Add training library: frozen homology-cold splits, audits, evaluation artifacts, and v10 release archive
Browse files- .gitattributes +2 -0
- README.md +170 -0
- RECONSTRUCTION.md +115 -0
- configs/data_license_inventory.json +227 -0
- configs/temporal_absolute_kinetics_protocol.json +85 -0
- configs/unikp_source_manifest.json +18 -0
- data/absolute-activity-training-blocker-audit.json +265 -0
- data/enzengdb-v1/audit-homology-cold.json +113 -0
- data/enzengdb-v1/audit.json +147 -0
- data/enzengdb-v1/rank-split/campaign_representatives.fasta +274 -0
- data/enzengdb-v1/rank-split/rank_split.json +0 -0
- data/enzengdb-v1/ranker-three-seed-summary.json +75 -0
- data/enzengdb-v1/selection-homology-cold.json +0 -0
- data/enzengdb-v1/selection.json +0 -0
- data/enzengdb-v1/zero-shot-kcat-proxy.json +538 -0
- data/full-homology-baseline/test_metrics.json +53 -0
- data/homology_split.json +0 -0
- data/homology_split.parquet +3 -0
- data/lunzer-imdh/biocandidate-full-evaluation.json +0 -0
- data/lunzer-imdh/dlkcat-evaluation.json +0 -0
- data/lunzer-imdh/homology-audit.json +20 -0
- data/lunzer-imdh/selection.json +1069 -0
- data/temporal/global-accepted-components.fasta +0 -0
- data/temporal/global-accepted-mapping.csv +204 -0
- data/temporal/readiness-audit.json +234 -0
- data/temporal/registry-readiness-audit.json +526 -0
- data/uncertainty-calibration-v2/grouped-cv.json +1722 -0
- data/unikp-km-training-blocker-audit.json +295 -0
- data/unikp_audit.json +20 -0
- release/software-implementation-v10-redacted-manifest.json +0 -0
- release/software-implementation-v10-redacted.zip +3 -0
.gitattributes
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* text=auto
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* text=auto
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data/homology_split.parquet filter=lfs diff=lfs merge=lfs -text
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release/software-implementation-v10-redacted.zip filter=lfs diff=lfs merge=lfs -text
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README.md
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---
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license: other
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license_name: mixed-mit-cc0-cc-by-4.0
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task_categories:
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- other
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tags:
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- biology
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- chemistry
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- enzymes
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- enzyme-kinetics
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- kcat
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- homology-split
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- mmseqs2
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- protein-language-model
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- enzyme-engineering
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size_category: 10K<n<100K
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pretty_name: BioCandidateRanker Training Library (frozen splits, audits, and release archive)
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---
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# BioCandidateRanker Training Library
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**中文说明见下方 [中文说明](#中文说明) 一节。**
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This repository is the organized, license-compliant training library of the
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[BioCandidateRanker](https://github.com/liubuing/BioCandidateRanker) project — a host-aware multimodal enzyme
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candidate scoring research system whose first trained task predicts `log10(kcat)` from
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protein sequence, substrate molecular graph, organism/EC/reaction context, and optional
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FBA features.
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It packages everything needed to **reproduce the exact training setup**: the frozen
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homology-cold split assignments, ingestion audit manifests, source identity hashes,
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external evaluation selections, and the official software release archive.
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> **What is deliberately NOT here:** the UniKP/DLKcat measurement rows themselves
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> (protein sequences + substrates + `kcat` values). The upstream compilation has no
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> redistribution grant on record (`license: unknown`, record-level provenance
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> corpus-level only), so the project's fail-closed license governance
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> (`configs/data_license_inventory.json` in the archive) marks it
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> `redistribution: not_verified` and blocks any measurement row from shipping in a
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> public archive. See [Reconstructing the full training corpus](#reconstructing-the-full-training-corpus)
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> to rebuild the corpus from the original public source and verify it bit-for-bit.
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## Contents
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```
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data/
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homology_split.parquet 16,838 rows: source_row, sequence_id, cluster, split
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homology_split.json original frozen split manifest (redacted paths)
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unikp_audit.json ingestion audit of the development corpus (row counts,
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duplicates, conflicts, source SHA256; redacted path)
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unikp-km-training-blocker-audit.json why governed Km training is blocked
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absolute-activity-training-blocker-audit.json
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full-homology-baseline/test_metrics.json frozen baseline holdout metrics
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enzengdb-v1/ EnzEngDB v1 selection, homology-cold audits,
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rank split, zero-shot transfer result, 3-seed summary
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lunzer-imdh/ Lunzer IMDH selection, homology audit, frozen
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BioCandidateRanker and DLKcat evaluations
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temporal/ temporal absolute-kinetics pool readiness audits,
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accepted-component FASTA and exact row mapping
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uncertainty-calibration-v2/grouped-cv.json
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configs/
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unikp_source_manifest.json source identity and adapter statistics
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data_license_inventory.json the full license governance file governing this repo
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temporal_absolute_kinetics_protocol.json
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release/
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software-implementation-v10-redacted.zip official release archive (408 files)
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software-implementation-v10-redacted-manifest.json per-file SHA256 manifest
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RECONSTRUCTION.md step-by-step corpus reconstruction guide
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```
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## The frozen homology-cold split
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The development corpus is split **protein-homology-cold** with MMseqs2 `linclust`
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(30% min identity, 80% coverage, coverage mode 0, seed 42), producing 2,204 clusters.
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Whole clusters are assigned to a partition, so no protein family leaks between
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train and evaluation:
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| split | rows |
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|---|---|
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| train | 13,470 |
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| validation | 1,684 |
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| test | 1,684 |
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The split is keyed by `source_row` (the 0-based row index in the original
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`Kcat_combination_0918_wildtype_mutant.json`), so it can be applied to any
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byte-identical copy of the source file:
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```python
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from datasets import load_dataset
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import json
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split = load_dataset("<repo-id>", data_files="data/homology_split.parquet")["train"]
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# row: {"source_row": 0, "sequence_id": "seq_...", "cluster": "seq_...", "split": "train"}
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```
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**Note:** the split manifest contains cluster/row/split assignments only — no
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sequences and no `kcat` values — which is exactly why it is redistributable while
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the corpus itself is not.
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## Reconstructing the full training corpus
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1. Obtain `Kcat_combination_0918_wildtype_mutant.json` from the original
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[UniKP repository](https://github.com/Luo-SynBioLab/UniKP) (the file is also the
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wildtype+mutant kcat compilation distributed with
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[DLKcat](https://zenodo.org/records/6438262)).
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2. Verify the frozen source identity:
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| field | value |
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|---|---|
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| SHA256 | `13643b0b36374f8d3f64d8b014882cf1b3b58946eeaae2b9dcd59e8b2c2d6719` |
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| size | 12,132,719 bytes |
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| rows | 17,010 |
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The audit on this machine confirmed a byte-identical copy (2026-10-24).
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3. Run the project's audit and training CLI (included in `release/*.zip`) as
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described in `RECONSTRUCTION.md`.
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Full step-by-step instructions: **[RECONSTRUCTION.md](RECONSTRUCTION.md)**.
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## External evaluation data included
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| component | source | license | shipped content |
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|---|---|---|---|
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| EnzEngDB v1 | Zenodo DOI `10.5281/zenodo.17310823` | CC-BY-4.0 | selection manifests, homology-cold audit, rank split, evaluation results (the 30 MB source archive is **not** bundled — fetch it from the DOI) |
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| Lunzer IMDH landscape | Dryad DOI `10.5061/dryad.7nd70` | CC0-1.0 | project-generated selection, homology audit, and frozen evaluations (source `.xls` not bundled) |
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| Temporal absolute-kinetics pool | 18+ CC0 / CC-BY-4.0 deposits | CC0 / CC-BY-4.0 per source | readiness audits, accepted-component FASTA, row mapping (curation pool below its gates — never scored, **not** a benchmark) |
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## Release archive
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`release/software-implementation-v10-redacted.zip` is the official deterministic
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release archive (`software-implementation-v10`): every Git-tracked source file plus
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38 frozen evidence artifacts, built by `scripts/build_release_archive.py` with
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license-ownership verification and absolute-path redaction. Its embedded and sidecar
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manifests carry per-file SHA256 hashes; the archive SHA256 is
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`34e42f5b211bd590b785abe3ff59ac2cfaaca801328ddef68c9b303044b394d8`.
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The archive includes the trained baseline checkpoint
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(`artifacts/full-homology-baseline/best.pt`), which the license inventory explicitly
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permits as a derived artifact (weights are not a redistribution of measurements).
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## License and attribution
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- **This package's own content** (splits, audits, configs, code in the archive):
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MIT, © 2026 BioCandidateRanker authors.
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- **EnzEngDB v1**: CC-BY-4.0 — cite the Zenodo deposit DOI `10.5281/zenodo.17310823`.
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- **Lunzer IMDH landscape**: CC0-1.0 — Dryad DOI `10.5061/dryad.7nd70`.
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- **UniKP/DLKcat corpus**: **not redistributed here.** If you reconstruct it, respect
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the upstream terms and cite the UniKP and DLKcat papers.
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## Citation
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If you use this split or the reconstruction protocol, please cite the upstream
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sources and this dataset:
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```bibtex
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@software{biocandidateranker2026,
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title = {BioCandidateRanker training library: frozen homology-cold splits and audits},
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author = {BioCandidateRanker authors},
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year = {2026},
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note = {software-implementation-v10 release archive}
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}
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```
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## 中文说明
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本仓库是 BioCandidateRanker 项目的**训练库合规整理包**,目标是让任何人都能精确重建训练设置:
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- **包含**:冻结的 MMseqs2 同源冷划分(2,204 个簇,16,838 行 → train 13,470 / validation 1,684 / test 1,684,按原始文件行号索引)、摄入审计 manifest、源文件 SHA256 身份、EnzEngDB(CC-BY-4.0)与 Lunzer IMDH(CC0)的外部评估选择与结果、时间池就绪审计、以及官方 `software-implementation-v10` 全量发布档案(含基线模型权重 `best.pt`)。
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- **不包含**:UniKP/DLKcat 训练语料的测量行本体(序列、底物、kcat 值)。项目许可治理文件 `configs/data_license_inventory.json` 将其标记为 `not_verified` 并明确禁止任何测量行进入公开档案——上游(BRENDA 编译)无逐条记录的再分发授权。请通过 `RECONSTRUCTION.md` 从原始公开来源获取并按 SHA256 校验。
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- 训练语料原始出处:[UniKP (Luo-SynBioLab)](https://github.com/Luo-SynBioLab/UniKP)、[UniKP 论文 (Yu et al., Nat Commun)](https://pmc.ncbi.nlm.nih.gov/articles/PMC10713628)、[DLKcat 补充数据 (Zenodo)](https://zenodo.org/records/6438262)。
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RECONSTRUCTION.md
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# Reconstructing the BioCandidateRanker training corpus
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This guide rebuilds the exact development corpus, frozen split, and baseline
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evaluation from the public upstream source plus the artifacts in this repository.
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It never requires the measurement rows to pass through this dataset repository.
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## 1. Obtain the original corpus
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Download `Kcat_combination_0918_wildtype_mutant.json` from the original
|
| 10 |
+
[UniKP repository](https://github.com/Luo-SynBioLab/UniKP). The same wildtype+mutant
|
| 11 |
+
kcat compilation was distributed with DLKcat
|
| 12 |
+
([Zenodo record 6438262](https://zenodo.org/records/6438262)).
|
| 13 |
+
|
| 14 |
+
## 2. Verify the frozen identity
|
| 15 |
+
|
| 16 |
+
The project's frozen manifests pin the source bytes. Compute:
|
| 17 |
+
|
| 18 |
+
```bash
|
| 19 |
+
sha256sum Kcat_combination_0918_wildtype_mutant.json
|
| 20 |
+
```
|
| 21 |
+
|
| 22 |
+
Expected:
|
| 23 |
+
|
| 24 |
+
```
|
| 25 |
+
13643b0b36374f8d3f64d8b014882cf1b3b58946eeaae2b9dcd59e8b2c2d6719 (12,132,719 bytes, 17,010 rows)
|
| 26 |
+
```
|
| 27 |
+
|
| 28 |
+
If the hash differs, stop: the split assignments in `data/homology_split.parquet`
|
| 29 |
+
are keyed by row index and are only valid for a byte-identical copy. Cross-check
|
| 30 |
+
against `configs/unikp_source_manifest.json` and `data/unikp_audit.json` in this
|
| 31 |
+
repository. A verified copy was confirmed on 2026-10-24.
|
| 32 |
+
|
| 33 |
+
## 3. Audit the corpus with the project CLI
|
| 34 |
+
|
| 35 |
+
Unpack `release/software-implementation-v10-redacted.zip`, then:
|
| 36 |
+
|
| 37 |
+
```powershell
|
| 38 |
+
python -m venv .venv
|
| 39 |
+
.\.venv\Scripts\python.exe -m pip install -e ".[dev]"
|
| 40 |
+
$env:PYTHONPATH="src"
|
| 41 |
+
python -m biocandidate.cli audit-data `
|
| 42 |
+
--data "<path>\Kcat_combination_0918_wildtype_mutant.json" `
|
| 43 |
+
--output artifacts\unikp_audit.json
|
| 44 |
+
```
|
| 45 |
+
|
| 46 |
+
Expected adapter statistics (recorded in `configs/unikp_source_manifest.json`):
|
| 47 |
+
|
| 48 |
+
| field | value |
|
| 49 |
+
|---|---|
|
| 50 |
+
| total rows | 17,010 |
|
| 51 |
+
| accepted | 16,838 |
|
| 52 |
+
| duplicates | 395 |
|
| 53 |
+
| conflicting duplicates | 215 |
|
| 54 |
+
| rejected | 172 |
|
| 55 |
+
|
| 56 |
+
## 4. Apply the frozen homology-cold split
|
| 57 |
+
|
| 58 |
+
The split in `data/homology_split.parquet` / `data/homology_split.json` maps each
|
| 59 |
+
0-based `source_row` to an MMseqs2 cluster and a partition (MMseqs2 `linclust`,
|
| 60 |
+
min identity 0.3, coverage 0.8, coverage mode 0, seed 42; 2,204 clusters;
|
| 61 |
+
13,470 / 1,684 / 1,684 rows). Join it to the source file by row index:
|
| 62 |
+
|
| 63 |
+
```python
|
| 64 |
+
import json
|
| 65 |
+
import pandas as pd
|
| 66 |
+
|
| 67 |
+
source = json.load(open("Kcat_combination_0918_wildtype_mutant.json", encoding="utf-8"))
|
| 68 |
+
split = pd.read_parquet("data/homology_split.parquet").set_index("source_row")
|
| 69 |
+
train = [source[i] for i in split.index[split["split"] == "train"]]
|
| 70 |
+
```
|
| 71 |
+
|
| 72 |
+
Or let the CLI bind the identity itself (recommended — it refuses a source that
|
| 73 |
+
does not match the audit manifest):
|
| 74 |
+
|
| 75 |
+
```powershell
|
| 76 |
+
python -m biocandidate.cli train `
|
| 77 |
+
--data "<path>\Kcat_combination_0918_wildtype_mutant.json" `
|
| 78 |
+
--manifest artifacts\unikp_audit.json `
|
| 79 |
+
--split-manifest artifacts\homology-final\homology_split.json `
|
| 80 |
+
--output-dir artifacts\training
|
| 81 |
+
```
|
| 82 |
+
|
| 83 |
+
(`artifacts/homology-final/homology_split.json` is included byte-identical inside
|
| 84 |
+
the release archive; the copy under `data/` here is the same file with its one
|
| 85 |
+
embedded local path redacted.)
|
| 86 |
+
|
| 87 |
+
## 5. Reproduce the frozen baseline evaluation
|
| 88 |
+
|
| 89 |
+
The baseline checkpoint `artifacts/full-homology-baseline/best.pt` ships inside
|
| 90 |
+
the release archive. Evaluate the test partition:
|
| 91 |
+
|
| 92 |
+
```powershell
|
| 93 |
+
python -m biocandidate.cli evaluate `
|
| 94 |
+
--checkpoint artifacts\full-homology-baseline\best.pt `
|
| 95 |
+
--data "<path>\Kcat_combination_0918_wildtype_mutant.json" `
|
| 96 |
+
--manifest artifacts\unikp_audit.json `
|
| 97 |
+
--split-manifest artifacts\homology-final\homology_split.json `
|
| 98 |
+
--partition test `
|
| 99 |
+
--output artifacts\full-homology-baseline\test_metrics.json
|
| 100 |
+
```
|
| 101 |
+
|
| 102 |
+
Reference result: `data/full-homology-baseline/test_metrics.json`.
|
| 103 |
+
|
| 104 |
+
> torch >= 2.6 note: `predict`/`evaluate` checkpoint loading with
|
| 105 |
+
> `weights_only=True` rejects pre-2.6 checkpoints. Install `torch<2.6` for CLI
|
| 106 |
+
> reproduction, or use the workbench server path documented in the README.
|
| 107 |
+
|
| 108 |
+
## 6. License obligations
|
| 109 |
+
|
| 110 |
+
- The corpus rows stay out of public archives: upstream terms are unresolved
|
| 111 |
+
(`configs/data_license_inventory.json`, corpus `unikp-kcat-development-corpus`).
|
| 112 |
+
- If you redistribute anything derived from the corpus, resolve the upstream terms
|
| 113 |
+
first and cite the UniKP and DLKcat papers.
|
| 114 |
+
- EnzEngDB v1 (CC-BY-4.0) and the Lunzer IMDH landscape (CC0) have their own
|
| 115 |
+
attribution requirements documented in the dataset card.
|
configs/data_license_inventory.json
ADDED
|
@@ -0,0 +1,227 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"schema_version": 1,
|
| 3 |
+
"updated_on": "2026-09-24",
|
| 4 |
+
"purpose": "Declare every corpus the project reads, its license basis, whether this project may redistribute it, and where that claim is evidenced. scripts/audit_development_corpus_license.py verifies this file and scripts/build_release_archive.py consults release_paths before shipping.",
|
| 5 |
+
"policy": {
|
| 6 |
+
"license_is_not_redistribution_right": "A permissive license on code does not grant redistribution rights over data compiled from third-party databases.",
|
| 7 |
+
"blocked_until_evidenced": "A corpus marked not_verified must not ship measurement data inside a public release archive.",
|
| 8 |
+
"evidence_required": "Every entry must name at least one repository path that a reader can open to check the claim.",
|
| 9 |
+
"release_paths_are_authoritative": "release_paths maps frozen artifact paths to the corpus they belong to; an unowned path is an audit failure.",
|
| 10 |
+
"allowed_redistribution_states": [
|
| 11 |
+
"permitted_with_attribution",
|
| 12 |
+
"permitted_unconditionally",
|
| 13 |
+
"not_verified",
|
| 14 |
+
"blocked_pending_permission",
|
| 15 |
+
"not_applicable_reference_only"
|
| 16 |
+
]
|
| 17 |
+
},
|
| 18 |
+
"corpora": [
|
| 19 |
+
{
|
| 20 |
+
"id": "unikp-kcat-development-corpus",
|
| 21 |
+
"role": "development_training",
|
| 22 |
+
"description": "UniKP/DLKcat kcat development corpus used for all trained models and the frozen homology-cold split.",
|
| 23 |
+
"identity": {
|
| 24 |
+
"sha256": "13643b0b36374f8d3f64d8b014882cf1b3b58946eeaae2b9dcd59e8b2c2d6719",
|
| 25 |
+
"size_bytes": 12132719,
|
| 26 |
+
"rows": 17010,
|
| 27 |
+
"record_level_citations_available": false
|
| 28 |
+
},
|
| 29 |
+
"license_name": "unknown",
|
| 30 |
+
"license_basis": "Corpus-level provenance only. Underlying measurements derive primarily from BRENDA as compiled by the UniKP project; no record-level citation or redistribution grant is recorded.",
|
| 31 |
+
"redistribution": "not_verified",
|
| 32 |
+
"redistribute_in_release": false,
|
| 33 |
+
"blocking_reason": "Upstream compilation terms are unresolved, so no measurement row from this corpus may ship in a public archive.",
|
| 34 |
+
"release_paths": [],
|
| 35 |
+
"measurement_data_shipped": false,
|
| 36 |
+
"derived_artifacts_in_release": [
|
| 37 |
+
{
|
| 38 |
+
"path": "artifacts/unikp_audit.json",
|
| 39 |
+
"kind": "ingestion audit metadata",
|
| 40 |
+
"contains_measurements": false,
|
| 41 |
+
"note": "Row counts, duplicate counts, and the source file hash only. Carries a local absolute source path that must be redacted before a double-blind deposit.",
|
| 42 |
+
"redaction_required": ["source"]
|
| 43 |
+
},
|
| 44 |
+
{
|
| 45 |
+
"path": "artifacts/unikp-km-training-blocker-audit.json",
|
| 46 |
+
"kind": "blocker audit metadata",
|
| 47 |
+
"contains_measurements": false,
|
| 48 |
+
"note": "Records why governed Km training is blocked; no Km values or sequences."
|
| 49 |
+
},
|
| 50 |
+
{
|
| 51 |
+
"path": "artifacts/homology-final/homology_split.json",
|
| 52 |
+
"kind": "record identifier mapping",
|
| 53 |
+
"contains_measurements": false,
|
| 54 |
+
"note": "Holds cluster id, sequence id, source row, and split assignment only; no sequences and no kcat values."
|
| 55 |
+
},
|
| 56 |
+
{
|
| 57 |
+
"path": "artifacts/full-homology-baseline/best.pt",
|
| 58 |
+
"kind": "trained model weights",
|
| 59 |
+
"contains_measurements": false,
|
| 60 |
+
"note": "Derived from the corpus. Weights are not a redistribution of the measurements, but the derivation is declared so reviewers can judge fit."
|
| 61 |
+
}
|
| 62 |
+
],
|
| 63 |
+
"evidence": [
|
| 64 |
+
"configs/unikp_source_manifest.json",
|
| 65 |
+
"configs/temporal_absolute_kinetics_protocol.json",
|
| 66 |
+
"docs/PCB_BASELINE_AND_ENDPOINT_AUDIT_CN.md"
|
| 67 |
+
],
|
| 68 |
+
"blocks": [
|
| 69 |
+
"public release of the training corpus",
|
| 70 |
+
"manuscript data availability statement asserting open training data"
|
| 71 |
+
]
|
| 72 |
+
},
|
| 73 |
+
{
|
| 74 |
+
"id": "enzengdb-v1",
|
| 75 |
+
"role": "external_evaluation",
|
| 76 |
+
"description": "EnzEngDB v1 engineering-fitness campaigns used for zero-shot ranking evaluation.",
|
| 77 |
+
"identity": {
|
| 78 |
+
"doi": "10.5281/zenodo.17310823",
|
| 79 |
+
"archive_bytes": 30050527,
|
| 80 |
+
"archive_sha256": "8013ad81586db2187162aada0709c1cabc7e7d69f03dd5c199776aaf000dd6ea"
|
| 81 |
+
},
|
| 82 |
+
"license_name": "CC-BY-4.0",
|
| 83 |
+
"license_basis": "Deposit record declares CC BY 4.0.",
|
| 84 |
+
"redistribution": "permitted_with_attribution",
|
| 85 |
+
"redistribute_in_release": false,
|
| 86 |
+
"release_paths": [],
|
| 87 |
+
"note": "Selection and audit artifacts ship; the 30 MB source archive does not, to keep the deposit lean.",
|
| 88 |
+
"evidence": [
|
| 89 |
+
"artifacts/external/enzengdb-v1/audit.json",
|
| 90 |
+
"artifacts/external/enzengdb-v1/selection-homology-cold.json"
|
| 91 |
+
]
|
| 92 |
+
},
|
| 93 |
+
{
|
| 94 |
+
"id": "lunzer-imdh-landscape",
|
| 95 |
+
"role": "external_evaluation",
|
| 96 |
+
"description": "Lunzer ancient adaptive IMDH six-site landscape used for mutation-sensitivity testing.",
|
| 97 |
+
"identity": {
|
| 98 |
+
"doi": "10.5061/dryad.7nd70",
|
| 99 |
+
"genotypes": 512
|
| 100 |
+
},
|
| 101 |
+
"license_name": "CC0-1.0",
|
| 102 |
+
"license_basis": "Dryad deposit declares CC0.",
|
| 103 |
+
"redistribution": "permitted_unconditionally",
|
| 104 |
+
"redistribute_in_release": false,
|
| 105 |
+
"release_paths": [],
|
| 106 |
+
"note": "Source landscape is not bundled; only project-generated evaluation outputs would ship.",
|
| 107 |
+
"evidence": [
|
| 108 |
+
"docs/RESEARCH_PROTOCOL.md",
|
| 109 |
+
"docs/CURRENT_RESULTS.md"
|
| 110 |
+
]
|
| 111 |
+
},
|
| 112 |
+
{
|
| 113 |
+
"id": "temporal-absolute-kinetics-pool",
|
| 114 |
+
"role": "prospective_independent_benchmark",
|
| 115 |
+
"description": "Frozen temporal and homology-cold absolute-kinetics pool. Below its record and family gates, never scored.",
|
| 116 |
+
"identity": {
|
| 117 |
+
"accepted_sources": 18,
|
| 118 |
+
"records_after_family_cap": 192,
|
| 119 |
+
"global_families": 25,
|
| 120 |
+
"unique_substrates": 54
|
| 121 |
+
},
|
| 122 |
+
"license_name": "CC0-1.0 or CC-BY-4.0 per source",
|
| 123 |
+
"license_basis": "The frozen protocol admits only CC0 or CC BY 4.0 measurement tables with explicit deposit coverage. Per-source coverage is asserted by the acquisition registry.",
|
| 124 |
+
"redistribution": "permitted_with_attribution",
|
| 125 |
+
"redistribute_in_release": true,
|
| 126 |
+
"release_paths": [
|
| 127 |
+
"artifacts/external/temporal-absolute-kinetics/",
|
| 128 |
+
"artifacts/external/temporal-global-family-audit/"
|
| 129 |
+
],
|
| 130 |
+
"scientific_caveat": "Pool is below its record and family gates and has never been scored. Its presence in the archive is frozen input evidence, not a released benchmark, and must not be cited as validation.",
|
| 131 |
+
"evidence": [
|
| 132 |
+
"configs/temporal_absolute_kinetics_protocol.json",
|
| 133 |
+
"artifacts/external/temporal-global-family-audit/readiness-audit.json",
|
| 134 |
+
"artifacts/external/temporal-absolute-kinetics/candidate_registry.json"
|
| 135 |
+
]
|
| 136 |
+
},
|
| 137 |
+
{
|
| 138 |
+
"id": "project-generated-outputs",
|
| 139 |
+
"role": "project_generated",
|
| 140 |
+
"description": "Artifacts this project generated itself: smoke splits, calibration cross-validation, and blocker audits.",
|
| 141 |
+
"license_name": "project-generated, released with the code",
|
| 142 |
+
"license_basis": "Produced by this repository; no third-party measurement content.",
|
| 143 |
+
"redistribution": "permitted_unconditionally",
|
| 144 |
+
"redistribute_in_release": true,
|
| 145 |
+
"release_paths": [
|
| 146 |
+
"artifacts/simulated-flux-smoke/",
|
| 147 |
+
"artifacts/uncertainty-calibration-v2/",
|
| 148 |
+
"artifacts/absolute-activity-training-blocker-audit.json"
|
| 149 |
+
],
|
| 150 |
+
"evidence": [
|
| 151 |
+
"configs/software_implementation_release_v6.json"
|
| 152 |
+
]
|
| 153 |
+
},
|
| 154 |
+
{
|
| 155 |
+
"id": "catapro-upstream",
|
| 156 |
+
"role": "modern_comparator",
|
| 157 |
+
"description": "CataPro source, pinned weights, and published kcat table used for the fixed-split internal comparison.",
|
| 158 |
+
"identity": {
|
| 159 |
+
"overlap_with_project_test": "1127/1646 exact sequence and canonical-SMILES pairs"
|
| 160 |
+
},
|
| 161 |
+
"license_name": "MIT (code)",
|
| 162 |
+
"license_basis": "MIT covers the code repository. It does not by itself settle redistribution of the published kcat table or of independently licensed base-model weights.",
|
| 163 |
+
"redistribution": "blocked_pending_permission",
|
| 164 |
+
"redistribute_in_release": false,
|
| 165 |
+
"blocking_reason": "Data and base-model weight terms are separate from the code license and remain unresolved.",
|
| 166 |
+
"release_paths": [
|
| 167 |
+
"artifacts/catapro-mode-b/"
|
| 168 |
+
],
|
| 169 |
+
"evidence": [
|
| 170 |
+
"docs/PCB_BASELINE_AND_ENDPOINT_AUDIT_CN.md",
|
| 171 |
+
"docs/CATAPRO_INTERNAL_COMPARISON_CN.md",
|
| 172 |
+
"configs/catapro_internal_test_freeze.json"
|
| 173 |
+
]
|
| 174 |
+
},
|
| 175 |
+
{
|
| 176 |
+
"id": "catpred-upstream",
|
| 177 |
+
"role": "modern_comparator",
|
| 178 |
+
"description": "CatPred source and weights used for the Mode B reproducibility attempt.",
|
| 179 |
+
"license_name": "MIT (code)",
|
| 180 |
+
"license_basis": "MIT covers the code repository; training-data and weight terms are separate.",
|
| 181 |
+
"redistribution": "blocked_pending_permission",
|
| 182 |
+
"redistribute_in_release": false,
|
| 183 |
+
"blocking_reason": "Data and weight terms unresolved; the protocol iteration is also incomplete.",
|
| 184 |
+
"release_paths": [
|
| 185 |
+
"artifacts/catpred-mode-b/"
|
| 186 |
+
],
|
| 187 |
+
"evidence": [
|
| 188 |
+
"docs/CATPRED_MODE_B_RUNBOOK_CN.md",
|
| 189 |
+
"docs/CATPRED_RECOVERY_CN.md",
|
| 190 |
+
"configs/catpred_mode_b_protocol_v3.json"
|
| 191 |
+
]
|
| 192 |
+
},
|
| 193 |
+
{
|
| 194 |
+
"id": "dlkcat-upstream",
|
| 195 |
+
"role": "legacy_comparator",
|
| 196 |
+
"description": "DLKcat source used as the GPL-3.0-only comparison on the IMDH landscape and as a retrained Mode B baseline.",
|
| 197 |
+
"license_name": "GPL-3.0-only (code)",
|
| 198 |
+
"license_basis": "Code is legally runnable under GPL-3.0-only. Record-level training-source overlap with the project test remains unresolved.",
|
| 199 |
+
"redistribution": "not_applicable_reference_only",
|
| 200 |
+
"redistribute_in_release": false,
|
| 201 |
+
"blocking_reason": "Reference-only comparator: the project ships no DLKcat code, weights, or derived data.",
|
| 202 |
+
"release_paths": [],
|
| 203 |
+
"evidence": [
|
| 204 |
+
"docs/SOTA_BASELINE_COMPARISON_PLAN.md",
|
| 205 |
+
"docs/CURRENT_RESULTS.md"
|
| 206 |
+
]
|
| 207 |
+
},
|
| 208 |
+
{
|
| 209 |
+
"id": "sabio-rk-km",
|
| 210 |
+
"role": "governed_km_candidate",
|
| 211 |
+
"description": "SABIO-RK Km rows considered for governed Km training. Permission request drafted but not sent.",
|
| 212 |
+
"license_name": "not established",
|
| 213 |
+
"license_basis": "Row-level metadata exists, but assay chains and permission for training and artifact use are unresolved.",
|
| 214 |
+
"redistribution": "blocked_pending_permission",
|
| 215 |
+
"redistribute_in_release": false,
|
| 216 |
+
"blocking_reason": "No permission grant on file; the request has not been sent.",
|
| 217 |
+
"release_paths": [
|
| 218 |
+
"artifacts/external/governed-km-sabio-rk/"
|
| 219 |
+
],
|
| 220 |
+
"evidence": [
|
| 221 |
+
"docs/external-requests/SABIO_RK_PERMISSION_REQUEST.md",
|
| 222 |
+
"artifacts/external/governed-km-sabio-rk/blocker.json",
|
| 223 |
+
"configs/external_data_blockers.json"
|
| 224 |
+
]
|
| 225 |
+
}
|
| 226 |
+
]
|
| 227 |
+
}
|
configs/temporal_absolute_kinetics_protocol.json
ADDED
|
@@ -0,0 +1,85 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"protocol_version": 1,
|
| 3 |
+
"frozen_on": "2026-07-20",
|
| 4 |
+
"purpose": "Prospective temporal and homology-cold absolute enzyme kinetics benchmark",
|
| 5 |
+
"development_corpus": {
|
| 6 |
+
"name": "UniKP/DLKcat kcat development corpus",
|
| 7 |
+
"sha256": "13643b0b36374f8d3f64d8b014882cf1b3b58946eeaae2b9dcd59e8b2c2d6719",
|
| 8 |
+
"size_bytes": 12132719,
|
| 9 |
+
"rows": 17010,
|
| 10 |
+
"record_level_citations_available": false
|
| 11 |
+
},
|
| 12 |
+
"temporal_gate": {
|
| 13 |
+
"primary_measurement_article_published_on_or_after": "2023-01-01",
|
| 14 |
+
"deposit_date_alone_is_not_sufficient": true,
|
| 15 |
+
"preprints_require_a_stable_doi_and_explicit_dataset_license": true
|
| 16 |
+
},
|
| 17 |
+
"license_gate": {
|
| 18 |
+
"accepted": [
|
| 19 |
+
"CC0-1.0",
|
| 20 |
+
"CC-BY-4.0"
|
| 21 |
+
],
|
| 22 |
+
"deposit_license_must_cover_the_measurement_table": true,
|
| 23 |
+
"third_party_database_compilations_require_source_level_redistribution_rights": true
|
| 24 |
+
},
|
| 25 |
+
"record_inclusion": {
|
| 26 |
+
"direct_experimental_measurement": true,
|
| 27 |
+
"accepted_endpoints": [
|
| 28 |
+
"kcat_s-1",
|
| 29 |
+
"km_molar",
|
| 30 |
+
"kcat_per_km_M-1_s-1"
|
| 31 |
+
],
|
| 32 |
+
"primary_endpoint": "log10_kcat_s-1",
|
| 33 |
+
"full_protein_sequence_or_unambiguous_accession_and_variant": true,
|
| 34 |
+
"single_defined_substrate_with_structure_identifier": true,
|
| 35 |
+
"required_provenance": [
|
| 36 |
+
"measurement_article_doi",
|
| 37 |
+
"dataset_doi_or_stable_record_url",
|
| 38 |
+
"source_file",
|
| 39 |
+
"source_row_or_table_cell",
|
| 40 |
+
"organism",
|
| 41 |
+
"enzyme_identity",
|
| 42 |
+
"substrate_name",
|
| 43 |
+
"endpoint",
|
| 44 |
+
"value",
|
| 45 |
+
"unit",
|
| 46 |
+
"assay_temperature_if_reported",
|
| 47 |
+
"assay_pH_if_reported"
|
| 48 |
+
],
|
| 49 |
+
"derived_kcat_requires_enzyme_concentration_and_documented_formula": true,
|
| 50 |
+
"model_predictions_pseudolabels_and_relative_activity_are_excluded": true,
|
| 51 |
+
"bulk_environmental_or_community_apparent_kinetics_are_excluded": true
|
| 52 |
+
},
|
| 53 |
+
"leakage_gates": {
|
| 54 |
+
"exact_sequence_substrate_overlap_with_development": 0,
|
| 55 |
+
"mmseqs_min_identity": 0.3,
|
| 56 |
+
"mmseqs_coverage": 0.8,
|
| 57 |
+
"mmseqs_coverage_mode": 0,
|
| 58 |
+
"exclude_all_sequences_with_development_hit": true,
|
| 59 |
+
"publication_overlap": "exclude_when_known; report unavailable when development citations are absent",
|
| 60 |
+
"substrate_exact_and_murcko_scaffold_overlap": "report_and_stratify"
|
| 61 |
+
},
|
| 62 |
+
"diversity_and_size_gate": {
|
| 63 |
+
"minimum_records": 300,
|
| 64 |
+
"minimum_mmseqs_families": 30,
|
| 65 |
+
"minimum_unique_substrates": 50,
|
| 66 |
+
"maximum_records_per_family": 20,
|
| 67 |
+
"minimum_records_per_reported_family_metric": 3
|
| 68 |
+
},
|
| 69 |
+
"freeze_policy": {
|
| 70 |
+
"candidate_metadata_and_homology_may_be_audited_before_freeze": true,
|
| 71 |
+
"model_predictions_are_prohibited_before_final_selection_freeze": true,
|
| 72 |
+
"labels_may_not_drive_record_caps_or_family_selection": true,
|
| 73 |
+
"primary_model_checkpoint_and_metrics_must_be_frozen_before_evaluation": true,
|
| 74 |
+
"one_final_evaluation_only": true,
|
| 75 |
+
"failed_readiness_gate_means_no_model_evaluation": true
|
| 76 |
+
},
|
| 77 |
+
"planned_comparators": [
|
| 78 |
+
"train_mean",
|
| 79 |
+
"morgan_mlp",
|
| 80 |
+
"late_concat",
|
| 81 |
+
"task_query",
|
| 82 |
+
"DLKcat_when_training_overlap_is_reported_as_unavailable"
|
| 83 |
+
],
|
| 84 |
+
"claim_boundary": "Until every readiness gate passes, collected records are a curation pool and not an external benchmark. No model may be selected or tuned from this pool."
|
| 85 |
+
}
|
configs/unikp_source_manifest.json
ADDED
|
@@ -0,0 +1,18 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"adapter": {
|
| 3 |
+
"accepted_rows": 16838,
|
| 4 |
+
"conflicting_duplicate_rows": 215,
|
| 5 |
+
"duplicate_rows": 395,
|
| 6 |
+
"rejected_rows": 172,
|
| 7 |
+
"total_rows": 17010
|
| 8 |
+
},
|
| 9 |
+
"identity": {
|
| 10 |
+
"row_count": 17010,
|
| 11 |
+
"sha256": "13643b0b36374f8d3f64d8b014882cf1b3b58946eeaae2b9dcd59e8b2c2d6719",
|
| 12 |
+
"size_bytes": 12132719
|
| 13 |
+
},
|
| 14 |
+
"license_status": "redistribution_not_verified",
|
| 15 |
+
"source_dataset": "UniKP/DLKcat kcat development corpus",
|
| 16 |
+
"source_path_is_external_and_read_only": true,
|
| 17 |
+
"upstream_record_provenance": "corpus_level_only"
|
| 18 |
+
}
|
data/absolute-activity-training-blocker-audit.json
ADDED
|
@@ -0,0 +1,265 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"schema_version": "1.0.0",
|
| 3 |
+
"audit_date": "2026-07-27",
|
| 4 |
+
"task": "BioCandidateRanker governed absolute activity training from repository-local sources",
|
| 5 |
+
"target_model_field": "log10_activity",
|
| 6 |
+
"status": "blocked",
|
| 7 |
+
"decision": {
|
| 8 |
+
"training_performed": false,
|
| 9 |
+
"adapter_written": false,
|
| 10 |
+
"canonical_unit_defined": false,
|
| 11 |
+
"normalized_dataset_written": false,
|
| 12 |
+
"family_split_written": false,
|
| 13 |
+
"cpu_smoke_performed": false,
|
| 14 |
+
"checkpoint_written": false,
|
| 15 |
+
"predictions_used_as_labels": false,
|
| 16 |
+
"fitness_used_as_labels": false,
|
| 17 |
+
"reason_code": "INSUFFICIENT_COMPATIBLE_DIRECT_ABSOLUTE_ACTIVITY_ROWS_AND_FAMILIES",
|
| 18 |
+
"summary": "No repository-local source provides enough compatible, governed, direct absolute activity measurements for family-aware log10_activity training. Turnover constants remain kcat labels; EnzEngDB fitness remains campaign-relative; Lunzer values have an unresolved absolute unit; RFU/min is instrument-relative; and the only shared physical activity dimension, mass-specific rate, has at most 23 rows in three families before scientific gates and at most 10 coherent rows in one family after the locally documented assay and consistency gates.",
|
| 19 |
+
"claim_boundary": "This is a source and compatibility audit only. No labels were created, no endpoint was relabeled, no split or model was produced, and no model scoring was run."
|
| 20 |
+
},
|
| 21 |
+
"search_scope": {
|
| 22 |
+
"root": "<redacted-local-path>",
|
| 23 |
+
"repository_is_git_worktree": false,
|
| 24 |
+
"included": [
|
| 25 |
+
"source adapters and curation scripts under src/ and scripts/",
|
| 26 |
+
"repository-local tabular, JSON, archive, workbook, sequence, audit, metric, checkpoint, and prediction artifacts",
|
| 27 |
+
"all source directories under artifacts/external/absolute-kinetics-screen",
|
| 28 |
+
"all source directories under artifacts/external/temporal-absolute-kinetics",
|
| 29 |
+
"all EnzEngDB v1 campaign files and audits under artifacts/external/enzengdb-v1",
|
| 30 |
+
"existing UniKP manifests and audits under artifacts/ and configs/"
|
| 31 |
+
],
|
| 32 |
+
"endpoint_terms": [
|
| 33 |
+
"activity",
|
| 34 |
+
"specific activity",
|
| 35 |
+
"Vmax",
|
| 36 |
+
"U mg^-1",
|
| 37 |
+
"umol min^-1 mg^-1",
|
| 38 |
+
"RFU/min",
|
| 39 |
+
"fitness_value",
|
| 40 |
+
"kcat",
|
| 41 |
+
"rate"
|
| 42 |
+
],
|
| 43 |
+
"exclusion_policy": [
|
| 44 |
+
"Do not rename kcat, Km, kcat/Km, fitness, relative activity, inhibition, simulated flux, or predictions as activity.",
|
| 45 |
+
"Require a finite direct experimental value, an explicit physical unit and denominator, exact sequence and defined substrate inputs, row-level provenance, and permission-compatible local evidence.",
|
| 46 |
+
"Require assay semantics to be compatible before pooling values that happen to share dimensions.",
|
| 47 |
+
"Require complete protein families to stay within one train, validation, or test partition."
|
| 48 |
+
]
|
| 49 |
+
},
|
| 50 |
+
"candidate_canonical_dimension": {
|
| 51 |
+
"dimension": "amount of product per time per mass of protein",
|
| 52 |
+
"interconvertible_source_units": [
|
| 53 |
+
"U mg^-1",
|
| 54 |
+
"umol min^-1 mg^-1"
|
| 55 |
+
],
|
| 56 |
+
"possible_canonical_unit_if_unblocked": "log10(umol min^-1 mg^-1)",
|
| 57 |
+
"defined_for_training": false,
|
| 58 |
+
"reason_not_defined": "Dimensional convertibility is not sufficient. After directness, assay-validity, conversion-consistency, provenance, and family gates, the local pool collapses to one family with at most 10 rows. Declaring a model-wide canonical activity unit would falsely imply an adequate governed training endpoint."
|
| 59 |
+
},
|
| 60 |
+
"source_buckets": [
|
| 61 |
+
{
|
| 62 |
+
"source_id": "temporal-global-family-audit",
|
| 63 |
+
"path": "artifacts/external/temporal-global-family-audit/readiness-audit.json",
|
| 64 |
+
"endpoint": "direct steady-state kcat",
|
| 65 |
+
"unit": "s^-1 after source-specific normalization",
|
| 66 |
+
"records": 177,
|
| 67 |
+
"families": 21,
|
| 68 |
+
"substrates": 50,
|
| 69 |
+
"activity_eligible_records": 0,
|
| 70 |
+
"reason": "A molar turnover constant is a governed log10_kcat endpoint, not a mass-specific or condition-specific activity endpoint. Relabeling is prohibited."
|
| 71 |
+
},
|
| 72 |
+
{
|
| 73 |
+
"source_id": "UniKP-kcat-development",
|
| 74 |
+
"path": "artifacts/unikp_audit.json",
|
| 75 |
+
"endpoint": "kcat",
|
| 76 |
+
"total_rows": 17010,
|
| 77 |
+
"adapter_accepted_rows": 16838,
|
| 78 |
+
"activity_eligible_records": 0,
|
| 79 |
+
"reason": "The source and implemented task are log10_kcat. It also lacks row-level accessions and a bundled independent split; no kcat value was relabeled as activity."
|
| 80 |
+
},
|
| 81 |
+
{
|
| 82 |
+
"source_id": "EnzEngDB-v1",
|
| 83 |
+
"path": "artifacts/external/enzengdb-v1/audit.json",
|
| 84 |
+
"endpoint": "fitness_value",
|
| 85 |
+
"total_rows": 462092,
|
| 86 |
+
"adapter_accepted_rows": 245945,
|
| 87 |
+
"campaigns": 160,
|
| 88 |
+
"activity_eligible_records": 0,
|
| 89 |
+
"reason": "Fitness has campaign-specific meaning and units. The existing adapter intentionally leaves log10_activity unset and permits only within-campaign ranking. EnzEngDB was excluded from the activity candidate count."
|
| 90 |
+
},
|
| 91 |
+
{
|
| 92 |
+
"source_id": "Lunzer-Dryad-7nd70",
|
| 93 |
+
"path": "artifacts/external/absolute-kinetics-screen/dryad-4964723/Lunzer Curated Biochemistry.xls",
|
| 94 |
+
"source_identity": {
|
| 95 |
+
"sha256": "7bfd71d78235ade06a9e117b8229ad99b1fe7adceb0a5ed72d708c3e925c2a69",
|
| 96 |
+
"size_bytes": 38761
|
| 97 |
+
},
|
| 98 |
+
"endpoint": "derived ln(Km) + ln(kcat/Km)",
|
| 99 |
+
"records": 1024,
|
| 100 |
+
"families": 1,
|
| 101 |
+
"activity_eligible_records": 0,
|
| 102 |
+
"reason": "The absolute source-unit constant is unresolved and all 512 sequences have development-corpus homology hits. Existing use is ranking within cofactor only."
|
| 103 |
+
},
|
| 104 |
+
{
|
| 105 |
+
"source_id": "mLDHD-S-EPMC10589216",
|
| 106 |
+
"path": "artifacts/external/temporal-absolute-kinetics/biostudies-S-EPMC10589216/exclusions.csv",
|
| 107 |
+
"endpoint": "Michaelis-Menten Vmax reported as mass-specific activity",
|
| 108 |
+
"unit": "umol min^-1 mg^-1",
|
| 109 |
+
"candidate_rows": 9,
|
| 110 |
+
"families": 1,
|
| 111 |
+
"direct_dimensionally_compatible_rows": 9,
|
| 112 |
+
"scientifically_eligible_rows": 0,
|
| 113 |
+
"reason": "Every row uses a PMS-DCIP coupled assay without demonstrated saturation of either fixed electron acceptor. The local provenance audit excludes all nine apparent rates; none may become an activity label merely because Vmax has a compatible unit."
|
| 114 |
+
},
|
| 115 |
+
{
|
| 116 |
+
"source_id": "Pantoea-GDH-S-EPMC12364357",
|
| 117 |
+
"path": "artifacts/external/temporal-absolute-kinetics/biostudies-S-EPMC12364357",
|
| 118 |
+
"endpoint": "Michaelis-Menten Vmax reported as mass-specific activity",
|
| 119 |
+
"unit": "U mg^-1",
|
| 120 |
+
"candidate_rows": 10,
|
| 121 |
+
"families": 1,
|
| 122 |
+
"direct_dimensionally_compatible_rows": 10,
|
| 123 |
+
"rows_passing_local_cosubstrate_saturation_rule": 1,
|
| 124 |
+
"rows_with_development_homology": 10,
|
| 125 |
+
"training_eligible_rows": 0,
|
| 126 |
+
"reason": "Only one row passes the local >=5x fixed-cosubstrate Km rule, and the complete family is excluded by development homology. The ten values are useful provenance evidence but cannot support a family-aware activity split."
