rnaglib / huggingface_rna_vs /graphs /1TN2_A_SPM_77.json
luiswyss's picture
Add files using upload-large-folder tool
4d9ccad verified
{
"directed": true,
"multigraph": false,
"graph": {
"name": "1tn2",
"pdbid": "1tn2",
"ligand_to_smiles": {
"SPM": "C(CCNCCCN)CNCCCN"
},
"ss": {
"A": "(((.(((..((((........)))).((((........)))).....(((((.......)))))))).)))...."
},
"seq": {
"A": "GCGGAUUUAGCUCAGUUGGGAGAGCGCCAGACUGAAAUCUGGAGGUCCUGUGUUCGAUCCACAGAAUUCGCACCA"
},
"pocket_name": "1TN2_A_SPM_77"
},
"nodes": [
{
"nt": "A",
"nt_full": "A",
"nt_code": "A",
"chain_id": "A",
"is_modified": false,
"xyz_P": [
41.827999114990234,
0.9039999842643738,
47.54999923706055
],
"binding_ion_4.0A": null,
"binding_small-molecule-4.0A": null,
"binding_ion_6.0A": null,
"binding_small-molecule-6.0A": null,
"binding_ion_8.0A": null,
"binding_small-molecule-8.0A": null,
"protein_binding": false,
"protein_content": [
0,
0,
0
],
"protein_content_4.0": 0,
"protein_content_6.0": 0,
"protein_content_8.0": 0,
"in_pocket": false,
"id": "1tn2.A.5"
},
{
"nt": "U",
"nt_full": "U",
"nt_code": "U",
"chain_id": "A",
"is_modified": false,
"xyz_P": [
42.70600128173828,
0.6299999952316284,
41.790000915527344
],
"binding_ion_4.0A": null,
"binding_small-molecule-4.0A": null,
"binding_ion_6.0A": null,
"binding_small-molecule-6.0A": null,
"binding_ion_8.0A": null,
"binding_small-molecule-8.0A": null,
"protein_binding": false,
"protein_content": [
0,
0,
0
],
"protein_content_4.0": 0,
"protein_content_6.0": 0,
"protein_content_8.0": 0,
"in_pocket": false,
"id": "1tn2.A.6"
},
{
"nt": "U",
"nt_full": "U",
"nt_code": "U",
"chain_id": "A",
"is_modified": false,
"xyz_P": [
41.07099914550781,
2.503000020980835,
36.44499969482422
],
"binding_ion_4.0A": null,
"binding_small-molecule-4.0A": null,
"binding_ion_6.0A": null,
"binding_small-molecule-6.0A": null,
"binding_ion_8.0A": [
"H_MG",
78,
" "
],
"binding_small-molecule-8.0A": null,
"protein_binding": false,
"protein_content": [
0,
0,
0
],
"protein_content_4.0": 0,
"protein_content_6.0": 0,
"protein_content_8.0": 0,
"in_pocket": false,
"id": "1tn2.A.7"
},
{
"nt": "U",
"nt_full": "U",
"nt_code": "U",
"chain_id": "A",
"is_modified": false,
"xyz_P": [
37.73699951171875,
4.406000137329102,
31.485000610351562
],
"binding_ion_4.0A": null,
"binding_small-molecule-4.0A": null,
"binding_ion_6.0A": [
"H_MG",
78,
" "
],
"binding_small-molecule-6.0A": null,
"binding_ion_8.0A": [
"H_MG",
78,
" "
],
"binding_small-molecule-8.0A": null,
"protein_binding": false,
"protein_content": [
0,
0,
0
],
"protein_content_4.0": 0,
"protein_content_6.0": 0,
"protein_content_8.0": 0,
"in_pocket": false,
"id": "1tn2.A.8"
},
{
"nt": "A",
"nt_full": "A",
"nt_code": "A",
"chain_id": "A",
"is_modified": false,
"xyz_P": [
38.47100067138672,
5.60699987411499,
26.593000411987305
],
"binding_small-molecule-4.0A": {
"name": "SPM",
"id": [
"H_SPM",
77,
" "
]
},
"binding_ion_4.0A": null,
"binding_small-molecule-6.0A": {
"name": "SPM",
"id": [
"H_SPM",
77,
" "
]
},
"binding_ion_6.0A": [
"H_PB",
84,
" "
],
"binding_small-molecule-8.0A": {
"name": "SPM",
"id": [
"H_SPM",
77,
" "
]
},
"binding_ion_8.0A": [
"H_PB",
84,
" "
],
"protein_binding": false,
"protein_content": [
0,
0,
0
],
"protein_content_4.0": 0,
"protein_content_6.0": 0,
"protein_content_8.0": 0,
"in_pocket": true,
"id": "1tn2.A.9"
},
{
"nt": "G",
"nt_full": "2MG",
"nt_code": "G",
"chain_id": "A",
"is_modified": true,
"xyz_P": [
35.005001068115234,
6.394000053405762,
21.849000930786133
],
"binding_ion_4.0A": null,
"binding_small-molecule-4.0A": null,
"binding_ion_6.0A": null,
"binding_small-molecule-6.0A": null,
"binding_ion_8.0A": null,
"binding_small-molecule-8.0A": null,
"protein_binding": false,
"protein_content": [
0,
0,
0
],
"protein_content_4.0": 0,
"protein_content_6.0": 0,
"protein_content_8.0": 0,
"in_pocket": true,
"id": "1tn2.A.10"
},
{
"nt": "C",
"nt_full": "C",
"nt_code": "C",
"chain_id": "A",
"is_modified": false,
"xyz_P": [
33.3489990234375,
1.7200000286102295,
24.354999542236328
],
"binding_ion_4.0A": null,
"binding_small-molecule-4.0A": null,
"binding_ion_6.0A": [
"H_MG",
78,
" "
],
"binding_small-molecule-6.0A": null,
"binding_small-molecule-8.0A": {
