File size: 2,575 Bytes
4872e0f | 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 | # CodiEsp Diagnosis Grounding Data
This repository contains the prepared data files needed to reproduce the
CodiEsp-D diagnosis grounding experiments. It is a data artifact only: it does
not include experiment code, Slurm scripts, model outputs, logs, or raw source
archives.
## Directory Layout
```text
data/codiesp/
facts_test_full_exact.jsonl
evidence_relocations_full_exact.jsonl
stats_full_exact.json
test_docs_full_exact.txt
spotcheck_50_full_exact.tsv
index/icd10cm_fy2018/
icd10cm_fy2018_retrieval.jsonl
code_metadata.jsonl
inventory_manifest.json
self_retrieval_probe.json
schema/icd10cm/
normalization_map.json
vocab_family.json
vocab_role.json
vocab_qualifier.json
vocab_scope.json
vocab_temporal.json
vocab_temporal_raw.json
```
## Main Evaluation File
```text
data/codiesp/facts_test_full_exact.jsonl
```
This is the prepared CodiEsp-D test set used by the second-domain experiments.
It contains the exact-English-relocation slice of the official CodiEsp test
split.
Summary from `data/codiesp/stats_full_exact.json`:
- Source documents: 250
- Target facts: 3,144
- Unique gold diagnosis codes: 958
- Exact relocation parse rate: 1.0
- Exact substring rate: 1.0
Each JSONL row contains the clinical mention, English context fields, document
identifier, one gold diagnosis code, and relocation metadata.
## Relocation Files
```text
data/codiesp/evidence_relocations_full_exact.jsonl
data/codiesp/spotcheck_50_full_exact.tsv
```
These files document how Spanish CodiEsp diagnosis spans were relocated into
the English context used for retrieval. The evaluation JSONL keeps only facts
with exact English substring relocation.
## Retrieval Inventory
```text
index/icd10cm_fy2018/icd10cm_fy2018_retrieval.jsonl
```
This is the candidate label inventory used by retrieval. It contains 71,344
candidate diagnosis-code entries. Each entry contains a code identifier,
canonical English label, retrieval/documentation text, and structural metadata.
Inventory construction metadata is in:
```text
index/icd10cm_fy2018/inventory_manifest.json
```
## Schema Files
```text
schema/icd10cm/
```
This directory contains the controlled vocabularies and normalization map used
by the CodiEsp structured grounding schema.
## Not Included
The following are intentionally excluded:
- Experiment code and Slurm scripts.
- Model outputs and intermediate run files.
- Slurm logs.
- Raw downloaded CodiEsp or diagnosis-code archives.
- Python bytecode caches.
`MANIFEST.tsv` lists the files in this data artifact with byte sizes.
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