|
| 127 |
+
},
|
| 128 |
+
{
|
| 129 |
+
"source_id": "SlDefH-PMC13230308",
|
| 130 |
+
"path": "artifacts/external/temporal-absolute-kinetics/europepmc-PMC13230308/blocker-evidence.json",
|
| 131 |
+
"endpoint": "specific activity or Vmax",
|
| 132 |
+
"unit": "U mg^-1",
|
| 133 |
+
"candidate_rows": 4,
|
| 134 |
+
"families": 1,
|
| 135 |
+
"direct_dimensionally_compatible_rows": 4,
|
| 136 |
+
"training_eligible_rows": 0,
|
| 137 |
+
"reason": "The completed source audit found zero independently reconcilable rows. Each reported specific-activity/kcat pair implies approximately 599 kDa versus the stated 29.5 kDa sequence mass, while the article and complete supplement provide no kinetic enzyme molarity, conversion equation, oligomer measurement, active-site stoichiometry, or active-enzyme fraction. Reported values remain provenance evidence only; the local registry finalizes this source at zero rows."
|
| 138 |
+
},
|
| 139 |
+
{
|
| 140 |
+
"source_id": "Zenodo-4448337",
|
| 141 |
+
"path": "artifacts/external/absolute-kinetics-screen/zenodo-4448337/source.zip",
|
| 142 |
+
"source_identity": {
|
| 143 |
+
"sha256": "8ef6d1a23ba3d5a614c5670fabc28daf8644a4d1d1320f0a0850a54f1088090a",
|
| 144 |
+
"size_bytes": 4637
|
| 145 |
+
},
|
| 146 |
+
"endpoint": "kcat, Km, kcat/Km, and cofactor preference",
|
| 147 |
+
"activity_eligible_records": 0,
|
| 148 |
+
"reason": "The archive contains turnover kinetics and a dimensionless preference series, not a governed absolute activity endpoint."
|
| 149 |
+
},
|
| 150 |
+
{
|
| 151 |
+
"source_id": "Zenodo-20626217-Dataset-S1",
|
| 152 |
+
"path": "artifacts/external/absolute-kinetics-screen/zenodo-20626217/Dataset_S1.xlsx",
|
| 153 |
+
"source_identity": {
|
| 154 |
+
"sha256": "83f559a75277c87c307fadb93393b6090a628055fc4c4e8a96d8e0e6e48d5338",
|
| 155 |
+
"size_bytes": 84504
|
| 156 |
+
},
|
| 157 |
+
"endpoint": "BACE1 inhibition and instrument response rates",
|
| 158 |
+
"units": [
|
| 159 |
+
"percent inhibition",
|
| 160 |
+
"IC50 in uM",
|
| 161 |
+
"Ki in uM",
|
| 162 |
+
"RFU/min"
|
| 163 |
+
],
|
| 164 |
+
"activity_eligible_records": 0,
|
| 165 |
+
"reason": "RFU/min lacks a physical amount calibration and protein-mass denominator; inhibition endpoints describe peptides acting on BACE1 rather than enzyme-candidate catalytic activity."
|
| 166 |
+
},
|
| 167 |
+
{
|
| 168 |
+
"source_id": "model-and-simulation-artifacts",
|
| 169 |
+
"paths": [
|
| 170 |
+
"artifacts/candidate_predictions.json",
|
| 171 |
+
"artifacts/external/absolute-kinetics-screen/dryad-4964723/dlkcat-output.tsv",
|
| 172 |
+
"artifacts/external/absolute-kinetics-screen/dryad-4964723/biocandidate-full-evaluation.json",
|
| 173 |
+
"artifacts/external/enzengdb-v1/zero-shot-kcat-proxy.json",
|
| 174 |
+
"artifacts/simulated-flux-smoke"
|
| 175 |
+
],
|
| 176 |
+
"activity_eligible_records": 0,
|
| 177 |
+
"reason": "Predictions, model metrics, checkpoints, and simulated flux are not direct experimental activity labels."
|
| 178 |
+
}
|
| 179 |
+
],
|
| 180 |
+
"mass_specific_activity_funnel": {
|
| 181 |
+
"dimensionally_compatible_candidate_rows": 23,
|
| 182 |
+
"candidate_sources": 3,
|
| 183 |
+
"candidate_families": 3,
|
| 184 |
+
"excluded_coupled_assay_rows": 9,
|
| 185 |
+
"excluded_internal_conversion_inconsistency_rows": 4,
|
| 186 |
+
"coherent_direct_rows_before_homology_and_saturation_gates": 10,
|
| 187 |
+
"coherent_direct_families_before_homology_and_saturation_gates": 1,
|
| 188 |
+
"rows_passing_existing_saturation_and_homology_gates": 0,
|
| 189 |
+
"families_passing_existing_saturation_and_homology_gates": 0,
|
| 190 |
+
"maximum_rows_if_homology_exclusion_were_ignored": 1,
|
| 191 |
+
"maximum_families_if_homology_exclusion_were_ignored": 1
|
| 192 |
+
},
|
| 193 |
+
"family_split_audit": {
|
| 194 |
+
"required_partitions": [
|
| 195 |
+
"train",
|
| 196 |
+
"validation",
|
| 197 |
+
"test"
|
| 198 |
+
],
|
| 199 |
+
"assignment_unit": "complete protein homology family",
|
| 200 |
+
"label_independent_assignment_required": true,
|
| 201 |
+
"candidate_families_before_scientific_gates": 3,
|
| 202 |
+
"eligible_families_after_scientific_gates": 0,
|
| 203 |
+
"split_feasible": false,
|
| 204 |
+
"reason": "Even the permissive dimensional pool would place only one family in each partition with no within-partition family diversity. After existing scientific gates there are no eligible families, so a leakage-aware split cannot be written."
|
| 205 |
+
},
|
| 206 |
+
"incompatibility_counts": {
|
| 207 |
+
"heterogeneous_fitness_rows_explicitly_excluded": 245945,
|
| 208 |
+
"governed_kcat_rows_not_relabelled": 177,
|
| 209 |
+
"unikp_kcat_adapter_rows_not_relabelled": 16838,
|
| 210 |
+
"unit_ambiguous_lunzer_rows_not_relabelled": 1024,
|
| 211 |
+
"mass_specific_candidate_rows": 23,
|
| 212 |
+
"mass_specific_candidate_families": 3,
|
| 213 |
+
"mass_specific_rows_rejected_by_assay_or_consistency": 13,
|
| 214 |
+
"mass_specific_rows_rejected_by_existing_saturation_or_homology_gates": 10,
|
| 215 |
+
"eligible_activity_rows": 0,
|
| 216 |
+
"eligible_activity_families": 0
|
| 217 |
+
},
|
| 218 |
+
"blocking_findings": [
|
| 219 |
+
{
|
| 220 |
+
"code": "ENDPOINT_SEMANTICS_INCOMPATIBLE",
|
| 221 |
+
"severity": "fatal",
|
| 222 |
+
"detail": "kcat, kcat/Km, fitness, inhibition, instrument response, relative activity, and simulated flux are distinct endpoints and cannot be pooled as log10_activity."
|
| 223 |
+
},
|
| 224 |
+
{
|
| 225 |
+
"code": "MASS_SPECIFIC_POOL_TOO_SMALL",
|
| 226 |
+
"severity": "fatal",
|
| 227 |
+
"detail": "Only 23 dimensionally compatible candidate rows in three families exist before scientific gates; at most 10 coherent rows remain in one family before homology and saturation gates."
|
| 228 |
+
},
|
| 229 |
+
{
|
| 230 |
+
"code": "NO_ELIGIBLE_FAMILY_SPLIT",
|
| 231 |
+
"severity": "fatal",
|
| 232 |
+
"detail": "No family remains eligible after the locally documented assay-validity, conversion-consistency, saturation, and development-homology gates."
|
| 233 |
+
},
|
| 234 |
+
{
|
| 235 |
+
"code": "CANONICAL_UNIT_PREMATURE",
|
| 236 |
+
"severity": "fatal",
|
| 237 |
+
"detail": "Defining log10(umol min^-1 mg^-1) as a training endpoint would imply unsupported comparability across apparent Vmax, coupled assays, fixed-condition specific activity, and inconsistent conversions."
|
| 238 |
+
}
|
| 239 |
+
],
|
| 240 |
+
"conditions_to_unblock": [
|
| 241 |
+
"Acquire direct purified-enzyme activity rows with a single prespecified physical denominator and auditable conversion to it; do not substitute kcat or fitness.",
|
| 242 |
+
"Preserve per-row source file/cell, DOI or stable record, exact construct sequence, defined substrate structure, assay conditions, replicate/error semantics, evidence tier, and license provenance.",
|
| 243 |
+
"Prespecify whether the endpoint is saturating mass-specific Vmax or activity at a fixed substrate protocol; do not pool those assay semantics without a validated normalization model.",
|
| 244 |
+
"Resolve coupled-assay saturation and SlDefH conversion inconsistencies before admission.",
|
| 245 |
+
"Acquire enough independent homology families to populate train, validation, and test with meaningful family diversity, then freeze a label-independent family assignment.",
|
| 246 |
+
"Only after those gates pass, define the canonical unit, implement a strict activity-specific adapter, and run a CPU training smoke."
|
| 247 |
+
],
|
| 248 |
+
"evidence_files": [
|
| 249 |
+
"README.md",
|
| 250 |
+
"src/biocandidate/data/normalized_kinetics.py",
|
| 251 |
+
"src/biocandidate/data/enzengdb.py",
|
| 252 |
+
"src/biocandidate/data/lunzer.py",
|
| 253 |
+
"configs/temporal_absolute_kinetics_protocol.json",
|
| 254 |
+
"artifacts/unikp_audit.json",
|
| 255 |
+
"artifacts/external/enzengdb-v1/audit.json",
|
| 256 |
+
"artifacts/external/absolute-kinetics-screen/dryad-4964723/selection.json",
|
| 257 |
+
"artifacts/external/absolute-kinetics-screen/dryad-4964723/homology-audit.json",
|
| 258 |
+
"artifacts/external/temporal-absolute-kinetics/registry-readiness-audit.json",
|
| 259 |
+
"artifacts/external/temporal-global-family-audit/readiness-audit.json",
|
| 260 |
+
"artifacts/external/temporal-absolute-kinetics/biostudies-S-EPMC10589216/provenance.json",
|
| 261 |
+
"artifacts/external/temporal-absolute-kinetics/biostudies-S-EPMC12364357/provenance.json",
|
| 262 |
+
"artifacts/external/temporal-absolute-kinetics/candidate_registry.json",
|
| 263 |
+
"artifacts/external/temporal-absolute-kinetics/third_round_discovery_registry.json"
|
| 264 |
+
]
|
| 265 |
+
}
|
data/enzengdb-v1/audit-homology-cold.json
ADDED
|
@@ -0,0 +1,113 @@
|
|
|
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|
|
|
|
|
|
|
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|
|
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|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"adapter": {
|
| 3 |
+
"accepted_campaigns": 160,
|
| 4 |
+
"accepted_rows": 245945,
|
| 5 |
+
"rejected_rows": 216147,
|
| 6 |
+
"rejection_reasons": {
|
| 7 |
+
"aa_sequence contains non-canonical residues: #": 99,
|
| 8 |
+
"aa_sequence contains non-canonical residues: #.": 123,
|
| 9 |
+
"aa_sequence contains non-canonical residues: *": 45890,
|
| 10 |
+
"fitness_value is missing or non-numeric": 3447,
|
| 11 |
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"reaction SMILES must contain exactly one >> separator": 20,
|
| 12 |
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"reaction has no concrete carbon-containing reactant": 166568
|
| 13 |
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},
|
| 14 |
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"source_files": 179,
|
| 15 |
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"total_rows": 462092
|
| 16 |
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},
|
| 17 |
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"dataset": "EnzEngDB v1",
|
| 18 |
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"dataset_doi": "10.5281/zenodo.17310823",
|
| 19 |
+
"exact_unikp_overlap": {
|
| 20 |
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"sequence": 0,
|
| 21 |
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"sequence_substrate_pair": 0,
|
| 22 |
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"substrate": 297,
|
| 23 |
+
"unikp_publication_overlap": "unavailable_no_record_level_citations"
|
| 24 |
+
},
|
| 25 |
+
"frozen_selection": {
|
| 26 |
+
"campaign_counts": {
|
| 27 |
+
"DHFR": 2000,
|
| 28 |
+
"ParLQ-a": 492,
|
| 29 |
+
"ParLQ-b": 94,
|
| 30 |
+
"ParLQ-c": 94,
|
| 31 |
+
"ParLQ-d": 94,
|
| 32 |
+
"ParLQ-e": 94,
|
| 33 |
+
"ParLQ-f": 94,
|
| 34 |
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"ParLQ-g": 94,
|
| 35 |
+
"ParLQ-h": 94,
|
| 36 |
+
"ParLQ-i": 94,
|
| 37 |
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"Rma-CB": 162,
|
| 38 |
+
"Rma-CSi": 162,
|
| 39 |
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"exp_0": 32,
|
| 40 |
+
"exp_1": 96,
|
| 41 |
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"exp_11": 46,
|
| 42 |
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"exp_13": 31,
|
| 43 |
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"exp_17": 26,
|
| 44 |
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"exp_19": 35,
|
| 45 |
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"exp_20": 41,
|
| 46 |
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"exp_201": 313,
|
| 47 |
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"exp_202": 316,
|
| 48 |
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"exp_25": 50,
|
| 49 |
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"exp_26": 20,
|
| 50 |
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"exp_3": 20,
|
| 51 |
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"exp_31": 180,
|
| 52 |
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"exp_33": 38,
|
| 53 |
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"exp_34": 21,
|
| 54 |
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"exp_35": 84,
|
| 55 |
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"exp_36": 397,
|
| 56 |
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"exp_37": 397,
|
| 57 |
+
"exp_6": 31,
|
| 58 |
+
"exp_8": 34,
|
| 59 |
+
"exp_LLM101": 29,
|
| 60 |
+
"exp_LLM12": 28,
|
| 61 |
+
"exp_LLM15": 40,
|
| 62 |
+
"exp_LLM16": 24,
|
| 63 |
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"exp_LLM21": 30,
|
| 64 |
+
"exp_LLM23": 29,
|
| 65 |
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"exp_LLM26": 30,
|
| 66 |
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"exp_LLM27": 33,
|
| 67 |
+
"exp_LLM39": 29,
|
| 68 |
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"exp_LLM43": 21,
|
| 69 |
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"exp_LLM44": 30,
|
| 70 |
+
"exp_LLM55": 34,
|
| 71 |
+
"exp_LLM6": 57,
|
| 72 |
+
"exp_LLM62": 62,
|
| 73 |
+
"exp_LLM84": 21,
|
| 74 |
+
"exp_LLM87": 56,
|
| 75 |
+
"exp_LLM9": 53,
|
| 76 |
+
"exp_LLM93": 21,
|
| 77 |
+
"exp_LLM97": 20
|
| 78 |
+
},
|
| 79 |
+
"campaigns": 51,
|
| 80 |
+
"manifest": "<redacted-local-path>",
|
| 81 |
+
"records": 6423
|
| 82 |
+
},
|
| 83 |
+
"homology_unikp_overlap": {
|
| 84 |
+
"coverage": 0.8,
|
| 85 |
+
"coverage_mode": 0,
|
| 86 |
+
"hits_identity": {
|
| 87 |
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"row_count": 20426,
|
| 88 |
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"sha256": "388d060ad3293e6ad64de9a81a1960b37ddd12757678bf23b0528378b10d4fa6",
|
| 89 |
+
"size_bytes": 1838499
|
| 90 |
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},
|
| 91 |
+
"hits_path": "<redacted-local-path>",
|
| 92 |
+
"method": "MMseqs2 easy-search",
|
| 93 |
+
"min_identity": 0.3,
|
| 94 |
+
"retained_homology_cold_campaigns": 51,
|
| 95 |
+
"retained_homology_cold_records": 6423,
|
| 96 |
+
"selected_records_with_hit": 22823,
|
| 97 |
+
"unique_external_sequences": 24205,
|
| 98 |
+
"unique_sequences_with_hit": 20426
|
| 99 |
+
},
|
| 100 |
+
"license": "CC-BY-4.0",
|
| 101 |
+
"limitations": [
|
| 102 |
+
"fitness_value has campaign-specific units and is valid only for within-campaign ranking.",
|
| 103 |
+
"Largest concrete carbon-containing reactant is selected deterministically.",
|
| 104 |
+
"Publication overlap cannot be audited because UniKP lacks row-level citations.",
|
| 105 |
+
"MMseqs2 hits were removed from the frozen selection."
|
| 106 |
+
],
|
| 107 |
+
"source_archive": "<redacted-local-path>",
|
| 108 |
+
"source_archive_identity": {
|
| 109 |
+
"row_count": 462092,
|
| 110 |
+
"sha256": "8013ad81586db2187162aada0709c1cabc7e7d69f03dd5c199776aaf000dd6ea",
|
| 111 |
+
"size_bytes": 30050527
|
| 112 |
+
}
|
| 113 |
+
}
|
data/enzengdb-v1/audit.json
ADDED
|
@@ -0,0 +1,147 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
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|
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|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"adapter": {
|
| 3 |
+
"accepted_campaigns": 160,
|
| 4 |
+
"accepted_rows": 245945,
|
| 5 |
+
"rejected_rows": 216147,
|
| 6 |
+
"rejection_reasons": {
|
| 7 |
+
"aa_sequence contains non-canonical residues: #": 99,
|
| 8 |
+
"aa_sequence contains non-canonical residues: #.": 123,
|
| 9 |
+
"aa_sequence contains non-canonical residues: *": 45890,
|
| 10 |
+
"fitness_value is missing or non-numeric": 3447,
|
| 11 |
+
"reaction SMILES must contain exactly one >> separator": 20,
|
| 12 |
+
"reaction has no concrete carbon-containing reactant": 166568
|
| 13 |
+
},
|
| 14 |
+
"source_files": 179,
|
| 15 |
+
"total_rows": 462092
|
| 16 |
+
},
|
| 17 |
+
"dataset": "EnzEngDB v1",
|
| 18 |
+
"dataset_doi": "10.5281/zenodo.17310823",
|
| 19 |
+
"exact_unikp_overlap": {
|
| 20 |
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"sequence": 2,
|
| 21 |
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"sequence_substrate_pair": 0,
|
| 22 |
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"substrate": 20333,
|
| 23 |
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"unikp_publication_overlap": "unavailable_no_record_level_citations"
|
| 24 |
+
},
|
| 25 |
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"frozen_selection": {
|
| 26 |
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"campaign_counts": {
|
| 27 |
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"DHFR": 2000,
|
| 28 |
+
"ParLQ-a": 492,
|
| 29 |
+
"ParLQ-b": 94,
|
| 30 |
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"ParLQ-c": 94,
|
| 31 |
+
"ParLQ-d": 94,
|
| 32 |
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"ParLQ-e": 94,
|
| 33 |
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"ParLQ-f": 94,
|
| 34 |
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"ParLQ-g": 94,
|
| 35 |
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"ParLQ-h": 94,
|
| 36 |
+
"ParLQ-i": 94,
|
| 37 |
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"PfTrpB_4-bromo": 241,
|
| 38 |
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"PfTrpB_4-cyano": 241,
|
| 39 |
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"PfTrpB_5-bromo": 241,
|
| 40 |
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"PfTrpB_5-chloro": 241,
|
| 41 |
+
"PfTrpB_5-cyano": 241,
|
| 42 |
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"PfTrpB_5-iodo": 241,
|
| 43 |
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"PfTrpB_6-chloro": 241,
|
| 44 |
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"PfTrpB_7-bromo": 68,
|
| 45 |
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"PfTrpB_7-iodo": 241,
|
| 46 |
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"PfTrpB_7-methyl": 241,
|
| 47 |
+
"Rma-CB": 162,
|
| 48 |
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"Rma-CSi": 162,
|
| 49 |
+
"TrpB_3A": 2000,
|
| 50 |
+
"TrpB_3B": 2000,
|
| 51 |
+
"TrpB_3C": 2000,
|
| 52 |
+
"TrpB_3D": 2000,
|
| 53 |
+
"TrpB_3E": 2000,
|
| 54 |
+
"TrpB_3F": 2000,
|
| 55 |
+
"TrpB_3G": 2000,
|
| 56 |
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"TrpB_3H": 2000,
|
| 57 |
+
"TrpB_3I": 2000,
|
| 58 |
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"TrpB_B4": 2000,
|
| 59 |
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"exp_0": 32,
|
| 60 |
+
"exp_1": 96,
|
| 61 |
+
"exp_11": 79,
|
| 62 |
+
"exp_12": 54,
|
| 63 |
+
"exp_13": 31,
|
| 64 |
+
"exp_15": 28,
|
| 65 |
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"exp_16": 56,
|
| 66 |
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"exp_17": 29,
|
| 67 |
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"exp_19": 35,
|
| 68 |
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"exp_20": 41,
|
| 69 |
+
"exp_201": 313,
|
| 70 |
+
"exp_202": 316,
|
| 71 |
+
"exp_25": 50,
|
| 72 |
+
"exp_26": 20,
|
| 73 |
+
"exp_27": 37,
|
| 74 |
+
"exp_28": 27,
|
| 75 |
+
"exp_29": 27,
|
| 76 |
+
"exp_3": 20,
|
| 77 |
+
"exp_30": 26,
|
| 78 |
+
"exp_31": 180,
|
| 79 |
+
"exp_33": 38,
|
| 80 |
+
"exp_34": 21,
|
| 81 |
+
"exp_35": 84,
|
| 82 |
+
"exp_36": 397,
|
| 83 |
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"exp_37": 397,
|
| 84 |
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"exp_4": 28,
|
| 85 |
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"exp_6": 31,
|
| 86 |
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"exp_8": 37,
|
| 87 |
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"exp_9": 22,
|
| 88 |
+
"exp_LLM101": 29,
|
| 89 |
+
"exp_LLM12": 28,
|
| 90 |
+
"exp_LLM15": 40,
|
| 91 |
+
"exp_LLM16": 24,
|
| 92 |
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"exp_LLM21": 30,
|
| 93 |
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"exp_LLM23": 29,
|
| 94 |
+
"exp_LLM26": 30,
|
| 95 |
+
"exp_LLM27": 33,
|
| 96 |
+
"exp_LLM3": 53,
|
| 97 |
+
"exp_LLM39": 29,
|
| 98 |
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"exp_LLM42": 21,
|
| 99 |
+
"exp_LLM43": 21,
|
| 100 |
+
"exp_LLM44": 30,
|
| 101 |
+
"exp_LLM47": 31,
|
| 102 |
+
"exp_LLM55": 34,
|
| 103 |
+
"exp_LLM6": 57,
|
| 104 |
+
"exp_LLM62": 62,
|
| 105 |
+
"exp_LLM83": 29,
|
| 106 |
+
"exp_LLM84": 21,
|
| 107 |
+
"exp_LLM87": 56,
|
| 108 |
+
"exp_LLM89": 22,
|
| 109 |
+
"exp_LLM9": 53,
|
| 110 |
+
"exp_LLM91": 29,
|
| 111 |
+
"exp_LLM93": 21,
|
| 112 |
+
"exp_LLM97": 20,
|
| 113 |
+
"exp_LLM98": 59
|
| 114 |
+
},
|
| 115 |
+
"campaigns": 87,
|
| 116 |
+
"manifest": "<redacted-local-path>",
|
| 117 |
+
"records": 29248
|
| 118 |
+
},
|
| 119 |
+
"homology_unikp_overlap": {
|
| 120 |
+
"coverage": 0.8,
|
| 121 |
+
"coverage_mode": 0,
|
| 122 |
+
"hits_identity": {
|
| 123 |
+
"row_count": 20426,
|
| 124 |
+
"sha256": "02f29427fc99c41b5e80f4c7d5f8dcc16a613cdb8b0c6e0a721438fbf451ed6a",
|
| 125 |
+
"size_bytes": 1838499
|
| 126 |
+
},
|
| 127 |
+
"hits_path": "<redacted-local-path>",
|
| 128 |
+
"method": "MMseqs2 easy-search",
|
| 129 |
+
"min_identity": 0.3,
|
| 130 |
+
"selected_records_with_hit": 22823,
|
| 131 |
+
"unique_external_sequences": 24205,
|
| 132 |
+
"unique_sequences_with_hit": 20426
|
| 133 |
+
},
|
| 134 |
+
"license": "CC-BY-4.0",
|
| 135 |
+
"limitations": [
|
| 136 |
+
"fitness_value has campaign-specific units and is valid only for within-campaign ranking.",
|
| 137 |
+
"Largest concrete carbon-containing reactant is selected deterministically.",
|
| 138 |
+
"Publication overlap cannot be audited because UniKP lacks row-level citations.",
|
| 139 |
+
"Homology hits are reported, not silently removed from this transfer benchmark."
|
| 140 |
+
],
|
| 141 |
+
"source_archive": "<redacted-local-path>",
|
| 142 |
+
"source_archive_identity": {
|
| 143 |
+
"row_count": 462092,
|
| 144 |
+
"sha256": "8013ad81586db2187162aada0709c1cabc7e7d69f03dd5c199776aaf000dd6ea",
|
| 145 |
+
"size_bytes": 30050527
|
| 146 |
+
}
|
| 147 |
+
}
|
data/enzengdb-v1/rank-split/campaign_representatives.fasta
ADDED
|
@@ -0,0 +1,274 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
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|
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|
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|
|
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|
| 1 |
+
>seq_0128cb6f247fc8b5a1757767
|
| 2 |
+
VLSEGEWQLVLHVWAKVEADVAGHGQEVLIRLFKGHPETLEKFDKFKHLKSEDEMKASEDLKKGGATALTALGGILKKKGHHEAEIKPLAQSHATKHKIPIKYLEFISEAIIHVLHSRHPGDFGADAQGAMNKALELFRKDIAAKYKELGYQG
|
| 3 |
+
>seq_0132e19a653d30ad50bb0c6f
|
| 4 |
+
MTIKEMPQPKTFGELKNLPLLNTDKPVQALMKIADELGEIFKFEAPGRVTRYLSSQRLIKEACDESRFDKNLWAGEKCLRDFLGDGLATSWTHEKNWKKAHNILLPSFSQQAMKGYHAVMVDIAVQLVQKWERLNADEHIEVSEDMTRLTLDTIGLCGFNYRFNSFYRDQPHPFIISLVRALDEVMNKLQRANPDDPAYDENKRQFQEDIKVMNDLVDKIIADRKARGEQSDDLLTQMLNGKDPETGEPLDDGNIRYQIITFLYAGVEGTSGLLSFALYFLVKNPHVLQKVAEEAARVLVDPVPSYKQVKQLKYVGMVLNEALRLWPIVPQFSLYAKEDTVLGGEYPLEKGDEVMVLIPQLHRDKTVWGDDVEEFRPERFENPSAIPQHAFKPFGNGQRASIGQQFALHEATLVLGMMLKHFDFEDHTNYELDIKERLTLKPKGFVVKAKSKKIPLGGIPSPSTEQSAKKVRKKAENAHNTPLLVLYGSNMGTAEGTARDLADIAMSKGFAPQVATLDSHAGNLPREGAVLIVTASYNGHPPDNAKQFVDWLDQASADEVKGVRYSVFGCGDKNWATTYQKVPAFIDETLAAKGAENIADRGEADASDDFEGTYEEWREHMWSDVAAYFNLDIENSEDNKSTLSLQFVDSAADMPLAKMHGAFSTNVVASKELQQPGSARSTRHLEIELPKEASYQEGDHLGVIPRNYEGIVNRVTARFGLDASQQIRLEAEEEKLAHLPLAKTVSVEELLQYVELQDPVTRTQLRAMAAKTVCPPHKVELEALLEKQAYKEQVLAKRLTMLELLEKYPACEMKFSEFIALLPSIRPRYYSISSSPRVDEKQASITVSVVSGEAWSGYGEYKGIASNYLAELQEGDTITCFISTPQSEFTLPKDPETPLIMVGPGTGVAPFRGFVQARKQLKEQGQSLGEAHLYFGCRSPHEDYLYQEELENAQSEGIITLHTAFSRMPNQPKTYVQHVMEQDGKKLIELLDQGAHFYICGDGSQMAPAVEATLMKSYADVHQVSEADARLWLQQLEEKGRYAKDVWAG
|
| 5 |
+
>seq_0289c3fa8a75bc6d931afd06
|
| 6 |
+
MTIKEMPQPKTFGELKNLPLLNTDKPVQALMKIADELGEIFKFEAPGRVTRYLSSQRLIKEACDESRFDKNLSQALKFARDFLGDGLATSWTHEKNWKKAHNILLPSFSQQAMKGYHAMMVDIAVQLVQKWERLNADEHIEVSEDMTRLTLDTIGLCGFNYRFNSFYRDQPHPFIISMVRALDEVMNKLQRANPDDPAYDENKRQFQEDIKVMNDLVDKIIADRKARGEQSDDLLTQMLNGKDPETGEPLDDGNIRYQIITFLFAGHEGTSGLLSFALYFLVKNPHVLQKVAEEAARVLVDPVPSYKQVKQLKYVGMVLNEALRLWPTVPAFSLYAKEDTVLGGEYPLEKGDEVMVLIPQLHRDKTVWGDDVEEFRPERFENPSAIPQHAFKPFGNGQRASIGQQFALHEATLVLGMMLKHFDFEDHTNYELDIKETLSLKPKGFVVKAKSKKIPLGGIPSPSTLEHHHHHH
|
| 7 |
+
>seq_02f1c523958cf820d9d508c8
|
| 8 |
+
VLSEGEWQLVLHVWAKVEADVAGHGQDILIRLFKSHPETLEKFDRFKHLKTEAEMKASEDLKKVGVTALTALGAILKKKGHHEAELKPLAQSHATKHKIPIKYLEFISEAIIHVLHSRHPGDFGADAQGAMNKALELFRKDIAAKYKELGY
|
| 9 |
+
>seq_040f50f491b9e9274d929440
|
| 10 |
+
VLSEGEWQLVLHVWAKVEADVAGHGQDILIRLFKSHPETLEKFDRFKHLKTEAEMKASEDLKKGGVTALTALGAILKKKGHHEAELKPLAQSHATKHKIPIKYLEFISEAIIHVLHSRHPGDFGADAQGAMNKALELFRKDIAAKYKELGY
|
| 11 |
+
>seq_05103f4e4c76aabbb52070f2
|
| 12 |
+
MISLIAALAVDRVIGMENAMPWNLPAAAAWFKRNTLNKPVIMGRHTWESIGRPLPGRKNIILSSQPGTDDRVT
|
| 13 |
+
>seq_054abda09b68fc21611daeae
|
| 14 |
+
MTDRLKGKVAIVTGGTLGIGLAIADKFVEEGAKVVITGRHADVGEKAAKSIGGTDVIRFVQHDASDEAGWTKLFDTTEEAFGPVTTVVNNAGIAVSKSVEDTTTEEWRKLLSVNLDGVFFGTRLGIQRMKNKGLGASIINMSSIEGFVGDPTLGAYNASKGAVRIMSKSAALDCALKDYDVRVNTVHPGCIKTPLVDDLEGAEEMMSQRTKTPMGHIGEPNDIAWICVYLASDESKFATGAEFVVDGGYTAQHHHHHH
|
| 15 |
+
>seq_078a683b8fe316d77df8d951
|
| 16 |
+
MWFGEFGGQYVPETLVGPLKELEKAYKRFKDDEEFNRQLNYYLKTWAGRPTPLYYAKRLTEKIGGAKVYLKREDLVHGGAHKTNNAIGQALLAKLMGKTRLIAETGAGQHGVATAMAGALLGMKVDIYMGAEDVERQKMNVFRMKLLGANVIPVNSGSRTVKDAINEALRDWVATFEYTHYLIGSVVGPHPYPTIVRDFQSVIGREAKAQILEAEGQLPDVIVACVGGGSNAMGIFYPFVNDKKVKLVGVEAGGKGLESGKHSASLNAGQVGVSHGMLSYFLQDEEGQIKPSHSIAPGLDYPGVGPEHAYLKKIQRAEYVAVTDEEALKAFHELSRTEGIIPALESAHAVAYAMKLAKEMSRDEIIIVNLSGRGDKDLDIVLKASGNV
|
| 17 |
+
>seq_07cdb15503342d0915d23569
|
| 18 |
+
NEQLAKQKGCMACHDLKAKKVGPAYADVAKKYAGRKDAVDYLAGKIKKGTSGVWGSVPGPERNVTDAEAKQLAQWILSIK
|
| 19 |
+
>seq_09630f65f45e8dbf0281de3d
|
| 20 |
+
MAVPGYDFGKVPDAPISDADFESLKKTVMWGEEDEKYRKMACEALKGQVEDILDLWDGLQGSNQHLIYYFGDKSGRPIPQYLEAIRKRFGLWIIDTLCKPLDRQWLNYMYEIGLRHHRTKKGKTDGVDTVEHIPLRYMIAFIAPIGLTFKPILEKSGHPPEAVERMWAAWVKLVALRVAIWSYPYAKTGEW
|
| 21 |
+
>seq_0bd235aa1e1a12de12e792fc
|
| 22 |
+
VLSEGEWQLVLHVWAKVEADVAGHGQEVLIRLFKGHPETLEKFDKFKHLKSEDEMKASEDLKKVGATVLTALGGILKKKGHHEAEIKPLAQSHATKHKIPIKYLEFISEAIIHVLHSRHPGDFGADAQGAMNKALELFRKDIAAKYKELGYQG
|
| 23 |
+
>seq_0cc052ae15d8639cb9a2aa06
|
| 24 |
+
MTDLKASSLRALKLMDLSTLNGDYTDEKVIALCHQAKTPVGNTAAISIYPRSIPIARKTLKEQGTPEIRIATVTNFPHGNDDIDIALAETRAAIAYGADEVDVVFPYRALMAGNEQVGFDLVKACKEACAAANVLLKVIIESGELKDEALIRKASEISIKAGADFIKTSTGLVAVNATPESARIMMEVIRDMGVEKSVGFKVTGGARTAEDAQKYLAIADELFGADWADARHYRFGASGLLASLLKALGHGDGKSASSYLEHHHHHH
|
| 25 |
+
>seq_0d9da8f1429d42bb372d9620
|
| 26 |
+
MNTMLFSPYTIRGLTLKNRIVMSPMCMYSCDTKDGAVRTWHKIHYPARAVGQVGLIIVEATWVTPQGRISERDLGIWSDDHIAGLRELVGLVKEHGAAIGIALAHAGRKSQVPGEIIAPSAVPFDDSSPTPKEMTKADIEETVQAFQNGARRAKEAGFDVIEIHAAAGFLINEFLSPLSNRRQDEYGGSPENRYRFLGEVIDAVREVWDGPLFVAISASDYHPDGLTAKDYVPYAKRMKEQGVDLVIVSSGAIVPARMNVYPGYQVPFAELIRREADIPTGAVGLITSGWQAEEILQNGRADLVFLGAELLRNPYWPYAAARELGAKISAPVQYERGWRFSAWSHPQFEK
|
| 27 |
+
>seq_1207c07be4dcbbf3400b7362
|
| 28 |
+
MPRYLKGWVEDIVQLSLRRPRVHASRQRPIISLNERILEFNKRNITAIIAYYTRKSPLGLVVERDPIEYAKYMERYAVGLSIKTEEKYFNGSYEMLHNIASSVSIPVLMNDFVVKESQIDDAYNLGADTVLLIVGILTERELESLLEYARSYGMEPLILINDENDLDIALRIGARFIVIFSLDFETGEINKENQRKLISMIPSDVVKVALLDIGERNEIEELRKLGVNAFLISSSLMRNPEKIKELIEGSLEHHHHHH
|
| 29 |
+
>seq_15acb6ff6c04c210118ad8d1
|
| 30 |
+
GFKQDIATIRGDLRTYAQDIFLAFLNKYPDERRYFKNYVGKSDQELKSMAKFGDATEKAFNLMMEVADRATDCVPLASDANTLVQMKQHSSLTTGNFEKLFVALVEYMRASGQSFDSQSWDRFGKNLVSALSSAGMK
|
| 31 |
+
>seq_1c8b667c0208e1d5e17160fa
|
| 32 |
+
MTIKEMPQPKTFGELKNLPLLNTDKPVQALMKIADELGEIFKFEAPGRVTRYLSSQRLIKEACDESRFDKNLTQALKFMRDFLGDGLATSWTHEKNWKKAHNILLPSFSQQAMKGYHAMMVDIAVQLVQKWERLNADEHIEVSEDMTRLTLDTIGLCGFNYRFNSFYRDQPHPFIISYVRALDEVMNKLQRANPDDPAYDENKRQFQEDIKVMNDLVDKIIADRKARGEQSDDLLTQMLNGKDPETGEPLDDGNIRYQIITFLMAGHDPTSGLLSFALYFLVKNPHVLQKVAEEAARVLVDPVPSYKQVKQLKYVGMVLNEALRLWPVVPAFSLYAKEDTVLGGEYPLEKGDEVEVLIPQLHRDKTVWGDDVEEFRPERFENPSAIPQHAFKPFGVGQRGSIGAQFALHEATLVLGMMLKHFDFEDHTNYELDIKETFVLKPKGFVVKAKSKKIPLGGIPSPSTEQSAKKVRKKAENAHNTPLLVLYGSNMGTAEGTARDLADIAMSKGFAPQVATLDSHAGNLPREGAVLIVTASYNGHPPDNAKQFVDWLDQASADEVKGVRYSVFGCGDKNWATTYQKVPAFIDETLAAKGAENIADRGEADASDDFEGTYEEWREHMWSDVAAYFNLDIENSEDNKSTLSLQFVDSAADMPLAKMHGAFSTNVVASKELQQPGSARSTRHLEIELPKEASYQEGDHLGVIPRNYEGIVNRVTARFGLDASQQIRLEAEEEKLAHLPLAKTVSVEELLQYVELQDPVTRTQLRAMAAKTVCPPHKVELEALLEKQAYKEQVLAKRLTMLELLEKYPACEMKFSEFIALLPSIRPRYYSISSSPRVDEKQASITVSVVSGEAWSGYGEYKGIASNYLAELQEGDTITCFISTPQSEFTLPKDPETPLIMVGPGTGVAPFRGFVQARKQLKEQGQSLGEAHLYFGCRSPHEDYLYQEELENAQSEGIITLHTAFSRMPNQPKTYVQHVMEQDGKKLIELLDQGAHFYICGDGSQMAPAVEATLMKSYADVHQVSEADARLWLQQLEEKGRYAKDVWAG