"name": "SPM",
"id": [
"H_SPM",
77,
" "
]
},
"binding_ion_8.0A": [
"H_MG",
78,
" "
],
"protein_binding": false,
"protein_content": [
0,
0,
0
],
"protein_content_4.0": 0,
"protein_content_6.0": 0,
"protein_content_8.0": 0,
"in_pocket": true,
"id": "1tn2.A.11"
},
{
"nt": "U",
"nt_full": "U",
"nt_code": "U",
"chain_id": "A",
"is_modified": false,
"xyz_P": [
34.81999969482422,
-3.444999933242798,
27.28499984741211
],
"binding_ion_4.0A": [
"H_MG",
78,
" "
],
"binding_small-molecule-4.0A": null,
"binding_ion_6.0A": [
"H_MG",
78,
" "
],
"binding_small-molecule-6.0A": null,
"binding_ion_8.0A": [
"H_MG",
78,
" "
],
"binding_small-molecule-8.0A": null,
"protein_binding": false,
"protein_content": [
0,
0,
0
],
"protein_content_4.0": 0,
"protein_content_6.0": 0,
"protein_content_8.0": 0,
"in_pocket": false,
"id": "1tn2.A.12"
},
{
"nt": "C",
"nt_full": "C",
"nt_code": "C",
"chain_id": "A",
"is_modified": false,
"xyz_P": [
39.483001708984375,
-4.888000011444092,
30.820999145507812
],
"binding_ion_4.0A": null,
"binding_small-molecule-4.0A": null,
"binding_ion_6.0A": [
"H_MG",
78,
" "
],
"binding_small-molecule-6.0A": null,
"binding_ion_8.0A": [
"H_MG",
78,
" "
],
"binding_small-molecule-8.0A": null,
"protein_binding": false,
"protein_content": [
0,
0,
0
],
"protein_content_4.0": 0,
"protein_content_6.0": 0,
"protein_content_8.0": 0,
"in_pocket": false,
"id": "1tn2.A.13"
},
{
"nt": "A",
"nt_full": "A",
"nt_code": "A",
"chain_id": "A",
"is_modified": false,
"xyz_P": [
45.46699905395508,
-1.9520000219345093,
32.84700012207031
],
"binding_ion_4.0A": null,
"binding_small-molecule-4.0A": null,
"binding_ion_6.0A": null,
"binding_small-molecule-6.0A": null,
"binding_ion_8.0A": null,
"binding_small-molecule-8.0A": null,
"protein_binding": false,
"protein_content": [
0,
0,
0
],
"protein_content_4.0": 0,
"protein_content_6.0": 0,
"protein_content_8.0": 0,
"in_pocket": false,
"id": "1tn2.A.14"
},
{
"nt": "G",
"nt_full": "G",
"nt_code": "G",
"chain_id": "A",
"is_modified": false,
"xyz_P": [
50.237998962402344,
0.2150000035762787,
33.78799819946289
],
"binding_ion_4.0A": null,
"binding_small-molecule-4.0A": null,
"binding_ion_6.0A": [
"H_PB",
83,
" "
],
"binding_small-molecule-6.0A": null,
"binding_ion_8.0A": [
"H_PB",
83,
" "
],
"binding_small-molecule-8.0A": null,
"protein_binding": false,
"protein_content": [
0,
0,
0
],
"protein_content_4.0": 0,
"protein_content_6.0": 0,
"protein_content_8.0": 0,
"in_pocket": false,
"id": "1tn2.A.15"
},
{
"nt": "U",
"nt_full": "H2U",
"nt_code": "U",
"chain_id": "A",
"is_modified": true,
"xyz_P": [
52.52000045776367,
5.459000110626221,
35.22800064086914
],
"binding_ion_4.0A": null,
"binding_small-molecule-4.0A": null,
"binding_ion_6.0A": null,
"binding_small-molecule-6.0A": null,
"binding_ion_8.0A": null,
"binding_small-molecule-8.0A": null,
"protein_binding": false,
"protein_content": [
0,
0,
0
],
"protein_content_4.0": 0,
"protein_content_6.0": 0,
"protein_content_8.0": 0,
"in_pocket": false,
"id": "1tn2.A.16"
},
{
"nt": "U",
"nt_full": "H2U",
"nt_code": "U",
"chain_id": "A",
"is_modified": true,
"xyz_P": [
58.70500183105469,
7.357999801635742,
35.93299865722656
],
"binding_ion_4.0A": null,
"binding_small-molecule-4.0A": null,
"binding_ion_6.0A": null,
"binding_small-molecule-6.0A": null,
"binding_ion_8.0A": null,
"binding_small-molecule-8.0A": null,
"protein_binding": false,
"protein_content": [
0,
0,
0
],
"protein_content_4.0": 0,
"protein_content_6.0": 0,
"protein_content_8.0": 0,
"in_pocket": false,
"id": "1tn2.A.17"
},
{
"nt": "G",
"nt_full": "G",
"nt_code": "G",
"chain_id": "A",
"is_modified": false,
"xyz_P": [
56.07600021362305,
12.378000259399414,
38.84199905395508
],
"binding_ion_4.0A": null,
"binding_small-molecule-4.0A": null,
"binding_ion_6.0A": [
"H_PB",
83,
" "
],
"binding_small-molecule-6.0A": null,
"binding_ion_8.0A": [
"H_PB",
83,
" "
],
"binding_small-molecule-8.0A": null,
"protein_binding": false,
"protein_content": [
0,
0,
0
],
"protein_content_4.0": 0,
"protein_content_6.0": 0,
"protein_content_8.0": 0,
"in_pocket": false,
"id": "1tn2.A.18"
},
{
"nt": "G",
"nt_full": "G",
"nt_code": "G",
"chain_id": "A",
"is_modified": false,
"xyz_P": [
55.54199981689453,
