a/trackers/integrated_ocsort_embedding/embedding.py b/trackers/integrated_ocsort_embedding/embedding.py new file mode 100644 index 0000000000000000000000000000000000000000..f5a6c65ff75db94600a90ffed9f98095b2f084c7 --- /dev/null +++ b/trackers/integrated_ocsort_embedding/embedding.py @@ -0,0 +1,201 @@ +from collections import OrderedDict +from pathlib import Path +import os +import pickle + +import cv2 +import numpy as np + + +class EmbeddingComputer: + def __init__(self, dataset, test_dataset, grid_off, max_batch=1024): + self.model = None + self.dataset = dataset + self.test_dataset = test_dataset + self.crop_size = (128, 384) + os.makedirs("./cache/embeddings/", exist_ok=True) + self.cache_path = "./cache/embeddings/{}_embedding.pkl" + self.cache = {} + self.cache_name = "" + self.grid_off = grid_off + self.max_batch = max_batch + + # Only used for the general ReID model (not FastReID) + self.normalize = False + + def load_cache(self, path): + self.cache_name = path + cache_path = self.cache_path.format(path) + if os.path.exists(cache_path): + with open(cache_path, "rb") as fp: + self.cache = pickle.load(fp) + + def get_horizontal_split_patches(self, image, bbox, tag, idx, viz=False): + if isinstance(image, np.ndarray): + h, w = image.shape[:2] + else: + h, w = image.shape[2:] + + bbox = np.array(bbox) + bbox = bbox.astype(np.int) + if bbox[0] < 0 or bbox[1] < 0 or bbox[2] > w or bbox[3] > h: + # Faulty Patch Correction + bbox[0] = np.clip(bbox[0], 0, None) + bbox[1] = np.clip(bbox[1], 0, None) + bbox[2] = np.clip(bbox[2], 0, image.shape[1]) + bbox[3] = np.clip(bbox[3], 0, image.shape[0]) + + x1, y1, x2, y2 = bbox + w = x2 - x1 + h = y2 - y1 + ### TODO - Write a generalized split logic + split_boxes = [ + [x1, y1, x1 + w, y1 + h / 3], + [x1, y1 + h / 3, x1 + w, y1 + (2 / 3) * h], + [x1, y1 + (2 / 3) * h, x1 + w, y1 + h], + ] + + split_boxes = np.array(split_boxes, dtype="int") + patches = [] + # breakpoint() + for ix, patch_coords in enumerate(split_boxes): + if isinstance(image, np.ndarray): + im1 = image[patch_coords[1] : patch_coords[3], patch_coords[0] : patch_coords[2], :] + + if viz: ## TODO - change it from torch tensor to numpy array + dirs = "./viz/{}/{}".format(tag.split(":")[0], tag.split(":")[1]) + Path(dirs).mkdir(parents=True, exist_ok=True) + cv2.imwrite( + os.path.join(dirs, "{}_{}.png".format(idx, ix)), + im1.squeeze(0).permute(1, 2, 0).detach().cpu().numpy() * 255, + ) + patch = cv2.cvtColor(im1, cv2.COLOR_BGR2RGB) + patch = cv2.resize(patch, self.crop_size, interpolation=cv2.INTER_LINEAR) + patch = torch.as_tensor(patch.astype("float32").transpose(2, 0, 1)) + patch = patch.unsqueeze(0) + # print("test ", patch.shape) + patches.append(patch) + else: + im1 = image[:, :, patch_coords[1] : patch_coords[3], patch_coords[0] : patch_coords[2]] + patch = torchvision.transforms.functional.resize(im1, (256, 128)) + patches.append(patch) + + patches = torch.cat(patches, dim=0) + + # print("Patches shape ", patches.shape) + # patches = np.array(patches) + # print("ALL SPLIT PATCHES SHAPE - ", patches.shape) + + return patches + + def compute_embedding(self, img, bbox, tag): + if self.cache_name != tag.split(":")[0]: + self.load_cache(tag.split(":")[0]) + + if tag in self.cache: + embs = self.cache[tag] + if embs.shape[0] != bbox.shape[0]: + raise RuntimeError( + "ERROR: The number of cached embeddings don't match the " + "number of detections.\nWas the detector model changed? Delete cache if so." + ) + return embs + + if self.model is None: + self.initialize_model() + + # Generate all of the patches + crops = [] + if self.grid_off: + # Basic embeddings + h, w = img.shape[:2] + results = np.round(bbox).astype(np.int32) + results[:, 0] = results[:, 0].clip(0, w) + results[:, 1] = results[:, 1].clip(0, h) + results[:, 2] = results[:, 2].clip(0, w) + results[:, 3] = results[:, 3].clip(0, h) + + crops = [] + for p in results: + crop = img[p[1] : p[3], p[0] : p[2]] + crop = cv2.cvtColor(crop, cv2.COLOR_BGR2RGB) + crop = cv2.resize(crop, self.crop_size, interpolation=cv2.INTER_LINEAR).astype(np.float32) + if self.normalize: + crop /= 255 + crop -= np.array((0.485, 0.456, 0.406)) + crop /= np.array((0.229, 0.224, 0.225)) + crop = torch.as_tensor(crop.transpose(2, 0, 1)) + crop = crop.unsqueeze(0) + crops.append(crop) + else: + # Grid patch embeddings + for idx, box in enumerate(bbox): + crop = self.get_horizontal_split_patches(img, box, tag, idx) + crops.append(crop) + crops = torch.cat(crops, dim=0) + + # Create embeddings and l2 normalize them + embs = [] + for idx in range(0, len(crops), self.max_batch): + batch_crops = crops[idx : idx + self.max_batch] + batch_crops = batch_crops.cuda() + with torch.no_grad(): + batch_embs = self.model(batch_crops) + embs.extend(batch_embs) + embs = torch.stack(embs) + embs = torch.nn.functional.normalize(embs, dim=-1) + + if not self.grid_off: + embs = embs.reshape(bbox.shape[0], -1, embs.shape[-1]) + embs = embs.cpu().numpy() + + self.cache[tag] = embs + return embs + + def initialize_model(self): + if self.dataset == "mot17": + if self.test_dataset: + path = "external/weights/mot17_sbs_S50.pth" + else: + return self._get_general_model() + elif self.dataset == "mot20": + if self.test_dataset: + path = "external/weights/mot20_sbs_S50.pth" + else: + return self._get_general_model() + elif self.dataset == "dance": + path = "external/weights/dance_sbs_S50.pth" + else: + raise RuntimeError("Need the path for a new ReID model.") + + model = FastReID(path) + model.eval() + model.cuda() + model.half() + self.model = model + + def _get_general_model(self): + """Used for the half-val for MOT17/20. + + The MOT17/20 SBS models are trained over the half-val we + evaluate on as well. Instead we use a different model for + validation. + """ + model = torchreid.models.build_model(name="osnet_ain_x1_0", num_classes=2510, loss="softmax", pretrained=False) + sd = torch.load("external/weights/osnet_ain_ms_d_c.pth.tar")["state_dict"] + new_state_dict = OrderedDict() + for k, v in sd.items(): + name = k[7:] # remove `module.` + new_state_dict[name] = v + # load params + model.load_state_dict(new_state_dict) + model.eval() + model.cuda() + self.model = model + self.crop_size = (128, 256) + self.normalize = True + + def dump_cache(self): + if self.cache_name: + with open(self.cache_path.format(self.cache_name), "wb") as fp: + pickle.dump(self.cache, fp) diff --git a/trackers/integrated_ocsort_embedding/kalmanfilter.py b/trackers/integrated_ocsort_embedding/kalmanfilter.py new file mode 100644 index 0000000000000000000000000000000000000000..65412e13fdee46179ec878a83d0d59e92ba29279 --- /dev/null +++ b/trackers/integrated_ocsort_embedding/kalmanfilter.py @@ -0,0 +1,1646 @@ +# -*- coding: utf-8 -*- +# pylint: disable=invalid-name, too-many-arguments, too-many-branches, +# pylint: disable=too-many-locals, too-many-instance-attributes, too-many-lines + +""" +This module implements the linear Kalman filter in both an object +oriented and procedural form. The KalmanFilter class implements +the filter by storing the various matrices in instance variables, +minimizing the amount of bookkeeping you have to do. +All Kalman filters operate with a predict->update cycle. The +predict step, implemented with the method or function predict(), +uses the state transition matrix F to predict the state in the next +time period (epoch). The state is stored as a gaussian (x, P), where +x is the state (column) vector, and P is its covariance. Covariance +matrix Q specifies the process covariance. In Bayesian terms, this +prediction is called the *prior*, which you can think of colloquially +as the estimate prior to incorporating the measurement. +The update step, implemented with the method or function `update()`, +incorporates the measurement z with covariance R, into the state +estimate (x, P). The class stores the system uncertainty in S, +the innovation (residual between prediction and measurement in +measurement space) in y, and the Kalman gain in k. The procedural +form returns these variables to you. In Bayesian terms this computes +the *posterior* - the estimate after the information from the +measurement is incorporated. +Whether you use the OO form or procedural form is up to you. If +matrices such as H, R, and F are changing each epoch, you'll probably +opt to use the procedural form. If they are unchanging, the OO +form is perhaps easier to use since you won't need to keep track +of these matrices. This is especially useful if you are implementing +banks of filters or comparing various KF designs for performance; +a trivial coding bug could lead to using the wrong sets of matrices. +This module also offers an implementation of the RTS smoother, and +other helper functions, such as log likelihood computations. +The Saver class allows you to easily save the state of the +KalmanFilter class after every update +This module expects NumPy arrays for all values that expect +arrays, although in a few cases, particularly method parameters, +it will accept types that convert to NumPy arrays, such as lists +of lists. These exceptions are documented in the method or function. +Examples +-------- +The following example constructs a constant velocity kinematic +filter, filters noisy data, and plots the results. It also demonstrates +using the Saver class to save the state of the filter at each epoch. +.. code-block:: Python + import matplotlib.pyplot as plt + import numpy as np + from filterpy.kalman import KalmanFilter + from filterpy.common import Q_discrete_white_noise, Saver + r_std, q_std = 2., 0.003 + cv = KalmanFilter(dim_x=2, dim_z=1) + cv.x = np.array([[0., 1.]]) # position, velocity + cv.F = np.array([[1, dt],[ [0, 1]]) + cv.R = np.array([[r_std^^2]]) + f.H = np.array([[1., 0.]]) + f.P = np.diag([.1^^2, .03^^2) + f.Q = Q_discrete_white_noise(2, dt, q_std**2) + saver = Saver(cv) + for z in range(100): + cv.predict() + cv.update([z + randn() * r_std]) + saver.save() # save the filter's state + saver.to_array() + plt.plot(saver.x[:, 0]) + # plot all of the priors + plt.plot(saver.x_prior[:, 0]) + # plot mahalanobis distance + plt.figure() + plt.plot(saver.mahalanobis) +This code implements the same filter using the procedural form + x = np.array([[0., 1.]]) # position, velocity + F = np.array([[1, dt],[ [0, 1]]) + R = np.array([[r_std^^2]]) + H = np.array([[1., 0.]]) + P = np.diag([.1^^2, .03^^2) + Q = Q_discrete_white_noise(2, dt, q_std**2) + for z in range(100): + x, P = predict(x, P, F=F, Q=Q) + x, P = update(x, P, z=[z + randn() * r_std], R=R, H=H) + xs.append(x[0, 0]) + plt.plot(xs) +For more examples see the test subdirectory, or refer to the +book cited below. In it I both teach Kalman filtering from basic +principles, and teach the use of this library in great detail. +FilterPy library. +http://github.com/rlabbe/filterpy +Documentation at: +https://filterpy.readthedocs.org +Supporting book at: +https://github.com/rlabbe/Kalman-and-Bayesian-Filters-in-Python +This is licensed under an MIT license. See the readme.MD file +for more information. +Copyright 2014-2018 Roger R Labbe Jr. +""" + +from __future__ import absolute_import, division + +import pdb +from copy import deepcopy +from math import log, exp, sqrt +import sys +import numpy as np +from numpy import dot, zeros, eye, isscalar, shape +import numpy.linalg as linalg +from filterpy.stats import logpdf +from filterpy.common import pretty_str, reshape_z + + +class KalmanFilterNew(object): + """Implements a Kalman filter. You are responsible for setting the + various state variables to reasonable values; the defaults will + not give you a functional filter. + For now the best documentation is my free book Kalman and Bayesian + Filters in Python [2]_. The test files in this directory also give you a + basic idea of use, albeit without much description. + In brief, you will first construct this object, specifying the size of + the state vector with dim_x and the size of the measurement vector that + you will be using with dim_z. These are mostly used to perform size checks + when you assign values to the various matrices. For example, if you + specified dim_z=2 and then try to assign a 3x3 matrix to R (the + measurement noise matrix you will get an assert exception because R + should be 2x2. (If for whatever reason you need to alter the size of + things midstream just use the underscore version of the matrices to + assign directly: your_filter._R = a_3x3_matrix.) + After construction the filter will have default matrices created for you, + but you must specify the values for each. It’s usually easiest to just + overwrite them rather than assign to each element yourself. This will be + clearer in the example below. All are of type numpy.array. + Examples + -------- + Here is a filter that tracks position and velocity using a sensor that only + reads position. + First construct the object with the required dimensionality. Here the state + (`dim_x`) has 2 coefficients (position and velocity), and the measurement + (`dim_z`) has one. In FilterPy `x` is the state, `z` is the measurement. + .. code:: + from filterpy.kalman import KalmanFilter + f = KalmanFilter (dim_x=2, dim_z=1) + Assign the initial value for the state (position and velocity). You can do this + with a two dimensional array like so: + .. code:: + f.x = np.array([[2.], # position + [0.]]) # velocity + or just use a one dimensional array, which I prefer doing. + .. code:: + f.x = np.array([2., 0.]) + Define the state transition matrix: + .. code:: + f.F = np.array([[1.,1.], + [0.,1.]]) + Define the measurement function. Here we need to convert a position-velocity + vector into just a position vector, so we use: + .. code:: + f.H = np.array([[1., 0.]]) + Define the state's covariance matrix P. + .. code:: + f.P = np.array([[1000., 0.], + [ 0., 1000.] ]) + Now assign the measurement noise. Here the dimension is 1x1, so I can + use a scalar + .. code:: + f.R = 5 + I could have done this instead: + .. code:: + f.R = np.array([[5.]]) + Note that this must be a 2 dimensional array. + Finally, I will assign the process noise. Here I will take advantage of + another FilterPy library function: + .. code:: + from filterpy.common import Q_discrete_white_noise + f.Q = Q_discrete_white_noise(dim=2, dt=0.1, var=0.13) + Now just perform the standard predict/update loop: + .. code:: + while some_condition_is_true: + z = get_sensor_reading() + f.predict() + f.update(z) + do_something_with_estimate (f.x) + **Procedural Form** + This module also contains stand alone functions to perform Kalman filtering. + Use these if you are not a fan of objects. + **Example** + .. code:: + while True: + z, R = read_sensor() + x, P = predict(x, P, F, Q) + x, P = update(x, P, z, R, H) + See my book Kalman and Bayesian Filters in Python [2]_. + You will have to set the following attributes after constructing this + object for the filter to perform properly. Please note that there are + various checks in place to ensure that you have made everything the + 'correct' size. However, it is possible to provide incorrectly sized + arrays such that the linear algebra can not perform an operation. + It can also fail silently - you can end up with matrices of a size that + allows the linear algebra to work, but are the wrong shape for the problem + you are trying to solve. + Parameters + ---------- + dim_x : int + Number of state variables for the Kalman filter. For example, if + you are tracking the position and velocity of an object in two + dimensions, dim_x would be 4. + This is used to set the default size of P, Q, and u + dim_z : int + Number of of measurement inputs. For example, if the sensor + provides you with position in (x,y), dim_z would be 2. + dim_u : int (optional) + size of the control input, if it is being used. + Default value of 0 indicates it is not used. + compute_log_likelihood : bool (default = True) + Computes log likelihood by default, but this can be a slow + computation, so if you never use it you can turn this computation + off. + Attributes + ---------- + x : numpy.array(dim_x, 1) + Current state estimate. Any call to update() or predict() updates + this variable. + P : numpy.array(dim_x, dim_x) + Current state covariance matrix. Any call to update() or predict() + updates this variable. + x_prior : numpy.array(dim_x, 1) + Prior (predicted) state estimate. The *_prior and *_post attributes + are for convenience; they store the prior and posterior of the + current epoch. Read Only. + P_prior : numpy.array(dim_x, dim_x) + Prior (predicted) state covariance matrix. Read Only. + x_post : numpy.array(dim_x, 1) + Posterior (updated) state estimate. Read Only. + P_post : numpy.array(dim_x, dim_x) + Posterior (updated) state covariance matrix. Read Only. + z : numpy.array + Last measurement used in update(). Read only. + R : numpy.array(dim_z, dim_z) + Measurement noise covariance matrix. Also known as the + observation covariance. + Q : numpy.array(dim_x, dim_x) + Process noise covariance matrix. Also known as the transition + covariance. + F : numpy.array() + State Transition matrix. Also known as `A` in some formulation. + H : numpy.array(dim_z, dim_x) + Measurement function. Also known as the observation matrix, or as `C`. + y : numpy.array + Residual of the update step. Read only. + K : numpy.array(dim_x, dim_z) + Kalman gain of the update step. Read only. + S : numpy.array + System uncertainty (P projected to measurement space). Read only. + SI : numpy.array + Inverse system uncertainty. Read only. + log_likelihood : float + log-likelihood of the last measurement. Read only. + likelihood : float + likelihood of last measurement. Read only. + Computed from the log-likelihood. The log-likelihood can be very + small, meaning a large negative value such as -28000. Taking the + exp() of that results in 0.0, which can break typical algorithms + which multiply by this value, so by default we always return a + number >= sys.float_info.min. + mahalanobis : float + mahalanobis distance of the innovation. Read only. + inv : function, default numpy.linalg.inv + If you prefer another inverse function, such as the Moore-Penrose + pseudo inverse, set it to that instead: kf.inv = np.linalg.pinv + This is only used to invert self.S. If you know it is diagonal, you + might choose to set it to filterpy.common.inv_diagonal, which is + several times faster than numpy.linalg.inv for diagonal matrices. + alpha : float + Fading memory setting. 