|
| 33 |
+
>seq_1d453fb170a63fb4795dd386
|
| 34 |
+
MESGFTSKDTYLSHFNPRDYLEKFYKFGSRHSAESQILKHLLKNLFKIFCLDGVKGDLLIDIGSGPTIYQLLSACESFKEIVVTDYSDQNLQELEKWLKKEPEAFDWSPVVTYVCDLEGNRVKGPEKEEKLRQAVKQVLKCDVTQSQPLGAVPLPPADCVLSTLCLHAACPDLPTYCRALRNLGSLLKPGGFLVIMDMLKSSYYMIGEQKFSALPLGREAVEAAVKEAGYTIEWFEVISQSYSSTMANNEGLFSLVARKLSRPLLEHHHHHH
|
| 35 |
+
>seq_2510a9cf7e381123f3eb6bac
|
| 36 |
+
VLSEGEWQLVLHVWAKVEADVAGHGQDILIRLFKSHPETLEKFDRFKHLKTEAEMKASEDLKKHGVTVLTALGAILKKKGHHEAELKPLAQSHATKHKIPIKYLEFISEAIIHVLHSRHPGDFGADAQGAMNKALELFRKDIAAKYKELGY
|
| 37 |
+
>seq_274ae1c00f773c58528c6322
|
| 38 |
+
MKGYFGPYGGQYVPEILMGALEELEAAYEGIMKDESFWKEFNDLLRDYAGRPTPLYFARRLSEKYGARVYLKREDLLHTGAHKINNAIGQVLLAKLMGKTRIIAETGAGQHGVATATAAALFGMECVIYMGEEDTIRQKLNVERMKLLGAKVVPVKSGSRTLKDAIDEALRDWITNLQTTYYVFGSVVGPHPYPIIVRNFQKVIGEETKKQIPEKEGRLPDYIVACLIGGSNAAGIFYPFIDSGVKLIGVEAGGEGLETGKHAASLLKGKIGYLHGSKTFVLQDDWGQVQVSHSVSAGLDCSGVGPEHAYWRETGKVLYDAVTDEEALDAFIELSRLEGIIPALESSHALAYLKKINIKGKVVVVNLSGRGDKDLESVLNHPYVRERIRL
|
| 39 |
+
>seq_27ab1af16f4014a9aeee7431
|
| 40 |
+
MKGYFGPYGGQYVPEILMGALEELEAAYEGIMKDESFWKEFNDLLRDYAGRPTPLYFARRLSEKYGARVYLKREDLLHTGAHKINNAIGQVLLAKLMGKTRIIAAAAAGQHGVATATAAALFGMECVIYMGEEDTIRQKLNVERMKLLGAKVVPVKSGSRTLKDAIDEALRDWITNLQTTYYVFGSVVGPHPYPIIVRNFQKVIGEETKKQIPEKEGRLPDYIVACVSGGSNAAGIFYPFIDSGVKLIGVEAGGEGLETGKHAASLLKGKIGYLHGSKTFVLQDDWGQVQVSHSVSAGLDYSGVGPEHAYWRETGKVLYDAVTDEEALDAFIELSRLEGIIPALESSHALAYLKKINIKGKVVVVNLSGRGDKDLESVLNHPYVRERIRL
|
| 41 |
+
>seq_29619dcf34d9c6f1b6248e31
|
| 42 |
+
MENSFKAALKAGRPQIGLWLGLSSSYSAELLAGAGFDWLLIDGEHAPNNVQTVLTQLQAIAPYPSQPVVRPSWNDPVQIKQLLDVGTQTLLVPMVQNADEAREAVRATRYPPAGIRGVGSALARASRWNRIPDYLQKANDQMCVLVQIETREAMKNLPQILDVEGVDGVFIGPADLSADMGYAGNPQHPEVQAAIEQAIVQIRESGKAPGILIANEQLAKRYLELGALFVAVGVDTTLLARAAEALAARFGAQATAVKPGVY
|
| 43 |
+
>seq_2ad06bcfe987eecd5a69f20e
|
| 44 |
+
GAEIPKEMLRAQTNKILLNVLKQGDNYVYGIIKQVKEASNGEMELNEATLYTIFDRLEQDGIISSYWGDESQGGRRKYYRLTEIGHENMRLAFESWSRVDKIIENLEANKKSEAIKSRGGSGGWSHPQFEK
|
| 45 |
+
>seq_2af6cf53ba0c140c72a31def
|
| 46 |
+
MTIKEMPQPKTFGELKNLPLLNTDKPVQALMKIADELGEIFKFEAPGRVTRYLSSQRLIKEACDESRFDKNLSQALKFARDFAGDGLTTSWTFEKNWKKAHNILLPSFSQQAMKGYHAMMVDIAVQLVQKWERLNADEHIEVSEDMTRLTLDTIGLCGFNYRFNSFYRDQPHPFIISMVRAGDEVMNKLQRANPDDPAYDESKRQFQEDIKVMNDQVDKIIADRKARGEQSDDLLTQMLNGKDPETGEPLDDGNIRYQIITFLMAGHEATSGLLSFALYFLLKNPHVLQKVAEEAARVLVDPVPSYKQVKQLKYVGMVLNEALRLWPTAPAFSLYAKEDTVLGGEYPLEKGDEVMVLIPQLHRDKTVWGDDVEEFRPERFENPSAIPQHAFKPFGNGQRASIGQQFALHEATLVLGMMLKHFDFEDHTNYELDIKETLCLKPKGFVVKAKSKKIPLGGIPSPSTEQSAKKVRTKAENAHNTPLLVLYGSNMGTAEGTARDLADIAMSKGFAPQVATLDSHAGNLPREGAVLIVTASYNGHPPDNAKQFVDWLDQASADEVKGVRYSVFGCGDKDWATTYQKVPAFIDETLAAKGAENIADRGEADASDDFEGTYEEWREHMWSDVAAYFNLDIENSEDNKSTLSLQSVDSAADMPLAKMHGAFSTNVVASKELQQ
|
| 47 |
+
>seq_2e06483ac3e527c39359be27
|
| 48 |
+
MRTSKKEMILRTAIDYIGEYSLETLSYDSLAEATGLSKSGLIYHFPSRHALLLGMHELLADDWDKELRDITRDPEDPLERLRAVVVTLAENVSRPELLLLIDAPSHPDFLNAWRTVNHQWIPDTDDLENDAHKRAVYLVQLAADGLFVHDYIHDDVLSKSKRQAMLETILELIPSELAAWSHPQFEKYS
|
| 49 |
+
>seq_3070f6dbe4eee602fb6203f6
|
| 50 |
+
MAVPGYDFGKVPDAPISDADFESLKKTVMWGEEDEKYRKMACEALKGQVEDILDLWYGFQGSNQHLIYYFGDKSGRPIPQYLEAVRKRFGLWIIDTLCKPLDRQWLNYMYEIGLRHHRTKKGKTDGVDTVEHIPLRYMIAFIAPIGLTIKPILEKSGHPPEAVERMWAAWVKLVVLQVAIWSYPYAKTGEW
|
| 51 |
+
>seq_31fc278f98fb907ea2cce7c0
|
| 52 |
+
TIKEMPQPKTFGELKNLPLLNTDKPVQALMKIADELGEIFKFEAPGRVTRYLSSQRLIKEACDESRFDKNLSQALKFVRDFAGDGLFTSWTHEKNWKKAHNILLPSFSQQAMKGYHAMMVDIAVQLVQKWERLNADEHIEVPEDMTRLTLDTIGLCGFNYRFNSFYRDQPHPFITSMVRALDEAMNKLQRANPDDPAYDENKRQFQEDIKVMNDLVDKIIADRKASGEQSDDLLTHMLNGKDPETGEPLDDENIRYQIITFLIAGHETTSGLLSFALYFLVKNPHVLQKAAEEAARVLVDPVPSYKQVKQLKYVGMVLNEALRLWPTAPAFSLYAKEDTVLGGEYPLEKGDELMVLIPQLHRDKTIWGDDVEEFRPERFENPSAIPQHAFKPFGNGQRACIGQQFACHEATLVLGMMLKHFDFEDHTNYELDIKETLTLKPEGFVVKAKSKKIPLGGIPSPSTHHHHHH
|
| 53 |
+
>seq_32827649f0b48d16858251f6
|
| 54 |
+
MSSRKELANAIRALSMDAVQKAKSGHPGAPMGMADIAEVLWRDFLKHNPQNPSWADRDRFVLSNGHGSMLIYSLLHLTGYDLPMEELKNFRQLHSKTPGHPEVGYTAGVETTTGPLGQGIANAVGMAIAEKTLAAQFNRPGHDIVDHYTYAFMGDGCMMEGISHEVCSLAGTLKLGKLIAFYDDNGISIDGHVEGWFTDDTAMRFEAYGWHVIRDIDGHDAASIKRAVEEARAVTDKPSLLMCKTIIGFGSPNKAGTHDSHGAPLGDAEIALTREQLGWKYAPFEIPSEIYAQWDAKEAGQAKESAWNEKFAAYAKAYPQEAAEFTRRMKGEMPSDFDAKAKEFIAKLQANPAKIASRKASQNAIEAFGPLLPEFLGGSADLAPSNLTLWSGSKAINEDAAGNYIHYGVREFGMTAIANGISLHGGFLPYTSTFLMFVEYARNAVRMAALMKQRQVMVYTHDSIGLGEEGPTHQPVEQVASLRVTPNMSTWRPCDQVESAVAWKYGVERQDGPTALILSRQNLAQQERTEEQLANIARGGYVLKDCAGQPELIFIATGSEVELAVAAYEKLTAEGVKARVVSMPSTDAFDKQDAAYRESVLPKAVTARVAVEAGIADYWYKYVGLNGAIVGMTTFGESAPAELLFEEFGFTVDNVVAKAKELLHHHHHH
|
| 55 |
+
>seq_3490e63e4835338054ac746a
|
| 56 |
+
MHHHHHHPTLFDPIDFGPIHAKNRIVMSPLTRGRADKEAVPTPIMAEYYAQRASAGLIITEATGISREGLGWPFAPGIWSDAQVEAWKPIVAGVHAKGGKIVCQLWHMGRMVHSSVTGTQPVSSSATTAPGEVWTYEGKKPFEQARAIDAADISRILNDYENAARNAIRAGFDGVQIHAANGFLIDEFLRNGTNHRTDEYGGVPENRIRFLKEVTERVIAAIGADRTGVRLSPNGDTQGCIDSAPETVFVPAAKLLQDLGVAWLELREPGPNGTFGKTDQPKLSPQIRKVFLRPLVLNQDYTFEAAQTALAEGKADAIAFGRKFISNPDLPERFARGIALQPDDMKTWASQGPEGYTDYPSATSGPNGACTATCCATCCGCAACTTCTGGGCCGAACTGA
|
| 57 |
+
>seq_3fb4b59ad582bbad9c4bc618
|
| 58 |
+
MTPSDIPGYDYGRVEKSPITDLEFDLLKKTVMLGEKDVVYLKKACDVLKDQVDEILDLAGGWVASNEHLIYYFSNPDTGEPIKEYLERVRARFGAWILDTTCRDYNREWLDYQYEVGLRHHRPKRGVTDGVRTVPHIPLRYLIAFIYLNTATIKPFLAKKGGSPEDIEGMYNAWFKSVVLQVAIWSHPYTKENDW
|
| 59 |
+
>seq_4065426b02ba4e8f76b34ffe
|
| 60 |
+
MVLSEGEWQLVLHVWAKVEADVAGHGQDILIRLFKSHPETLEKLDRFKHLKTEAEMKASEDLKKVGVTALTALGAILKKKGHHEAELKPLAQSHATKHKIPIKYLEFVSEAIIHVLHSRHPGNFGADAQGAMNKALELFRKDIAAKYKELGYQG
|
| 61 |
+
>seq_411f76e65e4babac204e1016
|
| 62 |
+
MTIKEMPQPKTFGELKNLPLLNTDKPVQALMKIADELGEIFKFEAPGRVTRYLSSQRLIKEACDESRFDKSLSQALKFLRDFMGDGLATSWTHEKNWKKAHNILLPSFSQQAMKGYHAMMVDIAVQLVQKWERLNADEHIEVSEDMTRLTLDTIGLCGFNYRFNSFYRDQPHPFIISMVRAQDEVMNKLQRANPDDPAYDENKRQFQEDIKVMNDLVDKIIADRKARGEQSDDLLTQMLNGKDPETGEPLDDGNIRYQIITFLYAGHEGTSGLLSFALYFLVKNPHVLQKVAEEAARVLVDPVPSYKQVKQLKYVGMVLNEALRLWPTTPAFSLYAKEDTVLGGEYPLEKGDEVMVLIPQLHRDKTVWGDDVEEFRPERFENPSAIPQHAFKPFGNGQRASLGQQFALHEATLVLGMMLKHFDFEDHTNYELDIKETLQLKPKGFVVKAKSKKIPLGGIPSPSTEQSAKKVRKKAENAHNTPLLVLYGSNMGTAEGTARDLADIAMSKGFAPQVATLDSHAGNLPREGAVLIVTASYNGHPPDNAKQFVDWLDQASADEVKGVRYSVFGCGDKNWATTYQKVPAFIDETLAAKGAENIADRGEADASDDFEGTYEEWREHMWSDVAAYFNLDIENSEDNKSTLSLQFVDSAADMPLAKMHGAFSTNVVASKELQQPGSARSTRHLEIELPKEASYQEGDHLGVIPRNYEGIVNRVTARFGLDASQQIRLEAEEEKLAHLPLAKTVSVEELLQYVELQDPVTRTQLRAMAAKTVCPPHKVELEALLEKQAYKEQVLAKRLTMLELLEKYPACEMKFSEFIALLPSIRPRYYSISSSPRVDEKQASITVSVVSGEAWSGYGEYKGIASNYLAELQEGDTITCFISTPQSEFTLPKDPETPLIMVGPGTGVAPFRGFVQARKQLKEQGQSLGEAHLYFGCRSPHEDYLYQEELENAQSEGIITLHTAFSRMPNQPKTYVQHVMEQDGKKLIELLDQGAHFYICGDGSQMAPAVEATLMKSYADVHQVSEADARLWLQQLEEKGRYAKDVWAG
|
| 63 |
+
>seq_475cac6cd0160c0e830675ce
|
| 64 |
+
MGSTAPLRLPVIDLSMKNLKPGTTSWNSVRTQVREALEEYGCFEAVIDAVSPELQKAVCNKGHELLNLPLETKMLNGNKPEYDGFTSIPNLNEGMGVGRITDLEKVERFTNLMWPEGNKDFCETVYSYGKRMAEVDHILKMMVFESFGMEKHFDSFCESTNYLLHFMRYQQPGKDGRSPALSLHKDKSILTIVNQNDVKGLEFETKDGEWILPTADNHIVLLGDCFMAWSNGRLHSPLHRVTLVANQARLSTSSFSFPKDIIETPAELVDEEHPLLFNPFEITELLAYCFTKEGAKAVCDLKQYKAYTGA
|
| 65 |
+
>seq_4938789dfb906569adcba74b
|
| 66 |
+
METMLFSPYTIRGVTLKNRIVMSPMSMFSCDTEDGKVRNWHKIHYPTRAVGQVGLIILEATAVTAQGRISSRDLGIWSDEHVGGLRELVSLVKEHGAKIGIQLAHAGRKSEVDGEIIAPSSIPFSEKTRTPKEMTKADIEETIQAFQNGARRAKEAGFDIIEIHAAHGYLINEFLSPLSNKRQDEYGGSPENRYRFLGEVIDAVKEVWDGPLFVRISASDYHPEGLTVKDYVPYAKRMKKQGVDLIDVSSGAVVPANISVYPGYQVPFAETIRREAEIATGAVGLITSGWQAEEILRNGRADLVFLARELLRNPYWPYAAAKELGTTIPAPVQYERGWRFLEHHHHHH
|
| 67 |
+
>seq_495d7aa91044c4967423c937
|
| 68 |
+
MWFGEFGGQYVPETLIEPLKELEKAYKRFKDDEEFNRQLNYYLKTWAGRPTPLYYAKRLTEKIGGAKIYLKREDLVHGGAHKTNNAIGQALLAKLMGKTRLIAETGAGQHGVATAMAGALLGMKVDIYMGAEDVERQKMNVFRMKLLGANVIPVNSGSRTLKDAINEALRDWVATFEYTHYLIGSVVGPHPYPTIVRDFQSVIGREAKAQILEAEGQLPDVIVACVGGGSNAMGIFYPFVNDKKVKLVGVEAGGKGLESGKHSASLNAGQVGVFHGMLSYFLQDEEGQIKPTHSIAPGLDYPGVGPEHAYLKKIQRAEYVTVTDEEALKAFHELSRTEGIIPALESAHAVAYAMKLAKEMSRDEIIIVNLSGRGDKDLDIVLKVSGNVLEHHHHHH
|
| 69 |
+
>seq_4bd61ec42e09b68e990fca32
|
| 70 |
+
MAANSTRRPIIAFMSDLGTTDDSVAQCKGLMYSICPDVTVVDVCHSMTPWDVEEGARYIVDLPRFFPEGTVFATTTYPATGTTTRSVAVRIKQAAKGGARGQWAGSGAGFERAEGSYIYIAPNNGLLTTVLEEHGYLEAYEVTSPKVIPEQPEPTFYSREMVAIPSAHLAAGFPLSEVGRPLEDHEIVRFNRPAVEQDGEALVGVVSAIDHPFGNVWTNIHRTDLEKAGIGYGARLRLTLDGVLPFEAPLTPTFADAGEIGNIAIYLNSRGYLSIARNALSLAYPYHLKEGMSARVEAR
|
| 71 |
+
>seq_515743f58dcee53388b402aa
|
| 72 |
+
MTIKEMPQPKTFGELKNLPLLNTDKPVQALMKIADELGEIFKFEAPGRVTRYLSSQRLIKEACDESRFDKELSQGLKFLRDFLGDGLPTSWTHEKNWKKAHNILLPSFSQQAMKGYHASMVDIAVQLVQKWERLNADEHIEVSEDMTRLTLDTIGLCGFNYRLNSFYRDQPHPFIISLVRALDEVMNKLQRANPDDPAYDENKRQFQEDIKVMNDLVDKIIADRKARGEQSDDLLTQMLNGKDPETGEPLDDGNIRYQIITFLYAGVEGTSGLLSFALYFLVKNPHVLQKVAEEAARVLVDPVPSYKQVKQLKYVGMVLNEALRLWPVVNYFALYAKEDTVLGGEYPLEKGDEVMVLIPQLHRDKTVWGDDVEEFRPERFENPSAIPQHAFKPFGNGQRASLGQQFALHEATLVLGMMLKHFDFEDHTNYELDIKELLTLKPKGFVVKAKSKKIPLGGIPSPSTEQSAKKVRKKAENAHNTPLLVLYGSNMGTAEGTARDLADIAMSKGFAPQVATLDSHAGNLPREGAVLIVTASYNGHPPDNAKQFVDWLDQASADEVKGVRYSVFGCGDKNWATTYQKVPAFIDETLAAKGAENIADRGEADASDDFEGTYEEWREHMWSDVAAYFNLDIENSEDNKSTLSLQFVDSAADMPLAKMHGAFSTNVVASKELQQPGSARSTRHLEIELPKEASYQEGDHLGVIPRNYEGIVNRVTARFGLDASQQIRLEAEEEKLAHLPLAKTVSVEELLQYVELQDPVTRTQLRAMAAKTVCPPHKVELEALLEKQAYKEQVLAKRLTMLELLEKYPACEMKFSEFIALLPSIRPRYYSISSSPRVDEKQASITVSVVSGEAWSGYGEYKGIASNYLAELQEGDTITCFISTPQSEFTLPKDPETPLIMVGPGTGVAPFRGFVQARKQLKEQGQSLGEAHLYFGCRSPHEDYLYQEELENAQSEGIITLHTAFSRMPNQPKTYVQHVMEQDGKKLIELLDQGAHFYICGDGSQMAPAVEATLMKSYADVHQVSEADARLWLQQLEEKGRYAKDVWAG
|
| 73 |
+
>seq_528908fa127a17873a6d2a45
|
| 74 |
+
MTIKEMPQPKTFGELKNLPLLNTDKPVQALMKIADELGEIFKFEAPGRVTRYLSSQRLIKEACDESRFDKNLSQGLKFLRDFLGDGLATSWTHEKNWKKAHNILLPSFSQQAMKGYHAMMVDIAVQLVQKWERLNADEHIEVSEDMTRLTLDTIGLCGFNYRFNSFYRDQPHPFIISLVRALDEVMNKLQRANPDDPAYDENKRQFQEDIKVMNDLVDKIIADRKARGEQSDDLLTQMLNGKDPETGEPLDDGNIRYQIITFLYAGHEGTSGLLSFALYFLVKNPHVLQKVAEEAARVLVDPVPSYKQVKQLKYVGMVLNEALRLWPPVPAFSLYAKEDTVLGGEYPLEKGDEVMVLIPQLHRDKTVWGDDVEEFRPERFENPSAIPQHAFKPFGNGQRASIGQQFALHEATLVLGMMLKHFDFEDHTNYELDIKELQTLKPKGFVVKAKSKKIPLGGIPSPSTEQSAKKVRKKAENAHNTPLLVLYGSNMGTAEGTARDLADIAMSKGFAPQVATLDSHAGNLPREGAVLIVTASYNGHPPDNAKQFVDWLDQASADEVKGVRYSVFGCGDKNWATTYQKVPAFIDETLAAKGAENIADRGEADASDDFEGTYEEWREHMWSDVAAYFNLDIENSEDNKSTLSLQFVDSAADMPLAKMHGAFST
|
| 75 |
+
>seq_52e5691cb5516155bc071eee
|
| 76 |
+
MTIKEMPQPKTFGELKNLPLLNTDKPVQALMKIADELGEIFKFEAPGRVTRYLSSQRLIKEACDESRFDKNLSQALKFARDFAGDGLVTSWTHEKNWKKAHNILLPSFSQQAMKGYHAMMVDIAVQLVQKWERLNADEHIEVSEDMTRLTLDTIGLCGFNYRFNSFYRDQPHPFIISMVRALDEVMNKLQRANPDDPAYDENKRQFQEDIKVMNDLVDKIIADRKARGEQSDDLLTQMLNGKDPETGEPLDDGNIRYQIITFLYAGHEATSGLLSFALYFLVKNPHVLQKVAEEAARVLVDPVPSYKQVKQLKYVGMVLNEALRLPTVPAFSLYAKEDTVLGGEYPLEKGDEVMVLIPQLHRDKTVWGDDVEEFRPERFENPSAIPQHAFKPFGNGQRASIGQQFALHEATLVLGMMLKHFDFEDHTNYELDIKETLSLKPKGFVVKAKSKKIPLGGIPSPSTEQSAKKVRKKAENAHNTPLLVLYGSNMGTAEGTARDLADIAMSKGFAPQVATLDSHAGNLPREGAVLIVTASYNGHPPDNAKQFVDWLDQASADEVKGVRYSVFGCGDKNWATTYQKVPAFIDETLAAKGAENIADRGEADASDDFEGTYEEWREHMWSDVAAYFNLDIENSEDNKSTLSLQFVDSAADMPLAKMHGAFSTNVVASKELQQPGSARSTRHLEIELPKEASYQEGDHLGVIPRNYEGIVNRVTARFGLDASQQIRLEAEEEKLAHLPLAKTVSVEELLQYVELQDPVTRTQLRAMAAKTVCPPHKVELEALLEKQAYKEQVLAKRLTMLELLEKYPACEMKFSEFIALLPSIRPRYYSISSSPRVDEKQASITVSVVSGEAWSGYGEYKGIASNYLAELQEGDTITCFISTPQSEFTLPKDPETPLIMVGPGTGVAPFRGFVQARKQLKEQGQSLGEAHLYFGCRSPHEDYLYQEELENAQSEGIITLHTAFSRMPNQPKTYVQHVMEQDGKKLIELLDQGAHFYICGDGSQMAPAVEATLMKSYADVHQVSEADARLWLQQLEEKGRYAKDVWAGL
|
| 77 |
+
>seq_541bde7fb942c730a7a2dee1
|
| 78 |
+
MSFVKDFKPQALGDTNLFKPIKIGNNELLHRAVIPPLTRMRALHPGNIPNRDWAVEYYTQRAQRPGTMIITEGAFISPQAGGYDNAPGVWSEEQMVEWTKIFNAIHEKKSFVWVQLWVLGWAAFPDNLARDGLRYDSASDNVFMDAEQEAKAKKANNPQHSLTKDEIKQYIKEYVQAAKNSIAAGADGVEIHSANGYLLNQFLDPHSNTRTDEYGGSIENRARFTLEVVDALVEAIGHEKVGLRLSPYGVFNSMSGGAETGIVAQYAYVAGELEKRAKAGKRLAFVHLVEPRVTNPFLTEGEGEYEGGSNDFVYSIWKGPVIRAGNFALHPEVVREEVKDKRTLIGYGRFFISNPDLVDRLEKGLPLNKYDRDTFYQMSAHGYIDYPTYEEALKLGWDKK
|
| 79 |
+
>seq_59129bcf78036c2f96817f0a
|
| 80 |
+
MAVPGYDFGKVPDAPISDADFESLKKTVMWGEEDEKYRKMACEALKGQVEDILDLMKGFDGSNQHLIYYFGDKSGRPIPQYLEAVRKRYGLWIIDTLCKPLDRQWLNYMYEIGLRHHRTKKGKTDGVDTVEHIPLRYMIAFIAPIGLTIKPILEKSGHPPEAVERMWAAWVKLVVLQVAIWSYPYAKTGEW
|
| 81 |
+
>seq_5a5b553735be93b8626ca8c2
|
| 82 |
+
MGDILIVWAKDVDEMLKQVEILRRLGAKQIAVESSDWRILQEALKKGGDILIVNGGGMTITFRGDDLEALLKAAIEMIKQALKFGATITLSLDGNDLNINITGVPEQVRKELAKEAERLAKEFGITVTRTGGGDVDEMLKQVEILRRLGAKQIAVESDDWRILQEALKKGGDILIVWAKDVDEMLKQVEILRRLGAKQIAVESSDWRILQEALKKGGDILIVNGGGMTITFRGDDLEALLKAAIEMIKQALKFGATITLSLDGNDLNINITGVPEQVRKELAKEAERLAKEFGITVTRTGGGDVDEMLKQVEILRRLGAKQIAVESDDWRILQEALKKGGSAWSHPQFEK
|
| 83 |
+
>seq_5d9a3881eae9751a10b949ef
|
| 84 |
+
MWFGEFGGQYVPETLVGPLKELEKAYKRFKDDEEFNRQLNYYLKTWAGRPTPLYYAKRLTEKIGGAKVYLKREDLVHGGAHKTNNAIGQALLAKLMGKTRLIAETGAGQHGVATAMAGALLGMKVDIYMGAEDVERQKLNVFRMKLLGANVIPVNSGSRTLKDAGDEALRDWVATFEYTHYLLGSVVGPHPYPTIVRDFQSVIGREAKAQIPEAEGQLPDVIVACVGGGSNAMGIFYPFVNDKKVKLVGVEAGGKGLESGKHSASLNAGQVGVSHGMLSYFLQDEEGQIKPSHSIAPGLDVPGVGPEHAYLKKIQRAEYVAVTDEEALKAFHELSRTEGIIPALESAHAVAYAMKLAKEMSRDEIIIVNLSGRGDKDLDIVLKASGNV
|
| 85 |
+
>seq_5ec0dcb7db812779f103c75a
|
| 86 |
+
MTIKEMPQPKTFGELKNLPLLNTDKPVQALMKIADELGEIFKFEAPGRVTRYLSSQRLIKEACDESRFDKELSQGLKFLRDFLGDGLPTSWTHEKNWKKAHNILLPSFSQQAMKGYHASMVDIAVQLVQKWERLNADEHIEVSEDMTRLTLDTIGLCGFNYRLNSFYRDQPHPFIISLVRALDEVMNKLQRANPDDPAYDENKRQFQEDIKVMNDLVDKIIADRKARGEQSDDLLTQMLNGKDPETGEPLDDGNIRYQIITFLYSGVEGTSGLLSFALYFLVKNPHVLQKVAEEAARVLVDPVPSYKQVKQLKYVGMVLNEALRLWPVVPYFALYAKEDTVLGGEYPLEKGDEVMVLIPQLHRDKTVWGDDVEEFRPERFENPSAIPQHAFKPFGNGQRASLGQQFALHEATLVLGMMLKHFDFEDHTNYELDIKELLTLKPKGFVVKAKSKKIPLGGIPSPSTEQSAKKVRKKAENAHNTPLLVLYGSNMGTAEGTARDLADIAMSKGFAPQVATLDSHAGNLPREGAVLIVTASYNGHPPDNAKQFVDWLDQASADEVKGVRYSVFGCGDKNWATTYQKVPAFIDETLAAKGAENIADRGEADASDDFEGTYEEWREHMWSDVAAYFNLDIENSEDNKSTLSLQFVDSAADMPLAKMHGAFST
|
| 87 |
+
>seq_5ee99c51675147e8d1dda33f
|
| 88 |
+
MQNFEIDYVEMYVENLEVAAFSWVDKYAFAVAGTSRSADHRSIALRQGQVTLVLTEPTSDRHPAAAYLQTHGDGVADIAMATSDVAAAYEAAVRAGAEAVRAPGQHSEAAVTTATIGGFGDVVHTLIQRDGTSAELPPGFTGSMDVTNHGKGDVDLLGIDHFAICLNAGDLGPTVEYYERALGFRQIQDDHIVVGAQAMNVTVVQSASGAVTLGLIEPDRNADPGQIDEFLKDHQGAGVQHIAFNSNDAVRAVKALSERGVEFLKTPGAYYDLLGERITLQTHSLDDLRATNVLADEDHGGQLFHILTASTHPRHTIFFEVIERQGAGTYGGSSVKAAVEAVELERTGQSEFGAARR
|
| 89 |
+
>seq_5ef74c731f37bd7e5af9df71
|
| 90 |
+
MTSSGVYTIAEVEAMTGLSAEVLRQWERRYGFPKPRRTPGGHRLYSAEDVEALKTIKRWLEEGATPKAAIRRYLAQEVRPEDLGTGLLEALLRGDLAGAEALFRRGLRFWGPEGVLEHLLLPVLREVGEAWGRGEIGVAEEHLASTFLRARLQELLDLAGFPPGPPVLVTTPPGERHEIGAMLAAYHLRRKGVPALYLGPDTPLPDLRALARRLGAGAVVLSAVLSEPLRALPDGALKDLAPRVFLGGQGAGPEEARRLGAEYMEDLKGLAEALWLPRGPEKEAI
|
| 91 |
+
>seq_5f8f1dd5153a6478113bcf5a
|
| 92 |
+
MAELPKEMLRAQTNVILLNVLKQGDNYVYGIIKQVKEASNGEMELNEATLYTIFKRLEKDGIISSYWGDESQGGRRKYYRLTEIGHEAMRLGFESWSRVDKIIENLEANKKSEAIKSRWSHPQFEK
|
| 93 |
+
>seq_5ffdfbe09fa078233f5e8d09
|
| 94 |
+
MTIKEMPQPKTFGELKNLPLLNTDKPVQALMKIADELGEIFKFEAPGRVTRYLSSQRLIKEACDESRFDKNLSQGLKFLRDFLGDGLATSWTHEKNWKKAHNILLPSFSQQAMKGYHAMMVDIAVQLVQKWERLNADEHIEVSEDMTRLTLDTIGLCGFNYRFNSFYRDQPHPFIISMVRALDEVMNKLQRANPDDPAYDENKRQFQEDIKVMNDLVDKIIADRKARGEQSDDLLTQMLNGKDPETGEPLDDGNIRYQIITFLYAGHEGTSGLLSFALYFLVKNPHVLQKVAEEAARVLVDPVPSYKQVKQLKYVGMVLNEALRLWPIVPAFSLYAKEDTVLGGEYPLEKGDEVMVLIPQLHRDKTVWGDDVEEFRPERFENPSAIPQHAFKPFGNGQRASIGQQFALHEATLVLGMMLKHFDFEDHTNYELDIKETQSLKPKGFVVKAKSKKIPLGGIPSPSTEQSAKKVRKKAENAHNTPLLVLYGSNMGTAEGTARDLADIAMSKGFAPQVATLDSHAGNLPREGAVLIVTASYNGHPPDNAKQFVDWLDQASADEVKGVRYSVFGCGDKNWATTYQKVPAFIDETLAAKGAENIADRGEADASDDFEGTYEEWREHMWSDVAAYFNLDIENSEDNKSTLSLQFVDSAADMPLAKMHGAFSTNVVASKELQQPGSARSTRHLEIELPKEASYQEGDHLGVIPRNYEGIVNRVTARFGLDASQQIRLEAEEEKLAHLPLAKTVSVEELLQYVELQDPVTRTQLRAMAAKTVCPPHKVELEALLEKQAYKEQVLAKRLTMLELLEKYPACEMKFSEFIALLPSIRPRYYSISSSPRVDEKQASITVSVVSGEAWSGYGEYKGIASNYLAELQEGDTITCFISTPQSEFTLPKDPETPLIMVGPGTGVAPFRGFVQARKQLKEQGQSLGEAHLYFGCRSPHEDYLYQEELENAQSEGIITLHTAFSRMPNQPKTYVQHVMEQDGKKLIELLDQGAHFYICGDGSQMAPAVEATLMKSYADVHQVSEADARLWLQQLEEKGRYAKDVWAGLEHHHHHH
|
| 95 |
+
>seq_6180ebf659dbac99c59c7004
|
| 96 |
+
MAVPGYDFGKVPDAPISDADFESLKKTVMWGEEDEKYRKMACEALKGQVEDILDLMKGFNGSNQHLIYYFGDKSGRPIPQYLEAVRKRYGLWIIDTLCKPLDRQWLNYMYEIGLRHHRTKKGKTDGVDTVEHIPLRYMIAFIAPIGLTIKPILEKSGHPPEAVERMWAAWVKLVVLQVAIWSYPYAKTGEW
|
| 97 |
+
>seq_65a799666ca1421a0826ddc6
|
| 98 |
+
TIKEMPQPKTFGELKNLPLLNTDKPVQALMKIAGELGEIFKFEAPGRVTRYLSSQRLIKEACDESRFDKNLSQALKFARDFVGDGLGTSWTHEKNWKKAHNILLPSFSQQAMKGYHAMMVDTAVQLVQKWERLNADEHIEVSEDMTRLTLDTIGLCGFNYRFNSFYRDQPHPFIISMVRALDEVMNKLQRANPDDPAYDENKRQFQEDIKVMNDLVDKIIADRKARGEQSDDLLTQMLNGKDPETGEPLDDENIRYQIITFLIAGHETTSGLLSFALYFLVKNPHVLQKVAEEAARVLVDPVPSYKQVKQLKYVGMVLNEALRLWPMSPAFSLYAKEDTVLGGEYPLEKGDEVMVLIPQLHRDKTVWGDDVEEFRPERFENPSAIPQHAFKPFGNGQRACIGQQFALHEATLVLGMMLKHFDFEDHTNYELDIKETLTLKPKGF
|
| 99 |
+
>seq_65c1c68265f7c15f84e25082
|
| 100 |
+
MKGYFGPYGGQYVPEILMGALEELEAAYEGIMKDESFWKEFNDLLRDYAGRPTPLYFARRLSEKYGARVYLKREDLLHTGAHKINNAIGQVLLAKLMGKTRIIAETGAGQHGVATATAAALFGMECVIYMGEEDTIRQKLNVERMKLLGAKVVPVKSGSRTLKDAIDEALRDWITNLQTTYYVIGSVVGPHPYPIIVRNFQKVIGEETKKQIPEKEGRLPDYIVACVSGGSNAAGIFYPFIDSGVKLIGVEAGGEGLETGKHAASLLKGKIGYLHGSKTFVLQDDWGQVQVSHSVSAGLDYSGVGPEHAYWRETGKVLYDAVTDEEALDAFIELSRLEGIIPALESSHALAYLKKINIKGKVVVVNLSGRGDKDLESVLNHPYVRERIRLEHHHHHH
|
| 101 |
+
>seq_6af0d81b3535ddbc28b59d25
|
| 102 |
+
MTIKEMPQPKTFGELKNLPLLNTDKPVQALMKIADELGEIFKFEAPGRVTRYLSSQRLIKEACDESRFDKSLSQGLKFLRDFLGDGLATSWTHEKNWKKAHNILLPSFSQQAMKGYHAMMVDIAVQLVQKWERLNADEHIEVSEDMTRLTLDTIGLCGFNYRFNSFYRDQPHPFIISLVRALDEVMNKLQRANPDDPAYDENKRQFQEDIKVMNDLVDKIIADRKARGEQSDDLLTQMLNGKDPETGEPLDDGNIRYQIITFLMAGHEGTSGLLSFALYFLVKNPHVLQKVAEEAARVLVDPVPSYKQVKQLKYVGMVLNEALRLWPPVPAFSLYAKEDTVLGGEYPLEKGDEVMVLIPQLHRDKTVWGDDVEEFRPERFENPSAIPQHAFKPFGNGQRASIGQQFALHEATLVLGMMLKHFDFEDHTNYELDIKELVTLKPKGFVVKAKSKKIPLGGIPSPSTEQSAKKVRKKAENAHNTPLLVLYGSNMGTAEGTARDLADIAMSKGFAPQVATLDSHAGNLPREGAVLIVTASYNGHPPDNAKQFVDWLDQASADEVKGVRYSVFGCGDKNWATTYQKVPAFIDETLAAKGAENIADRGEADASDDFEGTYEEWREHMWSDVAAYFNLDIENSEDNKSTLSLQFVDSAADMPLAKMHGAFST
|
| 103 |
+
>seq_6af272dc038c3ca7bc2327cd
|
| 104 |
+
MWFGEFGGQYVPETLVGPLKELEKAYKRFKDDEEFNRQLNYYLKTWAGRPTPLYYAKRLTEKIGGAKVYLKREDLVHGGAHKTNNAIGQALLAKLMGKTRLIAETGAGQHGVATAMAGALLGMKVDIYMGAEDVERQKLNVFRMKLLGANVIPVNSGSRTLKDAIDEALRDWVATFEYTHYLDGSVVGPHPYPTIVRDFQSVIGREAKAQIPEAEGQLPDVIVACVGGGSNAMGIFYPFVNDKKVKLVGVEAGGKGLESGKHSASLNAGQVGVSHGMLSYFLQDEEGQIKPSHSIAPGLDVPGVGPEHAYLKKIQRAEYVAVTDEEALKAFHELSRTEGIIPALESAHAVAYAMKLAKEMSRDEIIIVNLSGRGDKDLDIVLKASGNV
|
| 105 |
+
>seq_6f604ec77a51741581644613
|
| 106 |
+
MKGYFGPYGGQYVPEILMGALEELEAAYEGIMKDESFWKEFNDLLRDYAGRPTPLYFARRLSEKYGARVYLKREDLLHTGAHKINNAIGQVLLAKLMGKTRIIAETGAGQHGVATATAAALFGMECVIYMGEEDTIRQKLNVERMKLLGAKVVPVKSGSRTLKDAIDEALRDWITNLQTTYLLLGSVVGPHPYPIIVRNFQKVIGEETKKQIPEKEGRLPDYIVACVSGGSNAAGIFYPFIDSGVKLIGVEAGGEGLETGKHAASLLKGKIGYLHGSKTFVLQDDWGQVQVSHSVSAGLDYSGVGPEHAYWRETGKVLYDAVTDEEALDAFIELSRLEGIIPALESSHALAYLKKINIKGKVVVVNLSGRGDKDLESVLNHPYVRERIRL
|
| 107 |
+
>seq_6fea94791e776819b3c1006d
|
| 108 |
+
MWFGEFGGQYVPETLVGPLKELEKAYKRFKDDEEFNRQLNYYLKTWAGRPTPLYYAKRLTEKIGGAKVYLKREDLVHGGAHKTNNAIGQALLAKLMGKTRLIAETGAGQHGVATAMAGALLGMKVDIYMGAEDVERQKMNVFRMKLLGANVIPVNSGSRTLKDAINEALRDWVATFEYTHYLIGSVVGPHPYPTIVRDFQSVIGREAKAQILEAEGQLPDVIVACVGGGSNAMGIFYPFVNDKKVKLVGVEAGGKGLESGKHSASLNAGQVGVSHGMLSYFLQDEEGQIKPSHSIAPGLDYPGVGPEHAYLKKIQRAEYVAVTDEEALKAFHELSRTEGIIPALESAHAVAYAMKLAKEMSRDEIIIVNLSGRGDKDLDIVLKASGNVLEHHHHHH
|
| 109 |
+
>seq_7068ee572ee196e373d3371a
|
| 110 |
+
MVLSEGEWQLVLHVWAKVEADVAGHGQDILIRLFKSHPETLEKFDRFKHLKTEAEMKASEDLKKHGVTVLTALGAILKKKGHHEAELKPLAQSHATKHKIPIKYLEFISEAIIHVLHSRHPGNFGADAQGAMNKALELFRKDIAAKYKELGYQG
|
| 111 |
+
>seq_7112e81bfccad2bce658866c
|
| 112 |
+
MTNLQTFELPTEVTGCAADISLGRALIQAWQKDGIFQIKTDSEQDRKTQEAMAASKQFCKEPLTFKSSCVSDLTYSGYVASGEEVTAGKPDFPEIFTVCKDLSVGDQRVKAGWPCHGPVPWPNNTYQKSMKTFMEELGLAGERLLKLTALGFELPINTFTDLTRDGWHHMVVLRFPPQTSTLSRGIGAHTDYGLLVIAAQDDVGGLYIRPPVEGEKRNRNWLPGESSAGMFEHDEPWTFVTPTPGVWTVFPGDILQFMTGGQLLSTPHKVKLNTRERFACAYFHEPNFEASAYPLFEPSANERIHYGEHFTNMMMRMYPDRITTQRINKENRLAHLEDLKKYSDTRATGS
|
| 113 |
+
>seq_72c72fa0e7d06ffce0abcbf3
|
| 114 |
+
MAEEVSNKQVILKNYVTGYPKESDMEIKNVTIKLKVPEGSNDVVVKNLYLSCDPYMRSRMRKIEGSYVESFAPGSPITGYGVAKVLESGDPKFQKGDLVWGMTGWEEYSIITPTQTLFKIHDKDVPLSYYTGILGMPGMTAYAGFHEVCSPKKGETVFVSAASGAVGQLVGQFAKMLGCYVVGSAGSKEKVDLLKSKFGFDEAFNYKEEQDLSAALKRYFPDGIDIYFENVGGKMLDAVLVNMKLYGRIAVCGMISQYNLEQTEGVHNLFCLITKRIRMEGFLVFDYYHLYPKYLEMVIPQIKAGKVVYVEDVAHGLESAPTALVGLFSGRNIGKQVVMVSRELEHHHHHH
|
| 115 |
+
>seq_74c6d12048036192ff292472
|
| 116 |
+
TIKEMPQPKTFGELKNLPLLNTDKPVQALMKIADELGEIFKFEAPGHVTRYLSSQRLIKEACDESRFDKMLSQQLKSLRDFLGDGLATSWTHEKNWKKAHNILLPSFSQQAMKGYHAMMVDIAVQLVQKWERLNADEHIEVSKDMTRLTLDTIGLCGFNYRFNSFYRDQPHPFIISMVRALDEVMNKLQRANPDDPAYDENKRQFQEDIKVMNDLVDKIIADRKATGEQSDDLLTQMLNGKDPETGEPLDDVNIRYQIITFLLAGHEGTSGLLSFALYFLVKNPHVLQKVAEEAARVLVDPVPSYKQVKQLKYVGMVLNEALRLWPTAPAFSLYAKEDTVLGGEYPLEKGDEVMVLIPQLHRDKTVWGDDVEEFRPERFENPSAIPQHAFKPFGNGQRAALGQQFALHEATLVLGMMLKHFDFEDHTNYELDIKEALTLKPKGFVVKAKSKKIPLGGIPSPSTEQSAKKVRKKAENAHNTPLLVLYGSNMGTAEGTARDLADIAMSKGFAPQVATLDSHAGNLPREGAVLIVTASYNGHPPDNAKQFVDWLDQASADEVKGVRYSVFGCGDKDWATTYQKVPAFIDETLAAKGAENIADRGEADASDDFEGTYEEWREHMWSDVAAYFNLDIENSEDNKSTLSLQFVDSAAD
|
| 117 |
+
>seq_754a0b88eefcb260adcacfb0
|
| 118 |
+
MAMITGGELVVRTLIKAGVEHLFGLHGAHIDTIFQACLDHDVPIIDTRHEAAAGHAAEGYARAGAKLGVALVTAGGGFTNAVTPIANAWLDRTPVLFLTGSGALRDDETNTLQAGIDQVAMAAPITKWAHRVMATEHIPRLVMQAIRAALSAPRGPVLLDLPWDILMNQIDEDSVIIPDLVLSAHGARPDPADLDQALALLRKAERPVIVLGSEASRTARKTALSAFVAATGVPVFADYEGLSMLSGLPDAMRGGLVQNLYSFAKADAAPDLVLMLGARFGLNTGHGSGQLIPHSAQVIQVDPDACELGRLQGIALGIVADVGGTIEALAQATAQDAAWPDRGDWCAKVTDLAQERYASIAAKSSSEHALHPFHASQVIAKHVDAGVTVVADGALTYLWLSEVMSRVKPGGFLCHGYLGSMGVGFGTALGAQVADLEAGRRTILVTGDGSVGYSIGEFDTLVRKQLPLIVIIMNNQSWGATLHFQQLAVGPNRVTGTRLENGSYHGVAAAFGADGYHVDSVESFSAALAQALAHNRPACINVAVALDPIPPEELILIGMDPFGSHHHHHH
|
| 119 |
+
>seq_75ae3a83a97a6b8a31e6a8ed
|
| 120 |
+
MTVPSPLADPSIVPDPYPVYADLAQRRPVHWVERLNAWAVLTYADCAAGLKDPRLTADRGTEVLAAKFPGQPLPPDNIFHRWTKNVVMYTDPPLHDALRRSVRAGFTRAAHQHYDQVLQKVAHDLVASIPAGATEIDAVPALAAELPVRSAVHAFGVPEEDLGFLIPRVNTIMTYFSGPKDQPVTQEIILEKLTDLHTYASELLQGMRGKVLPDTVIARLAAAQDGLTETTPEQTVHQLALVFIALFAPTTPGSLSSGTLAFARNPRQVERFLADQACVDNTANEVLRYNASNQFTWRVAAKDVEMGGVRIEAGQTLALFLGSANRDANMFERPNDFDLDRPNSARHLSFGQGVHACLAAQLISLQLKWFYVALLNRFPGIRTAGEPIWNENLEFRSLRSLPLSLR
|
| 121 |
+
>seq_793b780b2796b06bfbeb2e1b
|
| 122 |
+
MWFGEFGGQYVPETLVGPLKELEKAYKRFKDDEEFNRQLNYYLKTWAGRPTPLYYAKRLTEKIGGAKVYLKREDLVHGGAHKTNNAIGQALLAKLMGKTRLIAGTGAGQHGVATAMAGALLGMKVDIYMGAEDVERQKLNVFRMKLLGANVIPVNSGSRTLKDAIDEALRDWVATFEYTHYLFGSAVGPHPYPTIVRDFQSVIGREAKAQIPEAEGQLPDVIVACVGGGSNAMGIFYPFVNDKKVKLVGVEAGGKGLESGKHSASLNAGQVGVSHGMLSYFLQDEEGQIKPSHSIAPGLDYPGVGPEHAYLKKIQRAEYVAVTDEEALKAFHELSRTEGIIPALESAHAVAYAMKLAKEMSRDEIIIVNLSGRGDKDLDIVLKASGNVLEHHHHHH
|
| 123 |
+
>seq_7ca0142c542e0e9bf5dee595
|
| 124 |
+
MKGYFGPYGGQYVPEILMGALEELEAAYEGIMKDESFWKEFNDLLRDYAGRPTPLYFARRLSEKYGARVYLKREDLLHTGAHKINNAIGQVLLAKLMGKTRIIAETGAGQHGVATATAAALFGMECVIYMGEEDTIRQKLNVERMKLLGAKVVPVKSGSRTLKDAIDEALRDWITNLQTTYYVFGSVVGPHPYPIIVRNFQKVIGEETKKQIPEKEGRLPDYIVACVDGDCNAAGIFYPFIDSGVKLIGVEAGGEGLETGKHAASLLKGKIGYLHGSKTFVLQDDWGQVQVSHSVSAGLDYSGVGPEHAYWRETGKVLYDAVTDEEALDAFIELSRLEGIIPALESSHALAYLKKINIKGKVVVVNLSGRGDKDLESVLNHPYVRERIRL
|
| 125 |
+
>seq_7d0e84a2b0e0469d0dd56de8
|
| 126 |
+
MAPTLSEQTRQLVRASVPALQKHSVAISATMYRLLFERYPETRSLFELPERAIHKLASALLAYARSIDNPSALQAAIRRMVLSHARAGVQAVHYPLVWECLRDAIKEVLGPDATETLLQAWKEAYDFLAHLLSTKEAQVYAVLAE
|
| 127 |
+
>seq_84848298911e2f2fe68f3d30
|
| 128 |
+
AIKEMPQPKTFGELKNLPLLNTDKPVQALMKIADELGEIFKFEAPGRVTRYLSSQRLIKEACDESRFDKNLSQALKFVRDFFGDGLFTSWTHEKNWKKAHNILLPSFSQQAMKGYHAMMVDIAVQLVQKWERLNADEHIEVPEDMTRLTLDTIGLCGFNYRFNSFYRDQPHPFITSMVRALDEAMNKLQRANPDDPAYDENKRQFQEDIKVMNDLVDKIIADRKASGEQSDDLLTHMLNGKDPETGEPLDDENIRYQIITFLIAGHETTSGLLSFALYFLVKNPHVLQKAAEEAARVLVDPVPSYKQVKQLKYVGMVLNEALRLWPTAPAFSLYAKEDTVLGGEYPLEKGDELMVLIPQLHRDKTIWGDDVEEFRPERFENPSAIPQHAFKPFGNGQRACIGQQFALHEATLVLGMMLKHFDFEDHTNYELDIKETLTLKPEGFVVKAKSKKIPLGGIPSPSTEQSAKKVRKKAENAHNTPLLVLYGSNMGTAEGTARDLADIAMSKGFAPQVATLDSHAGNLPREGAVLIVTASYNGHPPDNAKQFVDWLDQASADEVKGVRYSVFGCGDKNWATTYQKVPAFIDETLAAKGAENIADRGEADASDDFEGTYEEWREHMWSDVAAYFNLDIENSEDNKSTLSLQFVDSAADMPLAKMHGAFSTNVVASKELQQPGSARSTRHLEIELPKEASYQEGDHLGVIPRNYEGIVNRVTARFGLDASQQIRLEAEEEKLAHLPLAKTVSVEELLQYVELQDPVTRTQLRAMAAKTVCPPHKVELEALLEKQAYKEQVLAKRLTMLELLEKYPACEMKFSEFIALLPSIRPRYYSISSSPRVDEKQASITVSVVSGEAWSGYGEYKGIASNYLAELQEGDTITCFISTPQSEFTLPKDPETPLIMVGPGTGVAPFRGFVQARKQLKEQGQSLGEAHLYFGCRSPHEDYLYQEELENAQSEGIITLHTAFSRMPNQPKTYVQHVMEQDGKKLIELLDQGAHFYICGDGSQMAPAVEATLMKSYADVHQVSEADARLWLQQLEEKGRYAKDVWAG
|
| 129 |
+
>seq_849a15c2d4c68e19769e3cd4
|
| 130 |
+
MTIKEMPQPKTFGELKNLPLLNTDKPVQALMKIADELGEIFKFEAPGRVTRYLSSQRLIKEACDESRFDKELSQGLKFLRDFLGDGLPTSWTHEKNWKKAHNILLPSFSQQAMKGYHASMVDIAVQLVQKWERLNADEHIEVSEDMTRLTLDTIGLCGFNYRLNSFYRDQPHPFIISLVRALDEVMNKLQRANPDDPAYDENKRQFQEDIKVMNDLVDKIIADRKARGEQSDDLLTQMLNGKDPETGEPLDDGNIRYQIITFLYSGVEGTSGLLSFALYFLVKNPHVLQKVAEEAARVLVDPVPSYKQVKQLKYVGMVLNEALRLWPVVPYFALYAKEDTVLGGEYPLEKGDEVMVLIPQLHRDKTVWGDDVEEFRPERFENPSAIPQHAFKPFGNGQRASLGQQFALHEATLVLGMMLKHFDFEDHTNYELDIKELQTLKPKGFVVKAKSKKIPLGGIPSPSTEQSAKKVRKKAENAHNTPLLVLYGSNMGTAEGTARDLADIAMSKGFAPQVATLDSHAGNLPREGAVLIVTASYNGHPPDNAKQFVDWLDQASADEVKGVRYSVFGCGDKNWATTYQKVPAFIDETLAAKGAENIADRGEADASDDFEGTYEEWREHMWSDVAAYFNLDIENSEDNKSTLSLQFVDSAADMPLAKMHGAFST
|
| 131 |
+
>seq_878922a570b9863a02d7fbd5
|
| 132 |
+
MKGYFGPYGGQYVPEILMGALEELEAAYEGIMKDESFWIGYNDLLRDYAGRPTQLYFARRLSEKYGARVYLKREDLLHTGAHKINGAIGQVLLAKLMGKTRIIAETGAGQHGVATATAAALFGMECVIYMGEEDTIRQKLNVERMKLLGAKVVPVKSGSRTLKDAIDEALRDWTTNLQTTYYVHGSVVGPHPYPIITRNFQKVIGEETKKQIPEKEGRLPDYIVACVGGGSNAAGIFYPFIDSGVKLIGVEAGGEGLETGKHAASLLKGKIGYLHGSKTFVLQDDWGQVQVSHSVSAGLDYSGVGPEHAYWRETGKVLYDAVTDEEALDAFIELSRLEGIIPALESSHALAYLKKINIKGKVVVVNLSGRGDKDLESVLNHPYVRERIR
|
| 133 |
+
>seq_884aa2e323db59bf0ede8170
|
| 134 |
+
MKGYFGPYGGQYVPEILMGALEELEAAYEGIMKDESFWKEFNDLLRDYAGRPTPLYFARRLSEKYGARVYLKREDLLHTGAHKINNAIGQVLLAKLMGKTRIIAGTGAGQHGVATATAAALFGMECVIYMGEEDTIRQKLNVERMKLLGAKVVPVKSGSRTLKDAIDEALRDWITNLQTTYYVFGSVVGPHPYPIIVRNFQKVIGEETKKQIPEKEGRLPDYIVACVSGGSNAAGIFYPFIDSGVKLIGVEAGGEGLETGKHAASLLKGKIGYLHGSKTFVLQDDWGQVQVSHSVSAGLDYSGVGPEHAYWRETGKVLYDAVTDEEALDAFIELSRLEGIIPALESSHALAYLKKINIKGKVVVVNLSGRGDKDLESVLNHPYVRERIR
|
| 135 |
+
>seq_8a0792def4d2f8b9fa91eb32
|
| 136 |
+
MKGYFGPYGGQYVPEILMGALEELEAAYEGIMKDESFWKEFNDLLRDYAGRPTPLYFARRLSEKYGARVYLKREDLLHTGAHKINNAIGQVLLAKLMGKTRIIAETGAGQHGVATATAAALFGMECVIYMGEEDTIRQKLNVERMKLLGAKVVPVKSGSRTLKDAIDEALRDWITNLQTTYYVFGSVVGPHPYPIIVRNFQKVIGEETKKQIPEKEGRLPDYIVACVSGGSNAAGIFYPFIDSGVKLIGVEAGGEGLETGKHAASLLKGKIGYLHGSKTFVLQDDWGQVQVSHSVSAGLDYSGVGPEHAYWRETGKVLYDAVTDEEALDAFIELSRLEGIIPALESSHALAYLKKINIKGKVVVVNLSGRGDKDLESVLNHPYVRERIR
|
| 137 |
+
>seq_8e9203127d9c021519b49682
|
| 138 |
+
MAVPGYDFGKVPDAPISDADFESLKKTVMWGEEDEKYRKMACEALKGQVEDILDLWYGLQGSNQHLIYYFGDKSGRPIPQYLEAVRKRFGLWIIDTLCKPLDRQWLNYMYEIGLRHHRTKKGKTDGVDTVEHIPLRYMIAFIAPIGLTIKPILEKSGHPPEAVERMWAAWVKLVVLQVAIWSYPYAKTGEWLE
|
| 139 |
+
>seq_9016a176f1bbfd418a63231a
|
| 140 |
+
MGSSHHHHHHSSMSNVKQQTAQIVDWLSSTLGKDHQYREDSLSLTANENYPSALVRLTSGSTAGAFYHCSFPFEVPAGEWHFPEPGHMNAIADQVRDLGKTLIGAQAFDWRPNGGSTAEQALMLAACKPGEGFVHFAHRDGGHFALESLAQKMGIEIFHLPVNPTSLLIDVAKLDEMVRRNPHIRIVILDQSFKLRWQPLAEIRSVLPDSCTLTYDMSHDGGLIMGGVFDSPLSCGADIVHGNTHKTIPGPQKGYIGFKSAQHPLLVDTSLWVCPHLQSNCHAEQLPPMWVAFKEMELFGRDYAAQIVSNAKTLARHLHELGLDVTGESFGFTQTHQVHFAVGDLQKALDLCVNSLHAGGIRSTNIEIPGKPGVHGIRLGVQAMTRRGMKEKDFEVVARFIADLYFKKTEPAKVAQQIKEFLQAFPLAPLAYSFDNYLDEELLAAVYQGAQR
|
| 141 |
+
>seq_92a1f142b118683e9ec62d91
|
| 142 |
+
MTIKEMPQPKTFGELKNLPLLNTDKPVQALMKIADELGEIFKFEAPGQVTRYLSSQRLIKEACDESRFDKNLSQALKFARDFAGDGLVTSWTHEKNWKKAHNILLPSFSQQAMKGYHAMMVDIAVQLVQKWERLNADEHIEVSEDMTRLMLDTIGLCGFNYRFNSFYRDQPHPFIISQVRALDEVMNKLQRANPDDPAYDENKRQFQEDIKVMNDLVDKIIADRKARGEQSDDFLTQMLNGKDPETGETLDDGNIRYQIITFLYAGPEATSGLLSFALYFLVKNPHVLQKVAEEAARVLVDPVPSYKQVKQLKYVGMVLNEALRLWPVAPTFSLYAKEDTVLGGEYPLEKGDEVMVLIPQLHRDKTVWGDDVEEFRPERFENPSAIPQHAFKPFGNGQRASIGQQFALHEATLVLGMMLKHFDFEDHTNYELDIKEGFTLKPKGFVVKAKSKKIPLGGIPSPSTEQSAKKVRKKAENAHNTPLLVLYGSNMGTAEGTARDLADIAMSKGFAPQVATLDSHAGNLPREGAVLIVTASYNGHPPDNAKQFVDWLDQASADEVKGVRYSVFGCGDKNWATTYQKVPAFIDETLAAKGAENIADRGEADASDDFEGTYEEWREHMWSDVAAYFNLDIENSEDNKSTLSLQFVDSAADMPLAKMHGAFSTNVVASKELQQPGSARSTRHLEIELPKEASYQEGDHLGVIPRNYEGIVNRVTARFGLDASQQIRLEAEEEKLAHLPLAKTVSVEELLQYVELQDPVTRTQLRAMAAKTVCPPHKVELEALLEKQAYKEQVLAKRLTMLELLEKYPACEMKFSEFIALLPSIRPRYYSISSSPRVDEKQASITVSVVSGEAWSGYGEYKGIASNYLAELQEGDTITCFISTPQSEFTLPKDPETPLIMVGPGTGVAPFRGFVQARKQLKEQGQSLGEAHLYFGCRSPHEDYLYQEELENAQSEGIITLHTAFSRMPNQPKTYVQHVMEQDGKKLIELLDQGAHFYICGDGSQMAPAVEATLMKSYADVHQVSEADARLWLQQLEEKGRYAKDVWAG