14.762999534606934,
33.4109992980957
],
"binding_ion_4.0A": [
"H_PB",
83,
" "
],
"binding_small-molecule-4.0A": null,
"binding_ion_6.0A": [
"H_PB",
83,
" "
],
"binding_small-molecule-6.0A": null,
"binding_ion_8.0A": [
"H_PB",
83,
" "
],
"binding_small-molecule-8.0A": null,
"protein_binding": false,
"protein_content": [
0,
0,
0
],
"protein_content_4.0": 0,
"protein_content_6.0": 0,
"protein_content_8.0": 0,
"in_pocket": false,
"id": "1tn2.A.19"
},
{
"nt": "G",
"nt_full": "G",
"nt_code": "G",
"chain_id": "A",
"is_modified": false,
"xyz_P": [
52.96099853515625,
17.28700065612793,
27.701000213623047
],
"binding_ion_4.0A": [
"H_MG",
80,
" "
],
"binding_small-molecule-4.0A": null,
"binding_ion_6.0A": [
"H_PB",
83,
" "
],
"binding_small-molecule-6.0A": null,
"binding_small-molecule-8.0A": {
"name": "SPM",
"id": [
"H_SPM",
77,
" "
]
},
"binding_ion_8.0A": [
"H_PB",
83,
" "
],
"protein_binding": false,
"protein_content": [
0,
0,
0
],
"protein_content_4.0": 0,
"protein_content_6.0": 0,
"protein_content_8.0": 0,
"in_pocket": false,
"id": "1tn2.A.20"
},
{
"nt": "A",
"nt_full": "A",
"nt_code": "A",
"chain_id": "A",
"is_modified": false,
"xyz_P": [
50.91999816894531,
16.322999954223633,
23.388999938964844
],
"binding_ion_4.0A": [
"H_MG",
79,
" "
],
"binding_small-molecule-4.0A": null,
"binding_small-molecule-6.0A": {
"name": "SPM",
"id": [
"H_SPM",
77,
" "
]
},
"binding_ion_6.0A": [
"H_MG",
79,
" "
],
"binding_small-molecule-8.0A": {
"name": "SPM",
"id": [
"H_SPM",
77,
" "
]
},
"binding_ion_8.0A": [
"H_PB",
84,
" "
],
"protein_binding": false,
"protein_content": [
0,
0,
0
],
"protein_content_4.0": 0,
"protein_content_6.0": 0,
"protein_content_8.0": 0,
"in_pocket": true,
"id": "1tn2.A.21"
},
{
"nt": "G",
"nt_full": "G",
"nt_code": "G",
"chain_id": "A",
"is_modified": false,
"xyz_P": [
49.84299850463867,
10.67300033569336,
20.89900016784668
],
"binding_small-molecule-4.0A": {
"name": "SPM",
"id": [
"H_SPM",
77,
" "
]
},
"binding_ion_4.0A": null,
"binding_small-molecule-6.0A": {
"name": "SPM",
"id": [
"H_SPM",
77,
" "
]
},
"binding_ion_6.0A": [
"H_PB",
84,
" "
],
"binding_small-molecule-8.0A": {
"name": "SPM",
"id": [
"H_SPM",
77,
" "
]
},
"binding_ion_8.0A": [
"H_PB",
84,
" "
],
"protein_binding": false,
"protein_content": [
0,
0,
0
],
"protein_content_4.0": 0,
"protein_content_6.0": 0,
"protein_content_8.0": 0,
"in_pocket": true,
"id": "1tn2.A.22"
},
{
"nt": "A",
"nt_full": "A",
"nt_code": "A",
"chain_id": "A",
"is_modified": false,
"xyz_P": [
49.724998474121094,
4.054999828338623,
18.96299934387207
],
"binding_small-molecule-4.0A": {
"name": "SPM",
"id": [
"H_SPM",
77,
" "
]
},
"binding_ion_4.0A": null,
"binding_small-molecule-6.0A": {
"name": "SPM",
"id": [
"H_SPM",
77,
" "
]
},
"binding_ion_6.0A": [
"H_PB",
84,
" "
],
"binding_small-molecule-8.0A": {
"name": "SPM",
"id": [
"H_SPM",
77,
" "
]
},
"binding_ion_8.0A": [
"H_PB",
84,
" "
],
"protein_binding": false,
"protein_content": [
0,
0,
0
],
"protein_content_4.0": 0,
"protein_content_6.0": 0,
"protein_content_8.0": 0,
"in_pocket": true,
"id": "1tn2.A.23"
},
{
"nt": "G",
"nt_full": "G",
"nt_code": "G",
"chain_id": "A",
"is_modified": false,
"xyz_P": [
49.24300003051758,
-1.2170000076293945,
17.381000518798828
],
"binding_small-molecule-4.0A": {
"name": "SPM",
"id": [
"H_SPM",
77,
" "
]
},
"binding_ion_4.0A": null,
"binding_small-molecule-6.0A": {
"name": "SPM",
"id": [
"H_SPM",
77,
" "
]
},
"binding_ion_6.0A": null,
"binding_small-molecule-8.0A": {
"name": "SPM",
"id": [
"H_SPM",
77,
" "
]
},
"binding_ion_8.0A": null,
"protein_binding": false,
"protein_content": [
0,
0,
0
],
"protein_content_4.0": 0,
"protein_content_6.0": 0,
"protein_content_8.0": 0,
"in_pocket": true,
"id": "1tn2.A.24"
},
{
"nt": "C",
"nt_full": "C",
"nt_code": "C",
"chain_id": "A",
"is_modified": false,
"xyz_P": [
46.47700119018555,
-5.7230000495910645,
15.6899995803833
],
"binding_small-molecule-4.0A": {
"name": "SPM",
"id": [
"H_SPM",
77,
" "
]
},
"binding_ion_4.0A": null,
"binding_small-molecule-6.0A": {
"name": "SPM",
"id": [
"H_SPM",
77,
" "
]
},
"binding_ion_6.0A": null,
"binding_small-molecule-8.0A": {
"name": "SPM",
"id": [
"H_SPM",
77,
" "
]
},
"binding_ion_8.0A": null,