1.0 gives the normal Kalman filter, and + values slightly larger than 1.0 (such as 1.02) give a fading + memory effect - previous measurements have less influence on the + filter's estimates. This formulation of the Fading memory filter + (there are many) is due to Dan Simon [1]_. + References + ---------- + .. [1] Dan Simon. "Optimal State Estimation." John Wiley & Sons. + p. 208-212. (2006) + .. [2] Roger Labbe. "Kalman and Bayesian Filters in Python" + https://github.com/rlabbe/Kalman-and-Bayesian-Filters-in-Python + """ + + def __init__(self, dim_x, dim_z, dim_u=0): + if dim_x < 1: + raise ValueError("dim_x must be 1 or greater") + if dim_z < 1: + raise ValueError("dim_z must be 1 or greater") + if dim_u < 0: + raise ValueError("dim_u must be 0 or greater") + + self.dim_x = dim_x + self.dim_z = dim_z + self.dim_u = dim_u + + self.x = zeros((dim_x, 1)) # state + self.P = eye(dim_x) # uncertainty covariance + self.Q = eye(dim_x) # process uncertainty + self.B = None # control transition matrix + self.F = eye(dim_x) # state transition matrix + self.H = zeros((dim_z, dim_x)) # measurement function + self.R = eye(dim_z) # measurement uncertainty + self._alpha_sq = 1.0 # fading memory control + self.M = np.zeros((dim_x, dim_z)) # process-measurement cross correlation + self.z = np.array([[None] * self.dim_z]).T + + # gain and residual are computed during the innovation step. We + # save them so that in case you want to inspect them for various + # purposes + self.K = np.zeros((dim_x, dim_z)) # kalman gain + self.y = zeros((dim_z, 1)) + self.S = np.zeros((dim_z, dim_z)) # system uncertainty + self.SI = np.zeros((dim_z, dim_z)) # inverse system uncertainty + + # identity matrix. Do not alter this. + self._I = np.eye(dim_x) + + # these will always be a copy of x,P after predict() is called + self.x_prior = self.x.copy() + self.P_prior = self.P.copy() + + # these will always be a copy of x,P after update() is called + self.x_post = self.x.copy() + self.P_post = self.P.copy() + + # Only computed only if requested via property + self._log_likelihood = log(sys.float_info.min) + self._likelihood = sys.float_info.min + self._mahalanobis = None + + # keep all observations + self.history_obs = [] + + self.inv = np.linalg.inv + + self.attr_saved = None + self.observed = False + self.last_measurement = None + + def predict(self, u=None, B=None, F=None, Q=None): + """ + Predict next state (prior) using the Kalman filter state propagation + equations. + Parameters + ---------- + u : np.array, default 0 + Optional control vector. + B : np.array(dim_x, dim_u), or None + Optional control transition matrix; a value of None + will cause the filter to use `self.B`. + F : np.array(dim_x, dim_x), or None + Optional state transition matrix; a value of None + will cause the filter to use `self.F`. + Q : np.array(dim_x, dim_x), scalar, or None + Optional process noise matrix; a value of None will cause the + filter to use `self.Q`. + """ + + if B is None: + B = self.B + if F is None: + F = self.F + if Q is None: + Q = self.Q + elif isscalar(Q): + Q = eye(self.dim_x) * Q + + # x = Fx + Bu + if B is not None and u is not None: + self.x = dot(F, self.x) + dot(B, u) + else: + self.x = dot(F, self.x) + + # P = FPF' + Q + self.P = self._alpha_sq * dot(dot(F, self.P), F.T) + Q + + # save prior + self.x_prior = self.x.copy() + self.P_prior = self.P.copy() + + def freeze(self): + """ + Save the parameters before non-observation forward + """ + self.attr_saved = deepcopy(self.__dict__) + + def apply_affine_correction(self, m, t, new_kf): + """ + Apply to both last state and last observation for OOS smoothing. + + Messy due to internal logic for kalman filter being messy. + """ + if new_kf: + big_m = np.kron(np.eye(4, dtype=float), m) + self.x = big_m @ self.x + self.x[:2] += t + self.P = big_m @ self.P @ big_m.T + + # If frozen, also need to update the frozen state for OOS + if not self.observed and self.attr_saved is not None: + self.attr_saved["x"] = big_m @ self.attr_saved["x"] + self.attr_saved["x"][:2] += t + self.attr_saved["P"] = big_m @ self.attr_saved["P"] @ big_m.T + self.attr_saved["last_measurement"][:2] = m @ self.attr_saved["last_measurement"][:2] + t + self.attr_saved["last_measurement"][2:] = m @ self.attr_saved["last_measurement"][2:] + else: + scale = np.linalg.norm(m[:, 0]) + self.x[:2] = m @ self.x[:2] + t + self.x[4:6] = m @ self.x[4:6] + # self.x[2] *= scale + # self.x[6] *= scale + + self.P[:2, :2] = m @ self.P[:2, :2] @ m.T + self.P[4:6, 4:6] = m @ self.P[4:6, 4:6] @ m.T + # self.P[2, 2] *= 2 * scale + # self.P[6, 6] *= 2 * scale + + # If frozen, also need to update the frozen state for OOS + if not self.observed and self.attr_saved is not None: + self.attr_saved["x"][:2] = m @ self.attr_saved["x"][:2] + t + self.attr_saved["x"][4:6] = m @ self.attr_saved["x"][4:6] + # self.attr_saved["x"][2] *= scale + # self.attr_saved["x"][6] *= scale + + self.attr_saved["P"][:2, :2] = m @ self.attr_saved["P"][:2, :2] @ m.T + self.attr_saved["P"][4:6, 4:6] = m @ self.attr_saved["P"][4:6, 4:6] @ m.T + # self.attr_saved["P"][2, 2] *= 2 * scale + # self.attr_saved["P"][6, 6] *= 2 * scale + + self.attr_saved["last_measurement"][:2] = m @ self.attr_saved["last_measurement"][:2] + t + # self.attr_saved["last_measurement"][2] *= scale + + def unfreeze(self, new_kf): + if self.attr_saved is not None: + new_history = deepcopy(self.history_obs) + self.__dict__ = self.attr_saved + # self.history_obs = new_history + self.history_obs = self.history_obs[:-1] + occur = [int(d is None) for d in new_history] + indices = np.where(np.array(occur) == 0)[0] + index1 = indices[-2] + index2 = indices[-1] + # box1 = new_history[index1] + box1 = self.last_measurement + if new_kf: + x1, y1, w1, h1 = box1 + else: + x1, y1, s1, r1 = box1 + w1 = np.sqrt(s1 * r1) + h1 = np.sqrt(s1 / r1) + box2 = new_history[index2] + if new_kf: + x2, y2, w2, h2 = box2 + else: + x2, y2, s2, r2 = box2 + w2 = np.sqrt(s2 * r2) + h2 = np.sqrt(s2 / r2) + time_gap = index2 - index1 + dx = (x2 - x1) / time_gap + dy = (y2 - y1) / time_gap + dw = (w2 - w1) / time_gap + dh = (h2 - h1) / time_gap + for i in range(index2 - index1): + """ + The default virtual trajectory generation is by linear + motion (constant speed hypothesis), you could modify this + part to implement your own. + """ + x = x1 + (i + 1) * dx + y = y1 + (i + 1) * dy + w = w1 + (i + 1) * dw + h = h1 + (i + 1) * dh + if new_kf: + new_box = np.array([x, y, w, h]).reshape((4, 1)) + else: + s = w * h + r = w / float(h) + new_box = np.array([x, y, s, r]).reshape((4, 1)) + """ + I still use predict-update loop here to refresh the parameters, + but this can be faster by directly modifying the internal parameters + as suggested in the paper. I keep this naive but slow way for + easy read and understanding + """ + self.update(new_box) + if not i == (index2 - index1 - 1): + self.predict() + + def update(self, z, R=None, H=None, new_kf=False): + """ + Add a new measurement (z) to the Kalman filter. + If z is None, nothing is computed. However, x_post and P_post are + updated with the prior (x_prior, P_prior), and self.z is set to None. + Parameters + ---------- + z : (dim_z, 1): array_like + measurement for this update. z can be a scalar if dim_z is 1, + otherwise it must be convertible to a column vector. + If you pass in a value of H, z must be a column vector the + of the correct size. + R : np.array, scalar, or None + Optionally provide R to override the measurement noise for this + one call, otherwise self.R will be used. + H : np.array, or None + Optionally provide H to override the measurement function for this + one call, otherwise self.H will be used. + """ + # set to None to force recompute + self._log_likelihood = None + self._likelihood = None + self._mahalanobis = None + + # append the observation + self.history_obs.append(z) + + if z is None: + if self.observed: + """ + Got no observation so freeze the current parameters for future + potential online smoothing. + """ + self.last_measurement = self.history_obs[-2] + self.freeze() + self.observed = False + self.z = np.array([[None] * self.dim_z]).T + self.x_post = self.x.copy() + self.P_post = self.P.copy() + self.y = zeros((self.dim_z, 1)) + return + + # self.observed = True + if not self.observed: + """ + Get observation, use online smoothing to re-update parameters + """ + self.unfreeze(new_kf) + self.observed = True + + if R is None: + R = self.R + elif isscalar(R): + R = eye(self.dim_z) * R + + if H is None: + z = reshape_z(z, self.dim_z, self.x.ndim) + H = self.H + + # y = z - Hx + # error (residual) between measurement and prediction + self.y = z - dot(H, self.x) + + # common subexpression for speed + PHT = dot(self.P, H.T) + + # S = HPH' + R + # project system uncertainty into measurement space + self.S = dot(H, PHT) + R + self.SI = self.inv(self.S) + # K = PH'inv(S) + # map system uncertainty into kalman gain + self.K = dot(PHT, self.SI) + + # x = x + Ky + # predict new x with residual scaled by the kalman gain + self.x = self.x + dot(self.K, self.y) + + # P = (I-KH)P(I-KH)' + KRK' + # This is more numerically stable + # and works for non-optimal K vs the equation + # P = (I-KH)P usually seen in the literature. + + I_KH = self._I - dot(self.K, H) + self.P = dot(dot(I_KH, self.P), I_KH.T) + dot(dot(self.K, R), self.K.T) + + # save measurement and posterior state + self.z = deepcopy(z) + self.x_post = self.x.copy() + self.P_post = self.P.copy() + + def md_for_measurement(self, z): + """Mahalanobis distance for any measurement. + + + self._mahalanobis = sqrt(float(dot(dot(self.y.T, self.SI), self.y))) + + Should be run after a prediction() call. + """ + y = z - self.H @ self.x + md = float(dot(dot(y.T, self.SI), y)) + return md + + def predict_steadystate(self, u=0, B=None): + """ + Predict state (prior) using the Kalman filter state propagation + equations. Only x is updated, P is left unchanged. See + update_steadstate() for a longer explanation of when to use this + method. + Parameters + ---------- + u : np.array + Optional control vector. If non-zero, it is multiplied by B + to create the control input into the system. + B : np.array(dim_x, dim_u), or None + Optional control transition matrix; a value of None + will cause the filter to use `self.B`. + """ + + if B is None: + B = self.B + + # x = Fx + Bu + if B is not None: + self.x = dot(self.F, self.x) + dot(B, u) + else: + self.x = dot(self.F, self.x) + + # save prior + self.x_prior = self.x.copy() + self.P_prior = self.P.copy() + + def update_steadystate(self, z): + """ + Add a new measurement (z) to the Kalman filter without recomputing + the Kalman gain K, the state covariance P, or the system + uncertainty S. + You can use this for LTI systems since the Kalman gain and covariance + converge to a fixed value. Precompute these and assign them explicitly, + or run the Kalman filter using the normal predict()/update(0 cycle + until they converge. + The main advantage of this call is speed. We do significantly less + computation, notably avoiding a costly matrix inversion. + Use in conjunction with predict_steadystate(), otherwise P will grow + without bound. + Parameters + ---------- + z : (dim_z, 1): array_like + measurement for this update. z can be a scalar if dim_z is 1, + otherwise it must be convertible to a column vector. + Examples + -------- + >>> cv = kinematic_kf(dim=3, order=2) # 3D const velocity filter + >>> # let filter converge on representative data, then save k and P + >>> for i in range(100): + >>> cv.predict() + >>> cv.update([i, i, i]) + >>> saved_k = np.copy(cv.K) + >>> saved_P = np.copy(cv.P) + later on: + >>> cv = kinematic_kf(dim=3, order=2) # 3D const velocity filter + >>> cv.K = np.copy(saved_K) + >>> cv.P = np.copy(saved_P) + >>> for i in range(100): + >>> cv.predict_steadystate() + >>> cv.update_steadystate([i, i, i]) + """ + + # set to None to force recompute + self._log_likelihood = None + self._likelihood = None + self._mahalanobis = None + + if z is None: + self.z = np.array([[None] * self.dim_z]).T + self.x_post = self.x.copy() + self.P_post = self.P.copy() + self.y = zeros((self.dim_z, 1)) + return + + z = reshape_z(z, self.dim_z, self.x.ndim) + + # y = z - Hx + # error (residual) between measurement and prediction + self.y = z - dot(self.H, self.x) + + # x = x + Ky + # predict new x with residual scaled by the kalman gain + self.x = self.x + dot(self.K, self.y) + + self.z = deepcopy(z) + self.x_post = self.x.copy() + self.P_post = self.P.copy() + + # set to None to force recompute + self._log_likelihood = None + self._likelihood = None + self._mahalanobis = None + + def update_correlated(self, z, R=None, H=None): + """Add a new measurement (z) to the Kalman filter assuming that + process noise and measurement noise are correlated as defined in + the `self.M` matrix. + A partial derivation can be found in [1] + If z is None, nothing is changed. + Parameters + ---------- + z : (dim_z, 1): array_like + measurement for this update. z can be a scalar if dim_z is 1, + otherwise it must be convertible to a column vector. + R : np.array, scalar, or None + Optionally provide R to override the measurement noise for this + one call, otherwise self.R will be used. + H : np.array, or None + Optionally provide H to override the measurement function for this + one call, otherwise self.H will be used. + References + ---------- + .. [1] Bulut, Y. (2011). Applied Kalman filter theory (Doctoral dissertation, Northeastern University). + http://people.duke.edu/~hpgavin/SystemID/References/Balut-KalmanFilter-PhD-NEU-2011.pdf + """ + + # set to None to force recompute + self._log_likelihood = None + self._likelihood = None + self._mahalanobis = None + + if z is None: + self.z = np.array([[None] * self.dim_z]).T + self.x_post = self.x.copy() + self.P_post = self.P.copy() + self.y = zeros((self.dim_z, 1)) + return + + if R is None: + R = self.R + elif isscalar(R): + R = eye(self.dim_z) * R + + # rename for readability and a tiny extra bit of speed + if H is None: + z = reshape_z(z, self.dim_z, self.x.ndim) + H = self.H + + # handle special case: if z is in form [[z]] but x is not a column + # vector dimensions will not match + if self.x.ndim == 1 and shape(z) == (1, 1): + z = z[0] + + if shape(z) == (): # is it scalar, e.g. z=3 or z=np.array(3) + z = np.asarray([z]) + + # y = z - Hx + # error (residual) between measurement and prediction + self.y = z - dot(H, self.x) + + # common subexpression for speed + PHT = dot(self.P, H.T) + + # project system uncertainty into measurement space + self.S = dot(H, PHT) + dot(H, self.M) + dot(self.M.T, H.T) + R + self.SI = self.inv(self.S) + + # K = PH'inv(S) + # map system uncertainty into kalman gain + self.K = dot(PHT + self.M, self.SI) + + # x = x + Ky + # predict new x with residual scaled by the kalman gain + self.x = self.x + dot(self.K, self.y) + self.P = self.P - dot(self.K, dot(H, self.P) + self.M.T) + + self.z = deepcopy(z) + self.x_post = self.x.copy() + self.P_post = self.P.copy() + + def batch_filter( + self, + zs, + Fs=None, + Qs=None, + Hs=None, + Rs=None, + Bs=None, + us=None, + update_first=False, + saver=None, + ): + """Batch processes a sequences of measurements. + Parameters + ---------- + zs : list-like + list of measurements at each time step `self.dt`. Missing + measurements must be represented by `None`. + Fs : None, list-like, default=None + optional value or list of values to use for the state transition + matrix F. + If Fs is None then self.F is used for all epochs. + Otherwise it must contain a list-like list of F's, one for + each epoch. This allows you to have varying F per epoch. + Qs : None, np.array or list-like, default=None + optional value or list of values to use for the process error + covariance Q. + If Qs is None then self.Q is used for all epochs. + Otherwise it must contain a list-like list of Q's, one for + each epoch. This allows you to have varying Q per epoch. + Hs : None, np.array or list-like, default=None + optional list of values to use for the measurement matrix H. + If Hs is None then self.H is used for all epochs. + If Hs contains a single matrix, then it is used as H for all + epochs. + Otherwise it must contain a list-like list of H's, one for + each epoch. This allows you to have varying H per epoch. + Rs : None, np.array or list-like, default=None + optional list of values to use for the measurement error + covariance R. + If Rs is None then self.R is used for all epochs. + Otherwise it must contain a list-like list of R's, one for + each epoch. This allows you to have varying R per epoch. + Bs : None, np.array or list-like, default=None + optional list of values to use for the control transition matrix B. + If Bs is None then self.B is used for all epochs. + Otherwise it must contain a list-like list of B's, one for + each epoch. This allows you to have varying B per epoch. + us : None, np.array or list-like, default=None + optional list of values to use for the control input vector; + If us is None then None is used for all epochs (equivalent to 0, + or no control input). + Otherwise it must contain a list-like list of u's, one for + each epoch. + update_first : bool, optional, default=False + controls whether the order of operations is update followed by + predict, or predict followed by update. Default is predict->update. + saver : filterpy.common.Saver, optional + filterpy.common.Saver object. If provided, saver.save() will be + called after every epoch + Returns + ------- + means : np.array((n,dim_x,1)) + array of the state for each time step after the update. Each entry + is an np.array. In other words `means[k,:]` is the state at step + `k`. + covariance : np.array((n,dim_x,dim_x)) + array of the covariances for each time step after the update. + In other words `covariance[k,:,:]` is the covariance at step `k`. + means_predictions : np.array((n,dim_x,1)) + array of the state for each time step after the predictions. Each + entry is an np.array. In other words `means[k,:]` is the state at + step `k`. + covariance_predictions : np.array((n,dim_x,dim_x)) + array of the covariances for each time step after the prediction. + In other words `covariance[k,:,:]` is the covariance at step `k`. + Examples + -------- + .. code-block:: Python + # this example demonstrates tracking a measurement where the time + # between measurement varies, as stored in dts. This requires + # that F be recomputed for each epoch. The output is then smoothed + # with an RTS smoother. + zs = [t + random.randn()*4 for t in range (40)] + Fs = [np.array([[1., dt], [0, 1]] for dt in dts] + (mu, cov, _, _) = kf.batch_filter(zs, Fs=Fs) + (xs, Ps, Ks, Pps) = kf.rts_smoother(mu, cov, Fs=Fs) + """ + + # pylint: disable=too-many-statements + n = np.size(zs, 0) + if Fs is None: + Fs = [self.F] * n + if Qs is None: + Qs = [self.Q] * n + if Hs is None: + Hs = [self.H] * n + if Rs is None: + Rs = [self.R] * n + if Bs is None: + Bs = [self.B] * n + if us is None: + us = [0] * n + + # mean estimates from Kalman Filter + if self.x.ndim == 1: + means = zeros((n, self.dim_x)) + means_p = zeros((n, self.dim_x)) + else: + means = zeros((n, self.dim_x, 1)) + means_p = zeros((n, self.dim_x, 1)) + + # state covariances from Kalman Filter + covariances = zeros((n, self.dim_x, self.dim_x)) + covariances_p = zeros((n, self.dim_x, self.dim_x)) + + if update_first: + for i, (z, F, Q, H, R, B, u) in enumerate(zip(zs, Fs, Qs, Hs, Rs, Bs, us)): + + self.update(z, R=R, H=H) + means[i, :] = self.x + covariances[i, :, :] = self.P + + self.predict(u=u, B=B, F=F, Q=Q) + means_p[i, :] = self.x + covariances_p[i, :, :] = self.P + + if saver is not None: + saver.save() + else: + for i, (z, F, Q, H, R, B, u) in enumerate(zip(zs, Fs, Qs, Hs, Rs, Bs, us)): + + self.predict(u=u, B=B, F=F, Q=Q) + means_p[i, :] = self.x + covariances_p[i, :, :] = self.P + + self.update(z, R=R, H=H) + means[i, :] = self.x + covariances[i, :, :] = self.P + + if saver is not None: + saver.save() + + return (means, covariances, means_p, covariances_p) + + def rts_smoother(self, Xs, Ps, Fs=None, Qs=None, inv=np.linalg.inv): + """ + Runs the Rauch-Tung-Striebel Kalman smoother on a set of + means