|
| 143 |
+
>seq_948feeccc6c4d08316c46fe8
|
| 144 |
+
MAHHWGYGKHNGPEHWHKDFPIAKGERQSPVDIDTHTAKYDPSLKPLSVSYDQATSLRIVNNGHTFWVEFDDSQDKAVLKGGPLDGTYRLIFFHFHWGSLDGQGSEHTVDKKKYAAELHLVHWNTKYGDFGKAVQQPDGLAVLGIFLKVGSAKPGLQKVVDVLDSIKTKGKSADFTNFDPRGLLPESLDYWTYPGSMTTPPLLESVTWIVLKEPISVSSEQVLKFRKLNFNGEGEPEELMVDNWRPAQPLKNRQIKASFK
|
| 145 |
+
>seq_951332d30e2d60ca1c93f273
|
| 146 |
+
MKGYFGPYGGQYVPEILMGALEELEAAYEGIMKDESFWKEFNDLLRDYAGRPTPLYFARRLSEKYGARVYLKREDLLHTGAHKINNAIGQVLLAKLMGKTRIIAETGAGQHGVATATAAALFGMECVIYMGEEDTIRQKLNVERMKLLGAKVVPVKSGSRTLKDAIDEALRDWITNLQTTYYVFACVVGPHPYPIIVRNFQKVIGEETKKQIPEKEGRLPDYIVACVSGGSNAAGIFYPFIDSGVKLIGVEAGGEGLETGKHAASLLKGKIGYLHGSKTFVLQDDWGQVQVSHSVSAGLDYSGVGPEHAYWRETGKVLYDAVTDEEALDAFIELSRLEGIIPALESSHALAYLKKINIKGKVVVVNLSGRGDKDLESVLNHPYVRERIRL
|
| 147 |
+
>seq_96a0e26fe3bd38769f978c5d
|
| 148 |
+
MTIKEMPQPKTFGELKNLPLLNTDKPVQALMKIADELGEIFKFEAPGRVTRYISSQRLIKEACDESRFDKNLSQALKFVRDFAGDGLFTSWTHEKNWKKAHNILLPSFSQQAMKGYHAMMVDIAVQLVQKWERLNADEHIEVPEDMTRLTLDTIGLCGFNYRFNSFYRDQPHPFITSMVRALDEAMNKLQRANPDDPAYDENKRQFQEDIKVMNDLVDKIIADRKASGEQSDDLLTHMLNGKDPETGEPLDDENIRYQIITFLIAFHEAVSGWLSFALYFLVKNPHVLQKAAEEAARVLVDPVPSYKQVKQLKYVGMVLNEAIRLWPTAPAFSLYAKEDTVLGGEYPLEKGDELMLIPQLHRDKTVWGDDVEEFRPERFENPSAIPQHAFKPFGNGQRAGIGQQMSLHEATLVLGMMLKHFDFEDHTNYELDIKETLTLKPEGFVVKAKSKKIPLGGIPSPSTLEHHHHHH
|
| 149 |
+
>seq_9798b6f1bc79f77203ba843f
|
| 150 |
+
TESGTAAQDPEALAAEIGPVKQVSLGEQIDAALAQQGEQLFNTYCTACHRLDERFIGPALRDVTKRRGPVYIMNMMLNPNGMIQRHPVMKQLVQEYGTALPNQALSEEQARAILEYLRQVAENQ
|
| 151 |
+
>seq_98038065bfb59c69a94a7f82
|
| 152 |
+
MYDWFSEMRKKDPVYYDGNIWQVFSYRYTKEVLNNFSKFSSDLTGYHERLEDLRNGKIRFDIPTRYTMLTSDPPLHDELRSMSADIFSPQKLQTLETFIRETTRSLLDSIDPREDDIVKKLAVPLPIIVISKILGLPIEDKEKFKEWSDLVAFRLGKPGEIFELGKKYLELIGYVKDHLNSGTEVVSRVVNSNLSDIEKLGYIILLLIGGNEATTNLISNSVIDFTRFNLWQRIREENLYLKAIEEALRYSPPAMRTVRKTKERVKLGDQTIEEGEYVRVWIASANRDEEVFHDGEKFIPDRNPNPHLSFGSGIHLSLGAPLARLEARIAIEEFSKRFRHIEILDTEKVPNEVLNGYKRLVVRLKSNE
|
| 153 |
+
>seq_98c15bb7ea47a611564e203f
|
| 154 |
+
MKYLLPTAAAGLLLLAAQPAMAHHHHHHQDPEALAAEIGPVKQVSLGEQIDAALAQQGEQLFNTYCTACHRLDERFIGPALRDVTKRRGPVYIMNTMLNPNGMIQRHPVMKQLVQEYGTMDTDEALSEEQARAILEYLRQVAENQ
|
| 155 |
+
>seq_996f2f3e53a7187d0f275ee9
|
| 156 |
+
MPSLFDPIRFGAFTAKNRIWMAPLTRGRATRDHVPTEIMAEYYAQRASAGLIISEATGISQEGLGWPYAPGIWSDAQVEAWLPITQAVHDAGGLIFAQLWHMGRMVPSNVSGMQPVAPSASQAPGLGHTYDGKKPYDVARALRLDEIPRLLDDYEKAARHALKAGFDGVQIHAANGYLIDEFIRDSTNHRHDEYGGAVENRIRLLKDVTERVIATIGKERTAVRLSPNGEIQGTVDSHPEQVFIPAAKMLSDLDIAFLGMREGAVDGTFGKTDQPKLSPEIRKVFKPPLVLNQWYTFETAQAALDSGVADAISFGRPFIGNPDLPRRFFEKAPLTKDVIETWWTQTPKGYTDYPLLGDLEHHHHHH
|
| 157 |
+
>seq_9d0eab3fb86249757e512a79
|
| 158 |
+
MTIKEMPQPKTFGELKNLPLLNTDKPVQALMKIADELGEIFKFEAPGRVTRYLSSQRLIKEACDESRFDKNLSQALKFVRDFAGDGLATSWTHEKNWKKAHNILLPSFSQQAMKGYHAMMVDIAVQLVQKWERLNADEHIEVPEDMTRLTLDTIGLCGFNYRFNSFYRDQPHPFITSMVRALDEAMNKLQRANPDDPAYDENKRQFQEDIKVMNDLVDKIIADRKASGEQSDDLLTHMLNGKDPETGEPLDDENIRYQIITFLIAGHETTSGLLSFALYFLVKNPHVLQKAAEEAARVLVDPVPSYKQVKQLKYVGMVLNEALRLWPTAPAFSLYAKEDTVLGGEYPLEKGDELMVLIPQLHRDKTIWGDDVEEFRPERFENPSAIPQHAFKPFGNGQRACIGQQFALHEATLVLGMMLKHFDFEDHTNYELDIKETLTLKPEGFVVKAKSKKIPLGGIPSTHHHHHH
|
| 159 |
+
>seq_9d443d6ef6c4916758e21949
|
| 160 |
+
MASMTGGQQMGRDQAGITGTWYNQLGSTFIVTAGADGALTGTYESAVGNAESRYVLTGRYDSAPATDGSGTALGWTVAWKNNYRNAHSATTWSGQYVGGAEARINTQWLLTSGTTEANAWVSTLVGHDTFTKVKPSAASIDAAKKAGVNNGNPLDAVQQ
|
| 161 |
+
>seq_9d63f4b11571e5f41ab7523c
|
| 162 |
+
MAVPGYDFGKVPDAPISDADFESLKKTVMWGEEDEKYRKMACEALKGQVEDILDLFKGFNGSNQHLIYYFGDKSGRPIPQYLEAVRKRYGLWIIDTLCKPLDRQWLNYMYEIGLRHHRTKKGKTDGVDTVEHIPLRYMIAFIAPIGLTIKPILEKSGHPPEAVERMWAAWVKLVVLQVAIWSYPYAKTGEWLE
|
| 163 |
+
>seq_9dc4d8b84f4989d5a0ff8bba
|
| 164 |
+
MTIKEMPQPKTFGELKNLPLLNTDKPVQALMKIADELGEIFKFEAPGRVTRYLSSQRLIKEACDESRFDKSLSQGLKFLRDFLGDGLATSWTHEKNWKKAHNILLPSFSQQAMKGYHAMMVDIAVQLVQKWERLNADEHIEVSEDMTRLTLDTIGLCGFNYRFNSFYRDQPHPFIISMVRALDEVMNKLQRANPDDPAYDENKRQFQEDIKVMNDLVDKIIADRKARGEQSDDLLTQMLNGKDPETGEPLDDGNIRYQIITFLMAGHEGTSGLLSFALYFLVKNPHVLQKVAEEAARVLVDPVPSYKQVKQLKYVGMVLNEALRLWPPVPAFSLYAKEDTVLGGEYPLEKGDEVMVLIPQLHRDKTVWGDDVEEFRPERFENPSAIPQHAFKPFGNGQRASIGQQFALHEATLVLGMMLKHFDFEDHTNYELDIKELATLKPKGFVVKAKSKKIPLGGIPSPSTEQSAKKVRKKAENAHNTPLLVLYGSNMGTAEGTARDLADIAMSKGFAPQVATLDSHAGNLPREGAVLIVTASYNGHPPDNAKQFVDWLDQASADEVKGVRYSVFGCGDKNWATTYQKVPAFIDETLAAKGAENIADRGEADASDDFEGTYEEWREHMWSDVAAYFNLDIENSEDNKSTLSLQFVDSAADMPLAKMHGAFST
|
| 165 |
+
>seq_9f4dfd197c4d380e984add65
|
| 166 |
+
MTIKEMPQPKTFGELKNLPLLNTDKPVQALMKIADELGEIFKFEAPGRVTRYLSSQRLIKEACDESRFDKELSQGLKFLRDFLGDGLATSWTHEKNWKKAHNILLPSFSQQAMKGYHASMVDIAVQLVQKWERLNADEHIEVSEDMTRLTLDTIGLCGFNYRLNSFYRDQPHPFIISLVRALDEVMNKLQRANPDDPAYDENKRQFQEDIKVMNDLVDKIIADRKARGEQSDDLLTQMLNGKDPETGEPLDDGNIRYQIITFLYAGVEGTSGLLSFALYFLVKNPHVLQKVAEEAARVLVDPVPSYKQVKQLKYVGMVLNEALRLWPTVPYFSLYAKEDTVLGGEYPLEKGDEVMVLIPQLHRDKTVWGDDVEEFRPERFENPSAIPQHAFKPFGNGQRASLGQQFALHEATLVLGMMLKHFDFEDHTNYELDIKELITLKPKGFVVKAKSKKIPLGGIPSPSTEQSAKKVRKKAENAHNTPLLVLYGSNMGTAEGTARDLADIAMSKGFAPQVATLDSHAGNLPREGAVLIVTASYNGHPPDNAKQFVDWLDQASADEVKGVRYSVFGCGDKNWATTYQKVPAFIDETLAAKGAENIADRGEADASDDFEGTYEEWREHMWSDVAAYFNLDIENSEDNKSTLSLQFVDSAADMPLAKMHGAFST
|
| 167 |
+
>seq_a18dcd7e1dad906a031a2aeb
|
| 168 |
+
MPFVKDFKPQALGDTNLFKPIKIGNNELLHRAVIPPLTRMRAQHPGNIPNRDWAVEYYAQRAQRPGTLIITEGTFPSPQSGGYDNAPGIWSEEQIKEWTKIFKAIHENKSFAWVQLWVLGWAAFPDTLARDGLRYDSASDNVYMNAEQEEKAKKANNPQHSITKDEIKQYVKEYVQAAKNSIAAGADGVEIHSANGYLLNQFLDPHSNNRTDEYGGSIENRARFTLEVVDAVVDAIGPEKVGLRLSPYGVFNSMSGGAETGIVAQYAYVLGELERRAKAGKRLAFVHLVEPRVTNPFLTEGEGEYNGGSNKFAYSIWKGPIIRAGNFALHPEVVREEVKDPRTLIGYGRFFISNPDLVDRLEKGLPLNKYDRDTFYKMSAEGYIDYPTYEEALKLGWDKN
|
| 169 |
+
>seq_a2744863b99e74d192869d7a
|
| 170 |
+
MGSSHHHHHHSSGLVPRGSHMIDLRSDTVTKPTEEMRKAMAQAEVGDDVYGEDPTINELERLAAETFGKEAALFVPSGTMGNQVSIMAHTQRGDEVILEADSHIFWYEVGAMAVLSGVMPHPVPGKNGAMDPDDVRKAIRPRNIHFPRTSLIAIENTHNRSGGRVVPLENIKEICTIAKEHGINVHIDGARIFNASIASGVPVKEYAGYADSVMFCLSKGLCAPVGSVVVGDRDFIERARKARKMLGGGMRQAGVLAAAGIIALTKMVDRLKEDHENARFLALKLKEIGYSVNPEDVKTNMVILRTDNLKVNAHGFIEALRNSGVLANAVSDTEIRLVTHKDVSRNDIEEALNIFEKLFRKFS
|
| 171 |
+
>seq_a2c96bc702a36bc584aabfb1
|
| 172 |
+
MKGYFGPYGGQYVPEILMGALEELEAAYEGIMKDESFWKEFNDLLRDYAGRPTPLYFARRLSEKYGARVYLKREDLLHTGAHKINNAIGQVLLAKLMGKTRIIAETGAGQHGVATATAAALFGMECVIYMGEEDTIRQKLNVERMKLLGAKVVPVKSGSRTLKDAIDEALRDWITNLQTTYYGSGSVVGPHPYPIIVRNFQKVIGEETKKQIPEKEGRLPDYIVACHSGGSNAAGIFYPFIDSGVKLIGVEAGGEGLETGKHAASLLKGKIGYLHGSKTFVLQDDWGQVQVSHSVSAGLDYSGVGPEHAYWRETGKVLYDAVTDEEALDAFIELSRLEGIIPALESSHALAYLKKINIKGKVVVVNLSGRGDKDLESVLNHPYVRERIRL
|
| 173 |
+
>seq_a45082e7ad53e266be7ca1c8
|
| 174 |
+
MGLSDGEWQLVLNVWGKVEADIPGHGQEVLIRLFKGHPETLEKFDKFKHLKSEDEMKASEDLKKVGATALTALGGILKKKGHHEAEIKPLAQSHATKHKIPVKYLEFISECIIQVLQSKHPGDFGADAQGAMNKALELFRKDMASNYKELGFQG
|
| 175 |
+
>seq_a8876f102d5d27bb2318e982
|
| 176 |
+
MTESGTAAQDPEALAAEIGPVKQVSLGEQIDAALAQQGEQLFNTYCTACHRLDERFIGPALRDVTKRRGPVYIMNTMLNPNGMIQRHPVMKQLVQEYGTMMDDEALSEEQARAILEYLRQVAENQLE
|
| 177 |
+
>seq_aa5efdfe0b0107602ab17d21
|
| 178 |
+
MTIKEMPQPKTFGELKNLPLLNTDKPVQALMKIADELGEIFKFEAPGRVTRYLSSQRLIKEACDESRFDKNLSQILKFVRDFAGDGLFTSWTHEKNWKKAHNILLPSFSQQAMKGYHAMMVDIAVQLVQKWERLNADEHIEVPEDMTRLTLDTIGLCGFNYRFNSFYRDQPHPFITSMVRALDEAMNKLQRANPDDPAYDENKRQFQEDIKVMNDLVDKIIADRKASGEQSDDLLTHMLNGKDPETGEPLDDENIRYQIITFLIAGHETTSGLLSFALYFLVKNPHVLQKAAEEAARVLVDPVPSYKQVKQLKYVGMVLNEALRLWPTAPAFSLYAKEDTVLGGEYPLEKGDELMVLIPQLHRDKTIWGDDVEEFRPERFENPSAIPQHAFKPFGNGQRACIGQQFALHEATLVLGMMLKHFDFEDHTNYELDIKETVTLKPTGFVVKAKSKKIPLGGIPSPSTEQSAKKVRKKAENAHNTPLLVLYGSNMGTAEGTARDLADIAMSKGFAPQVATLDSHAGNLPREGAVLIVTASYNGHPPDNAKQFVDWLDQASADEVKGVRYSVFGCGDKNWATTYQKVPAFIDETLAAKGAENIADRGEADASDDFEGTYEEWREHMWSDVAAYFNLDIENSEDNKSTLSLQFVDSAADMPLAKMHGAFSTNVVASKELQQPGSARSTRHLEIELPKEASYQEGDHLGVIPRNYEGIVNRVTARFGLDASQQIRLEAEEEKLAHLPLAKTVSVEELLQYVELQDPVTRTQLRAMAAKTVCPPHKVELEALLEKQAYKEQVLAKRLTMLELLEKYPACEMKFSEFIALLPSIRPRYYSISSSPRVDEKQASITVSVVSGEAWSGYGEYKGIASNYLAELQEGDTITCFISTPQSEFTLPKDPETPLIMVGPGTGVAPFRGFVQARKQLKEQGQSLGEAHLYFGCRSPHEDYLYQEELENAQSEGIITLHTAFSRMPNQPKTYVQHVMEQDGKKLIELLDQGAHFYICGDGSQMAPAVEATLMKSYADVHQVSEADARLWLQQLEEKGRYAKDVWAGLEHHHHHH
|
| 179 |
+
>seq_aad0d4885020c72340512c0a
|
| 180 |
+
MIDQKEKELIKESWKRIEPNKNEIGLLFYANLFKEEPTVSVLVQSPISSVSRKAMQVLGILVQGIDNLEGLIPTLQDLGRRHKQYGVVDSHYPLVGDCLLKSIQEYLGQGFTEEAKAAWTKVYGIAAQVMTAEHHHHHH
|
| 181 |
+
>seq_abe5f7fe3c0807025992802a
|
| 182 |
+
MPSLFDPIRFGAFTAKNRIWMAPLTRGRATRDHVPTEIMAEYYAQRASAGLIISEATGISQEGLGWPYAPGIWSDAQVEAWLPITQAVHDAGGLIFAQLWHMGRMVPSNVSGMQPVAPSASQAPGLGHTYDGKKPYDVARALRLDEIPRLLDDYEKAARHALKAGFDGVQIHAANGYLIDEFIRDSTNHRHDEYGGAVENRIRLLKDVTERVIATIGKERTAVRLSPNGEIQGTVDSHPEQVFIPAAKMLSDLDIAFLGMREGAVDGTFGKTDQPKLSPEIRKVFKPPLVLNQDYTFETAQAALDSGVADAISFGRPFIGNPDLPRRFFEKAPLTKDVIETWYTQTPKGYTDYPLLGDHHHHHH
|
| 183 |
+
>seq_ad50006c2cec43fb155f1530
|
| 184 |
+
VLSEGEWQLVLHVWAKVEADVAGHGQEVLIRLFKGHPETLEKFKDKFKHLKSEDEMKASEDLKKHGATVLTALGGILKKKGHHEAEIKPLAQSSATKHKIPIKYLEFISEAIIHVLHSRHPGDFGADAQGAMNKALELFRKDIAAKYKELGYQG
|
| 185 |
+
>seq_ae5f5afa1a429efa46b1871b
|
| 186 |
+
MTSSGVYTIAEVEAMTGLSAEVLRQWERRYGFPKPRRTPGGHRLYSAEDVEALKTIKRWLEEGATPKAAIRRYLAQEVRPEDLGTGLLEALLRGDLAGAEALFRRGLRFWGPEGVLEHLLLPVLREVGEAWGRGEIGVAEEHLASTFLRARLQELLDLAGFPPGPPVLVTTPPGERHEIGAMLAAYHLRRKGVPALYLGPDTPLPDLRALARRLGAGTVVLSAVLSEPLRALPDGALKDLAPRVFLGGQGAGPEEARRLGAEYMEDLKGLAEALWLPRGPEKEAI
|
| 187 |
+
>seq_b19596b3a7cc32ea02cc78d6
|
| 188 |
+
MKGYFGPYGGQYVPEILMGALEELEAAYEGIMKDESFWKEFNDLLRDYAGRPTPLYFARRLSEKYGARVYLKREDLLHTGAHKINNAIGQVLLAKLMGKTRIIAETGAGQHGVATAFFRALFGMECVIYMGEEDTIRQKLNVERMKLLGAKVVPVKSGSRTLKDAIDEALRDWITNLQTTYYVFGSVVGPHPYPIIVRNFQKVIGEETKKQIPEKEGRLPDYIVACVSGGSNAAGIFYPFIDSGVKLIGVEAGGEGLETGKHAASLLKGKIGYLHGSKTFVLQDDWGQVQVSHSVSAGLDYSGVGPEHAYWRETGKVLYDAVTDEEALDAFIELSRLEGIIPALESSHALAYLKKINIKGKVVVVNLSGRGDKDLESVLNHPYVRERIRL
|
| 189 |
+
>seq_b3661f2577ef49e7685018b2
|
| 190 |
+
MASMTGGQQMGRDEAGITGTWYNQLGSTFIVTAGADGALTGTYESAVGNAESRYVLTGRYDSAPATDGSGTALGWTVAWKNNYRNAHSATTWSGQYVGGAEARINTQWLLTAGTTEAPAWASTLVGHDTFTKVKPSAASIDAAKKAGVNNGNPLDAVQQ
|
| 191 |
+
>seq_b3e9664963db1b71ede96254
|
| 192 |
+
MKGYFGPYGGQYVPEILMGALEELEAAYEGIMKDESFWKEFNDLLRDYAGRPTPLYFARRLSEKYGARVYLKREDLLHTGAHKINNAIGQVLLAKLMGKTRIIAEAAAGQHGVATATAAALFGMECVIYMGEEDTIRQKLNVERMKLLGAKVVPVKSGSRTLKDAIDEALRDWITNLQTTYYVFGSVVGPHPYPIIVRNFQKVIGEETKKQIPEKEGRLPDYIVACVSGGSNAAGIFYPFIDSGVKLIGVEAGGEGLETGKHAASLLKGKIGYLHGSKTFVLQDDWGQVQVSHSVSAGLDYSGVGPEHAYWRETGKVLYDAVTDEEALDAFIELSRLEGIIPALESSHALAYLKKINIKGKVVVVNLSGRGDKDLESVLNHPYVRERIRL
|
| 193 |
+
>seq_b7b3fc8ec7ee6561e8a9e317
|
| 194 |
+
MERTANPADVPAGGKSSEGKAGTPPAAEAQCPFSKMAADFDAFAGPYQADPAEALRWSRDQLPVFYSPNLGYWVVSRYDDIKAVFRDNILFSPRNALEKITPATPEAMEVLKGYGYAMNRAMINEDEPVHMERRRALMGHFLPDNLEARQEMVRRLTREKIDAFIDSGRVDLVEAMLYEVPLNVALHFLGVPEDDIAILKKFSVAHSVSTWGKPTDEQQVAIAHDVGQFWNYAGKIIEKMRKEPDGTGWMHETIRKNAEMPDIVPDSYVHSMMMAIIVAAHETTSLASAGMFKTLLTHRQAWQDICEDPSLIPNAVEECLRYSGSVVAWRRQATAATRIGGVDIPEGAKLLIVQASGNQDERHFEDGDKFDIYRDNAVDHLTFGHGSHQCMGKNIARMEMRIFLEEMTRRLPHLQLAGQEFTYLSNTSFRGPDHVWVEWDPEKNPERADPSLANGNHRFPVGAPARRDIARKIRIKTVRREADGILGLTIEDAKGRSLPRWSAGAHIEVCVDGFDRKYSLCGRADSRDYDIAVLLEEGGRGGSRRIHEVAAEGLELRLRGPSNLFRLDEQARSYVLIAGGIGITPILAMADHLKALGRDYTIHYCGRSRRSMAFLDRLQADHGERLSVHAGDENRHAELAGIVASLPEGGQIYACGPERMISELEDLTARLPHGTLHFEHFSAQETALDPSKENAFQVELKDSGLTLEVAANVTLLDALLASGIDISCDCREGLCGSCEVEVLEGEIDHRDVVLTRTERAENRRMMSCCSRSVKGGKLKLALLEHHHHHH
|
| 195 |
+
>seq_b842c993f9e9e3e80cffb546
|
| 196 |
+
MPRYLKGWLEDVVQLSLRRPSVHASRQRPIISLNERILEFNKRNITAIIAYYLRKSPSGLDVERDPIEYAKYMEPYAVGLSIKTEEKYFDGSYEMLRKIASSVSIPILMNDFIVKESQIDDAYNLGADTVLLIVEILTERELESLLEYARGYGMEPLILINDENDLDIALRIGARFITIYSMNFETGEINKENQRKLISMIPSNVVKVPLLDFFEPNEIEELRKLGVNAFMISSSLMRNPEKIKELIEGSLEHHHHHH
|
| 197 |
+
>seq_b909866808df15f1f1d441ac
|
| 198 |
+
MTESGTAAQDPEALAAEIGPVKQVSLGEQIDAALAQQGEQLFNTYCTACHRLDERFIGPALRDVTKRRGPVYIMNRMLNPNGMIQRHPVMKQLVQEYGTMMDDTALSEEQARAILEYLRQVAENQLE
|
| 199 |
+
>seq_b9e3ad6bb14ebb97a08d853c
|
| 200 |
+
MASMTGGQQMGRDQAGITGTWYNQLGSTFIVTAGADGALTGTYESAVGNAESRYVLTGRYDSAPATDGSGTALGWTVAWKNNYRNAHSATTWSGQYVGGAEARINTQWLLTSGTTEANAWKSTLVGHDTFTKVKPSAASIDAAKKAGVNNGNPLDAVQQ
|
| 201 |
+
>seq_bac6fdad1c0e60c1c9773828
|
| 202 |
+
MGLSDGEWQLVLNVWGKVEADIPGHGQEVLIRLFKGHPETLEKFDKFKHLKSEDEMKASEDLKKHGATVLTALGGILKKKGHHEAEIKPLAQSHATKHKIPVKYLEFISECIIQVLQSKHPGDFGADAQGAMNKALELFRKDMASNYKELGFQG
|
| 203 |
+
>seq_beba08b4acebe98bf4da82d9
|
| 204 |
+
MGYTVGDYLLDRLHELGIEEIFGVPGDYNLQFLDQIISHKDMKWVGNANELNASYMADGYARTKKAAAFLTTFGVGELSAVNGLAGSYAENLPVVEIVGSPTSKVQNEGKFVHHTLADGDFKHFMKMHEPVTAARTLLTAENATVEIDRVLSALLKERKPVYINLPVDVAAAKAEKPSLPLKKENSTSNTSDQEILNKIQESLKNAKKPIVITGHEIISFGLEKTVTQFISKTKLPITTLNFGKSSVDEALPSFLGIYNGTLSEPNLKEFVESADFILMLGVKLTDSSTGAFTHHLNENKMISLNIDEGKIFNERIQNFDFESLISSLLDLSEIEYKGKYIDKKQEDFVPSNALLSQDRLWQAVENLTQSNETIVAEQGTSFFGASSIFLKSKSHFIGQPLWGSIGYTFPAALGSQIADKESRHLLFIGDGSLQLTVQELGLAIREKINPICFIINNDGYTVEREIHGPNQSYNDIPMWNYSKLPESFGATEDRVVSKIVRTENEFVSVMKEAQADPNRMYWIELILAKEGAPKVLKKMGKLFAEQNKSLEHHHHHH
|
| 205 |
+
>seq_c1b3c7673b6fcafe333fdefa
|
| 206 |
+
TIKEMPQPKTFGELKNLPLLNTDKPVQALMKIADELGEIFKFEAPGRVTRYLSSQRLIKEACDESRFDKNLSQALKFARDFAGDGLFTSWTHEKNWKKAHNILLPSFSQQAMKGYHAMMVDIAVQLVQKWERLNADEHIEVSEDMTRLTLDTIGLCGFNYRFNSFYRDQPHPFIISMVRALDEVMNKLQRANPDDPAYDENKRQFQEDIKVMNDLVDKIIADRKARGEQSDDLLTQMLNGKDPETGEPLDDGNIRYQIITFLFAGHEGTSGLLSFALYFLVKNPHVLQKVAEEAARVLVDPVPSYKQVKQLKYVGMVLNEALRLWPTVPAFSLYAKEDTVLGGEYPLEKGDEVMVLIPQLHRDKTVWGDDVEEFRPERFENPSAIPQHAFKPFGNGQRASIGQQFALHEATLVLGMMLKHFDFEDHTNYELDIKETLSLKPKGFVVKAKSKKIPLGGIPSPSTLEHHHHHH
|
| 207 |
+
>seq_c212073277b54eb769de9cd8
|
| 208 |
+
VLSEGEWQLVLHVWAKVEADVAGHGQEVLIRLFKGHPETLEKLDKFKHLKSEDEMKASEDLKKAGATVLTALGGILKKKGHHEAEIKPLAQSHATKHKIPIKYLEFVSEAIIHVLHSRHPGDFGADAQGAMNKALELFRKDIAAKYKELGYQG
|
| 209 |
+
>seq_c24ed6decd3f7462a3fc4050
|
| 210 |
+
MKGYFGPYGGQYVPEILMGALEELEAAYEGIMKDESFWKEFNDLLRDYAGRPTPLYFARRLSEKYGARVYLKREDLLHTGAHKINNAIGQVLLAKLMGKTRIIFFFGAGQHGVATATAAALFGMECVIYMGEEDTIRQKLNVERMKLLGAKVVPVKSGSRTLKDAIDEALRDWITNLQTTYYVFGSVVGPHPYPIIVRNFQKVIGEETKKQIPEKEGRLPDYIVACVSGGSNAAGIFYPFIDSGVKLIGVEAGGEGLETGKHAASLLKGKIGYLHGSKTFVLQDDWGQVQVSHSVSAGLDYSGVGPEHAYWRETGKVLYDAVTDEEALDAFIELSRLEGIIPALESSHALAYLKKINIKGKVVVVNLSGRGDKDLESVLNHPYVRERIRL
|
| 211 |
+
>seq_c3725670ab00abddafe7d037
|
| 212 |
+
MTIKEMPQPKTFGELKNLPLLNTDKPVQALMKIADELGEIFKFEAPGRVTRYLSSQRLIKEACDESRFDKNLTQKLKFMRDFLGDGLATSWTHEKNWKKAHNILLPSFSQQAMKGYHAMMVDIAVQLVQKWERLNADEHIEVSEDMTRLTLDTIGLCGFNYRFNSFYRDQPHPFIISMVRALDEVMNKLQRANPDDPAYDENKRQFQEDIKVMNDLVDKIIADRKARGEQSDDLLTQMLNGKDPETGEPLDDGNIRYQIITFLMAGSDPVSGLLSFALYFLVKNPHVLQKVAEEAARVLVDPVPSYKQVKQLKYVGMVLNEALRLWPTVPAFSLYAKEDTVLGGEYPLEKGDEVMVLIPQLHRDKTVWGDDVEEFRPERFENPSAIPQHAFKPFGCGQRASIGQQFALHEATLVLGMMLKHFDFEDHTNYELDIKETQGLKPKGFVVKAKSKKIPLGGIPSPSTEQSAKKVRKKAENAHNTPLLVLYGSNMGTAEGTARDLADIAMSKGFAPQVATLDSHAGNLPREGAVLIVTASYNGHPPDNAKQFVDWLDQASADEVKGVRYSVFGCGDKNWATTYQKVPAFIDETLAAKGAENIADRGEADASDDFEGTYEEWREHMWSDVAAYFNLDIENSEDNKSTLSLQFVDSAADMPLAKMHGAFSTNVVASKELQQPGSARSTRHLEIELPKEASYQEGDHLGVIPRNYEGIVNRVTARFGLDASQQIRLEAEEEKLAHLPLAKTVSVEELLQYVELQDPVTRTQLRAMAAKTVCPPHKVELEALLEKQAYKEQVLAKRLTMLELLEKYPACEMKFSEFIALLPSIRPRYYSISSSPRVDEKQASITVSVVSGEAWSGYGEYKGIASNYLAELQEGDTITCFISTPQSEFTLPKDPETPLIMVGPGTGVAPFRGFVQARKQLKEQGQSLGEAHLYFGCRSPHEDYLYQEELENAQSEGIITLHTAFSRMPNQPKTYVQHVMEQDGKKLIELLDQGAHFYICGDGSQMAPAVEATLMKSYADVHQVSEADARLWLQQLEEKGRYAKDVWAG
|
| 213 |
+
>seq_c4dba1696133cb0266fe3937
|
| 214 |
+
MTEQMTGAQALVRALEHVGVDTVFGIPGGAILPAYDPLYDSTKVRHVLVRHEQGAGHAAEGYAQATGRVGVCMATSGPGATNLVTPIADAYMDSVPIVAITGQKSSKLIGTDAFQEADISGITMPITKHNFLVTNADDIPRTIAEAFHIASTGRPGPVLVDIAKDALQATTTFSWPPVMQLPGYRPVTRPHSKQIREAARLMMEAKRPVFYVGGGVHKARASAELRQLVEMTGIPVVTTLMARGTFPDSHPLHMGMPGMHGSVSAVGALQRSDLLIALGTRFDDRVTGELSSFAPHAKVIHADIDPAEISKNRYADVPIVGDCREVLKELIAAVRQEQSQGRRGDYTEWLKLLNGYKKRYPLGYEQYDDGSLAPQYVMERLSAIVGSEAIYVAGVGQHQMWAAQFISHERPGSFINSGGAGTMGFAIPAAMGAKIGRPDATVWAIDGDGCFQMTNQELATCAIEGVPIKVALINNGNLGMVRQWQTLFYDERYSNTSLQRVKRIPDFVKLAEAYGCVGLRCERPEDVDAVINKAMEINDVPVVIDFIVHEDAMVWPMVPAGTSNDDIKYARDMAPKWESEE
|
| 215 |
+
>seq_c57484b0a5fc64847e6d6a68
|
| 216 |
+
MTPSDIPGYDYGRVEKSPITDLEFDLLKKTVMLGEEDVMYLKKAADVLKDQVDEILDLAGGWVASNEHLIYYFSNPDTGEPIKEYLERVRARFGAWVLDTTCRDYNREWLDYQYEVGLRHHRSKKGVTDGVRTVPNTPLRYLIAGIYPITATIKPLLAKKEGSPEDIEGMYNAWLKSVVLQVAIWSHPYTKENDW
|
| 217 |
+
>seq_c57df8e71ab8b52f95ce8c64
|
| 218 |
+
MENGNGATTNGHVNGNGMDFCMKTEDPLYWGIAAEAMTGSHLDEVKKMVAEYRKPVVKLGGETLTISQVAAISARDGSGVTVELSEAARAGVKASSDWVMDSMNKGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNAGIFGNGSDNTLPHSATRAAMLVRINTLLQGYSGIRFEILEAITKFLNQNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAVGPTGVILSPEEAFKLAGVEGGFFELQPKEGLALVNGTAVGSGMASMVLFEANILAVLAEVMSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSAYVKAAQKLHEMDPLQKPKQDRYALRTSPQWLGPQIEVIRSSTKMIEREINSVNDNPLIDVSRNKAIHGGNFQGTPIGVSMDNTRLAIAAIGKLMFAQFSELVNDFYNNGLPSNLSGGRNPSLDYGFKGAECAMASYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISSRKTSEAVEILKLMSTTFLVGLCQAIDLRHLEENLKSTVKNTVSSVAKRVLTMGVNGELHPSRFCEKDLLRVVDREYIFAYIDDPCSATYPLMQKLRQTLVEHALKNGDNERNLSTSIFQKIATFEDELKALLPKEVESARAALESGNPAIPNRIEECRSYPLYKFVRKELGTEYLTGEKVTSPGEEFEKVFIAMSKGEIIDPLLESLESWNGAPLPIS
|
| 219 |
+
>seq_c80ca871d3107c0f7513cde1
|
| 220 |
+
MTIKEMPQPKTFGELKNLPLLNTDKPVQALMKIADELGEIFKFEAPGRVTRYLSSQRLIKEACDESRFDKTLSQGLKFLRDFLGDGLATSWTHEKNWKKAHNILLPSFSQQAMKGYHASMVDIAVQLVQKWERLNADEHIEVSEDMTRLTLDTIGLCGFNYRFNSFYRDQPHPFIISMVRALDEVMNKLQRANPDDPAYDENKRQFQEDIKVMNDLVDKIIADRKATGEQSDDLLTQMLNGKDPETGEPLDDGNIRYQIITFLYAGVEGTSGLLSFALYFLVKNPHVLQKVAEEAARVLVDPVPSYKQVKQLKYVGMVLNEALRLWPVVPVFSLYAKEDTVLGGEYPLEKGDEVMVLIPQLHRDKTVWGDDVEEFRPERFENPSAIPQHAFKPFGNGQRASPGQQFALHEATLVLGMMLKHFDFEDHTNYELDIKELQTLKPKGFVVKAKSKKIPLGGIPSPSTEQSAKKVRKKAENAHNTPLLVLYGSNMGTAEGTARDLADIAMSKGFAPQVATLDSHAGNLPREGAVLIVTASYNGHPPDNAKQFVDWLDQASADEVKGVRYSVFGCGDKNWATTYQKVPAFIDETLAAKGAENIADRGEADASDDFEGTYEEWREHMWSDVAAYFNLDIENSEDNKSTLSLQFVDSAADMPLAKMHGAFST
|
| 221 |
+
>seq_c92aeda1c0cc239e342018a5
|
| 222 |
+
MTIKEMPQPKTFGELKNLPLLNTDKPVQALMKIADELGEIFKFEAPGRVTRYLSSQRLIKEACDESRFDKNLSQAVKFMRDFLGDGLATSWTHEKNWKKAHNILLPSFSQQAMKGYHAMMVDIAVQLVQKWERLNADEHIEVSEDMTRLTLDTIGLCGFNYRFNSFYRDQPHPFIISMVRALDEVMNKLQRANPDDPAYDENKRQFQEDIKVMNDLVDKIIADRKARGEQSDDLLTQMLNGKDPETGEPLDDGNIRYQIITFLMAGHDPTSGLLSFALYFLVKNPHVLQKVAEEAARVLVDPVPSYKQVKQLKYVGMVLNEALRLWPAVPAFSLYAKEDTVLGGEYPLEKGDEVMVLIPQLHRDKTVWGDDVEEFRPERFENPSAIPQHAFKPFGNGQRASIGQQFALHEATLVLGMMLKHFDFEDHTNYELDIKETFGLKPKGFVVKAKSKKIPLGGIPSPSTEQSAKKVRKKAENAHNTPLLVLYGSNMGTAEGTARDLADIAMSKGFAPQVATLDSHAGNLPREGAVLIVTASYNGHPPDNAKQFVDWLDQASADEVKGVRYSVFGCGDKNWATTYQKVPAFIDETLAAKGAENIADRGEADASDDFEGTYEEWREHMWSDVAAYFNLDIENSEDNKSTLSLQFVDSAADMPLAKMHGAFSTNVVASKELQQPGSARSTRHLEIELPKEASYQEGDHLGVIPRNYEGIVNRVTARFGLDASQQIRLEAEEEKLAHLPLAKTVSVEELLQYVELQDPVTRTQLRAMAAKTVCPPHKVELEALLEKQAYKEQVLAKRLTMLELLEKYPACEMKFSEFIALLPSIRPRYYSISSSPRVDEKQASITVSVVSGEAWSGYGEYKGIASNYLAELQEGDTITCFISTPQSEFTLPKDPETPLIMVGPGTGVAPFRGFVQARKQLKEQGQSLGEAHLYFGCRSPHEDYLYQEELENAQSEGIITLHTAFSRMPNQPKTYVQHVMEQDGKKLIELLDQGAHFYICGDGSQMAPAVEATLMKSYADVHQVSEADARLWLQQLEEKGRYAKDVWAG
|
| 223 |
+
>seq_c93042a088ef46592e9eac1b
|
| 224 |
+
MKGYFGPYGGQYVPEILMGALEELEAAYEGIMKDESFWKEFNDLLRDYAGRPTPLYFARRLSEKYGARVYLKREDLLHTGAHKINNAIGQVLLAKLMGKTRIIAETGAGQHGVATATAAALFGMECVIYMGEEDTIRQKLNVERMKLLGAKVVPVKSGSRTLKDALDEALRDWITNLQTTYYVFGSVVGPHPYPIIVRNFQKVIGEETKKQIPEKEGRLPDYIVACVSGGSNAAGIFYPFIDSGVKLIGVEAGGEGLETGKHAASLLKGKIGYLHGSKTFVLQDDWGQVQVSHSVSAGLDASGVGPEHAYWRETGKVLYDAVTDEEALDAFIELSRLEGIIPALESSHALAYLKKINIKGKVVVVNLSGRGDKDLESVLNHPYVRERIRL
|
| 225 |
+
>seq_cba717bef790579dc1aa43a4
|
| 226 |
+
MTRSANSPFEVAIVGGGITGLALAVGLLKRNVSFTIYERAENFGELGVGITFTPNAQRAMEALDPCVLQSFTNVASAPSGGTINFVDGVREQGSEDPRTSTAALLFQLHVKGGYKACRRCDFVDQIVQHIPKDCVQYRKWLDSIETDHESGRAVLKFRDGEIAHADVVIGCDGIRSQVRASMFGTDELCPRAQYSHQLGYRGMVPLAQATAVLGPEKTSSAVLHTGPGAFVLTIPLAEVHAMHIEAFIMDKEEWPEVQTSSDSKRYVLPATRNEATKAFAEFGPTVRSAVSMFPEKLEKWAVFDMLEAPVPTFAKGRVCLAGDAAHASTPNQGGGAGFGIEDALVLAEVLAVLAEAPNVSGIVASEALAVYSEVRYERSQWLVRSSRRTGELCTWKDRDWGLAAEELSRDIISRSHQLWDHDTAGMVSDALAILGERVRGADTAF
|
| 227 |
+
>seq_cd6452ef8bc6b797bc199fff
|
| 228 |
+
MTTLFDPIKLGDLQLPNRIIMAPLTRCRADEGRVPNALMAEYYVQRASAGLILSEATSVSPMGVGYPDTPGIWNDEQVRGWNNVTKAVHAAGGRIFLQLWHVGRISHPSYLNGELPVAPSAIQPKGHVSLVRPLSDYPTPRALETEEINDIVEAYRSGAENAKAAGFDGVEIHGANGYLLDQFLQSSTNQRTDRYGGSLENRARLLLEVTDAAIEVWGAQRVGVHLAPRADAHDMGDADRAETFTYVARELGKRGIAFICSREREADDSIGPLIKEAFGGPYIVNERFDKASANAALASGKADAVAFGVPFIANPDLPARLAADAPLNEAHPETFYGKGPVGYIDYPRL
|
| 229 |
+
>seq_d7b40929f9f603e01e0525ae
|
| 230 |
+
MVLSEGEWQLVLHVWAKVEADVAGHGQDILIRLFKSHPETLEKVDRFKHLKTEAEMKASEDLKKAGVTFLTALGAILKKKGHHEAELKPLAQSHATKHKIPIKYLEFISEAIIHVLHSRHPGNFGADAQGAMNKALELFRKDIAAKYKELGYQG
|
| 231 |
+
>seq_da791aa33d942a68723aae85
|
| 232 |
+
MTESGTAAQDPEALAAEIGPVKQVSLGEQIDAALAQQGEQLFNTYCTACHRLDERFIGPALRDVTKRRGPVYIMNRMLNPNGMIQRHPVMKQLVQEYGTQMYDVALSEEQARAILEYLRQVAENQLE
|
| 233 |
+
>seq_dae01849303cb2e536130cde
|
| 234 |
+
MILKRAYDVTPQKISTDKVRGVRKRVLIGLKDAPNFVMRLFTVEPGGLIDRGSHPWEHEIFVLKGKLTVLKEQGEETVEEGFYIFVEPNEIHGFRNDTDSEVEFLCLIPKEGGE
|
| 235 |
+
>seq_db04c9b986fa2fbe69957b03
|
| 236 |
+
MSTTQTPDLDAIVIGAGFGGIYMLHKLRNDLGLSVRVFEKGGGVGGTWYWNKYPGAKSDTEGFVYRYSFDKELLREYDWTTRYLDQPDVLAYLEHVVERYDLARDIQLNTEVTDAIFDEETELWRVTTAGGETLTARFLVTALGLGSRSNIPDIPGRDSFAGRLVHTNAWPEDLDITGKRVGVIGTGSTGTQFIVAAAKMAEQLTVFQRTPQYCVPSGNGPMDPDEVARIKQNFDSIWDQVRSSTVAFGFEESTVEAMSVSESERQRVFQQAWDKGNGFRFMFGTFCDIATNPEANAAAAAFIRSKIAEIVKDPETARKLTPTDLYAKRPLCNEGYYETYNRDNVSLVSLKETPIEEIVPQGVRTSDGVVHELDVLVFATGFDAVDGNYRAMNLRGRDGRHINEHWTEGPTSYLGVTKAGFPNMFMILGPNGPFTNTPPSIEAQVEWISDLIDKATREGLTTVEPTADAEREWTETCAEIANMTLFPKADSWIFGANIPGKRHAVMFYLGGLGNYRRQLADVADGGYRGFQLRGERAQAVA
|
| 237 |
+
>seq_dd92f9218d455689ed2139f1
|
| 238 |
+
MWFGEFGGQYVPETLVGPLKELEKAYKRFKDDEEFNRQLNYYLKTWAGRPTPLYYAKRLTEKIGGAKVYLKREDLVHGGAHKTNNAIGQALLAKLMGKTRLIAGTGAGQHGVATAMAGALLGMKVDIYMGAEDVERQKLNVYRMKLLGANVIPVNSGSRTVKDAFDEALCDRVATFEYTHYLIGTVWGPHPYPTIVRDFQTVIGREAKAQILEAEGQLPDAIVACVGGGSNAMGIFYPFVNDKKVKLVGVEAGGKGLESGKHSASLNAGQVGVSHGMLSYFLQDEEGQIKPSHSIAPGLDHPGVGPEHAYLKKIQRAEYVAVTDEEALKAFHELSRTEGIIPALESAHAVAYAMKLAKEMSRDEIIIVNLSGRGDKDLDIVLKASGNV
|
| 239 |
+
>seq_df809ac8b79c00d84a357d5a
|
| 240 |
+
MTQKMDFDAIIIGAGFGGLYSLKKLRDDLNLKVRAFDRATEVGGTWFWNQYPGALSDSETHLYCYSWDKELLQEMEIKRKYISQPDVLAYLKRVADKHDLRKDIQFETGIRSAYFDEENSFWNVTTENDEKFTARFLITALGPLSAPNLPKIKGIETFKGELHHTSRWPKDVTFSGKRVGVIGTGSTGVQVITAIASQVKHLTVFQRSAQYSVPIGNVVMSETDVAKIKENYDQIWENVWNSALGYGLNESTLPTMSVSAEERDKIFEEAWQEGGGFRFMFETFGDIAVDETANIEAQNFIKKKISEIVKDPFVAKKLTPTDLYACKPLCDSGYYEIFNRDNVSLEDVKANPIVEIKEDCVVTADGVEHKLDMLICATGFDAVDGSYKRIDIRGKDGISIKDHWKDGPNSYLGMMVSNFPNMFMVFGPNTPLANSPPIIETQVEWIADLIGYAEDHQINQIEATKDAVDNWTNTCSDIANKTLFAKAKCEIFGANVPGKKNTVYLYMGGLKEYRNQISEVSNNNYKGCLLKQ
|
| 241 |
+
>seq_e3b2fb50c62eeddda2f947f6
|
| 242 |
+
MASMTGGQQMGRDEAGITGTWYNQLGSTFIVTAGADGALTGTYESAVGNAESRYVLTGRYDSAPATDGSGTALGWTVAWKNNYRNAHSATTWSGQYVGGAEARINTQWLLTAGTTEALFWQSTLVGHDTFTKVKPSAASIDAAKKAGVNNGNPLDAVQQ
|
| 243 |
+
>seq_e404740193328ae5ef5cebc2
|
| 244 |
+
MTPSDIPGYDYGRVEKSPITDLEFDLLKKTVMLGEKDVMYLKKAGDVLKDQVDEILDLLAVWRASNEHLIYYFSNPDTGEPIKEYLERVRARFGAWILDTTSRDYNREWLDYQYEVGLRHHRSKKGVTDGVRTVPHIPLRYLIAQIYPLTATIKPFLAKKGGSPEDIEGMYNAWLKSVVLQVAIWSHPYTKENDW
|
| 245 |
+
>seq_e7b80c7861adc0143f8aead0
|
| 246 |
+
MKWVTFISLLFLFSSAYSRGVFRRDAHKSEVAHRFKDLGEENFKALVLIAFAQYLQQCPFEDHVKLVNEVTEFAKTCVADESAENCDKSLHTLFGDKLCTVATLRETYGEMADCCAKQEPERNECFLQHKDDNPNLPRLVRPEVDVMCTAFHDNEETFLKKYLYEIARRHPYFYAPELLFFAKRYKAAFTECCQAADKAACLLPKLDELRDEGKASSAKQRLKCASLQKFGERAFKAWAVARLSQRFPKAEFAEVSKLVTDLTKVHTECCHGDLLECADDRADLAKYICENQDSISSKLKECCEKPLLEKSHCIAEVENDEMPADLPSLAADFVESKDVCKNYAEAKDVFLGMFLYEYARRHPDYSVVLLLRLAKTYETTLEKCCAAADPHECYAKVFDEFKPLVEEPQNLIKQNCELFEQLGEYKFQNALLVRYTKKVPQVSTPTLVEVSRNLGKVGSKCCKHPEAKRMPCAEDYLSVVLNQLCVLHEKTPVSDRVTKCCTESLVNRRPCFSALEVDETYVPKEFNAETFTFHADICTLSEKERQIKKQTALVELVKHKPKATKEQLKAVMDDFAAFVEKCCKADDKETCFAEEGKKLVAASQAALGL
|
| 247 |
+
>seq_e8665ea2e9d1861680877916
|
| 248 |
+
MVLSEGEWQLVLHVWAKVEADVAGHGQDITIRLFKSHPETLEKFDRFKHLKTEAEMKASEDLKKVGVTFLTALGAILKKKGHHEAELKPLAQSHATKHKIPIKYLEFISEAIIHVLHSRHPGNFGADAQGAMNKALELFRKDIAAKYKELGYQG
|
| 249 |
+
>seq_e8b6065e90d4b953c1210000
|
| 250 |
+
MPGKIDKILIVGGGTAGWMAASYLGKALQGTADITLLQAPDIPTLGVGEATIPNLQTAFFDFLGIPEDEWVRECNASYKVAIKFINWRTAGEGTSEARELDGGPDHFYHSFGLLKYHEQIPLSHYWFDRSYRGKTVEPFDYACYMEPVILDANRSPRRLDGSKVTNYAWHFDAHLVADFLRRFATEKLGVRHVEDRVEHVQRDANGNIESVRTATGRVFDADLFVDCSGFRGLLINKAMEEPFLDMSDHLLNDSAVATQVPHDDDANGVEPFTSAIAMKSGWTWKIPMLGRFGTGYVYSSRFATEDEAVREFCEMWHLDPETQPLNRIRFRVGRNRRAWVGNCVSIGTSSCFVEPLESTGIYFVYAALYQLVKHFPDKSLNPVLTARFNREIETMFDDTRDFIQAHFYFSPRTDTPFWRANKELRLADGMQEKIDMYRAGMAINAPASDDAQLYYGNFEEEFRNFWTNSSYYCVLAGLGLVPDAPSPRLAHMPQATESVDEVFGAVKDRQRNLLETLPSLHEFLRQQHGR
|
| 251 |
+
>seq_e97cc229f406329f1bfee259
|
| 252 |
+
MTPSDIPGYDYGRVEKSPITDLEFDLLKKTVMLGEKDVMYLKKACDVLKDQVDEILDLLQGWVASNEHLIYYFSNPDTGEPIKEYLERVRARFGAWILDTTCRDYNREWLDYQYEVGLRHHRSKKGVTDGVRTVPHIPLRYLIAFIYPITATIKPFLAKKGGSPEDIEGMYNAWFKSVVLQVAIWSHPYTKENDW
|
| 253 |
+
>seq_e9deb960088a58945012260c
|
| 254 |
+
MYDWFSEMRKKDPVYYDGNIWQVFSYRYTKEVLNNFSKFSSDLTGYHERLEDLRNGKIRFDIPTRYTMLTSDPPLHDELRSMSADIFSPQKLQTLETFIRETTRSLLDSIDPREDDIVKKLAVPLPIIVISKILGLPIEDKEKFKEWSDLVLFRLGKPGEIFELGKKYLELIGYVKDHLNSGTEVVSRVVNSNLSDIEKLGYIILLLFAGNEGTTNLISNSVIDFTRFNLWQRIREENLYLKAIEEALRYSPPAMFTVRKTKERVKLGDQTIEEGEYVRVWIASANRDEEVFHDGEKFIPDRNPNPHLSFGSGIHLGLGAPLARLEARIAIEEFSKRFRHIEILDTEKVPNEVLNGYKRLVVRLKSNE
|
| 255 |
+
>seq_eaf4bc7f7dbb8dd5faf5478a
|
| 256 |
+
MTIKEMPQPKTFGELKNLPLLNTDKPVQALMKIADELGEIFKFEAPGRVTRYLSSQRLIKEACDESRFDKNLSQALKFVRDFAGDGLGTSWTHEKNWKKAHNILLPSFSQQAMKGYHAMMVDIAVQLVQKWERLNADEHIEVPEDMTRLTLDTIGLCGFNYRFNSFYRDQPHPFITSMVRADDEHMNKLQRANPDDPAYDENKRQFQEDIKVMNDLVDKIIADRKASGEQSDDLLTHMLNGKDPETGEPLDDENIRYQIITFLIAGHETTSGLLSFALYFLVKNPHVLQKAAEEAARVLVDPVPSYKQVKQLKYVGMVLNEALRLWPTLPAFSLYAKEDTVLGGEYPLEKGDELMVLIPQLHRDKTIWGDDVEEFRPERFENPSAIPQHAFKPFGNGQRACIGQQFALHEATLVLGMMLKHFDFEDHTNYELDIKETLTLKPEGFVVKAKSKKIPLGGIPSPSTEQ
|
| 257 |
+
>seq_ebc3635504f18e21dd80bf5d
|
| 258 |
+
MASMTGGQQMGRDQAGITGTWYNQLGSTFIVTAGADGALTGTYESAVGNAESRYVLTGRYDSAPATDGSGTALGWTVAWKNNYRNAHSATTWSGQYVGGAEARINTQWLLTSGTTEANAWASTLVGHDTFTKVKPSAASIDAAKKAGVNNGNPLDAVQQ
|
| 259 |
+
>seq_f12977468c45bda3bd195b95
|
| 260 |
+
MSGKIDKILIVGGGTAGWMAASYLGKALQGTADITLLQAPDIPTLGVGEATIPNLQTAFFDFLGIPEDEWMRECNASYKVAIKFINWRTAGEGTSEARELDGGPDHFYHPLGLLKYHEQIPLSHYWFDRSYRGKTVEPFDYACYKEPVILDANRSPRRLDGSKVTNYAWHFDAHLVADFLRRFATEKLGVRHVEDRVEHVQRDANGNIESVRTATGRVFDADLFVDCSGFRGLLINKAMEEPFLDMSDHLLNDSAVATQVPHDDDANGVEPFTSAIAMKSGWTWKIPMLGRFGTGYVYSSRFATEDEAVREFCEMWHLDPETQPLNRIRFRVGRNRRAWVGNCVSIGTSSCFVEPLESTGIYFVYAALYQLVKHFPDKSFNPVLTARFNREIETMFDDTRDFIQAHFYFSPRTDTPFWRANKELRLADGMQEKIDMYRAGMAINAPAPDDAQLYWGNFEEEFRNFWNNSSYYCVLAGLGLVPDAPSPRLAHMPRATESVDEVFGAVKDQQRNLLETLPSLHEFLRQQHGR
|
| 261 |
+
>seq_f1ab5492799f42e46ea77e92
|
| 262 |
+
TIKEMPQPKTFGELKNLPLLNTDKPVQALMKIADELGEIFKFEAPGRVTRYLSSQRLIKEACDESRFDKSLSQMLKFLRDFLGDGLATSWTHEKNWKKAHNILLPSFSQQAMKGYHAMMVDIAVQLVQKWERLNADEHIEVSEDMTRLTLDTIGLCGFNYRFNSFYRDQPHPFIISMVRALDEVMNKLQRANPDDPAYDENKRQFQEDIKVVNDLVDKIIADRKAGGEQSDDLLTQMLNGKDPETGEPLDDVNIRYQIITFLVAGHEGTSGLLSFALYFLVKNPHVLQKVAEEAARVLVDPVPSYKQVKQLKYVGMVLNEALRLWPTTPAFSLYAKEDTVLGGEYPLEKGDEVMVLIPQLHRDKTVWGDDVEEFRPERFENPSAIPQHAFKPFGNGQRAALGQQFALHEATLVLGMMLKHFDFEDHTNYELDIKETLGLKPKGFVVKAKSKKIPLGGIPSPSTEQSAKKVRKKAENAHNTPLLVLYGSNMGTAEGTARDLADIAMSKGFAPQVATLDSHAGNLPREGAVLIVTASYNGHPPDNAKQFVDWLDQASADEVKGVRYSVFGCGDKTWATTYQKVPAFIDETLAAKGAENIADRGEADASDDFEGTYEEWREHMWSDVAAYFNLDIENSEDNKETLSLQFVDSAADMPLAKMHGAFSTNVVASKELQQPGSARSTRHLEIELPKEASYQEGDHLGVIPRNYEG
|
| 263 |
+
>seq_f3d8cf013b22974a4879a899
|
| 264 |
+
MTIKEMPQPKTFGELKNLPLLNTDKPVQALMKIADELGEIFKFEAPGRVTRYLSSQRLIKEACDESRFDKNLSQALKFARDFTGDGLVTSWTHEKNWKKAHNILLPSFSQQAMKGYHAMMVDIAVQLVQKWERLNADEHIEVSEDMTRLTLDTIGLCGFNYRFNSFYRDQPHPFIISMVRAFDEVMNKLQRANPDDPAYDENKRQFQEDIKVMNDLVDKIIADRKARGEQSDDLLTQMLNGKDPETGEPLDDGNIRYQIITFLAAGTEATSGLLSFALYFLVKNPHVLQKVAEEAARVLVDPVPSYKQVKQLKYVGMVLNEALRLWPIAPAFSLYAKEDTVLGGEYPLEKGDEVMVLIPQLHRDKTVWGDDVEEFRPERFENPSAIPQHAFKPFGNGQRASIGQQFALHEATLVLGMMLKHFDFEDHTNYELDIKETLTLKPKGFVVKAKSKKIPLGGIPSPSTHHHHHH
|
| 265 |
+
>seq_f5492ac1089936805bdbc95a
|
| 266 |
+
MTDLKASSLRALKLMDLSTLNGDYTDEKVIALCHQAKTPVGNTAAISIYPRSIPIARKTLKEQGTPEIRIATVTNFPHGNDDIEIALAETRAAIAYGADEVDVVFPYRALMAGNEQVGFDLVKACKEACAAANVLLKVIIESGELKDEALIRKASEISIKAGADFIKTSTGLVAVNATPESARIMMEVIRDMGVEKSVGFKVTGGARTAEDAQKYLAIADELFGADWADARHYRFGASGLLASLLKALGHGDGKSASSYLEHHHHHH
|
| 267 |
+
>seq_f60c67db6ce1aa44b4a6cd57
|
| 268 |
+
VLSEGEWQLVLHVWAKVEADVAGHGQDILIRLFKSHPETLEKFDRFKHLKTEAEMKASEDLKKVGVTALTALGAILKKKGHHEAELKPLAQSHATKHKIPIKYLEFISEAIIHVLHSRHPGDFGADAQGAMNKALELFRKDIAAKYKELGYQG