"protein_binding": false,
"protein_content": [
0,
0,
0
],
"protein_content_4.0": 0,
"protein_content_6.0": 0,
"protein_content_8.0": 0,
"in_pocket": true,
"id": "1tn2.A.25"
},
{
"nt": "G",
"nt_full": "M2G",
"nt_code": "G",
"chain_id": "A",
"is_modified": true,
"xyz_P": [
40.895999908447266,
-6.802000045776367,
13.24899959564209
],
"binding_ion_4.0A": null,
"binding_small-molecule-4.0A": null,
"binding_ion_6.0A": null,
"binding_small-molecule-6.0A": null,
"binding_ion_8.0A": null,
"binding_small-molecule-8.0A": null,
"protein_binding": false,
"protein_content": [
0,
0,
0
],
"protein_content_4.0": 0,
"protein_content_6.0": 0,
"protein_content_8.0": 0,
"in_pocket": true,
"id": "1tn2.A.26"
},
{
"nt": "C",
"nt_full": "C",
"nt_code": "C",
"chain_id": "A",
"is_modified": false,
"xyz_P": [
36.38399887084961,
-4.370999813079834,
10.71399974822998
],
"binding_ion_4.0A": null,
"binding_small-molecule-4.0A": null,
"binding_ion_6.0A": null,
"binding_small-molecule-6.0A": null,
"binding_small-molecule-8.0A": {
"name": "SPM",
"id": [
"H_SPM",
77,
" "
]
},
"binding_ion_8.0A": null,
"protein_binding": false,
"protein_content": [
0,
0,
0
],
"protein_content_4.0": 0,
"protein_content_6.0": 0,
"protein_content_8.0": 0,
"in_pocket": true,
"id": "1tn2.A.27"
},
{
"nt": "C",
"nt_full": "C",
"nt_code": "C",
"chain_id": "A",
"is_modified": false,
"xyz_P": [
35.380001068115234,
-0.871999979019165,
6.678999900817871
],
"binding_ion_4.0A": null,
"binding_small-molecule-4.0A": null,
"binding_ion_6.0A": null,
"binding_small-molecule-6.0A": null,
"binding_ion_8.0A": null,
"binding_small-molecule-8.0A": null,
"protein_binding": false,
"protein_content": [
0,
0,
0
],
"protein_content_4.0": 0,
"protein_content_6.0": 0,
"protein_content_8.0": 0,
"in_pocket": false,
"id": "1tn2.A.28"
},
{
"nt": "A",
"nt_full": "A",
"nt_code": "A",
"chain_id": "A",
"is_modified": false,
"xyz_P": [
36.939998626708984,
1.5240000486373901,
1.8530000448226929
],
"binding_ion_4.0A": null,
"binding_small-molecule-4.0A": null,
"binding_ion_6.0A": null,
"binding_small-molecule-6.0A": null,
"binding_ion_8.0A": null,
"binding_small-molecule-8.0A": null,
"protein_binding": false,
"protein_content": [
0,
0,
0
],
"protein_content_4.0": 0,
"protein_content_6.0": 0,
"protein_content_8.0": 0,
"in_pocket": false,
"id": "1tn2.A.29"
},
{
"nt": "G",
"nt_full": "G",
"nt_code": "G",
"chain_id": "A",
"is_modified": false,
"xyz_P": [
42.06399917602539,
1.7630000114440918,
-2.174999952316284
],
"binding_ion_4.0A": null,
"binding_small-molecule-4.0A": null,
"binding_ion_6.0A": null,
"binding_small-molecule-6.0A": null,
"binding_ion_8.0A": null,
"binding_small-molecule-8.0A": null,
"protein_binding": false,
"protein_content": [
0,
0,
0
],
"protein_content_4.0": 0,
"protein_content_6.0": 0,
"protein_content_8.0": 0,
"in_pocket": false,
"id": "1tn2.A.30"
},
{
"nt": "A",
"nt_full": "A",
"nt_code": "A",
"chain_id": "A",
"is_modified": false,
"xyz_P": [
47.12099838256836,
1.312999963760376,
-4.8520002365112305
],
"binding_ion_4.0A": null,
"binding_small-molecule-4.0A": null,
"binding_ion_6.0A": [
"H_PB",
85,
" "
],
"binding_small-molecule-6.0A": null,
"binding_ion_8.0A": [
"H_PB",
85,
" "
],
"binding_small-molecule-8.0A": null,
"protein_binding": false,
"protein_content": [
0,
0,
0
],
"protein_content_4.0": 0,
"protein_content_6.0": 0,
"protein_content_8.0": 0,
"in_pocket": false,
"id": "1tn2.A.31"
},
{
"nt": "U",
"nt_full": "PSU",
"nt_code": "U",
"chain_id": "A",
"is_modified": true,
"xyz_P": [
46.178001403808594,
-10.61299991607666,
9.670999526977539
],
"binding_ion_4.0A": null,
"binding_small-molecule-4.0A": null,
"binding_ion_6.0A": null,
"binding_small-molecule-6.0A": null,
"binding_ion_8.0A": null,
"binding_small-molecule-8.0A": null,
"protein_binding": false,
"protein_content": [
0,
0,
0
],
"protein_content_4.0": 0,
"protein_content_6.0": 0,
"protein_content_8.0": 0,
"in_pocket": false,
"id": "1tn2.A.39"
},
{
"nt": "C",
"nt_full": "5MC",
"nt_code": "C",
"chain_id": "A",
"is_modified": true,
"xyz_P": [
51.29800033569336,
-8.312999725341797,
10.293999671936035
],
"binding_ion_4.0A": null,
"binding_small-molecule-4.0A": null,
"binding_ion_6.0A": null,