and covariances computed by a Kalman filter. The usual input + would come from the output of `KalmanFilter.batch_filter()`. + Parameters + ---------- + Xs : numpy.array + array of the means (state variable x) of the output of a Kalman + filter. + Ps : numpy.array + array of the covariances of the output of a kalman filter. + Fs : list-like collection of numpy.array, optional + State transition matrix of the Kalman filter at each time step. + Optional, if not provided the filter's self.F will be used + Qs : list-like collection of numpy.array, optional + Process noise of the Kalman filter at each time step. Optional, + if not provided the filter's self.Q will be used + inv : function, default numpy.linalg.inv + If you prefer another inverse function, such as the Moore-Penrose + pseudo inverse, set it to that instead: kf.inv = np.linalg.pinv + Returns + ------- + x : numpy.ndarray + smoothed means + P : numpy.ndarray + smoothed state covariances + K : numpy.ndarray + smoother gain at each step + Pp : numpy.ndarray + Predicted state covariances + Examples + -------- + .. code-block:: Python + zs = [t + random.randn()*4 for t in range (40)] + (mu, cov, _, _) = kalman.batch_filter(zs) + (x, P, K, Pp) = rts_smoother(mu, cov, kf.F, kf.Q) + """ + + if len(Xs) != len(Ps): + raise ValueError("length of Xs and Ps must be the same") + + n = Xs.shape[0] + dim_x = Xs.shape[1] + + if Fs is None: + Fs = [self.F] * n + if Qs is None: + Qs = [self.Q] * n + + # smoother gain + K = zeros((n, dim_x, dim_x)) + + x, P, Pp = Xs.copy(), Ps.copy(), Ps.copy() + for k in range(n - 2, -1, -1): + Pp[k] = dot(dot(Fs[k + 1], P[k]), Fs[k + 1].T) + Qs[k + 1] + + # pylint: disable=bad-whitespace + K[k] = dot(dot(P[k], Fs[k + 1].T), inv(Pp[k])) + x[k] += dot(K[k], x[k + 1] - dot(Fs[k + 1], x[k])) + P[k] += dot(dot(K[k], P[k + 1] - Pp[k]), K[k].T) + + return (x, P, K, Pp) + + def get_prediction(self, u=None, B=None, F=None, Q=None): + """ + Predict next state (prior) using the Kalman filter state propagation + equations and returns it without modifying the object. + Parameters + ---------- + u : np.array, default 0 + Optional control vector. + B : np.array(dim_x, dim_u), or None + Optional control transition matrix; a value of None + will cause the filter to use `self.B`. + F : np.array(dim_x, dim_x), or None + Optional state transition matrix; a value of None + will cause the filter to use `self.F`. + Q : np.array(dim_x, dim_x), scalar, or None + Optional process noise matrix; a value of None will cause the + filter to use `self.Q`. + Returns + ------- + (x, P) : tuple + State vector and covariance array of the prediction. + """ + + if B is None: + B = self.B + if F is None: + F = self.F + if Q is None: + Q = self.Q + elif isscalar(Q): + Q = eye(self.dim_x) * Q + + # x = Fx + Bu + if B is not None and u is not None: + x = dot(F, self.x) + dot(B, u) + else: + x = dot(F, self.x) + + # P = FPF' + Q + P = self._alpha_sq * dot(dot(F, self.P), F.T) + Q + + return x, P + + def get_update(self, z=None): + """ + Computes the new estimate based on measurement `z` and returns it + without altering the state of the filter. + Parameters + ---------- + z : (dim_z, 1): array_like + measurement for this update. z can be a scalar if dim_z is 1, + otherwise it must be convertible to a column vector. + Returns + ------- + (x, P) : tuple + State vector and covariance array of the update. + """ + + if z is None: + return self.x, self.P + z = reshape_z(z, self.dim_z, self.x.ndim) + + R = self.R + H = self.H + P = self.P + x = self.x + + # error (residual) between measurement and prediction + y = z - dot(H, x) + + # common subexpression for speed + PHT = dot(P, H.T) + + # project system uncertainty into measurement space + S = dot(H, PHT) + R + + # map system uncertainty into kalman gain + K = dot(PHT, self.inv(S)) + + # predict new x with residual scaled by the kalman gain + x = x + dot(K, y) + + # P = (I-KH)P(I-KH)' + KRK' + I_KH = self._I - dot(K, H) + P = dot(dot(I_KH, P), I_KH.T) + dot(dot(K, R), K.T) + + return x, P + + def residual_of(self, z): + """ + Returns the residual for the given measurement (z). Does not alter + the state of the filter. + """ + z = reshape_z(z, self.dim_z, self.x.ndim) + return z - dot(self.H, self.x_prior) + + def measurement_of_state(self, x): + """ + Helper function that converts a state into a measurement. + Parameters + ---------- + x : np.array + kalman state vector + Returns + ------- + z : (dim_z, 1): array_like + measurement for this update. z can be a scalar if dim_z is 1, + otherwise it must be convertible to a column vector. + """ + + return dot(self.H, x) + + @property + def log_likelihood(self): + """ + log-likelihood of the last measurement. + """ + if self._log_likelihood is None: + self._log_likelihood = logpdf(x=self.y, cov=self.S) + return self._log_likelihood + + @property + def likelihood(self): + """ + Computed from the log-likelihood. The log-likelihood can be very + small, meaning a large negative value such as -28000. Taking the + exp() of that results in 0.0, which can break typical algorithms + which multiply by this value, so by default we always return a + number >= sys.float_info.min. + """ + if self._likelihood is None: + self._likelihood = exp(self.log_likelihood) + if self._likelihood == 0: + self._likelihood = sys.float_info.min + return self._likelihood + + @property + def mahalanobis(self): + """ " + Mahalanobis distance of measurement. E.g. 3 means measurement + was 3 standard deviations away from the predicted value. + Returns + ------- + mahalanobis : float + """ + if self._mahalanobis is None: + self._mahalanobis = sqrt(float(dot(dot(self.y.T, self.SI), self.y))) + return self._mahalanobis + + @property + def alpha(self): + """ + Fading memory setting. 1.0 gives the normal Kalman filter, and + values slightly larger than 1.0 (such as 1.02) give a fading + memory effect - previous measurements have less influence on the + filter's estimates. This formulation of the Fading memory filter + (there are many) is due to Dan Simon [1]_. + """ + return self._alpha_sq**0.5 + + def log_likelihood_of(self, z): + """ + log likelihood of the measurement `z`. This should only be called + after a call to update(). Calling after predict() will yield an + incorrect result.""" + + if z is None: + return log(sys.float_info.min) + return logpdf(z, dot(self.H, self.x), self.S) + + @alpha.setter + def alpha(self, value): + if not np.isscalar(value) or value < 1: + raise ValueError("alpha must be a float greater than 1") + + self._alpha_sq = value**2 + + def __repr__(self): + return "\n".join( + [ + "KalmanFilter object", + pretty_str("dim_x", self.dim_x), + pretty_str("dim_z", self.dim_z), + pretty_str("dim_u", self.dim_u), + pretty_str("x", self.x), + pretty_str("P", self.P), + pretty_str("x_prior", self.x_prior), + pretty_str("P_prior", self.P_prior), + pretty_str("x_post", self.x_post), + pretty_str("P_post", self.P_post), + pretty_str("F", self.F), + pretty_str("Q", self.Q), + pretty_str("R", self.R), + pretty_str("H", self.H), + pretty_str("K", self.K), + pretty_str("y", self.y), + pretty_str("S", self.S), + pretty_str("SI", self.SI), + pretty_str("M", self.M), + pretty_str("B", self.B), + pretty_str("z", self.z), + pretty_str("log-likelihood", self.log_likelihood), + pretty_str("likelihood", self.likelihood), + pretty_str("mahalanobis", self.mahalanobis), + pretty_str("alpha", self.alpha), + pretty_str("inv", self.inv), + ] + ) + + def test_matrix_dimensions(self, z=None, H=None, R=None, F=None, Q=None): + """ + Performs a series of asserts to check that the size of everything + is what it should be. This can help you debug problems in your design. + If you pass in H, R, F, Q those will be used instead of this object's + value for those matrices. + Testing `z` (the measurement) is problamatic. x is a vector, and can be + implemented as either a 1D array or as a nx1 column vector. Thus Hx + can be of different shapes. Then, if Hx is a single value, it can + be either a 1D array or 2D vector. If either is true, z can reasonably + be a scalar (either '3' or np.array('3') are scalars under this + definition), a 1D, 1 element array, or a 2D, 1 element array. You are + allowed to pass in any combination that works. + """ + + if H is None: + H = self.H + if R is None: + R = self.R + if F is None: + F = self.F + if Q is None: + Q = self.Q + x = self.x + P = self.P + + assert x.ndim == 1 or x.ndim == 2, "x must have one or two dimensions, but has {}".format(x.ndim) + + if x.ndim == 1: + assert x.shape[0] == self.dim_x, "Shape of x must be ({},{}), but is {}".format(self.dim_x, 1, x.shape) + else: + assert x.shape == ( + self.dim_x, + 1, + ), "Shape of x must be ({},{}), but is {}".format(self.dim_x, 1, x.shape) + + assert P.shape == ( + self.dim_x, + self.dim_x, + ), "Shape of P must be ({},{}), but is {}".format(self.dim_x, self.dim_x, P.shape) + + assert Q.shape == ( + self.dim_x, + self.dim_x, + ), "Shape of Q must be ({},{}), but is {}".format(self.dim_x, self.dim_x, P.shape) + + assert F.shape == ( + self.dim_x, + self.dim_x, + ), "Shape of F must be ({},{}), but is {}".format(self.dim_x, self.dim_x, F.shape) + + assert np.ndim(H) == 2, "Shape of H must be (dim_z, {}), but is {}".format(P.shape[0], shape(H)) + + assert H.shape[1] == P.shape[0], "Shape of H must be (dim_z, {}), but is {}".format(P.shape[0], H.shape) + + # shape of R must be the same as HPH' + hph_shape = (H.shape[0], H.shape[0]) + r_shape = shape(R) + + if H.shape[0] == 1: + # r can be scalar, 1D, or 2D in this case + assert r_shape in [ + (), + (1,), + (1, 1), + ], "R must be scalar or one element array, but is shaped {}".format(r_shape) + else: + assert r_shape == hph_shape, "shape of R should be {} but it is {}".format(hph_shape, r_shape) + + if z is not None: + z_shape = shape(z) + else: + z_shape = (self.dim_z, 1) + + # H@x must have shape of z + Hx = dot(H, x) + + if z_shape == (): # scalar or np.array(scalar) + assert Hx.ndim == 1 or shape(Hx) == ( + 1, + 1, + ), "shape of z should be {}, not {} for the given H".format(shape(Hx), z_shape) + + elif shape(Hx) == (1,): + assert z_shape[0] == 1, "Shape of z must be {} for the given H".format(shape(Hx)) + + else: + assert z_shape == shape(Hx) or ( + len(z_shape) == 1 and shape(Hx) == (z_shape[0], 1) + ), "shape of z should be {}, not {} for the given H".format(shape(Hx), z_shape) + + if np.ndim(Hx) > 1 and shape(Hx) != (1, 1): + assert shape(Hx) == z_shape, "shape of z should be {} for the given H, but it is {}".format( + shape(Hx), z_shape + ) + + +def update(x, P, z, R, H=None, return_all=False): + """ + Add a new measurement (z) to the Kalman filter. If z is None, nothing + is changed. + This can handle either the multidimensional or unidimensional case. If + all parameters are floats instead of arrays the filter will still work, + and return floats for x, P as the result. + update(1, 2, 1, 1, 1) # univariate + update(x, P, 1 + Parameters + ---------- + x : numpy.array(dim_x, 1), or float + State estimate vector + P : numpy.array(dim_x, dim_x), or float + Covariance matrix + z : (dim_z, 1): array_like + measurement for this update. z can be a scalar if dim_z is 1, + otherwise it must be convertible to a column vector. + R : numpy.array(dim_z, dim_z), or float + Measurement noise matrix + H : numpy.array(dim_x, dim_x), or float, optional + Measurement function. If not provided, a value of 1 is assumed. + return_all : bool, default False + If true, y, K, S, and log_likelihood are returned, otherwise + only x and P are returned. + Returns + ------- + x : numpy.array + Posterior state estimate vector + P : numpy.array + Posterior covariance matrix + y : numpy.array or scalar + Residua. Difference between measurement and state in measurement space + K : numpy.array + Kalman gain + S : numpy.array + System uncertainty in measurement space + log_likelihood : float + log likelihood of the measurement + """ + + # pylint: disable=bare-except + + if z is None: + if return_all: + return x, P, None, None, None, None + return x, P + + if H is None: + H = np.array([1]) + + if np.isscalar(H): + H = np.array([H]) + + Hx = np.atleast_1d(dot(H, x)) + z = reshape_z(z, Hx.shape[0], x.ndim) + + # error (residual) between measurement and prediction + y = z - Hx + + # project system uncertainty into measurement space + S = dot(dot(H, P), H.T) + R + + # map system uncertainty into kalman gain + try: + K = dot(dot(P, H.T), linalg.inv(S)) + except: + # can't invert a 1D array, annoyingly + K = dot(dot(P, H.T), 1.0 / S) + + # predict new x with residual scaled by the kalman gain + x = x + dot(K, y) + + # P = (I-KH)P(I-KH)' + KRK' + KH = dot(K, H) + + try: + I_KH = np.eye(KH.shape[0]) - KH + except: + I_KH = np.array([1 - KH]) + P = dot(dot(I_KH, P), I_KH.T) + dot(dot(K, R), K.T) + + if return_all: + # compute log likelihood + log_likelihood = logpdf(z, dot(H, x), S) + return x, P, y, K, S, log_likelihood + return x, P + + +def update_steadystate(x, z, K, H=None): + """ + Add a new measurement (z) to the Kalman filter. If z is None, nothing + is changed. + Parameters + ---------- + x : numpy.array(dim_x, 1), or float + State estimate vector + z : (dim_z, 1): array_like + measurement for this update. z can be a scalar if dim_z is 1, + otherwise it must be convertible to a column vector. + K : numpy.array, or float + Kalman gain matrix + H : numpy.array(dim_x, dim_x), or float, optional + Measurement function. If not provided, a value of 1 is assumed. + Returns + ------- + x : numpy.array + Posterior state estimate vector + Examples + -------- + This can handle either the multidimensional or unidimensional case. If + all parameters are floats instead of arrays the filter will still work, + and return floats for x, P as the result. + >>> update_steadystate(1, 2, 1) # univariate + >>> update_steadystate(x, P, z, H) + """ + + if z is None: + return x + + if H is None: + H = np.array([1]) + + if np.isscalar(H): + H = np.array([H]) + + Hx = np.atleast_1d(dot(H, x)) + z = reshape_z(z, Hx.shape[0], x.ndim) + + # error (residual) between measurement and prediction + y = z - Hx + + # estimate new x with residual scaled by the kalman gain + return x + dot(K, y) + + +def predict(x, P, F=1, Q=0, u=0, B=1, alpha=1.0): + """ + Predict next state (prior) using the Kalman filter state propagation + equations. + Parameters + ---------- + x : numpy.array + State estimate vector + P : numpy.array + Covariance matrix + F : numpy.array() + State Transition matrix + Q : numpy.array, Optional + Process noise matrix + u : numpy.array, Optional, default 0. + Control vector. If non-zero, it is multiplied by B + to create the control input into the system. + B : numpy.array, optional, default 0. + Control transition matrix. + alpha : float, Optional, default=1.0 + Fading memory setting. 1.0 gives the normal Kalman filter, and + values slightly larger than 1.0 (such as 1.02) give a fading + memory effect - previous measurements have less influence on the + filter's estimates. This formulation of the Fading memory filter + (there are many) is due to Dan Simon + Returns + ------- + x : numpy.array + Prior state estimate vector + P : numpy.array + Prior covariance matrix + """ + + if np.isscalar(F): + F = np.array(F) + x = dot(F, x) + dot(B, u) + P = (alpha * alpha) * dot(dot(F, P), F.T) + Q + + return x, P + + +def predict_steadystate(x, F=1, u=0, B=1): + """ + Predict next state (prior) using the Kalman filter state propagation + equations. This steady state form only computes x, assuming that the + covariance is constant. + Parameters + ---------- + x : numpy.array + State estimate vector + P : numpy.array + Covariance matrix + F : numpy.array() + State Transition matrix + u : numpy.array, Optional, default 0. + Control vector. If non-zero, it is multiplied by B + to create the control input into the system. + B : numpy.array, optional, default 0. + Control transition matrix. + Returns + ------- + x : numpy.array + Prior state estimate vector + """ + + if np.isscalar(F): + F = np.array(F) + x = dot(F, x) + dot(B, u) + + return x + + +def batch_filter(x, P, zs, Fs, Qs, Hs, Rs, Bs=None, us=None, update_first=False, saver=None): + """ + Batch processes a sequences of measurements. + Parameters + ---------- + zs : list-like + list of measurements at each time step. Missing measurements must be + represented by None. + Fs : list-like + list of values to use for the state transition matrix matrix. + Qs : list-like + list of values to use for the process error + covariance. + Hs : list-like + list of values to use for the measurement matrix. + Rs : list-like + list of values to use for the measurement error + covariance. + Bs : list-like, optional + list of values to use for the control transition matrix; + a value of None in any position will cause the filter + to use `self.B` for that time step. + us : list-like, optional + list of values to use for the control input vector; + a value of None in any position will cause the filter to use + 0 for that time step. + update_first : bool, optional + controls whether the order of operations is update followed by + predict, or predict followed by update. Default is predict->update. + saver : filterpy.common.Saver, optional + filterpy.common.Saver object. If provided, saver.save() will be + called after every epoch + Returns + ------- + means : np.array((n,dim_x,1)) + array of the state for each time step after the update. Each entry + is an np.array. In other words `means[k,:]` is the state at step + `k`. + covariance : np.array((n,dim_x,dim_x)) + array of the covariances for each time step after the update. + In other words `covariance[k,:,:]` is the covariance at step `k`. + means_predictions : np.array((n,dim_x,1)) + array of the state for each time step after the predictions. Each + entry is an np.array. In other words `means[k,:]` is the state at + step `k`. + covariance_predictions : np.array((n,dim_x,dim_x)) + array of the covariances for each time step after the prediction. + In other words `covariance[k,:,:]` is the covariance at step `k`. + Examples + -------- + .. code-block:: Python + zs = [t + random.randn()*4 for t in range (40)] + Fs = [kf.F for t in range (40)] + Hs = [kf.H for t in range (40)] + (mu, cov, _, _) = kf.batch_filter(zs, Rs=R_list, Fs=Fs, Hs=Hs, Qs=None, + Bs=None, us=None, update_first=False) + (xs, Ps, Ks, Pps) = kf.rts_smoother(mu, cov, Fs=Fs, Qs=None) + """ + + n = np.size(zs, 0) + dim_x = x.shape[0] + + # mean estimates from Kalman Filter + if x.ndim == 1: + means = zeros((n, dim_x)) + means_p = zeros((n, dim_x)) + else: + means = zeros((n, dim_x, 1)) + means_p = zeros((n, dim_x, 1)) + + # state covariances from Kalman Filter + covariances = zeros((n, dim_x, dim_x)) + covariances_p = zeros((n, dim_x, dim_x)) + + if us is None: + us = [0.0] * n + Bs = [0.0] * n + + if update_first: + for i, (z, F, Q, H, R, B, u) in enumerate(zip(zs, Fs, Qs, Hs, Rs, Bs, us)): + + x, P = update(x, P, z, R=R, H=H) + means[i, :] = x + covariances[i, :, :] = P + + x, P = predict(x, P, u=u, B=B, F=F, Q=Q) + means_p[i, :] = x + covariances_p[i, :, :] = P + if saver is not None: + saver.save() + else: + for i, (z, F, Q, H, R, B, u) in enumerate(zip(zs, Fs, Qs, Hs, Rs, Bs, us)): + + x, P = predict(x, P, u=u, B=B, F=F, Q=Q) + means_p[i, :] = x + covariances_p[i, :, :] = P + + x, P = update(x, P, z, R=R, H=H) + means[i, :] = x + covariances[i, :, :] = P + if saver is not None: + saver.save() + + return (means, covariances, means_p, covariances_p) + + +def rts_smoother(Xs, Ps, Fs, Qs): + """ + Runs the Rauch-Tung-Striebel Kalman smoother on a set of + means and covariances computed by a Kalman filter. The usual input + would come from the output of `KalmanFilter.batch_filter()`. + Parameters + ---------- + Xs : numpy.array + array of the means (state variable x) of the output of a Kalman + filter. + Ps : numpy.array + array of the covariances of the output of a kalman filter. + Fs : list-like collection of numpy.array + State transition matrix of the Kalman filter at each time step. + Qs : list-like collection of numpy.array, optional + Process noise of the Kalman filter at each time step. + Returns + ------- + x : numpy.ndarray + smoothed means + P : numpy.ndarray + smoothed state covariances + K : numpy.ndarray + smoother gain at each step + pP : numpy.ndarray + predicted state covariances + Examples + -------- + .. code-block:: Python + zs = [t + random.randn()*4 for t in range (40)] + (mu, cov, _, _) = kalman.batch_filter(zs) + (x, P, K, pP) = rts_smoother(mu, cov, kf.F, kf.Q) + """ + + if len(Xs) != len(Ps): + raise ValueError("length of Xs and Ps must be the same") + + n = Xs.shape[0] + dim_x = Xs.shape[1] + + # smoother gain + K = zeros((n, dim_x, dim_x)) + x, P, pP = Xs.copy(), Ps.copy(), Ps.copy() + + for k in range(n - 2, -1, -1): + pP[k] = dot(dot(Fs[k], P[k]), Fs[k].T) + Qs[k] + + # pylint: disable=bad-whitespace + K[k] = dot(dot(P[k], Fs[k].T), linalg.inv(pP[k])) + x[k] += dot(K[k], x[k + 1] - dot(Fs[k], x[k])) + P[k] += dot(dot(K[k], P[k + 1] - pP[k]), K[k].T) + + return (x, P, K, pP) diff --git a/trackers/integrated_ocsort_embedding/ocsort.py b/trackers/integrated_ocsort_embedding/ocsort.py new file mode 100644 index 0000000000000000000000000000000000000000..c20d8f28486326b24fb8399ca878084e444764a6 --- /dev/null +++ b/trackers/integrated_ocsort_embedding/ocsort.py @@ -0,0 +1,513 @@ +""" + This script is adopted from the SORT script by Alex Bewley alex@bewley.ai +""" +from __future__ import print_function + +import pdb +import pickle + +import cv2 + +import numpy as np +from .association import * +from .embedding import EmbeddingComputer +from .cmc import CMCComputer + + +def k_previous_obs(observations, cur_age, k): + if len(observations) == 0: + return [-1, -1, -1, -1, -1] + for i in range(k): + dt = k - i + if cur_age - dt in observations: + return observations[cur_age - dt] + max_age = max(observations.keys()) + return observations[max_age] + + +def convert_bbox_to_z(bbox): + """ + Takes a bounding box in the form [x1,y1,x2,y2] and returns z in the form + [x,y,s,r] where x,y is the centre of the box and s is the scale/area and r is + the aspect ratio + """ + w = bbox[2] - bbox[0] + h = bbox[3] - bbox[1] + x = bbox[0] + w / 2.0 + y = bbox[1] + h / 2.0 + s = w * h # scale is just area + r = w / float(h + 1e-6) + return np.array([x, y, s, r]).reshape((4, 1)) + + +def convert_bbox_to_z_new(bbox): + w = bbox[2] - bbox[0] + h = bbox[3] - bbox[1] + x = bbox[0] + w / 2.0 + y = bbox[1] + h / 2.0 + return np.array([x, y, w, h]).reshape((4, 1)) + + +def convert_x_to_bbox_new(x): + x, y, w, h = x.reshape(-1)[:4] + return np.array([x - w / 2, y - h / 2, x + w / 2, y + h / 2]).reshape(1, 4) + + +def convert_x_to_bbox(x, score=None): + """ + Takes a bounding box in the centre form [x,y,s,r] and returns it in the form + [x1,y1,x2,y2] where x1,y1 is the top left and x2,y2 is the bottom right + """ + w = np.sqrt(x[2] * x[3]) + h = x[2] / w + if score == None: + return np.array([x[0] - w / 2.0, x[1] - h / 2.0, x[0] + w / 2.0, x[1] + h / 2.0]).reshape((1, 4)) + else: + return np.array([x[0] - w / 2.0, x[1] - h / 2.0, x[0] + w / 2.0, x[1] + h / 2.0, score]).reshape((1, 5)) + + +def speed_direction(bbox1, bbox2): + cx1, cy1 = (bbox1[0] + bbox1[2]) / 2.0, (bbox1[1] + bbox1[3]) / 2.0 + cx2, cy2 = (bbox2[0] + bbox2[2]) / 2.0, (bbox2[1] + bbox2[3]) / 2.0 + speed = np.array([cy2 - cy1, cx2 - cx1]) + norm = np.sqrt((cy2 - cy1) ** 2 + (cx2 - cx1) ** 2) + 1e-6 + return speed / norm + + +def new_kf_process_noise(w, h, p=1 / 20, v=1 / 160): + Q = np.diag( + ( + (p * w) ** 2, + (p * h) ** 2, + (p * w) ** 2, + (p * h) ** 2, + (v * w) ** 2, + (v * h) ** 2, + (v * w) ** 2, + (v * h) ** 2, + ) + ) + return Q + + +def new_kf_measurement_noise(w, h, m=1 / 20): + w_var = (m * w) ** 2 + h_var = (m * h) ** 2 + R = np.diag((w_var, h_var, w_var, h_var)) + return R + + +class KalmanBoxTracker(object): + """ + This class represents the internal state of individual tracked objects observed as bbox. + """ + + count = 0 + + def __init__(self, bbox, delta_t=3, orig=False, emb=None, alpha=0, new_kf=False): + """ + Initialises a tracker using initial bounding box. + + """ + # define constant velocity model + if not orig: + from .kalmanfilter import KalmanFilterNew as KalmanFilter + else: + from filterpy.kalman import KalmanFilter + + self.new_kf = new_kf + if new_kf: + self.kf = KalmanFilter(dim_x=8, dim_z=4) + self.kf.F = np.array( + [ + # x y w h x' y' w' h' + [1, 0, 0, 0, 1, 0, 0, 0], + [0, 1, 0, 0, 0, 1, 0, 0], + [0, 0, 1, 0, 0, 0, 1, 0], + [0, 0, 0, 1, 0, 0, 0, 1], + [0, 0, 0, 0, 1, 0, 0, 0], + [0, 0, 0, 0, 0, 1, 0, 0], + [0, 0, 0, 0, 0, 0, 1, 0], + [0, 0, 0, 0, 0, 0, 0, 1], + ] + ) + self.kf.H = np.array( + [ + [1, 0, 0, 0, 0, 0, 0, 0], + [0, 1, 0, 0, 0, 0, 0, 0], + [0, 0, 1, 0, 0, 0, 0, 0], + [0, 0, 0, 1, 0, 0, 0, 0], + ] + ) + _, _, w, h = convert_bbox_to_z_new(bbox).reshape(-1) + self.kf.P = new_kf_process_noise(w, h) + self.kf.P[:4, :4] *= 4 + self.kf.P[4:, 4:] *= 100 + # Process and measurement uncertainty happen in functions + self.bbox_to_z_func = convert_bbox_to_z_new + self.x_to_bbox_func = convert_x_to_bbox_new + else: + self.kf = KalmanFilter(dim_x=7, dim_z=4) + self.kf.F = np.array( + [ + # x y s r x' y' s' + [1, 0, 0, 0, 1, 0, 0], + [0, 1, 0, 0, 0, 1, 0], + [0, 0, 1, 0, 0, 0, 1], + [0, 0, 0, 1, 0, 0, 0], + [0, 0, 0, 0, 1, 0, 0], + [0, 0, 0, 0, 0, 1, 0], + [0, 0, 0, 0, 0, 0, 1], + ] + ) + self.kf.H = np.array( + [ + [1, 0, 0, 0, 0, 0, 0], + [0, 1, 0, 0, 0, 0, 0], + [0, 0, 1, 0, 0, 0, 0], + [0, 0, 0, 1, 0, 0, 0], + ] + ) + self.kf.R[2:, 2:] *= 10.0 + self.kf.P[4:, 4:] *= 1000.0 # give high uncertainty to the unobservable initial velocities + self.kf.P *= 10.0 + self.kf.Q[-1, -1] *= 0.01 + self.kf.Q[4:, 4:] *= 0.01 + self.bbox_to_z_func = convert_bbox_to_z + self.x_to_bbox_func = convert_x_to_bbox + + # Attempt + # self.kf.P[2, 2] = 10000 + # self.kf.R[2, 2] = 10000 + + self.kf.x[:4] = self.bbox_to_z_func(bbox) + + self.time_since_update = 0 + self.id = KalmanBoxTracker.count + KalmanBoxTracker.count += 1 + self.history = [] + self.hits = 0 + self.hit_streak = 0 + self.age = 0 + """ + NOTE: [-1,-1,-1,-1,-1] is a compromising placeholder for non-observation status, the same for the return of + function k_previous_obs. It is ugly and I do not like it. But to support generate observation array in a + fast and unified way, which you would see below k_observations = np.array([k_previous_obs(...]]), let's bear it for now. + """ + # Used for OCR + self.last_observation = np.array([-1, -1, -1, -1, -1]) # placeholder + # Used to output track after min_hits reached + self.history_observations = [] + # Used for velocity + self.observations = dict() + self.velocity = None + self.delta_t = delta_t + + self.emb = emb + + self.frozen = False + + def update(self, bbox): + """ + Updates the state vector with observed bbox. + """ + if bbox is not None: + self.frozen = False + + if self.last_observation.sum() >= 0: # no previous observation + previous_box = None + for dt in range(self.delta_t, 0, -1): + if self.age - dt in self.observations: + previous_box = self.observations[self.age - dt] + break + if previous_box is None: + previous_box = self.last_observation + """ + Estimate the track speed direction with observations \Delta t steps away + """ + self.velocity = speed_direction(previous_box, bbox) + """ + Insert new observations. This is a ugly way to maintain both self.observations + and self.history_observations. Bear it for the moment. + """ + self.last_observation = bbox + self.observations[self.age] = bbox + self.history_observations.append(bbox) + + self.time_since_update = 0 + self.history = [] + self.hits += 1 + self.hit_streak += 1 + if self.new_kf: + R = new_kf_measurement_noise(self.kf.x[2, 0], self.kf.x[3, 0]) + self.kf.update(self.bbox_to_z_func(bbox), R=R, new_kf=True) + else: + self.kf.update(self.bbox_to_z_func(bbox)) + else: + self.kf.update(bbox, new_kf=self.new_kf) + self.frozen = True + + def update_emb(self, emb, alpha=0.9): + self.emb = alpha * self.emb + (1 - alpha) * emb + self.emb /= np.linalg.norm(self.emb) + + def get_emb(self): + return self.emb + + def apply_affine_correction(self, affine): + m = affine[:, :2] + t = affine[:, 2].reshape(2, 1) + # For OCR + if self.last_observation.sum() > 0: + ps = self.last_observation[:4].reshape(2, 2).T + ps = m @ ps + t + self.last_observation[:4] = ps.T.reshape(-1) + + # Apply to each box in the range of velocity computation + for dt in range(self.delta_t, -1, -1): + if self.age - dt in self.observations: + ps = self.observations[self.age - dt][:4].reshape(2, 2).T + ps = m @ ps + t + self.observations[self.age - dt][:4] = ps.T.reshape(-1) + + # Also need to change kf state, but might be frozen + self.kf.apply_affine_correction(m, t, self.new_kf) + + def predict(self): + """ + Advances the state vector and returns the predicted bounding box estimate. + """ + # Don't allow negative bounding boxes + if self.new_kf: + if self.kf.x[2] + self.kf.x[6] <= 0: + self.kf.x[6] = 0 + if self.kf.x[3] + self.kf.x[7] <= 0: + self.kf.x[7] = 0 + + # Stop velocity, will update in kf during OOS + if self.frozen: + self.kf.x[6] = self.kf.x[7] = 0 + Q = new_kf_process_noise(self.kf.x[2, 0], self.kf.x[3, 0]) + else: + if (self.kf.x[6] + self.kf.x[2]) <= 0: + self.kf.x[6] *= 0.0 + Q = None + + self.kf.predict(Q=Q) + self.age += 1 + if self.time_since_update > 0: + self.hit_streak = 0 + self.time_since_update += 1 + self.history.append(self.x_to_bbox_func(self.kf.x)) + return self.history[-1] + + def get_state(self): + """ + Returns the current bounding box estimate. + """ + return self.x_to_bbox_func(self.kf.x) + + def mahalanobis(self, bbox): + """Should be run after a predict() call for accuracy.""" + return self.kf.md_for_measurement(self.bbox_to_z_func(bbox)) + + +""" + We support multiple ways for association cost calculation, by default + we use IoU. GIoU may have better performance in some situations. We note + that we hardly normalize the cost by all methods to (0,1) which may not be + the best practice. +""" +ASSO_FUNCS = { + "iou": iou_batch, + "giou": giou_batch, + "ciou": ciou_batch, + "diou": diou_batch, + "ct_dist": ct_dist, +} + + +class Track: + def __init__(self, track_id, tlrb, score): + self.track_id = track_id + self.tlwh = [tlrb[0], tlrb[1], tlrb[2] - tlrb[0], tlrb[3] - tlrb[1]] + self.score = score + + +class OCSort(object): + def __init__( + self, + det_thresh, + max_age=30, + min_hits=3, + iou_threshold=0.3, + delta_t=3, + asso_func="iou", + inertia=0.2, + w_association_emb=0.75, + alpha_fixed_emb=0.95, + aw_param=0.5, + embedding_off=False, + cmc_off=True, + aw_off=False, + new_kf_off=False, + grid_off=False, + **kwargs, + ): + """ + Sets key parameters for SORT + """ + self.max_age = max_age + self.min_hits = min_hits + self.iou_threshold = iou_threshold + self.trackers = [] + self.frame_count = 0 + self.det_thresh = det_thresh + self.delta_t = delta_t + self.asso_func = ASSO_FUNCS[asso_func] + self.inertia = inertia + self.w_association_emb = w_association_emb + self.alpha_fixed_emb = alpha_fixed_emb + self.aw_param = aw_param + KalmanBoxTracker.count = 0 + + # self.embedder = EmbeddingComputer(kwargs["args"].dataset, kwargs["args"].test_dataset, grid_off) + # self.cmc = CMCComputer() + self.embedding_off = embedding_off + self.cmc_off = cmc_off + self.aw_off = aw_off + self.new_kf_off = new_kf_off + self.grid_off = grid_off + + def update(self, fdets, img): + """ + Params: + dets - a numpy array of detections in the format [[x1,y1,x2,y2,score],[x1,y1,x2,y2,score],...] + Requires: this method must be called once for each frame even with empty detections (use np.empty((0, 5)) for frames without detections). + Returns the a similar array, where the last column is the object ID. + NOTE: The number of objects returned may differ from the number of detections provided. + """ + ##### + remain_inds = fdets[:, 4] > self.det_thresh + dets, dets_embs = fdets[remain_inds, 0:5], fdets[remain_inds, 5:] + self.frame_count += 1 + + # CMC + if not self.cmc_off: + transform = self.cmc.compute_affine(img_numpy, dets[:, :4], tag) + for trk in self.trackers: + trk.apply_affine_correction(transform) + + trust = (dets[:, 4] - self.det_thresh) / (1 - self.det_thresh) + af = self.alpha_fixed_emb + # From [self.alpha_fixed_emb, 1], goes to 1 as detector is less confident + dets_alpha = af + (1 - af) * (1 - trust) + + # get predicted locations from existing trackers. + trks = np.zeros((len(self.trackers), 5)) + trk_embs = [] + to_del = [] + ret = [] + for t, trk in enumerate(trks): + pos = self.trackers[t].predict()[0] + trk[:] = [pos[0], pos[1], pos[2], pos[3], 0] + if np.any(np.isnan(pos)): + to_del.append(t) + else: + trk_embs.append(self.trackers[t].get_emb()) + trks = np.ma.compress_rows(np.ma.masked_invalid(trks)) + # Shape = (num_trackers, 3, 512) if grid + trk_embs = np.array(trk_embs) + for t in reversed(to_del): + self.trackers.pop(t) + + velocities = np.array([trk.velocity if trk.velocity is not None else np.array((0, 0)) for trk in self.trackers]) + last_boxes = np.array([trk.last_observation for trk in self.trackers]) + k_observations = np.array([k_previous_obs(trk.observations, trk.age, self.delta_t) for trk in self.trackers]) + + """ + First round of association + """ + matched, unmatched_dets, unmatched_trks = associate( + dets, + trks, + dets_embs, + trk_embs, + self.iou_threshold, + velocities, + k_observations, + self.inertia, + self.w_association_emb, + self.aw_off, + self.aw_param, + self.embedding_off, + self.grid_off, + ) + for m in matched: + self.trackers[m[1]].update(dets[m[0], :]) + self.trackers[m[1]].update_emb(dets_embs[m[0]], alpha=dets_alpha[m[0]]) + """ + Second round of associaton by OCR + """ + if unmatched_dets.shape[0] > 0 and unmatched_trks.shape[0] > 0: + left_dets = dets[unmatched_dets] + left_dets_embs = dets_embs[unmatched_dets] + left_trks = last_boxes[unmatched_trks] + left_trks_embs = trk_embs[unmatched_trks] + + # TODO: maybe use embeddings here + iou_left = self.asso_func(left_dets, left_trks) + iou_left = np.array(iou_left) + if iou_left.max() > self.iou_threshold: + """ + NOTE: by using a lower threshold, e.g., self.iou_threshold - 0.1, you may + get a higher performance especially on MOT17/MOT20 datasets. But we keep it + uniform here for simplicity + """ + rematched_indices = linear_assignment(-iou_left) + + to_remove_det_indices = [] + to_remove_trk_indices = [] + for m in rematched_indices: + det_ind, trk_ind = unmatched_dets[m[0]], unmatched_trks[m[1]] + if iou_left[m[0], m[1]] < self.iou_threshold: + continue + self.trackers[trk_ind].update(dets[det_ind, :]) + self.trackers[trk_ind].update_emb(dets_embs[det_ind], alpha=dets_alpha[det_ind]) + to_remove_det_indices.append(det_ind) + to_remove_trk_indices.append(trk_ind) + unmatched_dets = np.setdiff1d(unmatched_dets, np.array(to_remove_det_indices)) + unmatched_trks = np.setdiff1d(unmatched_trks, np.array(to_remove_trk_indices)) + + for m in unmatched_trks: + self.trackers[m].update(None) + + # create and initialise new trackers for unmatched detections + for i in unmatched_dets: + trk = KalmanBoxTracker( + dets[i, :], delta_t=self.delta_t, emb=dets_embs[i], alpha=dets_alpha[i], new_kf=not self.new_kf_off + ) + self.trackers.append(trk) + i = len(self.trackers) + for trk in reversed(self.trackers): + if trk.last_observation.sum() < 0: + d = trk.get_state()[0] + else: + """ + this is optional to use the recent observation or the kalman filter prediction, + we didn't notice significant difference here + """ + d = trk.last_observation[:4] + if (trk.time_since_update < 1) and (trk.hit_streak >= self.min_hits or self.frame_count <= self.min_hits): + # +1 as MOT benchmark requires positive + # ret.append(np.concatenate((d, [trk.id + 1])).reshape(1, -1)) + ret.append(Track(trk.id + 1, d, 1)) + i -= 1 + # remove dead tracklet + if trk.time_since_update > self.max_age: + self.trackers.pop(i) + return ret + + def dump_cache(self): + self.cmc.dump_cache() + self.embedder.dump_cache() diff --git a/trackers/joint_lmb/compute_pd.fis b/trackers/joint_lmb/compute_pd.fis new file mode 100644 index 0000000000000000000000000000000000000000..9909a9064e3413e5cedd41740b081eca81866d5b --- /dev/null +++ b/trackers/joint_lmb/compute_pd.fis @@ -0,0 +1,47 @@ +[System] +Name='compute_pd' +Type='mamdani' +Version=2.0 +NumInputs=2 +NumOutputs=1 +NumRules=9 +AndMethod='min' +OrMethod='max' +ImpMethod='min' +AggMethod='max' +DefuzzMethod='centroid' + +[Input1] +Name='AreaRate' +Range=[0 2] +NumMFs=3 +MF1='L':'trimf',[0 0 0.6] +MF2='M':'trimf',[0 1 2] +MF3='H':'trimf',[1.4 2 2] + +[Input2] +Name='IOA' +Range=[0 1] +NumMFs=3 +MF1='L':'trimf',[0 0 0.3] +MF2='M':'trimf',[0 0.5 1] +MF3='H':'trimf',[0.7 1 1] + +[Output1] +Name='PD' +Range=[0.4 0.99] +NumMFs=3 +MF1='L':'trimf',[0.4 0.4 0.577] +MF2='M':'trimf',[0.4 0.695 0.99] +MF3='H':'trimf',[0.813 0.99 0.99] + +[Rules] +1 1, 2 (1) : 1 +2 1, 2 (1) : 1 +3 1, 3 (1) : 1 +1 2, 1 (1) : 1 +2 2, 2 (1) : 1 +3 2, 3 (1) : 1 +1 3, 1 (1) : 1 +2 3, 1 (1) : 1 +3 3, 1 (1) : 1 diff --git a/trackers/joint_lmb/joint_lmb.py b/trackers/joint_lmb/joint_lmb.py new file mode 100644 index 0000000000000000000000000000000000000000..c9d1338847f23ed95b06478c0278f4dfc5dc78a4 --- /dev/null +++ b/trackers/joint_lmb/joint_lmb.py @@ -0,0 +1,507 @@ +from scipy.spatial.distance import cdist +from scipy.stats.distributions import chi2 +from scipy.special import logsumexp +import numpy as np +import lap + +from .utils import gate_meas_gms_idx, kalman_update_multiple, esf +from cpputils import bboxes_ioi_xyah_back2front, ComputePD, Murty, esf, bbox_iou_xyah, bboxes_ioi_xyah_back2front_all + + +class Track: + def __init__(self, track_id, tlrb, score): + self.track_id = track_id + self.tlwh = [tlrb[0], tlrb[1], tlrb[2] - tlrb[0], tlrb[3] - tlrb[1]] + self.score = score + + +class ModelParas: + # filter parameters + def __init__(self): + self.T_max = 100 # maximum number of tracks + self.track_threshold = 1e-3 # threshold to prune tracks + self.H_upd = 500 # requested number of updated components/hypotheses (for GLMB update) + + self.x_dim = 8 + self.z_dim = 4 + self.P_G = 0.99 # gate size in percentage + self.gamma = chi2.ppf(self.P_G, self.z_dim) # inv chi^2 dn gamma value + self.P_D = .8 # probability of detection in measurements + self.P_S = .99 # survival/death parameters + + # clutter parameters + self.lambda_c = 0.5 # poisson average rate of uniform clutter (per scan) + self.range_c = np.array([[0, 1920], [0, 1080]]) # uniform clutter region + self.pdf_c = 1 / np.prod(self.range_c[:, 1] - self.range_c[:, 0]) # uniform clutter