|
| 269 |
+
>seq_f6f3a46fd07322ce8b3ca6dc
|
| 270 |
+
VLSEGEWQLVLHVWAKVEADVAGHGQEVSIRLFKGHPETLEKFKDKFKHLKSEDEMKASEDLKKVGATFLTALGGILKKKGHHEAEIKPLAQSHATKHKIPIKYLEFISEAIIHVLHSRHPGDFGADAQGAMNKALELFRKDIAAKYKELGYQG
|
| 271 |
+
>seq_fbedff276629f842fbd40a33
|
| 272 |
+
MPRYLKGWLEDVVQLSLRRPSVHASRQRPIISLNERILEFNKRNITAIIAYYLRKSPSGLDVERDPIEYAKYMERYAVGLSIKTEEKYFNGSYEMLRKIASSVSIPILMNDFIVKESQIDDAYNLGADTVLLIVNILTERELESLLEYARSYGMEPLILINDENDLDIALRIGARFIVIFSMNFETGEINKENQRKLISMIPSNVVKVAHLDISERNEIEELRKLGVNAFLISSSLMRNPEKIKELIEGSLEHHHHHH
|
| 273 |
+
>seq_fe026b8204820ec918b95f46
|
| 274 |
+
MVLSEGEWQLVLHVWAKVEADVAGHGQDILIRLFKSHPETLEKFDRFKHLKTEAEMKASEDLKKHGVTVLTALGAILKKKGHHEAELKPLAQSHATKHKIPIKYLEFISEAIIHVLHSRHPGDFGADAQGAMNKALELFRKDIAAKYKELGYQG
|
data/enzengdb-v1/rank-split/rank_split.json
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
data/enzengdb-v1/ranker-three-seed-summary.json
ADDED
|
@@ -0,0 +1,75 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"bootstrap_samples": 10000,
|
| 3 |
+
"bootstrap_seed": 42,
|
| 4 |
+
"campaign_count": 51,
|
| 5 |
+
"claim_boundary": "Seed variation and campaign-bootstrap uncertainty for within-campaign ranking. Intervals do not convert heterogeneous fitness endpoints into absolute activity.",
|
| 6 |
+
"inputs": [
|
| 7 |
+
"<redacted-local-path>",
|
| 8 |
+
"<redacted-local-path>",
|
| 9 |
+
"<redacted-local-path>"
|
| 10 |
+
],
|
| 11 |
+
"metrics": {
|
| 12 |
+
"pairwise_accuracy": {
|
| 13 |
+
"campaign_bootstrap_95pct_ci": [
|
| 14 |
+
0.4807993153691125,
|
| 15 |
+
0.5013751390374668
|
| 16 |
+
],
|
| 17 |
+
"campaign_bootstrap_mean": 0.49098696560871774,
|
| 18 |
+
"seed_mean": 0.49098696560871774,
|
| 19 |
+
"seed_sample_stddev": 0.02752319400205963,
|
| 20 |
+
"seed_values": [
|
| 21 |
+
0.5223166145781349,
|
| 22 |
+
0.4799444814040872,
|
| 23 |
+
0.47069980084393104
|
| 24 |
+
]
|
| 25 |
+
},
|
| 26 |
+
"spearman": {
|
| 27 |
+
"campaign_bootstrap_95pct_ci": [
|
| 28 |
+
-0.05492446669971046,
|
| 29 |
+
0.0032773043118798223
|
| 30 |
+
],
|
| 31 |
+
"campaign_bootstrap_mean": -0.025621578229325006,
|
| 32 |
+
"seed_mean": -0.025621578229325027,
|
| 33 |
+
"seed_sample_stddev": 0.07952852106573736,
|
| 34 |
+
"seed_values": [
|
| 35 |
+
0.06474127886905051,
|
| 36 |
+
-0.05663610148245918,
|
| 37 |
+
-0.08496991207456642
|
| 38 |
+
]
|
| 39 |
+
},
|
| 40 |
+
"top_10pct_enrichment": {
|
| 41 |
+
"campaign_bootstrap_95pct_ci": [
|
| 42 |
+
0.444261425062811,
|
| 43 |
+
0.7585167136914959
|
| 44 |
+
],
|
| 45 |
+
"campaign_bootstrap_mean": 0.5973088982999712,
|
| 46 |
+
"seed_mean": 0.5973088982999714,
|
| 47 |
+
"seed_sample_stddev": 0.1362684892184471,
|
| 48 |
+
"seed_values": [
|
| 49 |
+
0.446463163380901,
|
| 50 |
+
0.6339596837104059,
|
| 51 |
+
0.7115038478086072
|
| 52 |
+
]
|
| 53 |
+
},
|
| 54 |
+
"top_10pct_recall": {
|
| 55 |
+
"campaign_bootstrap_95pct_ci": [
|
| 56 |
+
0.049071591054722544,
|
| 57 |
+
0.08448765126965818
|
| 58 |
+
],
|
| 59 |
+
"campaign_bootstrap_mean": 0.06649803875798685,
|
| 60 |
+
"seed_mean": 0.06649803875798686,
|
| 61 |
+
"seed_sample_stddev": 0.015688976464473224,
|
| 62 |
+
"seed_values": [
|
| 63 |
+
0.04854206715365885,
|
| 64 |
+
0.07339484813533258,
|
| 65 |
+
0.07755720098496915
|
| 66 |
+
]
|
| 67 |
+
}
|
| 68 |
+
},
|
| 69 |
+
"run_count": 3,
|
| 70 |
+
"selection_identity": {
|
| 71 |
+
"row_count": 6423,
|
| 72 |
+
"sha256": "8e76932fc76b884ea8cf127934683b43b9e896b057b817488a9dc5533cf1fc4b",
|
| 73 |
+
"size_bytes": 167712
|
| 74 |
+
}
|
| 75 |
+
}
|
data/enzengdb-v1/selection-homology-cold.json
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
data/enzengdb-v1/selection.json
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
data/enzengdb-v1/zero-shot-kcat-proxy.json
ADDED
|
@@ -0,0 +1,538 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
| 1 |
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{
|
| 2 |
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| 3 |
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| 4 |
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| 5 |
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| 6 |
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| 7 |
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| 8 |
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| 9 |
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| 10 |
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| 11 |
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| 12 |
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| 13 |
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|
| 14 |
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|
| 15 |
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| 16 |
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| 17 |
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| 19 |
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| 20 |
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| 21 |
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| 22 |
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| 23 |
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| 24 |
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| 25 |
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| 26 |
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| 27 |
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| 28 |
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| 29 |
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| 30 |
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| 31 |
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| 32 |
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| 33 |
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| 34 |
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| 35 |
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| 36 |
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| 41 |
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| 42 |
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| 43 |
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| 44 |
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| 45 |
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| 46 |
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| 52 |
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| 53 |
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| 54 |
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| 55 |
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| 56 |
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| 62 |
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| 63 |
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| 72 |
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| 74 |
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| 75 |
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| 122 |
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| 123 |
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| 492 |
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},
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| 493 |
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|
| 494 |
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"count": 21,
|
| 495 |
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| 496 |
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| 497 |
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"spearman": -0.3558472169426273,
|
| 498 |
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"top_10pct_count": 3,
|
| 499 |
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"top_10pct_enrichment": 0.0,
|
| 500 |
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"top_10pct_overlap": 0.0,
|
| 501 |
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"top_10pct_recall": 0.0
|
| 502 |
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},
|
| 503 |
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"exp_LLM97": {
|
| 504 |
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"count": 20,
|
| 505 |
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"pairwise_accuracy": 0.5132978723404256,
|
| 506 |
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"pairwise_comparisons": 188,
|
| 507 |
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"spearman": -0.01243875653921537,
|
| 508 |
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"top_10pct_count": 2,
|
| 509 |
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"top_10pct_enrichment": 0.0,
|
| 510 |
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"top_10pct_overlap": 0.0,
|
| 511 |
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"top_10pct_recall": 0.0
|
| 512 |
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}
|
| 513 |
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},
|
| 514 |
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"campaigns": 51,
|
| 515 |
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"checkpoint": "<redacted-local-path>",
|
| 516 |
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"claim_boundary": "Zero-shot cross-endpoint campaign ranking. The checkpoint was trained on kcat, not EnzEngDB fitness; this is not external kcat validation or activity-head validation.",
|
| 517 |
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"dataset": "EnzEngDB v1",
|
| 518 |
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"dataset_doi": "10.5281/zenodo.17310823",
|
| 519 |
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"license": "CC-BY-4.0",
|
| 520 |
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"macro_metrics": {
|
| 521 |
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"pairwise_accuracy": 0.5247394695564409,
|
| 522 |
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|
| 523 |
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|
| 524 |
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"top_10pct_recall": 0.06394511726259132
|
| 525 |
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},
|
| 526 |
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|
| 527 |
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"pairwise_accuracy": 0.5,
|
| 528 |
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"spearman": 0.0,
|
| 529 |
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"top_10pct_enrichment": 1.0
|
| 530 |
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},
|
| 531 |
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"records": 6423,
|
| 532 |
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"selection_identity": {
|
| 533 |
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"row_count": 6423,
|
| 534 |
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"sha256": "8e76932fc76b884ea8cf127934683b43b9e896b057b817488a9dc5533cf1fc4b",
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| 535 |
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"size_bytes": 167712
|
| 536 |
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},
|
| 537 |
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"task_used_as_proxy": "log10_kcat"
|
| 538 |
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}
|
data/full-homology-baseline/test_metrics.json
ADDED
|
@@ -0,0 +1,53 @@
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|
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|
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|
|
|
|
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|
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|
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|
|
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|
|
|
|
|
|
|
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|
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|
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|
|
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|
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|
|
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|
|
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|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
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|
|
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|
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|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"checkpoint": "<redacted-local-path>",
|
| 3 |
+
"claim_boundary": "Internal homology-cold development evaluation; not external validation.",
|
| 4 |
+
"mean_baseline": {
|
| 5 |
+
"log10_activity": {
|
| 6 |
+
"count": 0
|
| 7 |
+
},
|
| 8 |
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"log10_flux": {
|
| 9 |
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"count": 0
|
| 10 |
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},
|
| 11 |
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"log10_kcat": {
|
| 12 |
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"count": 1646,
|
| 13 |
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"mae": 1.1794756650924683,
|
| 14 |
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"pearson": 6.098917815222649e-09,
|
| 15 |
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"rmse": 1.5100704431533813
|
| 16 |
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},
|
| 17 |
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"log10_km": {
|
| 18 |
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"count": 0
|
| 19 |
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}
|
| 20 |
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},
|
| 21 |
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"model_metrics": {
|
| 22 |
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"log10_activity": {
|
| 23 |
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"count": 0
|
| 24 |
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},
|
| 25 |
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"log10_flux": {
|
| 26 |
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"count": 0
|
| 27 |
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},
|
| 28 |
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"log10_kcat": {
|
| 29 |
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"count": 1646,
|
| 30 |
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"coverage_1sigma": 0.6658565998077393,
|
| 31 |
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"coverage_2sigma": 0.9228432774543762,
|
| 32 |
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"mae": 1.1221579313278198,
|
| 33 |
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"pearson": 0.2730654776096344,
|
| 34 |
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"rmse": 1.4637625217437744
|
| 35 |
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},
|
| 36 |
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"log10_km": {
|
| 37 |
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"count": 0
|
| 38 |
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}
|
| 39 |
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},
|
| 40 |
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"model_parameters": 536520,
|
| 41 |
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"partition": "test",
|
| 42 |
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"record_count": 1646,
|
| 43 |
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"source_identity": {
|
| 44 |
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"row_count": 17010,
|
| 45 |
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"sha256": "13643b0b36374f8d3f64d8b014882cf1b3b58946eeaae2b9dcd59e8b2c2d6719",
|
| 46 |
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"size_bytes": 12132719
|
| 47 |
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},
|
| 48 |
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"split_identity": {
|
| 49 |
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"row_count": 16838,
|
| 50 |
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"sha256": "ae1793afea078b4a2d8b834e9b9cd7c836d43508e26185ed87d26b8b82f96300",
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| 51 |
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"size_bytes": 2875660
|
| 52 |
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}
|
| 53 |
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}
|
data/homology_split.json
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
data/homology_split.parquet
ADDED
|
@@ -0,0 +1,3 @@
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|
|
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|
|
|
|
|
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|
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|
| 1 |
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version https://git-lfs.github.com/spec/v1
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| 2 |
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oid sha256:367934d191d35844a84c72ca9908a69dda231259ba9cfc2659926b4a8186c9a3
|
| 3 |
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size 392319
|
data/lunzer-imdh/biocandidate-full-evaluation.json
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
data/lunzer-imdh/dlkcat-evaluation.json
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
data/lunzer-imdh/homology-audit.json
ADDED
|
@@ -0,0 +1,20 @@
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|
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|
|
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|
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|
| 1 |
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{
|
| 2 |
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"best_hit_identity_range": [
|
| 3 |
+
0.677,
|
| 4 |
+
0.694
|
| 5 |
+
],
|
| 6 |
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"claim_boundary": "The benchmark is not homology-cold; homology results are post-freeze leakage characterization and were not used for model selection.",
|
| 7 |
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"coverage": 0.8,
|
| 8 |
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"coverage_mode": 0,
|
| 9 |
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"hits_identity": {
|
| 10 |
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"row_count": 512,
|
| 11 |
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"sha256": "3b2045a4e8913f60ffeebecacea80f1c4707df8c51c3e135675bd645a31dfbaa",
|
| 12 |
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"size_bytes": 46592
|
| 13 |
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},
|
| 14 |
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"method": "MMseqs2 easy-search",
|
| 15 |
+
"min_identity": 0.3,
|
| 16 |
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"mmseqs_version": "5d152c612b6ad2a56f657b7a02c127eceaea2a75",
|
| 17 |
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"records_with_hit": 1024,
|
| 18 |
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"unique_sequences_with_hit": 512,
|
| 19 |
+
"unique_variant_sequences": 512
|
| 20 |
+
}
|
data/lunzer-imdh/selection.json
ADDED
|
@@ -0,0 +1,1069 @@
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|
| 1 |
+
{
|
| 2 |
+
"article_doi": "10.1126/science.1115649",
|
| 3 |
+
"candidate_ids": [
|
| 4 |
+
"lunzer-DDFAGR-nad",
|
| 5 |
+
"lunzer-DDFAGR-nadp",
|
| 6 |
+
"lunzer-DDFAGS-nad",
|
| 7 |
+
"lunzer-DDFAGS-nadp",
|
| 8 |
+
"lunzer-DDFAYR-nad",
|
| 9 |
+
"lunzer-DDFAYR-nadp",
|
| 10 |
+
"lunzer-DDFAYS-nad",
|
| 11 |
+
"lunzer-DDFAYS-nadp",
|
| 12 |
+
"lunzer-DDFVGR-nad",
|
| 13 |
+
"lunzer-DDFVGR-nadp",
|
| 14 |
+
"lunzer-DDFVGS-nad",
|
| 15 |
+
"lunzer-DDFVGS-nadp",
|
| 16 |
+
"lunzer-DDFVYR-nad",
|
| 17 |
+
"lunzer-DDFVYR-nadp",
|
| 18 |
+
"lunzer-DDFVYS-nad",
|
| 19 |
+
"lunzer-DDFVYS-nadp",
|
| 20 |
+
"lunzer-DDHAGR-nad",
|
| 21 |
+
"lunzer-DDHAGR-nadp",
|
| 22 |
+
"lunzer-DDHAGS-nad",
|
| 23 |
+
"lunzer-DDHAGS-nadp",
|
| 24 |
+
"lunzer-DDHAYR-nad",
|
| 25 |
+
"lunzer-DDHAYR-nadp",
|
| 26 |
+
"lunzer-DDHAYS-nad",
|
| 27 |
+
"lunzer-DDHAYS-nadp",
|
| 28 |
+
"lunzer-DDHVGR-nad",
|
| 29 |
+
"lunzer-DDHVGR-nadp",
|
| 30 |
+
"lunzer-DDHVGS-nad",
|
| 31 |
+
"lunzer-DDHVGS-nadp",
|
| 32 |
+
"lunzer-DDHVYR-nad",
|
| 33 |
+
"lunzer-DDHVYR-nadp",
|
| 34 |
+
"lunzer-DDHVYS-nad",
|
| 35 |
+
"lunzer-DDHVYS-nadp",
|
| 36 |
+
"lunzer-DDIAGR-nad",
|
| 37 |
+
"lunzer-DDIAGR-nadp",
|
| 38 |
+
"lunzer-DDIAGS-nad",
|
| 39 |
+
"lunzer-DDIAGS-nadp",
|
| 40 |
+
"lunzer-DDIAYR-nad",
|
| 41 |
+
"lunzer-DDIAYR-nadp",
|
| 42 |
+
"lunzer-DDIAYS-nad",
|
| 43 |
+
"lunzer-DDIAYS-nadp",
|
| 44 |
+
"lunzer-DDIVGR-nad",
|
| 45 |
+
"lunzer-DDIVGR-nadp",
|
| 46 |
+
"lunzer-DDIVGS-nad",
|
| 47 |
+
"lunzer-DDIVGS-nadp",
|
| 48 |
+
"lunzer-DDIVYR-nad",
|
| 49 |
+
"lunzer-DDIVYR-nadp",
|
| 50 |
+
"lunzer-DDIVYS-nad",
|
| 51 |
+
"lunzer-DDIVYS-nadp",
|
| 52 |
+
"lunzer-DDKAGR-nad",
|
| 53 |
+
"lunzer-DDKAGR-nadp",
|
| 54 |
+
"lunzer-DDKAGS-nad",
|
| 55 |
+
"lunzer-DDKAGS-nadp",
|
| 56 |
+
"lunzer-DDKAYR-nad",
|
| 57 |
+
"lunzer-DDKAYR-nadp",
|
| 58 |
+
"lunzer-DDKAYS-nad",
|
| 59 |
+
"lunzer-DDKAYS-nadp",
|
| 60 |
+
"lunzer-DDKVGR-nad",
|
| 61 |
+
"lunzer-DDKVGR-nadp",
|
| 62 |
+
"lunzer-DDKVGS-nad",
|
| 63 |
+
"lunzer-DDKVGS-nadp",
|
| 64 |
+
"lunzer-DDKVYR-nad",
|
| 65 |
+
"lunzer-DDKVYR-nadp",
|
| 66 |
+
"lunzer-DDKVYS-nad",
|
| 67 |
+
"lunzer-DDKVYS-nadp",
|
| 68 |
+
"lunzer-DDLAGR-nad",
|
| 69 |
+
"lunzer-DDLAGR-nadp",
|
| 70 |
+
"lunzer-DDLAGS-nad",
|
| 71 |
+
"lunzer-DDLAGS-nadp",
|
| 72 |
+
"lunzer-DDLAYR-nad",
|
| 73 |
+
"lunzer-DDLAYR-nadp",
|
| 74 |
+
"lunzer-DDLAYS-nad",
|
| 75 |
+
"lunzer-DDLAYS-nadp",
|
| 76 |
+
"lunzer-DDLVGR-nad",
|
| 77 |
+
"lunzer-DDLVGR-nadp",
|
| 78 |
+
"lunzer-DDLVGS-nad",
|
| 79 |
+
"lunzer-DDLVGS-nadp",
|
| 80 |
+
"lunzer-DDLVYR-nad",
|
| 81 |
+
"lunzer-DDLVYR-nadp",
|
| 82 |
+
"lunzer-DDLVYS-nad",
|
| 83 |
+
"lunzer-DDLVYS-nadp",
|
| 84 |
+
"lunzer-DDNAGR-nad",
|
| 85 |
+
"lunzer-DDNAGR-nadp",
|
| 86 |
+
"lunzer-DDNAGS-nad",
|
| 87 |
+
"lunzer-DDNAGS-nadp",
|
| 88 |
+
"lunzer-DDNAYR-nad",
|
| 89 |
+
"lunzer-DDNAYR-nadp",
|
| 90 |
+
"lunzer-DDNAYS-nad",
|
| 91 |
+
"lunzer-DDNAYS-nadp",
|
| 92 |
+
"lunzer-DDNVGR-nad",
|
| 93 |
+
"lunzer-DDNVGR-nadp",
|
| 94 |
+
"lunzer-DDNVGS-nad",
|
| 95 |
+
"lunzer-DDNVGS-nadp",
|
| 96 |
+
"lunzer-DDNVYR-nad",
|
| 97 |
+
"lunzer-DDNVYR-nadp",
|
| 98 |
+
"lunzer-DDNVYS-nad",
|
| 99 |
+
"lunzer-DDNVYS-nadp",
|
| 100 |
+
"lunzer-DDQAGR-nad",
|
| 101 |
+
"lunzer-DDQAGR-nadp",
|
| 102 |
+
"lunzer-DDQAGS-nad",
|
| 103 |
+
"lunzer-DDQAGS-nadp",
|
| 104 |
+
"lunzer-DDQAYR-nad",
|
| 105 |
+
"lunzer-DDQAYR-nadp",
|
| 106 |
+
"lunzer-DDQAYS-nad",
|
| 107 |
+
"lunzer-DDQAYS-nadp",
|
| 108 |
+
"lunzer-DDQVGR-nad",
|
| 109 |
+
"lunzer-DDQVGR-nadp",
|
| 110 |
+
"lunzer-DDQVGS-nad",
|
| 111 |
+
"lunzer-DDQVGS-nadp",
|
| 112 |
+
"lunzer-DDQVYR-nad",
|
| 113 |
+
"lunzer-DDQVYR-nadp",
|
| 114 |
+
"lunzer-DDQVYS-nad",
|
| 115 |
+
"lunzer-DDQVYS-nadp",
|
| 116 |
+
"lunzer-DDYAGR-nad",
|
| 117 |
+
"lunzer-DDYAGR-nadp",
|
| 118 |
+
"lunzer-DDYAGS-nad",
|
| 119 |
+
"lunzer-DDYAGS-nadp",
|
| 120 |
+
"lunzer-DDYAYR-nad",
|
| 121 |
+
"lunzer-DDYAYR-nadp",
|
| 122 |
+
"lunzer-DDYAYS-nad",
|
| 123 |
+
"lunzer-DDYAYS-nadp",
|
| 124 |
+
"lunzer-DDYVGR-nad",
|
| 125 |
+
"lunzer-DDYVGR-nadp",
|
| 126 |
+
"lunzer-DDYVGS-nad",
|
| 127 |
+
"lunzer-DDYVGS-nadp",
|
| 128 |
+
"lunzer-DDYVYR-nad",
|
| 129 |
+
"lunzer-DDYVYR-nadp",
|
| 130 |
+
"lunzer-DDYVYS-nad",
|
| 131 |
+
"lunzer-DDYVYS-nadp",
|
| 132 |
+
"lunzer-DEFAGR-nad",
|
| 133 |
+
"lunzer-DEFAGR-nadp",
|
| 134 |
+
"lunzer-DEFAGS-nad",
|
| 135 |
+
"lunzer-DEFAGS-nadp",
|
| 136 |
+
"lunzer-DEFAYR-nad",
|
| 137 |
+
"lunzer-DEFAYR-nadp",
|
| 138 |
+
"lunzer-DEFAYS-nad",
|
| 139 |
+
"lunzer-DEFAYS-nadp",
|
| 140 |
+
"lunzer-DEFVGR-nad",
|
| 141 |
+
"lunzer-DEFVGR-nadp",
|
| 142 |
+
"lunzer-DEFVGS-nad",
|
| 143 |
+
"lunzer-DEFVGS-nadp",
|
| 144 |
+
"lunzer-DEFVYR-nad",
|
| 145 |
+
"lunzer-DEFVYR-nadp",
|
| 146 |
+
"lunzer-DEFVYS-nad",
|
| 147 |
+
"lunzer-DEFVYS-nadp",
|
| 148 |
+
"lunzer-DEHAGR-nad",
|
| 149 |
+
"lunzer-DEHAGR-nadp",
|
| 150 |
+
"lunzer-DEHAGS-nad",
|
| 151 |
+
"lunzer-DEHAGS-nadp",
|
| 152 |
+
"lunzer-DEHAYR-nad",
|
| 153 |
+
"lunzer-DEHAYR-nadp",
|
| 154 |
+
"lunzer-DEHAYS-nad",
|
| 155 |
+
"lunzer-DEHAYS-nadp",
|
| 156 |
+
"lunzer-DEHVGR-nad",
|
| 157 |
+
"lunzer-DEHVGR-nadp",
|
| 158 |
+
"lunzer-DEHVGS-nad",
|
| 159 |
+
"lunzer-DEHVGS-nadp",
|
| 160 |
+
"lunzer-DEHVYR-nad",
|
| 161 |
+
"lunzer-DEHVYR-nadp",
|
| 162 |
+
"lunzer-DEHVYS-nad",
|
| 163 |
+
"lunzer-DEHVYS-nadp",
|
| 164 |
+
"lunzer-DEIAGR-nad",
|
| 165 |
+
"lunzer-DEIAGR-nadp",
|
| 166 |
+
"lunzer-DEIAGS-nad",
|
| 167 |
+
"lunzer-DEIAGS-nadp",
|
| 168 |
+
"lunzer-DEIAYR-nad",
|
| 169 |
+
"lunzer-DEIAYR-nadp",
|
| 170 |
+
"lunzer-DEIAYS-nad",
|
| 171 |
+
"lunzer-DEIAYS-nadp",
|
| 172 |
+
"lunzer-DEIVGR-nad",
|
| 173 |
+
"lunzer-DEIVGR-nadp",
|
| 174 |
+
"lunzer-DEIVGS-nad",
|
| 175 |
+
"lunzer-DEIVGS-nadp",
|
| 176 |
+
"lunzer-DEIVYR-nad",
|
| 177 |
+
"lunzer-DEIVYR-nadp",
|
| 178 |
+
"lunzer-DEIVYS-nad",
|
| 179 |
+
"lunzer-DEIVYS-nadp",
|
| 180 |
+
"lunzer-DEKAGR-nad",
|
| 181 |
+
"lunzer-DEKAGR-nadp",
|
| 182 |
+
"lunzer-DEKAGS-nad",
|
| 183 |
+
"lunzer-DEKAGS-nadp",
|
| 184 |
+
"lunzer-DEKAYR-nad",
|
| 185 |
+
"lunzer-DEKAYR-nadp",
|
| 186 |
+
"lunzer-DEKAYS-nad",
|
| 187 |
+
"lunzer-DEKAYS-nadp",
|
| 188 |
+
"lunzer-DEKVGR-nad",
|
| 189 |
+
"lunzer-DEKVGR-nadp",
|
| 190 |
+
"lunzer-DEKVGS-nad",
|
| 191 |
+
"lunzer-DEKVGS-nadp",
|
| 192 |
+
"lunzer-DEKVYR-nad",
|
| 193 |
+
"lunzer-DEKVYR-nadp",
|
| 194 |
+
"lunzer-DEKVYS-nad",
|
| 195 |
+
"lunzer-DEKVYS-nadp",
|
| 196 |
+
"lunzer-DELAGR-nad",
|
| 197 |
+
"lunzer-DELAGR-nadp",
|
| 198 |
+
"lunzer-DELAGS-nad",
|
| 199 |
+
"lunzer-DELAGS-nadp",
|
| 200 |
+
"lunzer-DELAYR-nad",
|
| 201 |
+
"lunzer-DELAYR-nadp",
|
| 202 |
+
"lunzer-DELAYS-nad",
|
| 203 |
+
"lunzer-DELAYS-nadp",
|
| 204 |
+
"lunzer-DELVGR-nad",
|
| 205 |
+
"lunzer-DELVGR-nadp",
|
| 206 |
+
"lunzer-DELVGS-nad",
|
| 207 |
+
"lunzer-DELVGS-nadp",
|
| 208 |
+
"lunzer-DELVYR-nad",
|
| 209 |
+
"lunzer-DELVYR-nadp",
|
| 210 |
+
"lunzer-DELVYS-nad",
|
| 211 |
+
"lunzer-DELVYS-nadp",
|
| 212 |
+
"lunzer-DENAGR-nad",
|
| 213 |
+
"lunzer-DENAGR-nadp",
|
| 214 |
+
"lunzer-DENAGS-nad",
|
| 215 |
+
"lunzer-DENAGS-nadp",
|
| 216 |
+
"lunzer-DENAYR-nad",
|
| 217 |
+
"lunzer-DENAYR-nadp",
|
| 218 |
+
"lunzer-DENAYS-nad",
|
| 219 |
+
"lunzer-DENAYS-nadp",
|
| 220 |
+
"lunzer-DENVGR-nad",
|
| 221 |
+
"lunzer-DENVGR-nadp",
|
| 222 |
+
"lunzer-DENVGS-nad",
|
| 223 |
+
"lunzer-DENVGS-nadp",
|
| 224 |
+
"lunzer-DENVYR-nad",
|
| 225 |
+
"lunzer-DENVYR-nadp",
|
| 226 |
+
"lunzer-DENVYS-nad",
|
| 227 |
+
"lunzer-DENVYS-nadp",
|
| 228 |
+
"lunzer-DEQAGR-nad",
|
| 229 |
+
"lunzer-DEQAGR-nadp",
|
| 230 |
+
"lunzer-DEQAGS-nad",
|
| 231 |
+
"lunzer-DEQAGS-nadp",
|
| 232 |
+
"lunzer-DEQAYR-nad",
|
| 233 |
+
"lunzer-DEQAYR-nadp",
|
| 234 |
+
"lunzer-DEQAYS-nad",
|
| 235 |
+
"lunzer-DEQAYS-nadp",
|
| 236 |
+
"lunzer-DEQVGR-nad",
|
| 237 |
+
"lunzer-DEQVGR-nadp",
|
| 238 |
+
"lunzer-DEQVGS-nad",
|
| 239 |
+
"lunzer-DEQVGS-nadp",
|
| 240 |
+
"lunzer-DEQVYR-nad",
|
| 241 |
+
"lunzer-DEQVYR-nadp",
|
| 242 |
+
"lunzer-DEQVYS-nad",
|
| 243 |
+
"lunzer-DEQVYS-nadp",
|
| 244 |
+
"lunzer-DEYAGR-nad",
|
| 245 |
+
"lunzer-DEYAGR-nadp",
|
| 246 |
+
"lunzer-DEYAGS-nad",
|
| 247 |
+
"lunzer-DEYAGS-nadp",
|
| 248 |
+
"lunzer-DEYAYR-nad",
|
| 249 |
+
"lunzer-DEYAYR-nadp",
|
| 250 |
+
"lunzer-DEYAYS-nad",
|
| 251 |
+
"lunzer-DEYAYS-nadp",
|
| 252 |
+
"lunzer-DEYVGR-nad",
|
| 253 |
+
"lunzer-DEYVGR-nadp",
|
| 254 |
+
"lunzer-DEYVGS-nad",
|
| 255 |
+
"lunzer-DEYVGS-nadp",
|
| 256 |
+
"lunzer-DEYVYR-nad",
|
| 257 |
+
"lunzer-DEYVYR-nadp",
|
| 258 |
+
"lunzer-DEYVYS-nad",
|
| 259 |
+