"binding_small-molecule-6.0A": null,
"binding_ion_8.0A": null,
"binding_small-molecule-8.0A": null,
"protein_binding": false,
"protein_content": [
0,
0,
0
],
"protein_content_4.0": 0,
"protein_content_6.0": 0,
"protein_content_8.0": 0,
"in_pocket": false,
"id": "1tn2.A.40"
},
{
"nt": "U",
"nt_full": "U",
"nt_code": "U",
"chain_id": "A",
"is_modified": false,
"xyz_P": [
53.83300018310547,
-2.75600004196167,
9.756999969482422
],
"binding_ion_4.0A": null,
"binding_small-molecule-4.0A": null,
"binding_ion_6.0A": null,
"binding_small-molecule-6.0A": null,
"binding_ion_8.0A": null,
"binding_small-molecule-8.0A": null,
"protein_binding": false,
"protein_content": [
0,
0,
0
],
"protein_content_4.0": 0,
"protein_content_6.0": 0,
"protein_content_8.0": 0,
"in_pocket": false,
"id": "1tn2.A.41"
},
{
"nt": "G",
"nt_full": "G",
"nt_code": "G",
"chain_id": "A",
"is_modified": false,
"xyz_P": [
53.33700180053711,
2.760999917984009,
9.154000282287598
],
"binding_ion_4.0A": null,
"binding_small-molecule-4.0A": null,
"binding_ion_6.0A": null,
"binding_small-molecule-6.0A": null,
"binding_ion_8.0A": null,
"binding_small-molecule-8.0A": null,
"protein_binding": false,
"protein_content": [
0,
0,
0
],
"protein_content_4.0": 0,
"protein_content_6.0": 0,
"protein_content_8.0": 0,
"in_pocket": false,
"id": "1tn2.A.42"
},
{
"nt": "G",
"nt_full": "G",
"nt_code": "G",
"chain_id": "A",
"is_modified": false,
"xyz_P": [
50.14799880981445,
7.47599983215332,
10.14900016784668
],
"binding_ion_4.0A": null,
"binding_small-molecule-4.0A": null,
"binding_ion_6.0A": null,
"binding_small-molecule-6.0A": null,
"binding_small-molecule-8.0A": {
"name": "SPM",
"id": [
"H_SPM",
77,
" "
]
},
"binding_ion_8.0A": [
"H_PB",
84,
" "
],
"protein_binding": false,
"protein_content": [
0,
0,
0
],
"protein_content_4.0": 0,
"protein_content_6.0": 0,
"protein_content_8.0": 0,
"in_pocket": true,
"id": "1tn2.A.43"
},
{
"nt": "A",
"nt_full": "A",
"nt_code": "A",
"chain_id": "A",
"is_modified": false,
"xyz_P": [
45.47999954223633,
11.130999565124512,
11.625
],
"binding_ion_4.0A": null,
"binding_small-molecule-4.0A": null,
"binding_small-molecule-6.0A": {
"name": "SPM",
"id": [
"H_SPM",
77,
" "
]
},
"binding_ion_6.0A": [
"H_PB",
84,
" "
],
"binding_small-molecule-8.0A": {
"name": "SPM",
"id": [
"H_SPM",
77,
" "
]
},
"binding_ion_8.0A": [
"H_PB",
84,
" "
],
"protein_binding": false,
"protein_content": [
0,
0,
0
],
"protein_content_4.0": 0,
"protein_content_6.0": 0,
"protein_content_8.0": 0,
"in_pocket": true,
"id": "1tn2.A.44"
},
{
"nt": "G",
"nt_full": "G",
"nt_code": "G",
"chain_id": "A",
"is_modified": false,
"xyz_P": [
40.39500045776367,
13.185999870300293,
13.767999649047852
],
"binding_small-molecule-4.0A": {
"name": "SPM",
"id": [
"H_SPM",
77,
" "
]
},
"binding_ion_4.0A": [
"H_PB",
84,
" "
],
"binding_small-molecule-6.0A": {
"name": "SPM",
"id": [
"H_SPM",
77,
" "
]
},
"binding_ion_6.0A": [
"H_PB",
84,
" "
],
"binding_small-molecule-8.0A": {
"name": "SPM",
"id": [
"H_SPM",
77,
" "
]
},
"binding_ion_8.0A": [
"H_PB",
84,
" "
],
"protein_binding": false,
"protein_content": [
0,
0,
0
],
"protein_content_4.0": 0,
"protein_content_6.0": 0,
"protein_content_8.0": 0,
"in_pocket": true,
"id": "1tn2.A.45"
},
{
"nt": "G",
"nt_full": "7MG",
"nt_code": "G",
"chain_id": "A",
"is_modified": true,
"xyz_P": [
37.654998779296875,
12.333999633789062,
18.493000030517578
],
"binding_ion_4.0A": null,
"binding_small-molecule-4.0A": null,
"binding_ion_6.0A": null,
"binding_small-molecule-6.0A": null,
"binding_ion_8.0A": null,
"binding_small-molecule-8.0A": null,
"protein_binding": false,
"protein_content": [
0,
0,
0
],
"protein_content_4.0": 0,
"protein_content_6.0": 0,
"protein_content_8.0": 0,
"in_pocket": true,
"id": "1tn2.A.46"
},
{
"nt": "U",
"nt_full": "U",
"nt_code": "U",
"chain_id": "A",
"is_modified": false,
"xyz_P": [
35.185001373291016,
12.553999900817871,
23.993000030517578
],
"binding_ion_4.0A": null,
"binding_small-molecule-4.0A": null,
"binding_ion_6.0A": null,
"binding_small-molecule-6.0A": null,
"binding_ion_8.0A": null,
"binding_small-molecule-8.0A": null,
"protein_binding": false,
"protein_content": [
0,
0,
0
],
"protein_content_4.0": 0,