density + self.model_c = self.lambda_c * self.pdf_c + + float_precision = 'f8' + # observation noise covariance + self.R = np.array([[50., 0., 0., 0.], + [0., 50., 0., 0.], + [0., 0., 0.01, 0.], + [0., 0., 0., 50.]], dtype=float_precision) + T = 1 # sate vector [x,y,a,h,dx,dy,da,dh] + sigma_xy, sigma_a, sigma_h = 3 ** 2, 1e-4, 3 ** 2 + self.Q = np.array( + [[T ** 4 * (sigma_xy / 4), 0, 0, 0, T ** 3 * (sigma_xy / 2), 0, 0, 0], # process noise covariance + [0, T ** 4 * (sigma_xy / 4), 0, 0, 0, T ** 3 * (sigma_xy / 2), 0, 0], + [0, 0, T ** 4 * (sigma_a / 4), 0, 0, 0, T ** 3 * (sigma_a / 2), 0], + [0, 0, 0, T ** 4 * (sigma_h / 4), 0, 0, 0, T ** 3 * (sigma_h / 2)], + [T ** 3 * (sigma_xy / 2), 0, 0, 0, sigma_xy * T ** 2, 0, 0, 0], + [0, T ** 3 * (sigma_xy / 2), 0, 0, 0, sigma_xy * T ** 2, 0, 0], + [0, 0, T ** 3 * (sigma_a / 2), 0, 0, 0, sigma_a * T ** 2, 0], + [0, 0, 0, T ** 3 * (sigma_h / 2), 0, 0, 0, sigma_h * T ** 2]], dtype=float_precision) + + self.F = np.array([[1, 0, 0, 0, 1, 0, 0, 0], # Motion model: state transition matrix + [0, 1, 0, 0, 0, 1, 0, 0], + [0, 0, 1, 0, 0, 0, 1, 0], + [0, 0, 0, 1, 0, 0, 0, 1], + [0, 0, 0, 0, 1, 0, 0, 0], + [0, 0, 0, 0, 0, 1, 0, 0], + [0, 0, 0, 0, 0, 0, 1, 0], + [0, 0, 0, 0, 0, 0, 0, 1]], dtype=float_precision) + self.H = np.array([[1, 0, 0, 0, 0, 0, 0, 0], # observation matrix + [0, 1, 0, 0, 0, 0, 0, 0], + [0, 0, 1, 0, 0, 0, 0, 0], + [0, 0, 0, 1, 0, 0, 0, 0]], dtype=float_precision) + # Use P_birth from width, height of detected bbox diag(w, h, w, h) + self.b_thresh = 0.95 # only birth a new target at a measurement that has lower assign_prob than this threshold + self.lambda_b = 0.1 # Set lambda_b to the mean cardinality of the birth multi-Bernoulli RFS + self.prob_birth = 0.03 # Initial existence probability of a birth track + # END + + +class Target: + # track table for GLMB (cell array of structs for individual tracks) + # (1) r: existence probability + # (2) Gaussian Mixture w (weight), m (mean), P (covariance matrix) + # (3) Label: birth time & index of target at birth time step + # (4) gatemeas: indexes gating measurement (using Chi-squared distribution) + # (5) deep feature: representing feature information extracted from re-identification network + def __init__(self, z, feat, prob_birth, label, use_feat=True): + x_dim = 8 + max_cpmt = 1000 + + # wg, mg, Pg, ..., store temporary Gaussian mixtures while updating, see 'update_gms' + self.wg = np.zeros(max_cpmt, dtype='f8') + self.mg = np.zeros((x_dim, max_cpmt), dtype='f8') + self.Pg = np.zeros((x_dim, x_dim, max_cpmt), dtype='f8') + self.idxg = 0 + # store number of Gaussian mixtures before updating, see 'update_gms' + self.gm_len = 0 + + self.m = np.r_[z, np.zeros_like(z)][:, np.newaxis] + wh2 = (z[3] + z[2] * z[3]) / 2 # half perimeter + self.P = np.diag([wh2, wh2, 1, wh2, wh2, wh2, 1, wh2])[:, :, np.newaxis] + self.alpha_feat = 0.9 + self.r = prob_birth # existence probability of this birth + self.w = np.ones(1) # weights of Gaussians for birth track + self.l = label # label of this track + self.r_max = 0 # maximum existence probability, use for hysteresis + self.last_active = 0 # last frame, this track is not pruned or death + self.use_feat = use_feat # True/False whether using re-identification feature or NOT + self.feat = None + if use_feat: + self.feat = feat + self.gatemeas = np.empty(0, dtype=int) + + def predict_gms(self, model): + self.r = model.P_S * self.r + + plength = self.m.shape[1] + m_predict = np.zeros(self.m.shape) + P_predict = np.zeros(self.P.shape) + for idxp in range(plength): + m_temp = np.dot(model.F, self.m[:, idxp]) + P_temp = model.Q + np.dot(model.F, np.dot(self.P[:, :, idxp], model.F.T)) + m_predict[:, idxp] = m_temp + P_predict[:, :, idxp] = P_temp + + self.m = m_predict + self.P = P_predict + + def update_gms(self, model, z, feat): + # =========== gating by tracks =========== + zlength, plength = z.shape[0], self.m.shape[1] + if zlength == 0: + self.gatemeas = np.empty(0) + else: + valid_idx = np.zeros(zlength, dtype=bool) + for j in range(plength): + Sj = model.R + np.dot(np.dot(model.H, self.P[:, :, j]), model.H.T) + Vs = np.linalg.cholesky(Sj) + inv_sqrt_Sj = np.linalg.inv(Vs) + nu = z.T - np.tile(np.dot(model.H, self.m[:, j].reshape(-1, 1)), zlength) + dist = sum(np.square(np.dot(inv_sqrt_Sj, nu))) + valid_idx = np.logical_or(valid_idx, dist < model.gamma) + if self.use_feat: + cdist_tmp = cdist(feat, self.feat[np.newaxis, :], metric='cosine').flatten() + self.gatemeas = np.nonzero(np.logical_or(valid_idx, cdist_tmp < 0.3))[0] + dist = cdist(self.feat[np.newaxis, :], feat[self.gatemeas])[0] + else: + self.gatemeas = np.nonzero(valid_idx)[0] + dist = np.ones(len(self.gatemeas)) + # ======================================== + + self.idxg = 0 + # Gaussian mixtures for misdetection + length = len(self.w) + self.wg[:length] = self.w + self.mg[:, :length] = self.m + self.Pg[:, :, :length] = self.P + self.idxg += length + self.gm_len = length + + # Kalman update for each Gaussian with each gating measurement + cost_update = np.zeros(len(self.gatemeas)) + for i, emm in enumerate(self.gatemeas): + qz_temp, m_temp, P_temp = kalman_update_multiple(z[emm], model, self.m, self.P) + w_temp = np.multiply(qz_temp, self.w) + np.spacing(1) + + pm_temp = 0.1 * dist[i] ** 14 + 0.9 * (2 - dist[i]) ** 14 + + cost_update[i] = sum(w_temp) * pm_temp + length = len(qz_temp) + self.wg[self.idxg:self.idxg + length] = w_temp / sum(w_temp) + self.mg[:, self.idxg:self.idxg + length] = m_temp + self.Pg[:, :, self.idxg:self.idxg + length] = P_temp + self.idxg += length + + # Copy values back to each fields + self.w = self.wg[:self.idxg] + self.m = self.mg[:, :self.idxg] + self.P = self.Pg[:, :, :self.idxg] + + return cost_update + + # remove Gaussian mixtures in 'update_gm' that are not in ranked assignment + def select_gms(self, select_idxs): + self.w = self.wg[select_idxs] + self.m = self.mg[:, select_idxs] + self.P = self.Pg[:, :, select_idxs] + + def finalize_glmb2lmb(self, sums, association_idx, feat, time_step): + if association_idx > 0: # association_idx = 0, misdetection, keeping the same feature + if self.use_feat: + self.feat = self.alpha_feat * self.feat + self.feat += (1 - self.alpha_feat) * feat[int(association_idx - 1), :] + self.feat /= np.linalg.norm(self.feat) + self.last_active = time_step # only update if the highest hypothesis weight is not miss-detection + repeat_sums = np.repeat(sums, self.gm_len) + self.w *= repeat_sums + self.r = sum(self.w) + if self.r_max < self.r: + self.r_max = self.r + self.w = self.w / self.r + + def re_activate(self, z, feat, prob_birth): + self.m = np.r_[z, np.zeros_like(z)][:, np.newaxis] + wh2 = (z[3] + z[2] * z[3]) / 2 + self.P = np.diag([wh2, wh2, 1, wh2, wh2, wh2, 1, wh2])[:, :, np.newaxis] + self.r = prob_birth + self.w = np.ones(1) + self.feat = feat + + def cleanup(self, elim_threshold=1e-5, l_max=10): + # Gaussian prune, remove components that have weight lower than a threshold + idx = np.nonzero(self.w > elim_threshold)[0] + self.w = self.w[idx] + self.m = self.m[:, idx] + self.P = self.P[:, :, idx] + # Gaussian cap, limit on number of Gaussians in each track + if len(self.w) > l_max: + idx = np.argsort(-self.w) + w_new = self.w[idx[:l_max]] + self.w = w_new * (sum(self.w) / sum(w_new)) + self.m = self.m[:, idx[:l_max]] + self.P = self.P[:, :, idx[:l_max]] + + +class LMB: + def __init__(self, track_thresh, use_feat=True): + # initial prior + self.tt_lmb = [] + self.tt_birth = [] + self.glmb_update_w = np.array([1]) # 2, vector of GLMB component/hypothesis weights + self.assign_prob = None + self.model = ModelParas() + self.prune_tracks = [] + self.X = np.array([]) + self.L = np.array([], dtype=object) + self.tt_lmb_xyah = np.array([]) # LMB tracks state [x,y,a,h] + self.tt_lmb_feat = np.array([]) # LMB tracks reid feature + self.pd = ComputePD('./trackers/joint_lmb/compute_pd.fis') + self.sampling = Murty() + self.id = 0 + self.average_area = 1 + self.use_feat = use_feat + self.frame = 0 + self.track_thresh = track_thresh + + def jointlmbpredictupdate(self, model, z, feat, k): + # generate birth tracks + if k == 0: + for idx in range(z.shape[0]): + target = Target(z[idx], feat[idx], model.prob_birth, self.id, self.use_feat) + self.id += 1 # or label = '0.' + str(idx) + self.tt_birth.append(target) + self.average_area = sum(z[:, 2] * z[:, 3] ** 2) / z.shape[0] + + # generate surviving tracks + for target in self.tt_lmb: + target.predict_gms(model) + m = z.shape[0] # number of measurements + if m == 0: # see MOT16-12, frame #445 + return # no measurement to update, only predict existing tracks + + # create predicted tracks - concatenation of birth and survival + self.tt_lmb += self.tt_birth # copy track table back to GLMB struct + ntracks = len(self.tt_lmb) + self.tt_lmb_xyah = np.ascontiguousarray([tt.m[:4, np.argmax(tt.w)] for tt in self.tt_lmb], dtype=np.dtype('f8')) + + # compute Intersection Over Itself (between tt_lmb and estimated tracks) to find P_D for each track + avps = np.zeros((ntracks, 1)) + avpd = np.zeros((ntracks, 1)) + # object stands close to a camera has a higher bottom coordinate [(0, 0) : (top, left)] + # back to front: objects from far to near a camera + tt_labels = np.array([tt.l for tt in self.tt_lmb], dtype=np.dtype('int')) + mutual_ioi = bboxes_ioi_xyah_back2front(self.tt_lmb_xyah, tt_labels, self.X.T, self.L) + self.tt_lmb_xyah[:, 2] = np.clip(self.tt_lmb_xyah[:, 2], 0.15, None) # constraint 'a' not to be negative + area_all = self.tt_lmb_xyah[:, 2] * self.tt_lmb_xyah[:, 3] ** 2 + area_rate = np.clip(area_all / self.average_area, 0, 2) + for tabidx, tabidx_ioa in enumerate(mutual_ioi): + # average detection/missed probabilities + avpd[tabidx] = self.pd.compute(area_rate[tabidx], tabidx_ioa) + # average survival/death probabilities + avps[tabidx] = self.tt_lmb[tabidx].r + avqd = 1 - avpd + avqs = 1 - avps + + # create updated tracks (single target Bayes update) + allcostm = np.zeros((ntracks, m)) + for tabidx in range(ntracks): + cost_update = self.tt_lmb[tabidx].update_gms(model, z, feat) + allcostm[tabidx, self.tt_lmb[tabidx].gatemeas] = cost_update + + # joint cost matrix, eta_j eq (22) "An Efficient Implementation of the GLMB" + eta_j = np.multiply(np.multiply(avps, avpd), allcostm) / model.model_c + jointcostm = np.zeros((ntracks, 2 * ntracks + m)) + np.fill_diagonal(jointcostm, avqs) + np.fill_diagonal(jointcostm[:, ntracks:], np.multiply(avps, avqd)) + jointcostm[:, 2 * ntracks:2 * ntracks + m] = eta_j + + # calculate best updated hypotheses/components + # murty's algo/gibbs sampling to calculate m-best assignment hypotheses/components + if jointcostm.shape[0] > 0: + uasses, nlcost = self.sampling.draw_solutions(-np.log(jointcostm), model.H_upd) + else: + # no need sampling for empty cost matrix + uasses, nlcost = np.empty(0), np.empty(0) + uasses = uasses + 1 + uasses[uasses <= ntracks] = -np.inf # set not born/track deaths to -inf assignment + uasses[(uasses > ntracks) & (uasses <= 2 * ntracks)] = 0 # set survived+missed to 0 assignment + # set survived+detected to assignment of measurement index from 1:|Z| + uasses[uasses > 2 * ntracks] = uasses[uasses > 2 * ntracks] - 2 * ntracks + + # component updates + glmb_nextupdate_w = np.zeros(len(nlcost)) + self.assign_prob = np.zeros(m) # adaptive birth weight for each measurement + assign_meas = np.zeros((m, len(nlcost)), dtype=int) # store indexes of measurement assigned to a track + + iois = bboxes_ioi_xyah_back2front_all(self.tt_lmb_xyah) + self.pd.set_recompute_cost(avqs, avps, allcostm, model.model_c) + # generate corrresponding jointly predicted/updated hypotheses/components + for hidx in range(0, len(nlcost)): + update_hypcmp_tmp = uasses[hidx, :] + new_cost = self.pd.recompute_cost(update_hypcmp_tmp, iois, area_all) + # hypothesis/component weight + # Vo Ba-Ngu "An efficient implementation of the generalized labeled multi-Bernoulli filter." eq (20) + omega_z = -model.lambda_c + m * np.log(model.model_c) - new_cost # nlcost[hidx] + # Get measurement index from uasses (make sure minus 1 from [mindices+1]) + meas_idx = update_hypcmp_tmp[update_hypcmp_tmp > 0].astype(int) - 1 + assign_meas[meas_idx, hidx] = 1 + glmb_nextupdate_w[hidx] = omega_z + + glmb_nextupdate_w = np.exp(glmb_nextupdate_w - logsumexp(glmb_nextupdate_w)) # normalize weights + + self.assign_prob = assign_meas @ glmb_nextupdate_w + + # The following implementation is optimized for GLMB to LMB (glmb2lmb) + # Refer "The Labeled Multi-Bernoulli Filter, 2014" + for (i, target) in enumerate(self.tt_lmb): + notinf_uasses_idxs = np.nonzero(uasses[:, i] >= 0)[0] + workon_uasses = uasses[notinf_uasses_idxs, i] + workon_weights = glmb_nextupdate_w[notinf_uasses_idxs] + + u, inv = np.unique(workon_uasses, return_inverse=True) + if len(u) == 0: # no measurement association (including misdetection) + continue + sums = np.zeros(len(u), dtype=workon_weights.dtype) + np.add.at(sums, inv, workon_weights) + + # select gating measurement indexes appear in ranked assignment (u: variable) + # 0 for mis detection, 1->n for measurement index + _, select_idxs, _ = np.intersect1d(np.insert(target.gatemeas + 1, 0, 0), u, return_indices=True) + + # select 'block of gaussian mixtures' that are in 'select_idxs' + l_range = np.tile(np.arange(target.gm_len), len(select_idxs)) + start_idx = np.repeat(select_idxs, target.gm_len) * target.gm_len + select_idxs = l_range + start_idx + target.select_gms(select_idxs) + + target.finalize_glmb2lmb(sums, u[np.argmax(sums)], feat, time_step=k) + + # create birth tracks + self.apdative_birth(self.assign_prob, z, feat, model, k) + + def re_activate_tracks(self, z, feat, model, prob_birth): + if not self.use_feat: + return False + if len(self.prune_tracks) > 0: + track_features = np.asarray([target.feat for target in self.prune_tracks]) + feats_dist = cdist(track_features, feat[np.newaxis, :], metric='cosine') + if np.amin(feats_dist) < 0.25: # pruned track cannot update feature for few frames + idx = np.argmin(feats_dist) + tt = self.prune_tracks[idx] + gating = gate_meas_gms_idx(z[np.newaxis, :], feat[np.newaxis, :], model, tt.m, tt.P, tt.feat) + if len(gating) > 0: # associated measurement must be closed to a pruned track + tt.re_activate(z, feat, prob_birth) + self.tt_lmb.append(tt) + self.prune_tracks.remove(tt) + return True + false_meas = False + # first, checking whether new measurement overlap with existing tracks + ious = bbox_iou_xyah(z, self.tt_lmb_xyah) + iou_idx = np.nonzero(ious > 0.2)[0] + if len(iou_idx): # consider as overlap with any existing tracks + # second, compare re-id feature cdist with activating tracks + track_features = np.asarray([self.tt_lmb[idx].feat for idx in iou_idx]) + feats_dist = cdist(track_features, feat[np.newaxis, :], metric='cosine') + if np.amin(feats_dist) < 0.2: # consider two re-identification features are similar + # new measurement and an existing track have similar feature, ignore this measurement + false_meas = True + return false_meas + + def reappear_tracks(self, assign_prob, z, feat, b_idx, model): + re_activate = False + if len(self.prune_tracks) == 0 or len(feat) == 0: + return re_activate + track_features = np.asarray([target.feat for target in self.prune_tracks]) + tt_feat_dist = cdist(track_features, feat) + tt_feat_dist = 0.05 * tt_feat_dist * 2 + 0.95 * (2 - tt_feat_dist) * 2 + cost = tt_feat_dist * np.tile(1 - assign_prob, (len(self.prune_tracks), 1)) + assignment_index = lap.lapjv(-np.log(cost), extend_cost=True, cost_limit=-0.5) + b_idx_select = np.ones(len(b_idx), dtype=bool) + for tt_idx, meas_idx in enumerate(assignment_index[1]): + if meas_idx < 0: + continue + target = self.prune_tracks[tt_idx] + target.re_activate(z[meas_idx], feat[meas_idx], + min(model.prob_birth, cost[tt_idx, meas_idx] / np.sum(cost))) + self.tt_birth.append(target) + b_idx_select[meas_idx] = False + return b_idx_select + + def apdative_birth(self, assign_prob, z, feat, model, k): + not_assigned_sum = sum(1 - assign_prob) + np.spacing(1) # make sure this sum is not zero + b_idx = np.nonzero(assign_prob < self.model.b_thresh)[0] + self.tt_birth = [] + for idx, meas_idx in enumerate(b_idx): + # eq (75) "The Labeled Multi-Bernoulli Filter", Stephan Reuter∗, Ba-Tuong Vo, Ba-Ngu Vo, ... + prob_birth = min(model.prob_birth, (1 - assign_prob[meas_idx]) / not_assigned_sum * model.lambda_b) + prob_birth = max(prob_birth, np.spacing(1)) # avoid zero birth probability + + re_activate = self.re_activate_tracks(z[meas_idx], feat[meas_idx], model, prob_birth) + if re_activate: + continue + + target = Target(z[meas_idx], feat[meas_idx], prob_birth, self.id, self.use_feat) + self.id += 1 # or label = str(k + 1) + '.' + str(idx) + self.tt_birth.append(target) + # END + + def clean_lmb(self, model, tim_step): + # prune tracks with low existence probabilities + + # extract vector of existence probabilities from LMB track table + rvect = np.array([tt.r for tt in self.tt_lmb]) + + idxkeep = np.nonzero(rvect > model.track_threshold)[0] + tt_lmb_out = [self.tt_lmb[i] for i in idxkeep] + idxprune = np.nonzero(rvect <= model.track_threshold)[0] + self.prune_tracks = self.prune_tracks + [self.tt_lmb[i] for i in idxprune] + remove = [] + for t in self.prune_tracks: + if tim_step - t.last_active > 50: + remove.append(t) + for t in remove: + self.prune_tracks.remove(t) + + # cleanup tracks + for target in tt_lmb_out: + target.cleanup() + + self.tt_lmb = tt_lmb_out + + # END clean_lmb + + def extract_estimates(self): + # extract estimates via MAP cardinality and corresponding tracks + num_tracks = len(self.tt_lmb) + rvect = np.array([tt.r for tt in self.tt_lmb]) + rvect = np.minimum(rvect, 1. - 1e-6) + rvect = np.maximum(rvect, 1e-6) + # Calculate the cardinality distribution of the multi-Bernoulli RFS + cdn = esf(rvect / (1 - rvect)) # np.prod(1 - rvect) * esf(rvect / (1 - rvect)) + mode = np.argmax(cdn) + N = min(len(rvect), mode) + idxcmp = np.argsort(-rvect) + X, L = np.zeros((4, num_tracks)), np.zeros(num_tracks, dtype=int) + select_idx = 0 + for n in range(N): + select_target = self.tt_lmb[idxcmp[n]] + idxtrk = np.argmax(select_target.w) + X[:, select_idx] = select_target.m[:4, idxtrk] + L[select_idx] = select_target.l + select_idx += 1 + + # hysteresis, eq (71) "The Labeled Multi-Bernoulli Filter", Stephan Reuter∗, Ba-Tuong Vo, Ba-Ngu Vo, ... + for idxx in range(N, num_tracks): + select_target = self.tt_lmb[idxcmp[idxx]] + if select_target.r_max > 0.7 and select_target.r > 0.1: + idxtrk = np.argmax(select_target.w) + X[:, select_idx] = select_target.m[:4, idxtrk] + L[select_idx] = select_target.l + select_idx += 1 + X[2, :] = np.clip(X[2, :], 0.15, None) # constraint 'a' not to be negative + if select_idx > 0: + self.average_area = sum(X[2, :] * X[3, :] ** 2) / select_idx + return X[:, :select_idx], L[:select_idx] + + def update(self, fdets, img): + ##### + remain_inds = fdets[:, 4] > self.track_thresh + z, feat = fdets[remain_inds, 0:4], fdets[remain_inds, 5:] + # Input z : (n, 4), number of measurements and Top, Left, Bottom, Right of a bounding box + # Input feat : (n, reid_dim), z[i, :] has re-id feature feat[i, :], norm2 feature + # tlbr to cxcyah + z[:, 2:4] -= z[:, 0:2] + z[:, 0:2] += z[:, 2:4] / 2 + z[:, 2] = z[:, 2] / z[:, 3] + + # joint predict and update, results in GLMB, convert to LMB + self.jointlmbpredictupdate(self.model, z, feat, self.frame) + + # pruning, truncation