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README.md
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# 🧬 Smulders Longevity Extracted Dataset
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This dataset was extracted from the publication:
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> **Genetics of human longevity: From variants to genes to pathways**
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> *Journal of Internal Medicine, 2023 — Smulders et al.*
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> DOI: [10.1111/joim.13690](https://doi.org/10.1111/joim.13690)
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It contains structured gene names and SNP identifiers mentioned throughout the paper.
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---
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## 📄 Dataset Description
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| Column | Description |
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|--------|------------------------------|
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| type | Entry type: `Gene` or `SNP` |
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| id | The gene name or SNP ID |
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The gene names are uppercase identifiers, and SNPs follow the common `rs` format (e.g., rs429358).
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---
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## 🔧 Usage Instructions
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### Load in Python
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```python
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import pandas as pd
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df = pd.read_parquet("smulders_longevity_extracted.parquet")
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print(df.head())
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```
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---
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## 🚀 Use Cases
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- Gene prioritization for longevity research
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- Mapping SNPs from literature to existing aging gene databases
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- Input for polygenic risk score (PRS) modeling
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- Enhancing datasets like LongevityMap with literature-derived signals
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---
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## 📚 Citation
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If you use this dataset, please cite the original paper:
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> Smulders, Y. M., et al. (2023). Genetics of human longevity: From variants to genes to pathways. *Journal of Internal Medicine*.
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> [https://doi.org/10.1111/joim.13690](https://doi.org/10.1111/joim.13690)
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---
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## 🙏 Acknowledgments
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Extracted and compiled by Iris Lee for longevity research and hackathon use. ### 🧑💻 Team: MultiModalMillenials. Iris Lee (`@iris8090`)
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