"lunzer-DEYVYS-nadp",
|
| 260 |
+
"lunzer-DKFAGR-nad",
|
| 261 |
+
"lunzer-DKFAGR-nadp",
|
| 262 |
+
"lunzer-DKFAGS-nad",
|
| 263 |
+
"lunzer-DKFAGS-nadp",
|
| 264 |
+
"lunzer-DKFAYR-nad",
|
| 265 |
+
"lunzer-DKFAYR-nadp",
|
| 266 |
+
"lunzer-DKFAYS-nad",
|
| 267 |
+
"lunzer-DKFAYS-nadp",
|
| 268 |
+
"lunzer-DKFVGR-nad",
|
| 269 |
+
"lunzer-DKFVGR-nadp",
|
| 270 |
+
"lunzer-DKFVGS-nad",
|
| 271 |
+
"lunzer-DKFVGS-nadp",
|
| 272 |
+
"lunzer-DKFVYR-nad",
|
| 273 |
+
"lunzer-DKFVYR-nadp",
|
| 274 |
+
"lunzer-DKFVYS-nad",
|
| 275 |
+
"lunzer-DKFVYS-nadp",
|
| 276 |
+
"lunzer-DKHAGR-nad",
|
| 277 |
+
"lunzer-DKHAGR-nadp",
|
| 278 |
+
"lunzer-DKHAGS-nad",
|
| 279 |
+
"lunzer-DKHAGS-nadp",
|
| 280 |
+
"lunzer-DKHAYR-nad",
|
| 281 |
+
"lunzer-DKHAYR-nadp",
|
| 282 |
+
"lunzer-DKHAYS-nad",
|
| 283 |
+
"lunzer-DKHAYS-nadp",
|
| 284 |
+
"lunzer-DKHVGR-nad",
|
| 285 |
+
"lunzer-DKHVGR-nadp",
|
| 286 |
+
"lunzer-DKHVGS-nad",
|
| 287 |
+
"lunzer-DKHVGS-nadp",
|
| 288 |
+
"lunzer-DKHVYR-nad",
|
| 289 |
+
"lunzer-DKHVYR-nadp",
|
| 290 |
+
"lunzer-DKHVYS-nad",
|
| 291 |
+
"lunzer-DKHVYS-nadp",
|
| 292 |
+
"lunzer-DKIAGR-nad",
|
| 293 |
+
"lunzer-DKIAGR-nadp",
|
| 294 |
+
"lunzer-DKIAGS-nad",
|
| 295 |
+
"lunzer-DKIAGS-nadp",
|
| 296 |
+
"lunzer-DKIAYR-nad",
|
| 297 |
+
"lunzer-DKIAYR-nadp",
|
| 298 |
+
"lunzer-DKIAYS-nad",
|
| 299 |
+
"lunzer-DKIAYS-nadp",
|
| 300 |
+
"lunzer-DKIVGR-nad",
|
| 301 |
+
"lunzer-DKIVGR-nadp",
|
| 302 |
+
"lunzer-DKIVGS-nad",
|
| 303 |
+
"lunzer-DKIVGS-nadp",
|
| 304 |
+
"lunzer-DKIVYR-nad",
|
| 305 |
+
"lunzer-DKIVYR-nadp",
|
| 306 |
+
"lunzer-DKIVYS-nad",
|
| 307 |
+
"lunzer-DKIVYS-nadp",
|
| 308 |
+
"lunzer-DKKAGR-nad",
|
| 309 |
+
"lunzer-DKKAGR-nadp",
|
| 310 |
+
"lunzer-DKKAGS-nad",
|
| 311 |
+
"lunzer-DKKAGS-nadp",
|
| 312 |
+
"lunzer-DKKAYR-nad",
|
| 313 |
+
"lunzer-DKKAYR-nadp",
|
| 314 |
+
"lunzer-DKKAYS-nad",
|
| 315 |
+
"lunzer-DKKAYS-nadp",
|
| 316 |
+
"lunzer-DKKVGR-nad",
|
| 317 |
+
"lunzer-DKKVGR-nadp",
|
| 318 |
+
"lunzer-DKKVGS-nad",
|
| 319 |
+
"lunzer-DKKVGS-nadp",
|
| 320 |
+
"lunzer-DKKVYR-nad",
|
| 321 |
+
"lunzer-DKKVYR-nadp",
|
| 322 |
+
"lunzer-DKKVYS-nad",
|
| 323 |
+
"lunzer-DKKVYS-nadp",
|
| 324 |
+
"lunzer-DKLAGR-nad",
|
| 325 |
+
"lunzer-DKLAGR-nadp",
|
| 326 |
+
"lunzer-DKLAGS-nad",
|
| 327 |
+
"lunzer-DKLAGS-nadp",
|
| 328 |
+
"lunzer-DKLAYR-nad",
|
| 329 |
+
"lunzer-DKLAYR-nadp",
|
| 330 |
+
"lunzer-DKLAYS-nad",
|
| 331 |
+
"lunzer-DKLAYS-nadp",
|
| 332 |
+
"lunzer-DKLVGR-nad",
|
| 333 |
+
"lunzer-DKLVGR-nadp",
|
| 334 |
+
"lunzer-DKLVGS-nad",
|
| 335 |
+
"lunzer-DKLVGS-nadp",
|
| 336 |
+
"lunzer-DKLVYR-nad",
|
| 337 |
+
"lunzer-DKLVYR-nadp",
|
| 338 |
+
"lunzer-DKLVYS-nad",
|
| 339 |
+
"lunzer-DKLVYS-nadp",
|
| 340 |
+
"lunzer-DKNAGR-nad",
|
| 341 |
+
"lunzer-DKNAGR-nadp",
|
| 342 |
+
"lunzer-DKNAGS-nad",
|
| 343 |
+
"lunzer-DKNAGS-nadp",
|
| 344 |
+
"lunzer-DKNAYR-nad",
|
| 345 |
+
"lunzer-DKNAYR-nadp",
|
| 346 |
+
"lunzer-DKNAYS-nad",
|
| 347 |
+
"lunzer-DKNAYS-nadp",
|
| 348 |
+
"lunzer-DKNVGR-nad",
|
| 349 |
+
"lunzer-DKNVGR-nadp",
|
| 350 |
+
"lunzer-DKNVGS-nad",
|
| 351 |
+
"lunzer-DKNVGS-nadp",
|
| 352 |
+
"lunzer-DKNVYR-nad",
|
| 353 |
+
"lunzer-DKNVYR-nadp",
|
| 354 |
+
"lunzer-DKNVYS-nad",
|
| 355 |
+
"lunzer-DKNVYS-nadp",
|
| 356 |
+
"lunzer-DKQAGR-nad",
|
| 357 |
+
"lunzer-DKQAGR-nadp",
|
| 358 |
+
"lunzer-DKQAGS-nad",
|
| 359 |
+
"lunzer-DKQAGS-nadp",
|
| 360 |
+
"lunzer-DKQAYR-nad",
|
| 361 |
+
"lunzer-DKQAYR-nadp",
|
| 362 |
+
"lunzer-DKQAYS-nad",
|
| 363 |
+
"lunzer-DKQAYS-nadp",
|
| 364 |
+
"lunzer-DKQVGR-nad",
|
| 365 |
+
"lunzer-DKQVGR-nadp",
|
| 366 |
+
"lunzer-DKQVGS-nad",
|
| 367 |
+
"lunzer-DKQVGS-nadp",
|
| 368 |
+
"lunzer-DKQVYR-nad",
|
| 369 |
+
"lunzer-DKQVYR-nadp",
|
| 370 |
+
"lunzer-DKQVYS-nad",
|
| 371 |
+
"lunzer-DKQVYS-nadp",
|
| 372 |
+
"lunzer-DKYAGR-nad",
|
| 373 |
+
"lunzer-DKYAGR-nadp",
|
| 374 |
+
"lunzer-DKYAGS-nad",
|
| 375 |
+
"lunzer-DKYAGS-nadp",
|
| 376 |
+
"lunzer-DKYAYR-nad",
|
| 377 |
+
"lunzer-DKYAYR-nadp",
|
| 378 |
+
"lunzer-DKYAYS-nad",
|
| 379 |
+
"lunzer-DKYAYS-nadp",
|
| 380 |
+
"lunzer-DKYVGR-nad",
|
| 381 |
+
"lunzer-DKYVGR-nadp",
|
| 382 |
+
"lunzer-DKYVGS-nad",
|
| 383 |
+
"lunzer-DKYVGS-nadp",
|
| 384 |
+
"lunzer-DKYVYR-nad",
|
| 385 |
+
"lunzer-DKYVYR-nadp",
|
| 386 |
+
"lunzer-DKYVYS-nad",
|
| 387 |
+
"lunzer-DKYVYS-nadp",
|
| 388 |
+
"lunzer-DNFAGR-nad",
|
| 389 |
+
"lunzer-DNFAGR-nadp",
|
| 390 |
+
"lunzer-DNFAGS-nad",
|
| 391 |
+
"lunzer-DNFAGS-nadp",
|
| 392 |
+
"lunzer-DNFAYR-nad",
|
| 393 |
+
"lunzer-DNFAYR-nadp",
|
| 394 |
+
"lunzer-DNFAYS-nad",
|
| 395 |
+
"lunzer-DNFAYS-nadp",
|
| 396 |
+
"lunzer-DNFVGR-nad",
|
| 397 |
+
"lunzer-DNFVGR-nadp",
|
| 398 |
+
"lunzer-DNFVGS-nad",
|
| 399 |
+
"lunzer-DNFVGS-nadp",
|
| 400 |
+
"lunzer-DNFVYR-nad",
|
| 401 |
+
"lunzer-DNFVYR-nadp",
|
| 402 |
+
"lunzer-DNFVYS-nad",
|
| 403 |
+
"lunzer-DNFVYS-nadp",
|
| 404 |
+
"lunzer-DNHAGR-nad",
|
| 405 |
+
"lunzer-DNHAGR-nadp",
|
| 406 |
+
"lunzer-DNHAGS-nad",
|
| 407 |
+
"lunzer-DNHAGS-nadp",
|
| 408 |
+
"lunzer-DNHAYR-nad",
|
| 409 |
+
"lunzer-DNHAYR-nadp",
|
| 410 |
+
"lunzer-DNHAYS-nad",
|
| 411 |
+
"lunzer-DNHAYS-nadp",
|
| 412 |
+
"lunzer-DNHVGR-nad",
|
| 413 |
+
"lunzer-DNHVGR-nadp",
|
| 414 |
+
"lunzer-DNHVGS-nad",
|
| 415 |
+
"lunzer-DNHVGS-nadp",
|
| 416 |
+
"lunzer-DNHVYR-nad",
|
| 417 |
+
"lunzer-DNHVYR-nadp",
|
| 418 |
+
"lunzer-DNHVYS-nad",
|
| 419 |
+
"lunzer-DNHVYS-nadp",
|
| 420 |
+
"lunzer-DNIAGR-nad",
|
| 421 |
+
"lunzer-DNIAGR-nadp",
|
| 422 |
+
"lunzer-DNIAGS-nad",
|
| 423 |
+
"lunzer-DNIAGS-nadp",
|
| 424 |
+
"lunzer-DNIAYR-nad",
|
| 425 |
+
"lunzer-DNIAYR-nadp",
|
| 426 |
+
"lunzer-DNIAYS-nad",
|
| 427 |
+
"lunzer-DNIAYS-nadp",
|
| 428 |
+
"lunzer-DNIVGR-nad",
|
| 429 |
+
"lunzer-DNIVGR-nadp",
|
| 430 |
+
"lunzer-DNIVGS-nad",
|
| 431 |
+
"lunzer-DNIVGS-nadp",
|
| 432 |
+
"lunzer-DNIVYR-nad",
|
| 433 |
+
"lunzer-DNIVYR-nadp",
|
| 434 |
+
"lunzer-DNIVYS-nad",
|
| 435 |
+
"lunzer-DNIVYS-nadp",
|
| 436 |
+
"lunzer-DNKAGR-nad",
|
| 437 |
+
"lunzer-DNKAGR-nadp",
|
| 438 |
+
"lunzer-DNKAGS-nad",
|
| 439 |
+
"lunzer-DNKAGS-nadp",
|
| 440 |
+
"lunzer-DNKAYR-nad",
|
| 441 |
+
"lunzer-DNKAYR-nadp",
|
| 442 |
+
"lunzer-DNKAYS-nad",
|
| 443 |
+
"lunzer-DNKAYS-nadp",
|
| 444 |
+
"lunzer-DNKVGR-nad",
|
| 445 |
+
"lunzer-DNKVGR-nadp",
|
| 446 |
+
"lunzer-DNKVGS-nad",
|
| 447 |
+
"lunzer-DNKVGS-nadp",
|
| 448 |
+
"lunzer-DNKVYR-nad",
|
| 449 |
+
"lunzer-DNKVYR-nadp",
|
| 450 |
+
"lunzer-DNKVYS-nad",
|
| 451 |
+
"lunzer-DNKVYS-nadp",
|
| 452 |
+
"lunzer-DNLAGR-nad",
|
| 453 |
+
"lunzer-DNLAGR-nadp",
|
| 454 |
+
"lunzer-DNLAGS-nad",
|
| 455 |
+
"lunzer-DNLAGS-nadp",
|
| 456 |
+
"lunzer-DNLAYR-nad",
|
| 457 |
+
"lunzer-DNLAYR-nadp",
|
| 458 |
+
"lunzer-DNLAYS-nad",
|
| 459 |
+
"lunzer-DNLAYS-nadp",
|
| 460 |
+
"lunzer-DNLVGR-nad",
|
| 461 |
+
"lunzer-DNLVGR-nadp",
|
| 462 |
+
"lunzer-DNLVGS-nad",
|
| 463 |
+
"lunzer-DNLVGS-nadp",
|
| 464 |
+
"lunzer-DNLVYR-nad",
|
| 465 |
+
"lunzer-DNLVYR-nadp",
|
| 466 |
+
"lunzer-DNLVYS-nad",
|
| 467 |
+
"lunzer-DNLVYS-nadp",
|
| 468 |
+
"lunzer-DNNAGR-nad",
|
| 469 |
+
"lunzer-DNNAGR-nadp",
|
| 470 |
+
"lunzer-DNNAGS-nad",
|
| 471 |
+
"lunzer-DNNAGS-nadp",
|
| 472 |
+
"lunzer-DNNAYR-nad",
|
| 473 |
+
"lunzer-DNNAYR-nadp",
|
| 474 |
+
"lunzer-DNNAYS-nad",
|
| 475 |
+
"lunzer-DNNAYS-nadp",
|
| 476 |
+
"lunzer-DNNVGR-nad",
|
| 477 |
+
"lunzer-DNNVGR-nadp",
|
| 478 |
+
"lunzer-DNNVGS-nad",
|
| 479 |
+
"lunzer-DNNVGS-nadp",
|
| 480 |
+
"lunzer-DNNVYR-nad",
|
| 481 |
+
"lunzer-DNNVYR-nadp",
|
| 482 |
+
"lunzer-DNNVYS-nad",
|
| 483 |
+
"lunzer-DNNVYS-nadp",
|
| 484 |
+
"lunzer-DNQAGR-nad",
|
| 485 |
+
"lunzer-DNQAGR-nadp",
|
| 486 |
+
"lunzer-DNQAGS-nad",
|
| 487 |
+
"lunzer-DNQAGS-nadp",
|
| 488 |
+
"lunzer-DNQAYR-nad",
|
| 489 |
+
"lunzer-DNQAYR-nadp",
|
| 490 |
+
"lunzer-DNQAYS-nad",
|
| 491 |
+
"lunzer-DNQAYS-nadp",
|
| 492 |
+
"lunzer-DNQVGR-nad",
|
| 493 |
+
"lunzer-DNQVGR-nadp",
|
| 494 |
+
"lunzer-DNQVGS-nad",
|
| 495 |
+
"lunzer-DNQVGS-nadp",
|
| 496 |
+
"lunzer-DNQVYR-nad",
|
| 497 |
+
"lunzer-DNQVYR-nadp",
|
| 498 |
+
"lunzer-DNQVYS-nad",
|
| 499 |
+
"lunzer-DNQVYS-nadp",
|
| 500 |
+
"lunzer-DNYAGR-nad",
|
| 501 |
+
"lunzer-DNYAGR-nadp",
|
| 502 |
+
"lunzer-DNYAGS-nad",
|
| 503 |
+
"lunzer-DNYAGS-nadp",
|
| 504 |
+
"lunzer-DNYAYR-nad",
|
| 505 |
+
"lunzer-DNYAYR-nadp",
|
| 506 |
+
"lunzer-DNYAYS-nad",
|
| 507 |
+
"lunzer-DNYAYS-nadp",
|
| 508 |
+
"lunzer-DNYVGR-nad",
|
| 509 |
+
"lunzer-DNYVGR-nadp",
|
| 510 |
+
"lunzer-DNYVGS-nad",
|
| 511 |
+
"lunzer-DNYVGS-nadp",
|
| 512 |
+
"lunzer-DNYVYR-nad",
|
| 513 |
+
"lunzer-DNYVYR-nadp",
|
| 514 |
+
"lunzer-DNYVYS-nad",
|
| 515 |
+
"lunzer-DNYVYS-nadp",
|
| 516 |
+
"lunzer-RDFAGR-nad",
|
| 517 |
+
"lunzer-RDFAGR-nadp",
|
| 518 |
+
"lunzer-RDFAGS-nad",
|
| 519 |
+
"lunzer-RDFAGS-nadp",
|
| 520 |
+
"lunzer-RDFAYR-nad",
|
| 521 |
+
"lunzer-RDFAYR-nadp",
|
| 522 |
+
"lunzer-RDFAYS-nad",
|
| 523 |
+
"lunzer-RDFAYS-nadp",
|
| 524 |
+
"lunzer-RDFVGR-nad",
|
| 525 |
+
"lunzer-RDFVGR-nadp",
|
| 526 |
+
"lunzer-RDFVGS-nad",
|
| 527 |
+
"lunzer-RDFVGS-nadp",
|
| 528 |
+
"lunzer-RDFVYR-nad",
|
| 529 |
+
"lunzer-RDFVYR-nadp",
|
| 530 |
+
"lunzer-RDFVYS-nad",
|
| 531 |
+
"lunzer-RDFVYS-nadp",
|
| 532 |
+
"lunzer-RDHAGR-nad",
|
| 533 |
+
"lunzer-RDHAGR-nadp",
|
| 534 |
+
"lunzer-RDHAGS-nad",
|
| 535 |
+
"lunzer-RDHAGS-nadp",
|
| 536 |
+
"lunzer-RDHAYR-nad",
|
| 537 |
+
"lunzer-RDHAYR-nadp",
|
| 538 |
+
"lunzer-RDHAYS-nad",
|
| 539 |
+
"lunzer-RDHAYS-nadp",
|
| 540 |
+
"lunzer-RDHVGR-nad",
|
| 541 |
+
"lunzer-RDHVGR-nadp",
|
| 542 |
+
"lunzer-RDHVGS-nad",
|
| 543 |
+
"lunzer-RDHVGS-nadp",
|
| 544 |
+
"lunzer-RDHVYR-nad",
|
| 545 |
+
"lunzer-RDHVYR-nadp",
|
| 546 |
+
"lunzer-RDHVYS-nad",
|
| 547 |
+
"lunzer-RDHVYS-nadp",
|
| 548 |
+
"lunzer-RDIAGR-nad",
|
| 549 |
+
"lunzer-RDIAGR-nadp",
|
| 550 |
+
"lunzer-RDIAGS-nad",
|
| 551 |
+
"lunzer-RDIAGS-nadp",
|
| 552 |
+
"lunzer-RDIAYR-nad",
|
| 553 |
+
"lunzer-RDIAYR-nadp",
|
| 554 |
+
"lunzer-RDIAYS-nad",
|
| 555 |
+
"lunzer-RDIAYS-nadp",
|
| 556 |
+
"lunzer-RDIVGR-nad",
|
| 557 |
+
"lunzer-RDIVGR-nadp",
|
| 558 |
+
"lunzer-RDIVGS-nad",
|
| 559 |
+
"lunzer-RDIVGS-nadp",
|
| 560 |
+
"lunzer-RDIVYR-nad",
|
| 561 |
+
"lunzer-RDIVYR-nadp",
|
| 562 |
+
"lunzer-RDIVYS-nad",
|
| 563 |
+
"lunzer-RDIVYS-nadp",
|
| 564 |
+
"lunzer-RDKAGR-nad",
|
| 565 |
+
"lunzer-RDKAGR-nadp",
|
| 566 |
+
"lunzer-RDKAGS-nad",
|
| 567 |
+
"lunzer-RDKAGS-nadp",
|
| 568 |
+
"lunzer-RDKAYR-nad",
|
| 569 |
+
"lunzer-RDKAYR-nadp",
|
| 570 |
+
"lunzer-RDKAYS-nad",
|
| 571 |
+
"lunzer-RDKAYS-nadp",
|
| 572 |
+
"lunzer-RDKVGR-nad",
|
| 573 |
+
"lunzer-RDKVGR-nadp",
|
| 574 |
+
"lunzer-RDKVGS-nad",
|
| 575 |
+
"lunzer-RDKVGS-nadp",
|
| 576 |
+
"lunzer-RDKVYR-nad",
|
| 577 |
+
"lunzer-RDKVYR-nadp",
|
| 578 |
+
"lunzer-RDKVYS-nad",
|
| 579 |
+
"lunzer-RDKVYS-nadp",
|
| 580 |
+
"lunzer-RDLAGR-nad",
|
| 581 |
+
"lunzer-RDLAGR-nadp",
|
| 582 |
+
"lunzer-RDLAGS-nad",
|
| 583 |
+
"lunzer-RDLAGS-nadp",
|
| 584 |
+
"lunzer-RDLAYR-nad",
|
| 585 |
+
"lunzer-RDLAYR-nadp",
|
| 586 |
+
"lunzer-RDLAYS-nad",
|
| 587 |
+
"lunzer-RDLAYS-nadp",
|
| 588 |
+
"lunzer-RDLVGR-nad",
|
| 589 |
+
"lunzer-RDLVGR-nadp",
|
| 590 |
+
"lunzer-RDLVGS-nad",
|
| 591 |
+
"lunzer-RDLVGS-nadp",
|
| 592 |
+
"lunzer-RDLVYR-nad",
|
| 593 |
+
"lunzer-RDLVYR-nadp",
|
| 594 |
+
"lunzer-RDLVYS-nad",
|
| 595 |
+
"lunzer-RDLVYS-nadp",
|
| 596 |
+
"lunzer-RDNAGR-nad",
|
| 597 |
+
"lunzer-RDNAGR-nadp",
|
| 598 |
+
"lunzer-RDNAGS-nad",
|
| 599 |
+
"lunzer-RDNAGS-nadp",
|
| 600 |
+
"lunzer-RDNAYR-nad",
|
| 601 |
+
"lunzer-RDNAYR-nadp",
|
| 602 |
+
"lunzer-RDNAYS-nad",
|
| 603 |
+
"lunzer-RDNAYS-nadp",
|
| 604 |
+
"lunzer-RDNVGR-nad",
|
| 605 |
+
"lunzer-RDNVGR-nadp",
|
| 606 |
+
"lunzer-RDNVGS-nad",
|
| 607 |
+
"lunzer-RDNVGS-nadp",
|
| 608 |
+
"lunzer-RDNVYR-nad",
|
| 609 |
+
"lunzer-RDNVYR-nadp",
|
| 610 |
+
"lunzer-RDNVYS-nad",
|
| 611 |
+
"lunzer-RDNVYS-nadp",
|
| 612 |
+
"lunzer-RDQAGR-nad",
|
| 613 |
+
"lunzer-RDQAGR-nadp",
|
| 614 |
+
"lunzer-RDQAGS-nad",
|
| 615 |
+
"lunzer-RDQAGS-nadp",
|
| 616 |
+
"lunzer-RDQAYR-nad",
|
| 617 |
+
"lunzer-RDQAYR-nadp",
|
| 618 |
+
"lunzer-RDQAYS-nad",
|
| 619 |
+
"lunzer-RDQAYS-nadp",
|
| 620 |
+
"lunzer-RDQVGR-nad",
|
| 621 |
+
"lunzer-RDQVGR-nadp",
|
| 622 |
+
"lunzer-RDQVGS-nad",
|
| 623 |
+
"lunzer-RDQVGS-nadp",
|
| 624 |
+
"lunzer-RDQVYR-nad",
|
| 625 |
+
"lunzer-RDQVYR-nadp",
|
| 626 |
+
"lunzer-RDQVYS-nad",
|
| 627 |
+
"lunzer-RDQVYS-nadp",
|
| 628 |
+
"lunzer-RDYAGR-nad",
|
| 629 |
+
"lunzer-RDYAGR-nadp",
|
| 630 |
+
"lunzer-RDYAGS-nad",
|
| 631 |
+
"lunzer-RDYAGS-nadp",
|
| 632 |
+
"lunzer-RDYAYR-nad",
|
| 633 |
+
"lunzer-RDYAYR-nadp",
|
| 634 |
+
"lunzer-RDYAYS-nad",
|
| 635 |
+
"lunzer-RDYAYS-nadp",
|
| 636 |
+
"lunzer-RDYVGR-nad",
|
| 637 |
+
"lunzer-RDYVGR-nadp",
|
| 638 |
+
"lunzer-RDYVGS-nad",
|
| 639 |
+
"lunzer-RDYVGS-nadp",
|
| 640 |
+
"lunzer-RDYVYR-nad",
|
| 641 |
+
"lunzer-RDYVYR-nadp",
|
| 642 |
+
"lunzer-RDYVYS-nad",
|
| 643 |
+
"lunzer-RDYVYS-nadp",
|
| 644 |
+
"lunzer-REFAGR-nad",
|
| 645 |
+
"lunzer-REFAGR-nadp",
|
| 646 |
+
"lunzer-REFAGS-nad",
|
| 647 |
+
"lunzer-REFAGS-nadp",
|
| 648 |
+
"lunzer-REFAYR-nad",
|
| 649 |
+
"lunzer-REFAYR-nadp",
|
| 650 |
+
"lunzer-REFAYS-nad",
|
| 651 |
+
"lunzer-REFAYS-nadp",
|
| 652 |
+
"lunzer-REFVGR-nad",
|
| 653 |
+
"lunzer-REFVGR-nadp",
|
| 654 |
+
"lunzer-REFVGS-nad",
|
| 655 |
+
"lunzer-REFVGS-nadp",
|
| 656 |
+
"lunzer-REFVYR-nad",
|
| 657 |
+
"lunzer-REFVYR-nadp",
|
| 658 |
+
"lunzer-REFVYS-nad",
|
| 659 |
+
"lunzer-REFVYS-nadp",
|
| 660 |
+
"lunzer-REHAGR-nad",
|
| 661 |
+
"lunzer-REHAGR-nadp",
|
| 662 |
+
"lunzer-REHAGS-nad",
|
| 663 |
+
"lunzer-REHAGS-nadp",
|
| 664 |
+
"lunzer-REHAYR-nad",
|
| 665 |
+
"lunzer-REHAYR-nadp",
|
| 666 |
+
"lunzer-REHAYS-nad",
|
| 667 |
+
"lunzer-REHAYS-nadp",
|
| 668 |
+
"lunzer-REHVGR-nad",
|
| 669 |
+
"lunzer-REHVGR-nadp",
|
| 670 |
+
"lunzer-REHVGS-nad",
|
| 671 |
+
"lunzer-REHVGS-nadp",
|
| 672 |
+
"lunzer-REHVYR-nad",
|
| 673 |
+
"lunzer-REHVYR-nadp",
|
| 674 |
+
"lunzer-REHVYS-nad",
|
| 675 |
+
"lunzer-REHVYS-nadp",
|
| 676 |
+
"lunzer-REIAGR-nad",
|
| 677 |
+
"lunzer-REIAGR-nadp",
|
| 678 |
+
"lunzer-REIAGS-nad",
|
| 679 |
+
"lunzer-REIAGS-nadp",
|
| 680 |
+
"lunzer-REIAYR-nad",
|
| 681 |
+
"lunzer-REIAYR-nadp",
|
| 682 |
+
"lunzer-REIAYS-nad",
|
| 683 |
+
"lunzer-REIAYS-nadp",
|
| 684 |
+
"lunzer-REIVGR-nad",
|
| 685 |
+
"lunzer-REIVGR-nadp",
|
| 686 |
+
"lunzer-REIVGS-nad",
|
| 687 |
+
"lunzer-REIVGS-nadp",
|
| 688 |
+
"lunzer-REIVYR-nad",
|
| 689 |
+
"lunzer-REIVYR-nadp",
|
| 690 |
+
"lunzer-REIVYS-nad",
|
| 691 |
+
"lunzer-REIVYS-nadp",
|
| 692 |
+
"lunzer-REKAGR-nad",
|
| 693 |
+
"lunzer-REKAGR-nadp",
|
| 694 |
+
"lunzer-REKAGS-nad",
|
| 695 |
+
"lunzer-REKAGS-nadp",
|
| 696 |
+
"lunzer-REKAYR-nad",
|
| 697 |
+
"lunzer-REKAYR-nadp",
|
| 698 |
+
"lunzer-REKAYS-nad",
|
| 699 |
+
"lunzer-REKAYS-nadp",
|
| 700 |
+
"lunzer-REKVGR-nad",
|
| 701 |
+
"lunzer-REKVGR-nadp",
|
| 702 |
+
"lunzer-REKVGS-nad",
|
| 703 |
+
"lunzer-REKVGS-nadp",
|
| 704 |
+
"lunzer-REKVYR-nad",
|
| 705 |
+
"lunzer-REKVYR-nadp",
|
| 706 |
+
"lunzer-REKVYS-nad",
|
| 707 |
+
"lunzer-REKVYS-nadp",
|
| 708 |
+
"lunzer-RELAGR-nad",
|
| 709 |
+
"lunzer-RELAGR-nadp",
|
| 710 |
+
"lunzer-RELAGS-nad",
|
| 711 |
+
"lunzer-RELAGS-nadp",
|
| 712 |
+
"lunzer-RELAYR-nad",
|
| 713 |
+
"lunzer-RELAYR-nadp",
|
| 714 |
+
"lunzer-RELAYS-nad",
|
| 715 |
+
"lunzer-RELAYS-nadp",
|
| 716 |
+
"lunzer-RELVGR-nad",
|
| 717 |
+
"lunzer-RELVGR-nadp",
|
| 718 |
+
"lunzer-RELVGS-nad",
|
| 719 |
+
"lunzer-RELVGS-nadp",
|
| 720 |
+
"lunzer-RELVYR-nad",
|
| 721 |
+
"lunzer-RELVYR-nadp",
|
| 722 |
+
"lunzer-RELVYS-nad",
|
| 723 |
+
"lunzer-RELVYS-nadp",
|
| 724 |
+
"lunzer-RENAGR-nad",
|
| 725 |
+
"lunzer-RENAGR-nadp",
|
| 726 |
+
"lunzer-RENAGS-nad",
|
| 727 |
+
"lunzer-RENAGS-nadp",
|
| 728 |
+
"lunzer-RENAYR-nad",
|
| 729 |
+
"lunzer-RENAYR-nadp",
|
| 730 |
+
"lunzer-RENAYS-nad",
|
| 731 |
+
"lunzer-RENAYS-nadp",
|
| 732 |
+
"lunzer-RENVGR-nad",
|
| 733 |
+
"lunzer-RENVGR-nadp",
|
| 734 |
+
"lunzer-RENVGS-nad",
|
| 735 |
+
"lunzer-RENVGS-nadp",
|
| 736 |
+
"lunzer-RENVYR-nad",
|
| 737 |
+
"lunzer-RENVYR-nadp",
|
| 738 |
+
"lunzer-RENVYS-nad",
|
| 739 |
+
"lunzer-RENVYS-nadp",
|
| 740 |
+
"lunzer-REQAGR-nad",
|
| 741 |
+
"lunzer-REQAGR-nadp",
|
| 742 |
+
"lunzer-REQAGS-nad",
|
| 743 |
+
"lunzer-REQAGS-nadp",
|
| 744 |
+
"lunzer-REQAYR-nad",
|
| 745 |
+
"lunzer-REQAYR-nadp",
|
| 746 |
+
"lunzer-REQAYS-nad",
|
| 747 |
+
"lunzer-REQAYS-nadp",
|
| 748 |
+
"lunzer-REQVGR-nad",
|
| 749 |
+
"lunzer-REQVGR-nadp",
|
| 750 |
+
"lunzer-REQVGS-nad",
|
| 751 |
+
"lunzer-REQVGS-nadp",
|
| 752 |
+
"lunzer-REQVYR-nad",
|
| 753 |
+
"lunzer-REQVYR-nadp",
|
| 754 |
+
"lunzer-REQVYS-nad",
|
| 755 |
+
"lunzer-REQVYS-nadp",
|
| 756 |
+
"lunzer-REYAGR-nad",
|
| 757 |
+
"lunzer-REYAGR-nadp",
|
| 758 |
+
"lunzer-REYAGS-nad",
|
| 759 |
+
"lunzer-REYAGS-nadp",
|
| 760 |
+
"lunzer-REYAYR-nad",
|
| 761 |
+
"lunzer-REYAYR-nadp",
|
| 762 |
+
"lunzer-REYAYS-nad",
|
| 763 |
+
"lunzer-REYAYS-nadp",
|
| 764 |
+
"lunzer-REYVGR-nad",
|
| 765 |
+
"lunzer-REYVGR-nadp",
|
| 766 |
+
"lunzer-REYVGS-nad",
|
| 767 |
+
"lunzer-REYVGS-nadp",
|
| 768 |
+
"lunzer-REYVYR-nad",
|
| 769 |
+
"lunzer-REYVYR-nadp",
|
| 770 |
+
"lunzer-REYVYS-nad",
|
| 771 |
+
"lunzer-REYVYS-nadp",
|
| 772 |
+
"lunzer-RKFAGR-nad",
|
| 773 |
+
"lunzer-RKFAGR-nadp",
|
| 774 |
+
"lunzer-RKFAGS-nad",
|
| 775 |
+
"lunzer-RKFAGS-nadp",
|
| 776 |
+
"lunzer-RKFAYR-nad",
|
| 777 |
+
"lunzer-RKFAYR-nadp",
|
| 778 |
+
"lunzer-RKFAYS-nad",
|
| 779 |
+
"lunzer-RKFAYS-nadp",
|
| 780 |
+
"lunzer-RKFVGR-nad",
|
| 781 |
+
"lunzer-RKFVGR-nadp",
|
| 782 |
+
"lunzer-RKFVGS-nad",
|
| 783 |
+
"lunzer-RKFVGS-nadp",
|
| 784 |
+
"lunzer-RKFVYR-nad",
|
| 785 |
+
"lunzer-RKFVYR-nadp",
|
| 786 |
+
"lunzer-RKFVYS-nad",
|
| 787 |
+
"lunzer-RKFVYS-nadp",
|
| 788 |
+
"lunzer-RKHAGR-nad",
|
| 789 |
+
"lunzer-RKHAGR-nadp",
|
| 790 |
+
"lunzer-RKHAGS-nad",
|
| 791 |
+
"lunzer-RKHAGS-nadp",
|
| 792 |
+
"lunzer-RKHAYR-nad",
|
| 793 |
+
"lunzer-RKHAYR-nadp",
|
| 794 |
+
"lunzer-RKHAYS-nad",
|
| 795 |
+
"lunzer-RKHAYS-nadp",
|
| 796 |
+
"lunzer-RKHVGR-nad",
|
| 797 |
+
"lunzer-RKHVGR-nadp",
|
| 798 |
+
"lunzer-RKHVGS-nad",
|
| 799 |
+
"lunzer-RKHVGS-nadp",
|
| 800 |
+
"lunzer-RKHVYR-nad",
|
| 801 |
+
"lunzer-RKHVYR-nadp",
|
| 802 |
+
"lunzer-RKHVYS-nad",
|
| 803 |
+
"lunzer-RKHVYS-nadp",
|
| 804 |
+
"lunzer-RKIAGR-nad",
|
| 805 |
+
"lunzer-RKIAGR-nadp",
|
| 806 |
+
"lunzer-RKIAGS-nad",
|
| 807 |
+
"lunzer-RKIAGS-nadp",
|
| 808 |
+
"lunzer-RKIAYR-nad",
|
| 809 |
+
"lunzer-RKIAYR-nadp",
|
| 810 |
+
"lunzer-RKIAYS-nad",
|
| 811 |
+
"lunzer-RKIAYS-nadp",
|
| 812 |
+
"lunzer-RKIVGR-nad",
|
| 813 |
+
"lunzer-RKIVGR-nadp",
|
| 814 |
+
"lunzer-RKIVGS-nad",
|
| 815 |
+
"lunzer-RKIVGS-nadp",
|
| 816 |
+
"lunzer-RKIVYR-nad",
|
| 817 |
+
"lunzer-RKIVYR-nadp",
|
| 818 |
+
"lunzer-RKIVYS-nad",
|
| 819 |
+
"lunzer-RKIVYS-nadp",
|
| 820 |
+
"lunzer-RKKAGR-nad",
|
| 821 |
+
"lunzer-RKKAGR-nadp",
|
| 822 |
+
"lunzer-RKKAGS-nad",
|
| 823 |
+
"lunzer-RKKAGS-nadp",
|
| 824 |
+
"lunzer-RKKAYR-nad",
|
| 825 |
+
"lunzer-RKKAYR-nadp",
|
| 826 |
+
"lunzer-RKKAYS-nad",
|
| 827 |
+
"lunzer-RKKAYS-nadp",
|
| 828 |
+
"lunzer-RKKVGR-nad",
|
| 829 |
+
"lunzer-RKKVGR-nadp",
|
| 830 |
+
"lunzer-RKKVGS-nad",
|
| 831 |
+
"lunzer-RKKVGS-nadp",
|
| 832 |
+
"lunzer-RKKVYR-nad",
|
| 833 |
+
"lunzer-RKKVYR-nadp",
|
| 834 |
+
"lunzer-RKKVYS-nad",
|
| 835 |
+
"lunzer-RKKVYS-nadp",
|
| 836 |
+
"lunzer-RKLAGR-nad",
|
| 837 |
+
"lunzer-RKLAGR-nadp",
|
| 838 |
+
"lunzer-RKLAGS-nad",
|
| 839 |
+
"lunzer-RKLAGS-nadp",
|
| 840 |
+
"lunzer-RKLAYR-nad",
|
| 841 |
+
"lunzer-RKLAYR-nadp",
|
| 842 |
+
"lunzer-RKLAYS-nad",
|
| 843 |
+
"lunzer-RKLAYS-nadp",
|
| 844 |
+
"lunzer-RKLVGR-nad",
|
| 845 |
+
"lunzer-RKLVGR-nadp",
|
| 846 |
+
"lunzer-RKLVGS-nad",
|
| 847 |
+
"lunzer-RKLVGS-nadp",
|
| 848 |
+
"lunzer-RKLVYR-nad",
|
| 849 |
+
"lunzer-RKLVYR-nadp",
|
| 850 |
+
"lunzer-RKLVYS-nad",
|
| 851 |
+
"lunzer-RKLVYS-nadp",
|
| 852 |
+
"lunzer-RKNAGR-nad",
|
| 853 |
+
"lunzer-RKNAGR-nadp",
|
| 854 |
+
"lunzer-RKNAGS-nad",
|
| 855 |
+
"lunzer-RKNAGS-nadp",
|
| 856 |
+
"lunzer-RKNAYR-nad",
|
| 857 |
+
"lunzer-RKNAYR-nadp",
|
| 858 |
+
"lunzer-RKNAYS-nad",
|
| 859 |
+
"lunzer-RKNAYS-nadp",
|
| 860 |
+
"lunzer-RKNVGR-nad",
|
| 861 |
+
"lunzer-RKNVGR-nadp",
|
| 862 |
+
"lunzer-RKNVGS-nad",
|
| 863 |
+
"lunzer-RKNVGS-nadp",
|
| 864 |
+
"lunzer-RKNVYR-nad",
|
| 865 |
+
"lunzer-RKNVYR-nadp",
|
| 866 |
+
"lunzer-RKNVYS-nad",
|
| 867 |
+
"lunzer-RKNVYS-nadp",
|
| 868 |
+
"lunzer-RKQAGR-nad",
|
| 869 |
+
"lunzer-RKQAGR-nadp",
|
| 870 |
+
"lunzer-RKQAGS-nad",
|
| 871 |
+
"lunzer-RKQAGS-nadp",
|
| 872 |
+
"lunzer-RKQAYR-nad",
|
| 873 |
+
"lunzer-RKQAYR-nadp",
|
| 874 |
+
"lunzer-RKQAYS-nad",
|
| 875 |
+
"lunzer-RKQAYS-nadp",
|
| 876 |
+
"lunzer-RKQVGR-nad",
|
| 877 |
+
"lunzer-RKQVGR-nadp",
|
| 878 |
+
"lunzer-RKQVGS-nad",
|
| 879 |
+
"lunzer-RKQVGS-nadp",
|
| 880 |
+
"lunzer-RKQVYR-nad",
|
| 881 |
+
"lunzer-RKQVYR-nadp",
|
| 882 |
+
"lunzer-RKQVYS-nad",
|
| 883 |
+
"lunzer-RKQVYS-nadp",
|
| 884 |
+
"lunzer-RKYAGR-nad",
|
| 885 |
+
"lunzer-RKYAGR-nadp",
|
| 886 |
+
"lunzer-RKYAGS-nad",
|
| 887 |
+
"lunzer-RKYAGS-nadp",
|
| 888 |
+
"lunzer-RKYAYR-nad",
|
| 889 |
+
"lunzer-RKYAYR-nadp",
|
| 890 |
+
"lunzer-RKYAYS-nad",
|
| 891 |
+
"lunzer-RKYAYS-nadp",
|
| 892 |
+
"lunzer-RKYVGR-nad",
|
| 893 |
+
"lunzer-RKYVGR-nadp",
|
| 894 |
+
"lunzer-RKYVGS-nad",
|
| 895 |
+
"lunzer-RKYVGS-nadp",
|
| 896 |
+
"lunzer-RKYVYR-nad",
|
| 897 |
+
"lunzer-RKYVYR-nadp",
|
| 898 |
+
"lunzer-RKYVYS-nad",
|
| 899 |
+
"lunzer-RKYVYS-nadp",
|
| 900 |
+
"lunzer-RNFAGR-nad",
|
| 901 |
+
"lunzer-RNFAGR-nadp",
|
| 902 |
+
"lunzer-RNFAGS-nad",
|
| 903 |
+
"lunzer-RNFAGS-nadp",
|
| 904 |
+
"lunzer-RNFAYR-nad",
|
| 905 |
+
"lunzer-RNFAYR-nadp",
|
| 906 |
+
"lunzer-RNFAYS-nad",
|
| 907 |
+
"lunzer-RNFAYS-nadp",
|
| 908 |
+
"lunzer-RNFVGR-nad",
|
| 909 |
+
"lunzer-RNFVGR-nadp",
|
| 910 |
+
"lunzer-RNFVGS-nad",
|
| 911 |
+
"lunzer-RNFVGS-nadp",
|
| 912 |
+
"lunzer-RNFVYR-nad",
|
| 913 |
+
"lunzer-RNFVYR-nadp",
|
| 914 |
+
"lunzer-RNFVYS-nad",
|
| 915 |
+
"lunzer-RNFVYS-nadp",
|
| 916 |
+
"lunzer-RNHAGR-nad",
|
| 917 |
+
"lunzer-RNHAGR-nadp",
|
| 918 |
+
"lunzer-RNHAGS-nad",
|
| 919 |
+
"lunzer-RNHAGS-nadp",
|
| 920 |
+
"lunzer-RNHAYR-nad",
|
| 921 |
+
"lunzer-RNHAYR-nadp",
|
| 922 |
+
"lunzer-RNHAYS-nad",
|
| 923 |
+
"lunzer-RNHAYS-nadp",
|
| 924 |
+
"lunzer-RNHVGR-nad",
|
| 925 |
+
"lunzer-RNHVGR-nadp",
|
| 926 |
+
"lunzer-RNHVGS-nad",
|
| 927 |
+
"lunzer-RNHVGS-nadp",
|
| 928 |
+
"lunzer-RNHVYR-nad",
|
| 929 |
+
"lunzer-RNHVYR-nadp",
|
| 930 |
+
"lunzer-RNHVYS-nad",
|
| 931 |
+
"lunzer-RNHVYS-nadp",
|
| 932 |
+
"lunzer-RNIAGR-nad",
|
| 933 |
+
"lunzer-RNIAGR-nadp",
|
| 934 |
+
"lunzer-RNIAGS-nad",
|
| 935 |
+
"lunzer-RNIAGS-nadp",
|
| 936 |
+
"lunzer-RNIAYR-nad",
|
| 937 |
+
"lunzer-RNIAYR-nadp",
|
| 938 |
+
"lunzer-RNIAYS-nad",
|
| 939 |
+
"lunzer-RNIAYS-nadp",
|
| 940 |
+
"lunzer-RNIVGR-nad",
|
| 941 |
+
"lunzer-RNIVGR-nadp",
|
| 942 |
+
"lunzer-RNIVGS-nad",
|
| 943 |
+
"lunzer-RNIVGS-nadp",
|
| 944 |
+
"lunzer-RNIVYR-nad",
|
| 945 |
+
"lunzer-RNIVYR-nadp",
|
| 946 |
+
"lunzer-RNIVYS-nad",
|
| 947 |
+
"lunzer-RNIVYS-nadp",
|
| 948 |
+
"lunzer-RNKAGR-nad",
|
| 949 |
+
"lunzer-RNKAGR-nadp",
|
| 950 |
+
"lunzer-RNKAGS-nad",
|
| 951 |
+
"lunzer-RNKAGS-nadp",
|
| 952 |
+
"lunzer-RNKAYR-nad",
|
| 953 |
+
"lunzer-RNKAYR-nadp",
|
| 954 |
+
"lunzer-RNKAYS-nad",
|
| 955 |
+
"lunzer-RNKAYS-nadp",
|
| 956 |
+
"lunzer-RNKVGR-nad",
|
| 957 |
+
"lunzer-RNKVGR-nadp",
|
| 958 |
+
"lunzer-RNKVGS-nad",
|
| 959 |
+
"lunzer-RNKVGS-nadp",
|
| 960 |
+
"lunzer-RNKVYR-nad",
|
| 961 |
+
"lunzer-RNKVYR-nadp",
|
| 962 |
+
"lunzer-RNKVYS-nad",
|
| 963 |
+
"lunzer-RNKVYS-nadp",
|
| 964 |
+
"lunzer-RNLAGR-nad",
|
| 965 |
+
"lunzer-RNLAGR-nadp",
|
| 966 |
+
"lunzer-RNLAGS-nad",
|
| 967 |
+
"lunzer-RNLAGS-nadp",
|
| 968 |
+
"lunzer-RNLAYR-nad",
|
| 969 |
+
"lunzer-RNLAYR-nadp",
|
| 970 |
+
"lunzer-RNLAYS-nad",
|
| 971 |
+
"lunzer-RNLAYS-nadp",
|
| 972 |
+
"lunzer-RNLVGR-nad",
|
| 973 |
+
"lunzer-RNLVGR-nadp",
|
| 974 |
+
"lunzer-RNLVGS-nad",
|
| 975 |
+
"lunzer-RNLVGS-nadp",
|
| 976 |
+
"lunzer-RNLVYR-nad",
|
| 977 |
+
"lunzer-RNLVYR-nadp",
|
| 978 |
+
"lunzer-RNLVYS-nad",
|
| 979 |
+
"lunzer-RNLVYS-nadp",
|
| 980 |
+
"lunzer-RNNAGR-nad",
|
| 981 |
+
"lunzer-RNNAGR-nadp",
|
| 982 |
+
"lunzer-RNNAGS-nad",
|
| 983 |
+
"lunzer-RNNAGS-nadp",
|
| 984 |
+
"lunzer-RNNAYR-nad",
|
| 985 |
+
"lunzer-RNNAYR-nadp",
|
| 986 |
+
"lunzer-RNNAYS-nad",
|
| 987 |
+
"lunzer-RNNAYS-nadp",
|
| 988 |
+
"lunzer-RNNVGR-nad",
|
| 989 |
+
"lunzer-RNNVGR-nadp",
|
| 990 |
+
"lunzer-RNNVGS-nad",
|
| 991 |
+
"lunzer-RNNVGS-nadp",
|
| 992 |
+
"lunzer-RNNVYR-nad",
|
| 993 |
+
"lunzer-RNNVYR-nadp",
|
| 994 |
+
"lunzer-RNNVYS-nad",
|
| 995 |
+
"lunzer-RNNVYS-nadp",
|
| 996 |
+
"lunzer-RNQAGR-nad",
|
| 997 |
+
"lunzer-RNQAGR-nadp",
|
| 998 |
+
"lunzer-RNQAGS-nad",
|
| 999 |
+
"lunzer-RNQAGS-nadp",
|
| 1000 |
+
"lunzer-RNQAYR-nad",
|
| 1001 |
+
"lunzer-RNQAYR-nadp",
|
| 1002 |
+
"lunzer-RNQAYS-nad",
|
| 1003 |
+
"lunzer-RNQAYS-nadp",
|
| 1004 |
+
"lunzer-RNQVGR-nad",
|
| 1005 |
+
"lunzer-RNQVGR-nadp",
|
| 1006 |
+
"lunzer-RNQVGS-nad",
|
| 1007 |
+
"lunzer-RNQVGS-nadp",
|
| 1008 |
+
"lunzer-RNQVYR-nad",
|
| 1009 |
+
"lunzer-RNQVYR-nadp",
|
| 1010 |
+
"lunzer-RNQVYS-nad",
|
| 1011 |
+
"lunzer-RNQVYS-nadp",
|
| 1012 |
+
"lunzer-RNYAGR-nad",
|
| 1013 |
+
"lunzer-RNYAGR-nadp",
|
| 1014 |
+
"lunzer-RNYAGS-nad",
|
| 1015 |
+
"lunzer-RNYAGS-nadp",
|
| 1016 |
+
"lunzer-RNYAYR-nad",
|
| 1017 |
+
"lunzer-RNYAYR-nadp",
|
| 1018 |
+
"lunzer-RNYAYS-nad",
|
| 1019 |
+
"lunzer-RNYAYS-nadp",
|
| 1020 |
+
"lunzer-RNYVGR-nad",
|
| 1021 |
+
"lunzer-RNYVGR-nadp",
|
| 1022 |
+
"lunzer-RNYVGS-nad",
|
| 1023 |
+
"lunzer-RNYVGS-nadp",
|
| 1024 |
+
"lunzer-RNYVYR-nad",
|
| 1025 |
+
"lunzer-RNYVYR-nadp",
|
| 1026 |
+
"lunzer-RNYVYS-nad",
|
| 1027 |
+
"lunzer-RNYVYS-nadp"
|
| 1028 |
+
],
|
| 1029 |
+
"cofactor_counts": {
|
| 1030 |
+
"NAD": 512,
|
| 1031 |
+
"NADP": 512
|
| 1032 |
+
},
|
| 1033 |
+
"dataset": "Lunzer ancient adaptive landscape",
|
| 1034 |
+
"dataset_doi": "10.5061/dryad.7nd70",
|
| 1035 |
+
"frozen_protocol": {
|
| 1036 |
+
"endpoint": "derived_ln_kcat_equals_ln_km_plus_ln_kcat_over_km",
|
| 1037 |
+
"primary_metrics": [
|
| 1038 |
+
"within_cofactor_spearman",
|
| 1039 |
+
"within_cofactor_pairwise_accuracy",
|
| 1040 |
+
"within_cofactor_top_10pct_enrichment"
|
| 1041 |
+
],
|
| 1042 |
+
"random_expectations": {
|
| 1043 |
+
"pairwise_accuracy": 0.5,
|
| 1044 |
+
"spearman": 0.0,
|
| 1045 |
+
"top_10pct_enrichment": 1.0
|
| 1046 |
+
},
|
| 1047 |
+
"status": "confirmatory_no_model_selection"
|
| 1048 |
+
},
|
| 1049 |
+
"genotypes": 512,
|
| 1050 |
+
"license": "CC0-1.0",
|
| 1051 |
+
"limitations": [
|
| 1052 |
+
"All variants share one E. coli IMDH scaffold; this is not homology-cold.",
|
| 1053 |
+
"The deposited values are model-fit kinetics rather than independent raw replicates.",
|
| 1054 |
+
"An unresolved source-unit constant prevents absolute RMSE claims; ranking is invariant.",
|
| 1055 |
+
"The UniKP corpus lacks record-level citations, so publication overlap is unavailable."
|
| 1056 |
+
],
|
| 1057 |
+
"records": 1024,
|
| 1058 |
+
"source_identity": {
|
| 1059 |
+
"row_count": 513,
|
| 1060 |
+
"sha256": "7bfd71d78235ade06a9e117b8229ad99b1fe7adceb0a5ed72d708c3e925c2a69",
|
| 1061 |
+
"size_bytes": 38761
|
| 1062 |
+
},
|
| 1063 |
+
"unikp_exact_overlap": {
|
| 1064 |
+
"exact_sequence_records": 0,
|
| 1065 |
+
"exact_sequence_substrate_pairs": 0,
|
| 1066 |
+
"exact_substrate_records": 0,
|
| 1067 |
+
"publication_overlap": "unavailable_no_record_level_unikp_citations"
|
| 1068 |
+
}
|
| 1069 |
+
}
|
data/temporal/global-accepted-components.fasta
ADDED
|
The diff for this file is too large to render.