and track cleanup + self.clean_lmb(self.model, self.frame) + + # state estimation + X, L = self.extract_estimates() + self.frame = self.frame + 1 + X[2, :] = X[2, :] * X[3, :] # xyah to xywh + X[0, :], X[1, :] = X[0, :] - X[2, :] / 2, X[1, :] - X[3, :] / 2 # xywh to tlwh + X[2, :], X[3, :] = X[0, :] + X[2, :], X[1, :] + X[3, :] # tlwh to tlrb + + return [Track(tid, X[:, idx], 1) for idx, tid in enumerate(L)] + # END diff --git a/trackers/joint_lmb/utils.py b/trackers/joint_lmb/utils.py new file mode 100644 index 0000000000000000000000000000000000000000..1c6cdf31c8f1e21316179590208f1b46954e5765 --- /dev/null +++ b/trackers/joint_lmb/utils.py @@ -0,0 +1,280 @@ +import numpy as np +from scipy.linalg import cholesky +from cpputils import Murty +from scipy.spatial.distance import cdist +from scipy.stats import multivariate_normal + + +def kalman_predict_multiple_noloop(model, m, P): + plength = m.shape[1] + + m_predict = model.F @ m + P_predict = np.stack([model.Q] * plength) + np.matmul((model.F @ P).transpose(2, 1, 0), model.F.T) + P_predict = P_predict.transpose(1, 2, 0) + + return m_predict, P_predict + +def kalman_update_multiple_noloop(z, model, m, P): + plength = m.shape[1] + P = P.transpose(2, 0, 1) + y = np.stack([z] * plength) - (model.H @ m).T + y = y[:, :, np.newaxis] + S = np.stack([model.R] * plength) + np.matmul(model.H @ P, model.H.T) + invS = np.linalg.inv(S) + K = np.matmul(P @ model.H.T, invS) + + mn = m + np.squeeze(K @ y, axis=2).T + Pn = P - np.matmul(K @ S, K.transpose(0, 2, 1)) + + yInvSy = np.squeeze(np.matmul(y.transpose(0, 2, 1), invS @ y), axis=(1, 2)) + qz = np.exp(-0.5 * len(z) * np.log(2 * np.pi) - 0.5 * np.log(np.linalg.det(S)) - 0.5 * yInvSy) + + return qz, mn, Pn.transpose(1,2,0) + +def kalman_predict_multiple(model, m, P): + plength = m.shape[1]; + + m_predict = np.zeros(m.shape); + P_predict = np.zeros(P.shape); + + for idxp in range(0, plength): + m_temp, P_temp = kalman_predict_single(model.F, model.Q, m[:, idxp], P[:, :, idxp]); + m_predict[:, idxp] = m_temp; + P_predict[:, :, idxp] = P_temp; + + return m_predict, P_predict + + +def kalman_predict_single(F, Q, m, P): + m_predict = np.dot(F, m) + P_predict = Q + np.dot(F, np.dot(P, F.T)) + return m_predict, P_predict + + +def gate_meas_gms_idx(z, feat, model, m, P, tt_feat): + zlength, plength = z.shape[0], m.shape[1] + if zlength == 0: + return np.empty(0) + valid_idx = np.zeros(zlength, dtype=bool) + cdist_tmp = cdist(feat, tt_feat[np.newaxis, :], metric='cosine').flatten() + for j in range(plength): + Sj = model.R + np.dot(np.dot(model.H, P[:, :, j]), model.H.T) + Vs = cholesky(Sj) + inv_sqrt_Sj = np.linalg.inv(Vs) + nu = z.T - np.tile(np.dot(model.H, m[:, j].reshape(-1, 1)), zlength) + dist = sum(np.square(np.dot(inv_sqrt_Sj, nu))) + + valid_idx_tmp = np.nonzero(np.logical_or(dist < model.gamma, cdist_tmp < 0.3))[0] + valid_idx[valid_idx_tmp] = True + + return np.nonzero(valid_idx)[0] + +def kalman_update_multiple(z, model, m, P): + plength = m.shape[1] + + qz_update = np.zeros(plength) + m_update = np.zeros((model.x_dim, plength)) + P_update = np.zeros((model.x_dim, model.x_dim, plength)) + + for idxp in range(0, plength): + qz_temp, m_temp, P_temp = kalman_update_single(z, model.H, model.R, m[:, idxp], P[:, :, idxp]) + qz_update[idxp] = qz_temp + m_update[:, idxp] = m_temp.flatten() + P_update[:, :, idxp] = P_temp + + return qz_update, m_update, P_update + + +def kalman_update_single(z, H, R, m, P): + mu = np.dot(H, m) + S = R + np.dot(np.dot(H, P), H.T) + Vs = np.linalg.cholesky(S); + # det_S = np.prod(np.diag(Vs)) ** 2; + inv_sqrt_S = np.linalg.inv(Vs); + iS = np.dot(inv_sqrt_S, inv_sqrt_S.T) + K = np.dot(np.dot(P, H.T), iS) + + z_mu = z - mu + qz_temp = multivariate_normal.pdf(z, mean=mu, cov=S) + m_temp = m + np.dot(K, z_mu) + P_temp = np.dot((np.eye(len(P)) - np.dot(K, H)), P) + + return qz_temp, m_temp, P_temp + +def gibbswrap_jointpredupdt_custom(P0, m): + n1 = P0.shape[0]; + + if m == 0: + m = 1 # return at least one solution + + assignments = np.zeros((m, n1)); + costs = np.zeros(m); + + currsoln = np.arange(n1, 2 * n1); # use all missed detections as initial solution + assignments[0, :] = currsoln; + costs[0] = sum(P0[np.arange(0, n1), currsoln]) + for sol in range(1, m): + for var in range(0, n1): + tempsamp = np.exp(-P0[var, :]); # grab row of costs for current association variable + # lock out current and previous iteration step assignments except for the one in question + tempsamp[np.delete(currsoln, var)] = 0; + idxold = np.nonzero(tempsamp > 0)[0]; + tempsamp = tempsamp[idxold]; + currsoln[var] = np.digitize(np.random.rand(1), np.concatenate(([0], np.cumsum(tempsamp) / sum(tempsamp)))); + currsoln[var] = idxold[currsoln[var]-1]; + assignments[sol, :] = currsoln; + costs[sol] = sum(P0[np.arange(0, n1), currsoln]) + C, I, _ = np.unique(assignments, return_index=True, return_inverse=True, axis=0); + assignments = C; + costs = costs[I]; + + return assignments, costs + + +def murty(P0, m): + n1 = P0.shape[0] + if n1 == 0: + return np.empty(0), np.empty(0) + mgen = Murty(P0) + assignments = np.zeros((m, n1)) + costs = np.zeros(m) + sol_idx = 0 + # for cost, assignment in murty(C_ext): + for sol in range(0, m): + ok, cost_m, assignment_m = mgen.draw() + if (not ok): + break + assignments[sol, :] = assignment_m + costs[sol] = cost_m + sol_idx += 1 + C, I, _ = np.unique(assignments[:sol_idx, :], return_index=True, return_inverse=True, axis=0) + assignments = C + costs = costs[I] + return assignments, costs + +def gaus_prune(w, x, P, elim_threshold): + idx = np.nonzero(w > elim_threshold)[0] + w_new = w[idx] + x_new = x[:, idx] + P_new = P[:, :, idx] + return w_new, x_new, P_new + + +def gaus_merge(w, x, P, threshold): + L = len(w) + x_dim, max_cmpt = x.shape[0], x.shape[1] + I = np.arange(L) + w_new, x_new, P_new = np.empty(max_cmpt), np.empty((x_dim, max_cmpt)), np.empty((x_dim, x_dim, max_cmpt)) + idx = 0 + if np.count_nonzero(w) == 0: + return w_new, x_new, P_new + + while len(I): + j = np.argmax(w) + Ij = np.empty(0, dtype=int) + iPt = np.linalg.inv(P[:, :, j]) + + for i in I: + xi_xj = x[:, i] - x[:, j] + val = np.dot(np.dot(xi_xj.T, iPt), xi_xj) + if val <= threshold: + Ij = np.append(Ij, i) + w_new_t = sum(w[Ij]) + x_new_t = np.sum(x[:, Ij] * w[Ij], axis=1) + P_new_t = np.sum(P[:, :, Ij] * w[Ij], axis=2) + + x_new_t = x_new_t / w_new_t + P_new_t = P_new_t / w_new_t + + w_new[idx] = w_new_t + x_new[:, idx] = x_new_t + P_new[:, :, idx] = P_new_t + idx += 1 + + I = np.setdiff1d(I, Ij) + w[Ij] = -1 + + return w_new[:idx], x_new[:, :idx], P_new[:, :, :idx] + +def gaus_cap(w, x, P, max_number): + if len(w) > max_number: + idx = np.argsort(-w) + w_new = w[idx[:max_number]] + w = w_new * (sum(w)/sum(w_new)) + x = x[:, idx[:max_number]] + P = P[:, :, idx[:max_number]] + return w, x, P + +def esf(Z): + """ + Calculate elementary symmetric function using Mahler's recursive formula + + cardinality 1: r1 + r2 + .. + rn + cardinality 2: r1*r2 + r1*3 + ... + r2*3 + .. + + Parameters + ---------- + Z: array_like + Input vector + + Returns + ------- + out: ndarray + """ + n_z = len(Z) + if n_z == 0: + return np.ones(1) + + F = np.zeros((2, n_z)) + i_n = 0 + i_n_minus = 1 + + for n in range(n_z): + F[i_n, 0] = F[i_n_minus, 0] + Z[n] + for k in range(1, n + 1): + if k == n: + F[i_n, k] = Z[n] * F[i_n_minus, k - 1] + else: + F[i_n, k] = F[i_n_minus, k] + Z[n] * F[i_n_minus, k - 1] + + i_n, i_n_minus = i_n_minus, i_n + + return np.concatenate((np.ones(1), F[i_n_minus, :])) + +if __name__ == '__main__': + + import os + from scipy.io import savemat + + if os.path.exists('./w.npy'): + w=np.load('w.npy') + x = np.load('x.npy') + P = np.load('P.npy') + else: + w = np.random.dirichlet(np.ones(10)) + x = np.random.rand(4, 10)*10 + P = np.random.rand(4,4,10)*10 + + savemat('w.mat', {'w':w}) + savemat('x.mat', {'x': x}) + savemat('P.mat', {'P': P}) + + np.save('w.npy', w) + np.save('x.npy', x) + np.save('P.npy', P) + + w,x,p = gaus_merge(w,x,P, 4) + # x = load('x.mat'); + # x = x.x; + # P = load('P.mat'); + # P = P.P; + # w = load('w.mat'); + # w = w.w; + # w = reshape(w, [10 1]); + # [wn, xn, pn] = gaus_merge(w, x, P, 4); + + P0 = np.array([[0.0304592074847086, np.inf, np.inf, np.inf, 7.41858090274813, np.inf, np.inf, np.inf, -0.345108847352739, np.inf, np.inf], + [np.inf, 0.0304592074847086, np.inf, np.inf, np.inf, 7.41858090274813, np.inf, np.inf, np.inf, -0.849090957754662, np.inf], + [np.inf, np.inf, 0.0304592074847086, np.inf, np.inf, np.inf, 7.41858090274813, np.inf, np.inf, np.inf, 1.64038243547480], + [np.inf, np.inf, np.inf, 0.0304592074847086, np.inf, np.inf, np.inf, 7.41858090274813, np.inf, np.inf, np.inf]]) + gibbswrap_jointpredupdt_custom(P0, 1000) \ No newline at end of file diff --git a/trackers/motdt/basetrack.py b/trackers/motdt/basetrack.py new file mode 100644 index 0000000000000000000000000000000000000000..f06729249983366b05dcd8acbc2dd9e3232d1b2d --- /dev/null +++ b/trackers/motdt/basetrack.py @@ -0,0 +1,56 @@ +import numpy as np +from collections import OrderedDict + + +class TrackState(object): + New = 0 + Tracked = 1 + Lost = 2 + Removed = 3 + Replaced = 4 + + +class BaseTrack(object): + _count = 0 + + track_id = 0 + is_activated = False + state = TrackState.New + + history = OrderedDict() + features = [] + curr_feature = None + score = 0 + start_frame = 0 + frame_id = 0 + time_since_update = 0 + + # multi-camera + location = (np.inf, np.inf) + + @property + def end_frame(self): + return self.frame_id + + @staticmethod + def next_id(): + BaseTrack._count += 1 + return BaseTrack._count + + def activate(self, *args): + raise NotImplementedError + + def predict(self): + raise NotImplementedError + + def update(self, *args, **kwargs): + raise NotImplementedError + + def mark_lost(self): + self.state = TrackState.Lost + + def mark_removed(self): + self.state = TrackState.Removed + + def mark_replaced(self): + self.state = TrackState.Replaced diff --git a/trackers/motdt/kalman_filter.py b/trackers/motdt/kalman_filter.py new file mode 100644 index 0000000000000000000000000000000000000000..496b937a9f76f726af37f00da53befd8d0bf59fb --- /dev/null +++ b/trackers/motdt/kalman_filter.py @@ -0,0 +1,272 @@ +# vim: expandtab:ts=4:sw=4 +import numpy as np +import scipy.linalg + + +""" +Table for the 0.95 quantile of the chi-square distribution with N degrees of +freedom (contains values for N=1, ..., 9). Taken from MATLAB/Octave's chi2inv +function and used as Mahalanobis gating threshold. +""" +chi2inv95 = { + 1: 3.8415, + 2: 5.9915, + 3: 7.8147, + 4: 9.4877, + 5: 11.070, + 6: 12.592, + 7: 14.067, + 8: 15.507, + 9: 16.919, +} + + +class KalmanFilter(object): + """ + A simple Kalman filter for tracking bounding boxes in image space. + + The 8-dimensional state space + + x, y, a, h, vx, vy, va, vh + + contains the bounding box center position (x, y), aspect ratio a, height h, + and their respective velocities. + + Object motion follows a constant velocity model. The bounding box location + (x, y, a, h) is taken as direct observation of the state space (linear + observation model). + + """ + + def __init__(self): + ndim, dt = 4, 1.0 + + # Create Kalman filter model matrices. + self._motion_mat = np.eye(2 * ndim, 2 * ndim) + for i in range(ndim): + self._motion_mat[i, ndim + i] = dt + self._update_mat = np.eye(ndim, 2 * ndim) + + # Motion and observation uncertainty are chosen relative to the current + # state estimate. These weights control the amount of uncertainty in + # the model. This is a bit hacky. + self._std_weight_position = 1.0 / 20 + self._std_weight_velocity = 1.0 / 160 + + def initiate(self, measurement): + """Create track from unassociated measurement. + + Parameters + ---------- + measurement : ndarray + Bounding box coordinates (x, y, a, h) with center position (x, y), + aspect ratio a, and height h. + + Returns + ------- + (ndarray, ndarray) + Returns the mean vector (8 dimensional) and covariance matrix (8x8 + dimensional) of the new track. Unobserved velocities are initialized + to 0 mean. + + """ + mean_pos = measurement + mean_vel = np.zeros_like(mean_pos) + mean = np.r_[mean_pos, mean_vel] + + std = [ + 2 * self._std_weight_position * measurement[3], + 2 * self._std_weight_position * measurement[3], + 1e-2, + 2 * self._std_weight_position * measurement[3], + 10 * self._std_weight_velocity * measurement[3], + 10 * self._std_weight_velocity * measurement[3], + 1e-5, + 10 * self._std_weight_velocity * measurement[3], + ] + covariance = np.diag(np.square(std)) + return mean, covariance + + def predict(self, mean, covariance): + """Run Kalman filter prediction step. + + Parameters + ---------- + mean : ndarray + The 8 dimensional mean vector of the object state at the previous + time step. + covariance : ndarray + The 8x8 dimensional covariance matrix of the object state at the + previous time step. + + Returns + ------- + (ndarray, ndarray) + Returns the mean vector and covariance matrix of the predicted + state. Unobserved velocities are initialized to 0 mean. + + """ + std_pos = [ + self._std_weight_position * mean[3], + self._std_weight_position * mean[3], + 1e-2, + self._std_weight_position * mean[3], + ] + std_vel = [ + self._std_weight_velocity * mean[3], + self._std_weight_velocity * mean[3], + 1e-5, + self._std_weight_velocity * mean[3], + ] + motion_cov = np.diag(np.square(np.r_[std_pos, std_vel])) + + # mean = np.dot(self._motion_mat, mean) + mean = np.dot(mean, self._motion_mat.T) + covariance = np.linalg.multi_dot((self._motion_mat, covariance, self._motion_mat.T)) + motion_cov + + return mean, covariance + + def project(self, mean, covariance): + """Project state distribution to measurement space. + + Parameters + ---------- + mean : ndarray + The state's mean vector (8 dimensional array). + covariance : ndarray + The state's covariance matrix (8x8 dimensional). + + Returns + ------- + (ndarray, ndarray) + Returns the projected mean and covariance matrix of the given state + estimate. + + """ + std = [ + self._std_weight_position * mean[3], + self._std_weight_position * mean[3], + 1e-1, + self._std_weight_position * mean[3], + ] + innovation_cov = np.diag(np.square(std)) + + mean = np.dot(self._update_mat, mean) + covariance = np.linalg.multi_dot((self._update_mat, covariance, self._update_mat.T)) + return mean, covariance + innovation_cov + + def multi_predict(self, mean, covariance): + """Run Kalman filter prediction step (Vectorized version). + Parameters + ---------- + mean : ndarray + The Nx8 dimensional mean matrix of the object states at the previous + time step. + covariance : ndarray + The Nx8x8 dimensional covariance matrics of the object states at the + previous time step. + Returns + ------- + (ndarray, ndarray) + Returns the mean vector and covariance matrix of the predicted + state. Unobserved velocities are initialized to 0 mean. + """ + std_pos = [ + self._std_weight_position * mean[:, 3], + self._std_weight_position * mean[:, 3], + 1e-2 * np.ones_like(mean[:, 3]), + self._std_weight_position * mean[:, 3], + ] + std_vel = [ + self._std_weight_velocity * mean[:, 3], + self._std_weight_velocity * mean[:, 3], + 1e-5 * np.ones_like(mean[:, 3]), + self._std_weight_velocity * mean[:, 3], + ] + sqr = np.square(np.r_[std_pos, std_vel]).T + + motion_cov = [] + for i in range(len(mean)): + motion_cov.append(np.diag(sqr[i])) + motion_cov = np.asarray(motion_cov) + + mean = np.dot(mean, self._motion_mat.T) + left = np.dot(self._motion_mat, covariance).transpose((1, 0, 2)) + covariance = np.dot(left, self._motion_mat.T) + motion_cov + + return mean, covariance + + def update(self, mean, covariance, measurement): + """Run Kalman filter correction step. + + Parameters + ---------- + mean : ndarray + The predicted state's mean vector (8 dimensional). + covariance : ndarray + The state's covariance matrix (8x8 dimensional). + measurement : ndarray + The 4 dimensional measurement vector (x, y, a, h), where (x, y) + is the center position, a the aspect ratio, and h the height of the + bounding box. + + Returns + ------- + (ndarray, ndarray) + Returns the measurement-corrected state distribution. + + """ + projected_mean, projected_cov = self.project(mean, covariance) + + chol_factor, lower = scipy.linalg.cho_factor(projected_cov, lower=True, check_finite=False) + kalman_gain = scipy.linalg.cho_solve( + (chol_factor, lower), + np.dot(covariance, self._update_mat.T).T, + check_finite=False, + ).T + innovation = measurement - projected_mean + + new_mean = mean + np.dot(innovation, kalman_gain.T) + new_covariance = covariance - np.linalg.multi_dot((kalman_gain, projected_cov, kalman_gain.T)) + return new_mean, new_covariance + + def gating_distance(self, mean, covariance, measurements, only_position=False, metric="maha"): + """Compute gating distance between state distribution and measurements. + A suitable distance threshold can be obtained from `chi2inv95`. If + `only_position` is False, the chi-square distribution has 4 degrees of + freedom, otherwise 2. + Parameters + ---------- + mean : ndarray + Mean vector over the state distribution (8 dimensional). + covariance : ndarray + Covariance of the state distribution (8x8 dimensional). + measurements : ndarray + An Nx4 dimensional matrix of N measurements, each in + format (x, y, a, h) where (x, y) is the bounding box center + position, a the aspect ratio, and h the height. + only_position : Optional[bool] + If True, distance computation is done with respect to the bounding + box center position only. + Returns + ------- + ndarray + Returns an array of length N, where the i-th element contains the + squared Mahalanobis distance between (mean, covariance) and + `measurements[i]`. + """ + mean, covariance = self.project(mean, covariance) + if only_position: + mean, covariance = mean[:2], covariance[:2, :2] + measurements = measurements[:, :2] + + d = measurements - mean + if metric == "gaussian": + return np.sum(d * d, axis=1) + elif metric == "maha": + cholesky_factor = np.linalg.cholesky(covariance) + z = scipy.linalg.solve_triangular(cholesky_factor, d.T, lower=True, check_finite=False, overwrite_b=True) + squared_maha = np.sum(z * z, axis=0) + return squared_maha + else: + raise ValueError("invalid distance metric") diff --git a/trackers/motdt/matching.py b/trackers/motdt/matching.py new file mode 100644 index 0000000000000000000000000000000000000000..bf43e0d17565cb6b406b7f25a58488727656ea3e --- /dev/null +++ b/trackers/motdt/matching.py @@ -0,0 +1,119 @@ +import cv2 +import numpy as np +import lap +from scipy.spatial.distance import cdist + +from cython_bbox import bbox_overlaps as bbox_ious +from . import kalman_filter + + +def _indices_to_matches(cost_matrix, indices, thresh): + matched_cost = cost_matrix[tuple(zip(*indices))] + matched_mask = matched_cost <= thresh + + matches = indices[matched_mask] + unmatched_a = tuple(set(range(cost_matrix.shape[0])) - set(matches[:, 0])) + unmatched_b = tuple(set(range(cost_matrix.shape[1])) - set(matches[:, 1])) + + return matches, unmatched_a, unmatched_b + + +def linear_assignment(cost_matrix, thresh): + if cost_matrix.size == 0: + return ( + np.empty((0, 2), dtype=int), + tuple(range(cost_matrix.shape[0])), + tuple(range(cost_matrix.shape[1])), + ) + matches, unmatched_a, unmatched_b = [], [], [] + cost, x, y = lap.lapjv(cost_matrix, extend_cost=True, cost_limit=thresh) + for ix, mx in enumerate(x): + if mx >= 0: + matches.append([ix, mx]) + unmatched_a = np.where(x < 0)[0] + unmatched_b = np.where(y < 0)[0] + matches = np.asarray(matches) + return matches, unmatched_a, unmatched_b + + +def ious(atlbrs, btlbrs): + """ + Compute cost based on IoU + :type atlbrs: list[tlbr] | np.ndarray + :type atlbrs: list[tlbr] | np.ndarray + :rtype ious np.ndarray + """ + ious = np.zeros((len(atlbrs), len(btlbrs)), dtype=np.float) + if ious.size == 0: + return ious + + ious = bbox_ious( + np.ascontiguousarray(atlbrs, dtype=np.float), + np.ascontiguousarray(btlbrs, dtype=np.float), + ) + + return ious + + +def iou_distance(atracks, btracks): + """ + Compute cost based on IoU + :type atracks: list[STrack] + :type btracks: list[STrack] + :rtype cost_matrix np.ndarray + """ + atlbrs = [track.tlbr for track in atracks] + btlbrs = [track.tlbr for track in btracks] + _ious = ious(atlbrs, btlbrs) + cost_matrix = 1 - _ious + + return cost_matrix + + +def nearest_reid_distance(tracks, detections, metric="cosine"): + """ + Compute cost based on ReID features + :type tracks: list[STrack] + :type detections: list[BaseTrack] + :rtype cost_matrix np.ndarray + """ + cost_matrix = np.zeros((len(tracks), len(detections)), dtype=np.float) + if cost_matrix.size == 0: + return cost_matrix + + det_features = np.asarray([track.curr_feature for track in detections], dtype=np.float32) + for i, track in enumerate(tracks): + cost_matrix[i, :] = np.maximum(0.0, cdist(track.features, det_features, metric).min(axis=0)) + + return cost_matrix + + +def mean_reid_distance(tracks, detections, metric="cosine"): + """ + Compute cost based on ReID features + :type tracks: list[STrack] + :type detections: list[BaseTrack] + :type metric: str + :rtype cost_matrix np.ndarray + """ + cost_matrix = np.empty((len(tracks), len(detections)), dtype=np.float) + if cost_matrix.size == 0: + return cost_matrix + + track_features = np.asarray([track.curr_feature for track in tracks], dtype=np.float32) + det_features = np.asarray([track.curr_feature for track in detections], dtype=np.float32) + cost_matrix = cdist(track_features, det_features, metric) + + return cost_matrix + + +def gate_cost_matrix(kf, cost_matrix, tracks, detections, only_position=False): + if cost_matrix.size == 0: + return cost_matrix + gating_dim = 2 if only_position else 4 + gating_threshold = kalman_filter.chi2inv95[gating_dim] + measurements = np.asarray([det.to_xyah() for det in detections]) + for row, track in enumerate(tracks): + gating_distance = kf.gating_distance(track.mean, track.covariance, measurements, only_position) + cost_matrix[row, gating_distance > gating_threshold] = np.inf + return cost_matrix diff --git a/trackers/motdt/motdt_tracker.py b/trackers/motdt/motdt_tracker.py new file mode 100644 index 0000000000000000000000000000000000000000..37485bcecf2f643a9f9276dad50f7fecf18d55f3 --- /dev/null +++ b/trackers/motdt/motdt_tracker.py @@ -0,0 +1,326 @@ +import numpy as np + +# from numba import jit +from collections import OrderedDict, deque +import itertools + +from . import matching +from .kalman_filter import KalmanFilter + +from .basetrack import BaseTrack, TrackState + + +class STrack(BaseTrack): + def __init__(self, tlwh, score, max_n_features=100, from_det=True): + + # wait activate + self._tlwh = np.asarray(tlwh, dtype=np.float) + self.kalman_filter = None + self.mean, self.covariance = None, None + self.is_activated = False + + self.score = score + self.max_n_features = max_n_features + self.curr_feature = None + self.last_feature = None + self.features = deque([], maxlen=self.max_n_features) + + # classification + self.from_det = from_det + self.tracklet_len = 0 + self.time_by_tracking = 0 + + # self-tracking + self.tracker = None + + def set_feature(self, feature): + if feature is None: + return False + self.features.append(feature) + self.curr_feature = feature + self.last_feature = feature + # self._p_feature = 0 + return True + + def predict(self): + if self.time_since_update > 0: + self.tracklet_len = 0 + + self.time_since_update += 1 + + mean_state = self.mean.copy() + if self.state != TrackState.Tracked: + mean_state[7] = 0 + self.mean, self.covariance = self.kalman_filter.predict(mean_state, self.covariance) + + if self.tracker: + self.tracker.update_roi(self.tlwh) + + def self_tracking(self, image): + tlwh = self.tracker.predict(image) if self.tracker else self.tlwh + return tlwh + + def activate(self, kalman_filter, frame_id): + """Start a new tracklet""" + self.kalman_filter = kalman_filter # type: KalmanFilter + self.track_id = self.next_id() + # cx, cy, aspect_ratio, height, dx, dy, da, dh + self.mean, self.covariance = self.kalman_filter.initiate(self.tlwh_to_xyah(self._tlwh)) + + # self.tracker = sot.SingleObjectTracker() + # self.tracker.init(image, self.tlwh) + + del self._tlwh + + self.time_since_update = 0 + self.time_by_tracking = 0 + self.tracklet_len = 0 + self.state = TrackState.Tracked + # self.is_activated = True + self.frame_id = frame_id + self.start_frame = frame_id + + def re_activate(self, new_track, frame_id, new_id=False): + # self.mean, self.covariance = self.kalman_filter.initiate(self.tlwh_to_xyah(new_track.tlwh)) + self.mean, self.covariance = self.kalman_filter.update( + self.mean, self.covariance, self.tlwh_to_xyah(new_track.tlwh) + ) + self.time_since_update = 0 + self.time_by_tracking = 0 + self.tracklet_len = 0 + self.state = TrackState.Tracked + self.is_activated = True + self.frame_id = frame_id + if new_id: + self.track_id = self.next_id() + + self.set_feature(new_track.curr_feature) + + def update(self, new_track, frame_id, update_feature=True): + """ + Update a matched track + :type new_track: STrack + :type frame_id: int + :type update_feature: bool + :return: + """ + self.frame_id = frame_id + self.time_since_update = 0 + if new_track.from_det: + self.time_by_tracking = 0 + else: + self.time_by_tracking += 1 + self.tracklet_len += 1 + + new_tlwh = new_track.tlwh + self.mean, self.covariance = self.kalman_filter.update(self.mean, self.covariance, self.tlwh_to_xyah(new_tlwh)) + self.state = TrackState.Tracked + self.is_activated = True + + self.score = new_track.score + + if update_feature: + self.set_feature(new_track.curr_feature) + # if self.tracker: + # self.tracker.update(image, self.tlwh) + + @property + # @jit + def tlwh(self): + """Get current position in bounding box format `(top left x, top left y, + width, height)`. + """ + if self.mean is None: + return self._tlwh.copy() + ret = self.mean[:4].copy() + ret[2] *= ret[3] + ret[:2] -= ret[2:] / 2 + return ret + + @property + # @jit + def tlbr(self): + """Convert bounding box to format `(min x, min y, max x, max y)`, i.e., + `(top left, bottom right)`. + """ + ret = self.tlwh.copy() + ret[2:] += ret[:2] + return ret + + @staticmethod + # @jit + def tlwh_to_xyah(tlwh): + """Convert bounding box to format `(center x, center y, aspect ratio, + height)`, where the aspect ratio is `width / height`. + """ + ret = np.asarray(tlwh).copy() + ret[:2] += ret[2:] / 2 + ret[2] /= ret[3] + return ret + + def to_xyah(self): + return self.tlwh_to_xyah(self.tlwh) + + def tracklet_score(self): + # score = (1 - np.exp(-0.6 * self.hit_streak)) * np.exp(-0.03 * self.time_by_tracking) + + score = max(0, 1 - np.log(1 + 0.05 * self.time_by_tracking)) * (self.tracklet_len - self.time_by_tracking > 2) + # score = max(0, 1 - np.log(1 + 0.05 * self.n_tracking)) * (1 - np.exp(-0.6 * self.hit_streak)) + return score + + def __repr__(self): + return "OT_{}_({}-{})".format(self.track_id, self.start_frame, self.end_frame) + + +class OnlineTracker(object): + def __init__( + self, + min_cls_score=0.4, + min_ap_dist=0.8, + max_time_lost=30, + use_tracking=False, + use_refind=True, + ): + + self.min_cls_score = min_cls_score + self.min_ap_dist = min_ap_dist + self.max_time_lost = max_time_lost + + self.kalman_filter = KalmanFilter() + + self.tracked_stracks = [] # type: list[STrack] + self.lost_stracks = [] # type: list[STrack] + self.removed_stracks = [] # type: list[STrack] + + self.use_refind = use_refind + self.use_tracking = use_tracking + self.classifier = None + # self.reid_model = load_reid_model(model_folder) + + self.frame_id = 0 + + def update(self, fdets, img): + ##### + remain_inds = fdets[:, 4] > self.min_cls_score + dets, det_scores, features = fdets[remain_inds, 0:4], fdets[remain_inds, 4], fdets[remain_inds, 5:] + tlwhs = self._xyxy_to_tlwh_array(dets) + self.frame_id += 1 + + activated_starcks = [] + refind_stracks = [] + lost_stracks = [] + removed_stracks = [] + + """step 1: prediction""" + for strack in itertools.chain(self.tracked_stracks, self.lost_stracks): + strack.predict() + + """step 2: scoring and selection""" + if det_scores is None: + det_scores = np.ones(len(tlwhs), dtype=float) + detections = [STrack(tlwh, score, from_det=True) for tlwh, score in zip(tlwhs, det_scores)] + if self.use_tracking: + tracks = [ + STrack(t.tlwh, 0.6 * t.tracklet_score(), from_det=False) + for t in itertools.chain(self.tracked_stracks, self.lost_stracks) + if t.is_activated + ] + detections.extend(tracks) + pred_dets = [d for d in detections if not d.from_det] + detections = [d for d in detections if d.from_det] + + # set features + for i, det in enumerate(detections): + det.set_feature(features[i]) + + """step 3: association for tracked""" + # matching for tracked targets + unconfirmed = [] + tracked_stracks = [] # type: list[STrack] + for track in self.tracked_stracks: + if not track.is_activated: + unconfirmed.append(track) + else: + tracked_stracks.append(track) + + dists = matching.nearest_reid_distance(tracked_stracks, detections, metric="euclidean") + dists = matching.gate_cost_matrix(self.kalman_filter, dists, tracked_stracks, detections) + matches, u_track, u_detection = matching.linear_assignment(dists, thresh=self.min_ap_dist) + for itracked, idet in matches: + tracked_stracks[itracked].update(detections[idet], self.frame_id) + + # matching for missing targets + detections = [detections[i] for i in u_detection] + dists = matching.nearest_reid_distance(self.lost_stracks, detections, metric="euclidean") + dists = matching.gate_cost_matrix(self.kalman_filter, dists, self.lost_stracks, detections) + matches, u_lost, u_detection = matching.linear_assignment(dists, thresh=self.min_ap_dist) + for ilost, idet in matches: + track = self.lost_stracks[ilost] # type: STrack + det = detections[idet] + track.re_activate(det, self.frame_id, new_id=not self.use_refind) + refind_stracks.append(track) + + # remaining tracked + # tracked + len_det = len(u_detection) + detections = [detections[i] for i in u_detection] + pred_dets + r_tracked_stracks = [tracked_stracks[i] for i in u_track] + dists = matching.iou_distance(r_tracked_stracks, detections) + matches, u_track, u_detection = matching.linear_assignment(dists, thresh=0.7) + for itracked, idet in matches: + r_tracked_stracks[itracked].update(detections[idet], self.frame_id, update_feature=True) + for it in u_track: + track = r_tracked_stracks[it] + track.mark_lost() + lost_stracks.append(track) + + # unconfirmed + detections = [detections[i] for i in u_detection if i < len_det] + dists = matching.iou_distance(unconfirmed, detections) + matches, u_unconfirmed, u_detection = matching.linear_assignment(dists, thresh=0.7) + for itracked, idet in matches: + unconfirmed[itracked].update(detections[idet], self.frame_id, update_feature=True) + for it in u_unconfirmed: + track = unconfirmed[it] + track.mark_removed() + removed_stracks.append(track) + + """step 4: init new stracks""" + for inew in u_detection: + track = detections[inew] + if not track.from_det or track.score < 0.6: + continue + track.activate(self.kalman_filter, self.frame_id) + activated_starcks.append(track) + + """step 6: update state""" + for track in self.lost_stracks: + if self.frame_id - track.end_frame > self.max_time_lost: + track.mark_removed() + removed_stracks.append(track) + + self.tracked_stracks = [t for t in self.tracked_stracks if t.state == TrackState.Tracked] + self.lost_stracks = [t for t in self.lost_stracks if t.state == TrackState.Lost] # type: list[STrack] + self.tracked_stracks.extend(activated_starcks) + self.tracked_stracks.extend(refind_stracks) + self.lost_stracks.extend(lost_stracks) + self.removed_stracks.extend(removed_stracks) + + # output_stracks = self.tracked_stracks + self.lost_stracks + + # get scores of lost tracks + output_tracked_stracks = [track for track in self.tracked_stracks if track.is_activated] + + output_stracks = output_tracked_stracks + + return output_stracks + + @staticmethod + def _xyxy_to_tlwh_array(bbox_xyxy): + if isinstance(bbox_xyxy, np.ndarray): + bbox_tlwh = bbox_xyxy.copy() + elif isinstance(bbox_xyxy, torch.Tensor): + bbox_tlwh = bbox_xyxy.clone() + bbox_tlwh[:, 2] = bbox_xyxy[:, 2] - bbox_xyxy[:, 0] + bbox_tlwh[:, 3] = bbox_xyxy[:, 3] - bbox_xyxy[:, 1] + return bbox_tlwh diff --git a/trackers/motdt/reid_model.py b/trackers/motdt/reid_model.py new file mode 100644 index 0000000000000000000000000000000000000000..59524296aeebd44feece10b31703e8f9103dfca7 --- /dev/null +++ b/trackers/motdt/reid_model.py @@ -0,0 +1,269 @@ +import cv2 +import numpy as np +import torch +from torch.autograd import Variable +import torch.nn.functional as F +import torch.nn as nn +import pickle +import os +from torch.nn.modules import CrossMapLRN2d as SpatialCrossMapLRN + +# from torch.legacy.nn import SpatialCrossMapLRN as SpatialCrossMapLRNOld +from torch.autograd import Function, Variable +from torch.nn import Module + + +def clip_boxes(boxes, im_shape): + """ + Clip boxes to image boundaries. + """ + boxes = np.asarray(boxes) + if boxes.shape[0] == 0: + return boxes + boxes = np.copy(boxes) + # x1 >= 0 + boxes[:, 0::4] = np.maximum(np.minimum(boxes[:, 0::4], im_shape[1] - 1), 0) + # y1 >= 0 + boxes[:, 1::4] = np.maximum(np.minimum(boxes[:, 1::4], im_shape[0] - 1), 0) + # x2 < im_shape[1] + boxes[:, 2::4] = np.maximum(np.minimum(boxes[:, 2::4], im_shape[1] - 1), 0) + # y2 < im_shape[0] + boxes[:, 3::4] = np.maximum(np.minimum(boxes[:, 3::4], im_shape[0] - 1), 0) + return boxes + + +def load_net(fname, net, prefix="", load_state_dict=False): + import h5py + + with h5py.File(fname, mode="r") as h5f: + h5f_is_module = True + for k in h5f.keys(): + if not str(k).startswith("module."): + h5f_is_module = False + break + if prefix == "" and not isinstance(net, nn.DataParallel) and h5f_is_module: + prefix = "module." + + for k, v in net.state_dict().items(): + k = prefix + k + if k in h5f: + param = torch.from_numpy(np.asarray(h5f[k])) + if v.size() != param.size(): + print("Inconsistent shape: {}, {}".format(v.size(), param.size())) + else: + v.copy_(param) + else: + print.warning("No layer: {}".format(k)) + + epoch = h5f.attrs["epoch"] if "epoch" in h5f.attrs else -1 + + if not load_state_dict: + if "learning_rates" in h5f.attrs: + lr = h5f.attrs["learning_rates"] + else: + lr = h5f.attrs.get("lr", -1) + lr = np.asarray([lr] if lr > 0 else [], dtype=np.float) + + return epoch, lr + + state_file = fname + ".optimizer_state.pk" + if os.path.isfile(state_file): + with open(state_file, "rb") as f: + state_dicts = pickle.load(f) + if not isinstance(state_dicts, list): + state_dicts = [state_dicts] + else: + state_dicts = None + return epoch, state_dicts + + +# class SpatialCrossMapLRNFunc(Function): + +# def __init__(self, size, alpha=1e-4, beta=0.75, k=1): +# self.size = size +# self.alpha = alpha +# self.beta = beta +# self.k = k + +# def forward(self, input): +# self.save_for_backward(input) +# self.lrn = SpatialCrossMapLRNOld(self.size, self.alpha, self.beta, self.k) +# self.lrn.type(input.type()) +# return self.lrn.forward(input) + +# def backward(self, grad_output): +# input, = self.saved_tensors +# return self.lrn.backward(input, grad_output) + + +# # use this one instead +# class SpatialCrossMapLRN(Module): +# def __init__(self, size, alpha=1e-4, beta=0.75, k=1): +# super(SpatialCrossMapLRN, self).__init__() +# self.size = size +# self.alpha = alpha +# self.beta = beta +# self.k = k + +# def forward(self, input): +# return SpatialCrossMapLRNFunc(self.size, self.alpha, self.beta, self.k)(input) + + +class Inception(nn.Module): + def __init__(self, in_planes, n1x1, n3x3red, n3x3, n5x5red, n5x5, pool_planes): + super(Inception, self).__init__() + # 1x1 conv branch + self.b1 = nn.Sequential( + nn.Conv2d(in_planes, n1x1, kernel_size=1), + nn.ReLU(True), + ) + + # 1x1 conv -> 3x3 conv branch + self.b2 = nn.Sequential( + nn.Conv2d(in_planes, n3x3red, kernel_size=1), + nn.ReLU(True), + nn.Conv2d(n3x3red, n3x3, kernel_size=3, padding=1), + nn.ReLU(True), + ) + + # 1x1 conv -> 5x5 conv branch + self.b3 = nn.Sequential( + nn.Conv2d(in_planes, n5x5red, kernel_size=1), + nn.ReLU(True), + nn.Conv2d(n5x5red, n5x5, kernel_size=5, padding=2), + nn.ReLU(True), + ) + + # 3x3 pool -> 1x1 conv branch + self.b4 = nn.Sequential( + nn.MaxPool2d(3, stride=1, padding=1), + nn.Conv2d(in_planes, pool_planes, kernel_size=1), + nn.ReLU(True), + ) + + def forward(self, x): + y1 = self.b1(x) + y2 = self.b2(x) + y3 = self.b3(x) + y4 = self.b4(x) + return torch.cat([y1, y2, y3, y4], 1) + + +class GoogLeNet(nn.Module): + + output_channels = 832 + + def __init__(self): + super(GoogLeNet, self).__init__() + self.pre_layers = nn.Sequential( + nn.Conv2d(3, 64, kernel_size=7, stride=2, padding=3), + nn.ReLU(True), + nn.MaxPool2d(3, stride=2, ceil_mode=True), + SpatialCrossMapLRN(5), + nn.Conv2d(64, 64, 1), + nn.ReLU(True), + nn.Conv2d(64, 192, 3, padding=1), + nn.ReLU(True), + SpatialCrossMapLRN(5), + nn.MaxPool2d(3, stride=2, ceil_mode=True), + ) + + self.a3 = Inception(192, 64, 96, 128, 16, 32, 32) + self.b3 = Inception(256, 128, 128, 192, 32, 96, 64) + + self.maxpool = nn.MaxPool2d(3, stride=2, ceil_mode=True) + + self.a4 = Inception(480, 192, 96, 208, 16, 48, 64) + self.b4 = Inception(512, 160, 112, 224, 24, 64, 64) + self.c4 = Inception(512, 128, 128, 256, 24, 64, 64) + self.d4 = Inception(512, 112, 144, 288, 32, 64, 64) + self.e4 = Inception(528, 256, 160, 320, 32, 128, 128) + + def forward(self, x): + out = self.pre_layers(x) + out = self.a3(out) + out = self.b3(out) + out = self.maxpool(out) + out = self.a4(out) + out = self.b4(out) + out = self.c4(out) + out = self.d4(out) + out = self.e4(out) + + return out + + +class Model(nn.Module): + def __init__(self, n_parts=8): + super(Model, self).