#!/bin/bash # Reusable, resumable Hugging Face release upload for liofoil/copuladock. # # Submit only after reviewing the staging tree. Authentication may come from # HF_TOKEN in the submission environment or a token saved by # `huggingface_hub.login()`; never put a token in this file. # sbatch upload_copuladock.sbatch # # If a network transfer is interrupted, submit the same script again. Do not # remove hf_stage_copuladock/: huggingface_hub retains its upload state there. #SBATCH --account=bghp-delta-cpu #SBATCH --partition=cpu #SBATCH --nodes=1 #SBATCH --ntasks-per-node=1 #SBATCH --cpus-per-task=8 #SBATCH --mem=32G #SBATCH --time=2-00:00:00 #SBATCH --job-name=copuladock_hf_upload #SBATCH --output=/work/nvme/bghp/hhao/gnncp/release_copuladock/copuladock_hf_upload_%j.out #SBATCH --error=/work/nvme/bghp/hhao/gnncp/release_copuladock/copuladock_hf_upload_%j.err #SBATCH --open-mode=append #SBATCH --mail-type=FAIL,END set -Eeuo pipefail umask 007 readonly RELEASE_ROOT=/work/nvme/bghp/hhao/gnncp/release_copuladock readonly PYTHON=/u/hhao/anaconda3/envs/hgf/bin/python readonly UPLOAD_WORKERS="${UPLOAD_WORKERS:-8}" finish() { local rc=$? echo "[$(date --iso-8601=seconds)] job=${SLURM_JOB_ID:-unknown} exit=${rc}" } trap finish EXIT test -x "${PYTHON}" test -r "${RELEASE_ROOT}/upload_copuladock.py" echo "[$(date --iso-8601=seconds)] host=$(hostname) workers=${UPLOAD_WORKERS}" "${PYTHON}" "${RELEASE_ROOT}/upload_copuladock.py" \ --prepare --verify --upload --num-workers "${UPLOAD_WORKERS}"