Datasets:
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Modify README.md
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README.md
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@@ -29,12 +29,10 @@ The dataset is derived from the DBPP GitHub repository (https://github.com/yxgu2
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All molecules were standardized using MolVS(clean_data.py), the datasets were split by sklearn(split_dataset.py), and RDKit descriptors (216 features) were computed (Rdkit_descriptor.py).
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### Files:
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- 'train_rdkit_descriptors.parquet': RDKit descriptors for training data
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- 'test_rdkit_descriptors.parquet': RDKit descriptors for test data
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Each
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- 'label': 0 for non-drug, 1 for drug
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- 'Standardized_SMILES'
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- 216 numerical RDKit descriptors
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## Model Development
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All models were trained using H2O AutoML with 10-fold cross-validation(model_constrcution.py). The top 3 models were also evaluated using an independent test set, and SHAP analysis was used to interpret the top structural features contributing to drug-likeness(model_analysis.py).
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All molecules were standardized using MolVS(clean_data.py), the datasets were split by sklearn(split_dataset.py), and RDKit descriptors (216 features) were computed (Rdkit_descriptor.py).
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### Files:
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- 'train_rdkit_descriptors.parquet'
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- 'test_rdkit_descriptors.parquet'
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Each file contains:
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- 'label': 0 for non-drug, 1 for drug
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- 'Standardized_SMILES'
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- 216 numerical RDKit descriptors
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## Model Development
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All models were trained using H2O AutoML with 10-fold cross-validation(model_constrcution.py). The top 3 models were also evaluated using an independent test set, and SHAP analysis was used to interpret the top structural features contributing to drug-likeness(model_analysis.py).
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scripts/model_construction.ipynb
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