__init__() + self.n_parts = n_parts + + self.feat_conv = GoogLeNet() + self.conv_input_feat = nn.Conv2d(self.feat_conv.output_channels, 512, 1) + + # part net + self.conv_att = nn.Conv2d(512, self.n_parts, 1) + + for i in range(self.n_parts): + setattr(self, "linear_feature{}".format(i + 1), nn.Linear(512, 64)) + + def forward(self, x): + feature = self.feat_conv(x) + feature = self.conv_input_feat(feature) + + att_weights = torch.sigmoid(self.conv_att(feature)) + + linear_feautres = [] + for i in range(self.n_parts): + masked_feature = feature * torch.unsqueeze(att_weights[:, i], 1) + pooled_feature = F.avg_pool2d(masked_feature, masked_feature.size()[2:4]) + linear_feautres.append( + getattr(self, "linear_feature{}".format(i + 1))(pooled_feature.view(pooled_feature.size(0), -1)) + ) + + concat_features = torch.cat(linear_feautres, 1) + normed_feature = concat_features / torch.clamp(torch.norm(concat_features, 2, 1, keepdim=True), min=1e-6) + + return normed_feature + + +def load_reid_model(ckpt): + model = Model(n_parts=8) + model.inp_size = (80, 160) + load_net(ckpt, model) + print("Load ReID model from {}".format(ckpt)) + + model = model.cuda() + model.eval() + return model + + +def im_preprocess(image): + image = np.asarray(image, np.float32) + image -= np.array([104, 117, 123], dtype=np.float32).reshape(1, 1, -1) + image = image.transpose((2, 0, 1)) + return image + + +def extract_image_patches(image, bboxes): + bboxes = np.round(bboxes).astype(np.int) + bboxes = clip_boxes(bboxes, image.shape) + patches = [image[box[1] : box[3], box[0] : box[2]] for box in bboxes] + return patches + + +def extract_reid_features(reid_model, image, tlbrs): + if len(tlbrs) == 0: + return torch.FloatTensor() + + patches = extract_image_patches(image, tlbrs) + patches = np.asarray( + [im_preprocess(cv2.resize(p, reid_model.inp_size)) for p in patches], + dtype=np.float32, + ) + + with torch.no_grad(): + im_var = Variable(torch.from_numpy(patches)) + im_var = im_var.cuda() + features = reid_model(im_var).data + return features diff --git a/trackers/ocsort/association.py b/trackers/ocsort/association.py new file mode 100644 index 0000000000000000000000000000000000000000..c40d009cd2dc235a5c41998bc8b6de83ae2e5cc5 --- /dev/null +++ b/trackers/ocsort/association.py @@ -0,0 +1,379 @@ +import os +import numpy as np + + +def iou_batch(bboxes1, bboxes2): + """ + From SORT: Computes IOU between two bboxes in the form [x1,y1,x2,y2] + """ + bboxes2 = np.expand_dims(bboxes2, 0) + bboxes1 = np.expand_dims(bboxes1, 1) + + xx1 = np.maximum(bboxes1[..., 0], bboxes2[..., 0]) + yy1 = np.maximum(bboxes1[..., 1], bboxes2[..., 1]) + xx2 = np.minimum(bboxes1[..., 2], bboxes2[..., 2]) + yy2 = np.minimum(bboxes1[..., 3], bboxes2[..., 3]) + w = np.maximum(0., xx2 - xx1) + h = np.maximum(0., yy2 - yy1) + wh = w * h + o = wh / ((bboxes1[..., 2] - bboxes1[..., 0]) * (bboxes1[..., 3] - bboxes1[..., 1]) + + (bboxes2[..., 2] - bboxes2[..., 0]) * (bboxes2[..., 3] - bboxes2[..., 1]) - wh) + return(o) + + +def giou_batch(bboxes1, bboxes2): + """ + :param bbox_p: predict of bbox(N,4)(x1,y1,x2,y2) + :param bbox_g: groundtruth of bbox(N,4)(x1,y1,x2,y2) + :return: + """ + # for details should go to https://arxiv.org/pdf/1902.09630.pdf + # ensure predict's bbox form + bboxes2 = np.expand_dims(bboxes2, 0) + bboxes1 = np.expand_dims(bboxes1, 1) + + xx1 = np.maximum(bboxes1[..., 0], bboxes2[..., 0]) + yy1 = np.maximum(bboxes1[..., 1], bboxes2[..., 1]) + xx2 = np.minimum(bboxes1[..., 2], bboxes2[..., 2]) + yy2 = np.minimum(bboxes1[..., 3], bboxes2[..., 3]) + w = np.maximum(0., xx2 - xx1) + h = np.maximum(0., yy2 - yy1) + wh = w * h + union = ((bboxes1[..., 2] - bboxes1[..., 0]) * (bboxes1[..., 3] - bboxes1[..., 1]) + + (bboxes2[..., 2] - bboxes2[..., 0]) * (bboxes2[..., 3] - bboxes2[..., 1]) - wh) + iou = wh / union + + xxc1 = np.minimum(bboxes1[..., 0], bboxes2[..., 0]) + yyc1 = np.minimum(bboxes1[..., 1], bboxes2[..., 1]) + xxc2 = np.maximum(bboxes1[..., 2], bboxes2[..., 2]) + yyc2 = np.maximum(bboxes1[..., 3], bboxes2[..., 3]) + wc = xxc2 - xxc1 + hc = yyc2 - yyc1 + assert((wc > 0).all() and (hc > 0).all()) + area_enclose = wc * hc + giou = iou - (area_enclose - union) / area_enclose + giou = (giou + 1.)/2.0 # resize from (-1,1) to (0,1) + return giou + + +def diou_batch(bboxes1, bboxes2): + """ + :param bbox_p: predict of bbox(N,4)(x1,y1,x2,y2) + :param bbox_g: groundtruth of bbox(N,4)(x1,y1,x2,y2) + :return: + """ + # for details should go to https://arxiv.org/pdf/1902.09630.pdf + # ensure predict's bbox form + bboxes2 = np.expand_dims(bboxes2, 0) + bboxes1 = np.expand_dims(bboxes1, 1) + + # calculate the intersection box + xx1 = np.maximum(bboxes1[..., 0], bboxes2[..., 0]) + yy1 = np.maximum(bboxes1[..., 1], bboxes2[..., 1]) + xx2 = np.minimum(bboxes1[..., 2], bboxes2[..., 2]) + yy2 = np.minimum(bboxes1[..., 3], bboxes2[..., 3]) + w = np.maximum(0., xx2 - xx1) + h = np.maximum(0., yy2 - yy1) + wh = w * h + union = ((bboxes1[..., 2] - bboxes1[..., 0]) * (bboxes1[..., 3] - bboxes1[..., 1]) + + (bboxes2[..., 2] - bboxes2[..., 0]) * (bboxes2[..., 3] - bboxes2[..., 1]) - wh) + iou = wh / union + centerx1 = (bboxes1[..., 0] + bboxes1[..., 2]) / 2.0 + centery1 = (bboxes1[..., 1] + bboxes1[..., 3]) / 2.0 + centerx2 = (bboxes2[..., 0] + bboxes2[..., 2]) / 2.0 + centery2 = (bboxes2[..., 1] + bboxes2[..., 3]) / 2.0 + + inner_diag = (centerx1 - centerx2) ** 2 + (centery1 - centery2) ** 2 + + xxc1 = np.minimum(bboxes1[..., 0], bboxes2[..., 0]) + yyc1 = np.minimum(bboxes1[..., 1], bboxes2[..., 1]) + xxc2 = np.maximum(bboxes1[..., 2], bboxes2[..., 2]) + yyc2 = np.maximum(bboxes1[..., 3], bboxes2[..., 3]) + + outer_diag = (xxc2 - xxc1) ** 2 + (yyc2 - yyc1) ** 2 + diou = iou - inner_diag / outer_diag + + return (diou + 1) / 2.0 # resize from (-1,1) to (0,1) + +def ciou_batch(bboxes1, bboxes2): + """ + :param bbox_p: predict of bbox(N,4)(x1,y1,x2,y2) + :param bbox_g: groundtruth of bbox(N,4)(x1,y1,x2,y2) + :return: + """ + # for details should go to https://arxiv.org/pdf/1902.09630.pdf + # ensure predict's bbox form + bboxes2 = np.expand_dims(bboxes2, 0) + bboxes1 = np.expand_dims(bboxes1, 1) + + # calculate the intersection box + xx1 = np.maximum(bboxes1[..., 0], bboxes2[..., 0]) + yy1 = np.maximum(bboxes1[..., 1], bboxes2[..., 1]) + xx2 = np.minimum(bboxes1[..., 2], bboxes2[..., 2]) + yy2 = np.minimum(bboxes1[..., 3], bboxes2[..., 3]) + w = np.maximum(0., xx2 - xx1) + h = np.maximum(0., yy2 - yy1) + wh = w * h + union = ((bboxes1[..., 2] - bboxes1[..., 0]) * (bboxes1[..., 3] - bboxes1[..., 1]) + + (bboxes2[..., 2] - bboxes2[..., 0]) * (bboxes2[..., 3] - bboxes2[..., 1]) - wh) + iou = wh / union + + centerx1 = (bboxes1[..., 0] + bboxes1[..., 2]) / 2.0 + centery1 = (bboxes1[..., 1] + bboxes1[..., 3]) / 2.0 + centerx2 = (bboxes2[..., 0] + bboxes2[..., 2]) / 2.0 + centery2 = (bboxes2[..., 1] + bboxes2[..., 3]) / 2.0 + + inner_diag = (centerx1 - centerx2) ** 2 + (centery1 - centery2) ** 2 + + xxc1 = np.minimum(bboxes1[..., 0], bboxes2[..., 0]) + yyc1 = np.minimum(bboxes1[..., 1], bboxes2[..., 1]) + xxc2 = np.maximum(bboxes1[..., 2], bboxes2[..., 2]) + yyc2 = np.maximum(bboxes1[..., 3], bboxes2[..., 3]) + + outer_diag = (xxc2 - xxc1) ** 2 + (yyc2 - yyc1) ** 2 + + w1 = bboxes1[..., 2] - bboxes1[..., 0] + h1 = bboxes1[..., 3] - bboxes1[..., 1] + w2 = bboxes2[..., 2] - bboxes2[..., 0] + h2 = bboxes2[..., 3] - bboxes2[..., 1] + + # prevent dividing over zero. add one pixel shift + h2 = h2 + 1. + h1 = h1 + 1. + arctan = np.arctan(w2/h2) - np.arctan(w1/h1) + v = (4 / (np.pi ** 2)) * (arctan ** 2) + S = 1 - iou + alpha = v / (S+v) + ciou = iou - inner_diag / outer_diag - alpha * v + + return (ciou + 1) / 2.0 # resize from (-1,1) to (0,1) + + +def ct_dist(bboxes1, bboxes2): + """ + Measure the center distance between two sets of bounding boxes, + this is a coarse implementation, we don't recommend using it only + for association, which can be unstable and sensitive to frame rate + and object speed. + """ + bboxes2 = np.expand_dims(bboxes2, 0) + bboxes1 = np.expand_dims(bboxes1, 1) + + centerx1 = (bboxes1[..., 0] + bboxes1[..., 2]) / 2.0 + centery1 = (bboxes1[..., 1] + bboxes1[..., 3]) / 2.0 + centerx2 = (bboxes2[..., 0] + bboxes2[..., 2]) / 2.0 + centery2 = (bboxes2[..., 1] + bboxes2[..., 3]) / 2.0 + + ct_dist2 = (centerx1 - centerx2) ** 2 + (centery1 - centery2) ** 2 + + ct_dist = np.sqrt(ct_dist2) + + # The linear rescaling is a naive version and needs more study + ct_dist = ct_dist / ct_dist.max() + return ct_dist.max() - ct_dist # resize to (0,1) + + + +def speed_direction_batch(dets, tracks): + tracks = tracks[..., np.newaxis] + CX1, CY1 = (dets[:,0] + dets[:,2])/2.0, (dets[:,1]+dets[:,3])/2.0 + CX2, CY2 = (tracks[:,0] + tracks[:,2]) /2.0, (tracks[:,1]+tracks[:,3])/2.0 + dx = CX1 - CX2 + dy = CY1 - CY2 + norm = np.sqrt(dx**2 + dy**2) + 1e-6 + dx = dx / norm + dy = dy / norm + return dy, dx # size: num_track x num_det + + +def linear_assignment(cost_matrix): + try: + import lap + _, x, y = lap.lapjv(cost_matrix, extend_cost=True) + return np.array([[y[i],i] for i in x if i >= 0]) # + except ImportError: + from scipy.optimize import linear_sum_assignment + x, y = linear_sum_assignment(cost_matrix) + return np.array(list(zip(x, y))) + + +def associate_detections_to_trackers(detections,trackers,iou_threshold = 0.3): + """ + Assigns detections to tracked object (both represented as bounding boxes) + Returns 3 lists of matches, unmatched_detections and unmatched_trackers + """ + if(len(trackers)==0): + return np.empty((0,2),dtype=int), np.arange(len(detections)), np.empty((0,5),dtype=int) + + iou_matrix = iou_batch(detections, trackers) + + if min(iou_matrix.shape) > 0: + a = (iou_matrix > iou_threshold).astype(np.int32) + if a.sum(1).max() == 1 and a.sum(0).max() == 1: + matched_indices = np.stack(np.where(a), axis=1) + else: + matched_indices = linear_assignment(-iou_matrix) + else: + matched_indices = np.empty(shape=(0,2)) + + unmatched_detections = [] + for d, det in enumerate(detections): + if(d not in matched_indices[:,0]): + unmatched_detections.append(d) + unmatched_trackers = [] + for t, trk in enumerate(trackers): + if(t not in matched_indices[:,1]): + unmatched_trackers.append(t) + + #filter out matched with low IOU + matches = [] + for m in matched_indices: + if(iou_matrix[m[0], m[1]] 0: + a = (iou_matrix > iou_threshold).astype(np.int32) + if a.sum(1).max() == 1 and a.sum(0).max() == 1: + matched_indices = np.stack(np.where(a), axis=1) + else: + matched_indices = linear_assignment(-(iou_matrix+angle_diff_cost)) + else: + matched_indices = np.empty(shape=(0,2)) + + unmatched_detections = [] + for d, det in enumerate(detections): + if(d not in matched_indices[:,0]): + unmatched_detections.append(d) + unmatched_trackers = [] + for t, trk in enumerate(trackers): + if(t not in matched_indices[:,1]): + unmatched_trackers.append(t) + + # filter out matched with low IOU + matches = [] + for m in matched_indices: + if(iou_matrix[m[0], m[1]] 0: + a = (iou_matrix > iou_threshold).astype(np.int32) + if a.sum(1).max() == 1 and a.sum(0).max() == 1: + matched_indices = np.stack(np.where(a), axis=1) + else: + matched_indices = linear_assignment(cost_matrix) + else: + matched_indices = np.empty(shape=(0,2)) + + unmatched_detections = [] + for d, det in enumerate(detections): + if(d not in matched_indices[:,0]): + unmatched_detections.append(d) + unmatched_trackers = [] + for t, trk in enumerate(trackers): + if(t not in matched_indices[:,1]): + unmatched_trackers.append(t) + + #filter out matched with low IOU + matches = [] + for m in matched_indices: + if(iou_matrix[m[0], m[1]] 1.0: + frame = cv2.GaussianBlur(frame, (3, 3), 1.5) + frame = cv2.resize(frame, (width // self.downscale, height // self.downscale)) + width = width // self.downscale + height = height // self.downscale + + # Handle first frame + if not self.initializedFirstFrame: + # Initialize data + self.prevFrame = frame.copy() + + # Initialization done + self.initializedFirstFrame = True + + return H + + # Run the ECC algorithm. The results are stored in warp_matrix. + # (cc, H) = cv2.findTransformECC(self.prevFrame, frame, H, self.warp_mode, self.criteria) + try: + (cc, H) = cv2.findTransformECC(self.prevFrame, frame, H, self.warp_mode, self.criteria, None, 1) + except: + print('Warning: find transform failed. Set warp as identity') + + return H + + def applyFeaures(self, raw_frame, detections=None): + + # Initialize + height, width, _ = raw_frame.shape + frame = cv2.cvtColor(raw_frame, cv2.COLOR_BGR2GRAY) + H = np.eye(2, 3) + + # Downscale image (TODO: consider using pyramids) + if self.downscale > 1.0: + # frame = cv2.GaussianBlur(frame, (3, 3), 1.5) + frame = cv2.resize(frame, (width // self.downscale, height // self.downscale)) + width = width // self.downscale + height = height // self.downscale + + # find the keypoints + mask = np.zeros_like(frame) + # mask[int(0.05 * height): int(0.95 * height), int(0.05 * width): int(0.95 * width)] = 255 + mask[int(0.02 * height): int(0.98 * height), int(0.02 * width): int(0.98 * width)] = 255 + if detections is not None: + for det in detections: + tlbr = (det[:4] / self.downscale).astype(np.int_) + mask[tlbr[1]:tlbr[3], tlbr[0]:tlbr[2]] = 0 + + keypoints = self.detector.detect(frame, mask) + + # compute the descriptors + keypoints, descriptors = self.extractor.compute(frame, keypoints) + + # Handle first frame + if not self.initializedFirstFrame: + # Initialize data + self.prevFrame = frame.copy() + self.prevKeyPoints = copy.copy(keypoints) + self.prevDescriptors = copy.copy(descriptors) + + # Initialization done + self.initializedFirstFrame = True + + return H + + # Match descriptors. + knnMatches = self.matcher.knnMatch(self.prevDescriptors, descriptors, 2) + + # Filtered matches based on smallest spatial distance + matches = [] + spatialDistances = [] + + maxSpatialDistance = 0.25 * np.array([width, height]) + + # Handle empty matches case + if len(knnMatches) == 0: + # Store to next iteration + self.prevFrame = frame.copy() + self.prevKeyPoints = copy.copy(keypoints) + self.prevDescriptors = copy.copy(descriptors) + + return H + + for m, n in knnMatches: + if m.distance < 0.9 * n.distance: + prevKeyPointLocation = self.prevKeyPoints[m.queryIdx].pt + currKeyPointLocation = keypoints[m.trainIdx].pt + + spatialDistance = (prevKeyPointLocation[0] - currKeyPointLocation[0], + prevKeyPointLocation[1] - currKeyPointLocation[1]) + + if (np.abs(spatialDistance[0]) < maxSpatialDistance[0]) and \ + (np.abs(spatialDistance[1]) < maxSpatialDistance[1]): + spatialDistances.append(spatialDistance) + matches.append(m) + + meanSpatialDistances = np.mean(spatialDistances, 0) + stdSpatialDistances = np.std(spatialDistances, 0) + + inliesrs = (spatialDistances - meanSpatialDistances) < 2.5 * stdSpatialDistances + + goodMatches = [] + prevPoints = [] + currPoints = [] + for i in range(len(matches)): + if inliesrs[i, 0] and inliesrs[i, 1]: + goodMatches.append(matches[i]) + prevPoints.append(self.prevKeyPoints[matches[i].queryIdx].pt) + currPoints.append(keypoints[matches[i].trainIdx].pt) + + prevPoints = np.array(prevPoints) + currPoints = np.array(currPoints) + + # Draw the keypoint matches on the output image + if 0: + matches_img = np.hstack((self.prevFrame, frame)) + matches_img = cv2.cvtColor(matches_img, cv2.COLOR_GRAY2BGR) + W = np.size(self.prevFrame, 1) + for m in goodMatches: + prev_pt = np.array(self.prevKeyPoints[m.queryIdx].pt, dtype=np.int_) + curr_pt = np.array(keypoints[m.trainIdx].pt, dtype=np.int_) + curr_pt[0] += W + color = np.random.randint(0, 255, (3,)) + color = (int(color[0]), int(color[1]), int(color[2])) + + matches_img = cv2.line(matches_img, prev_pt, curr_pt, tuple(color), 1, cv2.LINE_AA) + matches_img = cv2.circle(matches_img, prev_pt, 2, tuple(color), -1) + matches_img = cv2.circle(matches_img, curr_pt, 2, tuple(color), -1) + + plt.figure() + plt.imshow(matches_img) + plt.show() + + # Find rigid matrix + if (np.size(prevPoints, 0) > 4) and (np.size(prevPoints, 0) == np.size(prevPoints, 0)): + H, inliesrs = cv2.estimateAffinePartial2D(prevPoints, currPoints, cv2.RANSAC) + + # Handle downscale + if self.downscale > 1.0: + H[0, 2] *= self.downscale + H[1, 2] *= self.downscale + else: + print('Warning: not enough matching points') + + # Store to next iteration + self.prevFrame = frame.copy() + self.prevKeyPoints = copy.copy(keypoints) + self.prevDescriptors = copy.copy(descriptors) + + return H + + def applySparseOptFlow(self, raw_frame, detections=None): + + t0 = time.time() + + # Initialize + height, width, _ = raw_frame.shape + frame = cv2.cvtColor(raw_frame, cv2.COLOR_BGR2GRAY) + H = np.eye(2, 3) + + # Downscale image + if self.downscale > 1.0: + # frame = cv2.GaussianBlur(frame, (3, 3), 1.5) + frame = cv2.resize(frame, (width // self.downscale, height // self.downscale)) + + # find the keypoints + keypoints = cv2.goodFeaturesToTrack(frame, mask=None, **self.feature_params) + + # Handle first frame + if not self.initializedFirstFrame: + # Initialize data + self.prevFrame = frame.copy() + self.prevKeyPoints = copy.copy(keypoints) + + # Initialization done + self.initializedFirstFrame = True + + return H + + # find correspondences + matchedKeypoints, status, err = cv2.calcOpticalFlowPyrLK(self.prevFrame, frame, self.prevKeyPoints, None) + + # leave good correspondences only + prevPoints = [] + currPoints = [] + + for i in range(len(status)): + if status[i]: + prevPoints.append(self.prevKeyPoints[i]) + currPoints.append(matchedKeypoints[i]) + + prevPoints = np.array(prevPoints) + currPoints = np.array(currPoints) + + # Find rigid matrix + if (np.size(prevPoints, 0) > 4) and (np.size(prevPoints, 0) == np.size(prevPoints, 0)): + H, inliesrs = cv2.estimateAffinePartial2D(prevPoints, currPoints, cv2.RANSAC) + + # Handle downscale + if self.downscale > 1.0: + H[0, 2] *= self.downscale + H[1, 2] *= self.downscale + else: + print('Warning: not enough matching points') + + # Store to next iteration + self.prevFrame = frame.copy() + self.prevKeyPoints = copy.copy(keypoints) + + t1 = time.time() + + # gmc_line = str(1000 * (t1 - t0)) + "\t" + str(H[0, 0]) + "\t" + str(H[0, 1]) + "\t" + str( + # H[0, 2]) + "\t" + str(H[1, 0]) + "\t" + str(H[1, 1]) + "\t" + str(H[1, 2]) + "\n" + # self.gmc_file.write(gmc_line) + + return H + + def applyFile(self, raw_frame, detections=None): + line = self.gmcFile.readline() + tokens = line.split("\t") + H = np.eye(2, 3, dtype=np.float_) + H[0, 0] = float(tokens[1]) + H[0, 1] = float(tokens[2]) + H[0, 2] = float(tokens[3]) + H[1, 0] = float(tokens[4]) + H[1, 1] = float(tokens[5]) + H[1, 2] = float(tokens[6]) + + return H + + def applyCMC(self, frame): + # Convert frame to grayscale + curr_gray = cv2.cvtColor(frame, cv2.COLOR_BGR2GRAY) + + # Handle first frame + if not self.initializedFirstFrame: + # Initialization + self.initializedFirstFrame = True + self.prev_gray = np.copy(curr_gray) + return np.eye(2, 3, dtype=np.float32) # Return identity matrix for the first frame + + # Detect feature points in previous frame + prev_pts = cv2.goodFeaturesToTrack(self.prev_gray, maxCorners=200, qualityLevel=0.01, minDistance=30, + blockSize=3) + # Calculate optical flow (i.e. track feature points) + curr_pts, status, err = cv2.calcOpticalFlowPyrLK(self.prev_gray, curr_gray, prev_pts, None) + + if curr_pts is None: + return np.eye(2, 3) # Return identity matrix if no good points are found + + # Sanity check + assert prev_pts.shape == curr_pts.shape + # Filter only valid points + idx = np.where(status == 1)[0] + prev_pts = prev_pts[idx] + curr_pts = curr_pts[idx] + # Find transformation matrix + # m, inliers = cv2.estimateAffinePartial2D(prev_pts, curr_pts) + m, inliers = cv2.estimateAffine2D(prev_pts, curr_pts) + # Update the previous frame and points + self.prev_gray = np.copy(curr_gray) + + # Determine camera movement + translation_magnitude = np.sqrt(m[0, 2] ** 2 + m[1, 2] ** 2) + scaling_factor = np.linalg.det(m[:, :2]) + + # Check if camera has moved based on thresholds + if translation_magnitude < 1.0 and abs(scaling_factor - 1) < 0.1: + # print("No significant camera movement") + return np.eye(2, 3) + + return m if m is not None else np.eye(2, 3) # If estimation fails, return identity matrix