Commit History

add epinformerseq per-cell CDFs (11 cells, 10K SNPs + 34K baselines)
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Uniform DHS-augmented chrombpnet CDF — 786 tracks (42 ATAC/DNASE local rebuild + 744 CHIP ml007 rebuild) — fix/post-v040-followups
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Rebuild chrombpnet CDFs with DHS-augmented CHIP samples (PR fix/post-v040-followups)
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Add Meuleman et al. 2020 DHS Index (hg38) — input for DHS-augmented chrombpnet CDF rebuild
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Rebuild ChromBPNet CDFs against chrombpnet_nobias (0.3.0+ default; 786 tracks; sha256 be61e9e8...)
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Rebuild chrombpnet_pertrack.npz: 786 tracks (42 ChromBPNet + 744 BPNet/CHIP)
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Rebuild chrombpnet_pertrack.npz: 768 tracks (24 ChromBPNet + 744 BPNet/CHIP)
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Rebuild chrombpnet_pertrack.npz: 42 tracks (was 24)
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Rebuild chrombpnet pertrack CDFs: fix DNASE:hindbrain zero-count row
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Delete sei_regulatory_classification_baseline.npy with huggingface_hub
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Delete sei_regulatory_classification.npy with huggingface_hub
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Delete legnet_promoter_activity_baseline.npy with huggingface_hub
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Delete legnet_promoter_activity.npy with huggingface_hub
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Delete enformer_tss_activity_baseline.npy with huggingface_hub
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Delete enformer_tss_activity.npy with huggingface_hub
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Delete enformer_tf_binding_baseline.npy with huggingface_hub
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Delete enformer_tf_binding.npy with huggingface_hub
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Delete enformer_histone_marks_baseline.npy with huggingface_hub
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Delete enformer_histone_marks.npy with huggingface_hub
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Delete enformer_chromatin_accessibility_baseline.npy with huggingface_hub
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Delete enformer_chromatin_accessibility.npy with huggingface_hub
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Delete chrombpnet_chromatin_accessibility_baseline.npy with huggingface_hub
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Delete chrombpnet_chromatin_accessibility.npy with huggingface_hub
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Delete borzoi_tss_activity_baseline.npy with huggingface_hub
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Delete borzoi_tss_activity.npy with huggingface_hub
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Delete borzoi_tf_binding_baseline.npy with huggingface_hub
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Delete borzoi_tf_binding.npy with huggingface_hub
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Delete borzoi_histone_marks_baseline.npy with huggingface_hub
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Delete borzoi_histone_marks.npy with huggingface_hub
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Delete borzoi_gene_expression_baseline.npy with huggingface_hub
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Delete borzoi_gene_expression.npy with huggingface_hub
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Delete borzoi_chromatin_accessibility_baseline.npy with huggingface_hub
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Delete borzoi_chromatin_accessibility.npy with huggingface_hub
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Delete alphagenome_tss_activity_baseline.npy with huggingface_hub
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Delete alphagenome_tss_activity.npy with huggingface_hub
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Delete alphagenome_tf_binding_baseline.npy with huggingface_hub
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Delete alphagenome_tf_binding.npy with huggingface_hub
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Delete alphagenome_splicing_baseline.npy with huggingface_hub
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Delete alphagenome_splicing.npy with huggingface_hub
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Delete alphagenome_histone_marks_baseline.npy with huggingface_hub
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Delete alphagenome_histone_marks.npy with huggingface_hub
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Delete alphagenome_gene_expression_baseline.npy with huggingface_hub
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Delete alphagenome_gene_expression.npy with huggingface_hub
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Delete alphagenome_chromatin_accessibility_baseline.npy with huggingface_hub
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Delete alphagenome_chromatin_accessibility.npy with huggingface_hub
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Upload sei_pertrack.npz with huggingface_hub
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Upload legnet_pertrack.npz with huggingface_hub
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Upload enformer_pertrack.npz with huggingface_hub
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Upload chrombpnet_pertrack.npz with huggingface_hub
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Upload borzoi_pertrack.npz with huggingface_hub
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