"protein_content_6.0": 0,
"protein_content_8.0": 0,
"in_pocket": false,
"id": "1tn2.A.47"
},
{
"nt": "C",
"nt_full": "C",
"nt_code": "C",
"chain_id": "A",
"is_modified": false,
"xyz_P": [
39.45600128173828,
15.081000328063965,
29.106000900268555
],
"binding_ion_4.0A": null,
"binding_small-molecule-4.0A": null,
"binding_ion_6.0A": null,
"binding_small-molecule-6.0A": null,
"binding_ion_8.0A": [
"H_PB",
83,
" "
],
"binding_small-molecule-8.0A": null,
"protein_binding": false,
"protein_content": [
0,
0,
0
],
"protein_content_4.0": 0,
"protein_content_6.0": 0,
"protein_content_8.0": 0,
"in_pocket": false,
"id": "1tn2.A.48"
},
{
"nt": "C",
"nt_full": "5MC",
"nt_code": "C",
"chain_id": "A",
"is_modified": true,
"xyz_P": [
39.3390007019043,
9.550000190734863,
33.70600128173828
],
"binding_ion_4.0A": null,
"binding_small-molecule-4.0A": null,
"binding_ion_6.0A": null,
"binding_small-molecule-6.0A": null,
"binding_ion_8.0A": null,
"binding_small-molecule-8.0A": null,
"protein_binding": false,
"protein_content": [
0,
0,
0
],
"protein_content_4.0": 0,
"protein_content_6.0": 0,
"protein_content_8.0": 0,
"in_pocket": false,
"id": "1tn2.A.49"
},
{
"nt": "U",
"nt_full": "U",
"nt_code": "U",
"chain_id": "A",
"is_modified": false,
"xyz_P": [
36.17100143432617,
13.970000267028809,
33.0620002746582
],
"binding_ion_4.0A": null,
"binding_small-molecule-4.0A": null,
"binding_ion_6.0A": null,
"binding_small-molecule-6.0A": null,
"binding_ion_8.0A": null,
"binding_small-molecule-8.0A": null,
"protein_binding": false,
"protein_content": [
0,
0,
0
],
"protein_content_4.0": 0,
"protein_content_6.0": 0,
"protein_content_8.0": 0,
"in_pocket": false,
"id": "1tn2.A.50"
},
{
"nt": "U",
"nt_full": "PSU",
"nt_code": "U",
"chain_id": "A",
"is_modified": true,
"xyz_P": [
49.88199996948242,
27.386999130249023,
44.53200149536133
],
"binding_ion_4.0A": null,
"binding_small-molecule-4.0A": null,
"binding_ion_6.0A": null,
"binding_small-molecule-6.0A": null,
"binding_ion_8.0A": null,
"binding_small-molecule-8.0A": null,
"protein_binding": false,
"protein_content": [
0,
0,
0
],
"protein_content_4.0": 0,
"protein_content_6.0": 0,
"protein_content_8.0": 0,
"in_pocket": false,
"id": "1tn2.A.55"
},
{
"nt": "C",
"nt_full": "C",
"nt_code": "C",
"chain_id": "A",
"is_modified": false,
"xyz_P": [
53.744998931884766,
28.31599998474121,
41.05500030517578
],
"binding_ion_4.0A": null,
"binding_small-molecule-4.0A": null,
"binding_ion_6.0A": null,
"binding_small-molecule-6.0A": null,
"binding_ion_8.0A": null,
"binding_small-molecule-8.0A": null,
"protein_binding": false,
"protein_content": [
0,
0,
0
],
"protein_content_4.0": 0,
"protein_content_6.0": 0,
"protein_content_8.0": 0,
"in_pocket": false,
"id": "1tn2.A.56"
},
{
"nt": "G",
"nt_full": "G",
"nt_code": "G",
"chain_id": "A",
"is_modified": false,
"xyz_P": [
50.39500045776367,
27.624000549316406,
36.724998474121094
],
"binding_ion_4.0A": null,
"binding_small-molecule-4.0A": null,
"binding_ion_6.0A": null,
"binding_small-molecule-6.0A": null,
"binding_ion_8.0A": [
"H_MG",
80,
" "
],
"binding_small-molecule-8.0A": null,
"protein_binding": false,
"protein_content": [
0,
0,
0
],
"protein_content_4.0": 0,
"protein_content_6.0": 0,
"protein_content_8.0": 0,
"in_pocket": false,
"id": "1tn2.A.57"
},
{
"nt": "G",
"nt_full": "G",
"nt_code": "G",
"chain_id": "A",
"is_modified": false,
"xyz_P": [
31.6560001373291,
13.432999610900879,
49.22800064086914
],
"binding_ion_4.0A": null,
"binding_small-molecule-4.0A": null,
"binding_ion_6.0A": null,
"binding_small-molecule-6.0A": null,
"binding_ion_8.0A": null,
"binding_small-molecule-8.0A": null,
"protein_binding": false,
"protein_content": [
0,
0,
0
],
"protein_content_4.0": 0,
"protein_content_6.0": 0,
"protein_content_8.0": 0,
"in_pocket": false,
"id": "1tn2.A.65"
},
{
"nt": "A",
"nt_full": "A",
"nt_code": "A",
"chain_id": "A",
"is_modified": false,
"xyz_P": [
27.909000396728516,
10.91100025177002,
45.7130012512207
],
"binding_ion_4.0A": null,
"binding_small-molecule-4.0A": null,
"binding_ion_6.0A": null,
"binding_small-molecule-6.0A": null,
"binding_ion_8.0A": null,
"binding_small-molecule-8.0A": null,
"protein_binding": false,
"protein_content": [
0,
0,
0
],
