bladder_smartseq2_unstructured_metadata.json

{
  "age_colors": [
    "#e1f3b2",
    "#97d6b9",
    "#1f80b8"
  ],
  "citation": "Publication: https://doi.org/10.1038/s41586-020-2496-1 Dataset Version: https://datasets.cellxgene.cziscience.com/4229bba1-974c-4595-ac5c-15a9035c5688.h5ad curated and distributed by CZ CELLxGENE Discover in Collection: https://cellxgene.cziscience.com/collections/0b9d8a04-bb9d-44da-aa27-705bb65b54eb",
  "leiden": {
    "params": {
      "n_iterations": [
        -1
      ],
      "random_state": [
        0
      ],
      "resolution": [
        1
      ]
    }
  },
  "louvain": {
    "params": {
      "random_state": [
        0
      ]
    }
  },
  "neighbors": {
    "params": {
      "method": [
        "umap"
      ],
      "metric": [
        "euclidean"
      ],
      "n_neighbors": [
        15
      ],
      "n_pcs": [
        5
      ]
    }
  },
  "pca": {
    "variance": [
      454.2019348144531,
      78.98866271972656,
      64.3159408569336,
      34.90398025512695,
      29.657930374145508,
      23.413799285888672,
      18.98521614074707,
      16.465089797973633,
      15.075677871704102,
      13.814810752868652,
      12.145706176757812,
      11.50489616394043,
      10.541938781738281,
      9.79446029663086,
      9.070988655090332,
      8.92251968383789,
      8.503053665161133,
      8.10325813293457,
      8.041877746582031,
      7.778668403625488,
      7.545705318450928,
      7.2816057205200195,
      6.927757740020752,
      6.757198810577393,
      6.648375511169434,
      6.572560787200928,
      6.369706153869629,
      6.293848514556885,
      6.182426452636719,
      6.127403736114502,
      6.021190643310547,
      5.924084663391113,
      5.908888816833496,
      5.800915241241455,
      5.7556538581848145,
      5.702203273773193,
      5.690658092498779,
      5.641060829162598,
      5.626979351043701,
      5.58701229095459,
      5.529174327850342,
      5.502626419067383,
      5.455349445343018,
      5.442960739135742,
      5.421144485473633,
      5.394070148468018,
      5.346145153045654,
      5.333089828491211,
      5.320368766784668,
      5.290338039398193
    ],
    "variance_ratio": [
      0.09878099709749222,
      0.01717865653336048,
      0.013987595215439796,
      0.007591006811708212,
      0.006450082641094923,
      0.005092093255370855,
      0.004128953441977501,
      0.003580869873985648,
      0.0032786971423774958,
      0.0030044803861528635,
      0.0026414792519062757,
      0.0025021142791956663,
      0.0022926877718418837,
      0.0021301242522895336,
      0.001972781727090478,
      0.0019404924241825938,
      0.001849265885539353,
      0.0017623173771426082,
      0.0017489681486040354,
      0.0016917247558012605,
      0.0016410592943429947,
      0.0015836223028600216,
      0.0015066665364429355,
      0.0014695728896185756,
      0.0014459057711064816,
      0.0014294174034148455,
      0.0013852999545633793,
      0.001368802273645997,
      0.0013445699587464333,
      0.0013326035114005208,
      0.001309503917582333,
      0.0012883851304650307,
      0.0012850802158936858,
      0.0012615978484973311,
      0.0012517543509602547,
      0.001240129815414548,
      0.0012376188533380628,
      0.0012268323916941881,
      0.001223769853822887,
      0.0012150777038186789,
      0.0012024990282952785,
      0.0011967252939939499,
      0.0011864433763548732,
      0.0011837490601465106,
      0.001179004437290132,
      0.0011731161503121257,
      0.0011626933701336384,
      0.0011598540004342794,
      0.0011570873903110623,
      0.0011505562579259276
    ]
  },
  "schema_reference": "https://github.com/chanzuckerberg/single-cell-curation/blob/main/schema/5.3.0/schema.md",
  "schema_version": "5.3.0",
  "title": "Bladder lumen - A single-cell transcriptomic atlas characterizes ageing tissues in the mouse - Smart-seq2"
}