See raw diff
|
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|
data/temporal/global-accepted-mapping.csv
ADDED
|
@@ -0,0 +1,204 @@
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| 1 |
+
source_id,source_row_index,candidate_id,substrate_id,global_family_id,retained_after_family_cap,component_index,source_sequence_id,global_sequence_id,sequence_sha256,mmseqs_representative
|
| 2 |
+
biostudies-S-EPMC10795190,1,atpprt-001,pubchem:5957,family-0001,True,1,ab-hisgs-wp001000724,gseq-000001,1dee7c602a3dd859e861facdfd5fe545b1e4610049be8fcc9843577b7ceced30,gseq-000010
|
| 3 |
+
biostudies-S-EPMC10795190,2,atpprt-003,pubchem:5957,family-0001,True,1,ab-hisgs-wp001000724,gseq-000002,1dee7c602a3dd859e861facdfd5fe545b1e4610049be8fcc9843577b7ceced30,gseq-000010
|
| 4 |
+
biostudies-S-EPMC10795190,3,atpprt-004,pubchem:6022,family-0001,True,1,ab-hisgs-wp001000724,gseq-000003,1dee7c602a3dd859e861facdfd5fe545b1e4610049be8fcc9843577b7ceced30,gseq-000010
|
| 5 |
+
biostudies-S-EPMC10795190,4,atpprt-005,pubchem:5957,family-0001,True,1,ab-hisgs-wp001000724,gseq-000004,1dee7c602a3dd859e861facdfd5fe545b1e4610049be8fcc9843577b7ceced30,gseq-000010
|
| 6 |
+
biostudies-S-EPMC10795190,4,atpprt-005,pubchem:5957,family-0001,True,2,ab-hisz-wp000155680,gseq-000005,9dc223525b74e142269da5ad013f00ce7369b0522ac53140a2903895805f2b9b,gseq-000011
|
| 7 |
+
biostudies-S-EPMC10795190,5,atpprt-006,pubchem:6022,family-0001,True,1,ab-hisgs-wp001000724,gseq-000006,1dee7c602a3dd859e861facdfd5fe545b1e4610049be8fcc9843577b7ceced30,gseq-000010
|
| 8 |
+
biostudies-S-EPMC10795190,5,atpprt-006,pubchem:6022,family-0001,True,2,ab-hisz-wp000155680,gseq-000007,9dc223525b74e142269da5ad013f00ce7369b0522ac53140a2903895805f2b9b,gseq-000011
|
| 9 |
+
biostudies-S-EPMC10795190,6,atpprt-007,pubchem:5957,family-0001,True,1,ab-hisgs-wp001000724,gseq-000008,1dee7c602a3dd859e861facdfd5fe545b1e4610049be8fcc9843577b7ceced30,gseq-000010
|
| 10 |
+
biostudies-S-EPMC10795190,7,atpprt-008,pubchem:5957,family-0001,True,1,ab-hisgs-wp001000724,gseq-000009,1dee7c602a3dd859e861facdfd5fe545b1e4610049be8fcc9843577b7ceced30,gseq-000010
|
| 11 |
+
biostudies-S-EPMC10795190,8,atpprt-009,pubchem:5957,family-0001,True,1,ab-hisgs-wp001000724,gseq-000010,1dee7c602a3dd859e861facdfd5fe545b1e4610049be8fcc9843577b7ceced30,gseq-000010
|
| 12 |
+
biostudies-S-EPMC10795190,8,atpprt-009,pubchem:5957,family-0001,True,2,ab-hisz-wp000155680,gseq-000011,9dc223525b74e142269da5ad013f00ce7369b0522ac53140a2903895805f2b9b,gseq-000011
|
| 13 |
+
biostudies-S-EPMC11760959,1,ndascdo-001,pubchem:7408486,family-0002,True,1,ndascdo-wt-a,gseq-000012,f2c404d5b7e8145f07651c08b55a9d8439262a5d6cff5d0de8691d9240e12da2,gseq-000026
|
| 14 |
+
biostudies-S-EPMC11760959,1,ndascdo-001,pubchem:7408486,family-0002,True,2,ndascdo-b,gseq-000013,56c942438204d4eccbd0d50696ac983a336823d103407e26268bd4bbe399be38,gseq-000027
|
| 15 |
+
biostudies-S-EPMC11760959,2,ndascdo-002,pubchem:7408259,family-0002,True,1,ndascdo-wt-a,gseq-000014,f2c404d5b7e8145f07651c08b55a9d8439262a5d6cff5d0de8691d9240e12da2,gseq-000026
|
| 16 |
+
biostudies-S-EPMC11760959,2,ndascdo-002,pubchem:7408259,family-0002,True,2,ndascdo-b,gseq-000015,56c942438204d4eccbd0d50696ac983a336823d103407e26268bd4bbe399be38,gseq-000027
|
| 17 |
+
biostudies-S-EPMC11760959,3,ndascdo-003,pubchem:70694585,family-0002,True,1,ndascdo-wt-a,gseq-000016,f2c404d5b7e8145f07651c08b55a9d8439262a5d6cff5d0de8691d9240e12da2,gseq-000026
|
| 18 |
+
biostudies-S-EPMC11760959,3,ndascdo-003,pubchem:70694585,family-0002,True,2,ndascdo-b,gseq-000017,56c942438204d4eccbd0d50696ac983a336823d103407e26268bd4bbe399be38,gseq-000027
|
| 19 |
+
biostudies-S-EPMC11760959,4,ndascdo-004,pubchem:7076549,family-0002,True,1,ndascdo-wt-a,gseq-000018,f2c404d5b7e8145f07651c08b55a9d8439262a5d6cff5d0de8691d9240e12da2,gseq-000026
|
| 20 |
+
biostudies-S-EPMC11760959,4,ndascdo-004,pubchem:7076549,family-0002,True,2,ndascdo-b,gseq-000019,56c942438204d4eccbd0d50696ac983a336823d103407e26268bd4bbe399be38,gseq-000027
|
| 21 |
+
biostudies-S-EPMC11760959,5,ndascdo-005,pubchem:7076549,family-0002,True,1,ndascdo-s58a-a,gseq-000020,9b9438a3edd2b7b9f9ae372b7b43bee8f687e3477891b8fec496a31fb53280db,gseq-000026
|
| 22 |
+
biostudies-S-EPMC11760959,5,ndascdo-005,pubchem:7076549,family-0002,True,2,ndascdo-b,gseq-000021,56c942438204d4eccbd0d50696ac983a336823d103407e26268bd4bbe399be38,gseq-000027
|
| 23 |
+
biostudies-S-EPMC11760959,6,ndascdo-006,pubchem:7074739,family-0002,True,1,ndascdo-wt-a,gseq-000022,f2c404d5b7e8145f07651c08b55a9d8439262a5d6cff5d0de8691d9240e12da2,gseq-000026
|
| 24 |
+
biostudies-S-EPMC11760959,6,ndascdo-006,pubchem:7074739,family-0002,True,2,ndascdo-b,gseq-000023,56c942438204d4eccbd0d50696ac983a336823d103407e26268bd4bbe399be38,gseq-000027
|
| 25 |
+
biostudies-S-EPMC11760959,7,ndascdo-007,pubchem:443440,family-0002,True,1,ndascdo-wt-a,gseq-000024,f2c404d5b7e8145f07651c08b55a9d8439262a5d6cff5d0de8691d9240e12da2,gseq-000026
|
| 26 |
+
biostudies-S-EPMC11760959,7,ndascdo-007,pubchem:443440,family-0002,True,2,ndascdo-b,gseq-000025,56c942438204d4eccbd0d50696ac983a336823d103407e26268bd4bbe399be38,gseq-000027
|
| 27 |
+
biostudies-S-EPMC11760959,8,ndascdo-008,pubchem:7408279,family-0002,True,1,ndascdo-wt-a,gseq-000026,f2c404d5b7e8145f07651c08b55a9d8439262a5d6cff5d0de8691d9240e12da2,gseq-000026
|
| 28 |
+
biostudies-S-EPMC11760959,8,ndascdo-008,pubchem:7408279,family-0002,True,2,ndascdo-b,gseq-000027,56c942438204d4eccbd0d50696ac983a336823d103407e26268bd4bbe399be38,gseq-000027
|
| 29 |
+
biostudies-S-EPMC11955521,1,gtpccm-007,pubchem:135398633,family-0003,True,1,pgk-pet28a-his6,gseq-000028,d5076f100ea900e978e85c400e2182ab800dacef57b9b82e356908098d9ca654,gseq-000031
|
| 30 |
+
biostudies-S-EPMC11955521,2,gtpccm-008,pubchem:5957,family-0003,True,1,pgk-pet28a-his6,gseq-000029,d5076f100ea900e978e85c400e2182ab800dacef57b9b82e356908098d9ca654,gseq-000031
|
| 31 |
+
biostudies-S-EPMC11955521,3,gtpccm-009,pubchem:439183,family-0003,True,1,pgk-pet28a-his6,gseq-000030,d5076f100ea900e978e85c400e2182ab800dacef57b9b82e356908098d9ca654,gseq-000031
|
| 32 |
+
biostudies-S-EPMC11955521,4,gtpccm-010,pubchem:439183,family-0003,True,1,pgk-pet28a-his6,gseq-000031,d5076f100ea900e978e85c400e2182ab800dacef57b9b82e356908098d9ca654,gseq-000031
|
| 33 |
+
biostudies-S-EPMC12412097,1,scda-001,pubchem:946,family-0004,True,1,scda-wt,gseq-000032,95b15373ec2537e8690e83655240fdb837fbfec0355d1303999f04310de6fd6b,gseq-000032
|
| 34 |
+
biostudies-S-EPMC12412097,2,scda-002,pubchem:946,family-0004,True,1,scda-s77e,gseq-000033,bfc27d4c5384c1a403750db17e172e17696cfb8f10884a6078fb4a9531f92817,gseq-000032
|
| 35 |
+
biostudies-S-EPMC12412097,3,scda-003,pubchem:946,family-0004,True,1,scda-cf,gseq-000034,2138894c350830986cf0b031d69dd3bc14e1e45666ec36a2aca4b1eb2a7c020e,gseq-000032
|
| 36 |
+
biostudies-S-EPMC12412097,4,scda-004,pubchem:946,family-0004,True,1,scda-cf-s77e,gseq-000035,e93b11d6d19e9b221eda6c514afdeebfd83d519521790fd3d7451d0d9f6631cd,gseq-000032
|
| 37 |
+
biostudies-S-EPMC12645435,1,ndt-001,pubchem:135398592,family-0005,True,1,K9TVX3|WT,gseq-000036,1fcbe65964b3abf3db725f512123c42ec134733957e0de91eaca38c97feaae58,gseq-000050
|
| 38 |
+
biostudies-S-EPMC12645435,2,ndt-002,pubchem:60961,family-0005,True,1,K9TVX3|WT,gseq-000037,1fcbe65964b3abf3db725f512123c42ec134733957e0de91eaca38c97feaae58,gseq-000050
|
| 39 |
+
biostudies-S-EPMC12645435,3,ndt-003,pubchem:135398635,family-0005,True,1,K9TVX3|WT,gseq-000038,1fcbe65964b3abf3db725f512123c42ec134733957e0de91eaca38c97feaae58,gseq-000050
|
| 40 |
+
biostudies-S-EPMC12645435,4,ndt-004,pubchem:135398641,family-0005,True,1,K9TVX3|WT,gseq-000039,1fcbe65964b3abf3db725f512123c42ec134733957e0de91eaca38c97feaae58,gseq-000050
|
| 41 |
+
biostudies-S-EPMC12645435,5,ndt-005,pubchem:13730,family-0005,True,1,K9TVX3|WT,gseq-000040,1fcbe65964b3abf3db725f512123c42ec134733957e0de91eaca38c97feaae58,gseq-000050
|
| 42 |
+
biostudies-S-EPMC12645435,6,ndt-006,pubchem:135398592,family-0005,True,1,K9TVX3|Y7F,gseq-000041,0e85150fd7e25034c3d7dbe3586c8dd77f45b19a692ac830e73d2245271aec80,gseq-000050
|
| 43 |
+
biostudies-S-EPMC12645435,7,ndt-007,pubchem:60961,family-0005,True,1,K9TVX3|Y7F,gseq-000042,0e85150fd7e25034c3d7dbe3586c8dd77f45b19a692ac830e73d2245271aec80,gseq-000050
|
| 44 |
+
biostudies-S-EPMC12645435,8,ndt-008,pubchem:135398635,family-0005,True,1,K9TVX3|Y7F,gseq-000043,0e85150fd7e25034c3d7dbe3586c8dd77f45b19a692ac830e73d2245271aec80,gseq-000050
|
| 45 |
+
biostudies-S-EPMC12645435,9,ndt-009,pubchem:135398641,family-0005,True,1,K9TVX3|Y7F,gseq-000044,0e85150fd7e25034c3d7dbe3586c8dd77f45b19a692ac830e73d2245271aec80,gseq-000050
|
| 46 |
+
biostudies-S-EPMC12645435,10,ndt-010,pubchem:135398641,family-0005,True,1,K9TVX3|Y7A,gseq-000045,0e6d3c49b300ab952f2e02404fdf9dc84927062c313a7eb632a8ab74f481b6d4,gseq-000050
|
| 47 |
+
biostudies-S-EPMC12645435,11,ndt-011,pubchem:135398641,family-0005,True,1,K9TVX3|Y7F-A9S,gseq-000046,149337a3401a13915cf1e2ca7ea2765db689ab60b696615baee2780f9ee365f4,gseq-000050
|
| 48 |
+
biostudies-S-EPMC12645435,12,ndt-012,pubchem:135398641,family-0005,True,1,K9TVX3|Y7F-A9S-V85S,gseq-000047,5a87cada7452e12f2da8d531638411e6ff6b96d1ce0ff3295b5f58e2885580e8,gseq-000050
|
| 49 |
+
biostudies-S-EPMC12645435,13,ndt-013,pubchem:135398641,family-0005,True,1,K9TVX3|Y7F-A9S-P40A,gseq-000048,895214d727c4c8b62407440251f390c098a7ff3777401a230a410f341e94cd65,gseq-000050
|
| 50 |
+
biostudies-S-EPMC12645435,14,ndt-014,pubchem:135398641,family-0005,True,1,K9TVX3|P40A,gseq-000049,46bd5a95c797c5226c059362ed5ac48bbc3894b49d8748b68a2d563275a6ea02,gseq-000050
|
| 51 |
+
biostudies-S-EPMC12645435,15,ndt-015,pubchem:135398641,family-0005,True,1,K9TVX3|D62N,gseq-000050,dc15f96d3a69f009b55b4bd30dc46e040ee7fc1506846b5a70e6b461fc802626,gseq-000050
|
| 52 |
+
biostudies-S-EPMC12667214,1,ttphos-004,pubchem:6131,family-0006,True,1,cmpk-WT,gseq-000051,275427ece4b8a66729283b4fbe71f21fb22073477f415760ab7b903111c7a018,gseq-000056
|
| 53 |
+
biostudies-S-EPMC12667214,2,ttphos-005,pubchem:5957,family-0006,True,1,cmpk-WT,gseq-000052,275427ece4b8a66729283b4fbe71f21fb22073477f415760ab7b903111c7a018,gseq-000056
|
| 54 |
+
biostudies-S-EPMC12667214,3,ttphos-006,pubchem:6131,family-0006,True,1,cmpk-S11A,gseq-000053,9413e9509eff909e912f68a6f8ed7541478c9c335a3cfeca0fedb12a2c7fe0b8,gseq-000056
|
| 55 |
+
biostudies-S-EPMC12667214,4,ttphos-007,pubchem:5957,family-0006,True,1,cmpk-S11A,gseq-000054,9413e9509eff909e912f68a6f8ed7541478c9c335a3cfeca0fedb12a2c7fe0b8,gseq-000056
|
| 56 |
+
biostudies-S-EPMC12667214,5,ttphos-008,pubchem:6131,family-0006,True,1,cmpk-S11E,gseq-000055,63415e8fde68499f7b1a31f7a8d66c787933ce54f3bdb1cb42e86e80abaf7459,gseq-000056
|
| 57 |
+
biostudies-S-EPMC12667214,6,ttphos-009,pubchem:5957,family-0006,True,1,cmpk-S11E,gseq-000056,63415e8fde68499f7b1a31f7a8d66c787933ce54f3bdb1cb42e86e80abaf7459,gseq-000056
|
| 58 |
+
biostudies-S-EPMC12667214,7,ttphos-025,pubchem:1023,family-0007,True,1,ppase-WT,gseq-000057,1d4e652c0ed0648adc043e208437432ab31a810230acf6343c30d63dd3d6b457,gseq-000059
|
| 59 |
+
biostudies-S-EPMC12667214,8,ttphos-026,pubchem:1023,family-0007,True,1,ppase-Y140F,gseq-000058,685679660201a72c2c3ea6db11e61be44345ad678db3f63d6b2ed53637a730b4,gseq-000059
|
| 60 |
+
biostudies-S-EPMC12667214,9,ttphos-027,pubchem:1023,family-0007,True,1,ppase-Y140E,gseq-000059,8cd8326b7201dca251d93e319d7508cca724898b2ba37d2028b665432c508f6d,gseq-000059
|
| 61 |
+
biostudies-S-EPMC12751057,1,human-dnph1-001,pubchem:447206,family-0008,True,1,dnph1-wt,gseq-000060,1abd4d8e74ca6eb622ab851877a33bf13d3b2c78839f1f2e4b0e7c2b2163f859,gseq-000063
|
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europepmc-PMC11659886,12,f3-sulfoglycosidase-012,pubchem:18740504,family-0019,True,1,yg-y439a,gseq-000137,0104d575966a2034345ebc782247874be9d366bc57f00ad65243dba896766298,gseq-000128
|
| 139 |
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europepmc-PMC11659886,13,f3-sulfoglycosidase-013,pubchem:18740504,family-0019,True,1,yg-y439q,gseq-000138,fc8f2fb87fe290fe90aee539ee2fda577e7b58eafb41529d6087854e084ada02,gseq-000128
|
| 140 |
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europepmc-PMC11659886,14,f3-sulfoglycosidase-014,pubchem:18740504,family-0019,True,1,yg-g440i,gseq-000139,35f9fa9e4c6aa4eeecb79efab0ae94800bb01346611ded0ed605dadb7eb59275,gseq-000128
|
| 141 |
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europepmc-PMC11659886,15,f3-sulfoglycosidase-015,pubchem:18740504,family-0019,True,1,yg-n445d,gseq-000140,294938cff221972f97acc9b9531801e7da7f15dcd0bc9404ffd9891d065cd1a5,gseq-000128
|
| 142 |
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europepmc-PMC11659886,16,f3-sulfoglycosidase-016,pubchem:18740504,family-0019,True,1,yg-r446a,gseq-000141,1b9a48f506379ff94a3474794bf4cdf443dabb28d627a01057cc7bb67ec9750b,gseq-000128
|
| 143 |
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europepmc-PMC11659886,17,f3-sulfoglycosidase-017,pubchem:18740504,family-0020,True,1,f3-orf26-wt,gseq-000142,fd3cfe56e4094921ca855fcafee6bfa16b4bc20d0a3f702d9416256606e13876,gseq-000149
|
| 144 |
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europepmc-PMC11659886,18,f3-sulfoglycosidase-018,pubchem:2733787,family-0020,True,1,f3-orf26-wt,gseq-000143,fd3cfe56e4094921ca855fcafee6bfa16b4bc20d0a3f702d9416256606e13876,gseq-000149
|
| 145 |
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europepmc-PMC11659886,19,f3-sulfoglycosidase-019,pubchem:18740504,family-0020,True,1,f3-orf26-q433e,gseq-000144,ae44c0e72f43e094d2a75da44f9b7b21dfcd12c784dd8767d8ed514b016e8518,gseq-000149
|
| 146 |
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europepmc-PMC11659886,20,f3-sulfoglycosidase-020,pubchem:18740504,family-0020,True,1,f3-orf26-s438a,gseq-000145,8a3c6293a926bb79b0dcf713231e04c5b9df5155b79779e793bea683eaaf951e,gseq-000149
|
| 147 |
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europepmc-PMC11659886,21,f3-sulfoglycosidase-021,pubchem:18740504,family-0020,True,1,f3-orf26-n439d,gseq-000146,b04d952d4b83a882d8a7a6b11ead150a32ee696dc77a25d6d301aa34b47c3a46,gseq-000149
|
| 148 |
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europepmc-PMC11659886,22,f3-sulfoglycosidase-022,pubchem:18740504,family-0020,True,1,f3-orf26-y442f,gseq-000147,21c7483aa3cc0626fd3b1557a28c9ecd2b9f4844696c66b3571907d5b29f7ec4,gseq-000149
|
| 149 |
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europepmc-PMC11659886,23,f3-sulfoglycosidase-023,pubchem:18740504,family-0020,True,1,f3-orf26-n443d,gseq-000148,3c00a7fd1d56d451b1be7a4a13815605b971e1a787fbd3884cda3182dffcf44c,gseq-000149
|
| 150 |
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europepmc-PMC11659886,24,f3-sulfoglycosidase-024,pubchem:18740504,family-0020,True,1,f3-orf26-r444a,gseq-000149,72c6937f7aaebcfa7ccf51e0394bb30f51dca1aec84497fa1f5c6c6411767bba,gseq-000149
|
| 151 |
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europepmc-PMC12284513,1,cyp152-001,pubchem:985,family-0021,True,1,oletla-wt,gseq-000150,57e54e54d348eaa3a94877d65c80d99d47cea383ccecf464ef51c4ede2b39761,gseq-000153
|
| 152 |
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europepmc-PMC12284513,2,cyp152-002,pubchem:985,family-0021,True,1,oletla-wt,gseq-000151,57e54e54d348eaa3a94877d65c80d99d47cea383ccecf464ef51c4ede2b39761,gseq-000153
|
| 153 |
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europepmc-PMC12284513,3,cyp152-003,pubchem:985,family-0021,True,1,oletje-wt,gseq-000152,c5b4f566791aafaf4acf802bb92153fcd854f1be5b46b3f9d2488077006ea2e7,gseq-000153
|
| 154 |
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europepmc-PMC12284513,4,cyp152-004,pubchem:985,family-0021,True,1,oletje-wt,gseq-000153,c5b4f566791aafaf4acf802bb92153fcd854f1be5b46b3f9d2488077006ea2e7,gseq-000153
|
| 155 |
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europepmc-PMC12284513,5,cyp152-005,pubchem:985,family-0021,True,1,oletla-i178l,gseq-000154,ba190bcefd0aa2cada692ad9310386da650d26eddd5a1486daa084b5a97db4f3,gseq-000153
|
| 156 |
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europepmc-PMC12362431,1,gfus-001,pubchem:135398621,family-0022,True,1,gfus-wt,gseq-000155,de341a79df9781b8b897a8b8f94e827166f0ba3ecedd4fe14cf270b6bb15c23e,gseq-000158
|
| 157 |
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europepmc-PMC12362431,2,gfus-002,pubchem:135398621,family-0022,True,1,gfus-h186k,gseq-000156,23090dee1037f242d5870e4c706e61236790465e1f247e9ab016cb0bb2b5f016,gseq-000158
|
| 158 |
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europepmc-PMC12362431,3,gfus-003,pubchem:135398621,family-0022,True,1,gfus-c116s,gseq-000157,2d9edc608727cb20ea37fb519862d5d0c9003c5bddba996fae525b6a11530bea,gseq-000158
|
| 159 |
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|
| 160 |
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europepmc-PMC12444516,1,phok-001,pubchem:378,family-0023,True,1,sb-phok,gseq-000159,94c4ff2db152e717643c134340031413d213edfe39ee6e72ce813da0e48d52b1,gseq-000162
|
| 161 |
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europepmc-PMC12444516,2,phok-002,pubchem:12793,family-0023,True,1,sb-phok,gseq-000160,94c4ff2db152e717643c134340031413d213edfe39ee6e72ce813da0e48d52b1,gseq-000162
|
| 162 |
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europepmc-PMC12444516,3,phok-003,pubchem:378,family-0023,True,1,smtdk1-phok,gseq-000161,c7ac577f93fe921865cfe7107da8f9f17dfb48808f81cb5abb1271b080fa6a17,gseq-000162
|
| 163 |
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europepmc-PMC12444516,4,phok-004,pubchem:12793,family-0023,True,1,smtdk1-phok,gseq-000162,c7ac577f93fe921865cfe7107da8f9f17dfb48808f81cb5abb1271b080fa6a17,gseq-000162
|
| 164 |
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europepmc-PMC12444516,5,phok-005,pubchem:378,family-0023,True,1,st-phok,gseq-000163,42d8431d3b9e4bdbeb7f5df133bd04c9ab51ac136d1174b85b8464a73171896a,gseq-000162
|
| 165 |
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europepmc-PMC12444516,6,phok-006,pubchem:12793,family-0023,True,1,st-phok,gseq-000164,42d8431d3b9e4bdbeb7f5df133bd04c9ab51ac136d1174b85b8464a73171896a,gseq-000162
|
| 166 |
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europepmc-PMC12444516,7,phok-007,pubchem:378,family-0023,True,1,sy-phok,gseq-000165,bd8f9b16d27b36ca7b3fd900f13f118f3946326a6527018eeac8c2675948ee74,gseq-000162
|
| 167 |
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|
| 168 |
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|
| 169 |
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|
| 170 |
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|
| 171 |
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|
| 172 |
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| 173 |
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|
| 174 |
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europepmc-PMC12444516,15,phok-015,pubchem:378,family-0023,True,1,ng-phok,gseq-000173,e9669af3faef36beef2172596272520a7f0115bec6c3b439066bc463cfd0875c,gseq-000162
|
| 175 |
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|
| 176 |
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|
| 177 |
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|
| 178 |
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|
| 179 |
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|
| 180 |
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|
| 181 |
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|
| 182 |
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|
| 183 |
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|
| 184 |
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|
| 185 |
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europepmc-PMC12838360,8,racx-008,pubchem:6057,family-0024,True,1,racx-wt,gseq-000184,3475dce5765383c2e4bc636c630621b848be85066a09a8f29356680ea8cb90da,gseq-000192
|
| 186 |
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|
| 187 |
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europepmc-PMC12838360,10,racx-010,pubchem:6267,family-0024,True,1,racx-wt,gseq-000186,3475dce5765383c2e4bc636c630621b848be85066a09a8f29356680ea8cb90da,gseq-000192
|
| 188 |
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europepmc-PMC12838360,11,racx-011,pubchem:5951,family-0024,True,1,racx-wt,gseq-000187,3475dce5765383c2e4bc636c630621b848be85066a09a8f29356680ea8cb90da,gseq-000192
|
| 189 |
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|
| 190 |
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|
| 191 |
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|
| 192 |
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europepmc-PMC12838360,15,racx-015,pubchem:145742,family-0024,True,1,racx-wt,gseq-000191,3475dce5765383c2e4bc636c630621b848be85066a09a8f29356680ea8cb90da,gseq-000192
|
| 193 |
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europepmc-PMC12838360,16,racx-016,pubchem:57449,family-0024,True,1,racx-wt,gseq-000192,3475dce5765383c2e4bc636c630621b848be85066a09a8f29356680ea8cb90da,gseq-000192
|
| 194 |
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europepmc-PMC12838360,17,racx-017,pubchem:5962,family-0024,True,1,racx-a79c,gseq-000193,048c34d38da39dc075afa63c37d30b6dcef8960e5cc429399fa42bfff5f1a65a,gseq-000192
|
| 195 |
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europepmc-PMC12838360,18,racx-018,pubchem:57449,family-0024,True,1,racx-a79c,gseq-000194,048c34d38da39dc075afa63c37d30b6dcef8960e5cc429399fa42bfff5f1a65a,gseq-000192
|
| 196 |
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europepmc-PMC12838360,19,racx-019,pubchem:5962,family-0024,True,1,racx-c193s,gseq-000195,42da89c45570259be238930bcf1d7fe2bb4ac355e0d4fe267681086d22bbb532,gseq-000192
|
| 197 |
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|
| 198 |
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zenodo-14055918,1,lrrk2-001,pubchem:135398633,family-0025,True,1,lrrk2-wt,gseq-000197,f6fea4a0ecf23ce4fe6deaf1145f7085b09640114bfa8d09ccfef82af66d534a,gseq-000203
|
| 199 |
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zenodo-14055918,2,lrrk2-002,pubchem:135398633,family-0025,True,1,lrrk2-wt,gseq-000198,f6fea4a0ecf23ce4fe6deaf1145f7085b09640114bfa8d09ccfef82af66d534a,gseq-000203
|
| 200 |
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zenodo-14055918,3,lrrk2-003,pubchem:135398633,family-0025,True,1,lrrk2-r1441g,gseq-000199,914c74ca762518944f8efe364e37d8242e3324f7bc0c7321e42e2680c18131a8,gseq-000203
|
| 201 |
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zenodo-14055918,4,lrrk2-004,pubchem:135398633,family-0025,True,1,lrrk2-g2019s,gseq-000200,6b23e3ffb867845bb9ebe103fd9b2304db2c2f44ec1dfa4f77c78b272b9f039f,gseq-000203
|
| 202 |
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zenodo-14055918,5,lrrk2-005,pubchem:135398633,family-0025,True,1,lrrk2-k1906m,gseq-000201,e51ed98f79f86f3c06ca771680f59977e8812b856d41bff48b8aaf237fe735c7,gseq-000203
|
| 203 |
+
zenodo-14055918,6,lrrk2-006,pubchem:135398633,family-0025,True,1,lrrk2-t1343a,gseq-000202,c470e8c25cf188bbca94a37862b64b1ec3c35103d3c676f90bae34a07ce799f3,gseq-000203
|
| 204 |
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zenodo-14055918,7,lrrk2-007,pubchem:135398633,family-0025,True,1,lrrk2-t1343a,gseq-000203,c470e8c25cf188bbca94a37862b64b1ec3c35103d3c676f90bae34a07ce799f3,gseq-000203
|
data/temporal/readiness-audit.json
ADDED
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"artifacts": {
|
| 3 |
+
"global_fasta": "artifacts\\external\\temporal-global-family-audit\\global-accepted-components.fasta",
|
| 4 |
+
"global_fasta_sha256": "0e631ed695ec3bd9fcd17fc3b91b67cc26b21a5980eb5377bfce40e53f42695b",
|
| 5 |
+
"mapping_manifest": "artifacts\\external\\temporal-global-family-audit\\global-accepted-mapping.csv",
|
| 6 |
+
"mapping_manifest_sha256": "54226ec20c18f296b789d20fa52642174317dfbd93492428ad3b9ae3aefedf48"
|
| 7 |
+
},
|
| 8 |
+
"blockers": [
|
| 9 |
+
"capped records 192 < required 300",
|
| 10 |
+
"global families 25 < required 30"
|
| 11 |
+
],
|
| 12 |
+
"claim_boundary": "Readiness audit only; no model predictions or scores were generated.",
|
| 13 |
+
"counts": {
|
| 14 |
+
"accepted_sources": 18,
|
| 15 |
+
"excluded_or_unresolved_sources": 0,
|
| 16 |
+
"global_families": 25,
|
| 17 |
+
"mapped_component_sequences": 203,
|
| 18 |
+
"mapped_records_before_cap": 192,
|
| 19 |
+
"records_after_global_family_cap": 192,
|
| 20 |
+
"substrates_after_global_family_cap": 54
|
| 21 |
+
},
|
| 22 |
+
"family_record_counts_before_cap": {
|
| 23 |
+
"family-0001": 8,
|
| 24 |
+
"family-0002": 8,
|
| 25 |
+
"family-0003": 4,
|
| 26 |
+
"family-0004": 4,
|
| 27 |
+
"family-0005": 15,
|
| 28 |
+
"family-0006": 6,
|
| 29 |
+
"family-0007": 3,
|
| 30 |
+
"family-0008": 4,
|
| 31 |
+
"family-0009": 2,
|
| 32 |
+
"family-0010": 19,
|
| 33 |
+
"family-0011": 4,
|
| 34 |
+
"family-0012": 3,
|
| 35 |
+
"family-0013": 2,
|
| 36 |
+
"family-0014": 2,
|
| 37 |
+
"family-0015": 8,
|
| 38 |
+
"family-0016": 1,
|
| 39 |
+
"family-0017": 1,
|
| 40 |
+
"family-0018": 20,
|
| 41 |
+
"family-0019": 16,
|
| 42 |
+
"family-0020": 8,
|
| 43 |
+
"family-0021": 5,
|
| 44 |
+
"family-0022": 4,
|
| 45 |
+
"family-0023": 18,
|
| 46 |
+
"family-0024": 20,
|
| 47 |
+
"family-0025": 7
|
| 48 |
+
},
|
| 49 |
+
"generated_on": "2026-07-27",
|
| 50 |
+
"mmseqs": {
|
| 51 |
+
"cluster_tsv": "artifacts\\external\\temporal-global-family-audit\\mmseqs\\proteins_cluster.tsv",
|
| 52 |
+
"cluster_tsv_sha256": "74fff00b5c9d75022d4826cefe5ed918b81f6187bda288e4b3716ea98c1218db",
|
| 53 |
+
"executable": "wsl:Ubuntu-24.04:<redacted-local-path>",
|
| 54 |
+
"observed_version": "5d152c612b6ad2a56f657b7a02c127eceaea2a75",
|
| 55 |
+
"required_version": "5d152c612b6ad2a56f657b7a02c127eceaea2a75"
|
| 56 |
+
},
|
| 57 |
+
"parameters": {
|
| 58 |
+
"cap_order": "source_id lexical order, then accepted CSV row order",
|
| 59 |
+
"cap_uses_labels": false,
|
| 60 |
+
"coverage": 0.8,
|
| 61 |
+
"coverage_mode": 0,
|
| 62 |
+
"maximum_records_per_family": 20,
|
| 63 |
+
"min_identity": 0.3,
|
| 64 |
+
"multicomponent_rule": "records are connected when any components share a global MMseqs cluster"
|
| 65 |
+
},
|
| 66 |
+
"readiness_gate_passes": false,
|
| 67 |
+
"schema_version": 1,
|
| 68 |
+
"sources": [
|
| 69 |
+
{
|
| 70 |
+
"blockers": [],
|
| 71 |
+
"finalized_accepted_records": 8,
|
| 72 |
+
"mapped_records": 8,
|
| 73 |
+
"mapping_columns": [
|
| 74 |
+
"component_sequence_ids"
|
| 75 |
+
],
|
| 76 |
+
"source_id": "biostudies-S-EPMC10795190"
|
| 77 |
+
},
|
| 78 |
+
{
|
| 79 |
+
"blockers": [],
|
| 80 |
+
"finalized_accepted_records": 8,
|
| 81 |
+
"mapped_records": 8,
|
| 82 |
+
"mapping_columns": [
|
| 83 |
+
"chain_a_sequence_id",
|
| 84 |
+
"chain_b_sequence_id"
|
| 85 |
+
],
|
| 86 |
+
"source_id": "biostudies-S-EPMC11760959"
|
| 87 |
+
},
|
| 88 |
+
{
|
| 89 |
+
"blockers": [],
|
| 90 |
+
"finalized_accepted_records": 4,
|
| 91 |
+
"mapped_records": 4,
|
| 92 |
+
"mapping_columns": [
|
| 93 |
+
"sequence_id"
|
| 94 |
+
],
|
| 95 |
+
"source_id": "biostudies-S-EPMC11955521"
|
| 96 |
+
},
|
| 97 |
+
{
|
| 98 |
+
"blockers": [],
|
| 99 |
+
"finalized_accepted_records": 4,
|
| 100 |
+
"mapped_records": 4,
|
| 101 |
+
"mapping_columns": [
|
| 102 |
+
"sequence_id"
|
| 103 |
+
],
|
| 104 |
+
"source_id": "biostudies-S-EPMC12412097"
|
| 105 |
+
},
|
| 106 |
+
{
|
| 107 |
+
"blockers": [],
|
| 108 |
+
"finalized_accepted_records": 15,
|
| 109 |
+
"mapped_records": 15,
|
| 110 |
+
"mapping_columns": [
|
| 111 |
+
"uniprot_accession",
|
| 112 |
+
"variant"
|
| 113 |
+
],
|
| 114 |
+
"source_id": "biostudies-S-EPMC12645435"
|
| 115 |
+
},
|
| 116 |
+
{
|
| 117 |
+
"blockers": [],
|
| 118 |
+
"finalized_accepted_records": 9,
|
| 119 |
+
"mapped_records": 9,
|
| 120 |
+
"mapping_columns": [
|
| 121 |
+
"sequence_id"
|
| 122 |
+
],
|
| 123 |
+
"source_id": "biostudies-S-EPMC12667214"
|
| 124 |
+
},
|
| 125 |
+
{
|
| 126 |
+
"blockers": [],
|
| 127 |
+
"finalized_accepted_records": 4,
|
| 128 |
+
"mapped_records": 4,
|
| 129 |
+
"mapping_columns": [
|
| 130 |
+
"sequence_id"
|
| 131 |
+
],
|
| 132 |
+
"source_id": "biostudies-S-EPMC12751057"
|
| 133 |
+
},
|
| 134 |
+
{
|
| 135 |
+
"blockers": [],
|
| 136 |
+
"finalized_accepted_records": 2,
|
| 137 |
+
"mapped_records": 2,
|
| 138 |
+
"mapping_columns": [
|
| 139 |
+
"sequence_id"
|
| 140 |
+
],
|
| 141 |
+
"source_id": "biostudies-S-EPMC12781114"
|
| 142 |
+
},
|
| 143 |
+
{
|
| 144 |
+
"blockers": [],
|
| 145 |
+
"finalized_accepted_records": 19,
|
| 146 |
+
"mapped_records": 19,
|
| 147 |
+
"mapping_columns": [
|
| 148 |
+
"sequence_id"
|
| 149 |
+
],
|
| 150 |
+
"source_id": "biostudies-S-EPMC13033379"
|
| 151 |
+
},
|
| 152 |
+
{
|
| 153 |
+
"blockers": [],
|
| 154 |
+
"finalized_accepted_records": 4,
|
| 155 |
+
"mapped_records": 4,
|
| 156 |
+
"mapping_columns": [
|
| 157 |
+
"sequence_id"
|
| 158 |
+
],
|
| 159 |
+
"source_id": "edmond-S0HJ48"
|
| 160 |
+
},
|
| 161 |
+
{
|
| 162 |
+
"blockers": [],
|
| 163 |
+
"finalized_accepted_records": 17,
|
| 164 |
+
"mapped_records": 17,
|
| 165 |
+
"mapping_columns": [
|
| 166 |
+
"sequence_id"
|
| 167 |
+
],
|
| 168 |
+
"source_id": "europepmc-PMC10520331"
|
| 169 |
+
},
|
| 170 |
+
{
|
| 171 |
+
"blockers": [],
|
| 172 |
+
"finalized_accepted_records": 20,
|
| 173 |
+
"mapped_records": 20,
|
| 174 |
+
"mapping_columns": [
|
| 175 |
+
"sequence_id"
|
| 176 |
+
],
|
| 177 |
+
"source_id": "europepmc-PMC11656708"
|
| 178 |
+
},
|
| 179 |
+
{
|
| 180 |
+
"blockers": [],
|
| 181 |
+
"finalized_accepted_records": 24,
|
| 182 |
+
"mapped_records": 24,
|
| 183 |
+
"mapping_columns": [
|
| 184 |
+
"sequence_id"
|
| 185 |
+
],
|
| 186 |
+
"source_id": "europepmc-PMC11659886"
|
| 187 |
+
},
|
| 188 |
+
{
|
| 189 |
+
"blockers": [],
|
| 190 |
+
"finalized_accepted_records": 5,
|
| 191 |
+
"mapped_records": 5,
|
| 192 |
+
"mapping_columns": [
|
| 193 |
+
"sequence_id"
|
| 194 |
+
],
|
| 195 |
+
"source_id": "europepmc-PMC12284513"
|
| 196 |
+
},
|
| 197 |
+
{
|
| 198 |
+
"blockers": [],
|
| 199 |
+
"finalized_accepted_records": 4,
|
| 200 |
+
"mapped_records": 4,
|
| 201 |
+
"mapping_columns": [
|
| 202 |
+
"sequence_id"
|
| 203 |
+
],
|
| 204 |
+
"source_id": "europepmc-PMC12362431"
|
| 205 |
+
},
|
| 206 |
+
{
|
| 207 |
+
"blockers": [],
|
| 208 |
+
"finalized_accepted_records": 18,
|
| 209 |
+
"mapped_records": 18,
|
| 210 |
+
"mapping_columns": [
|
| 211 |
+
"sequence_id"
|
| 212 |
+
],
|
| 213 |
+
"source_id": "europepmc-PMC12444516"
|
| 214 |
+
},
|
| 215 |
+
{
|
| 216 |
+
"blockers": [],
|
| 217 |
+
"finalized_accepted_records": 20,
|
| 218 |
+
"mapped_records": 20,
|
| 219 |
+
"mapping_columns": [
|
| 220 |
+
"sequence_id"
|
| 221 |
+
],
|
| 222 |
+
"source_id": "europepmc-PMC12838360"
|
| 223 |
+
},
|
| 224 |
+
{
|
| 225 |
+
"blockers": [],
|
| 226 |
+
"finalized_accepted_records": 7,
|
| 227 |
+
"mapped_records": 7,
|
| 228 |
+
"mapping_columns": [
|
| 229 |
+
"sequence_id"
|
| 230 |
+
],
|
| 231 |
+
"source_id": "zenodo-14055918"
|
| 232 |
+
}
|
| 233 |
+
]
|
| 234 |
+
}
|
data/temporal/registry-readiness-audit.json
ADDED
|
@@ -0,0 +1,526 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
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|
|
|
|
|
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|
|
|
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|
|
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|
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|
|
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|
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|
|
|
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|
|
|
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|
|
|
|
|
|
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|
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|
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|
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|
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|
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|
|
| 1 |
+
{
|
| 2 |
+
"schema_version": 2,
|
| 3 |
+
"generated_on": "2026-07-27",
|
| 4 |
+
"root": "artifacts/external/temporal-absolute-kinetics",
|
| 5 |
+
"protocol": "configs/temporal_absolute_kinetics_protocol.json",
|
| 6 |
+
"protocol_sha256": "a9ebdc022d77925ebdf32abd016e4ab09fae6a1ab4421dde7bb675107742e36f",
|
| 7 |
+
"accepted_status": "accepted_homology_cold_pool",
|
| 8 |
+
"substrate_identity_policy": "PubChem CID of the varied, measured substrate",
|
| 9 |
+
"family_policy": "none",
|
| 10 |
+
"family_policy_note": "not reported; select an explicit family policy",
|
| 11 |
+
"registry_readiness_policy": {
|
| 12 |
+
"finalized_zero_candidate_sources_must_pass_evidence_checks": false
|
| 13 |
+
},
|
| 14 |
+
"source_summary": {
|
| 15 |
+
"accepted_pool_sources": 18,
|
| 16 |
+
"pending_sources": 0,
|
| 17 |
+
"finalized_zero_candidate_sources": 28,
|
| 18 |
+
"unresolved_zero_candidate_sources": 0,
|
| 19 |
+
"nonblocking_source_issues": 21
|
| 20 |
+
},
|
| 21 |
+
"counts": {
|
| 22 |
+
"accepted_records": 192,
|
| 23 |
+
"globally_unique_substrates": 54,
|
| 24 |
+
"families": null
|
| 25 |
+
},
|
| 26 |
+
"readiness_gate_passes": false,
|
| 27 |
+
"blockers": [
|
| 28 |
+
"accepted records 192 < required 300",
|
| 29 |
+
"global family readiness gate cannot be evaluated"
|
| 30 |
+
],
|
| 31 |
+
"sources": [
|
| 32 |
+
{
|
| 33 |
+
"source_id": "biostudies-S-EPMC10589216",
|
| 34 |
+
"candidate_records": 0,
|
| 35 |
+
"csv_accepted_records": 0,
|
| 36 |
+
"pending_records": 0,
|
| 37 |
+
"accepted_evidence_final": true,
|
| 38 |
+
"disposition": "finalized_zero_candidate_source",
|
| 39 |
+
"blocks_accepted_pool_readiness": false,
|
| 40 |
+
"issues": []
|
| 41 |
+
},
|
| 42 |
+
{
|
| 43 |
+
"source_id": "biostudies-S-EPMC10795190",
|
| 44 |
+
"candidate_records": 9,
|
| 45 |
+
"csv_accepted_records": 8,
|
| 46 |
+
"pending_records": 0,
|
| 47 |
+
"accepted_evidence_final": true,
|
| 48 |
+
"disposition": "accepted_pool_source",
|
| 49 |
+
"blocks_accepted_pool_readiness": true,
|
| 50 |
+
"issues": []
|
| 51 |
+
},
|
| 52 |
+
{
|
| 53 |
+
"source_id": "biostudies-S-EPMC11705230",
|
| 54 |
+
"candidate_records": 0,
|
| 55 |
+
"csv_accepted_records": 0,
|
| 56 |
+
"pending_records": 0,
|
| 57 |
+
"accepted_evidence_final": true,
|
| 58 |
+
"disposition": "finalized_zero_candidate_source",
|
| 59 |
+
"blocks_accepted_pool_readiness": false,
|
| 60 |
+
"issues": []
|
| 61 |
+
},
|
| 62 |
+
{
|
| 63 |
+
"source_id": "biostudies-S-EPMC11742315",
|
| 64 |
+
"candidate_records": 0,
|
| 65 |
+
"csv_accepted_records": 0,
|
| 66 |
+
"pending_records": 0,
|
| 67 |
+
"accepted_evidence_final": true,
|
| 68 |
+
"disposition": "finalized_zero_candidate_source",
|
| 69 |
+
"blocks_accepted_pool_readiness": false,
|
| 70 |
+
"issues": []
|
| 71 |
+
},
|
| 72 |
+
{
|
| 73 |
+
"source_id": "biostudies-S-EPMC11760959",
|
| 74 |
+
"candidate_records": 8,
|
| 75 |
+
"csv_accepted_records": 8,
|
| 76 |
+
"pending_records": 0,
|
| 77 |
+
"accepted_evidence_final": true,
|
| 78 |
+
"disposition": "accepted_pool_source",
|
| 79 |
+
"blocks_accepted_pool_readiness": true,
|
| 80 |
+
"issues": []
|
| 81 |
+
},
|
| 82 |
+
{
|
| 83 |
+
"source_id": "biostudies-S-EPMC11955521",
|
| 84 |
+
"candidate_records": 32,
|
| 85 |
+
"csv_accepted_records": 4,
|
| 86 |
+
"pending_records": 0,
|
| 87 |
+
"accepted_evidence_final": true,
|
| 88 |
+
"disposition": "accepted_pool_source",
|
| 89 |
+
"blocks_accepted_pool_readiness": true,
|
| 90 |
+
"issues": []
|
| 91 |
+
},
|
| 92 |
+
{
|
| 93 |
+
"source_id": "biostudies-S-EPMC12267109",
|
| 94 |
+
"candidate_records": 0,
|
| 95 |
+
"csv_accepted_records": 0,
|
| 96 |
+
"pending_records": 0,
|
| 97 |
+
"accepted_evidence_final": true,
|
| 98 |
+
"disposition": "finalized_zero_candidate_source",
|
| 99 |
+
"blocks_accepted_pool_readiness": false,
|
| 100 |
+
"issues": []
|
| 101 |
+
},
|
| 102 |
+
{
|
| 103 |
+
"source_id": "biostudies-S-EPMC12364357",
|
| 104 |
+
"candidate_records": 1,
|
| 105 |
+
"csv_accepted_records": 0,
|
| 106 |
+
"pending_records": 0,
|
| 107 |
+
"accepted_evidence_final": true,
|
| 108 |
+
"disposition": "finalized_zero_candidate_source",
|
| 109 |
+
"blocks_accepted_pool_readiness": false,
|
| 110 |
+
"issues": []
|
| 111 |
+
},
|
| 112 |
+
{
|
| 113 |
+
"source_id": "biostudies-S-EPMC12412097",
|
| 114 |
+
"candidate_records": 4,
|
| 115 |
+
"csv_accepted_records": 4,
|
| 116 |
+
"pending_records": 0,
|
| 117 |
+
"accepted_evidence_final": true,
|
| 118 |
+
"disposition": "accepted_pool_source",
|
| 119 |
+
"blocks_accepted_pool_readiness": true,
|
| 120 |
+
"issues": []
|
| 121 |
+
},
|
| 122 |
+
{
|
| 123 |
+
"source_id": "biostudies-S-EPMC12645435",
|
| 124 |
+
"candidate_records": 15,
|
| 125 |
+
"csv_accepted_records": 15,
|
| 126 |
+
"pending_records": 0,
|
| 127 |
+
"accepted_evidence_final": true,
|
| 128 |
+
"disposition": "accepted_pool_source",
|
| 129 |
+
"blocks_accepted_pool_readiness": true,
|
| 130 |
+
"issues": []
|
| 131 |
+
},
|
| 132 |
+
{
|
| 133 |
+
"source_id": "biostudies-S-EPMC12667214",
|
| 134 |
+
"candidate_records": 27,
|
| 135 |
+
"csv_accepted_records": 9,
|
| 136 |
+
"pending_records": 0,
|
| 137 |
+
"accepted_evidence_final": true,
|
| 138 |
+
"disposition": "accepted_pool_source",
|
| 139 |
+
"blocks_accepted_pool_readiness": true,
|
| 140 |
+
"issues": []
|
| 141 |
+
},
|
| 142 |
+
{
|
| 143 |
+
"source_id": "biostudies-S-EPMC12751057",
|
| 144 |
+
"candidate_records": 4,
|
| 145 |
+
"csv_accepted_records": 4,
|
| 146 |
+
"pending_records": 0,
|
| 147 |
+
"accepted_evidence_final": true,
|
| 148 |
+
"disposition": "accepted_pool_source",
|
| 149 |
+
"blocks_accepted_pool_readiness": true,
|
| 150 |
+
"issues": []
|
| 151 |
+
},
|
| 152 |
+
{
|
| 153 |
+
"source_id": "biostudies-S-EPMC12781114",
|
| 154 |
+
"candidate_records": 2,
|
| 155 |
+
"csv_accepted_records": 2,
|
| 156 |
+
"pending_records": 0,
|
| 157 |
+
"accepted_evidence_final": true,
|
| 158 |
+
"disposition": "accepted_pool_source",
|
| 159 |
+
"blocks_accepted_pool_readiness": true,
|
| 160 |
+
"issues": []
|
| 161 |
+
},
|
| 162 |
+
{
|
| 163 |
+
"source_id": "biostudies-S-EPMC12959137",
|
| 164 |
+
"candidate_records": 0,
|
| 165 |
+
"csv_accepted_records": 0,
|
| 166 |
+
"pending_records": 0,
|
| 167 |
+
"accepted_evidence_final": false,
|
| 168 |
+
"disposition": "finalized_zero_candidate_source",
|
| 169 |
+
"blocks_accepted_pool_readiness": false,
|
| 170 |
+
"issues": [
|
| 171 |
+