"protein_content_4.0": 0,
"protein_content_6.0": 0,
"protein_content_8.0": 0,
"in_pocket": false,
"id": "1tn2.A.66"
},
{
"nt": "A",
"nt_full": "A",
"nt_code": "A",
"chain_id": "A",
"is_modified": false,
"xyz_P": [
25.51300048828125,
7.084000110626221,
41.965999603271484
],
"binding_ion_4.0A": null,
"binding_small-molecule-4.0A": null,
"binding_ion_6.0A": null,
"binding_small-molecule-6.0A": null,
"binding_ion_8.0A": null,
"binding_small-molecule-8.0A": null,
"protein_binding": false,
"protein_content": [
0,
0,
0
],
"protein_content_4.0": 0,
"protein_content_6.0": 0,
"protein_content_8.0": 0,
"in_pocket": false,
"id": "1tn2.A.67"
}
],
"links": [
{
"LW": "B35",
"source": "1tn2.A.5",
"target": "1tn2.A.6"
},
{
"LW": "B53",
"source": "1tn2.A.6",
"target": "1tn2.A.5"
},
{
"LW": "B35",
"source": "1tn2.A.6",
"target": "1tn2.A.7"
},
{
"LW": "cWW",
"source": "1tn2.A.6",
"target": "1tn2.A.67"
},
{
"LW": "B53",
"source": "1tn2.A.7",
"target": "1tn2.A.6"
},
{
"LW": "B35",
"source": "1tn2.A.7",
"target": "1tn2.A.8"
},
{
"LW": "cWW",
"source": "1tn2.A.7",
"target": "1tn2.A.66"
},
{
"LW": "B53",
"source": "1tn2.A.8",
"target": "1tn2.A.7"
},
{
"LW": "B35",
"source": "1tn2.A.8",
"target": "1tn2.A.9"
},
{
"LW": "tWH",
"source": "1tn2.A.8",
"target": "1tn2.A.14"
},
{
"LW": "B53",
"source": "1tn2.A.9",
"target": "1tn2.A.8"
},
{
"LW": "B35",
"source": "1tn2.A.9",
"target": "1tn2.A.10"
},
{
"LW": "tHH",
"source": "1tn2.A.9",
"target": "1tn2.A.23"
},
{
"LW": "B53",
"source": "1tn2.A.10",
"target": "1tn2.A.9"
},
{
"LW": "B35",
"source": "1tn2.A.10",
"target": "1tn2.A.11"
},
{
"LW": "cHS",
"source": "1tn2.A.10",
"target": "1tn2.A.45"
},
{
"LW": "cWW",
"source": "1tn2.A.10",
"target": "1tn2.A.25"
},
{
"LW": "B53",
"source": "1tn2.A.11",
"target": "1tn2.A.10"
},
{
"LW": "B35",
"source": "1tn2.A.11",
"target": "1tn2.A.12"
},
{
"LW": "cWW",
"source": "1tn2.A.11",
"target": "1tn2.A.24"
},
{
"LW": "B53",
"source": "1tn2.A.12",
"target": "1tn2.A.11"
},
{
"LW": "B35",
"source": "1tn2.A.12",
"target": "1tn2.A.13"
},
{
"LW": "cWW",
"source": "1tn2.A.12",
"target": "1tn2.A.23"
},
{
"LW": "B53",
"source": "1tn2.A.13",
"target": "1tn2.A.12"
},
{
"LW": "B35",
"source": "1tn2.A.13",
"target": "1tn2.A.14"
},
{
"LW": "cWW",
"source": "1tn2.A.13",
"target": "1tn2.A.22"
},
{
"LW": "B53",
"source": "1tn2.A.14",
"target": "1tn2.A.13"
},
{
"LW": "B35",
"source": "1tn2.A.14",
"target": "1tn2.A.15"
},
{
"LW": "tHW",
"source": "1tn2.A.14",
"target": "1tn2.A.8"
},
{
"LW": "B53",
"source": "1tn2.A.15",
"target": "1tn2.A.14"
},
{
"LW": "B35",
"source": "1tn2.A.15",
"target": "1tn2.A.16"
},
{
"LW": "tWW",
"source": "1tn2.A.15",
"target": "1tn2.A.48"
},
{
"LW": "B53",
"source": "1tn2.A.16",
"target": "1tn2.A.15"
},
{
"LW": "B35",
"source": "1tn2.A.16",
"target": "1tn2.A.17"
},
{
"LW": "B53",
"source": "1tn2.A.17",
"target": "1tn2.A.16"
},
{
"LW": "B35",
"source": "1tn2.A.17",
"target": "1tn2.A.18"
},
{
"LW": "B53",
"source": "1tn2.A.18",
"target": "1tn2.A.17"
},
{
"LW": "B35",
"source": "1tn2.A.18",
"target": "1tn2.A.19"
},
{
"LW": "tWS",
"source": "1tn2.A.18",
"target": "1tn2.A.55"
},
{
"LW": "B53",
"source": "1tn2.A.19",
"target": "1tn2.A.18"
},
{
"LW": "B35",
"source": "1tn2.A.19",
"target": "1tn2.A.20"
},
{
"LW": "cWW",
"source": "1tn2.A.19",
"target": "1tn2.A.56"
},
{
"LW": "B53",
"source": "1tn2.A.20",
"target": "1tn2.A.19"
},
{
"LW": "B35",
"source": "1tn2.A.20",
"target": "1tn2.A.21"
},
{
"LW": "B53",
"source": "1tn2.A.21",
"target": "1tn2.A.20"
},
{
"LW": "B35",
"source": "1tn2.A.21",
"target": "1tn2.A.22"
},
{
"LW": "B53",
"source": "1tn2.A.22",
"target": "1tn2.A.21"
},
{
"LW": "B35",
"source": "1tn2.A.22",
"target": "1tn2.A.23"
},
{
"LW": "cWW",
"source": "1tn2.A.22",
"target": "1tn2.A.13"
},
{
"LW": "tHW",
"source": "1tn2.A.22",
"target": "1tn2.A.46"
},
{
"LW": "B53",
"source": "1tn2.A.23",
"target": "1tn2.A.22"
},
{
"LW": "B35",
"source": "1tn2.A.23",
"target": "1tn2.A.24"
},
{
"LW": "cWW",
"source": "1tn2.A.23",
"target": "1tn2.A.12"
},
{
"LW": "tHH",
"source": "1tn2.A.23",
"target": "1tn2.A.9"
},
{
"LW": "B53",
"source": "1tn2.A.24",
"target": "1tn2.A.23"
},
{
"LW": "B35",
"source": "1tn2.A.24",
"target": "1tn2.A.25"
},
