Mitchell_T1D: individual ancestry replaces the conversion-time constant, and age is filled in for 53 specimens. Emerson_CMV: ancestry corrected for 15 specimens. Both cohorts gain source race/ethnicity and provenance columns. The immuneML metadata and the mitchell-t1d, t1d-pooled and cmv task files, MANIFEST, DATASHEET, dataset card and immuneML README are updated to match. Labels, folds and repertoires are unchanged.
3 days ago
Stop stating a source revision for the immuneML export
07-0202-D180_TCRB and 04-1104-D180_TCRB move from fold 0 to 2; 07-0177-D540_TCRB (fold 1) and 07-0177-D0_TCRB (fold 2) move to fold 0. CV_fold and fold change for those rows only. The immuneML export's TB metadata, tb-progression fold splits, README and MANIFEST are regenerated to match; repertoire files are unchanged.
8 days ago
Add immuneML-ready AIRR export (immuneML/) and document it in the cards
Adds immuneML/: AIRR Rearrangement repertoires for all 2,352 specimens, immuneML metadata CSVs, fixed fold splits and example specs for the 11 benchmark tasks, MANIFEST.tsv and export_report.json (built from 165c551 with utils/immuneml_export.py and utils/immuneml_tasks.py). README.md, DATASHEET.md and croissant.json describe the export.