"audit candidate count does not match CSV"
|
| 172 |
+
]
|
| 173 |
+
},
|
| 174 |
+
{
|
| 175 |
+
"source_id": "biostudies-S-EPMC12961738",
|
| 176 |
+
"candidate_records": 108,
|
| 177 |
+
"csv_accepted_records": 0,
|
| 178 |
+
"pending_records": 0,
|
| 179 |
+
"accepted_evidence_final": true,
|
| 180 |
+
"disposition": "finalized_zero_candidate_source",
|
| 181 |
+
"blocks_accepted_pool_readiness": false,
|
| 182 |
+
"issues": []
|
| 183 |
+
},
|
| 184 |
+
{
|
| 185 |
+
"source_id": "biostudies-S-EPMC13033379",
|
| 186 |
+
"candidate_records": 24,
|
| 187 |
+
"csv_accepted_records": 19,
|
| 188 |
+
"pending_records": 0,
|
| 189 |
+
"accepted_evidence_final": true,
|
| 190 |
+
"disposition": "accepted_pool_source",
|
| 191 |
+
"blocks_accepted_pool_readiness": true,
|
| 192 |
+
"issues": []
|
| 193 |
+
},
|
| 194 |
+
{
|
| 195 |
+
"source_id": "biostudies-S-EPMC13223937",
|
| 196 |
+
"candidate_records": 0,
|
| 197 |
+
"csv_accepted_records": 0,
|
| 198 |
+
"pending_records": 0,
|
| 199 |
+
"accepted_evidence_final": false,
|
| 200 |
+
"disposition": "finalized_zero_candidate_source",
|
| 201 |
+
"blocks_accepted_pool_readiness": false,
|
| 202 |
+
"issues": [
|
| 203 |
+
"audit candidate count does not match CSV"
|
| 204 |
+
]
|
| 205 |
+
},
|
| 206 |
+
{
|
| 207 |
+
"source_id": "dryad-ncjsxkt6b",
|
| 208 |
+
"candidate_records": 12,
|
| 209 |
+
"csv_accepted_records": 0,
|
| 210 |
+
"pending_records": 0,
|
| 211 |
+
"accepted_evidence_final": false,
|
| 212 |
+
"disposition": "finalized_zero_candidate_source",
|
| 213 |
+
"blocks_accepted_pool_readiness": false,
|
| 214 |
+
"issues": [
|
| 215 |
+
"audit lacks candidate/query sequence SHA256"
|
| 216 |
+
]
|
| 217 |
+
},
|
| 218 |
+
{
|
| 219 |
+
"source_id": "edmond-S0HJ48",
|
| 220 |
+
"candidate_records": 20,
|
| 221 |
+
"csv_accepted_records": 4,
|
| 222 |
+
"pending_records": 0,
|
| 223 |
+
"accepted_evidence_final": true,
|
| 224 |
+
"disposition": "accepted_pool_source",
|
| 225 |
+
"blocks_accepted_pool_readiness": true,
|
| 226 |
+
"issues": []
|
| 227 |
+
},
|
| 228 |
+
{
|
| 229 |
+
"source_id": "europepmc-PMC10520331",
|
| 230 |
+
"candidate_records": 17,
|
| 231 |
+
"csv_accepted_records": 17,
|
| 232 |
+
"pending_records": 0,
|
| 233 |
+
"accepted_evidence_final": true,
|
| 234 |
+
"disposition": "accepted_pool_source",
|
| 235 |
+
"blocks_accepted_pool_readiness": true,
|
| 236 |
+
"issues": []
|
| 237 |
+
},
|
| 238 |
+
{
|
| 239 |
+
"source_id": "europepmc-PMC10620931",
|
| 240 |
+
"candidate_records": 0,
|
| 241 |
+
"csv_accepted_records": 0,
|
| 242 |
+
"pending_records": 0,
|
| 243 |
+
"accepted_evidence_final": false,
|
| 244 |
+
"disposition": "finalized_zero_candidate_source",
|
| 245 |
+
"blocks_accepted_pool_readiness": false,
|
| 246 |
+
"issues": [
|
| 247 |
+
"audit lacks candidate/query sequence SHA256",
|
| 248 |
+
"audit lacks homology-hit evidence SHA256"
|
| 249 |
+
]
|
| 250 |
+
},
|
| 251 |
+
{
|
| 252 |
+
"source_id": "europepmc-PMC11041685",
|
| 253 |
+
"candidate_records": 4,
|
| 254 |
+
"csv_accepted_records": 0,
|
| 255 |
+
"pending_records": 0,
|
| 256 |
+
"accepted_evidence_final": true,
|
| 257 |
+
"disposition": "finalized_zero_candidate_source",
|
| 258 |
+
"blocks_accepted_pool_readiness": false,
|
| 259 |
+
"issues": []
|
| 260 |
+
},
|
| 261 |
+
{
|
| 262 |
+
"source_id": "europepmc-PMC11656708",
|
| 263 |
+
"candidate_records": 39,
|
| 264 |
+
"csv_accepted_records": 20,
|
| 265 |
+
"pending_records": 0,
|
| 266 |
+
"accepted_evidence_final": true,
|
| 267 |
+
"disposition": "accepted_pool_source",
|
| 268 |
+
"blocks_accepted_pool_readiness": true,
|
| 269 |
+
"issues": []
|
| 270 |
+
},
|
| 271 |
+
{
|
| 272 |
+
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|
| 273 |
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|
| 274 |
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|
| 275 |
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|
| 276 |
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|
| 277 |
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"disposition": "accepted_pool_source",
|
| 278 |
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"blocks_accepted_pool_readiness": true,
|
| 279 |
+
"issues": []
|
| 280 |
+
},
|
| 281 |
+
{
|
| 282 |
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"source_id": "europepmc-PMC12028538",
|
| 283 |
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|
| 284 |
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|
| 285 |
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|
| 286 |
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|
| 287 |
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|
| 288 |
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|
| 289 |
+
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|
| 290 |
+
},
|
| 291 |
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{
|
| 292 |
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|
| 293 |
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|
| 294 |
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|
| 295 |
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|
| 296 |
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|
| 297 |
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"disposition": "finalized_zero_candidate_source",
|
| 298 |
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|
| 299 |
+
"issues": [
|
| 300 |
+
"audit candidate count does not match CSV"
|
| 301 |
+
]
|
| 302 |
+
},
|
| 303 |
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{
|
| 304 |
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"source_id": "europepmc-PMC12284513",
|
| 305 |
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|
| 306 |
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|
| 307 |
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|
| 308 |
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|
| 309 |
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|
| 310 |
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|
| 311 |
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"issues": []
|
| 312 |
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},
|
| 313 |
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{
|
| 314 |
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"source_id": "europepmc-PMC12329711",
|
| 315 |
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|
| 316 |
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|
| 317 |
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|
| 318 |
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|
| 319 |
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"disposition": "finalized_zero_candidate_source",
|
| 320 |
+
"blocks_accepted_pool_readiness": false,
|
| 321 |
+
"issues": []
|
| 322 |
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},
|
| 323 |
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{
|
| 324 |
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"source_id": "europepmc-PMC12362431",
|
| 325 |
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|
| 326 |
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|
| 327 |
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|
| 328 |
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|
| 329 |
+
"disposition": "accepted_pool_source",
|
| 330 |
+
"blocks_accepted_pool_readiness": true,
|
| 331 |
+
"issues": []
|
| 332 |
+
},
|
| 333 |
+
{
|
| 334 |
+
"source_id": "europepmc-PMC12444516",
|
| 335 |
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|
| 336 |
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|
| 337 |
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|
| 338 |
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|
| 339 |
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|
| 340 |
+
"blocks_accepted_pool_readiness": true,
|
| 341 |
+
"issues": []
|
| 342 |
+
},
|
| 343 |
+
{
|
| 344 |
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"source_id": "europepmc-PMC12529880",
|
| 345 |
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|
| 346 |
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|
| 347 |
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|
| 348 |
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|
| 349 |
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"disposition": "finalized_zero_candidate_source",
|
| 350 |
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"blocks_accepted_pool_readiness": false,
|
| 351 |
+
"issues": [
|
| 352 |
+
"audit candidate count does not match CSV"
|
| 353 |
+
]
|
| 354 |
+
},
|
| 355 |
+
{
|
| 356 |
+
"source_id": "europepmc-PMC12594388",
|
| 357 |
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|
| 358 |
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|
| 359 |
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|
| 360 |
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"accepted_evidence_final": true,
|
| 361 |
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"disposition": "finalized_zero_candidate_source",
|
| 362 |
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"blocks_accepted_pool_readiness": false,
|
| 363 |
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"issues": []
|
| 364 |
+
},
|
| 365 |
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{
|
| 366 |
+
"source_id": "europepmc-PMC12676663",
|
| 367 |
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"candidate_records": 2,
|
| 368 |
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|
| 369 |
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|
| 370 |
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"accepted_evidence_final": true,
|
| 371 |
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"disposition": "finalized_zero_candidate_source",
|
| 372 |
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"blocks_accepted_pool_readiness": false,
|
| 373 |
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"issues": []
|
| 374 |
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},
|
| 375 |
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{
|
| 376 |
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"source_id": "europepmc-PMC12697855",
|
| 377 |
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|
| 378 |
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|
| 379 |
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|
| 380 |
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"accepted_evidence_final": true,
|
| 381 |
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"disposition": "finalized_zero_candidate_source",
|
| 382 |
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"blocks_accepted_pool_readiness": false,
|
| 383 |
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"issues": []
|
| 384 |
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},
|
| 385 |
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{
|
| 386 |
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"source_id": "europepmc-PMC12817470",
|
| 387 |
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|
| 388 |
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|
| 389 |
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|
| 390 |
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|
| 391 |
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"disposition": "finalized_zero_candidate_source",
|
| 392 |
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"blocks_accepted_pool_readiness": false,
|
| 393 |
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"issues": []
|
| 394 |
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},
|
| 395 |
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{
|
| 396 |
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"source_id": "europepmc-PMC12838360",
|
| 397 |
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|
| 398 |
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|
| 399 |
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|
| 400 |
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|
| 401 |
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"disposition": "accepted_pool_source",
|
| 402 |
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"blocks_accepted_pool_readiness": true,
|
| 403 |
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"issues": []
|
| 404 |
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},
|
| 405 |
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{
|
| 406 |
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"source_id": "europepmc-PMC12894115",
|
| 407 |
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|
| 408 |
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|
| 409 |
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|
| 410 |
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|
| 411 |
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"disposition": "finalized_zero_candidate_source",
|
| 412 |
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"blocks_accepted_pool_readiness": false,
|
| 413 |
+
"issues": [
|
| 414 |
+
"audit lacks an accepted-record count",
|
| 415 |
+
"audit lacks candidate/query sequence SHA256"
|
| 416 |
+
]
|
| 417 |
+
},
|
| 418 |
+
{
|
| 419 |
+
"source_id": "europepmc-PMC12958101",
|
| 420 |
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|
| 421 |
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|
| 422 |
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|
| 423 |
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|
| 424 |
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|
| 425 |
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"blocks_accepted_pool_readiness": false,
|
| 426 |
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"issues": []
|
| 427 |
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},
|
| 428 |
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{
|
| 429 |
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"source_id": "europepmc-PMC12995904",
|
| 430 |
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|
| 431 |
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|
| 432 |
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|
| 433 |
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|
| 434 |
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"disposition": "finalized_zero_candidate_source",
|
| 435 |
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"blocks_accepted_pool_readiness": false,
|
| 436 |
+
"issues": [
|
| 437 |
+
"missing candidate_records.csv"
|
| 438 |
+
]
|
| 439 |
+
},
|
| 440 |
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{
|
| 441 |
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"source_id": "europepmc-PMC13148043",
|
| 442 |
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|
| 443 |
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|
| 444 |
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|
| 445 |
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|
| 446 |
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"disposition": "finalized_zero_candidate_source",
|
| 447 |
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"blocks_accepted_pool_readiness": false,
|
| 448 |
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"issues": []
|
| 449 |
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},
|
| 450 |
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{
|
| 451 |
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"source_id": "europepmc-PMC13151041",
|
| 452 |
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|
| 453 |
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|
| 454 |
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|
| 455 |
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|
| 456 |
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"disposition": "finalized_zero_candidate_source",
|
| 457 |
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"blocks_accepted_pool_readiness": false,
|
| 458 |
+
"issues": [
|
| 459 |
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"audit candidate count does not match CSV"
|
| 460 |
+
]
|
| 461 |
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},
|
| 462 |
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{
|
| 463 |
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"source_id": "europepmc-PMC13210114",
|
| 464 |
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|
| 465 |
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|
| 466 |
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|
| 467 |
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|
| 468 |
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"disposition": "finalized_zero_candidate_source",
|
| 469 |
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|
| 470 |
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"issues": []
|
| 471 |
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},
|
| 472 |
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{
|
| 473 |
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"source_id": "europepmc-PMC13230308",
|
| 474 |
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|
| 475 |
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|
| 476 |
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|
| 477 |
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|
| 478 |
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"disposition": "finalized_zero_candidate_source",
|
| 479 |
+
"blocks_accepted_pool_readiness": false,
|
| 480 |
+
"issues": []
|
| 481 |
+
},
|
| 482 |
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{
|
| 483 |
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"source_id": "purdue-429k-qe94",
|
| 484 |
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|
| 485 |
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|
| 486 |
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|
| 487 |
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|
| 488 |
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"disposition": "finalized_zero_candidate_source",
|
| 489 |
+
"blocks_accepted_pool_readiness": false,
|
| 490 |
+
"issues": [
|
| 491 |
+
"missing candidate_records.csv",
|
| 492 |
+
"audit candidate count does not match CSV",
|
| 493 |
+
"audit lacks an accepted-record count",
|
| 494 |
+
"audit lacks MMseqs method/version",
|
| 495 |
+
"audit lacks candidate/query sequence SHA256",
|
| 496 |
+
"audit lacks homology-hit evidence SHA256"
|
| 497 |
+
]
|
| 498 |
+
},
|
| 499 |
+
{
|
| 500 |
+
"source_id": "zenodo-10517668",
|
| 501 |
+
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|
| 502 |
+
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|
| 503 |
+
"pending_records": 0,
|
| 504 |
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"accepted_evidence_final": false,
|
| 505 |
+
"disposition": "finalized_zero_candidate_source",
|
| 506 |
+
"blocks_accepted_pool_readiness": false,
|
| 507 |
+
"issues": [
|
| 508 |
+
"missing candidate_records.csv",
|
| 509 |
+
"audit source_id does not match directory",
|
| 510 |
+
"audit candidate count does not match CSV",
|
| 511 |
+
"audit lacks candidate/query sequence SHA256"
|
| 512 |
+
]
|
| 513 |
+
},
|
| 514 |
+
{
|
| 515 |
+
"source_id": "zenodo-14055918",
|
| 516 |
+
"candidate_records": 7,
|
| 517 |
+
"csv_accepted_records": 7,
|
| 518 |
+
"pending_records": 0,
|
| 519 |
+
"accepted_evidence_final": true,
|
| 520 |
+
"disposition": "accepted_pool_source",
|
| 521 |
+
"blocks_accepted_pool_readiness": true,
|
| 522 |
+
"issues": []
|
| 523 |
+
}
|
| 524 |
+
],
|
| 525 |
+
"claim_boundary": "Curation pool only; no model predictions were generated."
|
| 526 |
+
}
|
data/uncertainty-calibration-v2/grouped-cv.json
ADDED
|
@@ -0,0 +1,1722 @@
|
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data/unikp-km-training-blocker-audit.json
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@@ -0,0 +1,295 @@
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|
| 1 |
+
{
|
| 2 |
+
"schema_version": "1.0.0",
|
| 3 |
+
"audit_date": "2026-07-27",
|
| 4 |
+
"task": "BioCandidateRanker absolute Km training from local UniKP assets",
|
| 5 |
+
"status": "blocked",
|
| 6 |
+
"decision": {
|
| 7 |
+
"training_performed": false,
|
| 8 |
+
"adapter_written": false,
|
| 9 |
+
"normalized_jsonl_written": false,
|
| 10 |
+
"split_written": false,
|
| 11 |
+
"checkpoint_written": false,
|
| 12 |
+
"external_benchmark_scoring_performed": false,
|
| 13 |
+
"reason_code": "OPAQUE_TEST_PICKLE_WITH_UNRESOLVED_ROW_PROVENANCE_UNITS_LICENSE_AND_SPLIT",
|
| 14 |
+
"summary": "The only local UniKP Km labels are in an upstream test-named pandas pickle. The object has usable sequences, SMILES, and finite log10_KM values, but lacks row-level measurement provenance, source units, assay metadata, direct-measurement flags, and frozen split membership. Conflicting license signals and the inability to connect each transformed row to a governed source measurement prevent conversion to BioCandidateRanker's strict direct-kinetics schema.",
|
| 15 |
+
"claim_boundary": "No model prediction was used as a label. The pretrained UniKP Km model is an inference artifact and was excluded as a label source. No Km training or evaluation was run."
|
| 16 |
+
},
|
| 17 |
+
"search_scope": {
|
| 18 |
+
"roots": [
|
| 19 |
+
"<redacted-local-path>",
|
| 20 |
+
"<redacted-local-path> model prediction\\Integrated_Yeast_MetaTwin_Deployment\\04_prediction_plugins\\UniKP",
|
| 21 |
+
"<redacted-local-path> model prediction\\Integrated_Yeast_MetaTwin_Deployment - \u526f\u672c",
|
| 22 |
+
"<redacted-local-path> model prediction\\Yeast-MetaTwin",
|
| 23 |
+
"<redacted-local-path> model prediction\\Yeast-MetaTwin\\_backup_opencode_20260707_compat_fixes",
|
| 24 |
+
"<redacted-local-path> model prediction\\Yeast-MetaTwin\\_backup_opencode_20260707_eval_fixes",
|
| 25 |
+
"<redacted-local-path>"
|
| 26 |
+
],
|
| 27 |
+
"name_and_content_terms": [
|
| 28 |
+
"UniKP",
|
| 29 |
+
"unikp",
|
| 30 |
+
"Km_test_11722",
|
| 31 |
+
"log10_KM",
|
| 32 |
+
"UniKP for Km",
|
| 33 |
+
"Km_features_11722",
|
| 34 |
+
"kcat_km_samples"
|
| 35 |
+
],
|
| 36 |
+
"result": "One local Km label object was found. Other references resolve to the same deployed object, missing expected source assets, code copies, pretrained models, or prediction outputs."
|
| 37 |
+
},
|
| 38 |
+
"label_asset": {
|
| 39 |
+
"path": "<redacted-local-path> model prediction\\Integrated_Yeast_MetaTwin_Deployment\\04_prediction_plugins\\UniKP\\datasets\\Km_test_11722.pkl",
|
| 40 |
+
"exists": true,
|
| 41 |
+
"format": "Python pickle containing pandas.core.frame.DataFrame",
|
| 42 |
+
"pickle_security": "opaque executable serialization; inspected only in the existing isolated UniKP environment after identity hashing",
|
| 43 |
+
"size_bytes": 3295007,
|
| 44 |
+
"sha256": "10f565a6b369e374d15c872ce732630de80a06e89dac17256e62b1dfaa75a790",
|
| 45 |
+
"git_blob_sha1": "e668ff16a59f8143ce5f9aa972fae2894280e8a4",
|
| 46 |
+
"exact_upstream_blob_match": true,
|
| 47 |
+
"upstream_blob_url": "https://github.com/Luo-SynBioLab/UniKP/blob/3ad5576aaa2c8c0dd0e0b6c283c1d365ab23c6ea/datasets/Km_test_11722.pkl",
|
| 48 |
+
"object_shape": [
|
| 49 |
+
11722,
|
| 50 |
+
4
|
| 51 |
+
],
|
| 52 |
+
"columns": [
|
| 53 |
+
{
|
| 54 |
+
"name": "KEGG ID",
|
| 55 |
+
"semantic": "substrate KEGG compound identifier",
|
| 56 |
+
"dtype": "object",
|
| 57 |
+
"non_null": 11722,
|
| 58 |
+
"unique": 1580,
|
| 59 |
+
"minimum_string_length": 6,
|
| 60 |
+
"maximum_string_length": 6
|
| 61 |
+
},
|
| 62 |
+
{
|
| 63 |
+
"name": "Sequence",
|
| 64 |
+
"semantic": "amino-acid sequence used as a model input",
|
| 65 |
+
"dtype": "object",
|
| 66 |
+
"non_null": 11722,
|
| 67 |
+
"unique": 6990,
|
| 68 |
+
"minimum_length": 5,
|
| 69 |
+
"maximum_length": 7096,
|
| 70 |
+
"rows_with_characters_outside_ACDEFGHIKLMNPQRSTVWYBXZOUJ": 0
|
| 71 |
+
},
|
| 72 |
+
{
|
| 73 |
+
"name": "smiles",
|
| 74 |
+
"semantic": "substrate structure used as a model input",
|
| 75 |
+
"dtype": "object",
|
| 76 |
+
"non_null": 11722,
|
| 77 |
+
"unique": 1566,
|
| 78 |
+
"minimum_length": 1,
|
| 79 |
+
"maximum_length": 318,
|
| 80 |
+
"rdkit_parse_failures": 0,
|
| 81 |
+
"rdkit_canonical_unique": 1566,
|
| 82 |
+
"multi_component_rows": 1,
|
| 83 |
+
"rdkit_version": "2026.03.4"
|
| 84 |
+
},
|
| 85 |
+
{
|
| 86 |
+
"name": "log10_KM",
|
| 87 |
+
"semantic": "transformed Km label; physical source unit is not stored",
|
| 88 |
+
"dtype": "float64",
|
| 89 |
+
"non_null": 11722,
|
| 90 |
+
"finite": 11722,
|
| 91 |
+
"unique": 5224,
|
| 92 |
+
"minimum": -4.982966660701219,
|
| 93 |
+
"maximum": 3.929418925714293,
|
| 94 |
+
"mean": -0.7687990643747526
|
| 95 |
+
}
|
| 96 |
+
],
|
| 97 |
+
"absent_fields": [
|
| 98 |
+
"BRENDA accession or source row identifier",
|
| 99 |
+
"SABIO-RK accession",
|
| 100 |
+
"publication DOI or citation per measurement",
|
| 101 |
+
"experimental versus predicted label flag",
|
| 102 |
+
"original linear Km value",
|
| 103 |
+
"original and transformed Km unit",
|
| 104 |
+
"assay pH",
|
| 105 |
+
"assay temperature",
|
| 106 |
+
"buffer and other assay conditions",
|
| 107 |
+
"organism",
|
| 108 |
+
"EC number",
|
| 109 |
+
"protein accession",
|
| 110 |
+
"replicate or geometric-aggregation membership",
|
| 111 |
+
"train, validation, or test membership"
|
| 112 |
+
]
|
| 113 |
+
},
|
| 114 |
+
"data_quality_and_leakage_audit": {
|
| 115 |
+
"exact_duplicate_rows": 0,
|
| 116 |
+
"duplicate_sequence_smiles_rows": 24,
|
| 117 |
+
"sequence_smiles_pairs_with_conflicting_labels": 20,
|
| 118 |
+
"rows_repeating_a_sequence": 4732,
|
| 119 |
+
"sequences_with_multiple_labels": 3094,
|
| 120 |
+
"ordered_sequence_smiles_pair_sha256": "857c15b5a495a06b2ea48b3a9496c1b25c30b4324444e7b60561ba01b2752c53",
|
| 121 |
+
"split_semantics": {
|
| 122 |
+
"local_assignments_present": false,
|
| 123 |
+
"upstream_unikp_code": "Loads all 11,722 rows, chooses an unrecorded random seed with random.randint(0, 1000), then calls train_test_split(test_size=0.2).",
|
| 124 |
+
"upstream_unikp_paper": "Describes a random 80/20 training/test division of the 11,722 combinations.",
|
| 125 |
+
"source_kroll_paper": "Describes 11,675 complete BRENDA entries, geometric aggregation for repeated sequence-substrate measurements, a frozen 80/20 BRENDA split, and a separate 274-row SABIO-RK test.",
|
| 126 |
+
"conclusion": "The filename 'test' does not identify a protected local holdout. The local object is used as a full development corpus by UniKP code, and its rows cannot be mapped back to the Kroll train/test assignments. A random row split would allow repeated sequences and possibly repeated input pairs across partitions and is not leakage-aware."
|
| 127 |
+
},
|
| 128 |
+
"minimum_acceptable_future_split": "Resolve row identities and units first, aggregate or adjudicate conflicting sequence-SMILES labels without test access, reserve any original frozen tests, and assign sequence-homology clusters wholly to train, validation, or test."
|
| 129 |
+
},
|
| 130 |
+
"provenance": {
|
| 131 |
+
"immediate_source": {
|
| 132 |
+
"project": "Luo-SynBioLab/UniKP",
|
| 133 |
+
"repository": "https://github.com/Luo-SynBioLab/UniKP",
|
| 134 |
+
"audited_commit": "3ad5576aaa2c8c0dd0e0b6c283c1d365ab23c6ea",
|
| 135 |
+
"commit_date": "2025-12-30T04:43:18Z",
|
| 136 |
+
"paper_doi": "10.1038/s41467-023-44113-1",
|
| 137 |
+
"paper_statement": "The Km task uses a reported representative dataset from Kroll et al. with 11,722 natural enzyme-substrate combinations and corresponding Km values.",
|
| 138 |
+
"code_identity": {
|
| 139 |
+
"local_path": "<redacted-local-path> model prediction\\Integrated_Yeast_MetaTwin_Deployment\\04_prediction_plugins\\UniKP\\code\\UniKP_Km.py",
|
| 140 |
+
"size_bytes": 5305,
|
| 141 |
+
"sha256": "6a960f95fac50c2b194fd8dceaf50e1f7929e90fa5df84ef166607150514fc2e",
|
| 142 |
+
"git_blob_sha1": "6cf407268e03e6a8998d2d222c04d0699caae584",
|
| 143 |
+
"exact_upstream_blob_match": true
|
| 144 |
+
}
|
| 145 |
+
},
|
| 146 |
+
"reported_ultimate_source": {
|
| 147 |
+
"project": "AlexanderKroll/KM_prediction",
|
| 148 |
+
"repository": "https://github.com/AlexanderKroll/KM_prediction",
|
| 149 |
+
"paper_doi": "10.1371/journal.pbio.3001402",
|
| 150 |
+
"paper_statement": "Wild-type BRENDA measurements were joined to organism, EC, UniProt sequence, and substrate structure; repeated values for the same sequence-substrate combination were geometrically averaged and log10 transformed.",
|
| 151 |
+
"paper_row_count": 11675,
|
| 152 |
+
"local_unikp_row_count": 11722,
|
| 153 |
+
"row_count_reconciliation": "unresolved",
|
| 154 |
+
"paper_unit_evidence": "The Kroll article discusses Km values on a log10 scale and reports ranges in mM, but the local pickle itself does not bind log10_KM to a physical unit.",
|
| 155 |
+
"row_level_lineage_preserved_locally": false
|
| 156 |
+
},
|
| 157 |
+
"provenance_grade": "corpus-level attribution only; insufficient for strict direct-label conversion"
|
| 158 |
+
},
|
| 159 |
+
"license_audit": {
|
| 160 |
+
"unikp_github_commit": {
|
| 161 |
+
"license_file_present": false,
|
| 162 |
+
"readme_claim": "GNU General Public License version 3",
|
| 163 |
+
"status": "ambiguous because the commit tree has no license text and a README link alone does not resolve third-party dataset rights"
|
| 164 |
+
},
|
| 165 |
+
"unikp_zenodo_record": {
|
| 166 |
+
"doi": "10.5281/zenodo.10115498",
|
| 167 |
+
"record_type": "software",
|
| 168 |
+
"metadata_license": "CC BY 4.0",
|
| 169 |
+
"status": "conflicts with the GitHub README GPL-3.0 claim and does not provide row-level third-party source rights in the local pickle"
|
| 170 |
+
},
|
| 171 |
+
"kroll_repository": {
|
| 172 |
+
"repository": "https://github.com/AlexanderKroll/KM_prediction",
|
| 173 |
+
"detected_license": "MIT",
|
| 174 |
+
"license_file": "LICENSE.md",
|
| 175 |
+
"status": "governs the deposited software/materials but cannot by itself grant rights the authors did not hold in underlying BRENDA records"
|
| 176 |
+
},
|
| 177 |
+
"articles": {
|
| 178 |
+
"unikp_article": "CC BY 4.0",
|
| 179 |
+
"kroll_article": "CC BY 4.0",
|
| 180 |
+
"status": "article licenses do not automatically establish redistribution and derivative-training rights for database records"
|
| 181 |
+
},
|
| 182 |
+
"underlying_database": {
|
| 183 |
+
"name": "BRENDA",
|
| 184 |
+
"license_or_terms_captured_per_row": false,
|
| 185 |
+
"status": "unresolved in the local asset"
|
| 186 |
+
},
|
| 187 |
+
"legal_conclusion": "Training authorization and redistribution status are not sufficiently established for this transformed local pickle. This is an engineering governance conclusion, not legal advice."
|
| 188 |
+
},
|
| 189 |
+
"model_and_nonlabel_assets": [
|
| 190 |
+
{
|
| 191 |
+
"path": "<redacted-local-path> model prediction\\Integrated_Yeast_MetaTwin_Deployment\\04_prediction_plugins\\UniKP\\models\\UniKP for Km.pkl",
|
| 192 |
+
"type": "pretrained sklearn ExtraTreesRegressor",
|
| 193 |
+
"size_bytes": 147957236,
|
| 194 |
+
"sha256": "f0b8d597cf4e5f73431980950cb89423415a260dbbf9be0bb1d8810712bf9c07",
|
| 195 |
+
"label_eligible": false,
|
| 196 |
+
"reason": "Model outputs are predictions, not experimental labels."
|
| 197 |
+
},
|
| 198 |
+
{
|
| 199 |
+
"path": "<redacted-local-path> model prediction\\Integrated_Yeast_MetaTwin_Deployment\\04_prediction_plugins\\UniKP\\models\\trfm_12_23000.pkl",
|
| 200 |
+
"type": "SMILES representation weights",
|
| 201 |
+
"label_eligible": false
|
| 202 |
+
},
|
| 203 |
+
{
|
| 204 |
+
"path": "<redacted-local-path> model prediction\\Integrated_Yeast_MetaTwin_Deployment\\04_prediction_plugins\\UniKP\\models\\prot_t5_xl_uniref50",
|
| 205 |
+
"type": "protein representation model",
|
| 206 |
+
"label_eligible": false
|
| 207 |
+
},
|
| 208 |
+
{
|
| 209 |
+
"paths": [
|
| 210 |
+
"<redacted-local-path> model prediction\\Integrated_Yeast_MetaTwin_Deployment\\06_evaluation\\10h2da_unikp_terminal_predictions.csv",
|
| 211 |
+
"<redacted-local-path> model prediction\\Integrated_Yeast_MetaTwin_Deployment\\06_evaluation\\10h2da_external_omega_hydroxylase_unikp_predictions.csv"
|
| 212 |
+
],
|
| 213 |
+
"type": "UniKP prediction outputs",
|
| 214 |
+
"label_eligible": false,
|
| 215 |
+
"reason": "Predictions must not be promoted to labels."
|
| 216 |
+
}
|
| 217 |
+
],
|
| 218 |
+
"missing_or_reference_only_assets": [
|
| 219 |
+
{
|
| 220 |
+
"path": "<redacted-local-path> model prediction\\Yeast-MetaTwin\\Code\\kcatkm_prediction\\UniKP\\Km\\Km_test_11722.pkl",
|
| 221 |
+
"status": "missing; referenced by copied code and prior inventory only"
|
| 222 |
+
},
|
| 223 |
+
{
|
| 224 |
+
"path": "<redacted-local-path> model prediction\\Yeast-MetaTwin\\Code\\kcatkm_prediction\\UniKP\\Km\\Km_features_11722_PreKcat.pkl",
|
| 225 |
+
"status": "missing; would be derived model features, not raw labels"
|
| 226 |
+
},
|
| 227 |
+
{
|
| 228 |
+
"path": "<redacted-local-path> model prediction\\Yeast-MetaTwin\\Code\\kcatkm_prediction\\UniKP\\Kcat_Km\\kcat_km_samples.xlsx",
|
| 229 |
+
"status": "missing and targets kcat/Km rather than Km"
|
| 230 |
+
},
|
| 231 |
+
{
|
| 232 |
+
"path": "<redacted-local-path> model prediction\\Integrated_Yeast_MetaTwin_Deployment - \u526f\u672c\\04_prediction_plugins\\UniKP",
|
| 233 |
+
"status": "missing; the copy contains only a Python environment and top-level documentation"
|
| 234 |
+
}
|
| 235 |
+
],
|
| 236 |
+
"blocking_findings": [
|
| 237 |
+
{
|
| 238 |
+
"code": "ROW_PROVENANCE_MISSING",
|
| 239 |
+
"severity": "fatal",
|
| 240 |
+
"detail": "No local row can be traced to a BRENDA/SABIO record, source publication, or assay."
|
| 241 |
+
},
|
| 242 |
+
{
|
| 243 |
+
"code": "DIRECT_EVIDENCE_NOT_ROW_VERIFIABLE",
|
| 244 |
+
"severity": "fatal",
|
| 245 |
+
"detail": "The papers describe experimental source data at corpus level, but the transformed pickle has no per-row direct-measurement evidence."
|
| 246 |
+
},
|
| 247 |
+
{
|
| 248 |
+
"code": "PHYSICAL_UNIT_NOT_STORED",
|
| 249 |
+
"severity": "fatal",
|
| 250 |
+
"detail": "log10_KM cannot be converted to strict log10(M) from the object alone without assuming an upstream source unit."
|
| 251 |
+
},
|
| 252 |
+
{
|
| 253 |
+
"code": "ROW_COUNT_LINEAGE_UNRESOLVED",
|
| 254 |
+
"severity": "fatal",
|
| 255 |
+
"detail": "The local/UniKP count of 11,722 does not match the 11,675 complete BRENDA entries described by the cited Kroll paper, and no transformation manifest reconciles them."
|
| 256 |
+
},
|
| 257 |
+
{
|
| 258 |
+
"code": "LICENSE_CHAIN_UNRESOLVED",
|
| 259 |
+
"severity": "fatal",
|
| 260 |
+
"detail": "UniKP GitHub README GPL-3.0, UniKP Zenodo CC BY 4.0, Kroll MIT, article CC BY 4.0, and underlying BRENDA rights are not reconciled for the transformed rows."
|
| 261 |
+
},
|
| 262 |
+
{
|
| 263 |
+
"code": "SPLIT_MEMBERSHIP_MISSING",
|
| 264 |
+
"severity": "fatal",
|
| 265 |
+
"detail": "The test-named pickle contains no frozen split and upstream UniKP code randomly repartitions all rows."
|
| 266 |
+
},
|
| 267 |
+
{
|
| 268 |
+
"code": "INPUT_PAIR_CONFLICTS",
|
| 269 |
+
"severity": "fatal",
|
| 270 |
+
"detail": "Twenty sequence-SMILES pairs carry multiple label values, with no replicate provenance or adjudication rule."
|
| 271 |
+
},
|
| 272 |
+
{
|
| 273 |
+
"code": "HOMOLOGY_LEAKAGE_NOT_CONTROLLED",
|
| 274 |
+
"severity": "fatal",
|
| 275 |
+
"detail": "No homology-cluster assignment exists; random row splitting is not suitable for leakage-aware BioCandidateRanker training."
|
| 276 |
+
}
|
| 277 |
+
],
|
| 278 |
+
"conditions_to_unblock": [
|
| 279 |
+
"Acquire a non-pickle governed source table with stable row identifiers and an explicit license/terms snapshot covering the records and intended training use.",
|
| 280 |
+
"Provide per-row original linear Km values, physical units, direct experimental citations/accessions, exact protein sequences, substrate structures, and aggregation lineage.",
|
| 281 |
+
"Reconcile the 11,722 versus 11,675 row counts and document all UniKP transformations.",
|
| 282 |
+
"Recover and preserve original frozen test membership; do not merge protected tests into development data.",
|
| 283 |
+
"Resolve conflicting sequence-SMILES measurements using a prespecified, provenance-preserving policy.",
|
| 284 |
+
"Build a label-independent protein-homology-cluster split and audit exact sequence-SMILES overlap across partitions.",
|
| 285 |
+
"Only after all gates pass, convert direct measurements to schema v1 log10(M), validate through read_normalized_kinetics_jsonl, and run a training-only smoke without external benchmark scoring."
|
| 286 |
+
],
|
| 287 |
+
"sources_consulted": [
|
| 288 |
+
"https://github.com/Luo-SynBioLab/UniKP/tree/3ad5576aaa2c8c0dd0e0b6c283c1d365ab23c6ea",
|
| 289 |
+
"https://github.com/Luo-SynBioLab/UniKP/blob/3ad5576aaa2c8c0dd0e0b6c283c1d365ab23c6ea/UniKP_Km.py",
|
| 290 |
+
"https://doi.org/10.1038/s41467-023-44113-1",
|
| 291 |
+
"https://doi.org/10.5281/zenodo.10115498",
|
| 292 |
+
"https://github.com/AlexanderKroll/KM_prediction",
|
| 293 |
+
"https://doi.org/10.1371/journal.pbio.3001402"
|
| 294 |
+
]
|
| 295 |
+
}
|
data/unikp_audit.json
ADDED
|
@@ -0,0 +1,20 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"adapter": {
|
| 3 |
+
"accepted_rows": 16838,
|
| 4 |
+
"conflicting_duplicate_rows": 215,
|
| 5 |
+
"duplicate_rows": 395,
|
| 6 |
+
"rejected_rows": 172,
|
| 7 |
+
"total_rows": 17010
|
| 8 |
+
},
|
| 9 |
+
"identity": {
|
| 10 |
+
"row_count": 17010,
|
| 11 |
+
"sha256": "13643b0b36374f8d3f64d8b014882cf1b3b58946eeaae2b9dcd59e8b2c2d6719",
|
| 12 |
+
"size_bytes": 12132719
|
| 13 |
+
},
|
| 14 |
+
"limitations": [
|
| 15 |
+
"Source rows lack record-level accession provenance.",
|
| 16 |
+
"No frozen independent benchmark is bundled.",
|
| 17 |
+
"Exact protein-cold split is not a homology-cold split."
|
| 18 |
+
],
|
| 19 |
+
"source": "<redacted-local-path> model prediction\\Integrated_Yeast_MetaTwin_Deployment\\04_prediction_plugins\\UniKP\\datasets\\Kcat_combination_0918_wildtype_mutant.json"
|
| 20 |
+
}
|
release/software-implementation-v10-redacted-manifest.json
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
release/software-implementation-v10-redacted.zip
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:34e42f5b211bd590b785abe3ff59ac2cfaaca801328ddef68c9b303044b394d8
|
| 3 |
+
size 9475594
|