{
"LW": "cWW",
"source": "1tn2.A.24",
"target": "1tn2.A.11"
},
{
"LW": "B53",
"source": "1tn2.A.25",
"target": "1tn2.A.24"
},
{
"LW": "B35",
"source": "1tn2.A.25",
"target": "1tn2.A.26"
},
{
"LW": "cWW",
"source": "1tn2.A.25",
"target": "1tn2.A.10"
},
{
"LW": "B53",
"source": "1tn2.A.26",
"target": "1tn2.A.25"
},
{
"LW": "B35",
"source": "1tn2.A.26",
"target": "1tn2.A.27"
},
{
"LW": "cWW",
"source": "1tn2.A.26",
"target": "1tn2.A.44"
},
{
"LW": "B53",
"source": "1tn2.A.27",
"target": "1tn2.A.26"
},
{
"LW": "B35",
"source": "1tn2.A.27",
"target": "1tn2.A.28"
},
{
"LW": "cWW",
"source": "1tn2.A.27",
"target": "1tn2.A.43"
},
{
"LW": "B53",
"source": "1tn2.A.28",
"target": "1tn2.A.27"
},
{
"LW": "B35",
"source": "1tn2.A.28",
"target": "1tn2.A.29"
},
{
"LW": "cWW",
"source": "1tn2.A.28",
"target": "1tn2.A.42"
},
{
"LW": "B53",
"source": "1tn2.A.29",
"target": "1tn2.A.28"
},
{
"LW": "B35",
"source": "1tn2.A.29",
"target": "1tn2.A.30"
},
{
"LW": "cWW",
"source": "1tn2.A.29",
"target": "1tn2.A.41"
},
{
"LW": "B53",
"source": "1tn2.A.30",
"target": "1tn2.A.29"
},
{
"LW": "B35",
"source": "1tn2.A.30",
"target": "1tn2.A.31"
},
{
"LW": "cWW",
"source": "1tn2.A.30",
"target": "1tn2.A.40"
},
{
"LW": "B53",
"source": "1tn2.A.31",
"target": "1tn2.A.30"
},
{
"LW": "cWW",
"source": "1tn2.A.31",
"target": "1tn2.A.39"
},
{
"LW": "B35",
"source": "1tn2.A.39",
"target": "1tn2.A.40"
},
{
"LW": "cWW",
"source": "1tn2.A.39",
"target": "1tn2.A.31"
},
{
"LW": "B53",
"source": "1tn2.A.40",
"target": "1tn2.A.39"
},
{
"LW": "B35",
"source": "1tn2.A.40",
"target": "1tn2.A.41"
},
{
"LW": "cWW",
"source": "1tn2.A.40",
"target": "1tn2.A.30"
},
{
"LW": "B53",
"source": "1tn2.A.41",
"target": "1tn2.A.40"
},
{
"LW": "B35",
"source": "1tn2.A.41",
"target": "1tn2.A.42"
},
{
"LW": "cWW",
"source": "1tn2.A.41",
"target": "1tn2.A.29"
},
{
"LW": "B53",
"source": "1tn2.A.42",
"target": "1tn2.A.41"
},
{
"LW": "B35",
"source": "1tn2.A.42",
"target": "1tn2.A.43"
},
{
"LW": "cWW",
"source": "1tn2.A.42",
"target": "1tn2.A.28"
},
{
"LW": "B53",
"source": "1tn2.A.43",
"target": "1tn2.A.42"
},
{
"LW": "B35",
"source": "1tn2.A.43",
"target": "1tn2.A.44"
},
{
"LW": "cWW",
"source": "1tn2.A.43",
"target": "1tn2.A.27"
},
{
"LW": "B53",
"source": "1tn2.A.44",
"target": "1tn2.A.43"
},
{
"LW": "B35",
"source": "1tn2.A.44",
"target": "1tn2.A.45"
},
{
"LW": "cWW",
"source": "1tn2.A.44",
"target": "1tn2.A.26"
},
{
"LW": "B53",
"source": "1tn2.A.45",
"target": "1tn2.A.44"
},
{
"LW": "B35",
"source": "1tn2.A.45",
"target": "1tn2.A.46"
},
{
"LW": "cSH",
"source": "1tn2.A.45",
"target": "1tn2.A.10"
},
{
"LW": "B53",
"source": "1tn2.A.46",
"target": "1tn2.A.45"
},
{
"LW": "B35",
"source": "1tn2.A.46",
"target": "1tn2.A.47"
},
{
"LW": "tWH",
"source": "1tn2.A.46",
"target": "1tn2.A.22"
},
{
"LW": "B53",
"source": "1tn2.A.47",
"target": "1tn2.A.46"
},
{
"LW": "B35",
"source": "1tn2.A.47",
"target": "1tn2.A.48"
},
{
"LW": "B53",
"source": "1tn2.A.48",
"target": "1tn2.A.47"
},
{
"LW": "B35",
"source": "1tn2.A.48",
"target": "1tn2.A.49"
},
{
"LW": "tWW",
"source": "1tn2.A.48",
"target": "1tn2.A.15"
},
{
"LW": "B53",
"source": "1tn2.A.49",
"target": "1tn2.A.48"
},
{
"LW": "B35",
"source": "1tn2.A.49",
"target": "1tn2.A.50"
},
{
"LW": "cWW",
"source": "1tn2.A.49",
"target": "1tn2.A.65"
},
{
"LW": "B53",
"source": "1tn2.A.50",
"target": "1tn2.A.49"
},
{
"LW": "B35",
"source": "1tn2.A.55",
"target": "1tn2.A.56"
},
{
"LW": "tSW",
"source": "1tn2.A.55",
"target": "1tn2.A.18"
},
{
"LW": "B53",
"source": "1tn2.A.56",
"target": "1tn2.A.55"
},
{
"LW": "B35",
"source": "1tn2.A.56",
"target": "1tn2.A.57"
},
{
"LW": "cWW",
"source": "1tn2.A.56",
"target": "1tn2.A.19"
},
{
"LW": "B53",
"source": "1tn2.A.57",
"target": "1tn2.A.56"
},
{
"LW": "B35",
"source": "1tn2.A.65",
"target": "1tn2.A.66"
},
{
"LW": "cWW",
"source": "1tn2.A.65",
"target": "1tn2.A.49"
},
{
"LW": "B53",
"source": "1tn2.A.66",
"target": "1tn2.A.65"
},
{
"LW": "B35",
"source": "1tn2.A.66",
"target": "1tn2.A.67"
},
{
"LW": "cWW",
"source": "1tn2.A.66",
"target": "1tn2.A.7"
},
{
"LW": "B53",
"source": "1tn2.A.67",
"target": "1tn2.A.66"
},
{
"LW": "cWW",
"source": "1tn2.A.67",
"target": "1tn2.A.6"
}
]
}